Query 019393
Match_columns 341
No_of_seqs 93 out of 95
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 15:23:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019393.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019393hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.1 3.1E-10 1E-14 90.0 8.2 76 182-281 20-95 (99)
2 3mdf_A Peptidyl-prolyl CIS-tra 99.0 5.5E-10 1.9E-14 83.8 8.2 78 180-281 6-83 (85)
3 2lkz_A RNA-binding protein 5; 99.0 8.4E-10 2.9E-14 87.8 9.0 82 178-281 6-91 (95)
4 3ns6_A Eukaryotic translation 99.0 4.8E-10 1.7E-14 88.3 7.4 76 182-281 7-89 (100)
5 4a8x_A RNA-binding protein wit 99.0 7.6E-10 2.6E-14 83.3 8.0 80 179-281 2-81 (88)
6 2dnz_A Probable RNA-binding pr 99.0 1.9E-09 6.6E-14 82.5 10.4 78 179-280 3-80 (95)
7 2e5h_A Zinc finger CCHC-type a 99.0 1.1E-09 3.7E-14 83.8 8.9 79 179-281 14-92 (94)
8 1p27_B RNA-binding protein 8A; 99.0 1.1E-09 3.9E-14 85.6 8.9 76 182-281 24-99 (106)
9 2div_A TRNA selenocysteine ass 99.0 1.1E-09 3.8E-14 84.7 8.6 89 178-290 6-95 (99)
10 3bs9_A Nucleolysin TIA-1 isofo 99.0 1.2E-09 4E-14 82.3 8.4 76 182-281 7-82 (87)
11 3md1_A Nuclear and cytoplasmic 99.0 1.3E-09 4.3E-14 81.4 8.2 74 183-280 3-76 (83)
12 1whw_A Hypothetical protein ri 99.0 2E-09 6.9E-14 83.2 9.4 78 179-280 6-83 (99)
13 3s8s_A Histone-lysine N-methyl 99.0 1.2E-09 4.2E-14 88.3 8.5 79 181-287 6-84 (110)
14 2lxi_A RNA-binding protein 10; 99.0 7.1E-10 2.4E-14 86.3 6.6 75 182-280 2-78 (91)
15 2x1f_A MRNA 3'-END-processing 99.0 2.2E-09 7.7E-14 82.9 9.3 79 182-288 3-81 (96)
16 2cqc_A Arginine/serine-rich sp 99.0 1.2E-09 4E-14 83.5 7.6 80 181-288 15-94 (95)
17 1x5s_A Cold-inducible RNA-bind 99.0 2.7E-09 9.1E-14 82.9 9.6 80 178-281 9-88 (102)
18 2dnm_A SRP46 splicing factor; 99.0 3.3E-09 1.1E-13 82.8 9.8 79 178-280 10-88 (103)
19 2cqb_A Peptidyl-prolyl CIS-tra 99.0 1.8E-09 6.1E-14 83.9 8.2 84 179-290 10-93 (102)
20 2fy1_A RNA-binding motif prote 99.0 2.9E-09 9.9E-14 86.2 9.7 82 178-288 4-85 (116)
21 1oo0_B CG8781-PA, drosophila Y 99.0 3.3E-09 1.1E-13 83.7 9.5 77 181-281 26-102 (110)
22 1x5t_A Splicing factor 3B subu 98.9 2.1E-09 7.1E-14 82.5 8.0 77 181-281 5-82 (96)
23 1x5u_A Splicing factor 3B subu 98.9 5.5E-09 1.9E-13 81.6 10.6 79 178-280 12-90 (105)
24 2ywk_A Putative RNA-binding pr 98.9 2E-09 6.9E-14 82.4 7.8 81 179-288 14-94 (95)
25 1x4h_A RNA-binding protein 28; 98.9 6.5E-09 2.2E-13 81.7 10.6 82 179-288 13-100 (111)
26 3ex7_B RNA-binding protein 8A; 98.9 3.9E-09 1.3E-13 85.1 9.5 76 182-281 23-98 (126)
27 2cph_A RNA binding motif prote 98.9 6.3E-09 2.1E-13 81.3 10.1 80 178-281 12-93 (107)
28 2dgx_A KIAA0430 protein; RRM d 98.9 3.8E-09 1.3E-13 82.1 8.8 72 182-280 10-85 (96)
29 2la6_A RNA-binding protein FUS 98.9 3.1E-09 1.1E-13 82.5 8.2 80 178-281 10-97 (99)
30 4f25_A Polyadenylate-binding p 98.9 2E-09 7E-14 86.6 7.4 73 182-280 6-78 (115)
31 2dgo_A Cytotoxic granule-assoc 98.9 3.1E-09 1.1E-13 84.5 8.2 83 179-289 13-95 (115)
32 3ucg_A Polyadenylate-binding p 98.9 4.1E-09 1.4E-13 79.6 8.5 74 182-280 7-80 (89)
33 2krb_A Eukaryotic translation 98.9 1.5E-09 5.3E-14 81.6 6.0 75 183-279 3-80 (81)
34 2dgp_A Bruno-like 4, RNA bindi 98.9 4.6E-09 1.6E-13 82.1 8.8 80 179-280 11-91 (106)
35 2dgs_A DAZ-associated protein 98.9 8.9E-09 3.1E-13 79.7 10.2 78 178-280 7-84 (99)
36 2khc_A Testis-specific RNP-typ 98.9 4.3E-09 1.5E-13 84.0 8.6 79 179-281 38-116 (118)
37 3ulh_A THO complex subunit 4; 98.9 4.9E-09 1.7E-13 82.1 8.7 79 178-281 26-104 (107)
38 2do4_A Squamous cell carcinoma 98.9 5.6E-09 1.9E-13 81.0 8.9 78 178-280 14-91 (100)
39 2cq4_A RNA binding motif prote 98.9 6.5E-09 2.2E-13 82.6 9.4 74 182-280 26-99 (114)
40 2cqi_A Nucleolysin TIAR; RNA r 98.9 1.2E-08 4.2E-13 79.5 10.7 81 178-288 12-92 (103)
41 3p5t_L Cleavage and polyadenyl 98.9 1.5E-09 5.1E-14 83.4 5.4 75 183-281 3-79 (90)
42 2d9p_A Polyadenylate-binding p 98.9 3.5E-09 1.2E-13 82.6 7.6 78 178-281 12-89 (103)
43 2cpz_A CUG triplet repeat RNA- 98.9 2.9E-09 1E-13 84.8 7.2 81 180-288 24-104 (115)
44 1x4e_A RNA binding motif, sing 98.9 1.9E-09 6.5E-14 81.2 5.7 75 179-277 3-77 (85)
45 2ek1_A RNA-binding protein 12; 98.9 1.6E-09 5.4E-14 83.0 5.4 78 179-280 13-90 (95)
46 2cq0_A Eukaryotic translation 98.9 2.9E-09 1E-13 83.0 7.0 79 178-280 12-90 (103)
47 3r27_A HnRNP L, heterogeneous 98.9 6.9E-09 2.4E-13 84.5 9.3 79 182-292 22-100 (100)
48 1p1t_A Cleavage stimulation fa 98.9 2.8E-09 9.7E-14 82.9 6.7 76 181-280 8-83 (104)
49 2nlw_A Eukaryotic translation 98.9 5E-09 1.7E-13 82.9 8.0 83 181-285 15-100 (105)
50 2cq3_A RNA-binding protein 9; 98.9 1.6E-08 5.6E-13 78.8 10.7 85 178-292 12-96 (103)
51 2kt5_A RNA and export factor-b 98.9 6.4E-09 2.2E-13 84.0 8.6 78 179-281 33-110 (124)
52 2jrs_A RNA-binding protein 39; 98.9 5E-09 1.7E-13 83.8 7.8 79 178-280 23-101 (108)
53 1uaw_A Mouse-musashi-1; RNP-ty 98.9 5.3E-09 1.8E-13 77.0 7.3 74 183-281 2-75 (77)
54 2cpi_A CCR4-NOT transcription 98.9 3.4E-09 1.2E-13 84.7 6.5 88 179-291 13-103 (111)
55 2cqp_A RNA-binding protein 12; 98.9 3E-09 1E-13 82.1 6.0 80 178-281 12-91 (98)
56 1iqt_A AUF1, heterogeneous nuc 98.9 5.7E-09 2E-13 76.6 7.2 73 183-280 1-73 (75)
57 1x4d_A Matrin 3; structural ge 98.9 5.2E-09 1.8E-13 84.8 7.5 72 182-281 16-88 (102)
58 1s79_A Lupus LA protein; RRM, 98.8 2E-09 6.7E-14 86.3 4.9 81 180-286 10-90 (103)
59 1wex_A Hypothetical protein (r 98.8 7.4E-09 2.5E-13 83.5 8.2 78 182-291 16-93 (104)
60 2dnh_A Bruno-like 5, RNA bindi 98.8 1.1E-08 3.9E-13 79.7 9.0 77 178-279 12-91 (105)
61 2ku7_A MLL1 PHD3-CYP33 RRM chi 98.8 8.1E-09 2.8E-13 83.9 8.4 79 178-280 60-138 (140)
62 2cpf_A RNA binding motif prote 98.8 4.4E-09 1.5E-13 81.2 6.3 85 180-289 4-88 (98)
63 2dnq_A RNA-binding protein 4B; 98.8 9.5E-09 3.3E-13 78.5 8.1 75 178-288 5-79 (90)
64 2cpe_A RNA-binding protein EWS 98.8 8.8E-09 3E-13 81.6 8.1 82 179-288 13-102 (113)
65 3s7r_A Heterogeneous nuclear r 98.8 1.3E-08 4.5E-13 76.8 8.6 78 178-280 8-85 (87)
66 2mss_A Protein (musashi1); RNA 98.8 8E-09 2.7E-13 76.0 7.1 73 183-280 1-73 (75)
67 1wi8_A EIF-4B, eukaryotic tran 98.8 1.4E-08 4.6E-13 79.6 8.9 78 178-281 12-90 (104)
68 1x4c_A Splicing factor, argini 98.8 1.2E-08 4E-13 81.0 8.5 80 179-289 13-93 (108)
69 1rk8_A CG8781-PA, CG8781-PA pr 98.8 9.3E-09 3.2E-13 87.4 8.5 75 182-280 73-147 (165)
70 2dgv_A HnRNP M, heterogeneous 98.8 1.4E-08 4.9E-13 77.2 8.6 76 178-279 5-80 (92)
71 3lqv_A PRE-mRNA branch site pr 98.8 2E-08 6.8E-13 79.8 9.7 76 179-281 6-81 (115)
72 2m2b_A RNA-binding protein 10; 98.8 1.1E-08 3.6E-13 84.0 8.3 79 178-281 20-104 (131)
73 2hvz_A Splicing factor, argini 98.8 9.1E-09 3.1E-13 80.0 7.2 74 183-289 2-75 (101)
74 2do0_A HnRNP M, heterogeneous 98.8 2.1E-08 7.3E-13 79.3 9.4 78 179-281 13-90 (114)
75 2ki2_A SS-DNA binding protein 98.8 4.5E-09 1.5E-13 79.9 5.3 74 183-281 3-76 (90)
76 2dis_A Unnamed protein product 98.8 1.4E-08 4.7E-13 79.8 8.2 76 181-280 8-87 (109)
77 2e44_A Insulin-like growth fac 98.8 2.1E-08 7E-13 77.1 9.0 76 178-281 12-88 (96)
78 2kxn_B Transformer-2 protein h 98.8 8.6E-09 2.9E-13 85.4 7.3 77 180-280 45-121 (129)
79 1u6f_A Tcubp1, RNA-binding pro 98.8 1.4E-08 4.7E-13 83.2 8.4 84 179-290 40-123 (139)
80 3beg_B Splicing factor, argini 98.8 7.5E-09 2.6E-13 83.5 6.7 78 180-288 15-93 (115)
81 2cqd_A RNA-binding region cont 98.8 1.4E-08 4.7E-13 81.0 8.1 79 178-281 14-92 (116)
82 2kn4_A Immunoglobulin G-bindin 98.8 1.7E-08 5.8E-13 84.2 9.0 79 179-281 68-146 (158)
83 1whx_A Hypothetical protein ri 98.8 1.9E-08 6.3E-13 80.9 8.9 78 182-293 11-88 (111)
84 1h2v_Z 20 kDa nuclear CAP bind 98.8 1.7E-08 5.7E-13 84.6 8.8 80 179-282 37-116 (156)
85 1why_A Hypothetical protein ri 98.8 2.3E-08 7.9E-13 77.3 8.8 74 180-281 16-89 (97)
86 2err_A Ataxin-2-binding protei 98.8 2.4E-08 8.3E-13 79.6 9.1 78 178-281 26-103 (109)
87 1x4g_A Nucleolysin TIAR; struc 98.8 1.4E-08 4.9E-13 80.2 7.7 76 180-289 24-99 (109)
88 2xnq_A Nuclear polyadenylated 98.8 2.3E-08 8E-13 78.3 8.8 68 181-280 22-90 (97)
89 2cq1_A PTB-like protein L; RRM 98.8 1.7E-08 5.7E-13 81.2 7.9 80 182-293 16-95 (101)
90 1sjq_A Polypyrimidine tract-bi 98.8 1.2E-08 3.9E-13 83.8 7.0 84 179-294 14-97 (105)
91 2dgt_A RNA-binding protein 30; 98.8 2.2E-08 7.4E-13 76.8 8.1 76 178-289 7-82 (92)
92 2cpj_A Non-POU domain-containi 98.8 2E-08 7E-13 77.9 8.0 73 179-281 13-85 (99)
93 2dhg_A TRNA selenocysteine ass 98.8 9.6E-09 3.3E-13 80.0 5.8 74 180-278 8-83 (104)
94 3md3_A Nuclear and cytoplasmic 98.7 2.3E-08 8E-13 81.4 8.2 108 127-281 56-163 (166)
95 2lea_A Serine/arginine-rich sp 98.7 1.5E-08 5.1E-13 84.4 7.1 76 181-280 47-122 (135)
96 2j76_E EIF-4B, EIF4B, eukaryot 98.7 1.7E-08 5.9E-13 79.0 7.1 78 178-281 16-94 (100)
97 2ytc_A PRE-mRNA-splicing facto 98.7 3.1E-08 1.1E-12 74.3 8.2 72 179-280 10-82 (85)
98 2kvi_A Nuclear polyadenylated 98.7 2.5E-08 8.6E-13 77.3 7.8 71 180-282 9-80 (96)
99 2rs2_A Musashi-1, RNA-binding 98.7 3.2E-08 1.1E-12 79.1 8.6 79 178-281 22-100 (109)
100 2yh0_A Splicing factor U2AF 65 98.7 7.5E-08 2.6E-12 81.2 11.3 79 179-281 112-190 (198)
101 2g4b_A Splicing factor U2AF 65 98.7 2.9E-08 9.8E-13 82.0 8.2 78 180-281 93-170 (172)
102 2jvr_A Nucleolar protein 3; RN 98.7 2.8E-08 9.6E-13 81.4 8.0 77 179-287 26-103 (111)
103 1x4a_A Splicing factor, argini 98.7 5.5E-08 1.9E-12 76.7 9.5 79 179-288 20-98 (109)
104 2dnp_A RNA-binding protein 14; 98.7 5.7E-08 2E-12 74.1 9.3 71 179-281 7-77 (90)
105 2dgu_A Heterogeneous nuclear r 98.7 3.1E-08 1.1E-12 77.6 7.9 74 180-289 10-83 (103)
106 1x4b_A Heterogeneous nuclear r 98.7 2.4E-08 8.1E-13 79.6 7.3 75 181-280 27-101 (116)
107 2jvo_A Nucleolar protein 3; nu 98.7 2.5E-08 8.5E-13 79.9 7.5 70 178-279 28-97 (108)
108 2jwn_A Embryonic polyadenylate 98.7 1.8E-08 6.1E-13 81.0 6.6 74 182-280 37-110 (124)
109 1x5o_A RNA binding motif, sing 98.7 4.1E-08 1.4E-12 77.8 8.5 69 179-270 23-91 (114)
110 2dh8_A DAZ-associated protein 98.7 1.3E-08 4.5E-13 79.6 5.5 76 178-278 13-88 (105)
111 2la4_A Nuclear and cytoplasmic 98.7 1.8E-08 6.1E-13 78.3 6.3 67 182-278 28-94 (101)
112 2dng_A Eukaryotic translation 98.7 4.8E-08 1.6E-12 76.3 8.6 78 178-281 12-89 (103)
113 1fxl_A Paraneoplastic encephal 98.7 3.7E-08 1.3E-12 80.3 8.2 75 182-280 3-77 (167)
114 2e5j_A Methenyltetrahydrofolat 98.7 3.5E-08 1.2E-12 76.5 7.7 75 178-281 16-90 (97)
115 1nu4_A U1A RNA binding domain; 98.7 2.5E-08 8.6E-13 76.5 6.5 73 181-280 8-84 (97)
116 1b7f_A Protein (SXL-lethal pro 98.7 4.8E-08 1.6E-12 80.1 8.4 78 180-281 88-167 (168)
117 2cpx_A Hypothetical protein FL 98.7 1.2E-08 4.2E-13 80.8 4.6 79 179-281 23-101 (115)
118 1wf1_A RNA-binding protein RAL 98.7 4.8E-08 1.6E-12 77.3 8.0 68 182-281 28-96 (110)
119 2ad9_A Polypyrimidine tract-bi 98.7 2.8E-08 9.5E-13 83.0 6.9 79 182-292 32-110 (119)
120 3n9u_C Cleavage and polyadenyl 98.7 3.8E-08 1.3E-12 84.4 7.9 86 180-293 54-141 (156)
121 2cqg_A TDP-43, TAR DNA-binding 98.7 7.8E-08 2.7E-12 74.9 8.8 81 178-288 12-92 (103)
122 2fc9_A NCL protein; structure 98.7 6E-08 2E-12 75.3 8.0 79 179-289 13-91 (101)
123 1b7f_A Protein (SXL-lethal pro 98.7 5.2E-08 1.8E-12 79.9 8.0 75 182-280 4-78 (168)
124 1fxl_A Paraneoplastic encephal 98.7 6.6E-08 2.2E-12 78.8 8.5 73 180-276 87-159 (167)
125 2i2y_A Fusion protein consists 98.7 5.8E-08 2E-12 80.8 8.2 75 178-281 70-144 (150)
126 3md3_A Nuclear and cytoplasmic 98.7 5.3E-08 1.8E-12 79.3 7.8 74 183-281 2-75 (166)
127 2qfj_A FBP-interacting repress 98.7 5.9E-08 2E-12 82.9 8.4 77 180-280 124-200 (216)
128 1wel_A RNA-binding protein 12; 98.7 1.9E-08 6.6E-13 81.5 4.9 78 179-281 23-100 (124)
129 2qfj_A FBP-interacting repress 98.6 9.1E-08 3.1E-12 81.7 9.3 73 183-279 30-102 (216)
130 2f3j_A RNA and export factor b 98.6 8E-08 2.7E-12 83.7 8.8 79 179-282 86-164 (177)
131 2cpd_A Apobec-1 stimulating pr 98.6 8.5E-08 2.9E-12 74.4 8.1 75 179-289 13-89 (99)
132 4f02_A Polyadenylate-binding p 98.6 6.9E-08 2.4E-12 84.5 8.4 75 182-280 16-90 (213)
133 1x4f_A Matrin 3; structural ge 98.6 3.5E-08 1.2E-12 81.6 6.0 73 182-282 26-99 (112)
134 3nmr_A Cugbp ELAV-like family 98.6 9.1E-08 3.1E-12 78.7 8.3 78 181-281 95-173 (175)
135 1wg5_A Heterogeneous nuclear r 98.6 9.8E-08 3.4E-12 75.3 8.1 77 179-281 13-90 (104)
136 2xs2_A Deleted in azoospermia- 98.6 6.7E-08 2.3E-12 75.2 6.9 76 179-281 7-82 (102)
137 2cpy_A RNA-binding protein 12; 98.6 7E-08 2.4E-12 77.3 7.1 77 179-281 13-90 (114)
138 2cjk_A Nuclear polyadenylated 98.6 7.3E-08 2.5E-12 79.1 7.3 75 181-280 87-161 (167)
139 2dgw_A Probable RNA-binding pr 98.6 1.1E-07 3.8E-12 72.4 7.9 77 178-281 7-83 (91)
140 3q2s_C Cleavage and polyadenyl 98.6 6.1E-08 2.1E-12 87.7 7.2 82 180-289 67-150 (229)
141 2a3j_A U1 small nuclear ribonu 98.6 1.3E-07 4.6E-12 78.9 8.5 75 182-287 30-108 (127)
142 3pgw_S U1-70K; protein-RNA com 98.6 8.8E-08 3E-12 94.7 8.6 80 179-282 100-179 (437)
143 2cq2_A Hypothetical protein LO 98.6 1.1E-07 3.6E-12 79.2 7.5 72 182-281 26-102 (114)
144 2ghp_A U4/U6 snRNA-associated 98.6 3.7E-07 1.3E-11 82.4 11.6 113 126-281 173-287 (292)
145 1fjc_A Nucleolin RBD2, protein 98.6 5.3E-08 1.8E-12 74.8 5.1 77 179-288 14-90 (96)
146 3zzy_A Polypyrimidine tract-bi 98.6 2.3E-07 7.8E-12 78.9 9.4 83 180-292 27-109 (130)
147 2e5i_A Heterogeneous nuclear r 98.6 2.2E-07 7.6E-12 77.9 9.2 77 184-291 28-104 (124)
148 3nmr_A Cugbp ELAV-like family 98.6 1.3E-07 4.3E-12 77.9 7.5 69 183-271 5-73 (175)
149 1fj7_A Nucleolin RBD1, protein 98.6 3.4E-08 1.2E-12 76.7 3.6 76 179-280 15-90 (101)
150 1l3k_A Heterogeneous nuclear r 98.5 1.5E-07 5.1E-12 79.2 7.6 76 179-279 102-177 (196)
151 2cqh_A IGF-II mRNA-binding pro 98.5 1.8E-07 6.2E-12 71.5 7.1 71 179-280 6-78 (93)
152 2lmi_A GRSF-1, G-rich sequence 98.5 1.7E-07 5.9E-12 74.2 7.3 76 178-279 8-86 (107)
153 4f02_A Polyadenylate-binding p 98.5 1.4E-07 4.9E-12 82.5 7.4 73 182-280 104-176 (213)
154 2lcw_A RNA-binding protein FUS 97.9 1E-08 3.6E-13 81.9 0.0 75 181-279 7-89 (116)
155 2wbr_A GW182, gawky, LD47780P; 98.5 1.7E-07 5.9E-12 75.6 7.1 69 183-281 9-77 (89)
156 1wg1_A KIAA1579 protein, homol 98.5 1.6E-07 5.6E-12 71.6 6.6 76 181-291 5-80 (88)
157 3egn_A RNA-binding protein 40; 98.5 7E-08 2.4E-12 79.7 4.6 83 178-288 42-129 (143)
158 2dnl_A Cytoplasmic polyadenyla 98.5 2.6E-07 8.9E-12 74.0 7.8 69 178-266 5-73 (114)
159 1l3k_A Heterogeneous nuclear r 98.5 2.5E-07 8.7E-12 77.8 8.0 78 179-281 11-88 (196)
160 3tyt_A Heterogeneous nuclear r 98.5 3.1E-07 1.1E-11 81.3 8.8 74 183-289 6-80 (205)
161 2hzc_A Splicing factor U2AF 65 98.5 2.9E-07 1E-11 69.0 7.4 71 179-280 4-85 (87)
162 2pe8_A Splicing factor 45; RRM 98.5 5.1E-07 1.7E-11 72.8 9.2 83 181-281 8-90 (105)
163 2db1_A Heterogeneous nuclear r 98.5 1.8E-07 6.1E-12 75.8 6.5 78 178-281 14-94 (118)
164 1sjr_A Polypyrimidine tract-bi 98.5 2.9E-07 9.9E-12 81.2 8.3 81 180-290 45-125 (164)
165 3d2w_A TAR DNA-binding protein 98.5 6E-07 2.1E-11 69.5 8.9 71 179-280 9-79 (89)
166 1x5p_A Negative elongation fac 98.5 3.5E-07 1.2E-11 70.8 7.6 72 182-289 16-87 (97)
167 1fje_B Nucleolin RBD12, protei 98.5 4.1E-07 1.4E-11 75.6 8.1 72 180-280 98-169 (175)
168 2e5g_A U6 snRNA-specific termi 98.5 2E-07 7E-12 71.7 5.6 72 179-280 6-77 (94)
169 3smz_A Protein raver-1, ribonu 98.4 1E-06 3.6E-11 79.2 11.0 114 127-290 152-265 (284)
170 2adc_A Polypyrimidine tract-bi 98.4 1.3E-06 4.5E-11 77.2 11.4 71 181-280 151-223 (229)
171 1wez_A HnRNP H', FTP-3, hetero 98.4 3.8E-07 1.3E-11 72.4 6.9 77 178-281 12-88 (102)
172 2cjk_A Nuclear polyadenylated 98.4 4.4E-07 1.5E-11 74.5 7.5 61 182-264 4-64 (167)
173 2fc8_A NCL protein; structure 98.4 5E-07 1.7E-11 70.0 6.9 80 178-288 12-91 (102)
174 1qm9_A Polypyrimidine tract-bi 98.4 6.4E-07 2.2E-11 76.2 7.8 71 182-281 4-75 (198)
175 3smz_A Protein raver-1, ribonu 98.4 6.9E-07 2.3E-11 80.4 8.4 75 182-280 96-170 (284)
176 2voo_A Lupus LA protein; RNA-b 98.4 3E-07 1E-11 81.0 5.8 80 183-288 111-190 (193)
177 2dnn_A RNA-binding protein 12; 98.4 1.1E-06 3.6E-11 71.5 8.5 71 182-279 17-87 (109)
178 2hgl_A HNRPF protein, heteroge 98.4 4.5E-07 1.5E-11 76.6 6.5 77 179-281 42-121 (136)
179 2adc_A Polypyrimidine tract-bi 98.4 8E-07 2.7E-11 78.6 8.1 71 182-281 35-106 (229)
180 2diu_A KIAA0430 protein; struc 98.4 8E-07 2.7E-11 72.7 7.2 66 182-281 9-80 (96)
181 3pgw_A U1-A; protein-RNA compl 98.4 1.1E-06 3.7E-11 79.0 8.6 71 182-281 208-279 (282)
182 2bz2_A Negative elongation fac 98.3 1.2E-06 4.2E-11 71.8 7.8 68 182-281 40-107 (121)
183 3ue2_A Poly(U)-binding-splicin 98.3 7.5E-07 2.6E-11 73.7 6.4 83 182-281 21-105 (118)
184 2dit_A HIV TAT specific factor 98.3 9.5E-07 3.3E-11 70.6 6.7 76 182-281 16-98 (112)
185 3pgw_A U1-A; protein-RNA compl 98.3 1.7E-06 5.7E-11 77.8 9.1 75 181-282 9-87 (282)
186 1qm9_A Polypyrimidine tract-bi 98.3 1.5E-06 5.1E-11 74.0 8.2 72 181-281 120-193 (198)
187 3v4m_A Splicing factor U2AF 65 98.3 1.5E-06 5.2E-11 69.9 7.8 65 205-281 29-93 (105)
188 3sde_A Paraspeckle component 1 98.3 1.2E-06 4.3E-11 78.9 7.7 92 182-296 97-190 (261)
189 3tyt_A Heterogeneous nuclear r 98.3 1.1E-06 3.6E-11 77.9 7.0 67 182-272 124-192 (205)
190 1wf0_A TDP-43, TAR DNA-binding 98.3 1.7E-06 5.9E-11 65.5 7.2 76 179-289 3-78 (88)
191 2hgn_A Heterogeneous nuclear r 98.3 6E-07 2E-11 76.2 5.1 74 179-279 44-117 (139)
192 2ghp_A U4/U6 snRNA-associated 98.2 2.4E-06 8.2E-11 77.1 7.9 76 181-281 117-193 (292)
193 2j8a_A Histone-lysine N-methyl 98.2 1.9E-06 6.6E-11 74.5 6.4 83 181-291 2-98 (136)
194 2dha_A FLJ20171 protein; RRM d 98.2 1.8E-06 6.3E-11 71.7 5.9 75 179-279 21-99 (123)
195 3sde_A Paraspeckle component 1 98.2 3.4E-06 1.2E-10 76.1 7.9 67 182-278 23-89 (261)
196 1jmt_A Splicing factor U2AF 35 98.2 3.6E-06 1.2E-10 67.5 6.9 59 208-281 43-102 (104)
197 3u1l_A PRE-mRNA-splicing facto 98.1 6.4E-06 2.2E-10 76.4 8.7 72 181-271 134-205 (240)
198 3s6e_A RNA-binding protein 39; 98.1 8.5E-06 2.9E-10 67.1 7.2 59 205-281 31-89 (114)
199 2hgm_A HNRPF protein, heteroge 98.0 1.4E-05 4.8E-10 66.9 7.7 75 179-280 40-116 (126)
200 1fje_B Nucleolin RBD12, protei 97.9 4.1E-06 1.4E-10 69.5 3.4 75 178-279 10-85 (175)
201 3tht_A Alkylated DNA repair pr 97.9 2.3E-05 7.8E-10 76.1 9.0 75 181-281 18-95 (345)
202 2g4b_A Splicing factor U2AF 65 97.9 1.8E-05 6E-10 65.1 7.0 68 182-280 5-83 (172)
203 1owx_A Lupus LA protein, SS-B, 97.9 3.7E-05 1.3E-09 64.8 7.8 71 183-280 20-91 (121)
204 2yh0_A Splicing factor U2AF 65 97.8 4.1E-05 1.4E-09 64.3 7.4 69 181-280 4-83 (198)
205 2d9o_A DNAJ (HSP40) homolog, s 97.8 4.7E-05 1.6E-09 61.2 7.3 63 201-288 27-89 (100)
206 2dnr_A Synaptojanin-1; RRM dom 97.7 3.1E-05 1.1E-09 62.8 5.2 76 181-285 6-87 (91)
207 3dxb_A Thioredoxin N-terminall 97.6 9.4E-05 3.2E-09 64.9 7.2 88 179-281 122-209 (222)
208 1ufw_A Synaptojanin 2; RNP dom 97.5 0.00011 3.6E-09 60.2 4.8 73 181-282 14-92 (95)
209 3d45_A Poly(A)-specific ribonu 60.2 14 0.00048 37.2 6.4 59 178-267 437-495 (507)
210 1whv_A Poly(A)-specific ribonu 56.4 22 0.00075 29.2 5.8 58 178-266 13-70 (100)
211 3ctr_A Poly(A)-specific ribonu 56.1 10 0.00034 31.2 3.7 57 179-266 4-60 (101)
212 2l9w_A U4/U6 snRNA-associated- 56.0 40 0.0014 28.4 7.4 72 179-280 19-95 (117)
213 1wey_A Calcipressin 1; structu 45.2 51 0.0017 27.0 6.3 75 179-278 3-77 (104)
214 1wwh_A Nucleoporin 35, nucleop 42.1 33 0.0011 28.6 4.9 62 179-270 22-83 (119)
215 1uw4_A UPF3X; nonsense mediate 27.0 2.3E+02 0.0078 22.2 8.7 80 183-282 3-83 (91)
216 4hsp_A Hypothetical protein; P 22.1 22 0.00077 30.9 0.5 24 127-150 47-70 (150)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.08 E-value=3.1e-10 Score=89.96 Aligned_cols=76 Identities=18% Similarity=0.381 Sum_probs=65.6
Q ss_pred CeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHH
Q 019393 182 DTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNT 261 (341)
Q Consensus 182 DTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kA 261 (341)
-+|||.|||..+ +|+.|+.+|++||+|..|.|+.+...++. .|+ |||+|....+..+|
T Consensus 20 t~lfV~nLp~~~----------te~~L~~~F~~~G~I~~v~i~~d~~tg~~---------kG~---afV~f~~~~~A~~A 77 (99)
T 4fxv_A 20 TNLIVNYLPQNM----------TQDELRSLFSSIGEVESAKLIRDKVAGHS---------LGY---GFVNYVTAKDAERA 77 (99)
T ss_dssp SEEEEESCCTTC----------CHHHHHHHHHTTSCEEEEEEEECSSSCCE---------EEE---EEEEESSHHHHHHH
T ss_pred CEEEEeCCCCCC----------CHHHHHHHHHhcCCEEEeEeeecCCCCcc---------ccc---EEEEECCHHHHHHH
Confidence 379999999988 89999999999999999999986544432 366 99999999999999
Q ss_pred HHHhcCccceecCceeEEEE
Q 019393 262 LKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 262 M~aLrGmKL~~kGk~l~a~i 281 (341)
+++|.|..| .|+.+.+++
T Consensus 78 i~~lng~~~--~gr~l~V~~ 95 (99)
T 4fxv_A 78 INTLNGLRL--QSKTIKVSY 95 (99)
T ss_dssp HHHHTTCEE--TTEECEEEE
T ss_pred HHHhCCCEE--CCEEEEEEE
Confidence 999999988 888766543
No 2
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.05 E-value=5.5e-10 Score=83.75 Aligned_cols=78 Identities=19% Similarity=0.370 Sum_probs=66.4
Q ss_pred CCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHH
Q 019393 180 EPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFY 259 (341)
Q Consensus 180 RPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~ 259 (341)
..-||||.|||..+ +++.|+.+|++||+|..|.|+.+...+.. .|+ |||+|....+..
T Consensus 6 ~~~~l~V~nl~~~~----------~~~~l~~~f~~~G~i~~v~i~~~~~~~~~---------~g~---afV~f~~~~~a~ 63 (85)
T 3mdf_A 6 TKRVLYVGGLAEEV----------DDKVLHAAFIPFGDITDIQIPLDYETEKH---------RGF---AFVEFELAEDAA 63 (85)
T ss_dssp CSSEEEEECCCTTC----------CHHHHHHHHGGGSCEEEEECCEETTTTEE---------CSE---EEEEESSHHHHH
T ss_pred CCCEEEEECCCCCC----------CHHHHHHHHhccCCEEEEEEEECCCCCcc---------ccE---EEEEECCHHHHH
Confidence 34699999999887 88999999999999999999876544432 367 999999999999
Q ss_pred HHHHHhcCccceecCceeEEEE
Q 019393 260 NTLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 260 kAM~aLrGmKL~~kGk~l~a~i 281 (341)
+|++.|.|..+ .|+.+.+.+
T Consensus 64 ~A~~~l~g~~~--~g~~l~v~~ 83 (85)
T 3mdf_A 64 AAIDNMNESEL--FGRTIRVNL 83 (85)
T ss_dssp HHHHHHTTCEE--TTEECEEEE
T ss_pred HHHHHhCCCEE--CCcEEEEEE
Confidence 99999999988 787766553
No 3
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.03 E-value=8.4e-10 Score=87.77 Aligned_cols=82 Identities=18% Similarity=0.368 Sum_probs=67.6
Q ss_pred CCCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCc--eeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccc
Q 019393 178 KQEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGK--IRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKY 255 (341)
Q Consensus 178 geRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGk--IRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey 255 (341)
.+.=+||+|+|||..+ +++-|+.+|++||. |.+|.|+.+...++. .|+ |||+|...
T Consensus 6 ~~~m~tlfV~nL~~~~----------tee~L~~~F~~~G~i~v~~v~i~~d~~tg~s---------rG~---aFV~f~~~ 63 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHT----------VVDSIMTALSPYASLAVNNIRLIKDKQTQQN---------RGF---AFVQLSSA 63 (95)
T ss_dssp SCCCCEEEEESCCTTC----------CHHHHHHHSTTTCCCCGGGEECCCCSSSSSC---------SSE---EEEECSSS
T ss_pred CCccCEEEEeCCCCcC----------CHHHHHHHHHhhCCccEEEEEEEecCCCCCC---------ceE---eEEEECCH
Confidence 4667999999999998 99999999999995 678888876555543 378 99999999
Q ss_pred hHHHHHHHHhcCcc--ceecCceeEEEE
Q 019393 256 RDFYNTLKVLCGRS--MQKQGSQLKADY 281 (341)
Q Consensus 256 ~~F~kAM~aLrGmK--L~~kGk~l~a~i 281 (341)
.+..+|+++|.|.. +..+|+.+.+++
T Consensus 64 ~~A~~Ai~~lng~~~~~~i~Gr~i~V~~ 91 (95)
T 2lkz_A 64 MDASQLLQILQSLHPPLKIDGKTIGVDF 91 (95)
T ss_dssp HHHHHHHHHHHSSSSCEEETTEEEEEEE
T ss_pred HHHHHHHHHhcCCCCCceECCEEEEEEE
Confidence 99999999999975 344798765544
No 4
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.03 E-value=4.8e-10 Score=88.26 Aligned_cols=76 Identities=24% Similarity=0.363 Sum_probs=66.0
Q ss_pred CeEEEcCCcc------ccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccc
Q 019393 182 DTIVIKGVPS------RWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKY 255 (341)
Q Consensus 182 DTI~l~gLP~------rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey 255 (341)
-||+|.|||. .+ +++.|+.+|++||+|..|.||.+...++. .|+ |||+|...
T Consensus 7 ~~vfV~nLp~v~~~~~~~----------~~~~L~~~F~~~G~i~~v~i~~d~~tg~~---------kG~---afV~f~~~ 64 (100)
T 3ns6_A 7 QYIVVNGAPVIPSAKVPV----------LKKALTSLFSKAGKVVNMEFPIDEATGKT---------KGF---LFVECGSM 64 (100)
T ss_dssp GEEEEESCCCCBGGGHHH----------HHHHHHHHHHTTSCEEEEECCEETTTTEE---------CSE---EEEEESSH
T ss_pred cEEEEeCCCcCChHHHHH----------HHHHHHHHHHhcCCEeEEEEEEcCCCCcc---------ceE---EEEEECCH
Confidence 3899999998 66 88899999999999999999987655543 378 99999999
Q ss_pred hHHHHHHHHhcCccceecC-ceeEEEE
Q 019393 256 RDFYNTLKVLCGRSMQKQG-SQLKADY 281 (341)
Q Consensus 256 ~~F~kAM~aLrGmKL~~kG-k~l~a~i 281 (341)
.+..+|+++|.|..+ .| +.+.+++
T Consensus 65 ~~A~~Ai~~lng~~~--~g~r~l~V~~ 89 (100)
T 3ns6_A 65 NDAKKIIKSFHGKRL--DLKHRLFLYT 89 (100)
T ss_dssp HHHHHHHHHHTTCBS--SSSCBCEEEE
T ss_pred HHHHHHHHHhCCccc--CCCeEEEEEE
Confidence 999999999999998 77 7776654
No 5
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.02 E-value=7.6e-10 Score=83.27 Aligned_cols=80 Identities=21% Similarity=0.345 Sum_probs=67.6
Q ss_pred CCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHH
Q 019393 179 QEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDF 258 (341)
Q Consensus 179 eRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F 258 (341)
..|-||+|.|||..+ +++.|+.+|++||.|..|.|+.+...+. ...|. |||+|....+.
T Consensus 2 ~~~~~l~V~nlp~~~----------t~~~l~~~F~~~G~i~~~~i~~~~~~~~--------~~~g~---afV~f~~~~~a 60 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNV----------TKDHIMEIFSTYGKIKMIDMPVERMHPH--------LSKGY---AYVEFENPDEA 60 (88)
T ss_dssp CCCCEEEEECCCTTC----------CHHHHHHHHHTTSCEEEEECCEETTEEE--------EECSE---EEEEESSHHHH
T ss_pred CCCCEEEEeCCCCCC----------CHHHHHHHHHhCCCEEEEEEEeCCCCCC--------CCCcE---EEEEEecHHHH
Confidence 457899999999888 8999999999999999999998654322 12366 99999999999
Q ss_pred HHHHHHhcCccceecCceeEEEE
Q 019393 259 YNTLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 259 ~kAM~aLrGmKL~~kGk~l~a~i 281 (341)
.+|+++|.|..+ .|+.+.+.+
T Consensus 61 ~~A~~~l~g~~~--~g~~l~v~~ 81 (88)
T 4a8x_A 61 EKALKHMDGGQI--DGQEITATA 81 (88)
T ss_dssp HHHHHHHTTCEE--TTEECEEEE
T ss_pred HHHHHHcCCCeE--CCeEEEEEE
Confidence 999999999998 888776654
No 6
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=1.9e-09 Score=82.54 Aligned_cols=78 Identities=19% Similarity=0.350 Sum_probs=66.2
Q ss_pred CCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHH
Q 019393 179 QEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDF 258 (341)
Q Consensus 179 eRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F 258 (341)
..+-||||.|||..+ +++.|+.+|++||+|..|.|+.+...++. .|+ |||+|....+.
T Consensus 3 ~~~~~l~v~nlp~~~----------t~~~l~~~f~~~G~v~~v~i~~~~~~~~~---------~g~---afV~f~~~~~a 60 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNI----------TEDMLRGIFEPFGKIDNIVLMKDSDTGRS---------KGY---GFITFSDSECA 60 (95)
T ss_dssp SCCCEEEEESCCTTC----------CHHHHHHHHTTTSCEEEEEEECCSSSCCC---------CSE---EEEEESCHHHH
T ss_pred CCCcEEEEeCCCCCC----------CHHHHHHHHHhcCCEeEEEEeecCCCCce---------eeE---EEEEECCHHHH
Confidence 456799999999988 88999999999999999999976444332 266 99999999999
Q ss_pred HHHHHHhcCccceecCceeEEE
Q 019393 259 YNTLKVLCGRSMQKQGSQLKAD 280 (341)
Q Consensus 259 ~kAM~aLrGmKL~~kGk~l~a~ 280 (341)
.+|++.|.|..+ .|+.+.+.
T Consensus 61 ~~A~~~l~g~~~--~g~~l~V~ 80 (95)
T 2dnz_A 61 RRALEQLNGFEL--AGRPMRVG 80 (95)
T ss_dssp HHHHHHHTTCCS--SSSCCEEE
T ss_pred HHHHHHhCCCee--CCcEEEEE
Confidence 999999999988 78776543
No 7
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=1.1e-09 Score=83.81 Aligned_cols=79 Identities=19% Similarity=0.346 Sum_probs=66.9
Q ss_pred CCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHH
Q 019393 179 QEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDF 258 (341)
Q Consensus 179 eRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F 258 (341)
..+-||||.|||..+ +++.|+.+|++||+|.+|.|+.+...++. .|+ |||+|....+.
T Consensus 14 ~~~~~l~V~nlp~~~----------t~~~l~~~f~~~G~v~~v~i~~~~~~~~~---------~g~---afV~f~~~~~A 71 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSL----------TNNDLYRIFSKYGKVVKVTIMKDKDTRKS---------KGV---AFILFLDKDSA 71 (94)
T ss_dssp CCTTSEEEESCCTTS----------CHHHHHHHTTTTSCEEEEEECCCSSSCCC---------TTC---EEEEESCHHHH
T ss_pred CCCCEEEEECCCCCC----------CHHHHHHHHHhcCCeEEEEEEeCCCCCCc---------ccE---EEEEECCHHHH
Confidence 344699999999877 88999999999999999999887554442 266 99999999999
Q ss_pred HHHHHHhcCccceecCceeEEEE
Q 019393 259 YNTLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 259 ~kAM~aLrGmKL~~kGk~l~a~i 281 (341)
.+||++|.|..+ .|+.+.+.+
T Consensus 72 ~~A~~~l~g~~~--~g~~l~v~~ 92 (94)
T 2e5h_A 72 QNCTRAINNKQL--FGRVIKASI 92 (94)
T ss_dssp HHHHHHTTTEEE--TTEEEEEEE
T ss_pred HHHHHHcCCCee--CCcEEEEEe
Confidence 999999999888 787776654
No 8
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.01 E-value=1.1e-09 Score=85.62 Aligned_cols=76 Identities=22% Similarity=0.493 Sum_probs=65.3
Q ss_pred CeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHH
Q 019393 182 DTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNT 261 (341)
Q Consensus 182 DTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kA 261 (341)
-||||.|||..+ +++.|+.+|++||+|.+|.|+.+...+. ..|+ |||+|....+..+|
T Consensus 24 ~~l~V~nlp~~~----------t~~~l~~~f~~~G~i~~v~i~~~~~~~~---------~~g~---afV~f~~~~~a~~A 81 (106)
T 1p27_B 24 WILFVTGVHEEA----------TEEDIHDKFAEYGEIKNIHLNLDRRTGY---------LKGY---TLVEYETYKEAQAA 81 (106)
T ss_dssp EEEEEECCCTTC----------CHHHHHHHHGGGSCEEEEEEEECTTTSS---------EEEE---EEEEESCHHHHHHH
T ss_pred CEEEEeCCCCCC----------CHHHHHHHHhccCCeEEEEEEecCCCCc---------eeeE---EEEEECCHHHHHHH
Confidence 479999999987 8899999999999999999987754443 2366 99999999999999
Q ss_pred HHHhcCccceecCceeEEEE
Q 019393 262 LKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 262 M~aLrGmKL~~kGk~l~a~i 281 (341)
+++|.|..+ .|+.+.+.+
T Consensus 82 ~~~l~g~~~--~g~~l~V~~ 99 (106)
T 1p27_B 82 MEGLNGQDL--MGQPISVDW 99 (106)
T ss_dssp HHHHTTCBS--SSSBCEEEE
T ss_pred HHHhcCCEE--CCcEEEEEe
Confidence 999999988 788776654
No 9
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.01 E-value=1.1e-09 Score=84.68 Aligned_cols=89 Identities=11% Similarity=0.215 Sum_probs=74.8
Q ss_pred CCCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCcee-eeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccch
Q 019393 178 KQEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIR-NLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYR 256 (341)
Q Consensus 178 geRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIR-nvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~ 256 (341)
...+-||||.|||..+ +++.|+.+|++||+|. .|.|+.+...+. ..|+ |||+|....
T Consensus 6 ~~~~~~l~V~nLp~~~----------t~~~l~~~F~~~G~i~~~v~i~~~~~~g~---------~~g~---afV~f~~~~ 63 (99)
T 2div_A 6 SGMAASLWMGDLEPYM----------DENFISRAFATMGETVMSVKIIRNRLTGI---------PAGY---CFVEFADLA 63 (99)
T ss_dssp CSSSSEEEECSCCTTC----------CHHHHHHHHHHTTCCCCEEEEEECSSSCC---------EEEE---EEEECSCHH
T ss_pred CCCccEEEEeCCCCCC----------CHHHHHHHHHHhCCcceEEEEeecCCCCC---------cCCE---EEEEeCCHH
Confidence 3456799999999988 8999999999999999 999987644333 2266 999999999
Q ss_pred HHHHHHHHhcCccceecCceeEEEEEEeecccCC
Q 019393 257 DFYNTLKVLCGRSMQKQGSQLKADYEVTWDKDGF 290 (341)
Q Consensus 257 ~F~kAM~aLrGmKL~~kGk~l~a~ikV~fD~tkh 290 (341)
+..+|++.|.|..+ .|+.....|+|.|.+.+-
T Consensus 64 ~a~~A~~~l~g~~~--~g~~~~~~l~v~~a~~~~ 95 (99)
T 2div_A 64 TAEKCLHKINGKPL--PGATPAKRFKLNYATYSG 95 (99)
T ss_dssp HHHHHHHTTTTSEE--SSCSSCEECCEEETTCCS
T ss_pred HHHHHHHHHcCCcc--CCCCcceeEEEeecCCCC
Confidence 99999999999888 888877778888877554
No 10
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.00 E-value=1.2e-09 Score=82.26 Aligned_cols=76 Identities=21% Similarity=0.381 Sum_probs=64.4
Q ss_pred CeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHH
Q 019393 182 DTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNT 261 (341)
Q Consensus 182 DTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kA 261 (341)
-||+|.|||..+ +++.|+.+|++||+|.+|.|+.+...+. ..|. |||+|....+..+|
T Consensus 7 ~~l~v~nlp~~~----------t~~~l~~~F~~~G~i~~v~i~~~~~~~~---------~~g~---afV~f~~~~~A~~A 64 (87)
T 3bs9_A 7 FHVFVGDLSPEI----------TTAAIAAAFAPFGRISDARVVKDMATGK---------SKGY---GFVSFFNKWDAENA 64 (87)
T ss_dssp EEEEEESCCTTC----------CHHHHHHHHGGGSCEEEEEEEECTTTCC---------EEEE---EEEEESSHHHHHHH
T ss_pred eEEEEeCCCCCC----------CHHHHHHHHHhcCCEeEEEEEecCCCCc---------cceE---EEEEECCHHHHHHH
Confidence 489999999887 8999999999999999999987643333 2366 99999999999999
Q ss_pred HHHhcCccceecCceeEEEE
Q 019393 262 LKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 262 M~aLrGmKL~~kGk~l~a~i 281 (341)
++.|.|..+ .|+.+.+.+
T Consensus 65 ~~~l~g~~~--~g~~l~v~~ 82 (87)
T 3bs9_A 65 IQQMGGQWL--GGRQIRTNW 82 (87)
T ss_dssp HHHHTTCEE--TTEECEEEE
T ss_pred HHHcCCCEE--CCeEEEEEe
Confidence 999999887 787665544
No 11
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=98.99 E-value=1.3e-09 Score=81.42 Aligned_cols=74 Identities=18% Similarity=0.254 Sum_probs=63.6
Q ss_pred eEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHH
Q 019393 183 TIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTL 262 (341)
Q Consensus 183 TI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM 262 (341)
||+|.|||..+ +++.|+.+|++||+|..+.|+.+...+. ..|. |||+|....+..+||
T Consensus 3 ~l~V~nlp~~~----------t~~~l~~~f~~~G~i~~~~i~~~~~~~~---------~~g~---afV~f~~~~~a~~a~ 60 (83)
T 3md1_A 3 NLFVGDLNVNV----------DDETLRNAFKDFPSYLSGHVMWDMQTGS---------SRGY---GFVSFTSQDDAQNAM 60 (83)
T ss_dssp EEEEECCCTTC----------CHHHHHHHHTTSTTEEEEEEEECTTTCC---------EEEE---EEEEESCHHHHHHHH
T ss_pred EEEEeCCCCCC----------CHHHHHHHHHhcCCeeEEEEEEcCCCCC---------ccce---EEEEECCHHHHHHHH
Confidence 89999999988 8999999999999999999987644433 2366 999999999999999
Q ss_pred HHhcCccceecCceeEEE
Q 019393 263 KVLCGRSMQKQGSQLKAD 280 (341)
Q Consensus 263 ~aLrGmKL~~kGk~l~a~ 280 (341)
++|.|..+ .|+.+.++
T Consensus 61 ~~l~g~~~--~g~~l~v~ 76 (83)
T 3md1_A 61 DSMQGQDL--NGRPLRIN 76 (83)
T ss_dssp HHHTTCEE--TTEECEEE
T ss_pred HHhcCCee--CCcEEEEE
Confidence 99999998 78766544
No 12
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.99 E-value=2e-09 Score=83.21 Aligned_cols=78 Identities=18% Similarity=0.226 Sum_probs=65.9
Q ss_pred CCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHH
Q 019393 179 QEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDF 258 (341)
Q Consensus 179 eRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F 258 (341)
...-||||.|||..+ +++.|+.+|+.||+|..|.|+.+...++. .|+ |||+|....+.
T Consensus 6 ~~~~~l~V~nlp~~~----------t~~~l~~~F~~~G~i~~v~i~~~~~~~~~---------~g~---afV~f~~~~~a 63 (99)
T 1whw_A 6 SGSGRLFVRNLSYTS----------SEEDLEKLFSAYGPLSELHYPIDSLTKKP---------KGF---AFVTFMFPEHA 63 (99)
T ss_dssp CSCEEEEEECCCTTC----------CHHHHHHHHHTTSCEEEEECCCCTTTCCC---------CSE---EEEEESSHHHH
T ss_pred CCCCEEEEeCCCCCC----------CHHHHHHHHHhcCCEeEEEEEecCCCCCc---------CeE---EEEEECCHHHH
Confidence 445699999999887 88999999999999999999987544432 367 99999999999
Q ss_pred HHHHHHhcCccceecCceeEEE
Q 019393 259 YNTLKVLCGRSMQKQGSQLKAD 280 (341)
Q Consensus 259 ~kAM~aLrGmKL~~kGk~l~a~ 280 (341)
.+||+.|.|..+ .|+.+.+.
