Query 019393
Match_columns 341
No_of_seqs 93 out of 95
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 09:06:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019393.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019393hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2891 Surface glycoprotein [ 100.0 1.4E-83 3.1E-88 612.4 6.4 255 4-299 9-278 (445)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 98.9 8.2E-09 1.8E-13 97.9 12.2 80 183-290 271-350 (352)
3 PF00076 RRM_1: RNA recognitio 98.7 4.7E-08 1E-12 71.1 6.4 69 184-277 1-69 (70)
4 PLN03134 glycine-rich RNA-bind 98.6 2.3E-07 4.9E-12 80.8 9.3 80 178-281 31-110 (144)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 98.5 2.9E-07 6.3E-12 87.4 8.7 78 180-281 2-79 (352)
6 smart00362 RRM_2 RNA recogniti 98.5 7.1E-07 1.5E-11 63.0 8.0 71 183-279 1-71 (72)
7 smart00360 RRM RNA recognition 98.4 1.2E-06 2.6E-11 61.5 7.3 70 186-279 1-70 (71)
8 cd00590 RRM RRM (RNA recogniti 98.4 1.8E-06 3.8E-11 61.3 8.2 73 183-280 1-73 (74)
9 TIGR01622 SF-CC1 splicing fact 98.4 1.1E-06 2.3E-11 86.9 8.8 78 181-282 186-263 (457)
10 TIGR01645 half-pint poly-U bin 98.4 2.2E-06 4.8E-11 90.4 11.3 80 180-283 203-282 (612)
11 TIGR01642 U2AF_lg U2 snRNP aux 98.3 2.6E-06 5.6E-11 85.2 9.2 80 178-281 292-371 (509)
12 TIGR01659 sex-lethal sex-letha 98.2 4.3E-06 9.4E-11 82.5 8.6 75 182-280 108-182 (346)
13 TIGR01659 sex-lethal sex-letha 98.2 7.7E-06 1.7E-10 80.8 9.1 81 181-287 193-273 (346)
14 TIGR01645 half-pint poly-U bin 98.1 6.6E-06 1.4E-10 87.0 8.2 75 182-280 108-182 (612)
15 PF13893 RRM_5: RNA recognitio 98.1 9.9E-06 2.1E-10 58.5 6.7 55 208-281 1-55 (56)
16 PF14259 RRM_6: RNA recognitio 98.1 1E-05 2.2E-10 60.0 6.8 69 184-277 1-69 (70)
17 TIGR01628 PABP-1234 polyadenyl 98.1 3.1E-05 6.8E-10 79.2 12.7 128 126-281 233-360 (562)
18 PLN03120 nucleic acid binding 98.1 1E-05 2.3E-10 77.7 8.5 76 183-286 6-81 (260)
19 smart00361 RRM_1 RNA recogniti 98.0 1.4E-05 3E-10 60.8 6.5 60 206-279 3-69 (70)
20 TIGR01628 PABP-1234 polyadenyl 98.0 1.5E-05 3.2E-10 81.5 8.5 73 183-279 2-74 (562)
21 TIGR01642 U2AF_lg U2 snRNP aux 98.0 4.7E-05 1E-09 76.2 11.8 87 181-281 409-498 (509)
22 KOG0127 Nucleolar protein fibr 98.0 1.6E-05 3.4E-10 82.9 8.0 126 130-287 70-198 (678)
23 KOG4207 Predicted splicing fac 98.0 1.2E-05 2.6E-10 75.7 6.3 73 183-279 15-87 (256)
24 TIGR01622 SF-CC1 splicing fact 98.0 2.2E-05 4.9E-10 77.6 8.5 73 182-279 90-162 (457)
25 TIGR01648 hnRNP-R-Q heterogene 98.0 1.4E-05 3.1E-10 84.0 7.4 77 179-279 56-132 (578)
26 TIGR01649 hnRNP-L_PTB hnRNP-L/ 97.9 3.5E-05 7.5E-10 78.3 8.8 70 183-281 277-347 (481)
27 PLN03213 repressor of silencin 97.9 3.8E-05 8.3E-10 79.6 9.0 76 178-281 7-84 (759)
28 KOG0111 Cyclophilin-type pepti 97.9 1E-05 2.2E-10 76.9 4.4 77 181-281 10-86 (298)
29 TIGR01649 hnRNP-L_PTB hnRNP-L/ 97.9 5.2E-05 1.1E-09 77.1 8.7 71 183-281 4-74 (481)
30 TIGR01648 hnRNP-R-Q heterogene 97.8 0.00018 3.9E-09 75.9 11.9 75 180-286 232-308 (578)
31 KOG0126 Predicted RNA-binding 97.7 9E-06 2E-10 75.3 -0.1 103 127-280 8-110 (219)
32 COG0724 RNA-binding proteins ( 97.6 0.00035 7.6E-09 59.9 8.4 80 181-284 115-194 (306)
33 KOG0125 Ataxin 2-binding prote 97.5 0.00021 4.5E-09 71.0 6.9 76 179-280 94-169 (376)
34 KOG0117 Heterogeneous nuclear 97.4 0.00026 5.6E-09 72.6 6.5 82 179-292 257-338 (506)
35 PLN03121 nucleic acid binding 97.4 0.00057 1.2E-08 65.3 8.3 67 182-276 6-72 (243)
36 KOG0107 Alternative splicing f 97.4 0.00045 9.7E-09 63.7 7.1 67 183-278 12-78 (195)
37 KOG0130 RNA-binding protein RB 97.3 0.00038 8.3E-09 62.3 4.8 71 198-286 79-149 (170)
38 KOG0147 Transcriptional coacti 97.2 0.00059 1.3E-08 71.2 6.7 72 184-279 281-352 (549)
39 KOG0113 U1 small nuclear ribon 97.2 0.0018 3.8E-08 63.9 9.5 82 178-283 98-179 (335)
40 KOG0110 RNA-binding protein (R 96.7 0.0016 3.5E-08 69.8 4.6 75 182-280 614-688 (725)
41 KOG0114 Predicted RNA-binding 96.7 0.0098 2.1E-07 51.3 8.1 84 179-289 16-99 (124)
42 KOG0108 mRNA cleavage and poly 96.7 0.0052 1.1E-07 63.1 7.6 82 182-287 19-100 (435)
43 KOG0131 Splicing factor 3b, su 96.5 0.0056 1.2E-07 56.9 6.2 76 182-281 10-85 (203)
44 KOG0145 RNA-binding protein EL 96.5 0.012 2.7E-07 57.5 8.3 68 201-282 288-355 (360)
45 KOG0127 Nucleolar protein fibr 96.4 0.012 2.6E-07 62.2 8.0 84 182-287 293-380 (678)
46 KOG0149 Predicted RNA-binding 95.9 0.016 3.4E-07 55.6 5.9 77 180-281 11-87 (247)
47 KOG0122 Translation initiation 95.6 0.03 6.4E-07 54.2 6.3 67 183-271 191-257 (270)
48 KOG0124 Polypyrimidine tract-b 95.3 0.025 5.4E-07 57.6 5.2 63 204-280 126-188 (544)
49 KOG0105 Alternative splicing f 95.3 0.039 8.4E-07 51.9 5.9 79 181-290 6-84 (241)
50 KOG0120 Splicing factor U2AF, 95.2 0.052 1.1E-06 56.8 7.3 63 208-281 426-488 (500)
51 KOG0117 Heterogeneous nuclear 95.1 0.094 2E-06 54.4 8.5 80 182-284 84-163 (506)
52 KOG0121 Nuclear cap-binding pr 95.0 0.08 1.7E-06 47.3 6.8 81 179-287 34-114 (153)
53 KOG0144 RNA-binding protein CU 94.8 0.058 1.2E-06 55.8 6.3 66 184-271 37-102 (510)
54 KOG0110 RNA-binding protein (R 94.6 0.093 2E-06 56.7 7.2 78 183-282 517-595 (725)
55 KOG0116 RasGAP SH3 binding pro 94.5 0.075 1.6E-06 54.6 6.1 78 181-283 288-365 (419)
56 KOG0144 RNA-binding protein CU 94.4 0.046 1E-06 56.5 4.4 115 128-289 92-206 (510)
57 KOG0148 Apoptosis-promoting RN 94.3 0.13 2.9E-06 50.6 7.2 83 161-280 151-233 (321)
58 KOG4212 RNA-binding protein hn 94.3 0.1 2.3E-06 54.2 6.6 75 178-281 533-607 (608)
59 KOG4660 Protein Mei2, essentia 94.0 0.05 1.1E-06 57.3 3.8 67 183-278 77-143 (549)
60 KOG4206 Spliceosomal protein s 94.0 0.19 4.2E-06 47.8 7.3 67 179-270 6-77 (221)
61 KOG0106 Alternative splicing f 93.8 0.081 1.8E-06 50.1 4.4 110 127-279 50-165 (216)
62 PF08777 RRM_3: RNA binding mo 93.8 0.18 3.9E-06 42.2 6.0 58 202-277 12-72 (105)
63 KOG0109 RNA-binding protein LA 93.6 0.13 2.9E-06 51.0 5.7 73 181-289 2-74 (346)
64 KOG2314 Translation initiation 92.7 0.15 3.3E-06 54.3 4.8 85 183-287 60-146 (698)
65 KOG1190 Polypyrimidine tract-b 91.8 0.18 3.8E-06 52.1 3.9 66 202-287 161-226 (492)
66 PF14605 Nup35_RRM_2: Nup53/35 91.2 0.52 1.1E-05 34.9 4.9 53 181-262 1-53 (53)
67 KOG0132 RNA polymerase II C-te 91.0 0.67 1.5E-05 51.0 7.5 62 183-272 423-484 (894)
68 KOG0123 Polyadenylate-binding 91.0 0.65 1.4E-05 46.8 7.0 71 178-271 164-234 (369)
69 KOG0145 RNA-binding protein EL 91.0 0.51 1.1E-05 46.6 6.0 78 182-287 42-119 (360)
70 KOG0148 Apoptosis-promoting RN 90.9 0.58 1.3E-05 46.3 6.3 62 203-278 74-135 (321)
71 KOG0112 Large RNA-binding prot 90.2 0.28 6E-06 54.5 3.8 70 204-295 468-537 (975)
72 KOG0153 Predicted RNA-binding 89.8 1.1 2.4E-05 45.4 7.3 88 178-298 225-313 (377)
73 COG5175 MOT2 Transcriptional r 89.6 0.59 1.3E-05 47.5 5.3 100 182-296 115-214 (480)
74 KOG0533 RRM motif-containing p 89.5 1.7 3.8E-05 41.8 8.2 82 178-284 80-161 (243)
75 KOG1190 Polypyrimidine tract-b 88.1 1.2 2.7E-05 46.1 6.5 64 201-287 308-371 (492)
76 KOG0123 Polyadenylate-binding 87.9 1.3 2.7E-05 44.8 6.4 55 201-270 8-62 (369)
77 KOG0131 Splicing factor 3b, su 86.6 2.8 6.1E-05 39.4 7.4 81 204-300 109-189 (203)
78 KOG0124 Polypyrimidine tract-b 85.5 1.3 2.9E-05 45.5 5.1 53 202-266 221-273 (544)
79 KOG4209 Splicing factor RNPS1, 85.5 1.3 2.9E-05 42.0 4.8 61 208-283 118-178 (231)
80 KOG0146 RNA-binding protein ET 84.0 3.2 7E-05 41.3 6.8 68 201-281 29-97 (371)
81 KOG0120 Splicing factor U2AF, 83.2 1.3 2.9E-05 46.7 4.1 71 178-270 286-356 (500)
82 KOG2891 Surface glycoprotein [ 82.8 0.19 4.1E-06 50.0 -2.1 25 275-299 301-326 (445)
83 KOG0147 Transcriptional coacti 82.7 1.3 2.9E-05 47.0 3.8 54 205-271 193-246 (549)
84 KOG4208 Nucleolar RNA-binding 80.4 9.2 0.0002 36.5 8.1 78 178-279 46-124 (214)
85 KOG1855 Predicted RNA-binding 79.7 2 4.2E-05 44.8 3.8 71 183-265 233-306 (484)
86 KOG2202 U2 snRNP splicing fact 78.6 1.6 3.5E-05 42.6 2.6 57 210-281 87-144 (260)
87 KOG0415 Predicted peptidyl pro 78.0 2.6 5.6E-05 43.3 4.0 49 205-265 253-301 (479)
88 PF04059 RRM_2: RNA recognitio 75.9 19 0.00041 30.2 7.9 67 183-271 3-71 (97)
89 KOG4205 RNA-binding protein mu 74.4 3.5 7.6E-05 41.1 3.8 61 181-263 97-157 (311)
90 PF15023 DUF4523: Protein of u 73.1 9.8 0.00021 34.8 5.9 71 182-282 87-159 (166)
91 KOG3152 TBP-binding protein, a 71.7 1.9 4.1E-05 42.3 1.2 80 180-270 73-153 (278)
92 KOG4454 RNA binding protein (R 67.0 8.6 0.00019 37.4 4.5 65 183-271 11-75 (267)
93 KOG4661 Hsp27-ERE-TATA-binding 62.9 13 0.00029 40.4 5.4 53 206-270 420-472 (940)
94 KOG2068 MOT2 transcription fac 61.5 3.5 7.6E-05 41.5 0.8 62 210-282 99-160 (327)
95 KOG4210 Nuclear localization s 58.8 9.1 0.0002 37.4 3.2 70 178-270 181-251 (285)
96 KOG0146 RNA-binding protein ET 57.8 14 0.0003 37.0 4.1 81 178-282 280-362 (371)
97 KOG0109 RNA-binding protein LA 57.3 15 0.00033 37.0 4.4 66 183-280 80-145 (346)
98 KOG1457 RNA binding protein (c 54.7 15 0.00033 35.8 3.8 64 182-271 211-274 (284)
99 KOG0151 Predicted splicing reg 54.1 32 0.00069 38.4 6.5 85 183-294 176-262 (877)
100 KOG0129 Predicted RNA-binding 53.9 35 0.00077 36.4 6.6 60 183-264 372-432 (520)
101 KOG4211 Splicing factor hnRNP- 53.7 29 0.00063 36.9 5.9 61 182-265 104-165 (510)
102 KOG0226 RNA-binding proteins [ 46.4 26 0.00057 34.7 4.1 67 191-270 191-257 (290)
103 KOG1548 Transcription elongati 45.1 80 0.0017 32.6 7.3 79 179-281 263-348 (382)
104 KOG4211 Splicing factor hnRNP- 39.3 88 0.0019 33.5 6.8 62 178-266 7-70 (510)
105 KOG4212 RNA-binding protein hn 37.9 1.3E+02 0.0028 32.2 7.7 75 178-279 41-118 (608)
106 KOG1996 mRNA splicing factor [ 37.3 72 0.0016 32.4 5.6 63 208-283 303-366 (378)
107 PF14111 DUF4283: Domain of un 34.0 26 0.00057 29.4 1.8 40 179-227 102-141 (153)
108 KOG4205 RNA-binding protein mu 33.2 45 0.00098 33.3 3.5 61 182-264 7-67 (311)
109 KOG1457 RNA binding protein (c 30.8 41 0.0009 33.0 2.7 24 248-271 80-103 (284)
110 KOG0106 Alternative splicing f 29.1 46 0.001 31.8 2.7 60 184-273 4-63 (216)
111 PF11736 DUF3299: Protein of u 28.2 31 0.00067 30.8 1.3 22 126-147 47-68 (146)
112 PF03467 Smg4_UPF3: Smg-4/UPF3 25.9 1.9E+02 0.0041 26.3 5.9 82 181-283 7-94 (176)
113 PF05172 Nup35_RRM: Nup53/35/4 24.2 1.6E+02 0.0035 24.7 4.8 53 204-262 18-71 (100)
No 1
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=100.00 E-value=1.4e-83 Score=612.39 Aligned_cols=255 Identities=25% Similarity=0.448 Sum_probs=233.9
Q ss_pred CCCC-CCCceeecCCCeeeeceeeEEEEEe-cCCCCCCCCCChHHHHHHHHHhhccCCccceeccCCcchhhhhhhhhcc
Q 019393 4 LDSL-PPTEALEIENGLKLVPRMKLTLTIN-PATPSATKPIDEWQLKRALTDFLKTSLSVPITVPEEDLEIRRFRDLKKR 81 (341)
Q Consensus 4 ~~~~-~~~e~l~l~~gLyLkP~akl~Isv~-P~~~~~gksIsnWevme~L~~~~~~~~~~sl~v~~stl~~~Rf~dL~~r 81 (341)
+.|+ |+++.+|..+||||||+++++|||. |+++.||+|||||+|||+|+.+|.|+||.|++|.+|++++|+|
T Consensus 9 ld~lgseaedf~kaq~lylkpia~ikisv~lpql~ipgksisnwdlmerlk~aid~~q~dsckiresnid~iif------ 82 (445)
T KOG2891|consen 9 LDDLGSEAEDFCKAQGLYLKPIAKIKISVALPQLKIPGKSISNWDLMERLKGAIDNHQFDSCKIRESNIDFIIF------ 82 (445)
T ss_pred HhhhhhHHHhhhhhcceeeccceeEEEEEecccccCCCcccchHHHHHHHHhhcccccccceeecccccceEEe------
Confidence 4566 8999999999999999999999999 9999999999999999999999999999999999999999997
Q ss_pred cCCCCCcccceeeeehhhhhhcccCCCchhhHHHHHHHhhhhHHHHHHhhccCeeEEecCccceeEEEcccC-CCchhhh
Q 019393 82 KRDDPVAHGNLFIRDFEFLHKTRRKNADEETDLKVLEKQLSDWKKYIVEKMDGIELNLEGVKYKLSVVIPIA-DDFEKMR 160 (341)
Q Consensus 82 kR~~pva~g~L~i~~~~~lr~~~~~~~e~e~e~k~l~~~~~~~~~~l~~kLdG~~lkLsGf~~~LkV~a~es-~dFp~~r 160 (341)
|+|.+++.++++| +++|||++||||||.++|+|+++|+ .||| +|
T Consensus 83 ---------------------------eael~n~gimkk~-------l~~ldgfsiklsgfad~lkvka~eakidfp-sr 127 (445)
T KOG2891|consen 83 ---------------------------EAELENKGIMKKF-------LACLDGFSIKLSGFADILKVKAAEAKIDFP-SR 127 (445)
T ss_pred ---------------------------eHhhhhhhHHHHH-------HHHhcCCeeeecccchHHhhhHHhhcCCCC-cc
Confidence 9999999997655 7999999999999999999999996 9999 99
Q ss_pred hcHHHHhhccCC-CCCCCCCCCCeEEEcCCccccccCCC--CCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCC-
Q 019393 161 KDWEEFYAFGNR-GYSRGKQEPDTIVIKGVPSRWFAEPR--VSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADED- 236 (341)
Q Consensus 161 hdWesff~d~~~-~~~~~geRPDTI~l~gLP~rWFa~~~--~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~- 236 (341)
||||+||+++++ +.+.+|||||||||.||||+|||-+. +..-|||.+|+.+|++||.|||||||||||||+.|++.
T Consensus 128 hdwdd~fm~~kdmdemkpgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~ki 207 (445)
T KOG2891|consen 128 HDWDDFFMDAKDMDEMKPGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKI 207 (445)
T ss_pred cchHHHHhhhhhhhccCCCCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCcc
Confidence 999999999995 44444999999999999999999543 35679999999999999999999999999999998644
Q ss_pred CC------CcccceeEEEEEEeccchHHHHHHHHhcCccceec--CceeEEEEEEeecccCCCcccccchH
Q 019393 237 GG------DIISGLHCKIVVQFEKYRDFYNTLKVLCGRSMQKQ--GSQLKADYEVTWDKDGFFWDSRNQAE 299 (341)
Q Consensus 237 ~g------~~~~gL~feayVQy~ey~~F~kAM~aLrGmKL~~k--Gk~l~a~ikV~fD~tkhlS~~~i~~~ 299 (341)
+| +++++|+|||||||.||.||..||++||||||+++ |..|.||+|||||++.|||+.||-++
T Consensus 208 sgiq~~gfg~g~dlffeayvqfmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrsrhlsevqiakr 278 (445)
T KOG2891|consen 208 SGIQFHGFGFGGDLFFEAYVQFMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRSRHLSEVQIAKR 278 (445)
T ss_pred ccceeeccccCcchhHHHHHHHHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchhhhhhHHHHHHH
Confidence 33 35566899999999999999999999999999997 47999999999999999999999443
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=98.95 E-value=8.2e-09 Score=97.87 Aligned_cols=80 Identities=18% Similarity=0.303 Sum_probs=67.8
Q ss_pred eEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHH
Q 019393 183 TIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTL 262 (341)
Q Consensus 183 TI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM 262 (341)
+|+|.|||..| +++-|+.+|++||.|.+|.|+-+...+.. .|+ |||+|....+..+||
T Consensus 271 ~lfV~NL~~~~----------~e~~L~~~F~~fG~v~~v~i~~d~~t~~s---------kG~---aFV~F~~~~~A~~Ai 328 (352)
T TIGR01661 271 CIFVYNLSPDT----------DETVLWQLFGPFGAVQNVKIIRDLTTNQC---------KGY---GFVSMTNYDEAAMAI 328 (352)
T ss_pred EEEEeCCCCCC----------CHHHHHHHHHhCCCeEEEEEeEcCCCCCc---------cce---EEEEECCHHHHHHHH
Confidence 69999999998 89999999999999999999976555543 378 999999999999999
Q ss_pred HHhcCccceecCceeEEEEEEeecccCC
Q 019393 263 KVLCGRSMQKQGSQLKADYEVTWDKDGF 290 (341)
Q Consensus 263 ~aLrGmKL~~kGk~l~a~ikV~fD~tkh 290 (341)
++|.|..| .|+.+. |+|-++++
T Consensus 329 ~~lnG~~~--~gr~i~----V~~~~~~~ 350 (352)
T TIGR01661 329 LSLNGYTL--GNRVLQ----VSFKTNKA 350 (352)
T ss_pred HHhCCCEE--CCeEEE----EEEccCCC
Confidence 99999998 787554 55555444
No 3
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=98.69 E-value=4.7e-08 Score=71.08 Aligned_cols=69 Identities=28% Similarity=0.502 Sum_probs=59.2
Q ss_pred EEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHHH
Q 019393 184 IVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTLK 263 (341)
Q Consensus 184 I~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM~ 263 (341)
|+|.|||..+ ++.-++..|+.||+|..+.|+.. +.+. ..|+ |||+|....+..+|++
T Consensus 1 l~v~nlp~~~----------t~~~l~~~f~~~g~i~~~~~~~~-~~~~---------~~~~---a~V~F~~~~~a~~a~~ 57 (70)
T PF00076_consen 1 LYVGNLPPDV----------TEEELRDFFSQFGKIESIKVMRN-SSGK---------SKGY---AFVEFESEEDAEKALE 57 (70)
T ss_dssp EEEESETTTS----------SHHHHHHHHHTTSTEEEEEEEEE-TTSS---------EEEE---EEEEESSHHHHHHHHH
T ss_pred cEEcCCCCcC----------CHHHHHHHHHHhhhccccccccc-cccc---------ccce---EEEEEcCHHHHHHHHH
Confidence 7999999999 89999999999999999999887 3322 2366 9999999999999999
Q ss_pred HhcCccceecCcee
Q 019393 264 VLCGRSMQKQGSQL 277 (341)
Q Consensus 264 aLrGmKL~~kGk~l 277 (341)
.|.|.++ .|+.+
T Consensus 58 ~l~g~~~--~~~~i 69 (70)
T PF00076_consen 58 ELNGKKI--NGRKI 69 (70)
T ss_dssp HHTTEEE--TTEEE
T ss_pred HcCCCEE--CccCc
Confidence 9999887 66544
No 4
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=98.61 E-value=2.3e-07 Score=80.83 Aligned_cols=80 Identities=16% Similarity=0.325 Sum_probs=67.3
Q ss_pred CCCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchH
Q 019393 178 KQEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRD 257 (341)
Q Consensus 178 geRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~ 257 (341)
....-+|||.+||..- +|+.|+.+|++||+|.++.|+.+...++.. |+ |||+|.+..+
T Consensus 31 ~~~~~~lfVgnL~~~~----------te~~L~~~F~~~G~I~~v~i~~d~~tg~~k---------Gf---aFV~F~~~e~ 88 (144)
T PLN03134 31 RLMSTKLFIGGLSWGT----------DDASLRDAFAHFGDVVDAKVIVDRETGRSR---------GF---GFVNFNDEGA 88 (144)
T ss_pred cCCCCEEEEeCCCCCC----------CHHHHHHHHhcCCCeEEEEEEecCCCCCcc---------eE---EEEEECCHHH
Confidence 5667799999999664 899999999999999999999876554433 78 9999999999
Q ss_pred HHHHHHHhcCccceecCceeEEEE
Q 019393 258 FYNTLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 258 F~kAM~aLrGmKL~~kGk~l~a~i 281 (341)
..+|++.|.|..+ .|+.+++++
T Consensus 89 A~~Al~~lng~~i--~Gr~l~V~~ 110 (144)
T PLN03134 89 ATAAISEMDGKEL--NGRHIRVNP 110 (144)
T ss_pred HHHHHHHcCCCEE--CCEEEEEEe
Confidence 9999999999887 787555443
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=98.54 E-value=2.9e-07 Score=87.35 Aligned_cols=78 Identities=18% Similarity=0.377 Sum_probs=67.4
Q ss_pred CCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHH
Q 019393 180 EPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFY 259 (341)
Q Consensus 180 RPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~ 259 (341)
...||+|.+||..+ +|.-|+.+|++||+|..|.|..+...++.. |+ |||+|..-.+..
