BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019395
(341 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EQP|A Chain A, Exo-B-(1,3)-Glucanase From Candida Albicans
Length = 394
Score = 155 bits (393), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 105/340 (30%), Positives = 161/340 (47%), Gaps = 50/340 (14%)
Query: 39 EYQITNGFGPDKAPQVLQDHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV 98
EY T G + A ++LQ HW ++IT++DFK +S+ G+N VRIP+G+W A P+V
Sbjct: 45 EYHWTQTLGKEAASRILQKHWSTWITEQDFKQISNLGLNFVRIPIGYW-AFQLLDNDPYV 103
Query: 99 GGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVID 158
G + L+ A WA K ++V +DLH APGSQNG ++S RD + N T+ V++
Sbjct: 104 QGQVQYLEKALGWARKNNIRVWIDLHGAPGSQNGFDNSGLRDSYNFQNGDNTQVTLNVLN 163
Query: 159 FLAARYANRP---SLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRL 215
+ +Y + IEL+NEPL P + +D LK ++ GY+++R+ S VI+ +
Sbjct: 164 TIFKKYGGNEYSDVVIGIELLNEPLGPVLNMDKLKQFFLDGYNSLRQTGSVTPVIIHDAF 223
Query: 216 GPADH-KELLSFASGLSRVVIDVHYYNLFSNNFNGLNVQQNIDYVNN------------- 261
+ L+ A G VV+D H+Y +FS N+ +I N
Sbjct: 224 QVFGYWNNFLTVAEGQWNVVVDHHHYQVFSGGELSRNINDHISVACNWGWDAKKESHWNV 283
Query: 262 ------------------------QRASDLGAVTTSNGPLTFVGEWTCEWNVKDASKQDY 297
+ A D S PL + +W+ D K D
Sbjct: 284 AGEWSAALTDCAKWLNGVNRGARYEGAYDNAPYIGSCQPLLDISQWS------DEHKTDT 337
Query: 298 QRFANAQLDVYGRATFGWAYWAHKCE-ANHWSLKWMIENG 336
+R+ AQLD + T GW +W+ K E A WS + + NG
Sbjct: 338 RRYIEAQLDAF-EYTGGWVFWSWKTENAPEWSFQTLTYNG 376
>pdb|2PB1|A Chain A, Exo-b-(1,3)-glucanase From Candida Albicans In Complex
With Unhydrolysed And Covalently Linked
2,4-dinitrophenyl-2-deoxy-2- Fluoro-b-d-glucopyranoside
At 1.9 A
Length = 400
Score = 155 bits (392), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 105/340 (30%), Positives = 161/340 (47%), Gaps = 50/340 (14%)
Query: 39 EYQITNGFGPDKAPQVLQDHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV 98
EY T G + A ++LQ HW ++IT++DFK +S+ G+N VRIP+G+W A P+V
Sbjct: 51 EYHWTQTLGKEAALRILQKHWSTWITEQDFKQISNLGLNFVRIPIGYW-AFQLLDNDPYV 109
Query: 99 GGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVID 158
G + L+ A WA K ++V +DLH APGSQNG ++S RD + N T+ V++
Sbjct: 110 QGQVQYLEKALGWARKNNIRVWIDLHGAPGSQNGFDNSGLRDSYNFQNGDNTQVTLNVLN 169
Query: 159 FLAARYANRP---SLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRL 215
+ +Y + IEL+NEPL P + +D LK ++ GY+++R+ S VI+ +
Sbjct: 170 TIFKKYGGNEYSDVVIGIELLNEPLGPVLNMDKLKQFFLDGYNSLRQTGSVTPVIIHDAF 229
Query: 216 GPADH-KELLSFASGLSRVVIDVHYYNLFSNNFNGLNVQQNIDYVNN------------- 261
+ L+ A G VV+D H+Y +FS N+ +I N
Sbjct: 230 QVFGYWNNFLTVAEGQWNVVVDHHHYQVFSGGELSRNINDHISVACNWGWDAKKESHWNV 289
Query: 262 ------------------------QRASDLGAVTTSNGPLTFVGEWTCEWNVKDASKQDY 297
+ A D S PL + +W+ D K D
Sbjct: 290 AGEWSAALTDCAKWLNGVNRGARYEGAYDNAPYIGSCQPLLDISQWS------DEHKTDT 343
Query: 298 QRFANAQLDVYGRATFGWAYWAHKCE-ANHWSLKWMIENG 336
+R+ AQLD + T GW +W+ K E A WS + + NG
Sbjct: 344 RRYIEAQLDAF-EYTGGWVFWSWKTENAPEWSFQTLTYNG 382
>pdb|2PC8|A Chain A, E292q Mutant Of Exo-B-(1,3)-Glucanase From Candida
Albicans In Complex With Two Separately Bound
Glucopyranoside Units At 1.8 A
Length = 400
Score = 155 bits (392), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 105/340 (30%), Positives = 161/340 (47%), Gaps = 50/340 (14%)
Query: 39 EYQITNGFGPDKAPQVLQDHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV 98
EY T G + A ++LQ HW ++IT++DFK +S+ G+N VRIP+G+W A P+V
Sbjct: 51 EYHWTQTLGKEAALRILQKHWSTWITEQDFKQISNLGLNFVRIPIGYW-AFQLLDNDPYV 109
Query: 99 GGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVID 158
G + L+ A WA K ++V +DLH APGSQNG ++S RD + N T+ V++
Sbjct: 110 QGQVQYLEKALGWARKNNIRVWIDLHGAPGSQNGFDNSGLRDSYNFQNGDNTQVTLNVLN 169
Query: 159 FLAARYANRP---SLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRL 215
+ +Y + IEL+NEPL P + +D LK ++ GY+++R+ S VI+ +
Sbjct: 170 TIFKKYGGNEYSDVVIGIELLNEPLGPVLNMDKLKQFFLDGYNSLRQTGSVTPVIIHDAF 229
Query: 216 GPADH-KELLSFASGLSRVVIDVHYYNLFSNNFNGLNVQQNIDYVNN------------- 261
+ L+ A G VV+D H+Y +FS N+ +I N
Sbjct: 230 QVFGYWNNFLTVAEGQWNVVVDHHHYQVFSGGELSRNINDHISVACNWGWDAKKESHWNV 289
Query: 262 ------------------------QRASDLGAVTTSNGPLTFVGEWTCEWNVKDASKQDY 297
+ A D S PL + +W+ D K D
Sbjct: 290 AGQWSAALTDCAKWLNGVNRGARYEGAYDNAPYIGSCQPLLDISQWS------DEHKTDT 343
Query: 298 QRFANAQLDVYGRATFGWAYWAHKCE-ANHWSLKWMIENG 336
+R+ AQLD + T GW +W+ K E A WS + + NG
Sbjct: 344 RRYIEAQLDAF-EYTGGWVFWSWKTENAPEWSFQTLTYNG 382
>pdb|2PBO|A Chain A, E27q Mutant Of Exo-B-(1,3)-Glucanase From Candida Albicans