T Consensus 64 ~~A~~~l~g~~~--~g~~l~V~ 83 (99)
T 1whw_A 64 VKAYAEVDGQVF--QGRMLHVL 83 (99)
T ss_dssp HHHHHHTTTEES--SSCEEEEE
T ss_pred HHHHHHhCCCEE--CCcEEEEE
Confidence 999999999988 68765443
No 13
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=98.99 E-value=1.2e-09 Score=88.33 Aligned_cols=79 Identities=16% Similarity=0.207 Sum_probs=67.4
Q ss_pred CCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHH
Q 019393 181 PDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYN 260 (341)
Q Consensus 181 PDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~k 260 (341)
+-||||.|||... +|+.|+.+|++||+|..|.|+.+...++. .|+ |||+|....+..+
T Consensus 6 ~~~lfV~nL~~~~----------te~~L~~~F~~~G~i~~v~i~~d~~tg~~---------rG~---aFV~f~~~~~A~~ 63 (110)
T 3s8s_A 6 LKEVTFARLNDNV----------RETFLKDMCRKYGEVEEVEILLHPRTRKH---------LGL---ARVLFTSTRGAKE 63 (110)
T ss_dssp CCEEEEESCCTTC----------CHHHHHHHHTTTSCEEEEEEEECTTTCCE---------EEE---EEEEESSHHHHHH
T ss_pred CcEEEEECCCCCC----------CHHHHHHHHHhcCCeeEEEEEECCCCCce---------eeE---EEEEECCHHHHHH
Confidence 4599999999776 89999999999999999999987554443 377 9999999999999
Q ss_pred HHHHhcCccceecCceeEEEEEEeecc
Q 019393 261 TLKVLCGRSMQKQGSQLKADYEVTWDK 287 (341)
Q Consensus 261 AM~aLrGmKL~~kGk~l~a~ikV~fD~ 287 (341)
|++.|.|..| .|+.+ +|.|+.
T Consensus 64 Ai~~lng~~~--~gr~i----~V~~a~ 84 (110)
T 3s8s_A 64 TVKNLHLTSV--MGNII----HAQLDI 84 (110)
T ss_dssp HHHHHTTCEE--TTEEC----EEEECS
T ss_pred HHHHhCCCEE--CCeEE----EEEECC
Confidence 9999999999 78765 555654
No 14
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=98.98 E-value=7.1e-10 Score=86.26 Aligned_cols=75 Identities=12% Similarity=0.278 Sum_probs=62.5
Q ss_pred CeEEEcCCccccccCCCCCCCCcHHHHHHHhhccC-ceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHH
Q 019393 182 DTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFG-KIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYN 260 (341)
Q Consensus 182 DTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FG-kIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~k 260 (341)
.||+|+|||..+ +|+-|+.+|++|| +|.+|.|+.+...+.. .|+ |||+|....+..+
T Consensus 2 ~~i~v~nLp~~~----------te~~l~~~F~~~G~~v~~v~i~~d~~t~~~---------rg~---aFV~F~~~~~A~~ 59 (91)
T 2lxi_A 2 NIVMLRMLPQAA----------TEDDIRGQLQSHGVQAREVRLMRNKSSGQS---------RGF---AFVEFSHLQDATR 59 (91)
T ss_dssp CEEEEETCCSSC----------CHHHHHHHHHHHTCCCSBCCSSSCSSSCCC---------SSE---EEEECSSHHHHHH
T ss_pred CEEEEeCCCCCC----------CHHHHHHHHHHhCCEeEEEEEEecCCCCCc---------Cce---EEEEecCHHHHHH
Confidence 489999999998 9999999999999 8999999887554443 377 9999999999999
Q ss_pred HHHHhcC-ccceecCceeEEE
Q 019393 261 TLKVLCG-RSMQKQGSQLKAD 280 (341)
Q Consensus 261 AM~aLrG-mKL~~kGk~l~a~ 280 (341)
||++|.+ +.+ .|+.+.++
T Consensus 60 Ai~~~~~~~~~--~gr~i~V~ 78 (91)
T 2lxi_A 60 WMEANQHSLNI--LGQKVSMH 78 (91)
T ss_dssp HHHTTTTEEEE--TTEEEEEE
T ss_pred HHHhcCCCeEE--CCEEEEEE
Confidence 9999854 445 78765544
No 15
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=98.98 E-value=2.2e-09 Score=82.92 Aligned_cols=79 Identities=14% Similarity=0.267 Sum_probs=65.3
Q ss_pred CeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHH
Q 019393 182 DTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNT 261 (341)
Q Consensus 182 DTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kA 261 (341)
-||+|.|||..+ +++.|+.+|++||.|.+|.|+.+...++ ..|+ |||+|....+..+|
T Consensus 3 ~~l~V~nLp~~~----------t~~~l~~~F~~~G~i~~v~i~~~~~~g~---------~~g~---afV~f~~~~~A~~A 60 (96)
T 2x1f_A 3 RVVYLGSIPYDQ----------TEEQILDLCSNVGPVINLKMMFDPQTGR---------SKGY---AFIEFRDLESSASA 60 (96)
T ss_dssp SEEEEESCCTTC----------CHHHHHHHHHTTSCEEEEECCBCTTTCC---------BCSE---EEEEESSHHHHHHH
T ss_pred cEEEEECCCCCC----------CHHHHHHHHHhcCCEEEEEEEeCCCCCc---------cceE---EEEEECCHHHHHHH
Confidence 389999999877 8899999999999999999987644333 2377 99999999999999
Q ss_pred HHHhcCccceecCceeEEEEEEeeccc
Q 019393 262 LKVLCGRSMQKQGSQLKADYEVTWDKD 288 (341)
Q Consensus 262 M~aLrGmKL~~kGk~l~a~ikV~fD~t 288 (341)
++.|.|..+ .|+. |+|.|.+.
T Consensus 61 i~~l~g~~~--~g~~----l~V~~a~~ 81 (96)
T 2x1f_A 61 VRNLNGYQL--GSRF----LKCGYSSN 81 (96)
T ss_dssp HHHHTTCEE--TTEE----CEEEECSC
T ss_pred HHHhCCCeE--CCeE----EEEEEcCC
Confidence 999999888 7755 45555543
No 16
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.98 E-value=1.2e-09 Score=83.54 Aligned_cols=80 Identities=19% Similarity=0.258 Sum_probs=66.0
Q ss_pred CCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHH
Q 019393 181 PDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYN 260 (341)
Q Consensus 181 PDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~k 260 (341)
.-||||.|||..+ +++.|+.+|++||+|..|.|+.+...++ ..|. |||+|....+..+
T Consensus 15 ~~~l~v~nlp~~~----------t~~~l~~~f~~~G~v~~v~i~~~~~~~~---------~~g~---afV~f~~~~~A~~ 72 (95)
T 2cqc_A 15 NCCLGVFGLSLYT----------TERDLREVFSKYGPIADVSIVYDQQSRR---------SRGF---AFVYFENVDDAKE 72 (95)
T ss_dssp GGCEEEESCCSSC----------CHHHHHHHHHTTSCEEEEEEEECSSSSS---------EEEE---EEEEESSHHHHHH
T ss_pred CCEEEEECCCCCC----------CHHHHHHHHHhcCCeeEEEEEEcCCCCC---------cccE---EEEEECCHHHHHH
Confidence 3589999999987 8899999999999999999987644333 2256 9999999999999
Q ss_pred HHHHhcCccceecCceeEEEEEEeeccc
Q 019393 261 TLKVLCGRSMQKQGSQLKADYEVTWDKD 288 (341)
Q Consensus 261 AM~aLrGmKL~~kGk~l~a~ikV~fD~t 288 (341)
||++|.|..+ .|+. |+|.|-++
T Consensus 73 A~~~l~g~~~--~g~~----l~v~~a~~ 94 (95)
T 2cqc_A 73 AKERANGMEL--DGRR----IRVSGPSS 94 (95)
T ss_dssp HHHHHTTEEE--TTEE----EEEECCSC
T ss_pred HHHHhCCCEE--CCEE----EEEEecCC
Confidence 9999999888 6765 45555554
No 17
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.97 E-value=2.7e-09 Score=82.94 Aligned_cols=80 Identities=23% Similarity=0.435 Sum_probs=67.7
Q ss_pred CCCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchH
Q 019393 178 KQEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRD 257 (341)
Q Consensus 178 geRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~ 257 (341)
...+-||||.|||..+ +++.|+.+|+.||+|..|.|+.+...+.. .|+ |||+|....+
T Consensus 9 ~~~~~~l~v~nLp~~~----------t~~~l~~~f~~~G~i~~v~i~~~~~~~~~---------~g~---afV~f~~~~~ 66 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDT----------NEQSLEQVFSKYGQISEVVVVKDRETQRS---------RGF---GFVTFENIDD 66 (102)
T ss_dssp CCCCSEEEEESCCTTC----------CHHHHHHHHHHHSCCCEEEECCCSSSCSC---------CSE---EEEECSSHHH
T ss_pred CCCCCEEEEECCCCCC----------CHHHHHHHHHhcCCeEEEEEEeCCCCCCc---------ccE---EEEEECCHHH
Confidence 3456699999999887 88999999999999999999886544332 267 9999999999
Q ss_pred HHHHHHHhcCccceecCceeEEEE
Q 019393 258 FYNTLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 258 F~kAM~aLrGmKL~~kGk~l~a~i 281 (341)
..+||+.|.|..+ .|+.+.+.+
T Consensus 67 A~~A~~~l~g~~~--~g~~l~v~~ 88 (102)
T 1x5s_A 67 AKDAMMAMNGKSV--DGRQIRVDQ 88 (102)
T ss_dssp HHHHHHHHTTCCT--TSCCCEEEE
T ss_pred HHHHHHHhCCCEE--CCeEEEEEE
Confidence 9999999999998 788766554
No 18
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.96 E-value=3.3e-09 Score=82.76 Aligned_cols=79 Identities=18% Similarity=0.330 Sum_probs=66.8
Q ss_pred CCCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchH
Q 019393 178 KQEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRD 257 (341)
Q Consensus 178 geRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~ 257 (341)
...+-||||.|||..+ +++.|+.+|++||+|..|.|+.+...++. .|+ |||+|....+
T Consensus 10 ~~~~~~l~V~nLp~~~----------t~~~l~~~f~~~G~i~~v~i~~~~~~~~~---------~g~---afV~f~~~~~ 67 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRT----------SPDSLRRVFEKYGRVGDVYIPREPHTKAP---------RGF---AFVRFHDRRD 67 (103)
T ss_dssp CSCCCEEEEESCCTTC----------CHHHHHHHHTTTSCEEEEECCBCSSSCSB---------CSC---EEEEESSSSH
T ss_pred CCCCeEEEEeCCCCCC----------CHHHHHHHHHhcCCEEEEEEEeCCCCCCC---------CeE---EEEEECCHHH
Confidence 3456799999999887 89999999999999999999987544432 367 9999999999
Q ss_pred HHHHHHHhcCccceecCceeEEE
Q 019393 258 FYNTLKVLCGRSMQKQGSQLKAD 280 (341)
Q Consensus 258 F~kAM~aLrGmKL~~kGk~l~a~ 280 (341)
..+||++|.|..+ .|+.+.+.
T Consensus 68 A~~A~~~l~g~~~--~g~~l~V~ 88 (103)
T 2dnm_A 68 AQDAEAAMDGAEL--DGRELRVQ 88 (103)
T ss_dssp HHHHHHHHSSCCB--TTBCCEEE
T ss_pred HHHHHHHcCCCEE--CCcEEEEE
Confidence 9999999999998 78765443
No 19
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.96 E-value=1.8e-09 Score=83.95 Aligned_cols=84 Identities=20% Similarity=0.307 Sum_probs=68.8
Q ss_pred CCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHH
Q 019393 179 QEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDF 258 (341)
Q Consensus 179 eRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F 258 (341)
...-||||.|||..+ +++.|+.+|++||+|..|.|+.+...++. .|+ |||+|....+.
T Consensus 10 ~~~~~l~V~nLp~~~----------t~~~l~~~f~~~G~i~~v~i~~~~~~~~~---------~g~---afV~f~~~~~A 67 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEV----------DDKVLHAAFIPFGDITDIQIPLDYETEKH---------RGF---AFVEFELAEDA 67 (102)
T ss_dssp CCCSCEEEESCCSSC----------CHHHHHHHHTTTSCCCCEECCCCSSSCCC---------SSE---EEECCSSHHHH
T ss_pred CCCCEEEEeCCCCCC----------CHHHHHHHhhccCCEEEEEEEecCCCCCc---------ceE---EEEEECCHHHH
Confidence 445699999999887 89999999999999999999887444432 367 99999999999
Q ss_pred HHHHHHhcCccceecCceeEEEEEEeecccCC
Q 019393 259 YNTLKVLCGRSMQKQGSQLKADYEVTWDKDGF 290 (341)
Q Consensus 259 ~kAM~aLrGmKL~~kGk~l~a~ikV~fD~tkh 290 (341)
.+|+++|.|..+ .|+. |+|.|.+.+.
T Consensus 68 ~~A~~~l~g~~~--~g~~----l~V~~a~~~~ 93 (102)
T 2cqb_A 68 AAAIDNMNESEL--FGRT----IRVNLAKPMR 93 (102)
T ss_dssp HHHHHHHTTEEE--TTEE----EEEEECCCCC
T ss_pred HHHHHHhCCCEE--CCcE----EEEEeCCCCC
Confidence 999999999888 6765 4555555443
No 20
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=98.96 E-value=2.9e-09 Score=86.21 Aligned_cols=82 Identities=24% Similarity=0.404 Sum_probs=68.9
Q ss_pred CCCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchH
Q 019393 178 KQEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRD 257 (341)
Q Consensus 178 geRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~ 257 (341)
...+-||||.|||..+ +++.|+.+|++||+|.+|.|+.+. .++ ..|+ |||+|....+
T Consensus 4 ~~~~~~l~V~nLp~~~----------t~~~l~~~F~~~G~i~~v~i~~~~-~g~---------~~g~---afV~F~~~~~ 60 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRET----------NEKMLKAVFGKHGPISEVLLIKDR-TSK---------SRGF---AFITFENPAD 60 (116)
T ss_dssp TCSCCEEEEECCTTTC----------CHHHHHHHHHTSSCCSEEEEECST-TTT---------CCCE---EEEECSSHHH
T ss_pred CCCCCEEEEeCCCCCC----------CHHHHHHHHHhcCCEEEEEEEECC-CCC---------cccE---EEEEECCHHH
Confidence 3567799999999987 899999999999999999999875 433 2377 9999999999
Q ss_pred HHHHHHHhcCccceecCceeEEEEEEeeccc
Q 019393 258 FYNTLKVLCGRSMQKQGSQLKADYEVTWDKD 288 (341)
Q Consensus 258 F~kAM~aLrGmKL~~kGk~l~a~ikV~fD~t 288 (341)
..+|+++|.|..+ .|+.+ +|.|.+.
T Consensus 61 A~~Ai~~l~g~~~--~g~~l----~V~~a~~ 85 (116)
T 2fy1_A 61 AKNAAKDMNGKSL--HGKAI----KVEQAKK 85 (116)
T ss_dssp HHHHHHHCSSCBC--SSSBC----EEEECCC
T ss_pred HHHHHHHhCCCEE--CCEEE----EEEECCC
Confidence 9999999999998 78765 4555553
No 21
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=98.95 E-value=3.3e-09 Score=83.69 Aligned_cols=77 Identities=17% Similarity=0.350 Sum_probs=65.2
Q ss_pred CCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHH
Q 019393 181 PDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYN 260 (341)
Q Consensus 181 PDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~k 260 (341)
.-||||.|||..+ ++..|+.+|++||+|..|.|+.+...+.. .|+ |||+|....+..+
T Consensus 26 ~~~l~V~nlp~~~----------t~~~l~~~F~~~G~i~~v~i~~~~~~~~~---------~g~---afV~f~~~~~A~~ 83 (110)
T 1oo0_B 26 GWILFVTSIHEEA----------QEDEIQEKFCDYGEIKNIHLNLDRRTGFS---------KGY---ALVEYETHKQALA 83 (110)
T ss_dssp BEEEEEESCCTTC----------CHHHHHHHHGGGSCEEEEECCBCTTTSSB---------CSE---EEEEESSHHHHHH
T ss_pred CCEEEEeCCCCCC----------CHHHHHHHHHhcCCEEEEEEEecCCCCCc---------ceE---EEEEECCHHHHHH
Confidence 3479999999887 88999999999999999999876544432 377 9999999999999
Q ss_pred HHHHhcCccceecCceeEEEE
Q 019393 261 TLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 261 AM~aLrGmKL~~kGk~l~a~i 281 (341)
|++.|.|..+ .|+.+.+.+
T Consensus 84 Ai~~l~g~~~--~g~~l~V~~ 102 (110)
T 1oo0_B 84 AKEALNGAEI--MGQTIQVDW 102 (110)
T ss_dssp HHHHHTTCEE--TTEECEEEE
T ss_pred HHHHcCCCEE--CCcEEEEEE
Confidence 9999999988 787665543
No 22
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.95 E-value=2.1e-09 Score=82.49 Aligned_cols=77 Identities=18% Similarity=0.366 Sum_probs=64.8
Q ss_pred CCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeee-eecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHH
Q 019393 181 PDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNL-NVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFY 259 (341)
Q Consensus 181 PDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnv-DIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~ 259 (341)
.-||||.|||..+ +++.|+.+|++||+|..| .|+.+...+.. .|+ |||+|....+..
T Consensus 5 ~~~l~V~nLp~~~----------t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~---------~g~---afV~f~~~~~A~ 62 (96)
T 1x5t_A 5 SSGIFIGNLDPEI----------DEKLLYDTFSAFGVILQTPKIMRDPDTGNS---------KGY---AFINFASFDASD 62 (96)
T ss_dssp CCEEEEECCCTTC----------CHHHHHHHHHTTSCBSSCCEECCCTTTCSC---------CSE---EEEEBSSHHHHH
T ss_pred CCEEEEeCCCCCC----------CHHHHHHHHHhcCCeeEEEEEEEcCCCCCc---------CeE---EEEEECCHHHHH
Confidence 3599999999988 899999999999999999 99876444432 367 999999999999
Q ss_pred HHHHHhcCccceecCceeEEEE
Q 019393 260 NTLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 260 kAM~aLrGmKL~~kGk~l~a~i 281 (341)
+||+.|.|..+ .|+.+.+.+
T Consensus 63 ~A~~~l~g~~~--~g~~l~v~~ 82 (96)
T 1x5t_A 63 AAIEAMNGQYL--CNRPITVSY 82 (96)
T ss_dssp HHHHTTTTCEE--TTEECEEEE
T ss_pred HHHHHcCCCEE--CCEEEEEEE
Confidence 99999999998 787655443
No 23
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.95 E-value=5.5e-09 Score=81.55 Aligned_cols=79 Identities=18% Similarity=0.302 Sum_probs=66.7
Q ss_pred CCCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchH
Q 019393 178 KQEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRD 257 (341)
Q Consensus 178 geRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~ 257 (341)
...+-||||.|||..+ +++.|+.+|++||+|..|.|+.+...++. .|+ |||+|....+
T Consensus 12 ~~~~~~l~V~nlp~~~----------t~~~l~~~F~~~G~i~~v~i~~~~~~~~~---------~g~---afV~f~~~~~ 69 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKV----------SEPLLWELFLQAGPVVNTHMPKDRVTGQH---------QGY---GFVEFLSEED 69 (105)
T ss_dssp CCTTTEEEEECCCTTC----------CHHHHHHHHHTTSCEEEEECCBCSSSCSB---------CSC---EEEEESSHHH
T ss_pred CCCCCEEEEeCCCCCC----------CHHHHHHHHHhcCCeEEEEEEecCCCCcC---------CcE---EEEEECCHHH
Confidence 4556799999999887 88999999999999999999887544432 367 9999999999
Q ss_pred HHHHHHHhcCccceecCceeEEE
Q 019393 258 FYNTLKVLCGRSMQKQGSQLKAD 280 (341)
Q Consensus 258 F~kAM~aLrGmKL~~kGk~l~a~ 280 (341)
..+|++.|.|..+ .|+.+.+.
T Consensus 70 a~~A~~~l~g~~~--~g~~l~v~ 90 (105)
T 1x5u_A 70 ADYAIKIMDMIKL--YGKPIRVN 90 (105)
T ss_dssp HHHHHHHSSSCBC--SSCBCEEE
T ss_pred HHHHHHHhCCCeE--CCeEEEEE
Confidence 9999999999988 78765443
No 24
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=98.95 E-value=2e-09 Score=82.44 Aligned_cols=81 Identities=16% Similarity=0.283 Sum_probs=66.5
Q ss_pred CCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHH
Q 019393 179 QEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDF 258 (341)
Q Consensus 179 eRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F 258 (341)
...-||||.|||..+ +++.|+.+|++||+|.+|.|+.+.. ++ ..|+ |||+|....+.
T Consensus 14 ~~~~~l~v~nlp~~~----------~~~~l~~~F~~~G~i~~v~i~~~~~-g~---------~~g~---afV~f~~~~~a 70 (95)
T 2ywk_A 14 EADRTVFVGNLEARV----------REEILYELFLQAGPLTKVTICKDRE-GK---------PKSF---GFVCFKHPESV 70 (95)
T ss_dssp TGGGEEEEECCCTTC----------CHHHHHHHHGGGSCEEEEEEEECTT-SC---------EEEE---EEEEESSTHHH
T ss_pred CCCCEEEEECCCCCC----------CHHHHHHHHHhcCCEEEEEEEECCC-CC---------CceE---EEEEECCHHHH
Confidence 445699999999887 8899999999999999999998642 32 2366 99999999999
Q ss_pred HHHHHHhcCccceecCceeEEEEEEeeccc
Q 019393 259 YNTLKVLCGRSMQKQGSQLKADYEVTWDKD 288 (341)
Q Consensus 259 ~kAM~aLrGmKL~~kGk~l~a~ikV~fD~t 288 (341)
.+||+.|.|..+ .|+.+ +|.|.++
T Consensus 71 ~~A~~~l~g~~~--~g~~l----~V~~a~~ 94 (95)
T 2ywk_A 71 SYAIALLNGIRL--YGRPI----NVSGPSS 94 (95)
T ss_dssp HHHHHHHTTCEE--TTEEC----EEECCCC
T ss_pred HHHHHHhCCCEE--CCCEE----EEEEcCC
Confidence 999999999988 67655 4555544
No 25
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.93 E-value=6.5e-09 Score=81.69 Aligned_cols=82 Identities=21% Similarity=0.278 Sum_probs=67.7
Q ss_pred CCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHH
Q 019393 179 QEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDF 258 (341)
Q Consensus 179 eRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F 258 (341)
...-||||.|||..+ +++.|+.+|++||+|..|.|+.+...+.. .|+ |||+|....+.
T Consensus 13 ~~~~~l~V~nLp~~~----------t~~~l~~~F~~~G~i~~v~i~~~~~~g~~---------~g~---afV~f~~~~~A 70 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDS----------EEEALGEVLQQFGDLKYVRVVLHPDTEHS---------KGC---AFAQFMTQEAA 70 (111)
T ss_dssp CCCCCEEEESCCTTC----------CHHHHHHHHHTTSCEEEEECCBCSSSCCB---------CSE---EEEEESSHHHH
T ss_pred CCCCEEEEECCCCCC----------CHHHHHHHHHhcCCeEEEEEEecCCCCCC---------ccE---EEEEECCHHHH
Confidence 445699999999887 89999999999999999999987544432 377 99999999999
Q ss_pred HHHHHHhc------CccceecCceeEEEEEEeeccc
Q 019393 259 YNTLKVLC------GRSMQKQGSQLKADYEVTWDKD 288 (341)
Q Consensus 259 ~kAM~aLr------GmKL~~kGk~l~a~ikV~fD~t 288 (341)
.+||++|. |..+ .|+.+ +|.|-+.
T Consensus 71 ~~A~~~~~~~~~~~~~~~--~g~~l----~v~~a~~ 100 (111)
T 1x4h_A 71 QKCLAAASLEAEGGGLKL--DGRQL----KVDLAVT 100 (111)
T ss_dssp HHHHHHHCTTTTTCCEES--SSCEE----EEECCCC
T ss_pred HHHHHHhccccccCCcEE--cCEEE----EEEECCC
Confidence 99999999 8887 78765 4555443
No 26
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=98.93 E-value=3.9e-09 Score=85.13 Aligned_cols=76 Identities=22% Similarity=0.464 Sum_probs=65.3
Q ss_pred CeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHH
Q 019393 182 DTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNT 261 (341)
Q Consensus 182 DTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kA 261 (341)
-||||.|||..+ +++.|+.+|++||.|..|.|+.+...+.. .|+ |||+|....+..+|
T Consensus 23 ~~l~V~nlp~~~----------t~~~l~~~F~~~G~i~~v~i~~~~~~~~~---------~g~---afV~f~~~~~a~~A 80 (126)
T 3ex7_B 23 WILFVTGVHEEA----------TEEDIHDKFAEYGEIKNIHLNLDRRTGYL---------KGY---TLVEYETYKEAQAA 80 (126)
T ss_dssp EEEEEESCCTTC----------CHHHHHHHHHTTSCEEEEECCBCTTTSSB---------CSC---EEEEESSHHHHHHH
T ss_pred CEEEEeCCCCCC----------CHHHHHHHHHhcCCeEEEEEEecCCCCcc---------ceE---EEEEECCHHHHHHH
Confidence 489999999877 89999999999999999999987544432 367 99999999999999
Q ss_pred HHHhcCccceecCceeEEEE
Q 019393 262 LKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 262 M~aLrGmKL~~kGk~l~a~i 281 (341)
|++|.|..+ .|+.+.+.+
T Consensus 81 ~~~l~g~~~--~g~~l~v~~ 98 (126)
T 3ex7_B 81 MEGLNGQDL--MGQPISVDW 98 (126)
T ss_dssp HHHHTTCBS--SSSBCEEEE
T ss_pred HHHhCCCee--CCeEEEEEE
Confidence 999999998 888766554
No 27
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.93 E-value=6.3e-09 Score=81.29 Aligned_cols=80 Identities=21% Similarity=0.421 Sum_probs=66.3
Q ss_pred CCCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCC-CCCCCCCCCCCCCcccceeEEEEEEeccch
Q 019393 178 KQEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAED-DDPGKDADEDGGDIISGLHCKIVVQFEKYR 256 (341)
Q Consensus 178 geRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~-Dpyr~~~~~~~g~~~~gL~feayVQy~ey~ 256 (341)
....-||||.|||..+ +++.|+.+|++||+|..|.|+.+ ...+. ..|+ |||+|....
T Consensus 12 ~~~~~~l~V~nlp~~~----------t~~~l~~~F~~~G~i~~v~i~~~~~~~~~---------~~g~---afV~f~~~~ 69 (107)
T 2cph_A 12 KQTTSKILVRNIPFQA----------NQREIRELFSTFGELKTVRLPKKMTGTGA---------HRGF---GFVDFITKQ 69 (107)
T ss_dssp SSCCCCEEEESCCTTC----------CHHHHHHHHHTTSCEEEEECCCCCSSSCS---------SCSE---EEEEESSHH
T ss_pred CCCCCEEEEeCCCCcC----------CHHHHHHHHHccCCeEEEEEecCCCCCCC---------cCce---EEEEECCHH
Confidence 4556799999999887 89999999999999999999877 33333 2367 999999999
Q ss_pred HHHHHHHHh-cCccceecCceeEEEE
Q 019393 257 DFYNTLKVL-CGRSMQKQGSQLKADY 281 (341)
Q Consensus 257 ~F~kAM~aL-rGmKL~~kGk~l~a~i 281 (341)
+..+||+.| .|..+ .|+.+.+.+
T Consensus 70 ~a~~A~~~l~~~~~~--~g~~l~v~~ 93 (107)
T 2cph_A 70 DAKKAFNALCHSTHL--YGRRLVLEW 93 (107)
T ss_dssp HHHHHHHHHHTCCBS--SSCBCEEEE
T ss_pred HHHHHHHHhccCCeE--CCCEEEEEe
Confidence 999999999 89988 687655443
No 28
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.92 E-value=3.8e-09 Score=82.15 Aligned_cols=72 Identities=17% Similarity=0.262 Sum_probs=62.1
Q ss_pred CeEEEcCCccccccCCCCCCCCcHHHHH----HHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchH
Q 019393 182 DTIVIKGVPSRWFAEPRVSSKPSMLVTH----TVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRD 257 (341)
Q Consensus 182 DTI~l~gLP~rWFa~~~~s~kPSE~vl~----~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~ 257 (341)
-||||.|||..+ +++.|+ .+|++||+|..|.|+.+... .|+ |||+|....+
T Consensus 10 ~~l~V~nL~~~~----------~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~------------rg~---afV~f~~~~~ 64 (96)
T 2dgx_A 10 ADVQVSNIDYRL----------SRKELQQLLQEAFARHGKVKSVELSPHTDY------------QLK---AVVQMENLQD 64 (96)
T ss_dssp EEEEEESCCTTS----------CHHHHHHHHHHHHHHHSCEEEEEECSCCST------------TCC---EEEEESSHHH
T ss_pred CEEEEECCCCCC----------CHHHHHHHHHHhccccCcEEEEEEEeCCCC------------CeE---EEEEECCHHH
Confidence 489999999887 788888 99999999999999986433 155 9999999999
Q ss_pred HHHHHHHhcCccceecCceeEEE
Q 019393 258 FYNTLKVLCGRSMQKQGSQLKAD 280 (341)
Q Consensus 258 F~kAM~aLrGmKL~~kGk~l~a~ 280 (341)
..+|+++|.|..+ .|+.+.++
T Consensus 65 A~~Ai~~l~g~~~--~gr~l~V~ 85 (96)
T 2dgx_A 65 AIGAVNSLHRYKI--GSKKILVS 85 (96)
T ss_dssp HHHHHHHHTTEEE--TTEEEEEE
T ss_pred HHHHHHHhCCCEE--CCeEEEEE
Confidence 9999999999988 78765544
No 29
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=98.92 E-value=3.1e-09 Score=82.53 Aligned_cols=80 Identities=20% Similarity=0.434 Sum_probs=67.9
Q ss_pred CCCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceee--------eeecCCCCCCCCCCCCCCCcccceeEEEE
Q 019393 178 KQEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRN--------LNVAEDDDPGKDADEDGGDIISGLHCKIV 249 (341)
Q Consensus 178 geRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRn--------vDIP~~Dpyr~~~~~~~g~~~~gL~feay 249 (341)
....-||||.|||..+ +++.|+.+|++||.|.. |.|+.+...++ ..|+ ||
T Consensus 10 ~~~~~~l~V~nLp~~~----------t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~---------~~G~---af 67 (99)
T 2la6_A 10 HSDNNTIFVQGLGENV----------TIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGK---------LKGE---AT 67 (99)
T ss_dssp CCCCSEEEEECCCSSC----------CHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCS---------EEEE---EE
T ss_pred CCCCCEEEEeCCCCCC----------CHHHHHHHHHHhCCEeeccccccccEEEEecCCCCC---------eeeE---EE
Confidence 3556799999999887 89999999999999999 99988754433 2366 99
Q ss_pred EEeccchHHHHHHHHhcCccceecCceeEEEE
Q 019393 250 VQFEKYRDFYNTLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 250 VQy~ey~~F~kAM~aLrGmKL~~kGk~l~a~i 281 (341)
|+|....+..+|+++|.|..+ .|+.+.+.+
T Consensus 68 V~f~~~~~a~~Ai~~l~g~~~--~g~~l~V~~ 97 (99)
T 2la6_A 68 VSFDDPPSAKAAIDWFDGKEF--SGNPIKVSF 97 (99)
T ss_dssp EEBSSHHHHHHHHHHHTTCBS--SSSBCEEEE
T ss_pred EEECCHHHHHHHHHHhCCCEe--CCcEEEEEe
Confidence 999999999999999999988 788776654
No 30
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=98.92 E-value=2e-09 Score=86.64 Aligned_cols=73 Identities=21% Similarity=0.272 Sum_probs=62.6
Q ss_pred CeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHH
Q 019393 182 DTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNT 261 (341)
Q Consensus 182 DTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kA 261 (341)
-+|||.|||..| +|+.|+.+|++||+|..|.|+.+.- . ..|+ |||+|....+..+|
T Consensus 6 ~~lfV~nLp~~~----------te~~L~~~F~~~G~v~~v~i~~d~~--~---------~kg~---afV~f~~~~~A~~A 61 (115)
T 4f25_A 6 GNIFIKNLDKSI----------DNKALYDTFSAFGNILSCKVVCDEN--G---------SKGY---GFVHFETQEAAERA 61 (115)
T ss_dssp CEEEEESCCTTC----------CHHHHHHHHGGGSCEEEEEEEEETT--E---------EEEE---EEEEESCHHHHHHH
T ss_pred CEEEECCCCCCC----------CHHHHHHHHhccCCEEEEEEeecCC--C---------CCce---EEEEECCHHHHHHH
Confidence 489999999998 8999999999999999999987521 1 2366 99999999999999
Q ss_pred HHHhcCccceecCceeEEE
Q 019393 262 LKVLCGRSMQKQGSQLKAD 280 (341)
Q Consensus 262 M~aLrGmKL~~kGk~l~a~ 280 (341)
+++|.|..| .|+.+.+.
T Consensus 62 i~~l~~~~~--~g~~i~V~ 78 (115)
T 4f25_A 62 IEKMNGMLL--NDRKVFVG 78 (115)
T ss_dssp HHHHTTCEE--TTEECEEE
T ss_pred HHHcCCCEE--CCEEEEEE
Confidence 999999988 78765543
No 31
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=98.92 E-value=3.1e-09 Score=84.47 Aligned_cols=83 Identities=20% Similarity=0.338 Sum_probs=68.0
Q ss_pred CCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHH
Q 019393 179 QEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDF 258 (341)
Q Consensus 179 eRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F 258 (341)
...-||||.|||..+ +++.|+.+|+.||.|..|.|+.+...+. ..|+ |||+|....+.
T Consensus 13 ~~~~~l~V~nlp~~~----------t~~~l~~~F~~~G~i~~v~i~~~~~~~~---------~~g~---afV~f~~~~~a 70 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEI----------TTEDIKAAFAPFGRISDARVVKDMATGK---------SKGY---GFVSFFNKWDA 70 (115)
T ss_dssp TTCEEEEEESCCTTC----------CHHHHHHHHGGGSCEEEEEEEECTTTCC---------EEEE---EEEEESSHHHH
T ss_pred CCCcEEEEeCCCCCC----------CHHHHHHHHHhcCCeEEEEEEEcCCCCC---------cceE---EEEEECCHHHH
Confidence 445699999999988 8899999999999999999987643332 2366 99999999999
Q ss_pred HHHHHHhcCccceecCceeEEEEEEeecccC
Q 019393 259 YNTLKVLCGRSMQKQGSQLKADYEVTWDKDG 289 (341)
Q Consensus 259 ~kAM~aLrGmKL~~kGk~l~a~ikV~fD~tk 289 (341)
.+||++|.|..+ .|+. |+|.|-+.+
T Consensus 71 ~~A~~~l~g~~~--~g~~----l~V~~a~~~ 95 (115)
T 2dgo_A 71 ENAIQQMGGQWL--GGRQ----IRTNWATRK 95 (115)
T ss_dssp HHHHHHTTTCEE--TTEE----CEEEESSCC
T ss_pred HHHHHHhCCCEE--CCEE----EEEEEccCC
Confidence 999999999887 7764 556666544
No 32
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=98.91 E-value=4.1e-09 Score=79.56 Aligned_cols=74 Identities=18% Similarity=0.251 Sum_probs=63.1
Q ss_pred CeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHH
Q 019393 182 DTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNT 261 (341)
Q Consensus 182 DTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kA 261 (341)
-||||.|||..+ +++-|+.+|++||+|..|.|+.+...++. .|+ |||+|....+..+|
T Consensus 7 ~~l~V~nlp~~~----------t~~~l~~~F~~~G~i~~v~i~~~~~~~~~---------~g~---afV~f~~~~~a~~a 64 (89)
T 3ucg_A 7 RSIYVGNVDYGA----------TAEELEAHFHGCGSVNRVTILCDKFSGHP---------KGF---AYIEFSDKESVRTS 64 (89)
T ss_dssp TEEEEESCCTTC----------CHHHHHHHHGGGCCEEEEEEEESCSSSSC---------CEE---EEEEESSTHHHHHH
T ss_pred CEEEEeCCCCCC----------CHHHHHHHHHhCCCEEEEEEEecCCCCCc---------ceE---EEEEECCHHHHHHH
Confidence 489999999888 88999999999999999999977544432 266 99999999999999
Q ss_pred HHHhcCccceecCceeEEE
Q 019393 262 LKVLCGRSMQKQGSQLKAD 280 (341)
Q Consensus 262 M~aLrGmKL~~kGk~l~a~ 280 (341)
+ .|.|..+ .|+.+.+.
T Consensus 65 ~-~~~g~~~--~g~~l~V~ 80 (89)
T 3ucg_A 65 L-ALDESLF--RGRQIKVI 80 (89)
T ss_dssp G-GGTTCEE--TTEECEEE
T ss_pred H-hcCCCEE--CCcEEEEE
Confidence 9 9999998 78765543
No 33
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=98.91 E-value=1.5e-09 Score=81.59 Aligned_cols=75 Identities=25% Similarity=0.399 Sum_probs=60.6
Q ss_pred eEEEcCCccccccCCCCCCCC--cHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHH
Q 019393 183 TIVIKGVPSRWFAEPRVSSKP--SMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYN 260 (341)
Q Consensus 183 TI~l~gLP~rWFa~~~~s~kP--SE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~k 260 (341)
||+|.|||... .++- +++.|+.+|++||+|..|.|| +..++ ..|+ |||+|....+..+
T Consensus 3 ~l~V~nLp~~~------~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~---------~~g~---afV~f~~~~~A~~ 62 (81)
T 2krb_A 3 VIVVDNVPQVG------PDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGK---------TKGY---IFLEYASPAHAVD 62 (81)
T ss_dssp EEEEESCCCCC------TTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTB---------CCCE---EEEEESSHHHHHH
T ss_pred EEEEeCCCCCc------HHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCc---------EeEE---EEEEECCHHHHHH
Confidence 89999999544 2222 678899999999999999998 23332 2377 9999999999999
Q ss_pred HHHHhcCccceecCc-eeEE
Q 019393 261 TLKVLCGRSMQKQGS-QLKA 279 (341)
Q Consensus 261 AM~aLrGmKL~~kGk-~l~a 279 (341)
|+++|.|..+ .|+ .+.+
T Consensus 63 Ai~~lng~~~--~g~~~l~V 80 (81)
T 2krb_A 63 AVKNADGYKL--DKQHTFRV 80 (81)
T ss_dssp HHTTSSSCCC--SSSSCCCC
T ss_pred HHHHhcCccc--CCceeEEe
Confidence 9999999998 777 6654
No 34
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=98.91 E-value=4.6e-09 Score=82.13 Aligned_cols=80 Identities=16% Similarity=0.258 Sum_probs=65.8
Q ss_pred CCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHH
Q 019393 179 QEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDF 258 (341)
Q Consensus 179 eRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F 258 (341)
..+-||||.|||..+ +++.|+.+|++||+|..|.|+.+...++. .|+ |||+|....+.
T Consensus 11 ~~~~~l~V~nlp~~~----------t~~~l~~~F~~~G~i~~v~i~~~~~~g~~---------~g~---afV~f~~~~~A 68 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNL----------DEKDLKPLFEEFGKIYELTVLKDRFTGMH---------KGC---AFLTYCERESA 68 (106)
T ss_dssp TTCEEEEEESCCTTC----------CHHHHHHHHHHHSCCCEEECCCCSSSCSC---------CSE---EEEEESSHHHH
T ss_pred CCCCEEEEeCCCCCC----------CHHHHHHHHHhcCCeeEEEEEecCCCCCc---------ceE---EEEEECCHHHH
Confidence 445689999999888 89999999999999999999876444432 367 99999999999
Q ss_pred HHHHHHhcCcccee-cCceeEEE
Q 019393 259 YNTLKVLCGRSMQK-QGSQLKAD 280 (341)
Q Consensus 259 ~kAM~aLrGmKL~~-kGk~l~a~ 280 (341)
.+|+++|.|..++. .|+.+.+.
T Consensus 69 ~~A~~~l~g~~~~~~~g~~l~v~ 91 (106)
T 2dgp_A 69 LKAQSALHEQKTLPGMNRPIQVK 91 (106)
T ss_dssp HHHHHHHTTTCCCTTCSSCCEEE
T ss_pred HHHHHHhcCCcccCCCCceEEEE
Confidence 99999999998754 35655443
No 35
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.90 E-value=8.9e-09 Score=79.74 Aligned_cols=78 Identities=14% Similarity=0.327 Sum_probs=65.5
Q ss_pred CCCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchH
Q 019393 178 KQEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRD 257 (341)
Q Consensus 178 geRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~ 257 (341)
...+-||||.|||..+ +++.|+.+|+.||+|..|.|+.+...++. .|+ |||+|....+
T Consensus 7 ~~~~~~l~V~nlp~~~----------t~~~l~~~F~~~G~i~~v~i~~~~~~~~~---------~g~---afV~f~~~~~ 64 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNC----------GETELREYFKKFGVVTEVVMIYDAEKQRP---------RGF---GFITFEDEQS 64 (99)
T ss_dssp CSSCCEEEEESCCSSC----------CHHHHHHHHSSSSCEEEEEECCCTTTCSC---------CSE---EEEEESSHHH
T ss_pred CCCCCEEEEeCCCCCC----------CHHHHHHHHHhcCCeEEEEEEeCCCCCCC---------Cce---EEEEECCHHH
Confidence 4566799999999888 88999999999999999999876444332 377 9999999999
Q ss_pred HHHHHHHhcCccceecCceeEEE
Q 019393 258 FYNTLKVLCGRSMQKQGSQLKAD 280 (341)
Q Consensus 258 F~kAM~aLrGmKL~~kGk~l~a~ 280 (341)
..+||+ |.|..+ .|+.+.+.
T Consensus 65 a~~A~~-~~~~~~--~g~~l~V~ 84 (99)
T 2dgs_A 65 VDQAVN-MHFHDI--MGKKVEVK 84 (99)
T ss_dssp HHHHHH-HCCCBS--SSCBCEEE
T ss_pred HHHHHH-hCCCEE--CCeEEEEE
Confidence 999999 999988 78765543
No 36
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=98.90 E-value=4.3e-09 Score=83.95 Aligned_cols=79 Identities=18% Similarity=0.234 Sum_probs=66.5
Q ss_pred CCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHH
Q 019393 179 QEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDF 258 (341)
Q Consensus 179 eRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F 258 (341)
...-||||.|||..+ +++.|+.+|++||+|..|.|+.+...++. .|+ |||+|....+.
T Consensus 38 ~~~~~l~V~nlp~~~----------t~~~l~~~F~~~G~i~~~~i~~~~~~g~~---------~g~---afV~f~~~~~A 95 (118)
T 2khc_A 38 PEGCNLFIYHLPQEF----------TDTDLASTFLPFGNVISAKVFIDKQTSLS---------KCF---GFVSFDNPDSA 95 (118)
T ss_dssp CCSEEEEEECSCTTC----------CHHHHHHHTTTSCEEEEEEECCCSSSSCC---------CCE---EEEEEESSHHH
T ss_pred CCCCEEEEeCCCCCC----------CHHHHHHHHHhcCCEEEEEEEeCCCCCCc---------CcE---EEEEECCHHHH
Confidence 334689999999888 88999999999999999999876444332 367 99999999999
Q ss_pred HHHHHHhcCccceecCceeEEEE
Q 019393 259 YNTLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 259 ~kAM~aLrGmKL~~kGk~l~a~i 281 (341)
.+||+.|.|..+ .|+.+.+.+
T Consensus 96 ~~A~~~l~g~~~--~g~~l~V~~ 116 (118)
T 2khc_A 96 QVAIKAMNGFQV--GTKRLKVQL 116 (118)
T ss_dssp HHHHHHCCCCEE--TTEECCEEE
T ss_pred HHHHHHcCCCEE--CCEEEEEEe
Confidence 999999999887 788766554
No 37
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=98.90 E-value=4.9e-09 Score=82.10 Aligned_cols=79 Identities=19% Similarity=0.328 Sum_probs=67.5
Q ss_pred CCCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchH
Q 019393 178 KQEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRD 257 (341)
Q Consensus 178 geRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~ 257 (341)
....-||||.|||..+ +++.|+.+|++||+|..|.|+.+. .++ ..|+ |||+|....+
T Consensus 26 ~~~~~~l~V~nlp~~~----------t~~~l~~~F~~~G~i~~v~i~~~~-~g~---------~~g~---afV~f~~~~~ 82 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGV----------SDADIQELFAEFGTLKKAAVHYDR-SGR---------SLGT---ADVHFERKAD 82 (107)
T ss_dssp CCCSEEEEEESCCTTC----------CHHHHHHHHHTTSCEEEEEEEECT-TSC---------EEEE---EEEEESSHHH
T ss_pred CCCCCEEEEeCCCCCC----------CHHHHHHHHHhcCCeEEEEEEECC-CCC---------cceE---EEEEECCHHH
Confidence 4556699999999887 889999999999999999999874 333 2256 9999999999
Q ss_pred HHHHHHHhcCccceecCceeEEEE
Q 019393 258 FYNTLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 258 F~kAM~aLrGmKL~~kGk~l~a~i 281 (341)
..+|+++|.|..+ .|+.+.+.+
T Consensus 83 a~~A~~~l~g~~~--~g~~l~V~~ 104 (107)
T 3ulh_A 83 ALKAMKQYNGVPL--DGRPMNIQL 104 (107)
T ss_dssp HHHHHHHHTTCEE--TTEECEEEE
T ss_pred HHHHHHHhCCCEe--CCcEEEEEE
Confidence 9999999999998 888777665
No 38
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=5.6e-09 Score=81.03 Aligned_cols=78 Identities=18% Similarity=0.342 Sum_probs=65.5
Q ss_pred CCCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchH
Q 019393 178 KQEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRD 257 (341)
Q Consensus 178 geRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~ 257 (341)
...+-||||.|||..+ +++.|+.+|++||+|..|.|+.+. .++ ..|+ |||+|....+
T Consensus 14 ~~~~~~l~v~nlp~~~----------t~~~l~~~F~~~G~i~~v~i~~~~-~g~---------~~g~---afV~f~~~~~ 70 (100)
T 2do4_A 14 SLEKHKLFISGLPFSC----------TKEELEEICKAHGTVKDLRLVTNR-AGK---------PKGL---AYVEYENESQ 70 (100)
T ss_dssp CCCCSCEEEESCCTTC----------CHHHHHHHHTTTSCEEEEEEEECT-TSC---------EEEE---EEEEESSHHH
T ss_pred CCCCCEEEEeCCCCCC----------CHHHHHHHHHhCCCeEEEEEEECC-CCC---------EEeE---EEEEECCHHH
Confidence 3456799999999988 889999999999999999998864 333 2366 9999999999
Q ss_pred HHHHHHHhcCccceecCceeEEE
Q 019393 258 FYNTLKVLCGRSMQKQGSQLKAD 280 (341)
Q Consensus 258 F~kAM~aLrGmKL~~kGk~l~a~ 280 (341)
..+||+.|.|..+ .|+.+.+.
T Consensus 71 a~~A~~~l~g~~~--~g~~l~v~ 91 (100)
T 2do4_A 71 ASQAVMKMDGMTI--KENIIKVA 91 (100)
T ss_dssp HHHHHHHHTTEES--SSCEEEEE
T ss_pred HHHHHHHhCCCEE--CCEEEEEE
Confidence 9999999999888 78765543
No 39
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.90 E-value=6.5e-09 Score=82.64 Aligned_cols=74 Identities=19% Similarity=0.344 Sum_probs=62.9
Q ss_pred CeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHH
Q 019393 182 DTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNT 261 (341)
Q Consensus 182 DTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kA 261 (341)
-||||.|||..+ +++.|+.+|+.||.|.+|.|+.+...+.. .|+ |||+|....+..+|
T Consensus 26 ~~l~V~nlp~~~----------t~~~l~~~F~~~G~i~~v~i~~~~~~g~~---------~g~---afV~f~~~~~a~~A 83 (114)
T 2cq4_A 26 RTVFCMQLAARI----------RPRDLEDFFSAVGKVRDVRIISDRNSRRS---------KGI---AYVEFCEIQSVPLA 83 (114)
T ss_dssp TEEEEESCCTTC----------CHHHHHHHHTTTSCEEEEEECCSCCSSSC---------CCC---EEEEESCGGGHHHH
T ss_pred CEEEEeCCCCCC----------CHHHHHHHHHhCCCEeEEEEEecCCCCcc---------CcE---EEEEeCcHHHHHHH
Confidence 389999999887 88999999999999999999876544432 367 99999999999999
Q ss_pred HHHhcCccceecCceeEEE
Q 019393 262 LKVLCGRSMQKQGSQLKAD 280 (341)
Q Consensus 262 M~aLrGmKL~~kGk~l~a~ 280 (341)
+ .|.|..+ .|+.+.+.
T Consensus 84 ~-~l~g~~~--~g~~l~V~ 99 (114)
T 2cq4_A 84 I-GLTGQRL--LGVPIIVQ 99 (114)
T ss_dssp H-HHTTEEE--TTEEEEEE
T ss_pred H-HcCCCEe--CCeEEEEE
Confidence 9 9999988 78655443
No 40
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.89 E-value=1.2e-08 Score=79.50 Aligned_cols=81 Identities=19% Similarity=0.375 Sum_probs=67.1
Q ss_pred CCCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchH
Q 019393 178 KQEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRD 257 (341)
Q Consensus 178 geRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~ 257 (341)
...+-||||.|||..+ +++.|+.+|++||+|..|.|+.+... ..|+ |||+|....+
T Consensus 12 ~~~~~~l~V~nlp~~~----------t~~~l~~~F~~~G~i~~v~i~~~~~~-----------~~g~---afV~f~~~~~ 67 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDV----------TEVLILQLFSQIGPCKSCKMITEHTS-----------NDPY---CFVEFYEHRD 67 (103)
T ss_dssp SCCCCEEEEESCCTTC----------CHHHHHHHHHHHSCEEEEEEECCCCS-----------SCCE---EEEEESSHHH
T ss_pred CCCCCEEEEeCCCccC----------CHHHHHHHHHhcCCEeEEEEEecCCC-----------CCCE---EEEEECCHHH
Confidence 4556799999999887 89999999999999999999987221 1266 9999999999
Q ss_pred HHHHHHHhcCccceecCceeEEEEEEeeccc
Q 019393 258 FYNTLKVLCGRSMQKQGSQLKADYEVTWDKD 288 (341)
Q Consensus 258 F~kAM~aLrGmKL~~kGk~l~a~ikV~fD~t 288 (341)
..+||+.|.|..+ .|+. |+|.|-+.