T Consensus 2 ~~~~l~V~nLp~~~----------~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~---------g~---afV~f~~~~~A~ 59 (352)
T TIGR01661 2 SKTNLIVNYLPQTM----------TQEEIRSLFTSIGEIESCKLVRDKVTGQSL---------GY---GFVNYVRPEDAE 59 (352)
T ss_pred CCcEEEEeCCCCCC----------CHHHHHHHHHccCCEEEEEEEEcCCCCccc---------eE---EEEEECcHHHHH
Confidence 35799999999999 999999999999999999998876555533 78 999999999999
Q ss_pred HHHHHhcCccceecCceeEEEE
Q 019393 260 NTLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 260 kAM~aLrGmKL~~kGk~l~a~i 281 (341)
+|++.|.|..| .|+.+.+.+
T Consensus 60 ~Ai~~l~g~~l--~g~~i~v~~ 79 (352)
T TIGR01661 60 KAVNSLNGLRL--QNKTIKVSY 79 (352)
T ss_pred HHHhhcccEEE--CCeeEEEEe
Confidence 99999999888 777665543
No 6
>smart00362 RRM_2 RNA recognition motif.
Probab=98.51 E-value=7.1e-07 Score=63.04 Aligned_cols=71 Identities=27% Similarity=0.504 Sum_probs=58.7
Q ss_pred eEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHH
Q 019393 183 TIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTL 262 (341)
Q Consensus 183 TI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM 262 (341)
||+|.|||..+ +..-++.+|+.||.|..+.+.... +. ..|. |||+|....+..+|+
T Consensus 1 ~v~i~~l~~~~----------~~~~l~~~~~~~g~v~~~~~~~~~--~~---------~~~~---~~v~f~~~~~a~~a~ 56 (72)
T smart00362 1 TLFVGNLPPDV----------TEEDLKELFSKFGPIESVKIPKDT--GK---------SKGF---AFVEFESEEDAEKAI 56 (72)
T ss_pred CEEEcCCCCcC----------CHHHHHHHHHhcCCEEEEEEecCC--CC---------CCce---EEEEeCCHHHHHHHH
Confidence 69999999988 778899999999999999887553 21 2255 999999999999999
Q ss_pred HHhcCccceecCceeEE
Q 019393 263 KVLCGRSMQKQGSQLKA 279 (341)
Q Consensus 263 ~aLrGmKL~~kGk~l~a 279 (341)
+.|.|..+ .|+.+.+
T Consensus 57 ~~~~~~~~--~~~~i~v 71 (72)
T smart00362 57 EALNGTKL--GGRPLRV 71 (72)
T ss_pred HHhCCcEE--CCEEEee
Confidence 99999776 6766543
No 7
>smart00360 RRM RNA recognition motif.
Probab=98.42 E-value=1.2e-06 Score=61.52 Aligned_cols=70 Identities=31% Similarity=0.552 Sum_probs=56.7
Q ss_pred EcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHHHHh
Q 019393 186 IKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTLKVL 265 (341)
Q Consensus 186 l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM~aL 265 (341)
|.|||..| +++.++.+|+.||.|.++.|+.....++ ..|. |||+|....+..+||+.|
T Consensus 1 i~~l~~~~----------~~~~l~~~f~~~g~v~~~~i~~~~~~~~---------~~~~---a~v~f~~~~~a~~a~~~~ 58 (71)
T smart00360 1 VGNLPPDV----------TEEELRELFSKFGKIESVRLVRDKDTGK---------SKGF---AFVEFESEEDAEKALEAL 58 (71)
T ss_pred CCCCCccc----------CHHHHHHHHHhhCCEeEEEEEeCCCCCC---------CCce---EEEEeCCHHHHHHHHHHc
Confidence 46777777 8899999999999999999987644222 2255 999999999999999999
Q ss_pred cCccceecCceeEE
Q 019393 266 CGRSMQKQGSQLKA 279 (341)
Q Consensus 266 rGmKL~~kGk~l~a 279 (341)
.|..+ .|+.+.+
T Consensus 59 ~~~~~--~~~~~~v 70 (71)
T smart00360 59 NGKEL--DGRPLKV 70 (71)
T ss_pred CCCee--CCcEEEe
Confidence 98887 6776654
No 8
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.42 E-value=1.8e-06 Score=61.32 Aligned_cols=73 Identities=27% Similarity=0.524 Sum_probs=61.5
Q ss_pred eEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHH
Q 019393 183 TIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTL 262 (341)
Q Consensus 183 TI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM 262 (341)
+|+|.|||..+ ++..+..+|+.||.|.++.++.+... . ..|. +||+|..+.+...|+
T Consensus 1 ~i~i~~l~~~~----------~~~~i~~~~~~~g~i~~~~~~~~~~~-~---------~~~~---~~v~f~s~~~a~~a~ 57 (74)
T cd00590 1 TLFVGNLPPDV----------TEEDLRELFSKFGKVESVRIVRDKDT-K---------SKGF---AFVEFEDEEDAEKAL 57 (74)
T ss_pred CEEEeCCCCcc----------CHHHHHHHHHhcCCEEEEEEeeCCCC-C---------cceE---EEEEECCHHHHHHHH
Confidence 58999999986 88999999999999999999865433 1 1255 999999999999999
Q ss_pred HHhcCccceecCceeEEE
Q 019393 263 KVLCGRSMQKQGSQLKAD 280 (341)
Q Consensus 263 ~aLrGmKL~~kGk~l~a~ 280 (341)
+.|+|..+ .|+.+.+.
T Consensus 58 ~~~~~~~~--~~~~~~v~ 73 (74)
T cd00590 58 EALNGKEL--GGRPLRVE 73 (74)
T ss_pred HHhCCCeE--CCeEEEEe
Confidence 99999986 77776654
No 9
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=98.39 E-value=1.1e-06 Score=86.88 Aligned_cols=78 Identities=19% Similarity=0.393 Sum_probs=66.0
Q ss_pred CCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHH
Q 019393 181 PDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYN 260 (341)
Q Consensus 181 PDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~k 260 (341)
+.||+|.|||..+ +|+.|+.+|++||.|..|.|+.+...++. .|+ |||+|....+..+
T Consensus 186 ~~~l~v~nl~~~~----------te~~l~~~f~~~G~i~~v~~~~d~~~g~~---------~g~---afV~f~~~e~A~~ 243 (457)
T TIGR01622 186 FLKLYVGNLHFNI----------TEQELRQIFEPFGDIEDVQLHRDPETGRS---------KGF---GFIQFHDAEEAKE 243 (457)
T ss_pred CCEEEEcCCCCCC----------CHHHHHHHHHhcCCeEEEEEEEcCCCCcc---------ceE---EEEEECCHHHHHH
Confidence 5899999999877 89999999999999999999876443332 366 9999999999999
Q ss_pred HHHHhcCccceecCceeEEEEE
Q 019393 261 TLKVLCGRSMQKQGSQLKADYE 282 (341)
Q Consensus 261 AM~aLrGmKL~~kGk~l~a~ik 282 (341)
||++|.|+.+ .|+.+.+.+-
T Consensus 244 A~~~l~g~~i--~g~~i~v~~a 263 (457)
T TIGR01622 244 ALEVMNGFEL--AGRPIKVGYA 263 (457)
T ss_pred HHHhcCCcEE--CCEEEEEEEc
Confidence 9999999877 7877665553
No 10
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=98.38 E-value=2.2e-06 Score=90.44 Aligned_cols=80 Identities=16% Similarity=0.223 Sum_probs=69.0
Q ss_pred CCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHH
Q 019393 180 EPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFY 259 (341)
Q Consensus 180 RPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~ 259 (341)
..-+|||.|||-.| +++.|+.+|+.||.|.++.|+.+...++. .|+ +||+|+.+.+..
T Consensus 203 ~~~rLfVgnLp~~v----------teedLk~lFs~FG~I~svrl~~D~~tgks---------KGf---GFVeFe~~e~A~ 260 (612)
T TIGR01645 203 KFNRIYVASVHPDL----------SETDIKSVFEAFGEIVKCQLARAPTGRGH---------KGY---GFIEYNNLQSQS 260 (612)
T ss_pred ccceEEeecCCCCC----------CHHHHHHHHhhcCCeeEEEEEecCCCCCc---------CCe---EEEEECCHHHHH
Confidence 34589999999998 99999999999999999999976555443 378 999999999999
Q ss_pred HHHHHhcCccceecCceeEEEEEE
Q 019393 260 NTLKVLCGRSMQKQGSQLKADYEV 283 (341)
Q Consensus 260 kAM~aLrGmKL~~kGk~l~a~ikV 283 (341)
+|+++|.|..| .|+.+.++.-+
T Consensus 261 kAI~amNg~el--gGr~LrV~kAi 282 (612)
T TIGR01645 261 EAIASMNLFDL--GGQYLRVGKCV 282 (612)
T ss_pred HHHHHhCCCee--CCeEEEEEecC
Confidence 99999999988 79887766555
No 11
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.30 E-value=2.6e-06 Score=85.17 Aligned_cols=80 Identities=16% Similarity=0.267 Sum_probs=66.4
Q ss_pred CCCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchH
Q 019393 178 KQEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRD 257 (341)
Q Consensus 178 geRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~ 257 (341)
...+.+|||.|||..+ +++.|+.+|+.||.|..+.|+.+...+. ..|+ |||+|....+
T Consensus 292 ~~~~~~l~v~nlp~~~----------~~~~l~~~f~~~G~i~~~~~~~~~~~g~---------~~g~---afv~f~~~~~ 349 (509)
T TIGR01642 292 LDSKDRIYIGNLPLYL----------GEDQIKELLESFGDLKAFNLIKDIATGL---------SKGY---AFCEYKDPSV 349 (509)
T ss_pred CCCCCEEEEeCCCCCC----------CHHHHHHHHHhcCCeeEEEEEecCCCCC---------cCeE---EEEEECCHHH
Confidence 3557899999999988 8899999999999999999986533332 2367 9999999999
Q ss_pred HHHHHHHhcCccceecCceeEEEE
Q 019393 258 FYNTLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 258 F~kAM~aLrGmKL~~kGk~l~a~i 281 (341)
..+|+++|.|+.+ .|+.+.+.+
T Consensus 350 a~~A~~~l~g~~~--~~~~l~v~~ 371 (509)
T TIGR01642 350 TDVAIAALNGKDT--GDNKLHVQR 371 (509)
T ss_pred HHHHHHHcCCCEE--CCeEEEEEE
Confidence 9999999999998 777655443
No 12
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=98.21 E-value=4.3e-06 Score=82.50 Aligned_cols=75 Identities=21% Similarity=0.333 Sum_probs=64.0
Q ss_pred CeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHH
Q 019393 182 DTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNT 261 (341)
Q Consensus 182 DTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kA 261 (341)
-||+|.+||..+ +|+.|+.+|+.||+|..|.|+.+-..++.. |+ |||+|..-.+..+|
T Consensus 108 ~~LfVgnLp~~~----------te~~L~~lF~~~G~V~~v~i~~d~~tg~sr---------Gy---aFVeF~~~e~A~~A 165 (346)
T TIGR01659 108 TNLIVNYLPQDM----------TDRELYALFRTIGPINTCRIMRDYKTGYSF---------GY---AFVDFGSEADSQRA 165 (346)
T ss_pred cEEEEeCCCCCC----------CHHHHHHHHHhcCCEEEEEEEecCCCCccC---------cE---EEEEEccHHHHHHH
Confidence 389999999998 899999999999999999998765444432 77 99999999999999
Q ss_pred HHHhcCccceecCceeEEE
Q 019393 262 LKVLCGRSMQKQGSQLKAD 280 (341)
Q Consensus 262 M~aLrGmKL~~kGk~l~a~ 280 (341)
|+.|.|..| .++.+++.
T Consensus 166 i~~LnG~~l--~gr~i~V~ 182 (346)
T TIGR01659 166 IKNLNGITV--RNKRLKVS 182 (346)
T ss_pred HHHcCCCcc--CCceeeee
Confidence 999999998 56655443
No 13
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=98.16 E-value=7.7e-06 Score=80.76 Aligned_cols=81 Identities=19% Similarity=0.314 Sum_probs=65.5
Q ss_pred CCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHH
Q 019393 181 PDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYN 260 (341)
Q Consensus 181 PDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~k 260 (341)
..+|+|.|||-.+ +|+.|+.+|++||+|..+.|+.+...++.. |+ |||+|..-.+..+
T Consensus 193 ~~~lfV~nLp~~v----------tee~L~~~F~~fG~V~~v~i~~d~~tg~~k---------G~---aFV~F~~~e~A~~ 250 (346)
T TIGR01659 193 DTNLYVTNLPRTI----------TDDQLDTIFGKYGQIVQKNILRDKLTGTPR---------GV---AFVRFNKREEAQE 250 (346)
T ss_pred cceeEEeCCCCcc----------cHHHHHHHHHhcCCEEEEEEeecCCCCccc---------eE---EEEEECCHHHHHH
Confidence 4589999999888 889999999999999999999865554433 66 9999999999999
Q ss_pred HHHHhcCccceecCceeEEEEEEeecc
Q 019393 261 TLKVLCGRSMQKQGSQLKADYEVTWDK 287 (341)
Q Consensus 261 AM~aLrGmKL~~kGk~l~a~ikV~fD~ 287 (341)
|+++|.|+.+ +|... .++|.|..
T Consensus 251 Ai~~lng~~~--~g~~~--~l~V~~a~ 273 (346)
T TIGR01659 251 AISALNNVIP--EGGSQ--PLTVRLAE 273 (346)
T ss_pred HHHHhCCCcc--CCCce--eEEEEECC
Confidence 9999999988 54332 33444444
No 14
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=98.12 E-value=6.6e-06 Score=86.97 Aligned_cols=75 Identities=20% Similarity=0.352 Sum_probs=66.3
Q ss_pred CeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHH
Q 019393 182 DTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNT 261 (341)
Q Consensus 182 DTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kA 261 (341)
=+|||.|||..+ +|+.|+.+|++||.|..|.|+.+...++.. |+ |||+|....+..+|
T Consensus 108 ~rLfVGnLp~~~----------tEe~Lr~lF~~fG~I~sV~I~~D~~Tgksk---------Gf---AFVeF~s~e~A~~A 165 (612)
T TIGR01645 108 CRVYVGSISFEL----------REDTIRRAFDPFGPIKSINMSWDPATGKHK---------GF---AFVEYEVPEAAQLA 165 (612)
T ss_pred CEEEEcCCCCCC----------CHHHHHHHHHccCCEEEEEEeecCCCCCcC---------Ce---EEEEeCcHHHHHHH
Confidence 389999999998 899999999999999999999875555533 78 99999999999999
Q ss_pred HHHhcCccceecCceeEEE
Q 019393 262 LKVLCGRSMQKQGSQLKAD 280 (341)
Q Consensus 262 M~aLrGmKL~~kGk~l~a~ 280 (341)
|+.|.|..+ .|+.+.++
T Consensus 166 i~~lnG~~i--~GR~IkV~ 182 (612)
T TIGR01645 166 LEQMNGQML--GGRNIKVG 182 (612)
T ss_pred HHhcCCeEE--ecceeeec
Confidence 999999888 78876665
No 15
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.12 E-value=9.9e-06 Score=58.51 Aligned_cols=55 Identities=27% Similarity=0.608 Sum_probs=46.1
Q ss_pred HHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHHHHhcCccceecCceeEEEE
Q 019393 208 THTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 208 l~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM~aLrGmKL~~kGk~l~a~i 281 (341)
|+.+|++||+|.+|.+.... . |. |||||..-.+..+|++.|.|..+ .|+.+.+.+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~---~-----------~~---a~V~f~~~~~A~~a~~~l~~~~~--~g~~l~V~~ 55 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK---R-----------GF---AFVEFASVEDAQKAIEQLNGRQF--NGRPLKVSY 55 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS---T-----------TE---EEEEESSHHHHHHHHHHHTTSEE--TTEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC---C-----------CE---EEEEECCHHHHHHHHHHhCCCEE--CCcEEEEEE
Confidence 57899999999999996654 1 34 99999999999999999999998 888776654
No 16
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=98.11 E-value=1e-05 Score=59.96 Aligned_cols=69 Identities=25% Similarity=0.501 Sum_probs=55.9
Q ss_pred EEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHHH
Q 019393 184 IVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTLK 263 (341)
Q Consensus 184 I~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM~ 263 (341)
|||+|||... +++.+...|+.||.|..|.++...- +. ..|. |||+|....+..+|++
T Consensus 1 v~i~nlp~~~----------~~~~l~~~f~~~g~v~~v~~~~~~~-~~---------~~~~---a~v~f~~~~~a~~al~ 57 (70)
T PF14259_consen 1 VYISNLPPST----------TEEDLRNFFSRFGPVEKVRLIKNKD-GQ---------SRGF---AFVEFSSEEDAKRALE 57 (70)
T ss_dssp EEEESSTTT------------HHHHHHHCTTSSBEEEEEEEESTT-SS---------EEEE---EEEEESSHHHHHHHHH
T ss_pred CEEeCCCCCC----------CHHHHHHHHHhcCCcceEEEEeeec-cc---------cCCE---EEEEeCCHHHHHHHHH
Confidence 7999999976 7888999999999999999986422 21 1244 9999999999999999
Q ss_pred HhcCccceecCcee
Q 019393 264 VLCGRSMQKQGSQL 277 (341)
Q Consensus 264 aLrGmKL~~kGk~l 277 (341)
.+.|+.+ +|+.+
T Consensus 58 ~~~~~~~--~g~~l 69 (70)
T PF14259_consen 58 LLNGKEI--DGRKL 69 (70)
T ss_dssp HHTTEEE--TTEEE
T ss_pred HCCCcEE--CCEEc
Confidence 9988877 77765
No 17
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=98.11 E-value=3.1e-05 Score=79.20 Aligned_cols=128 Identities=19% Similarity=0.195 Sum_probs=85.2
Q ss_pred HHHHhhccCeeEEecCccceeEEEcccCCCchhhhhcHHHHhhccCCCCCCCCCCCCeEEEcCCccccccCCCCCCCCcH
Q 019393 126 KYIVEKMDGIELNLEGVKYKLSVVIPIADDFEKMRKDWEEFYAFGNRGYSRGKQEPDTIVIKGVPSRWFAEPRVSSKPSM 205 (341)
Q Consensus 126 ~~l~~kLdG~~lkLsGf~~~LkV~a~es~dFp~~rhdWesff~d~~~~~~~~geRPDTI~l~gLP~rWFa~~~~s~kPSE 205 (341)
...++.|||+.|....-...+.|.-+....-. ...=..-+.....+... ....-+|||.|||-.+ ++
T Consensus 233 ~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er--~~~~~~~~~~~~~~~~~-~~~~~~l~V~nl~~~~----------~~ 299 (562)
T TIGR01628 233 AKAVEEMNGKKIGLAKEGKKLYVGRAQKRAER--EAELRRKFEELQQERKM-KAQGVNLYVKNLDDTV----------TD 299 (562)
T ss_pred HHHHHHhCCcEecccccceeeEeecccChhhh--HHHHHhhHHhhhhhhhc-ccCCCEEEEeCCCCcc----------CH
Confidence 35678899999886644455666533321100 00000111111100000 1223479999999887 78
Q ss_pred HHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHHHHhcCccceecCceeEEEE
Q 019393 206 LVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 206 ~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM~aLrGmKL~~kGk~l~a~i 281 (341)
+.|+.+|++||.|..+.|..+ ..+. ..|. +||.|....+..+|+.+|+|..+ .|+.+.+.+
T Consensus 300 ~~L~~~F~~~G~i~~~~i~~d-~~g~---------~~g~---gfV~f~~~~~A~~A~~~~~g~~~--~gk~l~V~~ 360 (562)
T TIGR01628 300 EKLRELFSECGEITSAKVMLD-EKGV---------SRGF---GFVCFSNPEEANRAVTEMHGRML--GGKPLYVAL 360 (562)
T ss_pred HHHHHHHHhcCCeEEEEEEEC-CCCC---------cCCe---EEEEeCCHHHHHHHHHHhcCCee--CCceeEEEe
Confidence 999999999999999999887 3333 2366 99999999999999999999777 888776665
No 18
>PLN03120 nucleic acid binding protein; Provisional
Probab=98.11 E-value=1e-05 Score=77.68 Aligned_cols=76 Identities=16% Similarity=0.251 Sum_probs=65.5
Q ss_pred eEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHH
Q 019393 183 TIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTL 262 (341)
Q Consensus 183 TI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM 262 (341)
|||+.|||... +|.-|+..|+.||+|.+|+||.+... .|+ |||.|++..+..+||
T Consensus 6 tVfVgNLs~~t----------TE~dLrefFS~~G~I~~V~I~~d~~~------------~Gf---AFVtF~d~eaAe~Al 60 (260)
T PLN03120 6 TVKVSNVSLKA----------TERDIKEFFSFSGDIEYVEMQSENER------------SQI---AYVTFKDPQGAETAL 60 (260)
T ss_pred EEEEeCCCCCC----------CHHHHHHHHHhcCCeEEEEEeecCCC------------CCE---EEEEeCcHHHHHHHH
Confidence 99999999987 89999999999999999999876421 266 999999999999999
Q ss_pred HHhcCccceecCceeEEEEEEeec
Q 019393 263 KVLCGRSMQKQGSQLKADYEVTWD 286 (341)
Q Consensus 263 ~aLrGmKL~~kGk~l~a~ikV~fD 286 (341)
.|.|..| .|+.+.++..-++|
T Consensus 61 -lLnG~~l--~gr~V~Vt~a~~~~ 81 (260)
T PLN03120 61 -LLSGATI--VDQSVTITPAEDYQ 81 (260)
T ss_pred -HhcCCee--CCceEEEEeccCCC
Confidence 4999988 89988777755554
No 19
>smart00361 RRM_1 RNA recognition motif.
