Query 019392
Match_columns 341
No_of_seqs 362 out of 2432
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 15:22:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019392.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019392hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 2.3E-38 7.7E-43 269.0 18.0 172 112-291 12-183 (213)
2 3md3_A Nuclear and cytoplasmic 100.0 9.3E-37 3.2E-41 248.6 19.5 166 116-288 1-166 (166)
3 1l3k_A Heterogeneous nuclear r 100.0 7.9E-37 2.7E-41 256.1 19.5 179 110-293 8-187 (196)
4 2qfj_A FBP-interacting repress 100.0 1.5E-36 5.3E-41 258.2 20.3 177 113-292 26-208 (216)
5 1b7f_A Protein (SXL-lethal pro 100.0 2.7E-36 9.1E-41 246.5 19.7 165 114-286 2-168 (168)
6 1fxl_A Paraneoplastic encephal 100.0 5.4E-36 1.8E-40 244.3 20.4 164 115-286 2-167 (167)
7 2cjk_A Nuclear polyadenylated 100.0 1.8E-36 6.1E-41 247.3 13.5 165 114-289 2-166 (167)
8 3smz_A Protein raver-1, ribonu 100.0 2.3E-35 7.8E-40 261.6 21.6 178 113-340 20-198 (284)
9 3nmr_A Cugbp ELAV-like family 100.0 3.2E-35 1.1E-39 241.6 20.8 168 114-287 2-175 (175)
10 2ghp_A U4/U6 snRNA-associated 100.0 7.7E-35 2.6E-39 259.2 18.5 188 109-340 35-224 (292)
11 2g4b_A Splicing factor U2AF 65 100.0 6.8E-34 2.3E-38 233.2 17.9 160 113-287 2-172 (172)
12 2yh0_A Splicing factor U2AF 65 100.0 1.4E-33 4.8E-38 236.6 17.7 169 113-291 2-196 (198)
13 3smz_A Protein raver-1, ribonu 100.0 4.8E-33 1.6E-37 246.6 21.2 173 114-292 94-267 (284)
14 1fje_B Nucleolin RBD12, protei 100.0 2.9E-34 1E-38 236.1 11.9 166 111-289 9-174 (175)
15 3pgw_A U1-A; protein-RNA compl 100.0 7.9E-33 2.7E-37 245.0 21.0 167 111-288 5-282 (282)
16 3tyt_A Heterogeneous nuclear r 100.0 2.9E-33 9.9E-38 235.3 17.2 163 114-286 3-204 (205)
17 2ghp_A U4/U6 snRNA-associated 100.0 4.6E-33 1.6E-37 247.7 17.1 171 114-289 116-291 (292)
18 2adc_A Polypyrimidine tract-bi 100.0 3.3E-32 1.1E-36 233.6 20.7 165 112-289 31-228 (229)
19 1qm9_A Polypyrimidine tract-bi 100.0 3.5E-32 1.2E-36 228.3 16.7 163 114-289 2-197 (198)
20 3sde_A Paraspeckle component 1 100.0 8.9E-32 3E-36 235.4 19.1 160 111-291 18-181 (261)
21 2kn4_A Immunoglobulin G-bindin 99.9 4.8E-26 1.6E-30 183.8 14.5 146 144-292 2-153 (158)
22 4f25_A Polyadenylate-binding p 99.9 2.1E-25 7.3E-30 169.9 10.5 107 208-341 5-111 (115)
23 2i2y_A Fusion protein consists 99.9 7.8E-24 2.7E-28 169.2 10.4 128 154-290 10-149 (150)
24 4fxv_A ELAV-like protein 1; RN 99.9 3.3E-23 1.1E-27 153.1 11.1 81 207-288 18-98 (99)
25 4f25_A Polyadenylate-binding p 99.9 1.3E-22 4.4E-27 154.4 9.1 107 114-224 4-113 (115)
26 2lea_A Serine/arginine-rich sp 99.9 7.9E-23 2.7E-27 160.0 8.0 127 158-293 5-131 (135)
27 3s8s_A Histone-lysine N-methyl 99.9 7.9E-22 2.7E-26 148.5 11.7 85 206-291 4-88 (110)
28 2lxi_A RNA-binding protein 10; 99.9 1.1E-22 3.6E-27 148.0 6.6 84 208-292 1-86 (91)
29 4f02_A Polyadenylate-binding p 99.9 6.9E-22 2.4E-26 167.3 11.0 104 206-340 13-116 (213)
30 1fxl_A Paraneoplastic encephal 99.9 2.3E-21 7.9E-26 157.3 13.5 100 208-340 2-101 (167)
31 1b7f_A Protein (SXL-lethal pro 99.9 1.7E-21 5.8E-26 158.4 12.5 101 207-340 2-102 (168)
32 2lkz_A RNA-binding protein 5; 99.9 4.5E-22 1.5E-26 145.3 7.3 80 208-288 9-94 (95)
33 1l3k_A Heterogeneous nuclear r 99.9 2.4E-21 8.3E-26 161.6 12.5 109 204-340 9-117 (196)
34 1rk8_A CG8781-PA, CG8781-PA pr 99.9 1.5E-21 5.1E-26 158.4 10.7 131 162-293 11-156 (165)
35 2hvz_A Splicing factor, argini 99.9 1.5E-21 5E-26 145.1 8.9 100 209-336 1-100 (101)
36 3md1_A Nuclear and cytoplasmic 99.9 5E-21 1.7E-25 136.9 11.3 81 209-290 2-82 (83)
37 2dgo_A Cytotoxic granule-assoc 99.9 1E-20 3.4E-25 144.0 13.7 90 203-293 10-99 (115)
38 3bs9_A Nucleolysin TIA-1 isofo 99.9 3.6E-21 1.2E-25 138.9 10.5 82 207-289 5-86 (87)
39 2dnz_A Probable RNA-binding pr 99.9 7E-21 2.4E-25 139.8 12.0 87 206-293 3-89 (95)
40 2do4_A Squamous cell carcinoma 99.9 1.2E-20 4.1E-25 139.9 13.2 86 204-291 13-98 (100)
41 2cq0_A Eukaryotic translation 99.8 6.2E-21 2.1E-25 142.2 11.4 88 204-292 11-98 (103)
42 1whw_A Hypothetical protein ri 99.8 7.1E-21 2.4E-25 140.8 11.4 87 205-292 5-91 (99)
43 2dgs_A DAZ-associated protein 99.8 1.3E-20 4.3E-25 139.5 12.6 87 205-293 7-93 (99)
44 2x1f_A MRNA 3'-END-processing 99.8 6E-21 2.1E-25 140.4 10.7 85 207-292 1-85 (96)
45 2cpz_A CUG triplet repeat RNA- 99.8 7.6E-21 2.6E-25 144.7 11.3 89 204-293 21-109 (115)
46 2jrs_A RNA-binding protein 39; 99.8 1.4E-20 4.8E-25 141.3 12.3 87 203-290 21-107 (108)
47 2cqb_A Peptidyl-prolyl CIS-tra 99.8 8.7E-21 3E-25 141.2 11.0 88 205-293 9-96 (102)
48 3p5t_L Cleavage and polyadenyl 99.8 1.6E-21 5.6E-26 141.6 6.8 83 209-292 2-86 (90)
49 2dnm_A SRP46 splicing factor; 99.8 9.1E-21 3.1E-25 141.3 10.7 89 204-293 9-97 (103)
50 2cqc_A Arginine/serine-rich sp 99.8 1.4E-20 4.9E-25 138.1 11.6 85 203-288 10-94 (95)
51 1x5u_A Splicing factor 3B subu 99.8 1.1E-20 3.9E-25 141.3 11.2 88 204-292 11-98 (105)
52 1p27_B RNA-binding protein 8A; 99.8 1.1E-20 3.6E-25 141.8 11.0 86 205-291 20-105 (106)
53 2fy1_A RNA-binding motif prote 99.8 1.2E-20 4E-25 143.7 11.3 86 205-292 4-89 (116)
54 1x5t_A Splicing factor 3B subu 99.8 7.5E-21 2.6E-25 139.9 9.8 87 206-293 3-90 (96)
55 2kxn_B Transformer-2 protein h 99.8 1E-20 3.4E-25 146.7 11.0 87 204-291 42-128 (129)
56 3mdf_A Peptidyl-prolyl CIS-tra 99.8 8.6E-21 3E-25 136.2 9.9 81 206-287 5-85 (85)
57 1x4h_A RNA-binding protein 28; 99.8 2E-20 6.9E-25 141.4 12.3 89 204-293 11-105 (111)
58 1u6f_A Tcubp1, RNA-binding pro 99.8 2E-20 6.7E-25 147.4 12.7 89 204-293 38-126 (139)
59 2e5h_A Zinc finger CCHC-type a 99.8 2.1E-20 7.2E-25 136.9 11.7 82 205-287 13-94 (94)
60 3md3_A Nuclear and cytoplasmic 99.8 1.6E-20 5.6E-25 152.1 11.9 100 209-340 1-100 (166)
61 1x5s_A Cold-inducible RNA-bind 99.8 1.2E-20 4.2E-25 140.4 10.2 88 205-293 9-96 (102)
62 1oo0_B CG8781-PA, drosophila Y 99.8 1.4E-20 4.7E-25 142.1 10.5 87 205-292 23-109 (110)
63 2dnh_A Bruno-like 5, RNA bindi 99.8 3.5E-20 1.2E-24 138.6 12.6 87 205-293 12-101 (105)
64 2cph_A RNA binding motif prote 99.8 2.9E-20 9.9E-25 139.6 12.0 88 204-292 11-100 (107)
65 2la6_A RNA-binding protein FUS 99.8 2.8E-20 9.6E-25 137.6 11.7 83 204-287 9-99 (99)
66 4fxv_A ELAV-like protein 1; RN 99.8 1.3E-20 4.5E-25 139.1 9.7 82 113-196 17-98 (99)
67 2cpf_A RNA binding motif prote 99.8 1.4E-20 4.8E-25 139.0 9.9 87 206-293 3-92 (98)
68 2d9p_A Polyadenylate-binding p 99.8 3E-20 1E-24 138.5 11.8 88 203-293 10-97 (103)
69 3ns6_A Eukaryotic translation 99.8 2.3E-21 7.8E-26 143.6 5.6 83 207-290 5-94 (100)
70 2dhg_A TRNA selenocysteine ass 99.8 1.7E-20 5.9E-25 140.1 10.4 87 205-293 6-94 (104)
71 2div_A TRNA selenocysteine ass 99.8 2.5E-20 8.7E-25 137.8 11.0 86 205-291 6-96 (99)
72 2cqd_A RNA-binding region cont 99.8 3.8E-20 1.3E-24 141.0 12.2 88 204-293 13-100 (116)
73 2dng_A Eukaryotic translation 99.8 4E-20 1.4E-24 137.8 11.7 87 204-293 11-97 (103)
74 2dgp_A Bruno-like 4, RNA bindi 99.8 2.4E-20 8.1E-25 139.8 10.1 87 205-292 10-99 (106)
75 2cpe_A RNA-binding protein EWS 99.8 3.4E-20 1.2E-24 140.6 10.8 88 204-292 11-106 (113)
76 3pgw_S U1-70K; protein-RNA com 99.8 4.1E-21 1.4E-25 178.6 6.9 88 205-293 99-186 (437)
77 1wi8_A EIF-4B, eukaryotic tran 99.8 4.5E-20 1.5E-24 137.8 10.9 86 205-293 12-98 (104)
78 4a8x_A RNA-binding protein wit 99.8 2.8E-20 9.6E-25 134.5 9.4 84 207-291 3-87 (88)
79 2qfj_A FBP-interacting repress 99.8 2.4E-20 8.1E-25 158.0 10.5 112 207-340 27-138 (216)
80 3n9u_C Cleavage and polyadenyl 99.8 2.1E-20 7.3E-25 149.5 9.5 83 207-290 54-138 (156)
81 3ucg_A Polyadenylate-binding p 99.8 4.6E-20 1.6E-24 133.6 10.3 81 208-290 6-86 (89)
82 2dh8_A DAZ-associated protein 99.8 3.5E-20 1.2E-24 138.7 9.8 88 203-292 11-98 (105)
83 2khc_A Testis-specific RNP-typ 99.8 2.8E-20 9.6E-25 142.2 9.5 84 203-287 35-118 (118)
84 3tyt_A Heterogeneous nuclear r 99.8 6.5E-20 2.2E-24 153.8 12.5 78 207-290 3-81 (205)
85 2rs2_A Musashi-1, RNA-binding 99.8 5.7E-20 1.9E-24 138.3 10.8 87 204-292 21-107 (109)
86 1u6f_A Tcubp1, RNA-binding pro 99.8 1.4E-19 4.9E-24 142.4 13.5 86 111-198 38-123 (139)
87 2dgw_A Probable RNA-binding pr 99.8 1.1E-19 3.8E-24 132.2 11.9 83 205-291 7-89 (91)
88 2cq3_A RNA-binding protein 9; 99.8 1.8E-19 6.2E-24 134.2 13.3 87 204-293 11-97 (103)
89 3nmr_A Cugbp ELAV-like family 99.8 5.5E-20 1.9E-24 150.4 11.2 102 207-340 2-108 (175)
90 2do0_A HnRNP M, heterogeneous 99.8 2.1E-19 7.2E-24 136.5 13.6 86 205-292 12-97 (114)
91 1sjq_A Polypyrimidine tract-bi 99.8 3.6E-20 1.2E-24 136.6 9.0 82 205-293 13-96 (105)
92 2cqi_A Nucleolysin TIAR; RNA r 99.8 1.6E-19 5.4E-24 134.5 12.5 87 204-293 11-97 (103)
93 1p1t_A Cleavage stimulation fa 99.8 4.5E-20 1.6E-24 137.8 9.3 85 207-292 7-91 (104)
94 2m2b_A RNA-binding protein 10; 99.8 1.4E-20 4.9E-25 146.5 6.8 86 205-292 20-111 (131)
95 2ywk_A Putative RNA-binding pr 99.8 6.3E-20 2.1E-24 134.6 9.8 82 205-288 13-94 (95)
96 2kt5_A RNA and export factor-b 99.8 2.8E-19 9.4E-24 137.9 13.8 87 204-292 31-117 (124)
97 3s7r_A Heterogeneous nuclear r 99.8 1.1E-19 3.8E-24 131.0 10.8 80 205-286 8-87 (87)
98 2dgv_A HnRNP M, heterogeneous 99.8 1.1E-19 3.7E-24 132.5 10.8 85 205-292 5-89 (92)
99 2cqg_A TDP-43, TAR DNA-binding 99.8 2.3E-19 7.9E-24 133.6 12.7 87 204-293 11-97 (103)
100 2cqp_A RNA-binding protein 12; 99.8 5.1E-20 1.7E-24 135.9 9.0 84 205-289 12-95 (98)
101 1s79_A Lupus LA protein; RRM, 99.8 5.7E-20 2E-24 136.4 9.3 80 206-288 9-88 (103)
102 1h2v_Z 20 kDa nuclear CAP bind 99.8 1.3E-19 4.4E-24 145.6 12.1 87 205-292 36-122 (156)
103 3ulh_A THO complex subunit 4; 99.8 1.2E-19 4.1E-24 136.2 11.0 81 205-287 26-106 (107)
104 2dgx_A KIAA0430 protein; RRM d 99.8 1.1E-19 3.8E-24 133.5 10.5 83 206-292 7-93 (96)
105 1x4b_A Heterogeneous nuclear r 99.8 8.2E-20 2.8E-24 139.2 10.1 87 205-293 24-110 (116)
106 3ex7_B RNA-binding protein 8A; 99.8 8.4E-20 2.9E-24 141.3 10.2 88 205-293 19-106 (126)
107 2j76_E EIF-4B, EIF4B, eukaryot 99.8 3.2E-20 1.1E-24 137.5 7.2 83 205-290 16-99 (100)
108 2mss_A Protein (musashi1); RNA 99.8 3.6E-20 1.2E-24 129.7 7.0 75 210-286 1-75 (75)
109 2cjk_A Nuclear polyadenylated 99.8 1.5E-20 5.2E-25 152.6 5.8 99 207-340 2-100 (167)
110 1x4e_A RNA binding motif, sing 99.8 1.9E-20 6.3E-25 134.5 5.6 81 206-287 3-83 (85)
111 2cpi_A CCR4-NOT transcription 99.8 1.3E-19 4.4E-24 136.9 10.2 87 205-292 12-104 (111)
112 3r27_A HnRNP L, heterogeneous 99.8 1.5E-19 5.2E-24 131.9 10.1 79 205-290 18-98 (100)
113 2ek1_A RNA-binding protein 12; 99.8 4.5E-20 1.5E-24 135.4 7.2 81 207-288 14-94 (95)
114 2dis_A Unnamed protein product 99.8 1.2E-19 4E-24 136.7 9.7 86 206-292 6-95 (109)
115 3pgw_A U1-A; protein-RNA compl 99.8 5.5E-19 1.9E-23 155.9 15.3 82 205-290 6-91 (282)
116 2wbr_A GW182, gawky, LD47780P; 99.8 1.2E-19 4.1E-24 127.6 8.6 73 208-287 7-79 (89)
117 1x4a_A Splicing factor, argini 99.8 3.2E-19 1.1E-23 134.3 11.6 85 204-292 18-102 (109)
118 2adc_A Polypyrimidine tract-bi 99.8 5E-19 1.7E-23 151.4 14.3 79 205-289 31-110 (229)
119 2cq1_A PTB-like protein L; RRM 99.8 4.6E-19 1.6E-23 130.7 12.0 84 203-293 10-95 (101)
120 2ad9_A Polypyrimidine tract-bi 99.8 2.8E-19 9.4E-24 135.2 10.8 82 205-293 28-111 (119)
121 2err_A Ataxin-2-binding protei 99.8 1.7E-19 5.7E-24 135.7 9.6 85 203-290 24-108 (109)
122 1x5o_A RNA binding motif, sing 99.8 5.8E-19 2E-23 134.0 12.7 83 205-289 22-112 (114)
123 2cq4_A RNA binding motif prote 99.8 7.1E-20 2.4E-24 139.1 7.6 83 207-291 24-106 (114)
124 3s8s_A Histone-lysine N-methyl 99.8 1.9E-19 6.5E-24 135.4 9.8 82 113-196 4-85 (110)
125 1uaw_A Mouse-musashi-1; RNP-ty 99.8 6E-20 2E-24 129.2 6.6 76 209-286 1-76 (77)
126 2jwn_A Embryonic polyadenylate 99.8 2.8E-19 9.5E-24 137.9 10.5 84 207-292 35-118 (124)
127 2khc_A Testis-specific RNP-typ 99.8 4.3E-19 1.5E-23 135.6 11.4 84 109-194 34-117 (118)
128 2dgo_A Cytotoxic granule-assoc 99.8 7.9E-19 2.7E-23 133.5 12.6 92 107-200 7-98 (115)
129 2ki2_A SS-DNA binding protein 99.8 2.6E-20 8.8E-25 135.3 3.9 82 209-292 2-83 (90)
130 1wez_A HnRNP H', FTP-3, hetero 99.8 2E-19 6.8E-24 133.5 8.8 84 205-292 12-95 (102)
131 1qm9_A Polypyrimidine tract-bi 99.8 5.4E-19 1.8E-23 147.7 12.5 127 208-340 3-133 (198)
132 2fc8_A NCL protein; structure 99.8 5.5E-19 1.9E-23 131.3 11.2 86 204-293 11-96 (102)
133 1x5u_A Splicing factor 3B subu 99.8 8.4E-19 2.9E-23 131.1 12.3 87 110-198 10-96 (105)
134 1wg5_A Heterogeneous nuclear r 99.8 4.3E-19 1.5E-23 132.4 10.3 85 205-292 12-97 (104)
135 2cpy_A RNA-binding protein 12; 99.8 1.5E-19 5.2E-24 137.2 7.9 83 205-290 12-95 (114)
136 1wex_A Hypothetical protein (r 99.8 5.6E-19 1.9E-23 131.1 10.6 81 205-292 12-94 (104)
137 2dnh_A Bruno-like 5, RNA bindi 99.8 1.6E-18 5.3E-23 129.6 13.1 89 110-199 10-99 (105)
138 2hgl_A HNRPF protein, heteroge 99.8 1.3E-19 4.5E-24 141.0 7.5 83 205-290 41-126 (136)
139 2nlw_A Eukaryotic translation 99.8 3.1E-19 1E-23 133.4 9.2 83 205-290 12-101 (105)
140 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 4.9E-19 1.7E-23 139.5 10.8 83 203-286 58-140 (140)
141 2dgu_A Heterogeneous nuclear r 99.8 9.2E-19 3.1E-23 130.4 11.7 80 205-293 8-87 (103)
142 2hgn_A Heterogeneous nuclear r 99.8 6.2E-20 2.1E-24 143.3 5.5 125 158-292 2-126 (139)
143 2fc9_A NCL protein; structure 99.8 6.8E-19 2.3E-23 130.6 10.8 84 204-292 11-94 (101)
144 2db1_A Heterogeneous nuclear r 99.8 1.9E-19 6.4E-24 137.4 7.7 83 205-290 14-99 (118)
145 1fje_B Nucleolin RBD12, protei 99.8 5.1E-20 1.7E-24 150.8 4.8 103 205-340 10-112 (175)
146 1x4d_A Matrin 3; structural ge 99.8 2.6E-19 9E-24 131.9 8.0 81 205-292 12-95 (102)
147 2lxi_A RNA-binding protein 10; 99.8 8.7E-20 3E-24 132.5 5.3 82 115-198 1-84 (91)
148 2cq0_A Eukaryotic translation 99.8 6.9E-19 2.4E-23 131.0 10.2 88 109-198 9-96 (103)
149 1x5s_A Cold-inducible RNA-bind 99.8 1.3E-18 4.5E-23 129.3 11.7 87 111-199 8-94 (102)
150 2cph_A RNA binding motif prote 99.8 2E-18 6.8E-23 129.5 12.7 89 109-199 9-99 (107)
151 1why_A Hypothetical protein ri 99.8 1.3E-18 4.3E-23 128.1 11.2 79 206-291 15-95 (97)
152 2dnq_A RNA-binding protein 4B; 99.8 1.2E-18 4.1E-23 126.4 11.0 79 205-292 5-83 (90)
153 2cpz_A CUG triplet repeat RNA- 99.8 1.5E-18 5E-23 132.0 11.9 88 110-199 20-107 (115)
154 2a3j_A U1 small nuclear ribonu 99.8 6.5E-19 2.2E-23 135.5 9.8 84 205-292 26-113 (127)
155 2cqc_A Arginine/serine-rich sp 99.8 7.7E-19 2.6E-23 128.8 9.8 86 108-195 8-93 (95)
156 1x4c_A Splicing factor, argini 99.8 1.5E-18 5E-23 130.4 11.5 79 206-292 13-96 (108)
157 2cpx_A Hypothetical protein FL 99.8 2.3E-19 7.8E-24 136.5 7.2 88 205-293 22-109 (115)
158 1wel_A RNA-binding protein 12; 99.8 1.1E-19 3.8E-24 140.1 5.5 84 205-290 22-105 (124)
159 2hvz_A Splicing factor, argini 99.8 6.3E-19 2.2E-23 130.8 9.4 95 116-217 1-100 (101)
160 1fj7_A Nucleolin RBD1, protein 99.8 7E-20 2.4E-24 136.0 3.9 85 205-292 14-98 (101)
161 2dnn_A RNA-binding protein 12; 99.8 4.9E-19 1.7E-23 132.5 8.5 79 207-289 15-93 (109)
162 2lkz_A RNA-binding protein 5; 99.8 2.1E-19 7.2E-24 131.1 6.3 86 111-196 5-94 (95)
163 2e5h_A Zinc finger CCHC-type a 99.8 9E-19 3.1E-23 128.1 9.8 82 111-194 12-93 (94)
164 2dnz_A Probable RNA-binding pr 99.8 2.4E-18 8.2E-23 126.1 12.0 84 113-198 3-86 (95)
165 2dgp_A Bruno-like 4, RNA bindi 99.8 1.9E-18 6.5E-23 129.4 11.6 90 110-199 8-98 (106)
166 2dgs_A DAZ-associated protein 99.8 2.8E-18 9.6E-23 126.8 12.3 86 111-199 6-91 (99)
167 2d9p_A Polyadenylate-binding p 99.8 2.6E-18 9E-23 127.9 12.2 89 107-199 7-95 (103)
168 3bs9_A Nucleolysin TIA-1 isofo 99.8 8.5E-19 2.9E-23 126.3 9.2 82 113-196 4-85 (87)
169 3q2s_C Cleavage and polyadenyl 99.8 3.2E-19 1.1E-23 151.9 8.1 82 207-289 67-150 (229)
170 2lcw_A RNA-binding protein FUS 99.6 1.7E-20 5.7E-25 143.0 0.0 87 205-292 4-98 (116)
171 2la4_A Nuclear and cytoplasmic 99.8 8E-19 2.8E-23 130.2 9.1 76 207-289 26-101 (101)
172 3lqv_A PRE-mRNA branch site pr 99.8 5.4E-19 1.9E-23 134.4 8.2 105 112-235 5-109 (115)
173 1iqt_A AUF1, heterogeneous nuc 99.8 1.8E-19 6.2E-24 126.1 5.1 75 210-286 1-75 (75)
174 2dnm_A SRP46 splicing factor; 99.8 1.6E-18 5.6E-23 129.0 10.6 86 111-198 9-94 (103)
175 2krb_A Eukaryotic translation 99.8 2.5E-19 8.6E-24 127.3 5.9 74 208-284 1-81 (81)
176 1x4h_A RNA-binding protein 28; 99.8 2.7E-18 9.2E-23 129.6 11.9 87 111-199 11-103 (111)
177 2la6_A RNA-binding protein FUS 99.8 2.6E-18 8.8E-23 126.9 11.5 82 111-194 9-98 (99)
178 2cpj_A Non-POU domain-containi 99.8 1.7E-18 5.8E-23 128.0 10.5 81 205-292 12-92 (99)
179 1x4f_A Matrin 3; structural ge 99.8 6.8E-19 2.3E-23 131.6 8.4 81 205-292 22-105 (112)
180 2div_A TRNA selenocysteine ass 99.8 2.2E-18 7.5E-23 127.3 11.1 87 111-197 5-94 (99)
181 2e5j_A Methenyltetrahydrofolat 99.8 2E-18 6.9E-23 127.0 10.8 81 205-291 16-96 (97)
182 1whw_A Hypothetical protein ri 99.8 2.2E-18 7.6E-23 127.3 11.0 86 112-199 5-90 (99)
183 1x4g_A Nucleolysin TIAR; struc 99.8 1.6E-18 5.5E-23 130.4 10.3 82 205-293 22-103 (109)
184 2kxn_B Transformer-2 protein h 99.8 2.4E-18 8.2E-23 133.3 11.5 86 110-197 41-126 (129)
185 2do4_A Squamous cell carcinoma 99.8 3.2E-18 1.1E-22 126.7 11.7 84 111-197 13-96 (100)
186 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.2E-18 4.2E-23 124.9 9.0 81 112-194 4-84 (85)
187 3p5t_L Cleavage and polyadenyl 99.8 6E-19 2.1E-23 127.9 7.4 80 116-197 2-83 (90)
188 2lmi_A GRSF-1, G-rich sequence 99.8 2.1E-19 7.3E-24 134.7 5.0 83 205-290 8-93 (107)
189 2jrs_A RNA-binding protein 39; 99.8 4.5E-18 1.6E-22 127.6 12.3 86 110-197 21-106 (108)
190 2jvr_A Nucleolar protein 3; RN 99.8 8.7E-19 3E-23 131.4 8.3 79 207-290 27-106 (111)
191 3md1_A Nuclear and cytoplasmic 99.8 1.8E-18 6E-23 123.5 9.5 81 115-197 1-81 (83)
192 2jvo_A Nucleolar protein 3; nu 99.8 2.3E-18 7.9E-23 129.1 10.5 81 203-292 26-106 (108)
193 1p27_B RNA-binding protein 8A; 99.8 3.2E-18 1.1E-22 128.1 11.3 85 111-197 19-103 (106)
194 2m2b_A RNA-binding protein 10; 99.8 1.7E-18 6E-23 134.7 10.1 85 110-197 18-108 (131)
195 2dgt_A RNA-binding protein 30; 99.8 4.2E-18 1.4E-22 124.0 11.4 79 205-292 7-85 (92)
196 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.3E-18 4.5E-23 129.3 8.6 87 111-199 8-94 (102)
197 2cpd_A Apobec-1 stimulating pr 99.8 7.4E-18 2.5E-22 124.5 12.6 80 204-292 11-92 (99)
198 2cqd_A RNA-binding region cont 99.8 3.4E-18 1.2E-22 130.2 10.9 87 109-198 11-97 (116)
199 2xnq_A Nuclear polyadenylated 99.8 4E-18 1.4E-22 125.3 10.9 78 204-290 18-96 (97)
200 3lqv_A PRE-mRNA branch site pr 99.8 2.5E-18 8.6E-23 130.7 10.1 83 205-291 5-87 (115)
201 1nu4_A U1A RNA binding domain; 99.8 7.9E-19 2.7E-23 129.2 7.0 84 205-292 5-92 (97)
202 2x1f_A MRNA 3'-END-processing 99.8 2.3E-18 7.7E-23 126.5 9.4 83 114-198 1-83 (96)
203 2dhg_A TRNA selenocysteine ass 99.8 1.1E-17 3.8E-22 124.7 13.2 85 111-198 5-91 (104)
204 2dng_A Eukaryotic translation 99.8 4E-18 1.4E-22 126.9 10.6 86 109-198 9-94 (103)
205 2ytc_A PRE-mRNA-splicing facto 99.8 4.1E-18 1.4E-22 122.1 10.1 76 205-287 9-85 (85)
206 2dh8_A DAZ-associated protein 99.8 3.3E-18 1.1E-22 127.8 9.8 86 110-198 11-96 (105)
207 1wi8_A EIF-4B, eukaryotic tran 99.8 3.7E-18 1.3E-22 127.3 10.0 86 110-199 10-96 (104)
208 1wf1_A RNA-binding protein RAL 99.8 5.9E-18 2E-22 127.5 11.2 79 205-292 24-103 (110)
209 2j8a_A Histone-lysine N-methyl 99.8 1.9E-18 6.4E-23 129.7 8.2 80 209-289 3-96 (136)
210 3ns6_A Eukaryotic translation 99.8 1.3E-18 4.3E-23 128.8 7.3 82 113-196 4-92 (100)
211 2fy1_A RNA-binding motif prote 99.8 8.4E-18 2.9E-22 127.8 12.1 85 111-198 3-87 (116)
212 1x5t_A Splicing factor 3B subu 99.8 2.4E-18 8.3E-23 126.3 8.7 84 113-198 3-87 (96)
213 2cqi_A Nucleolysin TIAR; RNA r 99.8 8.6E-18 3E-22 125.1 11.8 87 109-199 9-95 (103)
214 1fjc_A Nucleolin RBD2, protein 99.8 1.6E-18 5.4E-23 127.4 7.6 82 205-292 13-94 (96)
215 2cpe_A RNA-binding protein EWS 99.8 4.3E-18 1.5E-22 129.0 10.2 87 111-199 11-105 (113)
216 2ywk_A Putative RNA-binding pr 99.8 2.7E-18 9.3E-23 125.8 8.8 82 111-195 12-93 (95)
217 2dha_A FLJ20171 protein; RRM d 99.8 8.9E-19 3E-23 133.9 6.2 82 206-290 21-106 (123)
218 2kvi_A Nuclear polyadenylated 99.7 4E-18 1.4E-22 125.1 9.3 80 205-293 7-87 (96)
219 1x4e_A RNA binding motif, sing 99.7 1.7E-18 5.7E-23 124.2 7.1 81 113-195 3-83 (85)
220 2cq3_A RNA-binding protein 9; 99.7 1.6E-17 5.4E-22 123.6 12.6 87 109-199 9-95 (103)
221 2cpf_A RNA binding motif prote 99.7 4.1E-18 1.4E-22 125.6 9.3 85 113-199 3-90 (98)
222 2cqp_A RNA-binding protein 12; 99.7 2.4E-18 8.4E-23 126.8 8.1 84 111-196 11-94 (98)
223 1sjr_A Polypyrimidine tract-bi 99.7 5.4E-18 1.8E-22 134.6 10.5 79 207-290 45-125 (164)
224 2dnp_A RNA-binding protein 14; 99.7 5.8E-18 2E-22 122.7 9.9 79 205-292 6-84 (90)
225 1sjq_A Polypyrimidine tract-bi 99.7 6.9E-18 2.4E-22 124.3 10.3 81 111-199 12-94 (105)
226 1s79_A Lupus LA protein; RRM, 99.7 5E-18 1.7E-22 125.9 9.6 80 112-195 8-87 (103)
227 1oo0_B CG8781-PA, drosophila Y 99.7 4.6E-18 1.6E-22 128.2 9.5 86 111-198 22-107 (110)
228 2yh0_A Splicing factor U2AF 65 99.7 1.3E-17 4.5E-22 139.1 13.2 114 207-340 3-127 (198)
229 2xs2_A Deleted in azoospermia- 99.7 1.1E-18 3.6E-23 129.8 5.8 82 207-292 8-89 (102)
230 2hgm_A HNRPF protein, heteroge 99.7 1E-18 3.5E-23 133.8 5.8 81 205-289 39-121 (126)
231 1wex_A Hypothetical protein (r 99.7 1.6E-17 5.4E-22 123.3 11.9 83 111-199 11-93 (104)
232 2cqh_A IGF-II mRNA-binding pro 99.7 3.6E-18 1.2E-22 124.7 8.3 79 206-292 6-86 (93)
233 2f3j_A RNA and export factor b 99.7 4.3E-18 1.5E-22 139.1 9.4 84 205-290 85-168 (177)
234 2g4b_A Splicing factor U2AF 65 99.7 6.8E-18 2.3E-22 137.6 10.6 94 207-340 3-107 (172)
235 3sde_A Paraspeckle component 1 99.7 9.7E-18 3.3E-22 146.2 12.2 91 205-340 19-109 (261)
236 2do0_A HnRNP M, heterogeneous 99.7 2.3E-17 8E-22 125.1 12.5 84 111-197 11-94 (114)
237 3n9u_C Cleavage and polyadenyl 99.7 5.5E-18 1.9E-22 135.5 9.4 82 113-196 53-136 (156)
238 2dgv_A HnRNP M, heterogeneous 99.7 2.7E-17 9.1E-22 119.7 12.1 83 112-198 5-87 (92)
239 1whx_A Hypothetical protein ri 99.7 4.1E-18 1.4E-22 128.5 7.9 77 207-290 9-85 (111)
240 1x4d_A Matrin 3; structural ge 99.7 4.9E-18 1.7E-22 125.1 8.1 83 110-198 10-93 (102)
241 1wg1_A KIAA1579 protein, homol 99.7 8.4E-18 2.9E-22 121.3 9.2 76 207-290 4-79 (88)
242 2cqg_A TDP-43, TAR DNA-binding 99.7 1.8E-17 6.2E-22 123.3 11.1 87 109-199 9-95 (103)
243 1p1t_A Cleavage stimulation fa 99.7 3.7E-18 1.3E-22 127.3 7.3 84 112-197 5-88 (104)
244 3s7r_A Heterogeneous nuclear r 99.7 6.8E-18 2.3E-22 121.5 8.4 81 111-194 7-87 (87)
245 2kt5_A RNA and export factor-b 99.7 4.4E-17 1.5E-21 125.5 13.5 84 111-197 31-114 (124)
246 1x5p_A Negative elongation fac 99.7 3E-17 1E-21 120.7 11.9 79 205-292 12-90 (97)
247 2ek1_A RNA-binding protein 12; 99.7 2.5E-18 8.4E-23 126.0 5.7 81 113-195 13-93 (95)
248 3zzy_A Polypyrimidine tract-bi 99.7 2E-17 6.9E-22 126.5 10.9 77 209-291 29-108 (130)
249 3ex7_B RNA-binding protein 8A; 99.7 1.8E-17 6.1E-22 128.1 10.7 86 111-198 18-103 (126)
250 2e44_A Insulin-like growth fac 99.7 1.1E-17 3.9E-22 122.7 9.1 80 206-290 13-93 (96)
251 3ucg_A Polyadenylate-binding p 99.7 1.1E-17 3.8E-22 120.9 8.9 80 114-196 5-84 (89)
252 2rs2_A Musashi-1, RNA-binding 99.7 7.1E-18 2.4E-22 126.8 8.0 85 110-197 20-104 (109)
253 2mss_A Protein (musashi1); RNA 99.7 6.8E-18 2.3E-22 117.9 7.4 75 117-194 1-75 (75)
254 3ulh_A THO complex subunit 4; 99.7 1.5E-17 5.1E-22 124.7 9.7 82 111-195 25-106 (107)
255 2j76_E EIF-4B, EIF4B, eukaryot 99.7 6.9E-18 2.4E-22 124.8 7.5 83 111-197 15-98 (100)
256 1x5o_A RNA binding motif, sing 99.7 6E-17 2E-21 122.8 12.8 84 111-195 21-110 (114)
257 2cq1_A PTB-like protein L; RRM 99.7 1.6E-17 5.3E-22 122.5 9.3 82 109-198 9-92 (101)
258 1wg5_A Heterogeneous nuclear r 99.7 2.9E-17 9.8E-22 122.4 10.6 82 111-196 11-93 (104)
259 2e5g_A U6 snRNA-specific termi 99.7 1.9E-17 6.7E-22 121.0 9.5 79 207-292 7-85 (94)
260 1wez_A HnRNP H', FTP-3, hetero 99.7 2.1E-17 7.2E-22 122.5 9.7 82 111-197 11-92 (102)
261 3r27_A HnRNP L, heterogeneous 99.7 1E-17 3.6E-22 122.1 7.9 81 111-197 17-97 (100)
262 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.7E-17 5.7E-22 130.7 9.7 82 111-194 59-140 (140)
263 2lea_A Serine/arginine-rich sp 99.7 1E-17 3.4E-22 130.9 8.2 86 111-198 43-128 (135)
264 2diu_A KIAA0430 protein; struc 99.7 2.2E-17 7.5E-22 117.1 9.1 75 207-292 7-87 (96)
265 4a8x_A RNA-binding protein wit 99.7 1.3E-17 4.6E-22 120.2 8.3 81 114-196 3-84 (88)
266 1x4a_A Splicing factor, argini 99.7 7.4E-17 2.5E-21 121.3 12.7 83 111-198 18-100 (109)
267 3egn_A RNA-binding protein 40; 99.7 3E-18 1E-22 135.4 5.3 84 205-292 42-133 (143)
268 1h2v_Z 20 kDa nuclear CAP bind 99.7 3.1E-17 1.1E-21 131.6 10.9 86 111-198 35-120 (156)
269 2cq2_A Hypothetical protein LO 99.7 1E-17 3.6E-22 125.2 7.3 80 205-291 22-108 (114)
270 1uaw_A Mouse-musashi-1; RNP-ty 99.7 7.6E-18 2.6E-22 118.3 6.3 76 116-194 1-76 (77)
271 2dis_A Unnamed protein product 99.7 4.2E-17 1.4E-21 122.6 10.6 85 113-199 6-94 (109)
272 2cpy_A RNA-binding protein 12; 99.7 8.9E-18 3E-22 127.3 6.7 82 111-196 11-93 (114)
273 2ki2_A SS-DNA binding protein 99.7 5.9E-18 2E-22 122.7 5.5 79 116-197 2-80 (90)
274 2cq4_A RNA binding motif prote 99.7 7.5E-18 2.6E-22 127.8 6.2 82 112-196 22-103 (114)
275 2dgx_A KIAA0430 protein; RRM d 99.7 3.2E-17 1.1E-21 120.2 9.3 81 112-197 6-90 (96)
276 2err_A Ataxin-2-binding protei 99.7 1.9E-17 6.4E-22 124.5 8.1 84 109-196 23-106 (109)
277 2ad9_A Polypyrimidine tract-bi 99.7 6.5E-17 2.2E-21 122.2 11.0 82 110-199 26-109 (119)
278 3beg_B Splicing factor, argini 99.7 2.2E-17 7.5E-22 125.3 8.5 77 207-291 15-96 (115)
279 2a3j_A U1 small nuclear ribonu 99.7 5.9E-17 2E-21 124.5 10.9 81 112-197 26-110 (127)
280 2dgw_A Probable RNA-binding pr 99.7 3.7E-17 1.3E-21 118.7 9.3 82 111-197 6-87 (91)
281 3d2w_A TAR DNA-binding protein 99.7 3.5E-17 1.2E-21 118.1 9.0 77 205-291 8-86 (89)
282 2cpi_A CCR4-NOT transcription 99.7 2E-17 7E-22 124.7 8.1 87 110-198 10-102 (111)
283 2kn4_A Immunoglobulin G-bindin 99.7 5E-17 1.7E-21 130.7 10.7 86 111-198 66-151 (158)
284 2cpj_A Non-POU domain-containi 99.7 6.8E-17 2.3E-21 119.2 10.5 81 110-198 10-90 (99)
285 2pe8_A Splicing factor 45; RRM 99.7 9.2E-17 3.1E-21 119.3 11.2 83 205-288 5-93 (105)
286 1why_A Hypothetical protein ri 99.7 1.7E-16 5.9E-21 116.6 12.4 81 111-197 13-93 (97)
287 2db1_A Heterogeneous nuclear r 99.7 1.8E-17 6.1E-22 126.4 7.1 81 111-195 13-96 (118)
288 2e5i_A Heterogeneous nuclear r 99.7 1.9E-16 6.6E-21 120.6 12.7 76 209-291 26-104 (124)
289 2krb_A Eukaryotic translation 99.7 3.3E-17 1.1E-21 116.2 7.8 73 115-191 1-80 (81)
290 2lmi_A GRSF-1, G-rich sequence 99.7 2.4E-17 8.3E-22 123.4 7.5 81 111-195 7-90 (107)
291 1x4b_A Heterogeneous nuclear r 99.7 1.6E-17 5.6E-22 126.4 6.1 86 111-199 23-108 (116)
292 2fc8_A NCL protein; structure 99.7 7.7E-17 2.6E-21 119.6 9.6 85 110-199 10-94 (102)
293 2fc9_A NCL protein; structure 99.7 4.8E-17 1.7E-21 120.5 8.4 83 110-198 10-92 (101)
294 1x4c_A Splicing factor, argini 99.7 1.4E-16 4.8E-21 119.5 11.0 81 112-199 12-95 (108)
295 2hgl_A HNRPF protein, heteroge 99.7 2.7E-17 9.4E-22 127.9 7.0 81 111-195 40-123 (136)
296 2jwn_A Embryonic polyadenylate 99.7 6.1E-17 2.1E-21 124.7 8.9 82 113-197 34-115 (124)
297 2dnq_A RNA-binding protein 4B; 99.7 2.4E-16 8E-21 114.2 11.4 78 112-199 5-82 (90)
298 1sjr_A Polypyrimidine tract-bi 99.7 1.7E-16 5.8E-21 126.0 11.5 83 113-199 44-126 (164)
299 2wbr_A GW182, gawky, LD47780P; 99.7 6.6E-17 2.3E-21 113.6 8.0 73 114-194 6-78 (89)
300 1wel_A RNA-binding protein 12; 99.7 3E-17 1E-21 126.4 6.7 83 111-196 21-103 (124)
301 2dnl_A Cytoplasmic polyadenyla 99.7 7.3E-17 2.5E-21 122.3 8.8 81 206-290 6-89 (114)
302 3q2s_C Cleavage and polyadenyl 99.7 4.6E-17 1.6E-21 138.6 8.5 80 114-195 67-148 (229)
303 2dnn_A RNA-binding protein 12; 99.7 3.9E-17 1.3E-21 122.2 7.1 79 112-195 13-91 (109)
304 1iqt_A AUF1, heterogeneous nuc 99.7 3.2E-17 1.1E-21 114.5 6.2 74 117-193 1-74 (75)
305 1x4f_A Matrin 3; structural ge 99.7 1E-16 3.4E-21 119.8 9.1 81 111-197 21-102 (112)
306 1fj7_A Nucleolin RBD1, protein 99.7 2.3E-17 7.9E-22 122.3 5.6 82 112-197 14-95 (101)
307 2ytc_A PRE-mRNA-splicing facto 99.7 1.3E-16 4.4E-21 114.2 9.4 76 111-194 8-84 (85)
308 2e5j_A Methenyltetrahydrofolat 99.7 3.7E-16 1.3E-20 114.8 11.8 80 111-197 15-94 (97)
309 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.1E-16 3.8E-21 129.5 9.9 87 111-199 68-154 (165)
310 2nlw_A Eukaryotic translation 99.7 8.5E-17 2.9E-21 120.0 8.5 82 111-196 11-99 (105)
311 2bz2_A Negative elongation fac 99.7 1.6E-16 5.6E-21 121.4 10.0 79 205-292 36-114 (121)
312 2voo_A Lupus LA protein; RNA-b 99.7 1.8E-16 6.2E-21 131.4 10.9 121 166-289 63-187 (193)
313 2jvo_A Nucleolar protein 3; nu 99.7 1.2E-16 4.1E-21 119.7 8.9 79 109-197 25-103 (108)
314 1wf0_A TDP-43, TAR DNA-binding 99.7 5E-17 1.7E-21 117.2 6.3 78 207-292 4-81 (88)
315 2cpx_A Hypothetical protein FL 99.7 7E-17 2.4E-21 122.6 7.2 87 111-199 21-107 (115)
316 2hzc_A Splicing factor U2AF 65 99.7 1.1E-16 3.8E-21 115.1 7.5 71 207-285 5-86 (87)
317 2jvr_A Nucleolar protein 3; RN 99.7 8.1E-17 2.8E-21 120.7 6.6 81 111-197 24-105 (111)
318 2dgu_A Heterogeneous nuclear r 99.7 4.4E-16 1.5E-20 115.7 10.3 78 112-199 8-85 (103)
319 2la4_A Nuclear and cytoplasmic 99.7 2.6E-16 9E-21 116.5 9.1 76 113-196 25-100 (101)
320 2hgm_A HNRPF protein, heteroge 99.7 1.7E-16 5.7E-21 121.5 8.1 80 111-195 38-119 (126)
321 1x4g_A Nucleolysin TIAR; struc 99.7 3.9E-16 1.3E-20 117.3 9.9 80 112-199 22-101 (109)
322 2hgn_A Heterogeneous nuclear r 99.7 6.8E-17 2.3E-21 126.0 5.9 81 111-196 42-122 (139)
323 2e5i_A Heterogeneous nuclear r 99.7 8.1E-16 2.8E-20 117.1 11.4 79 114-198 24-103 (124)
324 2xnq_A Nuclear polyadenylated 99.7 4.9E-16 1.7E-20 114.0 9.5 76 111-196 18-94 (97)
325 2lcw_A RNA-binding protein FUS 99.5 9.2E-18 3.2E-22 127.7 0.0 86 112-199 4-97 (116)
326 2kvi_A Nuclear polyadenylated 99.6 5.7E-16 2E-20 113.5 9.6 78 111-198 6-84 (96)
327 2e44_A Insulin-like growth fac 99.6 7.1E-16 2.4E-20 113.0 10.1 80 112-197 12-92 (96)
328 2f3j_A RNA and export factor b 99.6 5.1E-16 1.7E-20 126.8 10.2 83 111-196 84-166 (177)
329 2dnp_A RNA-binding protein 14; 99.6 8E-16 2.7E-20 111.3 9.9 78 111-198 5-82 (90)
330 2dha_A FLJ20171 protein; RRM d 99.6 1.7E-16 5.9E-21 121.2 6.6 78 113-194 21-102 (123)
331 1whx_A Hypothetical protein ri 99.6 2.5E-16 8.6E-21 118.6 7.2 76 113-196 8-83 (111)
332 2xs2_A Deleted in azoospermia- 99.6 9.8E-17 3.3E-21 119.1 4.8 81 112-197 6-86 (102)
333 2cpd_A Apobec-1 stimulating pr 99.6 1.3E-15 4.5E-20 112.3 10.8 79 110-198 10-90 (99)
334 2dgt_A RNA-binding protein 30; 99.6 7.1E-16 2.4E-20 112.1 9.2 78 111-198 6-83 (92)
335 1nu4_A U1A RNA binding domain; 99.6 1.7E-16 5.8E-21 116.6 5.9 81 112-197 5-89 (97)
336 1wf1_A RNA-binding protein RAL 99.6 9.3E-16 3.2E-20 115.4 10.1 77 111-197 23-100 (110)
337 3zzy_A Polypyrimidine tract-bi 99.6 5E-16 1.7E-20 118.7 8.6 85 113-202 26-111 (130)
338 2i2y_A Fusion protein consists 99.6 1.1E-15 3.7E-20 121.7 10.7 80 111-197 69-148 (150)
339 2e5g_A U6 snRNA-specific termi 99.6 2E-15 6.9E-20 110.1 11.0 78 112-197 5-82 (94)
340 2dit_A HIV TAT specific factor 99.6 2.6E-15 8.9E-20 113.2 11.3 84 204-292 11-105 (112)
341 2cq2_A Hypothetical protein LO 99.6 6.9E-16 2.4E-20 115.3 8.0 78 112-195 22-104 (114)
342 2diu_A KIAA0430 protein; struc 99.6 3.8E-15 1.3E-19 105.6 11.3 76 113-200 6-87 (96)
343 3u1l_A PRE-mRNA-splicing facto 99.6 6.5E-16 2.2E-20 130.9 8.3 81 205-292 131-232 (240)
344 1x5p_A Negative elongation fac 99.6 2.7E-15 9.4E-20 110.1 10.4 79 110-198 10-88 (97)
345 3v4m_A Splicing factor U2AF 65 99.6 1.2E-15 4.1E-20 113.4 8.2 83 206-289 3-97 (105)
346 2dnl_A Cytoplasmic polyadenyla 99.6 1.1E-15 3.7E-20 115.8 8.2 64 113-177 6-72 (114)
347 3d2w_A TAR DNA-binding protein 99.6 7.1E-16 2.4E-20 111.2 6.4 78 111-197 7-84 (89)
348 2j8a_A Histone-lysine N-methyl 99.6 4.5E-16 1.5E-20 116.8 5.5 78 116-195 3-94 (136)
349 1fjc_A Nucleolin RBD2, protein 99.6 3.8E-16 1.3E-20 114.5 4.7 80 111-197 12-91 (96)
350 2cqh_A IGF-II mRNA-binding pro 99.6 1.6E-15 5.5E-20 110.5 7.9 78 112-198 5-84 (93)
351 3ue2_A Poly(U)-binding-splicin 99.6 3.3E-15 1.1E-19 113.1 8.6 81 207-288 19-108 (118)
352 3beg_B Splicing factor, argini 99.6 2.4E-15 8.1E-20 114.0 7.8 67 113-186 14-80 (115)
353 1wg1_A KIAA1579 protein, homol 99.6 1.4E-15 4.7E-20 109.6 6.0 75 113-196 3-77 (88)
354 3egn_A RNA-binding protein 40; 99.6 5.3E-16 1.8E-20 122.5 4.1 81 112-197 42-130 (143)
355 1jmt_A Splicing factor U2AF 35 99.6 6E-16 2.1E-20 114.8 3.8 72 213-286 20-103 (104)
356 3pgw_S U1-70K; protein-RNA com 99.6 3.6E-15 1.2E-19 138.6 9.9 84 111-196 98-181 (437)
357 2hzc_A Splicing factor U2AF 65 99.6 6.2E-15 2.1E-19 105.8 7.3 72 112-192 3-85 (87)
358 2bz2_A Negative elongation fac 99.6 1.6E-14 5.6E-19 110.2 9.4 78 111-198 35-112 (121)
359 2pe8_A Splicing factor 45; RRM 99.5 2.2E-14 7.6E-19 106.4 9.3 81 113-195 6-92 (105)
360 1wf0_A TDP-43, TAR DNA-binding 99.5 6.4E-15 2.2E-19 106.1 5.9 78 113-199 3-80 (88)
361 2d9o_A DNAJ (HSP40) homolog, s 99.5 1.2E-13 4E-18 101.2 11.2 67 218-292 27-93 (100)
362 2voo_A Lupus LA protein; RNA-b 99.5 4E-14 1.4E-18 117.2 8.4 78 114-195 108-185 (193)
363 3u1l_A PRE-mRNA-splicing facto 99.5 5.8E-14 2E-18 118.9 8.6 80 112-197 131-229 (240)
364 2dit_A HIV TAT specific factor 99.5 2.7E-13 9.3E-18 102.1 10.8 82 110-197 10-102 (112)
365 3tht_A Alkylated DNA repair pr 99.5 1.6E-13 5.5E-18 122.4 9.1 76 205-287 15-97 (345)
366 3s6e_A RNA-binding protein 39; 99.5 2.8E-13 9.6E-18 101.7 9.0 78 207-289 6-93 (114)
367 3v4m_A Splicing factor U2AF 65 99.4 5.6E-13 1.9E-17 98.9 7.2 81 113-195 3-95 (105)
368 1jmt_A Splicing factor U2AF 35 99.4 1.6E-13 5.6E-18 101.6 3.0 72 120-194 20-103 (104)
369 3ue2_A Poly(U)-binding-splicin 99.4 1.2E-12 4E-17 99.0 6.9 80 114-195 19-107 (118)
370 2d9o_A DNAJ (HSP40) homolog, s 99.3 1.2E-11 4E-16 90.5 11.8 77 113-198 8-91 (100)
371 3tht_A Alkylated DNA repair pr 99.3 1.5E-12 5.1E-17 116.2 7.6 111 111-230 14-130 (345)
372 2dnr_A Synaptojanin-1; RRM dom 99.3 8.8E-12 3E-16 87.6 7.3 73 207-289 6-86 (91)
373 1owx_A Lupus LA protein, SS-B, 99.2 2.7E-11 9.2E-16 90.9 9.0 77 205-288 15-95 (121)
374 3s6e_A RNA-binding protein 39; 99.2 8.3E-11 2.8E-15 88.2 7.9 77 113-195 5-91 (114)
375 1ufw_A Synaptojanin 2; RNP dom 99.1 1.1E-10 3.6E-15 82.4 5.7 73 206-288 13-94 (95)
376 3dxb_A Thioredoxin N-terminall 99.1 1.8E-10 6.3E-15 97.5 8.4 69 219-288 140-212 (222)
377 1owx_A Lupus LA protein, SS-B, 99.0 9.7E-10 3.3E-14 82.4 9.0 63 111-179 14-78 (121)
378 2dnr_A Synaptojanin-1; RRM dom 98.8 6.9E-09 2.4E-13 72.9 5.5 72 113-195 5-84 (91)
379 2l9w_A U4/U6 snRNA-associated- 98.8 5.2E-08 1.8E-12 70.0 9.2 72 207-285 20-96 (117)
380 3dxb_A Thioredoxin N-terminall 98.7 3.6E-08 1.2E-12 83.2 7.8 79 115-195 124-211 (222)
381 1ufw_A Synaptojanin 2; RNP dom 98.6 4.4E-08 1.5E-12 69.1 4.6 71 113-194 13-92 (95)
382 2dhx_A Poly (ADP-ribose) polym 98.5 1.5E-06 5.3E-11 62.0 10.6 75 206-290 6-85 (104)
383 2l9w_A U4/U6 snRNA-associated- 98.4 1E-06 3.4E-11 63.4 7.8 72 112-191 18-94 (117)
384 2dhx_A Poly (ADP-ribose) polym 98.1 4.2E-05 1.5E-09 54.6 10.7 89 113-221 6-99 (104)
385 1wey_A Calcipressin 1; structu 98.1 8.8E-06 3E-10 58.4 6.3 76 207-289 4-84 (104)
386 1uw4_A UPF3X; nonsense mediate 97.9 9.7E-05 3.3E-09 52.1 8.6 68 209-277 2-71 (91)
387 1whv_A Poly(A)-specific ribonu 97.9 0.00012 4.1E-09 51.6 8.9 57 113-178 14-70 (100)
388 1whv_A Poly(A)-specific ribonu 97.7 0.00015 5E-09 51.1 7.8 56 207-272 15-70 (100)
389 1uw4_A UPF3X; nonsense mediate 97.6 0.00022 7.4E-09 50.3 7.4 68 116-183 2-71 (91)
390 1wey_A Calcipressin 1; structu 97.5 0.00031 1E-08 50.4 6.8 75 114-196 4-83 (104)
391 1wwh_A Nucleoporin 35, nucleop 97.4 0.00052 1.8E-08 50.6 7.3 73 207-288 23-96 (119)
392 3ctr_A Poly(A)-specific ribonu 97.2 0.00046 1.6E-08 48.8 4.8 54 116-178 7-60 (101)
393 3ctr_A Poly(A)-specific ribonu 97.1 0.00052 1.8E-08 48.5 4.6 53 210-272 8-60 (101)
394 2l08_A Regulator of nonsense t 97.1 0.00068 2.3E-08 48.0 5.1 70 207-277 8-79 (97)
395 1wwh_A Nucleoporin 35, nucleop 96.7 0.0044 1.5E-07 45.7 6.7 64 112-183 21-84 (119)
396 2l08_A Regulator of nonsense t 96.6 0.0016 5.6E-08 46.1 3.5 70 114-183 8-79 (97)
397 3pq1_A Poly(A) RNA polymerase; 96.3 0.0019 6.4E-08 59.6 2.9 56 207-269 52-107 (464)
398 3pq1_A Poly(A) RNA polymerase; 96.2 0.0025 8.6E-08 58.8 3.3 56 114-175 52-107 (464)
399 3p3d_A Nucleoporin 53; structu 96.0 0.0064 2.2E-07 45.4 3.9 78 209-289 8-99 (132)
400 3p3d_A Nucleoporin 53; structu 91.9 0.15 5E-06 38.1 3.8 69 114-184 6-88 (132)
401 3d45_A Poly(A)-specific ribonu 91.8 0.65 2.2E-05 43.5 9.0 56 115-179 440-495 (507)
402 3d45_A Poly(A)-specific ribonu 88.7 0.72 2.5E-05 43.2 6.4 55 208-272 440-494 (507)
403 2g0c_A ATP-dependent RNA helic 77.6 4.5 0.00016 26.7 5.1 69 210-287 2-75 (76)
404 1xn9_A 30S ribosomal protein S 68.6 13 0.00045 26.2 5.7 49 218-267 28-80 (101)
405 4eyt_A Telomerase associated p 64.0 31 0.0011 23.4 8.4 58 113-178 10-67 (129)
406 1ywx_A 30S ribosomal protein S 64.0 13 0.00046 26.2 5.0 48 218-266 28-79 (102)
407 2v94_A RPS24, 30S ribosomal pr 63.0 14 0.00048 26.4 5.1 48 218-266 37-88 (107)
408 2cu1_A Mitogen-activated prote 59.7 14 0.00048 25.8 4.3 68 215-291 23-90 (103)
409 3u5c_Y RP50, 40S ribosomal pro 58.7 29 0.00099 25.8 6.2 48 218-266 33-84 (135)
410 2g1d_A 30S ribosomal protein S 55.2 3.8 0.00013 28.9 0.9 47 218-265 29-79 (98)
411 2xzm_P RPS24E; ribosome, trans 47.9 27 0.00092 26.4 4.6 48 218-266 31-82 (149)
412 3j21_T 50S ribosomal protein L 47.2 36 0.0012 23.2 4.8 57 211-270 25-82 (86)
413 4eyt_A Telomerase associated p 45.7 68 0.0023 21.8 6.5 69 207-284 11-86 (129)
414 4e8u_A Putative uncharacterize 42.1 54 0.0019 25.5 5.7 55 210-268 14-80 (172)
415 1qb3_A Cyclin-dependent kinase 39.5 6.6 0.00023 29.4 0.2 10 10-19 107-116 (150)
416 2c60_A Human mitogen-activated 37.2 72 0.0025 22.3 5.0 62 215-285 46-107 (111)
417 2jrh_A Mitogen-activated prote 31.0 1E+02 0.0036 20.9 4.9 66 215-289 19-84 (94)
418 4e8u_A Putative uncharacterize 30.7 97 0.0033 24.1 5.5 56 117-175 14-81 (172)
419 2npt_B Mitogen-activated prote 30.5 1.3E+02 0.0046 20.7 5.8 62 215-285 35-96 (100)
420 2i9x_A Putative septation prot 30.1 64 0.0022 22.0 3.9 26 235-260 5-30 (87)
421 3u5e_X 60S ribosomal protein L 29.6 65 0.0022 24.2 4.1 57 211-270 81-138 (142)
422 2i9x_A Putative septation prot 28.9 65 0.0022 21.9 3.7 26 141-166 5-30 (87)
423 2hiy_A Hypothetical protein; C 28.4 1E+02 0.0035 24.1 5.5 122 116-258 7-143 (183)
424 4a17_R RPL23A, 60S ribosomal p 28.1 68 0.0023 24.3 4.1 57 211-270 89-146 (150)
425 4bby_A Alkyldihydroxyacetoneph 27.4 52 0.0018 31.7 4.3 58 214-272 349-409 (658)
426 1vq8_S 50S ribosomal protein L 26.8 59 0.002 22.0 3.2 55 211-268 24-79 (85)
427 3iz6_U 40S ribosomal protein S 26.2 15 0.00051 27.5 0.1 47 218-265 38-89 (138)
428 1x8d_A Hypothetical protein YI 25.9 1.3E+02 0.0045 21.1 5.1 34 223-260 27-60 (104)
429 2ia9_A Putative septation prot 25.6 82 0.0028 22.0 3.9 26 235-260 5-30 (100)
430 2i9z_A Putative septation prot 25.1 86 0.0029 22.2 3.9 26 235-260 5-30 (105)
431 2ia9_A Putative septation prot 25.0 81 0.0028 22.1 3.7 26 141-166 5-30 (100)
432 2i9z_A Putative septation prot 24.8 84 0.0029 22.2 3.8 26 141-166 5-30 (105)
433 3iz5_X 60S ribosomal protein L 22.4 63 0.0021 24.5 2.9 55 211-268 91-146 (152)
434 2yko_A LINE-1 ORF1P; RNA-bindi 22.0 2.1E+02 0.0071 23.4 6.1 80 207-287 51-150 (233)
435 2zkr_s 60S ribosomal protein L 21.9 1E+02 0.0035 23.5 4.0 56 211-269 95-151 (156)
436 3fut_A Dimethyladenosine trans 21.4 81 0.0028 26.5 3.9 33 115-148 110-142 (271)
437 3lpe_A Putative transcription 21.1 69 0.0023 21.9 2.8 33 236-273 40-72 (92)
438 2eqj_A Metal-response element- 20.7 49 0.0017 21.2 1.7 11 250-260 40-50 (66)
439 3mfb_A Uncharacterized protein 20.7 1.3E+02 0.0043 23.0 4.4 37 220-257 3-42 (157)
440 2gu3_A YPMB protein; APC1927, 20.7 1E+02 0.0035 22.8 3.9 48 213-260 68-127 (136)
441 1vd2_A Protein kinase C, IOTA 20.3 2.1E+02 0.0072 19.4 5.7 56 211-271 17-74 (89)
442 4a8j_B Elongator complex prote 20.1 2.5E+02 0.0084 23.5 6.3 50 114-163 165-222 (270)
443 3fry_A Probable copper-exporti 20.1 1.7E+02 0.0056 18.1 5.6 55 115-176 6-60 (73)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=2.3e-38 Score=268.98 Aligned_cols=172 Identities=27% Similarity=0.510 Sum_probs=152.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCccc
Q 019392 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (341)
Q Consensus 112 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~ 191 (341)
..+.++|||+|||+++|+++|+++|+.||+|.+|+|++|+.+++++|||||+|.+.++|.+|++.+++..+ .++.+++
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~--~g~~i~~ 89 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVI--KGKPVRI 89 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhc--CCccccc
Confidence 35678999999999999999999999999999999999999999999999999999999999999999998 6677777
Q ss_pred ccccccCCCCccccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHh
Q 019392 192 NWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEM 271 (341)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l 271 (341)
.++.... ........+|||+|||+++++++|+++|+ .||.|.+|+|++|. +.++|||||+|.+.++|.+||+.|
T Consensus 90 ~~~~~~~---~~~~~~~~~l~v~nl~~~~t~~~l~~~F~-~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~l 163 (213)
T 4f02_A 90 MWSQRDP---SLRKSGVGNIFIKNLDKSIDNKALYDTFS-AFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 163 (213)
T ss_dssp EECCCCT---HHHHHCTTEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHH
T ss_pred ccccccc---cccccccccceECCcccccHHHHHHHHHh-hcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHh
Confidence 7765332 12223456899999999999999999996 99999999999984 457999999999999999999999
Q ss_pred CCeeecCccEEEEecCCCCC
Q 019392 272 NGVYCSSRPMRIDVATPKKA 291 (341)
Q Consensus 272 ~~~~i~g~~i~v~~a~~k~~ 291 (341)
||..|+|+.|+|.|+.++..
