Query 019395
Match_columns 341
No_of_seqs 210 out of 2227
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 09:07:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019395.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019395hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00150 Cellulase: Cellulase 100.0 1.2E-36 2.7E-41 277.1 21.8 248 63-324 22-281 (281)
2 COG2730 BglC Endoglucanase [Ca 100.0 1.1E-28 2.4E-33 235.2 17.2 301 35-339 46-382 (407)
3 TIGR03356 BGL beta-galactosida 99.9 5.2E-20 1.1E-24 176.3 21.0 183 9-211 8-214 (427)
4 PF00232 Glyco_hydro_1: Glycos 99.8 2.1E-19 4.6E-24 174.1 6.6 183 9-211 12-219 (455)
5 COG2723 BglB Beta-glucosidase/ 99.8 4.7E-18 1E-22 159.6 13.4 157 9-181 11-171 (460)
6 PF07745 Glyco_hydro_53: Glyco 99.7 1.5E-16 3.2E-21 146.0 19.2 227 64-319 26-295 (332)
7 PRK13511 6-phospho-beta-galact 99.7 1.6E-16 3.4E-21 154.0 14.7 148 9-181 12-163 (469)
8 TIGR01233 lacG 6-phospho-beta- 99.7 2.3E-16 4.9E-21 152.6 15.3 148 9-181 11-162 (467)
9 PRK15014 6-phospho-beta-glucos 99.7 6.9E-17 1.5E-21 156.3 10.3 157 9-180 13-180 (477)
10 PLN02849 beta-glucosidase 99.7 1.1E-16 2.3E-21 155.6 10.7 150 9-181 37-190 (503)
11 PRK09852 cryptic 6-phospho-bet 99.7 8.9E-17 1.9E-21 155.2 10.0 159 9-181 11-183 (474)
12 PLN02814 beta-glucosidase 99.7 1.4E-16 3E-21 154.8 10.2 150 9-181 35-188 (504)
13 PLN02998 beta-glucosidase 99.7 1.6E-16 3.4E-21 154.2 10.0 152 9-181 38-193 (497)
14 PRK09589 celA 6-phospho-beta-g 99.7 2E-16 4.4E-21 153.1 10.7 159 9-181 11-179 (476)
15 PF02449 Glyco_hydro_42: Beta- 99.7 3.4E-15 7.5E-20 141.6 18.7 248 57-323 5-338 (374)
16 PRK09593 arb 6-phospho-beta-gl 99.7 3E-16 6.4E-21 152.1 10.7 159 9-181 13-185 (478)
17 PRK10150 beta-D-glucuronidase; 99.6 2.3E-13 5E-18 136.8 23.0 225 65-322 316-557 (604)
18 COG3867 Arabinogalactan endo-1 99.6 3.2E-13 7E-18 118.3 20.7 230 64-319 65-341 (403)
19 KOG0626 Beta-glucosidase, lact 99.5 3.4E-14 7.4E-19 134.8 9.0 156 9-181 44-204 (524)
20 COG3934 Endo-beta-mannanase [C 99.5 5.2E-14 1.1E-18 130.5 9.7 259 51-323 15-281 (587)
21 PF02836 Glyco_hydro_2_C: Glyc 99.3 2.2E-10 4.9E-15 105.4 21.0 120 65-213 39-158 (298)
22 smart00633 Glyco_10 Glycosyl h 99.2 3E-09 6.5E-14 95.6 20.5 204 87-327 4-232 (254)
23 PF01229 Glyco_hydro_39: Glyco 99.1 6.3E-10 1.4E-14 109.1 12.3 259 50-321 32-323 (486)
24 PRK10340 ebgA cryptic beta-D-g 98.9 6.2E-08 1.3E-12 102.5 18.9 115 65-213 358-476 (1021)
25 PF12876 Cellulase-like: Sugar 98.9 2.1E-09 4.6E-14 80.3 5.7 78 160-240 1-88 (88)
26 PF03198 Glyco_hydro_72: Gluca 98.9 1.4E-07 3E-12 85.0 18.3 218 65-324 56-283 (314)
27 PRK09525 lacZ beta-D-galactosi 98.9 1.2E-07 2.5E-12 100.3 20.6 115 65-213 374-489 (1027)
28 PF13204 DUF4038: Protein of u 98.9 5.9E-08 1.3E-12 88.7 15.1 137 65-214 33-187 (289)
29 PF01301 Glyco_hydro_35: Glyco 98.7 1.2E-07 2.6E-12 87.7 11.9 136 65-212 27-179 (319)
30 PF14488 DUF4434: Domain of un 98.5 7.1E-06 1.5E-10 68.6 15.6 139 57-214 20-162 (166)
31 PF00331 Glyco_hydro_10: Glyco 98.4 1.4E-05 3.1E-10 74.2 16.5 226 67-322 26-287 (320)
32 COG1874 LacA Beta-galactosidas 98.4 2.9E-06 6.4E-11 84.6 12.3 138 63-204 31-190 (673)
33 PF11790 Glyco_hydro_cc: Glyco 98.1 8.6E-05 1.9E-09 66.0 14.3 130 173-320 69-211 (239)
34 COG3693 XynA Beta-1,4-xylanase 98.1 0.00058 1.3E-08 61.8 18.7 161 102-286 81-261 (345)
35 PF14587 Glyco_hydr_30_2: O-Gl 98.1 0.00068 1.5E-08 63.3 19.6 208 108-330 109-363 (384)
36 PLN03059 beta-galactosidase; P 98.0 0.00013 2.7E-09 74.5 14.8 144 57-213 59-222 (840)
37 COG3250 LacZ Beta-galactosidas 98.0 7.6E-05 1.6E-09 76.7 12.0 109 65-212 324-432 (808)
38 COG5309 Exo-beta-1,3-glucanase 97.7 0.0074 1.6E-07 53.2 17.9 209 65-319 66-280 (305)
39 PF02055 Glyco_hydro_30: O-Gly 97.5 0.0065 1.4E-07 59.6 17.6 231 72-321 110-380 (496)
40 TIGR01515 branching_enzym alph 97.3 0.01 2.3E-07 60.1 16.3 147 65-213 160-349 (613)
41 PF13200 DUF4015: Putative gly 97.2 0.054 1.2E-06 49.9 17.8 139 65-206 16-189 (316)
42 KOG2233 Alpha-N-acetylglucosam 97.1 0.012 2.6E-07 56.0 13.1 152 59-212 77-281 (666)
43 PLN02161 beta-amylase 97.1 0.012 2.6E-07 56.7 12.8 136 57-212 114-261 (531)
44 PLN02803 beta-amylase 96.9 0.018 4E-07 55.7 12.8 130 65-212 110-251 (548)
45 COG5520 O-Glycosyl hydrolase [ 96.9 0.081 1.8E-06 48.7 16.2 252 38-323 42-312 (433)
46 PRK12313 glycogen branching en 96.9 0.055 1.2E-06 55.2 16.9 147 65-213 174-362 (633)
47 TIGR02402 trehalose_TreZ malto 96.8 0.049 1.1E-06 54.4 15.6 133 66-206 115-271 (542)
48 PLN00197 beta-amylase; Provisi 96.7 0.015 3.2E-07 56.5 10.8 59 65-127 130-190 (573)
49 PLN02905 beta-amylase 96.7 0.024 5.2E-07 55.8 11.7 121 65-204 289-422 (702)
50 PF03662 Glyco_hydro_79n: Glyc 96.7 0.0047 1E-07 56.8 6.6 174 102-288 108-298 (319)
51 PLN02801 beta-amylase 96.6 0.021 4.6E-07 54.9 10.8 113 65-181 40-189 (517)
52 PRK05402 glycogen branching en 96.6 0.11 2.3E-06 53.9 16.8 146 65-213 269-458 (726)
53 TIGR02104 pulA_typeI pullulana 96.6 0.085 1.8E-06 53.5 15.6 136 66-212 168-348 (605)
54 PF05089 NAGLU: Alpha-N-acetyl 96.6 0.022 4.9E-07 52.4 10.2 174 59-238 18-250 (333)
55 PLN02705 beta-amylase 96.5 0.023 5E-07 55.7 10.6 59 65-127 271-331 (681)
56 smart00642 Aamy Alpha-amylase 96.5 0.011 2.3E-07 49.6 7.4 60 65-124 22-91 (166)
57 PLN02447 1,4-alpha-glucan-bran 96.5 0.11 2.3E-06 53.5 15.8 147 65-213 254-446 (758)
58 TIGR02100 glgX_debranch glycog 96.5 0.064 1.4E-06 55.0 14.2 56 67-123 189-265 (688)
59 PLN02960 alpha-amylase 96.5 0.12 2.6E-06 53.6 16.0 149 64-213 419-611 (897)
60 PF01373 Glyco_hydro_14: Glyco 96.5 0.019 4E-07 54.2 9.3 127 65-211 19-150 (402)
61 TIGR02102 pullulan_Gpos pullul 96.3 0.17 3.7E-06 54.3 16.6 102 102-215 554-673 (1111)
62 PRK03705 glycogen debranching 96.3 0.13 2.7E-06 52.5 15.0 111 67-180 184-342 (658)
63 PLN02877 alpha-amylase/limit d 96.2 0.2 4.3E-06 52.8 16.1 112 101-216 464-599 (970)
64 PRK14705 glycogen branching en 96.2 0.23 5E-06 53.8 16.7 145 65-212 769-957 (1224)
65 COG1523 PulA Type II secretory 96.1 0.056 1.2E-06 55.0 11.0 63 64-126 202-291 (697)
66 PRK10785 maltodextrin glucosid 96.1 0.26 5.5E-06 50.0 15.7 59 65-123 182-246 (598)
67 PRK12568 glycogen branching en 96.0 0.41 9E-06 49.1 17.0 145 65-212 273-461 (730)
68 KOG0496 Beta-galactosidase [Ca 95.9 0.047 1E-06 54.2 9.5 108 65-180 52-176 (649)
69 KOG2230 Predicted beta-mannosi 95.9 0.093 2E-06 51.2 11.1 150 64-243 359-524 (867)
70 PF14871 GHL6: Hypothetical gl 95.9 0.18 3.9E-06 40.4 11.2 104 65-171 3-129 (132)
71 PRK14510 putative bifunctional 95.9 0.15 3.2E-06 55.7 13.8 136 65-209 190-371 (1221)
72 PF00128 Alpha-amylase: Alpha 95.9 0.018 3.9E-07 52.5 6.1 59 65-123 7-72 (316)
73 PRK14706 glycogen branching en 95.5 0.7 1.5E-05 47.1 16.3 147 65-212 171-357 (639)
74 PF02638 DUF187: Glycosyl hydr 95.4 0.34 7.3E-06 44.9 12.6 147 65-213 22-229 (311)
75 TIGR02103 pullul_strch alpha-1 95.4 0.36 7.8E-06 50.8 14.0 104 101-216 402-528 (898)
76 PF01120 Alpha_L_fucos: Alpha- 95.0 0.43 9.3E-06 44.9 12.2 138 64-210 93-242 (346)
77 COG0296 GlgB 1,4-alpha-glucan 94.4 0.88 1.9E-05 45.8 13.3 143 64-211 167-355 (628)
78 PLN02361 alpha-amylase 94.2 0.19 4.1E-06 48.1 7.9 64 57-123 26-96 (401)
79 KOG0470 1,4-alpha-glucan branc 94.2 0.2 4.4E-06 50.4 8.2 61 63-123 256-331 (757)
80 TIGR02403 trehalose_treC alpha 94.2 0.15 3.3E-06 50.9 7.5 59 65-123 30-95 (543)
81 PRK07379 coproporphyrinogen II 94.1 0.57 1.2E-05 45.0 11.0 122 62-207 112-247 (400)
82 PRK10933 trehalose-6-phosphate 93.6 0.22 4.7E-06 49.9 7.4 59 65-123 36-101 (551)
83 COG0635 HemN Coproporphyrinoge 93.6 0.95 2.1E-05 43.7 11.4 122 61-205 133-266 (416)
84 PRK05628 coproporphyrinogen II 93.5 0.94 2E-05 43.1 11.3 123 61-207 104-240 (375)
85 PRK06294 coproporphyrinogen II 93.3 1.2 2.5E-05 42.4 11.5 123 61-207 99-235 (370)
86 cd06564 GH20_DspB_LnbB-like Gl 93.1 2 4.3E-05 40.1 12.5 135 65-206 20-195 (326)
87 cd02742 GH20_hexosaminidase Be 93.1 4.3 9.2E-05 37.4 14.6 134 65-205 19-185 (303)
88 TIGR02456 treS_nterm trehalose 93.1 0.3 6.6E-06 48.8 7.5 59 65-123 31-96 (539)
89 PRK05799 coproporphyrinogen II 92.9 1.4 3E-05 41.9 11.3 123 61-207 95-231 (374)
90 PRK08208 coproporphyrinogen II 92.7 1.1 2.5E-05 43.4 10.7 122 62-206 138-266 (430)
91 PRK05904 coproporphyrinogen II 92.6 1.9 4.2E-05 40.6 11.8 124 61-208 99-231 (353)
92 PRK09441 cytoplasmic alpha-amy 92.6 0.35 7.6E-06 47.6 7.1 59 65-123 25-101 (479)
93 PRK08599 coproporphyrinogen II 92.5 1.5 3.2E-05 41.8 11.0 123 61-207 96-232 (377)
94 PLN00196 alpha-amylase; Provis 92.3 0.47 1E-05 45.9 7.4 58 65-123 47-112 (428)
95 COG3664 XynB Beta-xylosidase [ 92.2 2.3 4.9E-05 40.3 11.3 226 72-321 15-255 (428)
96 PRK13347 coproporphyrinogen II 91.9 1.5 3.1E-05 43.0 10.4 121 61-205 148-281 (453)
97 PRK09058 coproporphyrinogen II 91.9 2.6 5.6E-05 41.2 12.0 122 62-207 160-296 (449)
98 cd06568 GH20_SpHex_like A subg 91.8 5.4 0.00012 37.2 13.6 131 65-205 21-189 (329)
99 PRK09505 malS alpha-amylase; R 91.7 0.56 1.2E-05 48.1 7.5 59 65-123 233-312 (683)
100 cd06565 GH20_GcnA-like Glycosy 91.7 8.8 0.00019 35.3 14.7 136 65-206 20-180 (301)
101 PRK05660 HemN family oxidoredu 91.6 2.1 4.6E-05 40.8 10.8 123 61-207 103-235 (378)
102 TIGR00539 hemN_rel putative ox 91.5 2.7 6E-05 39.7 11.6 121 61-205 96-226 (360)
103 PRK06582 coproporphyrinogen II 91.4 2.4 5.2E-05 40.6 11.0 124 61-207 107-242 (390)
104 PLN02784 alpha-amylase 91.3 0.73 1.6E-05 47.9 7.7 58 65-123 524-588 (894)
105 PRK09057 coproporphyrinogen II 91.3 2.4 5.2E-05 40.4 10.9 122 61-206 100-234 (380)
106 PRK09249 coproporphyrinogen II 90.9 2.1 4.5E-05 41.9 10.3 120 62-205 148-280 (453)
107 PLN03244 alpha-amylase; Provis 90.8 4.8 0.0001 41.7 12.8 111 101-213 439-586 (872)
108 PF12891 Glyco_hydro_44: Glyco 90.7 0.6 1.3E-05 41.1 5.7 109 102-213 23-179 (239)
109 KOG2566 Beta-glucocerebrosidas 90.7 15 0.00033 34.7 15.5 198 108-323 182-407 (518)
110 TIGR01212 radical SAM protein, 89.6 5.4 0.00012 36.7 11.3 126 61-209 119-257 (302)
111 PRK08446 coproporphyrinogen II 89.5 4.5 9.8E-05 38.1 11.0 122 61-207 94-223 (350)
112 COG1649 Uncharacterized protei 89.4 2.7 5.9E-05 40.2 9.3 145 65-213 67-272 (418)
113 COG0366 AmyA Glycosidases [Car 89.1 0.82 1.8E-05 44.9 6.0 58 66-123 33-97 (505)
114 COG3589 Uncharacterized conser 89.1 0.87 1.9E-05 41.9 5.5 52 65-124 19-70 (360)
115 TIGR02401 trehalose_TreY malto 89.0 1.4 3E-05 45.9 7.6 59 65-123 19-85 (825)
116 PRK08207 coproporphyrinogen II 88.9 5 0.00011 39.6 11.2 123 61-207 265-399 (488)
117 cd06562 GH20_HexA_HexB-like Be 87.6 14 0.00031 34.7 13.0 142 65-207 21-205 (348)
118 PRK14511 maltooligosyl trehalo 87.3 2.1 4.5E-05 45.0 7.6 60 65-124 23-90 (879)
119 cd06563 GH20_chitobiase-like T 87.1 17 0.00037 34.3 13.3 138 65-206 21-220 (357)
120 smart00812 Alpha_L_fucos Alpha 86.7 19 0.00042 34.4 13.3 130 64-207 83-226 (384)
121 TIGR02455 TreS_stutzeri trehal 85.5 3 6.4E-05 42.2 7.4 60 65-124 77-151 (688)
122 PRK08898 coproporphyrinogen II 85.0 11 0.00024 36.1 11.0 123 61-207 118-249 (394)
123 cd06570 GH20_chitobiase-like_1 85.0 17 0.00037 33.6 11.8 58 65-125 21-90 (311)
124 TIGR00538 hemN oxygen-independ 84.5 5.7 0.00012 38.9 8.9 120 62-205 148-280 (455)
125 PRK09856 fructoselysine 3-epim 84.4 16 0.00034 32.8 11.3 122 99-242 86-211 (275)
126 TIGR00542 hxl6Piso_put hexulos 84.3 5.6 0.00012 35.9 8.3 59 65-125 97-155 (279)
127 PRK13210 putative L-xylulose 5 83.2 5.6 0.00012 35.9 7.8 59 65-125 97-155 (284)
128 PRK14507 putative bifunctional 82.9 3.8 8.2E-05 46.1 7.5 60 65-124 761-828 (1693)
129 cd02875 GH18_chitobiase Chitob 82.3 18 0.00039 34.2 11.1 88 107-212 68-157 (358)
130 PF05913 DUF871: Bacterial pro 82.2 2.1 4.5E-05 40.4 4.6 53 65-125 17-69 (357)
131 PRK14565 triosephosphate isome 82.1 35 0.00076 30.2 12.0 134 64-226 74-209 (237)
132 cd07948 DRE_TIM_HCS Saccharomy 81.5 1.9 4E-05 38.9 3.9 63 63-125 72-134 (262)
133 cd02871 GH18_chitinase_D-like 81.5 25 0.00054 32.5 11.5 94 102-211 59-153 (312)
134 PRK13209 L-xylulose 5-phosphat 80.1 8 0.00017 34.9 7.7 59 65-125 102-160 (283)
135 cd02874 GH18_CFLE_spore_hydrol 79.4 17 0.00037 33.4 9.7 90 106-205 48-138 (313)
136 PF10566 Glyco_hydro_97: Glyco 79.4 3.9 8.4E-05 37.0 5.2 50 65-126 109-158 (273)
137 cd07941 DRE_TIM_LeuA3 Desulfob 79.0 14 0.00031 33.4 8.8 60 64-124 80-140 (273)
138 PF01261 AP_endonuc_2: Xylose 78.8 3.2 7E-05 35.2 4.4 63 65-127 74-136 (213)
139 COG3534 AbfA Alpha-L-arabinofu 78.6 68 0.0015 31.2 15.6 159 65-241 52-245 (501)
140 TIGR01211 ELP3 histone acetylt 78.4 18 0.00038 36.1 9.8 62 60-124 201-263 (522)
141 PF14701 hDGE_amylase: glucano 77.6 9 0.0002 36.9 7.3 60 65-124 25-98 (423)
142 COG3623 SgaU Putative L-xylulo 76.7 53 0.0011 29.0 15.0 70 99-181 92-161 (287)
143 TIGR00433 bioB biotin syntheta 76.6 39 0.00084 30.7 11.2 127 62-214 120-249 (296)
144 cd07937 DRE_TIM_PC_TC_5S Pyruv 75.9 14 0.00031 33.4 7.9 48 63-124 92-139 (275)
145 PTZ00333 triosephosphate isome 75.7 49 0.0011 29.7 11.1 56 62-125 76-131 (255)
146 cd07939 DRE_TIM_NifV Streptomy 75.5 3.1 6.8E-05 37.3 3.5 60 64-123 71-130 (259)
147 KOG0471 Alpha-amylase [Carbohy 75.4 5.2 0.00011 40.1 5.4 60 65-124 43-109 (545)
148 cd06545 GH18_3CO4_chitinase Th 75.4 35 0.00075 30.3 10.3 85 102-203 45-131 (253)
149 PF01261 AP_endonuc_2: Xylose 75.0 42 0.00091 28.1 10.4 129 65-212 30-164 (213)
150 PF07488 Glyco_hydro_67M: Glyc 74.8 28 0.0006 31.9 9.1 124 65-204 60-188 (328)
151 PRK05692 hydroxymethylglutaryl 74.1 4.1 8.9E-05 37.2 3.9 61 64-124 81-141 (287)
152 PRK09936 hypothetical protein; 74.1 69 0.0015 29.2 11.5 57 65-128 41-97 (296)
153 TIGR03471 HpnJ hopanoid biosyn 74.0 18 0.00039 35.5 8.7 62 63-127 285-348 (472)
154 TIGR01210 conserved hypothetic 73.9 4.6 0.0001 37.4 4.3 63 61-124 113-176 (313)
155 PF00682 HMGL-like: HMGL-like 73.4 19 0.00041 31.6 8.0 119 64-212 65-187 (237)
156 cd06593 GH31_xylosidase_YicI Y 73.3 75 0.0016 29.1 12.4 59 65-124 27-87 (308)
157 TIGR01531 glyc_debranch glycog 73.1 13 0.00028 41.1 7.7 55 65-123 135-205 (1464)
158 cd07945 DRE_TIM_CMS Leptospira 72.8 3.9 8.5E-05 37.2 3.5 121 64-212 76-197 (280)
159 PF00332 Glyco_hydro_17: Glyco 72.6 29 0.00063 32.1 9.2 106 65-206 16-121 (310)
160 cd06589 GH31 The enzymes of gl 72.4 51 0.0011 29.6 10.6 119 65-212 27-167 (265)
161 TIGR02660 nifV_homocitr homoci 71.5 9.1 0.0002 36.3 5.8 60 64-123 74-133 (365)
162 PLN02746 hydroxymethylglutaryl 70.9 5.2 0.00011 37.6 3.8 61 64-124 123-183 (347)
163 KOG1643 Triosephosphate isomer 70.7 69 0.0015 27.6 12.3 142 64-234 75-230 (247)
164 PF04055 Radical_SAM: Radical 70.6 8 0.00017 31.0 4.6 62 64-128 89-153 (166)
165 TIGR01370 cysRS possible cyste 70.3 92 0.002 28.9 12.1 66 148-215 144-215 (315)
166 PF00728 Glyco_hydro_20: Glyco 70.1 19 0.00041 33.6 7.6 58 65-125 21-95 (351)
167 TIGR02090 LEU1_arch isopropylm 70.0 5.2 0.00011 37.9 3.8 61 64-124 73-133 (363)
168 cd06569 GH20_Sm-chitobiase-lik 69.8 36 0.00079 33.2 9.6 58 65-125 25-119 (445)
169 PRK04161 tagatose 1,6-diphosph 69.8 8.1 0.00018 35.7 4.7 61 64-128 109-169 (329)
170 PF03659 Glyco_hydro_71: Glyco 69.7 44 0.00095 32.0 9.9 50 65-125 20-69 (386)
171 PRK07094 biotin synthase; Prov 69.6 51 0.0011 30.4 10.3 128 63-215 127-258 (323)
172 PRK04302 triosephosphate isome 69.6 76 0.0016 27.6 12.1 108 64-215 74-182 (223)
173 TIGR00542 hxl6Piso_put hexulos 68.7 63 0.0014 29.0 10.5 148 70-242 60-212 (279)
174 cd03174 DRE_TIM_metallolyase D 68.2 6.1 0.00013 35.2 3.7 61 65-125 77-137 (265)
175 cd06542 GH18_EndoS-like Endo-b 67.5 78 0.0017 28.0 10.7 99 101-212 49-151 (255)
176 cd07938 DRE_TIM_HMGL 3-hydroxy 67.2 7.4 0.00016 35.3 4.0 125 64-213 75-200 (274)
177 PRK12399 tagatose 1,6-diphosph 66.5 10 0.00022 35.0 4.7 61 64-128 107-167 (324)
178 cd06547 GH85_ENGase Endo-beta- 66.4 27 0.00058 32.8 7.6 95 107-211 50-146 (339)
179 TIGR01232 lacD tagatose 1,6-di 66.0 9.4 0.0002 35.2 4.3 60 65-128 109-168 (325)
180 cd07944 DRE_TIM_HOA_like 4-hyd 65.6 17 0.00037 32.8 6.0 49 64-126 84-132 (266)
181 PRK11858 aksA trans-homoaconit 65.5 7.7 0.00017 37.0 3.9 60 64-123 77-136 (378)
182 PRK13511 6-phospho-beta-galact 65.5 6.4 0.00014 38.7 3.4 53 276-329 369-432 (469)
183 PF02879 PGM_PMM_II: Phosphogl 65.2 15 0.00033 27.6 4.8 83 101-212 3-91 (104)
184 PF10566 Glyco_hydro_97: Glyco 65.1 21 0.00045 32.4 6.3 122 65-214 35-158 (273)
185 PRK06256 biotin synthase; Vali 65.0 45 0.00097 31.0 9.0 126 63-215 150-279 (336)
186 PLN02998 beta-glucosidase 64.9 6.6 0.00014 38.9 3.4 48 274-321 391-445 (497)
187 PRK09852 cryptic 6-phospho-bet 64.1 8.8 0.00019 37.8 4.1 53 269-321 359-422 (474)
188 PF07555 NAGidase: beta-N-acet 64.0 24 0.00052 32.6 6.7 57 65-125 18-78 (306)
189 COG5016 Pyruvate/oxaloacetate 63.9 21 0.00045 34.0 6.2 55 57-125 93-147 (472)
190 cd07947 DRE_TIM_Re_CS Clostrid 63.0 8.9 0.00019 34.9 3.7 61 63-123 75-135 (279)
191 PLN02814 beta-glucosidase 62.9 6.7 0.00015 38.9 3.1 53 275-328 387-446 (504)
192 cd00019 AP2Ec AP endonuclease 62.5 18 0.00038 32.6 5.6 123 65-212 88-213 (279)
193 PLN02849 beta-glucosidase 62.0 7 0.00015 38.8 3.0 48 274-321 384-440 (503)
194 PRK09997 hydroxypyruvate isome 61.9 18 0.00039 32.2 5.5 59 65-125 88-146 (258)
195 cd00419 Ferrochelatase_C Ferro 61.7 50 0.0011 26.4 7.4 85 115-217 17-103 (135)
196 PRK13210 putative L-xylulose 5 60.8 1.2E+02 0.0027 27.0 10.9 95 68-177 58-155 (284)
197 COG0276 HemH Protoheme ferro-l 60.1 62 0.0013 30.0 8.6 148 57-223 98-275 (320)
198 PRK13209 L-xylulose 5-phosphat 59.5 1.3E+02 0.0029 26.9 11.0 148 69-241 64-216 (283)
199 PRK09589 celA 6-phospho-beta-g 59.2 10 0.00023 37.3 3.7 60 269-329 361-432 (476)
200 PRK15014 6-phospho-beta-glucos 59.0 11 0.00024 37.1 3.8 53 269-321 362-426 (477)
201 PRK09856 fructoselysine 3-epim 58.7 33 0.00071 30.7 6.7 59 65-125 93-151 (275)
202 TIGR03234 OH-pyruv-isom hydrox 58.4 21 0.00045 31.6 5.2 59 65-125 87-145 (254)
203 TIGR01233 lacG 6-phospho-beta- 58.4 8.6 0.00019 37.8 2.9 52 276-328 368-429 (467)
204 cd00311 TIM Triosephosphate is 58.3 1.3E+02 0.0029 26.6 12.1 54 64-125 73-126 (242)
205 PRK09593 arb 6-phospho-beta-gl 58.0 12 0.00026 36.8 3.9 57 270-327 363-431 (478)
206 PRK12858 tagatose 1,6-diphosph 57.9 21 0.00046 33.4 5.3 59 66-128 110-168 (340)
207 PRK07535 methyltetrahydrofolat 57.6 1.4E+02 0.003 26.8 10.4 94 65-181 106-202 (261)
208 cd07940 DRE_TIM_IPMS 2-isoprop 57.6 26 0.00056 31.5 5.7 60 64-123 71-134 (268)
209 PRK14567 triosephosphate isome 57.5 1.4E+02 0.0031 26.7 11.7 54 64-125 74-127 (253)
210 cd06591 GH31_xylosidase_XylS X 57.2 1.3E+02 0.0029 27.7 10.5 58 66-126 28-89 (319)
211 PLN02429 triosephosphate isome 56.8 1.7E+02 0.0036 27.2 11.8 53 65-125 137-189 (315)
212 TIGR02026 BchE magnesium-proto 56.4 41 0.00088 33.3 7.3 57 64-123 286-343 (497)
213 TIGR02631 xylA_Arthro xylose i 56.1 93 0.002 29.7 9.4 100 99-212 111-215 (382)
214 COG1441 MenC O-succinylbenzoat 55.6 11 0.00024 32.9 2.8 51 59-122 213-263 (321)
215 COG3661 AguA Alpha-glucuronida 55.4 2.1E+02 0.0044 27.9 11.1 98 65-177 186-287 (684)
216 PRK00979 tetrahydromethanopter 55.2 1.2E+02 0.0025 28.1 9.4 86 65-180 136-231 (308)
217 COG3684 LacD Tagatose-1,6-bisp 54.8 16 0.00034 32.7 3.5 58 65-127 114-171 (306)
218 COG0469 PykF Pyruvate kinase [ 54.7 30 0.00066 33.9 5.9 53 64-126 19-73 (477)
219 PRK13397 3-deoxy-7-phosphohept 54.7 56 0.0012 29.2 7.1 55 68-126 35-89 (250)
220 TIGR01305 GMP_reduct_1 guanosi 54.3 43 0.00093 31.3 6.5 71 51-122 140-218 (343)
221 TIGR02109 PQQ_syn_pqqE coenzym 54.2 35 0.00076 32.0 6.3 59 62-123 92-152 (358)
222 COG0641 AslB Arylsulfatase reg 54.0 2E+02 0.0044 27.4 13.1 119 63-204 102-227 (378)
223 cd06602 GH31_MGAM_SI_GAA This 53.8 1.9E+02 0.0042 27.0 12.9 59 65-126 27-89 (339)
224 KOG1066 Glucosidase II catalyt 53.7 43 0.00094 34.3 6.8 120 61-181 367-513 (915)
225 COG1082 IolE Sugar phosphate i 53.5 1.5E+02 0.0032 26.2 10.0 131 65-214 48-179 (274)
226 PRK05301 pyrroloquinoline quin 53.4 32 0.00069 32.6 5.9 58 63-123 102-161 (378)
227 KOG3770 Acid sphingomyelinase 52.9 1.6E+02 0.0034 29.7 10.4 107 53-172 284-405 (577)
228 TIGR03234 OH-pyruv-isom hydrox 52.9 1.6E+02 0.0035 25.8 13.1 96 101-213 82-178 (254)
229 PLN02623 pyruvate kinase 52.6 17 0.00036 36.6 3.9 56 64-126 124-179 (581)
230 PRK09389 (R)-citramalate synth 52.5 17 0.00036 36.0 3.9 61 64-124 75-135 (488)
231 TIGR02171 Fb_sc_TIGR02171 Fibr 52.1 53 0.0012 34.7 7.4 70 99-181 804-876 (912)
232 PF04273 DUF442: Putative phos 51.9 12 0.00026 28.8 2.2 45 63-118 15-59 (110)
233 PF07364 DUF1485: Protein of u 50.8 18 0.00039 33.2 3.5 116 104-242 46-163 (292)
234 PF02065 Melibiase: Melibiase; 50.4 2.3E+02 0.0049 27.3 11.0 144 66-212 62-233 (394)
235 PRK08195 4-hyroxy-2-oxovalerat 50.2 43 0.00093 31.4 6.0 49 64-126 90-138 (337)
236 TIGR03217 4OH_2_O_val_ald 4-hy 49.9 46 0.00099 31.1 6.2 48 64-125 89-136 (333)
237 cd00927 Cyt_c_Oxidase_VIc Cyto 49.6 23 0.0005 24.8 3.1 24 53-76 43-66 (70)
238 COG2108 Uncharacterized conser 49.3 56 0.0012 30.3 6.3 101 62-202 121-221 (353)
239 TIGR02666 moaA molybdenum cofa 48.3 62 0.0013 30.0 6.9 60 65-127 102-164 (334)
240 smart00518 AP2Ec AP endonuclea 48.2 2E+02 0.0043 25.5 10.6 114 65-196 48-162 (273)
241 PRK09997 hydroxypyruvate isome 47.5 2E+02 0.0043 25.4 12.8 95 101-213 83-179 (258)
242 COG2876 AroA 3-deoxy-D-arabino 46.8 2E+02 0.0043 26.0 9.1 57 65-125 62-118 (286)
243 PF00224 PK: Pyruvate kinase, 46.7 12 0.00026 35.2 1.8 53 64-126 16-70 (348)
244 cd06543 GH18_PF-ChiA-like PF-C 46.5 2.3E+02 0.0051 25.9 13.9 126 69-212 19-145 (294)
245 cd07943 DRE_TIM_HOA 4-hydroxy- 46.3 58 0.0013 29.2 6.1 47 64-124 87-133 (263)
246 cd02872 GH18_chitolectin_chito 46.1 2.5E+02 0.0055 26.2 11.6 98 102-212 55-159 (362)
247 PRK13398 3-deoxy-7-phosphohept 45.6 81 0.0018 28.4 6.9 58 65-126 44-101 (266)
248 smart00729 Elp3 Elongator prot 45.5 33 0.00071 28.7 4.2 59 62-123 97-157 (216)
249 TIGR02867 spore_II_P stage II 45.3 60 0.0013 27.9 5.7 55 65-127 37-93 (196)
250 PF06415 iPGM_N: BPG-independe 45.2 74 0.0016 27.9 6.3 54 65-124 49-102 (223)
251 cd04502 SGNH_hydrolase_like_7 44.8 1.3E+02 0.0028 24.4 7.7 45 167-212 50-95 (171)
252 KOG2875 8-oxoguanine DNA glyco 44.5 32 0.0007 31.0 4.0 86 38-129 73-164 (323)
253 cd06603 GH31_GANC_GANAB_alpha 43.8 2.7E+02 0.0059 25.9 12.5 59 65-126 27-87 (339)
254 PF04343 DUF488: Protein of un 43.4 35 0.00075 26.6 3.7 26 105-130 2-27 (122)
255 COG1099 Predicted metal-depend 43.2 1.3E+02 0.0028 26.5 7.2 119 64-214 13-135 (254)
256 TIGR03849 arch_ComA phosphosul 43.0 1E+02 0.0022 27.3 6.8 49 65-125 74-122 (237)
257 PRK05826 pyruvate kinase; Prov 42.9 60 0.0013 31.9 5.9 53 64-126 18-72 (465)
258 PRK12331 oxaloacetate decarbox 42.5 47 0.001 32.5 5.1 48 63-124 97-144 (448)
259 PRK09240 thiH thiamine biosynt 42.3 3E+02 0.0065 26.1 10.5 125 63-214 161-299 (371)
260 KOG0564 5,10-methylenetetrahyd 42.2 40 0.00087 32.9 4.5 57 101-168 90-148 (590)
261 PF07071 DUF1341: Protein of u 41.1 86 0.0019 27.0 5.8 44 64-119 137-180 (218)
262 PF00121 TIM: Triosephosphate 41.1 97 0.0021 27.6 6.6 55 63-125 72-126 (244)
263 PRK10673 acyl-CoA esterase; Pr 40.9 82 0.0018 27.2 6.2 60 158-217 33-92 (255)
264 PRK00278 trpC indole-3-glycero 40.7 96 0.0021 27.8 6.6 24 103-126 147-170 (260)
265 COG1306 Uncharacterized conser 40.7 46 0.00099 30.5 4.3 58 65-123 80-144 (400)
266 PTZ00066 pyruvate kinase; Prov 40.4 33 0.00073 34.0 3.8 53 64-126 52-107 (513)
267 cd01299 Met_dep_hydrolase_A Me 40.4 1.1E+02 0.0023 28.3 7.1 57 65-122 123-179 (342)
268 PLN02461 Probable pyruvate kin 40.4 69 0.0015 31.8 5.9 53 64-126 35-89 (511)
269 cd06413 GH25_muramidase_1 Unch 40.3 2.2E+02 0.0049 23.9 11.7 118 65-212 14-131 (191)
270 cd02877 GH18_hevamine_XipI_cla 40.1 2.9E+02 0.0063 25.1 10.6 26 102-127 58-83 (280)
271 PRK09282 pyruvate carboxylase 40.0 1.2E+02 0.0026 30.8 7.8 53 58-124 92-144 (592)
272 COG1501 Alpha-glucosidases, fa 39.9 3.5E+02 0.0076 28.6 11.3 149 62-212 276-462 (772)
273 cd06601 GH31_lyase_GLase GLase 39.3 1.1E+02 0.0024 28.6 7.0 100 69-180 31-135 (332)
274 cd01335 Radical_SAM Radical SA 39.2 41 0.00089 27.6 3.9 60 64-126 87-148 (204)
275 cd06522 GH25_AtlA-like AtlA is 39.2 2.4E+02 0.0051 23.8 12.9 121 59-212 9-130 (192)
276 PF02208 Sorb: Sorbin homologo 39.0 32 0.0007 21.8 2.2 37 168-204 4-40 (47)
277 PRK06739 pyruvate kinase; Vali 39.0 68 0.0015 30.2 5.5 51 64-126 15-65 (352)
278 cd00288 Pyruvate_Kinase Pyruva 39.0 76 0.0016 31.3 6.0 53 64-126 16-70 (480)
279 PF13378 MR_MLE_C: Enolase C-t 38.9 97 0.0021 23.3 5.6 46 63-121 5-51 (111)
280 PRK06247 pyruvate kinase; Prov 38.8 78 0.0017 31.2 6.0 53 64-126 19-73 (476)
281 PLN02762 pyruvate kinase compl 38.7 41 0.00089 33.4 4.1 53 64-126 39-93 (509)
282 PRK10425 DNase TatD; Provision 38.4 1.9E+02 0.0041 25.8 8.2 43 277-319 86-128 (258)
283 TIGR00419 tim triosephosphate 38.2 2.6E+02 0.0057 24.1 12.1 49 63-123 69-117 (205)
284 PF10035 DUF2179: Uncharacteri 37.4 38 0.00083 22.2 2.6 21 193-213 29-49 (55)
285 KOG0626 Beta-glucosidase, lact 37.0 45 0.00096 33.0 4.0 63 273-336 405-481 (524)
286 KOG4701 Chitinase [Cell wall/m 36.9 3.8E+02 0.0083 25.6 10.7 122 103-241 90-217 (568)
287 PLN02765 pyruvate kinase 36.7 88 0.0019 31.2 6.0 53 64-126 42-96 (526)
288 COG3280 TreY Maltooligosyl tre 36.4 78 0.0017 32.8 5.6 56 65-123 22-88 (889)
289 COG0134 TrpC Indole-3-glycerol 36.3 38 0.00083 30.3 3.2 49 64-126 118-166 (254)
290 TIGR03128 RuMP_HxlA 3-hexulose 36.2 1.1E+02 0.0024 26.0 6.1 45 67-126 68-112 (206)
291 COG2100 Predicted Fe-S oxidore 36.2 1.2E+02 0.0026 28.3 6.3 62 62-129 201-268 (414)
292 PF02679 ComA: (2R)-phospho-3- 36.1 84 0.0018 28.0 5.3 58 55-124 77-134 (244)
293 PRK15452 putative protease; Pr 35.9 3.2E+02 0.007 26.7 9.7 58 65-127 13-70 (443)
294 PRK00865 glutamate racemase; P 35.9 1.7E+02 0.0036 26.2 7.4 58 154-212 18-75 (261)
295 cd00842 MPP_ASMase acid sphing 35.8 3.3E+02 0.0071 24.5 9.9 78 52-129 137-226 (296)
296 TIGR00109 hemH ferrochelatase. 35.7 3.6E+02 0.0079 25.0 10.7 145 58-221 101-276 (322)
297 PF02007 MtrH: Tetrahydrometha 35.5 1.5E+02 0.0033 27.1 6.8 70 53-129 119-197 (296)
298 PLN02681 proline dehydrogenase 35.4 1.2E+02 0.0027 29.7 6.8 26 100-125 217-242 (455)
299 COG2342 Predicted extracellula 35.4 3.5E+02 0.0076 24.7 15.7 66 144-212 119-192 (300)
300 PF14883 GHL13: Hypothetical g 35.4 3.5E+02 0.0077 24.7 11.2 136 65-206 20-186 (294)
301 cd06600 GH31_MGAM-like This fa 35.3 3.6E+02 0.0078 24.8 11.0 59 65-126 27-87 (317)
302 PLN02808 alpha-galactosidase 35.2 4.1E+02 0.0089 25.5 12.6 123 71-216 63-188 (386)
303 PF02937 COX6C: Cytochrome c o 35.2 41 0.00088 23.9 2.6 24 53-76 45-68 (73)
304 PRK08187 pyruvate kinase; Vali 34.9 93 0.002 30.8 5.9 52 64-126 148-202 (493)
305 cd03751 proteasome_alpha_type_ 34.9 23 0.00049 30.7 1.6 53 18-70 135-187 (212)
306 PRK12595 bifunctional 3-deoxy- 34.5 1.5E+02 0.0033 28.1 7.1 58 65-126 135-192 (360)
307 PF00218 IGPS: Indole-3-glycer 34.5 1.1E+02 0.0023 27.5 5.7 49 64-126 120-168 (254)
308 smart00636 Glyco_18 Glycosyl h 34.4 3.7E+02 0.008 24.7 11.2 96 104-212 53-154 (334)
309 PF02677 DUF208: Uncharacteriz 34.2 1E+02 0.0022 25.9 5.2 49 67-123 14-62 (176)
310 COG3623 SgaU Putative L-xylulo 34.1 3.4E+02 0.0073 24.2 8.8 62 64-127 98-159 (287)
311 TIGR01114 mtrH N5-methyltetrah 33.9 1.9E+02 0.0041 26.6 7.2 69 53-128 124-201 (314)
312 PRK13361 molybdenum cofactor b 33.8 1.4E+02 0.0031 27.6 6.8 56 65-123 104-161 (329)
313 PLN02449 ferrochelatase 33.8 3.3E+02 0.0072 27.0 9.4 148 58-223 188-370 (485)
314 TIGR03551 F420_cofH 7,8-dideme 33.7 2.9E+02 0.0063 25.8 8.9 131 63-215 139-279 (343)
315 PRK09206 pyruvate kinase; Prov 33.6 60 0.0013 31.9 4.4 53 64-126 16-70 (470)
316 PRK13125 trpA tryptophan synth 33.3 3.4E+02 0.0073 23.9 11.9 127 65-240 91-218 (244)
317 TIGR00977 LeuA_rel 2-isopropyl 33.2 2.2E+02 0.0048 28.5 8.4 60 65-124 84-143 (526)
318 PF01791 DeoC: DeoC/LacD famil 33.1 30 0.00065 30.4 2.1 53 65-122 79-131 (236)
319 PRK13957 indole-3-glycerol-pho 33.1 1.1E+02 0.0025 27.2 5.7 24 103-126 138-161 (247)
320 TIGR02351 thiH thiazole biosyn 32.8 4.3E+02 0.0093 24.9 10.6 130 63-214 160-298 (366)
321 PF04898 Glu_syn_central: Glut 32.7 1.2E+02 0.0025 27.8 5.7 57 61-121 101-160 (287)
322 PLN02389 biotin synthase 32.5 4.5E+02 0.0097 25.1 11.5 129 62-215 175-307 (379)
323 COG2945 Predicted hydrolase of 32.3 71 0.0015 27.4 4.0 57 56-116 41-99 (210)
324 TIGR01302 IMP_dehydrog inosine 32.2 1.6E+02 0.0036 28.7 7.2 60 62-122 273-333 (450)
325 COG0293 FtsJ 23S rRNA methylas 32.0 1.3E+02 0.0027 26.1 5.6 44 107-176 32-79 (205)
326 COG0535 Predicted Fe-S oxidore 31.6 1.3E+02 0.0028 27.6 6.2 59 63-124 106-166 (347)
327 cd00958 DhnA Class I fructose- 31.6 80 0.0017 27.6 4.6 54 65-126 79-132 (235)
328 PRK14041 oxaloacetate decarbox 31.5 2E+02 0.0043 28.4 7.5 48 64-125 97-144 (467)
329 PF00563 EAL: EAL domain; Int 31.2 77 0.0017 27.1 4.4 51 65-122 159-209 (236)
330 KOG2530 Members of tubulin/Fts 31.0 2E+02 0.0044 27.9 7.1 50 97-168 186-236 (483)
331 TIGR03699 mena_SCO4550 menaqui 30.7 2.6E+02 0.0057 25.9 8.1 56 65-122 143-200 (340)
332 PRK06354 pyruvate kinase; Prov 30.6 70 0.0015 32.5 4.4 53 64-126 22-76 (590)
333 PF01341 Glyco_hydro_6: Glycos 30.5 3.1E+02 0.0068 25.2 8.2 103 101-214 45-164 (298)
334 TIGR00628 ung uracil-DNA glyco 30.4 3.7E+02 0.0079 23.4 8.9 124 105-240 41-186 (212)
335 TIGR01108 oadA oxaloacetate de 30.3 89 0.0019 31.7 5.1 52 59-124 88-139 (582)
336 PRK00164 moaA molybdenum cofac 30.2 1.8E+02 0.0038 26.9 6.9 60 65-127 108-169 (331)
337 COG3453 Uncharacterized protei 30.2 41 0.00089 26.4 2.1 50 63-127 16-65 (130)
338 TIGR01064 pyruv_kin pyruvate k 30.2 1.4E+02 0.0029 29.5 6.2 53 64-126 15-69 (473)
339 PRK14334 (dimethylallyl)adenos 29.9 5.2E+02 0.011 25.0 12.7 55 61-121 230-290 (440)
340 PRK14047 putative methyltransf 29.8 2.4E+02 0.0052 25.9 7.1 68 54-128 125-201 (310)
341 cd06234 M14_Nna1_like_1 A bact 29.8 2.4E+02 0.0052 25.4 7.3 24 104-127 138-161 (263)
342 cd01311 PDC_hydrolase 2-pyrone 29.7 1.7E+02 0.0036 26.1 6.4 48 64-122 82-129 (263)
343 PRK14725 pyruvate kinase; Prov 29.7 1.2E+02 0.0027 30.7 5.8 52 64-126 154-208 (608)
344 TIGR01303 IMP_DH_rel_1 IMP deh 29.5 2E+02 0.0044 28.3 7.3 60 63-122 275-334 (475)
345 PRK13745 anaerobic sulfatase-m 29.5 5.1E+02 0.011 24.8 12.7 59 62-121 112-171 (412)
346 cd00019 AP2Ec AP endonuclease 29.4 4.1E+02 0.0088 23.6 9.3 94 99-212 81-176 (279)
347 TIGR01244 conserved hypothetic 29.3 50 0.0011 26.3 2.6 17 63-79 15-31 (135)
348 PF03992 ABM: Antibiotic biosy 29.2 1.8E+02 0.0039 19.6 5.3 34 148-181 13-47 (78)
349 TIGR03581 EF_0839 conserved hy 29.2 1.3E+02 0.0029 26.2 5.1 42 65-118 138-179 (236)
350 TIGR03235 DNA_S_dndA cysteine 29.0 73 0.0016 29.6 4.0 59 68-126 105-178 (353)
351 cd06549 GH18_trifunctional GH1 29.0 4.1E+02 0.0088 24.2 8.9 86 108-205 52-139 (298)
352 cd06419 GH25_muramidase_2 Unch 28.9 3.6E+02 0.0078 22.8 11.2 116 65-212 19-134 (190)