Probab=98.04 E-value=1.4e-05 Score=60.81 Aligned_cols=60 Identities=27% Similarity=0.399 Sum_probs=49.2
Q ss_pred HHHHHHhh----ccCceeeee-ecCCCCC--CCCCCCCCCCcccceeEEEEEEeccchHHHHHHHHhcCccceecCceeE
Q 019393 206 LVTHTVFS----TFGKIRNLN-VAEDDDP--GKDADEDGGDIISGLHCKIVVQFEKYRDFYNTLKVLCGRSMQKQGSQLK 278 (341)
Q Consensus 206 ~vl~~vFe----~FGkIRnvD-IP~~Dpy--r~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM~aLrGmKL~~kGk~l~ 278 (341)
+-+...|+ +||+|..|. |+++.+. +.. .|+ +||+|.+..+..+||+.|.|+.+ +|+.+.
T Consensus 3 ~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~---------rG~---~fV~f~~~~dA~~A~~~l~g~~~--~gr~l~ 68 (70)
T smart00361 3 EDFEREFSEEEEYFGEVGKINKIYIDNVGYENHK---------RGN---VYITFERSEDAARAIVDLNGRYF--DGRTVK 68 (70)
T ss_pred hhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCC---------cEE---EEEEECCHHHHHHHHHHhCCCEE--CCEEEE
Confidence 45778888 999999996 7776544 332 266 99999999999999999999988 888876
Q ss_pred E
Q 019393 279 A 279 (341)
Q Consensus 279 a 279 (341)
|
T Consensus 69 ~ 69 (70)
T smart00361 69 A 69 (70)
T ss_pred e
Confidence 6
No 20
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=98.03 E-value=1.5e-05 Score=81.53 Aligned_cols=73 Identities=15% Similarity=0.269 Sum_probs=64.1
Q ss_pred eEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHH
Q 019393 183 TIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTL 262 (341)
Q Consensus 183 TI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM 262 (341)
+|||.+||..+ +|+-|+.+|++||.|.+|.|..+.-.++.. |+ |||.|....+..+|+
T Consensus 2 sl~VgnLp~~v----------te~~L~~~F~~~G~v~~v~v~~d~~t~~s~---------G~---afV~F~~~~~A~~Al 59 (562)
T TIGR01628 2 SLYVGDLDPDV----------TEAKLYDLFKPFGPVLSVRVCRDSVTRRSL---------GY---GYVNFQNPADAERAL 59 (562)
T ss_pred eEEEeCCCCCC----------CHHHHHHHHHhcCCEEEEEEEecCCCCCcc---------eE---EEEEECCHHHHHHHH
Confidence 79999999999 899999999999999999998886655543 67 999999999999999
Q ss_pred HHhcCccceecCceeEE
Q 019393 263 KVLCGRSMQKQGSQLKA 279 (341)
Q Consensus 263 ~aLrGmKL~~kGk~l~a 279 (341)
+.|.+..+ .|+.+.+
T Consensus 60 ~~ln~~~i--~gk~i~i 74 (562)
T TIGR01628 60 ETMNFKRL--GGKPIRI 74 (562)
T ss_pred HHhCCCEE--CCeeEEe
Confidence 99999877 6766544
No 21
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.03 E-value=4.7e-05 Score=76.18 Aligned_cols=87 Identities=11% Similarity=0.213 Sum_probs=62.7
Q ss_pred CCeEEEcCCccccccCCCCCCCC---cHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchH
Q 019393 181 PDTIVIKGVPSRWFAEPRVSSKP---SMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRD 257 (341)
Q Consensus 181 PDTI~l~gLP~rWFa~~~~s~kP---SE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~ 257 (341)
.-+|+|.+|+.-+ .-..+.. -.+.|+..|++||.|..|.||-..+-+.. ..+.|. |||+|++..+
T Consensus 409 s~v~~l~N~~~~~---~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~------~~~~G~---~fV~F~~~e~ 476 (509)
T TIGR01642 409 TKVVQLTNLVTGD---DLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNS------TPGVGK---VFLEYADVRS 476 (509)
T ss_pred ceEEEeccCCchh---HhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCc------CCCcce---EEEEECCHHH
Confidence 3478888887543 0000111 23458899999999999999864222111 123366 9999999999
Q ss_pred HHHHHHHhcCccceecCceeEEEE
Q 019393 258 FYNTLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 258 F~kAM~aLrGmKL~~kGk~l~a~i 281 (341)
..+||.+|.|+++ .|+.+.|.|
T Consensus 477 A~~A~~~lnGr~~--~gr~v~~~~ 498 (509)
T TIGR01642 477 AEKAMEGMNGRKF--NDRVVVAAF 498 (509)
T ss_pred HHHHHHHcCCCEE--CCeEEEEEE
Confidence 9999999999999 899998887
No 22
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.00 E-value=1.6e-05 Score=82.92 Aligned_cols=126 Identities=22% Similarity=0.335 Sum_probs=83.9
Q ss_pred hhccCeeEEecCccceeEEE-cccCCCchhhhhcHHHHhhccC-C-CCCCCCCCCCeEEEcCCccccccCCCCCCCCcHH
Q 019393 130 EKMDGIELNLEGVKYKLSVV-IPIADDFEKMRKDWEEFYAFGN-R-GYSRGKQEPDTIVIKGVPSRWFAEPRVSSKPSML 206 (341)
Q Consensus 130 ~kLdG~~lkLsGf~~~LkV~-a~es~dFp~~rhdWesff~d~~-~-~~~~~geRPDTI~l~gLP~rWFa~~~~s~kPSE~ 206 (341)
.+++|..|++.=.+.+.+-. +... .+..=+--+...+ . .-.. +++| -++|++||.+- +..
T Consensus 70 ~kf~Gr~l~v~~A~~R~r~e~~~~~-----e~~~veK~~~q~~~~k~~v~-~~k~-rLIIRNLPf~~----------k~~ 132 (678)
T KOG0127|consen 70 SKFEGRILNVDPAKKRARSEEVEKG-----ENKAVEKPIEQKRPTKAKVD-LPKW-RLIIRNLPFKC----------KKP 132 (678)
T ss_pred Ccccceecccccccccccchhcccc-----cchhhhcccccCCcchhhcc-Cccc-eEEeecCCccc----------CcH
Confidence 46999999987666655543 1111 1011111111100 0 0000 3344 57899999654 233
Q ss_pred HHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHHHHhcCccceecCceeEEEEEEeec
Q 019393 207 VTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTLKVLCGRSMQKQGSQLKADYEVTWD 286 (341)
Q Consensus 207 vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM~aLrGmKL~~kGk~l~a~ikV~fD 286 (341)
-|..||+.||+|..|.||-- +=++. -|+ |||||.+-.+..+||+.++|.+. +|+.++|+.-|+=|
T Consensus 133 dLk~vFs~~G~V~Ei~IP~k-~dgkl---------cGF---aFV~fk~~~dA~~Al~~~N~~~i--~gR~VAVDWAV~Kd 197 (678)
T KOG0127|consen 133 DLKNVFSNFGKVVEIVIPRK-KDGKL---------CGF---AFVQFKEKKDAEKALEFFNGNKI--DGRPVAVDWAVDKD 197 (678)
T ss_pred HHHHHHhhcceEEEEEcccC-CCCCc---------cce---EEEEEeeHHHHHHHHHhccCcee--cCceeEEeeecccc
Confidence 79999999999999999932 22221 278 99999999999999999999999 99999999888654
Q ss_pred c
Q 019393 287 K 287 (341)
Q Consensus 287 ~ 287 (341)
+
T Consensus 198 ~ 198 (678)
T KOG0127|consen 198 T 198 (678)
T ss_pred c
Confidence 4
No 23
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=97.99 E-value=1.2e-05 Score=75.70 Aligned_cols=73 Identities=21% Similarity=0.408 Sum_probs=63.4
Q ss_pred eEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHH
Q 019393 183 TIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTL 262 (341)
Q Consensus 183 TI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM 262 (341)
++.|.||-.+- +.+.|+.||++||.|-.|-||-+...++.. |+ |||-|-+-.+...||
T Consensus 15 SLkVdNLTyRT----------spd~LrrvFekYG~vgDVyIPrdr~Tr~sR---------gF---aFVrf~~k~daedA~ 72 (256)
T KOG4207|consen 15 SLKVDNLTYRT----------SPDDLRRVFEKYGRVGDVYIPRDRYTRQSR---------GF---AFVRFHDKRDAEDAL 72 (256)
T ss_pred eEEecceeccC----------CHHHHHHHHHHhCcccceeccccccccccc---------ce---eEEEeeecchHHHHH
Confidence 67777887776 778899999999999999999986666644 88 999999999999999
Q ss_pred HHhcCccceecCceeEE
Q 019393 263 KVLCGRSMQKQGSQLKA 279 (341)
Q Consensus 263 ~aLrGmKL~~kGk~l~a 279 (341)
+||-|.-| +|+.|.+
T Consensus 73 damDG~~l--dgRelrV 87 (256)
T KOG4207|consen 73 DAMDGAVL--DGRELRV 87 (256)
T ss_pred Hhhcceee--ccceeee
Confidence 99999988 8887753
No 24
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=97.99 E-value=2.2e-05 Score=77.58 Aligned_cols=73 Identities=19% Similarity=0.340 Sum_probs=61.5
Q ss_pred CeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHH
Q 019393 182 DTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNT 261 (341)
Q Consensus 182 DTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kA 261 (341)
-||||.|||..+ ++.-|+.+|++||+|..|.|+.+...++. .|+ |||+|..-.+..+|
T Consensus 90 ~~l~V~nlp~~~----------~~~~l~~~F~~~G~v~~v~i~~d~~~~~s---------kg~---afVeF~~~e~A~~A 147 (457)
T TIGR01622 90 RTVFVLQLALKA----------RERDLYEFFSKVGKVRDVQCIKDRNSRRS---------KGV---AYVEFYDVESVIKA 147 (457)
T ss_pred cEEEEeCCCCCC----------CHHHHHHHHHhcCCeeEEEEeecCCCCCc---------ceE---EEEEECCHHHHHHH
Confidence 489999999998 88889999999999999999876444443 377 99999999999999
Q ss_pred HHHhcCccceecCceeEE
Q 019393 262 LKVLCGRSMQKQGSQLKA 279 (341)
Q Consensus 262 M~aLrGmKL~~kGk~l~a 279 (341)
|. |.|++| .|+.+.+
T Consensus 148 l~-l~g~~~--~g~~i~v 162 (457)
T TIGR01622 148 LA-LTGQML--LGRPIIV 162 (457)
T ss_pred HH-hCCCEE--CCeeeEE
Confidence 96 888888 5665544
No 25
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=97.98 E-value=1.4e-05 Score=83.99 Aligned_cols=77 Identities=18% Similarity=0.237 Sum_probs=65.2
Q ss_pred CCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHH
Q 019393 179 QEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDF 258 (341)
Q Consensus 179 eRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F 258 (341)
+..-+|+|.+||..| +|+.|+.+|++||+|..+.|+++ ..++.. |+ |||+|....+.
T Consensus 56 ~~~~~lFVgnLp~~~----------tEd~L~~~F~~~G~I~~vrl~~D-~sG~sR---------Gf---aFV~F~~~e~A 112 (578)
T TIGR01648 56 GRGCEVFVGKIPRDL----------YEDELVPLFEKAGPIYELRLMMD-FSGQNR---------GY---AFVTFCGKEEA 112 (578)
T ss_pred CCCCEEEeCCCCCCC----------CHHHHHHHHHhhCCEEEEEEEEC-CCCCcc---------ce---EEEEeCCHHHH
Confidence 445699999999999 89999999999999999999998 555543 78 99999999999
Q ss_pred HHHHHHhcCccceecCceeEE
Q 019393 259 YNTLKVLCGRSMQKQGSQLKA 279 (341)
Q Consensus 259 ~kAM~aLrGmKL~~kGk~l~a 279 (341)
.+||+.|.|..+. .|+.+.+
T Consensus 113 ~~Ai~~lng~~i~-~Gr~l~V 132 (578)
T TIGR01648 113 KEAVKLLNNYEIR-PGRLLGV 132 (578)
T ss_pred HHHHHHcCCCeec-CCccccc
Confidence 9999999998872 3554443
No 26
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=97.92 E-value=3.5e-05 Score=78.30 Aligned_cols=70 Identities=11% Similarity=0.245 Sum_probs=61.1
Q ss_pred eEEEcCCcc-ccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHH
Q 019393 183 TIVIKGVPS-RWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNT 261 (341)
Q Consensus 183 TI~l~gLP~-rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kA 261 (341)
||||.|||. .+ +++.|+.+|+.||.|..|.|+... .|+ |||||.+-.+..+|
T Consensus 277 ~l~v~nL~~~~v----------t~~~L~~lF~~yG~V~~vki~~~~--------------~g~---afV~f~~~~~A~~A 329 (481)
T TIGR01649 277 VLMVSGLHQEKV----------NCDRLFNLFCVYGNVERVKFMKNK--------------KET---ALIEMADPYQAQLA 329 (481)
T ss_pred EEEEeCCCCCCC----------CHHHHHHHHHhcCCeEEEEEEeCC--------------CCE---EEEEECCHHHHHHH
Confidence 899999995 46 889999999999999999998751 156 99999999999999
Q ss_pred HHHhcCccceecCceeEEEE
Q 019393 262 LKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 262 M~aLrGmKL~~kGk~l~a~i 281 (341)
|+.|.|..| .|+.+.+.+
T Consensus 330 i~~lng~~l--~g~~l~v~~ 347 (481)
T TIGR01649 330 LTHLNGVKL--FGKPLRVCP 347 (481)
T ss_pred HHHhCCCEE--CCceEEEEE
Confidence 999999988 787776654
No 27
>PLN03213 repressor of silencing 3; Provisional
Probab=97.92 E-value=3.8e-05 Score=79.64 Aligned_cols=76 Identities=11% Similarity=0.166 Sum_probs=65.4
Q ss_pred CCCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccc--
Q 019393 178 KQEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKY-- 255 (341)
Q Consensus 178 geRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey-- 255 (341)
|.+--+|||.||+..= .++-|..+|+.||.|.+|.|| |+. +.|+ |||.|..-
T Consensus 7 ~~~gMRIYVGNLSydV----------TEDDLravFSeFGsVkdVEIp-----RET--------GRGF---AFVEMssddd 60 (759)
T PLN03213 7 GGGGVRLHVGGLGESV----------GRDDLLKIFSPMGTVDAVEFV-----RTK--------GRSF---AYIDFSPSST 60 (759)
T ss_pred CCcceEEEEeCCCCCC----------CHHHHHHHHHhcCCeeEEEEe-----ccc--------CCce---EEEEecCCcH
Confidence 5556789999999876 889999999999999999999 221 1588 99999986
Q ss_pred hHHHHHHHHhcCccceecCceeEEEE
Q 019393 256 RDFYNTLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 256 ~~F~kAM~aLrGmKL~~kGk~l~a~i 281 (341)
....+||.+|.|.+| +|+.|+++-
T Consensus 61 aEeeKAISaLNGAEW--KGR~LKVNK 84 (759)
T PLN03213 61 NSLTKLFSTYNGCVW--KGGRLRLEK 84 (759)
T ss_pred HHHHHHHHHhcCCee--cCceeEEee
Confidence 689999999999999 898888765
No 28
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=1e-05 Score=76.91 Aligned_cols=77 Identities=21% Similarity=0.409 Sum_probs=67.0
Q ss_pred CCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHH
Q 019393 181 PDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYN 260 (341)
Q Consensus 181 PDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~k 260 (341)
--|||+.||--. -.|.||+.+|-+||-|..|-||++-...+.. |+ +||.|++-.+...
T Consensus 10 KrtlYVGGlade----------VtekvLhaAFIPFGDI~dIqiPlDyesqkHR---------gF---gFVefe~aEDAaa 67 (298)
T KOG0111|consen 10 KRTLYVGGLADE----------VTEKVLHAAFIPFGDIKDIQIPLDYESQKHR---------GF---GFVEFEEAEDAAA 67 (298)
T ss_pred ceeEEeccchHH----------HHHHHHHhccccccchhhcccccchhccccc---------ce---eEEEeeccchhHH
Confidence 349999998432 3899999999999999999999987666644 77 9999999999999
Q ss_pred HHHHhcCccceecCceeEEEE
Q 019393 261 TLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 261 AM~aLrGmKL~~kGk~l~a~i 281 (341)
||+.+.+-.| -|+.+.+|+
T Consensus 68 AiDNMnesEL--~GrtirVN~ 86 (298)
T KOG0111|consen 68 AIDNMNESEL--FGRTIRVNL 86 (298)
T ss_pred HhhcCchhhh--cceeEEEee
Confidence 9999999999 888888876
No 29
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=97.86 E-value=5.2e-05 Score=77.06 Aligned_cols=71 Identities=13% Similarity=0.183 Sum_probs=57.4
Q ss_pred eEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHH
Q 019393 183 TIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTL 262 (341)
Q Consensus 183 TI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM 262 (341)
||||.+||..+ +|+-|+.+|++||+|.+|.|+.. + |. |||||++-.+..+|+
T Consensus 4 vv~V~nLp~~~----------te~~L~~~f~~fG~V~~v~i~~~----k-----------~~---afVef~~~e~A~~Ai 55 (481)
T TIGR01649 4 VVHVRNLPQDV----------VEADLVEALIPFGPVSYVMMLPG----K-----------RQ---ALVEFEDEESAKACV 55 (481)
T ss_pred EEEEcCCCCCC----------CHHHHHHHHHhcCCeeEEEEECC----C-----------CE---EEEEeCchHHHHHHH
Confidence 89999999998 89999999999999999999741 1 44 999999999999999
Q ss_pred HHhcCccceecCceeEEEE
Q 019393 263 KVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 263 ~aLrGmKL~~kGk~l~a~i 281 (341)
+.|.+......|+.+.+++
T Consensus 56 ~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 56 NFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred HHhhcCCceEcCeEEEEEe
Confidence 9864433333776555443
No 30
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=97.80 E-value=0.00018 Score=75.88 Aligned_cols=75 Identities=19% Similarity=0.368 Sum_probs=62.4
Q ss_pred CCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhcc--CceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchH
Q 019393 180 EPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTF--GKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRD 257 (341)
Q Consensus 180 RPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~F--GkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~ 257 (341)
...||+|.|||..+ +|+.|+.+|++| |+|..|.++. |+ |||+|.+..+
T Consensus 232 ~~k~LfVgNL~~~~----------tee~L~~~F~~f~~G~I~rV~~~r-----------------gf---AFVeF~s~e~ 281 (578)
T TIGR01648 232 KVKILYVRNLMTTT----------TEEIIEKSFSEFKPGKVERVKKIR-----------------DY---AFVHFEDRED 281 (578)
T ss_pred cccEEEEeCCCCCC----------CHHHHHHHHHhcCCCceEEEEeec-----------------Ce---EEEEeCCHHH
Confidence 34689999999887 899999999999 9999997652 33 9999999999
Q ss_pred HHHHHHHhcCccceecCceeEEEEEEeec
Q 019393 258 FYNTLKVLCGRSMQKQGSQLKADYEVTWD 286 (341)
Q Consensus 258 F~kAM~aLrGmKL~~kGk~l~a~ikV~fD 286 (341)
..+||++|.|..| .|+.+.+++.---|
T Consensus 282 A~kAi~~lnG~~i--~Gr~I~V~~Akp~~ 308 (578)
T TIGR01648 282 AVKAMDELNGKEL--EGSEIEVTLAKPVD 308 (578)
T ss_pred HHHHHHHhCCCEE--CCEEEEEEEccCCC
Confidence 9999999999988 88665555443333
No 31
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.67 E-value=9e-06 Score=75.28 Aligned_cols=103 Identities=26% Similarity=0.420 Sum_probs=85.4
Q ss_pred HHHhhccCeeEEecCccceeEEEcccCCCchhhhhcHHHHhhccCCCCCCCCCCCCeEEEcCCccccccCCCCCCCCcHH
Q 019393 127 YIVEKMDGIELNLEGVKYKLSVVIPIADDFEKMRKDWEEFYAFGNRGYSRGKQEPDTIVIKGVPSRWFAEPRVSSKPSML 206 (341)
Q Consensus 127 ~l~~kLdG~~lkLsGf~~~LkV~a~es~dFp~~rhdWesff~d~~~~~~~~geRPDTI~l~gLP~rWFa~~~~s~kPSE~ 206 (341)
..+++||-+++.+.. . .+.+|-+-|.|.. -|||.|||..- +|.
T Consensus 8 k~i~~lne~Elq~g~-~---------------~~~SWH~~YkdsA-----------~Iyiggl~~~L----------tEg 50 (219)
T KOG0126|consen 8 KNIQKLNERELQLGI-A---------------DKKSWHQEYKDSA-----------YIYIGGLPYEL----------TEG 50 (219)
T ss_pred HHHHHhhHHhhcccc-c---------------cccchhhhcccce-----------EEEECCCcccc----------cCC
Confidence 346778877777642 1 3578988777643 79999999876 677
Q ss_pred HHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHHHHhcCccceecCceeEEE
Q 019393 207 VTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTLKVLCGRSMQKQGSQLKAD 280 (341)
Q Consensus 207 vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM~aLrGmKL~~kGk~l~a~ 280 (341)
-+..||+.||+|-||++.-+--.|+.. |+ ||+-|+.=.+=+-|.+.|.|-|+ .|+++.++
T Consensus 51 Dil~VFSqyGe~vdinLiRDk~TGKSK---------GF---aFLcYEDQRSTILAVDN~NGiki--~gRtirVD 110 (219)
T KOG0126|consen 51 DILCVFSQYGEIVDINLIRDKKTGKSK---------GF---AFLCYEDQRSTILAVDNLNGIKI--LGRTIRVD 110 (219)
T ss_pred cEEEEeeccCceEEEEEEecCCCCccc---------ce---EEEEecCccceEEEEeccCCcee--cceeEEee
Confidence 799999999999999999988888865 88 99999999999999999999999 88877654
No 32
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=97.58 E-value=0.00035 Score=59.89 Aligned_cols=80 Identities=20% Similarity=0.432 Sum_probs=67.8
Q ss_pred CCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHH
Q 019393 181 PDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYN 260 (341)
Q Consensus 181 PDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~k 260 (341)
.-||+|.+||..= +++-|..+|..||.|..|.|+.+...+.. .|+ |||.|....+..+
T Consensus 115 ~~~l~v~nL~~~~----------~~~~l~~~F~~~g~~~~~~~~~d~~~~~~---------~g~---~~v~f~~~~~~~~ 172 (306)
T COG0724 115 NNTLFVGNLPYDV----------TEEDLRELFKKFGPVKRVRLVRDRETGKS---------RGF---AFVEFESEESAEK 172 (306)
T ss_pred CceEEEeCCCCCC----------CHHHHHHHHHhcCceeEEEeeeccccCcc---------Cce---EEEEecCHHHHHH
Confidence 4899999999332 88999999999999999999998644443 377 9999999999999
Q ss_pred HHHHhcCccceecCceeEEEEEEe
Q 019393 261 TLKVLCGRSMQKQGSQLKADYEVT 284 (341)
Q Consensus 261 AM~aLrGmKL~~kGk~l~a~ikV~ 284 (341)
|++.+.|..| .|+.+.+.+...