At 1.85 A
Length = 400
Score = 155 bits (392), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 105/340 (30%), Positives = 161/340 (47%), Gaps = 50/340 (14%)
Query: 39 EYQITNGFGPDKAPQVLQDHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV 98
EY T G + A ++LQ HW ++IT++DFK +S+ G+N VRIP+G+W A P+V
Sbjct: 51 EYHWTQTLGKEAALRILQKHWSTWITEQDFKQISNLGLNFVRIPIGYW-AFQLLDNDPYV 109
Query: 99 GGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVID 158
G + L+ A WA K ++V +DLH APGSQNG ++S RD + N T+ V++
Sbjct: 110 QGQVQYLEKALGWARKNNIRVWIDLHGAPGSQNGFDNSGLRDSYNFQNGDNTQVTLNVLN 169
Query: 159 FLAARYANRP---SLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRL 215
+ +Y + IEL+NEPL P + +D LK ++ GY+++R+ S VI+ +
Sbjct: 170 TIFKKYGGNEYSDVVIGIELLNEPLGPVLNMDKLKQFFLDGYNSLRQTGSVTPVIIHDAF 229
Query: 216 GPADH-KELLSFASGLSRVVIDVHYYNLFSNNFNGLNVQQNIDYVNN------------- 261
+ L+ A G VV+D H+Y +FS N+ +I N
Sbjct: 230 QVFGYWNNFLTVAEGQWNVVVDHHHYQVFSGGELSRNINDHISVACNWGWDAKKESHWNV 289
Query: 262 ------------------------QRASDLGAVTTSNGPLTFVGEWTCEWNVKDASKQDY 297
+ A D S PL + +W+ D K D
Sbjct: 290 AGEWSAALTDCAKWLNGVNRGARYEGAYDNAPYIGSCQPLLDISQWS------DEHKTDT 343
Query: 298 QRFANAQLDVYGRATFGWAYWAHKCE-ANHWSLKWMIENG 336
+R+ AQLD + T GW +W+ K E A WS + + NG
Sbjct: 344 RRYIEAQLDAF-EYTGGWVFWSWKTENAPEWSFQTLTYNG 382
>pdb|1CZ1|A Chain A, Exo-B-(1,3)-Glucanase From Candida Albicans At 1.85 A
Resolution
pdb|1EQC|A Chain A, Exo-B-(1,3)-Glucanase From Candida Albicans In Complex
With Castanospermine At 1.85 A
Length = 394
Score = 155 bits (391), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 105/340 (30%), Positives = 161/340 (47%), Gaps = 50/340 (14%)
Query: 39 EYQITNGFGPDKAPQVLQDHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV 98
EY T G + A ++LQ HW ++IT++DFK +S+ G+N VRIP+G+W A P+V
Sbjct: 45 EYHWTQTLGKEAALRILQKHWSTWITEQDFKQISNLGLNFVRIPIGYW-AFQLLDNDPYV 103
Query: 99 GGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVID 158
G + L+ A WA K ++V +DLH APGSQNG ++S RD + N T+ V++
Sbjct: 104 QGQVQYLEKALGWARKNNIRVWIDLHGAPGSQNGFDNSGLRDSYNFQNGDNTQVTLNVLN 163
Query: 159 FLAARYANRP---SLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRL 215
+ +Y + IEL+NEPL P + +D LK ++ GY+++R+ S VI+ +
Sbjct: 164 TIFKKYGGNEYSDVVIGIELLNEPLGPVLNMDKLKQFFLDGYNSLRQTGSVTPVIIHDAF 223
Query: 216 GPADH-KELLSFASGLSRVVIDVHYYNLFSNNFNGLNVQQNIDYVNN------------- 261
+ L+ A G VV+D H+Y +FS N+ +I N
Sbjct: 224 QVFGYWNNFLTVAEGQWNVVVDHHHYQVFSGGELSRNINDHISVACNWGWDAKKESHWNV 283
Query: 262 ------------------------QRASDLGAVTTSNGPLTFVGEWTCEWNVKDASKQDY 297
+ A D S PL + +W+ D K D
Sbjct: 284 AGEWSAALTDCAKWLNGVNRGARYEGAYDNAPYIGSCQPLLDISQWS------DEHKTDT 337
Query: 298 QRFANAQLDVYGRATFGWAYWAHKCE-ANHWSLKWMIENG 336
+R+ AQLD + T GW +W+ K E A WS + + NG
Sbjct: 338 RRYIEAQLDAF-EYTGGWVFWSWKTENAPEWSFQTLTYNG 376
>pdb|3N9K|A Chain A, F229aE292S DOUBLE MUTANT OF EXO-Beta-1,3-Glucanase From
Candida Albicans In Complex With Laminaritriose At 1.7 A
Length = 399
Score = 154 bits (390), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 105/336 (31%), Positives = 165/336 (49%), Gaps = 42/336 (12%)
Query: 39 EYQITNGFGPDKAPQVLQDHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV 98
EY T G + A ++LQ HW ++IT++DFK +S+ G+N VRIP+G+W A P+V
Sbjct: 50 EYHWTQTLGKEAALRILQKHWSTWITEQDFKQISNLGLNFVRIPIGYW-AFQLLDNDPYV 108
Query: 99 GGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVID 158
G + L+ A WA K ++V +DLH APGSQNG ++S RD + N T+ V++
Sbjct: 109 QGQVQYLEKALGWARKNNIRVWIDLHGAPGSQNGFDNSGLRDSYNFQNGDNTQVTLNVLN 168
Query: 159 FLAARYANRP---SLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRL 215
+ +Y + IEL+NEPL P + +D LK ++ GY+++R+ S VI+ +
Sbjct: 169 TIFKKYGGNEYSDVVIGIELLNEPLGPVLNMDKLKQFFLDGYNSLRQTGSVTPVIIHDAA 228
Query: 216 GPADH-KELLSFASGLSRVVIDVHYYNLFSNNFNGLNVQQNIDYVNN-----QRASDLGA 269
+ L+ A G VV+D H+Y +FS N+ +I N ++ S
Sbjct: 229 QVFGYWNNFLTVAEGQWNVVVDHHHYQVFSGGELSRNINDHISVACNWGWDAKKESHWNV 288
Query: 270 VTTSNGPLTFVGEW---------------------TC-------EWNVKDASKQDYQRFA 301
+ + LT +W +C +W+ D K D +R+
Sbjct: 289 AGSWSAALTDCAKWLNGVNRGARYEGAYDNAPYIGSCQPLLDISQWS--DEHKTDTRRYI 346
Query: 302 NAQLDVYGRATFGWAYWAHKCE-ANHWSLKWMIENG 336
AQLD + T GW +W+ K E A WS + + NG
Sbjct: 347 EAQLDAF-EYTGGWVFWSWKTENAPEWSFQTLTYNG 381
>pdb|3O6A|A Chain A, F144yF258Y DOUBLE MUTANT OF EXO-Beta-1,3-Glucanase From
Candida Albicans At 2 A
Length = 399
Score = 154 bits (389), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 104/340 (30%), Positives = 161/340 (47%), Gaps = 50/340 (14%)