T Consensus 68 a~~A~~~l~g~~~--~g~~----l~V~~a~~ 92 (103)
T 2cqi_A 68 AAAALAAMNGRKI--LGKE----VKVNWATT 92 (103)
T ss_dssp HHHHHHHHTTEEE--TTEE----EEEEECCC
T ss_pred HHHHHHHhCCCCc--CCCe----EEEEECCC
Confidence 9999999999998 6765 45566554
No 41
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=98.89 E-value=1.5e-09 Score=83.36 Aligned_cols=75 Identities=13% Similarity=0.159 Sum_probs=63.2
Q ss_pred eEEEcCCccccccCCCCCCCCcHHHHHHHhhccC--ceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHH
Q 019393 183 TIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFG--KIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYN 260 (341)
Q Consensus 183 TI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FG--kIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~k 260 (341)
||+|.|||..+ +++-|+.+|++|| +|..|.|+.+...++. .|+ |||+|....+..+
T Consensus 3 ~l~V~nL~~~~----------t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~---------kG~---afV~f~~~~~a~~ 60 (90)
T 3p5t_L 3 ALYIGNLTWWT----------TDEDLTEAVHSLGVNDILEIKFFENRANGQS---------KGF---ALVGVGSEASSKK 60 (90)
T ss_dssp -CEEESCCTTC----------CHHHHHHHHHTTTCCCCCCEEEEECTTTCCE---------EEE---EEECC-CHHHHHH
T ss_pred EEEEeCCCCCC----------CHHHHHHHHHHhCCCceEEEEEEecCCCCcc---------CcE---EEEEECCHHHHHH
Confidence 79999999887 8999999999999 9999999987544442 377 9999999999999
Q ss_pred HHHHhcCccceecCceeEEEE
Q 019393 261 TLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 261 AM~aLrGmKL~~kGk~l~a~i 281 (341)
||++|.|..+ .|+.+.+.+
T Consensus 61 Ai~~l~g~~~--~gr~i~V~~ 79 (90)
T 3p5t_L 61 LMDLLPKREL--HGQNPVVTP 79 (90)
T ss_dssp HHHHGGGSCS--SSCCCEECC
T ss_pred HHHHcCCCee--CCEEEEEEE
Confidence 9999999998 888766543
No 42
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.89 E-value=3.5e-09 Score=82.62 Aligned_cols=78 Identities=18% Similarity=0.244 Sum_probs=65.8
Q ss_pred CCCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchH
Q 019393 178 KQEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRD 257 (341)
Q Consensus 178 geRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~ 257 (341)
....-||||.|||..+ +++.|+.+|++||+|..|.|+.+ .+. ..|+ |||+|....+
T Consensus 12 ~~~~~~l~V~nlp~~~----------t~~~l~~~F~~~G~i~~v~i~~~--~g~---------~~g~---afV~f~~~~~ 67 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGI----------DDERLRKAFSPFGTITSAKVMME--GGR---------SKGF---GFVCFSSPEE 67 (103)
T ss_dssp CSSCCCEEEECCCTTC----------CHHHHHHTTTTTSCEEEEEEEEC--SSS---------EEEE---EEEEESSHHH
T ss_pred CCCCCEEEEeCCCCCC----------CHHHHHHHHHhcCCEEEEEEEcC--CCC---------cCEE---EEEEECCHHH
Confidence 3456699999999988 88999999999999999999976 222 2366 9999999999
Q ss_pred HHHHHHHhcCccceecCceeEEEE
Q 019393 258 FYNTLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 258 F~kAM~aLrGmKL~~kGk~l~a~i 281 (341)
..+||+.|.|..+ .|+.+.+.+
T Consensus 68 A~~A~~~l~g~~~--~g~~l~V~~ 89 (103)
T 2d9p_A 68 ATKAVTEMNGRIV--ATKPLYVAL 89 (103)
T ss_dssp HHHHHHHHTTCBS--SSSBCEEEE
T ss_pred HHHHHHHhCCCEe--CCcEEEEEE
Confidence 9999999999998 787765543
No 43
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=98.89 E-value=2.9e-09 Score=84.80 Aligned_cols=81 Identities=15% Similarity=0.216 Sum_probs=66.8
Q ss_pred CCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHH
Q 019393 180 EPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFY 259 (341)
Q Consensus 180 RPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~ 259 (341)
..-||||.|||..+ +++.|+.+|+.||+|..|.|+.+...++ ..|+ |||+|....+..
T Consensus 24 ~~~~l~V~nLp~~~----------t~~~l~~~F~~~G~i~~v~i~~~~~~g~---------~~g~---afV~f~~~~~a~ 81 (115)
T 2cpz_A 24 EGANLFIYHLPQEF----------GDQDLLQMFMPFGNVVSAKVFIDKQTNL---------SKCF---GFVSYDNPVSAQ 81 (115)
T ss_dssp TTCCEEEESCCSSC----------CHHHHHHHHGGGSCCSEEEEEECSSSCS---------EEEE---EEEECSSHHHHH
T ss_pred CCcEEEEeCCCCCC----------CHHHHHHHHHhcCCeEEEEEEECCCCCC---------cCcc---EEEEECCHHHHH
Confidence 34699999999988 8899999999999999999988654433 2366 999999999999
Q ss_pred HHHHHhcCccceecCceeEEEEEEeeccc
Q 019393 260 NTLKVLCGRSMQKQGSQLKADYEVTWDKD 288 (341)
Q Consensus 260 kAM~aLrGmKL~~kGk~l~a~ikV~fD~t 288 (341)
+|++.|.|..+ .|+.+ +|.|-+.
T Consensus 82 ~A~~~l~g~~~--~g~~l----~V~~a~~ 104 (115)
T 2cpz_A 82 AAIQSMNGFQI--GMKRL----KVQLKRS 104 (115)
T ss_dssp HHHHHHTTCEE--TTEEC----EEECCCC
T ss_pred HHHHHcCCCEE--CCEEE----EEEEcCC
Confidence 99999999888 77654 4555543
No 44
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.89 E-value=1.9e-09 Score=81.21 Aligned_cols=75 Identities=16% Similarity=0.181 Sum_probs=63.8
Q ss_pred CCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHH
Q 019393 179 QEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDF 258 (341)
Q Consensus 179 eRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F 258 (341)
..+-||||.|||..+ +++.|+.+|++||+|..|.|+.+...+.. .|+ |||+|....+.
T Consensus 3 ~~~~~l~v~nlp~~~----------t~~~l~~~f~~~G~i~~~~i~~~~~~~~~---------~g~---afV~f~~~~~a 60 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGT----------TDQDLVKLCQPYGKIVSTKAILDKTTNKC---------KGY---GFVDFDSPSAA 60 (85)
T ss_dssp CCCCEEEEESCCTTC----------CHHHHHTTSTTTSCEEEEEEECCSSSCSC---------CSE---EEEEESCHHHH
T ss_pred CCCcEEEEeCCCCCC----------CHHHHHHHHHhcCCeEEEEEEecCCCCCc---------CcE---EEEEECCHHHH
Confidence 345699999999888 88999999999999999999987544332 377 99999999999
Q ss_pred HHHHHHhcCccceecCcee
Q 019393 259 YNTLKVLCGRSMQKQGSQL 277 (341)
Q Consensus 259 ~kAM~aLrGmKL~~kGk~l 277 (341)
.+|+++|.|..+ +|+.+
T Consensus 61 ~~A~~~l~g~~~--~g~~~ 77 (85)
T 1x4e_A 61 QKAVTALKASGV--QAQMA 77 (85)
T ss_dssp HHHHHHHHHHTC--CEESC
T ss_pred HHHHHHhcCCeE--eeEEE
Confidence 999999999988 56544
No 45
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=98.89 E-value=1.6e-09 Score=83.00 Aligned_cols=78 Identities=18% Similarity=0.232 Sum_probs=64.6
Q ss_pred CCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHH
Q 019393 179 QEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDF 258 (341)
Q Consensus 179 eRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F 258 (341)
..+-||||.|||..+ +++.|+.+|++||.|..+.|+.++..++. .|+ |||+|....+.
T Consensus 13 ~~~~~l~V~nlp~~~----------t~~~l~~~F~~~G~i~~~~~~~~~~~g~~---------~g~---afV~f~~~~~a 70 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTV----------SIDEILDFFYGYQVIPGSVCLKYNEKGMP---------TGE---AMVAFESRDEA 70 (95)
T ss_dssp --CEEEEEECCCTTC----------CHHHHHHHTTTSCBCTTCCEEEECTTSCE---------EEE---EEEEESSHHHH
T ss_pred CCCCEEEEeCCCCCC----------CHHHHHHHHHhcCCccceEEEEeCCCCCE---------eeE---EEEEECCHHHH
Confidence 345799999999887 88999999999999999999887554432 266 99999999999
Q ss_pred HHHHHHhcCccceecCceeEEE
Q 019393 259 YNTLKVLCGRSMQKQGSQLKAD 280 (341)
Q Consensus 259 ~kAM~aLrGmKL~~kGk~l~a~ 280 (341)
.+||++|.|..+ .|+.+.++
T Consensus 71 ~~Ai~~l~g~~~--~gr~l~v~ 90 (95)
T 2ek1_A 71 TAAVIDLNDRPI--GSRKVKLS 90 (95)
T ss_dssp HHHHHHHTTCEE--TTEECEEE
T ss_pred HHHHHHhCCCeE--CCcEEEEE
Confidence 999999999988 78765443
No 46
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.89 E-value=2.9e-09 Score=83.03 Aligned_cols=79 Identities=18% Similarity=0.321 Sum_probs=65.4
Q ss_pred CCCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchH
Q 019393 178 KQEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRD 257 (341)
Q Consensus 178 geRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~ 257 (341)
....-||||.|||..+ +++.|+.+|++||+|..|.|+.+...+. ..|+ |||+|....+
T Consensus 12 ~~~~~~l~V~nlp~~~----------t~~~l~~~f~~~G~i~~v~i~~~~~~~~---------~~g~---afV~f~~~~~ 69 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDT----------RETDLQELFRPFGSISRIYLAKDKTTGQ---------SKGF---AFISFHRRED 69 (103)
T ss_dssp CSSSEEEEEESCCTTC----------CHHHHHTTSTTTCCEEEEEEEECSSSCS---------EEEE---EEEEESSHHH
T ss_pred CCCCCEEEEeCCCCCC----------CHHHHHHHHHhCCCeEEEEEeecCCCCc---------eeeE---EEEEECCHHH
Confidence 3445699999999887 8999999999999999999987644333 2366 9999999999
Q ss_pred HHHHHHHhcCccceecCceeEEE
Q 019393 258 FYNTLKVLCGRSMQKQGSQLKAD 280 (341)
Q Consensus 258 F~kAM~aLrGmKL~~kGk~l~a~ 280 (341)
..+||+.|.|..+ .|+.+.+.
T Consensus 70 A~~A~~~l~g~~~--~g~~l~v~ 90 (103)
T 2cq0_A 70 AARAIAGVSGFGY--DHLILNVE 90 (103)
T ss_dssp HHHHHHHTTTCEE--TTEECEEE
T ss_pred HHHHHHHcCCCee--CCcEEEEE
Confidence 9999999999988 77655443
No 47
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=98.88 E-value=6.9e-09 Score=84.54 Aligned_cols=79 Identities=15% Similarity=0.149 Sum_probs=67.2
Q ss_pred CeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHH
Q 019393 182 DTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNT 261 (341)
Q Consensus 182 DTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kA 261 (341)
-||||.|||... +|+.|+.+|++||+|.+|.|+.. .|+ |||+|++-.+..+|
T Consensus 22 ~~l~V~NLp~~~----------te~~L~~lF~~fG~V~~v~i~~~---------------kg~---AFVef~~~~~A~~A 73 (100)
T 3r27_A 22 PVVHIRGLIDGV----------VEADLVEALQEFGPISYVVVMPK---------------KRQ---ALVEFEDVLGACNA 73 (100)
T ss_dssp SEEEEESCCTTC----------CHHHHHHHHGGGSCEEEEEEETT---------------TTE---EEEEESSHHHHHHH
T ss_pred cEEEEeCCCCCC----------CHHHHHHHHhccCCEEEEEEEcC---------------CCE---EEEEECCHHHHHHH
Confidence 489999999877 89999999999999999999731 156 99999999999999
Q ss_pred HHHhcCccceecCceeEEEEEEeecccCCCc
Q 019393 262 LKVLCGRSMQKQGSQLKADYEVTWDKDGFFW 292 (341)
Q Consensus 262 M~aLrGmKL~~kGk~l~a~ikV~fD~tkhlS 292 (341)
++.|.|..+...|+. |.|.|=+.++++
T Consensus 74 v~~ln~~~~~i~Gr~----i~V~~S~~k~l~ 100 (100)
T 3r27_A 74 VNYAADNQIYIAGHP----AFVNYSTSQKIS 100 (100)
T ss_dssp HHHHHHSCEEETTEE----EEEEECSCSCCC
T ss_pred HHHhcCCCceeCCcE----EEEEeccccccC
Confidence 999999988778985 456666766654
No 48
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.88 E-value=2.8e-09 Score=82.86 Aligned_cols=76 Identities=18% Similarity=0.381 Sum_probs=64.2
Q ss_pred CCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHH
Q 019393 181 PDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYN 260 (341)
Q Consensus 181 PDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~k 260 (341)
.-||||.|||..+ +++-|+.+|++||+|..|.|+.+...+. ..|+ |||+|....+..+
T Consensus 8 ~~~l~V~nlp~~~----------~~~~l~~~f~~~G~i~~~~i~~~~~~g~---------~~g~---afV~f~~~~~a~~ 65 (104)
T 1p1t_A 8 LRSVFVGNIPYEA----------TEEQLKDIFSEVGPVVSFRLVYDRETGK---------PKGY---GFCEYQDQETALS 65 (104)
T ss_dssp HSCEEEESCCTTS----------CHHHHHHHHHTTSCCSEEEEEEETTTTE---------EEEE---EEEECSCHHHHHH
T ss_pred ccEEEEeCCCCcC----------CHHHHHHHHHhcCCeeEEEEEeCCCCCc---------cceE---EEEEECCHHHHHH
Confidence 3599999999887 8899999999999999999987643332 2366 9999999999999
Q ss_pred HHHHhcCccceecCceeEEE
Q 019393 261 TLKVLCGRSMQKQGSQLKAD 280 (341)
Q Consensus 261 AM~aLrGmKL~~kGk~l~a~ 280 (341)
|+++|.|..+ .|+.+.+.
T Consensus 66 A~~~l~g~~~--~g~~l~v~ 83 (104)
T 1p1t_A 66 AMRNLNGREF--SGRALRVD 83 (104)
T ss_dssp HHHHSSSBSC--SSSCBEEE
T ss_pred HHHHhCCCee--CCcEEEEE
Confidence 9999999998 88876544
No 49
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=98.87 E-value=5e-09 Score=82.90 Aligned_cols=83 Identities=23% Similarity=0.368 Sum_probs=65.1
Q ss_pred CCeEEEcCCccccccCCCCCCCC--cHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHH
Q 019393 181 PDTIVIKGVPSRWFAEPRVSSKP--SMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDF 258 (341)
Q Consensus 181 PDTI~l~gLP~rWFa~~~~s~kP--SE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F 258 (341)
.-||+|.|||... .++- +++.|+.+|++||+|..|.|| ...++ ..|+ |||+|....+.
T Consensus 15 ~~~l~V~nLp~~~------~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~---------~~G~---afV~f~~~~~A 74 (105)
T 2nlw_A 15 DSVIVVDNVPQVG------PDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGK---------TKGY---IFLEYASPAHA 74 (105)
T ss_dssp CSEEEEESCCCCC------TTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTB---------SCCE---EEEEECSSSHH
T ss_pred CCEEEEeCCCcch------hhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCC---------eeeE---EEEEECCHHHH
Confidence 3489999999543 2222 678899999999999999998 23332 3377 99999999999
Q ss_pred HHHHHHhcCccceecCc-eeEEEEEEee
Q 019393 259 YNTLKVLCGRSMQKQGS-QLKADYEVTW 285 (341)
Q Consensus 259 ~kAM~aLrGmKL~~kGk-~l~a~ikV~f 285 (341)
.+|++.|.|..+ .|+ .+.+++--++
T Consensus 75 ~~Ai~~l~g~~~--~g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 75 VDAVKNADGYKL--DKQHTFRVNLFTDF 100 (105)
T ss_dssp HHHHHHCSSEEC--STTCEEEEECSCCC
T ss_pred HHHHHHhCCccc--CCCceEEEEEcchH
Confidence 999999999998 788 7776654333
No 50
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.87 E-value=1.6e-08 Score=78.80 Aligned_cols=85 Identities=24% Similarity=0.380 Sum_probs=69.1
Q ss_pred CCCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchH
Q 019393 178 KQEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRD 257 (341)
Q Consensus 178 geRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~ 257 (341)
...+-||||.|||..+ +++.|+.+|++||+|..|.|+.+.. + ..|+ |||+|....+
T Consensus 12 ~~~~~~l~V~nlp~~~----------t~~~l~~~f~~~G~v~~v~i~~~~~-~----------~~g~---afV~f~~~~~ 67 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRF----------RDPDLRQMFGQFGKILDVEIIFNER-G----------SKGF---GFVTFENSAD 67 (103)
T ss_dssp SCCCCEEEEESCCTTC----------CHHHHHHHGGGTSCEEEEEEECCTT-T----------TCCE---EEEEESCHHH
T ss_pred CCCCCEEEEeCCCCCC----------CHHHHHHHHHhcCCeEEEEEEecCC-C----------CcEE---EEEEECCHHH
Confidence 4566799999999887 8899999999999999999987631 1 2366 9999999999
Q ss_pred HHHHHHHhcCccceecCceeEEEEEEeecccCCCc
Q 019393 258 FYNTLKVLCGRSMQKQGSQLKADYEVTWDKDGFFW 292 (341)
Q Consensus 258 F~kAM~aLrGmKL~~kGk~l~a~ikV~fD~tkhlS 292 (341)
..+||+.|.|..+ .|+. |+|.|-+.+..+
T Consensus 68 a~~A~~~l~g~~~--~g~~----l~v~~a~~~~~~ 96 (103)
T 2cq3_A 68 ADRAREKLHGTVV--EGRK----IEVNNATARVMT 96 (103)
T ss_dssp HHHHHHHHTTCEE--TTEE----CEEEECCSSCCC
T ss_pred HHHHHHHhCCCEE--CCEE----EEEEEcccCCCC
Confidence 9999999999998 7766 455555544433
No 51
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=98.87 E-value=6.4e-09 Score=84.03 Aligned_cols=78 Identities=19% Similarity=0.345 Sum_probs=66.5
Q ss_pred CCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHH
Q 019393 179 QEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDF 258 (341)
Q Consensus 179 eRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F 258 (341)
...-||||.|||..+ +++.|+.+|+.||+|.+|.|+.+. .++. .|+ |||+|....+.
T Consensus 33 ~~~~~l~V~nlp~~~----------t~~~l~~~F~~~G~v~~v~i~~~~-~g~~---------~g~---afV~f~~~~~A 89 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGV----------SDADIQELFAEFGTLKKAAVDYDR-SGRS---------LGT---ADVHFERRADA 89 (124)
T ss_dssp SSCEEEEEESCCSSC----------CHHHHHHHHHTTSCCSEEEEECCS-SSSC---------CSE---EEEEESSHHHH
T ss_pred CCCCEEEEeCCCCCC----------CHHHHHHHHHhcCCeeEEEEEECC-CCCE---------eeE---EEEEECCHHHH
Confidence 344589999999888 889999999999999999998875 4432 367 99999999999
Q ss_pred HHHHHHhcCccceecCceeEEEE
Q 019393 259 YNTLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 259 ~kAM~aLrGmKL~~kGk~l~a~i 281 (341)
.+|++.|.|..+ .|+.+.+.+
T Consensus 90 ~~Ai~~l~g~~~--~g~~l~V~~ 110 (124)
T 2kt5_A 90 LKAMKQYKGVPL--DGRPMDIQL 110 (124)
T ss_dssp HHHHHHHTTEES--SSCEEEEEE
T ss_pred HHHHHHcCCCEE--CCcEEEEEE
Confidence 999999999988 888766554
No 52
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=98.87 E-value=5e-09 Score=83.84 Aligned_cols=79 Identities=18% Similarity=0.336 Sum_probs=66.6
Q ss_pred CCCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchH
Q 019393 178 KQEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRD 257 (341)
Q Consensus 178 geRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~ 257 (341)
...+-||+|.|||..+ +++.|+.+|++||+|..|.|+.+...+. ..|+ |||+|....+
T Consensus 23 ~~~~~~l~V~nLp~~~----------te~~l~~~F~~~G~i~~v~i~~~~~~g~---------~~g~---afV~F~~~~~ 80 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNI----------TEDMLRGIFEPFGRIESIQLMMDSETGR---------SKGY---GFITFSDSEC 80 (108)
T ss_dssp CSSCEEEEEECCCSSC----------CHHHHHHHHTTTSCEEEEEEEEETTTTE---------EEEE---EEEEESCHHH
T ss_pred CCCCCEEEEeCCCCCC----------CHHHHHHHHHhcCCeEEEEEEEcCCCCc---------cceE---EEEEECCHHH
Confidence 4556799999999887 8899999999999999999987643332 2366 9999999999
Q ss_pred HHHHHHHhcCccceecCceeEEE
Q 019393 258 FYNTLKVLCGRSMQKQGSQLKAD 280 (341)
Q Consensus 258 F~kAM~aLrGmKL~~kGk~l~a~ 280 (341)
..+|+++|.|..+ .|+.+.+.
T Consensus 81 A~~Ai~~l~g~~i--~g~~l~V~ 101 (108)
T 2jrs_A 81 AKKALEQLNGFEL--AGRPMKVG 101 (108)
T ss_dssp HHHHHHHHTTCCS--SSSCCEEE
T ss_pred HHHHHHHcCCCEE--CCEEEEEE
Confidence 9999999999888 78776554
No 53
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.87 E-value=5.3e-09 Score=76.96 Aligned_cols=74 Identities=15% Similarity=0.198 Sum_probs=62.0
Q ss_pred eEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHH
Q 019393 183 TIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTL 262 (341)
Q Consensus 183 TI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM 262 (341)
||+|.|||..+ +++-|+.+|++||+|.+|.|+.+...++ ..|. |||+|....+..+|+
T Consensus 2 ~l~v~nlp~~~----------t~~~l~~~F~~~G~v~~v~i~~~~~~~~---------~~g~---afV~f~~~~~a~~a~ 59 (77)
T 1uaw_A 2 KMFIGGLSWQT----------TQEGLREYFGQFGEVKECLVMRDPLTKR---------SRGF---GFVTFMDQAGVDKVL 59 (77)
T ss_dssp CEEEESCCSSC----------CSHHHHHHHTTTSCCCCEEEECCCCSSS---------CSSE---EEECCCCTTHHHHHH
T ss_pred EEEEeCCCCCC----------CHHHHHHHHHhcCCEEEEEEecCCCCCC---------cCce---EEEEEcCHHHHHHHH
Confidence 79999999888 7888999999999999999987644333 2377 999999999999999
Q ss_pred HHhcCccceecCceeEEEE
Q 019393 263 KVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 263 ~aLrGmKL~~kGk~l~a~i 281 (341)
+.+. ..+ .|+.+.+++
T Consensus 60 ~~~~-~~~--~g~~l~v~~ 75 (77)
T 1uaw_A 60 AQSR-HEL--DSKTIDPKV 75 (77)
T ss_dssp HTTT-CCC--SSCCCEEEE
T ss_pred HhCC-Ccc--CCEEEEEEe
Confidence 9888 555 788776654
No 54
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.86 E-value=3.4e-09 Score=84.66 Aligned_cols=88 Identities=13% Similarity=0.237 Sum_probs=70.8
Q ss_pred CCCCeEEEcCCccccccCCCCCCCCcHHHHH---HHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccc
Q 019393 179 QEPDTIVIKGVPSRWFAEPRVSSKPSMLVTH---TVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKY 255 (341)
Q Consensus 179 eRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~---~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey 255 (341)
...-||||.|||..+ +++.|+ .+|++||+|..|.|+.+..+++... ..|+ |||+|...
T Consensus 13 ~~~~~l~V~nLp~~~----------~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~------~~G~---afV~f~~~ 73 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRL----------ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQG------PSAS---AYVTYIRS 73 (111)
T ss_dssp CCSSCEEEEEECTTT----------CCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSC------CCEE---EEEEESSH
T ss_pred cCCCEEEEECCCCCC----------CHHHHHHHHHHhhccCCEEEEEEecCCCcCccCC------CCeE---EEEEECcH
Confidence 345699999999887 677788 9999999999999987766543221 2367 99999999
Q ss_pred hHHHHHHHHhcCccceecCceeEEEEEEeecccCCC
Q 019393 256 RDFYNTLKVLCGRSMQKQGSQLKADYEVTWDKDGFF 291 (341)
Q Consensus 256 ~~F~kAM~aLrGmKL~~kGk~l~a~ikV~fD~tkhl 291 (341)
.+..+||+.|.|..| .|+. |+|.|-++++-
T Consensus 74 ~~A~~Ai~~lng~~~--~gr~----l~V~~a~~k~~ 103 (111)
T 2cpi_A 74 EDALRAIQCVNNVVV--DGRT----LKASLGTTKYC 103 (111)
T ss_dssp HHHHHHHHHHTTEEE--TTEE----EEEESCCCCSC
T ss_pred HHHHHHHHHhCCCEE--CCEE----EEEEecccccc
Confidence 999999999999998 7874 56677666653
No 55
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.86 E-value=3e-09 Score=82.11 Aligned_cols=80 Identities=19% Similarity=0.223 Sum_probs=67.6
Q ss_pred CCCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchH
Q 019393 178 KQEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRD 257 (341)
Q Consensus 178 geRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~ 257 (341)
...+-||+|.|||..+ +++.|+.+|++||.|..+.|+.++..++. .|+ |||+|....+
T Consensus 12 ~~~~~~l~v~nLp~~~----------t~~~l~~~F~~~G~v~~~~~~~~~~~g~~---------~g~---afV~f~~~~~ 69 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTV----------SIDEILDFFYGYQVIPGSVCLKYNEKGMP---------TGE---AMVAFESRDE 69 (98)
T ss_dssp CCSSEEEEEESCCTTC----------CHHHHHHHTTTSCCCTTTCEEEECSSSCE---------EEE---EEEEESCHHH
T ss_pred CCCCCEEEEeCCCCCC----------CHHHHHHHHHHcCCccceEEEEECCCCCe---------eeE---EEEEECCHHH
Confidence 4566789999999887 88999999999999999988877555432 266 9999999999
Q ss_pred HHHHHHHhcCccceecCceeEEEE
Q 019393 258 FYNTLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 258 F~kAM~aLrGmKL~~kGk~l~a~i 281 (341)
..+||+.|.|..+ .|+.+.+.+
T Consensus 70 a~~Ai~~l~g~~~--~g~~l~V~~ 91 (98)
T 2cqp_A 70 ATAAVIDLNDRPI--GSRKVKLVL 91 (98)
T ss_dssp HHHHHHHTTTCEE--TTEECEEEE
T ss_pred HHHHHHHhCCCee--CCeEEEEEE
Confidence 9999999999988 887766554
No 56
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=98.85 E-value=5.7e-09 Score=76.61 Aligned_cols=73 Identities=14% Similarity=0.257 Sum_probs=61.4
Q ss_pred eEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHH
Q 019393 183 TIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTL 262 (341)
Q Consensus 183 TI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM 262 (341)
||||.|||..+ +++-|+.+|++||+|.+|.|+.+...++. .|+ |||+|....+..+||
T Consensus 1 ~l~v~nLp~~~----------t~~~l~~~F~~~G~i~~v~i~~~~~~~~~---------~g~---afV~f~~~~~a~~Ai 58 (75)
T 1iqt_A 1 KIFVGGLSPDT----------PEEKIREYFGGFGEVESIELPMDNKTNKR---------RGF---CFITFKEEEPVKKIM 58 (75)
T ss_dssp CEEESCCCSSC----------CHHHHHHHHHHHSCCSEECCCCSCCCSSS---------CCC---EEEECSSSHHHHHHH
T ss_pred CEEEeCCCCCC----------CHHHHHHHHHhcCCeEEEEEEecCCCCCc---------CCE---EEEEECCHHHHHHHH
Confidence 79999999998 89999999999999999999976544332 367 999999999999999
Q ss_pred HHhcCccceecCceeEEE
Q 019393 263 KVLCGRSMQKQGSQLKAD 280 (341)
Q Consensus 263 ~aLrGmKL~~kGk~l~a~ 280 (341)
+. .|..+ .|+.+.+.
T Consensus 59 ~~-~~~~~--~g~~l~v~ 73 (75)
T 1iqt_A 59 EK-KYHNV--GLSKCEIK 73 (75)
T ss_dssp TT-SSCCB--TTBCCCEE
T ss_pred Hh-CCCeE--CCEEEEEE
Confidence 95 77666 78776654
No 57
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.85 E-value=5.2e-09 Score=84.81 Aligned_cols=72 Identities=10% Similarity=0.084 Sum_probs=63.0
Q ss_pred CeEEEcCCcc-ccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHH
Q 019393 182 DTIVIKGVPS-RWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYN 260 (341)
Q Consensus 182 DTI~l~gLP~-rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~k 260 (341)
-+|||.|||. .. +|+-|+.+|++||+|.+|.|+.+. |. |||+|++..+..+
T Consensus 16 ~~l~V~nLp~~~~----------te~dL~~lF~~fG~V~~v~i~~~k---------------g~---aFVef~~~~~A~~ 67 (102)
T 1x4d_A 16 RVVHIMDFQRGKN----------LRYQLLQLVEPFGVISNHLILNKI---------------NE---AFIEMATTEDAQA 67 (102)
T ss_dssp CEEEEESCCCSSS----------HHHHHHTTTGGGSCEEEEEECSSS---------------SC---EEEEESSHHHHHH
T ss_pred CEEEEeCCCCCcC----------CHHHHHHHHHhcCCEEEEEEEcCC---------------CE---EEEEECCHHHHHH
Confidence 4899999998 77 899999999999999999997531 34 9999999999999
Q ss_pred HHHHhcCccceecCceeEEEE
Q 019393 261 TLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 261 AM~aLrGmKL~~kGk~l~a~i 281 (341)
||+.|.|..+...|+.+.+++
T Consensus 68 Ai~~l~~~~~~~~Gr~l~V~~ 88 (102)
T 1x4d_A 68 AVDYYTTTPALVFGKPVRVHL 88 (102)
T ss_dssp HHHHHHHSCCEETTEECEEEE
T ss_pred HHHHHcCCCceECCcEEEEEE
Confidence 999999988666899877665
No 58
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.85 E-value=2e-09 Score=86.35 Aligned_cols=81 Identities=15% Similarity=0.203 Sum_probs=68.5
Q ss_pred CCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHH
Q 019393 180 EPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFY 259 (341)
Q Consensus 180 RPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~ 259 (341)
..-||||.|||..+ +++.|+.+|++||+|.+|.||.+.. +.. .|+ |||+|..-.+..
T Consensus 10 ~~~~lfV~~Lp~~~----------te~~L~~~F~~~G~v~~v~i~~d~~-g~~---------rG~---aFV~F~~~e~a~ 66 (103)
T 1s79_A 10 KNRSVYIKGFPTDA----------TLDDIKEWLEDKGQVLNIQMRRTLH-KAF---------KGS---IFVVFDSIESAK 66 (103)
T ss_dssp GGGCEEEECCCTTC----------CHHHHHHHHHTSSCEEEEEEECCCT-TSC---------CCE---EEEEESSHHHHH
T ss_pred CCCEEEEECCCCCC----------CHHHHHHHHhhcCCEEEEEEEECCC-CCC---------ccE---EEEEECCHHHHH
Confidence 34599999999987 8999999999999999999998644 442 377 999999999999
Q ss_pred HHHHHhcCccceecCceeEEEEEEeec
Q 019393 260 NTLKVLCGRSMQKQGSQLKADYEVTWD 286 (341)
Q Consensus 260 kAM~aLrGmKL~~kGk~l~a~ikV~fD 286 (341)
+||+ +.|..+ +|+.+.+..+-++.
T Consensus 67 ~Ai~-~~~~~~--~gr~l~V~~~~~~~ 90 (103)
T 1s79_A 67 KFVE-TPGQKY--KETDLLILFKDDYF 90 (103)
T ss_dssp HHHT-SSCCCC--TTTTCEEEEHHHHH
T ss_pred HHHH-cCCCEE--CCEEEEEEEchHHH
Confidence 9999 888887 89998877655543
No 59
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.85 E-value=7.4e-09 Score=83.54 Aligned_cols=78 Identities=12% Similarity=0.112 Sum_probs=65.0
Q ss_pred CeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHH
Q 019393 182 DTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNT 261 (341)
Q Consensus 182 DTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kA 261 (341)
-||||.|||... +|+.|+.+|++||+|.+|.|+.. .|+ |||+|+.-.+..+|
T Consensus 16 ~~l~V~nLp~~~----------te~~L~~~F~~fG~V~~v~i~~~---------------kg~---aFVef~~~~~A~~A 67 (104)
T 1wex_A 16 PVVHVRGLCESV----------VEADLVEALEKFGTICYVMMMPF---------------KRQ---ALVEFENIDSAKEC 67 (104)
T ss_dssp SEEEEESCCSSC----------CHHHHHHHHTTTSCEEEEEEETT---------------TTE---EEEEESSHHHHHHH
T ss_pred CEEEEeCCCCCC----------CHHHHHHHHHhCCCEEEEEEECC---------------CCE---EEEEECCHHHHHHH
Confidence 589999999877 89999999999999999998742 166 99999999999999
Q ss_pred HHHhcCccceecCceeEEEEEEeecccCCC
Q 019393 262 LKVLCGRSMQKQGSQLKADYEVTWDKDGFF 291 (341)
Q Consensus 262 M~aLrGmKL~~kGk~l~a~ikV~fD~tkhl 291 (341)
|+.|.|..+...|+.+. |.|-+.+.+
T Consensus 68 i~~l~~~~~~i~Gr~l~----V~~a~~~~~ 93 (104)
T 1wex_A 68 VTFAADVPVYIAGQQAF----FNYSTSKRI 93 (104)
T ss_dssp HHHHHHSCCBSSSSBCE----EEECSSSSC
T ss_pred HHHhccCCceECCEEEE----EEEccCccc
Confidence 99999887666898765 455454443
No 60
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=98.84 E-value=1.1e-08 Score=79.75 Aligned_cols=77 Identities=18% Similarity=0.216 Sum_probs=64.1
Q ss_pred CCCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchH
Q 019393 178 KQEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRD 257 (341)
Q Consensus 178 geRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~ 257 (341)
...+-||||.|||..+ +++.|+.+|++||+|..|.|+.+. .++ ..|+ |||+|....+
T Consensus 12 ~~~~~~l~v~nLp~~~----------t~~~l~~~F~~~G~i~~v~i~~~~-~g~---------~~g~---afV~f~~~~~ 68 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQ----------SEEDVLRLFQPFGVIDECTVLRGP-DGS---------SKGC---AFVKFSSHTE 68 (105)
T ss_dssp CCCCCEEEEESCCTTC----------CHHHHHHHHTTTSCEEEEEEEECS-SSC---------EEEE---EEEEESSHHH
T ss_pred CCCCCEEEEeCCCCCC----------CHHHHHHHHHhcCCeEEEEEEECC-CCC---------cCcE---EEEEeCCHHH
Confidence 3456799999999888 899999999999999999998763 322 2366 9999999999
Q ss_pred HHHHHHHhcCccceecC---ceeEE
Q 019393 258 FYNTLKVLCGRSMQKQG---SQLKA 279 (341)
Q Consensus 258 F~kAM~aLrGmKL~~kG---k~l~a 279 (341)
..+|+++|.|..+ .| +.+.+
T Consensus 69 A~~Ai~~l~g~~~--~gg~~~~l~V 91 (105)
T 2dnh_A 69 AQAAIHALHGSQT--MPGASSSLVV 91 (105)
T ss_dssp HHHHHHHHSSCCC--CTTCSSCCEE
T ss_pred HHHHHHHHcCCcc--CCCCCccEEE
Confidence 9999999999988 44 65544
No 61
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=98.84 E-value=8.1e-09 Score=83.87 Aligned_cols=79 Identities=19% Similarity=0.353 Sum_probs=67.1
Q ss_pred CCCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchH
Q 019393 178 KQEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRD 257 (341)
Q Consensus 178 geRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~ 257 (341)
....-||||.|||-.+ +++.|+.+|++||+|..|.|+.+...++ ..|+ |||+|..-.+
T Consensus 60 ~~~~~~l~v~nlp~~~----------~~~~l~~~f~~~G~i~~v~i~~~~~~~~---------~~g~---afV~f~~~~~ 117 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEV----------DDKVLHAAFIPFGDITDIQIPLDYETEK---------HRGF---AFVEFELAED 117 (140)
T ss_dssp CSSCCEEEEECCCTTC----------CHHHHHHHHGGGSCEEEEECCCCTTTCC---------CCSE---EEEEESCHHH
T ss_pred CCCCcEEEEEeCCCCC----------CHHHHHHHHHhcCCEEEEEEeecCCCCC---------cCcE---EEEEECCHHH
Confidence 3455699999999887 8899999999999999999987744433 2377 9999999999
Q ss_pred HHHHHHHhcCccceecCceeEEE
Q 019393 258 FYNTLKVLCGRSMQKQGSQLKAD 280 (341)
Q Consensus 258 F~kAM~aLrGmKL~~kGk~l~a~ 280 (341)
..+|+++|.|..+ .|+.+.+.
T Consensus 118 a~~A~~~l~g~~~--~g~~l~v~ 138 (140)
T 2ku7_A 118 AAAAIDNMNESEL--FGRTIRVN 138 (140)
T ss_dssp HHHHHHHSTEEEE--TTEEEEEE
T ss_pred HHHHHHHhCCCEE--CCEEEEEE
Confidence 9999999999888 78877665
No 62
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.84 E-value=4.4e-09 Score=81.18 Aligned_cols=85 Identities=21% Similarity=0.313 Sum_probs=66.6
Q ss_pred CCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHH
Q 019393 180 EPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFY 259 (341)
Q Consensus 180 RPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~ 259 (341)
.+-||||.|||..+ +++.|+.+|++||+|..|.|+.+.... +.+...|+ |||+|....+..
T Consensus 4 ~~~~l~V~nLp~~~----------t~~~l~~~F~~~G~i~~v~i~~~~~~~------gt~~~~g~---afV~f~~~~~a~ 64 (98)
T 2cpf_A 4 GSSGLFIKNLNFST----------TEETLKGVFSKVGAIKSCTISKKKNKA------GVLLSMGF---GFVEYKKPEQAQ 64 (98)
T ss_dssp CCCCEEEESCCTTC----------CHHHHHHHHHTTSCEEEEEEEEEECTT------CCEEEEEE---EEEEESSHHHHH
T ss_pred CCCEEEEeCCCCCC----------CHHHHHHHHHhcCCeEEEEEEecCCCC------CCcCcccE---EEEEECCHHHHH
Confidence 35699999999887 899999999999999999998763310 00122366 999999999999
Q ss_pred HHHHHhcCccceecCceeEEEEEEeecccC
Q 019393 260 NTLKVLCGRSMQKQGSQLKADYEVTWDKDG 289 (341)
Q Consensus 260 kAM~aLrGmKL~~kGk~l~a~ikV~fD~tk 289 (341)
+||++|.|..+ .|+. |+|.|-+.+
T Consensus 65 ~A~~~l~g~~~--~g~~----l~V~~a~~~ 88 (98)
T 2cpf_A 65 KALKQLQGHTV--DGHK----LEVRISERA 88 (98)
T ss_dssp HHHHHSTTCEE--TTEE----CEEECSSCS
T ss_pred HHHHHhCCCee--CCeE----EEEEEccCC
Confidence 99999999987 6765 455565543
No 63
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.83 E-value=9.5e-09 Score=78.48 Aligned_cols=75 Identities=16% Similarity=0.265 Sum_probs=63.9
Q ss_pred CCCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchH
Q 019393 178 KQEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRD 257 (341)
Q Consensus 178 geRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~ 257 (341)
...+-||||.|||..+ +++.|+.+|++||+|..|.|+ + |+ |||+|....+
T Consensus 5 ~~~~~~l~V~nlp~~~----------t~~~l~~~F~~~G~i~~v~~~------~-----------g~---afV~f~~~~~ 54 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREA----------TEQEIRSLFEQYGKVLECDII------K-----------NY---GFVHIEDKTA 54 (90)
T ss_dssp SSCCEEEEEESCCSSC----------CHHHHHHHHHTSSCEEEEEEE------T-----------TE---EEEEESSHHH
T ss_pred CCCCeEEEEeCCCCCC----------CHHHHHHHHHhCCCEEEEEEE------C-----------CE---EEEEECCHHH
Confidence 3456699999999988 889999999999999999998 1 55 9999999999
Q ss_pred HHHHHHHhcCccceecCceeEEEEEEeeccc
Q 019393 258 FYNTLKVLCGRSMQKQGSQLKADYEVTWDKD 288 (341)
Q Consensus 258 F~kAM~aLrGmKL~~kGk~l~a~ikV~fD~t 288 (341)
..+|++.|.|..+ .|+.+ +|.|.+.
T Consensus 55 A~~A~~~l~g~~~--~g~~l----~v~~a~~ 79 (90)
T 2dnq_A 55 AEDAIRNLHHYKL--HGVNI----NVEASKN 79 (90)
T ss_dssp HHHHHHHHTTCBC--SSCBC----EEECSSC
T ss_pred HHHHHHHhcCCcc--CCcEE----EEEECCC
Confidence 9999999999988 77764 4555443
No 64
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.83 E-value=8.8e-09 Score=81.59 Aligned_cols=82 Identities=20% Similarity=0.358 Sum_probs=66.6
Q ss_pred CCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCcee--------eeeecCCCCCCCCCCCCCCCcccceeEEEEE
Q 019393 179 QEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIR--------NLNVAEDDDPGKDADEDGGDIISGLHCKIVV 250 (341)
Q Consensus 179 eRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIR--------nvDIP~~Dpyr~~~~~~~g~~~~gL~feayV 250 (341)
...-||||.|||..+ +++.|+.+|++||.|. .|.|+.+...++. .|+ |||
T Consensus 13 ~~~~~l~V~nLp~~~----------t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~---------~g~---afV 70 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSV----------TLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKP---------KGD---ATV 70 (113)
T ss_dssp CCCCEEEEECCCTTC----------CHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSB---------CSE---EEE
T ss_pred CCCCEEEEcCCCCCC----------CHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCe---------eeE---EEE
Confidence 345699999999777 8899999999999999 6999886444332 367 999
Q ss_pred EeccchHHHHHHHHhcCccceecCceeEEEEEEeeccc
Q 019393 251 QFEKYRDFYNTLKVLCGRSMQKQGSQLKADYEVTWDKD 288 (341)
Q Consensus 251 Qy~ey~~F~kAM~aLrGmKL~~kGk~l~a~ikV~fD~t 288 (341)
+|....+..+||+.|.|..+ .|+.+ +|.|-+.
T Consensus 71 ~f~~~~~A~~Ai~~l~g~~~--~g~~l----~V~~a~~ 102 (113)
T 2cpe_A 71 SYEDPPTAKAAVEWFDGKDF--QGSKL----KVSLARK 102 (113)
T ss_dssp EBSSHHHHHHHHHHHTTCEE--TTEEC----EEECSSC
T ss_pred EECCHHHHHHHHHHcCCCcc--CCCEE----EEEECCC
Confidence 99999999999999999998 67654 5555543
No 65
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=98.83 E-value=1.3e-08 Score=76.84 Aligned_cols=78 Identities=14% Similarity=0.297 Sum_probs=63.4
Q ss_pred CCCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchH
Q 019393 178 KQEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRD 257 (341)
Q Consensus 178 geRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~ 257 (341)
...+-||||.|||..+ +++.|+.+|++||+|.+|.|+.+...+. ..|+ |||+|....+
T Consensus 8 ~~~~~~l~V~nlp~~~----------t~~~l~~~F~~~G~i~~v~i~~~~~~g~---------~~g~---afV~f~~~~~ 65 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDT----------SKKDLKDYFTKFGEVVDCTIKMDPNTGR---------SRGF---GFILFKDAAS 65 (87)
T ss_dssp CSCTTEEEEECCCTTC----------CHHHHHHHHTTTSCEEEEEEEECTTTCC---------EEEE---EEEEESSTHH
T ss_pred CCCCCEEEEeCCCCCC----------CHHHHHHHHHhCCCEEEEEEeecCCCCc---------cccE---EEEEECCHHH
Confidence 3556699999999887 8999999999999999999987744333 2366 9999999999
Q ss_pred HHHHHHHhcCccceecCceeEEE
Q 019393 258 FYNTLKVLCGRSMQKQGSQLKAD 280 (341)
Q Consensus 258 F~kAM~aLrGmKL~~kGk~l~a~ 280 (341)
..+||+. .|..| +|+.+.+.
T Consensus 66 a~~A~~~-~~~~~--~g~~i~v~ 85 (87)
T 3s7r_A 66 VEKVLDQ-KEHRL--DGRVIDPK 85 (87)
T ss_dssp HHHHHHS-SCEEE--TTEEEEEE
T ss_pred HHHHHHh-CCCEE--CCEEEEEE
Confidence 9999965 56554 78777654
No 66
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=98.83 E-value=8e-09 Score=76.03 Aligned_cols=73 Identities=15% Similarity=0.227 Sum_probs=62.3
Q ss_pred eEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHH
Q 019393 183 TIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTL 262 (341)
Q Consensus 183 TI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM 262 (341)
+|+|.|||..+ +++.|+.+|++||+|..|.|+.+...+. ..|. |||+|....+..+|+
T Consensus 1 ~l~v~nlp~~~----------t~~~l~~~F~~~G~i~~v~i~~~~~~~~---------~~g~---afV~f~~~~~a~~a~ 58 (75)
T 2mss_A 1 KIFVGGLSVNT----------TVEDVKHYFEQFGKVDDAMLMFDKTTNR---------HRGF---GFVTFESEDIVEKVC 58 (75)
T ss_dssp CEEEECCCSSC----------CHHHHHHHHHTTSCCSEECCCBCSSSTT---------SCBE---EEEECSCHHHHHHHH
T ss_pred CEEEecCCCCC----------CHHHHHHHHHhcCCEEEEEEEecCCCCC---------cCcE---EEEEECCHHHHHHHH
Confidence 58999999887 8999999999999999999987654443 2377 999999999999999
Q ss_pred HHhcCccceecCceeEEE
Q 019393 263 KVLCGRSMQKQGSQLKAD 280 (341)
Q Consensus 263 ~aLrGmKL~~kGk~l~a~ 280 (341)
+ |.|..+ .|+.+.++
T Consensus 59 ~-~~~~~~--~g~~l~v~ 73 (75)
T 2mss_A 59 E-IHFHEI--NNKMVECK 73 (75)
T ss_dssp S-SSCCCS--SSCCCEEE
T ss_pred H-CCCCEE--CCEEEEEE
Confidence 8 899888 78877664
No 67
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.83 E-value=1.4e-08 Score=79.56 Aligned_cols=78 Identities=17% Similarity=0.289 Sum_probs=65.2
Q ss_pred CCCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCC-CCCCCCCCCCcccceeEEEEEEeccch
Q 019393 178 KQEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDP-GKDADEDGGDIISGLHCKIVVQFEKYR 256 (341)
Q Consensus 178 geRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpy-r~~~~~~~g~~~~gL~feayVQy~ey~ 256 (341)
...+-||||.|||..+ +++.|+.+|+.|| |..|.|+.+... ++. .|+ |||+|....
T Consensus 12 ~~~~~~l~V~nlp~~~----------t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~---------~g~---afV~f~~~~ 68 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDV----------TEESIKEFFRGLN-ISAVRLPREPSNPERL---------KGF---GYAEFEDLD 68 (104)
T ss_dssp SSSCEEEEEESCCSSC----------CHHHHHHHTTTSC-EEEEECCBCSSCTTSB---------CSC---EEEEESSHH
T ss_pred CCCCCEEEEeCCCCcC----------CHHHHHHHHHHCC-ceEEEEecCCCCCCCc---------CeE---EEEEECCHH
Confidence 4566799999999887 8999999999999 999999887543 332 367 999999999
Q ss_pred HHHHHHHHhcCccceecCceeEEEE
Q 019393 257 DFYNTLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 257 ~F~kAM~aLrGmKL~~kGk~l~a~i 281 (341)
+..+|| .|.|..| .|+.+.+.+
T Consensus 69 ~a~~A~-~l~g~~~--~g~~l~V~~ 90 (104)
T 1wi8_A 69 SLLSAL-SLNEESL--GNKRIRVDV 90 (104)
T ss_dssp HHHHHH-GGGTCEE--TTEECEEEE
T ss_pred HHHHHH-hcCCCEe--CCcEEEEEE
Confidence 999999 9999988 787665443
No 68
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.82 E-value=1.2e-08 Score=81.00 Aligned_cols=80 Identities=20% Similarity=0.238 Sum_probs=66.6
Q ss_pred CCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHH
Q 019393 179 QEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDF 258 (341)
Q Consensus 179 eRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F 258 (341)
...-+|||.|||..+ +++.|+.+|++||+|..|.|+.+ |+ |||+|....+.
T Consensus 13 ~~~~~l~V~nLp~~~----------t~~~l~~~F~~~G~i~~~~i~~~----------------g~---afV~f~~~~~a 63 (108)
T 1x4c_A 13 RSENRVVVSGLPPSG----------SWQDLKDHMREAGDVCYADVYRD----------------GT---GVVEFVRKEDM 63 (108)
T ss_dssp SCCCEEEEESCCSSC----------CHHHHHHHHGGGSCEEEEEEETT----------------TE---EEEEESSHHHH
T ss_pred CCCCEEEEeCCCCCC----------CHHHHHHHHHhcCCEeEEEEecC----------------CE---EEEEECCHHHH
Confidence 344699999999877 89999999999999999999876 45 99999999999
Q ss_pred HHHHHHhcCccceecCc-eeEEEEEEeecccC
Q 019393 259 YNTLKVLCGRSMQKQGS-QLKADYEVTWDKDG 289 (341)
Q Consensus 259 ~kAM~aLrGmKL~~kGk-~l~a~ikV~fD~tk 289 (341)
.+||+.|.|..| .|. --...|+|.+.+.+
T Consensus 64 ~~Ai~~l~g~~~--~g~~~~~~~i~V~~a~~~ 93 (108)
T 1x4c_A 64 TYAVRKLDNTKF--RSHEGETAYIRVKVDGPR 93 (108)
T ss_dssp HHHHHHSSSEEE--ECTTSCEEEEEEEESSCC
T ss_pred HHHHHHHCcCCc--cCCcCcceEEEEEeCCCC
Confidence 999999999998 552 12245777777753
No 69
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=98.82 E-value=9.3e-09 Score=87.44 Aligned_cols=75 Identities=17% Similarity=0.338 Sum_probs=63.7
Q ss_pred CeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHH
Q 019393 182 DTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNT 261 (341)
Q Consensus 182 DTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kA 261 (341)
-||||.|||..+ ++..|+.+|++||+|.+|.|+.+...+. ..|+ |||+|....+..+|
T Consensus 73 ~~l~V~nLp~~~----------t~~~L~~~F~~~G~i~~v~i~~~~~~g~---------~~g~---afV~f~~~~~A~~A 130 (165)
T 1rk8_A 73 WILFVTSIHEEA----------QEDEIQEKFCDYGEIKNIHLNLDRRTGF---------SKGY---ALVEYETHKQALAA 130 (165)
T ss_dssp EEEEEESCCTTC----------CHHHHHHHHGGGSCEEEEEEEECTTTSS---------EEEE---EEEEESSHHHHHHH
T ss_pred CEEEEeCCCCCC----------CHHHHHHHhhcCCCEEEEEEEecCCCCc---------EeeE---EEEEECCHHHHHHH
Confidence 479999999887 8899999999999999999987754433 2366 99999999999999
Q ss_pred HHHhcCccceecCceeEEE
Q 019393 262 LKVLCGRSMQKQGSQLKAD 280 (341)
Q Consensus 262 M~aLrGmKL~~kGk~l~a~ 280 (341)
|++|.|..| .|+.+.+.
T Consensus 131 i~~l~g~~~--~g~~l~V~ 147 (165)
T 1rk8_A 131 KEALNGAEI--MGQTIQVD 147 (165)
T ss_dssp HHHHTTCEE--TTEECEEE
T ss_pred HHHhCCCEE--CCEEEEEE
Confidence 999999888 78655443
No 70
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=98.82 E-value=1.4e-08 Score=77.21 Aligned_cols=76 Identities=17% Similarity=0.321 Sum_probs=63.3
Q ss_pred CCCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchH
Q 019393 178 KQEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRD 257 (341)
Q Consensus 178 geRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~ 257 (341)
...+-||||.|||..+ +++.|+.+|++||+|..|.|+.+ .++ ..|+ |||+|....+
T Consensus 5 ~~~~~~l~V~nlp~~~----------t~~~l~~~f~~~G~v~~~~i~~~--~g~---------~~g~---afV~f~~~~~ 60 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDF----------TWKMLKDKFNECGHVLYADIKME--NGK---------SKGC---GVVKFESPEV 60 (92)
T ss_dssp SSSCCEEEECSCCTTC----------CHHHHHHHHHTTSCEEEEEEEES--SSC---------EEEE---EEEEESSHHH
T ss_pred CCCCcEEEEeCCCCCC----------CHHHHHHHHHhcCCEEEEEEEcc--CCC---------cceE---EEEEECCHHH
Confidence 3456799999999877 88999999999999999999862 111 2356 9999999999
Q ss_pred HHHHHHHhcCccceecCceeEE
Q 019393 258 FYNTLKVLCGRSMQKQGSQLKA 279 (341)
Q Consensus 258 F~kAM~aLrGmKL~~kGk~l~a 279 (341)
..+|+++|.|..+ .|+.+.+
T Consensus 61 a~~a~~~l~g~~~--~g~~l~v 80 (92)
T 2dgv_A 61 AERACRMMNGMKL--SGREIDV 80 (92)
T ss_dssp HHHHHHHHTTCCB--TTBCCCC
T ss_pred HHHHHHHhCCCEE--CCcEEEE
Confidence 9999999999998 7875543
No 71
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=98.82 E-value=2e-08 Score=79.77 Aligned_cols=76 Identities=21% Similarity=0.335 Sum_probs=64.3
Q ss_pred CCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHH
Q 019393 179 QEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDF 258 (341)
Q Consensus 179 eRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F 258 (341)
+..-||+|.|||..+ +++.|+.+|++||.|..|.|+.+. . ..|+ |||+|....+.