353 PF01619 Pro_dh: Proline dehyd 28.9 1.1E+02 0.0023 28.3 5.1 27 100-126 89-115 (313)
354 cd06604 GH31_glucosidase_II_Ma 28.9 4.8E+02 0.01 24.2 10.3 57 65-124 27-85 (339)
355 PRK15108 biotin synthase; Prov 28.7 4.9E+02 0.011 24.3 12.3 130 62-216 133-266 (345)
356 PF01212 Beta_elim_lyase: Beta 28.5 61 0.0013 29.6 3.3 22 101-122 143-164 (290)
357 PRK12677 xylose isomerase; Pro 28.5 3.2E+02 0.007 26.1 8.3 91 100-204 111-204 (384)
358 cd06592 GH31_glucosidase_KIAA1 28.5 1.2E+02 0.0026 27.8 5.3 57 66-125 34-92 (303)
359 cd01828 sialate_O-acetylestera 28.2 3.1E+02 0.0068 22.0 8.1 47 165-212 46-93 (169)
360 PF07454 SpoIIP: Stage II spor 28.1 1.8E+02 0.0039 26.3 6.1 56 65-127 114-170 (268)
361 KOG4518 Hydroxypyruvate isomer 27.9 4E+02 0.0087 23.0 10.8 129 66-211 20-177 (264)
362 COG2723 BglB Beta-glucosidase/ 27.8 92 0.002 30.4 4.5 70 7-81 19-119 (460)
363 PF14881 Tubulin_3: Tubulin do 27.7 3.7E+02 0.008 22.6 8.0 53 101-175 59-113 (180)
364 PRK09989 hypothetical protein; 27.7 1.1E+02 0.0023 27.2 4.7 57 65-123 88-144 (258)
365 PRK15492 triosephosphate isome 27.6 4.5E+02 0.0099 23.6 11.3 54 64-125 83-136 (260)
366 PF00762 Ferrochelatase: Ferro 27.2 1.8E+02 0.0039 26.9 6.2 148 58-223 97-273 (316)
367 TIGR00629 uvde UV damage endon 27.2 5.1E+02 0.011 24.0 14.5 159 65-242 55-224 (312)
368 PRK08508 biotin synthase; Prov 27.2 4.7E+02 0.01 23.6 11.0 127 62-214 99-227 (279)
369 cd04726 KGPDC_HPS 3-Keto-L-gul 27.1 2E+02 0.0043 24.2 6.1 45 67-126 69-113 (202)
370 PRK14566 triosephosphate isome 27.1 4.7E+02 0.01 23.6 11.6 54 64-125 84-137 (260)
371 PRK07709 fructose-bisphosphate 26.7 1.3E+02 0.0028 27.5 5.0 62 58-129 83-144 (285)
372 cd03753 proteasome_alpha_type_ 26.7 44 0.00096 28.8 2.0 56 18-73 137-192 (213)
373 COG5483 Uncharacterized conser 26.6 1E+02 0.0022 27.1 4.0 26 105-130 13-38 (289)
374 PLN02692 alpha-galactosidase 26.6 6E+02 0.013 24.6 12.2 131 63-216 70-212 (412)
375 PF12697 Abhydrolase_6: Alpha/ 26.5 2.4E+02 0.0052 23.0 6.6 49 168-216 25-76 (228)
376 PRK07807 inosine 5-monophospha 26.5 2.1E+02 0.0045 28.3 6.7 59 63-122 277-336 (479)
377 PF05013 FGase: N-formylglutam 26.4 1.3E+02 0.0029 26.0 5.0 28 102-129 116-144 (222)
378 PLN02763 hydrolase, hydrolyzin 26.4 8.8E+02 0.019 26.5 13.0 59 63-124 198-262 (978)
379 TIGR00629 uvde UV damage endon 26.3 48 0.001 30.6 2.2 23 105-127 201-223 (312)
380 TIGR03279 cyano_FeS_chp putati 26.2 2.2E+02 0.0048 27.6 6.7 64 62-128 125-189 (433)
381 PF03851 UvdE: UV-endonuclease 26.2 40 0.00086 30.6 1.6 22 105-126 192-213 (275)
382 COG4100 Cystathionine beta-lya 26.1 2.2E+02 0.0048 26.4 6.2 57 157-216 155-211 (416)
383 TIGR02536 eut_hyp ethanolamine 26.0 1.5E+02 0.0033 25.7 5.1 47 58-121 160-206 (207)
384 PF01359 Transposase_1: Transp 26.0 1.8E+02 0.0038 21.0 4.7 38 167-206 39-76 (81)
385 PF08915 tRNA-Thr_ED: Archaea- 25.8 73 0.0016 25.6 2.8 19 69-87 102-120 (138)
386 TIGR01125 MiaB-like tRNA modif 25.7 6.1E+02 0.013 24.4 10.2 58 63-123 230-292 (430)
387 TIGR01858 tag_bisphos_ald clas 25.6 1.4E+02 0.0031 27.1 5.1 63 58-130 78-140 (282)
388 cd03750 proteasome_alpha_type_ 25.6 42 0.00091 29.3 1.7 54 18-71 132-185 (227)
389 COG1830 FbaB DhnA-type fructos 25.5 1.2E+02 0.0026 27.3 4.5 48 66-121 101-148 (265)
390 PRK10812 putative DNAse; Provi 25.4 4.9E+02 0.011 23.3 9.5 44 277-320 89-132 (265)
391 smart00052 EAL Putative diguan 25.3 1.6E+02 0.0034 25.2 5.3 22 101-122 188-209 (241)
392 PRK12344 putative alpha-isopro 25.3 83 0.0018 31.4 3.8 60 64-124 87-147 (524)
393 KOG0259 Tyrosine aminotransfer 25.3 1E+02 0.0022 29.3 4.1 51 65-123 186-239 (447)
394 COG2870 RfaE ADP-heptose synth 25.0 1.1E+02 0.0024 29.4 4.3 30 97-126 152-181 (467)
395 PTZ00314 inosine-5'-monophosph 24.7 2.6E+02 0.0056 27.8 7.1 70 52-122 273-350 (495)
396 cd06598 GH31_transferase_CtsZ 24.6 5.5E+02 0.012 23.6 12.0 62 65-126 27-93 (317)
397 CHL00200 trpA tryptophan synth 24.6 2.3E+02 0.005 25.5 6.2 126 65-240 109-235 (263)
398 PF09370 TIM-br_sig_trns: TIM- 24.5 1.1E+02 0.0024 27.5 4.1 65 63-127 158-223 (268)
399 COG1116 TauB ABC-type nitrate/ 24.4 2.2E+02 0.0047 25.5 5.8 48 160-212 141-188 (248)
400 PRK00125 pyrF orotidine 5'-pho 24.4 80 0.0017 28.7 3.2 27 99-125 69-95 (278)
401 COG1121 ZnuC ABC-type Mn/Zn tr 24.2 2.5E+02 0.0054 25.2 6.2 47 160-212 150-196 (254)
402 PF13199 Glyco_hydro_66: Glyco 24.2 2.4E+02 0.0052 28.5 6.8 145 65-212 121-307 (559)
403 COG0084 TatD Mg-dependent DNas 24.1 5.2E+02 0.011 23.1 10.1 99 195-309 21-122 (256)
404 cd02068 radical_SAM_B12_BD B12 24.1 1.4E+02 0.003 23.1 4.3 47 166-222 38-84 (127)
405 PRK05096 guanosine 5'-monophos 24.1 2.9E+02 0.0062 26.0 6.7 59 63-122 160-219 (346)
406 TIGR00423 radical SAM domain p 24.0 2.4E+02 0.0052 25.8 6.5 58 64-123 106-165 (309)
407 PRK12435 ferrochelatase; Provi 23.9 5.2E+02 0.011 23.8 8.6 145 58-221 87-263 (311)
408 cd05799 PGM2 This CD includes 23.9 3E+02 0.0065 27.0 7.5 81 100-206 167-254 (487)
409 PRK05835 fructose-bisphosphate 23.9 5.4E+02 0.012 23.8 8.5 59 61-129 83-141 (307)
410 PF07287 DUF1446: Protein of u 23.6 3.3E+02 0.0071 25.9 7.2 27 96-122 51-77 (362)
411 COG0826 Collagenase and relate 23.6 6.2E+02 0.013 23.8 12.7 57 65-126 16-72 (347)
412 PRK09195 gatY tagatose-bisphos 23.5 5.7E+02 0.012 23.3 8.6 63 58-130 80-142 (284)
413 PRK00042 tpiA triosephosphate 23.4 5.3E+02 0.012 23.0 12.9 56 62-125 73-128 (250)
414 PRK14340 (dimethylallyl)adenos 23.3 2.9E+02 0.0062 27.0 7.1 62 63-128 243-311 (445)
415 PRK12737 gatY tagatose-bisphos 23.2 5.8E+02 0.012 23.3 8.5 62 58-129 80-141 (284)
416 PF00975 Thioesterase: Thioest 23.1 1.9E+02 0.0042 24.5 5.4 55 157-212 16-72 (229)
417 PRK05567 inosine 5'-monophosph 23.1 2.5E+02 0.0053 27.8 6.7 59 63-122 278-337 (486)
418 KOG4589 Cell division protein 22.9 2.2E+02 0.0047 24.5 5.2 52 157-209 83-137 (232)
419 KOG1065 Maltase glucoamylase a 22.9 4.2E+02 0.009 28.0 8.2 57 65-124 314-372 (805)
420 COG1453 Predicted oxidoreducta 22.9 4.2E+02 0.0091 25.2 7.6 153 70-242 12-178 (391)
421 PF04028 DUF374: Domain of unk 22.8 2.8E+02 0.0062 19.6 6.2 45 69-128 27-71 (74)
422 PRK08227 autoinducer 2 aldolas 22.8 1.3E+02 0.0028 27.2 4.2 46 68-121 100-145 (264)
423 cd01948 EAL EAL domain. This d 22.5 1.8E+02 0.0038 24.9 5.1 52 65-122 157-208 (240)
424 PRK13307 bifunctional formalde 22.5 2.3E+02 0.0051 27.1 6.1 44 68-126 243-286 (391)
425 PF08373 RAP: RAP domain; Int 22.4 48 0.001 21.8 1.1 20 68-87 24-43 (58)
426 TIGR02883 spore_cwlD N-acetylm 22.4 4.7E+02 0.01 21.9 12.1 70 57-127 25-94 (189)
427 PRK14327 (dimethylallyl)adenos 22.2 7.9E+02 0.017 24.5 10.7 61 63-127 307-374 (509)
428 COG0821 gcpE 1-hydroxy-2-methy 22.2 2.1E+02 0.0045 26.8 5.4 47 65-127 39-85 (361)
429 cd03749 proteasome_alpha_type_ 22.1 58 0.0013 28.1 1.9 54 18-71 130-185 (211)
430 COG1692 Calcineurin-like phosp 21.8 2.8E+02 0.0061 24.8 5.9 28 100-127 127-154 (266)
431 TIGR00268 conserved hypothetic 21.8 1.6E+02 0.0035 26.1 4.7 65 61-127 177-250 (252)
432 cd03761 proteasome_beta_type_5 21.8 45 0.00097 28.1 1.1 54 18-71 102-155 (188)
433 PRK08673 3-deoxy-7-phosphohept 21.8 2.1E+02 0.0046 26.8 5.6 58 65-126 110-167 (335)
434 PF02156 Glyco_hydro_26: Glyco 21.7 2.7E+02 0.006 25.7 6.3 57 102-170 136-196 (311)
435 PRK12738 kbaY tagatose-bisphos 21.7 1.9E+02 0.0041 26.4 5.1 62 58-129 80-141 (286)
436 COG0796 MurI Glutamate racemas 21.6 4.5E+02 0.0097 23.8 7.3 57 155-212 19-75 (269)
437 cd02932 OYE_YqiM_FMN Old yello 21.6 6.5E+02 0.014 23.3 13.0 31 96-126 70-100 (336)
438 PRK11449 putative deoxyribonuc 21.5 5.8E+02 0.013 22.7 9.7 33 277-309 92-124 (258)
439 TIGR02668 moaA_archaeal probab 21.3 3.3E+02 0.0072 24.6 6.8 55 65-122 98-154 (302)
440 PRK14042 pyruvate carboxylase 21.3 4.2E+02 0.0091 27.1 7.9 53 58-124 92-144 (596)
441 TIGR00067 glut_race glutamate 21.2 4.5E+02 0.0097 23.3 7.4 57 155-212 12-69 (251)
442 PF06838 Met_gamma_lyase: Meth 21.0 1E+02 0.0023 29.2 3.3 27 190-216 174-200 (403)
443 PF14606 Lipase_GDSL_3: GDSL-l 20.9 1.2E+02 0.0026 25.6 3.4 29 185-213 72-100 (178)
444 PRK05434 phosphoglyceromutase; 20.8 3.4E+02 0.0073 27.1 7.0 54 65-124 131-184 (507)
445 cd01827 sialate_O-acetylestera 20.6 4.6E+02 0.0099 21.4 7.1 46 167-212 67-114 (188)
446 cd03315 MLE_like Muconate lact 20.6 6E+02 0.013 22.5 8.8 98 66-214 91-188 (265)
447 cd05800 PGM_like2 This PGM-lik 20.6 6.5E+02 0.014 24.4 9.1 80 100-209 155-239 (461)
448 PRK15414 phosphomannomutase Cp 20.5 4.6E+02 0.01 25.6 7.9 29 99-127 153-181 (456)
449 PRK09989 hypothetical protein; 20.5 5.8E+02 0.013 22.3 13.2 95 101-213 83-179 (258)
450 COG1168 MalY Bifunctional PLP- 20.5 1E+02 0.0023 29.2 3.2 25 101-125 176-201 (388)
451 PRK06245 cofG FO synthase subu 20.5 6.8E+02 0.015 23.1 10.6 126 62-207 112-242 (336)
452 COG2896 MoaA Molybdenum cofact 20.4 1.1E+02 0.0025 28.4 3.4 62 64-128 100-163 (322)
453 PRK07998 gatY putative fructos 20.4 3.6E+02 0.0078 24.6 6.6 57 63-129 85-141 (283)
454 PRK14336 (dimethylallyl)adenos 20.3 7.8E+02 0.017 23.7 10.1 64 62-128 218-287 (418)
455 KOG2331 Predicted glycosylhydr 20.3 2.5E+02 0.0055 27.2 5.6 60 148-211 150-209 (526)
456 TIGR02326 transamin_PhnW 2-ami 20.2 1.3E+02 0.0027 28.1 3.8 26 101-126 144-169 (363)
457 KOG0053 Cystathionine beta-lya 20.2 1.2E+02 0.0027 29.1 3.6 57 62-126 146-202 (409)
458 PRK00915 2-isopropylmalate syn 20.1 1.2E+02 0.0027 30.1 3.9 61 64-124 77-141 (513)
459 cd00947 TBP_aldolase_IIB Tagat 20.0 2.1E+02 0.0046 26.0 5.0 58 63-130 80-137 (276)
No 1
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=100.00 E-value=1.2e-36 Score=277.12 Aligned_cols=248 Identities=29% Similarity=0.425 Sum_probs=176.8
Q ss_pred cCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCCc
Q 019395 63 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGF 142 (341)
Q Consensus 63 ~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~ 142 (341)
+++++|+.|+++|+|+|||||.|..+.++.++..+++..+++||++|++|.++||+||||+|..|+..+...
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~~~w~~~~~-------- 93 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNAPGWANGGD-------- 93 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEESTTCSSSTS--------
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccc--------
Confidence 779999999999999999999986666565555577889999999999999999999999999865422111
Q ss_pred cCCc-hhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCC-------hHHHHHHHHHHHHHHHhcCCCceEEEeCC
Q 019395 143 QEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVA-------LDTLKSYYKAGYDAVRKYTSTAYVIMSNR 214 (341)
Q Consensus 143 ~~w~-~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~-------~~~~~~~~~~~~~aIR~~~p~~~v~~~~~ 214 (341)
.... ....+.+.++|+.|++||++++.+++|||+|||...... ...+.+++++++++||+++|+++|++++.
T Consensus 94 ~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~~~ 173 (281)
T PF00150_consen 94 GYGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNHLIIVGGG 173 (281)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSSEEEEEEH
T ss_pred ccccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcceeecCCC
Confidence 1111 356677888999999999999999999999999974322 26789999999999999999999999853
Q ss_pred -CCCCChhh-hhhccC-CCCcEEEEeeecCCCCccccCc-cchhhhHHHHhhhhhhhhhhhccCCCceEEEeecCCCCCC
Q 019395 215 -LGPADHKE-LLSFAS-GLSRVVIDVHYYNLFSNNFNGL-NVQQNIDYVNNQRASDLGAVTTSNGPLTFVGEWTCEWNVK 290 (341)
Q Consensus 215 -~~~~~~~~-~~~~~~-~~~~~v~~~H~Y~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~pv~vGE~g~~~~~~ 290 (341)
|+ ..... ....+. ...++++++|.|.++....... ........+......... ..+..+.||+|||||.....
T Consensus 174 ~~~-~~~~~~~~~~P~~~~~~~~~~~H~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~pv~~gE~G~~~~~- 250 (281)
T PF00150_consen 174 GWG-ADPDGAAADNPNDADNNDVYSFHFYDPYDFSDQWNPGNWGDASALESSFRAALN-WAKKNGKPVVVGEFGWSNND- 250 (281)
T ss_dssp HHH-TBHHHHHHHSTTTTTTSEEEEEEEETTTCHHTTTSTCSHHHHHHHHHHHHHHHH-HHHHTTSEEEEEEEESSTTT-
T ss_pred ccc-cccchhhhcCcccccCceeEEeeEeCCCCcCCccccccchhhhHHHHHHHHHHH-HHHHcCCeEEEeCcCCcCCC-
Confidence 33 23322 333332 4689999999999865321111 111111222222222222 33445778999999986421
Q ss_pred CCCHHHHHHHHHHHHHHHccCCCcEEEeccccCC
Q 019395 291 DASKQDYQRFANAQLDVYGRATFGWAYWAHKCEA 324 (341)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~Gw~~W~~k~~~ 324 (341)
.. ...++....++.+++.++||++|+||.++
T Consensus 251 -~~--~~~~~~~~~~~~~~~~~~g~~~W~~~~~~ 281 (281)
T PF00150_consen 251 -GN--GSTDYADAWLDYLEQNGIGWIYWSWKPNS 281 (281)
T ss_dssp -SC--HHHHHHHHHHHHHHHTTCEEEECEESSSS
T ss_pred -CC--cCHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 11 33344444577778889999999999764
No 2
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=99.96 E-value=1.1e-28 Score=235.22 Aligned_cols=301 Identities=29% Similarity=0.453 Sum_probs=202.0
Q ss_pred CcchhhhhhhhcCcchHHHHHHHHHhhccCHHHHHHHHHCCCCEEEcCcccccccCCCC-CCCcc--cchHHHHHHHHHH
Q 019395 35 TLRGEYQITNGFGPDKAPQVLQDHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTP-PKPFV--GGSSKVLDNAFDW 111 (341)
Q Consensus 35 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~-~~~~~--~~~l~~ld~~i~~ 111 (341)
....+...+..+|...+...++.||.++++++++..|+++|||+||||++||.+ .+.. ..|+. ...+.+|+++|++
T Consensus 46 ~~~~~~~~g~~lg~~~~~~~~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~-~~~~~~~p~~~~~~~~~~ld~~I~~ 124 (407)
T COG2730 46 QLVGVSWFGLNLGNHLAQGLLESHWGNFITEEDFDQIKSAGFNAVRIPIGYWAL-QATDGDNPYLIGLTQLKILDEAINW 124 (407)
T ss_pred eeecccccceecCchhhcccchhccchhhhhhHHHHHHHcCCcEEEcccchhhh-hccCCCCCCeecchHHHHHHHHHHH
Confidence 335566667777887888899999999999999999999999999999999876 3322 23333 3566799999999
Q ss_pred HHHcCCeEEEecCCCCCCCCCCCCCCCCCCccCCchhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCChHHHHH
Q 019395 112 AEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKS 191 (341)
Q Consensus 112 a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~~~~~ 191 (341)
|.++||+|+||+|++|+++++.++++....... ...+++++++.|++++.||++.+.|+++|++|||+. -...+.|..
T Consensus 125 a~~~gi~V~iD~H~~~~~~~~~~~s~~~~~~~~-~~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~-~~~~~~w~~ 202 (407)
T COG2730 125 AKKLGIYVLIDLHGYPGGNNGHEHSGYTSDYKE-ENENVEATIDIWKFIANRFKNYDTVIGFELINEPNG-IVTSETWNG 202 (407)
T ss_pred HHhcCeeEEEEecccCCCCCCcCcccccccccc-cchhHHHHHHHHHHHHHhccCCCceeeeeeecCCcc-cCCcccccc
Confidence 999999999999999999999988875433332 457889999999999999999999999999999995 122233333
Q ss_pred HHHHHHHHHH-hcCCCc---eEEEeCC-CCC------CChhh--------hhhcc--CC---CCcEEEEeeecCCCCcc-
Q 019395 192 YYKAGYDAVR-KYTSTA---YVIMSNR-LGP------ADHKE--------LLSFA--SG---LSRVVIDVHYYNLFSNN- 246 (341)
Q Consensus 192 ~~~~~~~aIR-~~~p~~---~v~~~~~-~~~------~~~~~--------~~~~~--~~---~~~~v~~~H~Y~~~~~~- 246 (341)
...++++.|| +....+ +|.++.. +.. ..+.. -...+ ++ ....+++.|.|.+....
T Consensus 203 ~~~~A~~~v~~~i~~~~~~~~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~ 282 (407)
T COG2730 203 GDDEAYDVVRNAILSNAPHWLIRVGGQGLNGWRVIMAHTYGSSDGGNDNGVYIVPVDDPGLTANKHLYAPHVYGDDVLNG 282 (407)
T ss_pred chHHHHHHHHhhhhhcCceEEEEECcccccCCeeeccCCCccccccccCCceeeeccchhhhccceeccceeecchhhcC
Confidence 3356666664 444443 4444421 111 00000 00011 12 23445555555331100
Q ss_pred --ccCccchhhhHHHHhhhhhhhhhhhccCCCceEEEeecCCCC-C----CCCCHHHHHHHHHHHHHHHccCCCcEEEec
Q 019395 247 --FNGLNVQQNIDYVNNQRASDLGAVTTSNGPLTFVGEWTCEWN-V----KDASKQDYQRFANAQLDVYGRATFGWAYWA 319 (341)
Q Consensus 247 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~vGE~g~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~Gw~~W~ 319 (341)
.............+......+....+..+.++++||||...+ . .....+..+.+.+.+.+.++. ..+|..|+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Ge~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~W~~~~ 361 (407)
T COG2730 283 GSWTVGGEFDLAETDCAIWLNYVGHGARKNGYPTVIGEFGGNYNANNPNPQDERKDNVKVYLENQLDVFDT-TTYWINNP 361 (407)
T ss_pred CCCCccCCcccccccceeeecceeecccccceeeeeccccCccccCCCCccchhhHHHHHHhhhhhhhccc-eeEEEeec
Confidence 000001111112222233344444556788899999998773 1 234567788999999999987 88999999
Q ss_pred cccC-CCCCChHHHHHCCCcc
Q 019395 320 HKCE-ANHWSLKWMIENGYIK 339 (341)
Q Consensus 320 ~k~~-~~~W~~~~~~~~g~~~ 339 (341)
++++ ...|+.+.....+..+
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~ 382 (407)
T COG2730 362 WSGGNDTGYDIEDDINLGLFP 382 (407)
T ss_pred ccCCCCCccchhhcchhhccc
Confidence 9987 4778777665554443
No 3
>TIGR03356 BGL beta-galactosidase.
Probab=99.85 E-value=5.2e-20 Score=176.35 Aligned_cols=183 Identities=21% Similarity=0.247 Sum_probs=132.0
Q ss_pred ceeeeccCC-CCccc--CCcccccccccCCcchhhhhhhhcCcchHHHHHHHHHhhccCHHHHHHHHHCCCCEEEcCccc
Q 019395 9 TRLTADYGS-SSWDD--SDPSVFKLNIVSTLRGEYQITNGFGPDKAPQVLQDHWDSYITDEDFKFLSSNGINAVRIPVGW 85 (341)
Q Consensus 9 ~~~~~~~~~-~~~~~--~~p~~f~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~e~d~~~i~~~G~N~VRlpi~~ 85 (341)
|..||+.|. |+|.+ ++||+++..... .. ........+.|. +||+.| ++|++.|+++|+|++|++|.|
T Consensus 8 G~atsa~Q~EG~~~~~gkg~s~wd~~~~~-~~---~~~~~~~~~~a~----d~y~~y--~eDi~l~~~~G~~~~R~si~W 77 (427)
T TIGR03356 8 GVATASYQIEGAVNEDGRGPSIWDTFSHT-PG---KVKDGDTGDVAC----DHYHRY--EEDVALMKELGVDAYRFSIAW 77 (427)
T ss_pred eeechHHhhCCCcCCCCCccchhheeccC-CC---cccCCCCCCccc----cHHHhH--HHHHHHHHHcCCCeEEcccch
Confidence 678999999 99855 789999874311 00 111111233444 788888 999999999999999999999
Q ss_pred ccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCCccCCc-hhHHHHHHHHHHHHHHHh
Q 019395 86 WIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWG-DSNVADTVAVIDFLAARY 164 (341)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~~w~-~~~~~~~~~~~~~la~~y 164 (341)
..++ |...+.++++++++++++|+.|.++||.+||||||+.-++.-.+. ..|. ++.++.|+++++.++++|
T Consensus 78 sri~-p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P~~l~~~-------gGw~~~~~~~~f~~ya~~~~~~~ 149 (427)
T TIGR03356 78 PRIF-PEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLPQALEDR-------GGWLNRDTAEWFAEYAAVVAERL 149 (427)
T ss_pred hhcc-cCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCccHHHHhc-------CCCCChHHHHHHHHHHHHHHHHh
Confidence 6554 442246788899999999999999999999999998544321111 2266 788999999999999999
Q ss_pred CCCCceeEEEeecCCCCC------------C-CCh-------HHHHHHHHHHHHHHHhcCCCceEEE
Q 019395 165 ANRPSLAAIELINEPLAP------------G-VAL-------DTLKSYYKAGYDAVRKYTSTAYVIM 211 (341)
Q Consensus 165 ~~~~~v~~~el~NEP~~~------------~-~~~-------~~~~~~~~~~~~aIR~~~p~~~v~~ 211 (341)
++.... |.++|||+.. . ... ..+.....++++++|+..|+..|.+
T Consensus 150 ~d~v~~--w~t~NEp~~~~~~~y~~G~~~P~~~~~~~~~~~~hnll~Aha~A~~~~~~~~~~~~IGi 214 (427)
T TIGR03356 150 GDRVKH--WITLNEPWCSAFLGYGLGVHAPGLRDLRAALQAAHHLLLAHGLAVQALRANGPGAQVGI 214 (427)
T ss_pred CCcCCE--EEEecCcceecccchhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence 996554 6799999841 0 110 1223344567788888888644444
No 4
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=99.78 E-value=2.1e-19 Score=174.12 Aligned_cols=183 Identities=20% Similarity=0.278 Sum_probs=126.4
Q ss_pred ceeeeccCC-CCccc--CCcccccccccCCcchhhhhhhhcCcchHHHHHHHHHhhccCHHHHHHHHHCCCCEEEcCccc
Q 019395 9 TRLTADYGS-SSWDD--SDPSVFKLNIVSTLRGEYQITNGFGPDKAPQVLQDHWDSYITDEDFKFLSSNGINAVRIPVGW 85 (341)
Q Consensus 9 ~~~~~~~~~-~~~~~--~~p~~f~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~e~d~~~i~~~G~N~VRlpi~~ 85 (341)
|..||++|. |+|.. +.||+++.+... .-........+.+. +||+.| ++|++.||++|+|+.|++|+|
T Consensus 12 G~atsa~Q~EG~~~~dGkg~s~wd~~~~~----~~~~~~~~~~~~a~----d~y~~y--~eDi~l~~~lg~~~yRfsi~W 81 (455)
T PF00232_consen 12 GVATSAYQIEGAWNEDGKGPSIWDTFCHE----PGKVEDGSTGDVAC----DHYHRY--KEDIALMKELGVNAYRFSISW 81 (455)
T ss_dssp EEE--HHHHSSSTTSTTSTTBHHHHHHHS----TTSSTTSSSSSSTT----GHHHHH--HHHHHHHHHHT-SEEEEE--H
T ss_pred EEeceeccccceecCCCCCcccccccccc----cceeeccccCcccc----cchhhh--hHHHHHHHhhccceeeeecch
Confidence 678999999 88844 788988854321 00111111233344 888888 999999999999999999999
Q ss_pred ccccCCCC-CCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCCccCCc-hhHHHHHHHHHHHHHHH
Q 019395 86 WIANDPTP-PKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWG-DSNVADTVAVIDFLAAR 163 (341)
Q Consensus 86 ~~~~~~~~-~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~~w~-~~~~~~~~~~~~~la~~ 163 (341)
..+ .|.+ .+..++++++.++++|+.++++||.+||+|||+.-++.-.+. ..|. ++.++.|+++.+.++++
T Consensus 82 ~Ri-~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~~-------ggw~~~~~~~~F~~Ya~~~~~~ 153 (455)
T PF00232_consen 82 SRI-FPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLEDY-------GGWLNRETVDWFARYAEFVFER 153 (455)
T ss_dssp HHH-STTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHHH-------TGGGSTHHHHHHHHHHHHHHHH
T ss_pred hhe-eecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceeec-------ccccCHHHHHHHHHHHHHHHHH
Confidence 654 4554 467889999999999999999999999999998544321111 2276 89999999999999999
Q ss_pred hCCCCceeEEEeecCCCC------------CC-CCh-------HHHHHHHHHHHHHHHhcCCCceEEE
Q 019395 164 YANRPSLAAIELINEPLA------------PG-VAL-------DTLKSYYKAGYDAVRKYTSTAYVIM 211 (341)
Q Consensus 164 y~~~~~v~~~el~NEP~~------------~~-~~~-------~~~~~~~~~~~~aIR~~~p~~~v~~ 211 (341)
|++.... |-++|||.. ++ .+. ..+.....++++++|+..|+..|-+
T Consensus 154 ~gd~V~~--w~T~NEp~~~~~~~y~~g~~~p~~~~~~~~~~~~h~~l~AHa~A~~~~~~~~~~~~IGi 219 (455)
T PF00232_consen 154 FGDRVKY--WITFNEPNVFALLGYLYGGFPPGRDSLKAFYQAAHNLLLAHAKAVKAIKEKYPDGKIGI 219 (455)
T ss_dssp HTTTBSE--EEEEETHHHHHHHHHTSSSSTTCSSTHHHHHHHHHHHHHHHHHHHHHHHHHTCTSEEEE
T ss_pred hCCCcce--EEeccccceeeccccccccccccccccchhhHHHhhHHHHHHHHHHHHhhcccceEEec
Confidence 9997666 559999985 11 111 1233445577888999888766644
No 5
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=99.77 E-value=4.7e-18 Score=159.61 Aligned_cols=157 Identities=18% Similarity=0.280 Sum_probs=126.2
Q ss_pred ceeeeccCC-CCccc--CCcccccccccCCcchhhhhhhhcCcchHHHHHHHHHhhccCHHHHHHHHHCCCCEEEcCccc
Q 019395 9 TRLTADYGS-SSWDD--SDPSVFKLNIVSTLRGEYQITNGFGPDKAPQVLQDHWDSYITDEDFKFLSSNGINAVRIPVGW 85 (341)
Q Consensus 9 ~~~~~~~~~-~~~~~--~~p~~f~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~e~d~~~i~~~G~N~VRlpi~~ 85 (341)
|.++|+.|. |+|.. +.||+++......+ .-.+..+.++++|. +||+.| ++|++.+|++|+|+.|++|.|
T Consensus 11 G~AtAa~Q~EGa~~~dGkg~s~wD~~~~~~~--~~~~~~~~~~~~a~----d~YhrY--keDi~L~~emG~~~~R~SI~W 82 (460)
T COG2723 11 GGATAAFQVEGAWNEDGKGPSDWDVWVHDEI--PGRLVSGDPPEEAS----DFYHRY--KEDIALAKEMGLNAFRTSIEW 82 (460)
T ss_pred ecccccccccCCcCCCCCCCeeeeeeecccc--CCcccCCCCCcccc----chhhhh--HHHHHHHHHcCCCEEEeeeeE
Confidence 567899999 99965 78999886553221 11233445677777 899999 999999999999999999999
Q ss_pred ccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCCccCCc-hhHHHHHHHHHHHHHHHh
Q 019395 86 WIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWG-DSNVADTVAVIDFLAARY 164 (341)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~~w~-~~~~~~~~~~~~~la~~y 164 (341)
.+.++...+.+.++++++.++++++.|.++||.++|+|||+..++...+..| .|. ++.++.|+++.+.+++||
T Consensus 83 sRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~Hfd~P~~L~~~yg------GW~nR~~i~~F~~ya~~vf~~f 156 (460)
T COG2723 83 SRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLYHFDLPLWLQKPYG------GWENRETVDAFARYAATVFERF 156 (460)
T ss_pred EEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecccCCcHHHhhccC------CccCHHHHHHHHHHHHHHHHHh
Confidence 7666533333678899999999999999999999999999987765544422 387 899999999999999999
Q ss_pred CCCCceeEEEeecCCCC
Q 019395 165 ANRPSLAAIELINEPLA 181 (341)
Q Consensus 165 ~~~~~v~~~el~NEP~~ 181 (341)
+|.... |-++|||+.
T Consensus 157 ~dkVk~--W~TFNE~n~ 171 (460)
T COG2723 157 GDKVKY--WFTFNEPNV 171 (460)
T ss_pred cCcceE--EEEecchhh
Confidence 997766 449999996
No 6
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.74 E-value=1.5e-16 Score=145.95 Aligned_cols=227 Identities=22% Similarity=0.313 Sum_probs=139.7
Q ss_pred CHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCC-----CCCCCCCCCCCC
Q 019395 64 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA-----PGSQNGNEHSAT 138 (341)
Q Consensus 64 ~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~-----~g~~~~~~~~g~ 138 (341)
.++-|+.||+.|+|+|||.+ +.+|..++- ..++...++.+.|++.||+|+||+|-. ||.|.
T Consensus 26 ~~d~~~ilk~~G~N~vRlRv----wv~P~~~g~---~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~------- 91 (332)
T PF07745_consen 26 EKDLFQILKDHGVNAVRLRV----WVNPYDGGY---NDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQN------- 91 (332)
T ss_dssp B--HHHHHHHTT--EEEEEE-----SS-TTTTT---TSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B-------
T ss_pred CCCHHHHHHhcCCCeEEEEe----ccCCccccc---CCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCC-------
Confidence 47889999999999999987 345544211 247888889999999999999999953 44443
Q ss_pred CCCccCCc----hhHHHHHHHHHHHHHHHhCCCC-ceeEEEeecCCCC-------CCCChHHHHHHHHHHHHHHHhcCCC
Q 019395 139 RDGFQEWG----DSNVADTVAVIDFLAARYANRP-SLAAIELINEPLA-------PGVALDTLKSYYKAGYDAVRKYTST 206 (341)
Q Consensus 139 ~~~~~~w~----~~~~~~~~~~~~~la~~y~~~~-~v~~~el~NEP~~-------~~~~~~~~~~~~~~~~~aIR~~~p~ 206 (341)
.+..|. ....+...++-+.+.+.+++.- .+-.+++-||-+. .....+.+.++..+.+++||+++|+
T Consensus 92 --~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p~ 169 (332)
T PF07745_consen 92 --KPAAWANLSFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDPN 169 (332)
T ss_dssp ----TTCTSSSHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSST
T ss_pred --CCccCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCCC
Confidence 234575 3344445566666666665532 2344789999553 3356678999999999999999999
Q ss_pred ceEEEeCCCCC-C-Chhhhhhcc--CCCCcEEEEeeecCCCCccccCccchhhhHHHHhhhhhhhhhhhccCCCceEEEe
Q 019395 207 AYVIMSNRLGP-A-DHKELLSFA--SGLSRVVIDVHYYNLFSNNFNGLNVQQNIDYVNNQRASDLGAVTTSNGPLTFVGE 282 (341)
Q Consensus 207 ~~v~~~~~~~~-~-~~~~~~~~~--~~~~~~v~~~H~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~vGE 282 (341)
..|+++-..+. . ....+.+.. .+.+..|+.+++|+.|.. .++.+.. .+..++++.++||+|.|
T Consensus 170 ~kV~lH~~~~~~~~~~~~~f~~l~~~g~d~DviGlSyYP~w~~---------~l~~l~~----~l~~l~~ry~K~V~V~E 236 (332)
T PF07745_consen 170 IKVMLHLANGGDNDLYRWFFDNLKAAGVDFDVIGLSYYPFWHG---------TLEDLKN----NLNDLASRYGKPVMVVE 236 (332)
T ss_dssp SEEEEEES-TTSHHHHHHHHHHHHHTTGG-SEEEEEE-STTST----------HHHHHH----HHHHHHHHHT-EEEEEE
T ss_pred CcEEEEECCCCchHHHHHHHHHHHhcCCCcceEEEecCCCCcc---------hHHHHHH----HHHHHHHHhCCeeEEEe
Confidence 99999932221 1 112233221 356778999999976542 2222222 23344455578899999
Q ss_pred ecCCCCC------------------CCCCHHHHHHHHHHHHHHHcc----CCCcEEEec
Q 019395 283 WTCEWNV------------------KDASKQDYQRFANAQLDVYGR----ATFGWAYWA 319 (341)
Q Consensus 283 ~g~~~~~------------------~~~~~~~~~~~~~~~~~~~~~----~~~Gw~~W~ 319 (341)
.|..+.. -..+.+..++|+++.+++..+ .++|.|||.
T Consensus 237 t~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~~p~~~g~GvfYWe 295 (332)
T PF07745_consen 237 TGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKNVPNGGGLGVFYWE 295 (332)
T ss_dssp E---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHTS--TTEEEEEEE-
T ss_pred ccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHHhccCCeEEEEeec
Confidence 9976540 113567788998888876554 789999993
No 7
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=99.71 E-value=1.6e-16 Score=154.03 Aligned_cols=148 Identities=21% Similarity=0.292 Sum_probs=117.8
Q ss_pred ceeeeccCC-CCccc--CCcccccccccCCcchhhhhhhhcCcchHHHHHHHHHhhccCHHHHHHHHHCCCCEEEcCccc
Q 019395 9 TRLTADYGS-SSWDD--SDPSVFKLNIVSTLRGEYQITNGFGPDKAPQVLQDHWDSYITDEDFKFLSSNGINAVRIPVGW 85 (341)
Q Consensus 9 ~~~~~~~~~-~~~~~--~~p~~f~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~e~d~~~i~~~G~N~VRlpi~~ 85 (341)
|..||+.|. |+|.+ ++||+++.+... .. ....+.|. +||+.| ++|++.||++|+|+.|++|+|
T Consensus 12 G~Atsa~QiEG~~~~~Gkg~siwD~~~~~-~~-------~~~~~~a~----d~Y~ry--~eDi~L~~~lG~~~yRfSIsW 77 (469)
T PRK13511 12 GGATAAYQAEGATKTDGKGPVAWDKYLEE-NY-------WFTPDPAS----DFYHRY--PEDLKLAEEFGVNGIRISIAW 77 (469)
T ss_pred EeechHhhhcCCcCCCCCccchhhccccc-CC-------CCCCCccc----chhhhh--HHHHHHHHHhCCCEEEeeccH
Confidence 678999999 98844 789999864310 00 01233444 888888 999999999999999999999
Q ss_pred ccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCCccCCc-hhHHHHHHHHHHHHHHHh
Q 019395 86 WIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWG-DSNVADTVAVIDFLAARY 164 (341)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~~w~-~~~~~~~~~~~~~la~~y 164 (341)
.+++ |...+.++++++++++++|+.|.++||.++|+|||+..++.-.+.+ .|. ++.++.|.++.+.++++|
T Consensus 78 sRI~-P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~G-------GW~n~~~v~~F~~YA~~~~~~f 149 (469)
T PRK13511 78 SRIF-PDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPEALHSNG-------DWLNRENIDHFVRYAEFCFEEF 149 (469)
T ss_pred hhcC-cCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcHHHHHcC-------CCCCHHHHHHHHHHHHHHHHHh
Confidence 7555 4433467899999999999999999999999999997665433322 277 899999999999999999
Q ss_pred CCCCceeEEEeecCCCC
Q 019395 165 ANRPSLAAIELINEPLA 181 (341)
Q Consensus 165 ~~~~~v~~~el~NEP~~ 181 (341)
+| ... |-.+|||+.
T Consensus 150 gd-Vk~--W~T~NEP~~ 163 (469)
T PRK13511 150 PE-VKY--WTTFNEIGP 163 (469)
T ss_pred CC-CCE--EEEccchhh
Confidence 99 655 559999984
No 8
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=99.70 E-value=2.3e-16 Score=152.58 Aligned_cols=148 Identities=17% Similarity=0.225 Sum_probs=117.1
Q ss_pred ceeeeccCC-CCccc--CCcccccccccCCcchhhhhhhhcCcchHHHHHHHHHhhccCHHHHHHHHHCCCCEEEcCccc
Q 019395 9 TRLTADYGS-SSWDD--SDPSVFKLNIVSTLRGEYQITNGFGPDKAPQVLQDHWDSYITDEDFKFLSSNGINAVRIPVGW 85 (341)
Q Consensus 9 ~~~~~~~~~-~~~~~--~~p~~f~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~e~d~~~i~~~G~N~VRlpi~~ 85 (341)
|..||+.|. |+|.+ ++||+++.+.. ... ....+.|. +||+.| ++|+++|+++|+|+.|++|+|
T Consensus 11 G~AtsA~QvEG~~~~~Gkg~siwD~~~~-~~~-------~~~~~~a~----d~yhry--~eDi~L~~~lG~~~yRfSIsW 76 (467)
T TIGR01233 11 GGATAAYQAEGATHTDGKGPVAWDKYLE-DNY-------WYTAEPAS----DFYHKY--PVDLELAEEYGVNGIRISIAW 76 (467)
T ss_pred eeechhhhcCCCcCCCCCcCchhhcccc-CCC-------CCCCCccC----chhhhH--HHHHHHHHHcCCCEEEEecch
Confidence 678999999 99854 78999986431 000 01223344 888888 999999999999999999999
Q ss_pred ccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCCccCCc-hhHHHHHHHHHHHHHHHh
Q 019395 86 WIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWG-DSNVADTVAVIDFLAARY 164 (341)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~~w~-~~~~~~~~~~~~~la~~y 164 (341)
.+++ |...++++++++++++++|+.|.++||.++|+|||+..++.-.+.+| |. ++.++.|.++.+.++++|
T Consensus 77 sRI~-P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~GG-------W~n~~~v~~F~~YA~~~f~~f 148 (467)
T TIGR01233 77 SRIF-PTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPEALHSNGD-------FLNRENIEHFIDYAAFCFEEF 148 (467)
T ss_pred hhcc-CCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcHHHHHcCC-------CCCHHHHHHHHHHHHHHHHHh
Confidence 7555 44334678999999999999999999999999999976654333323 87 899999999999999999
Q ss_pred CCCCceeEEEeecCCCC
Q 019395 165 ANRPSLAAIELINEPLA 181 (341)
Q Consensus 165 ~~~~~v~~~el~NEP~~ 181 (341)
++ .. -|-.+|||+.