Query: 39 EYQITNGFGPDKAPQVLQDHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV 98
EY T G + A ++LQ HW ++IT++DFK +S+ G+N VRIP+G+W A P+V
Sbjct: 50 EYHWTQTLGKEAALRILQKHWSTWITEQDFKQISNLGLNFVRIPIGYW-AFQLLDNDPYV 108
Query: 99 GGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVID 158
G + L+ A WA K ++V +DLH APGSQNG ++S RD + N T+ V++
Sbjct: 109 QGQVQYLEKALGWARKNNIRVWIDLHGAPGSQNGYDNSGLRDSYNFQNGDNTQVTLNVLN 168
Query: 159 FLAARYANRP---SLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRL 215
+ +Y + IEL+NEPL P + +D LK ++ GY+++R+ S VI+ +
Sbjct: 169 TIFKKYGGNEYSDVVIGIELLNEPLGPVLNMDKLKQFFLDGYNSLRQTGSVTPVIIHDAF 228
Query: 216 GPADH-KELLSFASGLSRVVIDVHYYNLFSNNFNGLNVQQNIDYVNN------------- 261
+ L+ A G VV+D H+Y ++S N+ +I N
Sbjct: 229 QVFGYWNNFLTVAEGQWNVVVDHHHYQVYSGGELSRNINDHISVACNWGWDAKKESHWNV 288
Query: 262 ------------------------QRASDLGAVTTSNGPLTFVGEWTCEWNVKDASKQDY 297
+ A D S PL + +W+ D K D
Sbjct: 289 AGEWSAALTDCAKWLNGVNRGARYEGAYDNAPYIGSCQPLLDISQWS------DEHKTDT 342
Query: 298 QRFANAQLDVYGRATFGWAYWAHKCE-ANHWSLKWMIENG 336
+R+ AQLD + T GW +W+ K E A WS + + NG
Sbjct: 343 RRYIEAQLDAF-EYTGGWVFWSWKTENAPEWSFQTLTYNG 381
>pdb|2PF0|A Chain A, F258i Mutant Of Exo-B-(1,3)-Glucanase From Candida
Albicans At 1.9 A
Length = 400
Score = 152 bits (385), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 104/340 (30%), Positives = 160/340 (47%), Gaps = 50/340 (14%)
Query: 39 EYQITNGFGPDKAPQVLQDHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV 98
EY T G + A ++LQ HW ++IT++DFK +S+ G+N VRIP+G+W A P+V
Sbjct: 51 EYHWTQTLGKEAALRILQKHWSTWITEQDFKQISNLGLNFVRIPIGYW-AFQLLDNDPYV 109
Query: 99 GGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVID 158
G + L+ A WA K ++V +DLH APGSQNG ++S RD + N T+ V++
Sbjct: 110 QGQVQYLEKALGWARKNNIRVWIDLHGAPGSQNGFDNSGLRDSYNFQNGDNTQVTLNVLN 169
Query: 159 FLAARYANRP---SLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRL 215
+ +Y + IEL+NEPL P + +D LK ++ GY+++R+ S VI+ +
Sbjct: 170 TIFKKYGGNEYSDVVIGIELLNEPLGPVLNMDKLKQFFLDGYNSLRQTGSVTPVIIHDAF 229
Query: 216 GPADH-KELLSFASGLSRVVIDVHYYNLFSNNFNGLNVQQNIDYVNN------------- 261
+ L+ A G VV+D H+Y + S N+ +I N
Sbjct: 230 QVFGYWNNFLTVAEGQWNVVVDHHHYQVISGGELSRNINDHISVACNWGWDAKKESHWNV 289
Query: 262 ------------------------QRASDLGAVTTSNGPLTFVGEWTCEWNVKDASKQDY 297
+ A D S PL + +W+ D K D
Sbjct: 290 AGEWSAALTDCAKWLNGVNRGARYEGAYDNAPYIGSCQPLLDISQWS------DEHKTDT 343
Query: 298 QRFANAQLDVYGRATFGWAYWAHKCE-ANHWSLKWMIENG 336
+R+ AQLD + T GW +W+ K E A WS + + NG
Sbjct: 344 RRYIEAQLDAF-EYTGGWVFWSWKTENAPEWSFQTLTYNG 382
>pdb|1H4P|A Chain A, Crystal Structure Of Exo-1,3-Beta Glucanse From
Saccharomyces Cerevisiae
pdb|1H4P|B Chain B, Crystal Structure Of Exo-1,3-Beta Glucanse From
Saccharomyces Cerevisiae
Length = 408
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 100/343 (29%), Positives = 164/343 (47%), Gaps = 49/343 (14%)
Query: 39 EYQITNGFGPDKAPQVLQDHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV 98
EY G D A LQ HW ++ ++DF ++S G N VRIP+G+W A P+V
Sbjct: 50 EYHFCQYLGKDLAKSRLQSHWSTFYQEQDFANIASQGFNLVRIPIGYW-AFQILDDDPYV 108
Query: 99 GG-SSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVI 157
G LD A WA +KV VDLH A GSQNG ++S RD ++ DSN+A T+ V+
Sbjct: 109 SGLQESYLDQAIGWARNNSLKVWVDLHGAAGSQNGFDNSGLRDSYKFLEDSNLAVTINVL 168
Query: 158 DFLAARYANRPSL---AAIELINEPLAPGVALDTLKSYYKA-GYDAVR-KYTSTAYVIMS 212
+++ +Y+ L IELINEPL P + +D +K+ Y A Y+ +R S +I+
Sbjct: 169 NYILKKYSAEEYLDIVIGIELINEPLGPVLDMDKMKNDYLAPAYEYLRNNIKSDQVIIIH 228
Query: 213 NRLGPADH-KELLSFASGLSRVVIDVHYYNLFSNNFNGLNVQQNID-------------- 257
+ P ++ + ++ G V ID H+Y +F+++ ++ ++I
Sbjct: 229 DAFQPYNYWDDFMTENDGYWGVTIDHHHYQVFASDQLERSIDEHIKVACEWGTGVLNESH 288
Query: 258 -YVNNQRASDL-----------------GAVTTSNGPLTFVGEWTCEWNV-----KDASK 294
V + A+ L G+ + +++G +C N D K
Sbjct: 289 WIVCGEFAAALTDCIKWLNSVGFGARYDGSWVNGDQTSSYIG--SCANNDDIAYWSDERK 346
Query: 295 QDYQRFANAQLDVYGRATFGWAYWAHKCEAN-HWSLKWMIENG 336
++ +R+ AQLD + GW W +K E++ W + ++ NG
Sbjct: 347 ENTRRYVEAQLDAF-EMRGGWIIWCYKTESSLEWDAQRLMFNG 388
>pdb|1CEC|A Chain A, A Common Protein Fold And Similar Active Site In Two
Distinct Families Of Beta-Glycanases
Length = 343
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 92/197 (46%), Gaps = 24/197 (12%)
Query: 56 QDHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKY 115
++H+D++IT++D + ++ G + VR+P + I + +D +W +KY
Sbjct: 22 KEHFDTFITEKDIETIAEAGFDHVRLPFDYPIIESDDNVGEYKEDGLSYIDRCLEWCKKY 81
Query: 116 GVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADT-VAVIDFLAARYANRPSLAAIE 174