T Consensus 173 a~~~~~~~~~--~~~~~~v~~~~~ 194 (306)
T COG0724 173 AIEELNGKEL--EGRPLRVQKAQP 194 (306)
T ss_pred HHHHcCCCeE--CCceeEeecccc
Confidence 9999998888 888887777553
No 33
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=97.51 E-value=0.00021 Score=71.02 Aligned_cols=76 Identities=20% Similarity=0.409 Sum_probs=62.9
Q ss_pred CCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHH
Q 019393 179 QEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDF 258 (341)
Q Consensus 179 eRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F 258 (341)
--|--|||.++|.|+ -+-.|++.|++||+|-.|.|.-.+ .|. -|+ +||.|+...|.
T Consensus 94 ~~pkRLhVSNIPFrF----------RdpDL~aMF~kfG~VldVEIIfNE-RGS----------KGF---GFVTmen~~da 149 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRF----------RDPDLRAMFEKFGKVLDVEIIFNE-RGS----------KGF---GFVTMENPADA 149 (376)
T ss_pred CCCceeEeecCCccc----------cCccHHHHHHhhCceeeEEEEecc-CCC----------Ccc---ceEEecChhhH
Confidence 446679999999998 233499999999999999998763 221 277 89999999999
Q ss_pred HHHHHHhcCccceecCceeEEE
Q 019393 259 YNTLKVLCGRSMQKQGSQLKAD 280 (341)
Q Consensus 259 ~kAM~aLrGmKL~~kGk~l~a~ 280 (341)
-+|=..|.|--. +|+.+.+|
T Consensus 150 dRARa~LHgt~V--EGRkIEVn 169 (376)
T KOG0125|consen 150 DRARAELHGTVV--EGRKIEVN 169 (376)
T ss_pred HHHHHHhhccee--eceEEEEe
Confidence 999999999888 88876654
No 34
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=97.43 E-value=0.00026 Score=72.59 Aligned_cols=82 Identities=17% Similarity=0.278 Sum_probs=68.8
Q ss_pred CCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHH
Q 019393 179 QEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDF 258 (341)
Q Consensus 179 eRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F 258 (341)
..--.+||+|||-.- +|+.|+..|+.||+|-.|-+|-| | |||-|.|-.+.
T Consensus 257 s~VKvLYVRNL~~~t----------TeE~lk~~F~~~G~veRVkk~rD--Y------------------aFVHf~eR~da 306 (506)
T KOG0117|consen 257 SKVKVLYVRNLMEST----------TEETLKKLFNEFGKVERVKKPRD--Y------------------AFVHFAEREDA 306 (506)
T ss_pred hheeeeeeeccchhh----------hHHHHHHHHHhccceEEeecccc--e------------------eEEeecchHHH
Confidence 445578999998876 99999999999999999999933 4 99999999999
Q ss_pred HHHHHHhcCccceecCceeEEEEEEeecccCCCc
Q 019393 259 YNTLKVLCGRSMQKQGSQLKADYEVTWDKDGFFW 292 (341)
Q Consensus 259 ~kAM~aLrGmKL~~kGk~l~a~ikV~fD~tkhlS 292 (341)
++||+.+.|..| +|..+.|..-=--|+.+|=+
T Consensus 307 vkAm~~~ngkel--dG~~iEvtLAKP~~k~k~~r 338 (506)
T KOG0117|consen 307 VKAMKETNGKEL--DGSPIEVTLAKPVDKKKKER 338 (506)
T ss_pred HHHHHHhcCcee--cCceEEEEecCChhhhccch
Confidence 999999999999 99877766655556655554
No 35
>PLN03121 nucleic acid binding protein; Provisional
Probab=97.42 E-value=0.00057 Score=65.34 Aligned_cols=67 Identities=13% Similarity=0.212 Sum_probs=57.1
Q ss_pred CeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHH
Q 019393 182 DTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNT 261 (341)
Q Consensus 182 DTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kA 261 (341)
=||++.||+.+- +|..|+..|+.||+|.+|.|+.++-+ .|+ |||.|++-.+.-.|
T Consensus 6 ~TV~V~NLS~~t----------TE~dLrefFS~~G~I~~V~I~~D~et------------~gf---AfVtF~d~~aaetA 60 (243)
T PLN03121 6 YTAEVTNLSPKA----------TEKDVYDFFSHCGAIEHVEIIRSGEY------------ACT---AYVTFKDAYALETA 60 (243)
T ss_pred eEEEEecCCCCC----------CHHHHHHHHHhcCCeEEEEEecCCCc------------ceE---EEEEECCHHHHHHH
Confidence 389999998776 99999999999999999999977322 144 99999999999999
Q ss_pred HHHhcCccceecCce
Q 019393 262 LKVLCGRSMQKQGSQ 276 (341)
Q Consensus 262 M~aLrGmKL~~kGk~ 276 (341)
| .|.|..| .|..
T Consensus 61 l-lLnGa~l--~d~~ 72 (243)
T PLN03121 61 V-LLSGATI--VDQR 72 (243)
T ss_pred H-hcCCCee--CCce
Confidence 9 7999999 5554
No 36
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=97.41 E-value=0.00045 Score=63.73 Aligned_cols=67 Identities=28% Similarity=0.515 Sum_probs=57.2
Q ss_pred eEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHH
Q 019393 183 TIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTL 262 (341)
Q Consensus 183 TI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM 262 (341)
.|||.+||.+- .+.-|..+|.+||.|++|=|.-. |- |+ |||.|+.-.+...|.
T Consensus 12 kVYVGnL~~~a----------~k~eLE~~F~~yG~lrsvWvArn-PP-------------Gf---AFVEFed~RDA~DAv 64 (195)
T KOG0107|consen 12 KVYVGNLGSRA----------TKRELERAFSKYGPLRSVWVARN-PP-------------GF---AFVEFEDPRDAEDAV 64 (195)
T ss_pred eEEeccCCCCc----------chHHHHHHHHhcCcceeEEEeec-CC-------------Cc---eEEeccCcccHHHHH
Confidence 69999999886 66779999999999999998763 32 67 999999999999999
Q ss_pred HHhcCccceecCceeE
Q 019393 263 KVLCGRSMQKQGSQLK 278 (341)
Q Consensus 263 ~aLrGmKL~~kGk~l~ 278 (341)
.+|.|..+ -|..+.
T Consensus 65 r~LDG~~~--cG~r~r 78 (195)
T KOG0107|consen 65 RYLDGKDI--CGSRIR 78 (195)
T ss_pred hhcCCccc--cCceEE
Confidence 99999998 444433
No 37
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=97.26 E-value=0.00038 Score=62.27 Aligned_cols=71 Identities=20% Similarity=0.438 Sum_probs=59.3
Q ss_pred CCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHHHHhcCccceecCcee
Q 019393 198 RVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTLKVLCGRSMQKQGSQL 277 (341)
Q Consensus 198 ~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM~aLrGmKL~~kGk~l 277 (341)
++.+-..|+-++..|.-||+|+||.+-.+.-. ++.-|+ |-|.|+-+.....||++|+|..||-
T Consensus 79 gvHeEatEedi~d~F~dyGeiKNihLNLDRRt---------Gy~KGY---aLvEYet~keAq~A~~~~Ng~~ll~----- 141 (170)
T KOG0130|consen 79 GVHEEATEEDIHDKFADYGEIKNIHLNLDRRT---------GYVKGY---ALVEYETLKEAQAAIDALNGAELLG----- 141 (170)
T ss_pred ccCcchhHHHHHHHHhhcccccceeecccccc---------ccccce---eeeehHhHHHHHHHHHhccchhhhC-----
Confidence 34566799999999999999999998766433 234488 9999999999999999999999964
Q ss_pred EEEEEEeec
Q 019393 278 KADYEVTWD 286 (341)
Q Consensus 278 ~a~ikV~fD 286 (341)
-||+|||-
T Consensus 142 -q~v~VDw~ 149 (170)
T KOG0130|consen 142 -QNVSVDWC 149 (170)
T ss_pred -CceeEEEE
Confidence 57888885
No 38
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.24 E-value=0.00059 Score=71.15 Aligned_cols=72 Identities=22% Similarity=0.428 Sum_probs=62.2
Q ss_pred EEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHHH
Q 019393 184 IVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTLK 263 (341)
Q Consensus 184 I~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM~ 263 (341)
+|+.+|=. .++|+.++.|||+||+|-+|++++++..|... |+ +||||..-.+.-+|+.
T Consensus 281 l~vgnLHf----------Nite~~lr~ifepfg~Ie~v~l~~d~~tG~sk---------gf---Gfi~f~~~~~ar~a~e 338 (549)
T KOG0147|consen 281 LYVGNLHF----------NITEDMLRGIFEPFGKIENVQLTKDSETGRSK---------GF---GFITFVNKEDARKALE 338 (549)
T ss_pred hhhccccc----------CchHHHHhhhccCcccceeeeecccccccccc---------Cc---ceEEEecHHHHHHHHH
Confidence 77777754 45999999999999999999999998887744 78 9999999999999999
Q ss_pred HhcCccceecCceeEE
Q 019393 264 VLCGRSMQKQGSQLKA 279 (341)
Q Consensus 264 aLrGmKL~~kGk~l~a 279 (341)
.|.| |...|+.+++
T Consensus 339 ~lng--felAGr~ikV 352 (549)
T KOG0147|consen 339 QLNG--FELAGRLIKV 352 (549)
T ss_pred Hhcc--ceecCceEEE
Confidence 9999 6668987763
No 39
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=97.24 E-value=0.0018 Score=63.91 Aligned_cols=82 Identities=21% Similarity=0.325 Sum_probs=73.4
Q ss_pred CCCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchH
Q 019393 178 KQEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRD 257 (341)
Q Consensus 178 geRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~ 257 (341)
|--.=||.|.-|+..- +|.-|+.+|++||.|++|-|.-+--.++.+ |. |||.|+.-.+
T Consensus 98 gDPy~TLFv~RLnydT----------~EskLrreF~~YG~IkrirlV~d~vTgksk---------GY---AFIeye~erd 155 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDT----------SESKLRREFEKYGPIKRIRLVRDKVTGKSK---------GY---AFIEYEHERD 155 (335)
T ss_pred CCccceeeeeeccccc----------cHHHHHHHHHhcCcceeEEEeeecccCCcc---------ce---EEEEeccHHH
Confidence 5556799999998876 999999999999999999999887887766 88 9999999999
Q ss_pred HHHHHHHhcCccceecCceeEEEEEE
Q 019393 258 FYNTLKVLCGRSMQKQGSQLKADYEV 283 (341)
Q Consensus 258 F~kAM~aLrGmKL~~kGk~l~a~ikV 283 (341)
-..|-+..-|.++ +|+.+-|+|+-
T Consensus 156 m~~AYK~adG~~I--dgrri~VDvER 179 (335)
T KOG0113|consen 156 MKAAYKDADGIKI--DGRRILVDVER 179 (335)
T ss_pred HHHHHHhccCcee--cCcEEEEEecc
Confidence 9999999999999 99988888764
No 40
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.72 E-value=0.0016 Score=69.77 Aligned_cols=75 Identities=21% Similarity=0.417 Sum_probs=62.6
Q ss_pred CeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHH
Q 019393 182 DTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNT 261 (341)
Q Consensus 182 DTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kA 261 (341)
--|+|++||..- +..-++++|.+||+|++|.||-- .++.| ..|+ +||.|.-.....+|
T Consensus 614 tKIlVRNipFeA----------t~rEVr~LF~aFGqlksvRlPKK--~~k~a-------~rGF---~Fv~f~t~~ea~nA 671 (725)
T KOG0110|consen 614 TKILVRNIPFEA----------TKREVRKLFTAFGQLKSVRLPKK--IGKGA-------HRGF---GFVDFLTPREAKNA 671 (725)
T ss_pred ceeeeeccchHH----------HHHHHHHHHhcccceeeeccchh--hcchh-------hccc---eeeeccCcHHHHHH
Confidence 579999999876 77889999999999999999998 55544 3477 99999999999999
Q ss_pred HHHhcCccceecCceeEEE
Q 019393 262 LKVLCGRSMQKQGSQLKAD 280 (341)
Q Consensus 262 M~aLrGmKL~~kGk~l~a~ 280 (341)
|++|++--| =|+.|--.
T Consensus 672 ~~al~STHl--yGRrLVLE 688 (725)
T KOG0110|consen 672 FDALGSTHL--YGRRLVLE 688 (725)
T ss_pred HHhhcccce--echhhhee
Confidence 999995544 67766543
No 41
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.66 E-value=0.0098 Score=51.34 Aligned_cols=84 Identities=18% Similarity=0.263 Sum_probs=66.3
Q ss_pred CCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHH
Q 019393 179 QEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDF 258 (341)
Q Consensus 179 eRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F 258 (341)
|---.+||++||.+- +-+-+-.+|.+||.||.|-|-..... .|- |||-|+.--|.
T Consensus 16 evnriLyirNLp~~I----------TseemydlFGkyg~IrQIRiG~~k~T------------rGT---AFVVYedi~dA 70 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKI----------TSEEMYDLFGKYGTIRQIRIGNTKET------------RGT---AFVVYEDIFDA 70 (124)
T ss_pred hhheeEEEecCCccc----------cHHHHHHHhhcccceEEEEecCccCc------------Cce---EEEEehHhhhH
Confidence 444579999999887 44446789999999999999654222 244 99999999999
Q ss_pred HHHHHHhcCccceecCceeEEEEEEeecccC
Q 019393 259 YNTLKVLCGRSMQKQGSQLKADYEVTWDKDG 289 (341)
Q Consensus 259 ~kAM~aLrGmKL~~kGk~l~a~ikV~fD~tk 289 (341)
-+||+-|.|--+ .++-|-+-|=--+|.-+
T Consensus 71 k~A~dhlsg~n~--~~ryl~vlyyq~~~~~~ 99 (124)
T KOG0114|consen 71 KKACDHLSGYNV--DNRYLVVLYYQPEDAFK 99 (124)
T ss_pred HHHHHHhccccc--CCceEEEEecCHHHHHH
Confidence 999999999988 78888877765555533
No 42
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=96.66 E-value=0.0052 Score=63.12 Aligned_cols=82 Identities=18% Similarity=0.360 Sum_probs=74.3
Q ss_pred CeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHH
Q 019393 182 DTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNT 261 (341)
Q Consensus 182 DTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kA 261 (341)
=+|++.++|..| ||+.|..||+.-|.|-++.+.-|.+.++-. |+ +|++|.+-.+-.+|
T Consensus 19 ~~v~vgnip~~~----------se~~l~~~~~~~g~v~s~~~v~D~~tG~~~---------G~---~f~~~~~~~~~~~a 76 (435)
T KOG0108|consen 19 SSVFVGNIPYEG----------SEEQLLSIFSGVGPVLSFRLVYDRETGKPK---------GF---GFCEFTDEETAERA 76 (435)
T ss_pred cceEecCCCCcc----------cHHHHHHHHhccCccceeeecccccCCCcC---------ce---eeEecCchhhHHHH
Confidence 589999999999 999999999999999999998887777644 88 99999999999999
Q ss_pred HHHhcCccceecCceeEEEEEEeecc
Q 019393 262 LKVLCGRSMQKQGSQLKADYEVTWDK 287 (341)
Q Consensus 262 M~aLrGmKL~~kGk~l~a~ikV~fD~ 287 (341)
+..|.|.++ .|+.|.++|+..=+.
T Consensus 77 ~~~lNg~~~--~gr~l~v~~~~~~~~ 100 (435)
T KOG0108|consen 77 IRNLNGAEF--NGRKLRVNYASNRKN 100 (435)
T ss_pred HHhcCCccc--CCceEEeecccccch
Confidence 999999999 999999999875443
No 43
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=96.52 E-value=0.0056 Score=56.94 Aligned_cols=76 Identities=18% Similarity=0.263 Sum_probs=66.4
Q ss_pred CeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHH
Q 019393 182 DTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNT 261 (341)
Q Consensus 182 DTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kA 261 (341)
-|||+.||+.+- |+++|...|-.=|.|-||.||-+-...... |+ +||+|..-.+.-=|
T Consensus 10 ~tiyvgnld~kv----------s~~~l~EL~iqagpVv~i~iPkDrv~~~~q---------Gy---gF~Ef~~eedadYA 67 (203)
T KOG0131|consen 10 ATLYVGNLDEKV----------SEELLYELFIQAGPVVNLHIPKDRVTQKHQ---------GY---GFAEFRTEEDADYA 67 (203)
T ss_pred ceEEEecCCHHH----------HHHHHHHHHHhcCceeeeecchhhhccccc---------ce---eEEEEechhhhHHH
Confidence 499999999877 999999999999999999999886554332 78 99999999999999
Q ss_pred HHHhcCccceecCceeEEEE
Q 019393 262 LKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 262 M~aLrGmKL~~kGk~l~a~i 281 (341)
++.|++-|| =|+.++++.
T Consensus 68 ikiln~VkL--YgrpIrv~k 85 (203)
T KOG0131|consen 68 IKILNMVKL--YGRPIRVNK 85 (203)
T ss_pred HHHHHHHHh--cCceeEEEe
Confidence 999998888 788877764
No 44
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=96.45 E-value=0.012 Score=57.52 Aligned_cols=68 Identities=19% Similarity=0.340 Sum_probs=55.7
Q ss_pred CCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHHHHhcCccceecCceeEEE
Q 019393 201 SKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTLKVLCGRSMQKQGSQLKAD 280 (341)
Q Consensus 201 ~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM~aLrGmKL~~kGk~l~a~ 280 (341)
.-.-|.+|.+.|.+||.|-||.|.-|--.-+- -|+ +||.+-+|+..+.||.+|.|..| .++.|.+.
T Consensus 288 pd~de~~LWQlFgpFGAv~nVKvirD~ttnkC---------KGf---gFVtMtNYdEAamAi~sLNGy~l--g~rvLQVs 353 (360)
T KOG0145|consen 288 PDADESILWQLFGPFGAVTNVKVIRDFTTNKC---------KGF---GFVTMTNYDEAAMAIASLNGYRL--GDRVLQVS 353 (360)
T ss_pred CCchHhHHHHHhCcccceeeEEEEecCCcccc---------cce---eEEEecchHHHHHHHHHhcCccc--cceEEEEE
Confidence 45579999999999999999999765222221 267 89999999999999999999999 78887765
Q ss_pred EE
Q 019393 281 YE 282 (341)
Q Consensus 281 ik 282 (341)
+|
T Consensus 354 FK 355 (360)
T KOG0145|consen 354 FK 355 (360)
T ss_pred Ee
Confidence 54
No 45
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=96.35 E-value=0.012 Score=62.17 Aligned_cols=84 Identities=23% Similarity=0.347 Sum_probs=68.8
Q ss_pred CeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHH
Q 019393 182 DTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNT 261 (341)
Q Consensus 182 DTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kA 261 (341)
+||.|++||..- .|+-|..-|++||+|..+-|..+...+... |- |||+|.--....+|
T Consensus 293 ~tVFvRNL~fD~----------tEEel~~~fskFG~v~ya~iV~~k~T~~sk---------Gt---AFv~Fkt~~~~~~c 350 (678)
T KOG0127|consen 293 KTVFVRNLPFDT----------TEEELKEHFSKFGEVKYAIIVKDKDTGHSK---------GT---AFVKFKTQIAAQNC 350 (678)
T ss_pred ceEEEecCCccc----------cHHHHHHHHHhhccceeEEEEeccCCCCcc---------cc---eEEEeccHHHHHHH
Confidence 699999999876 889999999999999988777665554432 55 99999999999999
Q ss_pred HHHh---cCc-cceecCceeEEEEEEeecc
Q 019393 262 LKVL---CGR-SMQKQGSQLKADYEVTWDK 287 (341)
Q Consensus 262 M~aL---rGm-KL~~kGk~l~a~ikV~fD~ 287 (341)
+.+- .|- .+.++|+.|.++.-|+=+-
T Consensus 351 i~~Aspa~e~g~~ll~GR~Lkv~~Av~Rke 380 (678)
T KOG0127|consen 351 IEAASPASEDGSVLLDGRLLKVTLAVTRKE 380 (678)
T ss_pred HHhcCccCCCceEEEeccEEeeeeccchHH
Confidence 9998 222 2667999999998887554
No 46
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=95.91 E-value=0.016 Score=55.64 Aligned_cols=77 Identities=17% Similarity=0.208 Sum_probs=60.3
Q ss_pred CCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHH
Q 019393 180 EPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFY 259 (341)
Q Consensus 180 RPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~ 259 (341)
+--.|++.|||..- .-+-+++-||.||+|-...|..|...++.. |. +||.|.++.+..
T Consensus 11 ~~TKifVggL~w~T----------~~~~l~~yFeqfGeI~eavvitd~~t~rsk---------Gy---GfVTf~d~~aa~ 68 (247)
T KOG0149|consen 11 TFTKIFVGGLAWET----------HKETLRRYFEQFGEIVEAVVITDKNTGRSK---------GY---GFVTFRDAEAAT 68 (247)
T ss_pred eEEEEEEcCccccc----------chHHHHHHHHHhCceEEEEEEeccCCcccc---------ce---eeEEeecHHHHH
Confidence 34469999999665 456699999999999999999888887755 88 999999988766
Q ss_pred HHHHHhcCccceecCceeEEEE
Q 019393 260 NTLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 260 kAM~aLrGmKL~~kGk~l~a~i 281 (341)
+|+ ....=.-+|+.--||+
T Consensus 69 rAc---~dp~piIdGR~aNcnl 87 (247)
T KOG0149|consen 69 RAC---KDPNPIIDGRKANCNL 87 (247)
T ss_pred HHh---cCCCCcccccccccch
Confidence 655 4555555777766766
No 47
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=95.55 E-value=0.03 Score=54.19 Aligned_cols=67 Identities=22% Similarity=0.351 Sum_probs=58.1
Q ss_pred eEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHH
Q 019393 183 TIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTL 262 (341)
Q Consensus 183 TI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM 262 (341)
||-|.+||-.- .|.-|...|-+||.|-.|.|.++--.+... |+ |||.|..-.+.++|+
T Consensus 191 tvRvtNLsed~----------~E~dL~eLf~~fg~i~rvylardK~TG~~k---------GF---AFVtF~sRddA~rAI 248 (270)
T KOG0122|consen 191 TVRVTNLSEDM----------REDDLEELFRPFGPITRVYLARDKETGLSK---------GF---AFVTFESRDDAARAI 248 (270)
T ss_pred eeEEecCcccc----------ChhHHHHHhhccCccceeEEEEccccCccc---------ce---EEEEEecHHHHHHHH
Confidence 68888887654 677789999999999999999997776644 89 999999999999999
Q ss_pred HHhcCccce
Q 019393 263 KVLCGRSMQ 271 (341)
Q Consensus 263 ~aLrGmKL~ 271 (341)
+-|.|.-..