T Consensus 6 ~~~~~l~V~nlp~~~----------t~~~l~~~F~~~G~v~~v~i~~~~-~-----------~~g~---afV~f~~~~~A 60 (115)
T 3lqv_A 6 EVNRILYIRNLPYKI----------TAEEMYDIFGKYGPIRQIRVGNTP-E-----------TRGT---AYVVYEDIFDA 60 (115)
T ss_dssp TCCSEEEEESCCTTC----------CHHHHHHHHHTTSCEEEEEEECST-T-----------TTTC---EEEEESSHHHH
T ss_pred CCCCEEEEeCCCCCC----------CHHHHHHHHHhcCCeEEEEEeeCC-C-----------CCcE---EEEEECCHHHH
Confidence 344699999999888 889999999999999999998531 1 1367 99999999999
Q ss_pred HHHHHHhcCccceecCceeEEEE
Q 019393 259 YNTLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 259 ~kAM~aLrGmKL~~kGk~l~a~i 281 (341)
.+|+++|.|..+ .|+.+.+.+
T Consensus 61 ~~A~~~l~g~~~--~g~~l~v~~ 81 (115)
T 3lqv_A 61 KNAVDHLSGFNV--SNRYLVVLY 81 (115)
T ss_dssp HHHHHHHTTCBS--SSCBCEEEE
T ss_pred HHHHHHcCCCEE--CCeEEEEEE
Confidence 999999999998 788766554
No 72
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=98.82 E-value=1.1e-08 Score=84.02 Aligned_cols=79 Identities=14% Similarity=0.352 Sum_probs=66.9
Q ss_pred CCCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceee--eeecCCCCCCCCCCCCCCCcccceeEEEEEEeccc
Q 019393 178 KQEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRN--LNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKY 255 (341)
Q Consensus 178 geRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRn--vDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey 255 (341)
+.-..||||.|||..| +|+.|+.+|++||.|.. |.|+.+...++. .|+ |||+|...
T Consensus 20 ~~~~~~lfV~nL~~~~----------te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~---------rG~---aFV~f~~~ 77 (131)
T 2m2b_A 20 ENANDTIILRNLNPHS----------TMDSILGALAPYAVLSSSNVRVIKDKQTQLN---------RGF---AFIQLSTI 77 (131)
T ss_dssp SCCCCEEEECSCCTTC----------CSHHHHHHHGGGCCCCTTTEECCBCSSSSSB---------CSC---EEEECCHH
T ss_pred CCCCCEEEEeCCCCCC----------CHHHHHHHHHHhCCcceeeEEEEEcCCCCCc---------ceE---EEEEECCH
Confidence 4566799999999988 88999999999999965 999987555543 378 99999999
Q ss_pred hHHHHHHHHhcCc----cceecCceeEEEE
Q 019393 256 RDFYNTLKVLCGR----SMQKQGSQLKADY 281 (341)
Q Consensus 256 ~~F~kAM~aLrGm----KL~~kGk~l~a~i 281 (341)
+..+|++.|.|. .+ .|+.+.+++
T Consensus 78 -~a~~Ai~~l~g~~~~~~~--~gr~l~V~~ 104 (131)
T 2m2b_A 78 -EAAQLLQILQALHPPLTI--DGKTINVEF 104 (131)
T ss_dssp -HHHHHHHHHTTCCCSCCG--GGCCCCCEE
T ss_pred -HHHHHHHHhcCCCCCccC--CCEEEEEEE
Confidence 999999999999 66 888776554
No 73
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=98.81 E-value=9.1e-09 Score=79.97 Aligned_cols=74 Identities=22% Similarity=0.325 Sum_probs=64.1
Q ss_pred eEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHH
Q 019393 183 TIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTL 262 (341)
Q Consensus 183 TI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM 262 (341)
||||.|||..+ +++.|+.+|++||+|..|.|+.+ ..|+ |||+|....+..+|+
T Consensus 2 ~l~V~nLp~~~----------t~~~l~~~F~~~G~i~~v~i~~~--------------~~g~---afV~f~~~~~a~~A~ 54 (101)
T 2hvz_A 2 KVYVGNLGTGA----------GKGELERAFSYYGPLRTVWIARN--------------PPGF---AFVEFEDPRDAEDAV 54 (101)
T ss_dssp EEEEECCCSSC----------SHHHHHHHHHHHCCCSEEEEESS--------------SSSE---EEEECSSHHHHHHHH
T ss_pred EEEEeCCCCCC----------CHHHHHHHHHhcCCeEEEEEeeC--------------CCCE---EEEEECCHHHHHHHH
Confidence 89999999887 88999999999999999999987 1266 999999999999999
Q ss_pred HHhcCccceecCceeEEEEEEeecccC
Q 019393 263 KVLCGRSMQKQGSQLKADYEVTWDKDG 289 (341)
Q Consensus 263 ~aLrGmKL~~kGk~l~a~ikV~fD~tk 289 (341)
++|.|..+ .|+. |+|.|.+.+
T Consensus 55 ~~l~g~~~--~g~~----l~V~~a~~~ 75 (101)
T 2hvz_A 55 RGLDGKVI--CGSR----VRVELSTGM 75 (101)
T ss_dssp HHHHHSCS--SSCC----CEEEESSSC
T ss_pred HHHCCCeE--CCcE----EEEEEccCC
Confidence 99999988 7876 556666543
No 74
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.80 E-value=2.1e-08 Score=79.28 Aligned_cols=78 Identities=18% Similarity=0.285 Sum_probs=64.7
Q ss_pred CCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHH
Q 019393 179 QEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDF 258 (341)
Q Consensus 179 eRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F 258 (341)
...-||||.|||..+ +++.|+.+|++||+|..|.|+.+. .++ ..|+ |||+|....+.
T Consensus 13 ~~~~~l~V~nlp~~~----------~~~~l~~~f~~~G~i~~~~i~~~~-~g~---------~~g~---afV~f~~~~~a 69 (114)
T 2do0_A 13 RLGSTVFVANLDYKV----------GWKKLKEVFSMAGVVVRADILEDK-DGK---------SRGI---GTVTFEQSIEA 69 (114)
T ss_dssp CCCSCEEEESCCTTC----------CHHHHHHHHTTTSCEEEEEEEECT-TCS---------EEEE---EEEEESSHHHH
T ss_pred CCCCEEEEeCCCCCC----------CHHHHHHHHHhcCCeEEEEEEECC-CCC---------eeeE---EEEEECCHHHH
Confidence 344699999999887 889999999999999999998763 232 2366 99999999999
Q ss_pred HHHHHHhcCccceecCceeEEEE
Q 019393 259 YNTLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 259 ~kAM~aLrGmKL~~kGk~l~a~i 281 (341)
.+||+.|.|..+ .|+.+.+.+
T Consensus 70 ~~A~~~l~g~~~--~g~~l~v~~ 90 (114)
T 2do0_A 70 VQAISMFNGQLL--FDRPMHVKM 90 (114)
T ss_dssp HHHHHHHTTCEE--TTEECEEEE
T ss_pred HHHHHHhCCCEe--CCCEEEEEE
Confidence 999999999998 687655443
No 75
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=98.80 E-value=4.5e-09 Score=79.94 Aligned_cols=74 Identities=18% Similarity=0.273 Sum_probs=63.3
Q ss_pred eEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHH
Q 019393 183 TIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTL 262 (341)
Q Consensus 183 TI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM 262 (341)
||+|.|||..+ +++.|+.+|++||+|..|.|+.+...++. .|+ |||+|.... ..+|+
T Consensus 3 ~l~V~nLp~~~----------t~~~l~~~F~~~G~i~~v~i~~~~~~~~~---------~g~---afV~f~~~~-a~~a~ 59 (90)
T 2ki2_A 3 NIYVGNLVYSA----------TSEQVKELFSQFGKVFNVKLIYDRETKKP---------KGF---GFVEMQEES-VSEAI 59 (90)
T ss_dssp EEEEEEECTTS----------SHHHHTTTHHHHTCCSEEEECCCSSSCCC---------CEE---EEEEECTTH-HHHHH
T ss_pred EEEECCCCCCC----------CHHHHHHHHHhcCCEEEEEEEEcCCCCCc---------ceE---EEEEECCHH-HHHHH
Confidence 79999999887 88999999999999999999876544432 367 999999999 99999
Q ss_pred HHhcCccceecCceeEEEE
Q 019393 263 KVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 263 ~aLrGmKL~~kGk~l~a~i 281 (341)
+.|.|..+ .|+.+.+.+
T Consensus 60 ~~l~g~~~--~g~~l~V~~ 76 (90)
T 2ki2_A 60 AKLDNTDF--MGRTIRVTE 76 (90)
T ss_dssp HTSCSSCC--SSSSCSEEE
T ss_pred HHhCCCEE--CCeEEEEEE
Confidence 99999998 788766544
No 76
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.80 E-value=1.4e-08 Score=79.79 Aligned_cols=76 Identities=17% Similarity=0.167 Sum_probs=61.8
Q ss_pred CCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCc-eeeeeecCCCC-CCCCCCCCCCCcccceeEEEEEEeccchHH
Q 019393 181 PDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGK-IRNLNVAEDDD-PGKDADEDGGDIISGLHCKIVVQFEKYRDF 258 (341)
Q Consensus 181 PDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGk-IRnvDIP~~Dp-yr~~~~~~~g~~~~gL~feayVQy~ey~~F 258 (341)
.-||||.|||..+ +++.|+.+|+.||. |..|.|+..|. .+. ..|+ |||+|....+.
T Consensus 8 ~~~l~V~nLp~~~----------t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~---------~~g~---afV~f~~~~~A 65 (109)
T 2dis_A 8 NCRLFIGGIPKMK----------KREEILEEIAKVTEGVLDVIVYASAADKMK---------NRGF---AFVEYESHRAA 65 (109)
T ss_dssp SEEEEEECCCTTS----------CHHHHHHHHHHHSTTEEEEECCSSSCTTTT---------TCCE---EEEEESSHHHH
T ss_pred CCEEEEeCCCCcC----------CHHHHHHHHHHhcCCceEEEEEccCCCCCC---------cCcE---EEEEecCHHHH
Confidence 3489999999888 89999999999999 99999995443 222 2377 99999999999
Q ss_pred HHHHHHhc--CccceecCceeEEE
Q 019393 259 YNTLKVLC--GRSMQKQGSQLKAD 280 (341)
Q Consensus 259 ~kAM~aLr--GmKL~~kGk~l~a~ 280 (341)
.+|++.|. |..+ .|+.+.++
T Consensus 66 ~~A~~~l~~g~~~~--~g~~l~V~ 87 (109)
T 2dis_A 66 AMARRKLMPGRIQL--WGHQIAVD 87 (109)
T ss_dssp HHHHTTTTTCCSCB--TTBCCEEE
T ss_pred HHHHHHhhCCCcee--cCCeEEEE
Confidence 99999996 4666 78765443
No 77
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.80 E-value=2.1e-08 Score=77.09 Aligned_cols=76 Identities=18% Similarity=0.368 Sum_probs=64.0
Q ss_pred CCCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeee-ecCCCCCCCCCCCCCCCcccceeEEEEEEeccch
Q 019393 178 KQEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLN-VAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYR 256 (341)
Q Consensus 178 geRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvD-IP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~ 256 (341)
...+-||+|.|||..+ +++.|+.+|++||.|..|. |+.+... |. |||+|....
T Consensus 12 ~~~~~~l~V~nlp~~~----------t~~~l~~~F~~~G~v~~~~~i~~~~~~-------------~~---afV~f~~~~ 65 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHL----------QWEVLDSLLVQYGVVESCEQVNTDSET-------------AV---VNVTYSSKD 65 (96)
T ss_dssp CCSCCCEEEEEECSSS----------CHHHHHHHHHHHSCEEEEEEECCSSSS-------------EE---EEEEESSHH
T ss_pred CCCCCEEEEEcCCCCC----------CHHHHHHHHHhcCCeEEEEEeecCCCC-------------CE---EEEEECCHH
Confidence 4567799999999887 8999999999999999995 7654221 23 999999999
Q ss_pred HHHHHHHHhcCccceecCceeEEEE
Q 019393 257 DFYNTLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 257 ~F~kAM~aLrGmKL~~kGk~l~a~i 281 (341)
+..+|++.|.|..+ .|+.+.+++
T Consensus 66 ~a~~Ai~~l~g~~~--~g~~l~V~~ 88 (96)
T 2e44_A 66 QARQALDKLNGFQL--ENFTLKVAY 88 (96)
T ss_dssp HHHHHHHHHTTCBC--SSCBCEEEE
T ss_pred HHHHHHHHhCCCEE--CCcEEEEEE
Confidence 99999999999998 788776654
No 78
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=98.80 E-value=8.6e-09 Score=85.36 Aligned_cols=77 Identities=19% Similarity=0.318 Sum_probs=65.0
Q ss_pred CCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHH
Q 019393 180 EPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFY 259 (341)
Q Consensus 180 RPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~ 259 (341)
..-||+|.|||... +++.|+.+|++||+|.+|.|+.+...++. .|+ |||+|....+..
T Consensus 45 ~~~~l~V~nLp~~~----------te~~L~~~F~~~G~I~~v~i~~d~~tg~~---------~G~---afV~F~~~~~A~ 102 (129)
T 2kxn_B 45 PNCCLGVFGLSLYT----------TERDLREVFSKYGPIADVSIVYDQQSRRS---------RGF---AFVYFENVDDAK 102 (129)
T ss_dssp CSSCBCEETCTTSC----------CHHHHHHHHTTTSCEEEEEEECCSSSSCC---------CCE---EEEEESCHHHHH
T ss_pred CCCEEEEeCCCCCC----------CHHHHHHHHHhcCCeEEEEEEecCCCCcc---------ceE---EEEEECCHHHHH
Confidence 34589999999887 88999999999999999999976544332 367 999999999999
Q ss_pred HHHHHhcCccceecCceeEEE
Q 019393 260 NTLKVLCGRSMQKQGSQLKAD 280 (341)
Q Consensus 260 kAM~aLrGmKL~~kGk~l~a~ 280 (341)
+|++.|.|..+ +|+.+.+.
T Consensus 103 ~Ai~~lng~~i--~g~~l~V~ 121 (129)
T 2kxn_B 103 EAKERANGMEL--DGRRIRVD 121 (129)
T ss_dssp HHHHHHTTCCS--SSSCCEES
T ss_pred HHHHHhCCCEE--CCEEEEEE
Confidence 99999999888 78765543
No 79
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=98.80 E-value=1.4e-08 Score=83.19 Aligned_cols=84 Identities=14% Similarity=0.284 Sum_probs=68.8
Q ss_pred CCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHH
Q 019393 179 QEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDF 258 (341)
Q Consensus 179 eRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F 258 (341)
...-||+|.|||..+ +++.|+.+|+.||+|..|.|+.+...++ ..|+ |||+|....+.
T Consensus 40 ~~~~~l~V~nLp~~~----------~~~~l~~~F~~~G~i~~v~i~~~~~~~~---------~~g~---afV~f~~~~~a 97 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTV----------DEVQLRQLFERYGPIESVKIVCDRETRQ---------SRGY---GFVKFQSGSSA 97 (139)
T ss_dssp TTTSEEEEESCSTTC----------CHHHHHHHHHHHSCEEEEEEEEETTTTE---------EEEE---EEEEESSHHHH
T ss_pred CCCCEEEEeCCCCCC----------CHHHHHHHHHhcCCeEEEEEEEcCCCCC---------cceE---EEEEECCHHHH
Confidence 445699999999887 8899999999999999999987643322 2366 99999999999
Q ss_pred HHHHHHhcCccceecCceeEEEEEEeecccCC
Q 019393 259 YNTLKVLCGRSMQKQGSQLKADYEVTWDKDGF 290 (341)
Q Consensus 259 ~kAM~aLrGmKL~~kGk~l~a~ikV~fD~tkh 290 (341)
.+|+++|.|..+ .|+. |+|.|.+++.
T Consensus 98 ~~A~~~l~g~~~--~g~~----l~v~~a~~~~ 123 (139)
T 1u6f_A 98 QQAIAGLNGFNI--LNKR----LKVALAASGH 123 (139)
T ss_dssp HHHHHHTTTEEC--SSCE----EEEEESSCCC
T ss_pred HHHHHHhCCCEE--CCeE----EEEEECCCCC
Confidence 999999999998 6764 5666666543
No 80
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=98.80 E-value=7.5e-09 Score=83.49 Aligned_cols=78 Identities=21% Similarity=0.251 Sum_probs=65.6
Q ss_pred CCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHH
Q 019393 180 EPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFY 259 (341)
Q Consensus 180 RPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~ 259 (341)
..-+|+|.|||..+ +++.|+.+|++||+|..|.|+.+ |+ |||+|....+..
T Consensus 15 ~~~~l~V~nLp~~~----------t~~~l~~~F~~~G~v~~~~i~~~----------------g~---afV~f~~~~~a~ 65 (115)
T 3beg_B 15 SENRVVVSGLPPSG----------SWQDLKDHMREAGDVCYADVYRD----------------GT---GVVEFVRKEDMT 65 (115)
T ss_dssp --CCEEEEECCSSC----------CTTHHHHHHGGGSCEEEEEECTT----------------SE---EEEEESSHHHHH
T ss_pred CCcEEEEeCCCCCC----------CHHHHHHHHHhcCCeEEEEEecC----------------CE---EEEEECCHHHHH
Confidence 34689999999777 78889999999999999999865 45 999999999999
Q ss_pred HHHHHhcCccceecCceeE-EEEEEeeccc
Q 019393 260 NTLKVLCGRSMQKQGSQLK-ADYEVTWDKD 288 (341)
Q Consensus 260 kAM~aLrGmKL~~kGk~l~-a~ikV~fD~t 288 (341)
+||++|.|..| .|+.+. +.|+|..++.
T Consensus 66 ~Ai~~l~g~~~--~gr~~~~~~i~v~~~~~ 93 (115)
T 3beg_B 66 YAVRKLDNTKF--RSHEGETAYIRVKVDGP 93 (115)
T ss_dssp HHHHHHTTCBC--CCTTSCCCBCEEEECC-
T ss_pred HHHHHhCCCEE--CCcEeeeEEEEeccCCC
Confidence 99999999998 787655 3457777764
No 81
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.80 E-value=1.4e-08 Score=81.01 Aligned_cols=79 Identities=19% Similarity=0.230 Sum_probs=64.8
Q ss_pred CCCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchH
Q 019393 178 KQEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRD 257 (341)
Q Consensus 178 geRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~ 257 (341)
....-||||.|||..+ +++.|+.+|++||+|..|.|+.+...++. .|+ |||+|....+
T Consensus 14 ~~~~~~l~V~nlp~~~----------t~~~l~~~F~~~G~i~~v~i~~~~~~~~~---------~g~---afV~f~~~~~ 71 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHT----------TDASLRKYFEGFGDIEEAVVITDRQTGKS---------RGY---GFVTMADRAA 71 (116)
T ss_dssp SCSSSEEEEECCCSSC----------CHHHHHHHHHTTSCEEEEEESCCSSSCCC---------CSE---EEEEESSHHH
T ss_pred CCCCCEEEEeCCCCCC----------CHHHHHHHHHhCCCeeEEEEEEcCCCCcc---------ceE---EEEEECCHHH
Confidence 3456799999999887 89999999999999999999876544432 367 9999999999
Q ss_pred HHHHHHHhcCccceecCceeEEEE
Q 019393 258 FYNTLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 258 F~kAM~aLrGmKL~~kGk~l~a~i 281 (341)
..+||+.|.| .+ .|+.+.+.+
T Consensus 72 a~~Ai~~~~~-~~--~g~~l~V~~ 92 (116)
T 2cqd_A 72 AERACKDPNP-II--DGRKANVNL 92 (116)
T ss_dssp HHHHHTCSSC-EE--TTEECEEEE
T ss_pred HHHHHHhCCC-cC--CCEEEEEEE
Confidence 9999999998 44 786654433
No 82
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=98.79 E-value=1.7e-08 Score=84.16 Aligned_cols=79 Identities=18% Similarity=0.381 Sum_probs=66.6
Q ss_pred CCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHH
Q 019393 179 QEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDF 258 (341)
Q Consensus 179 eRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F 258 (341)
...-||||.|||..+ +++.|+.+|+.||.|..|.|+.+...+.. .|+ |||+|....+.
T Consensus 68 ~~~~~l~v~nl~~~~----------~~~~l~~~F~~~G~v~~~~i~~~~~~g~~---------~g~---afV~f~~~~~a 125 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRT----------SPDTLRRVFEKYGRVGDVYIPRDRYTKES---------RGF---AFVRFHDKRDA 125 (158)
T ss_dssp CBCCEEEEESCCTTC----------CHHHHHHHHHHHSCEEEEECCCCSSCTTS---------CCE---EEEEESBHHHH
T ss_pred CCCCEEEEeCCCCCC----------CHHHHHHHHHhcCCeEEEEEeecCCCCcc---------ceE---EEEEECCHHHH
Confidence 445699999999987 89999999999999999999887544432 377 99999999999
Q ss_pred HHHHHHhcCccceecCceeEEEE
Q 019393 259 YNTLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 259 ~kAM~aLrGmKL~~kGk~l~a~i 281 (341)
.+||++|.|..+ .|+.+.+.+
T Consensus 126 ~~A~~~l~g~~~--~g~~l~v~~ 146 (158)
T 2kn4_A 126 EDAMDAMDGAVL--DGRELRVQM 146 (158)
T ss_dssp HHHHHHSTTEES--SSSEEEEEE
T ss_pred HHHHHHhCCCEE--CCeEEEEEE
Confidence 999999999988 787655443
No 83
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.79 E-value=1.9e-08 Score=80.86 Aligned_cols=78 Identities=19% Similarity=0.266 Sum_probs=64.9
Q ss_pred CeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHH
Q 019393 182 DTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNT 261 (341)
Q Consensus 182 DTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kA 261 (341)
.||||.|||... +++.|+.+|++||.|..|.|+. ..|+ |||+|....+..+|
T Consensus 11 ~~l~V~nLp~~~----------te~~L~~~F~~~G~i~~v~i~~---------------~~g~---afV~f~~~~~A~~A 62 (111)
T 1whx_A 11 TVILAKNLPAGT----------LAAEIQETFSRFGSLGRVLLPE---------------GGIT---AIVEFLEPLEARKA 62 (111)
T ss_dssp EEEEEESCCTTC----------CHHHHHHHHHTTSCEEEEECCS---------------SSSC---EEEEESCHHHHHHH
T ss_pred CEEEEeCCCCCC----------CHHHHHHHHHhcCCEEEEEEeC---------------CCCE---EEEEeCCHHHHHHH
Confidence 489999999876 8999999999999999999983 1145 99999999999999
Q ss_pred HHHhcCccceecCceeEEEEEEeecccCCCcc
Q 019393 262 LKVLCGRSMQKQGSQLKADYEVTWDKDGFFWD 293 (341)
Q Consensus 262 M~aLrGmKL~~kGk~l~a~ikV~fD~tkhlS~ 293 (341)
|+.|.|..+ .|+.+. |.|-+..-+..
T Consensus 63 i~~l~g~~~--~g~~l~----V~~a~~~~~~~ 88 (111)
T 1whx_A 63 FRHLAYSKF--HHVPLY----LEWAPIGVFGA 88 (111)
T ss_dssp HHHHTTCBS--SSSBCE----EEEEETTTTCC
T ss_pred HHHhCCCEE--CCeEEE----EEECCCCccCC
Confidence 999999998 787665 55555555543
No 84
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=98.79 E-value=1.7e-08 Score=84.60 Aligned_cols=80 Identities=15% Similarity=0.263 Sum_probs=66.6
Q ss_pred CCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHH
Q 019393 179 QEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDF 258 (341)
Q Consensus 179 eRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F 258 (341)
..+-||+|.|||..+ +++.|+.+|++||+|.+|.|+.+...+. ..|+ |||+|....+.
T Consensus 37 ~~~~~l~V~nlp~~~----------t~~~l~~~F~~~G~i~~v~i~~~~~~~~---------~~g~---afV~f~~~~~A 94 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYT----------TEEQIYELFSKSGDIKKIIMGLDKMKKT---------ACGF---CFVEYYSRADA 94 (156)
T ss_dssp TTCCEEEEESCCTTC----------CHHHHHHHHGGGSCEEEEEEEECTTTCC---------EEEE---EEEEESSHHHH
T ss_pred CCCCEEEEeCCCCCC----------CHHHHHHHHHhcCCeEEEEEEecCCCCc---------cceE---EEEEECCHHHH
Confidence 455799999999877 8899999999999999999998644333 2266 99999999999
Q ss_pred HHHHHHhcCccceecCceeEEEEE
Q 019393 259 YNTLKVLCGRSMQKQGSQLKADYE 282 (341)
Q Consensus 259 ~kAM~aLrGmKL~~kGk~l~a~ik 282 (341)
.+||++|.|..| .|+.+.|++.
T Consensus 95 ~~Ai~~l~g~~~--~g~~l~V~~a 116 (156)
T 1h2v_Z 95 ENAMRYINGTRL--DDRIIRTDWD 116 (156)
T ss_dssp HHHHHHTTTSEE--TTEECEEEEE
T ss_pred HHHHHHhCCCEE--CCeEEEEEEC
Confidence 999999999998 7876555444
No 85
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.78 E-value=2.3e-08 Score=77.30 Aligned_cols=74 Identities=16% Similarity=0.319 Sum_probs=62.1
Q ss_pred CCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHH
Q 019393 180 EPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFY 259 (341)
Q Consensus 180 RPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~ 259 (341)
..-||||.|||..+ +++.|+.+|++||+|.+|+|+.. .|+ |||+|....+..
T Consensus 16 ~~~~l~V~nlp~~~----------t~~~l~~~F~~~G~v~~v~~~~~---------------~g~---afV~f~~~~~A~ 67 (97)
T 1why_A 16 PTTRLWVGGLGPNT----------SLAALAREFDRFGSIRTIDHVKG---------------DSF---AYIQYESLDAAQ 67 (97)
T ss_dssp CCSCEEEECCCSSC----------CHHHHHHHHHTTSCEEEEEECSS---------------SCC---EEEEESSHHHHH
T ss_pred CCCEEEEeCCCCCC----------CHHHHHHHHHhcCCeeEEEEeCC---------------CCE---EEEEECCHHHHH
Confidence 34699999999887 89999999999999999999743 155 999999999999
Q ss_pred HHHHHhcCccceecCceeEEEE
Q 019393 260 NTLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 260 kAM~aLrGmKL~~kGk~l~a~i 281 (341)
+|+++|.|..+...|+.+.+++
T Consensus 68 ~A~~~l~g~~~~~~g~~l~V~~ 89 (97)
T 1why_A 68 AACAKMRGFPLGGPDRRLRVDF 89 (97)
T ss_dssp HHHHHHTTCBCSSSSCBCEEEE
T ss_pred HHHHHHCCCEeCCCCcEEEEEE
Confidence 9999999998832277665543
No 86
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.78 E-value=2.4e-08 Score=79.59 Aligned_cols=78 Identities=22% Similarity=0.408 Sum_probs=65.7
Q ss_pred CCCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchH
Q 019393 178 KQEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRD 257 (341)
Q Consensus 178 geRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~ 257 (341)
...+-||||.|||... +++.|+.+|++||+|..|.|+.+. - . ..|+ |||+|....+
T Consensus 26 ~~~~~~l~V~nLp~~~----------te~~l~~~F~~~G~i~~v~i~~~~-~-~---------~kg~---afV~f~~~~~ 81 (109)
T 2err_A 26 KSQPKRLHVSNIPFRF----------RDPDLRQMFGQFGKILDVEIIFNE-R-G---------SKGF---GFVTFENSAD 81 (109)
T ss_dssp TTCCCEEEEESCCTTC----------CHHHHHHHGGGTCCCSCEEECCBT-T-B---------CTTE---EEEECCCSHH
T ss_pred CCCCCEEEEECCCCcC----------CHHHHHHHHHhcCCEEEEEEEECC-C-C---------CceE---EEEEECCHHH
Confidence 4556799999999887 889999999999999999998763 1 1 2377 9999999999
Q ss_pred HHHHHHHhcCccceecCceeEEEE
Q 019393 258 FYNTLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 258 F~kAM~aLrGmKL~~kGk~l~a~i 281 (341)
..+|++.|.|..+ +|+.+.+.+
T Consensus 82 A~~Ai~~l~g~~~--~g~~l~V~~ 103 (109)
T 2err_A 82 ADRAREKLHGTVV--EGRKIEVNN 103 (109)
T ss_dssp HHHHHHHHTTCEE--TTEECEEEE
T ss_pred HHHHHHHcCCCEE--CCEEEEEEE
Confidence 9999999999998 787665543
No 87
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.78 E-value=1.4e-08 Score=80.24 Aligned_cols=76 Identities=21% Similarity=0.403 Sum_probs=64.6
Q ss_pred CCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHH
Q 019393 180 EPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFY 259 (341)
Q Consensus 180 RPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~ 259 (341)
..-||||.|||..+ +++.|+.+|++||+|..|.|+.+ .|+ |||+|....+..
T Consensus 24 ~~~~l~V~nl~~~~----------t~~~l~~~F~~~G~i~~v~i~~~---------------~g~---afV~f~~~~~a~ 75 (109)
T 1x4g_A 24 KNCTVYCGGIASGL----------TDQLMRQTFSPFGQIMEIRVFPE---------------KGY---SFVRFSTHESAA 75 (109)
T ss_dssp SCCEEEEECCSSCC----------CHHHHHHHHHHHSCEEEEEEETT---------------TTE---EEEEESSHHHHH
T ss_pred CCcEEEEeCCCCCC----------CHHHHHHHHHhcCCeEEEEEeCC---------------CCE---EEEEECCHHHHH
Confidence 34599999999887 89999999999999999999875 266 999999999999
Q ss_pred HHHHHhcCccceecCceeEEEEEEeecccC
Q 019393 260 NTLKVLCGRSMQKQGSQLKADYEVTWDKDG 289 (341)
Q Consensus 260 kAM~aLrGmKL~~kGk~l~a~ikV~fD~tk 289 (341)
+||++|.|..+ .|+. |+|.|-+.+
T Consensus 76 ~A~~~l~g~~~--~g~~----l~v~~a~~~ 99 (109)
T 1x4g_A 76 HAIVSVNGTTI--EGHV----VKCYWGKES 99 (109)
T ss_dssp HHHHHHTTCEE--TTEE----CEEECCCCC
T ss_pred HHHHHcCCCEE--CCcE----EEEEecCCC
Confidence 99999999887 7865 455565543
No 88
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=98.78 E-value=2.3e-08 Score=78.33 Aligned_cols=68 Identities=18% Similarity=0.310 Sum_probs=59.6
Q ss_pred CCeEEEcCCcc-ccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHH
Q 019393 181 PDTIVIKGVPS-RWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFY 259 (341)
Q Consensus 181 PDTI~l~gLP~-rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~ 259 (341)
.-||||.|||. .+ +++.|+.+|++||.|..|.|+ .|+ |||+|....+..
T Consensus 22 ~~~l~V~nLp~~~~----------t~~~L~~~F~~~G~v~~v~i~-----------------~g~---afV~f~~~~~A~ 71 (97)
T 2xnq_A 22 KSRLFIGNLPLKNV----------SKEDLFRIFSPYGHIMQINIK-----------------NAF---GFIQFDNPQSVR 71 (97)
T ss_dssp TCEEEEESCCSSCC----------CHHHHHHHHGGGSCEEEEEEC-----------------SSE---EEEEESSHHHHH
T ss_pred CCEEEEeCCCcccC----------CHHHHHHHHHhcCCEEEEEEe-----------------CCE---EEEEECCHHHHH
Confidence 45999999998 66 889999999999999999994 266 999999999999
Q ss_pred HHHHHhcCccceecCceeEEE
Q 019393 260 NTLKVLCGRSMQKQGSQLKAD 280 (341)
Q Consensus 260 kAM~aLrGmKL~~kGk~l~a~ 280 (341)
+|++.|.|..+ .|+.+.+.
T Consensus 72 ~Ai~~l~g~~~--~g~~l~V~ 90 (97)
T 2xnq_A 72 DAIEXESQEMN--FGKKLILE 90 (97)
T ss_dssp HHHHHHTTSEE--TTEECEEE
T ss_pred HHHHHcCCCEE--CCEEEEEE
Confidence 99999999988 68765544
No 89
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.77 E-value=1.7e-08 Score=81.18 Aligned_cols=80 Identities=8% Similarity=0.122 Sum_probs=65.1
Q ss_pred CeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHH
Q 019393 182 DTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNT 261 (341)
Q Consensus 182 DTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kA 261 (341)
-||||.|||... +|+.|+.+|++||+|.+|.|+.+ .|+ |||+|+...+..+|
T Consensus 16 ~~l~V~nLp~~~----------te~~L~~~F~~fG~v~~v~i~~~---------------kg~---aFVef~~~~~A~~A 67 (101)
T 2cq1_A 16 RVLHIRKLPGEV----------TETEVIALGLPFGKVTNILMLKG---------------KNQ---AFLELATEEAAITM 67 (101)
T ss_dssp SEEEEESCCTTC----------CHHHHHHTTTTTSCEEEEEEETT---------------TTE---EEEEESSHHHHHHH
T ss_pred CEEEEeCCCCCC----------CHHHHHHHHHhcCCEEEEEEECC---------------CCE---EEEEECCHHHHHHH
Confidence 589999999766 89999999999999999988753 266 99999999999999
Q ss_pred HHHhcCccceecCceeEEEEEEeecccCCCcc
Q 019393 262 LKVLCGRSMQKQGSQLKADYEVTWDKDGFFWD 293 (341)
Q Consensus 262 M~aLrGmKL~~kGk~l~a~ikV~fD~tkhlS~ 293 (341)
++.|.|......|+.+ +|.|-+.+.+..
T Consensus 68 i~~l~~~~~~~~Gr~l----~V~~a~~~~~~~ 95 (101)
T 2cq1_A 68 VNYYSAVTPHLRNQPI----YIQYSNHKELKT 95 (101)
T ss_dssp HHHHHHSCCEETTEEC----EEEECSCSSCCC
T ss_pred HHHhccCCceECCcEE----EEEEcCcccCcC
Confidence 9999766655578765 455556555543
No 90
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.77 E-value=1.2e-08 Score=83.80 Aligned_cols=84 Identities=11% Similarity=0.101 Sum_probs=67.8
Q ss_pred CCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHH
Q 019393 179 QEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDF 258 (341)
Q Consensus 179 eRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F 258 (341)
...-||||.|||... +|+.|+.+|++||+|.+|.|+.+ .|+ |||+|++..+.
T Consensus 14 ~~~~~LfV~nLp~~v----------te~dL~~lF~~fG~V~~v~i~~~---------------kGf---aFVeF~~~~~A 65 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDV----------TEGEVISLGLPFGKVTNLLMLKG---------------KNQ---AFIEMNTEEAA 65 (105)
T ss_dssp CCCCEEEECSCCTTS----------CHHHHHHHHHHHCCEEEEEEETT---------------TTE---EEEEESSHHHH
T ss_pred CCCCEEEEeCCCCCC----------CHHHHHHHHHhcCCEEEEEEEcC---------------CCE---EEEEECCHHHH
Confidence 345699999999887 89999999999999999999863 167 99999999999
Q ss_pred HHHHHHhcCccceecCceeEEEEEEeecccCCCccc
Q 019393 259 YNTLKVLCGRSMQKQGSQLKADYEVTWDKDGFFWDS 294 (341)
Q Consensus 259 ~kAM~aLrGmKL~~kGk~l~a~ikV~fD~tkhlS~~ 294 (341)
.+||+.|.|......|+. |+|.|-+.+-++..
T Consensus 66 ~~Ai~~l~~~~~~l~Gr~----l~V~~A~~~~~~~~ 97 (105)
T 1sjq_A 66 NTMVNYYTSVTPVLRGQP----IYIQFSNHKELKTD 97 (105)
T ss_dssp HHHHHHHTTSCCEETTEE----CCBCCCSSSSCCCT
T ss_pred HHHHHHhccCCceECCEE----EEEEEcCCCCCCcc
Confidence 999999987654457875 45666665555543
No 91
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.77 E-value=2.2e-08 Score=76.77 Aligned_cols=76 Identities=12% Similarity=0.254 Sum_probs=63.8
Q ss_pred CCCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchH
Q 019393 178 KQEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRD 257 (341)
Q Consensus 178 geRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~ 257 (341)
....-||||.|||..+ +++.|+.+|++||+|..|.|+. |+ |||+|....+
T Consensus 7 ~~~~~~l~V~nLp~~~----------t~~~l~~~F~~~G~v~~v~~~~-----------------~~---afV~f~~~~~ 56 (92)
T 2dgt_A 7 GKASTKLHVGNISPTC----------TNQELRAKFEEYGPVIECDIVK-----------------DY---AFVHMERAED 56 (92)
T ss_dssp CCSSEEEEEESCCSSC----------CHHHHHHHHHTTSCCCEEEECS-----------------SE---EEEEESCHHH
T ss_pred CCCCCEEEEeCCCCCC----------CHHHHHHHHHhcCCeEEEEEEC-----------------CE---EEEEECCHHH
Confidence 3556799999999887 8999999999999999999982 23 9999999999
Q ss_pred HHHHHHHhcCccceecCceeEEEEEEeecccC
Q 019393 258 FYNTLKVLCGRSMQKQGSQLKADYEVTWDKDG 289 (341)
Q Consensus 258 F~kAM~aLrGmKL~~kGk~l~a~ikV~fD~tk 289 (341)
..+|++.|.|..+ .|+. |+|.|.+.+
T Consensus 57 a~~A~~~l~g~~~--~g~~----l~V~~a~~~ 82 (92)
T 2dgt_A 57 AVEAIRGLDNTEF--QGKR----MHVQLSTSR 82 (92)
T ss_dssp HHHHHHHHTTEEE--TTEE----EEEEESSCC
T ss_pred HHHHHHHhCCCee--CCcE----EEEEEccCC
Confidence 9999999999988 6765 455555543
No 92
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.76 E-value=2e-08 Score=77.90 Aligned_cols=73 Identities=15% Similarity=0.275 Sum_probs=62.7
Q ss_pred CCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHH
Q 019393 179 QEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDF 258 (341)
Q Consensus 179 eRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F 258 (341)
..+-||||.|||..+ +++.|+.+|++||+|..|.|+.. .|+ |||+|....+.
T Consensus 13 ~~~~~l~V~nlp~~~----------t~~~l~~~F~~~G~i~~v~~~~~---------------kg~---afV~f~~~~~a 64 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDI----------TEEEMRKLFEKYGKAGEVFIHKD---------------KGF---GFIRLETRTLA 64 (99)
T ss_dssp CCTTEEEEESCCTTC----------CHHHHHHHTSTTCCCSEEEEETT---------------TTE---EEEECSSSHHH
T ss_pred CCCCEEEEeCCCCCC----------CHHHHHHHHhhcCCeEEEEEecC---------------CCE---EEEEECCHHHH
Confidence 344599999999888 89999999999999999999843 266 99999999999
Q ss_pred HHHHHHhcCccceecCceeEEEE
Q 019393 259 YNTLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 259 ~kAM~aLrGmKL~~kGk~l~a~i 281 (341)
.+|+++|.|..+ .|+.+.+.+
T Consensus 65 ~~a~~~l~g~~~--~g~~l~v~~ 85 (99)
T 2cpj_A 65 EIAKVELDNMPL--RGKQLRVRF 85 (99)
T ss_dssp HHHHHHHTTCCB--TTBCCEEEE
T ss_pred HHHHHHhCCCEe--CCceEEEEE
Confidence 999999999998 787655443
No 93
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=9.6e-09 Score=80.04 Aligned_cols=74 Identities=14% Similarity=0.144 Sum_probs=63.0
Q ss_pred CCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhc-cCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHH
Q 019393 180 EPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFST-FGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDF 258 (341)
Q Consensus 180 RPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~-FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F 258 (341)
..-||||.|||..+ +++.|+.+|++ ||+|..|.|+.+. .++ ..|+ |||+|....+.
T Consensus 8 ~~~~l~V~nLp~~~----------t~~~l~~~F~~~~G~v~~v~i~~~~-~g~---------~~g~---afV~f~~~~~a 64 (104)
T 2dhg_A 8 PEYSLFVGDLTPDV----------DDGMLYEFFVKVYPSCRGGKVVLDQ-TGV---------SKGY---GFVKFTDELEQ 64 (104)
T ss_dssp CCCCEEEECCCTTC----------CHHHHHHHHHHHCTTEEEEEEEECT-TCC---------EEEE---EEEEESCHHHH
T ss_pred CCcEEEEeCCCCCC----------CHHHHHHHHHHhCCCeEEEEEEECC-CCC---------ccce---EEEEECCHHHH
Confidence 34699999999887 89999999999 9999999998874 433 2366 99999999999
Q ss_pred HHHHHHhcCcc-ceecCceeE
Q 019393 259 YNTLKVLCGRS-MQKQGSQLK 278 (341)
Q Consensus 259 ~kAM~aLrGmK-L~~kGk~l~ 278 (341)
.+||++|.|.. + .|+.+.
T Consensus 65 ~~A~~~l~g~~~~--~g~~l~ 83 (104)
T 2dhg_A 65 KRALTECQGAVGL--GSKPVR 83 (104)
T ss_dssp HHHHHHTTTCCSS--SSSCCC
T ss_pred HHHHHHccCCccc--CCEeEE
Confidence 99999999988 7 676543
No 94
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=98.75 E-value=2.3e-08 Score=81.38 Aligned_cols=108 Identities=13% Similarity=0.234 Sum_probs=81.3
Q ss_pred HHHhhccCeeEEecCccceeEEEcccCCCchhhhhcHHHHhhccCCCCCCCCCCCCeEEEcCCccccccCCCCCCCCcHH
Q 019393 127 YIVEKMDGIELNLEGVKYKLSVVIPIADDFEKMRKDWEEFYAFGNRGYSRGKQEPDTIVIKGVPSRWFAEPRVSSKPSML 206 (341)
Q Consensus 127 ~l~~kLdG~~lkLsGf~~~LkV~a~es~dFp~~rhdWesff~d~~~~~~~~geRPDTI~l~gLP~rWFa~~~~s~kPSE~ 206 (341)
..++.|+|..+. | ..++|..+.... . ......-+|+|.|||..+ +++
T Consensus 56 ~A~~~l~~~~~~--g--~~i~v~~~~~~~------------------~-~~~~~~~~l~v~nl~~~~----------t~~ 102 (166)
T 3md3_A 56 IALQTLNGKQIE--N--NIVKINWAFQSQ------------------Q-SSSDDTFNLFVGDLNVNV----------DDE 102 (166)
T ss_dssp HHHHHHTTCEET--T--EECEEEECCCCC------------------C-CCCTTCEEEEEESCCTTC----------CHH
T ss_pred HHHHHcCCCccC--C--CeeEEEEcCCCC------------------C-CCCCCCceEEECCCCCCC----------CHH
Confidence 456788998773 3 455565443200 0 112345699999999888 889
Q ss_pred HHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHHHHhcCccceecCceeEEEE
Q 019393 207 VTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 207 vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM~aLrGmKL~~kGk~l~a~i 281 (341)
.|+.+|++||.|..+.|+.+...+. ..|. |||+|....+..+|++.|.|..+ .|+.+.+++
T Consensus 103 ~l~~~f~~~G~i~~~~i~~~~~~~~---------~~g~---afV~f~~~~~A~~A~~~l~g~~~--~g~~i~v~~ 163 (166)
T 3md3_A 103 TLRNAFKDFPSYLSGHVMWDMQTGS---------SRGY---GFVSFTSQDDAQNAMDSMQGQDL--NGRPLRINW 163 (166)
T ss_dssp HHHHHHTTSTTEEEEEEEECTTTCC---------EEEE---EEEEESCHHHHHHHHHHHTTCEE--TTEECEEEE
T ss_pred HHHHHHhccCCeeEEEEEecCCCCC---------cceE---EEEEeCCHHHHHHHHHHhCCCcc--CCcEEEEEe
Confidence 9999999999999999998754433 2366 99999999999999999999998 787766553
No 95
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=98.75 E-value=1.5e-08 Score=84.36 Aligned_cols=76 Identities=18% Similarity=0.393 Sum_probs=64.6
Q ss_pred CCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHH
Q 019393 181 PDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYN 260 (341)
Q Consensus 181 PDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~k 260 (341)
.-||+|.|||..+ +++.|+.+|++||+|..|.|+.+...++. .|+ |||+|....+..+
T Consensus 47 ~~~l~V~nLp~~~----------te~~L~~~F~~~G~i~~v~i~~~~~~g~~---------~G~---afV~F~~~~~A~~ 104 (135)
T 2lea_A 47 MTSLKVDNLTYRT----------SPDTLRRVFEKYGRVGDVYIPRDRYTKES---------RGF---AFVRFHDKRDAED 104 (135)
T ss_dssp CCCEEEECCCSSC----------HHHHHHHHHGGGSCCSEEECCCCSSSSSC---------CSC---CEEECSCHHHHHH
T ss_pred CCEEEEeCCCCCC----------CHHHHHHHHHhcCCEEEEEEEecCCCCcc---------ceE---EEEEECCHHHHHH
Confidence 4589999999887 89999999999999999999876544432 367 9999999999999
Q ss_pred HHHHhcCccceecCceeEEE
Q 019393 261 TLKVLCGRSMQKQGSQLKAD 280 (341)
Q Consensus 261 AM~aLrGmKL~~kGk~l~a~ 280 (341)
|+++|.|..+ .|+.+.+.
T Consensus 105 Ai~~l~g~~i--~g~~l~V~ 122 (135)
T 2lea_A 105 AMDAMDGAVL--DGRELRVQ 122 (135)
T ss_dssp HHTTTTTCCS--SSSCCEEE
T ss_pred HHHHcCCCEE--CCEEEEEE
Confidence 9999999998 78765443
No 96
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=98.75 E-value=1.7e-08 Score=78.98 Aligned_cols=78 Identities=18% Similarity=0.360 Sum_probs=62.3
Q ss_pred CCCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCC-CCCCCCCCCCCCcccceeEEEEEEeccch
Q 019393 178 KQEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDD-DPGKDADEDGGDIISGLHCKIVVQFEKYR 256 (341)
Q Consensus 178 geRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~D-pyr~~~~~~~g~~~~gL~feayVQy~ey~ 256 (341)
...+-||||.|||..+ +++.|+.+|+.|| |..|.|+.+. ..++ ..|+ |||+|....
T Consensus 16 ~~~~~~l~V~nLp~~~----------t~~~l~~~F~~~G-i~~v~i~~~~~~~g~---------~~g~---afV~f~~~~ 72 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDV----------TEESIKEFFRGLN-ISAVRLPREPSNPER---------LKGF---GYAEFEDLD 72 (100)
T ss_dssp ----CEEEESCCSSCC----------SSSHHHHHSCSSC-EEEEECSCCTTTTCC---------CCSC---EEEEECCHH
T ss_pred CCCCcEEEEeCCCCCC----------CHHHHHHHHHhcC-CeEEEEEecCCcCCc---------cCeE---EEEEECCHH
Confidence 3455699999999887 7788999999999 9999998764 2333 2377 999999999
Q ss_pred HHHHHHHHhcCccceecCceeEEEE
Q 019393 257 DFYNTLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 257 ~F~kAM~aLrGmKL~~kGk~l~a~i 281 (341)
+..+|| .|.|..+ .|+.+.+.+
T Consensus 73 ~a~~Ai-~l~g~~~--~g~~l~V~~ 94 (100)
T 2j76_E 73 SLLSAL-SLNEESL--GNRRIRVDV 94 (100)
T ss_dssp HHHHHH-HTTTCCB--TTBCCCCEE
T ss_pred HHHHHH-hcCCCEE--CCeEEEEEe
Confidence 999999 9999988 787765443
No 97
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.74 E-value=3.1e-08 Score=74.28 Aligned_cols=72 Identities=17% Similarity=0.225 Sum_probs=61.8
Q ss_pred CCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHH
Q 019393 179 QEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDF 258 (341)
Q Consensus 179 eRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F 258 (341)
...-||+|.|||..+ +++.|+.+|++||+|..|.|+.. .|. |||+|....+.
T Consensus 10 ~~~~~l~V~~l~~~~----------t~~~l~~~f~~~G~i~~~~~~~~---------------kg~---afV~f~~~~~A 61 (85)
T 2ytc_A 10 KTITTLYVGGLGDTI----------TETDLRNHFYQFGEIRTITVVQR---------------QQC---AFIQFATRQAA 61 (85)
T ss_dssp SSCCCEEEECCTTTS----------CHHHHHHHHHTTSCEEEEEEEGG---------------GTE---EEEEESSHHHH
T ss_pred CCccEEEEcCCCCCC----------CHHHHHHHHHhCCCEeEEEEECC---------------CCE---EEEEECCHHHH
Confidence 445699999999887 89999999999999999999852 256 99999999999
Q ss_pred HHHHHHh-cCccceecCceeEEE
Q 019393 259 YNTLKVL-CGRSMQKQGSQLKAD 280 (341)
Q Consensus 259 ~kAM~aL-rGmKL~~kGk~l~a~ 280 (341)
.+|+++| .|..+ .|+.+.+.
T Consensus 62 ~~a~~~l~~~~~~--~g~~l~v~ 82 (85)
T 2ytc_A 62 EVAAEKSFNKLIV--NGRRLNVK 82 (85)
T ss_dssp HHHHHTTTTTCEE--TTEECCEE
T ss_pred HHHHHHhcCCeeE--CCCEEEEE
Confidence 9999999 88877 78765554
No 98
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=98.74 E-value=2.5e-08 Score=77.33 Aligned_cols=71 Identities=17% Similarity=0.290 Sum_probs=61.9
Q ss_pred CCCeEEEcCCcc-ccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHH
Q 019393 180 EPDTIVIKGVPS-RWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDF 258 (341)
Q Consensus 180 RPDTI~l~gLP~-rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F 258 (341)
..-||||.|||. .+ +++.|+.+|++||.|..|.|+ .|+ |||+|....+.
T Consensus 9 ~~~~l~V~nlp~~~~----------t~~~l~~~F~~~G~v~~v~i~-----------------~g~---afV~f~~~~~A 58 (96)
T 2kvi_A 9 PKSRLFIGNLPLKNV----------SKEDLFRIFSPYGHIMQINIK-----------------NAF---GFIQFDNPQSV 58 (96)
T ss_dssp CCEEEEEESSTTSCC----------CHHHHHHHHTTTCCCCEEEEE-----------------TTE---EEEEESCHHHH
T ss_pred CCCEEEEeCCCcccC----------CHHHHHHHHHhcCCEEEEEEe-----------------CCE---EEEEECCHHHH
Confidence 345899999998 66 889999999999999999995 166 99999999999
Q ss_pred HHHHHHhcCccceecCceeEEEEE
Q 019393 259 YNTLKVLCGRSMQKQGSQLKADYE 282 (341)
Q Consensus 259 ~kAM~aLrGmKL~~kGk~l~a~ik 282 (341)
.+|+++|.|..+ .|+.+.+.+.