+ +++D+H APG + + ++T + D N V + FLA RY N A E
Sbjct: 82 NLGLVLDMHHAPGYRFQDFKTSTL-----FEDPNQQKRFVDIWRFLAKRYINEREHIAFE 136
Query: 175 LINEPLAP------GVALDTLKSYYKAGYDAVRKYTSTA--YVIMSNRLGPADHKELLSF 226
L+NE + P + L+ +K A+R+ ST Y+ +N P + K L
Sbjct: 137 LLNEVVEPDSTRWNKLMLECIK--------AIREIDSTMWLYIGGNNYNSPDELKNLADI 188
Query: 227 ASGLSRVVIDVHYYNLF 243
+V + H+YN F
Sbjct: 189 DDDY--IVYNFHFYNPF 203
>pdb|1CEN|A Chain A, Cellulase (Celc) Mutant With Glu 140 Replaced By Gln
Complexed With Cellohexaose
pdb|1CEO|A Chain A, Cellulase (Celc) Mutant With Glu 140 Replaced By Gln
Length = 343
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 92/197 (46%), Gaps = 24/197 (12%)
Query: 56 QDHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKY 115
++H+D++IT++D + ++ G + VR+P + I + +D +W +KY
Sbjct: 22 KEHFDTFITEKDIETIAEAGFDHVRLPFDYPIIESDDNVGEYKEDGLSYIDRCLEWCKKY 81
Query: 116 GVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADT-VAVIDFLAARYANRPSLAAIE 174
+ +++D+H APG + + ++T + D N V + FLA RY N A E
Sbjct: 82 NLGLVLDMHHAPGYRFQDFKTSTL-----FEDPNQQKRFVDIWRFLAKRYINEREHIAFE 136
Query: 175 LINEPLAP------GVALDTLKSYYKAGYDAVRKYTSTA--YVIMSNRLGPADHKELLSF 226
L+N+ + P + L+ +K A+R+ ST Y+ +N P + K L
Sbjct: 137 LLNQVVEPDSTRWNKLMLECIK--------AIREIDSTMWLYIGGNNYNSPDELKNLADI 188
Query: 227 ASGLSRVVIDVHYYNLF 243
+V + H+YN F
Sbjct: 189 DDDY--IVYNFHFYNPF 203
>pdb|3AZR|A Chain A, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellobiose
pdb|3AZR|B Chain B, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellobiose
pdb|3AZS|A Chain A, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Mannotriose
pdb|3AZS|B Chain B, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Mannotriose
pdb|3AZT|A Chain A, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellotetraose
pdb|3AZT|B Chain B, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellotetraose
pdb|3AZT|C Chain C, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellotetraose
pdb|3AZT|D Chain D, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellotetraose
Length = 317
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 75/194 (38%), Gaps = 19/194 (9%)
Query: 59 WDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVK 118
W I DE F + G + VRIP+ W PP + K +D + A K G+
Sbjct: 30 WGVVIKDEFFDIIKEAGFSHVRIPIRWSTHAYAFPPYKIMDRFFKRVDEVINGALKRGLA 89
Query: 119 VIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINE 178
V++++H N E R +A+ +A RY + P E++NE
Sbjct: 90 VVINIHHYEELMNDPEEHKER-------------FLALWKQIADRYKDYPETLFFEILNE 136
Query: 179 P---LAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRLGPADHKELLSFASGLSRVVI 235
P L P + L+ K +K+T +I + G E LS ++
Sbjct: 137 PHGNLTPEKWNELLEEALKVIRSIDKKHT---IIIGTAEWGGISALEKLSVPKWEKNSIV 193
Query: 236 DVHYYNLFSNNFNG 249
+HYYN F G
Sbjct: 194 TIHYYNPFEFTHQG 207
>pdb|3MMU|A Chain A, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|B Chain B, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|C Chain C, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|D Chain D, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|E Chain E, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|F Chain F, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|G Chain G, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|H Chain H, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMW|A Chain A, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMW|B Chain B, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMW|C Chain C, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMW|D Chain D, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3AMC|A Chain A, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And DimerAU
pdb|3AMC|B Chain B, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And DimerAU
pdb|3AMD|A Chain A, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And TetramerAU
pdb|3AMD|B Chain B, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And TetramerAU
pdb|3AMD|C Chain C, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And TetramerAU
pdb|3AMD|D Chain D, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And TetramerAU
Length = 317
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 75/194 (38%), Gaps = 19/194 (9%)
Query: 59 WDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVK 118
W I DE F + G + VRIP+ W PP + K +D + A K G+
Sbjct: 30 WGVVIKDEFFDIIKEAGFSHVRIPIRWSTHAYAFPPYKIMDRFFKRVDEVINGALKRGLA 89
Query: 119 VIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINE 178