T Consensus 149 gd-Vk--~WiT~NEP~~ 162 (467)
T TIGR01233 149 PE-VN--YWTTFNEIGP 162 (467)
T ss_pred CC-CC--EEEEecchhh
Confidence 85 33 3679999984
No 9
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=99.69 E-value=6.9e-17 Score=156.29 Aligned_cols=157 Identities=18% Similarity=0.268 Sum_probs=118.0
Q ss_pred ceeeeccCC-CCccc--CCccccccccc--C----Ccchhhhhhhh-cCcchHHHHHHHHHhhccCHHHHHHHHHCCCCE
Q 019395 9 TRLTADYGS-SSWDD--SDPSVFKLNIV--S----TLRGEYQITNG-FGPDKAPQVLQDHWDSYITDEDFKFLSSNGINA 78 (341)
Q Consensus 9 ~~~~~~~~~-~~~~~--~~p~~f~~~~~--~----~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~e~d~~~i~~~G~N~ 78 (341)
|..||+.|. |+|.+ +.||+++.+.- . .+.+.- .... ...+.|. +||+.| ++|++.|+++|+|+
T Consensus 13 G~AtsA~QiEGa~~e~Gkg~siwD~~~~~~~~~~~~~~~~~-~~~~~~~~~~A~----D~Yhry--~EDI~Lm~elG~~~ 85 (477)
T PRK15014 13 GGAVAAHQVEGGWNKGGKGPSICDVLTGGAHGVPREITKEV-VPGKYYPNHEAV----DFYGHY--KEDIKLFAEMGFKC 85 (477)
T ss_pred eeecHHHHhCCCcCCCCCcccHhhccccccccCcccccccc-ccCCcCCCCccc----Cccccc--HHHHHHHHHcCCCE
Confidence 678999999 99854 78999886430 0 000000 0000 1223344 899999 99999999999999
Q ss_pred EEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCCccCCc-hhHHHHHHHHH
Q 019395 79 VRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWG-DSNVADTVAVI 157 (341)
Q Consensus 79 VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~~w~-~~~~~~~~~~~ 157 (341)
.|++|.|..+++....+..+++++++++++|+.|.++||.++|+|||+..++.-.+. ...|. ++.++.|++++
T Consensus 86 yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP~~L~~~------yGGW~n~~~~~~F~~Ya 159 (477)
T PRK15014 86 FRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPLHLVQQ------YGSWTNRKVVDFFVRFA 159 (477)
T ss_pred EEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHh------cCCCCChHHHHHHHHHH
Confidence 999999976654322334688899999999999999999999999999766543221 12276 88999999999
Q ss_pred HHHHHHhCCCCceeEEEeecCCC
Q 019395 158 DFLAARYANRPSLAAIELINEPL 180 (341)
Q Consensus 158 ~~la~~y~~~~~v~~~el~NEP~ 180 (341)
+.++++|++.... |-++|||+
T Consensus 160 ~~~f~~fgdrVk~--WiT~NEp~ 180 (477)
T PRK15014 160 EVVFERYKHKVKY--WMTFNEIN 180 (477)
T ss_pred HHHHHHhcCcCCE--EEEecCcc
Confidence 9999999998766 44999997
No 10
>PLN02849 beta-glucosidase
Probab=99.69 E-value=1.1e-16 Score=155.59 Aligned_cols=150 Identities=23% Similarity=0.277 Sum_probs=118.8
Q ss_pred ceeeeccCC-CCccc--CCcccccccccCCcchhhhhhhhcCcchHHHHHHHHHhhccCHHHHHHHHHCCCCEEEcCccc
Q 019395 9 TRLTADYGS-SSWDD--SDPSVFKLNIVSTLRGEYQITNGFGPDKAPQVLQDHWDSYITDEDFKFLSSNGINAVRIPVGW 85 (341)
Q Consensus 9 ~~~~~~~~~-~~~~~--~~p~~f~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~e~d~~~i~~~G~N~VRlpi~~ 85 (341)
|..||+.|. |+|.+ ++||+++.+... . .....+.|. +||+.| ++|++.||++|+|+.|++|.|
T Consensus 37 G~AtsA~QiEGa~~~~Gkg~SiwD~~~~~-~-------~~~~~~~a~----D~YhrY--~eDI~Lm~~lG~~aYRfSIsW 102 (503)
T PLN02849 37 GAGTSAYQWEGAFDEDGRKPSVWDTFLHS-R-------NMSNGDIAC----DGYHKY--KEDVKLMVETGLDAFRFSISW 102 (503)
T ss_pred EeechhhhhcCCcCCCCCcCcceeeeecc-C-------CCCCCCccc----cHHHhH--HHHHHHHHHcCCCeEEEeccH
Confidence 678999999 98854 789999974311 1 111233344 788888 999999999999999999999
Q ss_pred ccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCCccCCc-hhHHHHHHHHHHHHHHHh
Q 019395 86 WIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWG-DSNVADTVAVIDFLAARY 164 (341)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~~w~-~~~~~~~~~~~~~la~~y 164 (341)
.+++ |...++++++++++++++|+.|.++||.++|+|||+.-++.-.+. ...|. ++.++.|+++.+.++++|
T Consensus 103 sRI~-P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dlP~~L~~~------yGGW~nr~~v~~F~~YA~~~f~~f 175 (503)
T PLN02849 103 SRLI-PNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDHPQYLEDD------YGGWINRRIIKDFTAYADVCFREF 175 (503)
T ss_pred HhcC-cCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCCcHHHHHh------cCCcCCchHHHHHHHHHHHHHHHh
Confidence 6554 444356789999999999999999999999999999765433221 12277 889999999999999999
Q ss_pred CCCCceeEEEeecCCCC
Q 019395 165 ANRPSLAAIELINEPLA 181 (341)
Q Consensus 165 ~~~~~v~~~el~NEP~~ 181 (341)
+|....+. .+|||+.
T Consensus 176 gDrVk~Wi--T~NEP~~ 190 (503)
T PLN02849 176 GNHVKFWT--TINEANI 190 (503)
T ss_pred cCcCCEEE--Eecchhh
Confidence 99877644 9999984
No 11
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=99.68 E-value=8.9e-17 Score=155.24 Aligned_cols=159 Identities=13% Similarity=0.161 Sum_probs=118.2
Q ss_pred ceeeeccCC-CCccc--CCcccccccccC--Ccch------hhhh-hhh-cCcchHHHHHHHHHhhccCHHHHHHHHHCC
Q 019395 9 TRLTADYGS-SSWDD--SDPSVFKLNIVS--TLRG------EYQI-TNG-FGPDKAPQVLQDHWDSYITDEDFKFLSSNG 75 (341)
Q Consensus 9 ~~~~~~~~~-~~~~~--~~p~~f~~~~~~--~~~~------~~~~-~~~-~g~~~~~~~~~~~~~~~~~e~d~~~i~~~G 75 (341)
|..||+.|. |+|.+ +.||+++.+... .+.. .... ... ...+.|. +||+.| ++|+++|+++|
T Consensus 11 G~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~----D~Yhry--~eDi~l~~~lG 84 (474)
T PRK09852 11 GGALAANQSEGAFREGGKGLTTVDMIPHGEHRMAVKLGLEKRFQLRDDEFYPSHEAI----DFYHRY--KEDIALMAEMG 84 (474)
T ss_pred eccchHhhcCCCcCCCCCCCchhhccccCCCcccccccccccccccccCcCCCCccC----chhhhh--HHHHHHHHHcC
Confidence 678999999 99854 789998864321 0000 0000 000 1233444 889888 99999999999
Q ss_pred CCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCCccCCc-hhHHHHHH
Q 019395 76 INAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWG-DSNVADTV 154 (341)
Q Consensus 76 ~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~~w~-~~~~~~~~ 154 (341)
+|+.|++|+|..+++...++..+++++++++++|+.|+++||.+||+|||+..++.-.+. ...|. ++.++.|.
T Consensus 85 ~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~~l~~~------~GGW~~~~~~~~F~ 158 (474)
T PRK09852 85 FKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPMHLVTE------YGSWRNRKMVEFFS 158 (474)
T ss_pred CCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHh------cCCCCCHHHHHHHH
Confidence 999999999976664332334678899999999999999999999999999655432221 12377 78999999
Q ss_pred HHHHHHHHHhCCCCceeEEEeecCCCC
Q 019395 155 AVIDFLAARYANRPSLAAIELINEPLA 181 (341)
Q Consensus 155 ~~~~~la~~y~~~~~v~~~el~NEP~~ 181 (341)
++++.++++|++.... |-.+|||+.
T Consensus 159 ~ya~~~~~~fgd~Vk~--WiTfNEPn~ 183 (474)
T PRK09852 159 RYARTCFEAFDGLVKY--WLTFNEINI 183 (474)
T ss_pred HHHHHHHHHhcCcCCe--EEeecchhh
Confidence 9999999999998776 449999983
No 12
>PLN02814 beta-glucosidase
Probab=99.68 E-value=1.4e-16 Score=154.83 Aligned_cols=150 Identities=22% Similarity=0.283 Sum_probs=118.8
Q ss_pred ceeeeccCC-CCccc--CCcccccccccCCcchhhhhhhhcCcchHHHHHHHHHhhccCHHHHHHHHHCCCCEEEcCccc
Q 019395 9 TRLTADYGS-SSWDD--SDPSVFKLNIVSTLRGEYQITNGFGPDKAPQVLQDHWDSYITDEDFKFLSSNGINAVRIPVGW 85 (341)
Q Consensus 9 ~~~~~~~~~-~~~~~--~~p~~f~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~e~d~~~i~~~G~N~VRlpi~~ 85 (341)
|..||++|. |+|.+ ++||+++.+.. .. .....+.|. +||+.| ++|++.||++|+|+.|++|.|
T Consensus 35 G~AtaA~QiEGa~~~~gkg~siwD~~~~-----~~---~~~~~~~a~----D~Yhry--~EDI~L~k~lG~~ayRfSIsW 100 (504)
T PLN02814 35 GAATSAYQWEGAVDEDGRTPSVWDTTSH-----CY---NGGNGDIAS----DGYHKY--KEDVKLMAEMGLESFRFSISW 100 (504)
T ss_pred eeechhhhhcCCcCCCCCccchhheeee-----cc---CCCCCCccc----cHHHhh--HHHHHHHHHcCCCEEEEeccH
Confidence 678999999 88854 78999987431 10 111233344 788888 999999999999999999999
Q ss_pred ccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCCccCCc-hhHHHHHHHHHHHHHHHh
Q 019395 86 WIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWG-DSNVADTVAVIDFLAARY 164 (341)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~~w~-~~~~~~~~~~~~~la~~y 164 (341)
..++ |...+..+++++++++++|+.|.++||.++|+|||+.-++.-.+. ...|. ++.++.|.++.+.++++|
T Consensus 101 sRI~-P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP~~L~~~------yGGW~n~~~i~~F~~YA~~~f~~f 173 (504)
T PLN02814 101 SRLI-PNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLPQSLEDE------YGGWINRKIIEDFTAFADVCFREF 173 (504)
T ss_pred hhcC-cCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHh------cCCcCChhHHHHHHHHHHHHHHHh
Confidence 7555 443346789999999999999999999999999999766543322 12277 899999999999999999
Q ss_pred CCCCceeEEEeecCCCC
Q 019395 165 ANRPSLAAIELINEPLA 181 (341)
Q Consensus 165 ~~~~~v~~~el~NEP~~ 181 (341)
+|.... |-.+|||+.
T Consensus 174 gdrVk~--WiT~NEP~~ 188 (504)
T PLN02814 174 GEDVKL--WTTINEATI 188 (504)
T ss_pred CCcCCE--EEeccccch
Confidence 997766 449999984
No 13
>PLN02998 beta-glucosidase
Probab=99.67 E-value=1.6e-16 Score=154.23 Aligned_cols=152 Identities=22% Similarity=0.277 Sum_probs=118.8
Q ss_pred ceeeeccCC-CCccc--CCcccccccccCCcchhhhhhhhcCcchHHHHHHHHHhhccCHHHHHHHHHCCCCEEEcCccc
Q 019395 9 TRLTADYGS-SSWDD--SDPSVFKLNIVSTLRGEYQITNGFGPDKAPQVLQDHWDSYITDEDFKFLSSNGINAVRIPVGW 85 (341)
Q Consensus 9 ~~~~~~~~~-~~~~~--~~p~~f~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~e~d~~~i~~~G~N~VRlpi~~ 85 (341)
|..||++|. |+|.+ +.||+++.+.... . ......+.|. +||+.| ++|++.||++|+|+.|++|+|
T Consensus 38 G~AtSA~QvEGa~~~~Gkg~siwD~~~~~~----~--~~~~~~~~a~----D~Yhry--~EDi~lmk~lG~~~YRfSIsW 105 (497)
T PLN02998 38 GSGTSAYQVEGAADEDGRTPSIWDVFAHAG----H--SGVAAGNVAC----DQYHKY--KEDVKLMADMGLEAYRFSISW 105 (497)
T ss_pred eeechHHHhCCCcCCCCCccchhhcccccC----c--CCCCCCcccc----cHHHhh--HHHHHHHHHcCCCeEEeeccH
Confidence 678999999 98854 7899998643211 0 0001233344 889888 999999999999999999999
Q ss_pred ccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCCccCCc-hhHHHHHHHHHHHHHHHh
Q 019395 86 WIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWG-DSNVADTVAVIDFLAARY 164 (341)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~~w~-~~~~~~~~~~~~~la~~y 164 (341)
.+++ |...+.++++++++++++|+.+.++||.++|+|||+..++.-.+. ...|. ++.++.|.++.+.++++|
T Consensus 106 sRI~-P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP~~L~~~------yGGW~n~~~v~~F~~YA~~~~~~f 178 (497)
T PLN02998 106 SRLL-PSGRGPINPKGLQYYNNLIDELITHGIQPHVTLHHFDLPQALEDE------YGGWLSQEIVRDFTAYADTCFKEF 178 (497)
T ss_pred HhcC-cCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHh------hCCcCCchHHHHHHHHHHHHHHHh
Confidence 7555 443346789999999999999999999999999999766543221 12277 789999999999999999
Q ss_pred CCCCceeEEEeecCCCC
Q 019395 165 ANRPSLAAIELINEPLA 181 (341)
Q Consensus 165 ~~~~~v~~~el~NEP~~ 181 (341)
+|+...+ -.+|||+.
T Consensus 179 gdrVk~W--iT~NEP~~ 193 (497)
T PLN02998 179 GDRVSHW--TTINEVNV 193 (497)
T ss_pred cCcCCEE--EEccCcch
Confidence 9977764 49999994
No 14
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=99.67 E-value=2e-16 Score=153.13 Aligned_cols=159 Identities=17% Similarity=0.214 Sum_probs=118.3
Q ss_pred ceeeeccCC-CCccc--CCccccccccc--C-Ccch-hhhhhhh--cCcchHHHHHHHHHhhccCHHHHHHHHHCCCCEE
Q 019395 9 TRLTADYGS-SSWDD--SDPSVFKLNIV--S-TLRG-EYQITNG--FGPDKAPQVLQDHWDSYITDEDFKFLSSNGINAV 79 (341)
Q Consensus 9 ~~~~~~~~~-~~~~~--~~p~~f~~~~~--~-~~~~-~~~~~~~--~g~~~~~~~~~~~~~~~~~e~d~~~i~~~G~N~V 79 (341)
|..||+.|. |+|.+ +.||+++.+.. . .... ....... ...+.|. +||+.| ++|++.||++|+|+.
T Consensus 11 G~AtsA~QiEGa~~~~gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~a~----D~Yhry--~eDi~Lm~~lG~~~y 84 (476)
T PRK09589 11 GGAVAAHQLEGGWNEGGKGISVADVMTAGAHGVPREITEGVIEGKNYPNHEAI----DFYHRY--KEDIALFAEMGFKCF 84 (476)
T ss_pred eeechHhhhcCCcCCCCCCCchhcccccccccCccccccCccCCCcCCCcccc----cHHHhh--HHHHHHHHHcCCCEE
Confidence 678999999 98854 78999886431 0 0000 0000000 1233344 889889 999999999999999
Q ss_pred EcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCCccCCc-hhHHHHHHHHHH
Q 019395 80 RIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWG-DSNVADTVAVID 158 (341)
Q Consensus 80 Rlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~~w~-~~~~~~~~~~~~ 158 (341)
|++|+|.++++....+..+++++++++++|+.|.++||.++|+|||+..++.-.+.. ..|. ++.++.|.++.+
T Consensus 85 RfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP~~L~~~y------GGW~n~~~i~~F~~YA~ 158 (476)
T PRK09589 85 RTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMPYHLVTEY------GGWRNRKLIDFFVRFAE 158 (476)
T ss_pred EeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCHHHHHhc------CCcCChHHHHHHHHHHH
Confidence 999999765543223346889999999999999999999999999997665432221 2277 889999999999
Q ss_pred HHHHHhCCCCceeEEEeecCCCC
Q 019395 159 FLAARYANRPSLAAIELINEPLA 181 (341)
Q Consensus 159 ~la~~y~~~~~v~~~el~NEP~~ 181 (341)
.++++|+|.... |-.+|||+.
T Consensus 159 ~~f~~fgdrVk~--WiT~NEp~~ 179 (476)
T PRK09589 159 VVFTRYKDKVKY--WMTFNEINN 179 (476)
T ss_pred HHHHHhcCCCCE--EEEecchhh
Confidence 999999997766 449999973
No 15
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.67 E-value=3.4e-15 Score=141.59 Aligned_cols=248 Identities=19% Similarity=0.274 Sum_probs=134.8
Q ss_pred HHHhhccCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCC--CCC-----
Q 019395 57 DHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA--PGS----- 129 (341)
Q Consensus 57 ~~~~~~~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~--~g~----- 129 (341)
++|+....++|++.|+++|+|+|||....|..++|.++ .|+ ++.||++|+.|.++||+|||.+-.. |..
T Consensus 5 e~~~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG-~yd---F~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~ 80 (374)
T PF02449_consen 5 EQWPEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEG-QYD---FSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKY 80 (374)
T ss_dssp GGS-CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTT-B------HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCS
T ss_pred ccCCHHHHHHHHHHHHHcCCCEEEEEEechhhccCCCC-eee---cHHHHHHHHHHHhccCeEEEEecccccccchhhhc
Confidence 45555455999999999999999996545567788764 675 8999999999999999999977432 211
Q ss_pred -------CCCCC-CCCCCCCccCCchhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCC-------------------
Q 019395 130 -------QNGNE-HSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP------------------- 182 (341)
Q Consensus 130 -------~~~~~-~~g~~~~~~~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~------------------- 182 (341)
.++.. ..|.+...+..++...+.+.++++.|++||+++|+|++|++-|||...
T Consensus 81 Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~~~~~~~~~~~~f~~wLk~kY 160 (374)
T PF02449_consen 81 PEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGYHRCYSPACQAAFRQWLKEKY 160 (374)
T ss_dssp GCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTCTS--SHHHHHHHHHHHHHHH
T ss_pred ccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCcCcCCChHHHHHHHHHHHHHh
Confidence 01100 112121222233778889999999999999999999999999998640
Q ss_pred ---------------------------C--C----C-----------hHHHHHHHHHHHHHHHhcCCCceEEEe--CC-C
Q 019395 183 ---------------------------G--V----A-----------LDTLKSYYKAGYDAVRKYTSTAYVIMS--NR-L 215 (341)
Q Consensus 183 ---------------------------~--~----~-----------~~~~~~~~~~~~~aIR~~~p~~~v~~~--~~-~ 215 (341)
+ . . .+.+..++....++||+++|+++|... .. .
T Consensus 161 ~ti~~LN~aWgt~~ws~~~~~f~~v~~P~~~~~~~~~~~~~D~~rF~~~~~~~~~~~~~~~ir~~~p~~~vt~n~~~~~~ 240 (374)
T PF02449_consen 161 GTIEALNRAWGTAFWSQRYSSFDEVPPPRPTSSPENPAQWLDWYRFQSDRVAEFFRWQADIIREYDPDHPVTTNFMGSWF 240 (374)
T ss_dssp SSHHHHHHHHTTTGGG---SSGGG---S-S-SS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT-EEE-EE-TT--
T ss_pred CCHHHHHHHHcCCcccCccCcHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCcccccc
Confidence 0 0 0 134667788889999999999988854 11 1
Q ss_pred CCCChhhhhhccCCCCcEEEEeeecCCCCccccCccchhhhHHHHhhhhhhhhhhhccCCCceEEEeecCC---CCCCC-
Q 019395 216 GPADHKELLSFASGLSRVVIDVHYYNLFSNNFNGLNVQQNIDYVNNQRASDLGAVTTSNGPLTFVGEWTCE---WNVKD- 291 (341)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~v~~~H~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~vGE~g~~---~~~~~- 291 (341)
...+...+.+. -.+++.+.|.... ............ +...+ ++.. ..++|++|.|.-.. +...+
T Consensus 241 ~~~d~~~~a~~-----~D~~~~d~Y~~~~-~~~~~~~~~~~a-~~~dl---~R~~--~~~kpf~v~E~~~g~~~~~~~~~ 308 (374)
T PF02449_consen 241 NGIDYFKWAKY-----LDVVSWDSYPDGS-FDFYDDDPYSLA-FNHDL---MRSL--AKGKPFWVMEQQPGPVNWRPYNR 308 (374)
T ss_dssp -SS-HHHHGGG-----SSSEEEEE-HHHH-HTTTT--TTHHH-HHHHH---HHHH--TTT--EEEEEE--S--SSSSS--
T ss_pred CcCCHHHHHhh-----CCcceeccccCcc-cCCCCCCHHHHH-HHHHH---HHhh--cCCCceEeecCCCCCCCCccCCC
Confidence 22222222222 2467888886510 000011111111 11111 1111 34678999999543 11111
Q ss_pred -CCHHHHHHHHHHHHHHHccCCCcEEEeccccC
Q 019395 292 -ASKQDYQRFANAQLDVYGRATFGWAYWAHKCE 323 (341)
Q Consensus 292 -~~~~~~~~~~~~~~~~~~~~~~Gw~~W~~k~~ 323 (341)
..+..++.+. +.++..+.-|-.||.|+..
T Consensus 309 ~~~pg~~~~~~---~~~~A~Ga~~i~~~~wr~~ 338 (374)
T PF02449_consen 309 PPRPGELRLWS---WQAIAHGADGILFWQWRQS 338 (374)
T ss_dssp ---TTHHHHHH---HHHHHTT-S-EEEC-SB--
T ss_pred CCCCCHHHHHH---HHHHHHhCCeeEeeeccCC
Confidence 1122333332 2233356668899999864
No 16
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=99.66 E-value=3e-16 Score=152.08 Aligned_cols=159 Identities=16% Similarity=0.210 Sum_probs=118.5
Q ss_pred ceeeeccCC-CCccc--CCcccccccccC--Cc---chhhh---hhhh--cCcchHHHHHHHHHhhccCHHHHHHHHHCC
Q 019395 9 TRLTADYGS-SSWDD--SDPSVFKLNIVS--TL---RGEYQ---ITNG--FGPDKAPQVLQDHWDSYITDEDFKFLSSNG 75 (341)
Q Consensus 9 ~~~~~~~~~-~~~~~--~~p~~f~~~~~~--~~---~~~~~---~~~~--~g~~~~~~~~~~~~~~~~~e~d~~~i~~~G 75 (341)
|..||+.|. |+|.+ +.||+++.+... .. ...-. ..+. .+.+.|. +||+.| ++|+++||++|
T Consensus 13 G~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~----d~Yhry--~eDi~Lm~~lG 86 (478)
T PRK09593 13 GGATAANQCEGAYNVDGRGLANVDVVPIGEDRFPIITGEKKMFDFEEGYFYPAKEAI----DMYHHY--KEDIALFAEMG 86 (478)
T ss_pred eeechHHHhCCCcCCCCCccchhhccccCcCcccccccccccccccccccCCCCccc----chHHhh--HHHHHHHHHcC
Confidence 678999999 98854 789999863310 01 00000 0000 0233344 889888 99999999999
Q ss_pred CCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCCccCCc-hhHHHHHH
Q 019395 76 INAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWG-DSNVADTV 154 (341)
Q Consensus 76 ~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~~w~-~~~~~~~~ 154 (341)
+|+.|++|+|.++++...++.++++++++++++|+.+.++||.++|+|||+..++.-.+.. ..|. ++.++.|.
T Consensus 87 ~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~~L~~~~------GGW~n~~~v~~F~ 160 (478)
T PRK09593 87 FKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPMHLIEEY------GGWRNRKMVGFYE 160 (478)
T ss_pred CCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCHHHHhhc------CCCCChHHHHHHH
Confidence 9999999999755543223346889999999999999999999999999997665433221 2277 78999999
Q ss_pred HHHHHHHHHhCCCCceeEEEeecCCCC
Q 019395 155 AVIDFLAARYANRPSLAAIELINEPLA 181 (341)
Q Consensus 155 ~~~~~la~~y~~~~~v~~~el~NEP~~ 181 (341)
++.+.++++|++....+ -.+|||+.
T Consensus 161 ~YA~~~~~~fgdrVk~W--iT~NEP~~ 185 (478)
T PRK09593 161 RLCRTLFTRYKGLVKYW--LTFNEINM 185 (478)
T ss_pred HHHHHHHHHhcCcCCEE--Eeecchhh
Confidence 99999999999977764 49999984
No 17
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.59 E-value=2.3e-13 Score=136.83 Aligned_cols=225 Identities=19% Similarity=0.180 Sum_probs=141.3
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCC--CCCCCCCCCCCCCCCc
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA--PGSQNGNEHSATRDGF 142 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~--~g~~~~~~~~g~~~~~ 142 (341)
..||+.||++|+|+||++.. | ..+ ++++.|.++||.|+-++-.. ..... ....+.....
T Consensus 316 ~~d~~l~K~~G~N~vR~sh~------p-----~~~-------~~~~~cD~~GllV~~E~p~~~~~~~~~-~~~~~~~~~~ 376 (604)
T PRK10150 316 VHDHNLMKWIGANSFRTSHY------P-----YSE-------EMLDLADRHGIVVIDETPAVGLNLSFG-AGLEAGNKPK 376 (604)
T ss_pred HHHHHHHHHCCCCEEEeccC------C-----CCH-------HHHHHHHhcCcEEEEeccccccccccc-cccccccccc
Confidence 67999999999999998421 1 111 67899999999999876321 10000 0000000011
Q ss_pred cCCc-----hhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCceEEEeCCC-C
Q 019395 143 QEWG-----DSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRL-G 216 (341)
Q Consensus 143 ~~w~-----~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~v~~~~~~-~ 216 (341)
..|. +...+.+.+.++.+++|++++|.|++|.+.||+.. ..+....+++++++.+|+.||+++|...... .
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~~---~~~~~~~~~~~l~~~~k~~DptR~vt~~~~~~~ 453 (604)
T PRK10150 377 ETYSEEAVNGETQQAHLQAIRELIARDKNHPSVVMWSIANEPAS---REQGAREYFAPLAELTRKLDPTRPVTCVNVMFA 453 (604)
T ss_pred ccccccccchhHHHHHHHHHHHHHHhccCCceEEEEeeccCCCc---cchhHHHHHHHHHHHHHhhCCCCceEEEecccC
Confidence 1222 35667788899999999999999999999999864 2346678899999999999999999987421 1
Q ss_pred CCChhhhhhccCCCCcEEEEeeecCCCCccccCccchhhhHHHHhhhhhhhhhhhccCCCceEEEeecCCCC-------C
Q 019395 217 PADHKELLSFASGLSRVVIDVHYYNLFSNNFNGLNVQQNIDYVNNQRASDLGAVTTSNGPLTFVGEWTCEWN-------V 289 (341)
Q Consensus 217 ~~~~~~~~~~~~~~~~~v~~~H~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~vGE~g~~~~-------~ 289 (341)
...... ....-.|+++|.|..+-.. ..... .........+..+.+..++|++++|||+... .
T Consensus 454 ~~~~~~-----~~~~~Dv~~~N~Y~~wy~~--~~~~~----~~~~~~~~~~~~~~~~~~kP~~isEyg~~~~~~~h~~~~ 522 (604)
T PRK10150 454 TPDTDT-----VSDLVDVLCLNRYYGWYVD--SGDLE----TAEKVLEKELLAWQEKLHKPIIITEYGADTLAGLHSMYD 522 (604)
T ss_pred Cccccc-----ccCcccEEEEcccceecCC--CCCHH----HHHHHHHHHHHHHHHhcCCCEEEEccCCccccccccCCC
Confidence 111011 1223478999888653211 00111 1111111122222222367899999996331 1
Q ss_pred CCCCHHHHHHHHHHHHHHHcc--CCCcEEEecccc
Q 019395 290 KDASKQDYQRFANAQLDVYGR--ATFGWAYWAHKC 322 (341)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~--~~~Gw~~W~~k~ 322 (341)
...+.+....+++..++++++ .-+|-|.|+|..
T Consensus 523 ~~~~ee~q~~~~~~~~~~~~~~p~~~G~~iW~~~D 557 (604)
T PRK10150 523 DMWSEEYQCAFLDMYHRVFDRVPAVVGEQVWNFAD 557 (604)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCceEEEEEEeeec
Confidence 223466667778888877764 678999999874
No 18
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=99.59 E-value=3.2e-13 Score=118.32 Aligned_cols=230 Identities=19% Similarity=0.312 Sum_probs=142.6
Q ss_pred CHHHHHHHHHCCCCEEEcCcccccccCCC--CCCCccc--chHHHHHHHHHHHHHcCCeEEEecCCC-----CCCCCCCC
Q 019395 64 TDEDFKFLSSNGINAVRIPVGWWIANDPT--PPKPFVG--GSSKVLDNAFDWAEKYGVKVIVDLHAA-----PGSQNGNE 134 (341)
Q Consensus 64 ~e~d~~~i~~~G~N~VRlpi~~~~~~~~~--~~~~~~~--~~l~~ld~~i~~a~~~gi~vildlh~~-----~g~~~~~~ 134 (341)
.++-|+.||+.|+|.|||.| +.+|. .+..|-. ..++..-++-+.|++.||+|++|+|-. |+.|.
T Consensus 65 ~qD~~~iLK~~GvNyvRlRv----wndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ~--- 137 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRV----WNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQK--- 137 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEE----ecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccchhhccChhhcC---
Confidence 36778999999999999987 23332 2233422 246666677789999999999999954 33222
Q ss_pred CCCCCCCccCCc----hhHHHHHHHHHHHHHHHhCCCC-ceeEEEeecCCCC-------CCCChHHHHHHHHHHHHHHHh
Q 019395 135 HSATRDGFQEWG----DSNVADTVAVIDFLAARYANRP-SLAAIELINEPLA-------PGVALDTLKSYYKAGYDAVRK 202 (341)
Q Consensus 135 ~~g~~~~~~~w~----~~~~~~~~~~~~~la~~y~~~~-~v~~~el~NEP~~-------~~~~~~~~~~~~~~~~~aIR~ 202 (341)
.+..|. ...+....++-+...+.+++.- .+-..++-||-+. .....+.+..+..+.+++||+
T Consensus 138 ------kPkaW~~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avre 211 (403)
T COG3867 138 ------KPKAWENLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVRE 211 (403)
T ss_pred ------CcHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhh
Confidence 344565 2333444466666666666543 2334679999765 223677899999999999999
Q ss_pred cCCCceEEEeCCCC--CCChhhhhhcc--CCCCcEEEEeeecCCCCccccCccchhhhHHHHhhhhhhhhhhhccCCCce
Q 019395 203 YTSTAYVIMSNRLG--PADHKELLSFA--SGLSRVVIDVHYYNLFSNNFNGLNVQQNIDYVNNQRASDLGAVTTSNGPLT 278 (341)
Q Consensus 203 ~~p~~~v~~~~~~~--~~~~~~~~~~~--~~~~~~v~~~H~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv 278 (341)
++|+.+|+++-.-+ .+-+..+.+.. .+-+..|+...+|+.|+. .+..+. ..+..++...++.|
T Consensus 212 v~p~ikv~lHla~g~~n~~y~~~fd~ltk~nvdfDVig~SyYpyWhg---------tl~nL~----~nl~dia~rY~K~V 278 (403)
T COG3867 212 VSPTIKVALHLAEGENNSLYRWIFDELTKRNVDFDVIGSSYYPYWHG---------TLNNLT----TNLNDIASRYHKDV 278 (403)
T ss_pred cCCCceEEEEecCCCCCchhhHHHHHHHHcCCCceEEeeeccccccC---------cHHHHH----hHHHHHHHHhcCeE
Confidence 99999999983211 12223333321 355678899888866542 122221 22334455557779
Q ss_pred EEEeecCCCCC---CC---------------CCHHHHHHHHHHHHHHH----ccCCCcEEEec
Q 019395 279 FVGEWTCEWNV---KD---------------ASKQDYQRFANAQLDVY----GRATFGWAYWA 319 (341)
Q Consensus 279 ~vGE~g~~~~~---~~---------------~~~~~~~~~~~~~~~~~----~~~~~Gw~~W~ 319 (341)
+|-|-+.+++. ++ .+......|+++.+++- ..++.|-|||.
T Consensus 279 mV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~nvp~~~GlGvFYWE 341 (403)
T COG3867 279 MVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVKNVPKSNGLGVFYWE 341 (403)
T ss_pred EEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHHhCCCCCceEEEEec
Confidence 99998764421 00 01122345555555443 34689999995
No 19
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=99.52 E-value=3.4e-14 Score=134.81 Aligned_cols=156 Identities=21% Similarity=0.248 Sum_probs=121.4
Q ss_pred ceeeeccCC-CCccc--CCcccccccccCCcchhhhhhhhcCcchHHHHHHHHHhhccCHHHHHHHHHCCCCEEEcCccc
Q 019395 9 TRLTADYGS-SSWDD--SDPSVFKLNIVSTLRGEYQITNGFGPDKAPQVLQDHWDSYITDEDFKFLSSNGINAVRIPVGW 85 (341)
Q Consensus 9 ~~~~~~~~~-~~~~~--~~p~~f~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~e~d~~~i~~~G~N~VRlpi~~ 85 (341)
|.+|+++|. |.+.+ +.||+++.+...... ..+.....+.|. ++|+.| ++|++.|+++|+++.|++|+|
T Consensus 44 GtAtSAyQ~EGA~~e~gRg~svWD~f~~~~p~---~~~~~~ngdva~----D~Yh~y--keDv~Lmk~lgv~afRFSIsW 114 (524)
T KOG0626|consen 44 GTATSAYQVEGAANEDGRGPSVWDTFTHKYPG---KICDGSNGDVAV----DFYHRY--KEDVKLMKELGVDAFRFSISW 114 (524)
T ss_pred eccchHHHhhhhhccCCCCCchhhhhhccCCc---ccccCCCCCeec----hhhhhh--HHHHHHHHHcCCCeEEEEeeh
Confidence 567889998 87754 789999875522111 122222234454 677777 999999999999999999999
Q ss_pred ccccCCCC-CCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCCccCCc-hhHHHHHHHHHHHHHHH
Q 019395 86 WIANDPTP-PKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWG-DSNVADTVAVIDFLAAR 163 (341)
Q Consensus 86 ~~~~~~~~-~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~~w~-~~~~~~~~~~~~~la~~ 163 (341)
.+.++... ....++++++++..+|+...++||.++|+|.|..-+|...+..| .|. +..++.|.++.+.+.++
T Consensus 115 SRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTLfHwDlPq~LeDeYg------GwLn~~ivedF~~yA~~CF~~ 188 (524)
T KOG0626|consen 115 SRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTLFHWDLPQALEDEYG------GWLNPEIVEDFRDYADLCFQE 188 (524)
T ss_pred HhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEecCCCCHHHHHHhc------cccCHHHHHHHHHHHHHHHHH
Confidence 87765444 34578899999999999999999999999999987776554322 277 88999999999999999
Q ss_pred hCCCCceeEEEeecCCCC
Q 019395 164 YANRPSLAAIELINEPLA 181 (341)
Q Consensus 164 y~~~~~v~~~el~NEP~~ 181 (341)
|+|+... |-.+|||+.
T Consensus 189 fGDrVK~--WiT~NEP~v 204 (524)
T KOG0626|consen 189 FGDRVKH--WITFNEPNV 204 (524)
T ss_pred hccccee--eEEecccce
Confidence 9997665 559999994
No 20
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=99.51 E-value=5.2e-14 Score=130.48 Aligned_cols=259 Identities=13% Similarity=0.096 Sum_probs=162.1
Q ss_pred HHHHHHHHHhhccCHHHHHHHHHCCCCEEEcCccc-ccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCC--C
Q 019395 51 APQVLQDHWDSYITDEDFKFLSSNGINAVRIPVGW-WIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA--P 127 (341)
Q Consensus 51 ~~~~~~~~~~~~~~e~d~~~i~~~G~N~VRlpi~~-~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~--~ 127 (341)
+...+-.||......+|++.++.+|++.+|+.|-- ....+ ..+....+....+++.+++.|..++|+|++.+-.- .
T Consensus 15 anikmw~~~~~~ei~~dle~a~~vg~k~lR~fiLDgEdc~d-~~G~~na~s~~~y~~~fla~a~~l~lkvlitlivg~~h 93 (587)
T COG3934 15 ANIKMWPAIGNREIKADLEPAGFVGVKDLRLFILDGEDCRD-KEGYRNAGSNVWYAAWFLAPAGYLDLKVLITLIVGLKH 93 (587)
T ss_pred hhhhHHHHhhhhhhhcccccccCccceeEEEEEecCcchhh-hhceecccccHHHHHHHhhhcccCcceEEEEEeecccc
Confidence 34445567766666899999999999999996421 11111 11222223359999999999999999999987532 1
Q ss_pred -CCCCC--CCCCCCCCCccCCchhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCC-CCCChHHHHHHHHHHHHHHHhc
Q 019395 128 -GSQNG--NEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLA-PGVALDTLKSYYKAGYDAVRKY 203 (341)
Q Consensus 128 -g~~~~--~~~~g~~~~~~~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~-~~~~~~~~~~~~~~~~~aIR~~ 203 (341)
|+.|- -+.+++.+......++.+..+.++++.|++.||.+|+|.+|.+-|||.. .+.+..++..|...++..|+.+
T Consensus 94 mgg~Nw~Ipwag~~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l~Ne~lv~~p~s~N~f~~w~~emy~yiK~l 173 (587)
T COG3934 94 MGGTNWRIPWAGEQSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWALRNEPLVEAPISVNNFWDWSGEMYAYIKWL 173 (587)
T ss_pred cCcceeEeecCCCCCccccccchhhcccHHHHHHHHhhhhccChHHHHHHhcCCccccccCChhHHHHHHHHHHHHhhcc
Confidence 11110 1111222222222256667788999999999999999999999999876 2456679999999999999999
Q ss_pred CCCceEEEeCCCCCCChhhhhhccCCCCcEEEEeeecCCCCccccCccchhhhHHHHhhhhhhhhhhhccCC-CceEEEe
Q 019395 204 TSTAYVIMSNRLGPADHKELLSFASGLSRVVIDVHYYNLFSNNFNGLNVQQNIDYVNNQRASDLGAVTTSNG-PLTFVGE 282 (341)
Q Consensus 204 ~p~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~H~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~pv~vGE 282 (341)
||+++|.+++.... +..+...-....-..-+.|.|..|+.+ + ..+....+...+.+..+.-+ .||++.|
T Consensus 174 dd~hlvsvGD~~sp--~~~~~pyN~r~~vDya~~hLY~hyd~s-----l---~~r~s~~yg~~~l~i~~~~g~~pV~lee 243 (587)
T COG3934 174 DDGHLVSVGDPASP--WPQYAPYNARFYVDYAANHLYRHYDTS-----L---VSRVSTVYGKPYLDIPTIMGWQPVNLEE 243 (587)
T ss_pred CCCCeeecCCcCCc--ccccCCcccceeeccccchhhhhccCC-----h---hheeeeeecchhhccchhcccceeeccc
Confidence 99999999864221 111111100111123678888654421 1 01111111111122223334 7899999
Q ss_pred ecCCCCCCCCCHHHHHHHHHHHHHHHccCCCcEEEeccccC
Q 019395 283 WTCEWNVKDASKQDYQRFANAQLDVYGRATFGWAYWAHKCE 323 (341)
Q Consensus 283 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~W~~k~~ 323 (341)
||.+..........+..|... ++...+.|..+||+...
T Consensus 244 fGfsta~g~e~s~ayfiw~~l---al~~ggdGaLiwclsdf 281 (587)
T COG3934 244 FGFSTAFGQENSPAYFIWIRL---ALDTGGDGALIWCLSDF 281 (587)
T ss_pred cCCcccccccccchhhhhhhh---HHhhcCCceEEEEecCC
Confidence 998764333333445555544 56667889999999744
No 21
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=99.34 E-value=2.2e-10 Score=105.40 Aligned_cols=120 Identities=19% Similarity=0.275 Sum_probs=83.8
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCCccC
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQE 144 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~~ 144 (341)
+.|+..||++|+|+||+... |. . .++++.|.++||.|+.++........ ...+.. ....
T Consensus 39 ~~d~~l~k~~G~N~iR~~h~------p~--~----------~~~~~~cD~~GilV~~e~~~~~~~~~--~~~~~~-~~~~ 97 (298)
T PF02836_consen 39 ERDLELMKEMGFNAIRTHHY------PP--S----------PRFYDLCDELGILVWQEIPLEGHGSW--QDFGNC-NYDA 97 (298)
T ss_dssp HHHHHHHHHTT-SEEEETTS----------S----------HHHHHHHHHHT-EEEEE-S-BSCTSS--SSTSCT-SCTT
T ss_pred HHHHHHHHhcCcceEEcccc------cC--c----------HHHHHHHhhcCCEEEEeccccccCcc--ccCCcc-ccCC
Confidence 89999999999999998431 11 1 27789999999999998754211000 000100 0000
Q ss_pred CchhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCceEEEeC
Q 019395 145 WGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSN 213 (341)
Q Consensus 145 w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~v~~~~ 213 (341)
-.+...+.+.+-++.+++|++++|.|+.|.+.||+ ....+++++++.+|+.||+++|....
T Consensus 98 ~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~--------~~~~~~~~l~~~~k~~DptRpv~~~~ 158 (298)
T PF02836_consen 98 DDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES--------DYREFLKELYDLVKKLDPTRPVTYAS 158 (298)
T ss_dssp TSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS--------HHHHHHHHHHHHHHHH-TTSEEEEET
T ss_pred CCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC--------ccccchhHHHHHHHhcCCCCceeecc
Confidence 01466778889999999999999999999999999 56677889999999999999998875
No 22
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=99.21 E-value=3e-09 Score=95.58 Aligned_cols=204 Identities=17% Similarity=0.204 Sum_probs=126.2
Q ss_pred cccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCCccCCc-----hhHHHHHHHHHHHHH
Q 019395 87 IANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWG-----DSNVADTVAVIDFLA 161 (341)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~~w~-----~~~~~~~~~~~~~la 161 (341)
...+|.++ .+ .++.+|+++++|+++||+| ..|..- +++ ..+.|. +...+.+.++++.++
T Consensus 4 ~~~ep~~G-~~---n~~~~D~~~~~a~~~gi~v--~gH~l~------W~~----~~P~W~~~~~~~~~~~~~~~~i~~v~ 67 (254)
T smart00633 4 DSTEPSRG-QF---NFSGADAIVNFAKENGIKV--RGHTLV------WHS----QTPDWVFNLSKETLLARLENHIKTVV 67 (254)
T ss_pred ccccCCCC-cc---ChHHHHHHHHHHHHCCCEE--EEEEEe------ecc----cCCHhhhcCCHHHHHHHHHHHHHHHH
Confidence 34455553 44 3899999999999999997 233221 000 112243 355678889999999
Q ss_pred HHhCCCCceeEEEeecCCCCCCC------ChHHHH--HHHHHHHHHHHhcCCCceEEEeCCC-CCC--Ch---hhhh---
Q 019395 162 ARYANRPSLAAIELINEPLAPGV------ALDTLK--SYYKAGYDAVRKYTSTAYVIMSNRL-GPA--DH---KELL--- 224 (341)
Q Consensus 162 ~~y~~~~~v~~~el~NEP~~~~~------~~~~~~--~~~~~~~~aIR~~~p~~~v~~~~~~-~~~--~~---~~~~--- 224 (341)
+||++. |..||++|||...+. ...... .|+..+++++|+++|+..+++.+-. .+. .. ..+.
T Consensus 68 ~ry~g~--i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Ndy~~~~~~~k~~~~~~~v~~l 145 (254)
T smart00633 68 GRYKGK--IYAWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYNDYNTEEPNAKRQAIYELVKKL 145 (254)
T ss_pred HHhCCc--ceEEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEeccCCcCccHHHHHHHHHHHHH
Confidence 999985 666999999986321 111112 6889999999999999999997521 111 11 1111
Q ss_pred -hccCCCCcEEEEeeecCCCCccccCccchhhhHHHHhhhhhhhhhhhccCCCceEEEeecCCCCCCCCCHHHHHHHHHH
Q 019395 225 -SFASGLSRVVIDVHYYNLFSNNFNGLNVQQNIDYVNNQRASDLGAVTTSNGPLTFVGEWTCEWNVKDASKQDYQRFANA 303 (341)
Q Consensus 225 -~~~~~~~~~v~~~H~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~vGE~g~~~~~~~~~~~~~~~~~~~ 303 (341)
....+.+-+-+..|.+... .+ ++.+. +.+..+++. +.||+|+|+...... +.+...+++++
T Consensus 146 ~~~g~~iDgiGlQ~H~~~~~------~~----~~~~~----~~l~~~~~~-g~pi~iTE~dv~~~~---~~~~qA~~~~~ 207 (254)
T smart00633 146 KAKGVPIDGIGLQSHLSLGS------PN----IAEIR----AALDRFASL-GLEIQITELDISGYP---NPQAQAADYEE 207 (254)
T ss_pred HHCCCccceeeeeeeecCCC------CC----HHHHH----HHHHHHHHc-CCceEEEEeecCCCC---cHHHHHHHHHH
Confidence 1112345566777876321 11 12222 223334444 778999999987642 22555667777
Q ss_pred HHHHHcc--CCCcEEEeccccCCCCC
Q 019395 304 QLDVYGR--ATFGWAYWAHKCEANHW 327 (341)
Q Consensus 304 ~~~~~~~--~~~Gw~~W~~k~~~~~W 327 (341)
.+.++-+ ...|.++|.+... ..|
T Consensus 208 ~l~~~~~~p~v~gi~~Wg~~d~-~~W 232 (254)
T smart00633 208 VFKACLAHPAVTGVTVWGVTDK-YSW 232 (254)
T ss_pred HHHHHHcCCCeeEEEEeCCccC-Ccc
Confidence 7766554 4579999998743 445
No 23
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=99.11 E-value=6.3e-10 Score=109.07 Aligned_cols=259 Identities=17% Similarity=0.201 Sum_probs=125.1
Q ss_pred hHHHHHHHHHhhccCHHHHHHHH-HCCCCEEEcCcccccccCCC--------CC-CCcccchHHHHHHHHHHHHHcCCeE
Q 019395 50 KAPQVLQDHWDSYITDEDFKFLS-SNGINAVRIPVGWWIANDPT--------PP-KPFVGGSSKVLDNAFDWAEKYGVKV 119 (341)
Q Consensus 50 ~~~~~~~~~~~~~~~e~d~~~i~-~~G~N~VRlpi~~~~~~~~~--------~~-~~~~~~~l~~ld~~i~~a~~~gi~v 119 (341)
.+...+...| ...+..++ +.||..||+. +.+-++- .+ .+| .+..||++++...++||++
T Consensus 32 ~a~~~l~~~~-----q~~l~~~~~~~gf~yvR~h---~l~~ddm~~~~~~~~~~~~~Y---nf~~lD~i~D~l~~~g~~P 100 (486)
T PF01229_consen 32 RANLLLRADW-----QEQLRELQEELGFRYVRFH---GLFSDDMMVYSESDEDGIPPY---NFTYLDQILDFLLENGLKP 100 (486)
T ss_dssp -GGGGGBHHH-----HHHHHHHHCCS--SEEEES----TTSTTTT-EEEEETTEEEEE-----HHHHHHHHHHHHCT-EE
T ss_pred chHHHhhHHH-----HHHHHHHHhccCceEEEEE---eeccCchhhccccccCCCCcC---ChHHHHHHHHHHHHcCCEE
Confidence 3444455566 66677775 6899999984 2221110 00 013 3899999999999999999
Q ss_pred EEecCCCCCCCCCCCCCCCCCCccCCc--hhHHHHHHHHHHHHHH----HhCCC-CceeEEEeecCCCCCC----CChHH
Q 019395 120 IVDLHAAPGSQNGNEHSATRDGFQEWG--DSNVADTVAVIDFLAA----RYANR-PSLAAIELINEPLAPG----VALDT 188 (341)
Q Consensus 120 ildlh~~~g~~~~~~~~g~~~~~~~w~--~~~~~~~~~~~~~la~----~y~~~-~~v~~~el~NEP~~~~----~~~~~ 188 (341)
+|.|--.|......... ......+. +...+.+.++++.+++ ||+.. -.-+-||++|||.... .+.++
T Consensus 101 ~vel~f~p~~~~~~~~~--~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiWNEPd~~~f~~~~~~~e 178 (486)
T PF01229_consen 101 FVELGFMPMALASGYQT--VFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIWNEPDLKDFWWDGTPEE 178 (486)
T ss_dssp EEEE-SB-GGGBSS--E--ETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEESS-TTSTTTSGGG-HHH
T ss_pred EEEEEechhhhcCCCCc--cccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccccceeEEeCcCCCcccccCCCCHHH
Confidence 99997666321100000 00000011 3455666666555555 45321 2336699999999732 23457
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEeC-CCCCCC-hhhhhhcc--CCCCcEEEEeeecCCCCccccCccchhhh---HHHHh
Q 019395 189 LKSYYKAGYDAVRKYTSTAYVIMSN-RLGPAD-HKELLSFA--SGLSRVVIDVHYYNLFSNNFNGLNVQQNI---DYVNN 261 (341)
Q Consensus 189 ~~~~~~~~~~aIR~~~p~~~v~~~~-~~~~~~-~~~~~~~~--~~~~~~v~~~H~Y~~~~~~~~~~~~~~~~---~~~~~ 261 (341)
+.++|+.++++||+++|...|.-.+ .+.... ...++.+. ....-..+++|.|..-............+ +.+..