T Consensus 164 ng~~~~g~~i~V~~a~~~~~ 183 (213)
T 4f02_A 164 NGMLLNDRKVFVGRFKSRKE 183 (213)
T ss_dssp TTCEETTEECEEEECCCHHH
T ss_pred CCCEECCEEEEEEEcCCCcc
Confidence 99999999999999988643
No 2
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.3e-37 Score=248.58 Aligned_cols=166 Identities=31% Similarity=0.605 Sum_probs=152.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCccccccc
Q 019392 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT 195 (341)
Q Consensus 116 ~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~~~ 195 (341)
|+|||+|||.++|+++|+++|+.||.|.+|+++.++ +++++|||||+|.+.++|.+|++.+++..+ .++.+++.|+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~--~g~~i~v~~~~ 77 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQI--ENNIVKINWAF 77 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEECC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCcc--CCCeeEEEEcC
Confidence 689999999999999999999999999999999997 578999999999999999999999999999 67888888876
Q ss_pred ccCCCCccccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCee
Q 019392 196 FSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY 275 (341)
Q Consensus 196 ~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~ 275 (341)
.... ......++|||+|||.++++++|+++|+ .||.|.++.++.++.++.++|||||+|.+.++|.+|++.|||..
T Consensus 78 ~~~~---~~~~~~~~l~v~nl~~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 153 (166)
T 3md3_A 78 QSQQ---SSSDDTFNLFVGDLNVNVDDETLRNAFK-DFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQD 153 (166)
T ss_dssp CCCC---CCCTTCEEEEEESCCTTCCHHHHHHHHT-TSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCE
T ss_pred CCCC---CCCCCCceEEECCCCCCCCHHHHHHHHh-ccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCc
Confidence 5433 2344677999999999999999999996 99999999999999999999999999999999999999999999
Q ss_pred ecCccEEEEecCC
Q 019392 276 CSSRPMRIDVATP 288 (341)
Q Consensus 276 i~g~~i~v~~a~~ 288 (341)
++|+.|+|+|+++
T Consensus 154 ~~g~~i~v~~a~~ 166 (166)
T 3md3_A 154 LNGRPLRINWAAK 166 (166)
T ss_dssp ETTEECEEEESCC
T ss_pred cCCcEEEEEecCC
Confidence 9999999999864
No 3
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=7.9e-37 Score=256.06 Aligned_cols=179 Identities=18% Similarity=0.368 Sum_probs=151.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCc
Q 019392 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (341)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~ 189 (341)
......++|||+|||+++|+++|+++|+.||.|.+|+++.++.+|.++|||||+|.+.++|.+|++. ++..+ .++.+
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~--~g~~l 84 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKV--DGRVV 84 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEE--TTEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEE--CCEEe
Confidence 3557889999999999999999999999999999999999999999999999999999999999975 88888 66777
Q ss_pred ccccccccCCCCc-cccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHH
Q 019392 190 RLNWATFSGSDRR-TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAM 268 (341)
Q Consensus 190 ~~~~~~~~~~~~~-~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al 268 (341)
.+.++........ ......++|||+|||+++++++|+++|+ .||.|.+|+|+.++.+++++|||||+|.+.++|.+||
T Consensus 85 ~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~ 163 (196)
T 1l3k_A 85 EPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFE-QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163 (196)
T ss_dssp EEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHT-TTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred eeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHh-cCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHH
Confidence 7777664432222 2234568999999999999999999996 9999999999999889999999999999999999999
Q ss_pred HHhCCeeecCccEEEEecCCCCCCC
Q 019392 269 TEMNGVYCSSRPMRIDVATPKKASG 293 (341)
Q Consensus 269 ~~l~~~~i~g~~i~v~~a~~k~~~~ 293 (341)
+. ++..|+|+.|.|+|+.++....
T Consensus 164 ~~-~~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 164 IQ-KYHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp HC-SCCEETTEECEEEECC------
T ss_pred Hh-CCcEECCEEEEEEecCChhHhc
Confidence 66 8999999999999999987664
No 4
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=1.5e-36 Score=258.20 Aligned_cols=177 Identities=20% Similarity=0.392 Sum_probs=156.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcccc
Q 019392 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (341)
Q Consensus 113 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (341)
...++|||+|||+++|+++|+++|+.||.|.+|++++++.+|+++|||||+|.+.++|.+|++.|++..+ .++.+++.
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~--~g~~l~v~ 103 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVML--GGRNIKVG 103 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCC--C-CCCEEE
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCee--CCeeEEEe
Confidence 4678999999999999999999999999999999999998999999999999999999999999999999 66777777
Q ss_pred cccccCCCCc------cccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHH
Q 019392 193 WATFSGSDRR------TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSR 266 (341)
Q Consensus 193 ~~~~~~~~~~------~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~ 266 (341)
++........ ......++|||+|||.++++++|+++|+ .||.|.+|+|++++.+++++|||||+|.+.++|.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~ 182 (216)
T 2qfj_A 104 RPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFE-AFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQD 182 (216)
T ss_dssp CCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHT-TSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred cCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHh-ccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHH
Confidence 6653321110 1234668999999999999999999996 99999999999999899999999999999999999
Q ss_pred HHHHhCCeeecCccEEEEecCCCCCC
Q 019392 267 AMTEMNGVYCSSRPMRIDVATPKKAS 292 (341)
Q Consensus 267 Al~~l~~~~i~g~~i~v~~a~~k~~~ 292 (341)
|++.|||..|+|+.|+|.|+.++...
T Consensus 183 A~~~l~g~~~~g~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 183 AVSSMNLFDLGGQYLRVGKAVTPPMP 208 (216)
T ss_dssp HHHHHTTCBCSSSBCEEEECSSCSST
T ss_pred HHHHccCCEeCCcEEEEEEecCCCCC
Confidence 99999999999999999999988654
No 5
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=2.7e-36 Score=246.52 Aligned_cols=165 Identities=25% Similarity=0.497 Sum_probs=153.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCccccc
Q 019392 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (341)
Q Consensus 114 ~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~ 193 (341)
+.++|||+|||+++|+++|+++|+.||.|.+|++++++.+|+++|||||+|.+.++|.+|++.+++..+ .++.+++.|
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~--~g~~l~v~~ 79 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITV--RNKRLKVSY 79 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEe--CCcEEEEEe
Confidence 468999999999999999999999999999999999998999999999999999999999999999999 677888888
Q ss_pred ccccCCCCccccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCC
Q 019392 194 ATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273 (341)
Q Consensus 194 ~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~ 273 (341)
+..... ....++|||+|||.++++++|+++|+ .||.|.++++++++.+++++|||||+|.+.++|.+|++.|||
T Consensus 80 ~~~~~~-----~~~~~~l~v~nl~~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 153 (168)
T 1b7f_A 80 ARPGGE-----SIKDTNLYVTNLPRTITDDQLDTIFG-KYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNN 153 (168)
T ss_dssp CCCCSS-----TTTTCEEEEESCCTTCCHHHHHHHHT-SSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred cCCCcc-----cCCCCCEEEeCCCCCCCHHHHHHhhh-cCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcC
Confidence 765432 34567999999999999999999996 999999999999988999999999999999999999999999
Q ss_pred eeecC--ccEEEEec
Q 019392 274 VYCSS--RPMRIDVA 286 (341)
Q Consensus 274 ~~i~g--~~i~v~~a 286 (341)
..+.| ++|+|+||
T Consensus 154 ~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 154 VIPEGGSQPLSVRLA 168 (168)
T ss_dssp CCCTTCSSCCEEEEC
T ss_pred CEecCCCeEEEEEeC
Confidence 99987 99999986
No 6
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=5.4e-36 Score=244.31 Aligned_cols=164 Identities=27% Similarity=0.501 Sum_probs=151.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcccccc
Q 019392 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194 (341)
Q Consensus 115 ~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~~ 194 (341)
.++|||+|||+++|+++|+++|+.||.|.+|++++++.+|+++|||||+|.+.++|.+|++.|++..+ .++.+++.++
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~--~g~~l~v~~~ 79 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL--QTKTIKVSYA 79 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEEC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCcc--CCceEEEEec
Confidence 58999999999999999999999999999999999998999999999999999999999999999999 6778888887
Q ss_pred cccCCCCccccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCe
Q 019392 195 TFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGV 274 (341)
Q Consensus 195 ~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~ 274 (341)
.... .....++|||+|||.++++++|+++|+ .||.|.+++++.+..+|.++|||||+|.+.++|.+|++.|||.
T Consensus 80 ~~~~-----~~~~~~~l~v~nl~~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 153 (167)
T 1fxl_A 80 RPSS-----ASIRDANLYVSGLPKTMTQKELEQLFS-QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 153 (167)
T ss_dssp CCCC-----GGGTTCEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCc-----ccCCCCcEEECCCCCcCCHHHHHHHHH-hcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCC
Confidence 6432 234567899999999999999999996 9999999999999889999999999999999999999999999
Q ss_pred eecCcc--EEEEec
Q 019392 275 YCSSRP--MRIDVA 286 (341)
Q Consensus 275 ~i~g~~--i~v~~a 286 (341)
.++|+. |+|+||
T Consensus 154 ~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 154 KPSGATEPITVKFA 167 (167)
T ss_dssp CCTTCSSCCEEEEC
T ss_pred ccCCCccceEEEeC
Confidence 999975 888875
No 7
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=1.8e-36 Score=247.35 Aligned_cols=165 Identities=26% Similarity=0.507 Sum_probs=148.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCccccc
Q 019392 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (341)
Q Consensus 114 ~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~ 193 (341)
+.++|||+|||+++|+++|+++|+.||.|.+|++++++.+|+++|||||+|.+.++|.+|++. +..+ .++.+.+.+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~--~g~~i~v~~ 77 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHIL--DGKVIDPKR 77 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEE--TTEECCCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--cccc--CCeEccccc
Confidence 578999999999999999999999999999999999998999999999999999999999984 4555 456666666
Q ss_pred ccccCCCCccccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCC
Q 019392 194 ATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273 (341)
Q Consensus 194 ~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~ 273 (341)
+... ......++|||+|||+++++++|+++|+ .||.|.+|+|+.++.+|.++|||||+|.+.++|.+|++ +++
T Consensus 78 ~~~~-----~~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~ 150 (167)
T 2cjk_A 78 AIPR-----DEQDKTGKIFVGGIGPDVRPKEFEEFFS-QWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKF 150 (167)
T ss_dssp CCCH-----HHHHHCEEEEEEEECTTCCHHHHHHHHH-TTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSE
T ss_pred ccch-----hhccCCCeEEECCCCCCCCHHHHHHHHH-hCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCC
Confidence 5432 2233466899999999999999999997 99999999999998899999999999999999999996 899
Q ss_pred eeecCccEEEEecCCC
Q 019392 274 VYCSSRPMRIDVATPK 289 (341)
Q Consensus 274 ~~i~g~~i~v~~a~~k 289 (341)
..++|+.|+|.|+.++
T Consensus 151 ~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 151 IDFKDRKIEIKRAEPR 166 (167)
T ss_dssp ECSSSSCEEEEECCCC
T ss_pred EEeCCeEEEEeecCCC
Confidence 9999999999999886
No 8
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=2.3e-35 Score=261.60 Aligned_cols=178 Identities=18% Similarity=0.316 Sum_probs=159.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcccc
Q 019392 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (341)
Q Consensus 113 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (341)
...++|||+|||+++|+++|+++|+.|| |.+|++ ++++|||||+|.+.++|.+|++.|++..+ .++.+++.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~--~g~~i~v~ 90 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRL--RERELSVQ 90 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCee--CCeEEEEE
Confidence 4678999999999999999999999999 999988 34569999999999999999999999999 66778887
Q ss_pred cccccCCCCccccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhC
Q 019392 193 WATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 272 (341)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~ 272 (341)
|.. ..++|||+|||+++++++|+++|+ .||.|.++++++++.+|.++|||||+|.+.++|.+|++.|+
T Consensus 91 ~~~-----------~~~~l~v~nlp~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 158 (284)
T 3smz_A 91 LQP-----------TDALLCVANLPPSLTQQQFEELVR-PFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLL 158 (284)
T ss_dssp ECC-----------CSCEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred ecC-----------CCCEEEEcCCCCcCCHHHHHHHHH-hcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 743 446999999999999999999997 99999999999999899999999999999999999999999
Q ss_pred CeeecCccEEEEecCCCCCCCccccccchhhhcCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCC-C
Q 019392 273 GVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDV-R 340 (341)
Q Consensus 273 ~~~i~g~~i~v~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~-t 340 (341)
|..++|+.|+|.|+.++.... .....++|||+|||+++ |
T Consensus 159 ~~~~~g~~i~v~~a~~~~~~~-----------------------------~~~~~~~l~v~nlp~~~~~ 198 (284)
T 3smz_A 159 GKPLGPRTLYVHWTDAGQLTP-----------------------------ALLHSRCLCVDRLPPGFND 198 (284)
T ss_dssp TCEETTEECEEEECCGGGCCT-----------------------------TTTSCSEEEEECCCTTCCC
T ss_pred CCEeCCcEEEEEECCCCCCCc-----------------------------ccCCccEEEEecCCcccCC
Confidence 999999999999998754321 12457899999999996 5
No 9
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=3.2e-35 Score=241.62 Aligned_cols=168 Identities=23% Similarity=0.436 Sum_probs=149.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCC--CccceEEEEecCHHHHHHHHHHhCCCCC-CCCCCCcc
Q 019392 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTG--QSEGYGFVEFYSRAAAEKVLQSYSGSLM-PNTDQPFR 190 (341)
Q Consensus 114 ~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g--~~~g~afV~f~~~~~A~~Al~~l~~~~~-~~~~~~~~ 190 (341)
+.++|||+|||+++|+++|+++|+.||+|.+|++++++.++ +++|||||+|.+.++|.+|++.|++..+ .+..+.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 57899999999999999999999999999999999998776 8999999999999999999999999765 34567777
Q ss_pred cccccccCCCCccccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHH
Q 019392 191 LNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270 (341)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~ 270 (341)
+.++..... .....++|||+|||+++++++|+++|+ .||.|.+|+++++. +|+++|||||+|.+.++|.+|++.
T Consensus 82 ~~~~~~~~~----~~~~~~~l~v~nl~~~~t~~~l~~~F~-~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~ 155 (175)
T 3nmr_A 82 MKPADSEKN----NAVEDRKLFIGMISKKCTENDIRVMFS-SFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKA 155 (175)
T ss_dssp EEECGGGCC----SCGGGSEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHH
T ss_pred Ecccccccc----ccCCCCeEEEcCCCCcCCHHHHHHHHH-hCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHH
Confidence 777654432 233567999999999999999999996 99999999999995 599999999999999999999999
Q ss_pred hCCeeec---CccEEEEecC
Q 019392 271 MNGVYCS---SRPMRIDVAT 287 (341)
Q Consensus 271 l~~~~i~---g~~i~v~~a~ 287 (341)
|||..+. +++|+|+||.
T Consensus 156 l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 156 MHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HTTSCCCTTCSSCCEEEECC
T ss_pred hcCCcccCCCCCCeEEEecC
Confidence 9998776 4999999974
No 10
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=7.7e-35 Score=259.22 Aligned_cols=188 Identities=11% Similarity=0.236 Sum_probs=152.7
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCC
Q 019392 109 NFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188 (341)
Q Consensus 109 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~ 188 (341)
.......++|||+|||+++|+++|+++|+.||.|.+|+++.+... ++|||||+|.+.++|.+|++ +++..+ .++.
T Consensus 35 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~-~~~~~~--~g~~ 109 (292)
T 2ghp_A 35 LTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAIT-KTHKVV--GQNE 109 (292)
T ss_dssp -------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHT-TTTCEE--TTEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHH-hCCcEe--CCcE
Confidence 345678899999999999999999999999999999999998733 57999999999999999995 999999 6677
Q ss_pred cccccccccCCCCccccCCCceEEeCCCCCCCCHHHHHHHhcccCC-CeeEEEEEecCCCCCCccEEEEEeCCHHHHHHH
Q 019392 189 FRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYP-SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRA 267 (341)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G-~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A 267 (341)
+.+.++ ..++|||+|||+++++++|+++|+ .|| .|.+|+|+.++. +.++|||||+|.+.++|.+|
T Consensus 110 i~v~~~------------~~~~l~v~nlp~~~t~~~l~~~f~-~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A 175 (292)
T 2ghp_A 110 IIVSHL------------TECTLWMTNFPPSYTQRNIRDLLQ-DINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYC 175 (292)
T ss_dssp CEEEEC------------CSCEEEEECCCTTCCHHHHHHHHH-HTTCCCCEEECC--------CCEEEEECSSHHHHHHH
T ss_pred EEEEEC------------CCCEEEEECCCCCCCHHHHHHHHH-HhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHH
Confidence 777765 366999999999999999999997 999 999999999865 88999999999999999999
Q ss_pred HHHhCCeeecCccEEEEecCCCCCCCccccccchhhhcCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCC-CC
Q 019392 268 MTEMNGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSD-VR 340 (341)
Q Consensus 268 l~~l~~~~i~g~~i~v~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~-~t 340 (341)
++.|||..|+|+.|.|.|+.++...... .......++|||+|||.+ +|
T Consensus 176 ~~~l~g~~~~g~~l~v~~a~~~~~~~~~-------------------------~~~~~~~~~l~v~nlp~~~~t 224 (292)
T 2ghp_A 176 VEKLNGLKIEGYTLVTKVSNPLEKSKRT-------------------------DSATLEGREIMIRNLSTELLD 224 (292)
T ss_dssp HHHHTTCEETTEECEEEECCCC----------------------------------CCTTTEEEEEEECTTTCC
T ss_pred HHHhCCCEeCCcEEEEEECCCCcccccc-------------------------cccCCCCceEEEECCCcccCC
Confidence 9999999999999999999887644211 122346789999999999 76
No 11
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=6.8e-34 Score=233.17 Aligned_cols=160 Identities=20% Similarity=0.442 Sum_probs=143.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhc----C-------CcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCC
Q 019392 113 DETKTIWIGDLFHWMDETFLHNCFSHT----G-------QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSL 181 (341)
Q Consensus 113 ~~~~~l~v~nLp~~~te~~l~~~f~~~----G-------~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~ 181 (341)
++.++|||+|||+++|+++|+++|+.| | .|.++++.++ +|||||+|.+.++|.+|+ .+++..
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~------~g~afV~f~~~~~A~~A~-~~~~~~ 74 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 74 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT------TTEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC------CCEEEEEeCCHHHHHHHH-HhCCcE
Confidence 467899999999999999999999999 6 7777777554 599999999999999999 899999
Q ss_pred CCCCCCCcccccccccCCCCccccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCH
Q 019392 182 MPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDE 261 (341)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~ 261 (341)
+ .++.+++.++.... .....++|||+|||+++++++|+++|+ .||.|.+|++.+++.+|+++|||||+|.+.
T Consensus 75 ~--~g~~i~v~~~~~~~-----~~~~~~~l~v~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~g~~~g~afV~f~~~ 146 (172)
T 2g4b_A 75 F--QGQSLKIRRPHDYQ-----PLPGAHKLFIGGLPNYLNDDQVKELLT-SFGPLKAFNLVKDSATGLSKGYAFCEYVDI 146 (172)
T ss_dssp E--TTEECEEECCSSCC-----CCTTTTCEEEECCCTTCCHHHHHHHHH-TTSCEEEEEEEECTTTCSEEEEEEEEESST
T ss_pred e--cCceeeecCCcccC-----CCCCCCEEEEEcCCCcCCHHHHHHHHH-hcCCceEEEEEecCCCCCcceEEEEEeCCH
Confidence 9 67778887765332 223467999999999999999999997 999999999999988999999999999999
Q ss_pred HHHHHHHHHhCCeeecCccEEEEecC
Q 019392 262 NERSRAMTEMNGVYCSSRPMRIDVAT 287 (341)
Q Consensus 262 ~~A~~Al~~l~~~~i~g~~i~v~~a~ 287 (341)
++|.+|++.|||..++|+.|+|+||.
T Consensus 147 ~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 147 NVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp THHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 99999999999999999999999974
No 12
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=1.4e-33 Score=236.64 Aligned_cols=169 Identities=20% Similarity=0.399 Sum_probs=145.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhc----C-------CcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCC
Q 019392 113 DETKTIWIGDLFHWMDETFLHNCFSHT----G-------QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSL 181 (341)
Q Consensus 113 ~~~~~l~v~nLp~~~te~~l~~~f~~~----G-------~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~ 181 (341)
...++|||+|||+++|+++|+++|+.| | .|.++++. +++|||||+|.+.++|.+|+ .|++..
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~------~~~g~afV~F~~~~~A~~Al-~l~g~~ 74 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGII 74 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE------TTTTEEEEEESCSHHHHHHG-GGTTEE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec------CCCCEEEEEeCCHHHHHHHH-HhcCCE
Confidence 357899999999999999999999999 5 56666554 44699999999999999999 899999
Q ss_pred CCCCCCCcccccccccCCCC---------------ccccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCC
Q 019392 182 MPNTDQPFRLNWATFSGSDR---------------RTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSN 246 (341)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~ 246 (341)
+ .++.+++.++....... .......++|||+|||+++++++|+++|+ .||.|.+|++.+++.
T Consensus 75 ~--~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~-~~G~v~~~~~~~~~~ 151 (198)
T 2yh0_A 75 F--QGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLT-SFGPLKAFNLVKDSA 151 (198)
T ss_dssp E--TTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHH-TBSCEEEEEEEECTT
T ss_pred E--cCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHH-HcCCccEEEEeecCC
Confidence 9 67778887765432111 11224668999999999999999999996 999999999999988
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEecCCCCC
Q 019392 247 TGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKA 291 (341)
Q Consensus 247 ~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a~~k~~ 291 (341)
++.++|||||+|.+.++|.+|++.|||..|+|+.|+|+|+.++..
T Consensus 152 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 152 TGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp TCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 999999999999999999999999999999999999999988754
No 13
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=4.8e-33 Score=246.62 Aligned_cols=173 Identities=16% Similarity=0.303 Sum_probs=158.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCccccc
Q 019392 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (341)
Q Consensus 114 ~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~ 193 (341)
..++|||+|||+++|+++|+++|+.||.|.+++++.++.+|.++|||||+|.+.++|.+|++.|++..+ .++.+++.|
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~--~g~~i~v~~ 171 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPL--GPRTLYVHW 171 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEE
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEe--CCcEEEEEE
Confidence 457999999999999999999999999999999999998999999999999999999999999999999 678888888
Q ss_pred ccccCCCCccccCCCceEEeCCCCCCC-CHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhC
Q 019392 194 ATFSGSDRRTEACSDLSIFVGDLAPDV-TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 272 (341)
Q Consensus 194 ~~~~~~~~~~~~~~~~~l~v~nlp~~~-t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~ 272 (341)
+...... ......++|||+|||+++ ++++|+++|+ .||.|.+|+|+.+. +|+++|||||+|.+.++|.+|++.||
T Consensus 172 a~~~~~~--~~~~~~~~l~v~nlp~~~~~~~~l~~~f~-~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~ 247 (284)
T 3smz_A 172 TDAGQLT--PALLHSRCLCVDRLPPGFNDVDALCRALS-AVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQAD 247 (284)
T ss_dssp CCGGGCC--TTTTSCSEEEEECCCTTCCCHHHHHHHTC-SSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHT
T ss_pred CCCCCCC--cccCCccEEEEecCCcccCCHHHHHHHhh-CCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhC
Confidence 8765432 233467899999999995 9999999996 99999999999985 79999999999999999999999999
Q ss_pred CeeecCccEEEEecCCCCCC
Q 019392 273 GVYCSSRPMRIDVATPKKAS 292 (341)
Q Consensus 273 ~~~i~g~~i~v~~a~~k~~~ 292 (341)
|..|+|+.|+|.|+.++...
T Consensus 248 g~~~~g~~l~v~~a~~~~~~ 267 (284)
T 3smz_A 248 GLSLGGSHLRVSFCAPGPPG 267 (284)
T ss_dssp TCEETTEECEEEECCSSSCH
T ss_pred CCccCCeEEEEEEecCCCcc
Confidence 99999999999999988764
No 14
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=100.00 E-value=2.9e-34 Score=236.10 Aligned_cols=166 Identities=19% Similarity=0.308 Sum_probs=145.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcc
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (341)
.....++|||+|||+++|+++|+++|..||.+.. .++.+..+|.++|||||+|.+.++|.+|+ .|++..+ .++.++
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~--~g~~l~ 84 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKV--FGNEIK 84 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEE--TTEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEe--CCeEEE
Confidence 4578899999999999999999999999997766 33444457889999999999999999999 5999999 678888
Q ss_pred cccccccCCCCccccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHH
Q 019392 191 LNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270 (341)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~ 270 (341)
+.++...... .....++|||+|||+++++++|+++|+ .||.|..+ ..++.++|||||+|.+.++|.+|++.
T Consensus 85 v~~~~~~~~~---~~~~~~~l~v~nlp~~~t~~~l~~~F~-~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~ 155 (175)
T 1fje_B 85 LEKPKGRDSK---KVRAARTLLAKNLSFNITEDELKEVFE-DALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEE 155 (175)
T ss_dssp EECCCCSSCS---TTGGGGEEEEESCCSSCCHHHHHHHCT-TCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHH
T ss_pred EecCCCcccc---ccccCCEEEEeCCCCCCCHHHHHHHHH-hcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHH
Confidence 8888654332 234567999999999999999999997 99987765 46789999999999999999999999
Q ss_pred hCCeeecCccEEEEecCCC
Q 019392 271 MNGVYCSSRPMRIDVATPK 289 (341)
Q Consensus 271 l~~~~i~g~~i~v~~a~~k 289 (341)
|||..|+|+.|+|+|+.+|
T Consensus 156 l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 156 KQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HTEEEETTEEEEEEECSSC
T ss_pred hCCCEECCeEEEEEecCCC
Confidence 9999999999999999876
No 15
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=100.00 E-value=7.9e-33 Score=245.00 Aligned_cols=167 Identities=23% Similarity=0.407 Sum_probs=145.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHH----HHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCC
Q 019392 111 TNDETKTIWIGDLFHWMDETFLH----NCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~----~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~ 186 (341)
.....++|||+|||+++|+++|+ ++|+.||.|.+|++.+ +++++|||||+|.+.++|.+|++.|+|..| .+
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g 79 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPF--YD 79 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCee--CC
Confidence 44678999999999999999977 8999999999999886 678999999999999999999999999999 56
Q ss_pred CCcccccccccCCC------------------------------------------------------------------
Q 019392 187 QPFRLNWATFSGSD------------------------------------------------------------------ 200 (341)
Q Consensus 187 ~~~~~~~~~~~~~~------------------------------------------------------------------ 200 (341)
+.++|.|+......
T Consensus 80 ~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 159 (282)
T 3pgw_A 80 KPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPG 159 (282)
T ss_pred cEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCC
Confidence 78888777543310
Q ss_pred ----------------------------------------CccccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEE
Q 019392 201 ----------------------------------------RRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAK 240 (341)
Q Consensus 201 ----------------------------------------~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~ 240 (341)
........++|||+|||.++++++|+++|+ .||.|.+|+
T Consensus 160 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~-~~G~i~~v~ 238 (282)
T 3pgw_A 160 QPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFN-QFPGFKEVR 238 (282)
T ss_pred CCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHH-hcCCeEEEE
Confidence 001223457899999999999999999996 999999999
Q ss_pred EEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeec-CccEEEEecCC
Q 019392 241 VIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS-SRPMRIDVATP 288 (341)
Q Consensus 241 i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~-g~~i~v~~a~~ 288 (341)
|+.++ +|||||+|.+.++|.+|++.|||..|+ |+.|+|+|++.
T Consensus 239 ~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~akk 282 (282)
T 3pgw_A 239 LVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282 (282)
T ss_pred EecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEecC
Confidence 99653 589999999999999999999999999 99999999863
No 16
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=100.00 E-value=2.9e-33 Score=235.28 Aligned_cols=163 Identities=15% Similarity=0.195 Sum_probs=139.0
Q ss_pred CCCeEEEcCCC-CCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcccc
Q 019392 114 ETKTIWIGDLF-HWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (341)
Q Consensus 114 ~~~~l~v~nLp-~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (341)
+.++|||+||+ +.+|+++|+++|+.||.|.+|++++++ +|||||+|.+.++|.+|++.|||..+ .++.++|.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~--~g~~l~v~ 75 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFM--FGQKMNVC 75 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEE--CCceEEEE
Confidence 57899999999 899999999999999999999998763 59999999999999999999999999 66778888
Q ss_pred cccccCCCC----------------------c----------cccCCCceEEeCCCCCCCCHHHHHHHhcccCCCe--eE
Q 019392 193 WATFSGSDR----------------------R----------TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV--KG 238 (341)
Q Consensus 193 ~~~~~~~~~----------------------~----------~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v--~~ 238 (341)
++....... + ....+.++|||+|||+++|+++|+++|+ .||.| .+
T Consensus 76 ~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~-~~G~v~~~~ 154 (205)
T 3tyt_A 76 VSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICD-ELGVKRPTS 154 (205)
T ss_dssp ECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHH-HHTCCCCSE
T ss_pred EccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHH-hcCCcceEE
Confidence 775322100 0 0013456899999999999999999996 99999 89
Q ss_pred EEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCc----cEEEEec
Q 019392 239 AKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR----PMRIDVA 286 (341)
Q Consensus 239 v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~----~i~v~~a 286 (341)
|+++.++ +..+|||||+|.+.++|.+||..|||..|.|+ ++.|+|+
T Consensus 155 v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 155 VKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp EEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 9998774 55679999999999999999999999999887 5777664
No 17
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=4.6e-33 Score=247.72 Aligned_cols=171 Identities=13% Similarity=0.299 Sum_probs=146.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcC-CcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcccc
Q 019392 114 ETKTIWIGDLFHWMDETFLHNCFSHTG-QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (341)
Q Consensus 114 ~~~~l~v~nLp~~~te~~l~~~f~~~G-~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (341)
..++|||+|||+++++++|+++|+.|| .|.+|+++.++. |.++|||||+|.+.++|.+|++.|++..+ .++.+.+.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~ 192 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKI--EGYTLVTK 192 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEe--CCcEEEEE
Confidence 578999999999999999999999999 999999999874 88999999999999999999999999999 66888888
Q ss_pred cccccCCCCcc--ccCCCceEEeCCCCCC-CCHHHHHHHhcccCCCeeEEEEEecCC-CCCCccEEEEEeCCHHHHHHHH
Q 019392 193 WATFSGSDRRT--EACSDLSIFVGDLAPD-VTDSILQETFSSKYPSVKGAKVIIDSN-TGRTKGYGFVRFGDENERSRAM 268 (341)
Q Consensus 193 ~~~~~~~~~~~--~~~~~~~l~v~nlp~~-~t~~~l~~~F~e~~G~v~~v~i~~~~~-~~~~~g~afV~F~~~~~A~~Al 268 (341)
|+.......+. .....++|||+|||++ +++++|+++|+ .||.|.+|+|+++.. ||.++|||||+|.+.++|.+|+
T Consensus 193 ~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~-~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~ 271 (292)
T 2ghp_A 193 VSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFE-GFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL 271 (292)
T ss_dssp ECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHG-GGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG
T ss_pred ECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHh-ccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH
Confidence 87755433322 3456789999999999 99999999997 999999999999865 5999999999999999999999
Q ss_pred HHhCCeeecCccEEEEecCCC
Q 019392 269 TEMNGVYCSSRPMRIDVATPK 289 (341)
Q Consensus 269 ~~l~~~~i~g~~i~v~~a~~k 289 (341)
.|||..|+|+.|+|.|+.+|
T Consensus 272 -~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 272 -QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp -GGTTEEETTEEEEEEECCCC
T ss_pred -HhcCCEECCcEEEEEEecCC
Confidence 99999999999999999986
No 18
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=100.00 E-value=3.3e-32 Score=233.59 Aligned_cols=165 Identities=16% Similarity=0.290 Sum_probs=143.6
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcc
Q 019392 112 NDETKTIWIGDLFH-WMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (341)
Q Consensus 112 ~~~~~~l~v~nLp~-~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (341)
..+.++|||+|||+ ++++++|+++|+.||.|.+|+++.++ +|||||+|.+.++|.+|++.|++..+ .++.++
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~--~g~~l~ 103 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKL--HGKPIR 103 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBC--SSSBCE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeE--CCeEEE
Confidence 35788999999999 99999999999999999999999875 58999999999999999999999999 667888
Q ss_pred cccccccCCCCc------------------------------cccCCCceEEeCCCCCCCCHHHHHHHhcccCC-CeeEE
Q 019392 191 LNWATFSGSDRR------------------------------TEACSDLSIFVGDLAPDVTDSILQETFSSKYP-SVKGA 239 (341)
Q Consensus 191 ~~~~~~~~~~~~------------------------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G-~v~~v 239 (341)
+.|+........ ....+.++|||+|||+++++++|+++|+ .|| .|.+|
T Consensus 104 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~-~~G~~i~~v 182 (229)
T 2adc_A 104 ITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFS-SNGGVVKGF 182 (229)
T ss_dssp EECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHH-TTSCCEEEE
T ss_pred EEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHH-HcCCCeeEE
Confidence 877764311000 0123468899999999999999999996 999 99999
Q ss_pred EEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeec-CccEEEEecCCC
Q 019392 240 KVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS-SRPMRIDVATPK 289 (341)
Q Consensus 240 ~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~-g~~i~v~~a~~k 289 (341)
+|+.+ .+|||||+|.+.++|.+|++.|||..++ |+.|+|+|++++
T Consensus 183 ~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 183 KFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp EECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 98753 3689999999999999999999999999 999999999874
No 19
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=100.00 E-value=3.5e-32 Score=228.26 Aligned_cols=163 Identities=17% Similarity=0.294 Sum_probs=141.9
Q ss_pred CCCeEEEcCCCC-CCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcccc
Q 019392 114 ETKTIWIGDLFH-WMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (341)
Q Consensus 114 ~~~~l~v~nLp~-~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (341)
..++|||+|||+ ++++++|+++|+.||.|.+|+++.++ +|||||+|.+.++|.+|++.|++..+ .++.+++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~--~g~~l~v~ 74 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKL--HGKPIRIT 74 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCC--SSCCCEEE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCee--cCeEEEEE
Confidence 357999999999 99999999999999999999999875 58999999999999999999999999 56778887
Q ss_pred cccccCCCCc------------------------------cccCCCceEEeCCCCCCCCHHHHHHHhcccCC-CeeEEEE
Q 019392 193 WATFSGSDRR------------------------------TEACSDLSIFVGDLAPDVTDSILQETFSSKYP-SVKGAKV 241 (341)
Q Consensus 193 ~~~~~~~~~~------------------------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G-~v~~v~i 241 (341)
|+........ ....+.++|||+|||.++++++|+++|+ .|| .|.+|+|
T Consensus 75 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~-~~G~~v~~v~i 153 (198)
T 1qm9_A 75 LSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFS-SNGGVVKGFKF 153 (198)
T ss_dssp ECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHH-HTTSCCCEEEE
T ss_pred EecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHH-HcCCCceEEEE
Confidence 7754311100 1123478899999999999999999996 999 9999998
Q ss_pred EecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeec-CccEEEEecCCC
Q 019392 242 IIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS-SRPMRIDVATPK 289 (341)
Q Consensus 242 ~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~-g~~i~v~~a~~k 289 (341)
+.+ .+|||||+|.+.++|.+|++.|||..++ |+.|+|.|++++
T Consensus 154 ~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 154 FQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp SST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred EeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 754 3689999999999999999999999999 999999999874
No 20
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=100.00 E-value=8.9e-32 Score=235.38 Aligned_cols=160 Identities=26% Similarity=0.521 Sum_probs=144.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcc
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (341)
.....++|||+|||+++|+++|+++|+.||.|.+|++.++ +|||||+|.+.++|.+|+..+++..+ .++.++
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i--~g~~l~ 89 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTIL--KSRPLR 89 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEE--CCceeE
Confidence 4467789999999999999999999999999999999764 49999999999999999999999999 678888
Q ss_pred cccccccCCCCccccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHH
Q 019392 191 LNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270 (341)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~ 270 (341)
+.|+. +.++|||+|||+++|+++|+++|+ .||.|.+|+|+.| .+|+++|||||+|.+.++|.+|++.
T Consensus 90 v~~a~-----------~~~~l~v~nl~~~~t~~~l~~~F~-~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~ 156 (261)
T 3sde_A 90 IRFAT-----------HGAALTVKNLSPVVSNELLEQAFS-QFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALER 156 (261)
T ss_dssp EEECC-----------CSSEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred eeecc-----------cCCcccccCCCCCCCHHHHHHHHH-hcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHH
Confidence 88875 356899999999999999999997 9999999999999 6899999999999999999999999
Q ss_pred hC-Ceeec---CccEEEEecCCCCC
Q 019392 271 MN-GVYCS---SRPMRIDVATPKKA 291 (341)
Q Consensus 271 l~-~~~i~---g~~i~v~~a~~k~~ 291 (341)
|| +..+. ++.|.|.++.+...
T Consensus 157 l~~~~~~~~~~~r~i~v~~~~~~~~ 181 (261)
T 3sde_A 157 CGDGAFLLTTTPRPVIVEPMEQFDD 181 (261)
T ss_dssp HHHSCEESSSSCCBCEEEECCCEES
T ss_pred hcCCeEEecCCCceEEEeeccccCc
Confidence 95 55554 99999999987643
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.94 E-value=4.8e-26 Score=183.80 Aligned_cols=146 Identities=24% Similarity=0.329 Sum_probs=115.2
Q ss_pred EEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCC-----CCCccccccc-ccCCCCccccCCCceEEeCCCC
Q 019392 144 NVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNT-----DQPFRLNWAT-FSGSDRRTEACSDLSIFVGDLA 217 (341)
Q Consensus 144 ~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~l~v~nlp 217 (341)
.++|+.+.. +++|||||+|.+.++|++|++.+++...... .......... .............++|||+|||
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 467777753 6899999999999999999988775322111 1111111111 1111122233456899999999
Q ss_pred CCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEecCCCCCC
Q 019392 218 PDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292 (341)
Q Consensus 218 ~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a~~k~~~ 292 (341)
+++++++|+++|+ .||.|.+|+|++|+.+|+++|||||+|.+.++|.+||+.|||..|+|+.|+|.|++++...
T Consensus 80 ~~~~~~~l~~~F~-~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 80 YRTSPDTLRRVFE-KYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 153 (158)
T ss_dssp TTCCHHHHHHHHH-HHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCC
T ss_pred CCCCHHHHHHHHH-hcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 9999999999996 9999999999999889999999999999999999999999999999999999999987654
No 22
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.92 E-value=2.1e-25 Score=169.88 Aligned_cols=107 Identities=22% Similarity=0.437 Sum_probs=75.7
Q ss_pred CceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEecC
Q 019392 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVAT 287 (341)
Q Consensus 208 ~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a~ 287 (341)
..+|||+|||+++++++|+++|+ .||.|.+|+|++|+ +.+||||||+|++.++|.+||+.|||..|+|+.|+|.++.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~-~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFS-AFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCEEEECCCCCCCCHHHHHHHHh-ccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 46899999999999999999997 99999999999985 4589999999999999999999999999999999999998
Q ss_pred CCCCCCccccccchhhhcCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCC
Q 019392 288 PKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVRC 341 (341)
Q Consensus 288 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~ 341 (341)
++....... .......++|||+|||+++|.
T Consensus 82 ~~~~~~~~~------------------------~~~~~~~~~lyv~Nl~~~~T~ 111 (115)
T 4f25_A 82 SRKEREAEL------------------------GARAKEFTNVYIKNFGPGSTR 111 (115)
T ss_dssp CCCC--------------------------------------------------
T ss_pred Ccccccccc------------------------ccccCCCCceEeCCCCCCccc
Confidence 876443111 112234568999999999984
No 23
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.90 E-value=7.8e-24 Score=169.21 Aligned_cols=128 Identities=23% Similarity=0.350 Sum_probs=110.6
Q ss_pred CCccceEEEEecCHHHHHHHHHHh-CCCCCCCCCCCcccccccccC-----------CCCccccCCCceEEeCCCCCCCC
Q 019392 154 GQSEGYGFVEFYSRAAAEKVLQSY-SGSLMPNTDQPFRLNWATFSG-----------SDRRTEACSDLSIFVGDLAPDVT 221 (341)
Q Consensus 154 g~~~g~afV~f~~~~~A~~Al~~l-~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~l~v~nlp~~~t 221 (341)
...+|+++|+|.+.++|++|++.+ ++..+++ .+++.++.... ..........++|||+|||++++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t 86 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG---EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGN 86 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC---EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCS
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC---ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCC
Confidence 457799999999999999999999 9999955 77777665321 12223345678999999999999
Q ss_pred HHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEecCCCC
Q 019392 222 DSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 290 (341)
Q Consensus 222 ~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a~~k~ 290 (341)
+++|+++|+ .||.|.+|+|+++ ++|||||+|.+.++|.+|++.|||..|+|+.|+|+|+.+++
T Consensus 87 ~~~l~~~F~-~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 87 KTELERAFG-YYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp CHHHHHHHH-HHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHHHHH-hhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 999999997 9999999999876 58999999999999999999999999999999999998864
No 24
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.89 E-value=3.3e-23 Score=153.07 Aligned_cols=81 Identities=30% Similarity=0.536 Sum_probs=78.0
Q ss_pred CCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEec
Q 019392 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (341)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a 286 (341)
..++|||+|||+++|+++|+++|+ .||.|.+|+|++|+.+|+++|||||+|.+.++|.+|++.|||..|+|+.|+|+||
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFS-SIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHH-TTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 456899999999999999999997 9999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 019392 287 TP 288 (341)
Q Consensus 287 ~~ 288 (341)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 76
No 25
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.88 E-value=1.3e-22 Score=154.44 Aligned_cols=107 Identities=24% Similarity=0.427 Sum_probs=73.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCccccc
Q 019392 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (341)
Q Consensus 114 ~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~ 193 (341)
...+|||+|||+++|+++|+++|+.||.|.+|+|+.++ +.++|||||+|.+.++|.+||+.|++..| .++.++|.+
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~--~g~~i~V~~ 79 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLL--NDRKVFVGR 79 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEE--TTEECEEEE
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEE--CCEEEEEEE
Confidence 45689999999999999999999999999999999986 45889999999999999999999999999 677888888
Q ss_pred ccccCCCCc---cccCCCceEEeCCCCCCCCHHH
Q 019392 194 ATFSGSDRR---TEACSDLSIFVGDLAPDVTDSI 224 (341)
Q Consensus 194 ~~~~~~~~~---~~~~~~~~l~v~nlp~~~t~~~ 224 (341)
+........ .......+|||+|||+++|++.
T Consensus 80 a~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 80 FKSRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp SSCCCC----------------------------
T ss_pred CCCccccccccccccCCCCceEeCCCCCCccccc
Confidence 765432221 2223446799999999999874
No 26
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.88 E-value=7.9e-23 Score=159.96 Aligned_cols=127 Identities=20% Similarity=0.296 Sum_probs=84.5
Q ss_pred ceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcccccccccCCCCccccCCCceEEeCCCCCCCCHHHHHHHhcccCCCee
Q 019392 158 GYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVK 237 (341)
Q Consensus 158 g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~ 237 (341)
-++|++|.+...+..|+..+++....+.+. ..+.. ........++|||+|||+++++++|+++|+ .||.|.
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~---~~~~~-----~~~~~~~~~~l~V~nLp~~~te~~L~~~F~-~~G~i~ 75 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGS---MSYGR-----PPPDVEGMTSLKVDNLTYRTSPDTLRRVFE-KYGRVG 75 (135)
T ss_dssp ---------------------------------CCSCC-----SCSSGGGCCCEEEECCCSSCHHHHHHHHHG-GGSCCS
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCCC---CCcCC-----CCCCCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEE
Confidence 467889999999999999998876543321 12221 123344577999999999999999999996 999999
Q ss_pred EEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEecCCCCCCC
Q 019392 238 GAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASG 293 (341)
Q Consensus 238 ~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a~~k~~~~ 293 (341)
+|+|+.++.+++++|||||+|.+.++|.+||+.||+..|+|+.|+|+|++++....
T Consensus 76 ~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~~ 131 (135)
T 2lea_A 76 DVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPD 131 (135)
T ss_dssp EEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCCT
T ss_pred EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCCc
Confidence 99999998899999999999999999999999999999999999999999876553
No 27
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.87 E-value=7.9e-22 Score=148.46 Aligned_cols=85 Identities=12% Similarity=0.210 Sum_probs=80.3
Q ss_pred CCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEe
Q 019392 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (341)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~ 285 (341)
.+.++|||+||++++++++|+++|+ .||.|.+|+|++|+.|++++|||||+|++.++|.+||+.|||..|+|+.|+|.+
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~-~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCR-KYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHT-TTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHH-hcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3567999999999999999999996 999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 019392 286 ATPKKA 291 (341)
Q Consensus 286 a~~k~~ 291 (341)
+..+..
T Consensus 83 a~~~~~ 88 (110)
T 3s8s_A 83 DIKGQQ 88 (110)
T ss_dssp CSTTHH
T ss_pred CCCCcH
Confidence 976543
No 28
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.87 E-value=1.1e-22 Score=148.03 Aligned_cols=84 Identities=13% Similarity=0.310 Sum_probs=77.8
Q ss_pred CceEEeCCCCCCCCHHHHHHHhcccCC-CeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHh-CCeeecCccEEEEe
Q 019392 208 DLSIFVGDLAPDVTDSILQETFSSKYP-SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEM-NGVYCSSRPMRIDV 285 (341)
Q Consensus 208 ~~~l~v~nlp~~~t~~~l~~~F~e~~G-~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l-~~~~i~g~~i~v~~ 285 (341)
+++|||+|||+++|+++|+++|+ .|| .|.+|+|++|+.++.+||||||+|.+.++|.+||+.+ ++..++|++|+|+|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~-~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~ 79 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQ-SHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHY 79 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHH-HHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-HhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEE
Confidence 36899999999999999999996 999 8999999999999999999999999999999999887 45789999999999
Q ss_pred cCCCCCC
Q 019392 286 ATPKKAS 292 (341)
Q Consensus 286 a~~k~~~ 292 (341)
+.++...
T Consensus 80 a~~~~~~ 86 (91)
T 2lxi_A 80 SDPKPKI 86 (91)
T ss_dssp CCSCCCC
T ss_pred cCCCCCC
Confidence 9987654
No 29
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.86 E-value=6.9e-22 Score=167.27 Aligned_cols=104 Identities=32% Similarity=0.480 Sum_probs=92.6
Q ss_pred CCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEe
Q 019392 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (341)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~ 285 (341)
.+.++|||+|||+++|+++|+++|+ .||.|.+|+|++|+.+++++|||||+|.+.++|.+||+.+|+..+.|+.|++.+
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFS-PAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHH-hhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 4567999999999999999999996 999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCccccccchhhhcCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCC
Q 019392 286 ATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVR 340 (341)
Q Consensus 286 a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t 340 (341)
+....... ....++|||+||++++|
T Consensus 92 ~~~~~~~~------------------------------~~~~~~l~v~nl~~~~t 116 (213)
T 4f02_A 92 SQRDPSLR------------------------------KSGVGNIFIKNLDKSID 116 (213)
T ss_dssp CCCCTHHH------------------------------HHCTTEEEEESCCTTCC
T ss_pred cccccccc------------------------------ccccccceECCcccccH
Confidence 87654321 11356899999999987
No 30
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.86 E-value=2.3e-21 Score=157.33 Aligned_cols=100 Identities=24% Similarity=0.504 Sum_probs=92.3
Q ss_pred CceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEecC
Q 019392 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVAT 287 (341)
Q Consensus 208 ~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a~ 287 (341)
+++|||+|||+++++++|+++|+ .||.|.+|++++++.+|+++|||||+|.+.++|.+|++.|||..+.|+.|+|.++.
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~-~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFG-SIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHH-TTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cceEEEcCCCCCCCHHHHHHHHH-hcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 57999999999999999999996 99999999999998899999999999999999999999999999999999999998
Q ss_pred CCCCCCccccccchhhhcCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCC
Q 019392 288 PKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVR 340 (341)
Q Consensus 288 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t 340 (341)
++... ...++|||+|||.++|
T Consensus 81 ~~~~~--------------------------------~~~~~l~v~nl~~~~t 101 (167)
T 1fxl_A 81 PSSAS--------------------------------IRDANLYVSGLPKTMT 101 (167)
T ss_dssp CCCGG--------------------------------GTTCEEEEESCCTTCC
T ss_pred CCccc--------------------------------CCCCcEEECCCCCcCC
Confidence 76432 1457899999999987
No 31
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.86 E-value=1.7e-21 Score=158.39 Aligned_cols=101 Identities=26% Similarity=0.478 Sum_probs=93.1
Q ss_pred CCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEec
Q 019392 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (341)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a 286 (341)
+.++|||+|||+++++++|+++|+ .||.|.+|++++++.+|+++|||||+|.+.++|.+|++.|+|..++|+.|+|.|+
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 80 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFR-AIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYA 80 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHH-TTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHH-hcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEec
Confidence 467999999999999999999996 9999999999999889999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccccchhhhcCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCC
Q 019392 287 TPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVR 340 (341)
Q Consensus 287 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t 340 (341)
.++... ...++|||+|||.++|
T Consensus 81 ~~~~~~--------------------------------~~~~~l~v~nl~~~~t 102 (168)
T 1b7f_A 81 RPGGES--------------------------------IKDTNLYVTNLPRTIT 102 (168)
T ss_dssp CCCSST--------------------------------TTTCEEEEESCCTTCC
T ss_pred CCCccc--------------------------------CCCCCEEEeCCCCCCC
Confidence 876432 2467999999999987
No 32
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.86 E-value=4.5e-22 Score=145.33 Aligned_cols=80 Identities=20% Similarity=0.408 Sum_probs=74.9
Q ss_pred CceEEeCCCCCCCCHHHHHHHhcccCCC--eeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCe----eecCccE
Q 019392 208 DLSIFVGDLAPDVTDSILQETFSSKYPS--VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGV----YCSSRPM 281 (341)
Q Consensus 208 ~~~l~v~nlp~~~t~~~l~~~F~e~~G~--v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~----~i~g~~i 281 (341)
=.+|||+|||+++|+++|+++|+ .||. |.+|+|++|+.+|++||||||+|.+.++|.+||+.|||. .|+||.|
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~-~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALS-PYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHST-TTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHH-hhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 35899999999999999999996 9995 679999999999999999999999999999999999986 5999999
Q ss_pred EEEecCC
Q 019392 282 RIDVATP 288 (341)
Q Consensus 282 ~v~~a~~ 288 (341)
+|+||+.
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999875
No 33
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.86 E-value=2.4e-21 Score=161.60 Aligned_cols=109 Identities=26% Similarity=0.430 Sum_probs=91.2
Q ss_pred ccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEE
Q 019392 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (341)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v 283 (341)
+....++|||+|||+++|+++|+++|+ .||.|.+|+|++++.+|+++|||||+|.+.++|.+||+. ++..++|+.|.|
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v 86 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFE-QWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEP 86 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeee
Confidence 345678999999999999999999996 999999999999999999999999999999999999965 999999999999
Q ss_pred EecCCCCCCCccccccchhhhcCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCC
Q 019392 284 DVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVR 340 (341)
Q Consensus 284 ~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t 340 (341)
.++.++.... ........++|||+|||.++|
T Consensus 87 ~~~~~~~~~~--------------------------~~~~~~~~~~l~V~nLp~~~t 117 (196)
T 1l3k_A 87 KRAVSREDSQ--------------------------RPGAHLTVKKIFVGGIKEDTE 117 (196)
T ss_dssp EECCC-------------------------------------CCSEEEEECCTTTCC
T ss_pred ecccCccccc--------------------------ccccCCCcceEEEeCCCCCCC
Confidence 9988765432 112234568999999999987
No 34
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.86 E-value=1.5e-21 Score=158.38 Aligned_cols=131 Identities=18% Similarity=0.268 Sum_probs=80.8
Q ss_pred EEecCHHHHHHHHHHhCCCCCCCCCCCccccccccc---------------CCCCccccCCCceEEeCCCCCCCCHHHHH
Q 019392 162 VEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFS---------------GSDRRTEACSDLSIFVGDLAPDVTDSILQ 226 (341)
Q Consensus 162 V~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~l~v~nlp~~~t~~~l~ 226 (341)
.+|++.++|+.|+..+++......++..+..+.... ...........++|||+|||+.+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 789999999999999988777545555554442211 01111223456789999999999999999
Q ss_pred HHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEecCCCCCCC
Q 019392 227 ETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASG 293 (341)
Q Consensus 227 ~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a~~k~~~~ 293 (341)
++|+ .||.|.+|.|+.++.+|.++|||||+|.+.++|.+||..|||..|.|+.|.|.|+.++....
T Consensus 91 ~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 91 EKFC-DYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKR 156 (165)
T ss_dssp HHHG-GGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC---
T ss_pred HHhh-cCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCC
Confidence 9997 99999999999999999999999999999999999999999999999999999998876553
No 35
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.85 E-value=1.5e-21 Score=145.12 Aligned_cols=100 Identities=19% Similarity=0.398 Sum_probs=84.8
Q ss_pred ceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEecCC
Q 019392 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (341)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a~~ 288 (341)
++|||+|||+++++++|+++|+ .||.|.+|+|+.+ ++|||||+|.+.++|.+|++.||+..++|+.|+|+++++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 74 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFS-YYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTG 74 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHH-HHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccC
Confidence 4799999999999999999996 9999999999876 789999999999999999999999999999999999998
Q ss_pred CCCCCccccccchhhhcCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCC
Q 019392 289 KKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALD 336 (341)
Q Consensus 289 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~ 336 (341)
+........ .........+|||+||+
T Consensus 75 ~~~~~~~~~----------------------~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 75 MPRRSRFDR----------------------PPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCCSSCCCS----------------------CCCSCCCCSCCCSCCCC
T ss_pred CCCcccCCC----------------------CCccccCCCceecCCCC
Confidence 764421100 11122457789999997
No 36
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.85 E-value=5e-21 Score=136.85 Aligned_cols=81 Identities=37% Similarity=0.705 Sum_probs=78.0
Q ss_pred ceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEecCC
Q 019392 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (341)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a~~ 288 (341)
.+|||+|||+++++++|+++|+ .||.|.+|++++++.+++++|||||+|.+.++|.+|++.|||..++|+.|+|+|+++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFK-DFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHT-TSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHH-hcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 5899999999999999999996 999999999999999999999999999999999999999999999999999999988
Q ss_pred CC
Q 019392 289 KK 290 (341)
Q Consensus 289 k~ 290 (341)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 37
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.85 E-value=1e-20 Score=144.04 Aligned_cols=90 Identities=31% Similarity=0.627 Sum_probs=83.9
Q ss_pred cccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEE
Q 019392 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (341)
Q Consensus 203 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~ 282 (341)
.+....++|||+|||+++++++|+++|+ .||.|.+|+|++++.++.++|||||+|.+.++|.+||+.||+..|+|+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFA-PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 88 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3455778999999999999999999997 999999999999988999999999999999999999999999999999999
Q ss_pred EEecCCCCCCC
Q 019392 283 IDVATPKKASG 293 (341)
Q Consensus 283 v~~a~~k~~~~ 293 (341)
|.|++++....
T Consensus 89 V~~a~~~~~~~ 99 (115)
T 2dgo_A 89 TNWATRKPPAP 99 (115)
T ss_dssp EEESSCCCCCS
T ss_pred EEEccCCCCCC
Confidence 99999887653
No 38
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.85 E-value=3.6e-21 Score=138.86 Aligned_cols=82 Identities=35% Similarity=0.691 Sum_probs=76.9
Q ss_pred CCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEec
Q 019392 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (341)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a 286 (341)
+.++|||+|||.++++++|+++|+ .||.|.+|+|+.++.+++++|||||+|.+.++|.+|++.|||..++|+.|+|+|+
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFA-PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHH-hcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 567999999999999999999997 9999999999999889999999999999999999999999999999999999999
Q ss_pred CCC
Q 019392 287 TPK 289 (341)
Q Consensus 287 ~~k 289 (341)
+++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 875
No 39
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=7e-21 Score=139.76 Aligned_cols=87 Identities=32% Similarity=0.654 Sum_probs=82.0
Q ss_pred CCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEe
Q 019392 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (341)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~ 285 (341)
.+.++|||+|||+++++++|+++|+ .||.|.+|+|++++.+++++|||||+|.+.++|.+|++.||+..|+|+.|+|+|
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFE-PFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHT-TTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHH-hcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 3567999999999999999999996 999999999999998999999999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 019392 286 ATPKKASG 293 (341)
Q Consensus 286 a~~k~~~~ 293 (341)
+.++....
T Consensus 82 a~~~~~~~ 89 (95)
T 2dnz_A 82 VTERLDGG 89 (95)
T ss_dssp SSCCCCCC
T ss_pred cccccCCC
Confidence 99887653
No 40
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1.2e-20 Score=139.86 Aligned_cols=86 Identities=19% Similarity=0.408 Sum_probs=80.6
Q ss_pred ccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEE
Q 019392 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (341)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v 283 (341)
.....++|||+|||+++++++|+++|+ .||.|.+|+|+.++ +++++|||||+|.+.++|.+|++.||+..|+|+.|+|
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 90 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICK-AHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKV 90 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHT-TTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHH-hCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 345678999999999999999999996 99999999999997 8999999999999999999999999999999999999
Q ss_pred EecCCCCC
Q 019392 284 DVATPKKA 291 (341)
Q Consensus 284 ~~a~~k~~ 291 (341)
.|++++..