V++++H N E R +A+ +A RY + P E++NE
Sbjct: 90 VVINIHHYEELMNDPEEHKER-------------FLALWKQIADRYKDYPETLFFEILNE 136
Query: 179 P---LAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRLGPADHKELLSFASGLSRVVI 235
P L P + L+ K +K+T +I + G E LS ++
Sbjct: 137 PHGNLTPEKWNELLEEALKVIRSIDKKHT---IIIGTAEWGGISALEKLSVPKWEKNSIV 193
Query: 236 DVHYYNLFSNNFNG 249
+HYYN F G
Sbjct: 194 TIHYYNPFEFTHQG 207
>pdb|3AMG|A Chain A, Crystal Structures Of Thermotoga Maritima Cel5a In Complex
With Cellobiose Substrate, Mutant Form
pdb|3AMG|B Chain B, Crystal Structures Of Thermotoga Maritima Cel5a In Complex
With Cellobiose Substrate, Mutant Form
Length = 317
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 74/194 (38%), Gaps = 19/194 (9%)
Query: 59 WDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVK 118
W I DE F + G + VRIP+ W PP + K +D + A K G+
Sbjct: 30 WGVVIKDEFFDIIKEAGFSHVRIPIRWSTHAYAFPPYKIMDRFFKRVDEVINGALKRGLA 89
Query: 119 VIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINE 178
V++++H N E R +A+ +A RY + P E++N
Sbjct: 90 VVINIHHYEELMNDPEEHKER-------------FLALWKQIADRYKDYPETLFFEILNA 136
Query: 179 P---LAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRLGPADHKELLSFASGLSRVVI 235
P L P + L+ K +K+T +I + G E LS ++
Sbjct: 137 PHGNLTPEKWNELLEEALKVIRSIDKKHT---IIIGTAEWGGISALEKLSVPKWEKNSIV 193
Query: 236 DVHYYNLFSNNFNG 249
+HYYN F G
Sbjct: 194 TIHYYNPFEFTHQG 207
>pdb|3AOF|A Chain A, Crystal Structures Of Thermotoga Maritima Cel5a In Complex
With Mannotriose Substrate
pdb|3AOF|B Chain B, Crystal Structures Of Thermotoga Maritima Cel5a In Complex
With Mannotriose Substrate
Length = 317
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 74/194 (38%), Gaps = 19/194 (9%)
Query: 59 WDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVK 118
W I DE F + G + VRIP+ W PP + K +D + A K G+
Sbjct: 30 WGVVIKDEFFDIIKEAGFSHVRIPIRWSTHAYAFPPYKIMDRFFKRVDEVINGALKRGLA 89
Query: 119 VIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINE 178
V++++H N E R +A+ +A RY + P E++N
Sbjct: 90 VVINIHHYEELMNDPEEHKER-------------FLALWKQIADRYKDYPETLFFEILNA 136
Query: 179 P---LAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRLGPADHKELLSFASGLSRVVI 235
P L P + L+ K +K+T +I + G E LS ++
Sbjct: 137 PHGNLTPEKWNELLEEALKVIRSIDKKHT---IIIGTAEWGGISALEKLSVPKWEKNSIV 193
Query: 236 DVHYYNLFSNNFNG 249
+HYYN F G
Sbjct: 194 TIHYYNPFEFTHQG 207
>pdb|1VJZ|A Chain A, Crystal Structure Of Endoglucanase (Tm1752) From
Thermotoga Maritima At 2.05 A Resolution
Length = 341
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 62/152 (40%), Gaps = 8/152 (5%)
Query: 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 124
+EDF + + N VRIP + +D P + +D W EKYG+ + + LH
Sbjct: 39 EEDFLWXAQWDFNFVRIPXCHLLWSDRGNPFIIREDFFEKIDRVIFWGEKYGIHICISLH 98
Query: 125 AAPGSQNGNEHSATRDGFQEWGDSNVADT-VAVIDFLAARYANRPSL-AAIELINEPLAP 182
APG E + W D + + F+A RY S + LINEP P
Sbjct: 99 RAPGYSVNKE---VEEKTNLWKDETAQEAFIHHWSFIARRYKGISSTHLSFNLINEPPFP 155
Query: 183 GVALDTLK---SYYKAGYDAVRKYTSTAYVIM 211
+ +++ S K +RK +I+
Sbjct: 156 DPQIXSVEDHNSLIKRTITEIRKIDPERLIII 187
>pdb|1QNO|A Chain A, The 3-d Structure Of A Trichoderma Reesei B-mannanase From
Glycoside Hydrolase Family 5
pdb|1QNP|A Chain A, The 3-d Structure Of A Trichoderma Reesei B-mannanase From
Glycoside Hydrolase Family 5
pdb|1QNQ|A Chain A, The 3-d Structure Of A Trichoderma Reesei B-mannanase From
Glycoside Hydrolase Family 5
pdb|1QNR|A Chain A, The 3-d Structure Of A Trichoderma Reesei B-mannanase From
Glycoside Hydrolase Family 5
pdb|1QNS|A Chain A, The 3-d Structure Of A Trichoderma Reesei B-mannanase From
Glycoside Hydrolase Family 5
Length = 344
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 102/252 (40%), Gaps = 50/252 (19%)
Query: 58 HWDSYIT-----DEDFKFLSSNGINAVRIPVGWWIAND----PTP-----PKPFVGGSS- 102
+W S++T D F +SS+G+ VR+ W ND P+P K GS+
Sbjct: 27 YWCSFLTNHADVDSTFSHISSSGLKVVRV----WGFNDVNTQPSPGQIWFQKLSATGSTI 82
Query: 103 -------KVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVA---D 152
+ LD AE++ +K+I+ P N +++ +G + +
Sbjct: 83 NTGADGLQTLDYVVQSAEQHNLKLII-----PFVNNWSDYGGINAYVNAFGGNATTWYTN 137
Query: 153 TVAVIDF------LAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTST 206
T A + + +RYAN ++ A EL NEP G + D + + + V+ S
Sbjct: 138 TAAQTQYRKYVQAVVSRYANSTAIFAWELGNEPRCNGCSTDVIVQWATSVSQYVKSLDSN 197
Query: 207 AYVIMSNR-LG--------PADHKELLSFASGLSRVVIDVHYYNLFSNNFNGLNVQQNID 257
V + + LG P + E FA + +D ++L+ +++ G N
Sbjct: 198 HLVTLGDEGLGLSTGDGAYPYTYGEGTDFAKNVQIKSLDFGTFHLYPDSW-GTNYTWGNG 256