T Consensus 249 ~~LnG~gyd 257 (270)
T KOG0122|consen 249 ADLNGYGYD 257 (270)
T ss_pred HHccCcccc
Confidence 999998663
No 48
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=95.32 E-value=0.025 Score=57.59 Aligned_cols=63 Identities=24% Similarity=0.412 Sum_probs=53.8
Q ss_pred cHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHHHHhcCccceecCceeEEE
Q 019393 204 SMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTLKVLCGRSMQKQGSQLKAD 280 (341)
Q Consensus 204 SE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM~aLrGmKL~~kGk~l~a~ 280 (341)
-|+.++++|..||.|+.||..=+.-.++.. |+ |||.|+=..+..-|++.++|.-| .|+.++++
T Consensus 126 ~EDtiR~AF~PFGPIKSInMSWDp~T~kHK---------gF---AFVEYEvPEaAqLAlEqMNg~ml--GGRNiKVg 188 (544)
T KOG0124|consen 126 REDTIRRAFDPFGPIKSINMSWDPATGKHK---------GF---AFVEYEVPEAAQLALEQMNGQML--GGRNIKVG 188 (544)
T ss_pred chHHHHhhccCCCCcceeeccccccccccc---------ce---EEEEEeCcHHHHHHHHHhccccc--cCcccccc
Confidence 789999999999999999987776666644 77 99999999999999999999877 78755444
No 49
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=95.29 E-value=0.039 Score=51.92 Aligned_cols=79 Identities=22% Similarity=0.359 Sum_probs=59.4
Q ss_pred CCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHH
Q 019393 181 PDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYN 260 (341)
Q Consensus 181 PDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~k 260 (341)
--+||+.|||-.- -|.-+..+|-+||+|+.||+-.- + |+-+=|||.|+...+...
T Consensus 6 ~~~iyvGNLP~di----------RekeieDlFyKyg~i~~ieLK~r--~-------------g~ppfafVeFEd~RDAeD 60 (241)
T KOG0105|consen 6 SRRIYVGNLPGDI----------REKEIEDLFYKYGRIREIELKNR--P-------------GPPPFAFVEFEDPRDAED 60 (241)
T ss_pred cceEEecCCCcch----------hhccHHHHHhhhcceEEEEeccC--C-------------CCCCeeEEEecCccchhh
Confidence 3489999999765 33448899999999999998441 1 222229999999999998
Q ss_pred HHHHhcCccceecCceeEEEEEEeecccCC
Q 019393 261 TLKVLCGRSMQKQGSQLKADYEVTWDKDGF 290 (341)
Q Consensus 261 AM~aLrGmKL~~kGk~l~a~ikV~fD~tkh 290 (341)
|+..-.|.-+ +| |-..|.|-.++-
T Consensus 61 AiygRdGYdy--dg----~rLRVEfprggr 84 (241)
T KOG0105|consen 61 AIYGRDGYDY--DG----CRLRVEFPRGGR 84 (241)
T ss_pred hhhccccccc--Cc----ceEEEEeccCCC
Confidence 8887777666 55 667788877775
No 50
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=95.23 E-value=0.052 Score=56.83 Aligned_cols=63 Identities=22% Similarity=0.390 Sum_probs=51.5
Q ss_pred HHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHHHHhcCccceecCceeEEEE
Q 019393 208 THTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 208 l~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM~aLrGmKL~~kGk~l~a~i 281 (341)
++.=+.+||.|+.|-||-.++.+... ++.| ++||+|..-.+-.+||.+|.|+|. .|+.+.|.|
T Consensus 426 vr~ec~k~g~v~~v~ipr~~~~~~~~------~G~G---kVFVefas~ed~qrA~~~L~GrKF--~nRtVvtsY 488 (500)
T KOG0120|consen 426 VRTECAKFGAVRSVEIPRPYPDENPV------PGTG---KVFVEFADTEDSQRAMEELTGRKF--ANRTVVASY 488 (500)
T ss_pred HHHHhcccCceeEEecCCCCCCCCcC------CCcc---cEEEEecChHHHHHHHHHccCcee--CCcEEEEEe
Confidence 56668899999999999886443322 2223 399999999999999999999999 999888876
No 51
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=95.09 E-value=0.094 Score=54.41 Aligned_cols=80 Identities=21% Similarity=0.290 Sum_probs=68.5
Q ss_pred CeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHH
Q 019393 182 DTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNT 261 (341)
Q Consensus 182 DTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kA 261 (341)
--|+|.+||-.=| |+-|.-+||+-|+|=.|-+-|+.-.+.+. |. |||.|..=....+|
T Consensus 84 ~EVfvGkIPrD~~----------EdeLvplfEkiG~I~elRLMmD~~sG~nR---------GY---AFVtf~~Ke~Aq~A 141 (506)
T KOG0117|consen 84 CEVFVGKIPRDVF----------EDELVPLFEKIGKIYELRLMMDPFSGDNR---------GY---AFVTFCTKEEAQEA 141 (506)
T ss_pred ceEEecCCCcccc----------chhhHHHHHhccceeeEEEeecccCCCCc---------ce---EEEEeecHHHHHHH
Confidence 4699999998774 45599999999999999998885555544 88 99999999999999
Q ss_pred HHHhcCccceecCceeEEEEEEe
Q 019393 262 LKVLCGRSMQKQGSQLKADYEVT 284 (341)
Q Consensus 262 M~aLrGmKL~~kGk~l~a~ikV~ 284 (341)
++.|.+..+ +-||.+.|.+.|+
T Consensus 142 ik~lnn~Ei-r~GK~igvc~Sva 163 (506)
T KOG0117|consen 142 IKELNNYEI-RPGKLLGVCVSVA 163 (506)
T ss_pred HHHhhCccc-cCCCEeEEEEeee
Confidence 999999987 4599999988775
No 52
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=95.00 E-value=0.08 Score=47.28 Aligned_cols=81 Identities=19% Similarity=0.321 Sum_probs=65.2
Q ss_pred CCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHH
Q 019393 179 QEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDF 258 (341)
Q Consensus 179 eRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F 258 (341)
..--|||+.||..-- +|+.+..+|++=|.||.| |-.+|-+-+-. -|+ .||.|-.-.+.
T Consensus 34 r~S~tvyVgNlSfyt----------tEEqiyELFs~cG~irri-iMGLdr~kktp--------CGF---CFVeyy~~~dA 91 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYT----------TEEQIYELFSKCGDIRRI-IMGLDRFKKTP--------CGF---CFVEYYSRDDA 91 (153)
T ss_pred hhcceEEEeeeeeee----------cHHHHHHHHHhccchhee-EeccccCCcCc--------cce---EEEEEecchhH
Confidence 345699999998665 899999999999999987 33465554422 267 89999999999
Q ss_pred HHHHHHhcCccceecCceeEEEEEEeecc
Q 019393 259 YNTLKVLCGRSMQKQGSQLKADYEVTWDK 287 (341)
Q Consensus 259 ~kAM~aLrGmKL~~kGk~l~a~ikV~fD~ 287 (341)
..||.-+.|-+| +.+ -|.||||.
T Consensus 92 ~~AlryisgtrL--ddr----~ir~D~D~ 114 (153)
T KOG0121|consen 92 EDALRYISGTRL--DDR----PIRIDWDA 114 (153)
T ss_pred HHHHHHhccCcc--ccc----ceeeeccc
Confidence 999999999999 655 46678887
No 53
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=94.85 E-value=0.058 Score=55.79 Aligned_cols=66 Identities=15% Similarity=0.351 Sum_probs=58.7
Q ss_pred EEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHHH
Q 019393 184 IVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTLK 263 (341)
Q Consensus 184 I~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM~ 263 (341)
+++.-+|--| ||.-++++||+||-|-.|+|+-|.-.+... |- .||-|-.-.+..+|+.
T Consensus 37 lfVgqIprt~----------sE~dlr~lFe~yg~V~einl~kDk~t~~s~---------gc---CFv~~~trk~a~~a~~ 94 (510)
T KOG0144|consen 37 LFVGQIPRTA----------SEKDLRELFEKYGNVYEINLIKDKSTGQSK---------GC---CFVKYYTRKEADEAIN 94 (510)
T ss_pred heeccCCccc----------cHHHHHHHHHHhCceeEEEeecccccCccc---------ce---EEEEeccHHHHHHHHH
Confidence 5788899999 999999999999999999999987777544 66 8999999999999999
Q ss_pred HhcCccce
Q 019393 264 VLCGRSMQ 271 (341)
Q Consensus 264 aLrGmKL~ 271 (341)
||..+|-.
T Consensus 95 Alhn~ktl 102 (510)
T KOG0144|consen 95 ALHNQKTL 102 (510)
T ss_pred Hhhccccc
Confidence 99988864
No 54
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=94.56 E-value=0.093 Score=56.74 Aligned_cols=78 Identities=21% Similarity=0.328 Sum_probs=63.4
Q ss_pred eEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecC-CCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHH
Q 019393 183 TIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAE-DDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNT 261 (341)
Q Consensus 183 TI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~-~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kA 261 (341)
+||+++|+..- ...-+...|.+.|.|..+-|++ .||-.+ .++.|+ +||||..-.++.+|
T Consensus 517 ~lfvkNlnf~T----------t~e~l~~~F~k~G~VlS~~I~kkkd~~~k-------~lSmGf---gFVEF~~~e~A~~a 576 (725)
T KOG0110|consen 517 KLFVKNLNFDT----------TLEDLEDLFSKQGTVLSIEISKKKDPANK-------YLSMGF---GFVEFAKPESAQAA 576 (725)
T ss_pred hhhhhcCCccc----------chhHHHHHHHhcCeEEEEEEecccccccc-------ccccce---eEEEecCHHHHHHH
Confidence 37777777544 5566889999999999999999 445442 234589 99999999999999
Q ss_pred HHHhcCccceecCceeEEEEE
Q 019393 262 LKVLCGRSMQKQGSQLKADYE 282 (341)
Q Consensus 262 M~aLrGmKL~~kGk~l~a~ik 282 (341)
|++|.|.-| +|..+.|.|-
T Consensus 577 ~k~lqgtvl--dGH~l~lk~S 595 (725)
T KOG0110|consen 577 LKALQGTVL--DGHKLELKIS 595 (725)
T ss_pred HHHhcCcee--cCceEEEEec
Confidence 999999988 8888887774
No 55
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=94.47 E-value=0.075 Score=54.58 Aligned_cols=78 Identities=21% Similarity=0.293 Sum_probs=63.5
Q ss_pred CCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHH
Q 019393 181 PDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYN 260 (341)
Q Consensus 181 PDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~k 260 (341)
.=|||+.+||..- ++..|..+|..||.|+..-|..--|=+ ...|-+||-|++-.+-..
T Consensus 288 ~~~i~V~nlP~da----------~~~~l~~~Fk~FG~Ik~~~I~vr~~~~------------~~~~fgFV~f~~~~~~~~ 345 (419)
T KOG0116|consen 288 GLGIFVKNLPPDA----------TPAELEEVFKQFGPIKEGGIQVRSPGG------------KNPCFGFVEFENAAAVQN 345 (419)
T ss_pred ccceEeecCCCCC----------CHHHHHHHHhhcccccccceEEeccCC------------CcCceEEEEEeecchhhh
Confidence 3459999999887 777799999999999999998865221 222889999999999999
Q ss_pred HHHHhcCccceecCceeEEEEEE
Q 019393 261 TLKVLCGRSMQKQGSQLKADYEV 283 (341)
Q Consensus 261 AM~aLrGmKL~~kGk~l~a~ikV 283 (341)
|++|= +++..|+.+.+.-|-
T Consensus 346 ~i~As---p~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 346 AIEAS---PLEIGGRKLNVEEKR 365 (419)
T ss_pred hhhcC---ccccCCeeEEEEecc
Confidence 99987 777778777766654
No 56
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=94.41 E-value=0.046 Score=56.47 Aligned_cols=115 Identities=17% Similarity=0.234 Sum_probs=75.5
Q ss_pred HHhhccCeeEEecCccceeEEEcccCCCchhhhhcHHHHhhccCCCCCCCCCCCCeEEEcCCccccccCCCCCCCCcHHH
Q 019393 128 IVEKMDGIELNLEGVKYKLSVVIPIADDFEKMRKDWEEFYAFGNRGYSRGKQEPDTIVIKGVPSRWFAEPRVSSKPSMLV 207 (341)
Q Consensus 128 l~~kLdG~~lkLsGf~~~LkV~a~es~dFp~~rhdWesff~d~~~~~~~~geRPDTI~l~gLP~rWFa~~~~s~kPSE~v 207 (341)
.+..|+.+ ..|.|-..++.|+-+++..- + -. .|+ .+++.-|+ -+-+|.-
T Consensus 92 a~~Alhn~-ktlpG~~~pvqvk~Ad~E~e---------------r-~~--~e~--KLFvg~ls----------K~~te~e 140 (510)
T KOG0144|consen 92 AINALHNQ-KTLPGMHHPVQVKYADGERE---------------R-IV--EER--KLFVGMLS----------KQCTENE 140 (510)
T ss_pred HHHHhhcc-cccCCCCcceeecccchhhh---------------c-cc--cch--hhhhhhcc----------ccccHHH
Confidence 34566654 46788888888876663100 0 00 011 23333333 3448999
Q ss_pred HHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHHHHhcCccceecCceeEEEEEEeecc
Q 019393 208 THTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTLKVLCGRSMQKQGSQLKADYEVTWDK 287 (341)
Q Consensus 208 l~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM~aLrGmKL~~kGk~l~a~ikV~fD~ 287 (341)
++.||++||.|.++-|- .||++.. .|- |||+|.--.-.+.||++|.|.--|..-. +-+-|-|--
T Consensus 141 vr~iFs~fG~Ied~~il-rd~~~~s---------RGc---aFV~fstke~A~~Aika~ng~~tmeGcs---~PLVVkFAD 204 (510)
T KOG0144|consen 141 VREIFSRFGHIEDCYIL-RDPDGLS---------RGC---AFVKFSTKEMAVAAIKALNGTQTMEGCS---QPLVVKFAD 204 (510)
T ss_pred HHHHHHhhCccchhhhe-ecccccc---------cce---eEEEEehHHHHHHHHHhhccceeeccCC---CceEEEecc
Confidence 99999999999999885 4466654 377 9999999999999999999976664311 234456644
Q ss_pred cC
Q 019393 288 DG 289 (341)
Q Consensus 288 tk 289 (341)
|+
T Consensus 205 tq 206 (510)
T KOG0144|consen 205 TQ 206 (510)
T ss_pred cC
Confidence 43
No 57
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=94.35 E-value=0.13 Score=50.60 Aligned_cols=83 Identities=18% Similarity=0.366 Sum_probs=66.6
Q ss_pred hcHHHHhhccCCCCCCCCCCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCc
Q 019393 161 KDWEEFYAFGNRGYSRGKQEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDI 240 (341)
Q Consensus 161 hdWesff~d~~~~~~~~geRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~ 240 (341)
+..|+-|..++- -=-|||+.|++.-- +|+++|+.|++||.|-.|-|=-+-
T Consensus 151 ltfdeV~NQssp-------~NtsVY~G~I~~~l----------te~~mr~~Fs~fG~I~EVRvFk~q------------- 200 (321)
T KOG0148|consen 151 LTFDEVYNQSSP-------DNTSVYVGNIASGL----------TEDLMRQTFSPFGPIQEVRVFKDQ------------- 200 (321)
T ss_pred ccHHHHhccCCC-------CCceEEeCCcCccc----------cHHHHHHhcccCCcceEEEEeccc-------------
Confidence 566666655431 11299999998822 899999999999999999885442
Q ss_pred ccceeEEEEEEeccchHHHHHHHHhcCccceecCceeEEE
Q 019393 241 ISGLHCKIVVQFEKYRDFYNTLKVLCGRSMQKQGSQLKAD 280 (341)
Q Consensus 241 ~~gL~feayVQy~ey~~F~kAM~aLrGmKL~~kGk~l~a~ 280 (341)
|+ |||-|+...+..+|+-...|..+ .|--++|.
T Consensus 201 --GY---aFVrF~tkEaAahAIv~mNntei--~G~~VkCs 233 (321)
T KOG0148|consen 201 --GY---AFVRFETKEAAAHAIVQMNNTEI--GGQLVRCS 233 (321)
T ss_pred --ce---EEEEecchhhHHHHHHHhcCcee--CceEEEEe
Confidence 56 99999999999999999999988 77777774
No 58
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=94.27 E-value=0.1 Score=54.20 Aligned_cols=75 Identities=20% Similarity=0.399 Sum_probs=60.6
Q ss_pred CCCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchH
Q 019393 178 KQEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRD 257 (341)
Q Consensus 178 geRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~ 257 (341)
....++|.|++||+.. .=.+|+.-|--||.|.-.|| |.. ++.. ..|.|....+
T Consensus 533 arKa~qIiirNlP~df----------TWqmlrDKfre~G~v~yadi-me~--Gksk--------------GVVrF~s~ed 585 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDF----------TWQMLRDKFREIGHVLYADI-MEN--GKSK--------------GVVRFFSPED 585 (608)
T ss_pred cccccEEEEecCCccc----------cHHHHHHHHHhccceehhhh-hcc--CCcc--------------ceEEecCHHH
Confidence 4567999999999765 44679999999999999999 542 2222 3799999999
Q ss_pred HHHHHHHhcCccceecCceeEEEE
Q 019393 258 FYNTLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 258 F~kAM~aLrGmKL~~kGk~l~a~i 281 (341)
..+|+..+.||+| +|+.++++|
T Consensus 586 AEra~a~Mngs~l--~Gr~I~V~y 607 (608)
T KOG4212|consen 586 AERACALMNGSRL--DGRNIKVTY 607 (608)
T ss_pred HHHHHHHhccCcc--cCceeeeee
Confidence 9999999999999 887544443
No 59
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=94.02 E-value=0.05 Score=57.31 Aligned_cols=67 Identities=30% Similarity=0.505 Sum_probs=54.5
Q ss_pred eEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHH
Q 019393 183 TIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTL 262 (341)
Q Consensus 183 TI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM 262 (341)
|+.|-+||--= |+.-|+.+|+.||+||- |-|. |-. .|+ +||.|=+-.+...|+
T Consensus 77 ~L~v~nl~~~V----------sn~~L~~~f~~yGeir~--ir~t-~~~-----------~~~---~~v~FyDvR~A~~Al 129 (549)
T KOG4660|consen 77 TLVVFNLPRSV----------SNDTLLRIFGAYGEIRE--IRET-PNK-----------RGI---VFVEFYDVRDAERAL 129 (549)
T ss_pred eEEEEecCCcC----------CHHHHHHHHHhhcchhh--hhcc-ccc-----------Cce---EEEEEeehHhHHHHH
Confidence 78888888654 89999999999999998 4443 221 256 999999999999999
Q ss_pred HHhcCccceecCceeE
Q 019393 263 KVLCGRSMQKQGSQLK 278 (341)
Q Consensus 263 ~aLrGmKL~~kGk~l~ 278 (341)
++||+..+ .|++++
T Consensus 130 k~l~~~~~--~~~~~k 143 (549)
T KOG4660|consen 130 KALNRREI--AGKRIK 143 (549)
T ss_pred HHHHHHHh--hhhhhc
Confidence 99999999 666655
No 60
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=93.97 E-value=0.19 Score=47.77 Aligned_cols=67 Identities=27% Similarity=0.407 Sum_probs=49.2
Q ss_pred CCCC-eEEEcCCccccccCCCCCCCCcHHHHHH----HhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEec
Q 019393 179 QEPD-TIVIKGVPSRWFAEPRVSSKPSMLVTHT----VFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFE 253 (341)
Q Consensus 179 eRPD-TI~l~gLP~rWFa~~~~s~kPSE~vl~~----vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ 253 (341)
..|- ||||.+|+=+= --+.|++ +|++||+| |||.++... ++. |= |||-|.
T Consensus 6 ~~pn~TlYInnLnekI----------~~~elkrsL~~LFsqfG~i--ldI~a~kt~-KmR---------GQ---A~VvFk 60 (221)
T KOG4206|consen 6 VNPNGTLYINNLNEKI----------KKDELKRSLYLLFSQFGKI--LDISAFKTP-KMR---------GQ---AFVVFK 60 (221)
T ss_pred cCCCceEeehhccccc----------cHHHHHHHHHHHHHhhCCe--EEEEecCCC-Ccc---------Cc---eEEEec
Confidence 3444 99999997654 3344555 99999998 566666322 211 33 999999
Q ss_pred cchHHHHHHHHhcCccc
Q 019393 254 KYRDFYNTLKVLCGRSM 270 (341)
Q Consensus 254 ey~~F~kAM~aLrGmKL 270 (341)
+-.....||.+|.|--.
T Consensus 61 ~~~~As~A~r~l~gfpF 77 (221)
T KOG4206|consen 61 ETEAASAALRALQGFPF 77 (221)
T ss_pred ChhHHHHHHHHhcCCcc
Confidence 99999999999999654
No 61
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=93.76 E-value=0.081 Score=50.06 Aligned_cols=110 Identities=19% Similarity=0.235 Sum_probs=73.7
Q ss_pred HHHhhccCeeEEecCccceeEEEcccC------CCchhhhhcHHHHhhccCCCCCCCCCCCCeEEEcCCccccccCCCCC
Q 019393 127 YIVEKMDGIELNLEGVKYKLSVVIPIA------DDFEKMRKDWEEFYAFGNRGYSRGKQEPDTIVIKGVPSRWFAEPRVS 200 (341)
Q Consensus 127 ~l~~kLdG~~lkLsGf~~~LkV~a~es------~dFp~~rhdWesff~d~~~~~~~~geRPDTI~l~gLP~rWFa~~~~s 200 (341)
-++--|||++|.-.. +.|.-+.. ....+-++.|.+++.- +..-.--+.++.++.+-
T Consensus 50 Dav~~l~~~~l~~e~----~vve~~r~~~~~~g~~~~g~r~~~~~~~~~-------p~~s~~r~~~~~~~~r~------- 111 (216)
T KOG0106|consen 50 DAVHDLDGKELCGER----LVVEHARGKRRGRGRPRGGDRRSDSRRYRP-------PSRTHFRLIVRNLSLRV------- 111 (216)
T ss_pred cccchhcCceeccee----eeeecccccccccCCCCCCCccchhhccCC-------cccccceeeeccchhhh-------
Confidence 567899999987664 44443331 1111134445544332 12333456666665544
Q ss_pred CCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHHHHhcCccceecCceeEE
Q 019393 201 SKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTLKVLCGRSMQKQGSQLKA 279 (341)
Q Consensus 201 ~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM~aLrGmKL~~kGk~l~a 279 (341)
|..-+...|..+|++.+.++ +. +. ++|||.++.+..+|++.|.|.+| .|+.+++
T Consensus 112 ---~~qdl~d~~~~~g~~~~~~~------~~-----------~~---~~v~Fs~~~da~ra~~~l~~~~~--~~~~l~~ 165 (216)
T KOG0106|consen 112 ---SWQDLKDHFRPAGEVTYVDA------RR-----------NF---AFVEFSEQEDAKRALEKLDGKKL--NGRRISV 165 (216)
T ss_pred ---hHHHHhhhhcccCCCchhhh------hc-----------cc---cceeehhhhhhhhcchhccchhh--cCceeee
Confidence 56669999999999977776 11 22 89999999999999999999999 7766666
No 62
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=93.76 E-value=0.18 Score=42.22 Aligned_cols=58 Identities=19% Similarity=0.291 Sum_probs=36.6
Q ss_pred CCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHHHHhcCc---cceecCcee
Q 019393 202 KPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTLKVLCGR---SMQKQGSQL 277 (341)
Q Consensus 202 kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM~aLrGm---KL~~kGk~l 277 (341)
..|.+.++.+|+.||.|.-||+...+. ++||-|..-.+..+|++++.-- +|..++..+
T Consensus 12 ~~~re~iK~~f~~~g~V~yVD~~~G~~------------------~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~ 72 (105)
T PF08777_consen 12 PTSREDIKEAFSQFGEVAYVDFSRGDT------------------EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEV 72 (105)
T ss_dssp S--HHHHHHHT-SS--EEEEE--TT-S------------------EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSE
T ss_pred CcCHHHHHHHHHhcCCcceEEecCCCC------------------EEEEEECCcchHHHHHHHHHhccCCceEEcCceE
Confidence 347899999999999999999876543 3999999999999999988877 665555443
No 63
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=93.61 E-value=0.13 Score=51.01 Aligned_cols=73 Identities=18% Similarity=0.332 Sum_probs=58.7
Q ss_pred CCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHH
Q 019393 181 PDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYN 260 (341)
Q Consensus 181 PDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~k 260 (341)
|+.+.|.+||-+- .+.-++.+||+||||-.+||.-. | +||-.|+=..--.