T Consensus 91 ~~a~~~~~ 98 (100)
T 2do4_A 91 AISNSGPS 98 (100)
T ss_dssp EECCCCSC
T ss_pred EECCCCCC
Confidence 99998764
No 41
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=6.2e-21 Score=142.24 Aligned_cols=88 Identities=26% Similarity=0.445 Sum_probs=83.0
Q ss_pred ccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEE
Q 019392 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (341)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v 283 (341)
+....++|||+|||+++++++|+++|+ .||.|.+|+|++++.+++++|||||+|.+.++|.+||+.||+..|+|+.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFR-PFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 89 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTST-TTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 355678999999999999999999997 9999999999999989999999999999999999999999999999999999
Q ss_pred EecCCCCCC
Q 019392 284 DVATPKKAS 292 (341)
Q Consensus 284 ~~a~~k~~~ 292 (341)
.|+.++...
T Consensus 90 ~~a~~~~~~ 98 (103)
T 2cq0_A 90 EWAKPSTNS 98 (103)
T ss_dssp EESSCCCCS
T ss_pred EECCCCCCC
Confidence 999988755
No 42
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=7.1e-21 Score=140.84 Aligned_cols=87 Identities=26% Similarity=0.367 Sum_probs=82.1
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~ 284 (341)
....++|||+|||+++++++|+++|+ .||.|.+|+|++++.+++++|||||+|.+.++|.+||+.||+..|+|+.|+|.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFS-AYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHH-TTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34667999999999999999999996 99999999999998899999999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 019392 285 VATPKKAS 292 (341)
Q Consensus 285 ~a~~k~~~ 292 (341)
++.++...
T Consensus 84 ~a~~~~~~ 91 (99)
T 1whw_A 84 PSTIKKEA 91 (99)
T ss_dssp ECCCCSTT
T ss_pred EcCCCccc
Confidence 99998765
No 43
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.3e-20 Score=139.50 Aligned_cols=87 Identities=25% Similarity=0.481 Sum_probs=81.4
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~ 284 (341)
....++|||+|||+++++++|+++|+ .||.|.+|+|++++.+++++|||||+|.+.++|.+||+ ||+..|+|+.|+|.
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFK-KFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHS-SSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 44678999999999999999999996 99999999999999999999999999999999999997 99999999999999
Q ss_pred ecCCCCCCC
Q 019392 285 VATPKKASG 293 (341)
Q Consensus 285 ~a~~k~~~~ 293 (341)
++.++....
T Consensus 85 ~a~~~~~~~ 93 (99)
T 2dgs_A 85 RAEPRDSKS 93 (99)
T ss_dssp ECCCCCCCC
T ss_pred ECCCCcccC
Confidence 999887653
No 44
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.85 E-value=6e-21 Score=140.38 Aligned_cols=85 Identities=26% Similarity=0.457 Sum_probs=80.6
Q ss_pred CCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEec
Q 019392 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (341)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a 286 (341)
++++|||+|||.++++++|+++|+ .||.|.+|+|+.++.+|+++|||||+|.+.++|.+|++.|||..|+|+.|+|+++
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 79 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCS-NVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYS 79 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHH-TTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCcEEEEECCCCCCCHHHHHHHHH-hcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEc
Confidence 357999999999999999999997 9999999999999989999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 019392 287 TPKKAS 292 (341)
Q Consensus 287 ~~k~~~ 292 (341)
.++...
T Consensus 80 ~~~~~~ 85 (96)
T 2x1f_A 80 SNSDIS 85 (96)
T ss_dssp SCSSGG
T ss_pred CCCCCC
Confidence 987644
No 45
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.85 E-value=7.6e-21 Score=144.72 Aligned_cols=89 Identities=26% Similarity=0.431 Sum_probs=83.0
Q ss_pred ccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEE
Q 019392 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (341)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v 283 (341)
.....++|||+|||+++++++|+++|+ .||.|.+|+|++++.+++++|||||+|.+.++|.+||+.||+..|+|+.|+|
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFM-PFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHG-GGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 344668999999999999999999996 9999999999999889999999999999999999999999999999999999
Q ss_pred EecCCCCCCC
Q 019392 284 DVATPKKASG 293 (341)
Q Consensus 284 ~~a~~k~~~~ 293 (341)
+|++++....
T Consensus 100 ~~a~~~~~~~ 109 (115)
T 2cpz_A 100 QLKRSKNDSK 109 (115)
T ss_dssp ECCCCSCCCC
T ss_pred EEcCCCCcCC
Confidence 9999887653
No 46
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.84 E-value=1.4e-20 Score=141.33 Aligned_cols=87 Identities=29% Similarity=0.663 Sum_probs=81.5
Q ss_pred cccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEE
Q 019392 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (341)
Q Consensus 203 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~ 282 (341)
......++|||+|||+++++++|+++|+ .||.|.+|+|++++.+++++|||||+|.+.++|.+|++.|||..|+|+.|+
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFE-PFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHT-TTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3345678999999999999999999996 999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCC
Q 019392 283 IDVATPKK 290 (341)
Q Consensus 283 v~~a~~k~ 290 (341)
|++++++.
T Consensus 100 V~~a~~k~ 107 (108)
T 2jrs_A 100 VGHVTERT 107 (108)
T ss_dssp EECSCSSC
T ss_pred EEEcccCC
Confidence 99998864
No 47
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=8.7e-21 Score=141.17 Aligned_cols=88 Identities=25% Similarity=0.508 Sum_probs=82.7
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~ 284 (341)
....++|||+|||+++++++|+++|+ .||.|.+|+|++++.+++++|||||+|.+.++|.+|++.||+..|+|+.|+|.
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFI-PFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHT-TTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhh-ccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 44678999999999999999999996 99999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q 019392 285 VATPKKASG 293 (341)
Q Consensus 285 ~a~~k~~~~ 293 (341)
|++++....
T Consensus 88 ~a~~~~~~~ 96 (102)
T 2cqb_A 88 LAKPMRIKE 96 (102)
T ss_dssp ECCCCCCCC
T ss_pred eCCCCCCCC
Confidence 999887653
No 48
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.84 E-value=1.6e-21 Score=141.61 Aligned_cols=83 Identities=17% Similarity=0.268 Sum_probs=72.8
Q ss_pred ceEEeCCCCCCCCHHHHHHHhcccCC--CeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEec
Q 019392 209 LSIFVGDLAPDVTDSILQETFSSKYP--SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (341)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~e~~G--~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a 286 (341)
.+|||+|||+++++++|+++|+ .|| .|.+|+|+.|+.+|+++|||||+|.+.++|.+||+.|||..|+|+.|+|.++
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~-~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVH-SLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPS 80 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHH-TTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHH-HhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEEC
Confidence 4799999999999999999996 999 9999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 019392 287 TPKKAS 292 (341)
Q Consensus 287 ~~k~~~ 292 (341)
.++...
T Consensus 81 ~~~~~~ 86 (90)
T 3p5t_L 81 NKLEHH 86 (90)
T ss_dssp ------
T ss_pred CCCccc
Confidence 887544
No 49
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=9.1e-21 Score=141.33 Aligned_cols=89 Identities=24% Similarity=0.385 Sum_probs=82.8
Q ss_pred ccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEE
Q 019392 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (341)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v 283 (341)
.....++|||+|||+++++++|+++|+ .||.|.+|.|+.++.+++++|||||+|.+.++|.+||+.||+..|+|+.|+|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFE-KYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHT-TTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 345678999999999999999999996 9999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCC
Q 019392 284 DVATPKKASG 293 (341)
Q Consensus 284 ~~a~~k~~~~ 293 (341)
.+++++....
T Consensus 88 ~~a~~~~~~~ 97 (103)
T 2dnm_A 88 QVARYGRRDL 97 (103)
T ss_dssp EECSSCCSCC
T ss_pred EECCcCCCCC
Confidence 9999876553
No 50
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.4e-20 Score=138.10 Aligned_cols=85 Identities=24% Similarity=0.407 Sum_probs=79.9
Q ss_pred cccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEE
Q 019392 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (341)
Q Consensus 203 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~ 282 (341)
....+.++|||+|||+++++++|+++|+ .||.|.+|+|++++.+++++|||||+|.+.++|.+|++.|||..|+|+.|+
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFS-KYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 88 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHH-TTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHH-hcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3445678999999999999999999996 999999999999999999999999999999999999999999999999999
Q ss_pred EEecCC
Q 019392 283 IDVATP 288 (341)
Q Consensus 283 v~~a~~ 288 (341)
|+|+++
T Consensus 89 v~~a~~ 94 (95)
T 2cqc_A 89 VSGPSS 94 (95)
T ss_dssp EECCSC
T ss_pred EEecCC
Confidence 999875
No 51
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.1e-20 Score=141.34 Aligned_cols=88 Identities=28% Similarity=0.496 Sum_probs=82.7
Q ss_pred ccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEE
Q 019392 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (341)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v 283 (341)
.....++|||+|||+++++++|+++|+ .||.|.+|+|+.++.+++++|||||+|.+.++|.+||+.||+..|+|+.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFL-QAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHH-TTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 345678999999999999999999996 9999999999999889999999999999999999999999999999999999
Q ss_pred EecCCCCCC
Q 019392 284 DVATPKKAS 292 (341)
Q Consensus 284 ~~a~~k~~~ 292 (341)
.++.++...
T Consensus 90 ~~a~~~~~~ 98 (105)
T 1x5u_A 90 NKASAHNKN 98 (105)
T ss_dssp EETTTTSCC
T ss_pred EECCCCCcC
Confidence 999987655
No 52
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.1e-20 Score=141.76 Aligned_cols=86 Identities=23% Similarity=0.436 Sum_probs=81.0
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~ 284 (341)
....++|||+|||+++++++|+++|+ .||.|.+|.|+.++.+++++|||||+|.+.++|.+|++.|||..|+|+.|+|+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFA-EYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHh-ccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 44667999999999999999999997 99999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 019392 285 VATPKKA 291 (341)
Q Consensus 285 ~a~~k~~ 291 (341)
|+.++..
T Consensus 99 ~a~~~~~ 105 (106)
T 1p27_B 99 WCFVRGP 105 (106)
T ss_dssp ESEESSC
T ss_pred eecCCCC
Confidence 9988653
No 53
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.84 E-value=1.2e-20 Score=143.66 Aligned_cols=86 Identities=21% Similarity=0.444 Sum_probs=80.3
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~ 284 (341)
....++|||+|||+++++++|+++|+ .||.|.+|.|+.++ +++++|||||+|.+.++|.+|++.|||..|+|+.|+|+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFG-KHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHH-TSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567999999999999999999996 99999999999997 89999999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 019392 285 VATPKKAS 292 (341)
Q Consensus 285 ~a~~k~~~ 292 (341)
|++++...
T Consensus 82 ~a~~~~~~ 89 (116)
T 2fy1_A 82 QAKKPSFQ 89 (116)
T ss_dssp ECCCSSCS
T ss_pred ECCCCCCC
Confidence 99887654
No 54
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=7.5e-21 Score=139.89 Aligned_cols=87 Identities=32% Similarity=0.678 Sum_probs=81.7
Q ss_pred CCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEE-EEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEE
Q 019392 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGA-KVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (341)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v-~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~ 284 (341)
.+.++|||+|||+++++++|+++|+ .||.|.+| +|++++.++.++|||||+|.+.++|.+|++.||+..|+|+.|+|+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFS-AFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHH-TTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3567999999999999999999996 99999999 999998999999999999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q 019392 285 VATPKKASG 293 (341)
Q Consensus 285 ~a~~k~~~~ 293 (341)
|+.++....
T Consensus 82 ~a~~~~~~~ 90 (96)
T 1x5t_A 82 YAFKKDSKG 90 (96)
T ss_dssp ESCCCCCCC
T ss_pred EecccCCCC
Confidence 999887553
No 55
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.84 E-value=1e-20 Score=146.69 Aligned_cols=87 Identities=25% Similarity=0.442 Sum_probs=81.9
Q ss_pred ccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEE
Q 019392 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (341)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v 283 (341)
...+.++|||+|||+++++++|+++|+ .||.|.+|+|++++.+++++|||||+|.+.++|.+||+.|||..|+|+.|+|
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFS-KYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHT-TTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 345678999999999999999999996 9999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCC
Q 019392 284 DVATPKKA 291 (341)
Q Consensus 284 ~~a~~k~~ 291 (341)
+|+.+++.
T Consensus 121 ~~a~~~~p 128 (129)
T 2kxn_B 121 DFSITKRP 128 (129)
T ss_dssp SCCSSSSC
T ss_pred EEecCCCC
Confidence 99998764
No 56
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.84 E-value=8.6e-21 Score=136.25 Aligned_cols=81 Identities=25% Similarity=0.512 Sum_probs=77.5
Q ss_pred CCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEe
Q 019392 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (341)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~ 285 (341)
.+.++|||+|||+++++++|+++|+ .||.|.+|+|++++.+++++|||||+|.+.++|.+|++.|||..++|+.|+|+|
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFI-PFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHG-GGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHh-ccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4678999999999999999999996 999999999999989999999999999999999999999999999999999999
Q ss_pred cC
Q 019392 286 AT 287 (341)
Q Consensus 286 a~ 287 (341)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 57
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=2e-20 Score=141.43 Aligned_cols=89 Identities=18% Similarity=0.455 Sum_probs=83.1
Q ss_pred ccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhC------Ceeec
Q 019392 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN------GVYCS 277 (341)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~------~~~i~ 277 (341)
.....++|||+|||+++++++|+++|+ .||.|.+|+|++++.++.++|||||+|.+.++|.+||+.|| +..|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQ-QFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHH-TTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 345678999999999999999999996 99999999999999999999999999999999999999999 99999
Q ss_pred CccEEEEecCCCCCCC
Q 019392 278 SRPMRIDVATPKKASG 293 (341)
Q Consensus 278 g~~i~v~~a~~k~~~~ 293 (341)
|+.|+|.|+.++....
T Consensus 90 g~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 90 GRQLKVDLAVTRDEAA 105 (111)
T ss_dssp SCEEEEECCCCCCCCC
T ss_pred CEEEEEEECCCCccCC
Confidence 9999999999886653
No 58
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.84 E-value=2e-20 Score=147.41 Aligned_cols=89 Identities=21% Similarity=0.463 Sum_probs=83.1
Q ss_pred ccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEE
Q 019392 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (341)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v 283 (341)
.....++|||+|||+++++++|+++|+ .||.|.+|+|++++.+++++|||||+|.+.++|.+||+.|||..|+|+.|+|
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFE-RYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHH-HHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 345678999999999999999999996 9999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCC
Q 019392 284 DVATPKKASG 293 (341)
Q Consensus 284 ~~a~~k~~~~ 293 (341)
++++++..+.
T Consensus 117 ~~a~~~~~~~ 126 (139)
T 1u6f_A 117 ALAASGHQRP 126 (139)
T ss_dssp EESSCCCCCC
T ss_pred EECCCCCCCC
Confidence 9999886553
No 59
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=2.1e-20 Score=136.90 Aligned_cols=82 Identities=26% Similarity=0.398 Sum_probs=78.0
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~ 284 (341)
....++|||+|||+++++++|+++|+ .||.|.+|+|+.++.+++++|||||+|.+.++|.+|++.||+..|+|+.|+|+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFS-KYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTT-TTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHH-hcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 44678999999999999999999996 99999999999999999999999999999999999999999999999999999
Q ss_pred ecC
Q 019392 285 VAT 287 (341)
Q Consensus 285 ~a~ 287 (341)
|++
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 975
No 60
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.84 E-value=1.6e-20 Score=152.10 Aligned_cols=100 Identities=24% Similarity=0.476 Sum_probs=89.5
Q ss_pred ceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEecCC
Q 019392 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (341)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a~~ 288 (341)
++|||+|||+++++++|+++|+ .||.|.+|+|++++ +++++|||||+|.+.++|.+|++.|||..+.|+.|+|.++.+
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~-~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQ-VGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQ 78 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHG-GGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CEEEECCCCCcCCHHHHHHHHH-hcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCC
Confidence 5899999999999999999996 99999999999996 478999999999999999999999999999999999999877
Q ss_pred CCCCCccccccchhhhcCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCC
Q 019392 289 KKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVR 340 (341)
Q Consensus 289 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t 340 (341)
+... .....++|||+|||.++|
T Consensus 79 ~~~~------------------------------~~~~~~~l~v~nl~~~~t 100 (166)
T 3md3_A 79 SQQS------------------------------SSDDTFNLFVGDLNVNVD 100 (166)
T ss_dssp CCCC------------------------------CCTTCEEEEEESCCTTCC
T ss_pred CCCC------------------------------CCCCCceEEECCCCCCCC
Confidence 6532 123567999999999987
No 61
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.2e-20 Score=140.35 Aligned_cols=88 Identities=33% Similarity=0.573 Sum_probs=82.5
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~ 284 (341)
....++|||+|||+++++++|+++|+ .||.|.+|+|++++.+++++|||||+|.+.++|.+|++.||+..|+|+.|+|.
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFS-KYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHH-HHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHH-hcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 44678999999999999999999996 99999999999999899999999999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q 019392 285 VATPKKASG 293 (341)
Q Consensus 285 ~a~~k~~~~ 293 (341)
|++++....
T Consensus 88 ~a~~~~~~~ 96 (102)
T 1x5s_A 88 QAGKSSDNR 96 (102)
T ss_dssp EEECCCCCC
T ss_pred ECCCCCCCC
Confidence 999877553
No 62
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.84 E-value=1.4e-20 Score=142.08 Aligned_cols=87 Identities=22% Similarity=0.411 Sum_probs=81.5
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~ 284 (341)
....++|||+|||+++++++|+++|+ .||.|.+|+|+.++.+++++|||||+|.+.++|.+|++.|||..|+|+.|+|.
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFC-DYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHG-GGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 44668999999999999999999996 99999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 019392 285 VATPKKAS 292 (341)
Q Consensus 285 ~a~~k~~~ 292 (341)
|+.++..+
T Consensus 102 ~a~~~~~~ 109 (110)
T 1oo0_B 102 WCFVKGPK 109 (110)
T ss_dssp ESEESSCC
T ss_pred EcccCCCC
Confidence 99887543
No 63
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.84 E-value=3.5e-20 Score=138.63 Aligned_cols=87 Identities=23% Similarity=0.422 Sum_probs=80.8
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecC---ccE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSS---RPM 281 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g---~~i 281 (341)
....++|||+|||+++++++|+++|+ .||.|.+|+|++++ +++++|||||+|.+.++|.+||+.||+..+.| +.|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQ-PFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHT-TTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 34678999999999999999999997 99999999999996 79999999999999999999999999999988 999
Q ss_pred EEEecCCCCCCC
Q 019392 282 RIDVATPKKASG 293 (341)
Q Consensus 282 ~v~~a~~k~~~~ 293 (341)
+|.|++++..+.
T Consensus 90 ~V~~a~~~~~~~ 101 (105)
T 2dnh_A 90 VVKFADTDKESG 101 (105)
T ss_dssp EEEESCSSCCCS
T ss_pred EEEECccCcccC
Confidence 999999887653
No 64
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=2.9e-20 Score=139.60 Aligned_cols=88 Identities=18% Similarity=0.360 Sum_probs=82.3
Q ss_pred ccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEec-CCCCCCccEEEEEeCCHHHHHHHHHHh-CCeeecCccE
Q 019392 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIID-SNTGRTKGYGFVRFGDENERSRAMTEM-NGVYCSSRPM 281 (341)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~-~~~~~~~g~afV~F~~~~~A~~Al~~l-~~~~i~g~~i 281 (341)
.....++|||+|||+++++++|+++|+ .||.|.+|+|+++ +.+++++|||||+|.+.++|.+||+.| |+..|.|+.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFS-TFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHH-TTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHH-ccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 345678999999999999999999996 9999999999999 789999999999999999999999999 9999999999
Q ss_pred EEEecCCCCCC
Q 019392 282 RIDVATPKKAS 292 (341)
Q Consensus 282 ~v~~a~~k~~~ 292 (341)
+|.|++++...
T Consensus 90 ~v~~a~~~~~~ 100 (107)
T 2cph_A 90 VLEWADSEVTV 100 (107)
T ss_dssp EEEECCCCCCC
T ss_pred EEEeCCCCCCC
Confidence 99999987655
No 65
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.83 E-value=2.8e-20 Score=137.58 Aligned_cols=83 Identities=27% Similarity=0.393 Sum_probs=78.4
Q ss_pred ccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeE--------EEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCee
Q 019392 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKG--------AKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY 275 (341)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~--------v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~ 275 (341)
.....++|||+|||+++++++|+++|+ .||.|.+ |+|++++.+|+++|||||+|.+.++|.+|++.|||..
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFK-QIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHT-TTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-HhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 345678999999999999999999997 9999999 9999999999999999999999999999999999999
Q ss_pred ecCccEEEEecC
Q 019392 276 CSSRPMRIDVAT 287 (341)
Q Consensus 276 i~g~~i~v~~a~ 287 (341)
++|+.|+|++|+
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999974
No 66
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.83 E-value=1.3e-20 Score=139.05 Aligned_cols=82 Identities=27% Similarity=0.465 Sum_probs=76.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcccc
Q 019392 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (341)
Q Consensus 113 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (341)
...++|||+|||+++|+++|+++|+.||.|.+|++++|+.+|+++|||||+|.+.++|.+|++.|||..+ .++.++|.
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~--~gr~l~V~ 94 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRL--QSKTIKVS 94 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEE--CCEEEEEE
Confidence 4567899999999999999999999999999999999999999999999999999999999999999999 67889998
Q ss_pred cccc
Q 019392 193 WATF 196 (341)
Q Consensus 193 ~~~~ 196 (341)
|+.+
T Consensus 95 ~AkP 98 (99)
T 4fxv_A 95 YARP 98 (99)
T ss_dssp ECCB
T ss_pred EeeC
Confidence 8853
No 67
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=1.4e-20 Score=138.99 Aligned_cols=87 Identities=17% Similarity=0.384 Sum_probs=80.5
Q ss_pred CCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCC---CCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEE
Q 019392 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSN---TGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (341)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~---~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~ 282 (341)
.+.++|||+|||+++++++|+++|+ .||.|.+|+|++++. +++++|||||+|.+.++|.+|++.||+..|+|+.|+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFS-KVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHH-TTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 3567999999999999999999996 999999999999876 668999999999999999999999999999999999
Q ss_pred EEecCCCCCCC
Q 019392 283 IDVATPKKASG 293 (341)
Q Consensus 283 v~~a~~k~~~~ 293 (341)
|++++++....
T Consensus 82 V~~a~~~~~~~ 92 (98)
T 2cpf_A 82 VRISERATKPA 92 (98)
T ss_dssp EECSSCSSCCC
T ss_pred EEEccCCCCCC
Confidence 99999876553
No 68
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=3e-20 Score=138.51 Aligned_cols=88 Identities=31% Similarity=0.617 Sum_probs=81.5
Q ss_pred cccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEE
Q 019392 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (341)
Q Consensus 203 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~ 282 (341)
......++|||+|||+++++++|+++|+ .||.|.+|+|+.+ ++.++|||||+|.+.++|.+||+.||+..|+|+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFS-PFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 86 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTT-TTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 3345778999999999999999999996 9999999999998 789999999999999999999999999999999999
Q ss_pred EEecCCCCCCC
Q 019392 283 IDVATPKKASG 293 (341)
Q Consensus 283 v~~a~~k~~~~ 293 (341)
|.|+.++....
T Consensus 87 V~~a~~~~~~~ 97 (103)
T 2d9p_A 87 VALAQRKEERQ 97 (103)
T ss_dssp EEECSSCCCCC
T ss_pred EEEecccccCC
Confidence 99999987653
No 69
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.83 E-value=2.3e-21 Score=143.65 Aligned_cols=83 Identities=27% Similarity=0.327 Sum_probs=78.8
Q ss_pred CCceEEeCCCCC------CCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecC-c
Q 019392 207 SDLSIFVGDLAP------DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSS-R 279 (341)
Q Consensus 207 ~~~~l~v~nlp~------~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g-~ 279 (341)
..++|||+|||+ ++++++|+++|+ .||.|.+|+|++|+.||+++|||||+|.+.++|.+||+.|||..|+| +
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~-~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFS-KAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHH-TTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHH-hcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 457999999999 999999999997 99999999999999999999999999999999999999999999999 9
Q ss_pred cEEEEecCCCC
Q 019392 280 PMRIDVATPKK 290 (341)
Q Consensus 280 ~i~v~~a~~k~ 290 (341)
.|+|.++.++.
T Consensus 84 ~l~V~~a~~~~ 94 (100)
T 3ns6_A 84 RLFLYTMKDVE 94 (100)
T ss_dssp BCEEEESHHHH
T ss_pred EEEEEECchhh
Confidence 99999998753
No 70
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.7e-20 Score=140.06 Aligned_cols=87 Identities=52% Similarity=0.890 Sum_probs=81.3
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhccc-CCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCee-ecCccEE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSK-YPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY-CSSRPMR 282 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~-~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~-i~g~~i~ 282 (341)
....++|||+|||+++++++|+++|+ . ||.|.+|+|++++ +++++|||||+|.+.++|.+||+.||+.. |+|+.|+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~-~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFV-KVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHH-HHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHH-HhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 45678999999999999999999996 8 9999999999997 89999999999999999999999999999 9999999
Q ss_pred EEecCCCCCCC
Q 019392 283 IDVATPKKASG 293 (341)
Q Consensus 283 v~~a~~k~~~~ 293 (341)
|.++.++....
T Consensus 84 v~~a~~~~~~~ 94 (104)
T 2dhg_A 84 LSVAIPKASRV 94 (104)
T ss_dssp CCBCCCCCSCC
T ss_pred EEEccCCCcCC
Confidence 99998876554
No 71
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=2.5e-20 Score=137.84 Aligned_cols=86 Identities=23% Similarity=0.429 Sum_probs=80.7
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCee-EEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCcc---
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVK-GAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP--- 280 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~-~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~--- 280 (341)
....++|||+|||+++++++|+++|+ .||.|. +|+|++++.+++++|||||+|.+.++|.+|++.|||..|.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFA-TMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHH-HTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHH-HhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 34678999999999999999999996 999999 9999999999999999999999999999999999999999999
Q ss_pred -EEEEecCCCCC
Q 019392 281 -MRIDVATPKKA 291 (341)
Q Consensus 281 -i~v~~a~~k~~ 291 (341)
|+|.|+++...
T Consensus 85 ~l~v~~a~~~~~ 96 (99)
T 2div_A 85 RFKLNYATYSGP 96 (99)
T ss_dssp ECCEEETTCCSS
T ss_pred eEEEeecCCCCC
Confidence 99999987654
No 72
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.8e-20 Score=141.03 Aligned_cols=88 Identities=30% Similarity=0.473 Sum_probs=81.4
Q ss_pred ccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEE
Q 019392 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (341)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v 283 (341)
.....++|||+|||+++++++|+++|+ .||.|.+|+|++++.+++++|||||+|.+.++|.+||+.|++ .|+|+.|+|
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V 90 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFE-GFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANV 90 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHH-TTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEE
Confidence 345678999999999999999999996 999999999999999999999999999999999999999998 899999999
Q ss_pred EecCCCCCCC
Q 019392 284 DVATPKKASG 293 (341)
Q Consensus 284 ~~a~~k~~~~ 293 (341)
+|+.++....
T Consensus 91 ~~a~~~~~~~ 100 (116)
T 2cqd_A 91 NLAYLGAKPR 100 (116)
T ss_dssp EESTTTCCCC
T ss_pred EEcccCCCcc
Confidence 9998775543
No 73
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.83 E-value=4e-20 Score=137.78 Aligned_cols=87 Identities=20% Similarity=0.463 Sum_probs=80.6
Q ss_pred ccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEE
Q 019392 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (341)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v 283 (341)
.....++|||+|||+++++++|+++|+ .|| |.+|+|++++.+++++|||||+|.+.++|.+|| .||+..|+|+.|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 87 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFK-DLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRV 87 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTT-TSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHH-hCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEE
Confidence 345678999999999999999999996 997 999999999999999999999999999999999 99999999999999
Q ss_pred EecCCCCCCC
Q 019392 284 DVATPKKASG 293 (341)
Q Consensus 284 ~~a~~k~~~~ 293 (341)
.++.++....
T Consensus 88 ~~a~~~~~~~ 97 (103)
T 2dng_A 88 DIAEGRKQDK 97 (103)
T ss_dssp EECCCCCCCC
T ss_pred EEecCCCCCC
Confidence 9999876553
No 74
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.83 E-value=2.4e-20 Score=139.81 Aligned_cols=87 Identities=17% Similarity=0.399 Sum_probs=81.6
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeee---cCccE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC---SSRPM 281 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i---~g~~i 281 (341)
....++|||+|||+++++++|+++|+ .||.|.+|+|+.++.+++++|||||+|.+.++|.+|++.||+..+ .|+.|
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFE-EFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHH-HHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 45678999999999999999999996 999999999999999999999999999999999999999999887 89999
Q ss_pred EEEecCCCCCC
Q 019392 282 RIDVATPKKAS 292 (341)
Q Consensus 282 ~v~~a~~k~~~ 292 (341)
+|.++.++...
T Consensus 89 ~v~~a~~~~~~ 99 (106)
T 2dgp_A 89 QVKPADSESRG 99 (106)
T ss_dssp EEEECCCCSCC
T ss_pred EEEECCccccc
Confidence 99999987654
No 75
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.4e-20 Score=140.65 Aligned_cols=88 Identities=24% Similarity=0.334 Sum_probs=82.3
Q ss_pred ccCCCceEEeCCCCCCCCHHHHHHHhcccCCCee--------EEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCee
Q 019392 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVK--------GAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY 275 (341)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~--------~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~ 275 (341)
+....++|||+|||+++++++|+++|+ .||.|. .|+|+.++.+++++|||||+|.+.++|.+||+.||+..
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFK-QCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHT-TTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHH-hcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 345678999999999999999999996 999999 69999999999999999999999999999999999999
Q ss_pred ecCccEEEEecCCCCCC
Q 019392 276 CSSRPMRIDVATPKKAS 292 (341)
Q Consensus 276 i~g~~i~v~~a~~k~~~ 292 (341)
|.|+.|+|.+++++...
T Consensus 90 ~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPPM 106 (113)
T ss_dssp ETTEECEEECSSCCCCS
T ss_pred cCCCEEEEEECCCCCCC
Confidence 99999999999988765
No 76
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.83 E-value=4.1e-21 Score=178.58 Aligned_cols=88 Identities=23% Similarity=0.456 Sum_probs=82.2
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~ 284 (341)
....++|||+|||+.+|+++|.++|+ .||.|..|.|+.++.+++++|||||+|.+.++|.+||..|||..|+|+.|.|.
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~ 177 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFE-VYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 177 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-HcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567999999999999999999997 99999999999999899999999999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q 019392 285 VATPKKASG 293 (341)
Q Consensus 285 ~a~~k~~~~ 293 (341)
|+.++....
T Consensus 178 ~a~~~~~~~ 186 (437)
T 3pgw_S 178 VERGRTVKG 186 (437)
T ss_pred EeCCCCCCC
Confidence 999876544
No 77
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.5e-20 Score=137.78 Aligned_cols=86 Identities=23% Similarity=0.448 Sum_probs=80.2
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCC-CCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNT-GRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~-~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v 283 (341)
..+.++|||+|||+++++++|+++|+ .|| |.+|+|++++.+ ++++|||||+|.+.++|.+|| .||+..|+|+.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFR-GLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTT-TSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHH-HCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 44668999999999999999999996 999 999999999887 999999999999999999999 99999999999999
Q ss_pred EecCCCCCCC
Q 019392 284 DVATPKKASG 293 (341)
Q Consensus 284 ~~a~~k~~~~ 293 (341)
.++.++....
T Consensus 89 ~~a~~~~~~~ 98 (104)
T 1wi8_A 89 DVADQAQDKD 98 (104)
T ss_dssp EECCCCCCCC
T ss_pred EEccCCCCCC
Confidence 9999887653
No 78
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.82 E-value=2.8e-20 Score=134.46 Aligned_cols=84 Identities=21% Similarity=0.403 Sum_probs=77.9
Q ss_pred CCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCC-CccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEe
Q 019392 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGR-TKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (341)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~-~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~ 285 (341)
..++|||+|||+++++++|+++|+ .||.|.+|.|+.++.++. ++|||||+|.+.++|.+|++.|||..++|+.|+|++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFS-TYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHH-TTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 457899999999999999999996 999999999999987665 899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 019392 286 ATPKKA 291 (341)
Q Consensus 286 a~~k~~ 291 (341)
+.+...
T Consensus 82 a~~~~~ 87 (88)
T 4a8x_A 82 VLAPWP 87 (88)
T ss_dssp ECCCCC
T ss_pred CCCCCC
Confidence 987653
No 79
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.82 E-value=2.4e-20 Score=158.01 Aligned_cols=112 Identities=17% Similarity=0.318 Sum_probs=91.1
Q ss_pred CCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEec
Q 019392 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (341)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a 286 (341)
..++|||+|||+++++++|+++|+ .||.|.+|+|++++.+++++|||||+|.+.++|.+|++.||+..|+|+.|+|.++
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFA-PFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHG-GGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred cCCEEEEECCCCCCCHHHHHHHHH-hCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 456999999999999999999996 9999999999999889999999999999999999999999999999999999988
Q ss_pred CCCCCCCccccccchhhhcCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCC
Q 019392 287 TPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVR 340 (341)
Q Consensus 287 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t 340 (341)
..+.......... .......++|||+|||.++|
T Consensus 106 ~~~~~~~~~~~~~---------------------~~~~~~~~~l~v~nlp~~~t 138 (216)
T 2qfj_A 106 SNIGQAQPIIDQL---------------------AEEARAFNRIYVASVHQDLS 138 (216)
T ss_dssp SCCGGGHHHHHHH---------------------HHHHTTSCEEEEECCCTTCC
T ss_pred CCccccchhhhhh---------------------hcccCCCcEEEEeCCCCcCC
Confidence 7654322100000 00123568999999999987
No 80
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.82 E-value=2.1e-20 Score=149.53 Aligned_cols=83 Identities=20% Similarity=0.275 Sum_probs=78.2
Q ss_pred CCceEEeCCCCCCCCHHHHHHHhcccCC--CeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEE
Q 019392 207 SDLSIFVGDLAPDVTDSILQETFSSKYP--SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (341)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~e~~G--~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~ 284 (341)
..++|||+|||+++++++|+++|+ .|| .|.+|+|++|+.+|+++|||||+|.+.++|.+||+.|||..|+|+.|+|.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~-~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIR-SIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHH-HTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-HHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 457999999999999999999996 999 99999999999999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 019392 285 VATPKK 290 (341)
Q Consensus 285 ~a~~k~ 290 (341)
++.++.
T Consensus 133 ~a~~~~ 138 (156)
T 3n9u_C 133 PATRQN 138 (156)
T ss_dssp ECCHHH
T ss_pred EcCCCc
Confidence 998764
No 81
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.82 E-value=4.6e-20 Score=133.62 Aligned_cols=81 Identities=20% Similarity=0.420 Sum_probs=77.2
Q ss_pred CceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEecC
Q 019392 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVAT 287 (341)
Q Consensus 208 ~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a~ 287 (341)
.++|||+|||+++++++|+++|+ .||.|.+|+++.++.+++++|||||+|.+.++|.+|+ .||+..++|+.|+|.+++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFH-GCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHG-GGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 46899999999999999999997 9999999999999889999999999999999999999 999999999999999998
Q ss_pred CCC
Q 019392 288 PKK 290 (341)
Q Consensus 288 ~k~ 290 (341)
++.
T Consensus 84 ~~~ 86 (89)
T 3ucg_A 84 TNR 86 (89)
T ss_dssp TTS
T ss_pred CCC
Confidence 753
No 82
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=3.5e-20 Score=138.67 Aligned_cols=88 Identities=26% Similarity=0.400 Sum_probs=82.0
Q ss_pred cccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEE
Q 019392 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (341)
Q Consensus 203 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~ 282 (341)
......++|||+|||+++++++|+++|+ .||.|.+|+|++++.+++++|||||+|.+.++|.+||+. ++..|+|+.|+
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~ 88 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFS-QYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNID 88 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHH-TTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEE
Confidence 3455678999999999999999999996 999999999999999999999999999999999999988 99999999999
Q ss_pred EEecCCCCCC
Q 019392 283 IDVATPKKAS 292 (341)
Q Consensus 283 v~~a~~k~~~ 292 (341)
|+++.++...
T Consensus 89 V~~a~~~~~~ 98 (105)
T 2dh8_A 89 PKPCTPRGMQ 98 (105)
T ss_dssp CCCSCCSSCC
T ss_pred EEEccCCCCC
Confidence 9999988755
No 83
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.82 E-value=2.8e-20 Score=142.25 Aligned_cols=84 Identities=29% Similarity=0.495 Sum_probs=78.5
Q ss_pred cccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEE
Q 019392 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (341)
Q Consensus 203 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~ 282 (341)
......++|||+|||+++++++|+++|+ .||.|.+|+|++++.+++++|||||+|.+.++|.+|++.|||..|+|+.|+
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 113 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFL-PFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK 113 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTT-TSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3445678999999999999999999996 999999999999999999999999999999999999999999999999999
Q ss_pred EEecC
Q 019392 283 IDVAT 287 (341)
Q Consensus 283 v~~a~ 287 (341)
|+|++
T Consensus 114 V~~ak 118 (118)
T 2khc_A 114 VQLKK 118 (118)
T ss_dssp EEEC-
T ss_pred EEecC
Confidence 99974
No 84
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.82 E-value=6.5e-20 Score=153.79 Aligned_cols=78 Identities=19% Similarity=0.275 Sum_probs=72.2
Q ss_pred CCceEEeCCCC-CCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEe
Q 019392 207 SDLSIFVGDLA-PDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (341)
Q Consensus 207 ~~~~l~v~nlp-~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~ 285 (341)
+.++|||+||| +.+++++|+++|+ .||.|.+|+|+++ .+|||||+|.+.++|.+||+.|||..+.|+.|+|.+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~-~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFC-LYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHT-TTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHH-hcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 46799999999 8999999999997 9999999999865 379999999999999999999999999999999999
Q ss_pred cCCCC
Q 019392 286 ATPKK 290 (341)
Q Consensus 286 a~~k~ 290 (341)
++.+.
T Consensus 77 s~~~~ 81 (205)
T 3tyt_A 77 SKQPA 81 (205)
T ss_dssp CSCSC
T ss_pred ccCCc
Confidence 97654
No 85
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.82 E-value=5.7e-20 Score=138.29 Aligned_cols=87 Identities=29% Similarity=0.456 Sum_probs=77.4
Q ss_pred ccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEE
Q 019392 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (341)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v 283 (341)
.....++|||+|||+++++++|+++|+ .||.|.+|+|++++.+|+++|||||+|.+.++|.+||+.+ +..|+|+.|+|
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~-~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V 98 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFG-QFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDP 98 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHT-TTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHH-ccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEE
Confidence 345678999999999999999999996 9999999999999999999999999999999999999876 59999999999
Q ss_pred EecCCCCCC
Q 019392 284 DVATPKKAS 292 (341)
Q Consensus 284 ~~a~~k~~~ 292 (341)
.++.++...
T Consensus 99 ~~a~~~~~~ 107 (109)
T 2rs2_A 99 KVAFPRRAQ 107 (109)
T ss_dssp EECCCCCCC
T ss_pred EEccCCCCC
Confidence 999987654
No 86
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.82 E-value=1.4e-19 Score=142.43 Aligned_cols=86 Identities=24% Similarity=0.432 Sum_probs=79.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcc
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (341)
.....++|||+|||+++|+++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|.+|++.|++..| .++.|+
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 115 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNI--LNKRLK 115 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEEC--SSCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCeEEE
Confidence 446789999999999999999999999999999999999998999999999999999999999999999999 677888
Q ss_pred cccccccC
Q 019392 191 LNWATFSG 198 (341)
Q Consensus 191 ~~~~~~~~ 198 (341)
|.|+....
T Consensus 116 v~~a~~~~ 123 (139)
T 1u6f_A 116 VALAASGH 123 (139)
T ss_dssp EEESSCCC
T ss_pred EEECCCCC
Confidence 88887554
No 87
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.1e-19 Score=132.20 Aligned_cols=83 Identities=18% Similarity=0.281 Sum_probs=77.5
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~ 284 (341)
....++|||+|||+++++++|+++|+ .| .|.+|+|+++ .+|+++|||||+|.+.++|.+||+ ||+..|+|+.|+|.
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~-~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLA-PL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHT-TS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHh-hC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEE
Confidence 34567999999999999999999996 99 8999999999 789999999999999999999998 99999999999999
Q ss_pred ecCCCCC
Q 019392 285 VATPKKA 291 (341)
Q Consensus 285 ~a~~k~~ 291 (341)
++.++..
T Consensus 83 ~a~~~~~ 89 (91)
T 2dgw_A 83 REKSGPS 89 (91)
T ss_dssp EESSCCC
T ss_pred ECCcCCC
Confidence 9988754
No 88
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.8e-19 Score=134.21 Aligned_cols=87 Identities=20% Similarity=0.449 Sum_probs=79.6
Q ss_pred ccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEE
Q 019392 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (341)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v 283 (341)
.....++|||+|||+++++++|+++|+ .||.|.+|+|++++. .++|||||+|.+.++|.+|++.||+..|+|+.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFG-QFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGG-GTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 345678999999999999999999996 999999999999854 38999999999999999999999999999999999
Q ss_pred EecCCCCCCC
Q 019392 284 DVATPKKASG 293 (341)
Q Consensus 284 ~~a~~k~~~~ 293 (341)
.|+.++....
T Consensus 88 ~~a~~~~~~~ 97 (103)
T 2cq3_A 88 NNATARVMTN 97 (103)
T ss_dssp EECCSSCCCC
T ss_pred EEcccCCCCC
Confidence 9999887653
No 89
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.82 E-value=5.5e-20 Score=150.40 Aligned_cols=102 Identities=21% Similarity=0.418 Sum_probs=89.4
Q ss_pred CCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCC--CCccEEEEEeCCHHHHHHHHHHhCCeeec---CccE
Q 019392 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTG--RTKGYGFVRFGDENERSRAMTEMNGVYCS---SRPM 281 (341)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~--~~~g~afV~F~~~~~A~~Al~~l~~~~i~---g~~i 281 (341)
..++|||+|||+++++++|+++|+ .||.|.+|+|++++.++ +++|||||+|.+.++|.+|++.||+..+. ++.+
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFE-QYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHH-TTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 457999999999999999999996 99999999999998876 89999999999999999999999998775 6788
Q ss_pred EEEecCCCCCCCccccccchhhhcCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCC
Q 019392 282 RIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVR 340 (341)
Q Consensus 282 ~v~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t 340 (341)
.+.++..+... ....++|||+|||.++|
T Consensus 81 ~~~~~~~~~~~-------------------------------~~~~~~l~v~nl~~~~t 108 (175)
T 3nmr_A 81 QMKPADSEKNN-------------------------------AVEDRKLFIGMISKKCT 108 (175)
T ss_dssp EEEECGGGCCS-------------------------------CGGGSEEEEESCCTTCC
T ss_pred EEccccccccc-------------------------------cCCCCeEEEcCCCCcCC
Confidence 88887665432 12467899999999987
No 90
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=2.1e-19 Score=136.46 Aligned_cols=86 Identities=27% Similarity=0.377 Sum_probs=79.5
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~ 284 (341)
....++|||+|||+++++++|+++|+ .||.|.+|+|+.++ +++++|||||+|.+.++|.+||+.||+..|+|+.|+|+
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~-~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFS-MAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHT-TTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 34578999999999999999999996 99999999999996 59999999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 019392 285 VATPKKAS 292 (341)
Q Consensus 285 ~a~~k~~~ 292 (341)
+++.....
T Consensus 90 ~a~~~~~~ 97 (114)
T 2do0_A 90 MDERALPK 97 (114)
T ss_dssp ECSCCCCC
T ss_pred EcccCCCC
Confidence 99876544
No 91
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.6e-20 Score=136.56 Aligned_cols=82 Identities=15% Similarity=0.187 Sum_probs=73.7
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhC--CeeecCccEE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN--GVYCSSRPMR 282 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~--~~~i~g~~i~ 282 (341)
..+.++|||+|||+++++++|+++|+ .||.|.+|+|+++ ||||||+|++.++|.+|++.|+ +..|+|+.|+
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~-~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGL-PFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHH-HHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 34677999999999999999999996 9999999999864 6899999999999999999886 4789999999
Q ss_pred EEecCCCCCCC
Q 019392 283 IDVATPKKASG 293 (341)
Q Consensus 283 v~~a~~k~~~~ 293 (341)
|.|++++....
T Consensus 86 V~~A~~~~~~~ 96 (105)
T 1sjq_A 86 IQFSNHKELKT 96 (105)
T ss_dssp BCCCSSSSCCC
T ss_pred EEEcCCCCCCc
Confidence 99998876553
No 92
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.6e-19 Score=134.54 Aligned_cols=87 Identities=24% Similarity=0.448 Sum_probs=79.0
Q ss_pred ccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEE
Q 019392 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (341)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v 283 (341)
.....++|||+|||+++++++|+++|+ .||.|.+|+|++++. .++|||||+|.+.++|.+|++.||+..|.|+.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 87 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFS-QIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 87 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHH-HHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHH-hcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEE
Confidence 345678999999999999999999996 999999999999854 37899999999999999999999999999999999
Q ss_pred EecCCCCCCC
Q 019392 284 DVATPKKASG 293 (341)
Q Consensus 284 ~~a~~k~~~~ 293 (341)
.|++++....
T Consensus 88 ~~a~~~~~~~ 97 (103)
T 2cqi_A 88 NWATTPSSQK 97 (103)
T ss_dssp EECCCTTCCC
T ss_pred EECCCCcccc
Confidence 9999876553
No 93
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.5e-20 Score=137.77 Aligned_cols=85 Identities=34% Similarity=0.588 Sum_probs=80.6
Q ss_pred CCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEec
Q 019392 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (341)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a 286 (341)
..++|||+|||+++++++|+++|+ .||.|.+|+|++++.+|+++|||||+|.+.++|.+|++.|||..|+|+.|+|+|+
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~-~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFS-EVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHH-TTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CccEEEEeCCCCcCCHHHHHHHHH-hcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 457999999999999999999996 9999999999999989999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 019392 287 TPKKAS 292 (341)
Q Consensus 287 ~~k~~~ 292 (341)
.++...
T Consensus 86 ~~~~~~ 91 (104)
T 1p1t_A 86 ASEKNK 91 (104)
T ss_dssp TCTTHH
T ss_pred CCccch
Confidence 987654
No 94
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.81 E-value=1.4e-20 Score=146.51 Aligned_cols=86 Identities=16% Similarity=0.359 Sum_probs=80.3
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeE--EEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCe----eecC
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKG--AKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGV----YCSS 278 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~--v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~----~i~g 278 (341)
....++|||+|||+++++++|+++|+ .||.|.. |+|++|+.+|++||||||+|.+. +|.+|++.|||. .|+|
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~-~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALA-PYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHG-GGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-HhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 45678999999999999999999996 9999977 99999998999999999999999 999999999999 9999
Q ss_pred ccEEEEecCCCCCC
Q 019392 279 RPMRIDVATPKKAS 292 (341)
Q Consensus 279 ~~i~v~~a~~k~~~ 292 (341)
+.|+|+++++++..
T Consensus 98 r~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 98 KTINVEFAKGSKRD 111 (131)
T ss_dssp CCCCCEECCCSCCC
T ss_pred EEEEEEECCCCCCC
Confidence 99999999887654
No 95
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.81 E-value=6.3e-20 Score=134.63 Aligned_cols=82 Identities=28% Similarity=0.498 Sum_probs=76.9
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~ 284 (341)
....++|||+|||+++++++|+++|+ .||.|.+|+|+.++. ++++|||||+|.+.++|.+|++.||+..|+|+.|+|+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~-~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFL-QAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHG-GGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHH-hcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 34567999999999999999999996 999999999999975 9999999999999999999999999999999999999
Q ss_pred ecCC
Q 019392 285 VATP 288 (341)
Q Consensus 285 ~a~~ 288 (341)
|++.
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 9864
No 96
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.81 E-value=2.8e-19 Score=137.91 Aligned_cols=87 Identities=28% Similarity=0.415 Sum_probs=81.0
Q ss_pred ccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEE
Q 019392 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (341)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v 283 (341)
.....++|||+|||+++++++|+++|+ .||.|.+|+|+.++ +|+++|||||+|.+.++|.+|++.|||..|+|+.|+|
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 108 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFA-EFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 108 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHH-TTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 345678999999999999999999996 99999999999997 8999999999999999999999999999999999999
Q ss_pred EecCCCCCC
Q 019392 284 DVATPKKAS 292 (341)
Q Consensus 284 ~~a~~k~~~ 292 (341)
+++.++...
T Consensus 109 ~~a~~~~~~ 117 (124)
T 2kt5_A 109 QLVASQIDL 117 (124)
T ss_dssp EEECCTTCC
T ss_pred EEeCCCCCC
Confidence 999887544
No 97
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.81 E-value=1.1e-19 Score=131.03 Aligned_cols=80 Identities=26% Similarity=0.466 Sum_probs=74.9
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~ 284 (341)
....++|||+|||+++++++|+++|+ .||.|.+|+|++++.+++++|||||+|.+.++|.+|+ .+++..|+|+.|+|+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFT-KFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL-DQKEHRLDGRVIDPK 85 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHT-TTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHH-HSSCEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHH-HhCCCEECCEEEEEE
Confidence 44678999999999999999999996 9999999999999999999999999999999999999 558899999999999
Q ss_pred ec
Q 019392 285 VA 286 (341)
Q Consensus 285 ~a 286 (341)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 98
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.81 E-value=1.1e-19 Score=132.53 Aligned_cols=85 Identities=27% Similarity=0.438 Sum_probs=78.8
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~ 284 (341)
....++|||+|||+++++++|+++|+ .||.|.+|+|.++ +++++|||||+|.+.++|.+|++.||+..|+|+.|+|+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~-~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 81 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFN-ECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVR 81 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHH-TTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34667999999999999999999997 9999999999984 78999999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 019392 285 VATPKKAS 292 (341)
Q Consensus 285 ~a~~k~~~ 292 (341)
+++++...
T Consensus 82 ~a~~~~~~ 89 (92)
T 2dgv_A 82 IDRNASGP 89 (92)
T ss_dssp ECSCCSSC
T ss_pred EcCCCCCC
Confidence 99887654
No 99
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.3e-19 Score=133.64 Aligned_cols=87 Identities=25% Similarity=0.348 Sum_probs=80.1
Q ss_pred ccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEE
Q 019392 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (341)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v 283 (341)
.....++|||+|||+++++++|+++|+ .||.|.+|+|+.++.+++++|||||+|.+.++|.+||+ ++..|+|+.|+|
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v 87 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFS-TFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDC 87 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHG-GGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHH-hcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEE
Confidence 345678999999999999999999996 99999999999999999999999999999999999997 578999999999
Q ss_pred EecCCCCCCC
Q 019392 284 DVATPKKASG 293 (341)
Q Consensus 284 ~~a~~k~~~~ 293 (341)
.|+.++....
T Consensus 88 ~~a~~~~~~~ 97 (103)
T 2cqg_A 88 KLPNSKQSQD 97 (103)
T ss_dssp ECCCTTCCCC
T ss_pred EecCCCCcCC
Confidence 9999987653
No 100
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=5.1e-20 Score=135.93 Aligned_cols=84 Identities=18% Similarity=0.253 Sum_probs=78.6
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~ 284 (341)
....++|||+|||+++++++|+++|+ .||.|.+++++.++.+++++|||||+|.+.++|.+||+.|||..|+|+.|+|+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~-~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFY-GYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTT-TSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-HcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34567999999999999999999996 99999999999998999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 019392 285 VATPK 289 (341)
Q Consensus 285 ~a~~k 289 (341)
++..+
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 98754
No 101
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=5.7e-20 Score=136.45 Aligned_cols=80 Identities=15% Similarity=0.136 Sum_probs=75.2
Q ss_pred CCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEe
Q 019392 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (341)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~ 285 (341)
...++|||+|||+++|+++|+++|+ .||.|.+|+|++|+. +.++|||||+|.+.++|.+||. +++..|+|+.|.|.+
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~-~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLE-DKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHH-TSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHh-hcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 3567999999999999999999997 999999999999977 9999999999999999999997 899999999999998
Q ss_pred cCC
Q 019392 286 ATP 288 (341)
Q Consensus 286 a~~ 288 (341)
+..
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 765
No 102
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.81 E-value=1.3e-19 Score=145.56 Aligned_cols=87 Identities=24% Similarity=0.315 Sum_probs=81.9
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~ 284 (341)
....++|||+|||+++++++|+++|+ .||.|.+|+|+.++.+++++|||||+|.+.++|.+||+.||+..|+|+.|+|+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFS-KSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34678999999999999999999996 99999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 019392 285 VATPKKAS 292 (341)
Q Consensus 285 ~a~~k~~~ 292 (341)
|++++...
T Consensus 115 ~a~~~~~~ 122 (156)
T 1h2v_Z 115 WDAGFKEG 122 (156)
T ss_dssp EESCCCTT
T ss_pred ECCCCCCc
Confidence 99887654
No 103
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.81 E-value=1.2e-19 Score=136.21 Aligned_cols=81 Identities=32% Similarity=0.479 Sum_probs=77.1
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~ 284 (341)
....++|||+|||+++++++|+++|+ .||.|.+|+|+.++ +++++|||||+|.+.++|.+||+.|||..|+|+.|+|+
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFA-EFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHH-TTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 45678999999999999999999996 99999999999997 89999999999999999999999999999999999999
Q ss_pred ecC
Q 019392 285 VAT 287 (341)
Q Consensus 285 ~a~ 287 (341)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 986
No 104
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.1e-19 Score=133.47 Aligned_cols=83 Identities=14% Similarity=0.197 Sum_probs=76.2
Q ss_pred CCCceEEeCCCCCCCCHHHHH----HHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccE
Q 019392 206 CSDLSIFVGDLAPDVTDSILQ----ETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281 (341)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~----~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i 281 (341)
...++|||+|||+++++++|+ ++|+ .||.|.+|+|++|+.+ +|||||+|.+.++|.+||+.|||..|+|+.|
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~-~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFA-RHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHH-HHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhcc-ccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 355799999999999999999 9996 9999999999998765 8999999999999999999999999999999
Q ss_pred EEEecCCCCCC
Q 019392 282 RIDVATPKKAS 292 (341)
Q Consensus 282 ~v~~a~~k~~~ 292 (341)
+|++++++...
T Consensus 83 ~V~~a~~~~~~ 93 (96)
T 2dgx_A 83 LVSLATGASGP 93 (96)
T ss_dssp EEEECCCSSCC
T ss_pred EEEEcCCCCCC
Confidence 99999876543
No 105
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=8.2e-20 Score=139.17 Aligned_cols=87 Identities=23% Similarity=0.397 Sum_probs=80.9
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~ 284 (341)
....++|||+|||+++++++|+++|+ .||.|.+|+|+.++.+++++|||||+|.+.++|.+||+. ++..|+|+.|+|.
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~ 101 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYE-QWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPK 101 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHT-SSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEE
Confidence 34567999999999999999999996 999999999999999999999999999999999999977 9999999999999
Q ss_pred ecCCCCCCC
Q 019392 285 VATPKKASG 293 (341)
Q Consensus 285 ~a~~k~~~~ 293 (341)
++.++....
T Consensus 102 ~a~~~~~~~ 110 (116)
T 1x4b_A 102 RAVAREESG 110 (116)
T ss_dssp CCSSCCCCC
T ss_pred ECCCCccCC
Confidence 999987653
No 106
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.81 E-value=8.4e-20 Score=141.27 Aligned_cols=88 Identities=23% Similarity=0.423 Sum_probs=82.3
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~ 284 (341)
....++|||+|||+++++++|+++|+ .||.|.+|.|+.++.++.++|||||+|.+.++|.+||+.|||..|+|+.|+|.
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFA-EYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHH-TTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 44567999999999999999999996 99999999999998899999999999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q 019392 285 VATPKKASG 293 (341)
Q Consensus 285 ~a~~k~~~~ 293 (341)
|+.++....
T Consensus 98 ~a~~~~~~~ 106 (126)
T 3ex7_B 98 WCFVRGPPK 106 (126)
T ss_dssp ESEESSSCC
T ss_pred EecCCCCCC
Confidence 998876553
No 107
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.81 E-value=3.2e-20 Score=137.47 Aligned_cols=83 Identities=27% Similarity=0.482 Sum_probs=75.6
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecC-CCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDS-NTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~-~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v 283 (341)
....++|||+|||+++++++|+++|+ .|| |.+|+|++++ .+|+++|||||+|.+.++|.+|| .|||..|+|+.|+|
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFR-GLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSC-SSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHH-hcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 44678999999999999999999996 999 9999999998 58999999999999999999999 99999999999999
Q ss_pred EecCCCC
Q 019392 284 DVATPKK 290 (341)
Q Consensus 284 ~~a~~k~ 290 (341)
++++++.
T Consensus 93 ~~a~~~~ 99 (100)
T 2j76_E 93 DVADQAQ 99 (100)
T ss_dssp EECCCSC
T ss_pred EeccCCC
Confidence 9998764
No 108
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.81 E-value=3.6e-20 Score=129.68 Aligned_cols=75 Identities=25% Similarity=0.435 Sum_probs=72.0
Q ss_pred eEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEec
Q 019392 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (341)
Q Consensus 210 ~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a 286 (341)
+|||+|||+++++++|+++|+ .||.|.+|+++.++.+++++|||||+|.+.++|++|++ ||+..|+|+.|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFE-QFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHH-TTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHH-hcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 599999999999999999997 99999999999998899999999999999999999996 9999999999999985
No 109
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.81 E-value=1.5e-20 Score=152.61 Aligned_cols=99 Identities=29% Similarity=0.555 Sum_probs=88.1
Q ss_pred CCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEec
Q 019392 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (341)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a 286 (341)
+.++|||+|||+++|+++|+++|+ .||.|.+|+|++++.+|+++|||||+|.+.++|.+|++. +..++|+.|.|.++
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFG-KYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRA 78 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHT-TTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccc
Confidence 457999999999999999999996 999999999999999999999999999999999999974 67899999999998
Q ss_pred CCCCCCCccccccchhhhcCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCC
Q 019392 287 TPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVR 340 (341)
Q Consensus 287 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t 340 (341)
.++... ...++|||+|||.++|
T Consensus 79 ~~~~~~--------------------------------~~~~~l~V~nlp~~~t 100 (167)
T 2cjk_A 79 IPRDEQ--------------------------------DKTGKIFVGGIGPDVR 100 (167)
T ss_dssp CCHHHH--------------------------------HHCEEEEEEEECTTCC
T ss_pred cchhhc--------------------------------cCCCeEEECCCCCCCC
Confidence 764322 1356899999999987
No 110
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.9e-20 Score=134.51 Aligned_cols=81 Identities=23% Similarity=0.432 Sum_probs=76.5
Q ss_pred CCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEe
Q 019392 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (341)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~ 285 (341)
.+.++|||+|||+++++++|+++|+ .||.|.+|+|+.++.+++++|||||+|.+.++|.+|++.|||..|+|+.|++++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQ-PYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTST-TTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 3567999999999999999999996 999999999999999999999999999999999999999999999999999887
Q ss_pred cC
Q 019392 286 AT 287 (341)
Q Consensus 286 a~ 287 (341)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 111
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.3e-19 Score=136.86 Aligned_cols=87 Identities=18% Similarity=0.284 Sum_probs=79.0
Q ss_pred cCCCceEEeCCCCCCCCHHHHH---HHhcccCCCeeEEEEEecCCCC---CCccEEEEEeCCHHHHHHHHHHhCCeeecC
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQ---ETFSSKYPSVKGAKVIIDSNTG---RTKGYGFVRFGDENERSRAMTEMNGVYCSS 278 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~---~~F~e~~G~v~~v~i~~~~~~~---~~~g~afV~F~~~~~A~~Al~~l~~~~i~g 278 (341)
....++|||+|||+++++++|+ ++|+ .||.|.+|+|++++.++ +++|||||+|.+.++|.+||+.|||..|+|
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~-~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFG-KFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTT-TTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhh-ccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 3456799999999999999999 9996 99999999999987654 566999999999999999999999999999
Q ss_pred ccEEEEecCCCCCC
Q 019392 279 RPMRIDVATPKKAS 292 (341)
Q Consensus 279 ~~i~v~~a~~k~~~ 292 (341)
+.|+|.|+.++...
T Consensus 91 r~l~V~~a~~k~~~ 104 (111)
T 2cpi_A 91 RTLKASLGTTKYCS 104 (111)
T ss_dssp EEEEEESCCCCSCS
T ss_pred EEEEEEeccccccc
Confidence 99999999998744
No 112
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.81 E-value=1.5e-19 Score=131.90 Aligned_cols=79 Identities=16% Similarity=0.206 Sum_probs=71.8
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCee--ecCccEE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY--CSSRPMR 282 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~--i~g~~i~ 282 (341)
..++++|||+|||+++|+++|+++|+ .||.|.+|++++ .||||||+|++.++|.+|++.|++.. |.|++|+
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~-~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQ-EFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHh-ccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 44678999999999999999999996 999999999884 46899999999999999999999865 7899999
Q ss_pred EEecCCCC
Q 019392 283 IDVATPKK 290 (341)
Q Consensus 283 v~~a~~k~ 290 (341)
|.|++++.