T Consensus 59 ~~A~~~l~g~~~--~g~~l~V~~a 80 (96)
T 2kvi_A 59 RDAIECESQEMN--FGKKLILEVS 80 (96)
T ss_dssp HHHHHHHTCSSC--BTTTBCEEEE
T ss_pred HHHHHHcCCCee--CCcEEEEEEc
Confidence 999999999988 6887766553
No 99
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=98.74 E-value=3.2e-08 Score=79.09 Aligned_cols=79 Identities=14% Similarity=0.168 Sum_probs=61.7
Q ss_pred CCCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchH
Q 019393 178 KQEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRD 257 (341)
Q Consensus 178 geRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~ 257 (341)
...+-||+|.|||..+ +++.|+.+|+.||+|..|.|+.+...+. ..|+ |||+|....+
T Consensus 22 ~~~~~~lfV~nLp~~~----------te~~L~~~F~~~G~i~~v~i~~~~~tg~---------~kg~---afV~f~~~~~ 79 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQT----------TQEGLREYFGQFGEVKECLVMRDPLTKR---------SRGF---GFVTFMDQAG 79 (109)
T ss_dssp ----CCEEEESCCTTC----------CHHHHHHHHTTTSCEEEEEECCCTTTCC---------CTTC---EEEEESSHHH
T ss_pred CCCCCEEEEeCCCCCC----------CHHHHHHHHHccCCeEEEEEEECCCCCC---------cCcE---EEEEECCHHH
Confidence 4566799999999888 8999999999999999999987643333 2377 9999999999
Q ss_pred HHHHHHHhcCccceecCceeEEEE
Q 019393 258 FYNTLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 258 F~kAM~aLrGmKL~~kGk~l~a~i 281 (341)
..+||+.+ |..| .|+.+.+.+
T Consensus 80 A~~Ai~~~-~~~l--~g~~l~V~~ 100 (109)
T 2rs2_A 80 VDKVLAQS-RHEL--DSKTIDPKV 100 (109)
T ss_dssp HHHHHHSS-CEEE--TTEEEEEEE
T ss_pred HHHHHHHC-CCcC--CCEEEEEEE
Confidence 99999986 5444 787765443
No 100
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=98.74 E-value=7.5e-08 Score=81.18 Aligned_cols=79 Identities=15% Similarity=0.305 Sum_probs=66.2
Q ss_pred CCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHH
Q 019393 179 QEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDF 258 (341)
Q Consensus 179 eRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F 258 (341)
...-||+|.|||..+ +++.|+.+|++||.|..|.|+.+...+. ..|. |||+|....+.
T Consensus 112 ~~~~~l~v~nl~~~~----------~~~~l~~~f~~~G~v~~~~~~~~~~~~~---------~~g~---afV~f~~~~~a 169 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYL----------NDDQVKELLTSFGPLKAFNLVKDSATGL---------SKGY---AFCEYVDINVT 169 (198)
T ss_dssp CCCCEEEEECCCTTC----------CHHHHHHHHHTBSCEEEEEEEECTTTCS---------EEEE---EEEEESSSSHH
T ss_pred CCCCEEEEeCCCCCC----------CHHHHHHHHHHcCCccEEEEeecCCCCC---------cceE---EEEEECCHHHH
Confidence 556799999999988 8899999999999999999987643332 2366 99999999999
Q ss_pred HHHHHHhcCccceecCceeEEEE
Q 019393 259 YNTLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 259 ~kAM~aLrGmKL~~kGk~l~a~i 281 (341)
.+|+++|.|..+ .|+.+.+.+
T Consensus 170 ~~A~~~l~g~~~--~g~~l~v~~ 190 (198)
T 2yh0_A 170 DQAIAGLNGMQL--GDKKLLVQR 190 (198)
T ss_dssp HHHHHHHTTCEE--TTEECEEEE
T ss_pred HHHHHHcCCCEE--CCEEEEEEE
Confidence 999999999988 787655443
No 101
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=98.73 E-value=2.9e-08 Score=81.98 Aligned_cols=78 Identities=15% Similarity=0.301 Sum_probs=66.7
Q ss_pred CCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHH
Q 019393 180 EPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFY 259 (341)
Q Consensus 180 RPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~ 259 (341)
.+-||+|.|||..+ +++.|+.+|++||.|..|.|+.+...+. ..|. |||+|....+..
T Consensus 93 ~~~~l~v~nlp~~~----------t~~~l~~~f~~~G~v~~v~i~~~~~~g~---------~~g~---afV~f~~~~~A~ 150 (172)
T 2g4b_A 93 GAHKLFIGGLPNYL----------NDDQVKELLTSFGPLKAFNLVKDSATGL---------SKGY---AFCEYVDINVTD 150 (172)
T ss_dssp TTTCEEEECCCTTC----------CHHHHHHHHHTTSCEEEEEEEECTTTCS---------EEEE---EEEEESSTTHHH
T ss_pred CCCEEEEEcCCCcC----------CHHHHHHHHHhcCCceEEEEEecCCCCC---------cceE---EEEEeCCHHHHH
Confidence 36799999999887 8899999999999999999987644433 2366 999999999999
Q ss_pred HHHHHhcCccceecCceeEEEE
Q 019393 260 NTLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 260 kAM~aLrGmKL~~kGk~l~a~i 281 (341)
+|+++|.|..+ .|+.+.+.+
T Consensus 151 ~A~~~l~g~~~--~g~~l~V~~ 170 (172)
T 2g4b_A 151 QAIAGLNGMQL--GDKKLLVQR 170 (172)
T ss_dssp HHHHHHTTCEE--TTEECEEEE
T ss_pred HHHHHcCCCEE--CCeEEEEEe
Confidence 99999999988 788777654
No 102
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=98.73 E-value=2.8e-08 Score=81.37 Aligned_cols=77 Identities=18% Similarity=0.150 Sum_probs=64.7
Q ss_pred CCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccC-ceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchH
Q 019393 179 QEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFG-KIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRD 257 (341)
Q Consensus 179 eRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FG-kIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~ 257 (341)
...-+|+|.|||... +++-|+.+|+.|| +|..++|+..++ .|+ |||+|....+
T Consensus 26 ~~~~~l~VgnLp~~~----------te~dL~~~F~~~G~~v~~v~i~~~~~-------------rGf---aFV~F~~~e~ 79 (111)
T 2jvr_A 26 AKRYRITMKNLPEGC----------SWQDLKDLARENSLETTFSSVNTRDF-------------DGT---GALEFPSEEI 79 (111)
T ss_dssp CCCEEEEEECSSCCC----------CHHHHHHHHHHHTCCCSEEECSSCSS-------------SCC---EEEEESSHHH
T ss_pred CCCCEEEEECCCCCC----------CHHHHHHHHHHhCCeeEEEEEEcCCC-------------CCE---EEEEECCHHH
Confidence 345599999999776 8899999999999 999999975431 266 9999999999
Q ss_pred HHHHHHHhcCccceecCceeEEEEEEeecc
Q 019393 258 FYNTLKVLCGRSMQKQGSQLKADYEVTWDK 287 (341)
Q Consensus 258 F~kAM~aLrGmKL~~kGk~l~a~ikV~fD~ 287 (341)
..+|++.|.|..+ +|+. |+|.+++
T Consensus 80 A~~Ai~~lng~~l--~Gr~----i~V~~a~ 103 (111)
T 2jvr_A 80 LVEALERLNNIEF--RGSV----ITVERDD 103 (111)
T ss_dssp HHHHHHHTTTEEE--TTEE----EEEEESC
T ss_pred HHHHHHHcCCCEE--CCeE----EEEEECC
Confidence 9999999999988 8875 5566655
No 103
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.73 E-value=5.5e-08 Score=76.68 Aligned_cols=79 Identities=19% Similarity=0.296 Sum_probs=64.7
Q ss_pred CCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHH
Q 019393 179 QEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDF 258 (341)
Q Consensus 179 eRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F 258 (341)
..+-||||.|||..+ +++.|+.+|++||+|..|.|+... . ..|+ |||+|..-.+.
T Consensus 20 ~~~~~l~V~nLp~~~----------t~~~l~~~F~~~G~v~~~~i~~~~---~---------~~g~---afV~f~~~~~A 74 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDI----------RTKDIEDVFYKYGAIRDIDLKNRR---G---------GPPF---AFVEFEDPRDA 74 (109)
T ss_dssp CCSSEEEEESCCTTC----------CHHHHHHHHGGGSCEEEEEECCSS---S---------SSCC---EEEEESCHHHH
T ss_pred CCCCEEEEeCCCCCC----------CHHHHHHHHHhcCCeEEEEEEECC---C---------CCcE---EEEEECCHHHH
Confidence 445699999999887 889999999999999999996532 1 2266 99999999999
Q ss_pred HHHHHHhcCccceecCceeEEEEEEeeccc
Q 019393 259 YNTLKVLCGRSMQKQGSQLKADYEVTWDKD 288 (341)
Q Consensus 259 ~kAM~aLrGmKL~~kGk~l~a~ikV~fD~t 288 (341)
.+||+.|.|..+ .|+. |+|.|-+.
T Consensus 75 ~~A~~~l~g~~~--~g~~----l~V~~a~~ 98 (109)
T 1x4a_A 75 EDAVYGRDGYDY--DGYR----LRVEFPRS 98 (109)
T ss_dssp HHHHHHHTTCEE--TTEE----CEEECCCC
T ss_pred HHHHHHcCCCEE--CCeE----EEEEEccc
Confidence 999999999988 7765 45555543
No 104
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.73 E-value=5.7e-08 Score=74.11 Aligned_cols=71 Identities=17% Similarity=0.302 Sum_probs=61.1
Q ss_pred CCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHH
Q 019393 179 QEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDF 258 (341)
Q Consensus 179 eRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F 258 (341)
..+-||||.|||..+ +++.|+.+|++||.|..|.|+. |+ |||+|....+.
T Consensus 7 ~~~~~l~V~nlp~~~----------t~~~l~~~F~~~G~v~~~~~~~-----------------~~---afV~f~~~~~a 56 (90)
T 2dnp_A 7 GNTWKIFVGNVSAAC----------TSQELRSLFERRGRVIECDVVK-----------------DY---AFVHMEKEADA 56 (90)
T ss_dssp CCSCCEEEESCCTTC----------CHHHHHHHHHHHSCEEEEEECS-----------------SC---EEEEESCHHHH
T ss_pred CCCCEEEEeCCCCCC----------CHHHHHHHHHcCCCEEEEEEEC-----------------CE---EEEEECCHHHH
Confidence 445699999999987 8999999999999999999982 23 99999999999
Q ss_pred HHHHHHhcCccceecCceeEEEE
Q 019393 259 YNTLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 259 ~kAM~aLrGmKL~~kGk~l~a~i 281 (341)
.+|++.|.|..+ .|+.+.+.+
T Consensus 57 ~~A~~~l~g~~~--~g~~l~v~~ 77 (90)
T 2dnp_A 57 KAAIAQLNGKEV--KGKRINVEL 77 (90)
T ss_dssp HHHHHHHTTCEE--TTEECEEEE
T ss_pred HHHHHHhCCCEE--CCcEEEEEE
Confidence 999999999888 787654433
No 105
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=98.72 E-value=3.1e-08 Score=77.55 Aligned_cols=74 Identities=14% Similarity=0.381 Sum_probs=62.9
Q ss_pred CCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHH
Q 019393 180 EPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFY 259 (341)
Q Consensus 180 RPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~ 259 (341)
..-||||.|||..+ +++.|+.+|++||+|..|.|+- |+ |||+|....+..
T Consensus 10 ~~~~l~V~nl~~~~----------t~~~l~~~F~~~G~i~~v~~~~-----------------~~---afV~f~~~~~a~ 59 (103)
T 2dgu_A 10 KVKVLFVRNLANTV----------TEEILEKAFSQFGKLERVKKLK-----------------DY---AFIHFDERDGAV 59 (103)
T ss_dssp CCCCEEEECCCTTC----------CHHHHHHHHHHHSCEEEEEECS-----------------SC---EEEEESSHHHHH
T ss_pred CCCEEEEeCCCCCC----------CHHHHHHHHHhcCCEEEEEEEC-----------------CE---EEEEeCCHHHHH
Confidence 34689999999988 8999999999999999999971 33 999999999999
Q ss_pred HHHHHhcCccceecCceeEEEEEEeecccC
Q 019393 260 NTLKVLCGRSMQKQGSQLKADYEVTWDKDG 289 (341)
Q Consensus 260 kAM~aLrGmKL~~kGk~l~a~ikV~fD~tk 289 (341)
+||++|.|..+ .|+. |+|.|.+.+
T Consensus 60 ~A~~~l~g~~~--~g~~----l~v~~a~~~ 83 (103)
T 2dgu_A 60 KAMEEMNGKDL--EGEN----IEIVFAKPP 83 (103)
T ss_dssp HHHHHHTTEEE--TTEE----EEEEECCCC
T ss_pred HHHHHHCCCcc--CCCE----EEEEEcCCC
Confidence 99999999987 6764 556665543
No 106
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.72 E-value=2.4e-08 Score=79.60 Aligned_cols=75 Identities=15% Similarity=0.251 Sum_probs=62.4
Q ss_pred CCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHH
Q 019393 181 PDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYN 260 (341)
Q Consensus 181 PDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~k 260 (341)
+-||||.|||..+ +++.|+.+|+.||+|..|.|+.+...+.. .|+ |||+|....+..+
T Consensus 27 ~~~l~V~nLp~~~----------te~~l~~~F~~~G~i~~v~i~~~~~~g~~---------~g~---afV~f~~~~~a~~ 84 (116)
T 1x4b_A 27 FRKLFIGGLSFET----------TEESLRNYYEQWGKLTDCVVMRDPASKRS---------RGF---GFVTFSSMAEVDA 84 (116)
T ss_dssp HTEEEEECCTTCC----------CHHHHHHHHTSSCCCSEEEEECCTTTSSC---------CSE---EEEECSSHHHHHH
T ss_pred CCEEEEeCCCCCC----------CHHHHHHHHHhcCCEEEEEEEECCCCCCc---------Cce---EEEEeCCHHHHHH
Confidence 4699999999888 89999999999999999999876444332 367 9999999999999
Q ss_pred HHHHhcCccceecCceeEEE
Q 019393 261 TLKVLCGRSMQKQGSQLKAD 280 (341)
Q Consensus 261 AM~aLrGmKL~~kGk~l~a~ 280 (341)
||+. .|..| .|+.+.+.
T Consensus 85 Ai~~-~~~~~--~g~~l~V~ 101 (116)
T 1x4b_A 85 AMAA-RPHSI--DGRVVEPK 101 (116)
T ss_dssp HHTS-CSEEE--TTEEEEEE
T ss_pred HHHh-CCcEE--CCEEEEEE
Confidence 9998 88776 78755443
No 107
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=98.72 E-value=2.5e-08 Score=79.91 Aligned_cols=70 Identities=16% Similarity=0.378 Sum_probs=61.7
Q ss_pred CCCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchH
Q 019393 178 KQEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRD 257 (341)
Q Consensus 178 geRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~ 257 (341)
...+-||||.|||..+ +++.|+.+|++||.|.+|.|+ .|+ |||+|....+
T Consensus 28 ~~~~~~l~V~nLp~~~----------t~~~L~~~F~~~G~i~~v~i~-----------------kg~---afV~f~~~~~ 77 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDV----------QESELNEIFGPFGPMKEVKIL-----------------NGF---AFVEFEEAES 77 (108)
T ss_dssp CCSCSEEEECSSCTTC----------CHHHHHHHHTTTSCCCEEEEE-----------------TTE---EEEECSSHHH
T ss_pred CCCCCEEEEECCCCCC----------CHHHHHHHHHhcCCEEEEEEE-----------------CCE---EEEEECCHHH
Confidence 3455699999999987 889999999999999999998 166 9999999999
Q ss_pred HHHHHHHhcCccceecCceeEE
Q 019393 258 FYNTLKVLCGRSMQKQGSQLKA 279 (341)
Q Consensus 258 F~kAM~aLrGmKL~~kGk~l~a 279 (341)
..+|+++|.|..+ .|+.+.+
T Consensus 78 A~~Ai~~l~g~~~--~g~~l~V 97 (108)
T 2jvo_A 78 AAKAIEEVHGKSF--ANQPLEV 97 (108)
T ss_dssp HHHHHHHHTTCEE--TTEECEE
T ss_pred HHHHHHHcCCCEE--CCeEEEE
Confidence 9999999999998 7876543
No 108
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=98.72 E-value=1.8e-08 Score=81.01 Aligned_cols=74 Identities=15% Similarity=0.230 Sum_probs=62.4
Q ss_pred CeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHH
Q 019393 182 DTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNT 261 (341)
Q Consensus 182 DTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kA 261 (341)
-||||.|||..+ +++.|+.+|++||.|..|.|+.+...+. ..|+ |||+|....+..+|
T Consensus 37 ~~l~V~nlp~~~----------t~~~l~~~F~~~G~i~~v~i~~~~~~~~---------~~g~---afV~f~~~~~a~~A 94 (124)
T 2jwn_A 37 RSVYVGNVDYGS----------TAQDLEAHFSSCGSINRITILCDKFSGH---------PKGY---AYIEFAERNSVDAA 94 (124)
T ss_dssp TEEEEEEECTTC----------CHHHHHHHHHTTSCEEEEEEEEECTTSS---------CEEE---EEEEESSHHHHHHH
T ss_pred CEEEEeCCCCCC----------CHHHHHHHHHhcCCEEEEEEEecCCCCC---------cccE---EEEEECCHHHHHHH
Confidence 499999999887 8999999999999999999988643333 2366 99999999999999
Q ss_pred HHHhcCccceecCceeEEE
Q 019393 262 LKVLCGRSMQKQGSQLKAD 280 (341)
Q Consensus 262 M~aLrGmKL~~kGk~l~a~ 280 (341)
| .|.|..+ .|+.+.+.
T Consensus 95 ~-~l~g~~~--~g~~l~V~ 110 (124)
T 2jwn_A 95 V-AMDETVF--RGRTIKVL 110 (124)
T ss_dssp H-TTTTCEE--TTEECEEE
T ss_pred H-hcCCCeE--CCeEEEEE
Confidence 9 8999988 78765443
No 109
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.72 E-value=4.1e-08 Score=77.84 Aligned_cols=69 Identities=16% Similarity=0.328 Sum_probs=60.7
Q ss_pred CCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHH
Q 019393 179 QEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDF 258 (341)
Q Consensus 179 eRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F 258 (341)
..+-||||.|||..+ +++.|+.+|+.||+|..|.|+.+. .+. ..|+ |||+|....+.
T Consensus 23 ~~~~~l~V~nlp~~~----------t~~~l~~~F~~~G~i~~~~i~~~~-~g~---------~~g~---afV~f~~~~~a 79 (114)
T 1x5o_A 23 QDPTNLYISNLPLSM----------DEQELENMLKPFGQVISTRILRDS-SGT---------SRGV---GFARMESTEKC 79 (114)
T ss_dssp CCTTEEEEESCCTTC----------CHHHHHHTTTTTSCEEEEEEEECS-SSC---------EEEE---EEEEESCHHHH
T ss_pred CCCCEEEEeCCCCCC----------CHHHHHHHHHhcCCEEEEEEEECC-CCC---------cceE---EEEEECCHHHH
Confidence 455799999999988 899999999999999999998874 333 2366 99999999999
Q ss_pred HHHHHHhcCccc
Q 019393 259 YNTLKVLCGRSM 270 (341)
Q Consensus 259 ~kAM~aLrGmKL 270 (341)
.+||+.|.|..+
T Consensus 80 ~~A~~~l~g~~~ 91 (114)
T 1x5o_A 80 EAVIGHFNGKFI 91 (114)
T ss_dssp HHHHHHHBTCCC
T ss_pred HHHHHHhCCCEE
Confidence 999999999998
No 110
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.72 E-value=1.3e-08 Score=79.60 Aligned_cols=76 Identities=14% Similarity=0.259 Sum_probs=63.5
Q ss_pred CCCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchH
Q 019393 178 KQEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRD 257 (341)
Q Consensus 178 geRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~ 257 (341)
...+-||||.|||..+ +++.|+.+|+.||+|..|.|+.+...+. ..|+ |||+|....+
T Consensus 13 ~~~~~~l~V~nlp~~~----------t~~~l~~~F~~~G~v~~v~i~~~~~~g~---------~~g~---afV~f~~~~~ 70 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWST----------TQETLRSYFSQYGEVVDCVIMKDKTTNQ---------SRGF---GFVKFKDPNC 70 (105)
T ss_dssp SSSSSEECCBSCCTTC----------CHHHHHHHHHTTSCEEEEEEEECSSSCC---------EEEE---EEEEESSTTH
T ss_pred CCCCCEEEEeCCCCCC----------CHHHHHHHHHhcCCeEEEEEeeCCCCCC---------cceE---EEEEECCHHH
Confidence 4556799999999887 8999999999999999999988744433 2366 9999999999
Q ss_pred HHHHHHHhcCccceecCceeE
Q 019393 258 FYNTLKVLCGRSMQKQGSQLK 278 (341)
Q Consensus 258 F~kAM~aLrGmKL~~kGk~l~ 278 (341)
..+||+. .|..| .|+.+.
T Consensus 71 a~~a~~~-~~~~~--~g~~l~ 88 (105)
T 2dh8_A 71 VGTVLAS-RPHTL--DGRNID 88 (105)
T ss_dssp HHHHHHH-CSEEE--TTEEEB
T ss_pred HHHHHHh-CCCeE--CCEEEE
Confidence 9999999 88877 776543
No 111
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=98.72 E-value=1.8e-08 Score=78.31 Aligned_cols=67 Identities=18% Similarity=0.244 Sum_probs=58.9
Q ss_pred CeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHH
Q 019393 182 DTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNT 261 (341)
Q Consensus 182 DTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kA 261 (341)
-||||.|||..+ +++.|+.+|+.||.|.+|.|+. ..|+ |||+|....+..+|
T Consensus 28 ~~l~V~nlp~~~----------~~~~l~~~f~~~G~i~~~~~~~---------------~~g~---afV~f~~~~~A~~A 79 (101)
T 2la4_A 28 TTAYIGNIPHFA----------TEADLIPLFQNFGFILDFKHYP---------------EKGC---CFIKYDTHEQAAVC 79 (101)
T ss_dssp CEEEEESCCTTC----------CHHHHHHHHHTTSCCSEEEEET---------------TTTE---EEEECSSHHHHHHH
T ss_pred CEEEEcCCCccc----------CHHHHHHHHHhCCCEEEEEEec---------------CCCE---EEEEECCHHHHHHH
Confidence 499999999887 8999999999999999999981 1266 99999999999999
Q ss_pred HHHhcCccceecCceeE
Q 019393 262 LKVLCGRSMQKQGSQLK 278 (341)
Q Consensus 262 M~aLrGmKL~~kGk~l~ 278 (341)
+++|.|..+ .|+.+.
T Consensus 80 i~~l~g~~~--~g~~l~ 94 (101)
T 2la4_A 80 IVALANFPF--QGRNLR 94 (101)
T ss_dssp HHHHTTCEE--TTEECC
T ss_pred HHHhCCCeE--CCeEEE
Confidence 999999988 676544
No 112
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.71 E-value=4.8e-08 Score=76.28 Aligned_cols=78 Identities=21% Similarity=0.364 Sum_probs=64.7
Q ss_pred CCCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchH
Q 019393 178 KQEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRD 257 (341)
Q Consensus 178 geRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~ 257 (341)
...+-||||.|||..+ +++.|+.+|++|| |..|.|+.+...++ ..|+ |||+|....+
T Consensus 12 ~~~~~~l~V~nLp~~~----------t~~~l~~~F~~~g-i~~v~i~~~~~~g~---------~~g~---afV~f~~~~~ 68 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNT----------VQGDIDAIFKDLS-IRSVRLVRDKDTDK---------FKGF---CYVEFDEVDS 68 (103)
T ss_dssp SSSCEEEEEESCCTTC----------CHHHHHHHTTTSC-EEEEEEEECSSSCS---------EEEE---EEEEESSHHH
T ss_pred CCCCeEEEEeCCCCCC----------CHHHHHHHHHhCC-ceEEEEeecCCCCc---------cceE---EEEEECCHHH
Confidence 4556799999999887 8999999999998 99999998754433 2366 9999999999
Q ss_pred HHHHHHHhcCccceecCceeEEEE
Q 019393 258 FYNTLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 258 F~kAM~aLrGmKL~~kGk~l~a~i 281 (341)
..+|| .|.|..+ .|+.+.+.+
T Consensus 69 a~~A~-~l~g~~~--~g~~l~V~~ 89 (103)
T 2dng_A 69 LKEAL-TYDGALL--GDRSLRVDI 89 (103)
T ss_dssp HHHHG-GGTTCEE--TTEECEEEE
T ss_pred HHHHH-hhCCCeE--CCeEEEEEE
Confidence 99999 9999888 787655443
No 113
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=98.71 E-value=3.7e-08 Score=80.29 Aligned_cols=75 Identities=17% Similarity=0.330 Sum_probs=63.5
Q ss_pred CeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHH
Q 019393 182 DTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNT 261 (341)
Q Consensus 182 DTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kA 261 (341)
-||+|.|||-.+ +++.|+.+|+.||+|..|.|+.+...++ ..|. |||+|....+..+|
T Consensus 3 ~~l~v~nlp~~~----------~~~~l~~~f~~~G~i~~v~~~~~~~~~~---------~~g~---afV~f~~~~~A~~a 60 (167)
T 1fxl_A 3 TNLIVNYLPQNM----------TQEEFRSLFGSIGEIESCKLVRDKITGQ---------SLGY---GFVNYIDPKDAEKA 60 (167)
T ss_dssp SEEEEESCCTTC----------CHHHHHHHHHTTSCEEEEEEEECTTTCC---------EEEE---EEEEESSHHHHHHH
T ss_pred ceEEEcCCCCCC----------CHHHHHHHHHhcCCeEEEEEEeCCCCCc---------ceeE---EEEEECCHHHHHHH
Confidence 389999999988 8999999999999999999987644433 2266 99999999999999
Q ss_pred HHHhcCccceecCceeEEE
Q 019393 262 LKVLCGRSMQKQGSQLKAD 280 (341)
Q Consensus 262 M~aLrGmKL~~kGk~l~a~ 280 (341)
|+.|.|..+ .|+.+.+.
T Consensus 61 ~~~l~~~~~--~g~~l~v~ 77 (167)
T 1fxl_A 61 INTLNGLRL--QTKTIKVS 77 (167)
T ss_dssp HHHHTTCEE--TTEECEEE
T ss_pred HHHcCCCcc--CCceEEEE
Confidence 999999888 67665543
No 114
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=3.5e-08 Score=76.47 Aligned_cols=75 Identities=8% Similarity=0.127 Sum_probs=62.1
Q ss_pred CCCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchH
Q 019393 178 KQEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRD 257 (341)
Q Consensus 178 geRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~ 257 (341)
.+..-||||.|||..+ +++.|+.+|+.||.|. ++|+.. . ..|+ |||+|....+
T Consensus 16 ~~~~~~l~V~nL~~~~----------t~~~l~~~F~~~G~v~-~~~~~~----~---------~~g~---afV~f~~~~~ 68 (97)
T 2e5j_A 16 APLAADVYVGNLPRDA----------RVSDLKRALRELGSVP-LRLTWQ----G---------PRRR---AFLHYPDSAA 68 (97)
T ss_dssp SCCCCEEEEECCCTTC----------CHHHHHHHHHHTTCCC-SEEEEE----T---------TTTE---EEEECSSHHH
T ss_pred CCCCCEEEEeCCCCcC----------cHHHHHHHHHhcCCEE-EEEEcC----C---------CCcE---EEEEECCHHH
Confidence 3456799999999888 8999999999999997 677642 1 2266 9999999999
Q ss_pred HHHHHHHhcCccceecCceeEEEE
Q 019393 258 FYNTLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 258 F~kAM~aLrGmKL~~kGk~l~a~i 281 (341)
..+|+++|.|..+ .|+.+.+.+
T Consensus 69 a~~A~~~l~g~~~--~g~~l~V~~ 90 (97)
T 2e5j_A 69 AQQAVSCLQGLRL--GTDTLRVAL 90 (97)
T ss_dssp HHHHHHHHTTCCS--SSSCCEEEE
T ss_pred HHHHHHHhCCCEE--CCcEEEEEE
Confidence 9999999999998 787755543
No 115
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=98.70 E-value=2.5e-08 Score=76.55 Aligned_cols=73 Identities=21% Similarity=0.307 Sum_probs=60.2
Q ss_pred CCeEEEcCCccccccCCCCCCCCcHHHHH----HHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccch
Q 019393 181 PDTIVIKGVPSRWFAEPRVSSKPSMLVTH----TVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYR 256 (341)
Q Consensus 181 PDTI~l~gLP~rWFa~~~~s~kPSE~vl~----~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~ 256 (341)
.-||||.|||..+ +++.|+ .+|++||.|..|.|+. .+ ...|+ |||+|....
T Consensus 8 ~~~l~V~nLp~~~----------~~~~l~~~l~~~f~~~G~i~~v~i~~---~~---------~~~g~---afV~f~~~~ 62 (97)
T 1nu4_A 8 NHTIYINNLNEKI----------KKDELKKSLHAIFSRFGQILDILVSR---SL---------KMRGQ---AFVIFKEVS 62 (97)
T ss_dssp CSEEEEESCCTTS----------CHHHHHHHHHHHHGGGSCEEEEECCH---HH---------HHTTC---EEEEESSHH
T ss_pred CCEEEEeCCCCCC----------CHHHHHHHHHHHHHhCCCEEEEEEEc---CC---------CcCcE---EEEEeCCHH
Confidence 3599999999887 777788 9999999999999972 11 12366 999999999
Q ss_pred HHHHHHHHhcCccceecCceeEEE
Q 019393 257 DFYNTLKVLCGRSMQKQGSQLKAD 280 (341)
Q Consensus 257 ~F~kAM~aLrGmKL~~kGk~l~a~ 280 (341)
+..+|+++|.|..+ .|+.+.+.
T Consensus 63 ~A~~A~~~l~g~~~--~g~~l~v~ 84 (97)
T 1nu4_A 63 SATNALRSMQGFPF--YDKPMRIQ 84 (97)
T ss_dssp HHHHHHHHHTTCEE--TTEECEEE
T ss_pred HHHHHHHHhCCCEE--CCcEEEEE
Confidence 99999999999888 78665443
No 116
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=98.69 E-value=4.8e-08 Score=80.12 Aligned_cols=78 Identities=18% Similarity=0.339 Sum_probs=65.8
Q ss_pred CCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHH
Q 019393 180 EPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFY 259 (341)
Q Consensus 180 RPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~ 259 (341)
...||+|.|||..+ +++.|+.+|++||.|..+.|+.+...+.. .|. |||+|....+..
T Consensus 88 ~~~~l~v~nl~~~~----------t~~~l~~~f~~~G~i~~~~i~~~~~~~~~---------~g~---afV~f~~~~~A~ 145 (168)
T 1b7f_A 88 KDTNLYVTNLPRTI----------TDDQLDTIFGKYGSIVQKNILRDKLTGRP---------RGV---AFVRYNKREEAQ 145 (168)
T ss_dssp TTCEEEEESCCTTC----------CHHHHHHHHTSSSCEEEEEEEECTTTCCE---------EEE---EEEEESSHHHHH
T ss_pred CCCCEEEeCCCCCC----------CHHHHHHhhhcCCcEEEEEEEEcCCCCCc---------ceE---EEEEECCHHHHH
Confidence 34699999999887 88999999999999999999987554432 255 999999999999
Q ss_pred HHHHHhcCccceecC--ceeEEEE
Q 019393 260 NTLKVLCGRSMQKQG--SQLKADY 281 (341)
Q Consensus 260 kAM~aLrGmKL~~kG--k~l~a~i 281 (341)
+|++.|.|..+ .| +.+.+.+
T Consensus 146 ~A~~~l~g~~~--~g~~~~l~V~~ 167 (168)
T 1b7f_A 146 EAISALNNVIP--EGGSQPLSVRL 167 (168)
T ss_dssp HHHHHHTTCCC--TTCSSCCEEEE
T ss_pred HHHHHhcCCEe--cCCCeEEEEEe
Confidence 99999999988 55 6666653
No 117
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.69 E-value=1.2e-08 Score=80.77 Aligned_cols=79 Identities=14% Similarity=0.272 Sum_probs=62.0
Q ss_pred CCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHH
Q 019393 179 QEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDF 258 (341)
Q Consensus 179 eRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F 258 (341)
...-||||.|||..+ +++.|+.+|++||.|..+.|+.....++ ..|+ |||+|....+.
T Consensus 23 ~~~~~l~V~nLp~~~----------t~~~l~~~f~~~G~v~~~~~~~~~~~g~---------~~g~---afV~f~~~~~a 80 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRV----------TERDLVSLFARFQEKKGPPIQFRMMTGR---------MRGQ---AFITFPNKEIA 80 (115)
T ss_dssp SCCSEEEEECCCTTC----------CHHHHHHHTHHHHHSSSSCCEEEEECSS---------SCSE---EEEECSSHHHH
T ss_pred CCCCEEEEeCCCCCC----------CHHHHHHHHHHhCCccceEEEEEcCCCc---------cceE---EEEEECCHHHH
Confidence 334699999999877 8999999999999996554444322222 2367 99999999999
Q ss_pred HHHHHHhcCccceecCceeEEEE
Q 019393 259 YNTLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 259 ~kAM~aLrGmKL~~kGk~l~a~i 281 (341)
.+||++|.|..+ .|+.+.+.+
T Consensus 81 ~~Ai~~l~g~~~--~g~~l~v~~ 101 (115)
T 2cpx_A 81 WQALHLVNGYKL--YGKILVIEF 101 (115)
T ss_dssp HHHHHHSTTCBC--SSCBCEEEE
T ss_pred HHHHHHhCCCEe--CCcEEEEEE
Confidence 999999999998 788765443
No 118
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=98.69 E-value=4.8e-08 Score=77.32 Aligned_cols=68 Identities=21% Similarity=0.336 Sum_probs=59.6
Q ss_pred CeEEEcCCccc-cccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHH
Q 019393 182 DTIVIKGVPSR-WFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYN 260 (341)
Q Consensus 182 DTI~l~gLP~r-WFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~k 260 (341)
-||||.|||.. + +++.|+.+|++||+|..|.|+ .|+ |||+|....+..+
T Consensus 28 ~~l~V~nl~~~~~----------t~~~l~~~F~~~G~v~~v~i~-----------------~g~---afV~f~~~~~A~~ 77 (110)
T 1wf1_A 28 SRVFIGNLNTALV----------KKSDVETIFSKYGRVAGCSVH-----------------KGY---AFVQYSNERHARA 77 (110)
T ss_dssp SEEEECSCCCSSC----------CHHHHHHHHGGGSCCSEEEEE-----------------TTE---EEEECSSSHHHHH
T ss_pred cEEEEeCCCcccC----------CHHHHHHHHHhCCCeEEEEEe-----------------CCE---EEEEECCHHHHHH
Confidence 49999999988 8 899999999999999999991 266 9999999999999
Q ss_pred HHHHhcCccceecCceeEEEE
Q 019393 261 TLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 261 AM~aLrGmKL~~kGk~l~a~i 281 (341)
||++|.|..+ .|+.+.+.+
T Consensus 78 A~~~l~g~~~--~g~~l~V~~ 96 (110)
T 1wf1_A 78 AVLGENGRVL--AGQTLDINM 96 (110)
T ss_dssp HHHHHTTCEE--TTEECCEEE
T ss_pred HHHHcCCCEE--CCeEEEEEE
Confidence 9999999988 787654443
No 119
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.68 E-value=2.8e-08 Score=82.98 Aligned_cols=79 Identities=11% Similarity=0.127 Sum_probs=64.8
Q ss_pred CeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHH
Q 019393 182 DTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNT 261 (341)
Q Consensus 182 DTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kA 261 (341)
-||||.|||... +|+.|+.+|++||+|.+|.|+.+ .|+ |||+|+.-.+..+|
T Consensus 32 ~~LfVgNLp~~v----------te~dL~~lF~~fG~V~~v~i~~~---------------kG~---AFVeF~~~e~A~~A 83 (119)
T 2ad9_A 32 RVIHIRKLPIDV----------TEGEVISLGLPFGKVTNLLMLKG---------------KNQ---AFIEMNTEEAANTM 83 (119)
T ss_dssp SEEEEESCCTTC----------CHHHHHHHHTTTSCCCEEEEEGG---------------GTE---EEEECSCHHHHHHH
T ss_pred CEEEEeCCCCCC----------CHHHHHHHHHhcCCEEEEEEeCC---------------CCE---EEEEECCHHHHHHH
Confidence 489999999876 89999999999999999999853 166 99999999999999
Q ss_pred HHHhcCccceecCceeEEEEEEeecccCCCc
Q 019393 262 LKVLCGRSMQKQGSQLKADYEVTWDKDGFFW 292 (341)
Q Consensus 262 M~aLrGmKL~~kGk~l~a~ikV~fD~tkhlS 292 (341)
++.|.|......|+.+ +|.|-+.+-+.
T Consensus 84 i~~l~~~~~~l~Gr~l----~V~~a~~k~~~ 110 (119)
T 2ad9_A 84 VNYYTSVTPVLRGQPI----YIQFSNHKELK 110 (119)
T ss_dssp HHHHHHHCCCBTTBCC----EEEECSSSSCC
T ss_pred HHHhccCCceECCeEE----EEEEccCCCCC
Confidence 9999876554588865 45555555544
No 120
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=98.68 E-value=3.8e-08 Score=84.36 Aligned_cols=86 Identities=15% Similarity=0.202 Sum_probs=70.0
Q ss_pred CCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccC--ceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchH
Q 019393 180 EPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFG--KIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRD 257 (341)
Q Consensus 180 RPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FG--kIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~ 257 (341)
..-||||.|||..+ +++.|+.+|++|| +|..|.|+.+...++. .|+ |||+|....+
T Consensus 54 ~~~~lfVgnLp~~~----------te~~L~~~F~~~G~i~v~~v~i~~d~~tg~s---------kGf---aFV~f~~~~~ 111 (156)
T 3n9u_C 54 RRAAVYVGSFSWWT----------TDQQLIQVIRSIGVYDVVELKFAENRANGQS---------KGY---AEVVVASENS 111 (156)
T ss_dssp --CEEEEECCCTTC----------CHHHHHHHHHHTTCCCEEEEEEEECTTTCCE---------EEE---EEEEESCHHH
T ss_pred CCCEEEEeCCCCCC----------CHHHHHHHHHHHCCccEEEEEEEecCCCCcc---------ceE---EEEEECCHHH
Confidence 45699999999877 8999999999999 9999999987555442 377 9999999999
Q ss_pred HHHHHHHhcCccceecCceeEEEEEEeecccCCCcc
Q 019393 258 FYNTLKVLCGRSMQKQGSQLKADYEVTWDKDGFFWD 293 (341)
Q Consensus 258 F~kAM~aLrGmKL~~kGk~l~a~ikV~fD~tkhlS~ 293 (341)
..+||+.|.|..| .|+.+ +|.|-+.+.++.
T Consensus 112 A~~Ai~~lng~~~--~Gr~l----~V~~a~~~~~~~ 141 (156)
T 3n9u_C 112 VHKLLELLPGKVL--NGEKV----DVRPATRQNLSQ 141 (156)
T ss_dssp HHHHHHHSTTCEE--TTEEC----EEEECCHHHHHH
T ss_pred HHHHHHHcCCCEE--CCeEe----EEEEcCCCcchh
Confidence 9999999999988 78765 555665554443
No 121
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.67 E-value=7.8e-08 Score=74.90 Aligned_cols=81 Identities=20% Similarity=0.346 Sum_probs=63.2
Q ss_pred CCCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchH
Q 019393 178 KQEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRD 257 (341)
Q Consensus 178 geRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~ 257 (341)
.+.+-||||.|||..+ +++.|+.+|+.||+|..|.|+.+...++ ..|+ |||+|....+
T Consensus 12 ~~~~~~l~v~nlp~~~----------t~~~l~~~F~~~G~i~~v~i~~~~~~g~---------~~g~---afV~f~~~~~ 69 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKT----------TEQDLKEYFSTFGEVLMVQVKKDLKTGH---------SKGF---GFVRFTEYET 69 (103)
T ss_dssp CCCCCCEEEESCCSSC----------CHHHHHHHHGGGSCEEEEEEEECSSSCS---------EEEE---EEEEESSHHH
T ss_pred cCCCCEEEEEcCCCcC----------CHHHHHHHHHhcCCeEEEEEEecCCCCC---------ccce---EEEEECCHHH
Confidence 4556799999999888 8999999999999999999998754433 2367 9999999999
Q ss_pred HHHHHHHhcCccceecCceeEEEEEEeeccc
Q 019393 258 FYNTLKVLCGRSMQKQGSQLKADYEVTWDKD 288 (341)
Q Consensus 258 F~kAM~aLrGmKL~~kGk~l~a~ikV~fD~t 288 (341)
..+||+. |..+ .|+.+ +|.|-+.
T Consensus 70 a~~A~~~--~~~~--~g~~l----~v~~a~~ 92 (103)
T 2cqg_A 70 QVKVMSQ--RHMI--DGRWC----DCKLPNS 92 (103)
T ss_dssp HHHHHHS--CEEE--TTEEE----EEECCCT
T ss_pred HHHHHHc--CCee--CCeEE----EEEecCC
Confidence 9999994 4433 67654 4555443
No 122
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.67 E-value=6e-08 Score=75.30 Aligned_cols=79 Identities=19% Similarity=0.304 Sum_probs=62.5
Q ss_pred CCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHH
Q 019393 179 QEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDF 258 (341)
Q Consensus 179 eRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F 258 (341)
...-||||.|||..+ +++.|+.+|++||.| .|+.+ ..++ ..|+ |||+|....+.
T Consensus 13 ~~~~~l~V~nLp~~~----------t~~~l~~~F~~~g~v---~~~~~-~~g~---------~~g~---afV~f~~~~~A 66 (101)
T 2fc9_A 13 GESKTLVLSNLSYSA----------TEETLQEVFEKATFI---KVPQN-QNGK---------SKGY---AFIEFASFEDA 66 (101)
T ss_dssp CCCSEEEEESCCTTC----------CHHHHHHHCSSCSEE---ECCBC-SSSC---------BCSE---EEEECSSHHHH
T ss_pred CCCCEEEEeCCCCCC----------CHHHHHHHHHhCCEE---EEEEC-CCCC---------EeeE---EEEEECCHHHH
Confidence 345699999999998 899999999999988 45444 3332 2367 99999999999
Q ss_pred HHHHHHhcCccceecCceeEEEEEEeecccC
Q 019393 259 YNTLKVLCGRSMQKQGSQLKADYEVTWDKDG 289 (341)
Q Consensus 259 ~kAM~aLrGmKL~~kGk~l~a~ikV~fD~tk 289 (341)
.+||+.|.|..+ .|+. |+|.|.+.+
T Consensus 67 ~~A~~~l~g~~~--~g~~----l~v~~a~~~ 91 (101)
T 2fc9_A 67 KEALNSCNKREI--EGRA----IRLELQGPR 91 (101)
T ss_dssp HHHHHHTSSEEE--TTEE----EEEEECSSC
T ss_pred HHHHHHhCCCEe--CCeE----EEEEEcCCC
Confidence 999999999888 6765 556666544
No 123
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=98.67 E-value=5.2e-08 Score=79.91 Aligned_cols=75 Identities=21% Similarity=0.340 Sum_probs=63.8
Q ss_pred CeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHH
Q 019393 182 DTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNT 261 (341)
Q Consensus 182 DTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kA 261 (341)
-||+|.|||..+ +++.|+.+|+.||.|..|.|+.+...+. ..|. |||+|....+..+|
T Consensus 4 ~~l~v~nlp~~~----------~~~~l~~~f~~~G~i~~v~i~~~~~~~~---------~~g~---afV~f~~~~~A~~a 61 (168)
T 1b7f_A 4 TNLIVNYLPQDM----------TDRELYALFRAIGPINTCRIMRDYKTGY---------SYGY---AFVDFTSEMDSQRA 61 (168)
T ss_dssp SEEEEECCCTTC----------CHHHHHHHHHTTSCEEEEECCEETTTTE---------ECSE---EEEEESSHHHHHHH
T ss_pred cEEEEeCCCCCC----------CHHHHHHHHHhcCCeeEEEEEEeCCCCc---------cceE---EEEEECCHHHHHHH
Confidence 489999999988 8999999999999999999987543333 2367 99999999999999
Q ss_pred HHHhcCccceecCceeEEE
Q 019393 262 LKVLCGRSMQKQGSQLKAD 280 (341)
Q Consensus 262 M~aLrGmKL~~kGk~l~a~ 280 (341)
|+.|.|..+ .|+.+.+.
T Consensus 62 ~~~l~~~~~--~g~~l~v~ 78 (168)
T 1b7f_A 62 IKVLNGITV--RNKRLKVS 78 (168)
T ss_dssp HHHHTTCEE--TTEECEEE
T ss_pred HHhcCCCEe--CCcEEEEE
Confidence 999999988 77765544
No 124
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=98.66 E-value=6.6e-08 Score=78.77 Aligned_cols=73 Identities=21% Similarity=0.375 Sum_probs=62.6
Q ss_pred CCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHH
Q 019393 180 EPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFY 259 (341)
Q Consensus 180 RPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~ 259 (341)
..-+|+|.|||..+ +++.|+.+|++||.|..+.|+.+...+. ..|. |||+|....+..
T Consensus 87 ~~~~l~v~nl~~~~----------t~~~l~~~f~~~G~i~~~~i~~~~~~g~---------~~g~---afV~f~~~~~A~ 144 (167)
T 1fxl_A 87 RDANLYVSGLPKTM----------TQKELEQLFSQYGRIITSRILVDQVTGV---------SRGV---GFIRFDKRIEAE 144 (167)
T ss_dssp TTCEEEEESCCTTC----------CHHHHHHHHGGGSCEEEEEEEECTTTCC---------EEEE---EEEEESSHHHHH
T ss_pred CCCcEEECCCCCcC----------CHHHHHHHHHhcCCEeEEEEEecCCCCC---------ccce---EEEEeCCHHHHH
Confidence 34589999999887 8899999999999999999998754433 2256 999999999999
Q ss_pred HHHHHhcCccceecCce
Q 019393 260 NTLKVLCGRSMQKQGSQ 276 (341)
Q Consensus 260 kAM~aLrGmKL~~kGk~ 276 (341)
+|++.|.|+.+ .|+.
T Consensus 145 ~A~~~l~g~~~--~g~~ 159 (167)
T 1fxl_A 145 EAIKGLNGQKP--SGAT 159 (167)
T ss_dssp HHHHHHTTCCC--TTCS
T ss_pred HHHHHhcCCcc--CCCc
Confidence 99999999988 7765
No 125
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=98.66 E-value=5.8e-08 Score=80.80 Aligned_cols=75 Identities=20% Similarity=0.355 Sum_probs=64.2
Q ss_pred CCCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchH
Q 019393 178 KQEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRD 257 (341)
Q Consensus 178 geRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~ 257 (341)
...+-||||.|||..+ +++.|+.+|++||.|..|.|+.+ + .|+ |||+|....+
T Consensus 70 ~~~~~~l~V~nl~~~~----------t~~~l~~~F~~~G~i~~v~i~~~-~-------------~g~---afV~f~~~~~ 122 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNG----------NKTELERAFGYYGPLRSVWVARN-P-------------PGF---AFVEFEDPRD 122 (150)
T ss_dssp STTSCEEEEESCCSCC----------SCHHHHHHHHHHSCEEEEEECSS-S-------------CSE---EEEEESSHHH
T ss_pred CCCCCEEEEeCCCCCC----------CHHHHHHHHHhhCCEEEEEEeeC-C-------------CcE---EEEEECCHHH
Confidence 3455799999999877 78889999999999999999875 1 266 9999999999
Q ss_pred HHHHHHHhcCccceecCceeEEEE
Q 019393 258 FYNTLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 258 F~kAM~aLrGmKL~~kGk~l~a~i 281 (341)
..+||++|.|..+ .|+.+.+.+
T Consensus 123 a~~A~~~l~g~~~--~g~~l~v~~ 144 (150)
T 2i2y_A 123 AADAVRELDGRTL--CGCRVRVEL 144 (150)
T ss_dssp HHHHHHHHSSSCS--SSSCCEEEE
T ss_pred HHHHHHHcCCCEE--CCeEEEEEE
Confidence 9999999999988 787765543
No 126
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=98.66 E-value=5.3e-08 Score=79.27 Aligned_cols=74 Identities=16% Similarity=0.285 Sum_probs=62.7
Q ss_pred eEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHH
Q 019393 183 TIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTL 262 (341)
Q Consensus 183 TI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM 262 (341)
||+|.|||..+ +++.|+.+|++||+|.+|.|+.+. .++ ..|. |||+|....+..+||
T Consensus 2 ~l~V~nlp~~~----------t~~~l~~~f~~~G~i~~v~i~~~~-~~~---------~~g~---afV~f~~~~~a~~A~ 58 (166)
T 3md3_A 2 VLYVGNLDKAI----------TEDILKQYFQVGGPIANIKIMIDK-NNK---------NVNY---AFVEYHQSHDANIAL 58 (166)
T ss_dssp EEEEEEEETTC----------CHHHHHHHHGGGSCEEEEEEECCC-C-C---------CEEE---EEEEESSHHHHHHHH
T ss_pred EEEECCCCCcC----------CHHHHHHHHHhcCCeEEEEEEECC-CCC---------CCCE---EEEEeCCHHHHHHHH
Confidence 89999999888 899999999999999999998763 222 2366 999999999999999
Q ss_pred HHhcCccceecCceeEEEE
Q 019393 263 KVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 263 ~aLrGmKL~~kGk~l~a~i 281 (341)
+.|.|..+ .|+.+.+..
T Consensus 59 ~~l~~~~~--~g~~i~v~~ 75 (166)
T 3md3_A 59 QTLNGKQI--ENNIVKINW 75 (166)
T ss_dssp HHHTTCEE--TTEECEEEE
T ss_pred HHcCCCcc--CCCeeEEEE
Confidence 99999998 677665543
No 127
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=98.66 E-value=5.9e-08 Score=82.89 Aligned_cols=77 Identities=23% Similarity=0.332 Sum_probs=65.4
Q ss_pred CCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHH
Q 019393 180 EPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFY 259 (341)
Q Consensus 180 RPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~ 259 (341)
..-||+|.|||..+ +++.|+.+|++||.|..|.|+.+...++ ..|. |||+|....+..
T Consensus 124 ~~~~l~v~nlp~~~----------t~~~l~~~f~~~G~v~~v~i~~~~~~g~---------~~g~---afV~F~~~~~A~ 181 (216)
T 2qfj_A 124 AFNRIYVASVHQDL----------SDDDIKSVFEAFGKIKSATLARDPTTGK---------HKGY---GFIEYEKAQSSQ 181 (216)
T ss_dssp TSCEEEEECCCTTC----------CHHHHHHHHTTSSCEEEEEEEECTTTCC---------EEEE---EEEEESSHHHHH
T ss_pred CCcEEEEeCCCCcC----------CHHHHHHHHhccCCeeEEEEEecCCCCC---------cCce---EEEEecCHHHHH
Confidence 44699999999887 8999999999999999999998754433 2255 999999999999
Q ss_pred HHHHHhcCccceecCceeEEE
Q 019393 260 NTLKVLCGRSMQKQGSQLKAD 280 (341)
Q Consensus 260 kAM~aLrGmKL~~kGk~l~a~ 280 (341)
+|+++|.|..+ .|+.+.+.
T Consensus 182 ~A~~~l~g~~~--~g~~i~V~ 200 (216)
T 2qfj_A 182 DAVSSMNLFDL--GGQYLRVG 200 (216)
T ss_dssp HHHHHHTTCBC--SSSBCEEE
T ss_pred HHHHHccCCEe--CCcEEEEE
Confidence 99999999988 88776554
No 128
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.65 E-value=1.9e-08 Score=81.55 Aligned_cols=78 Identities=15% Similarity=0.147 Sum_probs=65.3
Q ss_pred CCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHH
Q 019393 179 QEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDF 258 (341)
Q Consensus 179 eRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F 258 (341)
..+-||||.|||..+ +++.|+.+|+.||.|..+.++.+++.++. .|+ |||+|....+.