Query: 258 YVNNQRASDLGA 269
++ A+ L A
Sbjct: 257 WIQTHAAACLAA 268
>pdb|4HTY|A Chain A, Crystal Structure Of A Metagenome-Derived Cellulase Cel5a
pdb|4HU0|A Chain A, Crystal Structure Of A Metagenome-Derived Cellulase Cel5a
In Complex With Cellotetraose
Length = 359
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 53/129 (41%), Gaps = 30/129 (23%)
Query: 60 DSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF----VGGSSKVLDNAFDWAEKY 115
D + + F+ + S G N VR+PV P+ + V G ++LD W +
Sbjct: 83 DKRFSKKHFEVIRSWGANVVRVPVH---------PRAWKERGVKGYLELLDQVVAWNNEL 133
Query: 116 GVKVIVDLHA-----APGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSL 170
G+ I+D H+ + QN + H+ + F W ++ RY S+
Sbjct: 134 GIYTILDWHSIGNLKSEXFQNNSYHTTKGETFDFWRR------------VSERYNGINSV 181
Query: 171 AAIELINEP 179
A E+ NEP
Sbjct: 182 AFYEIFNEP 190
>pdb|3RJY|A Chain A, Crystal Structure Of Hyperthermophilic
Endo-Beta-1,4-Glucanase In Complex With Substrate
Length = 320
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 24 DPSVFKLNIVSTLRGEYQITNGFGPDKAPQV-LQDHWDSYITDEDFKFLSSNGINAVRIP 82
D SV ++ +S I +G A + ++ W YI DE FK + G ++VRIP
Sbjct: 2 DQSVSNVDKMSAFEYNKMIGHGINMGNALEAPVEGSWGVYIEDEYFKIIKERGFDSVRIP 61
Query: 83 VGW 85
+ W
Sbjct: 62 IRW 64
>pdb|3VDH|A Chain A, Crystal Structure Of A Putative Beta-1,4-Endoglucanase
CELLULASE From Prevotella Bryantii
pdb|3VDH|B Chain B, Crystal Structure Of A Putative Beta-1,4-Endoglucanase
CELLULASE From Prevotella Bryantii
Length = 353
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 44 NGFGPDKAPQVLQDHWDSYITDEDF-KFLSSNGINAVRIPVGWW 86
NG G K + W T +D FL NG NAVRIPV W+
Sbjct: 33 NGCGTGKPVATYETFWGQPETTQDXXTFLXQNGFNAVRIPVTWY 76
>pdb|3RJX|A Chain A, Crystal Structure Of Hyperthermophilic
Endo-Beta-1,4-Glucanase
Length = 320
Score = 34.7 bits (78), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 55 LQDHWDSYITDEDFKFLSSNGINAVRIPVGW 85
++ W YI DE FK + G ++VRIP+ W
Sbjct: 34 VEGSWGVYIEDEYFKIIKERGFDSVRIPIRW 64
>pdb|3NCO|A Chain A, Crystal Structure Of Fncel5a From F. Nodosum Rt17-B1
pdb|3NCO|B Chain B, Crystal Structure Of Fncel5a From F. Nodosum Rt17-B1
Length = 320
Score = 34.7 bits (78), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 55 LQDHWDSYITDEDFKFLSSNGINAVRIPVGW 85
++ W YI DE FK + G ++VRIP+ W
Sbjct: 34 VEGSWGVYIEDEYFKIIKERGFDSVRIPIRW 64
>pdb|1VRX|A Chain A, Endocellulase E1 From Acidothermus Cellulolyticus Mutant
Y245g
pdb|1VRX|B Chain B, Endocellulase E1 From Acidothermus Cellulolyticus Mutant
Y245g
Length = 358
Score = 34.7 bits (78), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 12/86 (13%)
Query: 101 SSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDF- 159
S +V+D +A + G+++I+D H S SA W S+V++ + D
Sbjct: 93 SLQVMDKIVAYAGQIGLRIILDRHRPDCS----GQSAL------WYTSSVSEATWISDLQ 142
Query: 160 -LAARYANRPSLAAIELINEPLAPGV 184
LA RY P++ +L NEP P
Sbjct: 143 ALAQRYKGNPTVVGFDLHNEPHDPAC 168
>pdb|1ECE|A Chain A, Acidothermus Cellulolyticus Endocellulase E1 Catalytic
Domain In Complex With A Cellotetraose
pdb|1ECE|B Chain B, Acidothermus Cellulolyticus Endocellulase E1 Catalytic
Domain In Complex With A Cellotetraose
Length = 358
Score = 34.7 bits (78), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 12/86 (13%)
Query: 101 SSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDF- 159
S +V+D +A + G+++I+D H S SA W S+V++ + D
Sbjct: 93 SLQVMDKIVAYAGQIGLRIILDRHRPDCS----GQSAL------WYTSSVSEATWISDLQ 142
Query: 160 -LAARYANRPSLAAIELINEPLAPGV 184
LA RY P++ +L NEP P
Sbjct: 143 ALAQRYKGNPTVVGFDLHNEPHDPAC 168
>pdb|3W0K|A Chain A, Crystal Structure Of A Glycoside Hydrolase
pdb|3W0K|B Chain B, Crystal Structure Of A Glycoside Hydrolase
Length = 330
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 48/115 (41%), Gaps = 11/115 (9%)
Query: 70 FLSSNGINAVRIPVGW--WIAN-DPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA 126
FL+ G N VRIPV + W N D P V + +D + + ++LH A
Sbjct: 30 FLAETGFNFVRIPVDYRFWTRNFDYFNPDKKV---FEYIDLYLRECSARNIHMCLNLHRA 86
Query: 127 PGSQNGNEHSATRDGFQEWGDSNVADT-VAVIDFLAARYANRPS-LAAIELINEP 179
PG N + RD W D D V + A RY S + +L+NEP
Sbjct: 87 PGYCI-NRNDIERDNL--WLDKRAQDGFVYQWELFAKRYKGVSSKFLSFDLVNEP 138
>pdb|3K46|A Chain A, Crystal Structure Of Full-Length E. Coli
Beta-Glucuronidase
pdb|3K46|B Chain B, Crystal Structure Of Full-Length E. Coli
Beta-Glucuronidase
pdb|3K4D|A Chain A, Crystal Structure Of E. Coli Beta-Glucuronidase With The
Glucaro-D- Lactam Inhibitor Bound
pdb|3K4D|B Chain B, Crystal Structure Of E. Coli Beta-Glucuronidase With The