T Consensus 91 V~~S~~k~ 98 (100)
T 3r27_A 91 VNYSTSQK 98 (100)
T ss_dssp EEECSCSC
T ss_pred EEeccccc
Confidence 99998764
No 113
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.80 E-value=4.5e-20 Score=135.39 Aligned_cols=81 Identities=19% Similarity=0.283 Sum_probs=76.0
Q ss_pred CCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEec
Q 019392 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (341)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a 286 (341)
..++|||+|||+++++++|+++|+ .||.|.+++++.++.+++++|||||+|.+.++|.+||+.||+..|+|+.|+|+++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFY-GYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTT-TSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-hcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 457999999999999999999996 9999999999999899999999999999999999999999999999999999997
Q ss_pred CC
Q 019392 287 TP 288 (341)
Q Consensus 287 ~~ 288 (341)
.+
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 64
No 114
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.2e-19 Score=136.71 Aligned_cols=86 Identities=15% Similarity=0.279 Sum_probs=79.7
Q ss_pred CCCceEEeCCCCCCCCHHHHHHHhcccCCC-eeEEEEE-ecCCCCCCccEEEEEeCCHHHHHHHHHHhC--CeeecCccE
Q 019392 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPS-VKGAKVI-IDSNTGRTKGYGFVRFGDENERSRAMTEMN--GVYCSSRPM 281 (341)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~-v~~v~i~-~~~~~~~~~g~afV~F~~~~~A~~Al~~l~--~~~i~g~~i 281 (341)
...++|||+|||+++++++|+++|+ .||. |.+|.|+ .++.+++++|||||+|.+.++|.+|++.|| +..++|+.|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~-~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIA-KVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHH-HHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHH-HhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 3567999999999999999999996 9998 9999998 888889999999999999999999999996 589999999
Q ss_pred EEEecCCCCCC
Q 019392 282 RIDVATPKKAS 292 (341)
Q Consensus 282 ~v~~a~~k~~~ 292 (341)
+|.|++++...
T Consensus 85 ~V~~a~~~~~~ 95 (109)
T 2dis_A 85 AVDWAEPEIDV 95 (109)
T ss_dssp EEEESCSSCST
T ss_pred EEEEcCCCCCc
Confidence 99999988754
No 115
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.80 E-value=5.5e-19 Score=155.90 Aligned_cols=82 Identities=22% Similarity=0.406 Sum_probs=75.6
Q ss_pred cCCCceEEeCCCCCCCCHHHHH----HHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCcc
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQ----ETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP 280 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~----~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~ 280 (341)
..+.++|||+|||+++++++|+ ++|+ .||.|.+|+|++ +++++|||||+|.+.++|.+||+.|||..|.|+.
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~-~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFS-QFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHh-ccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 4567899999999999999977 8996 999999999885 6889999999999999999999999999999999
Q ss_pred EEEEecCCCC
Q 019392 281 MRIDVATPKK 290 (341)
Q Consensus 281 i~v~~a~~k~ 290 (341)
|+|.|++.+.
T Consensus 82 l~v~~a~~~~ 91 (282)
T 3pgw_A 82 MRIQYAKTDS 91 (282)
T ss_pred EEEEEeccCc
Confidence 9999997765
No 116
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.80 E-value=1.2e-19 Score=127.62 Aligned_cols=73 Identities=8% Similarity=0.206 Sum_probs=68.8
Q ss_pred CceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEecC
Q 019392 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVAT 287 (341)
Q Consensus 208 ~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a~ 287 (341)
+.-|||+||++.+||++|+++|. +||+|.++++.. +||||||+|.+.++|++|++.||+..++|+.|+|++|.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~-q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCM-QHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHH-HHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHH-hhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 45799999999999999999997 999999999864 68999999999999999999999999999999999984
No 117
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.2e-19 Score=134.32 Aligned_cols=85 Identities=20% Similarity=0.425 Sum_probs=77.4
Q ss_pred ccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEE
Q 019392 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (341)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v 283 (341)
.....++|||+|||+++++++|+++|+ .||.|.+|+|..+ +.++|||||+|.+.++|.+||+.||+..|+|+.|+|
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 93 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFY-KYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRV 93 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 344678999999999999999999996 9999999999654 568999999999999999999999999999999999
Q ss_pred EecCCCCCC
Q 019392 284 DVATPKKAS 292 (341)
Q Consensus 284 ~~a~~k~~~ 292 (341)
+|++++...
T Consensus 94 ~~a~~~~~~ 102 (109)
T 1x4a_A 94 EFPRSGRGT 102 (109)
T ss_dssp ECCCCCCCC
T ss_pred EEcccCCCC
Confidence 999987655
No 118
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.80 E-value=5e-19 Score=151.36 Aligned_cols=79 Identities=27% Similarity=0.468 Sum_probs=73.7
Q ss_pred cCCCceEEeCCCCC-CCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEE
Q 019392 205 ACSDLSIFVGDLAP-DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (341)
Q Consensus 205 ~~~~~~l~v~nlp~-~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v 283 (341)
..+.++|||+|||+ ++++++|+++|+ .||.|.+|+|++++ +|||||+|.+.++|.+|++.|||..|.|+.|+|
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~-~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v 104 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFG-VYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 104 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHH-HHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHH-hCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 44678999999999 999999999996 99999999999874 789999999999999999999999999999999
Q ss_pred EecCCC
Q 019392 284 DVATPK 289 (341)
Q Consensus 284 ~~a~~k 289 (341)
.++..+
T Consensus 105 ~~a~~~ 110 (229)
T 2adc_A 105 TLSKHQ 110 (229)
T ss_dssp ECCSCC
T ss_pred EEecCc
Confidence 999866
No 119
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.6e-19 Score=130.74 Aligned_cols=84 Identities=12% Similarity=0.158 Sum_probs=74.4
Q ss_pred cccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHh--CCeeecCcc
Q 019392 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEM--NGVYCSSRP 280 (341)
Q Consensus 203 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l--~~~~i~g~~ 280 (341)
....+.++|||+|||+++++++|+++|+ .||.|.+|+|+++ ||||||+|++.++|.+|++.| ++..+.|+.
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~-~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 82 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGL-PFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQP 82 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTT-TTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcE
Confidence 3445678999999999999999999996 9999999998854 789999999999999999987 467899999
Q ss_pred EEEEecCCCCCCC
Q 019392 281 MRIDVATPKKASG 293 (341)
Q Consensus 281 i~v~~a~~k~~~~ 293 (341)
|+|.|++++....
T Consensus 83 l~V~~a~~~~~~~ 95 (101)
T 2cq1_A 83 IYIQYSNHKELKT 95 (101)
T ss_dssp CEEEECSCSSCCC
T ss_pred EEEEEcCcccCcC
Confidence 9999999876553
No 120
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.8e-19 Score=135.22 Aligned_cols=82 Identities=15% Similarity=0.193 Sum_probs=74.0
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCC--eeecCccEE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG--VYCSSRPMR 282 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~--~~i~g~~i~ 282 (341)
..+.++|||+|||+++++++|+++|+ .||.|.+|+|+++ ||||||+|++.++|.+|++.|++ ..|.|+.|+
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~-~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGL-PFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHT-TTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 44678999999999999999999996 9999999999875 68999999999999999999874 689999999
Q ss_pred EEecCCCCCCC
Q 019392 283 IDVATPKKASG 293 (341)
Q Consensus 283 v~~a~~k~~~~ 293 (341)
|.|++++....
T Consensus 101 V~~a~~k~~~~ 111 (119)
T 2ad9_A 101 IQFSNHKELKT 111 (119)
T ss_dssp EEECSSSSCCC
T ss_pred EEEccCCCCCc
Confidence 99998876553
No 121
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.7e-19 Score=135.74 Aligned_cols=85 Identities=20% Similarity=0.447 Sum_probs=77.8
Q ss_pred cccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEE
Q 019392 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (341)
Q Consensus 203 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~ 282 (341)
......++|||+|||.++++++|+++|+ .||.|.+|+|++++ +.++|||||+|.+.++|.+|++.|||..|+|+.|+
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 100 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFG-QFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 100 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGG-GTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHH-hcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3455678999999999999999999996 99999999999884 35899999999999999999999999999999999
Q ss_pred EEecCCCC
Q 019392 283 IDVATPKK 290 (341)
Q Consensus 283 v~~a~~k~ 290 (341)
|++++++.
T Consensus 101 V~~a~~~~ 108 (109)
T 2err_A 101 VNNATARV 108 (109)
T ss_dssp EEECCCSC
T ss_pred EEECCCCc
Confidence 99998763
No 122
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5.8e-19 Score=134.00 Aligned_cols=83 Identities=17% Similarity=0.451 Sum_probs=77.3
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeee--------
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC-------- 276 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i-------- 276 (341)
....++|||+|||+++++++|+++|+ .||.|.+|+|++++ ++.++|||||+|.+.++|.+||+.|||..|
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLK-PFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTT-TTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 44668999999999999999999996 99999999999997 899999999999999999999999999999
Q ss_pred cCccEEEEecCCC
Q 019392 277 SSRPMRIDVATPK 289 (341)
Q Consensus 277 ~g~~i~v~~a~~k 289 (341)
.++.|.|+|+.++
T Consensus 100 ~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 100 PTEPLLCKFSGPS 112 (114)
T ss_dssp CSSCBEEEECCCS
T ss_pred CCCceeEEccCCC
Confidence 5788999999865
No 123
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=7.1e-20 Score=139.06 Aligned_cols=83 Identities=23% Similarity=0.390 Sum_probs=78.6
Q ss_pred CCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEec
Q 019392 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (341)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a 286 (341)
..++|||+|||+++++++|+++|+ .||.|.+|+|+.++.+++++|||||+|.+.++|.+|| .||+..|+|+.|+|.++
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFS-AVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHT-TTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-hCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 457999999999999999999996 9999999999999999999999999999999999999 99999999999999999
Q ss_pred CCCCC
Q 019392 287 TPKKA 291 (341)
Q Consensus 287 ~~k~~ 291 (341)
.++..
T Consensus 102 ~~~~~ 106 (114)
T 2cq4_A 102 QAEKN 106 (114)
T ss_dssp HHHHH
T ss_pred CCCcc
Confidence 87653
No 124
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.80 E-value=1.9e-19 Score=135.38 Aligned_cols=82 Identities=18% Similarity=0.188 Sum_probs=76.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcccc
Q 019392 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (341)
Q Consensus 113 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (341)
.+.++|||+||++++|+++|+++|+.||.|.+|+|+.|+.+|+++|||||+|.+.++|.+|++.|||..+ .++.|+|.
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~--~gr~i~V~ 81 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSV--MGNIIHAQ 81 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEE--CCeEEEEE
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999 67788888
Q ss_pred cccc
Q 019392 193 WATF 196 (341)
Q Consensus 193 ~~~~ 196 (341)
++..
T Consensus 82 ~a~~ 85 (110)
T 3s8s_A 82 LDIK 85 (110)
T ss_dssp ECST
T ss_pred ECCC
Confidence 7753
No 125
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=6e-20 Score=129.21 Aligned_cols=76 Identities=29% Similarity=0.465 Sum_probs=73.2
Q ss_pred ceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEec
Q 019392 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (341)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a 286 (341)
++|||+|||+++++++|+++|+ .||.|.+|+++.++.+++++|||||+|.+.++|.+|++.++ ..++|+.|+|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~-~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFG-QFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHT-TTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 4799999999999999999996 99999999999999899999999999999999999999999 9999999999987
No 126
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.80 E-value=2.8e-19 Score=137.91 Aligned_cols=84 Identities=21% Similarity=0.413 Sum_probs=79.0
Q ss_pred CCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEec
Q 019392 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (341)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a 286 (341)
..++|||+|||+++++++|+++|+ .||.|.+|+|++++.+++++|||||+|.+.++|.+|| .|||..|+|+.|+|.|+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFS-SCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHH-TTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 467999999999999999999996 9999999999999989999999999999999999999 89999999999999999
Q ss_pred CCCCCC
Q 019392 287 TPKKAS 292 (341)
Q Consensus 287 ~~k~~~ 292 (341)
++....
T Consensus 113 ~~~~~~ 118 (124)
T 2jwn_A 113 RTNMPG 118 (124)
T ss_dssp SCCCSS
T ss_pred CCCCCC
Confidence 876543
No 127
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.80 E-value=4.3e-19 Score=135.61 Aligned_cols=84 Identities=24% Similarity=0.355 Sum_probs=77.3
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCC
Q 019392 109 NFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188 (341)
Q Consensus 109 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~ 188 (341)
.....+.++|||+|||+++++++|+++|+.||.|.+|+++.++.+|+++|||||+|.+.++|++|++.|++..+ .++.
T Consensus 34 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~ 111 (118)
T 2khc_A 34 QIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQV--GTKR 111 (118)
T ss_dssp SCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEE--TTEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEE--CCEE
Confidence 34566789999999999999999999999999999999999998999999999999999999999999999999 5677
Q ss_pred cccccc
Q 019392 189 FRLNWA 194 (341)
Q Consensus 189 ~~~~~~ 194 (341)
++|.|+
T Consensus 112 l~V~~a 117 (118)
T 2khc_A 112 LKVQLK 117 (118)
T ss_dssp CCEEEC
T ss_pred EEEEec
Confidence 777775
No 128
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.79 E-value=7.9e-19 Score=133.48 Aligned_cols=92 Identities=26% Similarity=0.533 Sum_probs=82.8
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCC
Q 019392 107 NNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186 (341)
Q Consensus 107 ~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~ 186 (341)
.......+.++|||+|||+++|+++|+++|+.||.|.+|+|+.++.++.++|||||+|.+.++|.+|++.|++..| .+
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g 84 (115)
T 2dgo_A 7 GQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL--GG 84 (115)
T ss_dssp SSCCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEE--TT
T ss_pred cCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE--CC
Confidence 3344567889999999999999999999999999999999999988999999999999999999999999999999 67
Q ss_pred CCcccccccccCCC
Q 019392 187 QPFRLNWATFSGSD 200 (341)
Q Consensus 187 ~~~~~~~~~~~~~~ 200 (341)
+.|+|.|+......
T Consensus 85 ~~l~V~~a~~~~~~ 98 (115)
T 2dgo_A 85 RQIRTNWATRKPPA 98 (115)
T ss_dssp EECEEEESSCCCCC
T ss_pred EEEEEEEccCCCCC
Confidence 88999988765443
No 129
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.79 E-value=2.6e-20 Score=135.29 Aligned_cols=82 Identities=33% Similarity=0.564 Sum_probs=74.0
Q ss_pred ceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEecCC
Q 019392 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (341)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a~~ 288 (341)
++|||+|||.++++++|+++|+ .||.|.+|+|++++.+++++|||||+|.+.+ |.+|++.|||..++|+.|+|++|.+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFS-QFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHH-HHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECCCCCCCCHHHHHHHHH-hcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 4899999999999999999997 9999999999999999999999999999999 9999999999999999999999988
Q ss_pred CCCC
Q 019392 289 KKAS 292 (341)
Q Consensus 289 k~~~ 292 (341)
+...
T Consensus 80 ~~~~ 83 (90)
T 2ki2_A 80 KKSL 83 (90)
T ss_dssp ----
T ss_pred CCCC
Confidence 7544
No 130
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2e-19 Score=133.46 Aligned_cols=84 Identities=17% Similarity=0.214 Sum_probs=76.0
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~ 284 (341)
....++|||+|||+++|+++|+++|+ .||. .+|+|++|+ +++++|||||+|++.++|++|| .+|+..|+||.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFS-PLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELF 87 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSC-SCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-HcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEE
Confidence 34567999999999999999999996 9995 599999997 8999999999999999999999 579999999999999
Q ss_pred ecCCCCCC
Q 019392 285 VATPKKAS 292 (341)
Q Consensus 285 ~a~~k~~~ 292 (341)
++.+....
T Consensus 88 ~~~~~~~~ 95 (102)
T 1wez_A 88 LNSTAGTS 95 (102)
T ss_dssp EECCCCCC
T ss_pred ECCCCCCC
Confidence 98876543
No 131
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.79 E-value=5.4e-19 Score=147.68 Aligned_cols=127 Identities=20% Similarity=0.264 Sum_probs=90.5
Q ss_pred CceEEeCCCCC-CCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEec
Q 019392 208 DLSIFVGDLAP-DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (341)
Q Consensus 208 ~~~l~v~nlp~-~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a 286 (341)
.++|||+|||+ ++++++|+++|+ .||.|.+|+|++++ +|||||+|.+.++|.+|++.|||..+.|+.|+|.++
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~-~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFG-VYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHH-TTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHH-hcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 57999999999 999999999996 99999999998764 789999999999999999999999999999999999
Q ss_pred CCCCCCCcccc--ccchhhhcCCCCC-CCCCCCCCCCCCCCCCCCeEEEcCCCCCCC
Q 019392 287 TPKKASGYQQQ--YSSQALVLAGGPG-SNGARVQGSQSDGESNNATIFVGALDSDVR 340 (341)
Q Consensus 287 ~~k~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t 340 (341)
..+........ .........+... ................+++|||+|||.++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ 133 (198)
T 1qm9_A 77 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVS 133 (198)
T ss_dssp CCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCC
T ss_pred cCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCC
Confidence 87632211000 0000000000000 000011111122235689999999999987
No 132
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=5.5e-19 Score=131.35 Aligned_cols=86 Identities=30% Similarity=0.526 Sum_probs=78.2
Q ss_pred ccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEE
Q 019392 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (341)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v 283 (341)
.....++|||+|||+++++++|+++|+ .| .+|+++.++.+++++|||||+|.+.++|.+||+.||+..|+|+.|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFD-GS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTST-TC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhc-CC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 345678999999999999999999996 76 47888999889999999999999999999999999999999999999
Q ss_pred EecCCCCCCC
Q 019392 284 DVATPKKASG 293 (341)
Q Consensus 284 ~~a~~k~~~~ 293 (341)
+|++++....
T Consensus 87 ~~a~~~~~~~ 96 (102)
T 2fc8_A 87 DWAKPKGEGG 96 (102)
T ss_dssp EECCCCCSSS
T ss_pred EEecCCCCCC
Confidence 9999887653
No 133
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=8.4e-19 Score=131.06 Aligned_cols=87 Identities=30% Similarity=0.508 Sum_probs=80.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCc
Q 019392 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (341)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~ 189 (341)
......++|||+|||+++|+++|+++|+.||.|.+|+++.++.++.++|||||+|.+.++|.+|++.|++..| .++.+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l 87 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKL--YGKPI 87 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBC--SSCBC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeE--CCeEE
Confidence 3456789999999999999999999999999999999999998999999999999999999999999999999 67888
Q ss_pred ccccccccC
Q 019392 190 RLNWATFSG 198 (341)
Q Consensus 190 ~~~~~~~~~ 198 (341)
++.|+....
T Consensus 88 ~v~~a~~~~ 96 (105)
T 1x5u_A 88 RVNKASAHN 96 (105)
T ss_dssp EEEETTTTS
T ss_pred EEEECCCCC
Confidence 998887654
No 134
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.3e-19 Score=132.36 Aligned_cols=85 Identities=18% Similarity=0.235 Sum_probs=77.5
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeE-EEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKG-AKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~-v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v 283 (341)
....++|||+|||+++++++|+++|+ .||.|.+ |+|+++ .+|+++|||||+|.+.++|.+||+. |+..|+||.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v 88 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFS-GLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEI 88 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTT-TCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEE
Confidence 34567999999999999999999996 9999998 888888 7899999999999999999999977 999999999999
Q ss_pred EecCCCCCC
Q 019392 284 DVATPKKAS 292 (341)
Q Consensus 284 ~~a~~k~~~ 292 (341)
.++.++...
T Consensus 89 ~~~~~~~~~ 97 (104)
T 1wg5_A 89 FKSSRAEVR 97 (104)
T ss_dssp EEECTTTSC
T ss_pred EECCHHHHH
Confidence 998876543
No 135
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.5e-19 Score=137.16 Aligned_cols=83 Identities=14% Similarity=0.266 Sum_probs=77.4
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCe-eEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSV-KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v-~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v 283 (341)
....++|||+|||+++++++|+++|+ .||.| .+|+|++|+ +++++|||||+|.+.++|.+||+. |+..|+|+.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~-~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLE-GIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTT-TSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHH-hCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 44668999999999999999999996 99999 899999997 899999999999999999999976 999999999999
Q ss_pred EecCCCC
Q 019392 284 DVATPKK 290 (341)
Q Consensus 284 ~~a~~k~ 290 (341)
.++.++.
T Consensus 89 ~~a~~~~ 95 (114)
T 2cpy_A 89 HVVTLED 95 (114)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9998765
No 136
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=5.6e-19 Score=131.11 Aligned_cols=81 Identities=17% Similarity=0.229 Sum_probs=72.4
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCC--eeecCccEE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG--VYCSSRPMR 282 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~--~~i~g~~i~ 282 (341)
..+.++|||+|||+++++++|+++|+ .||.|.+|+|+++ ||||||+|++.++|.+|++.|++ ..|+|+.|+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~-~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~ 84 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALE-KFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAF 84 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHT-TTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 44678999999999999999999996 9999999998753 68999999999999999998875 459999999
Q ss_pred EEecCCCCCC
Q 019392 283 IDVATPKKAS 292 (341)
Q Consensus 283 v~~a~~k~~~ 292 (341)
|.|++.+...
T Consensus 85 V~~a~~~~~~ 94 (104)
T 1wex_A 85 FNYSTSKRIT 94 (104)
T ss_dssp EEECSSSSCC
T ss_pred EEEccCcccc
Confidence 9999887654
No 137
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.79 E-value=1.6e-18 Score=129.59 Aligned_cols=89 Identities=20% Similarity=0.328 Sum_probs=79.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCC-CCCC
Q 019392 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPN-TDQP 188 (341)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~-~~~~ 188 (341)
......++|||+|||+++++++|+++|+.||.|.+|+|+.++ +|.++|||||+|.+.++|.+|++.|++..+.+ ..+.
T Consensus 10 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~ 88 (105)
T 2dnh_A 10 SRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSS 88 (105)
T ss_dssp CSCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCcc
Confidence 345678999999999999999999999999999999999998 79999999999999999999999999998843 2288
Q ss_pred cccccccccCC
Q 019392 189 FRLNWATFSGS 199 (341)
Q Consensus 189 ~~~~~~~~~~~ 199 (341)
++|.|+.....
T Consensus 89 l~V~~a~~~~~ 99 (105)
T 2dnh_A 89 LVVKFADTDKE 99 (105)
T ss_dssp CEEEESCSSCC
T ss_pred EEEEECccCcc
Confidence 99999876543
No 138
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.79 E-value=1.3e-19 Score=141.03 Aligned_cols=83 Identities=17% Similarity=0.226 Sum_probs=76.8
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCC---eeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPS---VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~---v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i 281 (341)
....++|||+|||+++|+++|+++|+ .||. |.+|+|++|+. |+++|||||+|++.++|++||+ ||+..|+||.|
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~-~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLS-DCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTT-TCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-HhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 34567999999999999999999996 9999 89999999977 9999999999999999999998 99999999999
Q ss_pred EEEecCCCC
Q 019392 282 RIDVATPKK 290 (341)
Q Consensus 282 ~v~~a~~k~ 290 (341)
+|.++.++.
T Consensus 118 ~V~~a~~~e 126 (136)
T 2hgl_A 118 EVFKSHRTE 126 (136)
T ss_dssp EEEECCHHH
T ss_pred EEEECChHH
Confidence 999987653
No 139
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.79 E-value=3.1e-19 Score=133.39 Aligned_cols=83 Identities=19% Similarity=0.334 Sum_probs=75.9
Q ss_pred cCCCceEEeCCCCCCC------CHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecC
Q 019392 205 ACSDLSIFVGDLAPDV------TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSS 278 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~------t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g 278 (341)
....++|||+|||+.+ ++++|+++|+ .||.|.+|+|+ +.+|+++|||||+|.+.++|.+||+.|||..|+|
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~-~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFS-KFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHG-GGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHh-cCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 3456799999999999 7899999997 99999999988 3689999999999999999999999999999999
Q ss_pred c-cEEEEecCCCC
Q 019392 279 R-PMRIDVATPKK 290 (341)
Q Consensus 279 ~-~i~v~~a~~k~ 290 (341)
+ .|+|.++....
T Consensus 89 ~~~l~V~~a~~~~ 101 (105)
T 2nlw_A 89 QHTFRVNLFTDFD 101 (105)
T ss_dssp TCEEEEECSCCCC
T ss_pred CceEEEEEcchHh
Confidence 9 99999998654
No 140
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.79 E-value=4.9e-19 Score=139.50 Aligned_cols=83 Identities=25% Similarity=0.505 Sum_probs=77.7
Q ss_pred cccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEE
Q 019392 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (341)
Q Consensus 203 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~ 282 (341)
......++|||+|||+++++++|+++|+ .||.|.+|+|++++.+++++|||||+|.+.++|.+|++.|||..|+|+.|+
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 136 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFI-PFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 136 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHG-GGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHH-hcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3445678999999999999999999996 999999999999999999999999999999999999999999999999999
Q ss_pred EEec
Q 019392 283 IDVA 286 (341)
Q Consensus 283 v~~a 286 (341)
|+||
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9986
No 141
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.79 E-value=9.2e-19 Score=130.36 Aligned_cols=80 Identities=30% Similarity=0.508 Sum_probs=73.3
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~ 284 (341)
....++|||+|||+++++++|+++|+ .||.|.+|+|+ +|||||+|.+.++|.+||+.||+..|.|+.|+|.
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~-~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 78 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFS-QFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIV 78 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHH-HHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEE
Confidence 34568999999999999999999996 99999999987 3599999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q 019392 285 VATPKKASG 293 (341)
Q Consensus 285 ~a~~k~~~~ 293 (341)
|++++....
T Consensus 79 ~a~~~~~~~ 87 (103)
T 2dgu_A 79 FAKPPDQKR 87 (103)
T ss_dssp ECCCCCCCC
T ss_pred EcCCCcccc
Confidence 999887654
No 142
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.79 E-value=6.2e-20 Score=143.32 Aligned_cols=125 Identities=14% Similarity=0.126 Sum_probs=75.5
Q ss_pred ceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcccccccccCCCCccccCCCceEEeCCCCCCCCHHHHHHHhcccCCCee
Q 019392 158 GYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVK 237 (341)
Q Consensus 158 g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~ 237 (341)
++||.+|.-++.+..++..+... ..+... .-. .............++|||+|||+++|+++|+++|+ .|| |.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~--g~~---~g~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~-~~G-i~ 73 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASM-TGGQQM--GRG---SGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFS-PLN-PV 73 (139)
T ss_dssp -------------------------------------------------CCCCEECCSCCTTCCHHHHHHHHC-SCC-CS
T ss_pred CcccccccCccccchhcccchhc-cCCCCC--CCC---CCCcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHH-hcC-Ce
Confidence 57888888887777766554432 211111 000 00011112334567999999999999999999996 999 77
Q ss_pred EEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEecCCCCCC
Q 019392 238 GAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292 (341)
Q Consensus 238 ~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a~~k~~~ 292 (341)
+|+|++|+. ++++|||||+|++.++|++|| .+|+..|+||.|+|.++.++...
T Consensus 74 ~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~~~ 126 (139)
T 2hgn_A 74 RVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTGAS 126 (139)
T ss_dssp EEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSCC-
T ss_pred EEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCCCC
Confidence 999999976 999999999999999999999 88999999999999998887544
No 143
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=6.8e-19 Score=130.60 Aligned_cols=84 Identities=24% Similarity=0.447 Sum_probs=75.9
Q ss_pred ccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEE
Q 019392 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (341)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v 283 (341)
.....++|||+|||+++++++|+++|+ .||.| +++.+ .+++++|||||+|.+.++|.+||+.||+..|.|+.|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 85 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFE-KATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 85 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCS-SCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEE
Confidence 345678999999999999999999996 99976 56666 67999999999999999999999999999999999999
Q ss_pred EecCCCCCC
Q 019392 284 DVATPKKAS 292 (341)
Q Consensus 284 ~~a~~k~~~ 292 (341)
.|++++...
T Consensus 86 ~~a~~~~~~ 94 (101)
T 2fc9_A 86 ELQGPRGSP 94 (101)
T ss_dssp EECSSCCCC
T ss_pred EEcCCCCCC
Confidence 999988654
No 144
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.79 E-value=1.9e-19 Score=137.40 Aligned_cols=83 Identities=17% Similarity=0.196 Sum_probs=76.8
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCC---eeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPS---VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~---v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i 281 (341)
....++|||+|||+++|+++|+++|+ .||. |.+|+|++++. |+++|||||+|.+.++|++||+ ||+..|+|+.|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i 90 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLS-DCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYI 90 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTT-TSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHH-HcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEE
Confidence 34567999999999999999999996 9999 89999999976 9999999999999999999997 99999999999
Q ss_pred EEEecCCCC
Q 019392 282 RIDVATPKK 290 (341)
Q Consensus 282 ~v~~a~~k~ 290 (341)
+|.++.++.
T Consensus 91 ~V~~a~~~~ 99 (118)
T 2db1_A 91 EVFKSHRTE 99 (118)
T ss_dssp EEEEECHHH
T ss_pred EEEECCHHH
Confidence 999987654
No 145
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.79 E-value=5.1e-20 Score=150.80 Aligned_cols=103 Identities=17% Similarity=0.410 Sum_probs=88.1
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~ 284 (341)
....++|||+|||+++++++|+++|+ .||.+.. .++.+..+++++|||||+|.+.++|.+|+ .|||..|.|+.|+|.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~-~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAIS-ELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLE 86 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHH-HHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHH-HhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEe
Confidence 45678999999999999999999996 9998776 34445567899999999999999999999 599999999999999
Q ss_pred ecCCCCCCCccccccchhhhcCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCC
Q 019392 285 VATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVR 340 (341)
Q Consensus 285 ~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t 340 (341)
++.++.... ....++|||+|||.++|
T Consensus 87 ~~~~~~~~~------------------------------~~~~~~l~v~nlp~~~t 112 (175)
T 1fje_B 87 KPKGRDSKK------------------------------VRAARTLLAKNLSFNIT 112 (175)
T ss_dssp CCCCSSCST------------------------------TGGGGEEEEESCCSSCC
T ss_pred cCCCccccc------------------------------cccCCEEEEeCCCCCCC
Confidence 998764331 12467999999999987
No 146
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=2.6e-19 Score=131.93 Aligned_cols=81 Identities=9% Similarity=0.150 Sum_probs=72.7
Q ss_pred cCCCceEEeCCCCC-CCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCC--eeecCccE
Q 019392 205 ACSDLSIFVGDLAP-DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG--VYCSSRPM 281 (341)
Q Consensus 205 ~~~~~~l~v~nlp~-~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~--~~i~g~~i 281 (341)
..+.++|||+|||+ ++++++|+++|+ .||.|.+|+|+++ +|||||+|++.++|.+|++.||+ ..|.|++|
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~-~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVE-PFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTG-GGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHH-hcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 44678999999999 999999999996 9999999999865 47999999999999999999986 45999999
Q ss_pred EEEecCCCCCC
Q 019392 282 RIDVATPKKAS 292 (341)
Q Consensus 282 ~v~~a~~k~~~ 292 (341)
+|.|++.+...
T Consensus 85 ~V~~a~~~~~~ 95 (102)
T 1x4d_A 85 RVHLSQKYKRI 95 (102)
T ss_dssp EEEEECCCTTS
T ss_pred EEEECCCCCCC
Confidence 99999976654
No 147
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.78 E-value=8.7e-20 Score=132.53 Aligned_cols=82 Identities=22% Similarity=0.341 Sum_probs=74.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcC-CcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhC-CCCCCCCCCCcccc
Q 019392 115 TKTIWIGDLFHWMDETFLHNCFSHTG-QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYS-GSLMPNTDQPFRLN 192 (341)
Q Consensus 115 ~~~l~v~nLp~~~te~~l~~~f~~~G-~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~-~~~~~~~~~~~~~~ 192 (341)
+++|||+|||+++||++|+++|+.|| .|.+|+|++|+.+|.++|||||+|.+.++|.+|++.++ +..+ .++.++|.
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~--~gr~i~V~ 78 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNI--LGQKVSMH 78 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEE--TTEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEE--CCEEEEEE
Confidence 46899999999999999999999999 89999999999999999999999999999999998774 4567 67889999
Q ss_pred cccccC
Q 019392 193 WATFSG 198 (341)
Q Consensus 193 ~~~~~~ 198 (341)
|+....
T Consensus 79 ~a~~~~ 84 (91)
T 2lxi_A 79 YSDPKP 84 (91)
T ss_dssp CCCSCC
T ss_pred EcCCCC
Confidence 987543
No 148
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6.9e-19 Score=131.05 Aligned_cols=88 Identities=28% Similarity=0.424 Sum_probs=80.9
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCC
Q 019392 109 NFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188 (341)
Q Consensus 109 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~ 188 (341)
.....+.++|||+|||+++++++|+++|+.||.|.+|+++.++.++.++|||||+|.+.++|.+|++.|++..| .++.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~ 86 (103)
T 2cq0_A 9 NRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGY--DHLI 86 (103)
T ss_dssp CCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEE--TTEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCee--CCcE
Confidence 34567889999999999999999999999999999999999998999999999999999999999999999999 6788
Q ss_pred cccccccccC
Q 019392 189 FRLNWATFSG 198 (341)
Q Consensus 189 ~~~~~~~~~~ 198 (341)
|+|.|+....
T Consensus 87 l~v~~a~~~~ 96 (103)
T 2cq0_A 87 LNVEWAKPST 96 (103)
T ss_dssp CEEEESSCCC
T ss_pred EEEEECCCCC
Confidence 8988887553
No 149
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.3e-18 Score=129.26 Aligned_cols=87 Identities=25% Similarity=0.455 Sum_probs=80.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcc
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (341)
...+.++|||+|||+++|+++|+++|+.||.|.+|+++.++.++.++|||||+|.+.++|.+|++.|++..| .++.|+
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~ 85 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV--DGRQIR 85 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCT--TSCCCE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE--CCeEEE
Confidence 446789999999999999999999999999999999999998999999999999999999999999999999 678889
Q ss_pred cccccccCC
Q 019392 191 LNWATFSGS 199 (341)
Q Consensus 191 ~~~~~~~~~ 199 (341)
|.|+.....
T Consensus 86 v~~a~~~~~ 94 (102)
T 1x5s_A 86 VDQAGKSSD 94 (102)
T ss_dssp EEEEECCCC
T ss_pred EEECCCCCC
Confidence 988876543
No 150
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=2e-18 Score=129.48 Aligned_cols=89 Identities=20% Similarity=0.403 Sum_probs=80.7
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEec-CCCCCccceEEEEecCHHHHHHHHHHh-CCCCCCCCC
Q 019392 109 NFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRN-KQTGQSEGYGFVEFYSRAAAEKVLQSY-SGSLMPNTD 186 (341)
Q Consensus 109 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~-~~~g~~~g~afV~f~~~~~A~~Al~~l-~~~~~~~~~ 186 (341)
.......++|||+|||+++|+++|+++|+.||.|.+|+++.+ +.++.++|||||+|.+.++|.+|++.| ++..| .+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~--~g 86 (107)
T 2cph_A 9 VPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHL--YG 86 (107)
T ss_dssp SCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBS--SS
T ss_pred cccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeE--CC
Confidence 345578899999999999999999999999999999999999 788999999999999999999999999 99999 57
Q ss_pred CCcccccccccCC
Q 019392 187 QPFRLNWATFSGS 199 (341)
Q Consensus 187 ~~~~~~~~~~~~~ 199 (341)
+.++|.|+.....
T Consensus 87 ~~l~v~~a~~~~~ 99 (107)
T 2cph_A 87 RRLVLEWADSEVT 99 (107)
T ss_dssp CBCEEEECCCCCC
T ss_pred CEEEEEeCCCCCC
Confidence 7889988876543
No 151
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.3e-18 Score=128.13 Aligned_cols=79 Identities=18% Similarity=0.427 Sum_probs=72.9
Q ss_pred CCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeec--CccEEE
Q 019392 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS--SRPMRI 283 (341)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~--g~~i~v 283 (341)
.+.++|||+|||+++++++|+++|+ .||.|.+|.+..+ +|||||+|.+.++|.+|++.||+..|. |+.|+|
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFD-RFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHH-TTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 4567999999999999999999996 9999999998753 689999999999999999999999999 999999
Q ss_pred EecCCCCC
Q 019392 284 DVATPKKA 291 (341)
Q Consensus 284 ~~a~~k~~ 291 (341)
+|++++..
T Consensus 88 ~~a~~~~~ 95 (97)
T 1why_A 88 DFAKSGPS 95 (97)
T ss_dssp EECCCCCC
T ss_pred EECCCCCC
Confidence 99998754
No 152
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.2e-18 Score=126.37 Aligned_cols=79 Identities=20% Similarity=0.451 Sum_probs=73.5
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~ 284 (341)
....++|||+|||+++++++|+++|+ .||.|.+|+|. +|||||+|.+.++|.+|++.||+..|+|+.|+|+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFE-QYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHH-TSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 34678999999999999999999996 99999999987 5799999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 019392 285 VATPKKAS 292 (341)
Q Consensus 285 ~a~~k~~~ 292 (341)
|++++...
T Consensus 76 ~a~~~~~~ 83 (90)
T 2dnq_A 76 ASKNKSKA 83 (90)
T ss_dssp CSSCCCCC
T ss_pred ECCCCCCC
Confidence 99988765
No 153
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.78 E-value=1.5e-18 Score=131.99 Aligned_cols=88 Identities=24% Similarity=0.309 Sum_probs=80.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCc
Q 019392 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (341)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~ 189 (341)
....+.++|||+|||+++++++|+++|+.||.|.+|+|+.++.+++++|||||+|.+.++|++|++.|++..| .++.|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l 97 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQI--GMKRL 97 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE--TTEEC
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEE--CCEEE
Confidence 3446778999999999999999999999999999999999998999999999999999999999999999999 67889
Q ss_pred ccccccccCC
Q 019392 190 RLNWATFSGS 199 (341)
Q Consensus 190 ~~~~~~~~~~ 199 (341)
+|.|+.....
T Consensus 98 ~V~~a~~~~~ 107 (115)
T 2cpz_A 98 KVQLKRSKND 107 (115)
T ss_dssp EEECCCCSCC
T ss_pred EEEEcCCCCc
Confidence 9988876543
No 154
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.78 E-value=6.5e-19 Score=135.54 Aligned_cols=84 Identities=13% Similarity=0.263 Sum_probs=75.2
Q ss_pred cCCCceEEeCCCCCCCCHHHHH----HHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCcc
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQ----ETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP 280 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~----~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~ 280 (341)
..+.++|||+|||+.+++++|+ ++|+ .||.|.+|.+.+ +++++|||||+|.+.++|.+|++.|||..|.|+.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~-~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~ 101 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALAS-SQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNP 101 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHH-HHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhc-cCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCE
Confidence 3457799999999999999876 6997 999999988753 5789999999999999999999999999999999
Q ss_pred EEEEecCCCCCC
Q 019392 281 MRIDVATPKKAS 292 (341)
Q Consensus 281 i~v~~a~~k~~~ 292 (341)
|+|.|++.+...
T Consensus 102 l~V~~a~~~~~~ 113 (127)
T 2a3j_A 102 LVITFSETPQSQ 113 (127)
T ss_dssp CEEEECCCCCHH
T ss_pred EEEEEccCcchh
Confidence 999999887543
No 155
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=7.7e-19 Score=128.76 Aligned_cols=86 Identities=21% Similarity=0.323 Sum_probs=79.0
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCC
Q 019392 108 NNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQ 187 (341)
Q Consensus 108 ~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~ 187 (341)
........++|||+|||+++++++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|.+|++.|++..+ .++
T Consensus 8 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~ 85 (95)
T 2cqc_A 8 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL--DGR 85 (95)
T ss_dssp CCCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEE--TTE
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE--CCE
Confidence 334567789999999999999999999999999999999999998999999999999999999999999999999 678
Q ss_pred Cccccccc
Q 019392 188 PFRLNWAT 195 (341)
Q Consensus 188 ~~~~~~~~ 195 (341)
.+++.|+.
T Consensus 86 ~l~v~~a~ 93 (95)
T 2cqc_A 86 RIRVSGPS 93 (95)
T ss_dssp EEEEECCS
T ss_pred EEEEEecC
Confidence 88888765
No 156
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.5e-18 Score=130.39 Aligned_cols=79 Identities=24% Similarity=0.310 Sum_probs=73.6
Q ss_pred CCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecC-----cc
Q 019392 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSS-----RP 280 (341)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g-----~~ 280 (341)
...++|||+|||+++++++|+++|+ .||.|.+|+|+.+ |||||+|.+.++|.+||+.||+..|.| +.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMR-EAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHG-GGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 4567999999999999999999996 9999999999876 799999999999999999999999999 99
Q ss_pred EEEEecCCCCCC
Q 019392 281 MRIDVATPKKAS 292 (341)
Q Consensus 281 i~v~~a~~k~~~ 292 (341)
|+|.++.++...
T Consensus 85 i~V~~a~~~~~~ 96 (108)
T 1x4c_A 85 IRVKVDGPRSPS 96 (108)
T ss_dssp EEEEESSCCSCC
T ss_pred EEEEeCCCCCCC
Confidence 999999987654
No 157
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.3e-19 Score=136.50 Aligned_cols=88 Identities=23% Similarity=0.402 Sum_probs=76.3
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~ 284 (341)
..+.++|||+|||+++++++|+++|+ .||.|.++.+..+..+++++|||||+|.+.++|.+||+.|||..|+|+.|+|.
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~-~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFA-RFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTH-HHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-HhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34678999999999999999999996 99999544333333378999999999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q 019392 285 VATPKKASG 293 (341)
Q Consensus 285 ~a~~k~~~~ 293 (341)
|++++....
T Consensus 101 ~a~~~~~~~ 109 (115)
T 2cpx_A 101 FGKNKKQRS 109 (115)
T ss_dssp ECCCCSCCC
T ss_pred EccCCCCCC
Confidence 999887653
No 158
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.1e-19 Score=140.07 Aligned_cols=84 Identities=20% Similarity=0.342 Sum_probs=77.4
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~ 284 (341)
....++|||+|||+++++++|+++|+ .||.|.++.++.+..+|+++|||||+|.+.++|.+||+ ||+..|+|+.|+|.
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFK-KLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSC-SSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHH-hcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 34568999999999999999999996 99999997777777899999999999999999999998 99999999999999
Q ss_pred ecCCCC
Q 019392 285 VATPKK 290 (341)
Q Consensus 285 ~a~~k~ 290 (341)
++.++.
T Consensus 100 ~a~~~~ 105 (124)
T 1wel_A 100 PITKKG 105 (124)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 998764
No 159
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.78 E-value=6.3e-19 Score=130.78 Aligned_cols=95 Identities=24% Similarity=0.339 Sum_probs=80.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCccccccc
Q 019392 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT 195 (341)
Q Consensus 116 ~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~~~ 195 (341)
++|||+|||+++|+++|+++|+.||.|.+|+++.+ ++|||||+|.+.++|.+|++.|++..+ .++.+++.|+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V~~a~ 73 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVI--CGSRVRVELST 73 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCS--SSCCCEEEESS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeE--CCcEEEEEEcc
Confidence 58999999999999999999999999999999987 569999999999999999999999999 66778888887
Q ss_pred ccCCCCccc-----cCCCceEEeCCCC
Q 019392 196 FSGSDRRTE-----ACSDLSIFVGDLA 217 (341)
Q Consensus 196 ~~~~~~~~~-----~~~~~~l~v~nlp 217 (341)
......... .....+|||+||+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 74 GMPRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp SCCCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CCCCcccCCCCCccccCCCceecCCCC
Confidence 654333221 1236689999996
No 160
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.78 E-value=7e-20 Score=135.97 Aligned_cols=85 Identities=16% Similarity=0.452 Sum_probs=77.7
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~ 284 (341)
....++|||+|||+++++++|+++|+ .||.|.+ .++.+..+++++|||||+|.+.++|.+||+ ||+..|.|+.|+|.
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAIS-ELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHH-HHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-HhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEE
Confidence 34567999999999999999999997 9999988 677777889999999999999999999998 99999999999999
Q ss_pred ecCCCCCC
Q 019392 285 VATPKKAS 292 (341)
Q Consensus 285 ~a~~k~~~ 292 (341)
+++++...
T Consensus 91 ~a~~~~~~ 98 (101)
T 1fj7_A 91 KPKGRDGT 98 (101)
T ss_dssp CCSCCCCS
T ss_pred EcCCCCCC
Confidence 99987654
No 161
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=4.9e-19 Score=132.50 Aligned_cols=79 Identities=22% Similarity=0.352 Sum_probs=73.2
Q ss_pred CCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEec
Q 019392 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (341)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a 286 (341)
...+|||+|||+++++++|+++|+ .| .|.+|+|++|+. |+++|||||+|.+.++|.+|| .+|+..|+||.|+|..+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~-~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFH-GL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTT-TS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhc-cC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 346899999999999999999996 99 899999999965 999999999999999999999 79999999999999988
Q ss_pred CCC
Q 019392 287 TPK 289 (341)
Q Consensus 287 ~~k 289 (341)
.++
T Consensus 91 ~~~ 93 (109)
T 2dnn_A 91 TER 93 (109)
T ss_dssp CHH
T ss_pred Ccc
Confidence 654
No 162
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.78 E-value=2.1e-19 Score=131.12 Aligned_cols=86 Identities=21% Similarity=0.287 Sum_probs=75.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCC--cEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCC--CCCC
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQ--VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLM--PNTD 186 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~--v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~--~~~~ 186 (341)
......||||+|||+++|+++|+++|+.||. +.+|++++|+.+|+++|||||+|.+.++|.+|++.|++... ...+
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 3457789999999999999999999999994 77999999999999999999999999999999999999741 1267
Q ss_pred CCcccccccc
Q 019392 187 QPFRLNWATF 196 (341)
Q Consensus 187 ~~~~~~~~~~ 196 (341)
+.++|.|++.
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 8888888753
No 163
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=9e-19 Score=128.14 Aligned_cols=82 Identities=21% Similarity=0.380 Sum_probs=76.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcc
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (341)
.....++|||+|||+++++++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|.+|++.|++..+ .++.++
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~ 89 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQL--FGRVIK 89 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEE--TTEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCee--CCcEEE
Confidence 446778999999999999999999999999999999999998999999999999999999999999999999 677888
Q ss_pred cccc
Q 019392 191 LNWA 194 (341)
Q Consensus 191 ~~~~ 194 (341)
+.|+
T Consensus 90 v~~a 93 (94)
T 2e5h_A 90 ASIA 93 (94)
T ss_dssp EEEC
T ss_pred EEec
Confidence 8776
No 164
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=2.4e-18 Score=126.10 Aligned_cols=84 Identities=25% Similarity=0.538 Sum_probs=78.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcccc
Q 019392 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (341)
Q Consensus 113 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (341)
...++|||+|||+++++++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|.+|++.|++..+ .++.++|.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V~ 80 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFEL--AGRPMRVG 80 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCS--SSSCCEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCee--CCcEEEEE
Confidence 4678999999999999999999999999999999999998999999999999999999999999999999 67888988
Q ss_pred cccccC
Q 019392 193 WATFSG 198 (341)
Q Consensus 193 ~~~~~~ 198 (341)
|+....
T Consensus 81 ~a~~~~ 86 (95)
T 2dnz_A 81 HVTERL 86 (95)
T ss_dssp ESSCCC
T ss_pred Eccccc
Confidence 887543
No 165
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.78 E-value=1.9e-18 Score=129.36 Aligned_cols=90 Identities=20% Similarity=0.424 Sum_probs=81.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCC-CCCCCCC
Q 019392 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSL-MPNTDQP 188 (341)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~-~~~~~~~ 188 (341)
......++|||+|||+++|+++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|.+|++.|++.. +.+.++.
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 355678999999999999999999999999999999999999899999999999999999999999999976 5556788
Q ss_pred cccccccccCC
Q 019392 189 FRLNWATFSGS 199 (341)
Q Consensus 189 ~~~~~~~~~~~ 199 (341)
+++.|+.....
T Consensus 88 l~v~~a~~~~~ 98 (106)
T 2dgp_A 88 IQVKPADSESR 98 (106)
T ss_dssp CEEEECCCCSC
T ss_pred EEEEECCcccc
Confidence 99998876543
No 166
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=2.8e-18 Score=126.76 Aligned_cols=86 Identities=20% Similarity=0.362 Sum_probs=78.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcc
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (341)
.....++|||+|||+++++++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|.+|++ +++..+ .++.++
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~--~g~~l~ 82 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDI--MGKKVE 82 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBS--SSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEE--CCeEEE
Confidence 34677999999999999999999999999999999999999899999999999999999999998 999999 678888
Q ss_pred cccccccCC
Q 019392 191 LNWATFSGS 199 (341)
Q Consensus 191 ~~~~~~~~~ 199 (341)
|.++.....
T Consensus 83 V~~a~~~~~ 91 (99)
T 2dgs_A 83 VKRAEPRDS 91 (99)
T ss_dssp EEECCCCCC
T ss_pred EEECCCCcc
Confidence 888875543
No 167
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=2.6e-18 Score=127.87 Aligned_cols=89 Identities=25% Similarity=0.450 Sum_probs=80.0
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCC
Q 019392 107 NNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186 (341)
Q Consensus 107 ~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~ 186 (341)
.........++|||+|||+++|+++|+++|+.||.|.+|+++.+ ++.++|||||+|.+.++|.+|++.|++..+ .+
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g 82 (103)
T 2d9p_A 7 GDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIV--AT 82 (103)
T ss_dssp CCCCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBS--SS
T ss_pred CCccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEe--CC
Confidence 33445678899999999999999999999999999999999998 789999999999999999999999999999 77
Q ss_pred CCcccccccccCC
Q 019392 187 QPFRLNWATFSGS 199 (341)
Q Consensus 187 ~~~~~~~~~~~~~ 199 (341)
+.++|.|+.....
T Consensus 83 ~~l~V~~a~~~~~ 95 (103)
T 2d9p_A 83 KPLYVALAQRKEE 95 (103)
T ss_dssp SBCEEEECSSCCC
T ss_pred cEEEEEEeccccc
Confidence 8889988876543
No 168
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.78 E-value=8.5e-19 Score=126.33 Aligned_cols=82 Identities=29% Similarity=0.608 Sum_probs=75.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcccc
Q 019392 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (341)
Q Consensus 113 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (341)
.+.++|||+|||.++++++|+++|+.||.|.+|+++.++.++.++|||||+|.+.++|.+|++.|++..+ .++.+++.
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v~ 81 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL--GGRQIRTN 81 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE--CCeEEEEE
Confidence 5678999999999999999999999999999999999988999999999999999999999999999999 67888888
Q ss_pred cccc
Q 019392 193 WATF 196 (341)
Q Consensus 193 ~~~~ 196 (341)
|+..
T Consensus 82 ~a~~ 85 (87)
T 3bs9_A 82 WATR 85 (87)
T ss_dssp EEC-
T ss_pred ecCC
Confidence 8764
No 169
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.77 E-value=3.2e-19 Score=151.91 Aligned_cols=82 Identities=17% Similarity=0.280 Sum_probs=77.3
Q ss_pred CCceEEeCCCCCCCCHHHHHHHhcccCC--CeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEE
Q 019392 207 SDLSIFVGDLAPDVTDSILQETFSSKYP--SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (341)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~e~~G--~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~ 284 (341)
..++|||+||++++|+++|+++|+ .|| .|.+|+|++|+.++++||||||+|.+.++|.+||+.||++.|.|+.|+|.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~-~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVH-SLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 145 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHH-TTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHH-HHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEE
Confidence 566899999999999999999996 999 99999999999999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 019392 285 VATPK 289 (341)
Q Consensus 285 ~a~~k 289 (341)
+++++
T Consensus 146 ~a~~~ 150 (229)
T 3q2s_C 146 PVNKQ 150 (229)
T ss_dssp ECCHH
T ss_pred ECCCC
Confidence 98765
No 170
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.64 E-value=1.7e-20 Score=143.01 Aligned_cols=87 Identities=25% Similarity=0.370 Sum_probs=81.3
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeE--------EEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeee
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKG--------AKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC 276 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~--------v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i 276 (341)
..+.++|||+|||+++++++|+++|+ .||.|.+ |+|++++.+++++|||||+|.+.++|.+||+.||+..|
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFK-QIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 34667999999999999999999996 9999999 99999988999999999999999999999999999999
Q ss_pred cCccEEEEecCCCCCC
Q 019392 277 SSRPMRIDVATPKKAS 292 (341)
Q Consensus 277 ~g~~i~v~~a~~k~~~ 292 (341)
+|+.|+|++++++...
T Consensus 83 ~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 83 SGNPIKVSFATRRADF 98 (116)
Confidence 9999999999987654
No 171
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.77 E-value=8e-19 Score=130.20 Aligned_cols=76 Identities=13% Similarity=0.270 Sum_probs=71.2
Q ss_pred CCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEec
Q 019392 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (341)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a 286 (341)
..++|||+|||.++++++|+++|+ .||.|.+|++. +++|||||+|.+.++|.+|++.|||..|+|+.|+|+|+
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~-~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQ-NFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHH-TTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHH-hCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 467999999999999999999996 99999999987 35789999999999999999999999999999999999
Q ss_pred CCC
Q 019392 287 TPK 289 (341)
Q Consensus 287 ~~k 289 (341)
+++
T Consensus 99 ~~~ 101 (101)
T 2la4_A 99 KER 101 (101)
T ss_dssp CCC
T ss_pred cCC
Confidence 874
No 172
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.77 E-value=5.4e-19 Score=134.38 Aligned_cols=105 Identities=12% Similarity=0.185 Sum_probs=91.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCccc
Q 019392 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (341)
Q Consensus 112 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~ 191 (341)
+...++|||+|||+++|+++|+++|+.||.|.+|+++.+ +.++|||||+|.+.++|.+|++.|+|..+ .++.+++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v 79 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNV--SNRYLVV 79 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBS--SSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEE--CCeEEEE
Confidence 457789999999999999999999999999999999875 45589999999999999999999999999 6788888
Q ss_pred ccccccCCCCccccCCCceEEeCCCCCCCCHHHHHHHhcccCCC
Q 019392 192 NWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPS 235 (341)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~ 235 (341)
.|+...... .+++...++++|.++|+ +||.
T Consensus 80 ~~a~~~~~~-------------~~~~~~~~~~~l~~~~~-~~g~ 109 (115)
T 3lqv_A 80 LYYNANRAF-------------QKMDTKKKEEQLKLLKE-KYGI 109 (115)
T ss_dssp EECCHHHHT-------------TTSCHHHHHHHHHHHHH-HHCC
T ss_pred EEecCChhh-------------hhhhHhHhHHHHHHHHH-HhCC
Confidence 888643221 57788899999999996 8984
No 173
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.77 E-value=1.8e-19 Score=126.06 Aligned_cols=75 Identities=27% Similarity=0.502 Sum_probs=71.4
Q ss_pred eEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEec
Q 019392 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (341)
Q Consensus 210 ~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a 286 (341)
+|||+|||+++++++|+++|+ .||.|.+|.+++++.+++++|||||+|.+.++|.+|++ +++..++|+.|+|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFG-GFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHH-HHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 599999999999999999996 99999999999999999999999999999999999996 5899999999999885
No 174
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.6e-18 Score=128.99 Aligned_cols=86 Identities=22% Similarity=0.348 Sum_probs=79.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcc
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (341)
...+.++|||+|||+++++++|+++|+.||.|.+|+++.++.++.++|||||+|.+.++|.+|++.|++..+ .++.++
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~ 86 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAEL--DGRELR 86 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCB--TTBCCE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEE--CCcEEE
Confidence 456789999999999999999999999999999999999998999999999999999999999999999999 678888
Q ss_pred cccccccC
Q 019392 191 LNWATFSG 198 (341)
Q Consensus 191 ~~~~~~~~ 198 (341)
|.|+....
T Consensus 87 V~~a~~~~ 94 (103)
T 2dnm_A 87 VQVARYGR 94 (103)
T ss_dssp EEECSSCC
T ss_pred EEECCcCC
Confidence 88887543
No 175
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.77 E-value=2.5e-19 Score=127.27 Aligned_cols=74 Identities=20% Similarity=0.399 Sum_probs=68.2
Q ss_pred CceEEeCCCCCCC------CHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCc-c
Q 019392 208 DLSIFVGDLAPDV------TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR-P 280 (341)
Q Consensus 208 ~~~l~v~nlp~~~------t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~-~ 280 (341)
+++|||+|||+.+ ++++|+++|+ .||.|.+|+|+ +.+|+++|||||+|.+.++|.+|++.|||..|+|+ .
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~-~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~ 77 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFS-KFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 77 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHH-TTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHh-hcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCcee
Confidence 3689999999999 7799999997 99999999987 36899999999999999999999999999999999 8
Q ss_pred EEEE
Q 019392 281 MRID 284 (341)
Q Consensus 281 i~v~ 284 (341)
|+|+
T Consensus 78 l~V~ 81 (81)
T 2krb_A 78 FRVN 81 (81)
T ss_dssp CCCC
T ss_pred EEeC
Confidence 8773
No 176
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.7e-18 Score=129.64 Aligned_cols=87 Identities=25% Similarity=0.385 Sum_probs=79.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhC------CCCCCC
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYS------GSLMPN 184 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~------~~~~~~ 184 (341)
.....++|||+|||+++|+++|+++|..||.|.+|+|+.++.++.++|||||+|.+.++|.+|++.|+ +..+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~-- 88 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL-- 88 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES--
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE--
Confidence 45678899999999999999999999999999999999999999999999999999999999999999 8888
Q ss_pred CCCCcccccccccCC
Q 019392 185 TDQPFRLNWATFSGS 199 (341)
Q Consensus 185 ~~~~~~~~~~~~~~~ 199 (341)
.++.++|.|+.....
T Consensus 89 ~g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 89 DGRQLKVDLAVTRDE 103 (111)
T ss_dssp SSCEEEEECCCCCCC
T ss_pred cCEEEEEEECCCCcc
Confidence 678888888876543
No 177
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.77 E-value=2.6e-18 Score=126.95 Aligned_cols=82 Identities=17% Similarity=0.397 Sum_probs=76.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEE--------EEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCC
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVN--------VKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLM 182 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~--------i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~ 182 (341)
.....++|||+|||+++|+++|+++|+.||.|.+ |+++.++.+|+++|||||+|.+.++|.+|++.|+|..+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 4567899999999999999999999999999999 99999998999999999999999999999999999999
Q ss_pred CCCCCCcccccc
Q 019392 183 PNTDQPFRLNWA 194 (341)
Q Consensus 183 ~~~~~~~~~~~~ 194 (341)
.++.+++.++
T Consensus 89 --~g~~l~V~~A 98 (99)
T 2la6_A 89 --SGNPIKVSFA 98 (99)
T ss_dssp --SSSBCEEEEC
T ss_pred --CCcEEEEEec
Confidence 5677888775
No 178
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.7e-18 Score=127.96 Aligned_cols=81 Identities=25% Similarity=0.458 Sum_probs=74.5
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~ 284 (341)
....++|||+|||+++++++|+++|+ .||.|.+|+|.++ +|||||+|.+.++|.+|++.|||..|+|+.|+|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFE-KYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTS-TTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHh-hcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 45678999999999999999999996 9999999999853 6899999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 019392 285 VATPKKAS 292 (341)
Q Consensus 285 ~a~~k~~~ 292 (341)
|++++...
T Consensus 85 ~a~~~~~~ 92 (99)
T 2cpj_A 85 FACHSASL 92 (99)
T ss_dssp ESSCCSCC
T ss_pred EcCCCCCC
Confidence 99987654
No 179
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=6.8e-19 Score=131.60 Aligned_cols=81 Identities=14% Similarity=0.204 Sum_probs=72.7
Q ss_pred cCCCceEEeCCCCCC-CCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCC--eeecCccE
Q 019392 205 ACSDLSIFVGDLAPD-VTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG--VYCSSRPM 281 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~-~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~--~~i~g~~i 281 (341)
..+.++|||+|||++ +++++|+++|+ .||.|.+|+|++ +||||||+|++.++|.+|++.|++ ..|.|+.|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~-~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAE-PYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTT-TTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHH-hcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 456789999999998 99999999996 999999999973 478999999999999999998864 56999999
Q ss_pred EEEecCCCCCC
Q 019392 282 RIDVATPKKAS 292 (341)
Q Consensus 282 ~v~~a~~k~~~ 292 (341)
+|.|++.+...
T Consensus 95 ~V~~a~~~~~~ 105 (112)
T 1x4f_A 95 KVDLSEKYKKL 105 (112)
T ss_dssp EEEEECSCSSS
T ss_pred EEEECcccccc
Confidence 99999887655
No 180
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2.2e-18 Score=127.35 Aligned_cols=87 Identities=43% Similarity=0.794 Sum_probs=78.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcE-EEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCC-
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVV-NVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP- 188 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~-~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~- 188 (341)
.....++|||+|||+++++++|+++|+.||.|. +|+++.++.+++++|||||+|.+.++|++|++.|++..+.+....