T Consensus 23 ~~~~~l~V~nLp~~~----------te~~l~~~F~~~G~v~~~~~~~~~~~g~~---------~G~---afV~F~~~~~a 80 (124)
T 1wel_A 23 EAGFCVYLKGLPFEA----------ENKHVIDFFKKLDIVEDSIYIAYGPNGKA---------TGE---GFVEFRNEADY 80 (124)
T ss_dssp CCCCEEEEECCCTTC----------CHHHHHHHSCSSCBCTTTCEEEECTTSSE---------EEE---EEEEBSSSHHH
T ss_pred CCCcEEEEeCCCCCC----------CHHHHHHHHHhcCCccceEEEEECCCCCC---------CeE---EEEEECCHHHH
Confidence 344699999999887 89999999999999998777776665443 377 99999999999
Q ss_pred HHHHHHhcCccceecCceeEEEE
Q 019393 259 YNTLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 259 ~kAM~aLrGmKL~~kGk~l~a~i 281 (341)
.+||+ |.|..| .|+.+.+++
T Consensus 81 ~~Al~-~~g~~~--~gr~i~V~~ 100 (124)
T 1wel_A 81 KAALC-RHKQYM--GNRFIQVHP 100 (124)
T ss_dssp HHHHT-SCSBCS--TTSCBEEEE
T ss_pred HHHHH-hCCCeE--CCcEEEEEE
Confidence 99999 999888 888765544
No 129
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=98.65 E-value=9.1e-08 Score=81.73 Aligned_cols=73 Identities=16% Similarity=0.269 Sum_probs=61.9
Q ss_pred eEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHH
Q 019393 183 TIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTL 262 (341)
Q Consensus 183 TI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM 262 (341)
||||.|||..+ +++-|+.+|++||+|..|.|+.+...++. .|+ |||+|....+..+||
T Consensus 30 ~l~V~nLp~~~----------t~~~l~~~f~~~G~i~~v~i~~~~~~g~~---------~g~---afV~f~~~~~A~~A~ 87 (216)
T 2qfj_A 30 RVYVGSIYYEL----------GEDTIRQAFAPFGPIKSIDMSWDSVTMKH---------KGF---AFVEYEVPEAAQLAL 87 (216)
T ss_dssp EEEEECCCTTC----------CHHHHHHHHGGGSCEEEEEECCC-CC-CC---------CSE---EEEEESSHHHHHHHH
T ss_pred EEEEECCCCCC----------CHHHHHHHHHhCCCEEEEEEeecCCCCcc---------Cce---EEEEeCCHHHHHHHH
Confidence 89999999998 89999999999999999999876444332 377 999999999999999
Q ss_pred HHhcCccceecCceeEE
Q 019393 263 KVLCGRSMQKQGSQLKA 279 (341)
Q Consensus 263 ~aLrGmKL~~kGk~l~a 279 (341)
+.|.|..+ .|+.+.+
T Consensus 88 ~~l~~~~~--~g~~l~v 102 (216)
T 2qfj_A 88 EQMNSVML--GGRNIKV 102 (216)
T ss_dssp HHHSSCCC--C-CCCEE
T ss_pred HHccCCee--CCeeEEE
Confidence 99999988 7877655
No 130
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=98.64 E-value=8e-08 Score=83.74 Aligned_cols=79 Identities=19% Similarity=0.333 Sum_probs=67.1
Q ss_pred CCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHH
Q 019393 179 QEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDF 258 (341)
Q Consensus 179 eRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F 258 (341)
...-||||.|||..+ +++.|+.+|+.||+|..|.|+.+. .+.. .|+ |||+|....+.
T Consensus 86 ~~~~~l~V~nLp~~~----------te~~L~~~F~~~G~I~~v~i~~d~-~g~~---------kG~---afV~F~~~~~A 142 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGV----------SDADIQELFAEFGTLKKAAVDYDR-SGRS---------LGT---ADVHFERRADA 142 (177)
T ss_dssp TTCEEEEEECCCSCC----------CHHHHHHHHHHTSCCSEEEECCCT-TSSC---------SCC---EEEEESCHHHH
T ss_pred CCCCEEEEeCCCCCC----------CHHHHHHHHHhcCCeEEEEEEECC-CCCE---------eeE---EEEEeCCHHHH
Confidence 334599999999887 899999999999999999998774 4332 267 99999999999
Q ss_pred HHHHHHhcCccceecCceeEEEEE
Q 019393 259 YNTLKVLCGRSMQKQGSQLKADYE 282 (341)
Q Consensus 259 ~kAM~aLrGmKL~~kGk~l~a~ik 282 (341)
.+|++.|.|..| +|+.+.+.+-
T Consensus 143 ~~Ai~~lng~~l--~Gr~l~V~~a 164 (177)
T 2f3j_A 143 LKAMKQYKGVPL--DGRPMDIQLV 164 (177)
T ss_dssp HHHHHHSTTCBC--SSSBCEEEEE
T ss_pred HHHHHHhCCCEE--CCEEEEEEEe
Confidence 999999999988 8887776653
No 131
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.64 E-value=8.5e-08 Score=74.36 Aligned_cols=75 Identities=20% Similarity=0.293 Sum_probs=63.2
Q ss_pred CCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhcc--CceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccch
Q 019393 179 QEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTF--GKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYR 256 (341)
Q Consensus 179 eRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~F--GkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~ 256 (341)
...-||||.|||..+ +++.|+.+|++| |.|..|.|+ .|+ |||+|....
T Consensus 13 ~~~~~l~V~nLp~~~----------t~~~l~~~F~~~g~g~v~~~~~~-----------------~g~---afV~f~~~~ 62 (99)
T 2cpd_A 13 SSVKILYVRNLMLST----------SEEMIEKEFNNIKPGAVERVKKI-----------------RDY---AFVHFSNRE 62 (99)
T ss_dssp SCCCEEEEESCCTTC----------CHHHHHHHHHTTSTTCEEEEEEC-----------------SSE---EEEEESSHH
T ss_pred CCcCEEEEeCCCCCC----------CHHHHHHHHHhcCCcceEEEEEe-----------------CCe---EEEEeCCHH
Confidence 344699999999887 899999999999 999999876 145 999999999
Q ss_pred HHHHHHHHhcCccceecCceeEEEEEEeecccC
Q 019393 257 DFYNTLKVLCGRSMQKQGSQLKADYEVTWDKDG 289 (341)
Q Consensus 257 ~F~kAM~aLrGmKL~~kGk~l~a~ikV~fD~tk 289 (341)
+..+||+.|.|..+ .|+. |+|.|-+.+
T Consensus 63 ~A~~A~~~l~g~~~--~g~~----l~v~~a~~~ 89 (99)
T 2cpd_A 63 DAVEAMKALNGKVL--DGSP----IEVTLAKPV 89 (99)
T ss_dssp HHHHHHHHHSSEEE--TTEE----EEEECCCCC
T ss_pred HHHHHHHHhCCCEe--CCcE----EEEEECCCC
Confidence 99999999999988 6764 566666543
No 132
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=98.64 E-value=6.9e-08 Score=84.51 Aligned_cols=75 Identities=16% Similarity=0.192 Sum_probs=63.7
Q ss_pred CeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHH
Q 019393 182 DTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNT 261 (341)
Q Consensus 182 DTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kA 261 (341)
-||||.|||..+ +|+.|+.+|++||+|.+|.|+.+...++ ..|. |||+|....+..+|
T Consensus 16 ~tlfVgnLp~~~----------te~~L~~~F~~~G~I~~v~i~~d~~tg~---------~~G~---afV~F~~~~~A~~A 73 (213)
T 4f02_A 16 ASLYVGDLHPDV----------TEAMLYEKFSPAGPILSIRVCRDMITRR---------SLGY---AYVNFQQPADAERA 73 (213)
T ss_dssp CEEEEESCCTTC----------CHHHHHHHHGGGSCEEEEEEEECTTTCC---------EEEE---EEEEESSHHHHHHH
T ss_pred cEEEEeCCCCCC----------CHHHHHHHHHhhCCEEEEEEecccCCCC---------cccc---ccceeCCHHHHHHH
Confidence 489999999988 8999999999999999999987644433 2366 99999999999999
Q ss_pred HHHhcCccceecCceeEEE
Q 019393 262 LKVLCGRSMQKQGSQLKAD 280 (341)
Q Consensus 262 M~aLrGmKL~~kGk~l~a~ 280 (341)
|+.|.|..+ .|+.+.+.
T Consensus 74 i~~~~~~~~--~g~~i~~~ 90 (213)
T 4f02_A 74 LDTMNFDVI--KGKPVRIM 90 (213)
T ss_dssp HHHHTTCEE--TTEECEEE
T ss_pred HHHhhhhhc--CCcccccc
Confidence 999999877 67665543
No 133
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.63 E-value=3.5e-08 Score=81.58 Aligned_cols=73 Identities=18% Similarity=0.258 Sum_probs=62.5
Q ss_pred CeEEEcCCccc-cccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHH
Q 019393 182 DTIVIKGVPSR-WFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYN 260 (341)
Q Consensus 182 DTI~l~gLP~r-WFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~k 260 (341)
-+|||.|||.. . +|+-|+.+|++||+|.+|.|+.. .|+ |||+|++-.+..+
T Consensus 26 ~~l~V~NLp~~~~----------te~~L~~lF~~fG~V~~v~i~~~---------------kg~---aFVef~~~~~A~~ 77 (112)
T 1x4f_A 26 RVIHLSNLPHSGY----------SDSAVLKLAEPYGKIKNYILMRM---------------KSQ---AFIEMETREDAMA 77 (112)
T ss_dssp CEEEEESCCCSSC----------CSHHHHTTTTTTSCCSEEEEETT---------------TTE---EEEECSSHHHHHH
T ss_pred CEEEEeCCCCccC----------CHHHHHHHHHhcCCEEEEEEecC---------------CCE---EEEEECCHHHHHH
Confidence 38999999985 5 78889999999999999999621 266 9999999999999
Q ss_pred HHHHhcCccceecCceeEEEEE
Q 019393 261 TLKVLCGRSMQKQGSQLKADYE 282 (341)
Q Consensus 261 AM~aLrGmKL~~kGk~l~a~ik 282 (341)
||+.|.|..+...|+.+.|++-
T Consensus 78 Ai~~l~~~~~~l~Gr~l~V~~a 99 (112)
T 1x4f_A 78 MVDHCLKKALWFQGRCVKVDLS 99 (112)
T ss_dssp HHHHHHHSCCCSSSSCCEEEEE
T ss_pred HHHHhccCCceECCEEEEEEEC
Confidence 9999988776668998877763
No 134
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=98.63 E-value=9.1e-08 Score=78.71 Aligned_cols=78 Identities=15% Similarity=0.240 Sum_probs=64.4
Q ss_pred CCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHH
Q 019393 181 PDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYN 260 (341)
Q Consensus 181 PDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~k 260 (341)
.-+|+|.|||-.+ +++.|+.+|++||.|..|.|+.+ +.++ ..|+ |||+|....+..+
T Consensus 95 ~~~l~v~nl~~~~----------t~~~l~~~F~~~G~i~~v~~~~~-~~g~---------~~g~---afV~f~~~~~A~~ 151 (175)
T 3nmr_A 95 DRKLFIGMISKKC----------TENDIRVMFSSFGQIEECRILRG-PDGL---------SRGC---AFVTFTTRAMAQT 151 (175)
T ss_dssp GSEEEEESCCTTC----------CHHHHHHHHGGGSCEEEEEEEEC-TTSC---------EEEE---EEEEESSHHHHHH
T ss_pred CCeEEEcCCCCcC----------CHHHHHHHHHhCCCEEEEEEEEC-CCCC---------EEEE---EEEEECCHHHHHH
Confidence 4589999999887 88999999999999999999876 2232 2366 9999999999999
Q ss_pred HHHHhcCccceec-CceeEEEE
Q 019393 261 TLKVLCGRSMQKQ-GSQLKADY 281 (341)
Q Consensus 261 AM~aLrGmKL~~k-Gk~l~a~i 281 (341)
||++|.|..+... |+.+.+.+
T Consensus 152 A~~~l~g~~~~~g~~~~l~V~~ 173 (175)
T 3nmr_A 152 AIKAMHQAQTMEGCSSPMVVKF 173 (175)
T ss_dssp HHHHHTTSCCCTTCSSCCEEEE
T ss_pred HHHHhcCCcccCCCCCCeEEEe
Confidence 9999999988543 46666543
No 135
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.62 E-value=9.8e-08 Score=75.30 Aligned_cols=77 Identities=18% Similarity=0.184 Sum_probs=64.4
Q ss_pred CCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceee-eeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchH
Q 019393 179 QEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRN-LNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRD 257 (341)
Q Consensus 179 eRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRn-vDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~ 257 (341)
...-+|+|.|||..+ +++-|+..|+.||.|.+ |.|+.+ +.++.. |+ |||+|....+
T Consensus 13 ~~~~~l~V~nLp~~~----------te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~---------G~---afV~F~~~~~ 69 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGC----------SKEEIVQFFSGLEIVPNGMTLPVD-FQGRST---------GE---AFVQFASQEI 69 (104)
T ss_dssp SCCCEEEEESCCTTC----------CHHHHHHHTTTCCEEEEEEECCBC-SSSCBC---------SE---EEEEESSHHH
T ss_pred CCCCEEEEeCCCCCC----------CHHHHHHHHHhcCCcceeEEEEEC-CCCCcc---------eE---EEEEECCHHH
Confidence 455799999999888 89999999999999997 889887 555433 77 9999999999
Q ss_pred HHHHHHHhcCccceecCceeEEEE
Q 019393 258 FYNTLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 258 F~kAM~aLrGmKL~~kGk~l~a~i 281 (341)
..+||+. .|..| .|+.+.+..
T Consensus 70 a~~A~~~-~~~~~--~gr~i~v~~ 90 (104)
T 1wg5_A 70 AEKALKK-HKERI--GHRYIEIFK 90 (104)
T ss_dssp HHHHHTT-TTCCS--SSSCCEEEE
T ss_pred HHHHHHh-Ccchh--CCcEEEEEE
Confidence 9999998 88777 788655443
No 136
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=98.62 E-value=6.7e-08 Score=75.16 Aligned_cols=76 Identities=20% Similarity=0.375 Sum_probs=60.9
Q ss_pred CCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHH
Q 019393 179 QEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDF 258 (341)
Q Consensus 179 eRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F 258 (341)
..+-||||.|||..+ +++.|+.+|+.||.|..|.|+.+. .++ ..|+ |||+|....+.
T Consensus 7 ~~~~~l~V~nLp~~~----------t~~~l~~~F~~~G~i~~v~i~~~~-~g~---------~~g~---afV~f~~~~~a 63 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRM----------DETEIRSFFARYGSVKEVKIITDR-TGV---------SKGY---GFVSFYNDVDV 63 (102)
T ss_dssp EEEEEEEEECCCTTC----------CHHHHHHHHGGGSCEEEEEEEECT-TSC---------EEEE---EEEEESSCCCH
T ss_pred CCCCEEEEeCCCCCC----------CHHHHHHHHHhCCCeEEEEEEECC-CCC---------ccce---EEEEECCHHHH
Confidence 345699999999888 899999999999999999999874 433 2367 99999999999
Q ss_pred HHHHHHhcCccceecCceeEEEE
Q 019393 259 YNTLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 259 ~kAM~aLrGmKL~~kGk~l~a~i 281 (341)
.+||+ .|..| .|+.+.+..
T Consensus 64 ~~Ai~--~~~~~--~g~~l~v~~ 82 (102)
T 2xs2_A 64 QKIVE--SQINF--HGKKLKLGP 82 (102)
T ss_dssp HHHTT--CCCEE--TTEECEEEE
T ss_pred HHHHh--CCCeE--CCEEEEEEE
Confidence 99999 55444 565555443
No 137
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.61 E-value=7e-08 Score=77.31 Aligned_cols=77 Identities=14% Similarity=0.184 Sum_probs=64.0
Q ss_pred CCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCce-eeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchH
Q 019393 179 QEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKI-RNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRD 257 (341)
Q Consensus 179 eRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkI-RnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~ 257 (341)
...-||||.|||..+ +++.|+.+|+.||.| ..|.|+.+. .++. .|+ |||+|....+
T Consensus 13 ~~~~~l~V~nLp~~~----------t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~---------~G~---afV~F~~~~~ 69 (114)
T 2cpy_A 13 SAKVCAHITNIPFSI----------TKMDVLQFLEGIPVDENAVHVLVDN-NGQG---------LGQ---ALVQFKNEDD 69 (114)
T ss_dssp SCCCEEEEESCCTTS----------CHHHHHHHTTTSCCCSTTEEECCCT-TSSC---------SSC---EEEECSSHHH
T ss_pred CCccEEEEeCcCCcC----------CHHHHHHHHHhCCCcCCeEEEEECC-CCCc---------ceE---EEEEECCHHH
Confidence 334699999999988 899999999999999 999998875 4443 277 9999999999
Q ss_pred HHHHHHHhcCccceecCceeEEEE
Q 019393 258 FYNTLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 258 F~kAM~aLrGmKL~~kGk~l~a~i 281 (341)
..+||+. .|..| .|+.+.+.+
T Consensus 70 a~~Al~~-~~~~~--~gr~i~v~~ 90 (114)
T 2cpy_A 70 ARKSERL-HRKKL--NGREAFVHV 90 (114)
T ss_dssp HHHHGGG-CSEEE--TTEEEEEEE
T ss_pred HHHHHHh-CCCcc--CCeEEEEEE
Confidence 9999998 88777 787665543
No 138
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=98.61 E-value=7.3e-08 Score=79.15 Aligned_cols=75 Identities=15% Similarity=0.218 Sum_probs=62.8
Q ss_pred CCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHH
Q 019393 181 PDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYN 260 (341)
Q Consensus 181 PDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~k 260 (341)
..+|+|.|||..| +++.|+.+|++||.|..|.|+.+...+.. .|. |||+|....+..+
T Consensus 87 ~~~l~V~nlp~~~----------t~~~l~~~F~~~G~i~~~~i~~~~~~g~~---------~g~---afV~f~~~~~a~~ 144 (167)
T 2cjk_A 87 TGKIFVGGIGPDV----------RPKEFEEFFSQWGTIIDAQLMLDKDTGQS---------RGF---GFVTYDSADAVDR 144 (167)
T ss_dssp CEEEEEEEECTTC----------CHHHHHHHHHTTSCCSEEECCCSSSSSTT---------SEE---EEEEESSHHHHHH
T ss_pred CCeEEECCCCCCC----------CHHHHHHHHHhCccEEEEEEEEcCCCCcc---------ceE---EEEEECCHHHHHH
Confidence 3489999999988 88999999999999999999887544432 366 9999999999999
Q ss_pred HHHHhcCccceecCceeEEE
Q 019393 261 TLKVLCGRSMQKQGSQLKAD 280 (341)
Q Consensus 261 AM~aLrGmKL~~kGk~l~a~ 280 (341)
|++ +.|..+ .|+.+.+.
T Consensus 145 A~~-~~~~~~--~g~~i~V~ 161 (167)
T 2cjk_A 145 VCQ-NKFIDF--KDRKIEIK 161 (167)
T ss_dssp HHH-CSEECS--SSSCEEEE
T ss_pred HHh-CCCEEe--CCeEEEEe
Confidence 998 788777 78765543
No 139
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.61 E-value=1.1e-07 Score=72.44 Aligned_cols=77 Identities=17% Similarity=0.245 Sum_probs=64.5
Q ss_pred CCCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchH
Q 019393 178 KQEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRD 257 (341)
Q Consensus 178 geRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~ 257 (341)
...+-||+|.|||..+ +++.|+.+|+.| .|..|.|+.+ +.++ ..|. |||+|....+
T Consensus 7 ~~~~~~l~v~nLp~~~----------t~~~l~~~F~~~-~i~~v~i~~~-~~g~---------~~g~---afV~f~~~~~ 62 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNV----------TEKNVMEFLAPL-KPVAIRIVRN-AHGN---------KTGY---IFVDFSNEEE 62 (91)
T ss_dssp CCCCCEEEEECCCSSC----------CHHHHHHHHTTS-CCSEEEEEEC-TTSC---------EEEE---EEEECSSHHH
T ss_pred CCCccEEEEECCCCCC----------CHHHHHHHHhhC-CceEEEEEEC-CCCC---------CceE---EEEEECCHHH
Confidence 3556799999999887 899999999999 9999999987 4433 2366 9999999999
Q ss_pred HHHHHHHhcCccceecCceeEEEE
Q 019393 258 FYNTLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 258 F~kAM~aLrGmKL~~kGk~l~a~i 281 (341)
..+||+ |.|..+ .|+.+.+.+
T Consensus 63 a~~A~~-~~g~~~--~gr~i~v~~ 83 (91)
T 2dgw_A 63 VKQALK-CNREYM--GGRYIEVFR 83 (91)
T ss_dssp HHHHHH-SCSEEE--TTEEEEEEE
T ss_pred HHHHHH-hCCcee--CCcEEEEEE
Confidence 999999 999988 787655443
No 140
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=98.60 E-value=6.1e-08 Score=87.70 Aligned_cols=82 Identities=15% Similarity=0.136 Sum_probs=67.3
Q ss_pred CCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccC--ceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchH
Q 019393 180 EPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFG--KIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRD 257 (341)
Q Consensus 180 RPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FG--kIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~ 257 (341)
..-||||.|||..+ +++.|+.+|++|| +|..|.|+.+...++. .|+ |||+|....+
T Consensus 67 ~~~~lfVgnL~~~~----------te~~L~~~F~~~G~~~v~~v~i~~d~~tg~s---------kGf---aFV~f~~~~~ 124 (229)
T 3q2s_C 67 KRIALYIGNLTWWT----------TDEDLTEAVHSLGVNDILEIKFFENRANGQS---------KGF---ALVGVGSEAS 124 (229)
T ss_dssp --CEEEEESCCTTC----------CHHHHHHHHHTTTCCCEEEEEEEECTTTCCE---------EEE---EEEEESCTTH
T ss_pred CccEEEEeCCCCCC----------CHHHHHHHHHHHCCcceEEEEEEecCCCCcc---------ceE---EEEEECCHHH
Confidence 44589999999888 8999999999999 9999999987544442 377 9999999999
Q ss_pred HHHHHHHhcCccceecCceeEEEEEEeecccC
Q 019393 258 FYNTLKVLCGRSMQKQGSQLKADYEVTWDKDG 289 (341)
Q Consensus 258 F~kAM~aLrGmKL~~kGk~l~a~ikV~fD~tk 289 (341)
..+||+.|.|..| .|+.+ +|.|.+..
T Consensus 125 a~~Ai~~lng~~~--~Gr~l----~V~~a~~~ 150 (229)
T 3q2s_C 125 SKKLMDLLPKREL--HGQNP----VVTPVNKQ 150 (229)
T ss_dssp HHHHHTTSTTSCB--TTBCC----EEEECCHH
T ss_pred HHHHHHHcCCCeE--CCEEe----EEEECCCC
Confidence 9999999999998 78765 45555433
No 141
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=98.59 E-value=1.3e-07 Score=78.90 Aligned_cols=75 Identities=17% Similarity=0.232 Sum_probs=58.9
Q ss_pred CeEEEcCCccccccCCCCCCCCcHHH----HHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchH
Q 019393 182 DTIVIKGVPSRWFAEPRVSSKPSMLV----THTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRD 257 (341)
Q Consensus 182 DTI~l~gLP~rWFa~~~~s~kPSE~v----l~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~ 257 (341)
-||||.|||... +++. |..+|++||+|..|.|+.. ++ ..|. |||+|....+
T Consensus 30 ~~LfV~nL~~~~----------~e~~L~~~L~~~F~~~G~I~~v~i~~~---~~---------~rG~---aFV~F~~~~~ 84 (127)
T 2a3j_A 30 QVVLITNINPEV----------PKEKLQALLYALASSQGDILDIVVDLS---DD---------NSGK---AYIVFATQES 84 (127)
T ss_dssp SEEEEESCCTTS----------CHHHHHHHHHHHHHHHSCEEEEEECCC---CS---------SCCC---EEEEESSHHH
T ss_pred CEEEEeCCCCCC----------CHHHHHHHHHHHhccCCCeEEEEeccC---CC---------cCCE---EEEEECCHHH
Confidence 589999999655 5554 4579999999998888531 11 2377 9999999999
Q ss_pred HHHHHHHhcCccceecCceeEEEEEEeecc
Q 019393 258 FYNTLKVLCGRSMQKQGSQLKADYEVTWDK 287 (341)
Q Consensus 258 F~kAM~aLrGmKL~~kGk~l~a~ikV~fD~ 287 (341)
..+|+++|.|..| .|+.+ +|.|-+
T Consensus 85 A~~Ai~~lng~~l--~gr~l----~V~~a~ 108 (127)
T 2a3j_A 85 AQAFVEAFQGYPF--QGNPL----VITFSE 108 (127)
T ss_dssp HHHHHHHSTTCCC--TTSCC----EEEECC
T ss_pred HHHHHHHHCCCEe--CCCEE----EEEEcc
Confidence 9999999999988 78855 455544
No 142
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=98.59 E-value=8.8e-08 Score=94.68 Aligned_cols=80 Identities=20% Similarity=0.355 Sum_probs=66.4
Q ss_pred CCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHH
Q 019393 179 QEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDF 258 (341)
Q Consensus 179 eRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F 258 (341)
.-.-||||.|||..+ ++..|..+|++||+|..|.|+.+...++. .|+ |||+|....+.
T Consensus 100 ~~~~~lfV~nL~~~~----------te~~L~~~F~~~G~I~~v~i~~d~~tg~~---------kG~---aFV~F~~~e~A 157 (437)
T 3pgw_S 100 DAFKTLFVARVNYDT----------TESKLRREFEVYGPIKRIHMVYSKRSGKP---------RGY---AFIEYEHERDM 157 (437)
T ss_pred CCCCEEEEeCCCCCC----------CHHHHHHHHHHcCCeeEEEeeccCCCCCc---------cce---EEEeeccHHHH
Confidence 334599999999887 88999999999999999999876443332 367 99999999999
Q ss_pred HHHHHHhcCccceecCceeEEEEE
Q 019393 259 YNTLKVLCGRSMQKQGSQLKADYE 282 (341)
Q Consensus 259 ~kAM~aLrGmKL~~kGk~l~a~ik 282 (341)
.+||++|.|..| .|+.|.|++.
T Consensus 158 ~~Ai~~lng~~i--~gr~i~V~~a 179 (437)
T 3pgw_S 158 HSAYKHADGKKI--DGRRVLVDVE 179 (437)
T ss_pred HHHHHHcCCCEE--CCEEEEEEEe
Confidence 999999999988 7876555543
No 143
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.58 E-value=1.1e-07 Score=79.16 Aligned_cols=72 Identities=14% Similarity=0.196 Sum_probs=61.5
Q ss_pred CeEEE--cCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHH
Q 019393 182 DTIVI--KGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFY 259 (341)
Q Consensus 182 DTI~l--~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~ 259 (341)
-+|+| .|||... +|+.|+.+|++||+|.+|.||.. .|+ |||+|.+..+..
T Consensus 26 ~~L~V~Ng~L~~~~----------te~~L~~~F~~fG~v~~v~i~~~---------------rgf---aFV~f~~~~~A~ 77 (114)
T 2cq2_A 26 QSLVVANGGLGNGV----------SRNQLLPVLEKCGLVDALLMPPN---------------KPY---SFARYRTTEESK 77 (114)
T ss_dssp SEEEEETCTGGGTC----------CHHHHHHHHHHHSCEEEEECCTT---------------CSC---EEEEESSHHHHH
T ss_pred CEEEEECCCCCCCC----------CHHHHHHHHHhcCCeEEEEEeCC---------------CCE---EEEEECCHHHHH
Confidence 57999 7899988 89999999999999999999742 166 999999999999
Q ss_pred HHHHHhcCccc---eecCceeEEEE
Q 019393 260 NTLKVLCGRSM---QKQGSQLKADY 281 (341)
Q Consensus 260 kAM~aLrGmKL---~~kGk~l~a~i 281 (341)
+||++|.|..+ +-+|+.+.+++
T Consensus 78 ~Ai~~lnG~~~~~~lg~g~~l~v~~ 102 (114)
T 2cq2_A 78 RAYVTLNGKEVVDDLGQKITLYLNF 102 (114)
T ss_dssp HHHHHTTTCEEECTTSCEEECEEEE
T ss_pred HHHHHhCCCEEccccCCCcEEEEEe
Confidence 99999999987 22466776666
No 144
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=98.58 E-value=3.7e-07 Score=82.43 Aligned_cols=113 Identities=18% Similarity=0.295 Sum_probs=79.3
Q ss_pred HHHHhhccCeeEEecCccceeEEEcccCCCchhhhhcHHHHhhccCCCCCCCCCCCCeEEEcCCccc-cccCCCCCCCCc
Q 019393 126 KYIVEKMDGIELNLEGVKYKLSVVIPIADDFEKMRKDWEEFYAFGNRGYSRGKQEPDTIVIKGVPSR-WFAEPRVSSKPS 204 (341)
Q Consensus 126 ~~l~~kLdG~~lkLsGf~~~LkV~a~es~dFp~~rhdWesff~d~~~~~~~~geRPDTI~l~gLP~r-WFa~~~~s~kPS 204 (341)
...++.|+|..| .| ..|.|..+....-. +-. + ......-+|+|.|||.. + +
T Consensus 173 ~~A~~~l~g~~~--~g--~~l~v~~a~~~~~~----~~~----~------~~~~~~~~l~v~nlp~~~~----------t 224 (292)
T 2ghp_A 173 RYCVEKLNGLKI--EG--YTLVTKVSNPLEKS----KRT----D------SATLEGREIMIRNLSTELL----------D 224 (292)
T ss_dssp HHHHHHHTTCEE--TT--EECEEEECCCC-----------------------CCTTTEEEEEEECTTTC----------C
T ss_pred HHHHHHhCCCEe--CC--cEEEEEECCCCccc----ccc----c------ccCCCCceEEEECCCcccC----------C
Confidence 355778999876 56 55666654421111 000 0 01344579999999987 7 8
Q ss_pred HHHHHHHhhccCceeeeeecCCCC-CCCCCCCCCCCcccceeEEEEEEeccchHHHHHHHHhcCccceecCceeEEEE
Q 019393 205 MLVTHTVFSTFGKIRNLNVAEDDD-PGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 205 E~vl~~vFe~FGkIRnvDIP~~Dp-yr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM~aLrGmKL~~kGk~l~a~i 281 (341)
++.|+.+|++||.|..|.|+.+.. .+. ..|. |||+|....+..+|| +|.|..+ .|+.+.+.+
T Consensus 225 ~~~l~~~F~~~G~v~~v~i~~~~~~tg~---------~~g~---afV~F~~~~~A~~A~-~l~g~~~--~g~~i~V~~ 287 (292)
T 2ghp_A 225 ENLLRESFEGFGSIEKINIPAGQKEHSF---------NNCC---AFMVFENKDSAERAL-QMNRSLL--GNREISVSL 287 (292)
T ss_dssp HHHHHHHHGGGSCEEEEECCSCCC---C---------CCEE---EEEEESSHHHHHHHG-GGTTEEE--TTEEEEEEE
T ss_pred HHHHHHHHhccCCeeEEEEEecCCcCCC---------CceE---EEEEeCCHHHHHHHH-HhcCCEE--CCcEEEEEE
Confidence 999999999999999999988432 122 2366 999999999999999 9999987 787655443
No 145
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.57 E-value=5.3e-08 Score=74.76 Aligned_cols=77 Identities=17% Similarity=0.245 Sum_probs=61.3
Q ss_pred CCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHH
Q 019393 179 QEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDF 258 (341)
Q Consensus 179 eRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F 258 (341)
..+-||||.|||..+ +++-|+.+|+.||.|+.+ +..+ ...|+ |||+|....+.
T Consensus 14 ~~~~~l~V~nL~~~~----------t~~~l~~~F~~~g~v~~~-----~~~~---------~~~g~---afV~f~~~~~a 66 (96)
T 1fjc_A 14 RAARTLLAKNLSFNI----------TEDELKEVFEDALEIRLV-----SQDG---------KSKGI---AYIEFKSEADA 66 (96)
T ss_dssp TGGGEEEEESCCSSC----------CHHHHHHHHCSEEEECCE-----EETT---------EEEEE---EEEEESSHHHH
T ss_pred CCCCEEEEeCCCCCC----------CHHHHHHHHhhCCcEEEe-----CCCC---------CcceE---EEEEECCHHHH
Confidence 445799999999887 889999999999999876 1111 13366 99999999999
Q ss_pred HHHHHHhcCccceecCceeEEEEEEeeccc
Q 019393 259 YNTLKVLCGRSMQKQGSQLKADYEVTWDKD 288 (341)
Q Consensus 259 ~kAM~aLrGmKL~~kGk~l~a~ikV~fD~t 288 (341)
.+|++.|.|..+ .|+. |+|.|-+.
T Consensus 67 ~~A~~~l~g~~~--~g~~----l~v~~a~~ 90 (96)
T 1fjc_A 67 EKNLEEKQGAEI--DGRS----VSLYYTGE 90 (96)
T ss_dssp HHHHHHTTEEEE--TTEE----EEEEECSS
T ss_pred HHHHHHhCCCEE--CCeE----EEEEEcCC
Confidence 999999999888 7876 45555443
No 146
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=98.57 E-value=2.3e-07 Score=78.86 Aligned_cols=83 Identities=13% Similarity=0.192 Sum_probs=66.8
Q ss_pred CCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHH
Q 019393 180 EPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFY 259 (341)
Q Consensus 180 RPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~ 259 (341)
+.=.|||.|||..= +++.|+++|++||+|..|.|+.. + . .|.|||+|.+..+..
T Consensus 27 ~VL~I~V~NL~~~v----------te~~L~~lFs~yG~V~~V~i~~~-~-------------~--gfqAFVef~~~~~A~ 80 (130)
T 3zzy_A 27 PVLRIIVENLFYPV----------TLDVLHQIFSKFGTVLKIITFTK-N-------------N--QFQALLQYADPVSAQ 80 (130)
T ss_dssp SEEEEEEESCCSCC----------CHHHHHHHHTTSSCEEEEEEEEE-T-------------T--EEEEEEEESCHHHHH
T ss_pred ceEEEEECCCCCCC----------CHHHHHHHHhCcCCEEEEEEEcC-C-------------C--CcEEEEEECCHHHHH
Confidence 33468899998443 89999999999999999988641 0 1 267999999999999
Q ss_pred HHHHHhcCccceecCceeEEEEEEeecccCCCc
Q 019393 260 NTLKVLCGRSMQKQGSQLKADYEVTWDKDGFFW 292 (341)
Q Consensus 260 kAM~aLrGmKL~~kGk~l~a~ikV~fD~tkhlS 292 (341)
+||++|.|..+ .|. .|.++|+|=+.+.+.
T Consensus 81 ~Ai~~LnG~~i--~g~--~~~LrI~~ak~~~l~ 109 (130)
T 3zzy_A 81 HAKLSLDGQNI--YNA--CCTLRIDFSKLTSLN 109 (130)
T ss_dssp HHHHHHTTCEE--ETT--EEEEEEEECSCSSCC
T ss_pred HHHHHcCCCee--cCC--CcEEEEEecCCCcee
Confidence 99999999999 442 478899998866543
No 147
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.57 E-value=2.2e-07 Score=77.90 Aligned_cols=77 Identities=16% Similarity=0.226 Sum_probs=62.3
Q ss_pred EEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHHH
Q 019393 184 IVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTLK 263 (341)
Q Consensus 184 I~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM~ 263 (341)
|||.|||..- +++.|+.+|++||+|..|.|+. + . | |.|||+|.+-.+..+||+
T Consensus 28 l~V~NL~~~v----------t~~~L~~~Fs~yG~V~~v~i~~-----~-~---------G--f~aFVef~~~~~A~~A~~ 80 (124)
T 2e5i_A 28 LSIQNPLYPI----------TVDVLYTVCNPVGKVQRIVIFK-----R-N---------G--IQAMVEFESVLCAQKAKA 80 (124)
T ss_dssp EEEESCCSCC----------CHHHHHHHHTTTSCEEEEEEEE-----S-S---------S--EEEEEEESSHHHHHHHHH
T ss_pred EEEcCcCCCC----------CHHHHHHHHHhcCCEEEEEEEe-----C-C---------C--CEEEEEECCHHHHHHHHH
Confidence 4689999554 8999999999999999999953 1 1 3 469999999999999999
Q ss_pred HhcCccceecCceeEEEEEEeecccCCC
Q 019393 264 VLCGRSMQKQGSQLKADYEVTWDKDGFF 291 (341)
Q Consensus 264 aLrGmKL~~kGk~l~a~ikV~fD~tkhl 291 (341)
+|.|..| .|+ .|.|+|.|-+.+-+
T Consensus 81 ~LnG~~i--~g~--~~~l~V~~Ak~~~l 104 (124)
T 2e5i_A 81 ALNGADI--YAG--CCTLKIEYARPTRL 104 (124)
T ss_dssp HHTTCCC--BTT--BSEEEEECCSCSCC
T ss_pred HhCCCEe--cCC--CeEEEEEEecCCcc
Confidence 9999999 553 24678888776543
No 148
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=98.56 E-value=1.3e-07 Score=77.89 Aligned_cols=69 Identities=19% Similarity=0.327 Sum_probs=59.1
Q ss_pred eEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHH
Q 019393 183 TIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTL 262 (341)
Q Consensus 183 TI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM 262 (341)
||||.|||..| +++.|+.+|++||+|..|.|+.+...+. ....|. |||+|....+..+||
T Consensus 5 ~l~V~nLp~~~----------te~~l~~~F~~~G~i~~v~i~~~~~~~~-------~~~~g~---afV~f~~~~~A~~A~ 64 (175)
T 3nmr_A 5 KMFVGQVPRTW----------SEKDLRELFEQYGAVYEINVLRDRSQNP-------PQSKGC---CFVTFYTRKAALEAQ 64 (175)
T ss_dssp EEEEESCCTTC----------CHHHHHHHHHTTSCEEEEEEEEECSSSS-------CEEEEE---EEEEESSHHHHHHHH
T ss_pred EEEEeCCCCCC----------CHHHHHHHHHhCCCEEEEEEEecCCCCC-------CCcceE---EEEEECCHHHHHHHH
Confidence 89999999998 8999999999999999999987643320 013366 999999999999999
Q ss_pred HHhcCccce
Q 019393 263 KVLCGRSMQ 271 (341)
Q Consensus 263 ~aLrGmKL~ 271 (341)
+.|.|+.+.
T Consensus 65 ~~l~~~~~~ 73 (175)
T 3nmr_A 65 NALHNMKVL 73 (175)
T ss_dssp HHHTTTCCC
T ss_pred HHhcCcEEc
Confidence 999999885
No 149
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.55 E-value=3.4e-08 Score=76.71 Aligned_cols=76 Identities=20% Similarity=0.226 Sum_probs=60.5
Q ss_pred CCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHH
Q 019393 179 QEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDF 258 (341)
Q Consensus 179 eRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F 258 (341)
..+-||||.|||..+ +++.|+.+|+.||.|.. .|+.+...++ ..|+ |||+|....+.
T Consensus 15 ~~~~~l~V~nLp~~~----------t~~~l~~~F~~~G~v~~-~~~~~~~~g~---------~~g~---afV~f~~~~~a 71 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNK----------SVAELKVAISELFAKND-LAVVDVRTGT---------NRKF---GYVDFESAEDL 71 (101)
T ss_dssp SCSEEEEEECCCTTS----------CHHHHHHHHHHHHHHHT-CCCCEEEEET---------TTTE---EEEEESSHHHH
T ss_pred CCCCEEEEeCCCCCC----------CHHHHHHHHHHhCCcce-EEEecCCCCC---------cCcE---EEEEECCHHHH
Confidence 345699999999888 89999999999999988 4444333332 2377 99999999999
Q ss_pred HHHHHHhcCccceecCceeEEE
Q 019393 259 YNTLKVLCGRSMQKQGSQLKAD 280 (341)
Q Consensus 259 ~kAM~aLrGmKL~~kGk~l~a~ 280 (341)
.+||+ |.|..+ .|+.+.+.
T Consensus 72 ~~A~~-l~g~~~--~g~~l~V~ 90 (101)
T 1fj7_A 72 EKALE-LTGLKV--FGNEIKLE 90 (101)
T ss_dssp HHHHH-GGGCCB--TTBCCEEE
T ss_pred HHHHh-cCCcEE--CCcEEEEE
Confidence 99999 999998 68765443
No 150
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=98.54 E-value=1.5e-07 Score=79.24 Aligned_cols=76 Identities=17% Similarity=0.281 Sum_probs=62.1
Q ss_pred CCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHH
Q 019393 179 QEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDF 258 (341)
Q Consensus 179 eRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F 258 (341)
....||+|.|||..+ +++.|+.+|++||.|..|.|+.+...+. ..|+ |||+|....+.
T Consensus 102 ~~~~~l~V~nLp~~~----------t~~~l~~~F~~~G~i~~v~i~~~~~~g~---------~~g~---afV~F~~~~~A 159 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDT----------EEHHLRDYFEQYGKIEVIEIMTDRGSGK---------KRGF---AFVTFDDHDSV 159 (196)
T ss_dssp -CCSEEEEECCTTTC----------CHHHHHHHHTTTSCEEEEEEEECTTTCC---------EEEE---EEEEESSHHHH
T ss_pred CCcceEEEeCCCCCC----------CHHHHHHHHhcCCCeEEEEEeecCCCCC---------ccce---EEEEECCHHHH
Confidence 345799999999988 8999999999999999999998754433 2366 99999999999
Q ss_pred HHHHHHhcCccceecCceeEE
Q 019393 259 YNTLKVLCGRSMQKQGSQLKA 279 (341)
Q Consensus 259 ~kAM~aLrGmKL~~kGk~l~a 279 (341)
.+|+.. .|..+ .|+.+.+
T Consensus 160 ~~A~~~-~~~~~--~G~~i~v 177 (196)
T 1l3k_A 160 DKIVIQ-KYHTV--NGHNCEV 177 (196)
T ss_dssp HHHHHC-SCCEE--TTEECEE
T ss_pred HHHHHh-CCcEE--CCEEEEE
Confidence 999987 57766 7876443
No 151
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.53 E-value=1.8e-07 Score=71.54 Aligned_cols=71 Identities=13% Similarity=0.172 Sum_probs=59.4
Q ss_pred CCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCc-eeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchH
Q 019393 179 QEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGK-IRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRD 257 (341)
Q Consensus 179 eRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGk-IRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~ 257 (341)
..+-||||.|||..+ +++.|+.+|++||. |..+.|. ..|+ |||+|....+
T Consensus 6 ~~~~~l~V~nLp~~~----------t~~~l~~~F~~~G~vv~~~~~~----------------~~g~---afV~f~~~~~ 56 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAV----------TADDLRQLFGDRKLPLAGQVLL----------------KSGY---AFVDYPDQNW 56 (93)
T ss_dssp CCCCCEEEECCCTTC----------CHHHHHHHHHHTTCCCSSCEEE----------------ETTE---EEECCSCHHH
T ss_pred CCCcEEEEeCCCCCC----------CHHHHHHHHHHcCCceEEEEEc----------------CCCE---EEEEECCHHH
Confidence 455699999999887 89999999999999 7777773 1266 9999999999
Q ss_pred HHHHHHHhcC-ccceecCceeEEE
Q 019393 258 FYNTLKVLCG-RSMQKQGSQLKAD 280 (341)
Q Consensus 258 F~kAM~aLrG-mKL~~kGk~l~a~ 280 (341)
..+|+++|.| ..+ .|+.+.++
T Consensus 57 A~~A~~~l~g~~~~--~g~~l~v~ 78 (93)
T 2cqh_A 57 AIRAIETLSGKVEL--HGKIMEVD 78 (93)
T ss_dssp HHHHHHHHTTTCEE--TTEECEEE
T ss_pred HHHHHHHccCCeeE--CCEEEEEE
Confidence 9999999999 676 78665443
No 152
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=98.53 E-value=1.7e-07 Score=74.24 Aligned_cols=76 Identities=18% Similarity=0.194 Sum_probs=63.7
Q ss_pred CCCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCc---eeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEecc
Q 019393 178 KQEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGK---IRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEK 254 (341)
Q Consensus 178 geRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGk---IRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~e 254 (341)
...+-||+|.|||..+ +++-|+..|+.||. |..|.|+.+.. ++.. |+ |||+|..
T Consensus 8 ~~~~~~l~V~nLp~~~----------te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~---------G~---afV~F~~ 64 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSC----------TMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRR---------GD---ALIEMES 64 (107)
T ss_dssp CSSCCEEEEECCCSSC----------CSHHHHHHTTTSCBTTTTTTEECCCCTT-STTC---------SE---EEEEBSS
T ss_pred CCCccEEEEeCCCCCC----------CHHHHHHHHHhcCCcCCcceEEEEECCC-CCEe---------eE---EEEEECC
Confidence 4566799999999887 88899999999999 99999987644 5433 77 9999999
Q ss_pred chHHHHHHHHhcCccceecCceeEE
Q 019393 255 YRDFYNTLKVLCGRSMQKQGSQLKA 279 (341)
Q Consensus 255 y~~F~kAM~aLrGmKL~~kGk~l~a 279 (341)
..+..+||+ |.|..| .|+.+.+
T Consensus 65 ~~~a~~Al~-~~~~~~--~gr~i~V 86 (107)
T 2lmi_A 65 EQDVQKALE-KHRMYM--GQRYVEV 86 (107)
T ss_dssp HHHHHHHHT-TTTCCS--SSSCCCC
T ss_pred HHHHHHHHH-hCccee--CCeEEEE
Confidence 999999999 888777 7775443
No 153
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=98.53 E-value=1.4e-07 Score=82.51 Aligned_cols=73 Identities=21% Similarity=0.270 Sum_probs=62.4
Q ss_pred CeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHH
Q 019393 182 DTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNT 261 (341)
Q Consensus 182 DTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kA 261 (341)
-+|+|.|||..+ +++.|+.+|++||.|..|.|+.+... ..|+ |||+|....+..+|
T Consensus 104 ~~l~v~nl~~~~----------t~~~l~~~F~~~G~i~~~~i~~d~~~-----------~~g~---~fV~f~~~~~a~~A 159 (213)
T 4f02_A 104 GNIFIKNLDKSI----------DNKALYDTFSAFGNILSCKVVCDENG-----------SKGY---GFVHFETQEAAERA 159 (213)
T ss_dssp TEEEEESCCTTC----------CHHHHHHHHGGGSCEEEEEEEEETTE-----------EEEE---EEEEESSHHHHHHH
T ss_pred ccceECCccccc----------HHHHHHHHHhhcCCeEEEEeeccCCC-----------CceE---EEEEeCCHHHHHHH
Confidence 489999999888 89999999999999999999875211 2366 99999999999999
Q ss_pred HHHhcCccceecCceeEEE
Q 019393 262 LKVLCGRSMQKQGSQLKAD 280 (341)
Q Consensus 262 M~aLrGmKL~~kGk~l~a~ 280 (341)
|+.|.|+.| .|+.+.++
T Consensus 160 i~~lng~~~--~g~~i~V~ 176 (213)
T 4f02_A 160 IEKMNGMLL--NDRKVFVG 176 (213)
T ss_dssp HHHHTTCEE--TTEECEEE
T ss_pred HHHhCCCEE--CCEEEEEE
Confidence 999999988 88766543
No 154
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=97.93 E-value=1e-08 Score=81.89 Aligned_cols=75 Identities=21% Similarity=0.422 Sum_probs=61.5
Q ss_pred CCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceee--------eeecCCCCCCCCCCCCCCCcccceeEEEEEEe
Q 019393 181 PDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRN--------LNVAEDDDPGKDADEDGGDIISGLHCKIVVQF 252 (341)
Q Consensus 181 PDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRn--------vDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy 252 (341)
.-||||.|||..+ +++.|+.+|++||.|.. |.|+.+...+. ..|+ |||+|
T Consensus 7 ~~~l~V~nLp~~~----------t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~---------~~g~---afV~f 64 (116)
T 2lcw_A 7 NNTIFVQGLGENV----------TIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGK---------LKGE---ATVSF 64 (116)
Confidence 3589999999887 77889999999999998 77876633333 2366 99999
Q ss_pred ccchHHHHHHHHhcCccceecCceeEE
Q 019393 253 EKYRDFYNTLKVLCGRSMQKQGSQLKA 279 (341)
Q Consensus 253 ~ey~~F~kAM~aLrGmKL~~kGk~l~a 279 (341)
....+..+||++|.|..+ .|+.+.+
T Consensus 65 ~~~~~A~~Ai~~l~g~~~--~g~~l~V 89 (116)
T 2lcw_A 65 DDPPSAKAAIDWFDGKEF--SGNPIKV 89 (116)
Confidence 999999999999999888 6765443
No 155
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=98.52 E-value=1.7e-07 Score=75.61 Aligned_cols=69 Identities=9% Similarity=0.134 Sum_probs=61.2
Q ss_pred eEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHH
Q 019393 183 TIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTL 262 (341)
Q Consensus 183 TI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM 262 (341)
-|+|.||+.+. +|+.|+.+|+.||+|.++.|.. ..|+ |||.|..-.+..+|+
T Consensus 9 wL~VgNL~~~~----------te~~L~~lF~q~G~V~~~~l~~---------------~kGf---aFVey~~~~eA~~Ai 60 (89)
T 2wbr_A 9 WLLLKNLTAQI----------DGPTLRTLCMQHGPLVSFHPYL---------------NQGI---ALCKYTTREEANKAQ 60 (89)
T ss_dssp EEEEECCCTTC----------CCHHHHHHHHHHSCEEEEEEET---------------TTTE---EEEEESSHHHHHHHH
T ss_pred eEEEeCCCccC----------CHHHHHHHHHhhCCEEEEEEcC---------------CCcE---EEEEECCHHHHHHHH
Confidence 68999999887 8999999999999999999965 1388 999999999999999
Q ss_pred HHhcCccceecCceeEEEE
Q 019393 263 KVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 263 ~aLrGmKL~~kGk~l~a~i 281 (341)
++|.|.+| .|+.+.+++
T Consensus 61 ~~Ln~~~l--~gr~I~V~~ 77 (89)
T 2wbr_A 61 MALNNCVL--ANTTIFAES 77 (89)
T ss_dssp HHHTTEEE--TTEEEEEEC
T ss_pred HHhcCCEE--CCcEEEEEE
Confidence 99999999 888766554
No 156
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=98.52 E-value=1.6e-07 Score=71.60 Aligned_cols=76 Identities=13% Similarity=0.219 Sum_probs=63.6
Q ss_pred CCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHH
Q 019393 181 PDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYN 260 (341)
Q Consensus 181 PDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~k 260 (341)
.-||||.|||..+ +++.|+.+|++| .|..+.|+ + ..|+ |||+|....+..+
T Consensus 5 ~~~l~V~nLp~~~----------t~~~l~~~F~~~-~v~~~~i~------~---------~~g~---afV~f~~~~~a~~ 55 (88)
T 1wg1_A 5 SSGILVKNLPQDS----------NCQEVHDLLKDY-DLKYCYVD------R---------NKRT---AFVTLLNGEQAQN 55 (88)
T ss_dssp CCCEEEESCCSSC----------CHHHHHHHTCSS-CCCCEEEE------G---------GGTE---EEECCSCHHHHHH
T ss_pred CCEEEEeCCCCCC----------CHHHHHHHHhhC-CeEEEEEe------C---------CCcE---EEEEECCHHHHHH
Confidence 3589999999887 899999999999 99999995 1 2367 9999999999999
Q ss_pred HHHHhcCccceecCceeEEEEEEeecccCCC
Q 019393 261 TLKVLCGRSMQKQGSQLKADYEVTWDKDGFF 291 (341)
Q Consensus 261 AM~aLrGmKL~~kGk~l~a~ikV~fD~tkhl 291 (341)
|++.|.|..+ .|+. |+|.|.+++.+
T Consensus 56 Ai~~l~g~~~--~g~~----l~V~~a~~~~~ 80 (88)
T 1wg1_A 56 AIQMFHQYSF--RGKD----LIVQLQPTDAL 80 (88)
T ss_dssp HHHHHTTEEE--TTEE----EEEEECCCCCC
T ss_pred HHHHhCCCeE--CCcE----EEEEEcCCCce
Confidence 9999999988 7765 45666665543
No 157
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=98.51 E-value=7e-08 Score=79.70 Aligned_cols=83 Identities=13% Similarity=0.182 Sum_probs=63.9
Q ss_pred CCCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeee-cCCC----CCCCCCCCCCCCcccceeEEEEEEe
Q 019393 178 KQEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNV-AEDD----DPGKDADEDGGDIISGLHCKIVVQF 252 (341)
Q Consensus 178 geRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDI-P~~D----pyr~~~~~~~g~~~~gL~feayVQy 252 (341)
+...-||||.|||..+ +++.|+.+|++||.|..+.| .+.| ..+. ..|+ |||+|
T Consensus 42 ~~~~~~l~V~nLp~~~----------te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~---------~~g~---afV~f 99 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHV----------QEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGR---------MKGQ---AFIGL 99 (143)
T ss_dssp CSCCSEEEEEEECTTC----------CHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETT---------TEEE---EEEEC
T ss_pred CCCCCEEEEeCCCCCC----------CHHHHHHHHHHhCCcccccccceeeEEeccCCC---------cccE---EEEEe
Confidence 4555799999999888 89999999999999988632 1111 1111 2367 99999
Q ss_pred ccchHHHHHHHHhcCccceecCceeEEEEEEeeccc
Q 019393 253 EKYRDFYNTLKVLCGRSMQKQGSQLKADYEVTWDKD 288 (341)
Q Consensus 253 ~ey~~F~kAM~aLrGmKL~~kGk~l~a~ikV~fD~t 288 (341)
....+..+||+.|.|..+ .|+.+ +|.|-++
T Consensus 100 ~~~~~A~~Ai~~lng~~~--~g~~l----~V~~a~~ 129 (143)
T 3egn_A 100 PNEKAAAKALKEANGYVL--FGKPM----VVQFARS 129 (143)
T ss_dssp SSHHHHHHHHHHHTTBEE--TTEEC----EEEECCC
T ss_pred CCHHHHHHHHHHhCCCEe--CCcEE----EEEECCC
Confidence 999999999999999998 78665 5555554
No 158
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.51 E-value=2.6e-07 Score=73.98 Aligned_cols=69 Identities=10% Similarity=0.159 Sum_probs=55.9
Q ss_pred CCCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchH
Q 019393 178 KQEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRD 257 (341)
Q Consensus 178 geRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~ 257 (341)
+...-||||.|||..+ +++.|+.+|++||+|. +.|+.+..... .+...|+ |||+|....+
T Consensus 5 ~~~~~~lfVgnLp~~~----------te~~L~~~F~~~G~i~-~~~~~~~~~~~------~g~~~G~---aFV~f~~~~~ 64 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDI----------DEDEITASFRRFGPLV-VDWPHKAESKS------YFPPKGY---AFLLFQEESS 64 (114)
T ss_dssp SSCCCCEEEECCCTTC----------CHHHHHHHTTTTCCCC-EECTTSSSSCC------CSCTTSE---EEECCSSHHH
T ss_pred CCCCCEEEEcCCCCCC----------CHHHHHHHHHhcCCEE-EEEeecCCCCC------CCCcccE---EEEEECCHHH
Confidence 3456799999999888 8999999999999999 88887654310 0113477 9999999999
Q ss_pred HHHHHHHhc
Q 019393 258 FYNTLKVLC 266 (341)
Q Consensus 258 F~kAM~aLr 266 (341)
..+||++|.