T Consensus 179 y~~ly~~~~~~iK~~~p~~~vGGp~~~~~~~~~~~~~l~~~~~~~~~~DfiS~H~y~~~~~~~~~~~~~~~~~~~~~~~~ 258 (486)
T PF01229_consen 179 YFELYDATARAIKAVDPELKVGGPAFAWAYDEWCEDFLEFCKGNNCPLDFISFHSYGTDSAEDINENMYERIEDSRRLFP 258 (486)
T ss_dssp HHHHHHHHHHHHHHH-TTSEEEEEEEETT-THHHHHHHHHHHHCT---SEEEEEEE-BESESE-SS-EEEEB--HHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCcccCccccccHHHHHHHHHHHHhcCCCCCCEEEEEecccccccccchhHHhhhhhHHHHHH
Confidence 8999999999999999988764221 222111 23444332 23455789999996311111111111111 11111
Q ss_pred hhhhhhhhhhcc--CCCceEEEeecCCCCCCCCCH--HHHHHHHHH-HHHHHccCCCcEEEeccc
Q 019395 262 QRASDLGAVTTS--NGPLTFVGEWTCEWNVKDASK--QDYQRFANA-QLDVYGRATFGWAYWAHK 321 (341)
Q Consensus 262 ~~~~~~~~~~~~--~~~pv~vGE~g~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~Gw~~W~~k 321 (341)
........+... ...|+.++||+.......... ....+|+-. .++......-+..+|++.
T Consensus 259 ~~~~~~~~~~~e~~p~~~~~~tE~n~~~~~~~~~~dt~~~aA~i~k~lL~~~~~~l~~~sywt~s 323 (486)
T PF01229_consen 259 ELKETRPIINDEADPNLPLYITEWNASISPRNPQHDTCFKAAYIAKNLLSNDGAFLDSFSYWTFS 323 (486)
T ss_dssp HHHHHHHHHHTSSSTT--EEEEEEES-SSTT-GGGGSHHHHHHHHH-HHHHGGGT-SEEEES-SB
T ss_pred HHHHHHHHHhhccCCCCceeecccccccCCCcchhccccchhhHHHHHHHhhhhhhhhhhccchh
Confidence 111111112222 245799999997653221111 133444333 666655433468899986
No 24
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=98.92 E-value=6.2e-08 Score=102.48 Aligned_cols=115 Identities=22% Similarity=0.263 Sum_probs=82.6
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEec----CCCCCCCCCCCCCCCCC
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDL----HAAPGSQNGNEHSATRD 140 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildl----h~~~g~~~~~~~~g~~~ 140 (341)
++|++.||++|+|+||++. + |. .+ ++.+.|.++||+|+-+. |.++... .... ..
T Consensus 358 ~~dl~lmK~~g~NavR~sH-y-----P~--~~----------~fydlcDe~GllV~dE~~~e~~g~~~~~-~~~~---~~ 415 (1021)
T PRK10340 358 EKDIQLMKQHNINSVRTAH-Y-----PN--DP----------RFYELCDIYGLFVMAETDVESHGFANVG-DISR---IT 415 (1021)
T ss_pred HHHHHHHHHCCCCEEEecC-C-----CC--CH----------HHHHHHHHCCCEEEECCcccccCccccc-cccc---cc
Confidence 7899999999999999852 1 11 11 67799999999999875 3321100 0000 00
Q ss_pred CccCCchhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCceEEEeC
Q 019395 141 GFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSN 213 (341)
Q Consensus 141 ~~~~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~v~~~~ 213 (341)
.. +...+.+.+-++.+++|++++|.|+.|.+.||... + . ...++++.+|+.||.++|...+
T Consensus 416 ~~----p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~~~-g---~----~~~~~~~~~k~~DptR~v~~~~ 476 (1021)
T PRK10340 416 DD----PQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNESGY-G---C----NIRAMYHAAKALDDTRLVHYEE 476 (1021)
T ss_pred CC----HHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccc-c---H----HHHHHHHHHHHhCCCceEEeCC
Confidence 01 34456677778999999999999999999999853 1 1 2368899999999999997653
No 25
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=98.92 E-value=2.1e-09 Score=80.27 Aligned_cols=78 Identities=22% Similarity=0.325 Sum_probs=49.3
Q ss_pred HHHHhCCCCceeEEEeecC-CCCC---------CCChHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCChhhhhhccCC
Q 019395 160 LAARYANRPSLAAIELINE-PLAP---------GVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRLGPADHKELLSFASG 229 (341)
Q Consensus 160 la~~y~~~~~v~~~el~NE-P~~~---------~~~~~~~~~~~~~~~~aIR~~~p~~~v~~~~~~~~~~~~~~~~~~~~ 229 (341)
+.++|++++.|++|||.|| |... ....+.+.+|++++++.||+++|+++|.++. ++ .....+... ..
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~g~-~~-~~~~~~~~~-~~ 77 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTSGF-WG-GDWEDLEQL-QA 77 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE--B----S-TTHHHHS---
T ss_pred CchhhcCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEeec-cc-CCHHHHHHh-ch
Confidence 4689999999999999999 7621 1234678999999999999999999998762 22 122233333 22
Q ss_pred CCcEEEEeeec
Q 019395 230 LSRVVIDVHYY 240 (341)
Q Consensus 230 ~~~~v~~~H~Y 240 (341)
..-.++++|.|
T Consensus 78 ~~~DvisfH~Y 88 (88)
T PF12876_consen 78 ENLDVISFHPY 88 (88)
T ss_dssp TT-SSEEB-EE
T ss_pred hcCCEEeeecC
Confidence 45579999998
No 26
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=98.92 E-value=1.4e-07 Score=84.97 Aligned_cols=218 Identities=16% Similarity=0.188 Sum_probs=101.3
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCCccC
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQE 144 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~~ 144 (341)
+.|+..|+++|+|+||+ | .++|.. .-|..++.+.+.||||||||-....+.+... ..+.
T Consensus 56 ~rDi~~l~~LgiNtIRV---Y--~vdp~~----------nHd~CM~~~~~aGIYvi~Dl~~p~~sI~r~~------P~~s 114 (314)
T PF03198_consen 56 KRDIPLLKELGINTIRV---Y--SVDPSK----------NHDECMSAFADAGIYVILDLNTPNGSINRSD------PAPS 114 (314)
T ss_dssp HHHHHHHHHHT-SEEEE---S-----TTS------------HHHHHHHHHTT-EEEEES-BTTBS--TTS----------
T ss_pred HHhHHHHHHcCCCEEEE---E--EeCCCC----------CHHHHHHHHHhCCCEEEEecCCCCccccCCC------CcCC
Confidence 89999999999999998 2 344432 2567888899999999999998755544211 1123
Q ss_pred CchhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCC---CChHHHHHHHHHHHHHHHhcCCCceEEEe-CCCCCCCh
Q 019395 145 WGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPG---VALDTLKSYYKAGYDAVRKYTSTAYVIMS-NRLGPADH 220 (341)
Q Consensus 145 w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~---~~~~~~~~~~~~~~~aIR~~~p~~~v~~~-~~~~~~~~ 220 (341)
|..... +....+.+.|+.+++++||-+-||-.... ....-++...+++-+-|++... +.|-|+ ..-.....
T Consensus 115 w~~~l~----~~~~~vid~fa~Y~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~-R~IPVGYsaaD~~~~ 189 (314)
T PF03198_consen 115 WNTDLL----DRYFAVIDAFAKYDNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGY-RSIPVGYSAADDAEI 189 (314)
T ss_dssp --HHHH----HHHHHHHHHHTT-TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS-----EEEEE---TTT
T ss_pred CCHHHH----HHHHHHHHHhccCCceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCC-CCCceeEEccCChhH
Confidence 543333 34445556678899999999999987532 2234566666666667777655 334444 11111111
Q ss_pred -hhhhhcc----CCCCcEEEEeeecCCCCccccCccchhhhHHHHhhhhhhhhhhhccCCCceEEEeecCCCCCCCCCH-
Q 019395 221 -KELLSFA----SGLSRVVIDVHYYNLFSNNFNGLNVQQNIDYVNNQRASDLGAVTTSNGPLTFVGEWTCEWNVKDASK- 294 (341)
Q Consensus 221 -~~~~~~~----~~~~~~v~~~H~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~vGE~g~~~~~~~~~~- 294 (341)
..+.++. +...-..+.+-.|.+=+. .+.+. ..+......++. ...|++.+||||-... ...-
T Consensus 190 r~~~a~Yl~Cg~~~~~iDf~g~N~Y~WCg~----Stf~~------SGy~~l~~~f~~-y~vPvffSEyGCn~~~-pR~f~ 257 (314)
T PF03198_consen 190 RQDLANYLNCGDDDERIDFFGLNSYEWCGD----STFET------SGYDRLTKEFSN-YSVPVFFSEYGCNTVT-PRTFT 257 (314)
T ss_dssp HHHHHHHTTBTT-----S-EEEEE----SS------HHH------HSHHHHHHHHTT--SS-EEEEEE---SSS-S---T
T ss_pred HHHHHHHhcCCCcccccceeeeccceecCC----Ccccc------ccHHHHHHHhhC-CCCCeEEcccCCCCCC-Cccch
Confidence 1222222 122345777788864321 11110 112222222332 3567999999996421 1111
Q ss_pred HHHHHHHHHHHHHHccCCCcEEEeccccCC
Q 019395 295 QDYQRFANAQLDVYGRATFGWAYWAHKCEA 324 (341)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~Gw~~W~~k~~~ 324 (341)
+...-|-....++|. |-+...|-.|.
T Consensus 258 ev~aly~~~Mt~v~S----GGivYEy~~e~ 283 (314)
T PF03198_consen 258 EVPALYSPEMTDVWS----GGIVYEYFQEA 283 (314)
T ss_dssp HHHHHTSHHHHTTEE----EEEES-SB--S
T ss_pred HhHHhhCccchhhee----ceEEEEEeccC
Confidence 112223334444454 66667776654
No 27
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=98.91 E-value=1.2e-07 Score=100.32 Aligned_cols=115 Identities=18% Similarity=0.225 Sum_probs=82.5
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCC-CCCCCCCCCCCCCCCcc
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA-PGSQNGNEHSATRDGFQ 143 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~-~g~~~~~~~~g~~~~~~ 143 (341)
++||+.||++|+|+||++. + |. . .++.++|-++||+|+-+.-.. .|... .+.....
T Consensus 374 ~~di~lmK~~g~NaVR~sH-y-----P~--~----------p~fydlcDe~GilV~dE~~~e~hg~~~----~~~~~~d- 430 (1027)
T PRK09525 374 VQDILLMKQHNFNAVRCSH-Y-----PN--H----------PLWYELCDRYGLYVVDEANIETHGMVP----MNRLSDD- 430 (1027)
T ss_pred HHHHHHHHHCCCCEEEecC-C-----CC--C----------HHHHHHHHHcCCEEEEecCccccCCcc----ccCCCCC-
Confidence 6799999999999999842 1 11 1 166799999999999885211 01000 0000011
Q ss_pred CCchhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCceEEEeC
Q 019395 144 EWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSN 213 (341)
Q Consensus 144 ~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~v~~~~ 213 (341)
+...+.+.+-++.+++|.+++|.|+.|.+.||+.. +. -..++++.+|+.||.++|...+
T Consensus 431 ---p~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~~-g~-------~~~~l~~~~k~~DptRpV~y~~ 489 (1027)
T PRK09525 431 ---PRWLPAMSERVTRMVQRDRNHPSIIIWSLGNESGH-GA-------NHDALYRWIKSNDPSRPVQYEG 489 (1027)
T ss_pred ---HHHHHHHHHHHHHHHHhCCCCCEEEEEeCccCCCc-Ch-------hHHHHHHHHHhhCCCCcEEECC
Confidence 34556777889999999999999999999999863 11 1367889999999999998864
No 28
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=98.88 E-value=5.9e-08 Score=88.67 Aligned_cols=137 Identities=12% Similarity=0.126 Sum_probs=82.6
Q ss_pred HHHHHHHHHCCCCEEEcCcccccc-c-CC--CC--------C-----CCcccchHHHHHHHHHHHHHcCCeEEEe-cCCC
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIA-N-DP--TP--------P-----KPFVGGSSKVLDNAFDWAEKYGVKVIVD-LHAA 126 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~-~-~~--~~--------~-----~~~~~~~l~~ld~~i~~a~~~gi~vild-lh~~ 126 (341)
+..++..++.|||.||+.+.-... . .+ .+ + ...++++++.+|++|+.|.++||.+-|= +|+.
T Consensus 33 ~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~wg~ 112 (289)
T PF13204_consen 33 EQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRRIEKANELGIEAALVPFWGC 112 (289)
T ss_dssp HHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----HHHHHHHHHHHHHHTT-EEEEESS-HH
T ss_pred HHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEEECC
Confidence 667899999999999997642211 1 11 00 0 1145779999999999999999998554 4522
Q ss_pred CCCCCCCCCCCCCCCccCCchhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCC
Q 019395 127 PGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTST 206 (341)
Q Consensus 127 ~g~~~~~~~~g~~~~~~~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~ 206 (341)
+.. .+.+..|. .....+...++++.|++||+..|+|+ |.|.||=. ....-.+.++++.+.||+.+|.
T Consensus 113 ~~~-~~~Wg~~~-------~~m~~e~~~~Y~~yv~~Ry~~~~Nvi-W~l~gd~~----~~~~~~~~w~~~~~~i~~~dp~ 179 (289)
T PF13204_consen 113 PYV-PGTWGFGP-------NIMPPENAERYGRYVVARYGAYPNVI-WILGGDYF----DTEKTRADWDAMARGIKENDPY 179 (289)
T ss_dssp HHH--------T-------TSS-HHHHHHHHHHHHHHHTT-SSEE-EEEESSS------TTSSHHHHHHHHHHHHHH--S
T ss_pred ccc-cccccccc-------cCCCHHHHHHHHHHHHHHHhcCCCCE-EEecCccC----CCCcCHHHHHHHHHHHHhhCCC
Confidence 210 00011110 01456788899999999999999988 99999981 1234455667888999999998
Q ss_pred ceEEEeCC
Q 019395 207 AYVIMSNR 214 (341)
Q Consensus 207 ~~v~~~~~ 214 (341)
.++.+++.
T Consensus 180 ~L~T~H~~ 187 (289)
T PF13204_consen 180 QLITIHPC 187 (289)
T ss_dssp S-EEEEE-
T ss_pred CcEEEeCC
Confidence 89999853
No 29
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=98.73 E-value=1.2e-07 Score=87.75 Aligned_cols=136 Identities=19% Similarity=0.243 Sum_probs=83.9
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCCccC
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQE 144 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~~ 144 (341)
++-+++||++|+|+|-+.|.| ...+|.+ +.|+-+....|+++|+.|+++||+|||-.=-+- ++....| |.+.
T Consensus 27 ~~~l~k~ka~G~n~v~~yv~W-~~he~~~-g~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi---~aE~~~g---G~P~ 98 (319)
T PF01301_consen 27 RDRLQKMKAAGLNTVSTYVPW-NLHEPEE-GQFDFTGNRDLDRFLDLAQENGLYVILRPGPYI---CAEWDNG---GLPA 98 (319)
T ss_dssp HHHHHHHHHTT-SEEEEE--H-HHHSSBT-TB---SGGG-HHHHHHHHHHTT-EEEEEEES------TTBGGG---G--G
T ss_pred HHHHHHHHhCCcceEEEeccc-cccCCCC-CcccccchhhHHHHHHHHHHcCcEEEeccccee---cccccch---hhhh
Confidence 899999999999999999987 4666665 467766778899999999999999998643221 1111111 2333
Q ss_pred Cc------------hhHHHHHHHHHHHHHHHhCC-----CCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCc
Q 019395 145 WG------------DSNVADTVAVIDFLAARYAN-----RPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTA 207 (341)
Q Consensus 145 w~------------~~~~~~~~~~~~~la~~y~~-----~~~v~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~ 207 (341)
|. +...+...++++.|.+..+. --.|++.++=||... ...-+.+++.+.++.|+.....
T Consensus 99 Wl~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEyg~----~~~~~~Y~~~l~~~~~~~g~~~ 174 (319)
T PF01301_consen 99 WLLRKPDIRLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEYGS----YGTDRAYMEALKDAYRDWGIDP 174 (319)
T ss_dssp GGGGSTTS-SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSGGC----TSS-HHHHHHHHHHHHHTT-SS
T ss_pred hhhccccccccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhhCC----CcccHhHHHHHHHHHHHhhCcc
Confidence 42 34455555666665554332 235888999999873 2234677778888888888875
Q ss_pred eEEEe
Q 019395 208 YVIMS 212 (341)
Q Consensus 208 ~v~~~ 212 (341)
++...
T Consensus 175 ~~~~t 179 (319)
T PF01301_consen 175 VLLYT 179 (319)
T ss_dssp SBEEE
T ss_pred ceeec
Confidence 55554
No 30
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=98.52 E-value=7.1e-06 Score=68.58 Aligned_cols=139 Identities=22% Similarity=0.274 Sum_probs=96.6
Q ss_pred HHHhhccCHHHHHHHHHCCCCEEEcCcc-ccc-ccCCCCC--CCcccchHHHHHHHHHHHHHcCCeEEEecCCCCCCCCC
Q 019395 57 DHWDSYITDEDFKFLSSNGINAVRIPVG-WWI-ANDPTPP--KPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNG 132 (341)
Q Consensus 57 ~~~~~~~~e~d~~~i~~~G~N~VRlpi~-~~~-~~~~~~~--~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~ 132 (341)
..| +++|+.|++.|+++|=|-.. +.. ...|... ..+....-+-|+.+++.|.++||+|+|.|...+....
T Consensus 20 ~~W-----~~~~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~~~~w~- 93 (166)
T PF14488_consen 20 AQW-----REEFRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFDPDYWD- 93 (166)
T ss_pred HHH-----HHHHHHHHHcCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCCchhhh-
Confidence 567 99999999999999966421 110 0011110 1122235678999999999999999999987642211
Q ss_pred CCCCCCCCCccCCchhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCceEEEe
Q 019395 133 NEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMS 212 (341)
Q Consensus 133 ~~~~g~~~~~~~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~v~~~ 212 (341)
. ....| ..+.-..+.+.+.++|+.++.+.||=|-.|+... + ..-....+.+.+.++++.|+.+|+|+
T Consensus 94 ---~----~~~~~---~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~~~--~-~~~~~~~~~l~~~lk~~s~~~Pv~IS 160 (166)
T PF14488_consen 94 ---Q----GDLDW---EAERNKQVADELWQRYGHHPSFYGWYIPYEIDDY--N-WNAPERFALLGKYLKQISPGKPVMIS 160 (166)
T ss_pred ---c----cCHHH---HHHHHHHHHHHHHHHHcCCCCCceEEEecccCCc--c-cchHHHHHHHHHHHHHhCCCCCeEEe
Confidence 0 11112 3334456888999999999999999999999852 2 33466677788888888899999988
Q ss_pred CC
Q 019395 213 NR 214 (341)
Q Consensus 213 ~~ 214 (341)
+-
T Consensus 161 pf 162 (166)
T PF14488_consen 161 PF 162 (166)
T ss_pred cC
Confidence 53
No 31
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=98.41 E-value=1.4e-05 Score=74.20 Aligned_cols=226 Identities=17% Similarity=0.246 Sum_probs=130.9
Q ss_pred HHHHHHHCCCCEEEcC--cccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEE---EecCC-CCCCCCCCCCCCCCC
Q 019395 67 DFKFLSSNGINAVRIP--VGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVI---VDLHA-APGSQNGNEHSATRD 140 (341)
Q Consensus 67 d~~~i~~~G~N~VRlp--i~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vi---ldlh~-~~g~~~~~~~~g~~~ 140 (341)
....+-..-||.|=.. +.| ....|.++ .+ .++..|+++++|+++||.|- |=.|. .|.... .
T Consensus 26 ~~~~~~~~~Fn~~t~eN~~Kw-~~~e~~~g-~~---~~~~~D~~~~~a~~~g~~vrGH~LvW~~~~P~w~~-----~--- 92 (320)
T PF00331_consen 26 RYRELFAKHFNSVTPENEMKW-GSIEPEPG-RF---NFESADAILDWARENGIKVRGHTLVWHSQTPDWVF-----N--- 92 (320)
T ss_dssp HHHHHHHHH-SEEEESSTTSH-HHHESBTT-BE---E-HHHHHHHHHHHHTT-EEEEEEEEESSSS-HHHH-----T---
T ss_pred HHHHHHHHhCCeeeeccccch-hhhcCCCC-cc---CccchhHHHHHHHhcCcceeeeeEEEcccccceee-----e---
Confidence 4555555678888764 444 34444443 34 37899999999999999865 33343 121100 0
Q ss_pred CccCCc-h---hHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCC-----ChHHHH-----HHHHHHHHHHHhcCCC
Q 019395 141 GFQEWG-D---SNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGV-----ALDTLK-----SYYKAGYDAVRKYTST 206 (341)
Q Consensus 141 ~~~~w~-~---~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~-----~~~~~~-----~~~~~~~~aIR~~~p~ 206 (341)
...+. . ...+...++++.+++||++...|..||++|||..... ....|. .|...+++..|+.+|+
T Consensus 93 -~~~~~~~~~~~~~~~l~~~I~~v~~~y~~~g~i~~WDVvNE~i~~~~~~~~~r~~~~~~~lG~~yi~~aF~~A~~~~P~ 171 (320)
T PF00331_consen 93 -LANGSPDEKEELRARLENHIKTVVTRYKDKGRIYAWDVVNEAIDDDGNPGGLRDSPWYDALGPDYIADAFRAAREADPN 171 (320)
T ss_dssp -STTSSBHHHHHHHHHHHHHHHHHHHHTTTTTTESEEEEEES-B-TTSSSSSBCTSHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred -ccCCCcccHHHHHHHHHHHHHHHHhHhccccceEEEEEeeecccCCCccccccCChhhhcccHhHHHHHHHHHHHhCCC
Confidence 00112 1 2567777999999999998778999999999986321 011222 4889999999999999
Q ss_pred ceEEEeCCCCCCC--hhhhhh-------ccCCCCcEEEEeeecCCCCccccCccchhhhHHHHhhhhhhhhhhhccCCCc
Q 019395 207 AYVIMSNRLGPAD--HKELLS-------FASGLSRVVIDVHYYNLFSNNFNGLNVQQNIDYVNNQRASDLGAVTTSNGPL 277 (341)
Q Consensus 207 ~~v~~~~~~~~~~--~~~~~~-------~~~~~~~~v~~~H~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 277 (341)
..+++.+-.--.. ...+.+ ...+-+-+-++.|.-.... .+.+.. .+..++.. |.|
T Consensus 172 a~L~~NDy~~~~~~k~~~~~~lv~~l~~~gvpIdgIG~Q~H~~~~~~-----------~~~i~~----~l~~~~~~-Gl~ 235 (320)
T PF00331_consen 172 AKLFYNDYNIESPAKRDAYLNLVKDLKARGVPIDGIGLQSHFDAGYP-----------PEQIWN----ALDRFASL-GLP 235 (320)
T ss_dssp SEEEEEESSTTSTHHHHHHHHHHHHHHHTTHCS-EEEEEEEEETTSS-----------HHHHHH----HHHHHHTT-TSE
T ss_pred cEEEeccccccchHHHHHHHHHHHHHHhCCCccceechhhccCCCCC-----------HHHHHH----HHHHHHHc-CCc
Confidence 9999975221111 111221 1234567889999764321 222222 22333333 678
Q ss_pred eEEEeecCCCCCCCC---CHHHHHHHHHHHHHHHcc----CCCcEEEecccc
Q 019395 278 TFVGEWTCEWNVKDA---SKQDYQRFANAQLDVYGR----ATFGWAYWAHKC 322 (341)
Q Consensus 278 v~vGE~g~~~~~~~~---~~~~~~~~~~~~~~~~~~----~~~Gw~~W~~k~ 322 (341)
|.|+|+-........ ..+...+++++.+.++-+ ..-|.++|.+..
T Consensus 236 i~ITElDv~~~~~~~~~~~~~~qA~~~~~~~~~~~~~~~~~v~git~Wg~~D 287 (320)
T PF00331_consen 236 IHITELDVRDDDNPPDAEEEEAQAEYYRDFLTACFSHPPAAVEGITWWGFTD 287 (320)
T ss_dssp EEEEEEEEESSSTTSCHHHHHHHHHHHHHHHHHHHHTTHCTEEEEEESSSBT
T ss_pred eEEEeeeecCCCCCcchHHHHHHHHHHHHHHHHHHhCCccCCCEEEEECCCC
Confidence 999999865432221 133344555555555433 357899998864
No 32
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.40 E-value=2.9e-06 Score=84.65 Aligned_cols=138 Identities=20% Similarity=0.235 Sum_probs=90.3
Q ss_pred cCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHH-HHHHHHcCCeEEEec-C--CCCCCC-CCC----
Q 019395 63 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNA-FDWAEKYGVKVIVDL-H--AAPGSQ-NGN---- 133 (341)
Q Consensus 63 ~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~-i~~a~~~gi~vildl-h--~~~g~~-~~~---- 133 (341)
+-++|++.||++|+|+||+...-|...+|..+ .|+ +..+|.. ++.|.+.||+|||-- - +.|... +..
T Consensus 31 ~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG-~fd---f~~~D~~~l~~a~~~Gl~vil~t~P~g~~P~Wl~~~~PeiL 106 (673)
T COG1874 31 TWMDDLRKMKALGLNTVRIGYFAWNLHEPEEG-KFD---FTWLDEIFLERAYKAGLYVILRTGPTGAPPAWLAKKYPEIL 106 (673)
T ss_pred HHHHHHHHHHHhCCCeeEeeeEEeeccCcccc-ccC---cccchHHHHHHHHhcCceEEEecCCCCCCchHHhcCChhhe
Confidence 33999999999999999994434467777654 565 3355555 999999999999965 2 111100 000
Q ss_pred --CCCCCCCCccCC------chhHHHHHHHHHHHHHHH-hCCCCceeEEEeecCCCC----CCCChHHHHHHHHHHHHHH
Q 019395 134 --EHSATRDGFQEW------GDSNVADTVAVIDFLAAR-YANRPSLAAIELINEPLA----PGVALDTLKSYYKAGYDAV 200 (341)
Q Consensus 134 --~~~g~~~~~~~w------~~~~~~~~~~~~~~la~~-y~~~~~v~~~el~NEP~~----~~~~~~~~~~~~~~~~~aI 200 (341)
+..+.......| ++.+.+....+.+.+++| |++.++|++|.+-||=.. .......++.|.++-+..|
T Consensus 107 ~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dneY~~~~~~~~~~~~~f~~wLk~~yg~l 186 (673)
T COG1874 107 AVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQNDNEYGGHPCYCDYCQAAFRLWLKKGYGSL 186 (673)
T ss_pred EecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEccCccCCccccccccHHHHHHHHHhCcchH
Confidence 001111112222 255677777888999999 999999999999999443 1234456666777766655
Q ss_pred HhcC
Q 019395 201 RKYT 204 (341)
Q Consensus 201 R~~~ 204 (341)
...+
T Consensus 187 ~~ln 190 (673)
T COG1874 187 DNLN 190 (673)
T ss_pred Hhhh
Confidence 5444
No 33
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=98.13 E-value=8.6e-05 Score=66.04 Aligned_cols=130 Identities=18% Similarity=0.250 Sum_probs=79.9
Q ss_pred EEeecCCCCC---CCChHHHHHHHHHHHHHHHhcCCCceEEEeCC-CCCC------C-hhhhhhccC-CCCcEEEEeeec
Q 019395 173 IELINEPLAP---GVALDTLKSYYKAGYDAVRKYTSTAYVIMSNR-LGPA------D-HKELLSFAS-GLSRVVIDVHYY 240 (341)
Q Consensus 173 ~el~NEP~~~---~~~~~~~~~~~~~~~~aIR~~~p~~~v~~~~~-~~~~------~-~~~~~~~~~-~~~~~v~~~H~Y 240 (341)
+..+|||... ..++++..+.+.+.++.+|. +...|+-... +... . +..|+.... ...-.++++|.|
T Consensus 69 ll~fNEPD~~~qsn~~p~~aa~~w~~~~~~~~~--~~~~l~sPa~~~~~~~~~~g~~Wl~~F~~~~~~~~~~D~iavH~Y 146 (239)
T PF11790_consen 69 LLGFNEPDLPGQSNMSPEEAAALWKQYMNPLRS--PGVKLGSPAVAFTNGGTPGGLDWLSQFLSACARGCRVDFIAVHWY 146 (239)
T ss_pred eeeecCCCCCCCCCCCHHHHHHHHHHHHhHhhc--CCcEEECCeecccCCCCCCccHHHHHHHHhcccCCCccEEEEecC
Confidence 4478999974 36777888888888888884 5444433211 1211 1 244555443 456789999999
Q ss_pred CCCCccccCccchhhhHHHHhhhhhhhhhhhccCCCceEEEeecCCCCCCCCCHHHHHHHHHHHHHHHcc-CCCcEEEec
Q 019395 241 NLFSNNFNGLNVQQNIDYVNNQRASDLGAVTTSNGPLTFVGEWTCEWNVKDASKQDYQRFANAQLDVYGR-ATFGWAYWA 319 (341)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~vGE~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Gw~~W~ 319 (341)
.. +.....+. +..+.+..++||+|+|||+.......+.+...+|++..+..+++ ..+.-++|-
T Consensus 147 ~~--------~~~~~~~~--------i~~~~~~~~kPIWITEf~~~~~~~~~~~~~~~~fl~~~~~~ld~~~~VeryawF 210 (239)
T PF11790_consen 147 GG--------DADDFKDY--------IDDLHNRYGKPIWITEFGCWNGGSQGSDEQQASFLRQALPWLDSQPYVERYAWF 210 (239)
T ss_pred Cc--------CHHHHHHH--------HHHHHHHhCCCEEEEeecccCCCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEec
Confidence 21 11111222 22222334578999999986544556778889999999888875 344444554
Q ss_pred c
Q 019395 320 H 320 (341)
Q Consensus 320 ~ 320 (341)
-
T Consensus 211 ~ 211 (239)
T PF11790_consen 211 G 211 (239)
T ss_pred c
Confidence 3
No 34
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=98.09 E-value=0.00058 Score=61.77 Aligned_cols=161 Identities=16% Similarity=0.176 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHcCCeEEEecCCCC-CCCCCCCCCCCCCCccCCc-hhHHHHHHHHHHHHHHHhCCCCceeEEEeecCC
Q 019395 102 SKVLDNAFDWAEKYGVKVIVDLHAAP-GSQNGNEHSATRDGFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINEP 179 (341)
Q Consensus 102 l~~ld~~i~~a~~~gi~vildlh~~~-g~~~~~~~~g~~~~~~~w~-~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP 179 (341)
++.-|.+++.|++|||.+ --|..- .+|...+..+. .+. +...+...+.++.+++||++. +..||++|||
T Consensus 81 Fe~AD~ia~FAr~h~m~l--hGHtLvW~~q~P~W~~~~-----e~~~~~~~~~~e~hI~tV~~rYkg~--~~sWDVVNE~ 151 (345)
T COG3693 81 FEAADAIANFARKHNMPL--HGHTLVWHSQVPDWLFGD-----ELSKEALAKMVEEHIKTVVGRYKGS--VASWDVVNEA 151 (345)
T ss_pred ccchHHHHHHHHHcCCee--ccceeeecccCCchhhcc-----ccChHHHHHHHHHHHHHHHHhccCc--eeEEEecccc
Confidence 788899999999999862 223221 12222222221 022 456777889999999999996 7889999999
Q ss_pred CCCC--CChHHHH------HHHHHHHHHHHhcCCCceEEEeCC-CCCCCh---------hhhhhccCCCCcEEEEeeecC
Q 019395 180 LAPG--VALDTLK------SYYKAGYDAVRKYTSTAYVIMSNR-LGPADH---------KELLSFASGLSRVVIDVHYYN 241 (341)
Q Consensus 180 ~~~~--~~~~~~~------~~~~~~~~aIR~~~p~~~v~~~~~-~~~~~~---------~~~~~~~~~~~~~v~~~H~Y~ 241 (341)
.... ...+.|. .+++.++..-|+.+|+..+++-+- ...... ..+.....+-+.+-++.|+=.
T Consensus 152 vdd~g~~R~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~NDY~ie~~~~kr~~~~nlI~~LkekG~pIDgiG~QsH~~~ 231 (345)
T COG3693 152 VDDQGSLRRSAWYDGGTGPDYIKLAFHIAREADPDAKLVINDYSIEGNPAKRNYVLNLIEELKEKGAPIDGIGIQSHFSG 231 (345)
T ss_pred cCCCchhhhhhhhccCCccHHHHHHHHHHHhhCCCceEEeecccccCChHHHHHHHHHHHHHHHCCCCccceeeeeeecC
Confidence 8621 1112222 477888999999999998888752 111111 222222345677889999332
Q ss_pred CCCccccCccchhhhHHHHhhhhhhhhhhhccCCCceEEEeecCC
Q 019395 242 LFSNNFNGLNVQQNIDYVNNQRASDLGAVTTSNGPLTFVGEWTCE 286 (341)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~vGE~g~~ 286 (341)
-+ ... +.... .+...++. |.+++|+|+=..
T Consensus 232 ~~------~~~----~~~~~----a~~~~~k~-Gl~i~VTELD~~ 261 (345)
T COG3693 232 DG------PSI----EKMRA----ALLKFSKL-GLPIYVTELDMS 261 (345)
T ss_pred CC------CCH----HHHHH----HHHHHhhc-CCCceEEEeeee
Confidence 11 111 11111 22334455 777999998654
No 35
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=98.08 E-value=0.00068 Score=63.35 Aligned_cols=208 Identities=15% Similarity=0.189 Sum_probs=96.4
Q ss_pred HHHHHHHcCCeEEEecCCCCCC---CCCCCCCCCCCCccCCchhHHHHHHHHHHHHHHHhCCCC-ceeEEEeecCCCCC-
Q 019395 108 AFDWAEKYGVKVIVDLHAAPGS---QNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRP-SLAAIELINEPLAP- 182 (341)
Q Consensus 108 ~i~~a~~~gi~vildlh~~~g~---~~~~~~~g~~~~~~~w~~~~~~~~~~~~~~la~~y~~~~-~v~~~el~NEP~~~- 182 (341)
+++.|+++|+..++-+-..|.. .|+...++. .+...-.+...+.|++++..++++|+..- .+--++++|||...
T Consensus 109 fL~~Ak~rGV~~f~aFSNSPP~~MT~NG~~~g~~-~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~~W 187 (384)
T PF14587_consen 109 FLKAAKERGVNIFEAFSNSPPWWMTKNGSASGGD-DGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQWNW 187 (384)
T ss_dssp HHHHHHHTT---EEEE-SSS-GGGSSSSSSB-S--SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS-G
T ss_pred HHHHHHHcCCCeEEEeecCCCHHHhcCCCCCCCC-ccccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCCCCC
Confidence 7799999999988765555432 233322221 11111226788999999999999995543 56678899999962
Q ss_pred --------CCChHHHHHHHHHHHHHHHhcCCCceEEEeCC--C----CC--C------Chhhhhhc-----cCCCCcE--
Q 019395 183 --------GVALDTLKSYYKAGYDAVRKYTSTAYVIMSNR--L----GP--A------DHKELLSF-----ASGLSRV-- 233 (341)
Q Consensus 183 --------~~~~~~~~~~~~~~~~aIR~~~p~~~v~~~~~--~----~~--~------~~~~~~~~-----~~~~~~~-- 233 (341)
..+.++..++++.+..++++.+.+..|++.+. + .. . -...|+.. ..+..+|
T Consensus 188 ~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~~~Ea~~~~~l~~~~~~~~~r~~~i~~ff~~~s~~yi~~l~~v~~ 267 (384)
T PF14587_consen 188 AGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKISACEAGDWEYLYKTDKNDWGRGNQIEAFFNPDSSTYIGDLPNVPN 267 (384)
T ss_dssp G--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEEEESSGGGGS---S-TTS---HHHHHHSTTSTT--TT-TTEEE
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEecchhhHHHHhhccCCchhhhhhHHhhcCCCchhhhhccccchh
Confidence 13456788999999999999999888888631 1 10 0 01223221 1122333
Q ss_pred EEEeeecCCCCccccCccchhhhHHHHhhhhhhhhhhhccC--CCceEEEeecCCCCCC----CCC--HH---HHHHHHH
Q 019395 234 VIDVHYYNLFSNNFNGLNVQQNIDYVNNQRASDLGAVTTSN--GPLTFVGEWTCEWNVK----DAS--KQ---DYQRFAN 302 (341)
Q Consensus 234 v~~~H~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~pv~vGE~g~~~~~~----~~~--~~---~~~~~~~ 302 (341)
+++-|.|.... +...+..++.. ++...++. +..++.+||+..-+.. +.. .+ ...-|+.
T Consensus 268 ~i~~HsYwt~~-------~~~~l~~~R~~----~~~~~~~~~~~~~~wqtE~~il~~~~~~~~~~g~~~~~~m~~aLy~a 336 (384)
T PF14587_consen 268 IISGHSYWTDS-------PWDDLRDIRKQ----LADKLDKYSPGLKYWQTEYCILGDNYEIIEGGGYDRDLGMDTALYVA 336 (384)
T ss_dssp EEEE--TT-SS-------SHHHHHHHHHH----HHHHHHTTSS--EEEE----S----TTT-SSS-HHHHHHH--HHHHH
T ss_pred heeecccccCC-------CHHHHHHHHHH----HHHHHHhhCcCCceeeeeeeeccCCcccccCCCcccchhHHHHHHHH
Confidence 69999995321 12222233322 22223333 5569999998643211 111 11 1244555
Q ss_pred HHHH--HHccCCCcEEEeccccCCCCCChH
Q 019395 303 AQLD--VYGRATFGWAYWAHKCEANHWSLK 330 (341)
Q Consensus 303 ~~~~--~~~~~~~Gw~~W~~k~~~~~W~~~ 330 (341)
.++. .=..+..+|-+|+-- ..|+|+
T Consensus 337 rviH~DL~~anassW~wW~a~---~~~~yk 363 (384)
T PF14587_consen 337 RVIHNDLTYANASSWQWWTAI---SPYDYK 363 (384)
T ss_dssp HHHHHHHHTS--SEEEEEESE---ESS--S
T ss_pred HHHHhhhhhcccchhHHHHHh---cccccc
Confidence 5542 222366789999753 345554
No 36
>PLN03059 beta-galactosidase; Provisional
Probab=98.03 E-value=0.00013 Score=74.49 Aligned_cols=144 Identities=15% Similarity=0.146 Sum_probs=97.7
Q ss_pred HHHhhccCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCC
Q 019395 57 DHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHS 136 (341)
Q Consensus 57 ~~~~~~~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~ 136 (341)
+.| ++-|+++|++|+|+|=.=|.| .+.+|.+ +.|+=+....|.++|+.|++.||+|||-.--+ ..+.+..
T Consensus 59 ~~W-----~d~L~k~Ka~GlNtV~tYV~W-n~HEp~~-G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPY---IcAEw~~ 128 (840)
T PLN03059 59 EMW-----PDLIQKAKDGGLDVIQTYVFW-NGHEPSP-GNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPY---ICAEWNF 128 (840)
T ss_pred HHH-----HHHHHHHHHcCCCeEEEEecc-cccCCCC-CeeeccchHHHHHHHHHHHHcCCEEEecCCcc---eeeeecC
Confidence 667 899999999999999998877 5667765 46776778899999999999999999963211 1111211
Q ss_pred CCCCCccCCc------------hhHHHHHHHHHHHHHHHhC-------CCCceeEEEeecCCCCCC-CChHHHHHHHHHH
Q 019395 137 ATRDGFQEWG------------DSNVADTVAVIDFLAARYA-------NRPSLAAIELINEPLAPG-VALDTLKSYYKAG 196 (341)
Q Consensus 137 g~~~~~~~w~------------~~~~~~~~~~~~~la~~y~-------~~~~v~~~el~NEP~~~~-~~~~~~~~~~~~~ 196 (341)
| |.|.|. +.+.+...++++.|+.+.+ +--.|++.++=||=..-. .....=+.|++.+
T Consensus 129 G---GlP~WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEYGs~~~~~~~~d~~Yl~~l 205 (840)
T PLN03059 129 G---GFPVWLKYVPGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEYGPVEWEIGAPGKAYTKWA 205 (840)
T ss_pred C---CCchhhhcCCCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEecccccceecccCcchHHHHHHH
Confidence 2 223331 3455666677777776654 223578899999954210 0001226677777
Q ss_pred HHHHHhcCCCceEEEeC
Q 019395 197 YDAVRKYTSTAYVIMSN 213 (341)
Q Consensus 197 ~~aIR~~~p~~~v~~~~ 213 (341)
.++.++.+-+.+++..+
T Consensus 206 ~~~~~~~Gi~VPl~t~d 222 (840)
T PLN03059 206 ADMAVKLGTGVPWVMCK 222 (840)
T ss_pred HHHHHHcCCCcceEECC
Confidence 77888888888877764
No 37
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=97.96 E-value=7.6e-05 Score=76.67 Aligned_cols=109 Identities=20% Similarity=0.215 Sum_probs=78.0
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCCccC
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQE 144 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~~ 144 (341)
++|++.||++|+|+||.+ ++ | +++ +..++|.++||.||-+....- +... ..
T Consensus 324 ~~dl~lmk~~n~N~vRts-Hy-----P-----~~~-------~~ydLcDelGllV~~Ea~~~~-------~~~~--~~-- 374 (808)
T COG3250 324 ERDLKLMKEANMNSVRTS-HY-----P-----NSE-------EFYDLCDELGLLVIDEAMIET-------HGMP--DD-- 374 (808)
T ss_pred HHHHHHHHHcCCCEEEec-CC-----C-----CCH-------HHHHHHHHhCcEEEEecchhh-------cCCC--CC--
Confidence 889999999999999986 22 2 222 677999999999999875431 0000 11
Q ss_pred CchhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCceEEEe
Q 019395 145 WGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMS 212 (341)
Q Consensus 145 w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~v~~~ 212 (341)
+...+.+..-++++.+|-|++|.|+.|.+.||+..+.. ...++..+++.+|..++..+
T Consensus 375 --~~~~k~~~~~i~~mver~knHPSIiiWs~gNE~~~g~~--------~~~~~~~~k~~d~~r~~~~~ 432 (808)
T COG3250 375 --PEWRKEVSEEVRRMVERDRNHPSIIIWSLGNESGHGSN--------HWALYRWFKASDPTRPVQYE 432 (808)
T ss_pred --cchhHHHHHHHHHHHHhccCCCcEEEEeccccccCccc--------cHHHHHHHhhcCCccceecc
Confidence 24456777788899999999999999999999875221 12345566666776666655
No 38
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=97.68 E-value=0.0074 Score=53.22 Aligned_cols=209 Identities=13% Similarity=0.134 Sum_probs=127.8
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCCccC
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQE 144 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~~ 144 (341)
+.||+.|+..+. .||+ | . . --..|..+...+.+.|++|+|.+.-.+..
T Consensus 66 ~sDLe~l~~~t~-~IR~---Y---~--s--------DCn~le~v~pAa~~~g~kv~lGiw~tdd~--------------- 113 (305)
T COG5309 66 ASDLELLASYTH-SIRT---Y---G--S--------DCNTLENVLPAAEASGFKVFLGIWPTDDI--------------- 113 (305)
T ss_pred HhHHHHhccCCc-eEEE---e---e--c--------cchhhhhhHHHHHhcCceEEEEEeeccch---------------
Confidence 789999999987 8997 2 1 0 12446788899999999999987754311
Q ss_pred CchhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCC-CCChHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCChhhh
Q 019395 145 WGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP-GVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRLGPADHKEL 223 (341)
Q Consensus 145 w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~-~~~~~~~~~~~~~~~~aIR~~~p~~~v~~~~~~~~~~~~~~ 223 (341)
.+...+-...-..-+.+-+.|.++-+-||-... ..+.+++-.+..++-.++.+.+-+.+|.-.+.|.. +.+-
T Consensus 114 -----~~~~~~til~ay~~~~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~agy~gpV~T~dsw~~--~~~n 186 (305)
T COG5309 114 -----HDAVEKTILSAYLPYNGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGYDGPVTTVDSWNV--VINN 186 (305)
T ss_pred -----hhhHHHHHHHHHhccCCCCceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCCceeeccccee--eeCC
Confidence 112221222222334566788888899997653 46788999999999999998888777766555532 1111
Q ss_pred hhccCCCCcEEEEeeecCCCCccccCccchhhhHHHHhhhhhhhhhhhccCCCceEEEeecCCCCCC-----CCCHHHHH
Q 019395 224 LSFASGLSRVVIDVHYYNLFSNNFNGLNVQQNIDYVNNQRASDLGAVTTSNGPLTFVGEWTCEWNVK-----DASKQDYQ 298 (341)
Q Consensus 224 ~~~~~~~~~~v~~~H~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~vGE~g~~~~~~-----~~~~~~~~ 298 (341)
..+....+.++.-.|.| |+. ++..+..........+.+.. ..-..++++|||-|=+.++. -.+.+...