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 346789999999999999999999999999999 999999999999999999999999999999999999999544322
Q ss_pred -ccccccccc
Q 019392 189 -FRLNWATFS 197 (341)
Q Consensus 189 -~~~~~~~~~ 197 (341)
+++.|+...
T Consensus 85 ~l~v~~a~~~ 94 (99)
T 2div_A 85 RFKLNYATYS 94 (99)
T ss_dssp ECCEEETTCC
T ss_pred eEEEeecCCC
Confidence 888888654
No 181
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2e-18 Score=127.03 Aligned_cols=81 Identities=19% Similarity=0.346 Sum_probs=73.2
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~ 284 (341)
....++|||+|||+++++++|+++|+ .||.|. +.++.+ +++|||||+|.+.++|.+|++.|||..|+|+.|+|+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~-~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALR-ELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHH-HTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHH-hcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34567999999999999999999996 999997 677654 678999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 019392 285 VATPKKA 291 (341)
Q Consensus 285 ~a~~k~~ 291 (341)
+++++..
T Consensus 90 ~a~~~~~ 96 (97)
T 2e5j_A 90 LARQQRD 96 (97)
T ss_dssp ECCCCCC
T ss_pred EcCCCCC
Confidence 9988753
No 182
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.2e-18 Score=127.31 Aligned_cols=86 Identities=17% Similarity=0.244 Sum_probs=79.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCccc
Q 019392 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (341)
Q Consensus 112 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~ 191 (341)
..+.++|||+|||+++|+++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|.+|++.|++..+ .++.++|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V 82 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVF--QGRMLHV 82 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEES--SSCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEE
Confidence 45788999999999999999999999999999999999998999999999999999999999999999999 6788899
Q ss_pred ccccccCC
Q 019392 192 NWATFSGS 199 (341)
Q Consensus 192 ~~~~~~~~ 199 (341)
.++.....
T Consensus 83 ~~a~~~~~ 90 (99)
T 1whw_A 83 LPSTIKKE 90 (99)
T ss_dssp EECCCCST
T ss_pred EEcCCCcc
Confidence 88876543
No 183
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.6e-18 Score=130.44 Aligned_cols=82 Identities=22% Similarity=0.457 Sum_probs=75.5
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~ 284 (341)
....++|||+|||.++++++|+++|+ .||.|.+|+|+.+ +|||||+|.+.++|.+|++.|||..|+|+.|+|.
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~-~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFS-PFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHH-HHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567999999999999999999997 9999999999875 6899999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q 019392 285 VATPKKASG 293 (341)
Q Consensus 285 ~a~~k~~~~ 293 (341)
|++++....
T Consensus 95 ~a~~~~~~~ 103 (109)
T 1x4g_A 95 WGKESPDMT 103 (109)
T ss_dssp CCCCCCSSC
T ss_pred ecCCCCCCC
Confidence 999887553
No 184
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.77 E-value=2.4e-18 Score=133.25 Aligned_cols=86 Identities=20% Similarity=0.329 Sum_probs=79.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCc
Q 019392 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (341)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~ 189 (341)
....+.++|||+|||+++|+++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|++||+.|++..| .++.|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i--~g~~l 118 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL--DGRRI 118 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCS--SSSCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE--CCEEE
Confidence 3456789999999999999999999999999999999999998999999999999999999999999999999 67888
Q ss_pred cccccccc
Q 019392 190 RLNWATFS 197 (341)
Q Consensus 190 ~~~~~~~~ 197 (341)
+|.|+...
T Consensus 119 ~V~~a~~~ 126 (129)
T 2kxn_B 119 RVDFSITK 126 (129)
T ss_dssp EESCCSSS
T ss_pred EEEEecCC
Confidence 88887654
No 185
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=3.2e-18 Score=126.71 Aligned_cols=84 Identities=17% Similarity=0.342 Sum_probs=77.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcc
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (341)
...+.++|||+|||+++|+++|+++|+.||.|.+|+++.++ +|+++|||||+|.+.++|.+|++.|++..+ .++.++
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 89 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTI--KENIIK 89 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEES--SSCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEE--CCEEEE
Confidence 44677899999999999999999999999999999999998 899999999999999999999999999999 678888
Q ss_pred ccccccc
Q 019392 191 LNWATFS 197 (341)
Q Consensus 191 ~~~~~~~ 197 (341)
+.|+...
T Consensus 90 v~~a~~~ 96 (100)
T 2do4_A 90 VAISNSG 96 (100)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 8887654
No 186
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.77 E-value=1.2e-18 Score=124.90 Aligned_cols=81 Identities=22% Similarity=0.445 Sum_probs=76.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCccc
Q 019392 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (341)
Q Consensus 112 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~ 191 (341)
..+.++|||+|||+++++++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|.+|++.|++..+ .++.+++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v 81 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL--FGRTIRV 81 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE--TTEECEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEE
Confidence 45789999999999999999999999999999999999988999999999999999999999999999999 6778888
Q ss_pred ccc
Q 019392 192 NWA 194 (341)
Q Consensus 192 ~~~ 194 (341)
.|+
T Consensus 82 ~~a 84 (85)
T 3mdf_A 82 NLA 84 (85)
T ss_dssp EEC
T ss_pred EEc
Confidence 776
No 187
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.77 E-value=6e-19 Score=127.95 Aligned_cols=80 Identities=21% Similarity=0.382 Sum_probs=70.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcC--CcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCccccc
Q 019392 116 KTIWIGDLFHWMDETFLHNCFSHTG--QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (341)
Q Consensus 116 ~~l~v~nLp~~~te~~l~~~f~~~G--~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~ 193 (341)
.+|||+|||+++|+++|+++|+.|| .|.+|+++.++.+|+++|||||+|.+.++|++|++.|+|..+ .++.++|.+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~--~gr~i~V~~ 79 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKREL--HGQNPVVTP 79 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCS--SSCCCEECC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCee--CCEEEEEEE
Confidence 5799999999999999999999999 999999999999999999999999999999999999999999 677788877
Q ss_pred cccc
Q 019392 194 ATFS 197 (341)
Q Consensus 194 ~~~~ 197 (341)
+...
T Consensus 80 ~~~~ 83 (90)
T 3p5t_L 80 SNKL 83 (90)
T ss_dssp C---
T ss_pred CCCC
Confidence 7654
No 188
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.77 E-value=2.1e-19 Score=134.71 Aligned_cols=83 Identities=14% Similarity=0.231 Sum_probs=76.9
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCC---eeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPS---VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~---v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i 281 (341)
....++|||+|||+++|+++|+++|+ .||. |.+|+|++++. |+++|||||+|.+.++|.+||+ +|+..|+|+.|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~-~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFS-DCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTT-TSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHH-hcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 44677999999999999999999997 9888 89999999977 9999999999999999999998 99999999999
Q ss_pred EEEecCCCC
Q 019392 282 RIDVATPKK 290 (341)
Q Consensus 282 ~v~~a~~k~ 290 (341)
+|.++.++.
T Consensus 85 ~V~~a~~~~ 93 (107)
T 2lmi_A 85 EVYEINNED 93 (107)
T ss_dssp CCEECCHHH
T ss_pred EEEECCHHH
Confidence 999988754
No 189
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.77 E-value=4.5e-18 Score=127.56 Aligned_cols=86 Identities=23% Similarity=0.507 Sum_probs=79.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCc
Q 019392 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (341)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~ 189 (341)
......++|||+|||.++++++|+++|+.||.|.+|+++.++.+|+++|||||+|.+.++|.+|++.|+|..+ .++.+
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i--~g~~l 98 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL--AGRPM 98 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCS--SSSCC
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEE--CCEEE
Confidence 3456789999999999999999999999999999999999998999999999999999999999999999999 67888
Q ss_pred cccccccc
Q 019392 190 RLNWATFS 197 (341)
Q Consensus 190 ~~~~~~~~ 197 (341)
+|.++...
T Consensus 99 ~V~~a~~k 106 (108)
T 2jrs_A 99 KVGHVTER 106 (108)
T ss_dssp EEECSCSS
T ss_pred EEEEcccC
Confidence 88887643
No 190
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.77 E-value=8.7e-19 Score=131.42 Aligned_cols=79 Identities=13% Similarity=0.126 Sum_probs=71.2
Q ss_pred CCceEEeCCCCCCCCHHHHHHHhcccCC-CeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEe
Q 019392 207 SDLSIFVGDLAPDVTDSILQETFSSKYP-SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (341)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~e~~G-~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~ 285 (341)
..++|||+|||+++++++|+++|+ .|| .|..+.|..+ +++|||||+|.+.++|++||+.|||..|+|+.|+|++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~-~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLAR-ENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHH-HHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHH-HhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 457999999999999999999996 999 8999988642 4789999999999999999999999999999999999
Q ss_pred cCCCC
Q 019392 286 ATPKK 290 (341)
Q Consensus 286 a~~k~ 290 (341)
++...
T Consensus 102 a~~~p 106 (111)
T 2jvr_A 102 DDNPP 106 (111)
T ss_dssp SCC--
T ss_pred CCCCC
Confidence 87654
No 191
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.77 E-value=1.8e-18 Score=123.46 Aligned_cols=81 Identities=35% Similarity=0.597 Sum_probs=75.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcccccc
Q 019392 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194 (341)
Q Consensus 115 ~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~~ 194 (341)
+.+|||+|||+++++++|+++|+.||.|.+|+++.++.+|+++|||||+|.+.++|.+|++.|+|..+ .++.+++.|+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~--~g~~l~v~~a 78 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL--NGRPLRINWA 78 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE--TTEECEEEEC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCee--CCcEEEEEec
Confidence 46899999999999999999999999999999999988999999999999999999999999999999 6788888887
Q ss_pred ccc
Q 019392 195 TFS 197 (341)
Q Consensus 195 ~~~ 197 (341)
...
T Consensus 79 ~~~ 81 (83)
T 3md1_A 79 AKL 81 (83)
T ss_dssp CCC
T ss_pred CcC
Confidence 643
No 192
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.77 E-value=2.3e-18 Score=129.14 Aligned_cols=81 Identities=23% Similarity=0.474 Sum_probs=72.6
Q ss_pred cccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEE
Q 019392 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (341)
Q Consensus 203 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~ 282 (341)
......++|||+|||+++++++|+++|+ .||.|.+|+|. +|||||+|.+.++|.+|++.|||..|+|+.|+
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~-~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 96 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFG-PFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLE 96 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHT-TTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHH-hcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 3345678999999999999999999996 99999999987 68999999999999999999999999999999
Q ss_pred EEecCCCCCC
Q 019392 283 IDVATPKKAS 292 (341)
Q Consensus 283 v~~a~~k~~~ 292 (341)
|.|++++..+
T Consensus 97 V~~a~~~~~r 106 (108)
T 2jvo_A 97 VVYSKLPAKR 106 (108)
T ss_dssp EESCSCCC--
T ss_pred EEEecCCCCC
Confidence 9999887643
No 193
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.2e-18 Score=128.08 Aligned_cols=85 Identities=20% Similarity=0.427 Sum_probs=78.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcc
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (341)
.....++|||+|||+++++++|+++|+.||.|.+|+++.++.+|.++|||||+|.+.++|.+|++.|++..+ .++.++
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 96 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL--MGQPIS 96 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBS--SSSBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEE--CCcEEE
Confidence 345678999999999999999999999999999999999999999999999999999999999999999999 678888
Q ss_pred ccccccc
Q 019392 191 LNWATFS 197 (341)
Q Consensus 191 ~~~~~~~ 197 (341)
|.|+...
T Consensus 97 V~~a~~~ 103 (106)
T 1p27_B 97 VDWCFVR 103 (106)
T ss_dssp EEESEES
T ss_pred EEeecCC
Confidence 8887654
No 194
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.77 E-value=1.7e-18 Score=134.66 Aligned_cols=85 Identities=19% Similarity=0.295 Sum_probs=77.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEE--EEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCC----CCC
Q 019392 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVN--VKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGS----LMP 183 (341)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~--i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~----~~~ 183 (341)
......++|||+|||+++|+++|+++|+.||.|.. |+|++|+.+|+++|||||+|.+. +|.+|++.|++. .+
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~- 95 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI- 95 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG-
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC-
Confidence 34567889999999999999999999999999976 99999999999999999999999 999999999999 77
Q ss_pred CCCCCccccccccc
Q 019392 184 NTDQPFRLNWATFS 197 (341)
Q Consensus 184 ~~~~~~~~~~~~~~ 197 (341)
.++.|+|.|+...
T Consensus 96 -~gr~l~V~~a~~~ 108 (131)
T 2m2b_A 96 -DGKTINVEFAKGS 108 (131)
T ss_dssp -GGCCCCCEECCCS
T ss_pred -CCEEEEEEECCCC
Confidence 6778888887654
No 195
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=4.2e-18 Score=124.03 Aligned_cols=79 Identities=18% Similarity=0.421 Sum_probs=73.0
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~ 284 (341)
....++|||+|||+++++++|+++|+ .||.|.+|+|++ +||||+|.+.++|.+|++.||+..|.|+.|+|+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFE-EYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHH-TTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 45678999999999999999999996 999999999874 399999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 019392 285 VATPKKAS 292 (341)
Q Consensus 285 ~a~~k~~~ 292 (341)
+++++...
T Consensus 78 ~a~~~~~~ 85 (92)
T 2dgt_A 78 LSTSRLRT 85 (92)
T ss_dssp ESSCCCSC
T ss_pred EccCCCCC
Confidence 99987655
No 196
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.3e-18 Score=129.28 Aligned_cols=87 Identities=21% Similarity=0.382 Sum_probs=80.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcc
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (341)
...+.++|||+|||+++|+++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|.+|++.|++..| .++.++
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~ 85 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL--FGRTIR 85 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEE--TTEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCcEEE
Confidence 446789999999999999999999999999999999999988999999999999999999999999999999 678899
Q ss_pred cccccccCC
Q 019392 191 LNWATFSGS 199 (341)
Q Consensus 191 ~~~~~~~~~ 199 (341)
+.|+.....
T Consensus 86 V~~a~~~~~ 94 (102)
T 2cqb_A 86 VNLAKPMRI 94 (102)
T ss_dssp EEECCCCCC
T ss_pred EEeCCCCCC
Confidence 988876543
No 197
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=7.4e-18 Score=124.47 Aligned_cols=80 Identities=23% Similarity=0.473 Sum_probs=72.6
Q ss_pred ccCCCceEEeCCCCCCCCHHHHHHHhcccC--CCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccE
Q 019392 204 EACSDLSIFVGDLAPDVTDSILQETFSSKY--PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281 (341)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~--G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i 281 (341)
.....++|||+|||+++++++|+++|+ .| |.|.+|++. +|||||+|.+.++|.+|++.|||..|+|+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFN-NIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPI 81 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHH-TTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHH-hcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 345678999999999999999999996 99 999998764 5699999999999999999999999999999
Q ss_pred EEEecCCCCCC
Q 019392 282 RIDVATPKKAS 292 (341)
Q Consensus 282 ~v~~a~~k~~~ 292 (341)
+|.|++++...
T Consensus 82 ~v~~a~~~~~~ 92 (99)
T 2cpd_A 82 EVTLAKPVDKD 92 (99)
T ss_dssp EEECCCCCCCC
T ss_pred EEEECCCCCCC
Confidence 99999987654
No 198
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.4e-18 Score=130.15 Aligned_cols=87 Identities=28% Similarity=0.447 Sum_probs=79.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCC
Q 019392 109 NFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188 (341)
Q Consensus 109 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~ 188 (341)
.......++|||+|||+++|+++|+++|+.||.|.+|+|+.++.+++++|||||+|.+.++|.+||+.+++ .| .++.
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~--~g~~ 87 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-II--DGRK 87 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EE--TTEE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cC--CCEE
Confidence 34567889999999999999999999999999999999999998999999999999999999999999998 67 6788
Q ss_pred cccccccccC
Q 019392 189 FRLNWATFSG 198 (341)
Q Consensus 189 ~~~~~~~~~~ 198 (341)
|+|.|+....
T Consensus 88 l~V~~a~~~~ 97 (116)
T 2cqd_A 88 ANVNLAYLGA 97 (116)
T ss_dssp CEEEESTTTC
T ss_pred EEEEEcccCC
Confidence 8888886543
No 199
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.76 E-value=4e-18 Score=125.30 Aligned_cols=78 Identities=17% Similarity=0.362 Sum_probs=71.2
Q ss_pred ccCCCceEEeCCCCC-CCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEE
Q 019392 204 EACSDLSIFVGDLAP-DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (341)
Q Consensus 204 ~~~~~~~l~v~nlp~-~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~ 282 (341)
.....++|||+|||+ ++++++|+++|+ .||.|.+|+|. +|||||+|.+.++|.+|++.|||..++|+.|+
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~-~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 88 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFS-PYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLI 88 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHG-GGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHH-hcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 345678999999998 999999999997 99999999983 68999999999999999999999999999999
Q ss_pred EEecCCCC
Q 019392 283 IDVATPKK 290 (341)
Q Consensus 283 v~~a~~k~ 290 (341)
|++++++.
T Consensus 89 V~~a~~~~ 96 (97)
T 2xnq_A 89 LEVSSSNA 96 (97)
T ss_dssp EEECCCCC
T ss_pred EEecCCCC
Confidence 99998753
No 200
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.76 E-value=2.5e-18 Score=130.66 Aligned_cols=83 Identities=18% Similarity=0.311 Sum_probs=75.7
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~ 284 (341)
....++|||+|||+++++++|+++|+ .||.|.+|.|+++ +.++|||||+|.+.++|.+|++.|||..++|+.|+|.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 80 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFG-KYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVL 80 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHH-TTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34567999999999999999999997 9999999999975 4569999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 019392 285 VATPKKA 291 (341)
Q Consensus 285 ~a~~k~~ 291 (341)
|+.++..
T Consensus 81 ~a~~~~~ 87 (115)
T 3lqv_A 81 YYNANRA 87 (115)
T ss_dssp ECCHHHH
T ss_pred EecCChh
Confidence 9987543
No 201
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.76 E-value=7.9e-19 Score=129.23 Aligned_cols=84 Identities=21% Similarity=0.392 Sum_probs=76.2
Q ss_pred cCCCceEEeCCCCCCCCHHHHH----HHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCcc
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQ----ETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP 280 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~----~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~ 280 (341)
..+.++|||+|||+++++++|+ ++|+ .||.|.+|++.. ++.++|||||+|.+.++|.+|++.|||..++|+.
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~-~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFS-RFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHG-GGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHH-hCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 3467899999999999999999 9996 999999999873 5778999999999999999999999999999999
Q ss_pred EEEEecCCCCCC
Q 019392 281 MRIDVATPKKAS 292 (341)
Q Consensus 281 i~v~~a~~k~~~ 292 (341)
|+|.|++++...
T Consensus 81 l~v~~a~~~~~~ 92 (97)
T 1nu4_A 81 MRIQYAKTDSDI 92 (97)
T ss_dssp CEEEECSSCCTH
T ss_pred EEEEEccCCCcc
Confidence 999999987543
No 202
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.76 E-value=2.3e-18 Score=126.50 Aligned_cols=83 Identities=22% Similarity=0.441 Sum_probs=77.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCccccc
Q 019392 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (341)
Q Consensus 114 ~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~ 193 (341)
++++|||+|||.++++++|+++|+.||.|.+|+++.++.+|+++|||||+|.+.++|.+|++.|+|..+ .++.+++.|
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V~~ 78 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQL--GSRFLKCGY 78 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeE--CCeEEEEEE
Confidence 368999999999999999999999999999999999998999999999999999999999999999999 668888888
Q ss_pred ccccC
Q 019392 194 ATFSG 198 (341)
Q Consensus 194 ~~~~~ 198 (341)
+....
T Consensus 79 a~~~~ 83 (96)
T 2x1f_A 79 SSNSD 83 (96)
T ss_dssp CSCSS
T ss_pred cCCCC
Confidence 87543
No 203
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=1.1e-17 Score=124.67 Aligned_cols=85 Identities=27% Similarity=0.476 Sum_probs=77.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHh-cCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCC-CCCCCCC
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSH-TGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSL-MPNTDQP 188 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~-~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~-~~~~~~~ 188 (341)
.....++|||+|||+++|+++|+++|+. ||.|.+|+++.++ +|.++|||||+|.+.++|.+|++.|++.. + .++.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~--~g~~ 81 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGL--GSKP 81 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSS--SSSC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCccc--CCEe
Confidence 3467789999999999999999999999 9999999999998 99999999999999999999999999998 8 5677
Q ss_pred cccccccccC
Q 019392 189 FRLNWATFSG 198 (341)
Q Consensus 189 ~~~~~~~~~~ 198 (341)
+++.++....
T Consensus 82 l~v~~a~~~~ 91 (104)
T 2dhg_A 82 VRLSVAIPKA 91 (104)
T ss_dssp CCCCBCCCCC
T ss_pred EEEEEccCCC
Confidence 8888886544
No 204
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.76 E-value=4e-18 Score=126.88 Aligned_cols=86 Identities=22% Similarity=0.428 Sum_probs=78.2
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCC
Q 019392 109 NFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188 (341)
Q Consensus 109 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~ 188 (341)
.......++|||+|||+++++++|+++|+.|| |.+|+++.++.+++++|||||+|.+.++|.+|+ .|++..| .++.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~--~g~~ 84 (103)
T 2dng_A 9 ELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALL--GDRS 84 (103)
T ss_dssp CCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEE--TTEE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeE--CCeE
Confidence 34456789999999999999999999999997 999999999999999999999999999999999 8999999 6788
Q ss_pred cccccccccC
Q 019392 189 FRLNWATFSG 198 (341)
Q Consensus 189 ~~~~~~~~~~ 198 (341)
|+|.|+....
T Consensus 85 l~V~~a~~~~ 94 (103)
T 2dng_A 85 LRVDIAEGRK 94 (103)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEecCCC
Confidence 8888887544
No 205
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=4.1e-18 Score=122.12 Aligned_cols=76 Identities=16% Similarity=0.354 Sum_probs=70.4
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHh-CCeeecCccEEE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEM-NGVYCSSRPMRI 283 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l-~~~~i~g~~i~v 283 (341)
....++|||+|||.++++++|+++|+ .||.|.+|+++++ +|||||+|.+.++|.+|++.| ++..++|+.|+|
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~-~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v 81 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFY-QFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNV 81 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHH-TTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHH-hCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEE
Confidence 45668999999999999999999996 9999999999863 689999999999999999988 999999999999
Q ss_pred EecC
Q 019392 284 DVAT 287 (341)
Q Consensus 284 ~~a~ 287 (341)
+|++
T Consensus 82 ~~ak 85 (85)
T 2ytc_A 82 KWGR 85 (85)
T ss_dssp EECC
T ss_pred EecC
Confidence 9974
No 206
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.3e-18 Score=127.84 Aligned_cols=86 Identities=28% Similarity=0.417 Sum_probs=78.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCc
Q 019392 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (341)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~ 189 (341)
......++|||+|||+++++++|+++|+.||.|.+|+++.++.++.++|||||+|.+.++|.+||+. ++..| .++.+
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~--~g~~l 87 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTL--DGRNI 87 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEE--TTEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeE--CCEEE
Confidence 3567889999999999999999999999999999999999998999999999999999999999998 99888 67788
Q ss_pred ccccccccC
Q 019392 190 RLNWATFSG 198 (341)
Q Consensus 190 ~~~~~~~~~ 198 (341)
+|.++....
T Consensus 88 ~V~~a~~~~ 96 (105)
T 2dh8_A 88 DPKPCTPRG 96 (105)
T ss_dssp BCCCSCCSS
T ss_pred EEEEccCCC
Confidence 888887554
No 207
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.7e-18 Score=127.27 Aligned_cols=86 Identities=17% Similarity=0.298 Sum_probs=77.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCC-CCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCC
Q 019392 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQT-GQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188 (341)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~ 188 (341)
......++|||+|||+++|+++|+++|+.|| |.+|+|+.++.+ |+++|||||+|.+.++|.+|| .|++..| .++.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~--~g~~ 85 (104)
T 1wi8_A 10 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL--GNKR 85 (104)
T ss_dssp CCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEE--TTEE
T ss_pred CCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEe--CCcE
Confidence 3456779999999999999999999999999 999999999887 999999999999999999999 8999999 6788
Q ss_pred cccccccccCC
Q 019392 189 FRLNWATFSGS 199 (341)
Q Consensus 189 ~~~~~~~~~~~ 199 (341)
++|.++.....
T Consensus 86 l~V~~a~~~~~ 96 (104)
T 1wi8_A 86 IRVDVADQAQD 96 (104)
T ss_dssp CEEEECCCCCC
T ss_pred EEEEEccCCCC
Confidence 88888876543
No 208
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.75 E-value=5.9e-18 Score=127.51 Aligned_cols=79 Identities=30% Similarity=0.524 Sum_probs=72.1
Q ss_pred cCCCceEEeCCCCCC-CCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEE
Q 019392 205 ACSDLSIFVGDLAPD-VTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~-~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v 283 (341)
....++|||+|||++ +++++|+++|+ .||.|.+|+| ++|||||+|.+.++|.+|++.||+..|+|+.|+|
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~-~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 94 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFS-KYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDI 94 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHG-GGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHH-hCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 345689999999999 99999999996 9999999998 4689999999999999999999999999999999
Q ss_pred EecCCCCCC
Q 019392 284 DVATPKKAS 292 (341)
Q Consensus 284 ~~a~~k~~~ 292 (341)
.|+++.+..
T Consensus 95 ~~a~~~~~~ 103 (110)
T 1wf1_A 95 NMAGEPKPD 103 (110)
T ss_dssp EESCCCCSC
T ss_pred EECCCCCCC
Confidence 999865544
No 209
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.75 E-value=1.9e-18 Score=129.66 Aligned_cols=80 Identities=15% Similarity=0.232 Sum_probs=72.4
Q ss_pred ceEEeCCC----CCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCC----HHH----HHHHHH--HhCCe
Q 019392 209 LSIFVGDL----APDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGD----ENE----RSRAMT--EMNGV 274 (341)
Q Consensus 209 ~~l~v~nl----p~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~----~~~----A~~Al~--~l~~~ 274 (341)
.+|||+|| |+.+++++|+++|+ .||+|.+|.++.|+.||+++|||||+|.| .++ |.+|+. .|+|.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs-~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFK-KYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHH-TTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 58999999 99999999999997 99999999999999999999999999996 333 889988 78999
Q ss_pred eecCccEEEEecCCC
Q 019392 275 YCSSRPMRIDVATPK 289 (341)
Q Consensus 275 ~i~g~~i~v~~a~~k 289 (341)
.|+|+.|+|.+.+..
T Consensus 82 ~I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 82 FIMGFKFEVILNKHS 96 (136)
T ss_dssp EETTEEEEEEECCTT
T ss_pred eecCcEEEEEECccc
Confidence 999999999986654
No 210
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.75 E-value=1.3e-18 Score=128.79 Aligned_cols=82 Identities=24% Similarity=0.287 Sum_probs=76.1
Q ss_pred CCCCeEEEcCCCC------CCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCC
Q 019392 113 DETKTIWIGDLFH------WMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186 (341)
Q Consensus 113 ~~~~~l~v~nLp~------~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~ 186 (341)
...++|||+|||+ ++++++|+++|+.||.|.+|+|+.++.+|+++|||||+|.+.++|.+|++.|||..+ .+
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~--~g 81 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRL--DL 81 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBS--SS
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCccc--CC
Confidence 4578999999999 999999999999999999999999999999999999999999999999999999999 55
Q ss_pred -CCcccccccc
Q 019392 187 -QPFRLNWATF 196 (341)
Q Consensus 187 -~~~~~~~~~~ 196 (341)
+.+++.++..
T Consensus 82 ~r~l~V~~a~~ 92 (100)
T 3ns6_A 82 KHRLFLYTMKD 92 (100)
T ss_dssp SCBCEEEESHH
T ss_pred CeEEEEEECch
Confidence 7888887753
No 211
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.75 E-value=8.4e-18 Score=127.78 Aligned_cols=85 Identities=22% Similarity=0.454 Sum_probs=78.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcc
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (341)
.....++|||+|||+++|+++|+++|+.||.|.+|+++.++ +|.++|||||+|.+.++|++|++.|++..+ .++.++
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~--~g~~l~ 79 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSL--HGKAIK 79 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBC--SSSBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEE--CCEEEE
Confidence 34677899999999999999999999999999999999998 899999999999999999999999999999 677888
Q ss_pred cccccccC
Q 019392 191 LNWATFSG 198 (341)
Q Consensus 191 ~~~~~~~~ 198 (341)
|.|+....
T Consensus 80 V~~a~~~~ 87 (116)
T 2fy1_A 80 VEQAKKPS 87 (116)
T ss_dssp EEECCCSS
T ss_pred EEECCCCC
Confidence 88887544
No 212
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.4e-18 Score=126.34 Aligned_cols=84 Identities=29% Similarity=0.572 Sum_probs=78.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEE-EEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCccc
Q 019392 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNV-KVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (341)
Q Consensus 113 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i-~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~ 191 (341)
.+.++|||+|||+++|+++|+++|+.||.|.+| +++.++.++.++|||||+|.+.++|.+|++.|++..+ .++.+++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v 80 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL--CNRPITV 80 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEE--TTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEE--CCEEEEE
Confidence 467899999999999999999999999999999 9999988999999999999999999999999999999 6788899
Q ss_pred ccccccC
Q 019392 192 NWATFSG 198 (341)
Q Consensus 192 ~~~~~~~ 198 (341)
.|+....
T Consensus 81 ~~a~~~~ 87 (96)
T 1x5t_A 81 SYAFKKD 87 (96)
T ss_dssp EESCCCC
T ss_pred EEecccC
Confidence 8887554
No 213
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=8.6e-18 Score=125.06 Aligned_cols=87 Identities=26% Similarity=0.502 Sum_probs=77.5
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCC
Q 019392 109 NFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188 (341)
Q Consensus 109 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~ 188 (341)
.......++|||+|||+++++++|+++|+.||.|.+|+++.++. .++|||||+|.+.++|.+|++.|++..| .++.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~ 84 (103)
T 2cqi_A 9 MEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKI--LGKE 84 (103)
T ss_dssp CCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEE--TTEE
T ss_pred CCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCc--CCCe
Confidence 34557789999999999999999999999999999999999864 3689999999999999999999999999 6788
Q ss_pred cccccccccCC
Q 019392 189 FRLNWATFSGS 199 (341)
Q Consensus 189 ~~~~~~~~~~~ 199 (341)
++|.|+.....
T Consensus 85 l~V~~a~~~~~ 95 (103)
T 2cqi_A 85 VKVNWATTPSS 95 (103)
T ss_dssp EEEEECCCTTC
T ss_pred EEEEECCCCcc
Confidence 99999876543
No 214
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.75 E-value=1.6e-18 Score=127.37 Aligned_cols=82 Identities=18% Similarity=0.374 Sum_probs=73.5
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~ 284 (341)
....++|||+|||+++++++|+++|+ .||.|..+ ..+++++|||||+|.+.++|.+|++.|||..|+|+.|+|.
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~-~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFE-DALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHC-SEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHh-hCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567999999999999999999996 99988766 2568899999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 019392 285 VATPKKAS 292 (341)
Q Consensus 285 ~a~~k~~~ 292 (341)
++.++...
T Consensus 87 ~a~~~~~~ 94 (96)
T 1fjc_A 87 YTGEKGGT 94 (96)
T ss_dssp ECSSSCCC
T ss_pred EcCCCCCC
Confidence 99887644
No 215
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.3e-18 Score=128.98 Aligned_cols=87 Identities=16% Similarity=0.291 Sum_probs=79.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcE--------EEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCC
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVV--------NVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLM 182 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~--------~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~ 182 (341)
.....++|||+|||+++|+++|+++|+.||.|. .|+|+.++.+++++|||||+|.+.++|.+||+.|++..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 456789999999999999999999999999999 699999988999999999999999999999999999999
Q ss_pred CCCCCCcccccccccCC
Q 019392 183 PNTDQPFRLNWATFSGS 199 (341)
Q Consensus 183 ~~~~~~~~~~~~~~~~~ 199 (341)
.++.|+|.|+.....
T Consensus 91 --~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 91 --QGSKLKVSLARKKPP 105 (113)
T ss_dssp --TTEECEEECSSCCCC
T ss_pred --CCCEEEEEECCCCCC
Confidence 678888888876543
No 216
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.75 E-value=2.7e-18 Score=125.81 Aligned_cols=82 Identities=18% Similarity=0.452 Sum_probs=75.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcc
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (341)
.....++|||+|||+++++++|+++|+.||.|.+|++..++. ++++|||||+|.+.++|.+|++.|++..+ .++.++
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 88 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRL--YGRPIN 88 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEE--CCCEEE
Confidence 456789999999999999999999999999999999999985 99999999999999999999999999999 677888
Q ss_pred ccccc
Q 019392 191 LNWAT 195 (341)
Q Consensus 191 ~~~~~ 195 (341)
+.|+.
T Consensus 89 V~~a~ 93 (95)
T 2ywk_A 89 VSGPS 93 (95)
T ss_dssp EECCC
T ss_pred EEEcC
Confidence 88764
No 217
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=8.9e-19 Score=133.88 Aligned_cols=82 Identities=17% Similarity=0.191 Sum_probs=74.3
Q ss_pred CCCceEEeCCCCCCCCHHHHHHHhcccCCCe----eEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccE
Q 019392 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSV----KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281 (341)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v----~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i 281 (341)
....+|||+|||+++|+++|+++|+ .||.| .+|+|++| .+|+++|||||+|++.++|.+||+. |+..|+||.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~-~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i 97 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFG-QHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYI 97 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHH-TTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-hhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEE
Confidence 3467999999999999999999996 99975 68999999 5899999999999999999999975 9999999999
Q ss_pred EEEecCCCC
Q 019392 282 RIDVATPKK 290 (341)
Q Consensus 282 ~v~~a~~k~ 290 (341)
+|..+.++.
T Consensus 98 ~V~~a~~~e 106 (123)
T 2dha_A 98 ELFRSTAAE 106 (123)
T ss_dssp CCEEECHHH
T ss_pred EEEECCHHH
Confidence 999987654
No 218
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.75 E-value=4e-18 Score=125.13 Aligned_cols=80 Identities=16% Similarity=0.329 Sum_probs=71.5
Q ss_pred cCCCceEEeCCCCC-CCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEE
Q 019392 205 ACSDLSIFVGDLAP-DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (341)
Q Consensus 205 ~~~~~~l~v~nlp~-~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v 283 (341)
..+.++|||+|||+ ++++++|+++|+ .||.|.+|+|. +|||||+|.+.++|.+|++.|||..+.|+.|+|
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~-~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFS-PYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHT-TTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHH-hcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34678999999998 999999999997 99999999984 689999999999999999999999999999999
Q ss_pred EecCCCCCCC
Q 019392 284 DVATPKKASG 293 (341)
Q Consensus 284 ~~a~~k~~~~ 293 (341)
.|++++....
T Consensus 78 ~~a~~~~~~~ 87 (96)
T 2kvi_A 78 EVSSSNARPQ 87 (96)
T ss_dssp EEEECCCC--
T ss_pred EEcCcCCCCC
Confidence 9998876553
No 219
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.7e-18 Score=124.21 Aligned_cols=81 Identities=26% Similarity=0.349 Sum_probs=74.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcccc
Q 019392 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (341)
Q Consensus 113 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (341)
.+.++|||+|||+++++++|+++|+.||.|.+|+++.++.++.++|||||+|.+.++|.+|++.||+..+ .++.+++.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~~~~~ 80 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGV--QAQMAKQS 80 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTC--CEESCCSS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeE--eeEEEeec
Confidence 5678999999999999999999999999999999999998999999999999999999999999999998 66777776
Q ss_pred ccc
Q 019392 193 WAT 195 (341)
Q Consensus 193 ~~~ 195 (341)
|..
T Consensus 81 ~~~ 83 (85)
T 1x4e_A 81 GPS 83 (85)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 220
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.6e-17 Score=123.64 Aligned_cols=87 Identities=22% Similarity=0.412 Sum_probs=77.5
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCC
Q 019392 109 NFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188 (341)
Q Consensus 109 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~ 188 (341)
.......++|||+|||+++|+++|+++|+.||.|.+|+|+.++. .++|||||+|.+.++|.+|++.|++..| .++.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~ 84 (103)
T 2cq3_A 9 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVV--EGRK 84 (103)
T ss_dssp SCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEE--TTEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEE--CCEE
Confidence 34557789999999999999999999999999999999999863 3889999999999999999999999999 6788
Q ss_pred cccccccccCC
Q 019392 189 FRLNWATFSGS 199 (341)
Q Consensus 189 ~~~~~~~~~~~ 199 (341)
|++.|+.....
T Consensus 85 l~v~~a~~~~~ 95 (103)
T 2cq3_A 85 IEVNNATARVM 95 (103)
T ss_dssp CEEEECCSSCC
T ss_pred EEEEEcccCCC
Confidence 88888876543
No 221
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=4.1e-18 Score=125.60 Aligned_cols=85 Identities=21% Similarity=0.362 Sum_probs=77.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCC---CCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCc
Q 019392 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQ---TGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (341)
Q Consensus 113 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~---~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~ 189 (341)
.+.++|||+|||+++|+++|+++|+.||.|.+|++..++. ++.++|||||+|.+.++|.+|++.|++..+ .++.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l 80 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTV--DGHKL 80 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEE--TTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCee--CCeEE
Confidence 4678999999999999999999999999999999999876 568999999999999999999999999999 67888
Q ss_pred ccccccccCC
Q 019392 190 RLNWATFSGS 199 (341)
Q Consensus 190 ~~~~~~~~~~ 199 (341)
++.|+.....
T Consensus 81 ~V~~a~~~~~ 90 (98)
T 2cpf_A 81 EVRISERATK 90 (98)
T ss_dssp EEECSSCSSC
T ss_pred EEEEccCCCC
Confidence 8888875543
No 222
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=2.4e-18 Score=126.83 Aligned_cols=84 Identities=12% Similarity=0.127 Sum_probs=76.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcc
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (341)
.....++|||+|||+++++++|+++|..||.|.+++++.++.+|+++|||||+|.+.++|++|++.|++..| .++.++
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l~ 88 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI--GSRKVK 88 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEE--TTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCee--CCeEEE
Confidence 345678999999999999999999999999999999999988999999999999999999999999999999 667888
Q ss_pred cccccc
Q 019392 191 LNWATF 196 (341)
Q Consensus 191 ~~~~~~ 196 (341)
|.++..
T Consensus 89 V~~a~~ 94 (98)
T 2cqp_A 89 LVLGSG 94 (98)
T ss_dssp EEESSC
T ss_pred EEEcCC
Confidence 887653
No 223
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.75 E-value=5.4e-18 Score=134.61 Aligned_cols=79 Identities=22% Similarity=0.277 Sum_probs=71.6
Q ss_pred CCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecC--ccEEEE
Q 019392 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSS--RPMRID 284 (341)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g--~~i~v~ 284 (341)
...+|||+||++.+|+++|+++|+ +||.|++|+|..+ .++|||||+|++.++|++|++.|||..|.| +.|+|+
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs-~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFS-KFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHH-HHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHH-hcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 345799999999999999999997 9999999998754 257899999999999999999999999965 999999
Q ss_pred ecCCCC
Q 019392 285 VATPKK 290 (341)
Q Consensus 285 ~a~~k~ 290 (341)
|++++.
T Consensus 120 ~Ak~~~ 125 (164)
T 1sjr_A 120 FSKLTS 125 (164)
T ss_dssp ECSSSS
T ss_pred EecCCc
Confidence 999875
No 224
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=5.8e-18 Score=122.72 Aligned_cols=79 Identities=22% Similarity=0.423 Sum_probs=72.6
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~ 284 (341)
....++|||+|||+++++++|+++|+ .||.|.+|+|++ +||||+|.+.++|.+|++.|||..|+|+.|+|.
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFE-RRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHH-HHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-cCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 44678999999999999999999996 999999999874 399999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 019392 285 VATPKKAS 292 (341)
Q Consensus 285 ~a~~k~~~ 292 (341)
+++++...
T Consensus 77 ~a~~~~~~ 84 (90)
T 2dnp_A 77 LSTKGQKK 84 (90)
T ss_dssp ESCCCCCC
T ss_pred ECCCCCCC
Confidence 99887544
No 225
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6.9e-18 Score=124.35 Aligned_cols=81 Identities=17% Similarity=0.279 Sum_probs=71.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCC--CCCCCCCCC
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSG--SLMPNTDQP 188 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~--~~~~~~~~~ 188 (341)
.+.+.++|||+|||+++|+++|+++|++||.|.+|+|+++ ||||||+|++.++|.+|++.+++ ..+ .++.
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l--~Gr~ 83 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVL--RGQP 83 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEE--TTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceE--CCEE
Confidence 3467889999999999999999999999999999999976 49999999999999999998875 566 6789
Q ss_pred cccccccccCC
Q 019392 189 FRLNWATFSGS 199 (341)
Q Consensus 189 ~~~~~~~~~~~ 199 (341)
++|.|+.....
T Consensus 84 l~V~~A~~~~~ 94 (105)
T 1sjq_A 84 IYIQFSNHKEL 94 (105)
T ss_dssp CCBCCCSSSSC
T ss_pred EEEEEcCCCCC
Confidence 99999875543
No 226
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5e-18 Score=125.93 Aligned_cols=80 Identities=18% Similarity=0.259 Sum_probs=72.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCccc
Q 019392 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (341)
Q Consensus 112 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~ 191 (341)
....++|||+|||+++|+++|+++|+.||.|.+|+++.++. |.++|||||+|.+.++|.+|++ +++..+ .++.+.+
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~--~gr~l~V 83 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKY--KETDLLI 83 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCC--TTTTCEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEE--CCEEEEE
Confidence 45678999999999999999999999999999999999986 9999999999999999999998 899998 5677777
Q ss_pred cccc
Q 019392 192 NWAT 195 (341)
Q Consensus 192 ~~~~ 195 (341)
.|..
T Consensus 84 ~~~~ 87 (103)
T 1s79_A 84 LFKD 87 (103)
T ss_dssp EEHH
T ss_pred EEch
Confidence 6654
No 227
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.75 E-value=4.6e-18 Score=128.15 Aligned_cols=86 Identities=20% Similarity=0.412 Sum_probs=79.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcc
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (341)
...+.++|||+|||+++|+++|+++|+.||.|.+|+++.++.+|.++|||||+|.+.++|.+|++.|+|..+ .++.++
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~ 99 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI--MGQTIQ 99 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE--CCcEEE
Confidence 446778999999999999999999999999999999999998999999999999999999999999999999 678888
Q ss_pred cccccccC
Q 019392 191 LNWATFSG 198 (341)
Q Consensus 191 ~~~~~~~~ 198 (341)
|.|+....
T Consensus 100 V~~a~~~~ 107 (110)
T 1oo0_B 100 VDWCFVKG 107 (110)
T ss_dssp EEESEESS
T ss_pred EEEcccCC
Confidence 88887543
No 228
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.75 E-value=1.3e-17 Score=139.07 Aligned_cols=114 Identities=15% Similarity=0.283 Sum_probs=84.8
Q ss_pred CCceEEeCCCCCCCCHHHHHHHhcccC----C-------CeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCee
Q 019392 207 SDLSIFVGDLAPDVTDSILQETFSSKY----P-------SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY 275 (341)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~e~~----G-------~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~ 275 (341)
..++|||+|||+++++++|+++|+ .| | .|.++.+ ++++|||||+|.+.++|.+|| .|||..
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~-~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~ 74 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFN-AQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGII 74 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHH-HHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHH-HHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCE
Confidence 457999999999999999999996 99 4 4555554 456899999999999999999 899999
Q ss_pred ecCccEEEEecCCCCCCCccccccchhhhcCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCC
Q 019392 276 CSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVR 340 (341)
Q Consensus 276 i~g~~i~v~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t 340 (341)
|.|+.|+|.++..+........... ...............++|||+|||.++|
T Consensus 75 ~~g~~i~v~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~l~v~nl~~~~~ 127 (198)
T 2yh0_A 75 FQGQSLKIRRPHDYQPLPGMSENPS------------VYVPGVVSTVVPDSAHKLFIGGLPNYLN 127 (198)
T ss_dssp ETTEEEEEECCCCCCCCCCSSSCSS------------CCCTTSSCCCSSCCCCEEEEECCCTTCC
T ss_pred EcCceEEEeCCCCCCCCCCCcCCCc------------CCCCCCccCCCCCCCCEEEEeCCCCCCC
Confidence 9999999999887654321110000 0000111122335679999999999987
No 229
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.75 E-value=1.1e-18 Score=129.78 Aligned_cols=82 Identities=27% Similarity=0.519 Sum_probs=75.8
Q ss_pred CCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEec
Q 019392 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (341)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a 286 (341)
..++|||+|||+++++++|+++|+ .||.|.+|+|+.++ +++++|||||+|.+.++|.+|++ ++..++|+.|.|.++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFA-RYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHG-GGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-hCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 457999999999999999999996 99999999999997 89999999999999999999997 999999999999999
Q ss_pred CCCCCC
Q 019392 287 TPKKAS 292 (341)
Q Consensus 287 ~~k~~~ 292 (341)
.++...
T Consensus 84 ~~~~~~ 89 (102)
T 2xs2_A 84 IRKQNL 89 (102)
T ss_dssp EECC--
T ss_pred CcCcch
Confidence 877644
No 230
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.75 E-value=1e-18 Score=133.82 Aligned_cols=81 Identities=17% Similarity=0.269 Sum_probs=73.0
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCee--EEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVK--GAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~--~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~ 282 (341)
....++|||+|||+++|+++|+++|+ .| .|. +|+|++|+. |+++|||||+|.+.++|.+||+ +++..|+||.|+
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~-~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~ 114 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFS-GL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIE 114 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTT-TS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHh-cC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEE
Confidence 34567899999999999999999997 99 577 899999976 9999999999999999999996 577999999999
Q ss_pred EEecCCC
Q 019392 283 IDVATPK 289 (341)
Q Consensus 283 v~~a~~k 289 (341)
|.++.++
T Consensus 115 V~~a~~~ 121 (126)
T 2hgm_A 115 VFKSSQE 121 (126)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9988654
No 231
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.6e-17 Score=123.25 Aligned_cols=83 Identities=14% Similarity=0.113 Sum_probs=71.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcc
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (341)
...+.++|||+|||+++++++|+++|+.||.|.+|+++++ ||||||+|.+.++|.+|++.|++..+...++.++
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~ 84 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAF 84 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 4467899999999999999999999999999999999865 4999999999999999999887765333788999
Q ss_pred cccccccCC
Q 019392 191 LNWATFSGS 199 (341)
Q Consensus 191 ~~~~~~~~~ 199 (341)
+.|+.....
T Consensus 85 V~~a~~~~~ 93 (104)
T 1wex_A 85 FNYSTSKRI 93 (104)
T ss_dssp EEECSSSSC
T ss_pred EEEccCccc
Confidence 999876543
No 232
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.6e-18 Score=124.67 Aligned_cols=79 Identities=28% Similarity=0.500 Sum_probs=70.9
Q ss_pred CCCceEEeCCCCCCCCHHHHHHHhcccCCC-eeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCC-eeecCccEEE
Q 019392 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPS-VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG-VYCSSRPMRI 283 (341)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~-v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~-~~i~g~~i~v 283 (341)
...++|||+|||+++++++|+++|+ .||. |..+.+. ++|||||+|.+.++|.+|++.||| ..|+|+.|+|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFG-DRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHH-HTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHH-HcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 4567999999999999999999996 9999 6666653 468999999999999999999999 9999999999
Q ss_pred EecCCCCCC
Q 019392 284 DVATPKKAS 292 (341)
Q Consensus 284 ~~a~~k~~~ 292 (341)
+|++++...
T Consensus 78 ~~a~~~~~~ 86 (93)
T 2cqh_A 78 DYSVSKKLR 86 (93)
T ss_dssp EECCCCCCC
T ss_pred EEccCcccc
Confidence 999987655
No 233
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.74 E-value=4.3e-18 Score=139.11 Aligned_cols=84 Identities=29% Similarity=0.442 Sum_probs=78.9
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~ 284 (341)
....++|||+|||+++++++|+++|+ .||.|.+|.|+.++ ++.++|||||+|.+.++|.+||+.|||..|+|+.|+|.
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~-~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFA-EFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHH-HTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34568999999999999999999997 99999999999997 89999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 019392 285 VATPKK 290 (341)
Q Consensus 285 ~a~~k~ 290 (341)
|+....
T Consensus 163 ~a~~~~ 168 (177)
T 2f3j_A 163 LVASQI 168 (177)
T ss_dssp EESSGG
T ss_pred EecCCC
Confidence 998754
No 234
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.74 E-value=6.8e-18 Score=137.56 Aligned_cols=94 Identities=18% Similarity=0.423 Sum_probs=81.0
Q ss_pred CCceEEeCCCCCCCCHHHHHHHhcccC----C-------CeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCee
Q 019392 207 SDLSIFVGDLAPDVTDSILQETFSSKY----P-------SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY 275 (341)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~e~~----G-------~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~ 275 (341)
+.++|||+|||+++|+++|+++|+ .| | .|.++++. +++|||||+|.+.++|.+|+ .||+..
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~-~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~ 74 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFN-AQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGII 74 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHH-HHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCE
T ss_pred cccEEEEcCCCcccCHHHHHHHHH-HHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcE
Confidence 457999999999999999999997 99 6 67777664 35789999999999999999 999999
Q ss_pred ecCccEEEEecCCCCCCCccccccchhhhcCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCC
Q 019392 276 CSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVR 340 (341)
Q Consensus 276 i~g~~i~v~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t 340 (341)
+.|+.|+|.++...... ...++|||+|||.++|
T Consensus 75 ~~g~~i~v~~~~~~~~~--------------------------------~~~~~l~v~nlp~~~t 107 (172)
T 2g4b_A 75 FQGQSLKIRRPHDYQPL--------------------------------PGAHKLFIGGLPNYLN 107 (172)
T ss_dssp ETTEECEEECCSSCCCC--------------------------------TTTTCEEEECCCTTCC
T ss_pred ecCceeeecCCcccCCC--------------------------------CCCCEEEEEcCCCcCC
Confidence 99999999987654432 1368999999999987
No 235
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.74 E-value=9.7e-18 Score=146.20 Aligned_cols=91 Identities=29% Similarity=0.480 Sum_probs=82.9
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~ 284 (341)
....++|||+|||+++|+++|+++|+ .||.|.+|+|.+ ++|||||+|.+.++|.+|+..|||..|.|+.|+|.
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 91 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFE-RYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIR 91 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTG-GGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHH-hcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEee
Confidence 44567999999999999999999996 999999999864 36899999999999999999999999999999999
Q ss_pred ecCCCCCCCccccccchhhhcCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCC
Q 019392 285 VATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVR 340 (341)
Q Consensus 285 ~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t 340 (341)
++.+ .++|||+|||.++|
T Consensus 92 ~a~~--------------------------------------~~~l~v~nl~~~~t 109 (261)
T 3sde_A 92 FATH--------------------------------------GAALTVKNLSPVVS 109 (261)
T ss_dssp ECCC--------------------------------------SSEEEEESCCTTCC
T ss_pred eccc--------------------------------------CCcccccCCCCCCC
Confidence 9763 35899999999987
No 236
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=2.3e-17 Score=125.07 Aligned_cols=84 Identities=24% Similarity=0.408 Sum_probs=76.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcc
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (341)
.....++|||+|||+++++++|+++|..||.|.+|+|+.++ +++++|||||+|.+.++|.+|++.|++..| .++.++
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 87 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLL--FDRPMH 87 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEe--CCCEEE
Confidence 44678899999999999999999999999999999999998 599999999999999999999999999999 677888
Q ss_pred ccccccc
Q 019392 191 LNWATFS 197 (341)
Q Consensus 191 ~~~~~~~ 197 (341)
|.++...
T Consensus 88 v~~a~~~ 94 (114)
T 2do0_A 88 VKMDERA 94 (114)
T ss_dssp EEECSCC
T ss_pred EEEcccC
Confidence 8887643
No 237
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.74 E-value=5.5e-18 Score=135.46 Aligned_cols=82 Identities=24% Similarity=0.444 Sum_probs=74.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcC--CcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcc
Q 019392 113 DETKTIWIGDLFHWMDETFLHNCFSHTG--QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (341)
Q Consensus 113 ~~~~~l~v~nLp~~~te~~l~~~f~~~G--~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (341)
...++|||+|||+++|+++|+++|+.|| .|.+|+|+.|+.+|+++|||||+|.+.++|.+||+.|+|..| .++.|+
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~--~Gr~l~ 130 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVL--NGEKVD 130 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEE--TTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE--CCeEeE
Confidence 4678999999999999999999999999 999999999999999999999999999999999999999999 678888
Q ss_pred cccccc
Q 019392 191 LNWATF 196 (341)
Q Consensus 191 ~~~~~~ 196 (341)
|.++..
T Consensus 131 V~~a~~ 136 (156)
T 3n9u_C 131 VRPATR 136 (156)
T ss_dssp EEECCH
T ss_pred EEEcCC
Confidence 887753
No 238
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.74 E-value=2.7e-17 Score=119.72 Aligned_cols=83 Identities=19% Similarity=0.319 Sum_probs=75.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCccc
Q 019392 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (341)
Q Consensus 112 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~ 191 (341)
....++|||+|||+++++++|+++|+.||.|.+|++..+ +++++|||||+|.+.++|.+|++.|++..+ .++.+++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~--~g~~l~v 80 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKL--SGREIDV 80 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCB--TTBCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEE
Confidence 357789999999999999999999999999999999984 788999999999999999999999999999 6778888
Q ss_pred ccccccC
Q 019392 192 NWATFSG 198 (341)
Q Consensus 192 ~~~~~~~ 198 (341)
.|+....
T Consensus 81 ~~a~~~~ 87 (92)
T 2dgv_A 81 RIDRNAS 87 (92)
T ss_dssp EECSCCS
T ss_pred EEcCCCC
Confidence 8876543
No 239
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=4.1e-18 Score=128.48 Aligned_cols=77 Identities=19% Similarity=0.182 Sum_probs=71.0
Q ss_pred CCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEec
Q 019392 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (341)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a 286 (341)
..++|||+|||+++++++|+++|+ .||.|.+|.|+. ++|||||+|.+.++|.+||+.|||..|+|+.|+|.|+
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~-~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFS-RFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHH-TTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 356999999999999999999997 999999998863 5689999999999999999999999999999999999
Q ss_pred CCCC
Q 019392 287 TPKK 290 (341)
Q Consensus 287 ~~k~ 290 (341)
....
T Consensus 82 ~~~~ 85 (111)
T 1whx_A 82 PIGV 85 (111)
T ss_dssp ETTT
T ss_pred CCCc
Confidence 7754
No 240
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=4.9e-18 Score=125.10 Aligned_cols=83 Identities=13% Similarity=0.120 Sum_probs=72.2
Q ss_pred CCCCCCCeEEEcCCCC-CCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCC
Q 019392 110 FTNDETKTIWIGDLFH-WMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188 (341)
Q Consensus 110 ~~~~~~~~l~v~nLp~-~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~ 188 (341)
....+.++|||+|||+ ++|+++|+++|+.||.|.+|+|++++ +||||+|++.++|..|++.|++......++.
T Consensus 10 ~~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k------g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 83 (102)
T 1x4d_A 10 GRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI------NEAFIEMATTEDAQAAVDYYTTTPALVFGKP 83 (102)
T ss_dssp CCCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS------SCEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred CCCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC------CEEEEEECCHHHHHHHHHHHcCCCceECCcE
Confidence 3456789999999999 99999999999999999999998764 8999999999999999999987542227889
Q ss_pred cccccccccC
Q 019392 189 FRLNWATFSG 198 (341)
Q Consensus 189 ~~~~~~~~~~ 198 (341)
++|.|+....
T Consensus 84 l~V~~a~~~~ 93 (102)
T 1x4d_A 84 VRVHLSQKYK 93 (102)
T ss_dssp CEEEEECCCT
T ss_pred EEEEECCCCC
Confidence 9999987543
No 241
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.74 E-value=8.4e-18 Score=121.32 Aligned_cols=76 Identities=16% Similarity=0.237 Sum_probs=70.3
Q ss_pred CCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEec
Q 019392 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (341)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a 286 (341)
..++|||+|||+++++++|+++|+ .| .|.+|+|. +++|||||+|.+.++|.+|++.|||..++|+.|+|+|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~-~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLK-DY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTC-SS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHh-hC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 467899999999999999999996 99 99999884 57899999999999999999999999999999999998
Q ss_pred CCCC
Q 019392 287 TPKK 290 (341)
Q Consensus 287 ~~k~ 290 (341)
..+.
T Consensus 76 ~~~~ 79 (88)
T 1wg1_A 76 PTDA 79 (88)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 7654
No 242
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.8e-17 Score=123.28 Aligned_cols=87 Identities=24% Similarity=0.310 Sum_probs=76.9
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCC
Q 019392 109 NFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188 (341)
Q Consensus 109 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~ 188 (341)
.......++|||+|||+++++++|+++|+.||.|.+|+++.++.+|+++|||||+|.+.++|.+||+ ++..+ .++.
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~--~g~~ 84 (103)
T 2cqg_A 9 KRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMI--DGRW 84 (103)
T ss_dssp SCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEE--TTEE
T ss_pred CCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCee--CCeE
Confidence 3455678899999999999999999999999999999999999899999999999999999999998 45566 6778
Q ss_pred cccccccccCC
Q 019392 189 FRLNWATFSGS 199 (341)
Q Consensus 189 ~~~~~~~~~~~ 199 (341)
+++.|+.....
T Consensus 85 l~v~~a~~~~~ 95 (103)
T 2cqg_A 85 CDCKLPNSKQS 95 (103)
T ss_dssp EEEECCCTTCC
T ss_pred EEEEecCCCCc
Confidence 88888876543
No 243
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.7e-18 Score=127.32 Aligned_cols=84 Identities=23% Similarity=0.517 Sum_probs=77.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCccc
Q 019392 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (341)
Q Consensus 112 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~ 191 (341)
....++|||+|||+++++++|+++|+.||.|.+|+++.++.+|.++|||||+|.+.++|.+|++.|++..+ .++.+++
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v 82 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREF--SGRALRV 82 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSC--SSSCBEE
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCee--CCcEEEE
Confidence 34678999999999999999999999999999999999998999999999999999999999999999999 6778888
Q ss_pred cccccc
Q 019392 192 NWATFS 197 (341)
Q Consensus 192 ~~~~~~ 197 (341)
.|+...
T Consensus 83 ~~a~~~ 88 (104)
T 1p1t_A 83 DNAASE 88 (104)
T ss_dssp EETTCT
T ss_pred EeCCCc
Confidence 887643
No 244
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.73 E-value=6.8e-18 Score=121.54 Aligned_cols=81 Identities=25% Similarity=0.432 Sum_probs=72.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcc
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (341)
.....++|||+|||+++++++|+++|+.||.|.+|+++.++.+|+++|||||+|.+.++|.+|++ +++..+ .++.++
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~--~g~~i~ 83 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRL--DGRVID 83 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEE--TTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEE--CCEEEE
Confidence 45688999999999999999999999999999999999999899999999999999999999996 577777 566666
Q ss_pred cccc
Q 019392 191 LNWA 194 (341)
Q Consensus 191 ~~~~ 194 (341)
+.++
T Consensus 84 v~~A 87 (87)
T 3s7r_A 84 PKKA 87 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 6553
No 245
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.73 E-value=4.4e-17 Score=125.48 Aligned_cols=84 Identities=19% Similarity=0.314 Sum_probs=77.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcc
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (341)
.....++|||+|||+++++++|+++|+.||.|.+|++..++ +|+++|||||+|.+.++|.+|++.|++..+ .++.++
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~ 107 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPL--DGRPMD 107 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEES--SSCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEE--CCcEEE
Confidence 45677899999999999999999999999999999999998 899999999999999999999999999999 678888
Q ss_pred ccccccc
Q 019392 191 LNWATFS 197 (341)
Q Consensus 191 ~~~~~~~ 197 (341)
|.|+...
T Consensus 108 V~~a~~~ 114 (124)
T 2kt5_A 108 IQLVASQ 114 (124)
T ss_dssp EEEECCT
T ss_pred EEEeCCC
Confidence 8888754
No 246
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3e-17 Score=120.68 Aligned_cols=79 Identities=18% Similarity=0.344 Sum_probs=71.9
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~ 284 (341)
....++|||+|| ++++++|+++|+ .||.|.+|+|. +++|||||+|.+.++|.+||+.||+..|+|+.|+|.
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~-~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 82 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFS-PFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 82 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHT-TTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHh-hCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 346689999996 899999999996 99999999984 467899999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 019392 285 VATPKKAS 292 (341)
Q Consensus 285 ~a~~k~~~ 292 (341)
|+.++...
T Consensus 83 ~a~~~~~~ 90 (97)
T 1x5p_A 83 IARKQPML 90 (97)
T ss_dssp CCSSCCCC
T ss_pred ECCCCCCC
Confidence 99887655
No 247
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.73 E-value=2.5e-18 Score=126.04 Aligned_cols=81 Identities=12% Similarity=0.155 Sum_probs=73.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcccc
Q 019392 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (341)
Q Consensus 113 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (341)
...++|||+|||+++|+++|+++|+.||.|.+++++.++.+++++|||||+|.+.++|++|++.|++..+ .++.+++.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~gr~l~v~ 90 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI--GSRKVKLS 90 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeE--CCcEEEEE
Confidence 4568999999999999999999999999999999999988999999999999999999999999999999 66777777
Q ss_pred ccc
Q 019392 193 WAT 195 (341)
Q Consensus 193 ~~~ 195 (341)
++.