T Consensus 65 a~~Ai~~~~ 73 (114)
T 2dnl_A 65 VQALIDACL 73 (114)
T ss_dssp HHHHHHHSE
T ss_pred HHHHHHhhh
Confidence 999999993
No 159
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=98.51 E-value=2.5e-07 Score=77.82 Aligned_cols=78 Identities=12% Similarity=0.229 Sum_probs=63.2
Q ss_pred CCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHH
Q 019393 179 QEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDF 258 (341)
Q Consensus 179 eRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F 258 (341)
+..-||||.|||..+ +++.|+.+|+.||+|..|.|+.+...+. ..|+ |||+|....+.
T Consensus 11 ~~~~~l~V~nLp~~~----------te~~l~~~F~~~G~i~~v~i~~~~~~g~---------~~g~---afV~f~~~~~A 68 (196)
T 1l3k_A 11 EQLRKLFIGGLSFET----------TDESLRSHFEQWGTLTDCVVMRDPNTKR---------SRGF---GFVTYATVEEV 68 (196)
T ss_dssp GGGGEEEEESCCTTC----------CHHHHHHHHGGGSCEEEEEEEECTTTCC---------EEEE---EEEEESSHHHH
T ss_pred CCCCEEEEeCCCCCC----------CHHHHHHHHHhCCCEEEEEEEEcCCCCC---------ccce---EEEEeCCHHHH
Confidence 344599999999988 8999999999999999999987643332 2366 99999999999
Q ss_pred HHHHHHhcCccceecCceeEEEE
Q 019393 259 YNTLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 259 ~kAM~aLrGmKL~~kGk~l~a~i 281 (341)
.+||+. .|..+ .|+.+.+..
T Consensus 69 ~~A~~~-~~~~~--~g~~l~v~~ 88 (196)
T 1l3k_A 69 DAAMNA-RPHKV--DGRVVEPKR 88 (196)
T ss_dssp HHHHHT-CSCEE--TTEECEEEE
T ss_pred HHHHhc-CCCEE--CCEEeeeec
Confidence 999987 77666 777665544
No 160
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=98.50 E-value=3.1e-07 Score=81.30 Aligned_cols=74 Identities=16% Similarity=0.296 Sum_probs=62.5
Q ss_pred eEEEcCCc-cccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHH
Q 019393 183 TIVIKGVP-SRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNT 261 (341)
Q Consensus 183 TI~l~gLP-~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kA 261 (341)
||||.||| -.. +++.|+.+|++||.|..|.|+.+. .|. |||||..-.+..+|
T Consensus 6 ~l~V~nL~~~~~----------~~~~L~~~F~~~G~v~~v~i~~~~--------------~g~---afV~f~~~~~A~~A 58 (205)
T 3tyt_A 6 VLMVYGLDQSKM----------NCDRVFNVFCLYGNVEKVKFMKSK--------------PGA---AMVEMADGYAVDRA 58 (205)
T ss_dssp EEEEECCCTTTC----------CHHHHHHHHTTTSCEEEEEECTTS--------------TTC---EEEEESSHHHHHHH
T ss_pred EEEEeCCCcccC----------CHHHHHHHHHhcCCeEEEEEecCC--------------CCE---EEEEECCHHHHHHH
Confidence 89999999 676 888999999999999999997531 166 99999999999999
Q ss_pred HHHhcCccceecCceeEEEEEEeecccC
Q 019393 262 LKVLCGRSMQKQGSQLKADYEVTWDKDG 289 (341)
Q Consensus 262 M~aLrGmKL~~kGk~l~a~ikV~fD~tk 289 (341)
|+.|.|+.| .|+.+. |.|-+.+
T Consensus 59 i~~lng~~~--~g~~l~----v~~s~~~ 80 (205)
T 3tyt_A 59 ITHLNNNFM--FGQKMN----VCVSKQP 80 (205)
T ss_dssp HHHHTTCEE--TTEECE----EEECSCS
T ss_pred HHHhCCCEE--CCceEE----EEEccCC
Confidence 999999999 787654 5555433
No 161
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=98.50 E-value=2.9e-07 Score=69.01 Aligned_cols=71 Identities=14% Similarity=0.284 Sum_probs=61.8
Q ss_pred CCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhcc----C-------ceeeeeecCCCCCCCCCCCCCCCcccceeEE
Q 019393 179 QEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTF----G-------KIRNLNVAEDDDPGKDADEDGGDIISGLHCK 247 (341)
Q Consensus 179 eRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~F----G-------kIRnvDIP~~Dpyr~~~~~~~g~~~~gL~fe 247 (341)
..+-||||.|||..+ +++.|+.+|++| | .|.++.|+.+ .|+
T Consensus 4 ~~~~~l~V~nLp~~~----------t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~---------------kg~--- 55 (87)
T 2hzc_A 4 GSARRLYVGNIPFGI----------TEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD---------------KNF--- 55 (87)
T ss_dssp GGGGEEEEESCCTTC----------CHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS---------------SSE---
T ss_pred CCCCEEEEeCCCCCC----------CHHHHHHHHHHHhhhcccccCCCCcceEEEecCC---------------CcE---
Confidence 345699999999888 889999999999 8 9999999843 266
Q ss_pred EEEEeccchHHHHHHHHhcCccceecCceeEEE
Q 019393 248 IVVQFEKYRDFYNTLKVLCGRSMQKQGSQLKAD 280 (341)
Q Consensus 248 ayVQy~ey~~F~kAM~aLrGmKL~~kGk~l~a~ 280 (341)
|||+|....+..+|| .|.|..+ .|+.+.++
T Consensus 56 afV~f~~~~~a~~A~-~l~g~~~--~g~~l~V~ 85 (87)
T 2hzc_A 56 AFLEFRSVDETTQAM-AFDGIIF--QGQSLKIR 85 (87)
T ss_dssp EEEEESSHHHHHHHG-GGTTCEE--TTEECEEE
T ss_pred EEEEcCCHHHHHHHH-hcCCCEE--CCeEEEEe
Confidence 999999999999999 9999998 88877654
No 162
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=98.50 E-value=5.1e-07 Score=72.84 Aligned_cols=83 Identities=18% Similarity=0.233 Sum_probs=63.9
Q ss_pred CCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHH
Q 019393 181 PDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYN 260 (341)
Q Consensus 181 PDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~k 260 (341)
--||+|.||.... .. ..-.++-|+..|++||+|.+|.||.+.... +...|. |||+|....+..+
T Consensus 8 s~~l~l~Nm~~~~----~l-~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~--------~~~~G~---~FV~f~~~~~A~~ 71 (105)
T 2pe8_A 8 TKVVLLRNMVGAG----EV-DEDLEVETKEECEKYGKVGKCVIFEIPGAP--------DDEAVR---IFLEFERVESAIK 71 (105)
T ss_dssp CSEEEEESSSCSC----CC----CHHHHHHHGGGGSCEEEEEEEECSSCC--------TTTSEE---EEEEESSHHHHHH
T ss_pred CCEEEEEcCCChH----Hh-hHHHHHHHHHHHHhcCCEEEEEEecCCCCC--------CCCcEE---EEEEECCHHHHHH
Confidence 3599999996321 10 112688999999999999999998753111 113377 9999999999999
Q ss_pred HHHHhcCccceecCceeEEEE
Q 019393 261 TLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 261 AM~aLrGmKL~~kGk~l~a~i 281 (341)
|+++|.|+.+ .|+.+.|++
T Consensus 72 Ai~~lnG~~~--~Gr~i~v~~ 90 (105)
T 2pe8_A 72 AVVDLNGRYF--GGRVVKACF 90 (105)
T ss_dssp HHHHHTTCEE--TTEECEEEE
T ss_pred HHHHHCCCEE--CCcEEEEEE
Confidence 9999999998 899888776
No 163
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.49 E-value=1.8e-07 Score=75.85 Aligned_cols=78 Identities=19% Similarity=0.198 Sum_probs=64.9
Q ss_pred CCCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCc---eeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEecc
Q 019393 178 KQEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGK---IRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEK 254 (341)
Q Consensus 178 geRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGk---IRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~e 254 (341)
....-||+|.|||... +++-|+..|+.||. |..|.|+.+.. ++. .|+ |||+|..
T Consensus 14 ~~~~~~l~V~nLp~~~----------te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~---------~G~---afV~F~~ 70 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSC----------SIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQ---------SGE---AFVELES 70 (118)
T ss_dssp BCCCCEEEEESCCTTC----------CHHHHHHHTTTSCBTTGGGGEEEEECSS-SCE---------EEE---EEEEBSS
T ss_pred CCCCcEEEEeCCCCCC----------CHHHHHHHHHHcCCccCceeEEEEECCC-CCC---------CeE---EEEEECC
Confidence 3455689999999988 89999999999999 89999987643 442 377 9999999
Q ss_pred chHHHHHHHHhcCccceecCceeEEEE
Q 019393 255 YRDFYNTLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 255 y~~F~kAM~aLrGmKL~~kGk~l~a~i 281 (341)
..+..+||+ |.|..| .|+.+.+.+
T Consensus 71 ~~~a~~Al~-~~g~~~--~gr~i~V~~ 94 (118)
T 2db1_A 71 EDDVKLALK-KDRESM--GHRYIEVFK 94 (118)
T ss_dssp HHHHHHHGG-GTTEEE--TTEEEEEEE
T ss_pred HHHHHHHHh-cCCCeE--CCeEEEEEE
Confidence 999999999 999777 788665543
No 164
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=98.49 E-value=2.9e-07 Score=81.22 Aligned_cols=81 Identities=14% Similarity=0.153 Sum_probs=63.9
Q ss_pred CCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHH
Q 019393 180 EPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFY 259 (341)
Q Consensus 180 RPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~ 259 (341)
+.=+|||.|||..- +++.|+++|++||+|..|.|.... ..|. |||||.+-.+..
T Consensus 45 ~vl~l~VgNL~~~v----------ted~L~~~Fs~fG~V~~V~i~~k~-------------~rgf---AFVeF~d~~~A~ 98 (164)
T 1sjr_A 45 PVLRIIVENLFYPV----------TLDVLHQIFSKFGTVLKIITFTKN-------------NQFQ---ALLQYADPVSAQ 98 (164)
T ss_dssp CEEEEEECSCCSCC----------CHHHHHHHHHHHSCEEEEEEEESS-------------SCEE---EEEEESCHHHHH
T ss_pred ceEEEEEeCcCCCC----------CHHHHHHHHHhcCCEEEEEEEeCC-------------CCCE---EEEEECCHHHHH
Confidence 34467899999654 899999999999999999995321 1245 999999999999
Q ss_pred HHHHHhcCccceecCceeEEEEEEeecccCC
Q 019393 260 NTLKVLCGRSMQKQGSQLKADYEVTWDKDGF 290 (341)
Q Consensus 260 kAM~aLrGmKL~~kGk~l~a~ikV~fD~tkh 290 (341)
+|+++|.|..+.-.| |.|+|+|-+.+-
T Consensus 99 ~Ai~~LnG~~i~g~g----~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 99 HAKLSLDGQNIYNAC----CTLRIDFSKLTS 125 (164)
T ss_dssp HHHHHSTTBCSSSSC----SCEEEEECSSSS
T ss_pred HHHHHhCCCEecCCC----cEEEEEEecCCc
Confidence 999999999994323 456777877553
No 165
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=98.48 E-value=6e-07 Score=69.47 Aligned_cols=71 Identities=11% Similarity=0.291 Sum_probs=56.7
Q ss_pred CCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHH
Q 019393 179 QEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDF 258 (341)
Q Consensus 179 eRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F 258 (341)
.-|-||||.|||... +|+.|+.+|++||+|..|.|+.+ ..|+ |||+|....+.
T Consensus 9 ~~~~~l~V~~Lp~~~----------te~~L~~~F~~~G~i~~v~i~~~--------------srGf---aFV~F~~~~~A 61 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDM----------TAEELQQFFCQYGEVVDVFIPKP--------------FRAF---AFVTFADDKVA 61 (89)
T ss_dssp --CCEEEEESCCTTC----------CHHHHHHHHTTTSCEEEEECCSS--------------CCSE---EEEEESCHHHH
T ss_pred CCCCEEEEeCCCCCC----------CHHHHHHHHhccCCEEEEEEeeC--------------CCCE---EEEEECCHHHH
Confidence 456799999999998 99999999999999999999973 2277 99999998875
Q ss_pred HHHHHHhcCccceecCceeEEE
Q 019393 259 YNTLKVLCGRSMQKQGSQLKAD 280 (341)
Q Consensus 259 ~kAM~aLrGmKL~~kGk~l~a~ 280 (341)
. +|.|..+.-+|+.+.+.
T Consensus 62 ~----~~~~~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 62 Q----SLCGEDLIIKGISVHIS 79 (89)
T ss_dssp H----HHTTCEEEETTEEEEEE
T ss_pred H----HHcCCCcccCCEEEEEE
Confidence 4 56787765567655444
No 166
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.48 E-value=3.5e-07 Score=70.76 Aligned_cols=72 Identities=21% Similarity=0.318 Sum_probs=58.7
Q ss_pred CeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHH
Q 019393 182 DTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNT 261 (341)
Q Consensus 182 DTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kA 261 (341)
-||||.|| .+ +++.|+.+|++||+|.+|.|+ . ..|+ |||+|....+..+|
T Consensus 16 ~~l~V~n~--~~----------t~~~l~~~F~~~G~i~~v~i~------~---------~~g~---afV~f~~~~~a~~A 65 (97)
T 1x5p_A 16 NTLYVYGE--DM----------TPTLLRGAFSPFGNIIDLSMD------P---------PRNC---AFVTYEKMESADQA 65 (97)
T ss_dssp SEEEEECS--SC----------CHHHHHHHHTTTSCEEEEEEE------T---------TTTE---EEEEESSHHHHHHH
T ss_pred CEEEEcCC--CC----------CHHHHHHHHhhCCCEEEEEec------C---------CCCE---EEEEECCHHHHHHH
Confidence 48999995 22 788999999999999999994 1 1266 99999999999999
Q ss_pred HHHhcCccceecCceeEEEEEEeecccC
Q 019393 262 LKVLCGRSMQKQGSQLKADYEVTWDKDG 289 (341)
Q Consensus 262 M~aLrGmKL~~kGk~l~a~ikV~fD~tk 289 (341)
|++|.|..+ .|+. |+|.|-+.+
T Consensus 66 i~~l~g~~~--~g~~----l~v~~a~~~ 87 (97)
T 1x5p_A 66 VAELNGTQV--ESVQ----LKVNIARKQ 87 (97)
T ss_dssp HHHTTTEEE--TTEE----EEEECCSSC
T ss_pred HHHhCCCeE--CCeE----EEEEECCCC
Confidence 999999988 6765 456665544
No 167
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=98.46 E-value=4.1e-07 Score=75.62 Aligned_cols=72 Identities=19% Similarity=0.248 Sum_probs=59.1
Q ss_pred CCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHH
Q 019393 180 EPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFY 259 (341)
Q Consensus 180 RPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~ 259 (341)
..-+|+|.|||..+ +++.|+.+|++||.|+.+ +..+. ..|. |||+|....+..
T Consensus 98 ~~~~l~v~nlp~~~----------t~~~l~~~F~~~g~v~~~-----~~~~~---------~~g~---afV~f~~~~~A~ 150 (175)
T 1fje_B 98 AARTLLAKNLSFNI----------TEDELKEVFEDALEIRLV-----SQDGK---------SKGI---AYIEFKSEADAE 150 (175)
T ss_dssp GGGEEEEESCCSSC----------CHHHHHHHCTTCSEEEEE-----CSSSS---------CCSE---EEEECSSHHHHH
T ss_pred cCCEEEEeCCCCCC----------CHHHHHHHHHhcCeEEEe-----cCCCC---------CceE---EEEEECCHHHHH
Confidence 45699999999887 889999999999999877 22222 2366 999999999999
Q ss_pred HHHHHhcCccceecCceeEEE
Q 019393 260 NTLKVLCGRSMQKQGSQLKAD 280 (341)
Q Consensus 260 kAM~aLrGmKL~~kGk~l~a~ 280 (341)
+|+++|.|..+ .|+.+.+.
T Consensus 151 ~A~~~l~g~~~--~g~~i~v~ 169 (175)
T 1fje_B 151 KNLEEKQGAEI--DGRSVSLY 169 (175)
T ss_dssp HHHHHHTEEEE--TTEEEEEE
T ss_pred HHHHHhCCCEE--CCeEEEEE
Confidence 99999999888 78765443
No 168
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.45 E-value=2e-07 Score=71.73 Aligned_cols=72 Identities=18% Similarity=0.314 Sum_probs=57.7
Q ss_pred CCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHH
Q 019393 179 QEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDF 258 (341)
Q Consensus 179 eRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F 258 (341)
+..-||||.|||..+ +++.|+.+|++||+|.+| +.+...+. + |||+|....+.
T Consensus 6 ~~~~~l~V~nl~~~~----------t~~~l~~~F~~~G~v~~v--~~~~~~g~------------~---afV~f~~~~~a 58 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGV----------DSAQLSEYFLAFGPVASV--VMDKDKGV------------F---AIVEMGDVGAR 58 (94)
T ss_dssp TTCCEEEEECCCTTC----------CHHHHHHHGGGTSCEEEE--EECSSSCC------------E---EEEEESSHHHH
T ss_pred CCCCEEEEECCCCCC----------CHHHHHHHHHhcCCeEEE--EEcCCCCc------------E---EEEEECCHHHH
Confidence 344599999999887 899999999999999986 32211111 3 99999999999
Q ss_pred HHHHHHhcCccceecCceeEEE
Q 019393 259 YNTLKVLCGRSMQKQGSQLKAD 280 (341)
Q Consensus 259 ~kAM~aLrGmKL~~kGk~l~a~ 280 (341)
.+|++ |.|..+ .|+.+.++
T Consensus 59 ~~ai~-l~g~~~--~g~~l~V~ 77 (94)
T 2e5g_A 59 EAVLS-QSQHSL--GGHRLRVR 77 (94)
T ss_dssp HHHHT-CSCCEE--TTEECCCB
T ss_pred HHHHh-cCCeEE--CCEEEEEE
Confidence 99999 999888 78766553
No 169
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=98.45 E-value=1e-06 Score=79.16 Aligned_cols=114 Identities=16% Similarity=0.163 Sum_probs=82.6
Q ss_pred HHHhhccCeeEEecCccceeEEEcccCCCchhhhhcHHHHhhccCCCCCCCCCCCCeEEEcCCccccccCCCCCCCCcHH
Q 019393 127 YIVEKMDGIELNLEGVKYKLSVVIPIADDFEKMRKDWEEFYAFGNRGYSRGKQEPDTIVIKGVPSRWFAEPRVSSKPSML 206 (341)
Q Consensus 127 ~l~~kLdG~~lkLsGf~~~LkV~a~es~dFp~~rhdWesff~d~~~~~~~~geRPDTI~l~gLP~rWFa~~~~s~kPSE~ 206 (341)
..++.|+|..| .| ..|+|..+.....+ .......||+|.|||-.| -+++
T Consensus 152 ~A~~~l~~~~~--~g--~~i~v~~a~~~~~~------------------~~~~~~~~l~v~nlp~~~---------~~~~ 200 (284)
T 3smz_A 152 RAKSDLLGKPL--GP--RTLYVHWTDAGQLT------------------PALLHSRCLCVDRLPPGF---------NDVD 200 (284)
T ss_dssp HHHHHHTTCEE--TT--EECEEEECCGGGCC------------------TTTTSCSEEEEECCCTTC---------CCHH
T ss_pred HHHHHhCCCEe--CC--cEEEEEECCCCCCC------------------cccCCccEEEEecCCccc---------CCHH
Confidence 55678999766 44 35666544421100 113456799999999775 1688
Q ss_pred HHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHHHHhcCccceecCceeEEEEEEeec
Q 019393 207 VTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTLKVLCGRSMQKQGSQLKADYEVTWD 286 (341)
Q Consensus 207 vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM~aLrGmKL~~kGk~l~a~ikV~fD 286 (341)
.|+.+|+.||.|..|.|+.+. .+. ..|. |||+|....+..+|+.+|.|..+ .|+. |+|.|-
T Consensus 201 ~l~~~f~~~G~i~~v~i~~~~-~g~---------~~g~---afV~f~~~~~A~~A~~~l~g~~~--~g~~----l~v~~a 261 (284)
T 3smz_A 201 ALCRALSAVHSPTFCQLACGQ-DGQ---------LKGF---AVLEYETAEMAEEAQQQADGLSL--GGSH----LRVSFC 261 (284)
T ss_dssp HHHHHTCSSSCCSEEEEEECS-SCC---------EEEE---EEEECSSHHHHHHHHHHHTTCEE--TTEE----CEEEEC
T ss_pred HHHHHhhCCCCeEEEEEEECC-CCC---------cccE---EEEEeCCHHHHHHHHHHhCCCcc--CCeE----EEEEEe
Confidence 999999999999999998763 332 2256 99999999999999999999999 8874 555665
Q ss_pred ccCC
Q 019393 287 KDGF 290 (341)
Q Consensus 287 ~tkh 290 (341)
+.+.
T Consensus 262 ~~~~ 265 (284)
T 3smz_A 262 APGP 265 (284)
T ss_dssp CSSS
T ss_pred cCCC
Confidence 5443
No 170
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.45 E-value=1.3e-06 Score=77.19 Aligned_cols=71 Identities=15% Similarity=0.281 Sum_probs=60.0
Q ss_pred CCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccC-ceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHH
Q 019393 181 PDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFG-KIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFY 259 (341)
Q Consensus 181 PDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FG-kIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~ 259 (341)
..||+|.|||..+ +++.|+.+|++|| +|..|.|...+ .|. |||+|....+..
T Consensus 151 ~~~l~V~nlp~~~----------t~~~l~~~f~~~G~~i~~v~i~~~~--------------~g~---afV~f~~~~~A~ 203 (229)
T 2adc_A 151 SATLHLSNIPPSV----------SEEDLKVLFSSNGGVVKGFKFFQKD--------------RKM---ALIQMGSVEEAV 203 (229)
T ss_dssp CSEEEEECCCTTC----------CHHHHHHHHHTTSCCEEEEEECSSS--------------TTC---EEEEESSHHHHH
T ss_pred CCEEEEeCCCccC----------CHHHHHHHHHHcCCCeeEEEEEECC--------------CcE---EEEEECCHHHHH
Confidence 3789999999887 8899999999999 99999993211 155 999999999999
Q ss_pred HHHHHhcCccceec-CceeEEE
Q 019393 260 NTLKVLCGRSMQKQ-GSQLKAD 280 (341)
Q Consensus 260 kAM~aLrGmKL~~k-Gk~l~a~ 280 (341)
+|++.|.|..+ . |+.+.+.
T Consensus 204 ~Ai~~l~g~~~--~~g~~l~v~ 223 (229)
T 2adc_A 204 QALIDLHNHDL--GENHHLRVS 223 (229)
T ss_dssp HHHHHHTTCBS--SSSCBCEEE
T ss_pred HHHHHHCCCcc--CCCCeEEEE
Confidence 99999999998 5 7765443
No 171
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.44 E-value=3.8e-07 Score=72.40 Aligned_cols=77 Identities=16% Similarity=0.222 Sum_probs=62.3
Q ss_pred CCCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchH
Q 019393 178 KQEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRD 257 (341)
Q Consensus 178 geRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~ 257 (341)
...+-||+|.|||... +|+-|+.+|+.||.| .|.|+.+. .++ ..|+ |||+|....+
T Consensus 12 ~~~~~~l~V~nLp~~~----------te~~l~~~F~~~G~~-~v~i~~d~-~g~---------~~G~---afV~F~~~~~ 67 (102)
T 1wez_A 12 STTGHCVHMRGLPYRA----------TENDIYNFFSPLNPM-RVHIEIGP-DGR---------VTGE---ADVEFATHED 67 (102)
T ss_dssp CSSSCEEEEESCCTTC----------CHHHHHHSSCSCCCS-EEEEEESS-SSC---------EEEE---EEEECSSSHH
T ss_pred CCCCCEEEEeCCCCCC----------CHHHHHHHHHHcCce-EEEEEECC-CCC---------EeeE---EEEEECCHHH
Confidence 3556799999999887 899999999999966 99998864 433 2367 9999999999
Q ss_pred HHHHHHHhcCccceecCceeEEEE
Q 019393 258 FYNTLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 258 F~kAM~aLrGmKL~~kGk~l~a~i 281 (341)
..+|| .+.|..| .|+.+.+.+
T Consensus 68 a~~Al-~~~~~~~--~gr~i~V~~ 88 (102)
T 1wez_A 68 AVAAM-AKDKANM--QHRYVELFL 88 (102)
T ss_dssp HHHHH-TTSSCCS--SSSCCEEEE
T ss_pred HHHHH-HhCCCeE--CCcEEEEEE
Confidence 99999 5788777 788655543
No 172
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=98.43 E-value=4.4e-07 Score=74.46 Aligned_cols=61 Identities=20% Similarity=0.334 Sum_probs=53.2
Q ss_pred CeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHH
Q 019393 182 DTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNT 261 (341)
Q Consensus 182 DTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kA 261 (341)
-||||.|||..+ +++.|+.+|+.||+|..|.|+.+...+.. .|+ |||+|..-.+..+|
T Consensus 4 ~~l~v~nLp~~~----------t~~~l~~~F~~~G~i~~v~i~~~~~~g~~---------~g~---afV~f~~~~~a~~A 61 (167)
T 2cjk_A 4 CKMFIGGLNWDT----------TEDNLREYFGKYGTVTDLKIMKDPATGRS---------RGF---GFLSFEKPSSVDEV 61 (167)
T ss_dssp GEEEECSCCTTC----------CHHHHHHHHTTTCCEEEEECCCCTTTSSC---------CSC---EEEEESSTHHHHHH
T ss_pred cEEEEeCCCCCC----------CHHHHHHHHHhCCCEEEEEEEECCCCCCc---------cce---EEEEEccHHHHHHH
Confidence 489999999988 89999999999999999999876444432 377 99999999999999
Q ss_pred HHH
Q 019393 262 LKV 264 (341)
Q Consensus 262 M~a 264 (341)
|+.
T Consensus 62 ~~~ 64 (167)
T 2cjk_A 62 VKT 64 (167)
T ss_dssp HHS
T ss_pred Hhc
Confidence 996
No 173
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.41 E-value=5e-07 Score=69.98 Aligned_cols=80 Identities=18% Similarity=0.315 Sum_probs=60.6
Q ss_pred CCCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchH
Q 019393 178 KQEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRD 257 (341)
Q Consensus 178 geRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~ 257 (341)
....-||||.|||..+ +++.|+.+|+.|+.| .|+.+...++ ..|+ |||+|....+
T Consensus 12 ~~~~~~l~V~nLp~~~----------t~~~l~~~F~~~~~~---~~~~~~~~~~---------~~g~---afV~f~~~~~ 66 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDT----------TEETLKESFDGSVRA---RIVTDRETGS---------SKGF---GFVDFNSEED 66 (102)
T ss_dssp SCCCSSEEEECCCTTC----------CHHHHHHTSTTCSEE---EEEECSSSCS---------EEEE---EEEECSSHHH
T ss_pred CCCCCEEEEeCCCCcc----------CHHHHHHHhcCCeEE---EEEecCCCCC---------cCcE---EEEEECCHHH
Confidence 3445699999999888 889999999988654 4544422222 2366 9999999999
Q ss_pred HHHHHHHhcCccceecCceeEEEEEEeeccc
Q 019393 258 FYNTLKVLCGRSMQKQGSQLKADYEVTWDKD 288 (341)
Q Consensus 258 F~kAM~aLrGmKL~~kGk~l~a~ikV~fD~t 288 (341)
..+||+.|.|..| .|+. |+|.|-+.
T Consensus 67 A~~A~~~l~g~~~--~g~~----l~V~~a~~ 91 (102)
T 2fc8_A 67 AKAAKEAMEDGEI--DGNK----VTLDWAKP 91 (102)
T ss_dssp HHHHHHHHTTCEE--TTEE----CEEEECCC
T ss_pred HHHHHHHhCCCeE--CCeE----EEEEEecC
Confidence 9999999999988 7765 45555543
No 174
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.40 E-value=6.4e-07 Score=76.24 Aligned_cols=71 Identities=11% Similarity=0.274 Sum_probs=62.0
Q ss_pred CeEEEcCCcc-ccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHH
Q 019393 182 DTIVIKGVPS-RWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYN 260 (341)
Q Consensus 182 DTI~l~gLP~-rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~k 260 (341)
-||+|.|||. .+ +++.|+.+|+.||.|..|.|+.+. .|+ |||+|....+..+
T Consensus 4 ~~l~v~nlp~~~~----------~~~~l~~~F~~~G~i~~v~i~~~~--------------~g~---afV~f~~~~~a~~ 56 (198)
T 1qm9_A 4 SVLLVSNLNPERV----------TPQSLFILFGVYGDVQRVKILFNK--------------KEN---ALVQMADGNQAQL 56 (198)
T ss_dssp CEEEEECCCSSSC----------CHHHHHHHHHTTCCCSEEECSTTC--------------SSC---CEEECTTTHHHHH
T ss_pred cEEEEeCCCcccC----------CHHHHHHHHHhcCCEEEEEEEeCC--------------CCE---EEEEECCHHHHHH
Confidence 3899999998 77 889999999999999999998753 155 9999999999999
Q ss_pred HHHHhcCccceecCceeEEEE
Q 019393 261 TLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 261 AM~aLrGmKL~~kGk~l~a~i 281 (341)
||+.|.|..+ .|+.+.+.+
T Consensus 57 A~~~l~~~~~--~g~~l~v~~ 75 (198)
T 1qm9_A 57 AMSHLNGHKL--HGKPIRITL 75 (198)
T ss_dssp HHHHHTTCCC--SSCCCEEEE
T ss_pred HHHHhCCCee--cCeEEEEEE
Confidence 9999999988 787665544
No 175
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=98.39 E-value=6.9e-07 Score=80.36 Aligned_cols=75 Identities=12% Similarity=0.207 Sum_probs=63.7
Q ss_pred CeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHH
Q 019393 182 DTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNT 261 (341)
Q Consensus 182 DTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kA 261 (341)
.||+|.|||..+ +++.|+.+|+.||.|..+.|+.+...+. ..|+ |||+|....+..+|
T Consensus 96 ~~l~v~nlp~~~----------t~~~l~~~f~~~G~i~~~~i~~~~~~g~---------~~g~---afV~f~~~~~a~~A 153 (284)
T 3smz_A 96 ALLCVANLPPSL----------TQQQFEELVRPFGSLERCFLVYSERTGQ---------SKGY---GFAEYMKKDSAARA 153 (284)
T ss_dssp CEEEEESCCTTC----------CHHHHHHHHGGGSCEEEEEEEECTTTCC---------EEEE---EEEEESSHHHHHHH
T ss_pred CEEEEcCCCCcC----------CHHHHHHHHHhcCCeeEEEEEeeCCCCc---------cceE---EEEEECCHHHHHHH
Confidence 499999999888 8999999999999999999987755443 2366 99999999999999
Q ss_pred HHHhcCccceecCceeEEE
Q 019393 262 LKVLCGRSMQKQGSQLKAD 280 (341)
Q Consensus 262 M~aLrGmKL~~kGk~l~a~ 280 (341)
|+.|.|..+ .|+.+.+.
T Consensus 154 ~~~l~~~~~--~g~~i~v~ 170 (284)
T 3smz_A 154 KSDLLGKPL--GPRTLYVH 170 (284)
T ss_dssp HHHHTTCEE--TTEECEEE
T ss_pred HHHhCCCEe--CCcEEEEE
Confidence 999999887 77755443
No 176
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=98.39 E-value=3e-07 Score=80.98 Aligned_cols=80 Identities=14% Similarity=0.194 Sum_probs=63.9
Q ss_pred eEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHH
Q 019393 183 TIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTL 262 (341)
Q Consensus 183 TI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM 262 (341)
||||.|||... +++.|+.+|++||+|.+|.||.+. .+. ..|+ |||+|+...+..+|+
T Consensus 111 ~l~V~nLp~~~----------t~~~L~~~F~~~G~v~~v~i~~~~-~~~---------~kG~---aFVeF~~~e~A~~A~ 167 (193)
T 2voo_A 111 SVYIKGFPTDA----------TLDDIKEWLEDKGQVLNIQMRRTL-HKA---------FKGS---IFVVFDSIESAKKFV 167 (193)
T ss_dssp EEEEECCCTTC----------CHHHHHHHHTTSCCEEEEEEEECT-TCC---------EEEE---EEEEESSHHHHHHHH
T ss_pred EEEecCCCCcC----------CHHHHHHHHhcCCCEEEEEEEECC-CCC---------cccE---EEEEECCHHHHHHHH
Confidence 89999999765 889999999999999999999752 121 3477 999999999999999
Q ss_pred HHhcCccceecCceeEEEEEEeeccc
Q 019393 263 KVLCGRSMQKQGSQLKADYEVTWDKD 288 (341)
Q Consensus 263 ~aLrGmKL~~kGk~l~a~ikV~fD~t 288 (341)
+.+. . ..+|+.+.+..+-+|...
T Consensus 168 ~~~~-~--~~~Gr~l~V~~~~~y~~~ 190 (193)
T 2voo_A 168 ETPG-Q--KYKETDLLILFKDDYFAK 190 (193)
T ss_dssp HCTT-C--EETTEECEEEETTTC---
T ss_pred HhCC-C--eECCEEEEEEEhHHHHHH
Confidence 8764 3 448999888877766554
No 177
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.38 E-value=1.1e-06 Score=71.52 Aligned_cols=71 Identities=15% Similarity=0.220 Sum_probs=59.8
Q ss_pred CeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHH
Q 019393 182 DTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNT 261 (341)
Q Consensus 182 DTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kA 261 (341)
-+|+|.|||... +|+-|+..|+.| +|..|.|+.+.. ++. .|+ |||+|....+..+|
T Consensus 17 ~~v~V~nLp~~~----------te~dl~~~F~~~-~v~~v~i~~d~~-g~~---------~G~---afV~F~~~~~a~~A 72 (109)
T 2dnn_A 17 LYVSVHGMPFSA----------MENDVRDFFHGL-RVDAVHLLKDHV-GRN---------NGN---GLVKFLSPQDTFEA 72 (109)
T ss_dssp HEEEEECCCSSC----------CHHHHHHHTTTS-CCCEEEECCCTT-CCC---------CSE---EEEECSSHHHHHHH
T ss_pred CEEEEeCCCCCC----------CHHHHHHHhccC-CeeEEEEEECCC-CCC---------CeE---EEEEECCHHHHHHH
Confidence 489999999888 899999999999 899999998632 442 377 99999999999999
Q ss_pred HHHhcCccceecCceeEE
Q 019393 262 LKVLCGRSMQKQGSQLKA 279 (341)
Q Consensus 262 M~aLrGmKL~~kGk~l~a 279 (341)
| .|.|..| .|+.+.+
T Consensus 73 l-~~~~~~~--~gr~i~V 87 (109)
T 2dnn_A 73 L-KRNRMLM--IQRYVEV 87 (109)
T ss_dssp H-HTTTEEE--TTEEEEE
T ss_pred H-hcCCCeE--CCeEEEE
Confidence 9 6888877 7875433
No 178
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=98.38 E-value=4.5e-07 Score=76.63 Aligned_cols=77 Identities=18% Similarity=0.162 Sum_probs=64.7
Q ss_pred CCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCc---eeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccc
Q 019393 179 QEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGK---IRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKY 255 (341)
Q Consensus 179 eRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGk---IRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey 255 (341)
...-||+|.|||... +|+-|+..|+.||. |..|.|+.+.. ++. .|+ |||+|...
T Consensus 42 ~~~~~lfVgnLp~~~----------te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~s---------rG~---aFV~F~~~ 98 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSC----------SVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQ---------SGE---AFVELGSE 98 (136)
T ss_dssp CTTCEEEEESCCTTC----------CHHHHHHHTTTCCCSSSSTTEEEEECSS-SCE---------EEE---EEEECSSH
T ss_pred CCCCEEEEeCCCCCC----------CHHHHHHHHHHhCCcCceeEEEEEECCC-CCC---------CeE---EEEEECCH
Confidence 445689999999887 89999999999999 89999988643 543 377 99999999
Q ss_pred hHHHHHHHHhcCccceecCceeEEEE
Q 019393 256 RDFYNTLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 256 ~~F~kAM~aLrGmKL~~kGk~l~a~i 281 (341)
.+..+||+ |.|..| .|+.+.+..
T Consensus 99 e~a~~Al~-~~g~~l--~gr~i~V~~ 121 (136)
T 2hgl_A 99 DDVKMALK-KDRESM--GHRYIEVFK 121 (136)
T ss_dssp HHHHHHHT-TTEEES--SSSEEEEEE
T ss_pred HHHHHHHh-cCCCEE--CCEEEEEEE
Confidence 99999999 999888 788655443
No 179
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.37 E-value=8e-07 Score=78.58 Aligned_cols=71 Identities=11% Similarity=0.274 Sum_probs=62.0
Q ss_pred CeEEEcCCcc-ccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHH
Q 019393 182 DTIVIKGVPS-RWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYN 260 (341)
Q Consensus 182 DTI~l~gLP~-rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~k 260 (341)
-||+|.|||. .+ +++.|+.+|+.||.|..|.|+.+. .|+ |||+|....+..+
T Consensus 35 ~~l~V~nLp~~~~----------te~~L~~~F~~~G~i~~v~i~~~~--------------~g~---afV~F~~~~~A~~ 87 (229)
T 2adc_A 35 SVLLVSNLNPERV----------TPQSLFILFGVYGDVQRVKILFNK--------------KEN---ALVQMADGNQAQL 87 (229)
T ss_dssp SEEEEESCCTTTC----------CHHHHHHHHHHHTCEEEEEECCTT--------------SCC---EEEEESCHHHHHH
T ss_pred CEEEEeCCCcccC----------CHHHHHHHHHhCCCeEEEEEEECC--------------CCE---EEEEECCHHHHHH
Confidence 4899999998 77 889999999999999999998753 155 9999999999999
Q ss_pred HHHHhcCccceecCceeEEEE
Q 019393 261 TLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 261 AM~aLrGmKL~~kGk~l~a~i 281 (341)
||+.|.|..+ .|+.+.+.+
T Consensus 88 Ai~~l~g~~~--~g~~l~v~~ 106 (229)
T 2adc_A 88 AMSHLNGHKL--HGKPIRITL 106 (229)
T ss_dssp HHHHHTTCBC--SSSBCEEEC
T ss_pred HHHHhCCCeE--CCeEEEEEE
Confidence 9999999988 787665543
No 180
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.36 E-value=8e-07 Score=72.75 Aligned_cols=66 Identities=11% Similarity=0.188 Sum_probs=55.5
Q ss_pred Ce-EEEcCCccccccCCCCCCCCcHHH----HHHHhhcc-CceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccc
Q 019393 182 DT-IVIKGVPSRWFAEPRVSSKPSMLV----THTVFSTF-GKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKY 255 (341)
Q Consensus 182 DT-I~l~gLP~rWFa~~~~s~kPSE~v----l~~vFe~F-GkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey 255 (341)
+| |||.|||.++ .++. |+++|+.| |+|-.|- .|. |||+|.+-
T Consensus 9 ~T~lYV~NL~~~~----------~~~~lk~~L~~lF~~yGG~Vl~Vt-------------------gG~---AfV~F~~~ 56 (96)
T 2diu_A 9 HTLLYVYNLPANK----------DGKSVSNRLRRLSDNCGGKVLSIT-------------------GCS---AILRFINQ 56 (96)
T ss_dssp SEEEEEESCCTTS----------CHHHHHHHHHHHHHTTTCCEEECC-------------------TTC---EEEEESSH
T ss_pred ceEEEEeCCCCcC----------CHHHHHHHHHHHHHHcCCeeEEEe-------------------cCE---EEEEECCH
Confidence 56 9999999999 5655 66999999 5998880 166 99999999
Q ss_pred hHHHHHHHHhcCccceecCceeEEEE
Q 019393 256 RDFYNTLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 256 ~~F~kAM~aLrGmKL~~kGk~l~a~i 281 (341)
.+..+|++.|.|..| .||.+.+++
T Consensus 57 esA~~A~~~l~G~~l--~gr~i~v~~ 80 (96)
T 2diu_A 57 DSAERAQKRMENEDV--FGNRIIVSF 80 (96)
T ss_dssp HHHHHHHHHHTTCCS--SSSCCEEES
T ss_pred HHHHHHHHHhcCCcc--CCceEEEEe
Confidence 999999999999999 788765543
No 181
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=98.35 E-value=1.1e-06 Score=78.98 Aligned_cols=71 Identities=13% Similarity=0.295 Sum_probs=60.4
Q ss_pred CeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHH
Q 019393 182 DTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNT 261 (341)
Q Consensus 182 DTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kA 261 (341)
-||||.|||-.+ +++.|+.+|++||.|..|.|+... .|+ |||+|....+..+|
T Consensus 208 ~~l~v~nl~~~~----------~~~~l~~~F~~~G~i~~v~~~~~~--------------~g~---afV~f~~~~~A~~A 260 (282)
T 3pgw_A 208 HILFLTNLPEET----------NELMLSMLFNQFPGFKEVRLVPGR--------------HDI---AFVEFDNEVQAGAA 260 (282)
T ss_pred CEEEEeCCCCcC----------CHHHHHHHHHhcCCeEEEEEecCC--------------CcE---EEEEeCCHHHHHHH
Confidence 579999999877 899999999999999999998322 155 99999999999999
Q ss_pred HHHhcCccceec-CceeEEEE
Q 019393 262 LKVLCGRSMQKQ-GSQLKADY 281 (341)
Q Consensus 262 M~aLrGmKL~~k-Gk~l~a~i 281 (341)
+++|.|..+ . |+.+.+.+
T Consensus 261 ~~~l~g~~~--~~g~~l~v~~ 279 (282)
T 3pgw_A 261 RDALQGFKI--TQNNAMKISF 279 (282)
T ss_pred HHHcCCcEe--CCCCEEEEEE
Confidence 999999888 5 76555443
No 182
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=98.34 E-value=1.2e-06 Score=71.75 Aligned_cols=68 Identities=24% Similarity=0.352 Sum_probs=56.9
Q ss_pred CeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHH
Q 019393 182 DTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNT 261 (341)
Q Consensus 182 DTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kA 261 (341)
-||||.||+ + +++.|+.+|++||+|..|.|+ . ..|+ |||+|....+..+|
T Consensus 40 ~~lfVgnl~--~----------te~~L~~~F~~~G~I~~v~i~------~---------~kg~---aFV~f~~~~~A~~A 89 (121)
T 2bz2_A 40 NTLYVYGED--M----------TPTLLRGAFSPFGNIIDLSMD------P---------PRNC---AFVTYEKMESADQA 89 (121)
T ss_dssp CEEEEECSS--C----------CHHHHHHHHSTTCCCSCEEEE------T---------TTTE---EEEECSSHHHHHHH
T ss_pred CEEEEcCCC--C----------CHHHHHHHHHccCCEEEEEEe------C---------CCCE---EEEEECCHHHHHHH
Confidence 489999952 2 788999999999999999996 1 1266 99999999999999
Q ss_pred HHHhcCccceecCceeEEEE
Q 019393 262 LKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 262 M~aLrGmKL~~kGk~l~a~i 281 (341)
+++|.|..+ .|+.+.+++
T Consensus 90 i~~lng~~~--~g~~l~V~~ 107 (121)
T 2bz2_A 90 VAELNGTQV--ESVQLKVNI 107 (121)
T ss_dssp HHHHTTCBC--SSCBCEEEE
T ss_pred HHHhCCCEE--CCeEEEEEE
Confidence 999999988 787665443
No 183
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.33 E-value=7.5e-07 Score=73.70 Aligned_cols=83 Identities=16% Similarity=0.235 Sum_probs=64.5
Q ss_pred CeEEEcCC--ccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHH
Q 019393 182 DTIVIKGV--PSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFY 259 (341)
Q Consensus 182 DTI~l~gL--P~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~ 259 (341)
-+|+|.|| |-.|.. --++-|+..|++||+|.+|.||.+.+.... ...+.|. +||+|..-.+..
T Consensus 21 ~vl~L~Nm~~~~el~d-------dleedl~eef~k~G~V~~v~I~~~~~~~~~-----~~~~~G~---~FV~F~~~e~A~ 85 (118)
T 3ue2_A 21 TVMVLRNMVDPKDIDD-------DLEGEVTEECGKFGAVNRVIIYQEKQGEEE-----DAEIIVK---IFVEFSIASETH 85 (118)
T ss_dssp CEEEEESCSCGGGCCT-------THHHHHHHHHTTTSCEEEEEEEEEEESSST-----TCEEEEE---EEEEESSHHHHH
T ss_pred CEEEEECCCCHHHHHH-------HHHHHHHHHHhccCCEeEEEEeecCCCccc-----CCcceEE---EEEEECCHHHHH
Confidence 48999998 444421 156789999999999999999986432100 0123366 999999999999
Q ss_pred HHHHHhcCccceecCceeEEEE
Q 019393 260 NTLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 260 kAM~aLrGmKL~~kGk~l~a~i 281 (341)
+|+++|.|+.+ .|+.+.|++
T Consensus 86 ~Ai~~LnGr~f--~GR~i~v~~ 105 (118)
T 3ue2_A 86 KAIQALNGRWF--AGRKVVAEV 105 (118)
T ss_dssp HHHHHHTTCEE--TTEECEEEE
T ss_pred HHHHHHCCCEE--CCcEEEEEE
Confidence 99999999988 999999887
No 184
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.32 E-value=9.5e-07 Score=70.63 Aligned_cols=76 Identities=26% Similarity=0.366 Sum_probs=59.1
Q ss_pred CeEEEcCC--ccccccCCCCCCCC-----cHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEecc
Q 019393 182 DTIVIKGV--PSRWFAEPRVSSKP-----SMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEK 254 (341)
Q Consensus 182 DTI~l~gL--P~rWFa~~~~s~kP-----SE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~e 254 (341)
-||+|.+| |..+- +.| .++.|+..|++||+|..|.|+ |.. ..|+ |||+|..
T Consensus 16 ~~l~l~Nl~~~~~~~------~~~~~~~~~e~~l~~~f~~~G~v~~v~i~--~~~-----------~~G~---afV~f~~ 73 (112)
T 2dit_A 16 RVVIIKNMFHPMDFE------DDPLVLNEIREDLRVECSKFGQIRKLLLF--DRH-----------PDGV---ASVSFRD 73 (112)
T ss_dssp CEEEEESSCCTTHHH------HCSHHHHHHHHHHHHHGGGTSCCSEEEEE--TTC-----------TTCE---EEEECSC
T ss_pred eEEEEEcCCCHHHhc------cCHHHHHHHHHHHHHHHHccCCEeEEEEe--cCC-----------CCEE---EEEEECC
Confidence 48999999 33321 111 267899999999999999874 221 1377 9999999
Q ss_pred chHHHHHHHHhcCccceecCceeEEEE
Q 019393 255 YRDFYNTLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 255 y~~F~kAM~aLrGmKL~~kGk~l~a~i 281 (341)
..+..+||+.|.|..+ .|+.+.|++
T Consensus 74 ~~~A~~Ai~~lng~~~--~gr~l~v~~ 98 (112)
T 2dit_A 74 PEEADYCIQTLDGRWF--GGRQITAQA 98 (112)
T ss_dssp HHHHHHHHHHSTTCEE--TTEECEEEE
T ss_pred HHHHHHHHHHcCCCEE--CCcEEEEEE
Confidence 9999999999999988 788877665
No 185
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=98.32 E-value=1.7e-06 Score=77.75 Aligned_cols=75 Identities=23% Similarity=0.358 Sum_probs=61.1
Q ss_pred CCeEEEcCCccccccCCCCCCCCcHHHHH----HHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccch
Q 019393 181 PDTIVIKGVPSRWFAEPRVSSKPSMLVTH----TVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYR 256 (341)
Q Consensus 181 PDTI~l~gLP~rWFa~~~~s~kPSE~vl~----~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~ 256 (341)
--||||.|||..+ +++.|+ .+|++||.|..|.|+.. ++ ..|+ |||+|....
T Consensus 9 ~~~l~V~nlp~~~----------~~~~l~~~L~~~F~~~G~i~~v~~~~~---~~---------~~g~---afV~f~~~~ 63 (282)
T 3pgw_A 9 NHTIYINNLNEKI----------KKDELKKSLYAIFSQFGQILDILVSRS---LK---------MRGQ---AFVIFKEVS 63 (282)
T ss_pred CCEEEEeCCCCCC----------CHHHHHHHHHHHHhccCCeEEEEEcCC---CC---------cceE---EEEEECCHH
Confidence 3499999999877 777755 89999999999998751 11 2366 999999999
Q ss_pred HHHHHHHHhcCccceecCceeEEEEE
Q 019393 257 DFYNTLKVLCGRSMQKQGSQLKADYE 282 (341)
Q Consensus 257 ~F~kAM~aLrGmKL~~kGk~l~a~ik 282 (341)
+..+|++.|.|..+ .|+.+.+.+-
T Consensus 64 ~a~~A~~~l~g~~~--~g~~l~v~~a 87 (282)
T 3pgw_A 64 SATNALRSMQGFPF--YDKPMRIQYA 87 (282)
T ss_pred HHHHHHHHhcCCee--CCcEEEEEEe
Confidence 99999999999888 7876665543
No 186
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.32 E-value=1.5e-06 Score=73.96 Aligned_cols=72 Identities=15% Similarity=0.301 Sum_probs=61.2
Q ss_pred CCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccC-ceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHH
Q 019393 181 PDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFG-KIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFY 259 (341)
Q Consensus 181 PDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FG-kIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~ 259 (341)
..||+|.|||..+ +++.|+.+|++|| +|..|.|...+ .|. |||+|....+..