T Consensus 187 p~l~~~SDfia~N~~aY--wd~----~~~a~~~~~f~~~q~e~vqs-a~g~~k~~~v~EtGWPS~G~~~G~a~pS~anq~ 259 (305)
T COG5309 187 PELCQASDFIAANAHAY--WDG----QTVANAAGTFLLEQLERVQS-ACGTKKTVWVTETGWPSDGRTYGSAVPSVANQK 259 (305)
T ss_pred hHHhhhhhhhhcccchh--ccc----cchhhhhhHHHHHHHHHHHH-hcCCCccEEEeeccCCCCCCccCCcCCChhHHH
Confidence 11223346788889999 332 11111111111011111111 11122789999988544321 23456778
Q ss_pred HHHHHHHHHHccCCCcEEEec
Q 019395 299 RFANAQLDVYGRATFGWAYWA 319 (341)
Q Consensus 299 ~~~~~~~~~~~~~~~Gw~~W~ 319 (341)
.++++.+.+++..+...|+-+
T Consensus 260 ~~~~~i~~~~~~~G~d~fvfe 280 (305)
T COG5309 260 IAVQEILNALRSCGYDVFVFE 280 (305)
T ss_pred HHHHHHHhhhhccCccEEEee
Confidence 888888888877666766553
No 39
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=97.54 E-value=0.0065 Score=59.61 Aligned_cols=231 Identities=19% Similarity=0.190 Sum_probs=118.4
Q ss_pred HHCCCCEEEcCcccccccC------CCCCC----Ccc--cchHHHHHHHHHHHHH--cCCeEEEecCCCCCCC--CCCCC
Q 019395 72 SSNGINAVRIPVGWWIAND------PTPPK----PFV--GGSSKVLDNAFDWAEK--YGVKVIVDLHAAPGSQ--NGNEH 135 (341)
Q Consensus 72 ~~~G~N~VRlpi~~~~~~~------~~~~~----~~~--~~~l~~ld~~i~~a~~--~gi~vildlh~~~g~~--~~~~~ 135 (341)
..+|++.+|+||+=-.+.. +.+.+ .|+ .+..+.+-.+|+.|.+ .+|+++-.....|+.. |+.-.
T Consensus 110 ~G~g~s~~R~pIgssDfs~~~Yty~d~~~D~~l~~Fs~~~~d~~~~ip~ik~a~~~~~~lki~aSpWSpP~WMKtn~~~~ 189 (496)
T PF02055_consen 110 DGIGYSLLRVPIGSSDFSTRPYTYDDVPGDFNLSNFSIAREDKKYKIPLIKEALAINPNLKIFASPWSPPAWMKTNGSMN 189 (496)
T ss_dssp TTT---EEEEEES--SSSSS---ST-STTHTTTTT---HHHHHTTHHHHHHHHHHHHTT-EEEEEES---GGGBTTSSSC
T ss_pred CCceEEEEEeeccCcCCcCCcccccCCCCCCccccCCccccchhhHHHHHHHHHHhCCCcEEEEecCCCCHHHccCCcCc
Confidence 4589999999996322211 11110 111 0011111234444433 3599999999988753 22111
Q ss_pred -CCCCCCccCCchhHHHHHHHHHHHHHHHhCCCC-ceeEEEeecCCCCC----------CCChHHHHHHHHH-HHHHHHh
Q 019395 136 -SATRDGFQEWGDSNVADTVAVIDFLAARYANRP-SLAAIELINEPLAP----------GVALDTLKSYYKA-GYDAVRK 202 (341)
Q Consensus 136 -~g~~~~~~~w~~~~~~~~~~~~~~la~~y~~~~-~v~~~el~NEP~~~----------~~~~~~~~~~~~~-~~~aIR~ 202 (341)
.|...+.. .+++.+.+++++....+.|+..- .|+++-+-|||... ..+.++.+.|... +-.++++
T Consensus 190 g~g~l~g~~--~~~y~~~yA~Y~vkfi~aY~~~GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~ 267 (496)
T PF02055_consen 190 GGGSLKGSL--GDEYYQAYADYFVKFIQAYKKEGIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRK 267 (496)
T ss_dssp SS-BBSCGT--TSHHHHHHHHHHHHHHHHHHCTT--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHT
T ss_pred CCCccCCCC--CchhHHHHHHHHHHHHHHHHHCCCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHh
Confidence 12111111 03566777888888888887654 68999999999841 1346678888876 7779999
Q ss_pred cCC--CceEEEeCC-CCC-CCh-hhhhhccCC-CCcEEEEeeecCCCCccccCccchhhhHHHHhhhhhhhhhhhccCCC
Q 019395 203 YTS--TAYVIMSNR-LGP-ADH-KELLSFASG-LSRVVIDVHYYNLFSNNFNGLNVQQNIDYVNNQRASDLGAVTTSNGP 276 (341)
Q Consensus 203 ~~p--~~~v~~~~~-~~~-~~~-~~~~~~~~~-~~~~v~~~H~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (341)
.++ +..|++-+. +.. ..+ ...+..+.. .--..+.+|.|..-. ....++.+.. +...+
T Consensus 268 ~~~g~d~kI~~~D~n~~~~~~~~~~il~d~~A~~yv~GiA~HwY~g~~-------~~~~l~~~h~----------~~P~k 330 (496)
T PF02055_consen 268 AGLGKDVKILIYDHNRDNLPDYADTILNDPEAAKYVDGIAFHWYGGDP-------SPQALDQVHN----------KFPDK 330 (496)
T ss_dssp STT-TTSEEEEEEEEGGGTTHHHHHHHTSHHHHTTEEEEEEEETTCS--------HCHHHHHHHH----------HSTTS
T ss_pred cCCCCceEEEEEecCCcccchhhhhhhcChhhHhheeEEEEECCCCCc-------hhhHHHHHHH----------HCCCc
Confidence 877 666666432 111 111 222221111 123679999995410 0122333222 22355
Q ss_pred ceEEEeecCCCCCCC-----CCHHHHHHHHHHHHHHHccCCCcEEEeccc
Q 019395 277 LTFVGEWTCEWNVKD-----ASKQDYQRFANAQLDVYGRATFGWAYWAHK 321 (341)
Q Consensus 277 pv~vGE~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Gw~~W~~k 321 (341)
.++.+|-++...... ..-+.-.+|....+..+.....||..|..-
T Consensus 331 ~l~~TE~~~g~~~~~~~~~~g~w~~~~~y~~~ii~~lnn~~~gw~~WNl~ 380 (496)
T PF02055_consen 331 FLLFTEACCGSWNWDTSVDLGSWDRAERYAHDIIGDLNNWVSGWIDWNLA 380 (496)
T ss_dssp EEEEEEEESS-STTS-SS-TTHHHHHHHHHHHHHHHHHTTEEEEEEEESE
T ss_pred EEEeeccccCCCCcccccccccHHHHHHHHHHHHHHHHhhceeeeeeeee
Confidence 689999865432111 112333467777777777777899999864
No 40
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=97.30 E-value=0.01 Score=60.06 Aligned_cols=147 Identities=16% Similarity=0.154 Sum_probs=83.7
Q ss_pred HHHHHHHHHCCCCEEEc-Cccccccc-----CCCCCCCcc--cchHHHHHHHHHHHHHcCCeEEEec---CCCCCCC--C
Q 019395 65 DEDFKFLSSNGINAVRI-PVGWWIAN-----DPTPPKPFV--GGSSKVLDNAFDWAEKYGVKVIVDL---HAAPGSQ--N 131 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRl-pi~~~~~~-----~~~~~~~~~--~~~l~~ld~~i~~a~~~gi~vildl---h~~~g~~--~ 131 (341)
++-++.|+++|+|+|=| ||...... ++......+ =+..+.|+++|+.|+++||+||||+ |..+... .
T Consensus 160 ~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~~~~~~ 239 (613)
T TIGR01515 160 DQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWVPGHFPKDDHGLA 239 (613)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecccCcCCccchhh
Confidence 44459999999999999 76421100 000000001 1347899999999999999999997 4332210 0
Q ss_pred CCC------CCC-CCCCccCCc--------hhHHHHHHHHHHHHHHHhCCCCceeEEEee---------cCCCC------
Q 019395 132 GNE------HSA-TRDGFQEWG--------DSNVADTVAVIDFLAARYANRPSLAAIELI---------NEPLA------ 181 (341)
Q Consensus 132 ~~~------~~g-~~~~~~~w~--------~~~~~~~~~~~~~la~~y~~~~~v~~~el~---------NEP~~------ 181 (341)
.++ +.. .......|. +..++..++.++..++.|+=+ .+- +|.+ +++..
T Consensus 240 ~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~iD-G~R-~D~v~~~~~~~~~~~~~~~~~~~~ 317 (613)
T TIGR01515 240 EFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYHID-GLR-VDAVASMLYLDYSRDEGEWSPNED 317 (613)
T ss_pred ccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCCc-EEE-EcCHHHhhhhcccccccccccccc
Confidence 000 000 000111232 567777888888888887421 111 2221 12210
Q ss_pred CCCChHHHHHHHHHHHHHHHhcCCCceEEEeC
Q 019395 182 PGVALDTLKSYYKAGYDAVRKYTSTAYVIMSN 213 (341)
Q Consensus 182 ~~~~~~~~~~~~~~~~~aIR~~~p~~~v~~~~ 213 (341)
.+.....-..|.+++.+.||+..|+.+++-+.
T Consensus 318 ~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~ 349 (613)
T TIGR01515 318 GGRENLEAVDFLRKLNQTVYEAFPGVVTIAEE 349 (613)
T ss_pred CCcCChHHHHHHHHHHHHHHHHCCCeEEEEEe
Confidence 01112345678899999999999998777763
No 41
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=97.15 E-value=0.054 Score=49.95 Aligned_cols=139 Identities=14% Similarity=0.137 Sum_probs=78.7
Q ss_pred HHHHHHHHHCCCCEEEcCcccccc---cC-CCCC-CCc--ccchHHHHHHHHHHHHHcCCeEEEecCCCCCC----CCC-
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIA---ND-PTPP-KPF--VGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGS----QNG- 132 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~---~~-~~~~-~~~--~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~----~~~- 132 (341)
++-++.|++.|+|+|=|.|--... .+ ..+. ... .......+.++++.++++|||+|-=+..+... .+.
T Consensus 16 ~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~FkD~~la~~~pe 95 (316)
T PF13200_consen 16 DKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVFKDPVLAEAHPE 95 (316)
T ss_pred HHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEecChHHhhhChh
Confidence 778899999999999997742100 00 0000 000 11234679999999999999999755433211 000
Q ss_pred --C-CCCCC---CCCccCCc----hhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCC-------------CCCCChHHH
Q 019395 133 --N-EHSAT---RDGFQEWG----DSNVADTVAVIDFLAARYANRPSLAAIELINEPL-------------APGVALDTL 189 (341)
Q Consensus 133 --~-~~~g~---~~~~~~w~----~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~-------------~~~~~~~~~ 189 (341)
. ...|. ......|. ++.++..+++.+++|+. +...|. ||=+==|. ......+.+
T Consensus 96 ~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~--GFdEIq-fDYIRFP~~~~~~~l~y~~~~~~~~r~~aI 172 (316)
T PF13200_consen 96 WAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKL--GFDEIQ-FDYIRFPDEGRLSGLDYSENDTEESRVDAI 172 (316)
T ss_pred hEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHc--CCCEEE-eeeeecCCCCcccccccCCCCCcchHHHHH
Confidence 0 00111 00123355 56777778888888872 322332 33222232 111134688
Q ss_pred HHHHHHHHHHHHhcCCC
Q 019395 190 KSYYKAGYDAVRKYTST 206 (341)
Q Consensus 190 ~~~~~~~~~aIR~~~p~ 206 (341)
..|.+.+.+.+++.+-.
T Consensus 173 ~~Fl~~a~~~l~~~~v~ 189 (316)
T PF13200_consen 173 TDFLAYAREELHPYGVP 189 (316)
T ss_pred HHHHHHHHHHHhHcCCC
Confidence 89999999999887654
No 42
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.10 E-value=0.012 Score=55.97 Aligned_cols=152 Identities=18% Similarity=0.274 Sum_probs=99.9
Q ss_pred HhhccCHHHHHHHHHCCCCEEEcCcc----ccccc---C------------C------------CCCCCcccc----hHH
Q 019395 59 WDSYITDEDFKFLSSNGINAVRIPVG----WWIAN---D------------P------------TPPKPFVGG----SSK 103 (341)
Q Consensus 59 ~~~~~~e~d~~~i~~~G~N~VRlpi~----~~~~~---~------------~------------~~~~~~~~~----~l~ 103 (341)
|..| |..+++|+=.|+|.+=-|.+ |.... . | .-++|+.+. .+-
T Consensus 77 w~qW--eR~iDWmALnGinl~la~~gQEaIWqkVf~~lgl~~eeldeyftgpAflAW~RMGNl~awgGpLs~aw~~~ql~ 154 (666)
T KOG2233|consen 77 WEQW--EREIDWMALNGINLVLAPLGQEAIWQKVFMGLGLQREELDEYFTGPAFLAWHRMGNLHAWGGPLSPAWMLNQLL 154 (666)
T ss_pred hHHH--HhHhhHHHHcCcceeeccchhHHHHHHHHHHcCCCHHHHHHhcccHHHHHHHHhcCccccCCCCCHHHHHHHHH
Confidence 4455 99999999999998877743 21100 0 0 012344332 344
Q ss_pred HHHHHHHHHHHcCCeEEEecCCC--C--------CC-------CCCCCCCCCCC-CccCCchhHHHHHHHHHHHHHHHhC
Q 019395 104 VLDNAFDWAEKYGVKVIVDLHAA--P--------GS-------QNGNEHSATRD-GFQEWGDSNVADTVAVIDFLAARYA 165 (341)
Q Consensus 104 ~ld~~i~~a~~~gi~vildlh~~--~--------g~-------~~~~~~~g~~~-~~~~w~~~~~~~~~~~~~~la~~y~ 165 (341)
.=+++|+...+.||.++|--+.. | -+ -|.+...-.+. -.....+-.++---.+++.+.+.|+
T Consensus 155 LqkrIidrm~~lGmTpvLPaFaG~VP~al~rlfPesnf~rl~rWn~f~s~~~C~l~v~P~dplF~eIgs~Flr~~~kefG 234 (666)
T KOG2233|consen 155 LQKRIIDRMLELGMTPVLPAFAGHVPDALERLFPESNFTRLPRWNNFTSRYSCMLLVSPFDPLFQEIGSTFLRHQIKEFG 234 (666)
T ss_pred HHHHHHHHHHHcCCCccchhhccccHHHHHHhCchhceeeccccCCCCcceeeeEEccCCcchHHHHHHHHHHHHHHHhC
Confidence 45679999999999999854321 1 11 11111100000 0000113456666789999999999
Q ss_pred CCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCceEEEe
Q 019395 166 NRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMS 212 (341)
Q Consensus 166 ~~~~v~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~v~~~ 212 (341)
+..++.+-|.+||-..+...++-+++...+++++.+++|++.+=++.
T Consensus 235 ~~tniy~~DpFNE~~Pp~sepey~~staaAiyesm~kvdknaVWllQ 281 (666)
T KOG2233|consen 235 GVTNIYSADPFNEILPPESEPEYVKSTAAAIYESMKKVDKNAVWLLQ 281 (666)
T ss_pred CcccccccCcccccCCCCCChHHHHHHHHHHHHHHhccCcceEEeee
Confidence 98899999999998766667788999999999999999999765554
No 43
>PLN02161 beta-amylase
Probab=97.06 E-value=0.012 Score=56.66 Aligned_cols=136 Identities=16% Similarity=0.278 Sum_probs=88.8
Q ss_pred HHHhhccCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCe--EEEecCCCCCCCCCCC
Q 019395 57 DHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVK--VIVDLHAAPGSQNGNE 134 (341)
Q Consensus 57 ~~~~~~~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~--vildlh~~~g~~~~~~ 134 (341)
++++.. +..|+.||.+|+.-|=+++ ||-..+...+..|+ |+.++++++.+++.||+ ||+.+|...|.-.+
T Consensus 114 ~~~~al--~~~L~~LK~~GVdGVmvDV-WWGiVE~~~p~~Yd---WsgY~~l~~mvr~~GLKlq~vmSFHqCGGNvGd-- 185 (531)
T PLN02161 114 KRLKAL--TVSLKALKLAGVHGIAVEV-WWGIVERFSPLEFK---WSLYEELFRLISEAGLKLHVALCFHSNMHLFGG-- 185 (531)
T ss_pred CCHHHH--HHHHHHHHHcCCCEEEEEe-eeeeeecCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCC--
Confidence 344444 8999999999999999999 77777766666775 99999999999999997 67788876432111
Q ss_pred CCCCCCCccCCchhHHHHHHHHHHHHHH----HhCC-----CCceeEEEeecCCCCCCC-ChHHHHHHHHHHHHHHHhcC
Q 019395 135 HSATRDGFQEWGDSNVADTVAVIDFLAA----RYAN-----RPSLAAIELINEPLAPGV-ALDTLKSYYKAGYDAVRKYT 204 (341)
Q Consensus 135 ~~g~~~~~~~w~~~~~~~~~~~~~~la~----~y~~-----~~~v~~~el~NEP~~~~~-~~~~~~~~~~~~~~aIR~~~ 204 (341)
..+ ..-|.|. ++...+ -|+| ++.-+.+.+-|+|...+. +.+.+.+|++..-+...+--
T Consensus 186 ~~~--IpLP~WV----------~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~~ 253 (531)
T PLN02161 186 KGG--ISLPLWI----------REIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSFSTKFEPYI 253 (531)
T ss_pred ccC--ccCCHHH----------HhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 111 1234442 111111 1333 234566778899987554 34677788877777776654
Q ss_pred CCceEEEe
Q 019395 205 STAYVIMS 212 (341)
Q Consensus 205 p~~~v~~~ 212 (341)
.++++-|.
T Consensus 254 ~~~I~eI~ 261 (531)
T PLN02161 254 GNVIEEIS 261 (531)
T ss_pred cCceEEEE
Confidence 45444443
No 44
>PLN02803 beta-amylase
Probab=96.91 E-value=0.018 Score=55.69 Aligned_cols=130 Identities=17% Similarity=0.385 Sum_probs=85.2
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCe--EEEecCCCCCCCCCCCCCCCCCCc
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVK--VIVDLHAAPGSQNGNEHSATRDGF 142 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~--vildlh~~~g~~~~~~~~g~~~~~ 142 (341)
++.|+.||++|+.-|=++| ||-..+...+..|+ |+.++++++.+++.||+ ||+.+|...|.. +. .. ...-
T Consensus 110 ~~~L~~LK~~GVdGVmvDV-WWGiVE~~~p~~Yd---WsgY~~l~~mvr~~GLKlq~vmSFHqCGGNV-GD-~~--~IpL 181 (548)
T PLN02803 110 NASLMALRSAGVEGVMVDA-WWGLVEKDGPMKYN---WEGYAELVQMVQKHGLKLQVVMSFHQCGGNV-GD-SC--SIPL 181 (548)
T ss_pred HHHHHHHHHcCCCEEEEEe-eeeeeccCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCC-CC-cc--cccC
Confidence 7899999999999999999 77777766666775 99999999999999997 677888764321 11 11 1123
Q ss_pred cCCchhHHHHHHHHHHHHHH----HhCCC-----CceeEEEeecCCCCCCCC-hHHHHHHHHHHHHHHHhcCCCceEEEe
Q 019395 143 QEWGDSNVADTVAVIDFLAA----RYANR-----PSLAAIELINEPLAPGVA-LDTLKSYYKAGYDAVRKYTSTAYVIMS 212 (341)
Q Consensus 143 ~~w~~~~~~~~~~~~~~la~----~y~~~-----~~v~~~el~NEP~~~~~~-~~~~~~~~~~~~~aIR~~~p~~~v~~~ 212 (341)
|.|. ++...+ -|+|+ ..-+.+.+-|+|...+.+ .+.+.+|++..-+....--.++++-|.
T Consensus 182 P~WV----------~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l~~~I~eI~ 251 (548)
T PLN02803 182 PPWV----------LEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFKDYLGGVIAEIQ 251 (548)
T ss_pred CHHH----------HHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHHHHhcCceEEEE
Confidence 3342 111111 13332 234557788888875543 466777777777776665445554444
No 45
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=96.90 E-value=0.081 Score=48.70 Aligned_cols=252 Identities=14% Similarity=0.169 Sum_probs=127.4
Q ss_pred hhhhhhhhcCcchHHHHHHHHHhhccCHHHHHHHH-----HCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHH
Q 019395 38 GEYQITNGFGPDKAPQVLQDHWDSYITDEDFKFLS-----SNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWA 112 (341)
Q Consensus 38 ~~~~~~~~~g~~~~~~~~~~~~~~~~~e~d~~~i~-----~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a 112 (341)
..-+..++||.-+ +..|--..+.+-++.+= .+||..+|++|.--.+--. +.++ ...++|. .-+-+
T Consensus 42 ~~~Q~IrGFGg~~-----~~Aw~g~lsaa~l~t~Fgng~~~lg~si~Rv~I~~ndfsl~---g~~d-~w~kels-~Ak~~ 111 (433)
T COG5520 42 AKHQVIRGFGGMN-----SSAWAGDLSAAQLETLFGNGANQLGFSILRVPIDSNDFSLG---GSAD-NWYKELS-TAKSA 111 (433)
T ss_pred hhhceeecccccc-----cchhhhhhHHHHHHHHhcCCccccCceEEEEEecccccccC---CCcc-hhhhhcc-cchhh
Confidence 3444556666311 13344444555566552 3789999999953111111 1111 0112221 22337
Q ss_pred HHcCCeEEEecCCCCCCCCC-CCCCCCCCCccCCchhHHHHHHHHHHHHHHHhCCCC-ceeEEEeecCCCCCC------C
Q 019395 113 EKYGVKVIVDLHAAPGSQNG-NEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRP-SLAAIELINEPLAPG------V 184 (341)
Q Consensus 113 ~~~gi~vildlh~~~g~~~~-~~~~g~~~~~~~w~~~~~~~~~~~~~~la~~y~~~~-~v~~~el~NEP~~~~------~ 184 (341)
.++|+.|+-.....|.+.-. +...|...+. -..+-...+++++...+..++++- .+.++.+-|||...+ -
T Consensus 112 in~g~ivfASPWspPa~Mktt~~~ngg~~g~--Lk~e~Ya~yA~~l~~fv~~m~~nGvnlyalSVQNEPd~~p~~d~~~w 189 (433)
T COG5520 112 INPGMIVFASPWSPPASMKTTNNRNGGNAGR--LKYEKYADYADYLNDFVLEMKNNGVNLYALSVQNEPDYAPTYDWCWW 189 (433)
T ss_pred cCCCcEEEecCCCCchhhhhccCcCCccccc--cchhHhHHHHHHHHHHHHHHHhCCCceeEEeeccCCcccCCCCcccc
Confidence 89999999999888765321 1111111111 112344556667777777777664 677889999999732 1
Q ss_pred ChHHHHHHHHHHHHHHHhcCCCceEEEeCCCCC-CC-hhhhhhccCC-CCcEEEEeeecCCCCccccCccchhhhHHHHh
Q 019395 185 ALDTLKSYYKAGYDAVRKYTSTAYVIMSNRLGP-AD-HKELLSFASG-LSRVVIDVHYYNLFSNNFNGLNVQQNIDYVNN 261 (341)
Q Consensus 185 ~~~~~~~~~~~~~~aIR~~~p~~~v~~~~~~~~-~~-~~~~~~~~~~-~~~~v~~~H~Y~~~~~~~~~~~~~~~~~~~~~ 261 (341)
++++..+|+.+- .+.+..+.-|++.+.++- .+ .+..+..+.. ..-.++.+|.|..-.. +.
T Consensus 190 tpQe~~rF~~qy---l~si~~~~rV~~pes~~~~~~~~dp~lnDp~a~a~~~ilg~H~Ygg~v~-----------~~--- 252 (433)
T COG5520 190 TPQEELRFMRQY---LASINAEMRVIIPESFKDLPNMSDPILNDPKALANMDILGTHLYGGQVS-----------DQ--- 252 (433)
T ss_pred cHHHHHHHHHHh---hhhhccccEEecchhcccccccccccccCHhHhcccceeEeeecccccc-----------cc---
Confidence 334555555443 333444555666554321 11 1111111111 1235899999953110 00
Q ss_pred hhhhhhhhhhcc--CCCceEEEeecCC-CCCCCCCHHHHHHHHHHHHHHHccCCCcEEEeccccC
Q 019395 262 QRASDLGAVTTS--NGPLTFVGEWTCE-WNVKDASKQDYQRFANAQLDVYGRATFGWAYWAHKCE 323 (341)
Q Consensus 262 ~~~~~~~~~~~~--~~~pv~vGE~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~W~~k~~ 323 (341)
...+.+. .++-+|++|-... +++.+.+++...-+........+...-|+.+|.....
T Consensus 253 -----p~~lak~~~~gKdlwmte~y~~esd~~s~dr~~~~~~~hi~~gm~~gg~~ayv~W~i~~~ 312 (433)
T COG5520 253 -----PYPLAKQKPAGKDLWMTECYPPESDPNSADREALHVALHIHIGMTEGGFQAYVWWNIRLD 312 (433)
T ss_pred -----hhhHhhCCCcCCceEEeecccCCCCCCcchHHHHHHHHHHHhhccccCccEEEEEEEeec
Confidence 0011121 2567999997543 4433334444444444444445556778888877643
No 46
>PRK12313 glycogen branching enzyme; Provisional
Probab=96.88 E-value=0.055 Score=55.19 Aligned_cols=147 Identities=16% Similarity=0.150 Sum_probs=80.6
Q ss_pred HHHHHHHHHCCCCEEEc-Ccccccc-----cCCCCCCCcc--cchHHHHHHHHHHHHHcCCeEEEec---CCCCCCC--C
Q 019395 65 DEDFKFLSSNGINAVRI-PVGWWIA-----NDPTPPKPFV--GGSSKVLDNAFDWAEKYGVKVIVDL---HAAPGSQ--N 131 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRl-pi~~~~~-----~~~~~~~~~~--~~~l~~ld~~i~~a~~~gi~vildl---h~~~g~~--~ 131 (341)
++-++.|+++|+|+|=| ||.-... -++...-..+ =+..+.|+++|+.|+++||+||||+ |..+... .
T Consensus 174 ~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~V~nH~~~~~~~~~ 253 (633)
T PRK12313 174 DELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILDWVPGHFPKDDDGLA 253 (633)
T ss_pred HHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCccccc
Confidence 44469999999999986 4421000 0000000011 1357899999999999999999996 3322110 0
Q ss_pred CCCC-------CCCCCCccCCc--------hhHHHHHHHHHHHHHHHhCCCCceeEEEee-cC------------CCC-C
Q 019395 132 GNEH-------SATRDGFQEWG--------DSNVADTVAVIDFLAARYANRPSLAAIELI-NE------------PLA-P 182 (341)
Q Consensus 132 ~~~~-------~g~~~~~~~w~--------~~~~~~~~~~~~~la~~y~~~~~v~~~el~-NE------------P~~-~ 182 (341)
.++. .+.......|. +..++..++.++..++.|+=+ .+- +|.. +. |.. .
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~iD-G~R-~D~~~~~~~~d~~~~~~~~~~~~~ 331 (633)
T PRK12313 254 YFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYHLD-GLR-VDAVSNMLYLDYDEEGEWTPNKYG 331 (633)
T ss_pred ccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhCCc-EEE-EcChhhhhhcccccccCcCCcccC
Confidence 0110 00000111232 567777788888888876321 111 2211 11 110 0
Q ss_pred CCChHHHHHHHHHHHHHHHhcCCCceEEEeC
Q 019395 183 GVALDTLKSYYKAGYDAVRKYTSTAYVIMSN 213 (341)
Q Consensus 183 ~~~~~~~~~~~~~~~~aIR~~~p~~~v~~~~ 213 (341)
+.....-..+.+.+.+.||+..|+..++-+.
T Consensus 332 ~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~ 362 (633)
T PRK12313 332 GRENLEAIYFLQKLNEVVYLEHPDVLMIAEE 362 (633)
T ss_pred CCCCcHHHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 1111134678899999999999997666653
No 47
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=96.81 E-value=0.049 Score=54.41 Aligned_cols=133 Identities=20% Similarity=0.247 Sum_probs=74.7
Q ss_pred HHHHHHHHCCCCEEEc-Cccc------ccccCCCCCCCcc--cchHHHHHHHHHHHHHcCCeEEEec---CCCCCCCCCC
Q 019395 66 EDFKFLSSNGINAVRI-PVGW------WIANDPTPPKPFV--GGSSKVLDNAFDWAEKYGVKVIVDL---HAAPGSQNGN 133 (341)
Q Consensus 66 ~d~~~i~~~G~N~VRl-pi~~------~~~~~~~~~~~~~--~~~l~~ld~~i~~a~~~gi~vildl---h~~~g~~~~~ 133 (341)
+-++.|+++|+|+|=| ||.- |-. ++......+ -+..+.|+++|+.|+++||+||||+ |..+.+....
T Consensus 115 ~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY-~~~~~~~~~~~~G~~~e~k~lV~~aH~~Gi~VilD~V~NH~~~~~~~~~ 193 (542)
T TIGR02402 115 EKLPYLADLGITAIELMPVAQFPGTRGWGY-DGVLPYAPHNAYGGPDDLKALVDAAHGLGLGVILDVVYNHFGPEGNYLP 193 (542)
T ss_pred HhhHHHHHcCCCEEEeCccccCCCCCCCCC-CccCccccccccCCHHHHHHHHHHHHHCCCEEEEEEccCCCCCcccccc
Confidence 4489999999999998 3410 100 010000001 1357899999999999999999997 4332211000
Q ss_pred CCCC--CCCCccCC------c-h---hHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHH
Q 019395 134 EHSA--TRDGFQEW------G-D---SNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVR 201 (341)
Q Consensus 134 ~~~g--~~~~~~~w------~-~---~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR 201 (341)
.... .......| . + ..++..++.++..++.|+= ..+- +|....-.. ..-..+.+++.+++|
T Consensus 194 ~~~~y~~~~~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e~~i-DGfR-~D~~~~~~~-----~~~~~~l~~~~~~~~ 266 (542)
T TIGR02402 194 RYAPYFTDRYSTPWGAAINFDGPGSDEVRRYILDNALYWLREYHF-DGLR-LDAVHAIAD-----TSAKHILEELAREVH 266 (542)
T ss_pred ccCccccCCCCCCCCCccccCCCcHHHHHHHHHHHHHHHHHHhCC-cEEE-EeCHHHhcc-----ccHHHHHHHHHHHHH
Confidence 0000 00011122 1 3 5667777888888877732 2222 444333221 112467888888899
Q ss_pred hcCCC
Q 019395 202 KYTST 206 (341)
Q Consensus 202 ~~~p~ 206 (341)
++.|+
T Consensus 267 ~~~p~ 271 (542)
T TIGR02402 267 ELAAE 271 (542)
T ss_pred HHCCC
Confidence 98887
No 48
>PLN00197 beta-amylase; Provisional
Probab=96.75 E-value=0.015 Score=56.51 Aligned_cols=59 Identities=19% Similarity=0.463 Sum_probs=50.7
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCe--EEEecCCCC
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVK--VIVDLHAAP 127 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~--vildlh~~~ 127 (341)
++.|+.||++|+.-|=+++ ||-..+...+..|+ |+.+.++++.+++.||+ ||+.+|...
T Consensus 130 ~~~L~~LK~~GVdGVmvDv-WWGiVE~~~p~~Yd---WsgY~~L~~mvr~~GLKlq~VmSFHqCG 190 (573)
T PLN00197 130 KASLQALKSAGVEGIMMDV-WWGLVERESPGVYN---WGGYNELLEMAKRHGLKVQAVMSFHQCG 190 (573)
T ss_pred HHHHHHHHHcCCCEEEEee-eeeeeccCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEecccC
Confidence 7899999999999999999 77777766666775 99999999999999997 677889743
No 49
>PLN02905 beta-amylase
Probab=96.67 E-value=0.024 Score=55.77 Aligned_cols=121 Identities=17% Similarity=0.390 Sum_probs=81.8
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCe--EEEecCCCCCCCCCCCCCCCCCCc
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVK--VIVDLHAAPGSQNGNEHSATRDGF 142 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~--vildlh~~~g~~~~~~~~g~~~~~ 142 (341)
++.|+.||.+|+.-|=+++ ||-..+...+..|+ |+.+.++++.+++.||+ ||+.+|...|.. +.. ....-
T Consensus 289 ~a~L~aLK~aGVdGVmvDV-WWGiVE~~gP~~Yd---WsgY~~L~~mvr~~GLKlqvVMSFHqCGGNV-GD~---~~IPL 360 (702)
T PLN02905 289 LKQLRILKSINVDGVKVDC-WWGIVEAHAPQEYN---WNGYKRLFQMVRELKLKLQVVMSFHECGGNV-GDD---VCIPL 360 (702)
T ss_pred HHHHHHHHHcCCCEEEEee-eeeeeecCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCC-CCc---ccccC
Confidence 8899999999999999999 77777766666775 99999999999999997 677888764321 111 01223
Q ss_pred cCCchhHHHHHHHHHHHHHH-----HhCCC-----CceeEEEeecCCCCCC-CChHHHHHHHHHHHHHHHhcC
Q 019395 143 QEWGDSNVADTVAVIDFLAA-----RYANR-----PSLAAIELINEPLAPG-VALDTLKSYYKAGYDAVRKYT 204 (341)
Q Consensus 143 ~~w~~~~~~~~~~~~~~la~-----~y~~~-----~~v~~~el~NEP~~~~-~~~~~~~~~~~~~~~aIR~~~ 204 (341)
|.|. ++ +.+ -|+|. +.-+.|-+-|+|...+ ++.+.+..|++..-.....--
T Consensus 361 P~WV----------~e-~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl 422 (702)
T PLN02905 361 PHWV----------AE-IGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEFF 422 (702)
T ss_pred CHHH----------HH-hhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 3342 11 111 13332 3345577889997644 455677777777777776643
No 50
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=96.66 E-value=0.0047 Score=56.83 Aligned_cols=174 Identities=23% Similarity=0.269 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCCccCCchhHHHHHHHHHHHHHHHh-CCCC-ceeEEEeecCC
Q 019395 102 SKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARY-ANRP-SLAAIELINEP 179 (341)
Q Consensus 102 l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~~w~~~~~~~~~~~~~~la~~y-~~~~-~v~~~el~NEP 179 (341)
.++.|++.+.|.+-|+.+|.+|-...|...... ......|...+.+.++ +| +++. .|.+|||.|||
T Consensus 108 ~~rwd~l~~F~~~tG~~liFgLNAL~g~~~~~~----~~~~g~WnssNA~~Ll--------~Yt~skgy~I~~WELGNEl 175 (319)
T PF03662_consen 108 MSRWDELNNFAQKTGLKLIFGLNALLGRRQLAD----RDWDGSWNSSNAQSLL--------KYTASKGYNIDSWELGNEL 175 (319)
T ss_dssp ----HHHHHHHHHHT-EEEEEE-TTTS-HHHHH----HHHHHHHHHH-TTTEE--------EEEESS-GGG--------H
T ss_pred hhHHHHHHHHHHHhCCEEEEEecccCCCCCCCC----CCcCCCCChHHHHHHH--------HHHHHcCCCcccccccccc
Confidence 578899999999999999999988754210000 0000012111111111 12 1222 46689999999
Q ss_pred CCCC----CChHHHHHHHHHHHHHHHhc---CCCceEEEe-CCCCCCC-hhhhhhccCCCCcEEEEeeecCCCCccccCc
Q 019395 180 LAPG----VALDTLKSYYKAGYDAVRKY---TSTAYVIMS-NRLGPAD-HKELLSFASGLSRVVIDVHYYNLFSNNFNGL 250 (341)
Q Consensus 180 ~~~~----~~~~~~~~~~~~~~~aIR~~---~p~~~v~~~-~~~~~~~-~~~~~~~~~~~~~~v~~~H~Y~~~~~~~~~~ 250 (341)
...+ .+..++.+=+.++-++++++ ....+.+++ +++.... ...|+....+..-.+++.|+|..-...+++.
T Consensus 176 ~g~g~~~~v~a~qyakD~~~Lr~il~~iy~~~~~~P~v~gP~~~~d~~w~~~FL~~~g~~~vD~vT~H~Y~lg~g~d~~l 255 (319)
T PF03662_consen 176 NGSGVGASVSAEQYAKDFIQLRKILNEIYKNALPGPLVVGPGGFFDADWLKEFLKASGPGVVDAVTWHHYNLGSGRDPAL 255 (319)
T ss_dssp HHHSSSTT--HHHHHHHH---HHHHHHHHHH-TT---EEEEEESS-GGGHHHHHHHTTTT--SEEEEEEEEE--TT-TT-
T ss_pred CCCCCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCCeEECCCCCCCHHHHHHHHHhcCCCccCEEEEEecCCCCCchHHH
Confidence 8632 34444443333333333332 122344455 3222122 3455554222235689999995311111111
Q ss_pred c----chhhhHHHHhhhhhhhhhhhcc--CCCceEEEeecCCCC
Q 019395 251 N----VQQNIDYVNNQRASDLGAVTTS--NGPLTFVGEWTCEWN 288 (341)
Q Consensus 251 ~----~~~~~~~~~~~~~~~~~~~~~~--~~~pv~vGE~g~~~~ 288 (341)
. ....++.+..... .+....++ .+.++++||=|.+++
T Consensus 256 ~~~~l~p~~Ld~~~~~~~-~~~~~v~~~~p~~~~WlGEtg~Ay~ 298 (319)
T PF03662_consen 256 IEDFLNPSYLDTLADTFQ-KLQQVVQEYGPGKPVWLGETGSAYN 298 (319)
T ss_dssp HHHHTS--HHHHHHHHHH-HHH-----HHH---EEEEEEEEEST
T ss_pred HHHhcChhhhhHHHHHHH-HHhhhhcccCCCCCeEEeCcccccC
Confidence 0 0112333332221 22222222 346799999998875
No 51
>PLN02801 beta-amylase
Probab=96.61 E-value=0.021 Score=54.94 Aligned_cols=113 Identities=19% Similarity=0.376 Sum_probs=76.2
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCe--EEEecCCCCCCCC-----------
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVK--VIVDLHAAPGSQN----------- 131 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~--vildlh~~~g~~~----------- 131 (341)
++.|+.||++|+.-|=+++ ||-..+...+..|+ |+.++++++.+++.||+ ||+.+|...|...
T Consensus 40 ~~~L~~LK~~GVdGVmvDV-WWGiVE~~~P~~Yd---WsgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP~WV 115 (517)
T PLN02801 40 EKQLKRLKEAGVDGVMVDV-WWGIVESKGPKQYD---WSAYRSLFELVQSFGLKIQAIMSFHQCGGNVGDAVNIPIPQWV 115 (517)
T ss_pred HHHHHHHHHcCCCEEEEee-eeeeeccCCCCccC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCHHH
Confidence 7899999999999999999 77777765556775 99999999999999997 6788897433210
Q ss_pred -------C----CCCCCCCCC---------ccCCc-hhHHHHHHHHHHHHHHHhCCC---CceeEEEeecCCCC
Q 019395 132 -------G----NEHSATRDG---------FQEWG-DSNVADTVAVIDFLAARYANR---PSLAAIELINEPLA 181 (341)
Q Consensus 132 -------~----~~~~g~~~~---------~~~w~-~~~~~~~~~~~~~la~~y~~~---~~v~~~el~NEP~~ 181 (341)
. .+.+|.+.. .+.+. +..++.+.++.+.+.+.|++. ..|..+++-=-|.+
T Consensus 116 ~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l~~~~I~eI~VGlGP~G 189 (517)
T PLN02801 116 RDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMADFLEAGVIIDIEVGLGPAG 189 (517)
T ss_pred HHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHHhccCCeeEEEEEcccccc
Confidence 0 011222111 11122 345788888888888877662 35555555544443
No 52
>PRK05402 glycogen branching enzyme; Provisional
Probab=96.59 E-value=0.11 Score=53.89 Aligned_cols=146 Identities=16% Similarity=0.188 Sum_probs=82.1
Q ss_pred HHHHHHHHHCCCCEEEc-Ccccccc-----cCCCCCCCcc--cchHHHHHHHHHHHHHcCCeEEEec---CCCCCCC--C
Q 019395 65 DEDFKFLSSNGINAVRI-PVGWWIA-----NDPTPPKPFV--GGSSKVLDNAFDWAEKYGVKVIVDL---HAAPGSQ--N 131 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRl-pi~~~~~-----~~~~~~~~~~--~~~l~~ld~~i~~a~~~gi~vildl---h~~~g~~--~ 131 (341)
++-++.|+++|+|+|=| ||.-... -++...-..+ =+..+.|+++|+.|+++||+||||+ |..+... .
T Consensus 269 ~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~V~NH~~~~~~~~~ 348 (726)
T PRK05402 269 DQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDWVPAHFPKDAHGLA 348 (726)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCccchh
Confidence 44468999999999987 4421000 0010000011 1357899999999999999999997 4322110 0
Q ss_pred CCC------CCCC-CCCccCC-------c-hhHHHHHHHHHHHHHHHhCCCCceeEEEe-ecCC---------------C
Q 019395 132 GNE------HSAT-RDGFQEW-------G-DSNVADTVAVIDFLAARYANRPSLAAIEL-INEP---------------L 180 (341)
Q Consensus 132 ~~~------~~g~-~~~~~~w-------~-~~~~~~~~~~~~~la~~y~~~~~v~~~el-~NEP---------------~ 180 (341)
.++ +... ....+.| . +..++..++.++..+++|+=+ .+- +|. .+.. .
T Consensus 349 ~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~iD-G~R-~D~v~~~~~~~~~~~~g~~~~~~~ 426 (726)
T PRK05402 349 RFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFHID-GLR-VDAVASMLYLDYSRKEGEWIPNIY 426 (726)
T ss_pred ccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhCCc-EEE-ECCHHHhhhccccccccccccccc
Confidence 011 0000 0011223 1 566777778888888776321 111 221 1221 1
Q ss_pred CCCCChHHHHHHHHHHHHHHHhcCCCceEEEeC
Q 019395 181 APGVALDTLKSYYKAGYDAVRKYTSTAYVIMSN 213 (341)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~aIR~~~p~~~v~~~~ 213 (341)
. +.....-..+.+.+.+.||+..|+.+++-+.
T Consensus 427 ~-~~~~~~~~~fl~~~~~~~~~~~p~~~liaE~ 458 (726)
T PRK05402 427 G-GRENLEAIDFLRELNAVVHEEFPGALTIAEE 458 (726)
T ss_pred c-CcCCHHHHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 1 1112245678899999999999998777663
No 53
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=96.56 E-value=0.085 Score=53.49 Aligned_cols=136 Identities=17% Similarity=0.225 Sum_probs=76.5
Q ss_pred HHHHHHHHCCCCEEEc-Cccc--------------ccc-----cCCCC---CCCcc-cchHHHHHHHHHHHHHcCCeEEE
Q 019395 66 EDFKFLSSNGINAVRI-PVGW--------------WIA-----NDPTP---PKPFV-GGSSKVLDNAFDWAEKYGVKVIV 121 (341)
Q Consensus 66 ~d~~~i~~~G~N~VRl-pi~~--------------~~~-----~~~~~---~~~~~-~~~l~~ld~~i~~a~~~gi~vil 121 (341)
+-++.|+++|+|+|=| ||.- |-. +.|.+ .++.. .+..+.++++|+.|+++||+|||
T Consensus 168 ~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~Vil 247 (605)
T TIGR02104 168 TGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGIRVIM 247 (605)
T ss_pred hHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCCEEEE
Confidence 3489999999999988 4421 111 00000 00000 11368899999999999999999
Q ss_pred ec---CCCCCCCCCCC-----------CCCCCC-----C-ccCC-chhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCC
Q 019395 122 DL---HAAPGSQNGNE-----------HSATRD-----G-FQEW-GDSNVADTVAVIDFLAARYANRPSLAAIELINEPL 180 (341)
Q Consensus 122 dl---h~~~g~~~~~~-----------~~g~~~-----~-~~~w-~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~ 180 (341)
|+ |......+.+. ..|... + .... .+..++..++.++..+++|+ -..+- +|++..-
T Consensus 248 DvV~NH~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~W~~e~~-iDGfR-~D~~~~~- 324 (605)
T TIGR02104 248 DVVYNHTYSREESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLYWVKEYN-IDGFR-FDLMGIH- 324 (605)
T ss_pred EEEcCCccCCCCCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHHHHHHcC-CCEEE-EechhcC-
Confidence 97 44321111110 001000 0 0001 15566777788888888773 23333 5666432
Q ss_pred CCCCChHHHHHHHHHHHHHHHhcCCCceEEEe
Q 019395 181 APGVALDTLKSYYKAGYDAVRKYTSTAYVIMS 212 (341)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~aIR~~~p~~~v~~~ 212 (341)
+ ..+.+++.+++++..|+..++-+
T Consensus 325 ----~----~~~~~~~~~~~~~~~p~~~ligE 348 (605)
T TIGR02104 325 ----D----IETMNEIRKALNKIDPNILLYGE 348 (605)
T ss_pred ----C----HHHHHHHHHHHHhhCCCeEEEEc
Confidence 2 23556777788888897766544
No 54
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=96.56 E-value=0.022 Score=52.36 Aligned_cols=174 Identities=20% Similarity=0.227 Sum_probs=89.3
Q ss_pred HhhccCHHHHHHHHHCCCCEEEcCcccccc-------------------cCCC------------CCCCccc----chHH
Q 019395 59 WDSYITDEDFKFLSSNGINAVRIPVGWWIA-------------------NDPT------------PPKPFVG----GSSK 103 (341)
Q Consensus 59 ~~~~~~e~d~~~i~~~G~N~VRlpi~~~~~-------------------~~~~------------~~~~~~~----~~l~ 103 (341)
|+.| |+.|++||=.|+|.+=-.++-+.. ..|. -++|+.+ ...+
T Consensus 18 W~rW--EreIDWMALnGiNl~La~~GqEavw~~v~~~~G~t~~ei~~ff~GPA~laW~rMgNl~gwgGPLp~~w~~~q~~ 95 (333)
T PF05089_consen 18 WERW--EREIDWMALNGINLPLAIVGQEAVWQRVLRELGLTDEEIREFFTGPAFLAWWRMGNLQGWGGPLPQSWIDQQAE 95 (333)
T ss_dssp HHHH--HHHHHHHHHTT--EEE--TTHHHHHHHHHGGGT--HHHHHHHS--TT-HHHHHTTS--STT----TTHHHHHHH
T ss_pred HHHH--HHHHHHHHHhCCchhhhhhHHHHHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHhCCcccCCCCCCHHHHHHHHH
Confidence 5555 999999999999987665542110 0010 0234432 3455
Q ss_pred HHHHHHHHHHHcCCeEEEecCCC--CCC-------CC----CCCCCCCCCCccCCc----hhHHHHHHHHHHHHHHHhCC
Q 019395 104 VLDNAFDWAEKYGVKVIVDLHAA--PGS-------QN----GNEHSATRDGFQEWG----DSNVADTVAVIDFLAARYAN 166 (341)
Q Consensus 104 ~ld~~i~~a~~~gi~vildlh~~--~g~-------~~----~~~~~g~~~~~~~w~----~~~~~~~~~~~~~la~~y~~ 166 (341)
.=++|++..++.||.+||=-... |.. .+ +.+. |- ..+.|. +-..+-...+.+...+.|+
T Consensus 96 Lq~kIl~RmreLGm~PVLPaF~G~VP~~~~~~~P~a~i~~~~~W~-~f--~~~~~L~P~dplF~~i~~~F~~~q~~~yG- 171 (333)
T PF05089_consen 96 LQKKILDRMRELGMTPVLPAFAGHVPRAFKRKYPNANITRQGNWN-GF--CRPYFLDPTDPLFAEIAKLFYEEQIKLYG- 171 (333)
T ss_dssp HHHHHHHHHHHHT-EEEEE--S-EE-TTHHHHSTT--EE---EET-TE--E--EEE-SS--HHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHcCCcccCCCcCCCCChHHHhcCCCCEEeeCCCcC-CC--CCCceeCCCCchHHHHHHHHHHHHHHhcC-
Confidence 55679999999999999833211 110 00 0000 10 011122 3345556678888888897
Q ss_pred CCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCceEEEeC------C-CCCCChhhhhhccCCCCcEEEEee
Q 019395 167 RPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSN------R-LGPADHKELLSFASGLSRVVIDVH 238 (341)
Q Consensus 167 ~~~v~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~v~~~~------~-~~~~~~~~~~~~~~~~~~~v~~~H 238 (341)
..++.+.|++||-..+....+.+....+++++++++.||+.+=++.+ . |...-...++.-.+.+.-+|+|..