Glucaro-D- Lactam Inhibitor Bound
Length = 605
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 53/128 (41%), Gaps = 13/128 (10%)
Query: 106 DNAFDWAEKYGVKVI-------VDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVID 158
+ DWA+++G+ VI +L G + GN+ G++ A A+ +
Sbjct: 337 EEMLDWADEHGIVVIDETAAVGFNLSLGIGFEAGNKPKELYSEEAVNGETQQAHLQAIKE 396
Query: 159 FLAARYANRPSLAAIELINEP-LAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRLGP 217
L AR N PS+ + NEP P A + Y+ +A RK T + N +
Sbjct: 397 -LIARDKNHPSVVMWSIANEPDTRPQGA----REYFAPLAEATRKLDPTRPITCVNVMFC 451
Query: 218 ADHKELLS 225
H + +S
Sbjct: 452 DAHTDTIS 459
>pdb|1HQS|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Bacillus Subtilis
pdb|1HQS|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Bacillus Subtilis
Length = 423
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 10/71 (14%)
Query: 76 INAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEH 135
+N +R P I P + G+S+++ A D+A ++G K + +H GN
Sbjct: 176 VNKIRFPETSGIGIKPVSEE----GTSRLVRAAIDYAIEHGRKSVTLVH------KGNIM 225
Query: 136 SATRDGFQEWG 146
T F+ WG
Sbjct: 226 KFTEGAFKNWG 236
>pdb|3GNO|A Chain A, Crystal Structure Of A Rice Os3bglu6 Beta-glucosidase
pdb|3GNP|A Chain A, Crystal Structure Of A Rice Os3bglu6 Beta-Glucosidase With
Octyl-Beta- D-Thio-Glucoside
pdb|3GNR|A Chain A, Crystal Structure Of A Rice Os3bglu6 Beta-glucosidase With
Covalently Bound 2-deoxy-2-fluoroglucoside To The
Catalytic Nucleophile E396
Length = 488
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 41/199 (20%), Positives = 73/199 (36%), Gaps = 31/199 (15%)
Query: 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 124
+ED + ++ G++A R + W + + G +V D K ++D
Sbjct: 73 EEDIQLMADMGMDAYRFSIAW--------SRIYPNGVGQVNQAGIDHYNK-----LIDAL 119
Query: 125 AAPGSQ------NGNEHSATRDGFQEWGDSNVADTVAVIDFLAAR----------YANRP 168
A G Q + + A D ++ W D + D A R N P
Sbjct: 120 LAKGIQPYVTLYHWDLPQALEDKYKGWLDRQIVDDFAAYAETCFREFGDRVKHWITLNEP 179
Query: 169 SLAAIELINEPL-APGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRLGPADHK-ELLSF 226
AI+ + L APG L Y KAG Y + I+++ + ++ + +
Sbjct: 180 HTVAIQGYDAGLQAPGRCSVLLHLYCKAGNSGTEPYVVAHHFILAHAAAASIYRTKYKAT 239
Query: 227 ASGLSRVVIDVHYYNLFSN 245
+G + DV ++ SN
Sbjct: 240 QNGQLGIAFDVMWFEPMSN 258
>pdb|3LPF|A Chain A, Structure Of E. Coli Beta-Glucuronidase Bound With A
Novel, Potent Inhibitor
1-((6,7-Dimethyl-2-Oxo-1,
2-Dihydroquinolin-3-Yl)methyl)-1-
(2-Hydroxyethyl)-3-(3-Methoxyphenyl)thiourea
pdb|3LPF|B Chain B, Structure Of E. Coli Beta-Glucuronidase Bound With A
Novel, Potent Inhibitor
1-((6,7-Dimethyl-2-Oxo-1,
2-Dihydroquinolin-3-Yl)methyl)-1-
(2-Hydroxyethyl)-3-(3-Methoxyphenyl)thiourea
pdb|3LPG|A Chain A, Structure Of E. Coli Beta-Glucuronidase Bound With A
Novel, Potent Inhibitor
3-(2-Fluorophenyl)-1-(2-Hydroxyethyl)-1-((6-Methyl-2-
Oxo-1, 2-Dihydroquinolin-3-Yl)methyl)urea
pdb|3LPG|B Chain B, Structure Of E. Coli Beta-Glucuronidase Bound With A
Novel, Potent Inhibitor
3-(2-Fluorophenyl)-1-(2-Hydroxyethyl)-1-((6-Methyl-2-
Oxo-1, 2-Dihydroquinolin-3-Yl)methyl)urea
Length = 605
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 13/128 (10%)
Query: 106 DNAFDWAEKYGVKVI-------VDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVID 158
+ DWA+++G+ VI +L G + GN+ G++ A A+ +
Sbjct: 337 EEXLDWADEHGIVVIDETAAVGFNLSLGIGFEAGNKPKELYSEEAVNGETQQAHLQAIKE 396
Query: 159 FLAARYANRPSLAAIELINEP-LAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRLGP 217
L AR N PS+ + NEP P A + Y+ +A RK T + N
Sbjct: 397 -LIARDKNHPSVVXWSIANEPDTRPQGA----REYFAPLAEATRKLDPTRPITCVNVXFC 451
Query: 218 ADHKELLS 225
H + +S
Sbjct: 452 DAHTDTIS 459
>pdb|3K4A|A Chain A, Crystal Structure Of Selenomethionine Substituted E. Coli
Beta- Glucuronidase
pdb|3K4A|B Chain B, Crystal Structure Of Selenomethionine Substituted E. Coli
Beta- Glucuronidase
Length = 605
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 13/128 (10%)
Query: 106 DNAFDWAEKYGVKVI-------VDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVID 158
+ DWA+++G+ VI +L G + GN+ G++ A A+ +
Sbjct: 337 EEXLDWADEHGIVVIDETAAVGFNLSLGIGFEAGNKPKELYSEEAVNGETQQAHLQAIKE 396
Query: 159 FLAARYANRPSLAAIELINEP-LAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRLGP 217
L AR N PS+ + NEP P A + Y+ +A RK T + N
Sbjct: 397 -LIARDKNHPSVVXWSIANEPDTRPQGA----REYFAPLAEATRKLDPTRPITCVNVXFC 451
Query: 218 ADHKELLS 225
H + +S
Sbjct: 452 DAHTDTIS 459
>pdb|2OSW|A Chain A, Endo-Glycoceramidase Ii From Rhodococcus Sp.