T Consensus 91 ~a~ 93 (95)
T 2ek1_A 91 GPS 93 (95)
T ss_dssp CCC
T ss_pred ecc
Confidence 654
No 248
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.73 E-value=2e-17 Score=126.50 Aligned_cols=77 Identities=22% Similarity=0.333 Sum_probs=70.3
Q ss_pred ceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccE-EEEEeCCHHHHHHHHHHhCCeeecC--ccEEEEe
Q 019392 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGY-GFVRFGDENERSRAMTEMNGVYCSS--RPMRIDV 285 (341)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~-afV~F~~~~~A~~Al~~l~~~~i~g--~~i~v~~ 285 (341)
..|||+||++.+|+++|+++|+ +||.|.+|+|+.+ .+|| |||+|.+.++|.+|++.|||..|.| +.|+|.|
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs-~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ 102 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFS-KFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 102 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHT-TSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEE
T ss_pred EEEEECCCCCCCCHHHHHHHHh-CcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEe
Confidence 4688999999999999999997 9999999998864 3578 9999999999999999999999988 9999999
Q ss_pred cCCCCC
Q 019392 286 ATPKKA 291 (341)
Q Consensus 286 a~~k~~ 291 (341)
++++.-
T Consensus 103 ak~~~l 108 (130)
T 3zzy_A 103 SKLTSL 108 (130)
T ss_dssp CSCSSC
T ss_pred cCCCce
Confidence 998753
No 249
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.73 E-value=1.8e-17 Score=128.09 Aligned_cols=86 Identities=21% Similarity=0.448 Sum_probs=79.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcc
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (341)
...+.++|||+|||+++|+++|+++|+.||.|.+|.|+.++.++.++|||||+|.+.++|.+|++.|++..| .++.|+
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 95 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL--MGQPIS 95 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBS--SSSBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCee--CCeEEE
Confidence 445678999999999999999999999999999999999998999999999999999999999999999999 678888
Q ss_pred cccccccC
Q 019392 191 LNWATFSG 198 (341)
Q Consensus 191 ~~~~~~~~ 198 (341)
|.|+....
T Consensus 96 v~~a~~~~ 103 (126)
T 3ex7_B 96 VDWCFVRG 103 (126)
T ss_dssp EEESEESS
T ss_pred EEEecCCC
Confidence 88887544
No 250
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=122.74 Aligned_cols=80 Identities=15% Similarity=0.267 Sum_probs=72.6
Q ss_pred CCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEE-EEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEE
Q 019392 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAK-VIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (341)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~-i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~ 284 (341)
...++|||+|||+++++++|+++|+ .||.|.+|+ |+.++.++ .|||+|.+.++|.+|++.|||..|+|+.|+|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 87 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLV-QYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVA 87 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHH-HHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHH-hcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3467999999999999999999997 999999994 88776543 49999999999999999999999999999999
Q ss_pred ecCCCC
Q 019392 285 VATPKK 290 (341)
Q Consensus 285 ~a~~k~ 290 (341)
++.++.
T Consensus 88 ~a~~~~ 93 (96)
T 2e44_A 88 YIPDEM 93 (96)
T ss_dssp ECCCCC
T ss_pred EcCccc
Confidence 999874
No 251
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.73 E-value=1.1e-17 Score=120.92 Aligned_cols=80 Identities=19% Similarity=0.387 Sum_probs=75.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCccccc
Q 019392 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (341)
Q Consensus 114 ~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~ 193 (341)
+.++|||+|||+++|+++|+++|+.||.|.+|++..++.+++++|||||+|.+.++|.+|+ .+++..+ .++.+++.+
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~--~g~~l~V~~ 81 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLF--RGRQIKVIP 81 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEE--TTEECEEEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEE--CCcEEEEEE
Confidence 4689999999999999999999999999999999999989999999999999999999999 8999999 678888888
Q ss_pred ccc
Q 019392 194 ATF 196 (341)
Q Consensus 194 ~~~ 196 (341)
+..
T Consensus 82 a~~ 84 (89)
T 3ucg_A 82 KRT 84 (89)
T ss_dssp TTT
T ss_pred ccC
Confidence 764
No 252
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.73 E-value=7.1e-18 Score=126.76 Aligned_cols=85 Identities=25% Similarity=0.349 Sum_probs=72.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCc
Q 019392 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (341)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~ 189 (341)
......++|||+|||+++|+++|+++|+.||.|.+|+++.++.+|+++|||||+|.+.++|.+|++.+ +..+ .++.+
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l--~g~~l 96 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHEL--DSKTI 96 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEE--TTEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcC--CCEEE
Confidence 45567899999999999999999999999999999999999989999999999999999999999875 4667 67788
Q ss_pred cccccccc
Q 019392 190 RLNWATFS 197 (341)
Q Consensus 190 ~~~~~~~~ 197 (341)
++.++...
T Consensus 97 ~V~~a~~~ 104 (109)
T 2rs2_A 97 DPKVAFPR 104 (109)
T ss_dssp EEEECCCC
T ss_pred EEEEccCC
Confidence 88887654
No 253
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.73 E-value=6.8e-18 Score=117.93 Aligned_cols=75 Identities=24% Similarity=0.333 Sum_probs=69.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcccccc
Q 019392 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194 (341)
Q Consensus 117 ~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~~ 194 (341)
+|||+|||+++++++|+++|+.||.|.+|+++.++.+|+++|||||+|.+.++|++|++ +++..+ .++.+++.|+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~--~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEI--NNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCS--SSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEE--CCEEEEEEeC
Confidence 59999999999999999999999999999999999899999999999999999999997 999999 5667777653
No 254
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.73 E-value=1.5e-17 Score=124.67 Aligned_cols=82 Identities=20% Similarity=0.341 Sum_probs=76.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcc
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (341)
.....++|||+|||+.+|+++|+++|+.||.|.+|+++.++ +|+++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 101 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPL--DGRPMN 101 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEe--CCcEEE
Confidence 44678999999999999999999999999999999999998 999999999999999999999999999999 677888
Q ss_pred ccccc
Q 019392 191 LNWAT 195 (341)
Q Consensus 191 ~~~~~ 195 (341)
|.++.
T Consensus 102 V~~a~ 106 (107)
T 3ulh_A 102 IQLVT 106 (107)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 87764
No 255
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.72 E-value=6.9e-18 Score=124.84 Aligned_cols=83 Identities=18% Similarity=0.304 Sum_probs=72.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecC-CCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCc
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNK-QTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~-~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~ 189 (341)
.....++|||+|||+++++++|+++|+.|| |.+|+++.++ .+|+++|||||+|.+.++|.+|+ .|++..+ .++.+
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~--~g~~l 90 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL--GNRRI 90 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCB--TTBCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEE--CCeEE
Confidence 446789999999999999999999999999 9999999998 68999999999999999999999 8999999 67778
Q ss_pred cccccccc
Q 019392 190 RLNWATFS 197 (341)
Q Consensus 190 ~~~~~~~~ 197 (341)
++.++...
T Consensus 91 ~V~~a~~~ 98 (100)
T 2j76_E 91 RVDVADQA 98 (100)
T ss_dssp CCEECCCS
T ss_pred EEEeccCC
Confidence 88887643
No 256
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=6e-17 Score=122.81 Aligned_cols=84 Identities=25% Similarity=0.515 Sum_probs=75.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCC------
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPN------ 184 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~------ 184 (341)
.....++|||+|||+++|+++|+++|+.||.|.+|+++.++ ++.++|||||+|.+.++|.+|++.|||..+.+
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 44577899999999999999999999999999999999998 89999999999999999999999999999854
Q ss_pred CCCCccccccc
Q 019392 185 TDQPFRLNWAT 195 (341)
Q Consensus 185 ~~~~~~~~~~~ 195 (341)
.++++++.|+.
T Consensus 100 ~~~~l~v~~a~ 110 (114)
T 1x5o_A 100 PTEPLLCKFSG 110 (114)
T ss_dssp CSSCBEEEECC
T ss_pred CCCceeEEccC
Confidence 34567777765
No 257
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.6e-17 Score=122.52 Aligned_cols=82 Identities=18% Similarity=0.286 Sum_probs=71.5
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhC--CCCCCCCC
Q 019392 109 NFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYS--GSLMPNTD 186 (341)
Q Consensus 109 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~--~~~~~~~~ 186 (341)
.....+.++|||+|||+++|+++|+++|+.||.|.+|+++++ +|||||+|.+.++|.+|++.|+ +..+ .+
T Consensus 9 ~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~--~G 80 (101)
T 2cq1_A 9 KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHL--RN 80 (101)
T ss_dssp CCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEE--TT
T ss_pred CccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceE--CC
Confidence 345567899999999999999999999999999999999875 4999999999999999999775 5556 78
Q ss_pred CCcccccccccC
Q 019392 187 QPFRLNWATFSG 198 (341)
Q Consensus 187 ~~~~~~~~~~~~ 198 (341)
+.++|.|+....
T Consensus 81 r~l~V~~a~~~~ 92 (101)
T 2cq1_A 81 QPIYIQYSNHKE 92 (101)
T ss_dssp EECEEEECSCSS
T ss_pred cEEEEEEcCccc
Confidence 899999987543
No 258
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.9e-17 Score=122.37 Aligned_cols=82 Identities=20% Similarity=0.188 Sum_probs=72.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEE-EEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCc
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVN-VKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~-i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~ 189 (341)
.....++|||+|||+++|+++|+++|+.||.|.+ |+|+.+ .+|+++|||||+|.+.++|.+||+. ++..+ .++.|
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~--~gr~i 86 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERI--GHRYI 86 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCS--SSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-Ccchh--CCcEE
Confidence 3456789999999999999999999999999988 888888 6899999999999999999999986 99888 56678
Q ss_pred ccccccc
Q 019392 190 RLNWATF 196 (341)
Q Consensus 190 ~~~~~~~ 196 (341)
++.++..
T Consensus 87 ~v~~~~~ 93 (104)
T 1wg5_A 87 EIFKSSR 93 (104)
T ss_dssp EEEEECT
T ss_pred EEEECCH
Confidence 8777653
No 259
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1.9e-17 Score=120.95 Aligned_cols=79 Identities=20% Similarity=0.358 Sum_probs=70.8
Q ss_pred CCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEec
Q 019392 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (341)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a 286 (341)
..++|||+|||+++++++|+++|+ .||.|.+| +.++.+++ ||||+|.+.++|.+||+ ||+..|+|+.|+|+++
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~-~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFL-AFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGG-GTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHH-hcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 456999999999999999999996 99999987 66666665 99999999999999998 9999999999999998
Q ss_pred CCCCCC
Q 019392 287 TPKKAS 292 (341)
Q Consensus 287 ~~k~~~ 292 (341)
.++...
T Consensus 80 ~~~~~~ 85 (94)
T 2e5g_A 80 EQKEFQ 85 (94)
T ss_dssp CCSCCC
T ss_pred CcCCCC
Confidence 876544
No 260
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.1e-17 Score=122.47 Aligned_cols=82 Identities=17% Similarity=0.148 Sum_probs=72.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcc
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (341)
.....++|||+|||+++|+++|+++|+.||.+ +|+|+.++ +|+++|||||+|.+.++|++||+ +++..| .++.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~--~gr~i~ 85 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANM--QHRYVE 85 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCS--SSSCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeE--CCcEEE
Confidence 34667899999999999999999999999955 99999998 89999999999999999999995 799988 566777
Q ss_pred ccccccc
Q 019392 191 LNWATFS 197 (341)
Q Consensus 191 ~~~~~~~ 197 (341)
|.++...
T Consensus 86 V~~~~~~ 92 (102)
T 1wez_A 86 LFLNSTA 92 (102)
T ss_dssp EEEECCC
T ss_pred EEECCCC
Confidence 7776543
No 261
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.72 E-value=1e-17 Score=122.13 Aligned_cols=81 Identities=17% Similarity=0.187 Sum_probs=71.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcc
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (341)
...++++|||+|||+++|+++|+++|++||.|.+|+++++ ||||||+|++.++|.+|++.|++..+.-.++.++
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 4467899999999999999999999999999999999864 4899999999999999999999886433788999
Q ss_pred ccccccc
Q 019392 191 LNWATFS 197 (341)
Q Consensus 191 ~~~~~~~ 197 (341)
+.|+..+
T Consensus 91 V~~S~~k 97 (100)
T 3r27_A 91 VNYSTSQ 97 (100)
T ss_dssp EEECSCS
T ss_pred EEecccc
Confidence 9988653
No 262
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.72 E-value=1.7e-17 Score=130.66 Aligned_cols=82 Identities=22% Similarity=0.446 Sum_probs=75.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcc
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (341)
.....++|||+|||.++|+++|+++|+.||.|.+++++.++.+++++|||||+|.+.++|.+|++.|++..| .++.++
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 136 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL--FGRTIR 136 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEE--TTEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEE--CCEEEE
Confidence 446789999999999999999999999999999999999998999999999999999999999999999998 567777
Q ss_pred cccc
Q 019392 191 LNWA 194 (341)
Q Consensus 191 ~~~~ 194 (341)
+.|+
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 7664
No 263
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.72 E-value=1e-17 Score=130.86 Aligned_cols=86 Identities=21% Similarity=0.417 Sum_probs=79.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcc
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (341)
.....++|||+|||+++|+++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|++|++.|++..| .++.|+
T Consensus 43 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i--~g~~l~ 120 (135)
T 2lea_A 43 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL--DGRELR 120 (135)
T ss_dssp SGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCS--SSSCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE--CCEEEE
Confidence 456788999999999999999999999999999999999988999999999999999999999999999999 678888
Q ss_pred cccccccC
Q 019392 191 LNWATFSG 198 (341)
Q Consensus 191 ~~~~~~~~ 198 (341)
|.|+....
T Consensus 121 V~~a~~~~ 128 (135)
T 2lea_A 121 VQMARYGR 128 (135)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 88887543
No 264
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.2e-17 Score=117.11 Aligned_cols=75 Identities=15% Similarity=0.194 Sum_probs=66.9
Q ss_pred CCce-EEeCCCCCCCCHHH----HHHHhcccC-CCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCcc
Q 019392 207 SDLS-IFVGDLAPDVTDSI----LQETFSSKY-PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP 280 (341)
Q Consensus 207 ~~~~-l~v~nlp~~~t~~~----l~~~F~e~~-G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~ 280 (341)
+..+ |||+|||+.+++++ |+++|+ .| |.|.+| ++ |+|||+|.+.++|.+|++.|+|+.+.||.
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~-~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSD-NCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHH-TTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHH-HcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 3445 99999999999988 558996 99 599988 33 89999999999999999999999999999
Q ss_pred EEEEecCCCCCC
Q 019392 281 MRIDVATPKKAS 292 (341)
Q Consensus 281 i~v~~a~~k~~~ 292 (341)
|+|.||+.+.+.
T Consensus 76 i~v~~A~~~sd~ 87 (96)
T 2diu_A 76 IIVSFTPKNREL 87 (96)
T ss_dssp CEEESSCCSCCC
T ss_pred EEEEecCCCcce
Confidence 999999988765
No 265
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.72 E-value=1.3e-17 Score=120.24 Aligned_cols=81 Identities=22% Similarity=0.356 Sum_probs=74.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCC-ccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcccc
Q 019392 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQ-SEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (341)
Q Consensus 114 ~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~-~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (341)
..++|||+|||+++|+++|+++|+.||.|.+|+++.+..++. ++|||||+|.+.++|.+|++.|+|..+ .++.+++.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~ 80 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQI--DGQEITAT 80 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeE--CCeEEEEE
Confidence 568999999999999999999999999999999999887665 899999999999999999999999999 67788888
Q ss_pred cccc
Q 019392 193 WATF 196 (341)
Q Consensus 193 ~~~~ 196 (341)
++..
T Consensus 81 ~a~~ 84 (88)
T 4a8x_A 81 AVLA 84 (88)
T ss_dssp EECC
T ss_pred ECCC
Confidence 8754
No 266
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=7.4e-17 Score=121.27 Aligned_cols=83 Identities=16% Similarity=0.274 Sum_probs=74.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcc
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (341)
.....++|||+|||+++|+++|+++|+.||.|.+|++..+ +.+++||||+|.+.++|.+|++.|++..| .++.|+
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~ 92 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDY--DGYRLR 92 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEE--CCeEEE
Confidence 4567899999999999999999999999999999999654 45789999999999999999999999999 678889
Q ss_pred cccccccC
Q 019392 191 LNWATFSG 198 (341)
Q Consensus 191 ~~~~~~~~ 198 (341)
|.|+....
T Consensus 93 V~~a~~~~ 100 (109)
T 1x4a_A 93 VEFPRSGR 100 (109)
T ss_dssp EECCCCCC
T ss_pred EEEcccCC
Confidence 98887554
No 267
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.72 E-value=3e-18 Score=135.44 Aligned_cols=84 Identities=25% Similarity=0.480 Sum_probs=74.1
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEE--------EEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeee
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGA--------KVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC 276 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v--------~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i 276 (341)
..+.++|||+|||+++|+++|+++|+ .||.|.++ ++. .+++++|||||+|.+.++|.+||+.|||..|
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~-~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~ 117 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFG-RYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVL 117 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHG-GGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-HhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEe
Confidence 34667999999999999999999997 99999874 333 4688999999999999999999999999999
Q ss_pred cCccEEEEecCCCCCC
Q 019392 277 SSRPMRIDVATPKKAS 292 (341)
Q Consensus 277 ~g~~i~v~~a~~k~~~ 292 (341)
.|+.|+|.|+++....
T Consensus 118 ~g~~l~V~~a~~~~~~ 133 (143)
T 3egn_A 118 FGKPMVVQFARSARPK 133 (143)
T ss_dssp TTEECEEEECCCSCC-
T ss_pred CCcEEEEEECCCCCCc
Confidence 9999999999876544
No 268
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.72 E-value=3.1e-17 Score=131.63 Aligned_cols=86 Identities=26% Similarity=0.469 Sum_probs=79.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcc
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (341)
.....++|||+|||+++|+++|+++|+.||.|.+|+|+.++.++.++|||||+|.+.++|++||+.|++..| .++.|+
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~ 112 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRL--DDRIIR 112 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEE--TTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE--CCeEEE
Confidence 445789999999999999999999999999999999999999999999999999999999999999999999 678899
Q ss_pred cccccccC
Q 019392 191 LNWATFSG 198 (341)
Q Consensus 191 ~~~~~~~~ 198 (341)
|.|+....
T Consensus 113 V~~a~~~~ 120 (156)
T 1h2v_Z 113 TDWDAGFK 120 (156)
T ss_dssp EEEESCCC
T ss_pred EEECCCCC
Confidence 99987543
No 269
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1e-17 Score=125.19 Aligned_cols=80 Identities=21% Similarity=0.289 Sum_probs=70.9
Q ss_pred cCCCceEEe--CCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeee-----c
Q 019392 205 ACSDLSIFV--GDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC-----S 277 (341)
Q Consensus 205 ~~~~~~l~v--~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i-----~ 277 (341)
..+.++||| +||++++++++|+++|+ +||.|.+|.|+. .||||||+|.+.++|++|++.|||+++ .
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~-~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~ 94 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLE-KCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 94 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHH-HHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHH-hcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCC
Confidence 346778999 77999999999999996 999999998763 368999999999999999999999998 6
Q ss_pred CccEEEEecCCCCC
Q 019392 278 SRPMRIDVATPKKA 291 (341)
Q Consensus 278 g~~i~v~~a~~k~~ 291 (341)
|+.|.|.|+.....
T Consensus 95 g~~l~v~~a~~~p~ 108 (114)
T 2cq2_A 95 KITLYLNFVEKVQW 108 (114)
T ss_dssp EEECEEEEESCCCC
T ss_pred CcEEEEEecccCcc
Confidence 89999999886543
No 270
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=7.6e-18 Score=118.31 Aligned_cols=76 Identities=28% Similarity=0.424 Sum_probs=70.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcccccc
Q 019392 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194 (341)
Q Consensus 116 ~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~~ 194 (341)
++|||+|||+++++++|+++|+.||.|.+|++..++.+|+++|||||+|.+.++|.+|++.++ ..+ .++.+++.|+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~--~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HEL--DSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCC--SSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-Ccc--CCEEEEEEec
Confidence 579999999999999999999999999999999999899999999999999999999999888 777 5667777664
No 271
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.2e-17 Score=122.61 Aligned_cols=85 Identities=16% Similarity=0.248 Sum_probs=76.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCC-cEEEEEE-ecCCCCCccceEEEEecCHHHHHHHHHHhC--CCCCCCCCCC
Q 019392 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVI-RNKQTGQSEGYGFVEFYSRAAAEKVLQSYS--GSLMPNTDQP 188 (341)
Q Consensus 113 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~-v~~i~i~-~~~~~g~~~g~afV~f~~~~~A~~Al~~l~--~~~~~~~~~~ 188 (341)
.+.++|||+|||+++|+++|+++|..||. |.+|+++ .++.+|+++|||||+|.+.++|.+|++.|+ +..+ .++.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~--~g~~ 83 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQL--WGHQ 83 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCB--TTBC
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCcee--cCCe
Confidence 56789999999999999999999999998 9999998 788889999999999999999999999996 4778 6788
Q ss_pred cccccccccCC
Q 019392 189 FRLNWATFSGS 199 (341)
Q Consensus 189 ~~~~~~~~~~~ 199 (341)
+++.|+.....
T Consensus 84 l~V~~a~~~~~ 94 (109)
T 2dis_A 84 IAVDWAEPEID 94 (109)
T ss_dssp CEEEESCSSCS
T ss_pred EEEEEcCCCCC
Confidence 89999876543
No 272
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=8.9e-18 Score=127.34 Aligned_cols=82 Identities=15% Similarity=0.126 Sum_probs=74.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCc-EEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCc
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQV-VNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v-~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~ 189 (341)
.+...++|||+|||+++|+++|+++|+.||.| .+|+|+.++ +|+++|||||+|.+.++|.+||+. ++..| .++.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~--~gr~i 86 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKL--NGREA 86 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEE--TTEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCcc--CCeEE
Confidence 45677899999999999999999999999999 889999998 899999999999999999999986 99888 67788
Q ss_pred ccccccc
Q 019392 190 RLNWATF 196 (341)
Q Consensus 190 ~~~~~~~ 196 (341)
+|.++..
T Consensus 87 ~v~~a~~ 93 (114)
T 2cpy_A 87 FVHVVTL 93 (114)
T ss_dssp EEEEECH
T ss_pred EEEECCH
Confidence 8877764
No 273
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.71 E-value=5.9e-18 Score=122.71 Aligned_cols=79 Identities=24% Similarity=0.456 Sum_probs=72.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCccccccc
Q 019392 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT 195 (341)
Q Consensus 116 ~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~~~ 195 (341)
++|||+|||+++++++|+++|+.||.|.+|+++.++.+|+++|||||+|.+.+ |.+|+..|++..+ .++.+++.++.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~--~g~~l~V~~a~ 78 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDF--MGRTIRVTEAN 78 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCC--SSSSCSEEEC-
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEE--CCeEEEEEEcC
Confidence 68999999999999999999999999999999999989999999999999999 9999999999999 67888888876
Q ss_pred cc
Q 019392 196 FS 197 (341)
Q Consensus 196 ~~ 197 (341)
..
T Consensus 79 ~~ 80 (90)
T 2ki2_A 79 PK 80 (90)
T ss_dssp --
T ss_pred CC
Confidence 54
No 274
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=7.5e-18 Score=127.82 Aligned_cols=82 Identities=20% Similarity=0.379 Sum_probs=75.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCccc
Q 019392 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (341)
Q Consensus 112 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~ 191 (341)
....++|||+|||+++++++|+++|+.||.|.+|+|+.++.++.++|||||+|.+.++|.+|| .|++..| .++.|+|
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~--~g~~l~V 98 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRL--LGVPIIV 98 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEE--TTEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEe--CCeEEEE
Confidence 356789999999999999999999999999999999999989999999999999999999999 9999999 6778888
Q ss_pred ccccc
Q 019392 192 NWATF 196 (341)
Q Consensus 192 ~~~~~ 196 (341)
.|+..
T Consensus 99 ~~a~~ 103 (114)
T 2cq4_A 99 QASQA 103 (114)
T ss_dssp EEHHH
T ss_pred EecCC
Confidence 87764
No 275
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.2e-17 Score=120.24 Aligned_cols=81 Identities=12% Similarity=0.131 Sum_probs=73.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCC
Q 019392 112 NDETKTIWIGDLFHWMDETFLH----NCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQ 187 (341)
Q Consensus 112 ~~~~~~l~v~nLp~~~te~~l~----~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~ 187 (341)
..+.++|||+|||+++++++|+ ++|+.||.|.+|+++.++.+ +|||||+|.+.++|.+|++.|||..+ .++
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~--~gr 80 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKI--GSK 80 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEE--TTE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEE--CCe
Confidence 3467899999999999999999 99999999999999998754 79999999999999999999999999 678
Q ss_pred Cccccccccc
Q 019392 188 PFRLNWATFS 197 (341)
Q Consensus 188 ~~~~~~~~~~ 197 (341)
.++|.++...
T Consensus 81 ~l~V~~a~~~ 90 (96)
T 2dgx_A 81 KILVSLATGA 90 (96)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEEcCCC
Confidence 8999888654
No 276
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.9e-17 Score=124.46 Aligned_cols=84 Identities=23% Similarity=0.438 Sum_probs=75.7
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCC
Q 019392 109 NFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188 (341)
Q Consensus 109 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~ 188 (341)
.......++|||+|||.++|+++|+++|+.||.|.+|+++.++ +.++|||||+|.+.++|++|++.|+|..+ .++.
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~--~g~~ 98 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVV--EGRK 98 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEE--TTEE
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEE--CCEE
Confidence 3456788999999999999999999999999999999999985 35889999999999999999999999999 6788
Q ss_pred cccccccc
Q 019392 189 FRLNWATF 196 (341)
Q Consensus 189 ~~~~~~~~ 196 (341)
+++.++..
T Consensus 99 l~V~~a~~ 106 (109)
T 2err_A 99 IEVNNATA 106 (109)
T ss_dssp CEEEECCC
T ss_pred EEEEECCC
Confidence 88888764
No 277
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=6.5e-17 Score=122.18 Aligned_cols=82 Identities=17% Similarity=0.261 Sum_probs=72.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCC--CCCCCCCC
Q 019392 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSG--SLMPNTDQ 187 (341)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~--~~~~~~~~ 187 (341)
....+.++|||+|||+++|+++|+++|+.||.|.+|+|+++ ||||||+|++.++|.+|++.+++ ..+ .++
T Consensus 26 ~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l--~Gr 97 (119)
T 2ad9_A 26 SAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVL--RGQ 97 (119)
T ss_dssp SCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCB--TTB
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceE--CCe
Confidence 34567889999999999999999999999999999999986 49999999999999999998875 466 788
Q ss_pred CcccccccccCC
Q 019392 188 PFRLNWATFSGS 199 (341)
Q Consensus 188 ~~~~~~~~~~~~ 199 (341)
.|+|.|+.....
T Consensus 98 ~l~V~~a~~k~~ 109 (119)
T 2ad9_A 98 PIYIQFSNHKEL 109 (119)
T ss_dssp CCEEEECSSSSC
T ss_pred EEEEEEccCCCC
Confidence 899999875543
No 278
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.71 E-value=2.2e-17 Score=125.30 Aligned_cols=77 Identities=23% Similarity=0.334 Sum_probs=66.7
Q ss_pred CCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCcc-----E
Q 019392 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP-----M 281 (341)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~-----i 281 (341)
..++|||+|||+++++++|+++|+ .||.|.+|.|+.+ |||||+|++.++|.+||+.||+..|+|+. |
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~-~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMR-EAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHG-GGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 457999999999999999999996 9999999999865 79999999999999999999999999998 7
Q ss_pred EEEecCCCCC
Q 019392 282 RIDVATPKKA 291 (341)
Q Consensus 282 ~v~~a~~k~~ 291 (341)
+|..+.++..
T Consensus 87 ~v~~~~~~~~ 96 (115)
T 3beg_B 87 RVKVDGPRSP 96 (115)
T ss_dssp EEEECC----
T ss_pred EeccCCCCCC
Confidence 7777766543
No 279
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=5.9e-17 Score=124.55 Aligned_cols=81 Identities=12% Similarity=0.325 Sum_probs=71.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCC
Q 019392 112 NDETKTIWIGDLFHWMDETFLH----NCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQ 187 (341)
Q Consensus 112 ~~~~~~l~v~nLp~~~te~~l~----~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~ 187 (341)
..+.++|||+|||+.+++++|+ ++|+.||.|.+|.+.. +++++|||||+|.+.++|..|++.|||..+ .++
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l--~gr 100 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPF--QGN 100 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCC--TTS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEe--CCC
Confidence 4567899999999999999876 6999999999988754 578899999999999999999999999999 677
Q ss_pred Cccccccccc
Q 019392 188 PFRLNWATFS 197 (341)
Q Consensus 188 ~~~~~~~~~~ 197 (341)
.++|.|+...
T Consensus 101 ~l~V~~a~~~ 110 (127)
T 2a3j_A 101 PLVITFSETP 110 (127)
T ss_dssp CCEEEECCCC
T ss_pred EEEEEEccCc
Confidence 8999988754
No 280
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=3.7e-17 Score=118.68 Aligned_cols=82 Identities=16% Similarity=0.270 Sum_probs=75.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcc
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (341)
.....++|||+|||+++|+++|+++|+.| .|.+|+++.+ .+|+++|||||+|.+.++|.+|++ +++..+ .++.++
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~--~gr~i~ 80 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYM--GGRYIE 80 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEE--TTEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCcee--CCcEEE
Confidence 34677899999999999999999999999 9999999999 689999999999999999999999 999999 677888
Q ss_pred ccccccc
Q 019392 191 LNWATFS 197 (341)
Q Consensus 191 ~~~~~~~ 197 (341)
+.++...
T Consensus 81 v~~a~~~ 87 (91)
T 2dgw_A 81 VFREKSG 87 (91)
T ss_dssp EEEESSC
T ss_pred EEECCcC
Confidence 8887654
No 281
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.71 E-value=3.5e-17 Score=118.15 Aligned_cols=77 Identities=25% Similarity=0.373 Sum_probs=62.6
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCee--ecCccEE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY--CSSRPMR 282 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~--i~g~~i~ 282 (341)
..+..+|||+|||+++|+++|+++|+ .||.|.+|+|+++ +||||||+|++.++|.+ +++.. +.|+.|.
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~-~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFC-QYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVH 77 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHT-TTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHh-ccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEE
Confidence 34667999999999999999999997 9999999999874 78999999999999984 45544 5699999
Q ss_pred EEecCCCCC
Q 019392 283 IDVATPKKA 291 (341)
Q Consensus 283 v~~a~~k~~ 291 (341)
|.++.++..
T Consensus 78 v~~a~~k~~ 86 (89)
T 3d2w_A 78 ISNAEPKHN 86 (89)
T ss_dssp EEECC----
T ss_pred EEEcCCCCc
Confidence 999988754
No 282
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=2e-17 Score=124.71 Aligned_cols=87 Identities=9% Similarity=0.181 Sum_probs=77.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHH---HHHHhcCCcEEEEEEecCCCC---CccceEEEEecCHHHHHHHHHHhCCCCCC
Q 019392 110 FTNDETKTIWIGDLFHWMDETFLH---NCFSHTGQVVNVKVIRNKQTG---QSEGYGFVEFYSRAAAEKVLQSYSGSLMP 183 (341)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~te~~l~---~~f~~~G~v~~i~i~~~~~~g---~~~g~afV~f~~~~~A~~Al~~l~~~~~~ 183 (341)
......++|||+|||+++++++|+ ++|+.||.|.+|++..++.++ +++|||||+|.+.++|.+|++.||+..|
T Consensus 10 ~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~- 88 (111)
T 2cpi_A 10 VRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVV- 88 (111)
T ss_dssp CCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEE-
T ss_pred ccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEE-
Confidence 345678899999999999999999 999999999999999987644 5669999999999999999999999999
Q ss_pred CCCCCcccccccccC
Q 019392 184 NTDQPFRLNWATFSG 198 (341)
Q Consensus 184 ~~~~~~~~~~~~~~~ 198 (341)
.++.++|.|+....
T Consensus 89 -~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 89 -DGRTLKASLGTTKY 102 (111)
T ss_dssp -TTEEEEEESCCCCS
T ss_pred -CCEEEEEEeccccc
Confidence 67889999987654
No 283
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.71 E-value=5e-17 Score=130.71 Aligned_cols=86 Identities=21% Similarity=0.417 Sum_probs=79.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcc
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (341)
.....++|||+|||+++|+++|+++|+.||.|.+|+++.|+.+|+++|||||+|.+.++|.+|++.|+|..+ .++.++
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 143 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL--DGRELR 143 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEES--SSSEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE--CCeEEE
Confidence 345678999999999999999999999999999999999998999999999999999999999999999999 678899
Q ss_pred cccccccC
Q 019392 191 LNWATFSG 198 (341)
Q Consensus 191 ~~~~~~~~ 198 (341)
|.|+....
T Consensus 144 v~~a~~~~ 151 (158)
T 2kn4_A 144 VQMARYGR 151 (158)
T ss_dssp EEEECCSS
T ss_pred EEECCCCC
Confidence 99987553
No 284
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=6.8e-17 Score=119.24 Aligned_cols=81 Identities=20% Similarity=0.354 Sum_probs=72.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCc
Q 019392 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (341)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~ 189 (341)
....+.++|||+|||+++|+++|+++|+.||.|.+|++.++ +|||||+|.+.++|.+|++.|++..+ .++.+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~--~g~~l 81 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPL--RGKQL 81 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCB--TTBCC
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEe--CCceE
Confidence 44567899999999999999999999999999999999865 49999999999999999999999999 67888
Q ss_pred ccccccccC
Q 019392 190 RLNWATFSG 198 (341)
Q Consensus 190 ~~~~~~~~~ 198 (341)
++.|+....
T Consensus 82 ~v~~a~~~~ 90 (99)
T 2cpj_A 82 RVRFACHSA 90 (99)
T ss_dssp EEEESSCCS
T ss_pred EEEEcCCCC
Confidence 888887543
No 285
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.70 E-value=9.2e-17 Score=119.34 Aligned_cols=83 Identities=14% Similarity=0.227 Sum_probs=73.5
Q ss_pred cCCCceEEeCCCCC-----CCCHHHHHHHhcccCCCeeEEEEEecCCC-CCCccEEEEEeCCHHHHHHHHHHhCCeeecC
Q 019392 205 ACSDLSIFVGDLAP-----DVTDSILQETFSSKYPSVKGAKVIIDSNT-GRTKGYGFVRFGDENERSRAMTEMNGVYCSS 278 (341)
Q Consensus 205 ~~~~~~l~v~nlp~-----~~t~~~l~~~F~e~~G~v~~v~i~~~~~~-~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g 278 (341)
..++++|+|.||.. +-++++|+++|+ +||.|.+|+|++++.+ ++++|||||+|.+.++|.+|++.|||+.++|
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~-~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G 83 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECE-KYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGG 83 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGG-GGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHH-hcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 34677999999963 237899999996 9999999999998654 6899999999999999999999999999999
Q ss_pred ccEEEEecCC
Q 019392 279 RPMRIDVATP 288 (341)
Q Consensus 279 ~~i~v~~a~~ 288 (341)
|.|+|.++..
T Consensus 84 r~i~v~~a~~ 93 (105)
T 2pe8_A 84 RVVKACFYNL 93 (105)
T ss_dssp EECEEEECCH
T ss_pred cEEEEEEcCH
Confidence 9999999865
No 286
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.7e-16 Score=116.60 Aligned_cols=81 Identities=17% Similarity=0.374 Sum_probs=72.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcc
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (341)
...+.++|||+|||+++|+++|+++|+.||.|.+|++..+ +|||||+|.+.++|++|++.|++..+.+.++.++
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 3456789999999999999999999999999999999865 4899999999999999999999999954488899
Q ss_pred ccccccc
Q 019392 191 LNWATFS 197 (341)
Q Consensus 191 ~~~~~~~ 197 (341)
+.|+...
T Consensus 87 V~~a~~~ 93 (97)
T 1why_A 87 VDFAKSG 93 (97)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9998754
No 287
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.70 E-value=1.8e-17 Score=126.37 Aligned_cols=81 Identities=19% Similarity=0.170 Sum_probs=73.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCC---cEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCC
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQ---VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQ 187 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~---v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~ 187 (341)
.....++|||+|||+++|+++|+++|+.||. |.+|+|+.++. |+++|||||+|.+.++|++||+ +++..| .++
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~--~gr 88 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESM--GHR 88 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEE--TTE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeE--CCe
Confidence 3457789999999999999999999999998 89999999986 9999999999999999999998 999988 567
Q ss_pred Cccccccc
Q 019392 188 PFRLNWAT 195 (341)
Q Consensus 188 ~~~~~~~~ 195 (341)
.|+|.++.
T Consensus 89 ~i~V~~a~ 96 (118)
T 2db1_A 89 YIEVFKSH 96 (118)
T ss_dssp EEEEEEEC
T ss_pred EEEEEECC
Confidence 77776654
No 288
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.70 E-value=1.9e-16 Score=120.59 Aligned_cols=76 Identities=17% Similarity=0.228 Sum_probs=68.1
Q ss_pred ceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccE-EEEEeCCHHHHHHHHHHhCCeeecC--ccEEEEe
Q 019392 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGY-GFVRFGDENERSRAMTEMNGVYCSS--RPMRIDV 285 (341)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~-afV~F~~~~~A~~Al~~l~~~~i~g--~~i~v~~ 285 (341)
..|||+||++.+++++|+++|+ .||.|.+|+|+.. .|| |||+|.+.++|.+|++.|||..|.| +.|+|.|
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs-~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCN-PVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHT-TTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred EEEEEcCcCCCCCHHHHHHHHH-hcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 3467999999999999999997 9999999998652 276 9999999999999999999999987 6899999
Q ss_pred cCCCCC
Q 019392 286 ATPKKA 291 (341)
Q Consensus 286 a~~k~~ 291 (341)
++++..
T Consensus 99 Ak~~~l 104 (124)
T 2e5i_A 99 ARPTRL 104 (124)
T ss_dssp CSCSCC
T ss_pred ecCCcc
Confidence 998753
No 289
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.70 E-value=3.3e-17 Score=116.24 Aligned_cols=73 Identities=25% Similarity=0.393 Sum_probs=65.0
Q ss_pred CCeEEEcCCCCCC------CHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCC-
Q 019392 115 TKTIWIGDLFHWM------DETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQ- 187 (341)
Q Consensus 115 ~~~l~v~nLp~~~------te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~- 187 (341)
.++|||+|||+.+ ++++|+++|+.||.|.+|++. +.+|+++|||||+|.+.++|.+|++.|||..+. ++
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~--g~~ 76 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD--KQH 76 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCS--SSS
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccC--Cce
Confidence 3789999999999 779999999999999999987 357899999999999999999999999999994 44
Q ss_pred Cccc
Q 019392 188 PFRL 191 (341)
Q Consensus 188 ~~~~ 191 (341)
.+++
T Consensus 77 ~l~V 80 (81)
T 2krb_A 77 TFRV 80 (81)
T ss_dssp CCCC
T ss_pred eEEe
Confidence 4543
No 290
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.70 E-value=2.4e-17 Score=123.44 Aligned_cols=81 Identities=17% Similarity=0.143 Sum_probs=73.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCC---cEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCC
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQ---VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQ 187 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~---v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~ 187 (341)
.....++|||+|||+++|+++|+++|+.||. |.+|+|+.++. |+++|||||+|.+.++|.+||+ +++..+ .++
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~--~gr 82 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYM--GQR 82 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCS--SSS
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCccee--CCe
Confidence 4467889999999999999999999999998 89999999986 9999999999999999999998 999988 566
Q ss_pred Cccccccc
Q 019392 188 PFRLNWAT 195 (341)
Q Consensus 188 ~~~~~~~~ 195 (341)
.+++.++.
T Consensus 83 ~i~V~~a~ 90 (107)
T 2lmi_A 83 YVEVYEIN 90 (107)
T ss_dssp CCCCEECC
T ss_pred EEEEEECC
Confidence 77776654
No 291
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.6e-17 Score=126.36 Aligned_cols=86 Identities=21% Similarity=0.370 Sum_probs=77.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcc
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (341)
.....++|||+|||+++|+++|+++|..||.|.+|+|+.++.+++++|||||+|.+.++|.+||+. ++..| .++.++
T Consensus 23 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~--~g~~l~ 99 (116)
T 1x4b_A 23 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSI--DGRVVE 99 (116)
T ss_dssp HHHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEE--TTEEEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEE--CCEEEE
Confidence 345668999999999999999999999999999999999998999999999999999999999987 88888 678888
Q ss_pred cccccccCC
Q 019392 191 LNWATFSGS 199 (341)
Q Consensus 191 ~~~~~~~~~ 199 (341)
|.++.....
T Consensus 100 V~~a~~~~~ 108 (116)
T 1x4b_A 100 PKRAVAREE 108 (116)
T ss_dssp EECCSSCCC
T ss_pred EEECCCCcc
Confidence 888876543
No 292
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=7.7e-17 Score=119.63 Aligned_cols=85 Identities=25% Similarity=0.496 Sum_probs=75.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCc
Q 019392 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (341)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~ 189 (341)
......++|||+|||+++|+++|+++|+.| .+|+++.++.+++++|||||+|.+.++|.+||+.|++..| .++.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l 84 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI--DGNKV 84 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE--TTEEC
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeE--CCeEE
Confidence 455788999999999999999999999977 4788899988999999999999999999999999999999 67789
Q ss_pred ccccccccCC
Q 019392 190 RLNWATFSGS 199 (341)
Q Consensus 190 ~~~~~~~~~~ 199 (341)
+|.|+.....
T Consensus 85 ~V~~a~~~~~ 94 (102)
T 2fc8_A 85 TLDWAKPKGE 94 (102)
T ss_dssp EEEECCCCCS
T ss_pred EEEEecCCCC
Confidence 9998876543
No 293
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=4.8e-17 Score=120.51 Aligned_cols=83 Identities=30% Similarity=0.409 Sum_probs=73.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCc
Q 019392 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (341)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~ 189 (341)
......++|||+|||+++|+++|+++|+.||.| +++.+ .+++++|||||+|.+.++|.+|++.|++..| .++.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l 83 (101)
T 2fc9_A 10 TWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREI--EGRAI 83 (101)
T ss_dssp CCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEE--TTEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEe--CCeEE
Confidence 355678999999999999999999999999976 56666 5789999999999999999999999999999 67889
Q ss_pred ccccccccC
Q 019392 190 RLNWATFSG 198 (341)
Q Consensus 190 ~~~~~~~~~ 198 (341)
+|.|+....
T Consensus 84 ~v~~a~~~~ 92 (101)
T 2fc9_A 84 RLELQGPRG 92 (101)
T ss_dssp EEEECSSCC
T ss_pred EEEEcCCCC
Confidence 999887654
No 294
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.4e-16 Score=119.46 Aligned_cols=81 Identities=15% Similarity=0.190 Sum_probs=71.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCC---CC
Q 019392 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD---QP 188 (341)
Q Consensus 112 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~---~~ 188 (341)
....++|||+|||+++|+++|+++|..||.|.+|+|+.+ |||||+|.+.++|.+||+.||+..|.+.. +.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 356789999999999999999999999999999999886 89999999999999999999999994422 78
Q ss_pred cccccccccCC
Q 019392 189 FRLNWATFSGS 199 (341)
Q Consensus 189 ~~~~~~~~~~~ 199 (341)
|+|.++.....
T Consensus 85 i~V~~a~~~~~ 95 (108)
T 1x4c_A 85 IRVKVDGPRSP 95 (108)
T ss_dssp EEEEESSCCSC
T ss_pred EEEEeCCCCCC
Confidence 88888876543
No 295
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.69 E-value=2.7e-17 Score=127.89 Aligned_cols=81 Identities=17% Similarity=0.152 Sum_probs=73.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCC---cEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCC
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQ---VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQ 187 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~---v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~ 187 (341)
.....++|||+|||+++|+++|+++|+.||. |.+|+|+.|+. |+++|||||+|.+.++|++||+ +++..| .++
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l--~gr 115 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESM--GHR 115 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEES--SSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEE--CCE
Confidence 3456789999999999999999999999999 89999999986 9999999999999999999998 999998 566
Q ss_pred Cccccccc
Q 019392 188 PFRLNWAT 195 (341)
Q Consensus 188 ~~~~~~~~ 195 (341)
.|+|.++.
T Consensus 116 ~i~V~~a~ 123 (136)
T 2hgl_A 116 YIEVFKSH 123 (136)
T ss_dssp EEEEEECC
T ss_pred EEEEEECC
Confidence 77776653
No 296
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.69 E-value=6.1e-17 Score=124.71 Aligned_cols=82 Identities=15% Similarity=0.373 Sum_probs=75.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcccc
Q 019392 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (341)
Q Consensus 113 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (341)
...++|||+|||+++|+++|+++|+.||.|.+|+++.++.+|.++|||||+|.+.++|.+|+ .|++..| .++.++|.
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~--~g~~l~V~ 110 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVF--RGRTIKVL 110 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEE--TTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeE--CCeEEEEE
Confidence 35689999999999999999999999999999999999889999999999999999999999 7999999 67888888
Q ss_pred ccccc
Q 019392 193 WATFS 197 (341)
Q Consensus 193 ~~~~~ 197 (341)
|+...
T Consensus 111 ~a~~~ 115 (124)
T 2jwn_A 111 PKRTN 115 (124)
T ss_dssp ESSCC
T ss_pred ECCCC
Confidence 87643
No 297
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=2.4e-16 Score=114.17 Aligned_cols=78 Identities=19% Similarity=0.348 Sum_probs=70.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCccc
Q 019392 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (341)
Q Consensus 112 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~ 191 (341)
....++|||+|||+++|+++|+++|+.||.|.+|++. ++||||+|.+.++|.+|++.|++..+ .++.+++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v 74 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKL--HGVNINV 74 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBC--SSCBCEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCcc--CCcEEEE
Confidence 4678999999999999999999999999999999998 38999999999999999999999999 6788899
Q ss_pred ccccccCC
Q 019392 192 NWATFSGS 199 (341)
Q Consensus 192 ~~~~~~~~ 199 (341)
.|+.....
T Consensus 75 ~~a~~~~~ 82 (90)
T 2dnq_A 75 EASKNKSK 82 (90)
T ss_dssp ECSSCCCC
T ss_pred EECCCCCC
Confidence 88876543
No 298
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.69 E-value=1.7e-16 Score=125.96 Aligned_cols=83 Identities=17% Similarity=0.282 Sum_probs=73.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcccc
Q 019392 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (341)
Q Consensus 113 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (341)
....+|||+||++.+|+++|+++|++||.|.+|++..+. ++|||||+|.+.++|++|++.|+|..|.+.++.++|.
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 455679999999999999999999999999999987543 4689999999999999999999999997667899999
Q ss_pred cccccCC
Q 019392 193 WATFSGS 199 (341)
Q Consensus 193 ~~~~~~~ 199 (341)
|++....
T Consensus 120 ~Ak~~~l 126 (164)
T 1sjr_A 120 FSKLTSL 126 (164)
T ss_dssp ECSSSSC
T ss_pred EecCCcc
Confidence 9986543
No 299
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.69 E-value=6.6e-17 Score=113.63 Aligned_cols=73 Identities=12% Similarity=0.215 Sum_probs=65.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCccccc
Q 019392 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (341)
Q Consensus 114 ~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~ 193 (341)
.+..|||+||++.+||++|+++|.+||+|.++++.. ++|||||+|.+.++|.+|++.||+..+ .++.|++++
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l--~gr~I~V~~ 77 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVL--ANTTIFAES 77 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEE--TTEEEEEEC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEE--CCcEEEEEE
Confidence 466899999999999999999999999999999976 469999999999999999999999999 666676655
Q ss_pred c
Q 019392 194 A 194 (341)
Q Consensus 194 ~ 194 (341)
+
T Consensus 78 A 78 (89)
T 2wbr_A 78 P 78 (89)
T ss_dssp C
T ss_pred C
Confidence 4
No 300
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3e-17 Score=126.38 Aligned_cols=83 Identities=18% Similarity=0.221 Sum_probs=73.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcc
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (341)
.....++|||+|||+++|+++|+++|..||.|.++.++.+..+|+++|||||+|.+.++|.+||+ +++..| .++.|+
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~--~gr~i~ 97 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYM--GNRFIQ 97 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCS--TTSCBE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeE--CCcEEE
Confidence 34567899999999999999999999999999987777777799999999999999999999998 999999 667788
Q ss_pred cccccc
Q 019392 191 LNWATF 196 (341)
Q Consensus 191 ~~~~~~ 196 (341)
|.++..
T Consensus 98 V~~a~~ 103 (124)
T 1wel_A 98 VHPITK 103 (124)
T ss_dssp EEEECH
T ss_pred EEECCH
Confidence 877653
No 301
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=7.3e-17 Score=122.26 Aligned_cols=81 Identities=17% Similarity=0.298 Sum_probs=70.0
Q ss_pred CCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCC---CCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEE
Q 019392 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNT---GRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (341)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~---~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~ 282 (341)
...++|||+|||+++++++|+++|+ .||.|. +.++.++.+ |+++|||||+|.+.++|.+||+.|+ .++|+.|.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~-~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFR-RFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTT-TTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHH-hcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 3567999999999999999999996 999999 888888777 7999999999999999999999984 46777777
Q ss_pred EEecCCCC
Q 019392 283 IDVATPKK 290 (341)
Q Consensus 283 v~~a~~k~ 290 (341)
+..+....
T Consensus 82 ~~~~~~~~ 89 (114)
T 2dnl_A 82 CVSSPTIK 89 (114)
T ss_dssp EECCSSSC
T ss_pred eccCCCcC
Confidence 76655443
No 302
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.69 E-value=4.6e-17 Score=138.58 Aligned_cols=80 Identities=21% Similarity=0.404 Sum_probs=74.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcC--CcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCccc
Q 019392 114 ETKTIWIGDLFHWMDETFLHNCFSHTG--QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (341)
Q Consensus 114 ~~~~l~v~nLp~~~te~~l~~~f~~~G--~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~ 191 (341)
..++|||+||++++|+++|+++|+.|| .|++|+|+.|+.+|+++|||||+|.+.++|.+||+.|++..| .++.|+|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~--~Gr~l~V 144 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKREL--HGQNPVV 144 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCB--TTBCCEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeE--CCEEeEE
Confidence 677999999999999999999999999 999999999999999999999999999999999999999999 6777888
Q ss_pred cccc
Q 019392 192 NWAT 195 (341)
Q Consensus 192 ~~~~ 195 (341)
.++.
T Consensus 145 ~~a~ 148 (229)
T 3q2s_C 145 TPVN 148 (229)
T ss_dssp EECC
T ss_pred EECC
Confidence 7765
No 303
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=3.9e-17 Score=122.16 Aligned_cols=79 Identities=20% Similarity=0.264 Sum_probs=69.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCccc
Q 019392 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (341)
Q Consensus 112 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~ 191 (341)
..+.++|||+|||+++|+++|+++|+.| .|.+|+|+.|+. |+++|||||+|.+.++|.+|| .+++..| .++.|+|
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~--~gr~i~V 87 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLM--IQRYVEV 87 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEE--TTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeE--CCeEEEE
Confidence 3456799999999999999999999999 899999999975 999999999999999999999 6899988 5566666
Q ss_pred cccc
Q 019392 192 NWAT 195 (341)
Q Consensus 192 ~~~~ 195 (341)
..+.
T Consensus 88 ~~a~ 91 (109)
T 2dnn_A 88 SPAT 91 (109)
T ss_dssp EECC
T ss_pred EECC
Confidence 5543
No 304
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.68 E-value=3.2e-17 Score=114.46 Aligned_cols=74 Identities=16% Similarity=0.297 Sum_probs=67.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCccccc
Q 019392 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (341)
Q Consensus 117 ~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~ 193 (341)
+|||+|||+++|+++|+++|+.||.|.+|++..++.+|.++|||||+|.+.++|.+|++ +++..+ .++.+++.+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~--~g~~l~v~~ 74 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNV--GLSKCEIKV 74 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCB--TTBCCCEEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeE--CCEEEEEEE
Confidence 69999999999999999999999999999999999899999999999999999999997 488888 556666554
No 305
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1e-16 Score=119.81 Aligned_cols=81 Identities=12% Similarity=0.168 Sum_probs=69.6
Q ss_pred CCCCCCeEEEcCCCCC-CCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCc
Q 019392 111 TNDETKTIWIGDLFHW-MDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~-~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~ 189 (341)
...+.++|||+|||++ +|+++|+++|+.||.|.+|+|+++ +|||||+|.+.++|..|++.|++....-.++.+
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 3567899999999998 999999999999999999999754 499999999999999999988654322278889
Q ss_pred cccccccc
Q 019392 190 RLNWATFS 197 (341)
Q Consensus 190 ~~~~~~~~ 197 (341)
+|.|+...
T Consensus 95 ~V~~a~~~ 102 (112)
T 1x4f_A 95 KVDLSEKY 102 (112)
T ss_dssp EEEEECSC
T ss_pred EEEECccc
Confidence 99998654
No 306
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.68 E-value=2.3e-17 Score=122.27 Aligned_cols=82 Identities=20% Similarity=0.244 Sum_probs=73.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCccc
Q 019392 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (341)
Q Consensus 112 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~ 191 (341)
....++|||+|||+++|+++|+++|+.||.|.+ .++.+..+|+++|||||+|.+.++|.+|++ |++..+ .++.+++
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~--~g~~l~V 89 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKV--FGNEIKL 89 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCB--TTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEE--CCcEEEE
Confidence 456789999999999999999999999999888 667777788999999999999999999998 999999 5788888
Q ss_pred cccccc
Q 019392 192 NWATFS 197 (341)
Q Consensus 192 ~~~~~~ 197 (341)
.++...
T Consensus 90 ~~a~~~ 95 (101)
T 1fj7_A 90 EKPKGR 95 (101)
T ss_dssp ECCSCC
T ss_pred EEcCCC
Confidence 887654
No 307
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.3e-16 Score=114.25 Aligned_cols=76 Identities=22% Similarity=0.463 Sum_probs=68.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHh-CCCCCCCCCCCc
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY-SGSLMPNTDQPF 189 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l-~~~~~~~~~~~~ 189 (341)
.....++|||+|||.++++++|+++|+.||.|.+|++.++ +|||||+|.+.++|.+|++.| ++..+ .++.+
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~--~g~~l 79 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIV--NGRRL 79 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEE--TTEEC
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeE--CCCEE
Confidence 4567789999999999999999999999999999999975 489999999999999999988 99888 56778
Q ss_pred ccccc
Q 019392 190 RLNWA 194 (341)
Q Consensus 190 ~~~~~ 194 (341)
++.|+
T Consensus 80 ~v~~a 84 (85)
T 2ytc_A 80 NVKWG 84 (85)
T ss_dssp CEEEC
T ss_pred EEEec
Confidence 88776
No 308
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=3.7e-16 Score=114.81 Aligned_cols=80 Identities=15% Similarity=0.242 Sum_probs=70.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcc
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (341)
.....++|||+|||+++|+++|+++|+.||.|. ++++.+ +++|||||+|.+.++|.+|++.|++..+ .++.++
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 87 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRL--GTDTLR 87 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCS--SSSCCE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEE--CCcEEE
Confidence 445678999999999999999999999999996 666654 5679999999999999999999999999 667888
Q ss_pred ccccccc
Q 019392 191 LNWATFS 197 (341)
Q Consensus 191 ~~~~~~~ 197 (341)
+.++...
T Consensus 88 V~~a~~~ 94 (97)
T 2e5j_A 88 VALARQQ 94 (97)
T ss_dssp EEECCCC
T ss_pred EEEcCCC
Confidence 8887643
No 309
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.68 E-value=1.1e-16 Score=129.51 Aligned_cols=87 Identities=20% Similarity=0.409 Sum_probs=78.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcc
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (341)
.....++|||+|||+.+++++|+.+|..||.|..|.|+.++.+|.++|||||+|.+.++|.+||+.|++..| .++.|+
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~ 145 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI--MGQTIQ 145 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEE--CCEEEE
Confidence 345678999999999999999999999999999999999999999999999999999999999999999999 678889
Q ss_pred cccccccCC
Q 019392 191 LNWATFSGS 199 (341)
Q Consensus 191 ~~~~~~~~~ 199 (341)
|.|+.....
T Consensus 146 V~~a~~~~~ 154 (165)
T 1rk8_A 146 VDWCFVKGP 154 (165)
T ss_dssp EEESEECC-
T ss_pred EEEecCCCC
Confidence 988876543
No 310
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.68 E-value=8.5e-17 Score=120.02 Aligned_cols=82 Identities=24% Similarity=0.349 Sum_probs=73.0
Q ss_pred CCCCCCeEEEcCCCCCC------CHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCC
Q 019392 111 TNDETKTIWIGDLFHWM------DETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPN 184 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~------te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~ 184 (341)
.....++|||+|||+.+ |+++|+++|+.||.|.+|++. +.+|+++|||||+|.+.++|.+|++.|+|..+
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~-- 86 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKL-- 86 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEEC--
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCccc--
Confidence 34557899999999999 789999999999999999988 35789999999999999999999999999999
Q ss_pred CCC-Ccccccccc
Q 019392 185 TDQ-PFRLNWATF 196 (341)
Q Consensus 185 ~~~-~~~~~~~~~ 196 (341)
.++ .+++.|+..
T Consensus 87 ~g~~~l~V~~a~~ 99 (105)
T 2nlw_A 87 DKQHTFRVNLFTD 99 (105)
T ss_dssp STTCEEEEECSCC
T ss_pred CCCceEEEEEcch
Confidence 566 788888753
No 311
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.68 E-value=1.6e-16 Score=121.41 Aligned_cols=79 Identities=18% Similarity=0.344 Sum_probs=71.2
Q ss_pred cCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEE
Q 019392 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~ 284 (341)
....++|||+|| ++++++|+++|+ .||.|.+|.|. +++|||||+|.+.++|.+||+.|||..|+|+.|+|.
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~-~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFS-PFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHS-TTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHH-ccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 346789999996 799999999996 99999999985 467999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 019392 285 VATPKKAS 292 (341)
Q Consensus 285 ~a~~k~~~ 292 (341)
|+.++...
T Consensus 107 ~a~~~~~~ 114 (121)
T 2bz2_A 107 IARKQPML 114 (121)
T ss_dssp ECCSSCC-
T ss_pred EeCCCCCC
Confidence 99987544
No 312
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.68 E-value=1.8e-16 Score=131.35 Aligned_cols=121 Identities=11% Similarity=0.013 Sum_probs=88.2
Q ss_pred CHHHHHHHHHHh--CCCCCCCCCCCcccccccccCCCC--ccccCCCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEE
Q 019392 166 SRAAAEKVLQSY--SGSLMPNTDQPFRLNWATFSGSDR--RTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKV 241 (341)
Q Consensus 166 ~~~~A~~Al~~l--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i 241 (341)
+.+.+..|++.. ....+...+..++.....+.+... .......++|||+|||+++++++|+++|+ .||.|.+|+|
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~-~~G~v~~v~i 141 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLE-DKGQVLNIQM 141 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHT-TSCCEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHh-cCCCEEEEEE
Confidence 567777888765 333343333333222111100000 00122457999999999999999999997 9999999999
Q ss_pred EecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEecCCC
Q 019392 242 IIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289 (341)
Q Consensus 242 ~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a~~k 289 (341)
+++. +++++|||||+|++.++|.+|++.++ ..++|+.|+|.++..-
T Consensus 142 ~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 142 RRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDDY 187 (193)
T ss_dssp EECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTTC
T ss_pred EECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHHH
Confidence 9985 58999999999999999999997665 5999999999997654
No 313
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.68 E-value=1.2e-16 Score=119.74 Aligned_cols=79 Identities=20% Similarity=0.401 Sum_probs=70.3
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCC
Q 019392 109 NFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188 (341)
Q Consensus 109 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~ 188 (341)
.......++|||+|||+++|+++|+++|+.||.|.+|+++ +|||||+|.+.++|.+|++.|+|..+ .++.
T Consensus 25 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~--~g~~ 94 (108)
T 2jvo_A 25 QEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSF--ANQP 94 (108)
T ss_dssp ---CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEE--TTEE
T ss_pred cCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEE--CCeE
Confidence 3455778999999999999999999999999999999998 48999999999999999999999999 6788
Q ss_pred ccccccccc
Q 019392 189 FRLNWATFS 197 (341)
Q Consensus 189 ~~~~~~~~~ 197 (341)
+++.|+...
