BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019393
         (341 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A2A3V1|AK17B_MOUSE A-kinase anchor protein 17B OS=Mus musculus GN=Akap17b PE=1 SV=2
          Length = 959

 Score = 58.5 bits (140), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 77/160 (48%), Gaps = 19/160 (11%)

Query: 131 KMDGIELNLEGVKYKLSVVIPIADDFEKMRKDWEEFYAFGNRGYSRGKQE------PDTI 184
           K+ G  + L G+K  L VV   A      + +WE F          G +E      PD+I
Sbjct: 94  KLHGKIIKLNGLKTDLKVVATDA------QGEWEHFPKEKEASVIEGAEEQDHDKGPDSI 147

Query: 185 VIKGVPSRWFAEPRVSS--KPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDG--GDI 240
             +G+P +WFA P+ SS  KP   +   VF +FGKI+N+++    DP ++    G  G +
Sbjct: 148 YFEGLPCKWFA-PKGSSGEKPCEEILRVVFESFGKIKNVDIPM-LDPYREVMTGGSFGGL 205

Query: 241 ISGLHC-KIVVQFEKYRDFYNTLKVLCGRSMQKQGSQLKA 279
             GL   +  +Q+++  DF   ++ L G  +  +G   KA
Sbjct: 206 NFGLQTFEAFIQYQESTDFIKAMESLRGMKLMLKGDDGKA 245


>sp|Q02040|AK17A_HUMAN A-kinase anchor protein 17A OS=Homo sapiens GN=AKAP17A PE=1 SV=2
          Length = 695

 Score = 53.1 bits (126), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 80/178 (44%), Gaps = 10/178 (5%)

Query: 126 KYIVEKMDGIELNLEGVKYKLSV-VIPIADDFEKMRKDWEEFYAFG-NRGYSRGKQEPDT 183
           K  +  +DG  + L G    L V       DF   R DW+ F+    +   +   + PDT
Sbjct: 90  KSFLACLDGKTIKLSGFSDILKVRAAEFKIDF-PTRHDWDSFFRDAKDMNETLPGERPDT 148

Query: 184 IVIKGVPSRWFA-EPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIIS 242
           I ++G+P +WFA +   S KPS  V   VF  FG+IRN+++   D   ++         S
Sbjct: 149 IHLEGLPCKWFALKESGSEKPSEDVLVKVFEKFGEIRNVDIPMLDPYREEMTGRNFHTFS 208

Query: 243 ---GLHCKIVVQFEKYRDFYNTLKVLCGRSMQKQGSQLKA---DYEVTWDKDGFFWDS 294
               L+ +  VQ+ +Y  F   +  L G  +  +G   KA   + +V++D      D+
Sbjct: 209 FGGHLNFEAYVQYREYMGFIQAMSALRGMKLMYKGEDGKAVACNIKVSFDSTKHLSDA 266


>sp|A4FXH7|TRPA_METM5 Tryptophan synthase alpha chain OS=Methanococcus maripaludis
           (strain C5 / ATCC BAA-1333) GN=trpA PE=3 SV=1
          Length = 259

 Score = 32.7 bits (73), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 23/37 (62%)

Query: 305 MPLKTARQYRSETSRHEVYSSQLAADHTRRKRFKVKD 341
           +PL+ A +YR    +HE+ +  LAA +T  +R K+ D
Sbjct: 116 LPLQEATEYREICKKHEMGTVFLAAPNTPEERLKISD 152


>sp|A6VFT8|TRPA_METM7 Tryptophan synthase alpha chain OS=Methanococcus maripaludis
           (strain C7 / ATCC BAA-1331) GN=trpA PE=3 SV=1
          Length = 259

 Score = 32.7 bits (73), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 23/37 (62%)

Query: 305 MPLKTARQYRSETSRHEVYSSQLAADHTRRKRFKVKD 341
           +PL+ A +YR    +HE+ +  LAA +T  +R K+ D
Sbjct: 116 LPLQEATEYREICKKHEMGTVFLAAPNTPEERLKISD 152


>sp|Q6LYI9|TRPA_METMP Tryptophan synthase alpha chain OS=Methanococcus maripaludis
           (strain S2 / LL) GN=trpA PE=3 SV=1
          Length = 258

 Score = 32.3 bits (72), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 23/37 (62%)

Query: 305 MPLKTARQYRSETSRHEVYSSQLAADHTRRKRFKVKD 341
           +PL+ A +YR    +HE+ +  LAA +T  +R K+ D
Sbjct: 116 LPLQEATEYRKICKKHEMGTVFLAAPNTPEERLKISD 152


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.135    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 133,889,749
Number of Sequences: 539616
Number of extensions: 5908397
Number of successful extensions: 15684
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 15677
Number of HSP's gapped (non-prelim): 23
length of query: 341
length of database: 191,569,459
effective HSP length: 118
effective length of query: 223
effective length of database: 127,894,771
effective search space: 28520533933
effective search space used: 28520533933
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)