T Consensus 172 ~~~~Y~~D~FnE~~p~~~~~~~l~~~s~~v~~am~~~dp~AvWvmQgWlF~~~~fW~~~~~~a~L~~Vp~~~mliLDL~ 250 (333)
T PF05089_consen 172 TDHIYAADPFNEGGPPSGDPEYLANVSKAVYKAMQAADPDAVWVMQGWLFYYDPFWTPNPIKALLSGVPKGRMLILDLF 250 (333)
T ss_dssp --SEEE--TTTTS---TTS---HHHHHHHHHHHHHHH-TT-EEEEEE--------BTTBS-HHHHTT-SGGGEEEEETT
T ss_pred CCceeCCCccCCCCCCCCchHHHHHHHHHHHHHHHhhCCCcEEEEcccccccccccCcchHHHHHcCCCCCCeEEEEcc
Confidence 67899999999977545555679999999999999999986544432 1 332223555554345556777764
No 55
>PLN02705 beta-amylase
Probab=96.54 E-value=0.023 Score=55.73 Aligned_cols=59 Identities=17% Similarity=0.424 Sum_probs=50.7
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCe--EEEecCCCC
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVK--VIVDLHAAP 127 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~--vildlh~~~ 127 (341)
++.|+.||.+|+.-|=++| ||-.++...+..|+ |+.+.++++.+++.||+ ||+.+|...
T Consensus 271 ~a~L~aLK~aGVdGVmvDV-WWGiVE~~~P~~Yd---WsgY~~L~~mvr~~GLKlqvVmSFHqCG 331 (681)
T PLN02705 271 RQELSHMKSLNVDGVVVDC-WWGIVEGWNPQKYV---WSGYRELFNIIREFKLKLQVVMAFHEYG 331 (681)
T ss_pred HHHHHHHHHcCCCEEEEee-eeeEeecCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEeeccC
Confidence 7889999999999999999 77777765566775 99999999999999998 677889753
No 56
>smart00642 Aamy Alpha-amylase domain.
Probab=96.52 E-value=0.011 Score=49.57 Aligned_cols=60 Identities=23% Similarity=0.281 Sum_probs=40.9
Q ss_pred HHHHHHHHHCCCCEEEcCccccccc--------CCCCCCCcc--cchHHHHHHHHHHHHHcCCeEEEecC
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIAN--------DPTPPKPFV--GGSSKVLDNAFDWAEKYGVKVIVDLH 124 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~--------~~~~~~~~~--~~~l~~ld~~i~~a~~~gi~vildlh 124 (341)
.+.++.|+++|+|+|-|+=.+.... ++......+ -+..+.++++|+.|+++||+||+|+-
T Consensus 22 ~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V 91 (166)
T smart00642 22 IEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVV 91 (166)
T ss_pred HHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 4557799999999999853221111 111111111 13679999999999999999999984
No 57
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=96.51 E-value=0.11 Score=53.48 Aligned_cols=147 Identities=19% Similarity=0.208 Sum_probs=82.7
Q ss_pred HHHHHHHHHCCCCEEEc-Cccc------ccccCCCCCCCcc--cchHHHHHHHHHHHHHcCCeEEEecC---CCCCC---
Q 019395 65 DEDFKFLSSNGINAVRI-PVGW------WIANDPTPPKPFV--GGSSKVLDNAFDWAEKYGVKVIVDLH---AAPGS--- 129 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRl-pi~~------~~~~~~~~~~~~~--~~~l~~ld~~i~~a~~~gi~vildlh---~~~g~--- 129 (341)
++-+..|+++|+|+|=| ||.- |-. ++......+ -+..+.|+++|+.|+++||+||||+- .....
T Consensus 254 ~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY-~~~~~fa~~~~~Gtp~dlk~LVd~aH~~GI~VilDvV~nH~~~~~~~g 332 (758)
T PLN02447 254 DDVLPRIKALGYNAVQLMAIQEHAYYGSFGY-HVTNFFAVSSRSGTPEDLKYLIDKAHSLGLRVLMDVVHSHASKNTLDG 332 (758)
T ss_pred HHHHHHHHHcCCCEEEECCccccCCCCCCCc-CcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecccccccccccc
Confidence 56799999999999988 3310 100 000000000 13468899999999999999999973 22211
Q ss_pred CCCCC-------CCCCCCCccCCc--------hhHHHHHHHHHHHHHHHhCCC-------CceeE------EEe---ecC
Q 019395 130 QNGNE-------HSATRDGFQEWG--------DSNVADTVAVIDFLAARYANR-------PSLAA------IEL---INE 178 (341)
Q Consensus 130 ~~~~~-------~~g~~~~~~~w~--------~~~~~~~~~~~~~la~~y~~~-------~~v~~------~el---~NE 178 (341)
.+.++ +.+.......|. +..++..++.++..+++|+=+ ..++- .+. .||
T Consensus 333 l~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~IDGfRfDaV~smlY~~hg~~~~f~~~~~~ 412 (758)
T PLN02447 333 LNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEYKFDGFRFDGVTSMLYHHHGLQMAFTGNYNE 412 (758)
T ss_pred ccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHhCcccccccchhhhhccccCcccccccCccc
Confidence 01111 111111112232 455666777888888776321 11110 011 133
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHhcCCCceEEEeC
Q 019395 179 PLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSN 213 (341)
Q Consensus 179 P~~~~~~~~~~~~~~~~~~~aIR~~~p~~~v~~~~ 213 (341)
-.+ +.....-..|++.+-..|++..|+.++|.++
T Consensus 413 ~~g-~~~d~~a~~fL~~~N~~i~~~~p~~~~IAEd 446 (758)
T PLN02447 413 YFG-MATDVDAVVYLMLANDLLHGLYPEAVTIAED 446 (758)
T ss_pred ccC-CccChHHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 222 2223456778899999999999998877763
No 58
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=96.49 E-value=0.064 Score=55.01 Aligned_cols=56 Identities=21% Similarity=0.408 Sum_probs=38.6
Q ss_pred HHHHHHHCCCCEEEc-Cccc---------------ccccCCCC----CCCccc-chHHHHHHHHHHHHHcCCeEEEec
Q 019395 67 DFKFLSSNGINAVRI-PVGW---------------WIANDPTP----PKPFVG-GSSKVLDNAFDWAEKYGVKVIVDL 123 (341)
Q Consensus 67 d~~~i~~~G~N~VRl-pi~~---------------~~~~~~~~----~~~~~~-~~l~~ld~~i~~a~~~gi~vildl 123 (341)
-|+.|+++|+|+|=| ||.- |-. ++.. ...|.. +..+.|+++|+.|+++||+||||+
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGY-d~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGY-NTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDV 265 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCc-CcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 589999999999988 4421 100 0100 011211 347899999999999999999997
No 59
>PLN02960 alpha-amylase
Probab=96.49 E-value=0.12 Score=53.61 Aligned_cols=149 Identities=17% Similarity=0.171 Sum_probs=83.4
Q ss_pred CHHHHHHHHHCCCCEEEc-Cccc------ccccCCCCCCCcc--cchHHHHHHHHHHHHHcCCeEEEec---CCCCCCCC
Q 019395 64 TDEDFKFLSSNGINAVRI-PVGW------WIANDPTPPKPFV--GGSSKVLDNAFDWAEKYGVKVIVDL---HAAPGSQN 131 (341)
Q Consensus 64 ~e~d~~~i~~~G~N~VRl-pi~~------~~~~~~~~~~~~~--~~~l~~ld~~i~~a~~~gi~vildl---h~~~g~~~ 131 (341)
+++-+..|+++|+|+|=| ||.= |-. ++......+ -+..+.|+++|+.|+++||.||||+ |..+...+
T Consensus 419 ~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY-~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~VILDvV~NH~~~d~~~ 497 (897)
T PLN02960 419 TQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGY-KVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMV 497 (897)
T ss_pred HHHHHHHHHHcCCCEEEECCcccCCCCCCCCC-CcccCCCcccccCCHHHHHHHHHHHHHCCCEEEEEecccccCCcccc
Confidence 355699999999999998 3320 000 000000000 1347899999999999999999997 43332111
Q ss_pred C---CC-------CCCCCCCccCCc--------hhHHHHHHHHHHHHHHHhCCC----Cce---eEEE--eecCCC----
Q 019395 132 G---NE-------HSATRDGFQEWG--------DSNVADTVAVIDFLAARYANR----PSL---AAIE--LINEPL---- 180 (341)
Q Consensus 132 ~---~~-------~~g~~~~~~~w~--------~~~~~~~~~~~~~la~~y~~~----~~v---~~~e--l~NEP~---- 180 (341)
+ ++ +.+.......|. +..++..++.++...+.|+=+ .+| +-.+ ..+++.
T Consensus 498 ~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~EyhIDGfR~DAV~sMlY~d~g~~~~~G~~~~ 577 (897)
T PLN02960 498 GLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEYRVDGFQFHSLGSMLYTHNGFASFTGDLDE 577 (897)
T ss_pred chhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHHCCCceeecccceeeeeccCccccCCcccc
Confidence 1 11 111111112232 556677778888888777421 122 2111 011111
Q ss_pred -CCCCChHHHHHHHHHHHHHHHhcCCCceEEEeC
Q 019395 181 -APGVALDTLKSYYKAGYDAVRKYTSTAYVIMSN 213 (341)
Q Consensus 181 -~~~~~~~~~~~~~~~~~~aIR~~~p~~~v~~~~ 213 (341)
........-..|++.+-.+|++..|+.++|.++
T Consensus 578 ~~n~~~d~~Ai~fL~~lN~~v~~~~P~vilIAEd 611 (897)
T PLN02960 578 YCNQYVDRDALIYLILANEMLHQLHPNIITIAED 611 (897)
T ss_pred cCCccCCchHHHHHHHHHHHHHhhCCCeEEEEEC
Confidence 000112356678888888899999998888763
No 60
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=96.46 E-value=0.019 Score=54.17 Aligned_cols=127 Identities=19% Similarity=0.418 Sum_probs=74.4
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCe--EEEecCCCCCCCCCCCCCCCCCCc
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVK--VIVDLHAAPGSQNGNEHSATRDGF 142 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~--vildlh~~~g~~~~~~~~g~~~~~ 142 (341)
+..++.||++|+..|=++| ||-..+...+..|+ |+.++++++.+++.||+ ||+.+|...|.- +.+ + ...-
T Consensus 19 ~~~L~~LK~~GV~GVmvdv-WWGiVE~~~p~~yd---Ws~Y~~l~~~vr~~GLk~~~vmsfH~cGgNv-gD~-~--~IpL 90 (402)
T PF01373_consen 19 EAQLRALKSAGVDGVMVDV-WWGIVEGEGPQQYD---WSGYRELFEMVRDAGLKLQVVMSFHQCGGNV-GDD-C--NIPL 90 (402)
T ss_dssp HHHHHHHHHTTEEEEEEEE-EHHHHTGSSTTB------HHHHHHHHHHHHTT-EEEEEEE-S-BSSST-TSS-S--EB-S
T ss_pred HHHHHHHHHcCCcEEEEEe-EeeeeccCCCCccC---cHHHHHHHHHHHHcCCeEEEEEeeecCCCCC-CCc-c--CCcC
Confidence 8899999999999999999 67777766556775 99999999999999998 566778764321 111 0 1122
Q ss_pred cCCchhHHHHHHHHHHHHHH---HhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCceEEE
Q 019395 143 QEWGDSNVADTVAVIDFLAA---RYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIM 211 (341)
Q Consensus 143 ~~w~~~~~~~~~~~~~~la~---~y~~~~~v~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~v~~ 211 (341)
|.|. ++...+ -|+|+....--|-+. |...+.+.+.+..|++...+..++-- +.+.-|
T Consensus 91 P~Wv----------~~~~~~~di~ytd~~G~rn~E~lS-p~~~grt~~~Y~dfm~sF~~~f~~~~-~~I~~I 150 (402)
T PF01373_consen 91 PSWV----------WEIGKKDDIFYTDRSGNRNKEYLS-PVLDGRTLQCYSDFMRSFRDNFSDYL-STITEI 150 (402)
T ss_dssp -HHH----------HHHHHHSGGEEE-TTS-EEEEEE--CTBTTBCHHHHHHHHHHHHHHCHHHH-TGEEEE
T ss_pred CHHH----------HhccccCCcEEECCCCCcCcceee-cccCCchHHHHHHHHHHHHHHHHHHH-hhheEE
Confidence 3342 111111 255555443344444 76545446677777777666666554 554444
No 61
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=96.33 E-value=0.17 Score=54.31 Aligned_cols=102 Identities=14% Similarity=0.197 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHcCCeEEEec---CCCCCCC-----CCC----CCCCCC-----CCccCCc-hhHHHHHHHHHHHHHHH
Q 019395 102 SKVLDNAFDWAEKYGVKVIVDL---HAAPGSQ-----NGN----EHSATR-----DGFQEWG-DSNVADTVAVIDFLAAR 163 (341)
Q Consensus 102 l~~ld~~i~~a~~~gi~vildl---h~~~g~~-----~~~----~~~g~~-----~~~~~w~-~~~~~~~~~~~~~la~~ 163 (341)
++.|+++|+.|+++||+||||+ |....+. .+. +..|.. .+..... +...+..++.++..++.
T Consensus 554 i~EfK~LV~alH~~GI~VILDVVyNHt~~~~~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv~e 633 (1111)
T TIGR02102 554 IAEFKNLINEIHKRGMGVILDVVYNHTAKVYIFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLVDE 633 (1111)
T ss_pred HHHHHHHHHHHHHCCCEEEEecccccccccccccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHHHh
Confidence 6889999999999999999997 4332110 000 000100 0000111 45567777888888888
Q ss_pred hCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCceEEEeCCC
Q 019395 164 YANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRL 215 (341)
Q Consensus 164 y~~~~~v~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~v~~~~~~ 215 (341)
|+= ..+- ||++.. .+. .+++.+..++++++|+.++ ++.+|
T Consensus 634 y~V-DGFR-fDl~g~-----~d~----~~~~~~~~~l~~~dP~~~l-iGE~W 673 (1111)
T TIGR02102 634 FKV-DGFR-FDMMGD-----HDA----ASIEIAYKEAKAINPNIIM-IGEGW 673 (1111)
T ss_pred cCC-cEEE-Eecccc-----CCH----HHHHHHHHHHHHhCcCEEE-EEecc
Confidence 842 3444 777743 122 2455666777888997644 45544
No 62
>PRK03705 glycogen debranching enzyme; Provisional
Probab=96.30 E-value=0.13 Score=52.55 Aligned_cols=111 Identities=17% Similarity=0.267 Sum_probs=63.4
Q ss_pred HHHHHHHCCCCEEEc-Cccc---------------ccccCCC----CCCCccc---chHHHHHHHHHHHHHcCCeEEEec
Q 019395 67 DFKFLSSNGINAVRI-PVGW---------------WIANDPT----PPKPFVG---GSSKVLDNAFDWAEKYGVKVIVDL 123 (341)
Q Consensus 67 d~~~i~~~G~N~VRl-pi~~---------------~~~~~~~----~~~~~~~---~~l~~ld~~i~~a~~~gi~vildl 123 (341)
-++.|+++|+|+|=| ||.- |-. ++. +...|.. ..++.++++|+.|+++||+||||+
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGY-d~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGY-NPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCc-ccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 489999999999988 4421 100 000 0011211 246889999999999999999997
Q ss_pred ---CCCCCCCCC-------CCC--------CCC------CCCccCCc-hhHHHHHHHHHHHHHHHhCCCCceeEEEeecC
Q 019395 124 ---HAAPGSQNG-------NEH--------SAT------RDGFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINE 178 (341)
Q Consensus 124 ---h~~~g~~~~-------~~~--------~g~------~~~~~~w~-~~~~~~~~~~~~~la~~y~~~~~v~~~el~NE 178 (341)
|...+...+ .+. .|. +.....+. +..++..++.++..++.|+= ..+- +|++.+
T Consensus 263 V~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~iid~l~~W~~e~gV-DGFR-fD~a~~ 340 (658)
T PRK03705 263 VFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDWAIDCLRYWVETCHV-DGFR-FDLATV 340 (658)
T ss_pred cccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHHHHHHHHHHHHHhCC-CEEE-EEcHhh
Confidence 443211100 000 000 00111122 56677778888888888732 3443 677666
Q ss_pred CC
Q 019395 179 PL 180 (341)
Q Consensus 179 P~ 180 (341)
-.
T Consensus 341 l~ 342 (658)
T PRK03705 341 LG 342 (658)
T ss_pred hC
Confidence 53
No 63
>PLN02877 alpha-amylase/limit dextrinase
Probab=96.23 E-value=0.2 Score=52.80 Aligned_cols=112 Identities=8% Similarity=0.021 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHHHHcCCeEEEec---CCCCCCC----CCCC-----------CCCCCC-----CccCCc-hhHHHHHHHH
Q 019395 101 SSKVLDNAFDWAEKYGVKVIVDL---HAAPGSQ----NGNE-----------HSATRD-----GFQEWG-DSNVADTVAV 156 (341)
Q Consensus 101 ~l~~ld~~i~~a~~~gi~vildl---h~~~g~~----~~~~-----------~~g~~~-----~~~~w~-~~~~~~~~~~ 156 (341)
....++++|+.|+++||+||+|+ |....+. +.++ ..|... +...-. +...+..++.
T Consensus 464 RI~efk~mV~~lH~~GI~VImDVVyNHt~~~g~~~~~s~ld~~vP~YY~r~~~~G~~~ns~c~n~~Ase~~mvrklIlDs 543 (970)
T PLN02877 464 RIIEFRKMVQALNRIGLRVVLDVVYNHLHSSGPFDENSVLDKIVPGYYLRRNSDGFIENSTCVNNTASEHYMVDRLIVDD 543 (970)
T ss_pred hHHHHHHHHHHHHHCCCEEEEEECCccccCCCCcchhhcccCCCCCceEEECCCCCcccCCccCCCccCCHHHHHHHHHH
Confidence 36789999999999999999996 5432110 1000 011000 000001 3445666788
Q ss_pred HHHHHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCceEEEeCCCC
Q 019395 157 IDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRLG 216 (341)
Q Consensus 157 ~~~la~~y~~~~~v~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~v~~~~~~~ 216 (341)
++..++.|+ -...- ||++..-.. .+....+...+++....+.++...+++++.+|.
T Consensus 544 l~yW~~ey~-VDGFR-FDlmg~i~~--~tm~~~~~~L~~i~~~~~~~dg~~i~lyGEgW~ 599 (970)
T PLN02877 544 LLNWAVNYK-VDGFR-FDLMGHLMK--RTMVRAKDALQSLTLERDGVDGSSIYLYGEGWD 599 (970)
T ss_pred HHHHHHHhC-CCEEE-EEccccccH--HHHHHHHHHHHHHhhhhcccCCCceEEEEeCCC
Confidence 899998884 33444 788877542 111222333333333334445455677788775
No 64
>PRK14705 glycogen branching enzyme; Provisional
Probab=96.18 E-value=0.23 Score=53.77 Aligned_cols=145 Identities=21% Similarity=0.258 Sum_probs=82.5
Q ss_pred HHHHHHHHHCCCCEEEc-Ccc------cccccCCCC----CCCcccchHHHHHHHHHHHHHcCCeEEEec---CCCCCCC
Q 019395 65 DEDFKFLSSNGINAVRI-PVG------WWIANDPTP----PKPFVGGSSKVLDNAFDWAEKYGVKVIVDL---HAAPGSQ 130 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRl-pi~------~~~~~~~~~----~~~~~~~~l~~ld~~i~~a~~~gi~vildl---h~~~g~~ 130 (341)
++-++.|+++|+|+|=| ||. .|-. ++.. ...| +..+.++++|+.|+++||.||||+ |..+...
T Consensus 769 ~~lldYlk~LGvt~IeLmPv~e~p~~~swGY-~~~~y~ap~~ry--Gt~~dfk~lVd~~H~~GI~VILD~V~nH~~~d~~ 845 (1224)
T PRK14705 769 KELVDYVKWLGFTHVEFMPVAEHPFGGSWGY-QVTSYFAPTSRF--GHPDEFRFLVDSLHQAGIGVLLDWVPAHFPKDSW 845 (1224)
T ss_pred HHHHHHHHHhCCCEEEECccccCCCCCCCCC-CccccCCcCccc--CCHHHHHHHHHHHHHCCCEEEEEeccccCCcchh
Confidence 45579999999999977 442 1110 1110 0111 357899999999999999999997 3221110
Q ss_pred -----CC---CCCCCC-CCCccCCc--------hhHHHHHHHHHHHHHHHhCCCC----ceeE---EEeec-----CCCC
Q 019395 131 -----NG---NEHSAT-RDGFQEWG--------DSNVADTVAVIDFLAARYANRP----SLAA---IELIN-----EPLA 181 (341)
Q Consensus 131 -----~~---~~~~g~-~~~~~~w~--------~~~~~~~~~~~~~la~~y~~~~----~v~~---~el~N-----EP~~ 181 (341)
.+ +.+... ....+.|. +...+..++.+....++|+=+- .|.. .+--- .|+.
T Consensus 846 ~l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyhiDGfR~Dav~~mly~Dysr~~g~w~pn~ 925 (1224)
T PRK14705 846 ALAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFHIDGLRVDAVASMLYLDYSREEGQWRPNR 925 (1224)
T ss_pred hhhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCCCcEEEeehhhhhhcccccccccccccc
Confidence 00 111100 01122342 5666777788888888875321 1110 11111 1221
Q ss_pred C-CCChHHHHHHHHHHHHHHHhcCCCceEEEe
Q 019395 182 P-GVALDTLKSYYKAGYDAVRKYTSTAYVIMS 212 (341)
Q Consensus 182 ~-~~~~~~~~~~~~~~~~aIR~~~p~~~v~~~ 212 (341)
. +.....-..|.+.+...|++..|+.++|-+
T Consensus 926 ~gg~en~~ai~fl~~ln~~v~~~~p~~~~IAE 957 (1224)
T PRK14705 926 FGGRENLEAISFLQEVNATVYKTHPGAVMIAE 957 (1224)
T ss_pred cCCccChHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 1 112234567899999999999998877775
No 65
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=96.08 E-value=0.056 Score=55.00 Aligned_cols=63 Identities=24% Similarity=0.360 Sum_probs=44.5
Q ss_pred CHHHHHHHHHCCCCEEEc-CcccccccCCC------------------CCCCcc-----cchHHHHHHHHHHHHHcCCeE
Q 019395 64 TDEDFKFLSSNGINAVRI-PVGWWIANDPT------------------PPKPFV-----GGSSKVLDNAFDWAEKYGVKV 119 (341)
Q Consensus 64 ~e~d~~~i~~~G~N~VRl-pi~~~~~~~~~------------------~~~~~~-----~~~l~~ld~~i~~a~~~gi~v 119 (341)
.+..|+.||++|+++|.| ||..+...... +.+.|. .+.+..++.+|+.++++||.|
T Consensus 202 ~~~~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~V 281 (697)
T COG1523 202 EPVIIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEV 281 (697)
T ss_pred cccHHHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEE
Confidence 355699999999999998 66433221100 011222 235889999999999999999
Q ss_pred EEec---CCC
Q 019395 120 IVDL---HAA 126 (341)
Q Consensus 120 ildl---h~~ 126 (341)
|||+ |.+
T Consensus 282 ILDVVfNHTa 291 (697)
T COG1523 282 ILDVVFNHTA 291 (697)
T ss_pred EEEEeccCcc
Confidence 9997 664
No 66
>PRK10785 maltodextrin glucosidase; Provisional
Probab=96.05 E-value=0.26 Score=49.96 Aligned_cols=59 Identities=15% Similarity=0.182 Sum_probs=39.8
Q ss_pred HHHHHHHHHCCCCEEEcC-ccccccc---CCCCCCCccc--chHHHHHHHHHHHHHcCCeEEEec
Q 019395 65 DEDFKFLSSNGINAVRIP-VGWWIAN---DPTPPKPFVG--GSSKVLDNAFDWAEKYGVKVIVDL 123 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlp-i~~~~~~---~~~~~~~~~~--~~l~~ld~~i~~a~~~gi~vildl 123 (341)
.+-++.|+++|+|+|=|. |.-.... +.......++ +..+.|+++|+.|+++||+||||+
T Consensus 182 ~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~ 246 (598)
T PRK10785 182 SEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDG 246 (598)
T ss_pred HHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 456899999999999983 3210000 0000011111 357899999999999999999998
No 67
>PRK12568 glycogen branching enzyme; Provisional
Probab=96.02 E-value=0.41 Score=49.15 Aligned_cols=145 Identities=14% Similarity=0.182 Sum_probs=82.0
Q ss_pred HHHHHHHHHCCCCEEEc-Ccc------cccccCCCCCCCcc--cchHHHHHHHHHHHHHcCCeEEEec---CCCCCCC--
Q 019395 65 DEDFKFLSSNGINAVRI-PVG------WWIANDPTPPKPFV--GGSSKVLDNAFDWAEKYGVKVIVDL---HAAPGSQ-- 130 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRl-pi~------~~~~~~~~~~~~~~--~~~l~~ld~~i~~a~~~gi~vildl---h~~~g~~-- 130 (341)
++-+..|+++|+|+|=| ||. .|-. ++......+ -+..+.++++|+.|+++||+||||+ |..+...
T Consensus 273 ~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY-~~~~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~V~nH~~~d~~~l 351 (730)
T PRK12568 273 EQLIPYVQQLGFTHIELLPITEHPFGGSWGY-QPLGLYAPTARHGSPDGFAQFVDACHRAGIGVILDWVSAHFPDDAHGL 351 (730)
T ss_pred HHHHHHHHHcCCCEEEECccccCCCCCCCCC-CCCcCCccCcccCCHHHHHHHHHHHHHCCCEEEEEeccccCCcccccc
Confidence 56689999999999987 441 1111 111000001 1357899999999999999999997 3222110
Q ss_pred CCCC------CCCCC-CCccCCc--------hhHHHHHHHHHHHHHHHhCCCC-------ceeEEE--------eecCCC
Q 019395 131 NGNE------HSATR-DGFQEWG--------DSNVADTVAVIDFLAARYANRP-------SLAAIE--------LINEPL 180 (341)
Q Consensus 131 ~~~~------~~g~~-~~~~~w~--------~~~~~~~~~~~~~la~~y~~~~-------~v~~~e--------l~NEP~ 180 (341)
..++ +...+ .....|. +..++..++.++...++|.=+- .++..+ +-|+-.
T Consensus 352 ~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyhIDG~R~DAva~mly~d~~r~~g~w~pn~~g 431 (730)
T PRK12568 352 AQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYHLDGLRVDAVASMLYRDYGRAEGEWVPNAHG 431 (730)
T ss_pred ccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhCceEEEEcCHhHhhhhccccccccccccccC
Confidence 0111 10000 0112332 5666777788888887763211 111111 112211
Q ss_pred CCCCChHHHHHHHHHHHHHHHhcCCCceEEEe
Q 019395 181 APGVALDTLKSYYKAGYDAVRKYTSTAYVIMS 212 (341)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~aIR~~~p~~~v~~~ 212 (341)
+.....-..|.+++-.+|++..|+..++-+
T Consensus 432 --g~en~ea~~Fl~~ln~~v~~~~P~~~~IAE 461 (730)
T PRK12568 432 --GRENLEAVAFLRQLNREIASQFPGVLTIAE 461 (730)
T ss_pred --CccChHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 111124567899999999999999887776
No 68
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=95.95 E-value=0.047 Score=54.16 Aligned_cols=108 Identities=16% Similarity=0.180 Sum_probs=68.8
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCCccC
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQE 144 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~~ 144 (341)
++-++++++.|+|+|-..|.| ...+|.++ .|+=+..-.|.++|+.|++.||+|+|-+--+ -...++++| -+.
T Consensus 52 ~~~i~k~k~~Gln~IqtYVfW-n~Hep~~g-~y~FsG~~DlvkFikl~~~~GLyv~LRiGPy--IcaEw~~GG----~P~ 123 (649)
T KOG0496|consen 52 PDLIKKAKAGGLNVIQTYVFW-NLHEPSPG-KYDFSGRYDLVKFIKLIHKAGLYVILRIGPY--ICAEWNFGG----LPW 123 (649)
T ss_pred HHHHHHHHhcCCceeeeeeec-ccccCCCC-cccccchhHHHHHHHHHHHCCeEEEecCCCe--EEecccCCC----cch
Confidence 889999999999999999987 56666654 5554455667777999999999999965411 111112222 222
Q ss_pred Cc------------hhHHHHHHHHHHHHHH----HhCCC-CceeEEEeecCCC
Q 019395 145 WG------------DSNVADTVAVIDFLAA----RYANR-PSLAAIELINEPL 180 (341)
Q Consensus 145 w~------------~~~~~~~~~~~~~la~----~y~~~-~~v~~~el~NEP~ 180 (341)
|. +.......++++.|+. -|... --|+.-++=||=.
T Consensus 124 wL~~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk~L~~~qGGPIIl~QIENEYG 176 (649)
T KOG0496|consen 124 WLRNVPGIVFRTDNEPFKAEMERWTTKIVPMMKKLFASQGGPIILVQIENEYG 176 (649)
T ss_pred hhhhCCceEEecCChHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEeechhh
Confidence 21 2334445555555555 23322 2366689999964
No 69
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=95.92 E-value=0.093 Score=51.15 Aligned_cols=150 Identities=19% Similarity=0.207 Sum_probs=95.7
Q ss_pred CHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCCcc
Q 019395 64 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQ 143 (341)
Q Consensus 64 ~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~ 143 (341)
++-.++-.+++|+|.+|+ | .++.|.+ |.+-+.|.+.||-|.-|+.-..... +..
T Consensus 359 ~~~LL~Sv~e~~MN~lRV----W------GGGvYEs------d~FY~lad~lGilVWQD~MFACAlY---------Pt~- 412 (867)
T KOG2230|consen 359 TEFLLDSVAEVGMNMLRV----W------GGGVYES------DYFYQLADSLGILVWQDMMFACALY---------PTN- 412 (867)
T ss_pred HHHHHHHHHHhCcceEEE----e------cCccccc------hhHHHHhhhccceehhhhHHHhhcc---------cCc-
Confidence 456677789999999998 2 2334432 4566889999999999987542110 000
Q ss_pred CCchhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCC-------------CCCChHHHHHHHHHHHH-HHHhcCCCceE
Q 019395 144 EWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLA-------------PGVALDTLKSYYKAGYD-AVRKYTSTAYV 209 (341)
Q Consensus 144 ~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~-------------~~~~~~~~~~~~~~~~~-aIR~~~p~~~v 209 (341)
++..+-..+-++.=+.|.+.+|.|+.|.--||-.. .....++..-+|.+.+. .....++.++.
T Consensus 413 ---~eFl~sv~eEV~yn~~Rls~HpSviIfsgNNENEaAl~~nWy~~sf~~~~~~~kdyvlly~~~i~el~l~~~~srPf 489 (867)
T KOG2230|consen 413 ---DEFLSSVREEVRYNAMRLSHHPSVIIFSGNNENEAALVQNWYGTSFERDRFESKDYVLLYANVIHELKLVSHSSRPF 489 (867)
T ss_pred ---HHHHHHHHHHHHHHHHhhccCCeEEEEeCCCccHHHHHhhhhcccccccchhhhhhhHHHHHHHHHHHhhcCCCCCc
Confidence 24445555666677789999999998999999653 01223455556666444 44455688888
Q ss_pred EEeCC-CCC-CChhhhhhccCCCCcEEEEeeecCCC
Q 019395 210 IMSNR-LGP-ADHKELLSFASGLSRVVIDVHYYNLF 243 (341)
Q Consensus 210 ~~~~~-~~~-~~~~~~~~~~~~~~~~v~~~H~Y~~~ 243 (341)
+++++ .|. +..+.+... .+.+|..-|+|+|..+
T Consensus 490 i~SSPsNG~ete~e~~VS~-NP~dn~~GDVHfYdy~ 524 (867)
T KOG2230|consen 490 IVSSPSNGKETEPENYVSS-NPQDNQNGDVHFYDYT 524 (867)
T ss_pred eecCCCCCcccCccccccC-CCccccCCceEeeehh
Confidence 87743 221 223344333 4567778899999643
No 70
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=95.90 E-value=0.18 Score=40.39 Aligned_cols=104 Identities=15% Similarity=0.216 Sum_probs=60.8
Q ss_pred HHHHHHHHHCCCCEEEcCcc---cccccCC--CCCCCcccchHHHHHHHHHHHHHcCCeEEEecCC-C--------CCC-
Q 019395 65 DEDFKFLSSNGINAVRIPVG---WWIANDP--TPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA-A--------PGS- 129 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~---~~~~~~~--~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~-~--------~g~- 129 (341)
++-++.+++.|+|+|-+... -+.+-+. .+..|... -+.|.++|+.|++.||+|++-+-. . |..
T Consensus 3 ~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~--~Dllge~v~a~h~~Girv~ay~~~~~d~~~~~~HPeW~ 80 (132)
T PF14871_consen 3 EQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLK--RDLLGEQVEACHERGIRVPAYFDFSWDEDAAERHPEWF 80 (132)
T ss_pred HHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCC--cCHHHHHHHHHHHCCCEEEEEEeeecChHHHHhCCcee
Confidence 56678899999999999432 1122111 11123322 588999999999999999974321 1 110
Q ss_pred ---CCCCCCCCCCCCccCCc-----hhHHHHHHHHHHHHHHHhCCCCcee
Q 019395 130 ---QNGNEHSATRDGFQEWG-----DSNVADTVAVIDFLAARYANRPSLA 171 (341)
Q Consensus 130 ---~~~~~~~g~~~~~~~w~-----~~~~~~~~~~~~~la~~y~~~~~v~ 171 (341)
.+|....+.....+.|. ..+.+...+.++++.++| +-..|+
T Consensus 81 ~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~y-~~DGiF 129 (132)
T PF14871_consen 81 VRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDRY-DVDGIF 129 (132)
T ss_pred eECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHcC-CCCEEE
Confidence 11111111111222243 456788889999999999 444554
No 71
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=95.88 E-value=0.15 Score=55.74 Aligned_cols=136 Identities=15% Similarity=0.247 Sum_probs=74.1
Q ss_pred HHHHHHHHHCCCCEEEc-Cccccccc--------------CCC----CCCCcccchHHHHHHHHHHHHHcCCeEEEec--
Q 019395 65 DEDFKFLSSNGINAVRI-PVGWWIAN--------------DPT----PPKPFVGGSSKVLDNAFDWAEKYGVKVIVDL-- 123 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRl-pi~~~~~~--------------~~~----~~~~~~~~~l~~ld~~i~~a~~~gi~vildl-- 123 (341)
++.++.|+++|+|+|=| ||.-..-. ++. +...|.....+.++++|+.|+++||+||||+
T Consensus 190 ~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDvV~ 269 (1221)
T PRK14510 190 PEAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDVVF 269 (1221)
T ss_pred chhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEEcc
Confidence 46688999999999987 44211000 000 0011211267899999999999999999997
Q ss_pred -CCCCCCCC-------CCCCC-------CC---------CCCccCCc-hhHHHHHHHHHHHHHHHhCCCCceeEEEeecC
Q 019395 124 -HAAPGSQN-------GNEHS-------AT---------RDGFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINE 178 (341)
Q Consensus 124 -h~~~g~~~-------~~~~~-------g~---------~~~~~~w~-~~~~~~~~~~~~~la~~y~~~~~v~~~el~NE 178 (341)
|...+... +.+.+ +. +...+... +...+..++.++..++ | +-+.+- +|+..+
T Consensus 270 NHt~~~~~~~p~~~~~~~d~~~yy~~~~~~~~~y~~~~G~gn~~n~~~p~v~~~i~d~lr~Wv~-~-gVDGfR-fDla~~ 346 (1221)
T PRK14510 270 NHTGESNHYGPTLSAYGSDNSPYYRLEPGNPKEYENWWGCGNLPNLERPFILRLPMDVLRSWAK-R-GVDGFR-LDLADE 346 (1221)
T ss_pred ccccCCCCCCCcccccCCCCCCceEecCCCCCcccCCCCCCCccccCCHHHHHHHHHHHHHHHH-h-CCCEEE-Eechhh
Confidence 44332110 00000 00 00011111 4455556677777777 5 334444 666665
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHhcCCCceE
Q 019395 179 PLAPGVALDTLKSYYKAGYDAVRKYTSTAYV 209 (341)
Q Consensus 179 P~~~~~~~~~~~~~~~~~~~aIR~~~p~~~v 209 (341)
-.. .+ ..+.+.....++++.|+.++
T Consensus 347 l~r--~~----~~f~~~~~~~l~ai~~d~~l 371 (1221)
T PRK14510 347 LAR--EP----DGFIDEFRQFLKAMDQDPVL 371 (1221)
T ss_pred hcc--Cc----cchHHHHHHHHHHhCCCcCc
Confidence 531 01 13455666677777776544
No 72
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=95.85 E-value=0.018 Score=52.55 Aligned_cols=59 Identities=25% Similarity=0.348 Sum_probs=40.1
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCC-----ccc--chHHHHHHHHHHHHHcCCeEEEec
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKP-----FVG--GSSKVLDNAFDWAEKYGVKVIVDL 123 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~-----~~~--~~l~~ld~~i~~a~~~gi~vildl 123 (341)
.+-++.|+++|+|+|-|+=-+..-....+..+ .++ +..+.++++|+.|+++||+||+|+
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~ 72 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDV 72 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEee
Confidence 45588999999999999532210000000011 111 468999999999999999999997
No 73
>PRK14706 glycogen branching enzyme; Provisional
Probab=95.50 E-value=0.7 Score=47.11 Aligned_cols=147 Identities=14% Similarity=0.129 Sum_probs=80.6
Q ss_pred HHHHHHHHHCCCCEEEc-Cccc------ccccCCCCCCCcc--cchHHHHHHHHHHHHHcCCeEEEec---CCCCCC--C
Q 019395 65 DEDFKFLSSNGINAVRI-PVGW------WIANDPTPPKPFV--GGSSKVLDNAFDWAEKYGVKVIVDL---HAAPGS--Q 130 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRl-pi~~------~~~~~~~~~~~~~--~~~l~~ld~~i~~a~~~gi~vildl---h~~~g~--~ 130 (341)
++-++.|+++|+|+|=| |+.- |-. ++...-..+ -+..+.++++|+.|+++||+||||+ |..+.. .
T Consensus 171 ~~l~~ylk~lG~t~velmPv~e~~~~~~wGY-~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~~~l 249 (639)
T PRK14706 171 HRLGEYVTYMGYTHVELLGVMEHPFDGSWGY-QVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPTDESGL 249 (639)
T ss_pred HHHHHHHHHcCCCEEEccchhcCCCCCCCCc-CcccccccccccCCHHHHHHHHHHHHHCCCEEEEEecccccCcchhhh
Confidence 44468899999999988 3310 100 000000000 1357899999999999999999997 332211 0
Q ss_pred CCCC------CCCCCCC-ccCCc--------hhHHHHHHHHHHHHHHHhCCCC-------ceeEEEeec---CCCC-CCC
Q 019395 131 NGNE------HSATRDG-FQEWG--------DSNVADTVAVIDFLAARYANRP-------SLAAIELIN---EPLA-PGV 184 (341)
Q Consensus 131 ~~~~------~~g~~~~-~~~w~--------~~~~~~~~~~~~~la~~y~~~~-------~v~~~el~N---EP~~-~~~ 184 (341)
..++ +.....+ ...|. +..++..++.++...+.|.=+- .++-.+-.- .|+. .+.
T Consensus 250 ~~~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~iDG~R~Dav~~~ly~d~~~~~~~~~~~gg~ 329 (639)
T PRK14706 250 AHFDGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFHVDGLRVDAVASMLYLDFSRTEWVPNIHGGR 329 (639)
T ss_pred hccCCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeehheeecccCcccccccccCCc
Confidence 0011 0000001 11232 5667777788888887774211 111011000 1111 012
Q ss_pred ChHHHHHHHHHHHHHHHhcCCCceEEEe
Q 019395 185 ALDTLKSYYKAGYDAVRKYTSTAYVIMS 212 (341)
Q Consensus 185 ~~~~~~~~~~~~~~aIR~~~p~~~v~~~ 212 (341)
....-..+.+.+-.+||+..|+.++|.+
T Consensus 330 ~n~~a~~fl~~ln~~v~~~~p~~~~iAE 357 (639)
T PRK14706 330 ENLEAIAFLKRLNEVTHHMAPGCMMIAE 357 (639)
T ss_pred ccHHHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 2345667888999999999999877765
No 74
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=95.39 E-value=0.34 Score=44.88 Aligned_cols=147 Identities=20% Similarity=0.194 Sum_probs=85.9
Q ss_pred HHHHHHHHHCCCCEEEcCcccccc-cCCCC---------CCCcccchHHHHHHHHHHHHHcCCeEEEec----CCCCCC-
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIA-NDPTP---------PKPFVGGSSKVLDNAFDWAEKYGVKVIVDL----HAAPGS- 129 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~-~~~~~---------~~~~~~~~l~~ld~~i~~a~~~gi~vildl----h~~~g~- 129 (341)
++-++.|+++|||+|=+.+..... +=+.. +.+.....++-|..+|+.|+++||.|.-=+ -..+.+
T Consensus 22 ~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~~~~~~~~ 101 (311)
T PF02638_consen 22 DEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGFNAPDVSH 101 (311)
T ss_pred HHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeecCCCchhh
Confidence 677889999999999886643110 00111 011112258899999999999999976322 100000
Q ss_pred ---CCCC----CCCCCC------CCccCCc----hhHHHHHHHHHHHHHHHhCCCCceeEEE--ee-------cCC----
Q 019395 130 ---QNGN----EHSATR------DGFQEWG----DSNVADTVAVIDFLAARYANRPSLAAIE--LI-------NEP---- 179 (341)
Q Consensus 130 ---~~~~----~~~g~~------~~~~~w~----~~~~~~~~~~~~~la~~y~~~~~v~~~e--l~-------NEP---- 179 (341)
.+.. .+.|.. .+...|. |+.++..++.++.|+++|. -..|. +| .. +.+
T Consensus 102 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Yd-vDGIh-lDdy~yp~~~~g~~~~~~~~ 179 (311)
T PF02638_consen 102 ILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYD-VDGIH-LDDYFYPPPSFGYDFPDVAA 179 (311)
T ss_pred hhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCC-CCeEE-ecccccccccCCCCCccHHH
Confidence 0000 011100 0122233 7889999999999999994 33332 33 10 011
Q ss_pred ---------CCCCCC-------hHHHHHHHHHHHHHHHhcCCCceEEEeC
Q 019395 180 ---------LAPGVA-------LDTLKSYYKAGYDAVRKYTSTAYVIMSN 213 (341)
Q Consensus 180 ---------~~~~~~-------~~~~~~~~~~~~~aIR~~~p~~~v~~~~ 213 (341)
.....+ .+.+..+.++++++|+++.|+..+.++.
T Consensus 180 y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~~~ik~~kP~v~~sisp 229 (311)
T PF02638_consen 180 YEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIYDAIKAIKPWVKFSISP 229 (311)
T ss_pred HHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 000011 2456678999999999999998888863
No 75
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=95.39 E-value=0.36 Score=50.77 Aligned_cols=104 Identities=14% Similarity=0.149 Sum_probs=64.4
Q ss_pred hHHHHHHHHHHHHHcCCeEEEec---CCCCCCCC---CCC-----------CCCCCC-----CccCC-chhHHHHHHHHH
Q 019395 101 SSKVLDNAFDWAEKYGVKVIVDL---HAAPGSQN---GNE-----------HSATRD-----GFQEW-GDSNVADTVAVI 157 (341)
Q Consensus 101 ~l~~ld~~i~~a~~~gi~vildl---h~~~g~~~---~~~-----------~~g~~~-----~~~~w-~~~~~~~~~~~~ 157 (341)
.+..++++|+.|+++||+||+|+ |...+... .++ ..|... +...- .+...+..++.+
T Consensus 402 Ri~Efk~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~s~ld~~~P~YY~r~~~~G~~~n~~~~~d~a~e~~~Vrk~iiDsl 481 (898)
T TIGR02103 402 RIKEFREMVQALNKTGLNVVMDVVYNHTNASGPNDRSVLDKIVPGYYHRLNEDGGVENSTCCSNTATEHRMMAKLIVDSL 481 (898)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeecccccccCccCcccccccCcHhhEeeCCCCCeecCCCCcCCCCCCHHHHHHHHHHH
Confidence 47889999999999999999997 54432110 000 001100 00001 145567777888
Q ss_pred HHHHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCceEEEeCCCC
Q 019395 158 DFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRLG 216 (341)
Q Consensus 158 ~~la~~y~~~~~v~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~v~~~~~~~ 216 (341)
+..++.|+ -..+- ||++..-. ..+++++.+++|+++|+. ++++.+|.
T Consensus 482 ~~W~~ey~-VDGFR-fDlm~~~~---------~~f~~~~~~~l~~i~pdi-~l~GEgW~ 528 (898)
T TIGR02103 482 VVWAKDYK-VDGFR-FDLMGHHP---------KAQMLAAREAIKALTPEI-YFYGEGWD 528 (898)
T ss_pred HHHHHHcC-CCEEE-EechhhCC---------HHHHHHHHHHHHHhCCCE-EEEecCCC
Confidence 88888884 23444 77876542 235566677888889975 55676775
No 76
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=94.98 E-value=0.43 Score=44.89 Aligned_cols=138 Identities=16% Similarity=0.137 Sum_probs=77.6
Q ss_pred CHHHHHHHHHCCCCEEEcCcccccc--cCCCCCCCcc----cchHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCC
Q 019395 64 TDEDFKFLSSNGINAVRIPVGWWIA--NDPTPPKPFV----GGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSA 137 (341)
Q Consensus 64 ~e~d~~~i~~~G~N~VRlpi~~~~~--~~~~~~~~~~----~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g 137 (341)
+++-++.+|++|++-|=|--..-.. +=|+...+++ ...-+.+.++++.|+++||++-+-++...-.........