T Consensus 2 ~~KLFIGNLp~~~----------~~~elr~lFe~ygkVlECDIvKN--Y------------------gFVHiEdktaaed 51 (346)
T KOG0109|consen 2 PVKLFIGNLPREA----------TEQELRSLFEQYGKVLECDIVKN--Y------------------GFVHIEDKTAAED 51 (346)
T ss_pred ccchhccCCCccc----------chHHHHHHHHhhCceEeeeeecc--c------------------ceEEeecccccHH
Confidence 4556677777554 66679999999999999999754 2 8899999999999
Q ss_pred HHHHhcCccceecCceeEEEEEEeecccC
Q 019393 261 TLKVLCGRSMQKQGSQLKADYEVTWDKDG 289 (341)
Q Consensus 261 AM~aLrGmKL~~kGk~l~a~ikV~fD~tk 289 (341)
|+..|.|.|| .| +||+|.=-|+|
T Consensus 52 airNLhgYtL--hg----~nInVeaSksK 74 (346)
T KOG0109|consen 52 AIRNLHGYTL--HG----VNINVEASKSK 74 (346)
T ss_pred HHhhccccee--cc----eEEEEEecccc
Confidence 9999999999 55 56777666666
No 64
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=92.69 E-value=0.15 Score=54.29 Aligned_cols=85 Identities=26% Similarity=0.419 Sum_probs=62.8
Q ss_pred eEEEcCCccccccCCCCCCC--CcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHH
Q 019393 183 TIVIKGVPSRWFAEPRVSSK--PSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYN 260 (341)
Q Consensus 183 TI~l~gLP~rWFa~~~~s~k--PSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~k 260 (341)
.|++.|.|.== +.+ -=-.|++.||+++|+|-|+-+|.+..-+ .-|+ +|+.|..-.+...
T Consensus 60 vVvv~g~PvV~------~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg----------tkG~---lf~E~~~~~~A~~ 120 (698)
T KOG2314|consen 60 VVVVDGAPVVG------PARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG----------TKGY---LFVEYASMRDAKK 120 (698)
T ss_pred EEEECCCcccC------hhHHHHHHHHHHHHHHhhccccceeeccCccCC----------eeeE---EEEEecChhhHHH
Confidence 47889999632 111 0235788999999999999999873322 3488 8999999999999
Q ss_pred HHHHhcCccceecCceeEEEEEEeecc
Q 019393 261 TLKVLCGRSMQKQGSQLKADYEVTWDK 287 (341)
Q Consensus 261 AM~aLrGmKL~~kGk~l~a~ikV~fD~ 287 (341)
|.+.|.|.+|-+ .-+|.++-==+|++
T Consensus 121 aVK~l~G~~ldk-nHtf~v~~f~d~ek 146 (698)
T KOG2314|consen 121 AVKSLNGKRLDK-NHTFFVRLFKDFEK 146 (698)
T ss_pred HHHhcccceecc-cceEEeehhhhHHH
Confidence 999999999944 33566655555554
No 65
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=91.82 E-value=0.18 Score=52.10 Aligned_cols=66 Identities=23% Similarity=0.274 Sum_probs=49.9
Q ss_pred CCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHHHHhcCccceecCceeEEEE
Q 019393 202 KPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 202 kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM~aLrGmKL~~kGk~l~a~i 281 (341)
.-|-+|||+||++||.|-.|-- +.| .=.|.|-|||.+-....-|=-+|-|+..-. | .|..
T Consensus 161 pVslDVLHqvFS~fG~VlKIiT-----F~K-----------nn~FQALvQy~d~~sAq~AK~aLdGqnIyn-g---cCtL 220 (492)
T KOG1190|consen 161 PVSLDVLHQVFSKFGFVLKIIT-----FTK-----------NNGFQALVQYTDAVSAQAAKLALDGQNIYN-G---CCTL 220 (492)
T ss_pred eeEHHHHHHHHhhcceeEEEEE-----Eec-----------ccchhhhhhccchhhHHHHHHhccCCcccC-c---eeEE
Confidence 4499999999999999987631 222 234789999999999999999999988733 3 4555
Q ss_pred EEeecc
Q 019393 282 EVTWDK 287 (341)
Q Consensus 282 kV~fD~ 287 (341)
++||-+
T Consensus 221 rId~Sk 226 (492)
T KOG1190|consen 221 RIDFSK 226 (492)
T ss_pred Eeehhh
Confidence 555543
No 66
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=91.16 E-value=0.52 Score=34.89 Aligned_cols=53 Identities=21% Similarity=0.394 Sum_probs=37.3
Q ss_pred CCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHH
Q 019393 181 PDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYN 260 (341)
Q Consensus 181 PDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~k 260 (341)
|.+|.+.|.|-. ..+.+..=|..||+|-++.+|..-+ . +||+|..-.+..+
T Consensus 1 ~~wI~V~Gf~~~-----------~~~~vl~~F~~fGeI~~~~~~~~~~---------------~---~~l~y~~~~~ae~ 51 (53)
T PF14605_consen 1 STWISVSGFPPD-----------LAEEVLEHFASFGEIVDIYVPESTN---------------W---MYLKYKSRKDAEK 51 (53)
T ss_pred CcEEEEEeECch-----------HHHHHHHHHHhcCCEEEEEcCCCCc---------------E---EEEEECCHHHHHh
Confidence 346777776621 3344556899999999999992222 2 8999998888777
Q ss_pred HH
Q 019393 261 TL 262 (341)
Q Consensus 261 AM 262 (341)
|+
T Consensus 52 Al 53 (53)
T PF14605_consen 52 AL 53 (53)
T ss_pred hC
Confidence 74
No 67
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=90.97 E-value=0.67 Score=51.05 Aligned_cols=62 Identities=18% Similarity=0.338 Sum_probs=50.1
Q ss_pred eEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHH
Q 019393 183 TIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTL 262 (341)
Q Consensus 183 TI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM 262 (341)
|+.|.|||-+- -|..|..+||.||.|-.|++-. ||+ - |||-...-.+..+||
T Consensus 423 TLwvG~i~k~v----------~e~dL~~~feefGeiqSi~li~--~R~-------------c---AfI~M~~RqdA~kal 474 (894)
T KOG0132|consen 423 TLWVGGIPKNV----------TEQDLANLFEEFGEIQSIILIP--PRG-------------C---AFIKMVRRQDAEKAL 474 (894)
T ss_pred eeeeccccchh----------hHHHHHHHHHhcccceeEeecc--CCc-------------e---eEEEEeehhHHHHHH
Confidence 34455665544 8899999999999999988643 443 3 999999999999999
Q ss_pred HHhcCcccee
Q 019393 263 KVLCGRSMQK 272 (341)
Q Consensus 263 ~aLrGmKL~~ 272 (341)
.+|+..|+..
T Consensus 475 qkl~n~kv~~ 484 (894)
T KOG0132|consen 475 QKLSNVKVAD 484 (894)
T ss_pred HHHhcccccc
Confidence 9999998854
No 68
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=90.97 E-value=0.65 Score=46.81 Aligned_cols=71 Identities=23% Similarity=0.339 Sum_probs=57.4
Q ss_pred CCCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchH
Q 019393 178 KQEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRD 257 (341)
Q Consensus 178 geRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~ 257 (341)
..+-..+++.+++. .-++.-+...|..||+|-.+.|+.+..- + ..|+ +||||..+.+
T Consensus 164 ~~~~t~v~vk~~~~----------~~~~~~l~~~f~~~g~i~s~~v~~~~~g-~---------~~~~---gfv~f~~~e~ 220 (369)
T KOG0123|consen 164 KKRFTNVYVKNLEE----------DSTDEELKDLFSAYGSITSVAVMRDSIG-K---------SKGF---GFVNFENPED 220 (369)
T ss_pred hhhhhhhheecccc----------ccchHHHHHhhcccCcceEEEEeecCCC-C---------CCCc---cceeecChhH
Confidence 56667777777771 2277889999999999999999886332 2 1256 9999999999
Q ss_pred HHHHHHHhcCccce
Q 019393 258 FYNTLKVLCGRSMQ 271 (341)
Q Consensus 258 F~kAM~aLrGmKL~ 271 (341)
..+|++.|+|...-
T Consensus 221 a~~av~~l~~~~~~ 234 (369)
T KOG0123|consen 221 AKKAVETLNGKIFG 234 (369)
T ss_pred HHHHHHhccCCcCC
Confidence 99999999999983
No 69
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=90.96 E-value=0.51 Score=46.61 Aligned_cols=78 Identities=17% Similarity=0.358 Sum_probs=62.2
Q ss_pred CeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHH
Q 019393 182 DTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNT 261 (341)
Q Consensus 182 DTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kA 261 (341)
.-+.+-=||-.- .++-++..|.+-|+|-.+.+.-|.-.+. +-|+ .||.|....|..+|
T Consensus 42 TNLIvNYLPQ~M----------TqdE~rSLF~SiGeiEScKLvRDKitGq---------SLGY---GFVNYv~p~DAe~A 99 (360)
T KOG0145|consen 42 TNLIVNYLPQNM----------TQDELRSLFGSIGEIESCKLVRDKITGQ---------SLGY---GFVNYVRPKDAEKA 99 (360)
T ss_pred ceeeeeeccccc----------CHHHHHHHhhcccceeeeeeeecccccc---------cccc---ceeeecChHHHHHH
Confidence 345566666555 6777999999999999998887754444 3377 89999999999999
Q ss_pred HHHhcCccceecCceeEEEEEEeecc
Q 019393 262 LKVLCGRSMQKQGSQLKADYEVTWDK 287 (341)
Q Consensus 262 M~aLrGmKL~~kGk~l~a~ikV~fD~ 287 (341)
++.|.|-+|+- -.|||++-+
T Consensus 100 intlNGLrLQ~------KTIKVSyAR 119 (360)
T KOG0145|consen 100 INTLNGLRLQN------KTIKVSYAR 119 (360)
T ss_pred Hhhhcceeecc------ceEEEEecc
Confidence 99999999965 368888866
No 70
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=90.91 E-value=0.58 Score=46.25 Aligned_cols=62 Identities=21% Similarity=0.352 Sum_probs=52.2
Q ss_pred CcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHHHHhcCccceecCceeE
Q 019393 203 PSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTLKVLCGRSMQKQGSQLK 278 (341)
Q Consensus 203 PSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM~aLrGmKL~~kGk~l~ 278 (341)
-+-+.|+.+|.+||+|.+.-|.-|--..|.. |. +||-|-.-.+..+|++.+.|.=| .++++.
T Consensus 74 I~~e~lr~aF~pFGevS~akvirD~~T~KsK---------GY---gFVSf~~k~dAEnAI~~MnGqWl--G~R~IR 135 (321)
T KOG0148|consen 74 IDNEKLREAFAPFGEVSDAKVIRDMNTGKSK---------GY---GFVSFPNKEDAENAIQQMNGQWL--GRRTIR 135 (321)
T ss_pred cchHHHHHHhccccccccceEeecccCCccc---------ce---eEEeccchHHHHHHHHHhCCeee--ccceee
Confidence 3567799999999999999998886666654 88 99999999999999999999877 445443
No 71
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=90.18 E-value=0.28 Score=54.53 Aligned_cols=70 Identities=13% Similarity=0.106 Sum_probs=55.9
Q ss_pred cHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHHHHhcCccceecCceeEEEEEE
Q 019393 204 SMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTLKVLCGRSMQKQGSQLKADYEV 283 (341)
Q Consensus 204 SE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM~aLrGmKL~~kGk~l~a~ikV 283 (341)
....+.++|..||.||+||+---+|| |||||+.-..-.-||+.+||-+|=.-.+. +.|
T Consensus 468 p~~~l~r~fd~fGpir~Idy~hgq~y------------------ayi~yes~~~aq~a~~~~rgap~G~P~~r----~rv 525 (975)
T KOG0112|consen 468 PVSRLNREFDRFGPIRIIDYRHGQPY------------------AYIQYESPPAAQAATHDMRGAPLGGPPRR----LRV 525 (975)
T ss_pred hHHHHHHHhhccCcceeeecccCCcc------------------eeeecccCccchhhHHHHhcCcCCCCCcc----ccc
Confidence 46778899999999999998777777 99999999999999999999999332244 667
Q ss_pred eecccCCCcccc
Q 019393 284 TWDKDGFFWDSR 295 (341)
Q Consensus 284 ~fD~tkhlS~~~ 295 (341)
+|-.+-|=...+
T Consensus 526 dla~~~~~~Pqq 537 (975)
T KOG0112|consen 526 DLASPPGATPQQ 537 (975)
T ss_pred ccccCCCCChhh
Confidence 776655544333
No 72
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=89.77 E-value=1.1 Score=45.44 Aligned_cols=88 Identities=17% Similarity=0.265 Sum_probs=67.8
Q ss_pred CCCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchH
Q 019393 178 KQEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRD 257 (341)
Q Consensus 178 geRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~ 257 (341)
.+.--|+||.||=.. -+|..++.=|.+||.||.|-|-. ++ |- |||||.--.+
T Consensus 225 D~~I~tLyIg~l~d~----------v~e~dIrdhFyqyGeirsi~~~~----~~-----------~C---AFv~ftTR~a 276 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDE----------VLEQDIRDHFYQYGEIRSIRILP----RK-----------GC---AFVTFTTREA 276 (377)
T ss_pred ccceeEEEecccccc----------hhHHHHHHHHhhcCCeeeEEeec----cc-----------cc---ceeeehhhHH
Confidence 566679999998442 28889999999999999998743 22 22 9999999999
Q ss_pred HHHHHHHhcCccceecCceeEEEEEEeeccc-CCCcccccch
Q 019393 258 FYNTLKVLCGRSMQKQGSQLKADYEVTWDKD-GFFWDSRNQA 298 (341)
Q Consensus 258 F~kAM~aLrGmKL~~kGk~l~a~ikV~fD~t-khlS~~~i~~ 298 (341)
..+|+..+=. +|+-+|.++ +|.|-++ +|.+....++
T Consensus 277 AE~Aae~~~n-~lvI~G~Rl----~i~Wg~~~~~a~~g~n~~ 313 (377)
T KOG0153|consen 277 AEKAAEKSFN-KLVINGFRL----KIKWGRPKQAAQGGENEV 313 (377)
T ss_pred HHHHHHhhcc-eeeecceEE----EEEeCCCcccccCCcccc
Confidence 9999999888 888888765 4458888 5555544433
No 73
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=89.59 E-value=0.59 Score=47.51 Aligned_cols=100 Identities=19% Similarity=0.359 Sum_probs=71.7
Q ss_pred CeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHH
Q 019393 182 DTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNT 261 (341)
Q Consensus 182 DTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kA 261 (341)
.-+|+-|||-+-=-+ + ....+--+.-|..||+|..|-|----|.-... ++ |.-+||.|..-.+..+|
T Consensus 115 NLvYVigi~pkva~E-e---~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst--------~~-h~gvYITy~~kedAarc 181 (480)
T COG5175 115 NLVYVIGIPPKVADE-E---VAPVLKRHEYFGQYGKIKKIVVNKKTSSLNST--------AS-HAGVYITYSTKEDAARC 181 (480)
T ss_pred ceeEEecCCCCCCcc-c---ccccccchhhhhhccceeEEEecccccccccc--------cc-cceEEEEecchHHHHHH
Confidence 468888998776211 1 11112235789999999998875443322211 12 45589999999999999
Q ss_pred HHHhcCccceecCceeEEEEEEeecccCCCccccc
Q 019393 262 LKVLCGRSMQKQGSQLKADYEVTWDKDGFFWDSRN 296 (341)
Q Consensus 262 M~aLrGmKL~~kGk~l~a~ikV~fD~tkhlS~~~i 296 (341)
+.+.-|--| +|+.|+|.|--+==.|.+|++..-
T Consensus 182 Ia~vDgs~~--DGr~lkatYGTTKYCtsYLRn~~C 214 (480)
T COG5175 182 IAEVDGSLL--DGRVLKATYGTTKYCTSYLRNAVC 214 (480)
T ss_pred HHHhccccc--cCceEeeecCchHHHHHHHcCCCC
Confidence 999999988 999999998777777777887643
No 74
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=89.53 E-value=1.7 Score=41.85 Aligned_cols=82 Identities=18% Similarity=0.336 Sum_probs=65.5
Q ss_pred CCCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchH
Q 019393 178 KQEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRD 257 (341)
Q Consensus 178 geRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~ 257 (341)
..+|-+|+|.+||-.- ..+-|++.|+.||.+..+-|-++ +.+... |. |=|-|..+.+
T Consensus 80 ~~~~~~v~v~NL~~~V----------~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~---------Gt---a~v~~~r~~D 136 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGV----------IDADLKELFAEFGELKRVAVHYD-RAGRSL---------GT---ADVSFNRRDD 136 (243)
T ss_pred CCCcceeeeecCCcCc----------chHHHHHHHHHhccceEEeeccC-CCCCCC---------cc---ceeeecchHh
Confidence 4788899999999876 77889999999999998887665 443322 44 6678899999
Q ss_pred HHHHHHHhcCccceecCceeEEEEEEe
Q 019393 258 FYNTLKVLCGRSMQKQGSQLKADYEVT 284 (341)
Q Consensus 258 F~kAM~aLrGmKL~~kGk~l~a~ikV~ 284 (341)
...||+.+.|--| +|+.++.++..+
T Consensus 137 A~~avk~~~gv~l--dG~~mk~~~i~~ 161 (243)
T KOG0533|consen 137 AERAVKKYNGVAL--DGRPMKIEIISS 161 (243)
T ss_pred HHHHHHHhcCccc--CCceeeeEEecC
Confidence 9999999999555 998877776544
No 75
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=88.11 E-value=1.2 Score=46.09 Aligned_cols=64 Identities=19% Similarity=0.329 Sum_probs=51.1
Q ss_pred CCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHHHHhcCccceecCceeEEE
Q 019393 201 SKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTLKVLCGRSMQKQGSQLKAD 280 (341)
Q Consensus 201 ~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM~aLrGmKL~~kGk~l~a~ 280 (341)
+.-.+++|.++|..||.|-+|.|--..+ + .|-|||.+-....-||+.|.|.|| -| |-
T Consensus 308 ~~VT~d~LftlFgvYGdVqRVkil~nkk-----d------------~ALIQmsd~~qAqLA~~hL~g~~l--~g----k~ 364 (492)
T KOG1190|consen 308 EAVTPDVLFTLFGVYGDVQRVKILYNKK-----D------------NALIQMSDGQQAQLAMEHLEGHKL--YG----KK 364 (492)
T ss_pred hccchhHHHHHHhhhcceEEEEeeecCC-----c------------ceeeeecchhHHHHHHHHhhccee--cC----ce
Confidence 4556789999999999999999854322 1 188999999999999999999999 44 56
Q ss_pred EEEeecc
Q 019393 281 YEVTWDK 287 (341)
Q Consensus 281 ikV~fD~ 287 (341)
|.|++-|
T Consensus 365 lrvt~SK 371 (492)
T KOG1190|consen 365 LRVTLSK 371 (492)
T ss_pred EEEeecc
Confidence 6666644
No 76
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=87.91 E-value=1.3 Score=44.77 Aligned_cols=55 Identities=18% Similarity=0.222 Sum_probs=45.2
Q ss_pred CCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHHHHhcCccc
Q 019393 201 SKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTLKVLCGRSM 270 (341)
Q Consensus 201 ~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM~aLrGmKL 270 (341)
..+.|..|..+|++.|+|.+|-|=-+- . +-|. |||+|+...+..+||+++..-.+
T Consensus 8 ~~v~e~~l~~~f~~~~~v~s~rvc~d~-t-----------slgy---~yvnf~~~~da~~A~~~~n~~~~ 62 (369)
T KOG0123|consen 8 PDVTEAMLFDKFSPAGPVLSIRVCRDA-T-----------SLGY---AYVNFQQPADAERALDTMNFDVL 62 (369)
T ss_pred CcCChHHHHHHhcccCCceeEEEeecC-C-----------ccce---EEEecCCHHHHHHHHHHcCCccc
Confidence 346899999999999999999886542 2 2377 99999999999999999876544
No 77
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=86.58 E-value=2.8 Score=39.43 Aligned_cols=81 Identities=15% Similarity=0.266 Sum_probs=58.3
Q ss_pred cHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHHHHhcCccceecCceeEEEEEE
Q 019393 204 SMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTLKVLCGRSMQKQGSQLKADYEV 283 (341)
Q Consensus 204 SE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM~aLrGmKL~~kGk~l~a~ikV 283 (341)
-|.+|+.+|++||.|-.--=||-||+..+. .|. +||-|..+..-..|+.++.|.=| -.+..++.|--
T Consensus 109 De~~L~dtFsafG~l~~~P~i~rd~~tg~~--------~~~---g~i~~~sfeasd~ai~s~ngq~l--~nr~itv~ya~ 175 (203)
T KOG0131|consen 109 DEKLLYDTFSAFGVLISPPKIMRDPDTGNP--------KGF---GFINYASFEASDAAIGSMNGQYL--CNRPITVSYAF 175 (203)
T ss_pred hHHHHHHHHHhccccccCCcccccccCCCC--------CCC---eEEechhHHHHHHHHHHhccchh--cCCceEEEEEE
Confidence 678899999999999876667777773322 256 89999999999999999999877 44555555554
Q ss_pred eecccCCCcccccchHH
Q 019393 284 TWDKDGFFWDSRNQAEE 300 (341)
Q Consensus 284 ~fD~tkhlS~~~i~~~e 300 (341)
-=|+-+ +...-..|
T Consensus 176 k~~~kg---~~~g~~~~ 189 (203)
T KOG0131|consen 176 KKDTKG---ERHGTAAE 189 (203)
T ss_pred ecCCCc---ccCCCHHH
Confidence 445544 44455555
No 78
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=85.54 E-value=1.3 Score=45.45 Aligned_cols=53 Identities=15% Similarity=0.246 Sum_probs=39.5
Q ss_pred CCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHHHHhc
Q 019393 202 KPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTLKVLC 266 (341)
Q Consensus 202 kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM~aLr 266 (341)
--||..++.|||.||+|..+.+.-..-.+... |+ .|+.|.+-.+-..|+..++
T Consensus 221 DLSe~DiKSVFEAFG~I~~C~LAr~pt~~~Hk---------Gy---GfiEy~n~qs~~eAiasMN 273 (544)
T KOG0124|consen 221 DLSETDIKSVFEAFGEIVKCQLARAPTGRGHK---------GY---GFIEYNNLQSQSEAIASMN 273 (544)
T ss_pred CccHHHHHHHHHhhcceeeEEeeccCCCCCcc---------ce---eeEEeccccchHHHhhhcc
Confidence 44999999999999999999887653333322 67 8888888777776665443
No 79
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=85.53 E-value=1.3 Score=42.03 Aligned_cols=61 Identities=23% Similarity=0.402 Sum_probs=47.9
Q ss_pred HHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHHHHhcCccceecCceeEEEEEE
Q 019393 208 THTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTLKVLCGRSMQKQGSQLKADYEV 283 (341)
Q Consensus 208 l~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM~aLrGmKL~~kGk~l~a~ikV 283 (341)
+...|+..|.|.+|+||.+.-.+.. -|. +||-|.+|.+-.+|+. |.|--+ .|.+.++..+-
T Consensus 118 ~e~hf~~Cg~i~~~ti~~d~~~~~~---------k~~---~yvef~~~~~~~~ay~-l~gs~i--~~~~i~vt~~r 178 (231)
T KOG4209|consen 118 IELHFESCGGINRVTVPKDKFRGHP---------KGF---AYVEFSSYELVEEAYK-LDGSEI--PGPAIEVTLKR 178 (231)
T ss_pred hhheeeccCCccceeeeccccCCCc---------cee---EEEecccHhhhHHHhh-cCCccc--ccccceeeeee
Confidence 7889999999999999998655432 266 9999999999999998 777776 56655554443
No 80
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=84.00 E-value=3.2 Score=41.28 Aligned_cols=68 Identities=21% Similarity=0.312 Sum_probs=52.2
Q ss_pred CCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHHHHhcCccceec-CceeEE
Q 019393 201 SKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTLKVLCGRSMQKQ-GSQLKA 279 (341)
Q Consensus 201 ~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM~aLrGmKL~~k-Gk~l~a 279 (341)
..-||+-+++.|.+||.|-.+-+--- |-+. +.|- |||-|....+..-|+++|.|-.-|-. .+.|-+
T Consensus 29 kqq~e~dvrrlf~pfG~~~e~tvlrg-~dg~---------sKGC---AFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVV 95 (371)
T KOG0146|consen 29 KQQSEDDVRRLFQPFGNIEECTVLRG-PDGN---------SKGC---AFVKFSSHAEAQAAINALHGSQTMPGASSSLVV 95 (371)
T ss_pred ccccHHHHHHHhcccCCcceeEEecC-CCCC---------CCCc---eEEEeccchHHHHHHHHhcccccCCCCccceEE
Confidence 34599999999999999988876432 1111 2366 99999999999999999999887764 456665
Q ss_pred EE
Q 019393 280 DY 281 (341)
Q Consensus 280 ~i 281 (341)
.+
T Consensus 96 K~ 97 (371)
T KOG0146|consen 96 KF 97 (371)
T ss_pred Ee
Confidence 54
No 81
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=83.22 E-value=1.3 Score=46.67 Aligned_cols=71 Identities=15% Similarity=0.349 Sum_probs=60.4
Q ss_pred CCCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchH
Q 019393 178 KQEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRD 257 (341)
Q Consensus 178 geRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~ 257 (341)
-.-||.|++.|||-+- .++-+..+-+.||.++.....++-+++- ..|. ||..|....-
T Consensus 286 ~~~~~ki~v~~lp~~l----------~~~q~~Ell~~fg~lk~f~lv~d~~~g~---------skg~---af~ey~dpsv 343 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYL----------TEDQVKELLDSFGPLKAFRLVKDSATGN---------SKGF---AFCEYCDPSV 343 (500)
T ss_pred ccccchhhhccCcCcc----------CHHHHHHHHHhcccchhheeeccccccc---------ccce---eeeeeeCCcc
Confidence 4678899999999876 7888999999999999999998877633 3477 8888888777
Q ss_pred HHHHHHHhcCccc
Q 019393 258 FYNTLKVLCGRSM 270 (341)
Q Consensus 258 F~kAM~aLrGmKL 270 (341)
=-.|+..|.||.|
T Consensus 344 td~A~agLnGm~l 356 (500)
T KOG0120|consen 344 TDQAIAGLNGMQL 356 (500)
T ss_pred hhhhhcccchhhh
Confidence 7779999999999
No 82
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=82.82 E-value=0.19 Score=49.97 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=22.8
Q ss_pred ceeEEEEEEeec-ccCCCcccccchH
Q 019393 275 SQLKADYEVTWD-KDGFFWDSRNQAE 299 (341)
Q Consensus 275 k~l~a~ikV~fD-~tkhlS~~~i~~~ 299 (341)
++.+|+||+.|| +++|++|+.|+++
T Consensus 301 k~e~~kikqe~ddkdk~~ed~e~kkr 326 (445)
T KOG2891|consen 301 KAEACKIKQEFDDKDKHLEDAEIKKR 326 (445)
T ss_pred HHHhhchhhhcCcccchhhHHHHHHH
Confidence 688899999999 9999999999665
No 83
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=82.67 E-value=1.3 Score=46.98 Aligned_cols=54 Identities=20% Similarity=0.369 Sum_probs=45.4
Q ss_pred HHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHHHHhcCccce
Q 019393 205 MLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTLKVLCGRSMQ 271 (341)
Q Consensus 205 E~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM~aLrGmKL~ 271 (341)
+..|..-|+.+|+||.|-|.+|.=.+... |+ +||.|-+-.+..-|+ +|.|.-||
T Consensus 193 pRdL~efFs~~gkVrdVriI~Dr~s~rsk---------gi---~Yvef~D~~sVp~ai-aLsGqrll 246 (549)
T KOG0147|consen 193 PRDLEEFFSIVGKVRDVRIIGDRNSRRSK---------GI---AYVEFCDEQSVPLAI-ALSGQRLL 246 (549)
T ss_pred chhHHHHHHhhcCcceeEeeccccchhhc---------ce---eEEEEecccchhhHh-hhcCCccc
Confidence 34577889999999999999997665533 88 999999988888888 99998885
No 84
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=80.37 E-value=9.2 Score=36.48 Aligned_cols=78 Identities=13% Similarity=0.248 Sum_probs=56.4
Q ss_pred CCCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhcc-CceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccch
Q 019393 178 KQEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTF-GKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYR 256 (341)
Q Consensus 178 geRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~F-GkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~ 256 (341)
++.++.+|+..+|.-.|-. -+..-|..| |.|+.+-..-. ...+ .+-|+ |||+|+.-.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~----------~~~~~~~q~~g~v~r~rlsRn-----krTG----NSKgY---AFVEFEs~e 103 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFET----------EILNYFRQFGGTVTRFRLSRN-----KRTG----NSKGY---AFVEFESEE 103 (214)
T ss_pred cCCccceeecccccchhHH----------HHhhhhhhcCCeeEEEEeecc-----cccC----CcCce---EEEEeccHH
Confidence 6788899999999988652 255666777 88888765432 2222 24488 999999999
Q ss_pred HHHHHHHHhcCccceecCceeEE
Q 019393 257 DFYNTLKVLCGRSMQKQGSQLKA 279 (341)
Q Consensus 257 ~F~kAM~aLrGmKL~~kGk~l~a 279 (341)
-..-|-+++++.=|| |+-|.|
T Consensus 104 VA~IaAETMNNYLl~--e~lL~c 124 (214)
T KOG4208|consen 104 VAKIAAETMNNYLLM--EHLLEC 124 (214)
T ss_pred HHHHHHHHhhhhhhh--hheeee
Confidence 999999999988763 444444
No 85
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=79.72 E-value=2 Score=44.82 Aligned_cols=71 Identities=18% Similarity=0.188 Sum_probs=49.7
Q ss_pred eEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCC---CCCCCcccceeEEEEEEeccchHHH
Q 019393 183 TIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDAD---EDGGDIISGLHCKIVVQFEKYRDFY 259 (341)
Q Consensus 183 TI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~---~~~g~~~~gL~feayVQy~ey~~F~ 259 (341)
||+.++||-.= |-+-|..||.++|.|.+|-| |+|=.-..+ ...+.+.-+-.--|+|.|++-....
T Consensus 233 tivaenLP~Dh----------~~enl~kiFg~~G~IksIRI--ckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~ 300 (484)
T KOG1855|consen 233 TIVAENLPLDH----------SYENLSKIFGTVGSIKSIRI--CKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAAR 300 (484)
T ss_pred eEEEecCCcch----------HHHHHHHHhhcccceeeeee--cCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHH
Confidence 99999999654 66889999999999999887 555311111 1111222222234899999988889
Q ss_pred HHHHHh
Q 019393 260 NTLKVL 265 (341)
Q Consensus 260 kAM~aL 265 (341)
+|-+.|
T Consensus 301 KA~e~~ 306 (484)
T KOG1855|consen 301 KARELL 306 (484)
T ss_pred HHHHhh
Confidence 998888
No 86
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=78.56 E-value=1.6 Score=42.58 Aligned_cols=57 Identities=28% Similarity=0.423 Sum_probs=43.0
Q ss_pred HHhh-ccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHHHHhcCccceecCceeEEEE
Q 019393 210 TVFS-TFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 210 ~vFe-~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM~aLrGmKL~~kGk~l~a~i 281 (341)
+=|+ +||+|.+++| ||-.+..+.++ |||||++-.+..+|.+.|.|+=. .|+.+-|+.
T Consensus 87 ~E~~~kygEiee~~V--c~Nl~~hl~GN-----------VYV~f~~Ee~ae~a~~~lnnRw~--~G~pi~ae~ 144 (260)
T KOG2202|consen 87 TELEDKYGEIEELNV--CDNLGDHLVGN-----------VYVKFRSEEDAEAALEDLNNRWY--NGRPIHAEL 144 (260)
T ss_pred HHHHHHhhhhhhhhh--hcccchhhhhh-----------hhhhcccHHHHHHHHHHHcCccc--cCCcceeee
Confidence 3344 9999999954 44444444333 99999999999999999999987 777666554
No 87
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=78.00 E-value=2.6 Score=43.29 Aligned_cols=49 Identities=22% Similarity=0.257 Sum_probs=36.7
Q ss_pred HHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHHHHh
Q 019393 205 MLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTLKVL 265 (341)
Q Consensus 205 E~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM~aL 265 (341)
-+-|+.||+.||+|.+++|.-+--.+. -.+.|||.|++-.+-.+|.-.+
T Consensus 253 DeDLeiIFSrFG~i~sceVIRD~ktgd------------sLqyaFiEFen~escE~AyFKM 301 (479)
T KOG0415|consen 253 DEDLEIIFSRFGKIVSCEVIRDRKTGD------------SLQYAFIEFENKESCEQAYFKM 301 (479)
T ss_pred ccchhhHHhhcccceeeeEEecccccc------------hhheeeeeecchhhHHHHHhhh
Confidence 345899999999999999987744433 2356999998877777765443
No 88
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=75.91 E-value=19 Score=30.17 Aligned_cols=67 Identities=16% Similarity=0.247 Sum_probs=50.8
Q ss_pred eEEEcCCccccccCCCCCCCCcHHHHHHHhhc--cCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHH
Q 019393 183 TIVIKGVPSRWFAEPRVSSKPSMLVTHTVFST--FGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYN 260 (341)
Q Consensus 183 TI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~--FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~k 260 (341)
||-|+++|-++ +...|..++.. .|+.-=+-+|+|--.+. ..|. |||.|.......+
T Consensus 3 TvMirNIPn~~----------t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~---------N~GY---AFVNf~~~~~~~~ 60 (97)
T PF04059_consen 3 TVMIRNIPNKY----------TQEMLIQILDEHFKGKYDFFYLPIDFKNKC---------NLGY---AFVNFTSPQAAIR 60 (97)
T ss_pred eEEEecCCCCC----------CHHHHHHHHHHhccCcceEEEeeeeccCCC---------ceEE---EEEEcCCHHHHHH
Confidence 89999999999 55666655544 35555556677633322 2388 9999999999999
Q ss_pred HHHHhcCccce
Q 019393 261 TLKVLCGRSMQ 271 (341)
Q Consensus 261 AM~aLrGmKL~ 271 (341)
-++++.|.+|-
T Consensus 61 F~~~f~g~~w~ 71 (97)
T PF04059_consen 61 FYKAFNGKKWP 71 (97)
T ss_pred HHHHHcCCccc
Confidence 99999999994
No 89
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=74.42 E-value=3.5 Score=41.06 Aligned_cols=61 Identities=18% Similarity=0.303 Sum_probs=49.6
Q ss_pred CCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHH
Q 019393 181 PDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYN 260 (341)
Q Consensus 181 PDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~k 260 (341)
-=.|.+.|||..- .|..++.-|++||+|-.+-|+++.-..... |+ +||+|.+.+++-+
T Consensus 97 tkkiFvGG~~~~~----------~e~~~r~yfe~~g~v~~~~~~~d~~~~~~r---------gF---gfv~~~~e~sVdk 154 (311)
T KOG4205|consen 97 TKKIFVGGLPPDT----------TEEDFKDYFEQFGKVADVVIMYDKTTSRPR---------GF---GFVTFDSEDSVDK 154 (311)
T ss_pred eeEEEecCcCCCC----------chHHHhhhhhccceeEeeEEeecccccccc---------cc---eeeEeccccccce
Confidence 3478999999877 788899999999999999999886554432 67 8999999888777
Q ss_pred HHH
Q 019393 261 TLK 263 (341)
Q Consensus 261 AM~ 263 (341)
++.
T Consensus 155 v~~ 157 (311)
T KOG4205|consen 155 VTL 157 (311)
T ss_pred ecc
Confidence 654
No 90
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=73.14 E-value=9.8 Score=34.82 Aligned_cols=71 Identities=23% Similarity=0.462 Sum_probs=53.6
Q ss_pred CeEEEcCCccccccCCCCCCCCcHHH--HHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHH
Q 019393 182 DTIVIKGVPSRWFAEPRVSSKPSMLV--THTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFY 259 (341)
Q Consensus 182 DTI~l~gLP~rWFa~~~~s~kPSE~v--l~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~ 259 (341)
-||++ +|.. .+-+|.|+. +.+-.+.||.|..|- +.|++. |.|-|++-.+.+
T Consensus 87 sTIVV-----RWlk---knm~~~edl~sV~~~Ls~fGpI~SVT-----~cGrqs--------------avVvF~d~~SAC 139 (166)
T PF15023_consen 87 STIVV-----RWLK---KNMQPTEDLKSVIQRLSVFGPIQSVT-----LCGRQS--------------AVVVFKDITSAC 139 (166)
T ss_pred eeEEe-----ehhh---hcCChHHHHHHHHHHHHhcCCcceee-----ecCCce--------------EEEEehhhHHHH
Confidence 37765 6752 267888876 556678999998875 445544 899999999999
Q ss_pred HHHHHhcCccceecCceeEEEEE
Q 019393 260 NTLKVLCGRSMQKQGSQLKADYE 282 (341)
Q Consensus 260 kAM~aLrGmKL~~kGk~l~a~ik 282 (341)
+|+.|+..+.. |.-+.|.-.
T Consensus 140 ~Av~Af~s~~p---gtm~qCsWq 159 (166)
T PF15023_consen 140 KAVSAFQSRAP---GTMFQCSWQ 159 (166)
T ss_pred HHHHhhcCCCC---CceEEeecc
Confidence 99999988543 777777653
No 91
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=71.73 E-value=1.9 Score=42.29 Aligned_cols=80 Identities=14% Similarity=0.228 Sum_probs=59.0
Q ss_pred CCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecC-CCCCCCCCCCCCCCcccceeEEEEEEeccchHH
Q 019393 180 EPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAE-DDDPGKDADEDGGDIISGLHCKIVVQFEKYRDF 258 (341)
Q Consensus 180 RPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~-~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F 258 (341)
.--.|||+++|-.- ...-++.||+.||+|-+|-+.. +|-.++..... |+.-.-++-|+||.|..=...
T Consensus 73 k~GVvylS~IPp~m----------~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~-~~n~~~~y~EGWvEF~~KrvA 141 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYM----------DPVRLREILSQYGEVGRVYLQPEDDSKRAARKRK-GGNYKKLYSEGWVEFISKRVA 141 (278)
T ss_pred cceEEEeccCCCcc----------CHHHHHHHHHhccccceEEecchhhHHHHHHhhc-CCCccccchhHHHHHHHHHHH
Confidence 44689999999876 4456999999999999999965 44434333222 112223445999999998898
Q ss_pred HHHHHHhcCccc
Q 019393 259 YNTLKVLCGRSM 270 (341)
Q Consensus 259 ~kAM~aLrGmKL 270 (341)
-.+.+.|.|.-+
T Consensus 142 K~iAe~Lnn~~I 153 (278)
T KOG3152|consen 142 KRIAELLNNTPI 153 (278)
T ss_pred HHHHHHhCCCcc
Confidence 899999998877
No 92
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=67.03 E-value=8.6 Score=37.36 Aligned_cols=65 Identities=14% Similarity=0.202 Sum_probs=54.0
Q ss_pred eEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHH
Q 019393 183 TIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTL 262 (341)
Q Consensus 183 TI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM 262 (341)
||++.++- ++.+|++|-..|-.=|.|-.|-||..-.... -+ |||-|+.-.+..-||
T Consensus 11 tl~v~n~~----------~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~-----------kF---a~v~f~~E~sv~~a~ 66 (267)
T KOG4454|consen 11 TLLVQNMY----------SGVSEELLSELFIQAGPVYKVGIPSGQDQEQ-----------KF---AYVFFPNENSVQLAG 66 (267)
T ss_pred HHHHHhhh----------hhhhHHHHHHHhhccCceEEEeCCCCccCCC-----------ce---eeeecccccchhhhh
Confidence 67766653 4559999999999999999999998644322 13 999999999999999
Q ss_pred HHhcCccce
Q 019393 263 KVLCGRSMQ 271 (341)
Q Consensus 263 ~aLrGmKL~ 271 (341)
+.+.|-+|.
T Consensus 67 ~L~ng~~l~ 75 (267)
T KOG4454|consen 67 QLENGDDLE 75 (267)
T ss_pred hhcccchhc
Confidence 999999994
No 93
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=62.90 E-value=13 Score=40.42 Aligned_cols=53 Identities=17% Similarity=0.274 Sum_probs=43.0
Q ss_pred HHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHHHHhcCccc
Q 019393 206 LVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTLKVLCGRSM 270 (341)
Q Consensus 206 ~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM~aLrGmKL 270 (341)
.-|+.+|++||+|--.-|... .-+-|-.|=.||.+.--....+|++.|.-..|
T Consensus 420 tDLKnlFSKyGKVvGAKVVTN------------aRsPGaRCYGfVTMSts~eAtkCI~hLHrTEL 472 (940)
T KOG4661|consen 420 TDLKNLFSKYGKVVGAKVVTN------------ARSPGARCYGFVTMSTSAEATKCIEHLHRTEL 472 (940)
T ss_pred hHHHHHHHHhcceeceeeeec------------CCCCCcceeEEEEecchHHHHHHHHHhhhhhh
Confidence 459999999999987776543 11237889999999999999999999876655
No 94
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=61.49 E-value=3.5 Score=41.49 Aligned_cols=62 Identities=24% Similarity=0.383 Sum_probs=45.2
Q ss_pred HHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHHHHhcCccceecCceeEEEEE
Q 019393 210 TVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTLKVLCGRSMQKQGSQLKADYE 282 (341)
Q Consensus 210 ~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM~aLrGmKL~~kGk~l~a~ik 282 (341)
.-|..||+|-.|-+--+ +. .. -..|..|-+||.|++-.++..|++.--|+.+ +|++++|.+.
T Consensus 99 eyfgqygki~ki~~~~~-~S--~~------s~~~~~~s~yITy~~~eda~rci~~v~g~~~--dg~~lka~~g 160 (327)
T KOG2068|consen 99 EYFGQYGKINKIVKNKD-PS--SS------SSSGGTCSVYITYEEEEDADRCIDDVDGFVD--DGRALKASLG 160 (327)
T ss_pred ccccccccceEEeecCC-cc--cc------cCCCCCCcccccccchHhhhhHHHHhhhHHh--hhhhhHHhhC
Confidence 35788999987765443 22 01 1225556699999999999999999999999 8877665444
No 95
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=58.83 E-value=9.1 Score=37.45 Aligned_cols=70 Identities=20% Similarity=0.252 Sum_probs=54.7
Q ss_pred CCCCCeEE-EcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccch
Q 019393 178 KQEPDTIV-IKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYR 256 (341)
Q Consensus 178 geRPDTI~-l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~ 256 (341)
+.-++||+ +.+|+..- .++-+..-|..+|.|.++.+|...+.+..+ |+ +||+|..-.
T Consensus 181 ~~~s~~~~~~~~~~f~~----------~~d~~~~~~~~~~~i~~~r~~~~~~s~~~k---------g~---a~~~~~~~~ 238 (285)
T KOG4210|consen 181 SGPSDTIFFVGELDFSL----------TRDDLKEHFVSSGEITSVRLPTDEESGDSK---------GF---AYVDFSAGN 238 (285)
T ss_pred cCccccceeeccccccc----------chHHHhhhccCcCcceeeccCCCCCccchh---------hh---hhhhhhhch
Confidence 56778888 78887544 556677899999999999999998887755 77 899999888
Q ss_pred HHHHHHHHhcCccc
Q 019393 257 DFYNTLKVLCGRSM 270 (341)
Q Consensus 257 ~F~kAM~aLrGmKL 270 (341)
+-..|+.. -+.+.
T Consensus 239 ~~~~~~~~-~~~~~ 251 (285)
T KOG4210|consen 239 SKKLALND-QTRSI 251 (285)
T ss_pred hHHHHhhc-ccCcc
Confidence 87777775 44433
No 96
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=57.77 E-value=14 Score=37.01 Aligned_cols=81 Identities=19% Similarity=0.324 Sum_probs=59.5
Q ss_pred CCCCC--eEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccc
Q 019393 178 KQEPD--TIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKY 255 (341)
Q Consensus 178 geRPD--TI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey 255 (341)
.|-|| -|.|-+||-.+ ...-|.+.|-.||.|-.-.|=+|.-.-. -.|=.||-|-+.