pdb|2OSW|B Chain B, Endo-Glycoceramidase Ii From Rhodococcus Sp.
pdb|2OYK|A Chain A, Endo-Glycoceramidase Ii From Rhodococcus Sp.:
Cellobiose-Like Isofagomine Complex
pdb|2OYK|B Chain B, Endo-Glycoceramidase Ii From Rhodococcus Sp.:
Cellobiose-Like Isofagomine Complex
pdb|2OYL|A Chain A, Endo-Glycoceramidase Ii From Rhodococcus Sp.:
Cellobiose-Like Imidazole Complex
pdb|2OYL|B Chain B, Endo-Glycoceramidase Ii From Rhodococcus Sp.:
Cellobiose-Like Imidazole Complex
pdb|2OYM|A Chain A, Endo-Glycoceramidase Ii From Rhodococcus Sp.:
Five-Membered Iminocyclitol Complex
pdb|2OYM|B Chain B, Endo-Glycoceramidase Ii From Rhodococcus Sp.:
Five-Membered Iminocyclitol Complex
Length = 481
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 11/94 (11%)
Query: 160 LAARYANRPSLAAIELINEPL-----APGVALDTLKSYYKAGYDAVRKYTSTAYVIMS-- 212
+A R+A+ ++ A +L+NEP P L + Y+ DA+R+ +V ++
Sbjct: 206 VADRFADNDAVVAYDLMNEPFGGSLQGPAFEAGPLAAMYQRTTDAIRQVDQDTWVCVAPQ 265
Query: 213 ----NRLGPADHKELLSFASGLSRVVIDVHYYNL 242
N+ P+ ++ +G R+ H Y L
Sbjct: 266 AIGVNQGLPSGLTKIDDPRAGQQRIAYCPHLYPL 299
>pdb|2OSX|A Chain A, Endo-glycoceramidase Ii From Rhodococcus Sp.: Ganglioside
Gm3 Complex
Length = 481
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 11/94 (11%)
Query: 160 LAARYANRPSLAAIELINEPL-----APGVALDTLKSYYKAGYDAVRKYTSTAYVIMS-- 212
+A R+A+ ++ A +L+NEP P L + Y+ DA+R+ +V ++
Sbjct: 206 VADRFADNDAVVAYDLMNEPFGGSLQGPAFEAGPLAAMYQRTTDAIRQVDQDTWVCVAPQ 265
Query: 213 ----NRLGPADHKELLSFASGLSRVVIDVHYYNL 242
N+ P+ ++ +G R+ H Y L
Sbjct: 266 AIGVNQGLPSGLTKIDDPRAGQQRIAYCPHLYPL 299
>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
Length = 434
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 226 FASGLSRVVIDVHYYNLFSNNF--NGLNVQQNIDYVNNQRASDL 267
F + L + VI + YYN+F++ F ++V + + + RA D+
Sbjct: 192 FGNALCKTVIAIDYYNMFTSTFTLTAMSVDRYVAICHPIRALDV 235
>pdb|2JEP|A Chain A, Native Family 5 Xyloglucanase From Paenibacillus Pabuli
pdb|2JEP|B Chain B, Native Family 5 Xyloglucanase From Paenibacillus Pabuli
pdb|2JEQ|A Chain A, Family 5 Xyloglucanase From Paenibacillus Pabuli In
Complex With Ligand
Length = 395
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 43/209 (20%), Positives = 81/209 (38%), Gaps = 43/209 (20%)
Query: 63 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGS-SKVLDNAFDWAEKYGVKVIV 121
+T E K + + G ++RIPV + + N + P + + + D+A G+ VI+
Sbjct: 70 VTPELIKKVKAAGFKSIRIPVSY-LNNIGSAPNYTINAAWLNRIQQVVDYAYNEGLYVII 128
Query: 122 DLHAAPGSQ--------NGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAI 173
++H + NG +A ++ +++ V +A +++N
Sbjct: 129 NIHGDGYNSVQGGWLLVNGGNQTAIKEKYKK-----------VWQQIATKFSNYNDRLIF 177
Query: 174 ELINEPL-----APGVALDT-LKSYYKAGYDAVRKY---------------TSTAYVIMS 212
E +NE P A T L +Y + D VR+ T+ Y + +
Sbjct: 178 ESMNEVFDGNYGNPNSAYYTNLNAYNQIFVDTVRQTGGNNNARWLLVPGWNTNIDYTVGN 237
Query: 213 NRLG-PADHKELLSFASGLSRVVIDVHYY 240
P D+ + S R++I HYY
Sbjct: 238 YGFTLPTDNYRSSAIPSSQKRIMISAHYY 266
>pdb|4HI7|A Chain A, Crystal Structure Of Glutathione Transferase Homolog From
Drosophilia Mojavensis, Target Efi-501819, With Bound
Glutathione
pdb|4HI7|B Chain B, Crystal Structure Of Glutathione Transferase Homolog From
Drosophilia Mojavensis, Target Efi-501819, With Bound
Glutathione
Length = 228
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 17/104 (16%)
Query: 82 PVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDL-----HAAPGSQNGNEHS 136
P+ + I D +PP V + L +D+ IV+L H+ + +H+
Sbjct: 4 PILYGI--DASPPVRAVKLTLAALQLPYDYK-------IVNLMNKEQHSEEYLKKNPQHT 54
Query: 137 ATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPL 180
E GD+N+AD+ A++ +L ++Y SL +L+ L
Sbjct: 55 VP---LLEDGDANIADSHAIMAYLVSKYGKDDSLYPKDLVKRAL 95
>pdb|3LMZ|A Chain A, Crystal Structure Of Putative Sugar Isomerase.
(Yp_001305105.1) From Parabacteroides Distasonis Atcc
8503 At 1.44 A Resolution
Length = 257
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 96 PFVGGSSKVLDNAFDWAEKYGVKVIV 121
P S + +D AFD+A++ GVK+IV
Sbjct: 82 PIYXKSEEEIDRAFDYAKRVGVKLIV 107
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,316,364
Number of Sequences: 62578
Number of extensions: 491943
Number of successful extensions: 1175
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1102
Number of HSP's gapped (non-prelim): 53
length of query: 341
length of database: 14,973,337
effective HSP length: 100
effective length of query: 241
effective length of database: 8,715,537
effective search space: 2100444417
effective search space used: 2100444417
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)