T Consensus 93 ~dqW~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S~~dw~~~~~~~~~ 172 (346)
T PF01120_consen 93 ADQWAKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSGPKRDIVGELADACRKYGLKFGLYYSPWDWHHPDYPPDE 172 (346)
T ss_dssp HHHHHHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEESSSCCCTTTTSSC
T ss_pred HHHHHHHHHHcCCCEEEeehhhcCccccCCCCCCcccccCCCCCCCHHHHHHHHHHHcCCeEEEEecchHhcCcccCCCc
Confidence 3677888899999999884321000 0022212232 124688999999999999999997776521111100000
Q ss_pred C--CC----CccCCchhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCceEE
Q 019395 138 T--RD----GFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVI 210 (341)
Q Consensus 138 ~--~~----~~~~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~v~ 210 (341)
. .. ....|.....+.+..-+++|.++| .+.++=||...... .+.+.. .+.++.||+..|+.+|.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~ql~EL~~~Y--~~d~lWfDg~~~~~-----~~~~~~--~~~~~~i~~~qp~~ii~ 242 (346)
T PF01120_consen 173 EGDENGPADGPGNWQRYYNEYWLAQLRELLTRY--KPDILWFDGGWPDP-----DEDWDS--AELYNWIRKLQPDVIIN 242 (346)
T ss_dssp HCHHCC--HCCHHHHHHHHHHHHHHHHHHHHCS--TESEEEEESTTSCC-----CTHHHH--HHHHHHHHHHSTTSEEE
T ss_pred cCCcccccccchhhHhHhhhhhHHHHHHHHhCC--CcceEEecCCCCcc-----ccccCH--HHHHHHHHHhCCeEEEe
Confidence 0 00 001111122336678888999999 45554488777642 123322 88899999999977654
No 77
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=94.44 E-value=0.88 Score=45.83 Aligned_cols=143 Identities=17% Similarity=0.195 Sum_probs=80.3
Q ss_pred CHHHHHHHHHCCCCEEEc-Ccccccc-----cCCCCCCCccc----chHHHHHHHHHHHHHcCCeEEEec---CCCCCCC
Q 019395 64 TDEDFKFLSSNGINAVRI-PVGWWIA-----NDPTPPKPFVG----GSSKVLDNAFDWAEKYGVKVIVDL---HAAPGSQ 130 (341)
Q Consensus 64 ~e~d~~~i~~~G~N~VRl-pi~~~~~-----~~~~~~~~~~~----~~l~~ld~~i~~a~~~gi~vildl---h~~~g~~ 130 (341)
+++-+.+|+++|+++|=| ||.=..+ -++ ...|.. +.=+.|+++|+.|+++||.||||. |-.| ..
T Consensus 167 a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~--~g~yAp~sryGtPedfk~fVD~aH~~GIgViLD~V~~HF~~-d~ 243 (628)
T COG0296 167 AIELLPYLKELGITHIELMPVAEHPGDRSWGYQG--TGYYAPTSRYGTPEDFKALVDAAHQAGIGVILDWVPNHFPP-DG 243 (628)
T ss_pred HHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCc--ceeccccccCCCHHHHHHHHHHHHHcCCEEEEEecCCcCCC-Cc
Confidence 478888999999999998 4421000 011 011111 346889999999999999999997 3222 11
Q ss_pred CC---CCCC------CCC-CCccCCc--------hhHHHHHHHHHHHHHHHhC---------------CCCceeEEEeec
Q 019395 131 NG---NEHS------ATR-DGFQEWG--------DSNVADTVAVIDFLAARYA---------------NRPSLAAIELIN 177 (341)
Q Consensus 131 ~~---~~~~------g~~-~~~~~w~--------~~~~~~~~~~~~~la~~y~---------------~~~~v~~~el~N 177 (341)
++ ++.+ ..+ .-.+.|. ++....++.-.....++|. +...-.+..+.|
T Consensus 244 ~~L~~fdg~~~~e~~~~~~~~~~~Wg~~i~~~gr~EVR~Fll~nal~Wl~~yHiDGlRvDAV~smly~d~~~~~~~~~~n 323 (628)
T COG0296 244 NYLARFDGTFLYEHEDPRRGEHTDWGTAIFNYGRNEVRNFLLANALYWLEEYHIDGLRVDAVASMLYLDYSRAEGEWVPN 323 (628)
T ss_pred chhhhcCCccccccCCcccccCCCcccchhccCcHHHHHHHHHHHHHHHHHhCCcceeeehhhhhhccchhhhhhccccc
Confidence 11 1110 000 0133454 2333444444445555543 111112223556
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHhcCCCceEEE
Q 019395 178 EPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIM 211 (341)
Q Consensus 178 EP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~v~~ 211 (341)
|... ...-....+.+.+.+.|+...|..+.|-
T Consensus 324 ~~gg--r~n~~a~efl~~~n~~i~~~~pg~~~ia 355 (628)
T COG0296 324 EYGG--RENLEAAEFLRNLNSLIHEEEPGAMTIA 355 (628)
T ss_pred ccCC--cccHHHHHHhhhhhhhhcccCCCceeee
Confidence 6542 3445778889999999999888774433
No 78
>PLN02361 alpha-amylase
Probab=94.23 E-value=0.19 Score=48.10 Aligned_cols=64 Identities=20% Similarity=0.390 Sum_probs=44.7
Q ss_pred HHHhhccCHHHHHHHHHCCCCEEEcCcccccccCCCCCCC-----ccc--chHHHHHHHHHHHHHcCCeEEEec
Q 019395 57 DHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKP-----FVG--GSSKVLDNAFDWAEKYGVKVIVDL 123 (341)
Q Consensus 57 ~~~~~~~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~-----~~~--~~l~~ld~~i~~a~~~gi~vildl 123 (341)
.+|..- .+.++.|+++|+++|=||=.... ..+....+ .++ +..+.|+++|+.|+++||+||+|+
T Consensus 26 ~~w~~i--~~kl~~l~~lG~t~iwl~P~~~~-~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 26 DWWRNL--EGKVPDLAKSGFTSAWLPPPSQS-LAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHH--HHHHHHHHHcCCCEEEeCCCCcC-CCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 466444 67789999999999999643321 11111111 111 357899999999999999999998
No 79
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=94.21 E-value=0.2 Score=50.40 Aligned_cols=61 Identities=21% Similarity=0.333 Sum_probs=41.7
Q ss_pred cCHHHHHHHHHCCCCEEEc-Ccc----------cc--cccCCCC--CCCcccchHHHHHHHHHHHHHcCCeEEEec
Q 019395 63 ITDEDFKFLSSNGINAVRI-PVG----------WW--IANDPTP--PKPFVGGSSKVLDNAFDWAEKYGVKVIVDL 123 (341)
Q Consensus 63 ~~e~d~~~i~~~G~N~VRl-pi~----------~~--~~~~~~~--~~~~~~~~l~~ld~~i~~a~~~gi~vildl 123 (341)
++++++..||.+|.|+|-| |+. |. .++-|.. +.+-.......++.+|+.|++.||.|+||+
T Consensus 256 FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s~~ri~efK~lVd~aHs~GI~VlLDV 331 (757)
T KOG0470|consen 256 FTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPESPCRINEFKELVDKAHSLGIEVLLDV 331 (757)
T ss_pred hhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCcccchHHHHHHHHHHhhCCcEEehhh
Confidence 4688899999999999998 221 10 0111210 000012247899999999999999999997
No 80
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=94.18 E-value=0.15 Score=50.93 Aligned_cols=59 Identities=14% Similarity=0.214 Sum_probs=40.0
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCC-----CCccc--chHHHHHHHHHHHHHcCCeEEEec
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPP-----KPFVG--GSSKVLDNAFDWAEKYGVKVIVDL 123 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~-----~~~~~--~~l~~ld~~i~~a~~~gi~vildl 123 (341)
.+-++.|+++|+|+|=|.=-+.......+. ..+++ +..+.|+++|+.|+++||+||+|+
T Consensus 30 ~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~ 95 (543)
T TIGR02403 30 IEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDM 95 (543)
T ss_pred HHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 456889999999999884222111100000 01111 367999999999999999999997
No 81
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=94.08 E-value=0.57 Score=45.00 Aligned_cols=122 Identities=20% Similarity=0.176 Sum_probs=77.1
Q ss_pred ccCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCc-ccchHHHHHHHHHHHHHcCCe-EEEecC-CCCCCCCCCCCCCC
Q 019395 62 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF-VGGSSKVLDNAFDWAEKYGVK-VIVDLH-AAPGSQNGNEHSAT 138 (341)
Q Consensus 62 ~~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~-~~~~l~~ld~~i~~a~~~gi~-vildlh-~~~g~~~~~~~~g~ 138 (341)
-++++.++.|+++|+|.|-|.+ ..+-+..- ... .....+.+.++++.+++.|+. |-+||- +.||
T Consensus 112 ~lt~e~l~~l~~~GvnrislGv--QS~~d~~L-~~l~R~~~~~~~~~ai~~l~~~G~~~v~~dlI~GlPg---------- 178 (400)
T PRK07379 112 TFDLEQLQGYRSLGVNRVSLGV--QAFQDELL-ALCGRSHRVKDIFAAVDLIHQAGIENFSLDLISGLPH---------- 178 (400)
T ss_pred cCCHHHHHHHHHCCCCEEEEEc--ccCCHHHH-HHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCC----------
Confidence 3689999999999999555544 22211100 000 012467788899999999998 778875 4453
Q ss_pred CCCccCCchhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCC-----------CCChHHHHHHHHHHHHHHHhcCCCc
Q 019395 139 RDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP-----------GVALDTLKSYYKAGYDAVRKYTSTA 207 (341)
Q Consensus 139 ~~~~~~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~-----------~~~~~~~~~~~~~~~~aIR~~~p~~ 207 (341)
.+.+.+.+.++.+.+ + +...|..+.+.-||..+ ..+.+....++..+.+.+++.+=.+
T Consensus 179 ---------qt~e~~~~tl~~~~~-l-~p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~Gy~~ 247 (400)
T PRK07379 179 ---------QTLEDWQASLEAAIA-L-NPTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQAGYEH 247 (400)
T ss_pred ---------CCHHHHHHHHHHHHc-C-CCCEEEEecceecCCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCce
Confidence 223445555555543 2 33466667888888742 1234566678888888888877544
No 82
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=93.63 E-value=0.22 Score=49.93 Aligned_cols=59 Identities=17% Similarity=0.323 Sum_probs=39.5
Q ss_pred HHHHHHHHHCCCCEEEcCccccccc-----CCCCCCCccc--chHHHHHHHHHHHHHcCCeEEEec
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIAN-----DPTPPKPFVG--GSSKVLDNAFDWAEKYGVKVIVDL 123 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~-----~~~~~~~~~~--~~l~~ld~~i~~a~~~gi~vildl 123 (341)
.+.++.|+++|+++|=|+=-+..-. ++......++ +..+.++++|+.|+++||+||+|+
T Consensus 36 ~~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~ 101 (551)
T PRK10933 36 TQRLDYLQKLGVDAIWLTPFYVSPQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDM 101 (551)
T ss_pred HHhhHHHHhCCCCEEEECCCCCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 4668999999999998732111000 0000001111 357899999999999999999998
No 83
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=93.58 E-value=0.95 Score=43.68 Aligned_cols=122 Identities=21% Similarity=0.190 Sum_probs=80.0
Q ss_pred hccCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCe-EEEecC-CCCCCCCCCCCCCC
Q 019395 61 SYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVK-VIVDLH-AAPGSQNGNEHSAT 138 (341)
Q Consensus 61 ~~~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~-vildlh-~~~g~~~~~~~~g~ 138 (341)
+.++.+-|+.+++.|+| |++++-+.+-+..-.---.....+....+++.+++.|+. |-+||- +.|+
T Consensus 133 ~~~~~e~~~~l~~~GvN--RiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~~in~DLIyglP~---------- 200 (416)
T COG0635 133 GTVEAEKFKALKEAGVN--RISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKAGFTSINIDLIYGLPG---------- 200 (416)
T ss_pred CCCCHHHHHHHHHcCCC--EEEeccccCCHHHHHHhcCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCC----------
Confidence 44678999999999999 888876543221000000011346677889999999986 778874 4443
Q ss_pred CCCccCCchhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCC----------CCChHHHHHHHHHHHHHHHhcCC
Q 019395 139 RDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP----------GVALDTLKSYYKAGYDAVRKYTS 205 (341)
Q Consensus 139 ~~~~~~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~----------~~~~~~~~~~~~~~~~aIR~~~p 205 (341)
.+.+.+.+-++.+.+ -+-++|..|.|.-||... -.+.+.....++.+...+.+.+=
T Consensus 201 ---------QT~~~~~~~l~~a~~--l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy 266 (416)
T COG0635 201 ---------QTLESLKEDLEQALE--LGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGY 266 (416)
T ss_pred ---------CCHHHHHHHHHHHHh--CCCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCC
Confidence 234555666666554 234578779999999962 12334566788888888888776
No 84
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=93.50 E-value=0.94 Score=43.07 Aligned_cols=123 Identities=20% Similarity=0.119 Sum_probs=76.4
Q ss_pred hccCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcc-cchHHHHHHHHHHHHHcCCe-EEEecC-CCCCCCCCCCCCC
Q 019395 61 SYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV-GGSSKVLDNAFDWAEKYGVK-VIVDLH-AAPGSQNGNEHSA 137 (341)
Q Consensus 61 ~~~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~-~~~l~~ld~~i~~a~~~gi~-vildlh-~~~g~~~~~~~~g 137 (341)
..++++.++.|+++|+|.|-|++. .+ ++.--..+. ....+.+.++++.+++.|+. |.+|+- +.||
T Consensus 104 ~~i~~e~l~~l~~~G~~rvslGvQ--S~-~~~~L~~l~R~~s~~~~~~a~~~l~~~g~~~v~~dli~GlPg--------- 171 (375)
T PRK05628 104 ESTSPEFFAALRAAGFTRVSLGMQ--SA-APHVLAVLDRTHTPGRAVAAAREARAAGFEHVNLDLIYGTPG--------- 171 (375)
T ss_pred CCCCHHHHHHHHHcCCCEEEEecc--cC-CHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEeccCCC---------
Confidence 347899999999999997777662 22 110000000 12467788899999999998 889874 4453
Q ss_pred CCCCccCCchhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCC-----------CCChHHHHHHHHHHHHHHHhcCCC
Q 019395 138 TRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP-----------GVALDTLKSYYKAGYDAVRKYTST 206 (341)
Q Consensus 138 ~~~~~~~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~-----------~~~~~~~~~~~~~~~~aIR~~~p~ 206 (341)
.+.+.+.+.++.+.+ ++ -..+..+.+.-||..+ ..+.+.....+..+.+.+++.+-.
T Consensus 172 ----------qt~~~~~~tl~~~~~-l~-~~~i~~y~l~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~G~~ 239 (375)
T PRK05628 172 ----------ESDDDWRASLDAALE-AG-VDHVSAYALIVEDGTALARRVRRGELPAPDDDVLADRYELADARLSAAGFD 239 (375)
T ss_pred ----------CCHHHHHHHHHHHHh-cC-CCEEEeeeeecCCCChHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHcCCC
Confidence 234555555665554 22 2345556677777642 123345667777888888877654
Q ss_pred c
Q 019395 207 A 207 (341)
Q Consensus 207 ~ 207 (341)
+
T Consensus 240 ~ 240 (375)
T PRK05628 240 W 240 (375)
T ss_pred e
Confidence 4
No 85
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=93.33 E-value=1.2 Score=42.41 Aligned_cols=123 Identities=18% Similarity=0.178 Sum_probs=77.4
Q ss_pred hccCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcc-cchHHHHHHHHHHHHHcCCe-EEEecC-CCCCCCCCCCCCC
Q 019395 61 SYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV-GGSSKVLDNAFDWAEKYGVK-VIVDLH-AAPGSQNGNEHSA 137 (341)
Q Consensus 61 ~~~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~-~~~l~~ld~~i~~a~~~gi~-vildlh-~~~g~~~~~~~~g 137 (341)
..++++.++.++++|+|.|-|.|. .+-+..- ..+. ....+.+.+.++.+++.|+. |-+||- +.||
T Consensus 99 ~~~~~~~l~~l~~~G~nrislGvQ--S~~~~~L-~~l~R~~~~~~~~~ai~~~~~~g~~~v~~Dli~GlPg--------- 166 (370)
T PRK06294 99 ENLSESYIRALALTGINRISIGVQ--TFDDPLL-KLLGRTHSSSKAIDAVQECSEHGFSNLSIDLIYGLPT--------- 166 (370)
T ss_pred CCCCHHHHHHHHHCCCCEEEEccc--cCCHHHH-HHcCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCC---------
Confidence 346899999999999996666552 2211100 0000 11356788899999999996 888864 3343
Q ss_pred CCCCccCCchhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCC-----------CCChHHHHHHHHHHHHHHHhcCCC
Q 019395 138 TRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP-----------GVALDTLKSYYKAGYDAVRKYTST 206 (341)
Q Consensus 138 ~~~~~~~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~-----------~~~~~~~~~~~~~~~~aIR~~~p~ 206 (341)
...+.+.+.++.+.+ + +-+.|..+.+.=||..+ ..+.+....+++.+.+.+.+.+=.
T Consensus 167 ----------qt~~~~~~~l~~~~~-l-~~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~ 234 (370)
T PRK06294 167 ----------QSLSDFIVDLHQAIT-L-PITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGFT 234 (370)
T ss_pred ----------CCHHHHHHHHHHHHc-c-CCCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCCC
Confidence 234455556666554 2 23466668888888741 123455677888888888877754
Q ss_pred c
Q 019395 207 A 207 (341)
Q Consensus 207 ~ 207 (341)
+
T Consensus 235 ~ 235 (370)
T PRK06294 235 R 235 (370)
T ss_pred e
Confidence 4
No 86
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=93.11 E-value=2 Score=40.06 Aligned_cols=135 Identities=16% Similarity=0.174 Sum_probs=80.3
Q ss_pred HHHHHHHHHCCCCEEEcCccc-ccccC---CC-----------------------CCCCcccchHHHHHHHHHHHHHcCC
Q 019395 65 DEDFKFLSSNGINAVRIPVGW-WIAND---PT-----------------------PPKPFVGGSSKVLDNAFDWAEKYGV 117 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~-~~~~~---~~-----------------------~~~~~~~~~l~~ld~~i~~a~~~gi 117 (341)
++-++.|+..++|.+-+.+.- |.+.- |. ..+.| ..+.++++|+.|+++||
T Consensus 20 k~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~Y---T~~di~eiv~yA~~rgI 96 (326)
T cd06564 20 KDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYY---TKEEFKELIAYAKDRGV 96 (326)
T ss_pred HHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCcc---cHHHHHHHHHHHHHcCC
Confidence 677888999999999987753 11211 10 01112 46899999999999999
Q ss_pred eEEEecCCCCCCC-----------CCCCCCCCCCCccCCc-hhHHHHHHHHHHHHHHHhCC-CCce-eEEEeecCCCCCC
Q 019395 118 KVIVDLHAAPGSQ-----------NGNEHSATRDGFQEWG-DSNVADTVAVIDFLAARYAN-RPSL-AAIELINEPLAPG 183 (341)
Q Consensus 118 ~vildlh~~~g~~-----------~~~~~~g~~~~~~~w~-~~~~~~~~~~~~~la~~y~~-~~~v-~~~el~NEP~~~~ 183 (341)
.||..+-. ||.. -.....+...+..... +...+-..++++++++.|.. .+.+ +|= -|.....
T Consensus 97 ~vIPEID~-PGH~~a~~~~~pel~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~E~~~~f~~~~~~~HiGg---DE~~~~~ 172 (326)
T cd06564 97 NIIPEIDS-PGHSLAFTKAMPELGLKNPFSKYDKDTLDISNPEAVKFVKALFDEYLDGFNPKSDTVHIGA---DEYAGDA 172 (326)
T ss_pred eEeccCCC-cHHHHHHHHhhHHhcCCCcccCCCcccccCCCHHHHHHHHHHHHHHHHhcCCCCCEEEecc---ccccccC
Confidence 99986643 2210 0000000001111112 56667777888888888873 2322 222 2322112
Q ss_pred CChHHHHHHHHHHHHHHHhcCCC
Q 019395 184 VALDTLKSYYKAGYDAVRKYTST 206 (341)
Q Consensus 184 ~~~~~~~~~~~~~~~aIR~~~p~ 206 (341)
...+.+..|.+++.+.|++.+.+
T Consensus 173 ~~~~~~~~f~~~~~~~v~~~gk~ 195 (326)
T cd06564 173 GYAEAFRAYVNDLAKYVKDKGKT 195 (326)
T ss_pred ccHHHHHHHHHHHHHHHHHcCCe
Confidence 34567889999999999988543
No 87
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=93.10 E-value=4.3 Score=37.41 Aligned_cols=134 Identities=13% Similarity=0.131 Sum_probs=79.3
Q ss_pred HHHHHHHHHCCCCEEEcCccc---ccccC---CC------------CCCCcccchHHHHHHHHHHHHHcCCeEEEecCCC
Q 019395 65 DEDFKFLSSNGINAVRIPVGW---WIAND---PT------------PPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA 126 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~---~~~~~---~~------------~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~ 126 (341)
++-++.|+..++|.+-+.+.- |.+.- |. +.+.| ..+.+.++++.|+++||.||..+-..
T Consensus 19 k~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~y---T~~di~elv~yA~~rgI~viPEiD~P 95 (303)
T cd02742 19 KRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFY---TYAQLKDIIEYAAARGIEVIPEIDMP 95 (303)
T ss_pred HHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeE---CHHHHHHHHHHHHHcCCEEEEeccch
Confidence 677888999999999998762 12211 10 11122 36899999999999999999876432
Q ss_pred CCCC------------CCCCCC--CCCCCccCCc-hhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCChHHHHH
Q 019395 127 PGSQ------------NGNEHS--ATRDGFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKS 191 (341)
Q Consensus 127 ~g~~------------~~~~~~--g~~~~~~~w~-~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~~~~~ 191 (341)
|.. .....+ +...+...-. ++..+-..++++++++.|.+.---+|= -|........+.+..
T Consensus 96 -GH~~a~~~~~p~l~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~l~~e~~~lf~~~~iHiGg---DE~~~~~~~~~l~~~ 171 (303)
T cd02742 96 -GHSTAFVKSFPKLLTECYAGLKLRDVFDPLDPTLPKGYDFLDDLFGEIAELFPDRYLHIGG---DEAHFKQDRKHLMSQ 171 (303)
T ss_pred -HHHHHHHHhCHHhccCccccCCCCCCCCccCCCCccHHHHHHHHHHHHHHhCCCCeEEecc---eecCCCCCHHHHHHH
Confidence 210 000000 0000111111 566777778888888888542211332 333221223456788
Q ss_pred HHHHHHHHHHhcCC
Q 019395 192 YYKAGYDAVRKYTS 205 (341)
Q Consensus 192 ~~~~~~~aIR~~~p 205 (341)
|.+++.+.+++.+.
T Consensus 172 f~~~~~~~v~~~g~ 185 (303)
T cd02742 172 FIQRVLDIVKKKGK 185 (303)
T ss_pred HHHHHHHHHHHcCC
Confidence 88999999998874
No 88
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=93.09 E-value=0.3 Score=48.81 Aligned_cols=59 Identities=20% Similarity=0.300 Sum_probs=39.5
Q ss_pred HHHHHHHHHCCCCEEEcCccccccc-----CCCCCCCccc--chHHHHHHHHHHHHHcCCeEEEec
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIAN-----DPTPPKPFVG--GSSKVLDNAFDWAEKYGVKVIVDL 123 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~-----~~~~~~~~~~--~~l~~ld~~i~~a~~~gi~vildl 123 (341)
.+-++.|+++|+|+|=|.=-+..-. ++......++ +..+.++++|+.|+++||+||+|+
T Consensus 31 ~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~ 96 (539)
T TIGR02456 31 TSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDL 96 (539)
T ss_pred HHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 4458999999999998842111100 0000001122 357999999999999999999997
No 89
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=92.86 E-value=1.4 Score=41.91 Aligned_cols=123 Identities=18% Similarity=0.199 Sum_probs=75.0
Q ss_pred hccCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcc-cchHHHHHHHHHHHHHcCCe-EEEecC-CCCCCCCCCCCCC
Q 019395 61 SYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV-GGSSKVLDNAFDWAEKYGVK-VIVDLH-AAPGSQNGNEHSA 137 (341)
Q Consensus 61 ~~~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~-~~~l~~ld~~i~~a~~~gi~-vildlh-~~~g~~~~~~~~g 137 (341)
..++++.++.++++|+|.|-|++ ..+-+..- .... ....+.+.++++.+++.|+. |-+|+- +.||
T Consensus 95 ~~~t~e~l~~l~~~G~~rvsiGv--qS~~d~~L-~~l~R~~~~~~~~~ai~~l~~~g~~~v~~dli~GlPg--------- 162 (374)
T PRK05799 95 GTFTEEKLKILKSMGVNRLSIGL--QAWQNSLL-KYLGRIHTFEEFLENYKLARKLGFNNINVDLMFGLPN--------- 162 (374)
T ss_pred CcCCHHHHHHHHHcCCCEEEEEC--ccCCHHHH-HHcCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCC---------
Confidence 34789999999999999555544 32211100 0000 12467788899999999996 667864 3343
Q ss_pred CCCCccCCchhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCC-----------CCChHHHHHHHHHHHHHHHhcCCC
Q 019395 138 TRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP-----------GVALDTLKSYYKAGYDAVRKYTST 206 (341)
Q Consensus 138 ~~~~~~~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~-----------~~~~~~~~~~~~~~~~aIR~~~p~ 206 (341)
.+.+.+.+.++.+.+. + -..+..|.+.-+|..+ ..+.+....+++.+.+.+.+.+=.
T Consensus 163 ----------qt~e~~~~~l~~~~~l-~-~~~is~y~l~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy~ 230 (374)
T PRK05799 163 ----------QTLEDWKETLEKVVEL-N-PEHISCYSLIIEEGTPFYNLYENGKLKLPDEEEEREMYHYTIEFLKEKGYH 230 (374)
T ss_pred ----------CCHHHHHHHHHHHHhc-C-CCEEEEeccEecCCCHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCc
Confidence 2345566666666542 2 2345556677788642 123455667777777888877654
Q ss_pred c
Q 019395 207 A 207 (341)
Q Consensus 207 ~ 207 (341)
+
T Consensus 231 ~ 231 (374)
T PRK05799 231 Q 231 (374)
T ss_pred E
Confidence 4
No 90
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=92.73 E-value=1.1 Score=43.39 Aligned_cols=122 Identities=22% Similarity=0.278 Sum_probs=74.1
Q ss_pred ccCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEE-EecC-CCCCCCCCCCCCCCC
Q 019395 62 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVI-VDLH-AAPGSQNGNEHSATR 139 (341)
Q Consensus 62 ~~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vi-ldlh-~~~g~~~~~~~~g~~ 139 (341)
.++++.++.|+++|+|.|-|.+. .+-+..-..--.....+.+.++++.+++.|+.+| +|+- +.|+
T Consensus 138 ~lt~e~l~~l~~~G~~rvslGvQ--S~~~~~L~~l~R~~~~~~~~~ai~~l~~~g~~~i~~dlI~GlP~----------- 204 (430)
T PRK08208 138 TTTAEKLALLAARGVNRLSIGVQ--SFHDSELHALHRPQKRADVHQALEWIRAAGFPILNIDLIYGIPG----------- 204 (430)
T ss_pred cCCHHHHHHHHHcCCCEEEEecc--cCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCC-----------
Confidence 46899999999999997777663 2211100000001246788899999999999854 7754 4443
Q ss_pred CCccCCchhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCC-----CCChHHHHHHHHHHHHHHHhcCCC
Q 019395 140 DGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP-----GVALDTLKSYYKAGYDAVRKYTST 206 (341)
Q Consensus 140 ~~~~~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~-----~~~~~~~~~~~~~~~~aIR~~~p~ 206 (341)
.+.+.+.+.++.+.+ . +-+.+-.+.+.=||..+ ....+....+++.+.+.+.+.+=.
T Consensus 205 --------qt~e~~~~~l~~~~~-l-~~~~is~y~L~~~~~T~l~~~~~~~~~~~~~m~~~~~~~L~~~Gy~ 266 (430)
T PRK08208 205 --------QTHASWMESLDQALV-Y-RPEELFLYPLYVRPLTGLGRRARAWDDQRLSLYRLARDLLLEAGYT 266 (430)
T ss_pred --------CCHHHHHHHHHHHHh-C-CCCEEEEccccccCCCccchhcCCCHHHHHHHHHHHHHHHHHcCCe
Confidence 233455555555543 2 22456556677777642 123356667777777777776643
No 91
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=92.59 E-value=1.9 Score=40.63 Aligned_cols=124 Identities=16% Similarity=0.146 Sum_probs=76.5
Q ss_pred hccCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcc-cchHHHHHHHHHHHHHcCCe-EEEecC-CCCCCCCCCCCCC
Q 019395 61 SYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV-GGSSKVLDNAFDWAEKYGVK-VIVDLH-AAPGSQNGNEHSA 137 (341)
Q Consensus 61 ~~~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~-~~~l~~ld~~i~~a~~~gi~-vildlh-~~~g~~~~~~~~g 137 (341)
..++++.++.|++.|+|.|=|++ ..+-+..- ..+. ....+.+.++++.+++.|+. |-+|+- +.||
T Consensus 99 ~~lt~e~l~~lk~~G~nrisiGv--QS~~d~vL-~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dlI~GlPg--------- 166 (353)
T PRK05904 99 ELITQSQINLLKKNKVNRISLGV--QSMNNNIL-KQLNRTHTIQDSKEAINLLHKNGIYNISCDFLYCLPI--------- 166 (353)
T ss_pred CcCCHHHHHHHHHcCCCEEEEec--ccCCHHHH-HHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEeecCCC---------
Confidence 45689999999999999666555 22211100 0000 12467788999999999987 778864 4453
Q ss_pred CCCCccCCchhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCC------CCChHHHHHHHHHHHHHHHhcCCCce
Q 019395 138 TRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP------GVALDTLKSYYKAGYDAVRKYTSTAY 208 (341)
Q Consensus 138 ~~~~~~~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~------~~~~~~~~~~~~~~~~aIR~~~p~~~ 208 (341)
.+.+.+.+.++.+.+ .+ -+.+..+.+.=||..+ ..+.+.-.+.++.+.+.+++.+-.+.
T Consensus 167 ----------qt~e~~~~tl~~~~~-l~-p~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~y 231 (353)
T PRK05904 167 ----------LKLKDLDEVFNFILK-HK-INHISFYSLEIKEGSILKKYHYTIDEDKEAEQLNYIKAKFNKLNYKRY 231 (353)
T ss_pred ----------CCHHHHHHHHHHHHh-cC-CCEEEEEeeEecCCChHhhcCCCCChHHHHHHHHHHHHHHHHcCCcEE
Confidence 234455555555543 22 2355556677677631 12445566777888888888776554
No 92
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=92.58 E-value=0.35 Score=47.61 Aligned_cols=59 Identities=27% Similarity=0.257 Sum_probs=40.0
Q ss_pred HHHHHHHHHCCCCEEEcCcccccc-------cCCCCCC---------Cccc--chHHHHHHHHHHHHHcCCeEEEec
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIA-------NDPTPPK---------PFVG--GSSKVLDNAFDWAEKYGVKVIVDL 123 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~-------~~~~~~~---------~~~~--~~l~~ld~~i~~a~~~gi~vildl 123 (341)
.+-++.|+++|+++|=|+=.+... -++.... ..++ +..+.|+++|+.|+++||+||+|+
T Consensus 25 ~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi~D~ 101 (479)
T PRK09441 25 AERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVYADV 101 (479)
T ss_pred HHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 445899999999999885322111 0011000 1122 368899999999999999999997
No 93
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=92.46 E-value=1.5 Score=41.77 Aligned_cols=123 Identities=22% Similarity=0.233 Sum_probs=74.7
Q ss_pred hccCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCc-ccchHHHHHHHHHHHHHcCCe-EEEecC-CCCCCCCCCCCCC
Q 019395 61 SYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF-VGGSSKVLDNAFDWAEKYGVK-VIVDLH-AAPGSQNGNEHSA 137 (341)
Q Consensus 61 ~~~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~-~~~~l~~ld~~i~~a~~~gi~-vildlh-~~~g~~~~~~~~g 137 (341)
..++++.++.|+++|+|.|-|++. .+ ++.--..+ .....+.+.+.++.+++.|+. |-+|+- +.||
T Consensus 96 ~~l~~e~l~~l~~~G~~rvsiGvq--S~-~~~~l~~l~r~~~~~~~~~~i~~l~~~g~~~v~~dli~GlPg--------- 163 (377)
T PRK08599 96 GDLTKEKLQVLKDSGVNRISLGVQ--TF-NDELLKKIGRTHNEEDVYEAIANAKKAGFDNISIDLIYALPG--------- 163 (377)
T ss_pred CCCCHHHHHHHHHcCCCEEEEecc--cC-CHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEeeecCCCC---------
Confidence 346899999999999996666552 21 11000000 012467888999999999997 567764 4443
Q ss_pred CCCCccCCchhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCC-----------CCChHHHHHHHHHHHHHHHhcCCC
Q 019395 138 TRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP-----------GVALDTLKSYYKAGYDAVRKYTST 206 (341)
Q Consensus 138 ~~~~~~~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~-----------~~~~~~~~~~~~~~~~aIR~~~p~ 206 (341)
.+.+.+.+.++.+.+ + +-+.+..+.+.-+|..+ ..+.+.....++.+.+.+++.+=.
T Consensus 164 ----------qt~~~~~~~l~~~~~-l-~~~~i~~y~l~~~pgT~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy~ 231 (377)
T PRK08599 164 ----------QTIEDFKESLAKALA-L-DIPHYSAYSLILEPKTVFYNLMRKGKLRLPGEDLEAEMYEYLMDEMEAHGFH 231 (377)
T ss_pred ----------CCHHHHHHHHHHHHc-c-CCCEEeeeceeecCCChhHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCCc
Confidence 223445555555433 2 23356567777788642 123345567778888888877644
Q ss_pred c
Q 019395 207 A 207 (341)
Q Consensus 207 ~ 207 (341)
+
T Consensus 232 ~ 232 (377)
T PRK08599 232 Q 232 (377)
T ss_pred E
Confidence 3
No 94
>PLN00196 alpha-amylase; Provisional
Probab=92.34 E-value=0.47 Score=45.92 Aligned_cols=58 Identities=19% Similarity=0.200 Sum_probs=41.0
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCC-----CCccc---chHHHHHHHHHHHHHcCCeEEEec
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPP-----KPFVG---GSSKVLDNAFDWAEKYGVKVIVDL 123 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~-----~~~~~---~~l~~ld~~i~~a~~~gi~vildl 123 (341)
.+.+..|+++|+++|=||=.+... ..... ..+++ +..+.|+++|+.|+++||+||+|+
T Consensus 47 ~~kldyL~~LGvtaIWL~P~~~s~-s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 47 MGKVDDIAAAGITHVWLPPPSHSV-SEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCC-CCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 677899999999999997332111 11010 01111 357899999999999999999997
No 95
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=92.22 E-value=2.3 Score=40.28 Aligned_cols=226 Identities=14% Similarity=0.142 Sum_probs=111.6
Q ss_pred HHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEE-ecCCCCCCCCCCCCCCCCCCccCCc----
Q 019395 72 SSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIV-DLHAAPGSQNGNEHSATRDGFQEWG---- 146 (341)
Q Consensus 72 ~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vil-dlh~~~g~~~~~~~~g~~~~~~~w~---- 146 (341)
++.|+|-||-..-|-..+. .. -| -+.++|++++.....|+-.|. +||-- ..++ ..+ .|.
T Consensus 15 ~Ei~v~yi~~~~v~h~~~q-~~--~~---~~t~~d~i~d~~~~~~~~~ie~~l~~~-~l~~-~~~--------~wq~n~~ 78 (428)
T COG3664 15 DEIQVNYIRRHGVWHVNAQ-KL--FY---PFTYIDEIIDTLLDLGLDLIELFLIWN-NLNT-KEH--------QWQLNVD 78 (428)
T ss_pred hhhceeeehhcceeeeeec-cc--cC---ChHHHHHHHHHHHHhccHHHHHhhccc-chhh-hhh--------hcccccC
Confidence 5678888876543321111 11 12 267899999999999954333 33311 1111 111 122
Q ss_pred --hhHHHHHHHHHHHHHHHhCCC-CceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCChhhh
Q 019395 147 --DSNVADTVAVIDFLAARYANR-PSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRLGPADHKEL 223 (341)
Q Consensus 147 --~~~~~~~~~~~~~la~~y~~~-~~v~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~v~~~~~~~~~~~~~~ 223 (341)
....+...++++.+..+|+-. ...+.++..|||+.. .....+.+.+..++ |+..|...| ++.|.......+
T Consensus 79 ~~~~~~dl~~~fl~h~~~~vg~e~v~kw~f~~~~~pn~~-ad~~eyfk~y~~~a---~~~~p~i~v--g~~w~~e~l~~~ 152 (428)
T COG3664 79 DPKSVFDLIAAFLKHVIRRVGVEFVRKWPFYSPNEPNLL-ADKQEYFKLYDATA---RQRAPSIQV--GGSWNTERLHEF 152 (428)
T ss_pred CcHhHHHHHHHHHHHHHHHhChhheeecceeecCCCCcc-cchHHHHHHHHhhh---hccCcceee--ccccCcHHHhhh
Confidence 135678888999999999743 357889999999974 33344444444443 466674433 333322112333
Q ss_pred hhccCCCCcEEEEeeecCCCCccccCccchhhh---HHHHhhhhhhhhhhhccC--CCceEEEeecCCCCCCCCCH-HHH
Q 019395 224 LSFASGLSRVVIDVHYYNLFSNNFNGLNVQQNI---DYVNNQRASDLGAVTTSN--GPLTFVGEWTCEWNVKDASK-QDY 297 (341)
Q Consensus 224 ~~~~~~~~~~v~~~H~Y~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~pv~vGE~g~~~~~~~~~~-~~~ 297 (341)
.+. .+.-..+..|.|..-...+...+.+... ...+-...+.+.++.+.. +.|.++.||.....+..... +.+
T Consensus 153 ~k~--~d~idfvt~~a~~~~av~~~~~~~~~~~l~~~~~~l~~~r~~~d~i~~~~~~~pl~~~~wntlt~~~~~~n~sy~ 230 (428)
T COG3664 153 LKK--ADEIDFVTELANSVDAVDFSTPGAEEVKLSELKRTLEDLRGLKDLIQHHSLGLPLLLTNWNTLTGPREPTNGSYV 230 (428)
T ss_pred hhc--cCcccceeecccccccccccCCCchhhhhhhhhhhhhHHHHHHHHHHhccCCCcceeecccccCCCccccCceee
Confidence 332 3333456777775422222211111100 001101111122222222 45799999987553322111 122
Q ss_pred H-HHHHHHHHHHccCCCcEEEeccc
Q 019395 298 Q-RFANAQLDVYGRATFGWAYWAHK 321 (341)
Q Consensus 298 ~-~~~~~~~~~~~~~~~Gw~~W~~k 321 (341)
+ .++..++.-....-.+..||++.
T Consensus 231 raa~i~~~Lr~~g~~v~a~~yW~~s 255 (428)
T COG3664 231 RAAYIMRLLREAGSPVDAFGYWTNS 255 (428)
T ss_pred hHHHHHHHHHhcCChhhhhhhhhcc
Confidence 2 44444443333344566688775
No 96
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=91.92 E-value=1.5 Score=42.97 Aligned_cols=121 Identities=17% Similarity=0.129 Sum_probs=73.5
Q ss_pred hccCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcc-cchHHHHHHHHHHHHHcCCe-EEEecC-CCCCCCCCCCCCC
Q 019395 61 SYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV-GGSSKVLDNAFDWAEKYGVK-VIVDLH-AAPGSQNGNEHSA 137 (341)
Q Consensus 61 ~~~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~-~~~l~~ld~~i~~a~~~gi~-vildlh-~~~g~~~~~~~~g 137 (341)
..++++.++.|+++|+|.|-|.+ ..+ ++.--..+. ....+.+.++++.+++.|+. |-+|+- +.|+
T Consensus 148 ~~lt~e~l~~L~~~G~~rvsiGv--QS~-~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlPg--------- 215 (453)
T PRK13347 148 RTVTAEMLQALAALGFNRASFGV--QDF-DPQVQKAINRIQPEEMVARAVELLRAAGFESINFDLIYGLPH--------- 215 (453)
T ss_pred ccCCHHHHHHHHHcCCCEEEECC--CCC-CHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCCC---------
Confidence 34789999999999999666655 222 110000000 12467888999999999996 778864 4453
Q ss_pred CCCCccCCchhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCC----------CCChHHHHHHHHHHHHHHHhcCC
Q 019395 138 TRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP----------GVALDTLKSYYKAGYDAVRKYTS 205 (341)
Q Consensus 138 ~~~~~~~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~----------~~~~~~~~~~~~~~~~aIR~~~p 205 (341)
.+.+.+.+.++.+.+ + +-..|..+.+...|... -.+.+.....++.+.+.+.+.+=
T Consensus 216 ----------qt~e~~~~tl~~~~~-l-~p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy 281 (453)
T PRK13347 216 ----------QTVESFRETLDKVIA-L-SPDRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLAAGY 281 (453)
T ss_pred ----------CCHHHHHHHHHHHHh-c-CCCEEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHCCC
Confidence 234556666666654 2 22244445555555421 12345666778888888887764
No 97
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=91.87 E-value=2.6 Score=41.18 Aligned_cols=122 Identities=15% Similarity=0.062 Sum_probs=77.6
Q ss_pred ccCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCc-ccchHHHHHHHHHHHHHcC-CeEEEecC-CCCCCCCCCCCCCC
Q 019395 62 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF-VGGSSKVLDNAFDWAEKYG-VKVIVDLH-AAPGSQNGNEHSAT 138 (341)
Q Consensus 62 ~~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~-~~~~l~~ld~~i~~a~~~g-i~vildlh-~~~g~~~~~~~~g~ 138 (341)
.++++.++.++++|+|.|-|.|- .+-+..- ... .....+.+.+.++.+++.| +.|.+||- +.||
T Consensus 160 ~~t~e~l~~l~~aGvnRiSiGVQ--Sf~d~vL-k~lgR~~~~~~~~~~i~~l~~~g~~~v~~DlI~GlPg---------- 226 (449)
T PRK09058 160 GFDDEKADAALDAGANRFSIGVQ--SFNTQVR-RRAGRKDDREEVLARLEELVARDRAAVVCDLIFGLPG---------- 226 (449)
T ss_pred cCCHHHHHHHHHcCCCEEEecCC--cCCHHHH-HHhCCCCCHHHHHHHHHHHHhCCCCcEEEEEEeeCCC----------
Confidence 46899999999999997766652 2211000 000 0113567778999999999 78999985 4453
Q ss_pred CCCccCCchhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCC-----------CC-ChHHHHHHHHHHHHHHHhcCCC
Q 019395 139 RDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP-----------GV-ALDTLKSYYKAGYDAVRKYTST 206 (341)
Q Consensus 139 ~~~~~~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~-----------~~-~~~~~~~~~~~~~~aIR~~~p~ 206 (341)
.+.+.+.+-++.+.+ + +-..|..|.|.-||..+ .. +.+....+++.+.+.+++.+=.
T Consensus 227 ---------qT~e~~~~~l~~~~~-l-~~~~is~y~L~~~pgT~l~~~~~~g~l~~~~~~~~~~~my~~~~~~L~~~Gy~ 295 (449)
T PRK09058 227 ---------QTPEIWQQDLAIVRD-L-GLDGVDLYALNLLPGTPLAKAVEKGKLPPPATPAERADMYAYGVEFLAKAGWR 295 (449)
T ss_pred ---------CCHHHHHHHHHHHHh-c-CCCEEEEeccccCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHCCCe
Confidence 223444444555443 2 22456668888888741 11 4567778899999999888765
Q ss_pred c
Q 019395 207 A 207 (341)
Q Consensus 207 ~ 207 (341)
+
T Consensus 296 ~ 296 (449)
T PRK09058 296 Q 296 (449)
T ss_pred E
Confidence 4
No 98
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=91.77 E-value=5.4 Score=37.24 Aligned_cols=131 Identities=14% Similarity=0.159 Sum_probs=77.6
Q ss_pred HHHHHHHHHCCCCEEEcCccc---ccccCCC-C---------------CCCcccchHHHHHHHHHHHHHcCCeEEEecCC
Q 019395 65 DEDFKFLSSNGINAVRIPVGW---WIANDPT-P---------------PKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 125 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~---~~~~~~~-~---------------~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~ 125 (341)
++-++.|+..++|.+-+.+.- |.+.-+. | ++.| ..+.++++|+.|+++||.||..+-.
T Consensus 21 k~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~Y---T~~di~elv~yA~~rgI~vIPEiD~ 97 (329)
T cd06568 21 KRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYY---TQEDYKDIVAYAAERHITVVPEIDM 97 (329)
T ss_pred HHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcC---CHHHHHHHHHHHHHcCCEEEEecCC
Confidence 677888999999999998742 2221110 0 0112 3688999999999999999987642
Q ss_pred CCCCCC-------CCCCCCC--------C--CCccCCc-hhHHHHHHHHHHHHHHHhCCCCce-eEEEeecCCCCCCCCh
Q 019395 126 APGSQN-------GNEHSAT--------R--DGFQEWG-DSNVADTVAVIDFLAARYANRPSL-AAIELINEPLAPGVAL 186 (341)
Q Consensus 126 ~~g~~~-------~~~~~g~--------~--~~~~~w~-~~~~~~~~~~~~~la~~y~~~~~v-~~~el~NEP~~~~~~~ 186 (341)
. |... .....+. . .+...-. ++..+-..++++++++-|.+ +.+ +| .-|... ...
T Consensus 98 P-GH~~a~~~~~p~l~~~~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~v~~E~~~~f~~-~~iHiG---gDE~~~--~~~ 170 (329)
T cd06568 98 P-GHTNAALAAYPELNCDGKAKPLYTGIEVGFSSLDVDKPTTYEFVDDVFRELAALTPG-PYIHIG---GDEAHS--TPH 170 (329)
T ss_pred c-HHHHHHHHhChhhccCCCCCccccccCCCCcccCCCCHHHHHHHHHHHHHHHHhCCC-CeEEEe---cccCCC--Cch
Confidence 1 1100 0000000 0 0001111 55666666777888777754 322 22 245442 344
Q ss_pred HHHHHHHHHHHHHHHhcCC
Q 019395 187 DTLKSYYKAGYDAVRKYTS 205 (341)
Q Consensus 187 ~~~~~~~~~~~~aIR~~~p 205 (341)
+.+..|.+++.+.+++.+.