T Consensus 280 reGPeGCNlFIYHLPQEF----------gDaEliQmF~PFGhivSaKVFvDRATNQ------------SKCFGFVSfDNp 337 (371)
T KOG0146|consen 280 REGPEGCNLFIYHLPQEF----------GDAELIQMFLPFGHIVSAKVFVDRATNQ------------SKCFGFVSFDNP 337 (371)
T ss_pred hcCCCcceEEEEeCchhh----------ccHHHHHHhccccceeeeeeeehhcccc------------ccceeeEecCCc
Confidence 56666 57888888876 2233789999999999888877744322 235589999999
Q ss_pred hHHHHHHHHhcCccceecCceeEEEEE
Q 019393 256 RDFYNTLKVLCGRSMQKQGSQLKADYE 282 (341)
Q Consensus 256 ~~F~kAM~aLrGmKL~~kGk~l~a~ik 282 (341)
.+...|+.+++|--+ .-|+|++-.|
T Consensus 338 ~SaQaAIqAMNGFQI--GMKRLKVQLK 362 (371)
T KOG0146|consen 338 ASAQAAIQAMNGFQI--GMKRLKVQLK 362 (371)
T ss_pred hhHHHHHHHhcchhh--hhhhhhhhhc
Confidence 999999999998655 4455555443
No 97
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=57.33 E-value=15 Score=36.97 Aligned_cols=66 Identities=14% Similarity=0.333 Sum_probs=51.7
Q ss_pred eEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHH
Q 019393 183 TIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTL 262 (341)
Q Consensus 183 TI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM 262 (341)
+||+.|+--+-=+ .=+++-|++||.|-+.||.-+ . +||-|.--.+.+.|+
T Consensus 80 kl~vgNis~tctn----------~ElRa~fe~ygpviecdivkd-----------------y---~fvh~d~~eda~~ai 129 (346)
T KOG0109|consen 80 KLHVGNISPTCTN----------QELRAKFEKYGPVIECDIVKD-----------------Y---AFVHFDRAEDAVEAI 129 (346)
T ss_pred ccccCCCCccccC----------HHHhhhhcccCCceeeeeecc-----------------e---eEEEEeeccchHHHH
Confidence 6788777655411 228999999999999999754 3 889999999999999
Q ss_pred HHhcCccceecCceeEEE
Q 019393 263 KVLCGRSMQKQGSQLKAD 280 (341)
Q Consensus 263 ~aLrGmKL~~kGk~l~a~ 280 (341)
.-|.|... +|+.+.+-
T Consensus 130 r~l~~~~~--~gk~m~vq 145 (346)
T KOG0109|consen 130 RGLDNTEF--QGKRMHVQ 145 (346)
T ss_pred hccccccc--ccceeeee
Confidence 99999887 66665543
No 98
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=54.69 E-value=15 Score=35.84 Aligned_cols=64 Identities=14% Similarity=0.185 Sum_probs=47.9
Q ss_pred CeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHH
Q 019393 182 DTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNT 261 (341)
Q Consensus 182 DTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kA 261 (341)
-|+.|.+|--.- .|+-|+++|+.|--...+.|-.- |--|-|||.|+|......|
T Consensus 211 stlfianl~~~~----------~ed~l~~~~~~~~gf~~l~~~~~----------------~g~~vaf~~~~~~~~at~a 264 (284)
T KOG1457|consen 211 STLFIANLGPNC----------TEDELKQLLSRYPGFHILKIRAR----------------GGMPVAFADFEEIEQATDA 264 (284)
T ss_pred hhHhhhccCCCC----------CHHHHHHHHHhCCCceEEEEecC----------------CCcceEeecHHHHHHHHHH
Confidence 466666665443 78999999999976666655321 2235699999999999999
Q ss_pred HHHhcCccce
Q 019393 262 LKVLCGRSMQ 271 (341)
Q Consensus 262 M~aLrGmKL~ 271 (341)
|..|.|--|-
T Consensus 265 m~~lqg~~~s 274 (284)
T KOG1457|consen 265 MNHLQGNLLS 274 (284)
T ss_pred HHHhhcceec
Confidence 9999997764
No 99
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=54.06 E-value=32 Score=38.37 Aligned_cols=85 Identities=16% Similarity=0.231 Sum_probs=60.7
Q ss_pred eEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecC--CCCCCCCCCCCCCCcccceeEEEEEEeccchHHHH
Q 019393 183 TIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAE--DDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYN 260 (341)
Q Consensus 183 TI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~--~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~k 260 (341)
-+|+.+|+-+= +|..|-..|..||.|..|-|-= .+. .+.. +=+| +||-|++-.+..+
T Consensus 176 Nlyv~Nlnpsv----------~E~~ll~tfGrfgPlasvKimwpRtEe-Ek~r---------~r~c-gfvafmnR~D~er 234 (877)
T KOG0151|consen 176 NLYVGNLNPSV----------DENFLLRTFGRFGPLASVKIMWPRTEE-EKRR---------ERNC-GFVAFMNRADAER 234 (877)
T ss_pred ceeeecCCccc----------cHHHHHHHhcccCcccceeeecccchh-hhcc---------cccc-ceeeehhhhhHHH
Confidence 47888887655 8999999999999999999843 211 1111 1222 8999999999999
Q ss_pred HHHHhcCccceecCceeEEEEEEeecccCCCccc
Q 019393 261 TLKVLCGRSMQKQGSQLKADYEVTWDKDGFFWDS 294 (341)
Q Consensus 261 AM~aLrGmKL~~kGk~l~a~ikV~fD~tkhlS~~ 294 (341)
||+.|+|.-.|. -.+|..|-+.=.|-+-
T Consensus 235 a~k~lqg~iv~~------~e~K~gWgk~V~ip~~ 262 (877)
T KOG0151|consen 235 ALKELQGIIVME------YEMKLGWGKAVPIPNI 262 (877)
T ss_pred HHHHhcceeeee------eeeeeccccccccCCc
Confidence 999999988865 3445555554444433
No 100
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=53.86 E-value=35 Score=36.42 Aligned_cols=60 Identities=15% Similarity=0.292 Sum_probs=47.4
Q ss_pred eEEEcCCccccccCCCCCCCCcHHHHHHHhh-ccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHH
Q 019393 183 TIVIKGVPSRWFAEPRVSSKPSMLVTHTVFS-TFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNT 261 (341)
Q Consensus 183 TI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe-~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kA 261 (341)
||.|.|||=-= .-..|..||+ -||.|-.|-|=.|..|.=-. |- +=|.|.++.+|++|
T Consensus 372 TVFVGgvprpl----------~A~eLA~imd~lyGgV~yaGIDtD~k~KYPk---------Ga---GRVtFsnqqsYi~A 429 (520)
T KOG0129|consen 372 TVFVGGLPRPL----------TAEELAMIMEDLFGGVLYVGIDTDPKLKYPK---------GA---GRVTFSNQQAYIKA 429 (520)
T ss_pred eEEecCCCCcc----------hHHHHHHHHHHhcCceEEEEeccCcccCCCC---------Cc---ceeeecccHHHHHH
Confidence 99999999655 4456999999 99999999998874442111 22 66899999999999
Q ss_pred HHH
Q 019393 262 LKV 264 (341)
Q Consensus 262 M~a 264 (341)
+.|
T Consensus 430 Isa 432 (520)
T KOG0129|consen 430 ISA 432 (520)
T ss_pred Hhh
Confidence 986
No 101
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=53.72 E-value=29 Score=36.94 Aligned_cols=61 Identities=16% Similarity=0.218 Sum_probs=43.8
Q ss_pred CeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceee-eeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHH
Q 019393 182 DTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRN-LNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYN 260 (341)
Q Consensus 182 DTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRn-vDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~k 260 (341)
-+|-|+|||..- ++.-+.+-|+-.=-|.+ +-.||+ +.++. .=||||||+.-....+
T Consensus 104 ~vVRLRGLPfsc----------te~dI~~FFaGL~Iv~~gi~l~~d-~rgR~------------tGEAfVqF~sqe~ae~ 160 (510)
T KOG4211|consen 104 GVVRLRGLPFSC----------TEEDIVEFFAGLEIVPDGILLPMD-QRGRP------------TGEAFVQFESQESAEI 160 (510)
T ss_pred ceEEecCCCccC----------cHHHHHHHhcCCcccccceeeecc-CCCCc------------ccceEEEecCHHHHHH
Confidence 378899999655 77788899998877777 223433 33331 1269999999999999
Q ss_pred HHHHh
Q 019393 261 TLKVL 265 (341)
Q Consensus 261 AM~aL 265 (341)
||.--
T Consensus 161 Al~rh 165 (510)
T KOG4211|consen 161 ALGRH 165 (510)
T ss_pred HHHHH
Confidence 98643
No 102
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=46.35 E-value=26 Score=34.66 Aligned_cols=67 Identities=21% Similarity=0.323 Sum_probs=45.4
Q ss_pred cccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHHHHhcCccc
Q 019393 191 SRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTLKVLCGRSM 270 (341)
Q Consensus 191 ~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM~aLrGmKL 270 (341)
.|=||..= +.--+-+++.++|.+|-.--.-.+.-+-=.++ +-|. .||-|.+..||+.||..+.|.=.
T Consensus 191 fRIfcgdl-gNevnd~vl~raf~Kfpsf~~akviRdkRTgK---------Skgy---gfVSf~~pad~~rAmrem~gkyV 257 (290)
T KOG0226|consen 191 FRIFCGDL-GNEVNDDVLARAFKKFPSFQKAKVIRDKRTGK---------SKGY---GFVSFRDPADYVRAMREMNGKYV 257 (290)
T ss_pred ceeecccc-cccccHHHHHHHHHhccchhhccccccccccc---------cccc---eeeeecCHHHHHHHHHhhccccc
Confidence 34455322 23347899999999996544444433333333 3377 89999999999999999988643
No 103
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=45.06 E-value=80 Score=32.57 Aligned_cols=79 Identities=22% Similarity=0.390 Sum_probs=57.2
Q ss_pred CCCCeEEEcCCccccccCCCCCCCCcHHHH-------HHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEE
Q 019393 179 QEPDTIVIKGVPSRWFAEPRVSSKPSMLVT-------HTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQ 251 (341)
Q Consensus 179 eRPDTI~l~gLP~rWFa~~~~s~kPSE~vl-------~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQ 251 (341)
.-+=||+|.+| |..-. ..+ .++++ ..==++||.||+|-|=.--|- |. |=|-
T Consensus 263 r~~~tVi~kn~----Ftp~~-~~~-~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPd-------------Gv---vtV~ 320 (382)
T KOG1548|consen 263 RADRTVILKNM----FTPED-FEK-NPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPD-------------GV---VTVS 320 (382)
T ss_pred cCCcEEEeeec----CCHHH-hcc-CHHHHHHHHHHHHHHHHHhCCcceEEEeccCCC-------------ce---eEEE
Confidence 34457888887 44211 111 22333 344789999999988554454 44 8899
Q ss_pred eccchHHHHHHHHhcCccceecCceeEEEE
Q 019393 252 FEKYRDFYNTLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 252 y~ey~~F~kAM~aLrGmKL~~kGk~l~a~i 281 (341)
|..-.....|+++|.|+=. +|+.+.|.|
T Consensus 321 f~n~eeA~~ciq~m~GR~f--dgRql~A~i 348 (382)
T KOG1548|consen 321 FRNNEEADQCIQTMDGRWF--DGRQLTASI 348 (382)
T ss_pred eCChHHHHHHHHHhcCeee--cceEEEEEE
Confidence 9999999999999999987 999999987
No 104
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=39.25 E-value=88 Score=33.46 Aligned_cols=62 Identities=23% Similarity=0.301 Sum_probs=48.0
Q ss_pred CCCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCC--CCCCCCCCCCCCcccceeEEEEEEeccc
Q 019393 178 KQEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDD--DPGKDADEDGGDIISGLHCKIVVQFEKY 255 (341)
Q Consensus 178 geRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~D--pyr~~~~~~~g~~~~gL~feayVQy~ey 255 (341)
+.++=-|-|+|||..- +|.-++.-|+--+ |.|+-||-.+ |. | ||||.|..=
T Consensus 7 ~~~~~~vr~rGLPwsa----------t~~ei~~Ff~~~~-I~~~~~~r~~Gr~s-------------G---eA~Ve~~se 59 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSA----------TEKEILDFFSNCG-IENLEIPRRNGRPS-------------G---EAYVEFTSE 59 (510)
T ss_pred CCcceEEEecCCCccc----------cHHHHHHHHhcCc-eeEEEEeccCCCcC-------------c---ceEEEeech
Confidence 6778889999999554 7777888887764 7888777653 22 2 499999999
Q ss_pred hHHHHHHHHhc
Q 019393 256 RDFYNTLKVLC 266 (341)
Q Consensus 256 ~~F~kAM~aLr 266 (341)
.+.-+||+.=|
T Consensus 60 edv~~AlkkdR 70 (510)
T KOG4211|consen 60 EDVEKALKKDR 70 (510)
T ss_pred HHHHHHHHhhH
Confidence 99999997644
No 105
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=37.90 E-value=1.3e+02 Score=32.22 Aligned_cols=75 Identities=21% Similarity=0.418 Sum_probs=55.6
Q ss_pred CCCCCeEEEcCCcc--ccccCCCCCCCCcHHHHHHH-hhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEecc
Q 019393 178 KQEPDTIVIKGVPS--RWFAEPRVSSKPSMLVTHTV-FSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEK 254 (341)
Q Consensus 178 geRPDTI~l~gLP~--rWFa~~~~s~kPSE~vl~~v-Fe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~e 254 (341)
..|--.++|+++|. ||-. |+.+ =++-|+|.-|.+-+| ..+|.. |- |.|.|+.
T Consensus 41 ~~r~R~vfItNIpyd~rWqd------------LKdLvrekvGev~yveLl~D-~~GK~r---------Gc---avVEFk~ 95 (608)
T KOG4212|consen 41 AARDRSVFITNIPYDYRWQD------------LKDLVREKVGEVEYVELLFD-ESGKAR---------GC---AVVEFKD 95 (608)
T ss_pred ccccceEEEecCcchhhhHh------------HHHHHHHhcCceEeeeeecc-cCCCcC---------Cc---eEEEeeC
Confidence 35555699999995 7822 4443 378899999999887 445533 55 9999999
Q ss_pred chHHHHHHHHhcCccceecCceeEE
Q 019393 255 YRDFYNTLKVLCGRSMQKQGSQLKA 279 (341)
Q Consensus 255 y~~F~kAM~aLrGmKL~~kGk~l~a 279 (341)
..+..||.+.|.-..| +|+.|.+
T Consensus 96 ~E~~qKa~E~lnk~~~--~GR~l~v 118 (608)
T KOG4212|consen 96 PENVQKALEKLNKYEV--NGRELVV 118 (608)
T ss_pred HHHHHHHHHHhhhccc--cCceEEE
Confidence 9999999999876665 5665543
No 106
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=37.32 E-value=72 Score=32.42 Aligned_cols=63 Identities=22% Similarity=0.342 Sum_probs=46.1
Q ss_pred HHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHHHHhcCccceecCceeE-EEEEE
Q 019393 208 THTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTLKVLCGRSMQKQGSQLK-ADYEV 283 (341)
Q Consensus 208 l~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM~aLrGmKL~~kGk~l~-a~ikV 283 (341)
++.=.++||+|-||-|=.. |.... +=..-+||||+.-.+..+|.=-|.|+=. .|+... |-|.+
T Consensus 303 ~keEceKyg~V~~viifei-p~~p~----------deavRiFveF~r~e~aiKA~VdlnGRyF--GGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 303 TKEECEKYGKVGNVIIFEI-PSQPE----------DEAVRIFVEFERVESAIKAVVDLNGRYF--GGRVVSACFYNL 366 (378)
T ss_pred HHHHHHhhcceeeEEEEec-CCCcc----------chhheeeeeeccHHHHHHHHHhcCCcee--cceeeeheeccH
Confidence 5566899999999988665 32221 1123489999999999999999999976 787655 54443
No 107
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=33.98 E-value=26 Score=29.44 Aligned_cols=40 Identities=18% Similarity=0.199 Sum_probs=33.8
Q ss_pred CCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCC
Q 019393 179 QEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDD 227 (341)
Q Consensus 179 eRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~D 227 (341)
..|=-|.|.|||..+. +++++.+|-+.+|++-.+|.-...
T Consensus 102 ~~~vWVri~glP~~~~---------~~~~~~~i~~~iG~~i~vD~~t~~ 141 (153)
T PF14111_consen 102 HIPVWVRIYGLPLHLW---------SEEILKAIGSKIGEPIEVDENTLK 141 (153)
T ss_pred ccchhhhhccCCHHHh---------hhHHHHHHHHhcCCeEEEEcCCCC
Confidence 4666799999999841 788999999999999999977654
No 108
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=33.24 E-value=45 Score=33.34 Aligned_cols=61 Identities=20% Similarity=0.234 Sum_probs=43.3
Q ss_pred CeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHH
Q 019393 182 DTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNT 261 (341)
Q Consensus 182 DTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kA 261 (341)
=++.|.||+..- +|+.|+.=|+.||+|..+-|-.+ |.-. -..|+ .||+|.+-.+...+
T Consensus 7 ~KlfiGgisw~t----------tee~Lr~yf~~~Gev~d~~vm~d-~~t~--------rsrgF---gfv~f~~~~~v~~v 64 (311)
T KOG4205|consen 7 GKLFIGGLSWET----------TEESLREYFSQFGEVTDCVVMRD-PSTG--------RSRGF---GFVTFATPEGVDAV 64 (311)
T ss_pred cceeecCcCccc----------cHHHHHHHhcccCceeeEEEecc-CCCC--------Ccccc---cceecCCCcchhee
Confidence 356777776544 89999999999999999877544 4321 12366 78888877776666
Q ss_pred HHH
Q 019393 262 LKV 264 (341)
Q Consensus 262 M~a 264 (341)
|.+
T Consensus 65 l~~ 67 (311)
T KOG4205|consen 65 LNA 67 (311)
T ss_pred ecc
Confidence 655
No 109
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=30.80 E-value=41 Score=32.97 Aligned_cols=24 Identities=13% Similarity=0.169 Sum_probs=22.7
Q ss_pred EEEEeccchHHHHHHHHhcCccce
Q 019393 248 IVVQFEKYRDFYNTLKVLCGRSMQ 271 (341)
Q Consensus 248 ayVQy~ey~~F~kAM~aLrGmKL~ 271 (341)
|||.|-.....+.||++|.||+.=
T Consensus 80 aFatF~s~q~A~aamnaLNGvrFD 103 (284)
T KOG1457|consen 80 AFATFTSHQFALAAMNALNGVRFD 103 (284)
T ss_pred EEEEecchHHHHHHHHHhcCeeec
Confidence 999999999999999999999873
No 110
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=29.10 E-value=46 Score=31.80 Aligned_cols=60 Identities=23% Similarity=0.401 Sum_probs=46.0
Q ss_pred EEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHHH
Q 019393 184 IVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTLK 263 (341)
Q Consensus 184 I~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM~ 263 (341)
+|+..||- .+.+.-+...|..||+|..|++- .|+ +||-|+...+.-.|+.
T Consensus 4 v~vg~~~~----------~~~~~d~E~~f~~yg~~~d~~mk-----------------~gf---~fv~fed~rda~Dav~ 53 (216)
T KOG0106|consen 4 VYIGRLPY----------RARERDVERFFKGYGKIPDADMK-----------------NGF---GFVEFEDPRDADDAVH 53 (216)
T ss_pred eeecccCC----------ccchhHHHHHHhhccccccceee-----------------ccc---ceeccCchhhhhcccc
Confidence 56666663 33777899999999999887642 144 5888999999999999
Q ss_pred HhcCccceec
Q 019393 264 VLCGRSMQKQ 273 (341)
Q Consensus 264 aLrGmKL~~k 273 (341)
.|.|.-|...
T Consensus 54 ~l~~~~l~~e 63 (216)
T KOG0106|consen 54 DLDGKELCGE 63 (216)
T ss_pred hhcCceecce
Confidence 9999888543
No 111
>PF11736 DUF3299: Protein of unknown function (DUF3299); InterPro: IPR021727 This is a family of bacterial proteins of unknown function.
Probab=28.23 E-value=31 Score=30.84 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=20.3
Q ss_pred HHHHhhccCeeEEecCccceeE
Q 019393 126 KYIVEKMDGIELNLEGVKYKLS 147 (341)
Q Consensus 126 ~~l~~kLdG~~lkLsGf~~~Lk 147 (341)
..++..|||+.++|.||--+|.
T Consensus 47 ~~~v~~L~Gk~V~i~Gf~vPle 68 (146)
T PF11736_consen 47 APVVKALDGKQVRIPGFMVPLE 68 (146)
T ss_pred cchhHHhCCCEEEEeeEEEeec
Confidence 5678999999999999999998
No 112
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=25.94 E-value=1.9e+02 Score=26.31 Aligned_cols=82 Identities=12% Similarity=0.111 Sum_probs=46.9
Q ss_pred CCeEEEcCCccccccCCCCCCCCcHHHHHHHhhc-cCce---eeee-ecCCCCCCCCCCCCCCCcccceeEEEEEEeccc
Q 019393 181 PDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFST-FGKI---RNLN-VAEDDDPGKDADEDGGDIISGLHCKIVVQFEKY 255 (341)
Q Consensus 181 PDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~-FGkI---RnvD-IP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey 255 (341)
.-.|+|+.||..= .|+.+....+. +|.- ..+. .....++ ..+.+.-|||.|...
T Consensus 7 ~~KvVIR~LPP~L----------teeeF~~~i~~~l~~~~~w~y~~g~~~~~~~-----------~~~~~SRaYi~F~~~ 65 (176)
T PF03467_consen 7 GTKVVIRRLPPNL----------TEEEFWEQISPWLPDEWDWYYFQGKYGKKSF-----------KPPTYSRAYINFKNP 65 (176)
T ss_dssp --EEEEEEE-TTS-----------HHHHCCCCSS--SSE---EEEEEEES-SSS-----------TTS--EEEEEEESSC
T ss_pred CceEEEeCCCCCC----------CHHHHHHHhhhhcccccceEEEecCCCCccC-----------CCCcceEEEEEeCCH
Confidence 3489999999776 55555554444 5544 1111 0111122 124556799999999
Q ss_pred hHHHHHHHHhcCccceec-CceeEEEEEE
Q 019393 256 RDFYNTLKVLCGRSMQKQ-GSQLKADYEV 283 (341)
Q Consensus 256 ~~F~kAM~aLrGmKL~~k-Gk~l~a~ikV 283 (341)
.+...=++.++|...+-. |....|.++.
T Consensus 66 ~~~~~F~~~~~g~~F~D~kg~~~~~~VE~ 94 (176)
T PF03467_consen 66 EDLLEFRDRFDGHVFVDSKGNEYPAVVEF 94 (176)
T ss_dssp HHHHHHHHHCTTEEEE-TTS-EEEEEEEE
T ss_pred HHHHHHHHhcCCcEEECCCCCCcceeEEE
Confidence 999999999999988653 6555555543
No 113
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=24.21 E-value=1.6e+02 Score=24.74 Aligned_cols=53 Identities=17% Similarity=0.117 Sum_probs=26.9
Q ss_pred cHHHHHHHhhccCceeeee-ecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHH
Q 019393 204 SMLVTHTVFSTFGKIRNLN-VAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTL 262 (341)
Q Consensus 204 SE~vl~~vFe~FGkIRnvD-IP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM 262 (341)
.-..+.+-|++||.|-... +.- +..+-.. ....-...- ..|+|..-.+..+|+
T Consensus 18 ~~~~Vl~~F~~~G~Ile~~~~~~-~~~~~~~--~~~~~~~NW---i~I~Y~~~~~A~rAL 71 (100)
T PF05172_consen 18 ASNQVLRHFSSFGTILEHFEVLR-SSSGINP--YPIPSGGNW---IHITYDNPLSAQRAL 71 (100)
T ss_dssp GHHHHHHHHHCCS-EECEEGGG-------------E-CCTTE---EEEEESSHHHHHHHH
T ss_pred HHHHHHHHHHhcceEEEeecccc-ccccccc--ccCCCCCCE---EEEECCCHHHHHHHH
Confidence 3456888999999985542 211 1000000 000001123 789999888877775
Done!