T Consensus 95 l~V~~a~~~ 103 (108)
T 2jvo_A 95 LEVVYSKLP 103 (108)
T ss_dssp CEEESCSCC
T ss_pred EEEEEecCC
Confidence 888887654
No 314
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=5e-17 Score=117.24 Aligned_cols=78 Identities=27% Similarity=0.407 Sum_probs=67.3
Q ss_pred CCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEec
Q 019392 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (341)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a 286 (341)
..++|||+|||+++++++|+++|+ .||.|.+|+|+++ ++|||||+|++.++|++|+.. ...+.|+.|+|.++
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFS-QYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNA 75 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHST-TTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHH-HcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEec
Confidence 567999999999999999999996 9999999998864 789999999999999865321 35568999999999
Q ss_pred CCCCCC
Q 019392 287 TPKKAS 292 (341)
Q Consensus 287 ~~k~~~ 292 (341)
.++...
T Consensus 76 ~~~~~~ 81 (88)
T 1wf0_A 76 EPKHNS 81 (88)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 987655
No 315
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=7e-17 Score=122.64 Aligned_cols=87 Identities=15% Similarity=0.217 Sum_probs=72.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcc
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (341)
...+.++|||+|||+++|+++|+++|..||.|.++.+..+..+++++|||||+|.+.++|.+|++.|++..+ .++.++
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l~ 98 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKL--YGKILV 98 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBC--SSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEe--CCcEEE
Confidence 345778999999999999999999999999984433322222788999999999999999999999999999 678899
Q ss_pred cccccccCC
Q 019392 191 LNWATFSGS 199 (341)
Q Consensus 191 ~~~~~~~~~ 199 (341)
|.|+.....
T Consensus 99 v~~a~~~~~ 107 (115)
T 2cpx_A 99 IEFGKNKKQ 107 (115)
T ss_dssp EEECCCCSC
T ss_pred EEEccCCCC
Confidence 998876543
No 316
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.67 E-value=1.1e-16 Score=115.10 Aligned_cols=71 Identities=21% Similarity=0.471 Sum_probs=65.7
Q ss_pred CCceEEeCCCCCCCCHHHHHHHhcccC----C-------CeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCee
Q 019392 207 SDLSIFVGDLAPDVTDSILQETFSSKY----P-------SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY 275 (341)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~e~~----G-------~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~ 275 (341)
..++|||+|||+++++++|+++|+ .| | .|.++++.++ +|||||+|.+.++|.+|+ .|||..
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~-~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFN-AQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHH-HHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-HHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 467999999999999999999996 99 8 8999988754 689999999999999999 999999
Q ss_pred ecCccEEEEe
Q 019392 276 CSSRPMRIDV 285 (341)
Q Consensus 276 i~g~~i~v~~ 285 (341)
++|+.|+|+.
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999974
No 317
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.66 E-value=8.1e-17 Score=120.66 Aligned_cols=81 Identities=12% Similarity=0.045 Sum_probs=70.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcC-CcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCc
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTG-QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G-~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~ 189 (341)
.+...++|||+|||+++|+++|+++|+.|| .|..+++..+ +++|||||+|.+.++|++|++.|||..+ .++.|
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l--~Gr~i 97 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEF--RGSVI 97 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEE--TTEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEE--CCeEE
Confidence 345678999999999999999999999999 8999988542 4679999999999999999999999999 67788
Q ss_pred cccccccc
Q 019392 190 RLNWATFS 197 (341)
Q Consensus 190 ~~~~~~~~ 197 (341)
+|.++...
T Consensus 98 ~V~~a~~~ 105 (111)
T 2jvr_A 98 TVERDDNP 105 (111)
T ss_dssp EEEESCC-
T ss_pred EEEECCCC
Confidence 88887644
No 318
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.66 E-value=4.4e-16 Score=115.75 Aligned_cols=78 Identities=22% Similarity=0.426 Sum_probs=70.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCccc
Q 019392 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (341)
Q Consensus 112 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~ 191 (341)
....++|||+|||+++|+++|+++|+.||.|.+|++++ +||||+|.+.++|.+|++.|++..| .++.++|
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v 77 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDL--EGENIEI 77 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEE--TTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCcc--CCCEEEE
Confidence 35678999999999999999999999999999999873 6999999999999999999999999 6788899
Q ss_pred ccccccCC
Q 019392 192 NWATFSGS 199 (341)
Q Consensus 192 ~~~~~~~~ 199 (341)
.|+.....
T Consensus 78 ~~a~~~~~ 85 (103)
T 2dgu_A 78 VFAKPPDQ 85 (103)
T ss_dssp EECCCCCC
T ss_pred EEcCCCcc
Confidence 88876543
No 319
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.66 E-value=2.6e-16 Score=116.52 Aligned_cols=76 Identities=18% Similarity=0.361 Sum_probs=68.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcccc
Q 019392 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (341)
Q Consensus 113 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (341)
...++|||+|||.++++++|+++|+.||.|.+|++.+ ++|||||+|.+.++|.+|++.|++..+ .++.+++.
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V~ 96 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPF--QGRNLRTG 96 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEE--TTEECCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeE--CCeEEEEE
Confidence 4568999999999999999999999999999999984 459999999999999999999999999 67888888
Q ss_pred cccc
Q 019392 193 WATF 196 (341)
Q Consensus 193 ~~~~ 196 (341)
|+..
T Consensus 97 ~a~~ 100 (101)
T 2la4_A 97 WGKE 100 (101)
T ss_dssp BCCC
T ss_pred eccC
Confidence 8753
No 320
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.66 E-value=1.7e-16 Score=121.51 Aligned_cols=80 Identities=18% Similarity=0.209 Sum_probs=69.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcE--EEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCC
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVV--NVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~--~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~ 188 (341)
.....++|||+|||+++|+++|+++|+.| .|+ +|+|+.|+. |+++|||||+|.+.++|.+||+ +++..| .++.
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l--~gR~ 112 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERI--GHRY 112 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCB--TTBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEE--CCEE
Confidence 34567899999999999999999999999 677 899999986 9999999999999999999997 477888 5667
Q ss_pred ccccccc
Q 019392 189 FRLNWAT 195 (341)
Q Consensus 189 ~~~~~~~ 195 (341)
|+|.++.
T Consensus 113 I~V~~a~ 119 (126)
T 2hgm_A 113 IEVFKSS 119 (126)
T ss_dssp CCCEEEC
T ss_pred EEEEECC
Confidence 7776654
No 321
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.9e-16 Score=117.28 Aligned_cols=80 Identities=21% Similarity=0.480 Sum_probs=72.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCccc
Q 019392 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (341)
Q Consensus 112 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~ 191 (341)
....++|||+|||.++++++|+++|+.||.|.+|+++.+ +|||||+|.+.++|.+|++.|++..| .++.++|
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v 93 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTI--EGHVVKC 93 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEE--TTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEE--CCcEEEE
Confidence 356789999999999999999999999999999999987 49999999999999999999999999 6788999
Q ss_pred ccccccCC
Q 019392 192 NWATFSGS 199 (341)
Q Consensus 192 ~~~~~~~~ 199 (341)
.|+.....
T Consensus 94 ~~a~~~~~ 101 (109)
T 1x4g_A 94 YWGKESPD 101 (109)
T ss_dssp ECCCCCCS
T ss_pred EecCCCCC
Confidence 99876543
No 322
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.66 E-value=6.8e-17 Score=126.05 Aligned_cols=81 Identities=20% Similarity=0.157 Sum_probs=70.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcc
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (341)
.....++|||+|||+++|+++|+++|+.|| |++|+|+.|+. |+++|||||+|.+.++|++|| .+++..| .++.|+
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l--~gR~i~ 116 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANM--QHRYIE 116 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSS--SSCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEE--CCEEEE
Confidence 446778999999999999999999999999 67999999985 999999999999999999999 7899999 556777
Q ss_pred cccccc
Q 019392 191 LNWATF 196 (341)
Q Consensus 191 ~~~~~~ 196 (341)
|.++..
T Consensus 117 V~~a~~ 122 (139)
T 2hgn_A 117 LFLNST 122 (139)
T ss_dssp CEECCC
T ss_pred EEECCC
Confidence 766654
No 323
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.66 E-value=8.1e-16 Score=117.15 Aligned_cols=79 Identities=16% Similarity=0.214 Sum_probs=69.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccce-EEEEecCHHHHHHHHHHhCCCCCCCCCCCcccc
Q 019392 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGY-GFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (341)
Q Consensus 114 ~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~-afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (341)
....|||+||++.+|+++|+++|+.||.|.+|+|... .|| |||+|.+.++|..|++.|+|..|.+..+.++|.
T Consensus 24 ~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~ 97 (124)
T 2e5i_A 24 KVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE 97 (124)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEE
T ss_pred cEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEE
Confidence 3445789999999999999999999999999999752 286 999999999999999999999997766789999
Q ss_pred cccccC
Q 019392 193 WATFSG 198 (341)
Q Consensus 193 ~~~~~~ 198 (341)
++....
T Consensus 98 ~Ak~~~ 103 (124)
T 2e5i_A 98 YARPTR 103 (124)
T ss_dssp CCSCSC
T ss_pred EecCCc
Confidence 987654
No 324
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.65 E-value=4.9e-16 Score=114.05 Aligned_cols=76 Identities=16% Similarity=0.327 Sum_probs=68.4
Q ss_pred CCCCCCeEEEcCCCC-CCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCc
Q 019392 111 TNDETKTIWIGDLFH-WMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~-~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~ 189 (341)
...+.++|||+|||+ ++++++|+++|+.||.|.+|++. +|||||+|.+.++|.+|++.|+|..+ .++.+
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l 87 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMN--FGKKL 87 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEE--TTEEC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEE--CCEEE
Confidence 456789999999998 99999999999999999999983 58999999999999999999999999 67788
Q ss_pred ccccccc
Q 019392 190 RLNWATF 196 (341)
Q Consensus 190 ~~~~~~~ 196 (341)
++.++..
T Consensus 88 ~V~~a~~ 94 (97)
T 2xnq_A 88 ILEVSSS 94 (97)
T ss_dssp EEEECCC
T ss_pred EEEecCC
Confidence 8888754
No 325
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.46 E-value=9.2e-18 Score=127.72 Aligned_cols=86 Identities=19% Similarity=0.383 Sum_probs=78.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEE--------EEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCC
Q 019392 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVN--------VKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMP 183 (341)
Q Consensus 112 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~--------i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~ 183 (341)
..+.++|||+|||+++++++|+++|+.||.|.+ |+++.++.+++++|||||+|.+.++|.+|++.|++..+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~- 82 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF- 82 (116)
Confidence 457789999999999999999999999999999 99999988999999999999999999999999999999
Q ss_pred CCCCCcccccccccCC
Q 019392 184 NTDQPFRLNWATFSGS 199 (341)
Q Consensus 184 ~~~~~~~~~~~~~~~~ 199 (341)
.++.++|.|+.....
T Consensus 83 -~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 83 -SGNPIKVSFATRRAD 97 (116)
Confidence 677888888876543
No 326
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.65 E-value=5.7e-16 Score=113.54 Aligned_cols=78 Identities=15% Similarity=0.315 Sum_probs=68.4
Q ss_pred CCCCCCeEEEcCCCC-CCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCc
Q 019392 111 TNDETKTIWIGDLFH-WMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~-~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~ 189 (341)
...+.++|||+|||+ ++|+++|+++|+.||.|.+|++. +|||||+|.+.++|.+|++.|++..+ .++.+
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l 75 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMN--FGKKL 75 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSC--BTTTB
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCee--CCcEE
Confidence 346788999999998 99999999999999999999984 48999999999999999999999999 57788
Q ss_pred ccccccccC
Q 019392 190 RLNWATFSG 198 (341)
Q Consensus 190 ~~~~~~~~~ 198 (341)
+|.|+....
T Consensus 76 ~V~~a~~~~ 84 (96)
T 2kvi_A 76 ILEVSSSNA 84 (96)
T ss_dssp CEEEEECCC
T ss_pred EEEEcCcCC
Confidence 888876543
No 327
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=7.1e-16 Score=113.02 Aligned_cols=80 Identities=14% Similarity=0.209 Sum_probs=70.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEE-EEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcc
Q 019392 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNV-KVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (341)
Q Consensus 112 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i-~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (341)
....++|||+|||+++|+++|+++|+.||.|.+| .++.++.+ +.|||+|.+.++|.+|++.|++..+ .++.++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l~ 85 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQL--ENFTLK 85 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBC--SSCBCE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEE--CCcEEE
Confidence 3467899999999999999999999999999999 48887655 3499999999999999999999999 678888
Q ss_pred ccccccc
Q 019392 191 LNWATFS 197 (341)
Q Consensus 191 ~~~~~~~ 197 (341)
+.++...
T Consensus 86 V~~a~~~ 92 (96)
T 2e44_A 86 VAYIPDE 92 (96)
T ss_dssp EEECCCC
T ss_pred EEEcCcc
Confidence 8887654
No 328
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.65 E-value=5.1e-16 Score=126.76 Aligned_cols=83 Identities=19% Similarity=0.317 Sum_probs=76.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcc
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (341)
.....++|||+|||+.+++++|+++|+.||.|.+|.|+.++ ++.++|||||+|.+.++|.+|++.|++..| .++.|+
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l--~Gr~l~ 160 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPL--DGRPMD 160 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBC--SSSBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEE--CCEEEE
Confidence 44567899999999999999999999999999999999998 899999999999999999999999999999 668888
Q ss_pred cccccc
Q 019392 191 LNWATF 196 (341)
Q Consensus 191 ~~~~~~ 196 (341)
|.|+..
T Consensus 161 V~~a~~ 166 (177)
T 2f3j_A 161 IQLVAS 166 (177)
T ss_dssp EEEESS
T ss_pred EEEecC
Confidence 888764
No 329
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=8e-16 Score=111.35 Aligned_cols=78 Identities=19% Similarity=0.368 Sum_probs=70.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcc
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (341)
.....++|||+|||+++|+++|+++|+.||.|.+|++++ +||||+|.+.++|.+|++.|++..+ .++.++
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 74 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEV--KGKRIN 74 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEE--CCcEEE
Confidence 446788999999999999999999999999999999984 4999999999999999999999999 678888
Q ss_pred cccccccC
Q 019392 191 LNWATFSG 198 (341)
Q Consensus 191 ~~~~~~~~ 198 (341)
+.|+....
T Consensus 75 v~~a~~~~ 82 (90)
T 2dnp_A 75 VELSTKGQ 82 (90)
T ss_dssp EEESCCCC
T ss_pred EEECCCCC
Confidence 88887553
No 330
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1.7e-16 Score=121.17 Aligned_cols=78 Identities=14% Similarity=0.191 Sum_probs=68.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCc----EEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCC
Q 019392 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQV----VNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188 (341)
Q Consensus 113 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~v----~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~ 188 (341)
...++|||+|||+++|+++|+++|+.||.| .+|+|+.+. +|+++|||||+|.+.++|.+||+. ++..| .++.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l--~gR~ 96 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLL--GKRY 96 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEES--SSCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCee--CCeE
Confidence 567899999999999999999999999975 689999985 899999999999999999999985 88888 4556
Q ss_pred cccccc
Q 019392 189 FRLNWA 194 (341)
Q Consensus 189 ~~~~~~ 194 (341)
|+|..+
T Consensus 97 i~V~~a 102 (123)
T 2dha_A 97 IELFRS 102 (123)
T ss_dssp ECCEEE
T ss_pred EEEEEC
Confidence 665544
No 331
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=2.5e-16 Score=118.60 Aligned_cols=76 Identities=21% Similarity=0.237 Sum_probs=69.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcccc
Q 019392 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (341)
Q Consensus 113 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (341)
...++|||+|||+++++++|+++|+.||.|.+|.+.. +++||||+|.+.++|.+|++.|||..+ .++.++|.
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V~ 79 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKF--HHVPLYLE 79 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBS--SSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEE--CCeEEEEE
Confidence 4568999999999999999999999999999998875 348999999999999999999999999 67888998
Q ss_pred cccc
Q 019392 193 WATF 196 (341)
Q Consensus 193 ~~~~ 196 (341)
|+..
T Consensus 80 ~a~~ 83 (111)
T 1whx_A 80 WAPI 83 (111)
T ss_dssp EEET
T ss_pred ECCC
Confidence 8864
No 332
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.64 E-value=9.8e-17 Score=119.07 Aligned_cols=81 Identities=32% Similarity=0.535 Sum_probs=72.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCccc
Q 019392 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (341)
Q Consensus 112 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~ 191 (341)
....++|||+|||+++++++|+++|+.||.|.+|+++.++ +|+++|||||+|.+.++|.+|++ ++..+ .++.+.+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~--~g~~l~v 80 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINF--HGKKLKL 80 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEE--TTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeE--CCEEEEE
Confidence 3466899999999999999999999999999999999998 99999999999999999999997 77777 5667777
Q ss_pred cccccc
Q 019392 192 NWATFS 197 (341)
Q Consensus 192 ~~~~~~ 197 (341)
.++...
T Consensus 81 ~~a~~~ 86 (102)
T 2xs2_A 81 GPAIRK 86 (102)
T ss_dssp EEEEEC
T ss_pred EECCcC
Confidence 766543
No 333
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.3e-15 Score=112.28 Aligned_cols=79 Identities=24% Similarity=0.425 Sum_probs=70.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHhc--CCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCC
Q 019392 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHT--GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQ 187 (341)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~--G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~ 187 (341)
......++|||+|||+++|+++|+++|+.| |.|.+|++. +|||||+|.+.++|.+|++.|++..+ .++
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~--~g~ 79 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVL--DGS 79 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEE--TTE
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEe--CCc
Confidence 344678899999999999999999999999 899988775 37999999999999999999999999 678
Q ss_pred CcccccccccC
Q 019392 188 PFRLNWATFSG 198 (341)
Q Consensus 188 ~~~~~~~~~~~ 198 (341)
.+++.|+....
T Consensus 80 ~l~v~~a~~~~ 90 (99)
T 2cpd_A 80 PIEVTLAKPVD 90 (99)
T ss_dssp EEEEECCCCCC
T ss_pred EEEEEECCCCC
Confidence 89999887654
No 334
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=7.1e-16 Score=112.11 Aligned_cols=78 Identities=13% Similarity=0.282 Sum_probs=70.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcc
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (341)
.....++|||+|||+++|+++|+++|+.||.|.+|++.+ +||||+|.+.++|.+|++.|++..+ .++.++
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 75 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEF--QGKRMH 75 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEE--TTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCee--CCcEEE
Confidence 456789999999999999999999999999999999974 4999999999999999999999999 678889
Q ss_pred cccccccC
Q 019392 191 LNWATFSG 198 (341)
Q Consensus 191 ~~~~~~~~ 198 (341)
+.|+....
T Consensus 76 V~~a~~~~ 83 (92)
T 2dgt_A 76 VQLSTSRL 83 (92)
T ss_dssp EEESSCCC
T ss_pred EEEccCCC
Confidence 98887543
No 335
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.64 E-value=1.7e-16 Score=116.64 Aligned_cols=81 Identities=28% Similarity=0.442 Sum_probs=72.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCC
Q 019392 112 NDETKTIWIGDLFHWMDETFLH----NCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQ 187 (341)
Q Consensus 112 ~~~~~~l~v~nLp~~~te~~l~----~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~ 187 (341)
..+.++|||+|||+++++++|+ ++|+.||.|.+|++.+ +|.++|||||+|.+.++|.+|++.|+|..+ .++
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~ 79 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPF--YDK 79 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEE--TTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEE--CCc
Confidence 4578899999999999999999 9999999999998874 467789999999999999999999999999 678
Q ss_pred Cccccccccc
Q 019392 188 PFRLNWATFS 197 (341)
Q Consensus 188 ~~~~~~~~~~ 197 (341)
.+++.|+...
T Consensus 80 ~l~v~~a~~~ 89 (97)
T 1nu4_A 80 PMRIQYAKTD 89 (97)
T ss_dssp ECEEEECSSC
T ss_pred EEEEEEccCC
Confidence 8899888654
No 336
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.64 E-value=9.3e-16 Score=115.38 Aligned_cols=77 Identities=22% Similarity=0.403 Sum_probs=69.2
Q ss_pred CCCCCCeEEEcCCCCC-CCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCc
Q 019392 111 TNDETKTIWIGDLFHW-MDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~-~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~ 189 (341)
.....++|||+|||++ +|+++|+++|+.||.|.+|++ ++|||||+|.+.++|.+|++.|++..+ .++.+
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l 92 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVL--AGQTL 92 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEE--TTEEC
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEE--CCeEE
Confidence 3455689999999999 999999999999999999998 358999999999999999999999999 67888
Q ss_pred cccccccc
Q 019392 190 RLNWATFS 197 (341)
Q Consensus 190 ~~~~~~~~ 197 (341)
+|.|+...
T Consensus 93 ~V~~a~~~ 100 (110)
T 1wf1_A 93 DINMAGEP 100 (110)
T ss_dssp CEEESCCC
T ss_pred EEEECCCC
Confidence 88888643
No 337
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.64 E-value=5e-16 Score=118.75 Aligned_cols=85 Identities=16% Similarity=0.323 Sum_probs=73.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccce-EEEEecCHHHHHHHHHHhCCCCCCCCCCCccc
Q 019392 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGY-GFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (341)
Q Consensus 113 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~-afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~ 191 (341)
.....|||+||++.+|+++|+++|++||.|.+|++..+. +|| |||+|.+.++|.+|++.|||..|.+..+.+++
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 445568899999999999999999999999999988643 477 99999999999999999999999766688999
Q ss_pred ccccccCCCCc
Q 019392 192 NWATFSGSDRR 202 (341)
Q Consensus 192 ~~~~~~~~~~~ 202 (341)
.|++.....-+
T Consensus 101 ~~ak~~~l~v~ 111 (130)
T 3zzy_A 101 DFSKLTSLNVK 111 (130)
T ss_dssp EECSCSSCCCC
T ss_pred EecCCCceeEE
Confidence 99986644333
No 338
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.64 E-value=1.1e-15 Score=121.68 Aligned_cols=80 Identities=23% Similarity=0.326 Sum_probs=72.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcc
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (341)
.....++|||+|||+++|+++|+++|+.||.|.+|+++.+ ++|||||+|.+.++|.+|++.|+|..+ .++.++
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 141 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTL--CGCRVR 141 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCS--SSSCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEE--CCeEEE
Confidence 4467899999999999999999999999999999999886 469999999999999999999999999 678888
Q ss_pred ccccccc
Q 019392 191 LNWATFS 197 (341)
Q Consensus 191 ~~~~~~~ 197 (341)
|.|+...
T Consensus 142 v~~a~~~ 148 (150)
T 2i2y_A 142 VELSNGE 148 (150)
T ss_dssp EEECCCC
T ss_pred EEEcCCC
Confidence 8887643
No 339
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=2e-15 Score=110.14 Aligned_cols=78 Identities=21% Similarity=0.296 Sum_probs=67.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCccc
Q 019392 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (341)
Q Consensus 112 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~ 191 (341)
....++|||+|||+++|+++|+++|+.||.|.+| +.++.+|+ ||||+|.+.++|.+|++ |++..| .++.++|
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~--~g~~l~V 76 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSL--GGHRLRV 76 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEE--TTEECCC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEE--CCEEEEE
Confidence 3467899999999999999999999999999987 56655655 99999999999999999 999999 6677888
Q ss_pred cccccc
Q 019392 192 NWATFS 197 (341)
Q Consensus 192 ~~~~~~ 197 (341)
.++...
T Consensus 77 ~~a~~~ 82 (94)
T 2e5g_A 77 RPREQK 82 (94)
T ss_dssp BCSCCS
T ss_pred EECCcC
Confidence 777544
No 340
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.6e-15 Score=113.25 Aligned_cols=84 Identities=13% Similarity=0.235 Sum_probs=71.7
Q ss_pred ccCCCceEEeCCCCCCCC-----------HHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhC
Q 019392 204 EACSDLSIFVGDLAPDVT-----------DSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 272 (341)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t-----------~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~ 272 (341)
...++++|+|.||..... +++|+++|+ +||.|.+|.| .++ .++|||||+|.+.++|.+|++.||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~-~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECS-KFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGG-GTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHST
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHH-ccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcC
Confidence 345678999999944332 589999996 9999999966 553 379999999999999999999999
Q ss_pred CeeecCccEEEEecCCCCCC
Q 019392 273 GVYCSSRPMRIDVATPKKAS 292 (341)
Q Consensus 273 ~~~i~g~~i~v~~a~~k~~~ 292 (341)
|..|+|+.|+|.|+.++...
T Consensus 86 g~~~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 86 GRWFGGRQITAQAWDGTTDY 105 (112)
T ss_dssp TCEETTEECEEEECCSCCCS
T ss_pred CCEECCcEEEEEEeCCCCCc
Confidence 99999999999999887654
No 341
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=6.9e-16 Score=115.29 Aligned_cols=78 Identities=15% Similarity=0.258 Sum_probs=66.6
Q ss_pred CCCCCeEEE--cCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCC---CCCC
Q 019392 112 NDETKTIWI--GDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLM---PNTD 186 (341)
Q Consensus 112 ~~~~~~l~v--~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~---~~~~ 186 (341)
..++++||| +||++++|+++|+++|++||.|.+|.+..+ +|||||+|.+.++|++|++.|||..+ .+.+
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 356789999 779999999999999999999999988643 59999999999999999999999876 2346
Q ss_pred CCccccccc
Q 019392 187 QPFRLNWAT 195 (341)
Q Consensus 187 ~~~~~~~~~ 195 (341)
+++.+.++.
T Consensus 96 ~~l~v~~a~ 104 (114)
T 2cq2_A 96 ITLYLNFVE 104 (114)
T ss_dssp EECEEEEES
T ss_pred cEEEEEecc
Confidence 667766655
No 342
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=3.8e-15 Score=105.65 Aligned_cols=76 Identities=14% Similarity=0.205 Sum_probs=65.8
Q ss_pred CCCCe-EEEcCCCCCCCHHH----HHHHHHhc-CCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCC
Q 019392 113 DETKT-IWIGDLFHWMDETF----LHNCFSHT-GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186 (341)
Q Consensus 113 ~~~~~-l~v~nLp~~~te~~----l~~~f~~~-G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~ 186 (341)
.++.| |||+|||+++++++ |+++|+.| |+|.+| ++ |+|||.|.+.++|.+|++.|+|..+ .+
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l--~g 73 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDV--FG 73 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCS--SS
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCcc--CC
Confidence 34555 99999999999998 55899999 599998 33 9999999999999999999999999 78
Q ss_pred CCcccccccccCCC
Q 019392 187 QPFRLNWATFSGSD 200 (341)
Q Consensus 187 ~~~~~~~~~~~~~~ 200 (341)
+++++.++......
T Consensus 74 r~i~v~~A~~~sd~ 87 (96)
T 2diu_A 74 NRIIVSFTPKNREL 87 (96)
T ss_dssp SCCEEESSCCSCCC
T ss_pred ceEEEEecCCCcce
Confidence 99999998865443
No 343
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.62 E-value=6.5e-16 Score=130.89 Aligned_cols=81 Identities=16% Similarity=0.274 Sum_probs=70.8
Q ss_pred cCCCceEEeCCCCCCC---------CHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCee
Q 019392 205 ACSDLSIFVGDLAPDV---------TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY 275 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~~---------t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~ 275 (341)
....++|||+||+..+ +|++|+++|+ .||.|++|+|+. +||||||+|.+.++|+.|++.|+|..
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~-~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFS-RLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHH-TTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHH-ccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 4567899999999998 7999999996 999999999985 47899999999999999999999999
Q ss_pred e------------cCccEEEEecCCCCCC
Q 019392 276 C------------SSRPMRIDVATPKKAS 292 (341)
Q Consensus 276 i------------~g~~i~v~~a~~k~~~ 292 (341)
| .|+.|.|+||+.+...
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC-----
T ss_pred EeccccccccccCCCCEEEEEEccCCCCH
Confidence 9 8999999999887654
No 344
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.7e-15 Score=110.09 Aligned_cols=79 Identities=16% Similarity=0.289 Sum_probs=69.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCc
Q 019392 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (341)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~ 189 (341)
......++|||+|| ++|+++|+++|+.||.|.+|++. +++|||||+|.+.++|.+|++.|++..+ .++.+
T Consensus 10 ~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l 79 (97)
T 1x5p_A 10 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQV--ESVQL 79 (97)
T ss_dssp CCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEE--TTEEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeE--CCeEE
Confidence 34567789999996 89999999999999999999985 3559999999999999999999999999 67889
Q ss_pred ccccccccC
Q 019392 190 RLNWATFSG 198 (341)
Q Consensus 190 ~~~~~~~~~ 198 (341)
+|.|+....
T Consensus 80 ~v~~a~~~~ 88 (97)
T 1x5p_A 80 KVNIARKQP 88 (97)
T ss_dssp EEECCSSCC
T ss_pred EEEECCCCC
Confidence 999887554
No 345
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.62 E-value=1.2e-15 Score=113.36 Aligned_cols=83 Identities=17% Similarity=0.190 Sum_probs=71.5
Q ss_pred CCCceEEeCCC--CCCCC--------HHHHHHHhcccCCCeeEEEEEecCCC--CCCccEEEEEeCCHHHHHHHHHHhCC
Q 019392 206 CSDLSIFVGDL--APDVT--------DSILQETFSSKYPSVKGAKVIIDSNT--GRTKGYGFVRFGDENERSRAMTEMNG 273 (341)
Q Consensus 206 ~~~~~l~v~nl--p~~~t--------~~~l~~~F~e~~G~v~~v~i~~~~~~--~~~~g~afV~F~~~~~A~~Al~~l~~ 273 (341)
.+++.|.|.|+ +.++. +++|++.|+ +||.|.+|+|++++.+ ++++|||||+|++.++|.+|++.|||
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~-k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECS-KYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHH-TTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHH-ccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 36778999997 33443 379999997 9999999999988754 36899999999999999999999999
Q ss_pred eeecCccEEEEecCCC
Q 019392 274 VYCSSRPMRIDVATPK 289 (341)
Q Consensus 274 ~~i~g~~i~v~~a~~k 289 (341)
+.++||.|+|.++...
T Consensus 82 ~~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 82 RKFANRVVVTKYCDPD 97 (105)
T ss_dssp CEETTEECEEEEECHH
T ss_pred CEeCCCEEEEEEeCHH
Confidence 9999999999997653
No 346
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.1e-15 Score=115.78 Aligned_cols=64 Identities=19% Similarity=0.397 Sum_probs=59.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCC---CCccceEEEEecCHHHHHHHHHHh
Q 019392 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQT---GQSEGYGFVEFYSRAAAEKVLQSY 177 (341)
Q Consensus 113 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~---g~~~g~afV~f~~~~~A~~Al~~l 177 (341)
...++|||+|||+++|+++|+++|+.||.|. +.++.+..+ |+++|||||+|.+.++|.+||+.|
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 5678999999999999999999999999999 888888766 799999999999999999999988
No 347
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.61 E-value=7.1e-16 Score=111.21 Aligned_cols=78 Identities=19% Similarity=0.272 Sum_probs=64.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcc
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (341)
......+|||+|||+++|+++|+++|+.||.|.+|+++.+ ++|||||+|.+.++|. .+++..+.+.++.+.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~----~~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQ----SLCGEDLIIKGISVH 77 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHH----HHTTCEEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHH----HHcCCCcccCCEEEE
Confidence 3467789999999999999999999999999999999875 6799999999999998 356777666788888
Q ss_pred ccccccc
Q 019392 191 LNWATFS 197 (341)
Q Consensus 191 ~~~~~~~ 197 (341)
+.++...
T Consensus 78 v~~a~~k 84 (89)
T 3d2w_A 78 ISNAEPK 84 (89)
T ss_dssp EEECC--
T ss_pred EEEcCCC
Confidence 8887643
No 348
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.61 E-value=4.5e-16 Score=116.78 Aligned_cols=78 Identities=12% Similarity=0.159 Sum_probs=67.2
Q ss_pred CeEEEcCC----CCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecC----HHH----HHHHHH--HhCCCC
Q 019392 116 KTIWIGDL----FHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYS----RAA----AEKVLQ--SYSGSL 181 (341)
Q Consensus 116 ~~l~v~nL----p~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~----~~~----A~~Al~--~l~~~~ 181 (341)
..|||+|| |+.+++++|+++|+.||+|.+|.++.|+.||+++|||||+|.+ ++. |.+|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 333 788888 689999
Q ss_pred CCCCCCCccccccc
Q 019392 182 MPNTDQPFRLNWAT 195 (341)
Q Consensus 182 ~~~~~~~~~~~~~~ 195 (341)
| .++.++|....
T Consensus 83 I--~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 I--MGFKFEVILNK 94 (136)
T ss_dssp E--TTEEEEEEECC
T ss_pred e--cCcEEEEEECc
Confidence 9 55666665443
No 349
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.61 E-value=3.8e-16 Score=114.51 Aligned_cols=80 Identities=25% Similarity=0.346 Sum_probs=70.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcc
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (341)
.....++|||+|||+++|+++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|++.|++..+ .++.++
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 84 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEI--DGRSVS 84 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEE--TTEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCeEEE
Confidence 44678999999999999999999999999987665 24688999999999999999999999999999 677888
Q ss_pred ccccccc
Q 019392 191 LNWATFS 197 (341)
Q Consensus 191 ~~~~~~~ 197 (341)
+.++...
T Consensus 85 v~~a~~~ 91 (96)
T 1fjc_A 85 LYYTGEK 91 (96)
T ss_dssp EEECSSS
T ss_pred EEEcCCC
Confidence 8887654
No 350
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.6e-15 Score=110.45 Aligned_cols=78 Identities=15% Similarity=0.332 Sum_probs=67.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCC-cEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCC-CCCCCCCCCc
Q 019392 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSG-SLMPNTDQPF 189 (341)
Q Consensus 112 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~-v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~-~~~~~~~~~~ 189 (341)
....++|||+|||+++|+++|+++|+.||. |..+.+. ++|||||+|.+.++|.+|++.|++ ..+ .++.+
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~--~g~~l 75 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVEL--HGKIM 75 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEE--TTEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeE--CCEEE
Confidence 357789999999999999999999999999 6666553 348999999999999999999999 888 67888
Q ss_pred ccccccccC
Q 019392 190 RLNWATFSG 198 (341)
Q Consensus 190 ~~~~~~~~~ 198 (341)
++.|+....
T Consensus 76 ~v~~a~~~~ 84 (93)
T 2cqh_A 76 EVDYSVSKK 84 (93)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCcc
Confidence 998887553
No 351
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.59 E-value=3.3e-15 Score=113.07 Aligned_cols=81 Identities=16% Similarity=0.257 Sum_probs=70.7
Q ss_pred CCceEEeCCCCC--C---CCHHHHHHHhcccCCCeeEEEEEecCC----CCCCccEEEEEeCCHHHHHHHHHHhCCeeec
Q 019392 207 SDLSIFVGDLAP--D---VTDSILQETFSSKYPSVKGAKVIIDSN----TGRTKGYGFVRFGDENERSRAMTEMNGVYCS 277 (341)
Q Consensus 207 ~~~~l~v~nlp~--~---~t~~~l~~~F~e~~G~v~~v~i~~~~~----~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~ 277 (341)
++++|+|.|+-. + -.+++|++.|+ +||.|.+|+|++++. +++++||+||+|.+.++|.+|++.|||+.++
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~-k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECG-KFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHT-TTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHh-ccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 567899999832 2 23689999997 999999999999864 4577899999999999999999999999999
Q ss_pred CccEEEEecCC
Q 019392 278 SRPMRIDVATP 288 (341)
Q Consensus 278 g~~i~v~~a~~ 288 (341)
||.|+|.|+..
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 99999999754
No 352
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.59 E-value=2.4e-15 Score=114.02 Aligned_cols=67 Identities=16% Similarity=0.238 Sum_probs=59.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCC
Q 019392 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186 (341)
Q Consensus 113 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~ 186 (341)
...++|||+|||+++|+++|+++|+.||.|.+|.|+.+ |||||+|.+.++|++||+.||+..|.+..
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 80 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHE 80 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 45789999999999999999999999999999999875 89999999999999999999999995433
No 353
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.59 E-value=1.4e-15 Score=109.60 Aligned_cols=75 Identities=11% Similarity=0.125 Sum_probs=68.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcccc
Q 019392 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (341)
Q Consensus 113 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (341)
...++|||+|||+++++++|+++|+.| .|.+|++. +++|||||+|.+.++|.+|++.|++..+ .++.+++.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l~V~ 73 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSF--RGKDLIVQ 73 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEE--TTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeE--CCcEEEEE
Confidence 467899999999999999999999999 99999884 4679999999999999999999999999 67888888
Q ss_pred cccc
Q 019392 193 WATF 196 (341)
Q Consensus 193 ~~~~ 196 (341)
|+..
T Consensus 74 ~a~~ 77 (88)
T 1wg1_A 74 LQPT 77 (88)
T ss_dssp ECCC
T ss_pred EcCC
Confidence 8754
No 354
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.59 E-value=5.3e-16 Score=122.47 Aligned_cols=81 Identities=19% Similarity=0.352 Sum_probs=71.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEE--------EEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCC
Q 019392 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNV--------KVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMP 183 (341)
Q Consensus 112 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i--------~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~ 183 (341)
....++|||+|||+++|+++|+++|+.||.|..| ++. .+|+++|||||+|.+.++|.+|++.|||..|
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~- 117 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVL- 117 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEE-
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEe-
Confidence 4567899999999999999999999999998764 333 3688999999999999999999999999999
Q ss_pred CCCCCccccccccc
Q 019392 184 NTDQPFRLNWATFS 197 (341)
Q Consensus 184 ~~~~~~~~~~~~~~ 197 (341)
.++.++|.|+...
T Consensus 118 -~g~~l~V~~a~~~ 130 (143)
T 3egn_A 118 -FGKPMVVQFARSA 130 (143)
T ss_dssp -TTEECEEEECCCS
T ss_pred -CCcEEEEEECCCC
Confidence 6788899888654
No 355
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.58 E-value=6e-16 Score=114.81 Aligned_cols=72 Identities=22% Similarity=0.441 Sum_probs=63.4
Q ss_pred eCCCCCCCCHHHHHHHh------------cccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCcc
Q 019392 213 VGDLAPDVTDSILQETF------------SSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP 280 (341)
Q Consensus 213 v~nlp~~~t~~~l~~~F------------~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~ 280 (341)
+.+|++.+++++|++.| + +||.|.+|+|+++.. ++++|||||+|.+.++|.+|++.|||+.++||.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~-~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~ 97 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEE-KYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQP 97 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhc-cCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEE
Confidence 45677777777776666 8 999999999998854 789999999999999999999999999999999
Q ss_pred EEEEec
Q 019392 281 MRIDVA 286 (341)
Q Consensus 281 i~v~~a 286 (341)
|+|.|+
T Consensus 98 i~v~~s 103 (104)
T 1jmt_A 98 IHAELS 103 (104)
T ss_dssp CCEEEC
T ss_pred EEEEEc
Confidence 999986
No 356
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.58 E-value=3.6e-15 Score=138.60 Aligned_cols=84 Identities=17% Similarity=0.312 Sum_probs=77.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcc
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (341)
.....++|||+|||+.+|+++|.++|..||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..| .+..|.
T Consensus 98 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i--~gr~i~ 175 (437)
T 3pgw_S 98 QGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKI--DGRRVL 175 (437)
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEE--CCEEEE
Confidence 345678999999999999999999999999999999999998999999999999999999999999999999 677888
Q ss_pred cccccc
Q 019392 191 LNWATF 196 (341)
Q Consensus 191 ~~~~~~ 196 (341)
|.|+..
T Consensus 176 V~~a~~ 181 (437)
T 3pgw_S 176 VDVERG 181 (437)
T ss_pred EEEeCC
Confidence 888764
No 357
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.56 E-value=6.2e-15 Score=105.84 Aligned_cols=72 Identities=17% Similarity=0.485 Sum_probs=64.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhc----C-------CcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCC
Q 019392 112 NDETKTIWIGDLFHWMDETFLHNCFSHT----G-------QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGS 180 (341)
Q Consensus 112 ~~~~~~l~v~nLp~~~te~~l~~~f~~~----G-------~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~ 180 (341)
....++|||+|||+++++++|+++|+.| | .|.++++.++ +|||||+|.+.++|.+|+ .|++.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCC
Confidence 3567899999999999999999999999 8 8999998865 499999999999999999 99999
Q ss_pred CCCCCCCCcccc
Q 019392 181 LMPNTDQPFRLN 192 (341)
Q Consensus 181 ~~~~~~~~~~~~ 192 (341)
.+ .++.+++.
T Consensus 76 ~~--~g~~l~V~ 85 (87)
T 2hzc_A 76 IF--QGQSLKIR 85 (87)
T ss_dssp EE--TTEECEEE
T ss_pred EE--CCeEEEEe
Confidence 99 55566654
No 358
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.55 E-value=1.6e-14 Score=110.23 Aligned_cols=78 Identities=17% Similarity=0.307 Sum_probs=69.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcc
Q 019392 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (341)
.....++|||+|| ++|+++|+++|+.||.|.+|++. .++|||||+|.+.++|.+|++.|++..+ .++.++
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~--~g~~l~ 104 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQV--ESVQLK 104 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBC--SSCBCE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEE--CCeEEE
Confidence 3467889999996 69999999999999999999986 3559999999999999999999999999 678899
Q ss_pred cccccccC
Q 019392 191 LNWATFSG 198 (341)
Q Consensus 191 ~~~~~~~~ 198 (341)
|.|+....
T Consensus 105 V~~a~~~~ 112 (121)
T 2bz2_A 105 VNIARKQP 112 (121)
T ss_dssp EEECCSSC
T ss_pred EEEeCCCC
Confidence 99887553
No 359
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.54 E-value=2.2e-14 Score=106.41 Aligned_cols=81 Identities=14% Similarity=0.092 Sum_probs=71.0
Q ss_pred CCCCeEEEcCCCC-----CCCHHHHHHHHHhcCCcEEEEEEecCCC-CCccceEEEEecCHHHHHHHHHHhCCCCCCCCC
Q 019392 113 DETKTIWIGDLFH-----WMDETFLHNCFSHTGQVVNVKVIRNKQT-GQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186 (341)
Q Consensus 113 ~~~~~l~v~nLp~-----~~te~~l~~~f~~~G~v~~i~i~~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~ 186 (341)
.++++|+|+||.. +-++++|+++|++||.|.+|+|+.++.+ ++++|||||+|.+.++|.+|++.|||+.+ .+
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~--~G 83 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYF--GG 83 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEE--TT
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEE--CC
Confidence 5788999999973 2478999999999999999999998654 68899999999999999999999999999 67
Q ss_pred CCccccccc
Q 019392 187 QPFRLNWAT 195 (341)
Q Consensus 187 ~~~~~~~~~ 195 (341)
+.+++.++.
T Consensus 84 r~i~v~~a~ 92 (105)
T 2pe8_A 84 RVVKACFYN 92 (105)
T ss_dssp EECEEEECC
T ss_pred cEEEEEEcC
Confidence 888887765
No 360
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=6.4e-15 Score=106.07 Aligned_cols=78 Identities=19% Similarity=0.260 Sum_probs=65.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCcccc
Q 019392 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (341)
Q Consensus 113 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (341)
...++|||+|||+++|+++|+++|+.||.|.+|+++.+ ++|||||+|.+.++|++ +++..+...++.+++.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~----~~~~~~~~~g~~l~v~ 73 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQS----LCGEDLIIKGISVHIS 73 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHH----TTTCEEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHH----HhcCCceeCCEEEEEE
Confidence 46789999999999999999999999999999999865 56999999999999975 4555555577888888
Q ss_pred cccccCC
Q 019392 193 WATFSGS 199 (341)
Q Consensus 193 ~~~~~~~ 199 (341)
++.....
T Consensus 74 ~a~~~~~ 80 (88)
T 1wf0_A 74 NAEPKHN 80 (88)
T ss_dssp CCCCCCC
T ss_pred ecCCCCC
Confidence 8875543
No 361
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1.2e-13 Score=101.22 Aligned_cols=67 Identities=16% Similarity=0.248 Sum_probs=59.4
Q ss_pred CCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEecCCCCCC
Q 019392 218 PDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292 (341)
Q Consensus 218 ~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a~~k~~~ 292 (341)
..+++++|+++|+ .||.|.+|+|+ ++++|||||+|++.++|.+|++.+++ +.|+.|+|.|++++...
T Consensus 27 ~~~te~~L~~~F~-~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~~ 93 (100)
T 2d9o_A 27 GGYSKDVLLRLLQ-KYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQD 93 (100)
T ss_dssp CSCCHHHHHHHHH-TTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCCC
T ss_pred CCCCHHHHHHHHH-hcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCCC
Confidence 5799999999996 99999999988 36899999999999999999988554 67999999999887644
No 362
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.50 E-value=4e-14 Score=117.23 Aligned_cols=78 Identities=17% Similarity=0.235 Sum_probs=69.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCCccccc
Q 019392 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (341)
Q Consensus 114 ~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~ 193 (341)
..++|||+|||+++|+++|+++|+.||.|.+|+++++. +|.++|||||+|.+.++|.+|++.++ ..+ .++.+++.|
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~--~Gr~l~V~~ 183 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKY--KETDLLILF 183 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEE--TTEECEEEE
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeE--CCEEEEEEE
Confidence 45899999999999999999999999999999999987 58999999999999999999997654 467 667777776
Q ss_pred cc
Q 019392 194 AT 195 (341)
Q Consensus 194 ~~ 195 (341)
..
T Consensus 184 ~~ 185 (193)
T 2voo_A 184 KD 185 (193)
T ss_dssp TT
T ss_pred hH
Confidence 54
No 363
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.49 E-value=5.8e-14 Score=118.91 Aligned_cols=80 Identities=21% Similarity=0.380 Sum_probs=70.4
Q ss_pred CCCCCeEEEcCCCCCC---------CHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCC
Q 019392 112 NDETKTIWIGDLFHWM---------DETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLM 182 (341)
Q Consensus 112 ~~~~~~l~v~nLp~~~---------te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~ 182 (341)
....++|||+||+..+ +|++|+++|+.||+|++|+|+.+ +|||||+|.+.++|+.|++.|++..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4578999999999998 79999999999999999999965 49999999999999999999999998
Q ss_pred C----------CCCCCccccccccc
Q 019392 183 P----------NTDQPFRLNWATFS 197 (341)
Q Consensus 183 ~----------~~~~~~~~~~~~~~ 197 (341)
. +.++.|.|.|+...
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC--
T ss_pred eccccccccccCCCCEEEEEEccCC
Confidence 2 25778899998754
No 364
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=2.7e-13 Score=102.09 Aligned_cols=82 Identities=18% Similarity=0.231 Sum_probs=69.3
Q ss_pred CCCCCCCeEEEcCCCCCCC-----------HHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhC
Q 019392 110 FTNDETKTIWIGDLFHWMD-----------ETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYS 178 (341)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~t-----------e~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~ 178 (341)
..+..+++|+|.||....+ +++|+++|++||.|.+|.| .++ .++|||||+|.+.++|.+|++.||
T Consensus 10 ~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 10 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp CCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHST
T ss_pred CCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcC
Confidence 3557889999999954432 6899999999999999966 554 378999999999999999999999
Q ss_pred CCCCCCCCCCccccccccc
Q 019392 179 GSLMPNTDQPFRLNWATFS 197 (341)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~ 197 (341)
|..+ .++.+++.|+...
T Consensus 86 g~~~--~gr~l~v~~a~~~ 102 (112)
T 2dit_A 86 GRWF--GGRQITAQAWDGT 102 (112)
T ss_dssp TCEE--TTEECEEEECCSC
T ss_pred CCEE--CCcEEEEEEeCCC
Confidence 9999 6788899887654
No 365
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.45 E-value=1.6e-13 Score=122.41 Aligned_cols=76 Identities=21% Similarity=0.319 Sum_probs=65.8
Q ss_pred cCCCceEEeCC--CCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeec---Cc
Q 019392 205 ACSDLSIFVGD--LAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS---SR 279 (341)
Q Consensus 205 ~~~~~~l~v~n--lp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~---g~ 279 (341)
..++++|||+| |++.+||++|+++|+ +||+|.+|.+.. +||||||+|++.++|++||+.|||+++. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~-~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLE-KCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHH-TTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHH-hcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 45778999999 578999999999997 999999987753 4789999999999999999999999883 45
Q ss_pred --cEEEEecC
Q 019392 280 --PMRIDVAT 287 (341)
Q Consensus 280 --~i~v~~a~ 287 (341)
.|.|.|+.
T Consensus 88 ~~~ly~~~~~ 97 (345)
T 3tht_A 88 KITLYLNFVE 97 (345)
T ss_dssp EEECEEEECS
T ss_pred ceEEEEEEee
Confidence 57888875
No 366
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.45 E-value=2.8e-13 Score=101.69 Aligned_cols=78 Identities=12% Similarity=0.094 Sum_probs=65.3
Q ss_pred CCceEEeCCCCCCC----------CHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeee
Q 019392 207 SDLSIFVGDLAPDV----------TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC 276 (341)
Q Consensus 207 ~~~~l~v~nlp~~~----------t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i 276 (341)
++++|.|.|+=... .+++|++.|+ +||.|.+|.|.++. .+|||||+|.+.++|.+|++.|||+.+
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~-kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECN-KHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHT-TTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHh-ccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 56678888863211 2368899996 99999999987652 589999999999999999999999999
Q ss_pred cCccEEEEecCCC
Q 019392 277 SSRPMRIDVATPK 289 (341)
Q Consensus 277 ~g~~i~v~~a~~k 289 (341)
+||.|+|.|+...
T Consensus 81 ~GR~i~v~~~~~~ 93 (114)
T 3s6e_A 81 AGKMITAAYVPLP 93 (114)
T ss_dssp TTEECEEEEECHH
T ss_pred CCEEEEEEEEcHH
Confidence 9999999998643
No 367
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.39 E-value=5.6e-13 Score=98.85 Aligned_cols=81 Identities=17% Similarity=0.185 Sum_probs=69.0
Q ss_pred CCCCeEEEcCC--CCCCC--------HHHHHHHHHhcCCcEEEEEEecCCC--CCccceEEEEecCHHHHHHHHHHhCCC
Q 019392 113 DETKTIWIGDL--FHWMD--------ETFLHNCFSHTGQVVNVKVIRNKQT--GQSEGYGFVEFYSRAAAEKVLQSYSGS 180 (341)
Q Consensus 113 ~~~~~l~v~nL--p~~~t--------e~~l~~~f~~~G~v~~i~i~~~~~~--g~~~g~afV~f~~~~~A~~Al~~l~~~ 180 (341)
.+++.|.|.|+ +.++. +++|++.|++||.|.+|+|++++.+ ++++|+|||+|.+.++|.+|++.|||+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46889999998 33443 3689999999999999999988754 468899999999999999999999999
Q ss_pred CCCCCCCCccccccc
Q 019392 181 LMPNTDQPFRLNWAT 195 (341)
Q Consensus 181 ~~~~~~~~~~~~~~~ 195 (341)
.+ .++.|++.+..
T Consensus 83 ~f--~GR~i~v~~~~ 95 (105)
T 3v4m_A 83 KF--ANRVVVTKYCD 95 (105)
T ss_dssp EE--TTEECEEEEEC
T ss_pred Ee--CCCEEEEEEeC
Confidence 99 67788877664
No 368
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.37 E-value=1.6e-13 Score=101.58 Aligned_cols=72 Identities=18% Similarity=0.274 Sum_probs=61.8
Q ss_pred EcCCCCCCCHHHHHHHH------------HhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCC
Q 019392 120 IGDLFHWMDETFLHNCF------------SHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQ 187 (341)
Q Consensus 120 v~nLp~~~te~~l~~~f------------~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~ 187 (341)
+.+|++.+++++|+++| ++||.|.+|+|+++. +++++|||||+|.+.++|.+|++.|||+.+ .++
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~--~Gr 96 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWF--NGQ 96 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEE--TTE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEE--CCE
Confidence 56677777888777666 999999999999886 478999999999999999999999999999 677
Q ss_pred Ccccccc
Q 019392 188 PFRLNWA 194 (341)
Q Consensus 188 ~~~~~~~ 194 (341)
.+++.|+
T Consensus 97 ~i~v~~s 103 (104)
T 1jmt_A 97 PIHAELS 103 (104)
T ss_dssp ECCEEEC
T ss_pred EEEEEEc
Confidence 7777764
No 369
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.35 E-value=1.2e-12 Score=98.99 Aligned_cols=80 Identities=18% Similarity=0.172 Sum_probs=68.7
Q ss_pred CCCeEEEcCCCC--CC---CHHHHHHHHHhcCCcEEEEEEecCC----CCCccceEEEEecCHHHHHHHHHHhCCCCCCC
Q 019392 114 ETKTIWIGDLFH--WM---DETFLHNCFSHTGQVVNVKVIRNKQ----TGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPN 184 (341)
Q Consensus 114 ~~~~l~v~nLp~--~~---te~~l~~~f~~~G~v~~i~i~~~~~----~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~ 184 (341)
++++|+|.|+-. ++ -+++|++.|++||.|.+|+|++++. +++++|++||+|.+.++|.+|++.|||+.+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f-- 96 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF-- 96 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEE--
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEE--
Confidence 688999999842 22 3689999999999999999999864 356789999999999999999999999999
Q ss_pred CCCCccccccc
Q 019392 185 TDQPFRLNWAT 195 (341)
Q Consensus 185 ~~~~~~~~~~~ 195 (341)
.++.|++.+..
T Consensus 97 ~GR~i~v~~~~ 107 (118)
T 3ue2_A 97 AGRKVVAEVYD 107 (118)
T ss_dssp TTEECEEEEEC
T ss_pred CCcEEEEEEcC
Confidence 67778777654
No 370
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=1.2e-11 Score=90.53 Aligned_cols=77 Identities=22% Similarity=0.319 Sum_probs=63.2
Q ss_pred CCCCeEEEcCCC-------CCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCC
Q 019392 113 DETKTIWIGDLF-------HWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNT 185 (341)
Q Consensus 113 ~~~~~l~v~nLp-------~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~ 185 (341)
...++|.|.-.. ..+++++|+++|+.||.|.+|+|+ ++++|||||+|.+.++|..|++.+++ + .
T Consensus 8 ~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~--~ 78 (100)
T 2d9o_A 8 QGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--L--V 78 (100)
T ss_dssp CSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--C--S
T ss_pred CccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--C--C
Confidence 346677777654 458999999999999999999998 35789999999999999999987554 3 5
Q ss_pred CCCcccccccccC
Q 019392 186 DQPFRLNWATFSG 198 (341)
Q Consensus 186 ~~~~~~~~~~~~~ 198 (341)
+++++|.|+....
T Consensus 79 g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 79 DNPLKISWLEGQP 91 (100)
T ss_dssp SSBCEEECSSCCC
T ss_pred CCeEEEEEccCCC
Confidence 7889999987553
No 371
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.34 E-value=1.5e-12 Score=116.17 Aligned_cols=111 Identities=12% Similarity=0.157 Sum_probs=77.9
Q ss_pred CCCCCCeEEEcC--CCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCC-CCCC
Q 019392 111 TNDETKTIWIGD--LFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMP-NTDQ 187 (341)
Q Consensus 111 ~~~~~~~l~v~n--Lp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~-~~~~ 187 (341)
...++++|||+| |++.+||++|+++|++||.|.+|.+.. +||||||+|.+.++|++|++.|||..+. ..++
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 357889999999 578999999999999999999987754 3599999999999999999999999873 2223
Q ss_pred --CcccccccccCCCC-ccccCCCceEEeCCCCCCCCHHHHHHHhc
Q 019392 188 --PFRLNWATFSGSDR-RTEACSDLSIFVGDLAPDVTDSILQETFS 230 (341)
Q Consensus 188 --~~~~~~~~~~~~~~-~~~~~~~~~l~v~nlp~~~t~~~l~~~F~ 230 (341)
.+.+.+........ .....+....+ +|..+++++=..++.
T Consensus 88 ~~~ly~~~~~~~~~~~~~~~~lp~Gl~~---~p~fis~~Ee~~Ll~ 130 (345)
T 3tht_A 88 KITLYLNFVEKVQWKELRPQALPPGLMV---VEEIISSEEEKMLLE 130 (345)
T ss_dssp EEECEEEECSSEEEEEEECCSCCTTEEE---ETTCSCHHHHHHHHT
T ss_pred ceEEEEEEeecccccccccccCCCceEE---EcCcCCHHHHHHHHH
Confidence 56666653211000 01111222233 344577766666664
No 372
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.28 E-value=8.8e-12 Score=87.59 Aligned_cols=73 Identities=19% Similarity=0.292 Sum_probs=61.8
Q ss_pred CCceEEeCCCC----CCCCH----HHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecC
Q 019392 207 SDLSIFVGDLA----PDVTD----SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSS 278 (341)
Q Consensus 207 ~~~~l~v~nlp----~~~t~----~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g 278 (341)
+..||+|.-.+ .++-. .+|.+.|+ .||+|..++|+.|+ +||+|.+.++|.+||+ |||..++|
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~-~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFA-SFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHH-TTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHH-hCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 55678887665 23333 67899997 99999999999873 9999999999999997 99999999
Q ss_pred ccEEEEecCCC
Q 019392 279 RPMRIDVATPK 289 (341)
Q Consensus 279 ~~i~v~~a~~k 289 (341)
|.|+|+++++.
T Consensus 76 r~LkV~lkt~d 86 (91)
T 2dnr_A 76 RTITIALKSPS 86 (91)
T ss_dssp EEEEEEECCCS
T ss_pred eEEEEEeCCCC
Confidence 99999998874
No 373
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=2.7e-11 Score=90.94 Aligned_cols=77 Identities=13% Similarity=0.104 Sum_probs=68.3
Q ss_pred cCCCceEEeCCCCCC-CCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCC-HHHHHHHHHHhC--CeeecCcc
Q 019392 205 ACSDLSIFVGDLAPD-VTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGD-ENERSRAMTEMN--GVYCSSRP 280 (341)
Q Consensus 205 ~~~~~~l~v~nlp~~-~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~-~~~A~~Al~~l~--~~~i~g~~ 280 (341)
....+.|+|+||+++ +++++|+++|+ .||+|..|.+.++.. .|||+|.+ .++|.+|++.|| +..|.|..
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~-~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFS-NHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTC-SSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHH-hcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 446789999999999 99999999997 999999999988754 59999999 899999999995 68899999
Q ss_pred EEEEecCC
Q 019392 281 MRIDVATP 288 (341)
Q Consensus 281 i~v~~a~~ 288 (341)
++++...-
T Consensus 88 ~~~evL~G 95 (121)
T 1owx_A 88 VTWEVLEG 95 (121)
T ss_dssp EEEEECCH
T ss_pred EEEEECCC
Confidence 99887553
No 374
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.16 E-value=8.3e-11 Score=88.17 Aligned_cols=77 Identities=17% Similarity=0.226 Sum_probs=63.7
Q ss_pred CCCCeEEEcCCCCCCC----------HHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCC
Q 019392 113 DETKTIWIGDLFHWMD----------ETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLM 182 (341)
Q Consensus 113 ~~~~~l~v~nLp~~~t----------e~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~ 182 (341)
.+++.|.|.|+=..-. +++|++.|++||.|.+|.|.++. .+|++||+|.+.++|.+|++.|||+.+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4678899999853222 34789999999999999997653 479999999999999999999999999
Q ss_pred CCCCCCccccccc
Q 019392 183 PNTDQPFRLNWAT 195 (341)
Q Consensus 183 ~~~~~~~~~~~~~ 195 (341)
.++.+++.+..
T Consensus 81 --~GR~i~v~~~~ 91 (114)
T 3s6e_A 81 --AGKMITAAYVP 91 (114)
T ss_dssp --TTEECEEEEEC
T ss_pred --CCEEEEEEEEc
Confidence 67778777764
No 375
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.10 E-value=1.1e-10 Score=82.44 Aligned_cols=73 Identities=16% Similarity=0.303 Sum_probs=61.4
Q ss_pred CCCceEEeCCCCCC------CCH---HHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeee
Q 019392 206 CSDLSIFVGDLAPD------VTD---SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC 276 (341)
Q Consensus 206 ~~~~~l~v~nlp~~------~t~---~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i 276 (341)
.+..||+|.-++.+ ..+ .+|.+.|+ .||+|..++|..|+ +||+|.+.++|.+||+ |||..+
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~-~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLG-SYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHH-HHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHH-HCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeee
Confidence 45678999877643 221 56889997 99999999999873 9999999999999997 999999
Q ss_pred cCccEEEEecCC
Q 019392 277 SSRPMRIDVATP 288 (341)
Q Consensus 277 ~g~~i~v~~a~~ 288 (341)
+||.|+|++..+
T Consensus 83 ~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 83 KGRAVKISGPSS 94 (95)
T ss_dssp TTEEEEEECCCC
T ss_pred CCeEEEEeccCC
Confidence 999999997543
No 376
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.10 E-value=1.8e-10 Score=97.46 Aligned_cols=69 Identities=19% Similarity=0.271 Sum_probs=61.6
Q ss_pred CCCHHHHHHHhcccCCCeeEEEEEecCC----CCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEecCC
Q 019392 219 DVTDSILQETFSSKYPSVKGAKVIIDSN----TGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (341)
Q Consensus 219 ~~t~~~l~~~F~e~~G~v~~v~i~~~~~----~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a~~ 288 (341)
+-.+++|++.|+ +||.|.++.|+++.. +++++|++||+|.+.++|.+|++.|||+.++||.|.|.++..