T Consensus 120 ~~~l~v~nl~~~~----------~~~~l~~~f~~~G~~v~~v~i~~~~--------------~g~---afV~f~~~~~A~ 172 (198)
T 1qm9_A 120 SATLHLSNIPPSV----------SEEDLKVLFSSNGGVVKGFKFFQKD--------------RKM---ALIQMGSVEEAV 172 (198)
T ss_dssp CCEEEECCCCTTC----------CHHHHHHHHHHTTSCCCEEEESSTT--------------SSC---EEEECSSHHHHH
T ss_pred ccEEEEeCCCCCC----------CHHHHHHHHHHcCCCceEEEEEeCC--------------CcE---EEEEeCCHHHHH
Confidence 4689999999877 8899999999999 99999994321 155 999999999999
Q ss_pred HHHHHhcCccceec-CceeEEEE
Q 019393 260 NTLKVLCGRSMQKQ-GSQLKADY 281 (341)
Q Consensus 260 kAM~aLrGmKL~~k-Gk~l~a~i 281 (341)
+|+++|.|..+ . |+.+.+.+
T Consensus 173 ~A~~~l~g~~~--~~g~~l~v~~ 193 (198)
T 1qm9_A 173 QALIDLHNHDL--GENHHLRVSF 193 (198)
T ss_dssp HHHHHHTSSCC--SSCCSCCEEE
T ss_pred HHHHHhcCCcc--CCCCeEEEEe
Confidence 99999999998 6 77665554
No 187
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.31 E-value=1.5e-06 Score=69.92 Aligned_cols=65 Identities=18% Similarity=0.270 Sum_probs=53.9
Q ss_pred HHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHHHHhcCccceecCceeEEEE
Q 019393 205 MLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 205 E~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM~aLrGmKL~~kGk~l~a~i 281 (341)
++-|+..|++||+|.+|.||.+..-.. ....|. |||+|..-.+..+|+++|.|+.+ .|+.+.|.+
T Consensus 29 ~~dl~~~f~k~G~V~~v~i~~~~~~~~-------~~~~G~---~fV~f~~~~~A~~Ai~~lnG~~f--~GR~i~v~~ 93 (105)
T 3v4m_A 29 VEDVRDECSKYGLVKSIEIPRPVDGVE-------VPGCGK---IFVEFTSVFDCQKAMQGLTGRKF--ANRVVVTKY 93 (105)
T ss_dssp HHHHHHHHHTTSCEEEEECCCCBTTBC-------CTTTTE---EEEEESSHHHHHHHHHHHTTCEE--TTEECEEEE
T ss_pred HHHHHHHHHccCCEEEEEEeccCCCCC-------cCCcEE---EEEEECCHHHHHHHHHHhCCCEe--CCCEEEEEE
Confidence 467999999999999999997632211 113377 99999999999999999999998 999998876
No 188
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.30 E-value=1.2e-06 Score=78.94 Aligned_cols=92 Identities=16% Similarity=0.175 Sum_probs=73.7
Q ss_pred CeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHH
Q 019393 182 DTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNT 261 (341)
Q Consensus 182 DTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kA 261 (341)
-||+|.|||..+ +++.|+.+|+.||.|..|.|+.+ +.++ ..|+ |||+|....+..+|
T Consensus 97 ~~l~v~nl~~~~----------t~~~l~~~F~~~G~i~~v~i~~~-~~g~---------~~g~---afV~f~~~~~A~~A 153 (261)
T 3sde_A 97 AALTVKNLSPVV----------SNELLEQAFSQFGPVEKAVVVVD-DRGR---------ATGK---GFVEFAAKPPARKA 153 (261)
T ss_dssp SEEEEESCCTTC----------CHHHHHHHHGGGSCEEEEEEEEE-TTSC---------EEEE---EEEEESSHHHHHHH
T ss_pred CcccccCCCCCC----------CHHHHHHHHHhcCCeEEEEeeeC-CCCC---------cCcE---EEEEeCCHHHHHHH
Confidence 389999999877 88999999999999999999987 4433 2366 99999999999999
Q ss_pred HHHhcCcccee--cCceeEEEEEEeecccCCCccccc
Q 019393 262 LKVLCGRSMQK--QGSQLKADYEVTWDKDGFFWDSRN 296 (341)
Q Consensus 262 M~aLrGmKL~~--kGk~l~a~ikV~fD~tkhlS~~~i 296 (341)
++.|.|..+.. .|+.+.+..--..|....+.+..+
T Consensus 154 ~~~l~~~~~~~~~~~r~i~v~~~~~~~~~~~~~~~~~ 190 (261)
T 3sde_A 154 LERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLM 190 (261)
T ss_dssp HHHHHHSCEESSSSCCBCEEEECCCEESSSCCCGGGS
T ss_pred HHHhcCCeEEecCCCceEEEeeccccCccCCCcchhh
Confidence 99997766654 367777777666666666665544
No 189
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=98.29 E-value=1.1e-06 Score=77.89 Aligned_cols=67 Identities=13% Similarity=0.144 Sum_probs=57.3
Q ss_pred CeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCce--eeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHH
Q 019393 182 DTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKI--RNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFY 259 (341)
Q Consensus 182 DTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkI--RnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~ 259 (341)
-||||.|||..+ +++.|+.+|++||.| ..|.|..+. +. ..|. |||+|....+..
T Consensus 124 ~~l~v~NLp~~~----------t~~~L~~~F~~~G~v~~~~v~~~~~~--~~---------~~g~---gfV~f~~~~~A~ 179 (205)
T 3tyt_A 124 NVLHFFNAPLEV----------TEENFFEICDELGVKRPTSVKVFSGK--SE---------RSSS---GLLEWDSKSDAL 179 (205)
T ss_dssp SEEEEEEECTTC----------CHHHHHHHHHHHTCCCCSEEEECSCC--SS---------SSEE---EEEECSSHHHHH
T ss_pred ceEEEeCCCCCC----------CHHHHHHHHHhcCCcceEEEEEEcCC--CC---------CceE---EEEEeCCHHHHH
Confidence 489999999887 899999999999999 888887653 11 1256 999999999999
Q ss_pred HHHHHhcCcccee
Q 019393 260 NTLKVLCGRSMQK 272 (341)
Q Consensus 260 kAM~aLrGmKL~~ 272 (341)
+||.+|.|..|.-
T Consensus 180 ~Ai~~lng~~~~g 192 (205)
T 3tyt_A 180 ETLGFLNHYQMKN 192 (205)
T ss_dssp HHHHHHTTCEECC
T ss_pred HHHHHhCCCCccC
Confidence 9999999999943
No 190
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.29 E-value=1.7e-06 Score=65.55 Aligned_cols=76 Identities=12% Similarity=0.239 Sum_probs=57.6
Q ss_pred CCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHH
Q 019393 179 QEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDF 258 (341)
Q Consensus 179 eRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F 258 (341)
...-||||.|||..+ +++.|+.+|++||+|..|.|+.+ ..|+ |||+|....+.
T Consensus 3 ~~~~~l~V~nLp~~~----------te~~l~~~F~~~G~i~~v~i~~~--------------~~g~---afV~f~~~~~a 55 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDM----------TEDELREFFSQYGDVMDVFIPKP--------------FRAF---AFVTFADDQIA 55 (88)
T ss_dssp SCCCEEEEESCCSSS----------CHHHHHHHSTTTSCCCEEECCSS--------------CCSC---CEEECSCHHHH
T ss_pred CCCcEEEEeCCCCCC----------CHHHHHHHHHHcCCeeEEEEecC--------------CCCE---EEEEECCHHHH
Confidence 345699999999888 89999999999999999999853 1266 99999997765
Q ss_pred HHHHHHhcCccceecCceeEEEEEEeecccC
Q 019393 259 YNTLKVLCGRSMQKQGSQLKADYEVTWDKDG 289 (341)
Q Consensus 259 ~kAM~aLrGmKL~~kGk~l~a~ikV~fD~tk 289 (341)
. ++.|..+...|+. |+|.+.+.+
T Consensus 56 ~----~~~~~~~~~~g~~----l~v~~a~~~ 78 (88)
T 1wf0_A 56 Q----SLCGEDLIIKGIS----VHISNAEPK 78 (88)
T ss_dssp H----HTTTCEEEETTEE----EEEECCCCC
T ss_pred H----HHhcCCceeCCEE----EEEEecCCC
Confidence 3 4567666556644 455555443
No 191
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=98.29 E-value=6e-07 Score=76.23 Aligned_cols=74 Identities=15% Similarity=0.201 Sum_probs=60.3
Q ss_pred CCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHH
Q 019393 179 QEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDF 258 (341)
Q Consensus 179 eRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F 258 (341)
...-||+|.|||... +|+-|+..|+.|| |..|.|+.+.. ++. .|+ |||+|....+.
T Consensus 44 ~~~~~lfV~nLp~~~----------te~dL~~~F~~~G-i~~v~i~~d~~-g~s---------rGf---aFV~F~~~e~A 99 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKA----------TENDIYNFFSPLN-PVRVHIEIGPD-GRV---------TGE---ADVEFATHEEA 99 (139)
T ss_dssp -CCCCEECCSCCTTC----------CHHHHHHHHCSCC-CSEEECCCSSS-SCS---------SCC---CEEECSHHHHH
T ss_pred CCCCEEEEeCCCCCC----------CHHHHHHHHHhcC-CeEEEEEECCC-CCC---------ceE---EEEEeCCHHHH
Confidence 344599999999988 8999999999999 66999987633 442 377 99999999999
Q ss_pred HHHHHHhcCccceecCceeEE
Q 019393 259 YNTLKVLCGRSMQKQGSQLKA 279 (341)
Q Consensus 259 ~kAM~aLrGmKL~~kGk~l~a 279 (341)
.+|| .+.|..| .|+.+.+
T Consensus 100 ~~Al-~~~g~~l--~gR~i~V 117 (139)
T 2hgn_A 100 VAAM-SKDRANM--QHRYIEL 117 (139)
T ss_dssp HHHT-TCCSCSS--SSCCCCC
T ss_pred HHHH-hhCCCEE--CCEEEEE
Confidence 9999 8888777 7775443
No 192
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=98.23 E-value=2.4e-06 Score=77.12 Aligned_cols=76 Identities=9% Similarity=0.117 Sum_probs=61.3
Q ss_pred CCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccC-ceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHH
Q 019393 181 PDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFG-KIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFY 259 (341)
Q Consensus 181 PDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FG-kIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~ 259 (341)
.-||+|.|||..+ +++.|+.+|+.|| .|..|.|+.+.. +. ..|. |||+|....+..
T Consensus 117 ~~~l~v~nlp~~~----------t~~~l~~~f~~~G~~i~~v~i~~~~~-~~---------~~g~---afV~f~~~~~a~ 173 (292)
T 2ghp_A 117 ECTLWMTNFPPSY----------TQRNIRDLLQDINVVALSIRLPSLRF-NT---------SRRF---AYIDVTSKEDAR 173 (292)
T ss_dssp SCEEEEECCCTTC----------CHHHHHHHHHHTTCCCCEEECC-----------------CCE---EEEECSSHHHHH
T ss_pred CCEEEEECCCCCC----------CHHHHHHHHHHhCCCeEEEEEEeCCC-CC---------cceE---EEEEECCHHHHH
Confidence 4599999999988 8899999999999 999999987532 22 2366 999999999999
Q ss_pred HHHHHhcCccceecCceeEEEE
Q 019393 260 NTLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 260 kAM~aLrGmKL~~kGk~l~a~i 281 (341)
+||+.|.|..+ .|+.+.+.+
T Consensus 174 ~A~~~l~g~~~--~g~~l~v~~ 193 (292)
T 2ghp_A 174 YCVEKLNGLKI--EGYTLVTKV 193 (292)
T ss_dssp HHHHHHTTCEE--TTEECEEEE
T ss_pred HHHHHhCCCEe--CCcEEEEEE
Confidence 99999999998 786655543
No 193
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=98.20 E-value=1.9e-06 Score=74.50 Aligned_cols=83 Identities=13% Similarity=0.301 Sum_probs=68.1
Q ss_pred CCeEEEcCC----ccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEecc--
Q 019393 181 PDTIVIKGV----PSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEK-- 254 (341)
Q Consensus 181 PDTI~l~gL----P~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~e-- 254 (341)
|-.|||.|| |... +|..|+..|++||+|..+.+++|...+... |+ +||.|.+
T Consensus 2 p~kI~VgnL~~~~~~~t----------te~~Lk~~Fs~fGeV~~~~li~Dp~Tg~sl---------Gf---gfVef~d~~ 59 (136)
T 2j8a_A 2 SCEIVVYPAQDSTTTNI----------QDISIKNYFKKYGEISHFEAFNDPNSALPL---------HV---YLIKYASSD 59 (136)
T ss_dssp CCEEEEEESSSSCCCCC----------CHHHHHHHHHTTSCCSEEEEEECTTTCCEE---------EE---EEEECC---
T ss_pred CcEEEEeCCCCCCCCCC----------CHHHHHHHHHhcCCeEEEEEEecCCCCcee---------eE---EEEEECCCC
Confidence 568999999 7766 899999999999999999999997776643 88 9999994
Q ss_pred --c-hH---HHHHHH--HhcCccceecCceeEEEEEEeecccCCC
Q 019393 255 --Y-RD---FYNTLK--VLCGRSMQKQGSQLKADYEVTWDKDGFF 291 (341)
Q Consensus 255 --y-~~---F~kAM~--aLrGmKL~~kGk~l~a~ikV~fD~tkhl 291 (341)
. .+ ..+|+. .|.|..+ .|+ .|+|..|+.+-+
T Consensus 60 g~~d~a~kAA~kAi~~~~lng~~I--~Gr----~irV~ln~~g~~ 98 (136)
T 2j8a_A 60 GKINDAAKAAFSAVRKHESSGCFI--MGF----KFEVILNKHSIL 98 (136)
T ss_dssp ---CCHHHHHHHHHHHTTTTCEEE--TTE----EEEEEECCTTHH
T ss_pred CCcchHHHHHHHHHHHhhhcCCee--cCc----EEEEEECcccHH
Confidence 2 22 788888 7888888 664 567778999988
No 194
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.19 E-value=1.8e-06 Score=71.72 Aligned_cols=75 Identities=13% Similarity=0.126 Sum_probs=60.1
Q ss_pred CCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCce----eeeeecCCCCCCCCCCCCCCCcccceeEEEEEEecc
Q 019393 179 QEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKI----RNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEK 254 (341)
Q Consensus 179 eRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkI----RnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~e 254 (341)
+.+-+|+|.|||... +++-|+..|+.||+| ..|.|+.+ +.++ ..|+ |||+|..
T Consensus 21 ~~~~~v~V~nLp~~~----------te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr---------~~G~---aFV~F~~ 77 (123)
T 2dha_A 21 ENQVIVRMRGLPFTA----------TAEEVVAFFGQHCPITGGKEGILFVTY-PDGR---------PTGD---AFVLFAC 77 (123)
T ss_dssp CSCCEEEECSCCTTC----------CHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSC---------EEEE---EEECCSS
T ss_pred CCCCEEEEeCCCCCC----------CHHHHHHHHHhhCCccCCcceEEEEEC-CCCC---------EeeE---EEEEECC
Confidence 345699999999887 899999999999986 68999876 4443 2377 9999999
Q ss_pred chHHHHHHHHhcCccceecCceeEE
Q 019393 255 YRDFYNTLKVLCGRSMQKQGSQLKA 279 (341)
Q Consensus 255 y~~F~kAM~aLrGmKL~~kGk~l~a 279 (341)
..+..+||+. .|..| .|+.+.+
T Consensus 78 ~~~A~~Al~~-~~~~l--~gR~i~V 99 (123)
T 2dha_A 78 EEYAQNALRK-HKDLL--GKRYIEL 99 (123)
T ss_dssp HHHHHHHHTT-TTEES--SSCEECC
T ss_pred HHHHHHHHHh-CCCee--CCeEEEE
Confidence 9999999986 77655 6775433
No 195
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.18 E-value=3.4e-06 Score=76.10 Aligned_cols=67 Identities=13% Similarity=0.212 Sum_probs=57.7
Q ss_pred CeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHH
Q 019393 182 DTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNT 261 (341)
Q Consensus 182 DTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kA 261 (341)
-||+|.|||..+ +++.|+.+|++||.|..|.|... .|+ |||+|....+..+|
T Consensus 23 ~~l~V~nLp~~~----------te~~l~~~F~~~G~i~~v~i~~~---------------kg~---afV~f~~~~~A~~A 74 (261)
T 3sde_A 23 CRLFVGNLPTDI----------TEEDFKRLFERYGEPSEVFINRD---------------RGF---GFIRLESRTLAEIA 74 (261)
T ss_dssp GEEEEESCCTTC----------CHHHHHHHTGGGCCCSEEEEETT---------------TTE---EEEECSSHHHHHHH
T ss_pred CEEEEECCCCCC----------CHHHHHHHHHhcCCEEEEEEeCC---------------CcE---EEEEECCHHHHHHH
Confidence 389999999888 89999999999999999999532 266 99999999999999
Q ss_pred HHHhcCccceecCceeE
Q 019393 262 LKVLCGRSMQKQGSQLK 278 (341)
Q Consensus 262 M~aLrGmKL~~kGk~l~ 278 (341)
|..|.|..+ .|+.+.
T Consensus 75 ~~~l~g~~i--~g~~l~ 89 (261)
T 3sde_A 75 KAELDGTIL--KSRPLR 89 (261)
T ss_dssp HHHHTTCEE--TTEECE
T ss_pred HHHcCCcEE--CCceeE
Confidence 999999877 554443
No 196
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.16 E-value=3.6e-06 Score=67.47 Aligned_cols=59 Identities=20% Similarity=0.379 Sum_probs=48.1
Q ss_pred HHHHh-hccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHHHHhcCccceecCceeEEEE
Q 019393 208 THTVF-STFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 208 l~~vF-e~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM~aLrGmKL~~kGk~l~a~i 281 (341)
|+..| ++||+|.+|.|+.+ ..+ ...|. |||+|....+..+|+++|.|+.+ .|+.+.|++
T Consensus 43 l~~~f~~~~G~V~~v~i~~~-~~~---------~~~G~---~fV~f~~~~~A~~A~~~lng~~~--~Gr~i~v~~ 102 (104)
T 1jmt_A 43 VFTEMEEKYGEVEEMNVCDN-LGD---------HLVGN---VYVKFRREEDAEKAVIDLNNRWF--NGQPIHAEL 102 (104)
T ss_dssp HHHHHHHHTCCEEEEEECCS-SSS---------SSEEE---EEEEESCHHHHHHHHHHHTTCEE--TTEECCEEE
T ss_pred HHHHhhccCCceEEEEEEeC-CCC---------CccEE---EEEEECCHHHHHHHHHHHCCCEE--CCEEEEEEE
Confidence 44555 99999999999864 222 23477 99999999999999999999998 899887764
No 197
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=98.13 E-value=6.4e-06 Score=76.36 Aligned_cols=72 Identities=14% Similarity=0.187 Sum_probs=57.2
Q ss_pred CCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHH
Q 019393 181 PDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYN 260 (341)
Q Consensus 181 PDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~k 260 (341)
--||||.|||...-. +.....-.|+.|+.+|++||+|..|.|+.. .|+ |||+|....+...
T Consensus 134 ~rtLfVgnL~~~~~~-~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~---------------kG~---AFV~F~~~~~Ae~ 194 (240)
T 3u1l_A 134 NKTLYVGGIDGALNS-KHLKPAQIESRIRFVFSRLGDIDRIRYVES---------------KNC---GFVKFKYQANAEF 194 (240)
T ss_dssp CCEEEEECTTGGGTT-CCCCHHHHHHHHHHHHHTTSCEEEEEEEGG---------------GTE---EEEEESSHHHHHH
T ss_pred CceeecCCCChhhhc-ccccccCcHHHHHHHHHccCCEEEEEEECC---------------CCE---EEEEeCCHHHHHH
Confidence 349999999977510 000011168999999999999999999831 267 9999999999999
Q ss_pred HHHHhcCccce
Q 019393 261 TLKVLCGRSMQ 271 (341)
Q Consensus 261 AM~aLrGmKL~ 271 (341)
|+++|.|..|.
T Consensus 195 A~~am~g~~l~ 205 (240)
T 3u1l_A 195 AKEAMSNQTLL 205 (240)
T ss_dssp HHHHHTTCCCC
T ss_pred HHHHhCCCEEe
Confidence 99999999994
No 198
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.05 E-value=8.5e-06 Score=67.06 Aligned_cols=59 Identities=17% Similarity=0.237 Sum_probs=51.3
Q ss_pred HHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHHHHhcCccceecCceeEEEE
Q 019393 205 MLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 205 E~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM~aLrGmKL~~kGk~l~a~i 281 (341)
++-|+..|++||+|.+|.|+...+ .|. |||+|..-.+..+|+++|.|+.+ .|+.+.|++
T Consensus 31 ~edl~~~f~kfG~V~~v~i~~~~~-------------~G~---~fV~f~~~e~A~~Ai~~lnG~~f--~GR~i~v~~ 89 (114)
T 3s6e_A 31 KDDVIEECNKHGGVIHIYVDKNSA-------------QGN---VYVKCPSIAAAIAAVNALHGRWF--AGKMITAAY 89 (114)
T ss_dssp HHHHHHHHTTTTCCSEEEECTTCT-------------TCC---EEEECSSHHHHHHHHHHHTTCEE--TTEECEEEE
T ss_pred HHHHHHHHhccCCEEEEEEecCCC-------------cEE---EEEEECCHHHHHHHHHHhCCCEE--CCEEEEEEE
Confidence 345789999999999999976432 266 99999999999999999999998 999998887
No 199
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=98.01 E-value=1.4e-05 Score=66.89 Aligned_cols=75 Identities=17% Similarity=0.198 Sum_probs=60.1
Q ss_pred CCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCcee--eeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccch
Q 019393 179 QEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIR--NLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYR 256 (341)
Q Consensus 179 eRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIR--nvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~ 256 (341)
...-||+|.|||... +|+-|+..|+.| .|. +|.|+.+.. ++. .|+ |||+|....
T Consensus 40 ~~~~~lfVgnLp~~~----------te~dL~~~F~~~-~i~~~~v~i~~d~~-Grs---------rGf---aFV~F~~~e 95 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGC----------TKEEIVQFFSGL-EIVPNGITLPVDPE-GKI---------TGE---AFVQFASQE 95 (126)
T ss_dssp SSCCEEEEECCCTTC----------CHHHHHHHTTTS-CEEEEEEECCCCSS-SSS---------CSE---EEEEESSTT
T ss_pred CCCCEEEEeCCCCCC----------CHHHHHHHHhcC-CceeeEEEEEECCC-CCC---------ceE---EEEEECCHH
Confidence 445699999999888 899999999999 566 899987643 543 377 999999999
Q ss_pred HHHHHHHHhcCccceecCceeEEE
Q 019393 257 DFYNTLKVLCGRSMQKQGSQLKAD 280 (341)
Q Consensus 257 ~F~kAM~aLrGmKL~~kGk~l~a~ 280 (341)
+..+|++. .|..| .|+.+.+.
T Consensus 96 ~A~~Al~~-~~~~l--~gR~I~V~ 116 (126)
T 2hgm_A 96 LAEKALGK-HKERI--GHRYIEVF 116 (126)
T ss_dssp HHHHHHTT-TTCCB--TTBCCCCE
T ss_pred HHHHHHHH-CCCEE--CCEEEEEE
Confidence 99999985 56555 78765543
No 200
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=97.95 E-value=4.1e-06 Score=69.52 Aligned_cols=75 Identities=21% Similarity=0.224 Sum_probs=58.6
Q ss_pred CCCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCC-CCCCCCCCCCCcccceeEEEEEEeccch
Q 019393 178 KQEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDD-PGKDADEDGGDIISGLHCKIVVQFEKYR 256 (341)
Q Consensus 178 geRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dp-yr~~~~~~~g~~~~gL~feayVQy~ey~ 256 (341)
...+-||||.|||..+ +++-|+.+|+.||.|.. +.+.|+ .+. ..|. |||+|....
T Consensus 10 ~~~~~~l~V~nLp~~~----------t~~~l~~~f~~~g~~~~--~~~~~~~~~~---------~~g~---afV~f~~~~ 65 (175)
T 1fje_B 10 STTPFNLFIGNLNPNK----------SVAELKVAISELFAKND--LAVVDVRTGT---------NRKF---GYVDFESAE 65 (175)
T ss_dssp CSSSEEEEEECCCTTS----------CHHHHHHHHHHHHHHHT--CCCCEEEEET---------TTTE---EEEEESSHH
T ss_pred CCCCcEEEEeCCCCCC----------CHHHHHHHHHHhCCcce--EEEEECCCCc---------cccE---EEEEECCHH
Confidence 3456699999999988 89999999999999877 333332 222 2377 999999999
Q ss_pred HHHHHHHHhcCccceecCceeEE
Q 019393 257 DFYNTLKVLCGRSMQKQGSQLKA 279 (341)
Q Consensus 257 ~F~kAM~aLrGmKL~~kGk~l~a 279 (341)
+..+|| .|.|..+ .|+.+.+
T Consensus 66 ~a~~A~-~l~g~~~--~g~~l~v 85 (175)
T 1fje_B 66 DLEKAL-ELTGLKV--FGNEIKL 85 (175)
T ss_dssp HHHHHH-HGGGEEE--TTEEEEE
T ss_pred HHHHHH-hcCCCEe--CCeEEEE
Confidence 999999 5999988 5775543
No 201
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=97.94 E-value=2.3e-05 Score=76.11 Aligned_cols=75 Identities=12% Similarity=0.136 Sum_probs=60.5
Q ss_pred CCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHH
Q 019393 181 PDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYN 260 (341)
Q Consensus 181 PDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~k 260 (341)
-.+|||.|+...|=+ +|+.|+.+|++||+|.+|.||. + .|+ |||+|..-.+..+
T Consensus 18 s~~l~VgN~gl~~~~--------te~~L~~~F~~~G~V~~v~~~~----~-----------kgf---aFV~f~~~~~A~~ 71 (345)
T 3tht_A 18 TQSLVVANGGLGNGV--------SRNQLLPVLEKCGLVDALLMPP----N-----------KPY---SFARYRTTEESKR 71 (345)
T ss_dssp CSEEEEETCSGGGTC--------CHHHHHHHHHTTSCEEEEECCT----T-----------CSE---EEEEESSHHHHHH
T ss_pred CCEEEEEcCCCCCCC--------CHHHHHHHHHhcCCeEEEEEeC----C-----------CCE---EEEEECCHHHHHH
Confidence 369999986555522 8999999999999999998864 1 167 9999999999999
Q ss_pred HHHHhcCccceec-Cc--eeEEEE
Q 019393 261 TLKVLCGRSMQKQ-GS--QLKADY 281 (341)
Q Consensus 261 AM~aLrGmKL~~k-Gk--~l~a~i 281 (341)
||++|.|..++.. |+ .+.+++
T Consensus 72 Ai~~lnG~~~~~~~g~~~~ly~~~ 95 (345)
T 3tht_A 72 AYVTLNGKEVVDDLGQKITLYLNF 95 (345)
T ss_dssp HHHHTTTCEEECTTSCEEECEEEE
T ss_pred HHHHhCCCccccccCCceEEEEEE
Confidence 9999999999754 55 344444
No 202
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=97.94 E-value=1.8e-05 Score=65.15 Aligned_cols=68 Identities=15% Similarity=0.299 Sum_probs=56.6
Q ss_pred CeEEEcCCccccccCCCCCCCCcHHHHHHHhhcc----C-------ceeeeeecCCCCCCCCCCCCCCCcccceeEEEEE
Q 019393 182 DTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTF----G-------KIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVV 250 (341)
Q Consensus 182 DTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~F----G-------kIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayV 250 (341)
-||||.|||..+ +++.|+..|++| | .|.++.+... .|. |||
T Consensus 5 ~~l~V~nLp~~~----------t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~---------------~g~---afV 56 (172)
T 2g4b_A 5 RRLYVGNIPFGI----------TEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD---------------KNF---AFL 56 (172)
T ss_dssp GEEEEESCCTTC----------CHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT---------------TTE---EEE
T ss_pred cEEEEcCCCccc----------CHHHHHHHHHHHhhhcccccCCCCceeeeEecCC---------------CCE---EEE
Confidence 489999999998 899999999999 5 5666665422 266 999
Q ss_pred EeccchHHHHHHHHhcCccceecCceeEEE
Q 019393 251 QFEKYRDFYNTLKVLCGRSMQKQGSQLKAD 280 (341)
Q Consensus 251 Qy~ey~~F~kAM~aLrGmKL~~kGk~l~a~ 280 (341)
+|....+..+|| .|.|..+ .|+.+.+.
T Consensus 57 ~f~~~~~A~~A~-~~~~~~~--~g~~i~v~ 83 (172)
T 2g4b_A 57 EFRSVDETTQAM-AFDGIIF--QGQSLKIR 83 (172)
T ss_dssp EESSHHHHHHHG-GGTTCEE--TTEECEEE
T ss_pred EeCCHHHHHHHH-HhCCcEe--cCceeeec
Confidence 999999999999 9999988 78766654
No 203
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.86 E-value=3.7e-05 Score=64.76 Aligned_cols=71 Identities=13% Similarity=0.208 Sum_probs=59.5
Q ss_pred eEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEecc-chHHHHH
Q 019393 183 TIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEK-YRDFYNT 261 (341)
Q Consensus 183 TI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~e-y~~F~kA 261 (341)
.|+|.|||.. ..|++.|+.+|+.||+|..||+..++.. |||-|.+ ..+..+|
T Consensus 20 il~v~~l~~~---------~~sredLke~F~~~G~V~~Vd~~~g~~t------------------gfVrf~~~~~~A~~a 72 (121)
T 1owx_A 20 LLKFSGDLDD---------QTCREDLHILFSNHGEIKWIDFVRGAKE------------------GIILFKEKAKEALGK 72 (121)
T ss_dssp EEEEEESCCS---------SCCHHHHHHHTCSSCCEEEEECCTTCSE------------------EEEEESSCHHHHHHH
T ss_pred EEEEecCCCC---------cCCHHHHHHHHHhcCCEEEEEEecCCCE------------------EEEEECCChHHHHHH
Confidence 5788888865 1389999999999999999999987663 9999999 8999999
Q ss_pred HHHhcCccceecCceeEEE
Q 019393 262 LKVLCGRSMQKQGSQLKAD 280 (341)
Q Consensus 262 M~aLrGmKL~~kGk~l~a~ 280 (341)
+.+|..-+++.+|..+++.
T Consensus 73 v~~ln~~~~~i~g~~~~~e 91 (121)
T 1owx_A 73 AKDANNGNLQLRNKEVTWE 91 (121)
T ss_dssp HHHTTTSCBCTTSSSEEEE
T ss_pred HHHhhcCCcEEeCcEEEEE
Confidence 9999877777788665543
No 204
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=97.82 E-value=4.1e-05 Score=64.33 Aligned_cols=69 Identities=12% Similarity=0.221 Sum_probs=55.3
Q ss_pred CCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCce-----------eeeeecCCCCCCCCCCCCCCCcccceeEEEE
Q 019393 181 PDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKI-----------RNLNVAEDDDPGKDADEDGGDIISGLHCKIV 249 (341)
Q Consensus 181 PDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkI-----------RnvDIP~~Dpyr~~~~~~~g~~~~gL~feay 249 (341)
.-||||.|||..+ +++.|+.+|+.||+| .++.+.. ..|. ||
T Consensus 4 ~~~l~V~nLp~~~----------te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~---------------~~g~---af 55 (198)
T 2yh0_A 4 ARRLYVGNIPFGI----------TEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ---------------DKNF---AF 55 (198)
T ss_dssp CCEEEEESCCTTC----------CHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEET---------------TTTE---EE
T ss_pred eeEEEEcCCCCCC----------CHHHHHHHHHHHHhhcccccCCCCceEEeEecC---------------CCCE---EE
Confidence 3499999999988 899999999999644 4444321 1366 99
Q ss_pred EEeccchHHHHHHHHhcCccceecCceeEEE
Q 019393 250 VQFEKYRDFYNTLKVLCGRSMQKQGSQLKAD 280 (341)
Q Consensus 250 VQy~ey~~F~kAM~aLrGmKL~~kGk~l~a~ 280 (341)
|+|....+..+|| .|.|..+ .|+.+.++
T Consensus 56 V~F~~~~~A~~Al-~l~g~~~--~g~~i~v~ 83 (198)
T 2yh0_A 56 LEFRSVDETTQAM-AFDGIIF--QGQSLKIR 83 (198)
T ss_dssp EEESCSHHHHHHG-GGTTEEE--TTEEEEEE
T ss_pred EEeCCHHHHHHHH-HhcCCEE--cCceEEEe
Confidence 9999999999999 8999888 78765554
No 205
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.81 E-value=4.7e-05 Score=61.22 Aligned_cols=63 Identities=21% Similarity=0.312 Sum_probs=49.3
Q ss_pred CCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHHHHhcCccceecCceeEEE
Q 019393 201 SKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTLKVLCGRSMQKQGSQLKAD 280 (341)
Q Consensus 201 ~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM~aLrGmKL~~kGk~l~a~ 280 (341)
..-+++.|+.+|++||+|..|.|+ ++ ..|+ |||+|+...+..+||+.+.|. .|+.+
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~---------~rGf---aFVeF~~~~~A~~Ai~~~~~~----~g~~l--- 82 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SK---------KPGT---AVVEFATVKAAELAVQNEVGL----VDNPL--- 82 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SS---------SSSE---EEEEESCHHHHHHHHHTCCBC----SSSBC---
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cC---------CCCE---EEEEECCHHHHHHHHHhcCCC----CCCeE---
Confidence 445899999999999999999998 22 2377 999999999999999996552 45544
Q ss_pred EEEeeccc
Q 019393 281 YEVTWDKD 288 (341)
Q Consensus 281 ikV~fD~t 288 (341)
+|.|-+.
T Consensus 83 -~V~~a~~ 89 (100)
T 2d9o_A 83 -KISWLEG 89 (100)
T ss_dssp -EEECSSC
T ss_pred -EEEEccC
Confidence 5566543
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.74 E-value=3.1e-05 Score=62.77 Aligned_cols=76 Identities=18% Similarity=0.301 Sum_probs=62.9
Q ss_pred CC-eEEEcCCcc----ccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccc
Q 019393 181 PD-TIVIKGVPS----RWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKY 255 (341)
Q Consensus 181 PD-TI~l~gLP~----rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey 255 (341)
|| ||.+.-.|. .||-+. -..-|.+.|+.||+|..+.|+.+. +||.|.+=
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~------l~~~L~~~F~~~G~Vi~vr~~~d~--------------------~fVtF~d~ 59 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDA------LIDELLQQFASFGEVILIRFVEDK--------------------MWVTFLEG 59 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHH------HHHHHHHHHHTTCCEEEEEECSSS--------------------EEEEESSH
T ss_pred CCCeEEEEeccCccccccCCHH------HHHHHHHHHHhCCCeEEEEEecCC--------------------EEEEECCh
Confidence 44 888888884 566532 344589999999999999999853 79999999
Q ss_pred hHHHHHHHHhcCccceecCceeEEEEEE-ee
Q 019393 256 RDFYNTLKVLCGRSMQKQGSQLKADYEV-TW 285 (341)
Q Consensus 256 ~~F~kAM~aLrGmKL~~kGk~l~a~ikV-~f 285 (341)
.+..+|++ |.|.++ .|+.+++++|- +|
T Consensus 60 ~sAlaAi~-mnG~~v--~Gr~LkV~lkt~dW 87 (91)
T 2dnr_A 60 SSALNVLS-LNGKEL--LNRTITIALKSPSG 87 (91)
T ss_dssp HHHHHGGG-GTTCEE--TTEEEEEEECCCSS
T ss_pred HHHHHHHh-cCCeEe--CCeEEEEEeCCCCc
Confidence 99999998 999988 99999998875 44
No 207
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=97.64 E-value=9.4e-05 Score=64.92 Aligned_cols=88 Identities=15% Similarity=0.214 Sum_probs=62.3
Q ss_pred CCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHH
Q 019393 179 QEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDF 258 (341)
Q Consensus 179 eRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F 258 (341)
..+..+.|.++-.. .. ...-.++-+...|++||+|.+|-||...+-.... +...|. +||+|....+.
T Consensus 122 ~~s~v~~l~n~v~~----~e-~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~-----~~~~G~---~fv~f~~~~~a 188 (222)
T 3dxb_A 122 MESTVMVLRNMVDP----KD-IDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEED-----AEIIVK---IFVEFSIASET 188 (222)
T ss_dssp CBCSEEEEESSCCG----GG-CCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTT-----CCEEEE---EEEEESSHHHH
T ss_pred cccccchhhcCCCH----HH-HHHHHHHHHHHHHHccCCeEEEEEecCCCCcccC-----cCceeE---EEEEECCHHHH
Confidence 33455666555221 11 1223566799999999999999998543221110 123366 99999999999
Q ss_pred HHHHHHhcCccceecCceeEEEE
Q 019393 259 YNTLKVLCGRSMQKQGSQLKADY 281 (341)
Q Consensus 259 ~kAM~aLrGmKL~~kGk~l~a~i 281 (341)
.+||++|.|+.+ .|+.+.|.+
T Consensus 189 ~~a~~~l~gr~~--~gr~i~~~~ 209 (222)
T 3dxb_A 189 HKAIQALNGRWF--AGRKVVAEV 209 (222)
T ss_dssp HHHHHHHTTCBS--SSSBCEEEE
T ss_pred HHHHHHhcCceE--CCeEEEEEE
Confidence 999999999998 999999887
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.48 E-value=0.00011 Score=60.16 Aligned_cols=73 Identities=18% Similarity=0.274 Sum_probs=62.1
Q ss_pred CC-eEEEcCCcc-----ccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEecc
Q 019393 181 PD-TIVIKGVPS-----RWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEK 254 (341)
Q Consensus 181 PD-TI~l~gLP~-----rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~e 254 (341)
|| ||.+.-+|. .||-+. -..-|.+.|+.||+|..|.|+.+. +||.|.+
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~------l~~~L~~~F~~~G~Vilvr~v~d~--------------------~fVtF~d 67 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPED------LRTELMQTLGSYGTIVLVRINQGQ--------------------MLVTFAD 67 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHH------HHHHHHHHHHHHSCCSEEEEETTE--------------------EEEECSC
T ss_pred CCCeEEEEecCCcccccccCCHH------HHHHHHHHHHHCCCEEEEEEecCc--------------------EEEEEcC
Confidence 44 899999884 587642 334489999999999999999884 8999999
Q ss_pred chHHHHHHHHhcCccceecCceeEEEEE
Q 019393 255 YRDFYNTLKVLCGRSMQKQGSQLKADYE 282 (341)
Q Consensus 255 y~~F~kAM~aLrGmKL~~kGk~l~a~ik 282 (341)
=.+..+||+ |.|.++ .|+.++++.|
T Consensus 68 ~~sAl~AI~-ldG~~v--~Gr~L~V~~k 92 (95)
T 1ufw_A 68 SHSALSVLD-VDGMKV--KGRAVKISGP 92 (95)
T ss_dssp SHHHHHHHH-GGGSEE--TTEEEEEECC
T ss_pred hHHHHHHHh-cCCeee--CCeEEEEecc
Confidence 999999999 999999 9998888765
No 209
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=60.22 E-value=14 Score=37.17 Aligned_cols=59 Identities=17% Similarity=0.279 Sum_probs=44.8
Q ss_pred CCCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchH
Q 019393 178 KQEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRD 257 (341)
Q Consensus 178 geRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~ 257 (341)
..||.++|++ .|-+| ...-+...|+.|| .|+|--.|.. - |||.+.+..+
T Consensus 437 ~~R~~vl~v~-f~~~~----------~~~~i~~~fs~fg---~v~V~widdt--------------~---a~V~~~~~~~ 485 (507)
T 3d45_A 437 PKRDHVLHVT-FPKEW----------KTSDLYQLFSAFG---NIQISWIDDT--------------S---AFVSLSQPEQ 485 (507)
T ss_dssp CCGGGEEEEE-CCTTC----------CHHHHHHHGGGGC---CCEEEECSSS--------------E---EEEECSCHHH
T ss_pred CCcCcEEEEe-CCCCC----------CHHHHHHHHHhcC---CEEEEEEcCC--------------e---EEEEECCHHH
Confidence 4678888886 88888 3467889999999 4566322221 1 9999999999
Q ss_pred HHHHHHHhcC
Q 019393 258 FYNTLKVLCG 267 (341)
Q Consensus 258 F~kAM~aLrG 267 (341)
...++++++.
T Consensus 486 a~~~l~~~~~ 495 (507)
T 3d45_A 486 VQIAVNTSKY 495 (507)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 9999999864
No 210
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=56.44 E-value=22 Score=29.16 Aligned_cols=58 Identities=17% Similarity=0.312 Sum_probs=45.6
Q ss_pred CCCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchH
Q 019393 178 KQEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRD 257 (341)
Q Consensus 178 geRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~ 257 (341)
.-|+-.+|| +.|-.| -...+.++|+.|| .|.|-=.|.. -|||-|.+-..
T Consensus 13 p~r~HVf~l-~FP~ew----------Kt~DI~~lFs~fg---gv~I~WidDT-----------------sAlvvf~~~~~ 61 (100)
T 1whv_A 13 PKRDHVLHV-TFPKEW----------KTSDLYQLFSAFG---NIQISWIDDT-----------------SAFVSLSQPEQ 61 (100)
T ss_dssp CCCCSEEEE-ECCTTC----------CHHHHHHHHTTTC---SCCCEEEETT-----------------EEEEECSCHHH
T ss_pred CCCCeEEEE-eCChhh----------hhHHHHHHhhccC---CEEEEEEcCC-----------------eEEEEecCHHH
Confidence 478889999 999999 5677999999998 4444332211 19999999999
Q ss_pred HHHHHHHhc
Q 019393 258 FYNTLKVLC 266 (341)
Q Consensus 258 F~kAM~aLr 266 (341)
...||.+++
T Consensus 62 a~~al~~i~ 70 (100)
T 1whv_A 62 VQIAVNTSK 70 (100)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhcc
Confidence 999999875
No 211
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=56.11 E-value=10 Score=31.21 Aligned_cols=57 Identities=18% Similarity=0.290 Sum_probs=45.3
Q ss_pred CCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHH
Q 019393 179 QEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDF 258 (341)
Q Consensus 179 eRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F 258 (341)
-|+-.+|| +.|-.| -...+.++|+.|| .|.|-=.|.. - |||-|.+-...
T Consensus 4 ~R~HV~~l-~FP~ew----------Kt~Di~~lFs~fg---gv~I~WidDT--------------s---Alvvf~~~~~a 52 (101)
T 3ctr_A 4 GSDHVLHV-TFPKEW----------KTSDLYQLFSAFG---NIQISWIDDT--------------S---AFVSLSQPEQV 52 (101)
T ss_dssp EEEEEEEE-ECCTTC----------CHHHHHHHTTTSE---EEEEEEEETT--------------E---EEEEEEEECHH
T ss_pred CCCeEEEE-eCChhh----------hhHHHHHHHhccC---CEEEEEEcCC--------------e---EEEEecCHHHH
Confidence 36678899 999999 5677999999999 6666544321 1 99999999999
Q ss_pred HHHHHHhc
Q 019393 259 YNTLKVLC 266 (341)
Q Consensus 259 ~kAM~aLr 266 (341)
..||.+++
T Consensus 53 ~~al~~i~ 60 (101)
T 3ctr_A 53 KIAVNTSK 60 (101)
T ss_dssp HHHHHHHT
T ss_pred HHHHHhcc
Confidence 99999875
No 212
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=56.00 E-value=40 Score=28.36 Aligned_cols=72 Identities=15% Similarity=0.185 Sum_probs=58.9
Q ss_pred CCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhcc-----CceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEec
Q 019393 179 QEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTF-----GKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFE 253 (341)
Q Consensus 179 eRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~F-----GkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ 253 (341)
+-|-||-|=+||-.= +..-++.+.+.+ |.|+.|-+-.+ + |- |.|-|.
T Consensus 19 ~~~rtiaL~~ipDtv----------ndarIr~lve~~~~i~~g~i~KI~L~pD--H-------------~G---Aivef~ 70 (117)
T 2l9w_A 19 ELETLICLFPLSDKV----------SPSLICQFLQEEIHINEKDIRKILLVSD--F-------------NG---AIIIFR 70 (117)
T ss_dssp TTTSCEEEECCCTTC----------CHHHHHHHHHHHTCCCTTTCSEEEEETT--T-------------TE---EEEECS
T ss_pred cCCcEEEEecCCCCC----------CHHHHHHHHhhhhccCccceeEEEEecC--C-------------Cc---eEEEEc
Confidence 456688888887544 888899999999 98888876554 1 22 899999
Q ss_pred cchHHHHHHHHhcCccceecCceeEEE
Q 019393 254 KYRDFYNTLKVLCGRSMQKQGSQLKAD 280 (341)
Q Consensus 254 ey~~F~kAM~aLrGmKL~~kGk~l~a~ 280 (341)
.-....||+=+|.|+.+ +|+.+.|-
T Consensus 71 d~~~AgKasLaL~G~ef--~gr~Lr~g 95 (117)
T 2l9w_A 71 DSKFAAKMLMILNGSQF--QGKVIRSG 95 (117)
T ss_dssp CHHHHHHHHHHHSSEEE--TTEEEEEE
T ss_pred cchhhHHHHhhcCCeee--cCeEEEec
Confidence 99999999999999999 68888773
No 213
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=45.25 E-value=51 Score=27.00 Aligned_cols=75 Identities=12% Similarity=0.145 Sum_probs=57.1
Q ss_pred CCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHH
Q 019393 179 QEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDF 258 (341)
Q Consensus 179 eRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F 258 (341)
--|.|+++.+||..=|.... .-.-++..|.+|+++..... +.-+|. +-|.|..-.+.
T Consensus 3 ~~pntLiitnl~~~vF~~~~-----lk~~~e~Lf~~~~~~~tF~~--lkSFRR----------------irv~F~~~~~A 59 (104)
T 1wey_A 3 SGSSGLIACVANDDVFSESE-----TRAKFESLFRTYDKDTTFQY--FKSFKR----------------VRINFSNPLSA 59 (104)
T ss_dssp SCCCEEEEECCCGGGGSTTT-----HHHHHHHHHHTTCSSCEEEE--ETTTTE----------------EEEECSSTTHH
T ss_pred CCCceEEEecCCHHHcCCHH-----HHHHHHHHHHhhCcCcceee--cCcceE----------------EEEEeCChHHH
Confidence 35899999999999998642 22578999999998877543 223343 78999999999
Q ss_pred HHHHHHhcCccceecCceeE
Q 019393 259 YNTLKVLCGRSMQKQGSQLK 278 (341)
Q Consensus 259 ~kAM~aLrGmKL~~kGk~l~ 278 (341)
++|=-.|.|-.. .|+.++
T Consensus 60 ~~AR~~Lh~~~f--~g~~~r 77 (104)
T 1wey_A 60 ADARLRLHKTEF--LGKEMK 77 (104)
T ss_dssp HHHHHTSTTSEE--TTEECE
T ss_pred HHHHHHhcccee--cCceeE
Confidence 999999998887 465433
No 214
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=42.12 E-value=33 Score=28.63 Aligned_cols=62 Identities=15% Similarity=0.247 Sum_probs=41.6
Q ss_pred CCCCeEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHH
Q 019393 179 QEPDTIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDF 258 (341)
Q Consensus 179 eRPDTI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F 258 (341)
..+-.|.|-|-|-. .-..+-.-|++||.|-....|.- ... .+|+|..-.+.
T Consensus 22 ~~~~wVtVFGFp~~-----------~~~~VL~~F~~~G~Iv~~~~~~~---------------~NW---ihI~Y~s~~~A 72 (119)
T 1wwh_A 22 LDDTWVTVFGFPQA-----------SASYILLQFAQYGNILKHVMSNT---------------GNW---MHIRYQSKLQA 72 (119)
T ss_dssp GGGGEEEEECCCGG-----------GHHHHHHHHHTTSCEEEEEECSS---------------SSE---EEEEESSHHHH
T ss_pred CCCCEEEEECCCHH-----------HHHHHHHHHHhhCcEEEeccCCC---------------CCe---EEEEeCCHHHH
Confidence 34556777775432 34567788999999998886311 123 89999998888
Q ss_pred HHHHHHhcCccc
Q 019393 259 YNTLKVLCGRSM 270 (341)
Q Consensus 259 ~kAM~aLrGmKL 270 (341)
.+|+.. .|+.+
T Consensus 73 ~rAL~k-NG~ii 83 (119)
T 1wwh_A 73 RKALSK-DGRIF 83 (119)
T ss_dssp HHHHTT-TTCEE
T ss_pred HHHHHh-CCeEe
Confidence 887654 44444
No 215
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=27.02 E-value=2.3e+02 Score=22.21 Aligned_cols=80 Identities=11% Similarity=0.167 Sum_probs=53.3
Q ss_pred eEEEcCCccccccCCCCCCCCcHHHHHHHhhccCceeeeeecCCCCCCCCCCCCCCCcccceeEEEEEEeccchHHHHHH
Q 019393 183 TIVIKGVPSRWFAEPRVSSKPSMLVTHTVFSTFGKIRNLNVAEDDDPGKDADEDGGDIISGLHCKIVVQFEKYRDFYNTL 262 (341)
Q Consensus 183 TI~l~gLP~rWFa~~~~s~kPSE~vl~~vFe~FGkIRnvDIP~~Dpyr~~~~~~~g~~~~gL~feayVQy~ey~~F~kAM 262 (341)
.|+|+.||-.= +|+.+....+..+++--. .|..- ..+ .......-|||.|.+..+-..-.
T Consensus 3 KvVIRrLPP~L----------teeeF~~~l~~~~~~d~~------~fv~G--~~s--~~~~~~SRaYi~f~~~e~v~~f~ 62 (91)
T 1uw4_A 3 KVVIRRLPPTL----------TKEQLQEHLQPMPEHDYF------EFFSN--DTS--LYPHMYARAYINFKNQEDIILFR 62 (91)
T ss_dssp EEEEEEECTTC----------CHHHHHHHHCSCCCEEEE------EEEES--CCS--STTCCCEEEEEEESSSHHHHHHH
T ss_pred EEEEeCCCCCC----------CHHHHHHHhcCcccceEE------EEeCC--ccC--CCCCcceEEEEEeCCHHHHHHHH
Confidence 57888998765 788888888877643211 12110 000 01134567999999999999999
Q ss_pred HHhcCcccee-cCceeEEEEE
Q 019393 263 KVLCGRSMQK-QGSQLKADYE 282 (341)
Q Consensus 263 ~aLrGmKL~~-kGk~l~a~ik 282 (341)
+.++|...+= +|....|.++
T Consensus 63 ~~~~g~~F~D~kg~~~~a~VE 83 (91)
T 1uw4_A 63 DRFDGYVFLDNKGQEYPAIVE 83 (91)
T ss_dssp HHHTTCEEECTTCCEEECEEE
T ss_pred HHhCCcEEEcCCCCEeeeEEE
Confidence 9999998874 3655555443
No 216
>4hsp_A Hypothetical protein; PF11736 family protein, DUF3299, structural genomics, joint for structural genomics, JCSG; HET: MSE; 2.45A {Pseudomonas aeruginosa}
Probab=22.09 E-value=22 Score=30.88 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=20.9
Q ss_pred HHHhhccCeeEEecCccceeEEEc
Q 019393 127 YIVEKMDGIELNLEGVKYKLSVVI 150 (341)
Q Consensus 127 ~l~~kLdG~~lkLsGf~~~LkV~a 150 (341)
.++..|||+.++|.||--+|....
T Consensus 47 ~v~~~LdGk~VripGfvvPLe~~~ 70 (150)
T 4hsp_A 47 PVVKALDGIEAKLPGYIVPLEISE 70 (150)
T ss_dssp CCCGGGTTEEEEEEEEEEEEEECT
T ss_pred ccchhhCCCEEEeccEEEEeccCC
Confidence 567899999999999999998653
Done!