T Consensus 140 ~e~~~dl~~e~~-~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 140 DDLEGEVTEECG-KFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp TTHHHHHHHHHT-TTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHH-ccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 346789999997 999999999986543 458999999999999999999999999999999999999753
No 377
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.04 E-value=9.7e-10 Score=82.45 Aligned_cols=63 Identities=14% Similarity=0.096 Sum_probs=57.3
Q ss_pred CCCCCCeEEEcCCCCC-CCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecC-HHHHHHHHHHhCC
Q 019392 111 TNDETKTIWIGDLFHW-MDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYS-RAAAEKVLQSYSG 179 (341)
Q Consensus 111 ~~~~~~~l~v~nLp~~-~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~-~~~A~~Al~~l~~ 179 (341)
.....+.|+|+||+++ ++.++|+++|+.||.|..|.+..+. ..|||+|.+ .++|..|++.++.
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~------~tgfVrf~~~~~~A~~av~~ln~ 78 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA------KEGIILFKEKAKEALGKAKDANN 78 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC------SEEEEEESSCHHHHHHHHHHTTT
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC------CEEEEEECCChHHHHHHHHHhhc
Confidence 4568889999999999 9999999999999999999999886 369999999 8999999999864
No 378
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.79 E-value=6.9e-09 Score=72.86 Aligned_cols=72 Identities=17% Similarity=0.270 Sum_probs=57.9
Q ss_pred CCCCeEEEcCCC----CCCCH----HHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCC
Q 019392 113 DETKTIWIGDLF----HWMDE----TFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPN 184 (341)
Q Consensus 113 ~~~~~l~v~nLp----~~~te----~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~ 184 (341)
++..||+|.-++ .++-+ .+|.+.|..||.|..++++.++ +||+|.+.++|.+|++ |+|..+
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v-- 73 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKEL-- 73 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEE--
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEe--
Confidence 345578887766 23333 5788999999999999999875 8999999999999998 999999
Q ss_pred CCCCccccccc
Q 019392 185 TDQPFRLNWAT 195 (341)
Q Consensus 185 ~~~~~~~~~~~ 195 (341)
.++.+++..+.
T Consensus 74 ~Gr~LkV~lkt 84 (91)
T 2dnr_A 74 LNRTITIALKS 84 (91)
T ss_dssp TTEEEEEEECC
T ss_pred CCeEEEEEeCC
Confidence 67777776654
No 379
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.76 E-value=5.2e-08 Score=70.04 Aligned_cols=72 Identities=15% Similarity=0.216 Sum_probs=65.9
Q ss_pred CCceEEeCCCCCCCCHHHHHHHhcccC-----CCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccE
Q 019392 207 SDLSIFVGDLAPDVTDSILQETFSSKY-----PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281 (341)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~e~~-----G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i 281 (341)
..++|-|-|||..+++..|+.++. .+ |.|..|.+..|.. =|+|+|+|..+|-+|.-.|+|.+|+||+|
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve-~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQ-EEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHH-HHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHh-hhhccCccceeEEEEecCCC------ceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 467899999999999999999995 99 9999999998743 49999999999999999999999999999
Q ss_pred EEEe
Q 019392 282 RIDV 285 (341)
Q Consensus 282 ~v~~ 285 (341)
+|.-
T Consensus 93 r~gT 96 (117)
T 2l9w_A 93 RSGT 96 (117)
T ss_dssp EEEC
T ss_pred EecC
Confidence 9974
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.68 E-value=3.6e-08 Score=83.22 Aligned_cols=79 Identities=16% Similarity=0.136 Sum_probs=63.3
Q ss_pred CCeEEEcCCC-----CCCCHHHHHHHHHhcCCcEEEEEEecCC----CCCccceEEEEecCHHHHHHHHHHhCCCCCCCC
Q 019392 115 TKTIWIGDLF-----HWMDETFLHNCFSHTGQVVNVKVIRNKQ----TGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNT 185 (341)
Q Consensus 115 ~~~l~v~nLp-----~~~te~~l~~~f~~~G~v~~i~i~~~~~----~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~ 185 (341)
.+.+.+.|+- .+-.+++|++.|++||.|.++.|+++.. +++++|++||+|.+.++|.+|++.|+|+.+ .
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~--~ 201 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF--A 201 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBS--S
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceE--C
Confidence 3445554443 2345778999999999999999986543 458999999999999999999999999999 6
Q ss_pred CCCccccccc
Q 019392 186 DQPFRLNWAT 195 (341)
Q Consensus 186 ~~~~~~~~~~ 195 (341)
++.|.+.+..
T Consensus 202 gr~i~~~~~~ 211 (222)
T 3dxb_A 202 GRKVVAEVYD 211 (222)
T ss_dssp SSBCEEEECC
T ss_pred CeEEEEEEcC
Confidence 7777776654
No 381
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.59 E-value=4.4e-08 Score=69.07 Aligned_cols=71 Identities=18% Similarity=0.189 Sum_probs=57.7
Q ss_pred CCCCeEEEcCCCCC------CCH---HHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCC
Q 019392 113 DETKTIWIGDLFHW------MDE---TFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMP 183 (341)
Q Consensus 113 ~~~~~l~v~nLp~~------~te---~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~ 183 (341)
++..||+|.-++.. .++ .+|.+.|..||.|..+++..|+ +||+|.+.++|.+||+ |+|..+
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v- 82 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKV- 82 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEE-
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeee-
Confidence 46668999887642 332 4688899999999999999875 9999999999999998 999999
Q ss_pred CCCCCcccccc
Q 019392 184 NTDQPFRLNWA 194 (341)
Q Consensus 184 ~~~~~~~~~~~ 194 (341)
.++.+++++.
T Consensus 83 -~Gr~L~V~~k 92 (95)
T 1ufw_A 83 -KGRAVKISGP 92 (95)
T ss_dssp -TTEEEEEECC
T ss_pred -CCeEEEEecc
Confidence 6666666543
No 382
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=1.5e-06 Score=61.96 Aligned_cols=75 Identities=17% Similarity=0.244 Sum_probs=60.3
Q ss_pred CCCceEEeCCCCCCCCHHHHHHHhccc-----CCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCcc
Q 019392 206 CSDLSIFVGDLAPDVTDSILQETFSSK-----YPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP 280 (341)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~e~-----~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~ 280 (341)
...++|.|.|||+++.++.|.-+|. . -|+|+++.... +-|+|+|.+.+.|++.|+ -..+.|.+..
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFE-n~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~-k~~H~L~~~~ 75 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFE-NRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLA-QADHELHGAQ 75 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHH-CTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHT-CSCCBSSSSB
T ss_pred cCccEEEEECCCCCCChhHheEEEe-CCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhc-CCcceecCeE
Confidence 3567899999999999999999995 4 35688877653 259999999999999984 3357889999
Q ss_pred EEEEecCCCC
Q 019392 281 MRIDVATPKK 290 (341)
Q Consensus 281 i~v~~a~~k~ 290 (341)
|.|....++.
T Consensus 76 LsV~P~~~~~ 85 (104)
T 2dhx_A 76 LSLRPAPPRA 85 (104)
T ss_dssp CEEEECCCCC
T ss_pred EEEEcCCCCC
Confidence 9998755543
No 383
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.41 E-value=1e-06 Score=63.41 Aligned_cols=72 Identities=13% Similarity=0.164 Sum_probs=64.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhc-----CCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCC
Q 019392 112 NDETKTIWIGDLFHWMDETFLHNCFSHT-----GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186 (341)
Q Consensus 112 ~~~~~~l~v~nLp~~~te~~l~~~f~~~-----G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~ 186 (341)
.+..++|-+-|||..+++..|+.|++++ |.++.|.+..|. +-|+|+|.|...|.+|.-.|+|..|. +
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~--g 89 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQ--G 89 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEET--T
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeec--C
Confidence 4568899999999999999999999999 999999999986 67999999999999999899999994 5
Q ss_pred CCccc
Q 019392 187 QPFRL 191 (341)
Q Consensus 187 ~~~~~ 191 (341)
+.+++
T Consensus 90 r~Lr~ 94 (117)
T 2l9w_A 90 KVIRS 94 (117)
T ss_dssp EEEEE
T ss_pred eEEEe
Confidence 55544
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.11 E-value=4.2e-05 Score=54.56 Aligned_cols=89 Identities=18% Similarity=0.240 Sum_probs=67.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHh-----cCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCC
Q 019392 113 DETKTIWIGDLFHWMDETFLHNCFSH-----TGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQ 187 (341)
Q Consensus 113 ~~~~~l~v~nLp~~~te~~l~~~f~~-----~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~ 187 (341)
...++|.|.|||..++++.|.-+|+. -|+|.++.... +-|+|+|.+.+.|++.|+. ..+.| .+.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L--~~~ 74 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHEL--HGA 74 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBS--SSS
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-Cccee--cCe
Confidence 46789999999999999999999987 25888887754 3599999999999999963 34455 344
Q ss_pred CcccccccccCCCCccccCCCceEEeCCCCCCCC
Q 019392 188 PFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVT 221 (341)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t 221 (341)
.+.+.... .....+|++.+|++.++
T Consensus 75 ~LsV~P~~---------~~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 75 QLSLRPAP---------PRAPARLLLQGLPPGTS 99 (104)
T ss_dssp BCEEEECC---------CCCCCCCCCCSCCCCCC
T ss_pred EEEEEcCC---------CCCcceEeeecCCCCCC
Confidence 45553322 22556899999998875
No 385
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.06 E-value=8.8e-06 Score=58.37 Aligned_cols=76 Identities=11% Similarity=0.096 Sum_probs=63.5
Q ss_pred CCceEEeCCCCCCC-C----HHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccE
Q 019392 207 SDLSIFVGDLAPDV-T----DSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281 (341)
Q Consensus 207 ~~~~l~v~nlp~~~-t----~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i 281 (341)
-.++|+|.||+.++ . .+.++++|. .|+++.....++.-. -..|.|.+.++|.+|...||+..+.|+.|
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~-~~~~~~tF~~lkSFR------Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~ 76 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFR-TYDKDTTFQYFKSFK------RVRINFSNPLSAADARLRLHKTEFLGKEM 76 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHH-TTCSSCEEEEETTTT------EEEEECSSTTHHHHHHHTSTTSEETTEEC
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHH-hhCcCcceeecCcce------EEEEEeCChHHHHHHHHHhccceecCcee
Confidence 35689999998865 2 257799996 999999887775421 37899999999999999999999999999
Q ss_pred EEEecCCC
Q 019392 282 RIDVATPK 289 (341)
Q Consensus 282 ~v~~a~~k 289 (341)
+|-|+.+-
T Consensus 77 r~YFgq~~ 84 (104)
T 1wey_A 77 KLYFAQTL 84 (104)
T ss_dssp EEECCCCS
T ss_pred EEEecCCC
Confidence 99999854
No 386
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.85 E-value=9.7e-05 Score=52.09 Aligned_cols=68 Identities=13% Similarity=0.208 Sum_probs=55.3
Q ss_pred ceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCC--CccEEEEEeCCHHHHHHHHHHhCCeeec
Q 019392 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGR--TKGYGFVRFGDENERSRAMTEMNGVYCS 277 (341)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~--~~g~afV~F~~~~~A~~Al~~l~~~~i~ 277 (341)
++|.|++||+.+||+++.+.+. ....+........+.+.+ .-+-|||.|++.+++..-.+.++|+.+-
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~-~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQ-PMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHC-SCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhc-CcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 4799999999999999999997 888877776665443222 2246999999999999999999997764
No 387
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.85 E-value=0.00012 Score=51.58 Aligned_cols=57 Identities=12% Similarity=0.187 Sum_probs=48.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhC
Q 019392 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYS 178 (341)
Q Consensus 113 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~ 178 (341)
.-...++| ++|.++...||.++|+.||.| .|+.+.| ..|||.|.+++.|..|++.+.
T Consensus 14 ~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 14 KRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET-------TEEEEECSCHHHHHHHHHHHH
T ss_pred CCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 34455666 999999999999999999954 7778877 479999999999999998764
No 388
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.74 E-value=0.00015 Score=51.12 Aligned_cols=56 Identities=20% Similarity=0.272 Sum_probs=47.0
Q ss_pred CCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhC
Q 019392 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 272 (341)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~ 272 (341)
....++| ++|+++...||.++|+ .||.|. |+.+-|. -|||.|.+++.|..|++.++
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs-~fggv~-I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFS-AFGNIQ-ISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHT-TTCSCC-CEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhh-ccCCEE-EEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 3446777 9999999999999997 999555 7777662 59999999999999998763
No 389
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.62 E-value=0.00022 Score=50.29 Aligned_cols=68 Identities=9% Similarity=0.085 Sum_probs=56.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCC--ccceEEEEecCHHHHHHHHHHhCCCCCC
Q 019392 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQ--SEGYGFVEFYSRAAAEKVLQSYSGSLMP 183 (341)
Q Consensus 116 ~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~--~~g~afV~f~~~~~A~~Al~~l~~~~~~ 183 (341)
++|.|++||+.+||+++.+.+..+..+.....+..+.+.. .-.-|||.|.+.+++....+.++|..+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 5799999999999999999999998877766666543322 2356999999999999999999999874
No 390
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.49 E-value=0.00031 Score=50.39 Aligned_cols=75 Identities=8% Similarity=0.022 Sum_probs=61.7
Q ss_pred CCCeEEEcCCCCCC-CH----HHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCCCCCCC
Q 019392 114 ETKTIWIGDLFHWM-DE----TFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188 (341)
Q Consensus 114 ~~~~l~v~nLp~~~-te----~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~ 188 (341)
-.++|+|.||+.++ +. +.++++|..|+++......++- .-..|.|.+.++|.+|...|++..+ .+..
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f--~g~~ 75 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEF--LGKE 75 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEE--TTEE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhcccee--cCce
Confidence 45689999998754 22 4678999999999888877764 3579999999999999999999999 6667
Q ss_pred cccccccc
Q 019392 189 FRLNWATF 196 (341)
Q Consensus 189 ~~~~~~~~ 196 (341)
+++-++..
T Consensus 76 ~r~YFgq~ 83 (104)
T 1wey_A 76 MKLYFAQT 83 (104)
T ss_dssp CEEECCCC
T ss_pred eEEEecCC
Confidence 88888763
No 391
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.41 E-value=0.00052 Score=50.64 Aligned_cols=73 Identities=12% Similarity=0.164 Sum_probs=57.4
Q ss_pred CCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecC-ccEEEEe
Q 019392 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSS-RPMRIDV 285 (341)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g-~~i~v~~ 285 (341)
..+-|.|.++|+.. .+.|.+.|+ .||+|.+..... ..-+-.|.|.+..+|++|| ..||..|+| ..|-|..
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~-~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL-~kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFA-QYGNILKHVMSN------TGNWMHIRYQSKLQARKAL-SKDGRIFGESIMIGVKP 93 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHH-TTSCEEEEEECS------SSSEEEEEESSHHHHHHHH-TTTTCEETTTEECEEEE
T ss_pred CCCEEEEECCCHHH-HHHHHHHHH-hhCcEEEeccCC------CCCeEEEEeCCHHHHHHHH-HhCCeEecCCEEEEEEE
Confidence 45678999999886 566777886 999999887621 1238999999999999999 679999984 6677777
Q ss_pred cCC
Q 019392 286 ATP 288 (341)
Q Consensus 286 a~~ 288 (341)
...
T Consensus 94 ~~d 96 (119)
T 1wwh_A 94 CID 96 (119)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 392
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.20 E-value=0.00046 Score=48.78 Aligned_cols=54 Identities=13% Similarity=0.188 Sum_probs=46.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhC
Q 019392 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYS 178 (341)
Q Consensus 116 ~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~ 178 (341)
..++| ++|.++...||..+|+.||. ..|+.+.| ..|||.|.+++.|..|++.+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 34566 99999999999999999994 47777877 479999999999999998765
No 393
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.15 E-value=0.00052 Score=48.50 Aligned_cols=53 Identities=19% Similarity=0.222 Sum_probs=45.3
Q ss_pred eEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhC
Q 019392 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 272 (341)
Q Consensus 210 ~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~ 272 (341)
.++| ++|.++...||.++|+ .||. ..|+.+-|. -|||.|.+++.|..|++.+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs-~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFS-AFGN-IQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTT-TSEE-EEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHh-ccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 5677 9999999999999997 9994 447777662 59999999999999998774
No 394
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.12 E-value=0.00068 Score=48.04 Aligned_cols=70 Identities=11% Similarity=0.167 Sum_probs=50.3
Q ss_pred CCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCC--CccEEEEEeCCHHHHHHHHHHhCCeeec
Q 019392 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGR--TKGYGFVRFGDENERSRAMTEMNGVYCS 277 (341)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~--~~g~afV~F~~~~~A~~Al~~l~~~~i~ 277 (341)
.+-+|.|+.||+.+||+++.+.+. ..-++........+.+.+ .-.-|||.|++.++...-.+.++|..+-
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~-~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLR-PLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTS-CCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhC-CcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 345899999999999999998886 555543333222211111 1135999999999999999999997764
No 395
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.72 E-value=0.0044 Score=45.68 Aligned_cols=64 Identities=11% Similarity=0.196 Sum_probs=52.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCCCCCC
Q 019392 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMP 183 (341)
Q Consensus 112 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~ 183 (341)
....+-|.|-+.|... ...|...|+.||.|.+..... ...+-.|.|.++.+|++||. .||..+.
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~-kNG~ii~ 84 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALS-KDGRIFG 84 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHT-TTTCEET
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHH-hCCeEec
Confidence 3457789999999884 667788999999999887622 22699999999999999996 6998884
No 396
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.59 E-value=0.0016 Score=46.07 Aligned_cols=70 Identities=7% Similarity=0.032 Sum_probs=51.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCC-C-ccceEEEEecCHHHHHHHHHHhCCCCCC
Q 019392 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTG-Q-SEGYGFVEFYSRAAAEKVLQSYSGSLMP 183 (341)
Q Consensus 114 ~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g-~-~~g~afV~f~~~~~A~~Al~~l~~~~~~ 183 (341)
-+-+|.|+.||+.+||+++.+.+..+-.+.....+..+.+- . .-.-|||.|.+.++.....+.++|..+.
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 45579999999999999998888776554333322222221 1 1246899999999999999999998874
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.27 E-value=0.0019 Score=59.62 Aligned_cols=56 Identities=9% Similarity=0.214 Sum_probs=41.6
Q ss_pred CCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHH
Q 019392 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269 (341)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~ 269 (341)
..+.|+|. .+..+++.+|.++|+ .||.|.++.+..++ | -||.|+|.+.+++..++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~-~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLS-QFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHG-GGSCCCCEEEECSS--S---EEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHH-hcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHh
Confidence 44689996 799999999999997 99999998877542 2 499999999999997763
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.19 E-value=0.0025 Score=58.75 Aligned_cols=56 Identities=18% Similarity=0.194 Sum_probs=43.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHH
Q 019392 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175 (341)
Q Consensus 114 ~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~ 175 (341)
..|+|+|. .+..+++.+|.++|+.||+|.++.+..++. -||.|+|.+.+++..++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g-----~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG-----LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS-----EEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC-----eEEEEEeCCHHHHHHHHh
Confidence 56789997 799999999999999999999998887652 699999999999987764
No 399
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.96 E-value=0.0064 Score=45.44 Aligned_cols=78 Identities=12% Similarity=0.163 Sum_probs=54.8
Q ss_pred ceEEeCCCCCCCCHHHHHHHhcccCCCeeE-EEEEec--------CCCCC-----CccEEEEEeCCHHHHHHHHHHhCCe
Q 019392 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKG-AKVIID--------SNTGR-----TKGYGFVRFGDENERSRAMTEMNGV 274 (341)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~-v~i~~~--------~~~~~-----~~g~afV~F~~~~~A~~Al~~l~~~ 274 (341)
.-|.|.+.|++.+. .+.+.|+ +||.|.+ +.+.++ +...+ ...+-.|+|++..+|.+|| ..||.
T Consensus 8 ~~VtVFGFp~~~~~-~VI~~Fs-~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG~ 84 (132)
T 3p3d_A 8 LAILVFGYPETMAN-QVIAYFQ-EFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENGA 84 (132)
T ss_dssp CEEEEECCCGGGHH-HHHHHHG-GGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTTC
T ss_pred eEEEEEecCHHHHH-HHHHHHH-hhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCCe
Confidence 45778888776655 4667785 9999876 211110 00001 2357899999999999999 77999
Q ss_pred eecCccEEEEecCCC
Q 019392 275 YCSSRPMRIDVATPK 289 (341)
Q Consensus 275 ~i~g~~i~v~~a~~k 289 (341)
.|+|.-|-|.+.++.
T Consensus 85 ii~G~mIGV~Py~~~ 99 (132)
T 3p3d_A 85 VFNGVLLGVIPYTKD 99 (132)
T ss_dssp EETTEECEEEECCHH
T ss_pred EeCcEEEEEEECCHH
Confidence 999998889887543
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=91.94 E-value=0.15 Score=38.12 Aligned_cols=69 Identities=13% Similarity=0.147 Sum_probs=45.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCcEE-EEEEec------------CCCC-CccceEEEEecCHHHHHHHHHHhCC
Q 019392 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVN-VKVIRN------------KQTG-QSEGYGFVEFYSRAAAEKVLQSYSG 179 (341)
Q Consensus 114 ~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~-i~i~~~------------~~~g-~~~g~afV~f~~~~~A~~Al~~l~~ 179 (341)
....|.|-+.|.+ ....+.+.|++||.|.+ ..+.++ +... ....+..|+|.+..+|.+||. .||
T Consensus 6 ~e~~VtVFGFp~~-~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPET-MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp --CEEEEECCCGG-GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred CceEEEEEecCHH-HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 3456777788665 45567789999998866 211110 0000 123688999999999999995 699
Q ss_pred CCCCC
Q 019392 180 SLMPN 184 (341)
Q Consensus 180 ~~~~~ 184 (341)
..+.+
T Consensus 84 ~ii~G 88 (132)
T 3p3d_A 84 AVFNG 88 (132)
T ss_dssp CEETT
T ss_pred eEeCc
Confidence 88843
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=91.76 E-value=0.65 Score=43.54 Aligned_cols=56 Identities=13% Similarity=0.154 Sum_probs=46.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhCC
Q 019392 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSG 179 (341)
Q Consensus 115 ~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~ 179 (341)
...++|+ ++..+...+|.++|+.||.+ +|+.+.+ ..|||.|.+.+.|..+++.+..
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHHh
Confidence 4567776 88899999999999999964 6666655 4799999999999999998864
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=88.71 E-value=0.72 Score=43.23 Aligned_cols=55 Identities=20% Similarity=0.241 Sum_probs=44.7
Q ss_pred CceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhC
Q 019392 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 272 (341)
Q Consensus 208 ~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~ 272 (341)
...++|+ +|..+...+|.+.|+ .||.| +|+.+.| ..|||.|.+.++|..+++.++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs-~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFS-AFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGG-GGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHH-hcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 3466665 999999999999997 99954 4665544 169999999999999999885
No 403
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=77.57 E-value=4.5 Score=26.69 Aligned_cols=69 Identities=6% Similarity=0.148 Sum_probs=41.5
Q ss_pred eEEeCC-CCCCCCHHHHHHHhcccCC----CeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEE
Q 019392 210 SIFVGD-LAPDVTDSILQETFSSKYP----SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (341)
Q Consensus 210 ~l~v~n-lp~~~t~~~l~~~F~e~~G----~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~ 284 (341)
+|||.. --..+...+|..++....| .|-.|.|.-+ |.||+-.. +.|.++++.|++..+.|+.+.|+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECT-TCHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECH-HHHHHHHHHhccccCcCceEEEE
Confidence 456621 1234666777777753443 2445665422 78999864 56788899999999999999998
Q ss_pred ecC
Q 019392 285 VAT 287 (341)
Q Consensus 285 ~a~ 287 (341)
.++
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 764
No 404
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=68.59 E-value=13 Score=26.24 Aligned_cols=49 Identities=8% Similarity=0.213 Sum_probs=31.8
Q ss_pred CCCCHHHHHHHhcccCCCeeEE----EEEecCCCCCCccEEEEEeCCHHHHHHH
Q 019392 218 PDVTDSILQETFSSKYPSVKGA----KVIIDSNTGRTKGYGFVRFGDENERSRA 267 (341)
Q Consensus 218 ~~~t~~~l~~~F~e~~G~v~~v----~i~~~~~~~~~~g~afV~F~~~~~A~~A 267 (341)
.+.+..+|++.+...|+.-.++ .+...-..|++.|||.| |+|.+.|.+-
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 6788899988887677752222 23333345778888866 6777776653
No 405
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=64.04 E-value=31 Score=23.44 Aligned_cols=58 Identities=14% Similarity=0.088 Sum_probs=47.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHHhC
Q 019392 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYS 178 (341)
Q Consensus 113 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~ 178 (341)
...|-|.|-|+|..+-..++.-.....|----|..+. |-|.|.|.+.++-..|+..|-
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkll 67 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKLL 67 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHHE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHHH
Confidence 5678899999999999988887778888655555543 679999999999999998763
No 406
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=63.95 E-value=13 Score=26.22 Aligned_cols=48 Identities=10% Similarity=0.079 Sum_probs=31.3
Q ss_pred CCCCHHHHHHHhcccCCCeeE---E-EEEecCCCCCCccEEEEEeCCHHHHHH
Q 019392 218 PDVTDSILQETFSSKYPSVKG---A-KVIIDSNTGRTKGYGFVRFGDENERSR 266 (341)
Q Consensus 218 ~~~t~~~l~~~F~e~~G~v~~---v-~i~~~~~~~~~~g~afV~F~~~~~A~~ 266 (341)
.+.+..+|++.+...|+.-.+ | .+...-..|++.|||.| |+|.+.|.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 678889998888756665222 2 23333345788888876 677777654
No 407
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=63.00 E-value=14 Score=26.36 Aligned_cols=48 Identities=10% Similarity=0.084 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHhcccCCCeeEE----EEEecCCCCCCccEEEEEeCCHHHHHH
Q 019392 218 PDVTDSILQETFSSKYPSVKGA----KVIIDSNTGRTKGYGFVRFGDENERSR 266 (341)
Q Consensus 218 ~~~t~~~l~~~F~e~~G~v~~v----~i~~~~~~~~~~g~afV~F~~~~~A~~ 266 (341)
...+..+|++.+...|+.-.++ .+...-..|++.|||.| |+|.+.|.+
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 88 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLY 88 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 4678889988887677652222 22333345678899976 677777664
No 408
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=59.75 E-value=14 Score=25.83 Aligned_cols=68 Identities=6% Similarity=0.070 Sum_probs=50.4
Q ss_pred CCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEecCCCCC
Q 019392 215 DLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKA 291 (341)
Q Consensus 215 nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a~~k~~ 291 (341)
.++..++-++|.....+.||.-.+++.. +. -..|-..+.+|-++|++.|+- ...-+.|+|-+..++..
T Consensus 23 ~f~RPv~f~eL~~Kv~~~fGq~ldL~y~-n~-------EllIpl~sQeDLDkaIellDr-ss~~kSLrIlL~~~~~~ 90 (103)
T 2cu1_A 23 QFPRPVKLEDLRSKAKIAFGQSMDLHYT-NN-------ELVIPLTTQDDLDKAVELLDR-SIHMKSLKILLVINGST 90 (103)
T ss_dssp EEESSCCHHHHHHHHHHHHSSCEEEEEC-SS-------SSCEECCSHHHHHHHHHHHHH-CSSCCSEEEEEEECCCC
T ss_pred eccCCccHHHHHHHHHHHhCCeeeEEEe-cc-------eEEEeccCHHHHHHHHHHHcc-CCcccceEEEEecCCCC
Confidence 5567888899988887899988877765 32 277999999999999988763 24445667666666543
No 409
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=58.69 E-value=29 Score=25.83 Aligned_cols=48 Identities=23% Similarity=0.448 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHhcccCCCeeEE----EEEecCCCCCCccEEEEEeCCHHHHHH
Q 019392 218 PDVTDSILQETFSSKYPSVKGA----KVIIDSNTGRTKGYGFVRFGDENERSR 266 (341)
Q Consensus 218 ~~~t~~~l~~~F~e~~G~v~~v----~i~~~~~~~~~~g~afV~F~~~~~A~~ 266 (341)
...+..+|++.+...|+.-.++ .|-..-..|++.|||.| |+|.+.|.+
T Consensus 33 aTpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk 84 (135)
T 3u5c_Y 33 ANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKK 84 (135)
T ss_dssp CCCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHh
Confidence 4689999999997678753222 23333345678888877 667777654
No 410
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=55.17 E-value=3.8 Score=28.87 Aligned_cols=47 Identities=11% Similarity=0.174 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHhcccCCCeeEEEEEecC----CCCCCccEEEEEeCCHHHHH
Q 019392 218 PDVTDSILQETFSSKYPSVKGAKVIIDS----NTGRTKGYGFVRFGDENERS 265 (341)
Q Consensus 218 ~~~t~~~l~~~F~e~~G~v~~v~i~~~~----~~~~~~g~afV~F~~~~~A~ 265 (341)
...+..+|++.+...|+.-.++.++..- ..|++.|||.| |+|.+.|.
T Consensus 29 ~tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~k 79 (98)
T 2g1d_A 29 RTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAM 79 (98)
T ss_dssp SCCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHH
Confidence 4678888888877666653343333322 23677788876 44555444
No 411
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=47.88 E-value=27 Score=26.44 Aligned_cols=48 Identities=13% Similarity=0.353 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHhcccCCCeeEEEEE----ecCCCCCCccEEEEEeCCHHHHHH
Q 019392 218 PDVTDSILQETFSSKYPSVKGAKVI----IDSNTGRTKGYGFVRFGDENERSR 266 (341)
Q Consensus 218 ~~~t~~~l~~~F~e~~G~v~~v~i~----~~~~~~~~~g~afV~F~~~~~A~~ 266 (341)
...+..+|++.+...|+.=.++.++ ..-..|++.|||.| |+|.+.|.+
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk 82 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLK 82 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHh
Confidence 4688889998887567752322222 22234678888877 667777664
No 412
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=47.21 E-value=36 Score=23.15 Aligned_cols=57 Identities=12% Similarity=0.188 Sum_probs=39.7
Q ss_pred EEeCCCCCCCCHHHHHHHhcccCC-CeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHH
Q 019392 211 IFVGDLAPDVTDSILQETFSSKYP-SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270 (341)
Q Consensus 211 l~v~nlp~~~t~~~l~~~F~e~~G-~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~ 270 (341)
-++-.++...+..+|++.+.+.|+ .|.+|..+.-+ .|.. -|||.+..-.+|......
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~-~~~K--KA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITP-RGEK--KAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECT-TSCE--EEEEEECTTSCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcC-CCce--EEEEEcCCCCcHHHHHHh
Confidence 444466778999999998865677 36777766543 2322 499999988887775544
No 413
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=45.68 E-value=68 Score=21.76 Aligned_cols=69 Identities=10% Similarity=0.109 Sum_probs=48.5
Q ss_pred CCceEEeCCCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCC-------eeecCc
Q 019392 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG-------VYCSSR 279 (341)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~-------~~i~g~ 279 (341)
..+-+.|-|+|..+-..++.-... ..|--..|..+ .|-|+|.|.+.++-.-|+..|-+ .+|.|.
T Consensus 11 qnclikiinipqgtlkaevvlavr-hlgyefycdyi--------dgqamirfqnsdeqrlaiqkllnhnnnklqieirgq 81 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVR-HLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQ 81 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHH-TTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTE
T ss_pred hCcEEEEEecCCCceeeeeEEeeh-hcCeeEeeeee--------cCeeEEEecCChHHHHHHHHHHhcCCCEEEEEEcce
Confidence 456788889999988888776664 66654444433 24699999999999999987721 345565
Q ss_pred cEEEE
Q 019392 280 PMRID 284 (341)
Q Consensus 280 ~i~v~ 284 (341)
...|-
T Consensus 82 icdvi 86 (129)
T 4eyt_A 82 ICDVI 86 (129)
T ss_dssp EEEEE
T ss_pred eeeee
Confidence 55554
No 414
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=42.11 E-value=54 Score=25.50 Aligned_cols=55 Identities=11% Similarity=0.224 Sum_probs=36.4
Q ss_pred eEEeCCCCC---------CCCHHHHHHHh--cccCCCeeEEEEEecCCCCCCccEEEEEeCCHH-HHHHHH
Q 019392 210 SIFVGDLAP---------DVTDSILQETF--SSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDEN-ERSRAM 268 (341)
Q Consensus 210 ~l~v~nlp~---------~~t~~~l~~~F--~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~-~A~~Al 268 (341)
++.|-|+|. ..+..+|++.| + .|..+. |+.+.+.. -++|+|.|+|.+-- --..|+
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~-~F~p~k-v~~l~~~~--Gh~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILR-GFNPTR-VRPLWNYL--GHSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHT-TCCCSE-EEEEECSS--BEEEEEEEECCSSHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhc-CCCCce-eEecccCC--CCceeEEEEecCChHHHHHHH
Confidence 455667765 24557899977 8 898766 66665533 47899999997643 333444
No 415
>1qb3_A Cyclin-dependent kinases regulatory subunit; cell cycle mutagenesis domain swapping, cyclin-dependent KIN cycle; 3.00A {Saccharomyces cerevisiae} SCOP: d.97.1.1
Probab=39.46 E-value=6.6 Score=29.43 Aligned_cols=10 Identities=40% Similarity=0.315 Sum_probs=5.0
Q ss_pred hHHHHHHHhc
Q 019392 10 NAAAAAAAAV 19 (341)
Q Consensus 10 ~~a~~a~~~~ 19 (341)
...-.|+++.
T Consensus 107 ~~~~~~a~~~ 116 (150)
T 1qb3_A 107 EAELRAATAA 116 (150)
T ss_dssp HHHHHHHHHH
T ss_pred CCCcchhhHH
Confidence 3444555553
No 416
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=37.24 E-value=72 Score=22.30 Aligned_cols=62 Identities=8% Similarity=0.121 Sum_probs=45.2
Q ss_pred CCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEe
Q 019392 215 DLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (341)
Q Consensus 215 nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~ 285 (341)
-++..+.-++|.......||.-.++....+ --.|-..+.+|-++|++.|+ ....-+.|+|-+
T Consensus 46 qf~RPvkf~dl~qkv~~afGq~ldl~y~nn--------EL~IPL~~Q~DLDkAvelLD-rs~~mkSLRIlL 107 (111)
T 2c60_A 46 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNN--------ELSILLKNQDDLDKAIDILD-RSSSMKSLRILL 107 (111)
T ss_dssp EECSSCCHHHHHHHHHHHHSSCCEEEEECS--------SCEEECCSHHHHHHHHHHHH-HCSSCCSEEEEE
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eEEEecccHHHHHHHHHHhc-cCccccceEEEE
Confidence 556778889998888778998888876622 25688999999999998876 233334455544
No 417
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=30.99 E-value=1e+02 Score=20.91 Aligned_cols=66 Identities=8% Similarity=0.117 Sum_probs=48.3
Q ss_pred CCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEecCCC
Q 019392 215 DLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289 (341)
Q Consensus 215 nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~a~~k 289 (341)
-++..+.-++|.......||.-.++....+ --.|-..+.+|-++|++.|+ ....-+.|+|-...++
T Consensus 19 ~f~RPvkf~dl~qkv~~afGq~ldl~y~nn--------EL~iPL~~Q~DLDkAvelLD-rs~~mkSLRIlL~~~~ 84 (94)
T 2jrh_A 19 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNN--------ELSILLKNQDDLDKAIDILD-RSSSMKSLRILLLSQD 84 (94)
T ss_dssp EECSSCCHHHHHHHHHHHHCSSEEEEEECS--------SCEEECCSHHHHHHHHHHHH-HSTTTTEEEEEEEECS
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eeEEeccCHHHHHHHHHHhc-cCccccceEEEEEcCC
Confidence 456678888998888778998888876622 25688999999999998875 3334456666665554
No 418
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=30.75 E-value=97 Score=24.08 Aligned_cols=56 Identities=14% Similarity=0.042 Sum_probs=36.4
Q ss_pred eEEEcCCCC-C--------CCHHHHHHHH--HhcCCcEEEEEEecCCCCCccceEEEEecCHH-HHHHHHH
Q 019392 117 TIWIGDLFH-W--------MDETFLHNCF--SHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRA-AAEKVLQ 175 (341)
Q Consensus 117 ~l~v~nLp~-~--------~te~~l~~~f--~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~-~A~~Al~ 175 (341)
.+.|-|++. . .+..+|++.| ..|.++. ++.+.+. .-..|+|.|+|.+.- .-..|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHHH
Confidence 356667775 1 3457899977 8898864 5555554 236689999997643 3344443
No 419
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=30.50 E-value=1.3e+02 Score=20.67 Aligned_cols=62 Identities=6% Similarity=0.081 Sum_probs=45.6
Q ss_pred CCCCCCCHHHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCeeecCccEEEEe
Q 019392 215 DLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (341)
Q Consensus 215 nlp~~~t~~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~~~i~g~~i~v~~ 285 (341)
-++.-+.-++|.......||.-.++....+ + -.|-..+.+|-++|++.|+ ....-+.|+|-+
T Consensus 35 ~f~RPv~f~el~~kv~~afGq~ldl~y~nn-E-------L~iPL~~Q~DLDkAvelLD-rs~~~kSLrIlL 96 (100)
T 2npt_B 35 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNN-E-------LVIPLTTQDDLDKAVELLD-RSIHMKSLKILL 96 (100)
T ss_dssp EECSSCCHHHHHHHHHHHHTSCEEEEEEET-T-------EEEECCCHHHHHHHHHHHH-HCSSCCSEEEEE
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc-e-------eEEecccHHHHHHHHHHhc-cCccccceEEEE
Confidence 556778889998888778999888877633 2 6789999999999998875 223334445443
No 420
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=30.11 E-value=64 Score=21.96 Aligned_cols=26 Identities=15% Similarity=0.216 Sum_probs=21.2
Q ss_pred CeeEEEEEecCCCCCCccEEEEEeCC
Q 019392 235 SVKGAKVIIDSNTGRTKGYGFVRFGD 260 (341)
Q Consensus 235 ~v~~v~i~~~~~~~~~~g~afV~F~~ 260 (341)
.|.+|+|..-...|+-++||=|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 47788887766678899999999974
No 421
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=29.62 E-value=65 Score=24.18 Aligned_cols=57 Identities=14% Similarity=0.268 Sum_probs=38.7
Q ss_pred EEeCCCCCCCCHHHHHHHhcccCC-CeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHH
Q 019392 211 IFVGDLAPDVTDSILQETFSSKYP-SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270 (341)
Q Consensus 211 l~v~nlp~~~t~~~l~~~F~e~~G-~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~ 270 (341)
-|+.-++...+..+|++.+.+.|+ .|.+|..+.-+. |.- -|||.+....+|.+....
T Consensus 81 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~-g~K--KAyV~L~~~~daldvAnk 138 (142)
T 3u5e_X 81 ILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPN-GTK--KAYVRLTADYDALDIANR 138 (142)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTT-SCE--EEEEEECTTCCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCC-Cce--EEEEEeCCCCcHHHHHHh
Confidence 455567778999999888865666 377777665432 322 499999877777665443
No 422
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=28.95 E-value=65 Score=21.92 Aligned_cols=26 Identities=12% Similarity=0.241 Sum_probs=22.0
Q ss_pred CcEEEEEEecCCCCCccceEEEEecC
Q 019392 141 QVVNVKVIRNKQTGQSEGYGFVEFYS 166 (341)
Q Consensus 141 ~v~~i~i~~~~~~g~~~g~afV~f~~ 166 (341)
.|.++++.+-...|+-++||-|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57888888877678999999999976
No 423
>2hiy_A Hypothetical protein; COG3797, structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GOL; 1.40A {Streptococcus pneumoniae} SCOP: d.356.1.1
Probab=28.39 E-value=1e+02 Score=24.12 Aligned_cols=122 Identities=11% Similarity=-0.071 Sum_probs=63.4
Q ss_pred CeEEEcCCC----CCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEec-CHHHHHH----HHHHhCCCCCCCCC
Q 019392 116 KTIWIGDLF----HWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFY-SRAAAEK----VLQSYSGSLMPNTD 186 (341)
Q Consensus 116 ~~l~v~nLp----~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~-~~~~A~~----Al~~l~~~~~~~~~ 186 (341)
...++++|. ..+.-.+|+++|...| ..+++-.... |-.+.+-. +.+.... +|+.--|..+
T Consensus 7 yiaLLRGINVGG~nkv~MadLr~~l~~lG-f~~V~TyI~S------GNvvF~s~~~~~~l~~~ie~~l~~~fg~~v---- 75 (183)
T 2hiy_A 7 YALLVRGINVGGKNKVVMAELRQELTNLG-LEKVESYINS------GNIFFTSIDSKAQLVEKLETFFAVHYPFIQ---- 75 (183)
T ss_dssp EEEECSSCSCC-CCCCCHHHHHHHHHHHT-CEEEEEETTT------TEEEEEECSCHHHHHHHHHHHHHHHCTTCC----
T ss_pred hhhhccceecCCCCcccHHHHHHHHHHcC-CccceEEEec------CCEEEecCCCHHHHHHHHHHHHHHhcCCCC----
Confidence 456777774 5688999999999998 5677666542 33333222 3233333 3333233222
Q ss_pred CCcccc----cccccCCCCccccCCCceEEeCCCCCCCCHHHHHHHhcccCC-CeeEEEEEecCCCCCCccEEEE-Ee
Q 019392 187 QPFRLN----WATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYP-SVKGAKVIIDSNTGRTKGYGFV-RF 258 (341)
Q Consensus 187 ~~~~~~----~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~e~~G-~v~~v~i~~~~~~~~~~g~afV-~F 258 (341)
++-+. +..--.............++|-=+...++.+++.+.+. .+. ..+.+.+.. +..|+ .|
T Consensus 76 -~v~vrs~~el~~i~~~~Pf~~~~~~~~~~v~F~~~~~~~~~~~~~l~-~~~~~~E~~~~~~--------~~iy~~~~ 143 (183)
T 2hiy_A 76 -SFSLLSLEDFEAELENLPAWWSRDLARKDFLFYTEGLDVDQVIATVE-SLELKDEVLYFGK--------LGIFWGKF 143 (183)
T ss_dssp -CCEEEEHHHHHHHHTTCCGGGGSCCSEEEEEEECTTCCHHHHHHHHH-TSCCCSEEEEECS--------SEEEEEEC
T ss_pred -CEEEecHHHHHHHHHhCCCCccCCCcEEEEEEECCCCChHHHHHHhh-ccCCCCeEEEEEC--------CEEEEEEe
Confidence 11111 10000011111111345777777778888888777653 332 345555432 25677 67
No 424
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=28.11 E-value=68 Score=24.28 Aligned_cols=57 Identities=12% Similarity=0.260 Sum_probs=38.4
Q ss_pred EEeCCCCCCCCHHHHHHHhcccCC-CeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHH
Q 019392 211 IFVGDLAPDVTDSILQETFSSKYP-SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270 (341)
Q Consensus 211 l~v~nlp~~~t~~~l~~~F~e~~G-~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~ 270 (341)
-|+.-++...+..+|+..+.+.|+ .|.+|..+.-+. |.- -|||.+....+|.+....
T Consensus 89 ~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~-g~K--KAyV~La~~~dAldvAnk 146 (150)
T 4a17_R 89 TMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTIT-GNK--KAYIRLAADSDSLTLANK 146 (150)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTT-SCE--EEEEEECSSSCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCC-CcE--EEEEEcCCCCcHHHHHHh
Confidence 444456778999999888865666 367776665432 332 499999877777765443
No 425
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=27.44 E-value=52 Score=31.70 Aligned_cols=58 Identities=14% Similarity=0.138 Sum_probs=40.6
Q ss_pred CCCCCCCCHHHHHHHhcc---cCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhC
Q 019392 214 GDLAPDVTDSILQETFSS---KYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 272 (341)
Q Consensus 214 ~nlp~~~t~~~l~~~F~e---~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~ 272 (341)
+..+.+.+--||..+|.- .+|.|.++.|..-+. ...+.++++.|.|.++|.+|+..+-
T Consensus 349 ~~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~-P~~~~~~~~~f~d~~~a~~av~~i~ 409 (658)
T 4bby_A 349 CQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPT-PEYQKYGSVAFPNFEQGVACLREIA 409 (658)
T ss_dssp CCCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEEC-CSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred ccccccCCCcCHHHHhccCCCcCcceeeeeeeeccC-CccccccccccCCchhhhhhHHHHH
Confidence 344555555678888832 567788887654432 3455678999999999999987763
No 426
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=26.76 E-value=59 Score=22.02 Aligned_cols=55 Identities=9% Similarity=0.207 Sum_probs=36.8
Q ss_pred EEeCCCCCCCCHHHHHHHhcccCC-CeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHH
Q 019392 211 IFVGDLAPDVTDSILQETFSSKYP-SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAM 268 (341)
Q Consensus 211 l~v~nlp~~~t~~~l~~~F~e~~G-~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al 268 (341)
-|+-.++...+..+|++.+.+.|+ .|.+|..+.-+. +. --|||.+..-.+|....
T Consensus 24 ~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~-~~--KKA~VtL~~g~~aid~~ 79 (85)
T 1vq8_S 24 KLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMD-GE--KKAVVRLSEDDDAQEVA 79 (85)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTT-SS--EEEEEEECTTSCHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCC-Cc--eEEEEEECCCCcHHHHH
Confidence 344466789999999988865666 467776665432 22 24999998776665443
No 427
>3iz6_U 40S ribosomal protein S24 (S24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=26.19 E-value=15 Score=27.50 Aligned_cols=47 Identities=15% Similarity=0.423 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHhcccCCC-eeEEEEEe----cCCCCCCccEEEEEeCCHHHHH
Q 019392 218 PDVTDSILQETFSSKYPS-VKGAKVII----DSNTGRTKGYGFVRFGDENERS 265 (341)
Q Consensus 218 ~~~t~~~l~~~F~e~~G~-v~~v~i~~----~~~~~~~~g~afV~F~~~~~A~ 265 (341)
...+..+|++.+...|+. -.++.++. .-..|++.|||.| |+|.+.|.
T Consensus 38 aTpsk~eIrekLAk~y~~~~~d~VvV~g~rT~fGggkstGfa~I-Yds~d~aK 89 (138)
T 3iz6_U 38 ANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHFGGGKSTGFGLI-YDNLDAAK 89 (138)
T ss_dssp CCCCSHHHHHHHHHTCCCCTTCSCCCCCCCCCSSCSCCCCCCCC-SSCHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHH
Confidence 367889999988767775 33333332 2234678889876 66766654
No 428
>1x8d_A Hypothetical protein YIIL; mutarotase, L-rhamnose, biosynthetic protein; HET: RNS; 1.80A {Escherichia coli} SCOP: d.58.4.21
Probab=25.85 E-value=1.3e+02 Score=21.07 Aligned_cols=34 Identities=9% Similarity=0.154 Sum_probs=24.2
Q ss_pred HHHHHHhcccCCCeeEEEEEecCCCCCCccEEEEEeCC
Q 019392 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGD 260 (341)
Q Consensus 223 ~~l~~~F~e~~G~v~~v~i~~~~~~~~~~g~afV~F~~ 260 (341)
-+|.+.++ ..| |.+..|..+..+ ..=|++++..+
T Consensus 27 PEv~~~L~-~aG-i~~ysIfl~~~~--~~LF~~~E~~d 60 (104)
T 1x8d_A 27 PELEAVLK-SHG-AHNYAIYLDKAR--NLLFAMVEIES 60 (104)
T ss_dssp HHHHHHHH-HTT-EEEEEEEEETTT--TEEEEEEEESC
T ss_pred HHHHHHHH-HcC-CeEEEEEEECCC--CeEEEEEEEcC
Confidence 34666775 777 888888887432 23499999988
No 429
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=25.59 E-value=82 Score=22.04 Aligned_cols=26 Identities=12% Similarity=0.238 Sum_probs=21.1
Q ss_pred CeeEEEEEecCCCCCCccEEEEEeCC
Q 019392 235 SVKGAKVIIDSNTGRTKGYGFVRFGD 260 (341)
Q Consensus 235 ~v~~v~i~~~~~~~~~~g~afV~F~~ 260 (341)
.|.+|+|.+-...|+-++||=|+|.+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 47788887766668899999999974
No 430
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=25.13 E-value=86 Score=22.15 Aligned_cols=26 Identities=15% Similarity=0.216 Sum_probs=20.9
Q ss_pred CeeEEEEEecCCCCCCccEEEEEeCC
Q 019392 235 SVKGAKVIIDSNTGRTKGYGFVRFGD 260 (341)
Q Consensus 235 ~v~~v~i~~~~~~~~~~g~afV~F~~ 260 (341)
.|.+|+|.+-...|+-++||=|+|.+
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 37778877766678899999999974
No 431
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=24.99 E-value=81 Score=22.07 Aligned_cols=26 Identities=15% Similarity=0.293 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCCCCccceEEEEecC
Q 019392 141 QVVNVKVIRNKQTGQSEGYGFVEFYS 166 (341)
Q Consensus 141 ~v~~i~i~~~~~~g~~~g~afV~f~~ 166 (341)
.|.++++.+-...|+-++||-|+|.+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57888888876678999999999976
No 432
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=24.78 E-value=84 Score=22.22 Aligned_cols=26 Identities=12% Similarity=0.241 Sum_probs=21.8
Q ss_pred CcEEEEEEecCCCCCccceEEEEecC
Q 019392 141 QVVNVKVIRNKQTGQSEGYGFVEFYS 166 (341)
Q Consensus 141 ~v~~i~i~~~~~~g~~~g~afV~f~~ 166 (341)
.|.++++.+-...|+-++||-|+|.+
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 57788888877678999999999976
No 433
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=22.43 E-value=63 Score=24.55 Aligned_cols=55 Identities=11% Similarity=0.213 Sum_probs=36.8
Q ss_pred EEeCCCCCCCCHHHHHHHhcccCC-CeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHH
Q 019392 211 IFVGDLAPDVTDSILQETFSSKYP-SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAM 268 (341)
Q Consensus 211 l~v~nlp~~~t~~~l~~~F~e~~G-~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al 268 (341)
-|+..++...+..+|++.+.+.|+ .|.+|..+.-+ .|.- -|||.+....+|.+..
T Consensus 91 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~-~g~K--KAyV~L~~~~daldvA 146 (152)
T 3iz5_X 91 TLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRP-DGKK--KAYVKLTPDYDALDVA 146 (152)
T ss_dssp EEEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECT-TSSE--EEEEEECTTSCHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcC-CCce--EEEEEcCCCCcHHHHH
Confidence 444456678888888887755566 36777666543 2322 4999998877776654
No 434
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=22.04 E-value=2.1e+02 Score=23.42 Aligned_cols=80 Identities=14% Similarity=0.240 Sum_probs=45.6
Q ss_pred CCceEEeCCCCCCCC--HHHH----HHHhcccCCCe--------eEEEEEe---cCCCCCCccEEEEEeCCHHHHHHHHH
Q 019392 207 SDLSIFVGDLAPDVT--DSIL----QETFSSKYPSV--------KGAKVII---DSNTGRTKGYGFVRFGDENERSRAMT 269 (341)
Q Consensus 207 ~~~~l~v~nlp~~~t--~~~l----~~~F~e~~G~v--------~~v~i~~---~~~~~~~~g~afV~F~~~~~A~~Al~ 269 (341)
..+.|.|-+||.... +..+ .+++.|.|..+ .++.-.. +.....+| .-.|.|....+=++.|.
T Consensus 51 Rr~NIRIiGVPEgee~~~kgaenlf~eII~EnfPnL~ke~diqV~ea~Rsp~~~~~kr~tPR-~IIvK~~~~~~KErILk 129 (233)
T 2yko_A 51 KRPNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPR-HIIVRFTKVEMKEKMLR 129 (233)
T ss_dssp TTTEEEEESCCCCTTCCHHHHHHHHHHHHHHHCTTCC---CCCEEEEEEC-------CCSCC-CEEEEESSHHHHHHHHH
T ss_pred cccceeEeecCCCcccccccHHHHHHHHHHHhCCCCccccceeeechhcCCCCCCCCCCCCC-eEEEEecccccHHHHHH
Confidence 446899999999876 3333 44444446543 3332111 11111233 57788877776555554
Q ss_pred Hh---CCeeecCccEEEEecC
Q 019392 270 EM---NGVYCSSRPMRIDVAT 287 (341)
Q Consensus 270 ~l---~~~~i~g~~i~v~~a~ 287 (341)
+. ....+.|.+|+++-.-
T Consensus 130 aaR~k~~vtykG~pIrlsaDf 150 (233)
T 2yko_A 130 AAREKGRVTLKGKPIRLTVDL 150 (233)
T ss_dssp HHHTTSCEEETTEEEEEEECC
T ss_pred HHHHhcccccCCCceEEeCCC
Confidence 44 4577889999887543
No 435
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=21.90 E-value=1e+02 Score=23.49 Aligned_cols=56 Identities=13% Similarity=0.237 Sum_probs=37.5
Q ss_pred EEeCCCCCCCCHHHHHHHhcccCC-CeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHH
Q 019392 211 IFVGDLAPDVTDSILQETFSSKYP-SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269 (341)
Q Consensus 211 l~v~nlp~~~t~~~l~~~F~e~~G-~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~ 269 (341)
-|+-.++...+..+|++.+.+.|+ .|.+|..+.-.. |. --|||.+....+|.....
T Consensus 95 ~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~-~~--KKAiVtL~~g~~aid~~~ 151 (156)
T 2zkr_s 95 TLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPD-GE--KKAYVRLAPDYDALDVAN 151 (156)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSS-SC--EEEEEEECTTSCHHHHHH
T ss_pred cEEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCC-Cc--eEEEEEECCCCcHHHHHH
Confidence 445567789999999988865666 367776655422 22 249999987766655443
No 436
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=21.39 E-value=81 Score=26.45 Aligned_cols=33 Identities=6% Similarity=0.238 Sum_probs=26.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEE
Q 019392 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVI 148 (341)
Q Consensus 115 ~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~ 148 (341)
...+.|+|||+.++..-|.+++.. ..+..+.++
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm 142 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFARLVFL 142 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCEEEEE
Confidence 356899999999999999999987 555544443
No 437
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=21.08 E-value=69 Score=21.89 Aligned_cols=33 Identities=18% Similarity=0.162 Sum_probs=25.6
Q ss_pred eeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCC
Q 019392 236 VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273 (341)
Q Consensus 236 v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l~~ 273 (341)
|.++.+.. ...||-||++...++...+++...|
T Consensus 40 i~~v~vP~-----~fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 40 VYSILASE-----SLKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp EEEEEECT-----TSTTEEEEEESSHHHHHHHHTTCTT
T ss_pred EEEEEEec-----ccCCEEEEEEecchhHHHHHHCCCC
Confidence 55555543 3689999999999999888877766
No 438
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=20.73 E-value=49 Score=21.19 Aligned_cols=11 Identities=36% Similarity=0.474 Sum_probs=8.8
Q ss_pred CccEEEEEeCC
Q 019392 250 TKGYGFVRFGD 260 (341)
Q Consensus 250 ~~g~afV~F~~ 260 (341)
.+|.|+|.|.|
T Consensus 40 ~~gtC~V~F~D 50 (66)
T 2eqj_A 40 LKQSCFIIFED 50 (66)
T ss_dssp TTTEEEEEETT
T ss_pred CCcEEEEEEcc
Confidence 35789999986
No 439
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=20.70 E-value=1.3e+02 Score=23.03 Aligned_cols=37 Identities=30% Similarity=0.335 Sum_probs=26.8
Q ss_pred CCHHHHHHHhcccCCCee---EEEEEecCCCCCCccEEEEE
Q 019392 220 VTDSILQETFSSKYPSVK---GAKVIIDSNTGRTKGYGFVR 257 (341)
Q Consensus 220 ~t~~~l~~~F~e~~G~v~---~v~i~~~~~~~~~~g~afV~ 257 (341)
+|+++|+++-+ ..|.+. ++.+..|..+|+.+.+||-+
T Consensus 3 ~t~~~L~~~A~-~~gta~trVR~~~~~de~~G~~~v~gv~T 42 (157)
T 3mfb_A 3 LTPEKLLEAAN-KQGTVPSRVRYQWMEDEETGRLKAVGYHT 42 (157)
T ss_dssp CCHHHHHHHHH-TTCEEEBSEEEEEEECTTTCCEEEEEEEC
T ss_pred cCHHHHHHHHH-hCCcccccEEEEEEecCCCCcEEEEEEEC
Confidence 68999999985 888764 34555664478888777653
No 440
>2gu3_A YPMB protein; APC1927, structural genomics, PSI, protein structure initiat midwest center for structural genomics, MCSG, unknown funct; 1.74A {Bacillus subtilis subsp} SCOP: d.17.1.6 d.17.1.6
Probab=20.68 E-value=1e+02 Score=22.82 Aligned_cols=48 Identities=6% Similarity=0.118 Sum_probs=32.6
Q ss_pred eCCCCCCCCHHHHHHHhcccCC--CeeEEEEEecC----------CCCCCccEEEEEeCC
Q 019392 213 VGDLAPDVTDSILQETFSSKYP--SVKGAKVIIDS----------NTGRTKGYGFVRFGD 260 (341)
Q Consensus 213 v~nlp~~~t~~~l~~~F~e~~G--~v~~v~i~~~~----------~~~~~~g~afV~F~~ 260 (341)
|..+...++++++++.+...++ .|.++.+-... ......+|-|+.|+|
T Consensus 68 v~~~~~GiSe~~a~~~v~~~~~~~~I~~v~lG~~~~~pVWEV~Y~~~~~~~~Y~~~~F~~ 127 (136)
T 2gu3_A 68 SKEAKEGISEDKAAKIIKDEGLVSKQKEVHLAREGNVLLWEVTYLDKEGQYSLSYVDFTT 127 (136)
T ss_dssp EEEGGGSCCHHHHHHHHHHTTCCSEEEEEEEEEETTEEEEEEEEECTTSCEEEEEEETTT
T ss_pred EEEHhhCCCHHHHHHHHHHhCCccceeEEeeeeECCEEEEEEEEEccCCcEEEEEEEeeC
Confidence 7778889999999999953555 46666543322 113345788999876
No 441
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=20.28 E-value=2.1e+02 Score=19.41 Aligned_cols=56 Identities=11% Similarity=0.031 Sum_probs=36.6
Q ss_pred EEeCCCCCCCCHHHHHHHhcccCCCe--eEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHh
Q 019392 211 IFVGDLAPDVTDSILQETFSSKYPSV--KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEM 271 (341)
Q Consensus 211 l~v~nlp~~~t~~~l~~~F~e~~G~v--~~v~i~~~~~~~~~~g~afV~F~~~~~A~~Al~~l 271 (341)
+.+-.+|.+++-++|.+.+.+.|+-. ..+.+..--+.| -+|.+.+-++-..|+..+
T Consensus 17 i~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeG-----D~itisSd~EL~eAl~l~ 74 (89)
T 1vd2_A 17 IMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEG-----DPCTVSSQLELEEAFRLY 74 (89)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSSS-----CCEECCSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCCC-----CcccccCHHHHHHHHHHH
Confidence 44556788899988877776666632 223333211223 468999999999999754
No 442
>4a8j_B Elongator complex protein 5; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_B
Probab=20.15 E-value=2.5e+02 Score=23.47 Aligned_cols=50 Identities=14% Similarity=0.331 Sum_probs=39.5
Q ss_pred CCCeEEEcCCCC-CCCHHHHHHHHHhcC-------CcEEEEEEecCCCCCccceEEEE
Q 019392 114 ETKTIWIGDLFH-WMDETFLHNCFSHTG-------QVVNVKVIRNKQTGQSEGYGFVE 163 (341)
Q Consensus 114 ~~~~l~v~nLp~-~~te~~l~~~f~~~G-------~v~~i~i~~~~~~g~~~g~afV~ 163 (341)
.+..+-|..+.. .++||+|...+++|- ++-.+.+...+++|++-.|.|.-
T Consensus 165 ATTIl~v~~~~~~~~deE~l~~~l~k~~~P~glN~~~f~l~ltnrRKSGRsl~y~f~i 222 (270)
T 4a8j_B 165 ATTIVDIDVVLTGTLDTEEVSELLNEFRIPRGLNNDIFQLRLVNKRKSGRSLEYDFIV 222 (270)
T ss_dssp CSEEEEEEECCCSSCCHHHHHHHHHTTCCCSSCSCSEEEEEEEEECTTSCEEEEEEEE
T ss_pred hhheEEEecCCCCCccHHHHHHHhhheecccccCCCeEEEEEEeccccCcceEEEEEE
Confidence 345677887775 679999999999873 66778888888899998888864
No 443
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=20.15 E-value=1.7e+02 Score=18.13 Aligned_cols=55 Identities=9% Similarity=-0.107 Sum_probs=41.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCccceEEEEecCHHHHHHHHHH
Q 019392 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176 (341)
Q Consensus 115 ~~~l~v~nLp~~~te~~l~~~f~~~G~v~~i~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~ 176 (341)
..++.|.++.-..=...|.+.+.. ..|..+.+.... +.+.|.|.+.+....+++.
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~------~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNE------AVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSE------EEEEEEGGGHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccC------CEEEEEECCHHHHHHHHHH
Confidence 356889998877777888999988 778887775432 5678888866666677765
Done!