T Consensus 171 ~~~~~f~~~~~~~v~~~Gk 189 (329)
T cd06568 171 DDYAYFVNRVRAIVAKYGK 189 (329)
T ss_pred HHHHHHHHHHHHHHHHCCC
Confidence 6788899999999998764
No 99
>PRK09505 malS alpha-amylase; Reviewed
Probab=91.73 E-value=0.56 Score=48.07 Aligned_cols=59 Identities=20% Similarity=0.283 Sum_probs=39.7
Q ss_pred HHHHHHHHHCCCCEEEcCccccccc-------------------CCCCCCCccc--chHHHHHHHHHHHHHcCCeEEEec
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIAN-------------------DPTPPKPFVG--GSSKVLDNAFDWAEKYGVKVIVDL 123 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~-------------------~~~~~~~~~~--~~l~~ld~~i~~a~~~gi~vildl 123 (341)
.+-++.|+++|+|+|=|+=.+.... .+.....+++ +..+.++++|+.|+++||+||+|+
T Consensus 233 ~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD~ 312 (683)
T PRK09505 233 TEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFDV 312 (683)
T ss_pred HHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 4458999999999998842111100 0000001122 368899999999999999999997
No 100
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=91.67 E-value=8.8 Score=35.30 Aligned_cols=136 Identities=11% Similarity=0.047 Sum_probs=79.6
Q ss_pred HHHHHHHHHCCCCEEEcCccccccc---CCC---CCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCCCCC------C
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIAN---DPT---PPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQN------G 132 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~---~~~---~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~------~ 132 (341)
++-++.|+..|+|.+-|.+.- .+. .|. ..+.| .-+.++++++.|+++||.||..+-. ||... .
T Consensus 20 k~~id~ma~~k~N~l~lhl~D-~f~~~~~p~~~~~~~~y---T~~ei~ei~~yA~~~gI~vIPeid~-pGH~~~~l~~~~ 94 (301)
T cd06565 20 KKLLRLLALLGANGLLLYYED-TFPYEGEPEVGRMRGAY---TKEEIREIDDYAAELGIEVIPLIQT-LGHLEFILKHPE 94 (301)
T ss_pred HHHHHHHHHcCCCEEEEEEec-ceecCCCcccccCCCCc---CHHHHHHHHHHHHHcCCEEEecCCC-HHHHHHHHhCcc
Confidence 678889999999999987642 110 111 01233 3689999999999999999997654 22100 0
Q ss_pred CCCC---CCCCCccCCc-hhHHHHHHHHHHHHHHHhCCCCce-eEEEeecCC-CC-------CCCChHHHHHHHHHHHHH
Q 019395 133 NEHS---ATRDGFQEWG-DSNVADTVAVIDFLAARYANRPSL-AAIELINEP-LA-------PGVALDTLKSYYKAGYDA 199 (341)
Q Consensus 133 ~~~~---g~~~~~~~w~-~~~~~~~~~~~~~la~~y~~~~~v-~~~el~NEP-~~-------~~~~~~~~~~~~~~~~~a 199 (341)
+... ....+...-. ++..+-..++++++++.|.. +.+ +|-|=..+. .. .....+.+..+..++.+.
T Consensus 95 ~~~l~~~~~~~~~l~~~~~~t~~fi~~li~ev~~~f~s-~~~HIG~DE~~~~g~~~~~~~~~~~~~~~l~~~~~~~v~~~ 173 (301)
T cd06565 95 FRHLREVDDPPQTLCPGEPKTYDFIEEMIRQVLELHPS-KYIHIGMDEAYDLGRGRSLRKHGNLGRGELYLEHLKKVLKI 173 (301)
T ss_pred cccccccCCCCCccCCCChhHHHHHHHHHHHHHHhCCC-CeEEECCCcccccCCCHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 0000 0000000011 56677777888888888863 222 222211111 11 012235678999999999
Q ss_pred HHhcCCC
Q 019395 200 VRKYTST 206 (341)
Q Consensus 200 IR~~~p~ 206 (341)
+++.+++
T Consensus 174 v~~~g~~ 180 (301)
T cd06565 174 IKKRGPK 180 (301)
T ss_pred HHHcCCE
Confidence 9999983
No 101
>PRK05660 HemN family oxidoreductase; Provisional
Probab=91.56 E-value=2.1 Score=40.77 Aligned_cols=123 Identities=18% Similarity=0.172 Sum_probs=75.0
Q ss_pred hccCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCc-ccchHHHHHHHHHHHHHcCCeE-EEecCC-CCCCCCCCCCCC
Q 019395 61 SYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF-VGGSSKVLDNAFDWAEKYGVKV-IVDLHA-APGSQNGNEHSA 137 (341)
Q Consensus 61 ~~~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~-~~~~l~~ld~~i~~a~~~gi~v-ildlh~-~~g~~~~~~~~g 137 (341)
..++++.++.|+++|+|.|-|.| ..+ ++.--... .....+.+.+.++.+++.|+.. -+|+-. .|+
T Consensus 103 ~~l~~e~l~~Lk~~Gv~risiGv--qS~-~~~~L~~l~r~~~~~~~~~ai~~~~~~G~~~v~~dli~Glpg--------- 170 (378)
T PRK05660 103 GTVEADRFVGYQRAGVNRISIGV--QSF-SEEKLKRLGRIHGPDEAKRAAKLAQGLGLRSFNLDLMHGLPD--------- 170 (378)
T ss_pred CcCCHHHHHHHHHcCCCEEEecc--CcC-CHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCC---------
Confidence 44689999999999999665554 222 11000000 0124677888999999999975 477753 342
Q ss_pred CCCCccCCchhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCC------C-CChHHHHHHHHHHHHHHHhcCCCc
Q 019395 138 TRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP------G-VALDTLKSYYKAGYDAVRKYTSTA 207 (341)
Q Consensus 138 ~~~~~~~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~------~-~~~~~~~~~~~~~~~aIR~~~p~~ 207 (341)
.+.+.+.+.++.+.+ + +-+.+..+.+.=||..+ . .+.+.....++.+.+.+.+.+=.+
T Consensus 171 ----------qt~~~~~~~l~~~~~-l-~p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~ 235 (378)
T PRK05660 171 ----------QSLEEALDDLRQAIA-L-NPPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGYQQ 235 (378)
T ss_pred ----------CCHHHHHHHHHHHHh-c-CCCeEEeeccEeccCCcccccCCCCcCHHHHHHHHHHHHHHHHHcCCcE
Confidence 234555566666554 2 23456557777777531 1 123455677788888888876544
No 102
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=91.53 E-value=2.7 Score=39.66 Aligned_cols=121 Identities=20% Similarity=0.130 Sum_probs=73.1
Q ss_pred hccCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcc-cchHHHHHHHHHHHHHcCCe-EEEecCC-CCCCCCCCCCCC
Q 019395 61 SYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV-GGSSKVLDNAFDWAEKYGVK-VIVDLHA-APGSQNGNEHSA 137 (341)
Q Consensus 61 ~~~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~-~~~l~~ld~~i~~a~~~gi~-vildlh~-~~g~~~~~~~~g 137 (341)
..++++.++.|+++|+|.|-|.+. .+ ++.--..+. ....+.+.++++.+++.|+. |-+|+-. .|+
T Consensus 96 ~~lt~e~l~~l~~~Gv~risiGvq--S~-~~~~l~~lgR~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPg--------- 163 (360)
T TIGR00539 96 ELITAEWCKGLKGAGINRLSLGVQ--SF-RDDKLLFLGRQHSAKNIAPAIETALKSGIENISLDLMYGLPL--------- 163 (360)
T ss_pred CCCCHHHHHHHHHcCCCEEEEecc--cC-ChHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCC---------
Confidence 347899999999999996666552 22 110000010 12477888999999999996 6788654 342
Q ss_pred CCCCccCCchhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCC-------CCChHHHHHHHHHHHHHHHhcCC
Q 019395 138 TRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP-------GVALDTLKSYYKAGYDAVRKYTS 205 (341)
Q Consensus 138 ~~~~~~~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~-------~~~~~~~~~~~~~~~~aIR~~~p 205 (341)
.+.+.+.+.++.+.+ + +-+.+..+.+.=||..+ ..+.+....++..+.+.+.+.+=
T Consensus 164 ----------qt~~~~~~~l~~~~~-l-~~~~is~y~l~~~~gT~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy 226 (360)
T TIGR00539 164 ----------QTLNSLKEELKLAKE-L-PINHLSAYALSVEPNTNFEKNAKKLPDDDSCAHFDEVVREILEGFGF 226 (360)
T ss_pred ----------CCHHHHHHHHHHHHc-c-CCCEEEeecceEcCCChhhhhhhcCcCHHHHHHHHHHHHHHHHHcCC
Confidence 234455555555554 2 22345556677677642 12334566777777777776553
No 103
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=91.36 E-value=2.4 Score=40.56 Aligned_cols=124 Identities=18% Similarity=0.085 Sum_probs=77.0
Q ss_pred hccCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecC-CCCCCCCCCCCCCCC
Q 019395 61 SYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH-AAPGSQNGNEHSATR 139 (341)
Q Consensus 61 ~~~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh-~~~g~~~~~~~~g~~ 139 (341)
..++++.++.|+++|+|-|-|.| ..+-+..-...-.....+.+.++++.+++.+..|-+||- +.||
T Consensus 107 ~~~~~e~l~~l~~~GvnRiSiGv--QS~~d~~L~~lgR~h~~~~~~~ai~~~~~~~~~v~~DlI~GlPg----------- 173 (390)
T PRK06582 107 TSFETEKFKAFKLAGINRVSIGV--QSLKEDDLKKLGRTHDCMQAIKTIEAANTIFPRVSFDLIYARSG----------- 173 (390)
T ss_pred CcCCHHHHHHHHHCCCCEEEEEC--CcCCHHHHHHcCCCCCHHHHHHHHHHHHHhCCcEEEEeecCCCC-----------
Confidence 34789999999999999555544 222111000000012356677788888888888999975 4443
Q ss_pred CCccCCchhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCC-----------CCChHHHHHHHHHHHHHHHhcCCCc
Q 019395 140 DGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP-----------GVALDTLKSYYKAGYDAVRKYTSTA 207 (341)
Q Consensus 140 ~~~~~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~-----------~~~~~~~~~~~~~~~~aIR~~~p~~ 207 (341)
.+.+.+.+-++.+++ + +-+.|..+.|.=||..+ ..+.+.....++.+.+.+++.+=.+
T Consensus 174 --------qt~e~~~~~l~~~~~-l-~p~his~y~L~i~~gT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ 242 (390)
T PRK06582 174 --------QTLKDWQEELKQAMQ-L-ATSHISLYQLTIEKGTPFYKLFKEGNLILPHSDAAAEMYEWTNHYLESKKYFR 242 (390)
T ss_pred --------CCHHHHHHHHHHHHh-c-CCCEEEEecCEEccCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCce
Confidence 223455555555554 2 33567778888888641 1234566788888888888877544
No 104
>PLN02784 alpha-amylase
Probab=91.33 E-value=0.73 Score=47.88 Aligned_cols=58 Identities=26% Similarity=0.232 Sum_probs=41.6
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCc-----cc--chHHHHHHHHHHHHHcCCeEEEec
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF-----VG--GSSKVLDNAFDWAEKYGVKVIVDL 123 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~-----~~--~~l~~ld~~i~~a~~~gi~vildl 123 (341)
.+.++.|+++||++|=||=..... .+....++ ++ +..+.|+.+|+.|+++||+||+|+
T Consensus 524 ~ekldyL~~LG~taIWLpP~~~s~-s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 524 GEKAAELSSLGFTVVWLPPPTESV-SPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCC-CCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 777999999999999996432111 11111111 11 357899999999999999999997
No 105
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=91.27 E-value=2.4 Score=40.43 Aligned_cols=122 Identities=20% Similarity=0.113 Sum_probs=75.2
Q ss_pred hccCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCc-ccchHHHHHHHHHHHHHcCCeEEEecC-CCCCCCCCCCCCCC
Q 019395 61 SYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF-VGGSSKVLDNAFDWAEKYGVKVIVDLH-AAPGSQNGNEHSAT 138 (341)
Q Consensus 61 ~~~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~-~~~~l~~ld~~i~~a~~~gi~vildlh-~~~g~~~~~~~~g~ 138 (341)
..++++.++.|+++|+|.|-|.| ..+-+..- ... .....+.+.++++.+++.++.|-+||- +.||
T Consensus 100 ~~i~~e~L~~l~~~GvnrislGv--QS~~d~vL-~~l~R~~~~~~~~~ai~~~~~~~~~v~~dli~GlPg---------- 166 (380)
T PRK09057 100 TSVEAGRFRGYRAAGVNRVSLGV--QALNDADL-RFLGRLHSVAEALAAIDLAREIFPRVSFDLIYARPG---------- 166 (380)
T ss_pred CcCCHHHHHHHHHcCCCEEEEec--ccCCHHHH-HHcCCCCCHHHHHHHHHHHHHhCccEEEEeecCCCC----------
Confidence 34678999999999999666655 22211100 000 011356777888999988999999985 3343
Q ss_pred CCCccCCchhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCC-----------CCChHHHHHHHHHHHHHHHhcCCC
Q 019395 139 RDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP-----------GVALDTLKSYYKAGYDAVRKYTST 206 (341)
Q Consensus 139 ~~~~~~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~-----------~~~~~~~~~~~~~~~~aIR~~~p~ 206 (341)
...+.+.+-++.+.+ + +-+.|..+.+.-||..+ ..+.+.....++.+.+.+.+.+-.
T Consensus 167 ---------qt~~~~~~~l~~~~~-l-~p~~is~y~L~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~G~~ 234 (380)
T PRK09057 167 ---------QTLAAWRAELKEALS-L-AADHLSLYQLTIEEGTAFYGLHAAGKLILPDEDLAADLYELTQEITAAAGLP 234 (380)
T ss_pred ---------CCHHHHHHHHHHHHh-c-CCCeEEeecceecCCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCc
Confidence 223344444555553 2 33467778888888641 123455667788888888876643
No 106
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=90.90 E-value=2.1 Score=41.86 Aligned_cols=120 Identities=13% Similarity=0.079 Sum_probs=73.5
Q ss_pred ccCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcc-cchHHHHHHHHHHHHHcCC-eEEEecC-CCCCCCCCCCCCCC
Q 019395 62 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV-GGSSKVLDNAFDWAEKYGV-KVIVDLH-AAPGSQNGNEHSAT 138 (341)
Q Consensus 62 ~~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~-~~~l~~ld~~i~~a~~~gi-~vildlh-~~~g~~~~~~~~g~ 138 (341)
-++++.++.|+++|+|.|-|++. .+ ++.--..+. ....+.+.+.++.+++.|+ .|-+|+- +.||
T Consensus 148 ~lt~e~l~~l~~aG~~risiGvq--S~-~~~~L~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPg---------- 214 (453)
T PRK09249 148 ELDLEMLDALRELGFNRLSLGVQ--DF-DPEVQKAVNRIQPFEFTFALVEAARELGFTSINIDLIYGLPK---------- 214 (453)
T ss_pred cCCHHHHHHHHHcCCCEEEECCC--CC-CHHHHHHhCCCCCHHHHHHHHHHHHHcCCCcEEEEEEccCCC----------
Confidence 46899999999999997777663 12 110000000 1246788899999999999 7888875 3343
Q ss_pred CCCccCCchhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCC----------CCChHHHHHHHHHHHHHHHhcCC
Q 019395 139 RDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP----------GVALDTLKSYYKAGYDAVRKYTS 205 (341)
Q Consensus 139 ~~~~~~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~----------~~~~~~~~~~~~~~~~aIR~~~p 205 (341)
.+.+.+.+.++.+.+- +-..+..+.+.+.|... -.+.+....++..+.+.+.+.+=
T Consensus 215 ---------qt~e~~~~~l~~~~~l--~~~~i~~y~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy 280 (453)
T PRK09249 215 ---------QTPESFARTLEKVLEL--RPDRLAVFNYAHVPWLFKAQRKIDEADLPSPEEKLAILQQTIETLTEAGY 280 (453)
T ss_pred ---------CCHHHHHHHHHHHHhc--CCCEEEEccCccchhhhhHhcCCCcccCCCHHHHHHHHHHHHHHHHHCCC
Confidence 2344555555555541 22344445555555420 12445667778888888877764
No 107
>PLN03244 alpha-amylase; Provisional
Probab=90.80 E-value=4.8 Score=41.70 Aligned_cols=111 Identities=14% Similarity=0.204 Sum_probs=64.2
Q ss_pred hHHHHHHHHHHHHHcCCeEEEecC---CCCCCC---CCCC-------CCCCCCCccCCc--------hhHHHHHHHHHHH
Q 019395 101 SSKVLDNAFDWAEKYGVKVIVDLH---AAPGSQ---NGNE-------HSATRDGFQEWG--------DSNVADTVAVIDF 159 (341)
Q Consensus 101 ~l~~ld~~i~~a~~~gi~vildlh---~~~g~~---~~~~-------~~g~~~~~~~w~--------~~~~~~~~~~~~~ 159 (341)
..+.|+++|+.|+++||.||||+- ..+... +.++ +.+.+.....|. +..++..++.++.
T Consensus 439 TPeDLK~LVD~aH~~GI~VILDvV~NH~~~d~~~GL~~fDGt~~~Yf~~~~~g~~~~WGs~~fnyg~~EVr~FLLsna~y 518 (872)
T PLN03244 439 TPDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHTGKRGHHKHWGTRMFKYGDLDVLHFLISNLNW 518 (872)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEecCccCCCccccchhhcCCCccceeccCCCCccCCCCCceecCCCHHHHHHHHHHHHH
Confidence 468899999999999999999963 222210 1111 111111122343 5566777788888
Q ss_pred HHHHhCCC----Cce---eEEE--e------ecC-CCCCCCChHHHHHHHHHHHHHHHhcCCCceEEEeC
Q 019395 160 LAARYANR----PSL---AAIE--L------INE-PLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSN 213 (341)
Q Consensus 160 la~~y~~~----~~v---~~~e--l------~NE-P~~~~~~~~~~~~~~~~~~~aIR~~~p~~~v~~~~ 213 (341)
..+.|+=+ .+| +-.+ + .+| |+ ......-..|++.+-.+|++..|+.+.|.++
T Consensus 519 WleEyhIDGFRfDaVtSMLY~d~G~~~f~g~~~~y~n--~~~d~dAv~fL~laN~~ih~~~P~~itIAED 586 (872)
T PLN03244 519 WITEYQIDGFQFHSLASMIYTHNGFASFNGDLDDYCN--QYVDKDALMYLILANEILHALHPKIITIAED 586 (872)
T ss_pred HHHHhCcCcceeecchhheeeccccccccCCcccccc--ccCCchHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 88877421 111 1111 1 011 11 1112356678888888999999998777763
No 108
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=90.75 E-value=0.6 Score=41.09 Aligned_cols=109 Identities=17% Similarity=0.136 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHcCCeEEEecCCCC-----CC---------------CCCCC----CCC--CCC-CccCCc--------
Q 019395 102 SKVLDNAFDWAEKYGVKVIVDLHAAP-----GS---------------QNGNE----HSA--TRD-GFQEWG-------- 146 (341)
Q Consensus 102 l~~ld~~i~~a~~~gi~vildlh~~~-----g~---------------~~~~~----~~g--~~~-~~~~w~-------- 146 (341)
.+..+.+|+...+.|.+.|++|--.. .. |..++ .+| ... +.....
T Consensus 23 g~~~~~f~~~~~~~ga~~m~T~pm~G~Vakd~~~~~~~~~fp~~~y~~Q~~~d~~~~~~Gng~~~~~~~~~~~~P~~~~~ 102 (239)
T PF12891_consen 23 GDVADTFIDQNLAAGAYSMMTLPMIGYVAKDANSVSESESFPSWRYGPQQWFDPWNPDCGNGVKPDKTALTSNDPDTPDN 102 (239)
T ss_dssp THHHHHHHHHHHHTT-EEEEEE--SSEEES-BSEGBGGGTSSSTTEEEBS-EETTEEEEE-SEESTSSS--SSSGGSSSS
T ss_pred HHHHHHHHHHhhhcCcceeEeecccceEecCCCCcccccCCChhhcccccccCcCcCCCCccccCCCCCCCCCCCCCCcc
Confidence 47788999999999999999886331 00 00000 000 000 000010
Q ss_pred hhHHHHHHHHHHHHHHHhCCC---CceeEEEeecCCCC----------CCCChHHHHHHHHHHHHHHHhcCCCceEEEeC
Q 019395 147 DSNVADTVAVIDFLAARYANR---PSLAAIELINEPLA----------PGVALDTLKSYYKAGYDAVRKYTSTAYVIMSN 213 (341)
Q Consensus 147 ~~~~~~~~~~~~~la~~y~~~---~~v~~~el~NEP~~----------~~~~~~~~~~~~~~~~~aIR~~~p~~~v~~~~ 213 (341)
+.+++ +++..|..+|+.- ..|-+|.|-|||.. .+.+.+++..-+.+..++||+++|+..|+-..
T Consensus 103 ~~y~~---ewV~~l~~~~g~a~~~~gvk~y~lDNEP~LW~~TH~dVHP~~~t~~El~~r~i~~AkaiK~~DP~a~v~GP~ 179 (239)
T PF12891_consen 103 PVYMD---EWVNYLVNKYGNASTNGGVKYYSLDNEPDLWHSTHRDVHPEPVTYDELRDRSIEYAKAIKAADPDAKVFGPV 179 (239)
T ss_dssp EEEHH---HHHHHHHHHH--TTSTTS--EEEESS-GGGHHHHTTTT--S---HHHHHHHHHHHHHHHHHH-TTSEEEEEE
T ss_pred HhHHH---HHHHHHHHHHhccccCCCceEEEecCchHhhcccccccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEeech
Confidence 12334 4466666677654 36888999999985 23566788888889999999999998777544
No 109
>KOG2566 consensus Beta-glucocerebrosidase [Carbohydrate transport and metabolism]
Probab=90.69 E-value=15 Score=34.67 Aligned_cols=198 Identities=18% Similarity=0.227 Sum_probs=97.7
Q ss_pred HHHHHHH---cCCeEEEecCCCCCCCC--C-CCCCCCCCCccCCchhHHHHHHHHHHHHHHHhCCCC-ceeEEEeecCCC
Q 019395 108 AFDWAEK---YGVKVIVDLHAAPGSQN--G-NEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRP-SLAAIELINEPL 180 (341)
Q Consensus 108 ~i~~a~~---~gi~vildlh~~~g~~~--~-~~~~g~~~~~~~w~~~~~~~~~~~~~~la~~y~~~~-~v~~~el~NEP~ 180 (341)
.|+.|.+ .+|+..-.....||..- + ....|...+.+. +.+-+.++++.-.+.+.|..+. ..+|...-|||.
T Consensus 182 ~ik~A~~~~~~~lklfAsPWsaPgWlKttg~m~G~G~l~g~~~--d~yhqtya~YfvkFleaY~~~gi~FWglt~qNEPs 259 (518)
T KOG2566|consen 182 FIKKAQKYNQGNLKLFASPWSAPGWLKTTGRMNGKGALLGDPG--DIYHQTYARYFVKFLEAYAKHGIQFWGLTTQNEPS 259 (518)
T ss_pred HHHHHHHhcCCCceEEecCCCCCceeeecccccccccccCCCC--chhHHHHHHHHHHHHHHHHhcCceEEeecccCCCC
Confidence 5555544 45777777777776421 1 111111111110 2445566666666666776554 678888999999
Q ss_pred CC----------CCChHHHHHHHHHHHH-HHHhc--CCCceEEEe-CCCCC-CCh-hhhhhccCCCCc-EEEEeeecCCC
Q 019395 181 AP----------GVALDTLKSYYKAGYD-AVRKY--TSTAYVIMS-NRLGP-ADH-KELLSFASGLSR-VVIDVHYYNLF 243 (341)
Q Consensus 181 ~~----------~~~~~~~~~~~~~~~~-aIR~~--~p~~~v~~~-~~~~~-~~~-~~~~~~~~~~~~-~v~~~H~Y~~~ 243 (341)
.+ +-+.+..+.|...-+. ++.+. ..+..|++- +.-+. ..| ...++-++..+. --+.+|.|.-|
T Consensus 260 tG~d~~~k~Qtl~ftae~qRdFik~dLGPaLa~s~~~knvkllilDD~Rg~LP~WadtvlnDpeAakYv~GIaVHwY~df 339 (518)
T KOG2566|consen 260 TGSDKKWKWQTLGFTAETQRDFIKKDLGPALASSKTTKNVKLLILDDQRGLLPHWADTVLNDPEAAKYVHGIAVHWYQDF 339 (518)
T ss_pred cCcccCCceeecccCHHHHHHHHHHhcchhhhcCCcCCceEEEEecCCccCCCccchhhccChhhhhhccceEEEeeccc
Confidence 63 1345666677665543 33333 234555554 32111 111 122222111111 24899999875
Q ss_pred CccccCccchhhhHHHHhhhhhhhhhhhccCCCceEEEeecCCCC----CCCCCHHHHHHHHHHHHHHHccCCCcEEEec
Q 019395 244 SNNFNGLNVQQNIDYVNNQRASDLGAVTTSNGPLTFVGEWTCEWN----VKDASKQDYQRFANAQLDVYGRATFGWAYWA 319 (341)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~vGE~g~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~W~ 319 (341)
.... .+++.-.+ +....-++-+|=++.+. ..-++-+.-.+|..+.++-+...-.||.=|.
T Consensus 340 ~~pa------~~L~eTh~----------~hP~~fifgTEAc~Gy~~~d~v~~Gswdrae~yasdii~dlnn~vtGWtdwN 403 (518)
T KOG2566|consen 340 LEPA------KHLDETHR----------KHPNTFIFGTEACAGYKSKDGVDLGSWDRAEQYASDIITDLNNHVTGWTDWN 403 (518)
T ss_pred cChh------hhhhhHHh----------hCCCeEEEeehhccccccccCccccchhhHHHHHHHHHHhhhhhccceeeee
Confidence 4221 12221111 11122133345443332 1112334445677777777776677999998
Q ss_pred cccC
Q 019395 320 HKCE 323 (341)
Q Consensus 320 ~k~~ 323 (341)
+--+
T Consensus 404 l~Ld 407 (518)
T KOG2566|consen 404 LILD 407 (518)
T ss_pred eEec
Confidence 7644
No 110
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=89.56 E-value=5.4 Score=36.73 Aligned_cols=126 Identities=18% Similarity=0.241 Sum_probs=71.7
Q ss_pred hccCHHHHHHHHH---CCCCEEEcCcccccccCCCCCCCcc-cchHHHHHHHHHHHHHcCCeEEEecC-CCCCCCCCCCC
Q 019395 61 SYITDEDFKFLSS---NGINAVRIPVGWWIANDPTPPKPFV-GGSSKVLDNAFDWAEKYGVKVIVDLH-AAPGSQNGNEH 135 (341)
Q Consensus 61 ~~~~e~d~~~i~~---~G~N~VRlpi~~~~~~~~~~~~~~~-~~~l~~ld~~i~~a~~~gi~vildlh-~~~g~~~~~~~ 135 (341)
..++++.++.|++ .|++ +||.++.+..-+..- ..+. ....+.+.++++.++++|+.|.+++- +.||
T Consensus 119 d~l~~e~l~~L~~l~~~G~~-~~i~lGlQS~~d~~L-~~i~Rg~t~~~~~~ai~~l~~~gi~v~~~lI~GlPg------- 189 (302)
T TIGR01212 119 DCVPDEVLDLLAEYVERGYE-VWVELGLQTAHDKTL-KKINRGHDFACYVDAVKRARKRGIKVCSHVILGLPG------- 189 (302)
T ss_pred CcCCHHHHHHHHHhhhCCce-EEEEEccCcCCHHHH-HHHcCcChHHHHHHHHHHHHHcCCEEEEeEEECCCC-------
Confidence 3456766666664 5885 444443322211000 0000 12467788899999999999877654 3342
Q ss_pred CCCCCCccCCchhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCC--------CCChHHHHHHHHHHHHHHHhcCCCc
Q 019395 136 SATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP--------GVALDTLKSYYKAGYDAVRKYTSTA 207 (341)
Q Consensus 136 ~g~~~~~~~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~--------~~~~~~~~~~~~~~~~aIR~~~p~~ 207 (341)
+..+.+.+.++.+.+- +-..|..+-+.-+|..+ ......+..++..+...++...|+.
T Consensus 190 ------------et~e~~~~t~~~l~~l--~~d~i~i~~l~~~pgT~L~~~~~~g~~~~~~~~e~~~~~~~~l~~l~~~~ 255 (302)
T TIGR01212 190 ------------EDREEMMETAKIVSLL--DVDGIKIHPLHVVKGTKMAKMYEKGELKTLSLEEYISLACDFLEHLPPEV 255 (302)
T ss_pred ------------CCHHHHHHHHHHHHhc--CCCEEEEEEEEecCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCcCe
Confidence 2345666666666542 22345446677788741 1122345678888888888888866
Q ss_pred eE
Q 019395 208 YV 209 (341)
Q Consensus 208 ~v 209 (341)
.|
T Consensus 256 ~i 257 (302)
T TIGR01212 256 VI 257 (302)
T ss_pred EE
Confidence 44
No 111
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=89.52 E-value=4.5 Score=38.05 Aligned_cols=122 Identities=19% Similarity=0.083 Sum_probs=72.3
Q ss_pred hccCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcc-cchHHHHHHHHHHHHHcCCe-EEEecC-CCCCCCCCCCCCC
Q 019395 61 SYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV-GGSSKVLDNAFDWAEKYGVK-VIVDLH-AAPGSQNGNEHSA 137 (341)
Q Consensus 61 ~~~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~-~~~l~~ld~~i~~a~~~gi~-vildlh-~~~g~~~~~~~~g 137 (341)
.-++++.++.++++|+|.|-|.| ..+-+..- .... ....+.+.++++.+++.|+. |-+|+- +.||
T Consensus 94 ~~~~~e~l~~l~~~GvnRiSiGv--QS~~~~~L-~~lgR~~~~~~~~~ai~~lr~~g~~~v~iDli~GlPg--------- 161 (350)
T PRK08446 94 NSATKAWLKGMKNLGVNRISFGV--QSFNEDKL-KFLGRIHSQKQIIKAIENAKKAGFENISIDLIYDTPL--------- 161 (350)
T ss_pred CCCCHHHHHHHHHcCCCEEEEec--ccCCHHHH-HHcCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCC---------
Confidence 34689999999999999666555 22211100 0000 12467888899999999996 558875 3343
Q ss_pred CCCCccCCchhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCC-----CChHHHHHHHHHHHHHHHhcCCCc
Q 019395 138 TRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPG-----VALDTLKSYYKAGYDAVRKYTSTA 207 (341)
Q Consensus 138 ~~~~~~~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~-----~~~~~~~~~~~~~~~aIR~~~p~~ 207 (341)
.+.+.+.+.++.+.+ . +-+.|..+.+.=||..+- ... .-...+..+.+.+++.+=.+
T Consensus 162 ----------qt~~~~~~~l~~~~~-l-~~~~is~y~L~~~~gT~l~~~~~~~~-~~~~~~~~~~~~l~~~Gy~~ 223 (350)
T PRK08446 162 ----------DNKKLLKEELKLAKE-L-PINHLSAYSLTIEENTPFFEKNHKKK-DDENLAKFFIEQLEELGFKQ 223 (350)
T ss_pred ----------CCHHHHHHHHHHHHh-c-CCCEEEeccceecCCChhHHhhhcCC-CHHHHHHHHHHHHHHCCCcE
Confidence 234455555555543 2 234566677777886421 001 11246667777777776443
No 112
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.37 E-value=2.7 Score=40.25 Aligned_cols=145 Identities=16% Similarity=0.028 Sum_probs=84.9
Q ss_pred HHHHHHHHHCCCCEEEcCccccc--c----cCCCCCC-Cc---ccchHHHHHHHHHHHHHcCCeEEEecCCC----CCC-
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWI--A----NDPTPPK-PF---VGGSSKVLDNAFDWAEKYGVKVIVDLHAA----PGS- 129 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~--~----~~~~~~~-~~---~~~~l~~ld~~i~~a~~~gi~vildlh~~----~g~- 129 (341)
.+.++.+..+|||+|=..|.-.. + .-|.... +. .....+-|..+|+.|+++||.|+-=+--+ +.+
T Consensus 67 ~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~~~a~~~s~ 146 (418)
T COG1649 67 KDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGLPGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPYRMAPPTSP 146 (418)
T ss_pred HHHHHHHHHcCCceeEEEEecCccccccccccccccCcCcccCCCCCCChHHHHHHHHHhcCCeeeechhhcccCCCCCh
Confidence 67889999999999977552110 0 0011100 11 24478899999999999999988511100 000
Q ss_pred ---------C---CCCCCCCCCCC--ccCCc----hhHHHHHHHHHHHHHHHhCCCC----ceeE---------------
Q 019395 130 ---------Q---NGNEHSATRDG--FQEWG----DSNVADTVAVIDFLAARYANRP----SLAA--------------- 172 (341)
Q Consensus 130 ---------~---~~~~~~g~~~~--~~~w~----~~~~~~~~~~~~~la~~y~~~~----~v~~--------------- 172 (341)
. .+.... ...+ ...|. ++.++...+.+.+++++|.=+. ....
T Consensus 147 ~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~YdvDGIQfDd~fy~~~~~gy~~~~~~~y 225 (418)
T COG1649 147 LTKRHPHWLTTKRPGWVYV-RHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNYDVDGIQFDDYFYYPIPFGYDPDTVTLY 225 (418)
T ss_pred hHhhCCCCcccCCCCeEEE-ecCCceeeeEeCCCChHHHHHHHHHHHHHHhCCCCCceecceeecccCccccCchHHHHH
Confidence 0 000000 0011 23343 7788888899999999985322 1221
Q ss_pred -EEeecCCCCCCCChH--------HHHHHHHHHHHHHHhcCCCceEEEeC
Q 019395 173 -IELINEPLAPGVALD--------TLKSYYKAGYDAVRKYTSTAYVIMSN 213 (341)
Q Consensus 173 -~el~NEP~~~~~~~~--------~~~~~~~~~~~aIR~~~p~~~v~~~~ 213 (341)
+|-.+.|- .+.. ...+++.++..+||++.|+..+.++.
T Consensus 226 ~~et~~~~~---~~~~~w~~WRr~~i~~~v~~i~~~VKavKp~v~~svsp 272 (418)
T COG1649 226 RYETGKGPP---SNPDQWTDWRRDNITALVAQISQTVKAVKPNVKFSVSP 272 (418)
T ss_pred HhhccCCCC---CCHHHHHHHHHHhHHHHHHHHHHHHHhhCCCeEEEEcc
Confidence 11111111 1222 34568899999999999999998876
No 113
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=89.15 E-value=0.82 Score=44.93 Aligned_cols=58 Identities=26% Similarity=0.351 Sum_probs=39.7
Q ss_pred HHHHHHHHCCCCEEEc-Cccccccc----CCCCCCCcc--cchHHHHHHHHHHHHHcCCeEEEec
Q 019395 66 EDFKFLSSNGINAVRI-PVGWWIAN----DPTPPKPFV--GGSSKVLDNAFDWAEKYGVKVIVDL 123 (341)
Q Consensus 66 ~d~~~i~~~G~N~VRl-pi~~~~~~----~~~~~~~~~--~~~l~~ld~~i~~a~~~gi~vildl 123 (341)
+-++.|+++|+++|=| |+...... ........+ -+.++.++++|+.|+++||+||+|+
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~ 97 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDL 97 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 6789999999999966 23211000 000001111 3578999999999999999999998
No 114
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=89.12 E-value=0.87 Score=41.87 Aligned_cols=52 Identities=17% Similarity=0.164 Sum_probs=40.1
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecC
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 124 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh 124 (341)
.+.++.+++.||.-|=.++.. | +.-.+..+.+++++++.|.+.|++||+|+-
T Consensus 19 ~~Yi~~~~~~Gf~~IFtsl~~-----~---~~~~~~~~~~~~ell~~Anklg~~vivDvn 70 (360)
T COG3589 19 IAYIDRMHKYGFKRIFTSLLI-----P---EEDAELYFHRFKELLKEANKLGLRVIVDVN 70 (360)
T ss_pred HHHHHHHHHcCccceeeeccc-----C---CchHHHHHHHHHHHHHHHHhcCcEEEEEcC
Confidence 566778889999977665532 2 222345899999999999999999999975
No 115
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=89.04 E-value=1.4 Score=45.91 Aligned_cols=59 Identities=19% Similarity=0.189 Sum_probs=40.5
Q ss_pred HHHHHHHHHCCCCEEEcCccccccc------CCCCCCCccc--chHHHHHHHHHHHHHcCCeEEEec
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIAN------DPTPPKPFVG--GSSKVLDNAFDWAEKYGVKVIVDL 123 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~------~~~~~~~~~~--~~l~~ld~~i~~a~~~gi~vildl 123 (341)
.+-+..|+++|+++|=|+=-+.... +.......++ +..+.++++++.|+++||+||+|+
T Consensus 19 ~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDi 85 (825)
T TIGR02401 19 AALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDI 85 (825)
T ss_pred HHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 6788999999999997732111100 0001111122 368999999999999999999997
No 116
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=88.89 E-value=5 Score=39.63 Aligned_cols=123 Identities=17% Similarity=0.242 Sum_probs=73.6
Q ss_pred hccCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCc-ccchHHHHHHHHHHHHHcCC-eEEEecC-CCCCCCCCCCCCC
Q 019395 61 SYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF-VGGSSKVLDNAFDWAEKYGV-KVIVDLH-AAPGSQNGNEHSA 137 (341)
Q Consensus 61 ~~~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~-~~~~l~~ld~~i~~a~~~gi-~vildlh-~~~g~~~~~~~~g 137 (341)
..++++.++.|+++|+| ||.|+-..+-+..- ..+ .....+.+.++++.|++.|+ .|-+|+- +.||
T Consensus 265 d~it~e~L~~Lk~~Gv~--RISIGvQS~~d~vL-k~igR~ht~e~v~~ai~~ar~~Gf~~In~DLI~GLPg--------- 332 (488)
T PRK08207 265 DTITEEKLEVLKKYGVD--RISINPQTMNDETL-KAIGRHHTVEDIIEKFHLAREMGFDNINMDLIIGLPG--------- 332 (488)
T ss_pred CCCCHHHHHHHHhcCCC--eEEEcCCcCCHHHH-HHhCCCCCHHHHHHHHHHHHhCCCCeEEEEEEeCCCC---------
Confidence 35789999999999999 55554332211000 000 02357888899999999999 6778875 3343
Q ss_pred CCCCccCCchhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCC---------CCChHHHHHHHHHHHHHHHhcCCCc
Q 019395 138 TRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP---------GVALDTLKSYYKAGYDAVRKYTSTA 207 (341)
Q Consensus 138 ~~~~~~~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~---------~~~~~~~~~~~~~~~~aIR~~~p~~ 207 (341)
.+.+.+.+.++.+.+ ++ -+.+-.+.|.=+|..+ ..+.+.....++.+.+.+++.+=..
T Consensus 333 ----------Et~ed~~~tl~~l~~-L~-pd~isv~~L~i~~gT~l~~~~~~~~~~~~~~~~~m~~~a~~~l~~~Gy~~ 399 (488)
T PRK08207 333 ----------EGLEEVKHTLEEIEK-LN-PESLTVHTLAIKRASRLTENKEKYKVADREEIEKMMEEAEEWAKELGYVP 399 (488)
T ss_pred ----------CCHHHHHHHHHHHHh-cC-cCEEEEEeceEcCCChHHHhcCcCCCcCHHHHHHHHHHHHHHHHHcCCHh
Confidence 334555566665544 21 2234334455455431 1234566778888888888777544
No 117
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=87.63 E-value=14 Score=34.67 Aligned_cols=142 Identities=12% Similarity=0.152 Sum_probs=76.5
Q ss_pred HHHHHHHHHCCCCEEEcCccc---ccccCCCCC-----CCcccc---hHHHHHHHHHHHHHcCCeEEEecCCCCCCCC--
Q 019395 65 DEDFKFLSSNGINAVRIPVGW---WIANDPTPP-----KPFVGG---SSKVLDNAFDWAEKYGVKVIVDLHAAPGSQN-- 131 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~---~~~~~~~~~-----~~~~~~---~l~~ld~~i~~a~~~gi~vildlh~~~g~~~-- 131 (341)
++-++.|+..++|.+-+.+.- |.+.-+.-+ +.+..+ ..+.++++|+.|+++||.||..+-. ||...
T Consensus 21 k~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~~rgI~vIPEID~-PGH~~a~ 99 (348)
T cd06562 21 KRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLRGIRVIPEIDT-PGHTGSW 99 (348)
T ss_pred HHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHHHcCCEEEEeccC-chhhHHH
Confidence 677888899999999987742 222211100 111111 4789999999999999999987632 22110
Q ss_pred ----------CCC----CCCCCC-CccCCc-hhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCC------------
Q 019395 132 ----------GNE----HSATRD-GFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPG------------ 183 (341)
Q Consensus 132 ----------~~~----~~g~~~-~~~~w~-~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~------------ 183 (341)
... .+.... +...-. ++..+-..++++.+++-|.+.---+|=|=.+......
T Consensus 100 ~~~~p~l~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~vl~E~~~lF~~~~iHiGgDE~~~~~w~~~p~~~~~m~~~g 179 (348)
T cd06562 100 GQGYPELLTGCYAVWRKYCPEPPCGQLNPTNPKTYDFLKTLFKEVSELFPDKYFHLGGDEVNFNCWNSNPEIQKFMKKNN 179 (348)
T ss_pred HHhChhhhCCCCccccccccCCCCccccCCChhHHHHHHHHHHHHHHhcCCcceEeecCCCCCCcccCCHHHHHHHHHcC
Confidence 000 000000 000111 4566666778888888886322113322222211100
Q ss_pred -CC-hHHHHHHHHHHHHHHHhcCCCc
Q 019395 184 -VA-LDTLKSYYKAGYDAVRKYTSTA 207 (341)
Q Consensus 184 -~~-~~~~~~~~~~~~~aIR~~~p~~ 207 (341)
.+ .+.+..|.+++.+.+++.+...
T Consensus 180 ~~~~~~l~~~f~~~~~~~l~~~Gk~~ 205 (348)
T cd06562 180 GTDYSDLESYFIQRALDIVRSLGKTP 205 (348)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCeE
Confidence 11 1233457888889999887443
No 118
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=87.32 E-value=2.1 Score=44.97 Aligned_cols=60 Identities=13% Similarity=0.114 Sum_probs=40.9
Q ss_pred HHHHHHHHHCCCCEEEcCcccccc------cCCCCCCCccc--chHHHHHHHHHHHHHcCCeEEEecC
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIA------NDPTPPKPFVG--GSSKVLDNAFDWAEKYGVKVIVDLH 124 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~------~~~~~~~~~~~--~~l~~ld~~i~~a~~~gi~vildlh 124 (341)
.+-+..|+++|+|+|=|+=-+... -+.......++ +..+.++++++.|+++||+||+|+-
T Consensus 23 ~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV 90 (879)
T PRK14511 23 AELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIV 90 (879)
T ss_pred HHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 678899999999999874211110 00000111122 3679999999999999999999983
No 119
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=87.07 E-value=17 Score=34.27 Aligned_cols=138 Identities=10% Similarity=0.060 Sum_probs=76.0
Q ss_pred HHHHHHHHHCCCCEEEcCccc---ccccCCC-C--------------------------CCCcccchHHHHHHHHHHHHH
Q 019395 65 DEDFKFLSSNGINAVRIPVGW---WIANDPT-P--------------------------PKPFVGGSSKVLDNAFDWAEK 114 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~---~~~~~~~-~--------------------------~~~~~~~~l~~ld~~i~~a~~ 114 (341)
++-++.|+..++|.+-+.+.- |.+.-+. | ++-| ..+.++++|+.|++
T Consensus 21 k~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~Y---T~~di~eiv~yA~~ 97 (357)
T cd06563 21 KRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFY---TQEEIREIVAYAAE 97 (357)
T ss_pred HHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceE---CHHHHHHHHHHHHH
Confidence 677888999999999998742 1111110 0 0112 37899999999999
Q ss_pred cCCeEEEecCCCCCCCC-------CCCCC----------CCCCCccCCc-hhHHHHHHHHHHHHHHHhCCCCceeEEEee
Q 019395 115 YGVKVIVDLHAAPGSQN-------GNEHS----------ATRDGFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELI 176 (341)
Q Consensus 115 ~gi~vildlh~~~g~~~-------~~~~~----------g~~~~~~~w~-~~~~~~~~~~~~~la~~y~~~~~v~~~el~ 176 (341)
+||.||..+-. ||... ..... +...+...-. +...+-..++++++++-|.+.---+|-|=.
T Consensus 98 rgI~VIPEID~-PGH~~a~l~~~pel~~~~~~~~~~~~~~~~~~~L~~~~~~t~~f~~~ll~E~~~lF~~~~iHiGgDE~ 176 (357)
T cd06563 98 RGITVIPEIDM-PGHALAALAAYPELGCTGGPGSVVSVQGVVSNVLCPGKPETYTFLEDVLDEVAELFPSPYIHIGGDEV 176 (357)
T ss_pred cCCEEEEecCC-chhHHHHHHhCccccCCCCCCccccccCcCCCccCCCChhHHHHHHHHHHHHHHhCCCCeEEEecccc
Confidence 99999987643 12100 00000 0000011111 566667778888888888642211332222
Q ss_pred cCCCCC-------------CCCh-HHHHHHHHHHHHHHHhcCCC
Q 019395 177 NEPLAP-------------GVAL-DTLKSYYKAGYDAVRKYTST 206 (341)
Q Consensus 177 NEP~~~-------------~~~~-~~~~~~~~~~~~aIR~~~p~ 206 (341)
+.-... ..+. +.+..|.+++.+.+++.+.+
T Consensus 177 ~~~~w~~~~~~~~~~~~~g~~~~~~l~~~f~~~~~~~v~~~G~~ 220 (357)
T cd06563 177 PKGQWEKSPACQARMKEEGLKDEHELQSYFIKRVEKILASKGKK 220 (357)
T ss_pred CCcccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCE
Confidence 221110 0122 23456788999999987643
No 120
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=86.66 E-value=19 Score=34.35 Aligned_cols=130 Identities=13% Similarity=0.035 Sum_probs=73.0
Q ss_pred CHHHHHHHHHCCCCEEEcCcccc---cccCCCCCCCcc----cchHHHHHHHHHHHHHcCCeEEEecCCC----CCCCCC
Q 019395 64 TDEDFKFLSSNGINAVRIPVGWW---IANDPTPPKPFV----GGSSKVLDNAFDWAEKYGVKVIVDLHAA----PGSQNG 132 (341)
Q Consensus 64 ~e~d~~~i~~~G~N~VRlpi~~~---~~~~~~~~~~~~----~~~l~~ld~~i~~a~~~gi~vildlh~~----~g~~~~ 132 (341)
.++-++.+|++|++.|=|---.- ..- ++....++ .-.-+.|.++++.|+++||++-+-+... |.....
T Consensus 83 ~~~Wa~~~k~AGakY~vlTaKHHDGF~lw-~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~Y~S~~DW~~p~y~~~ 161 (384)
T smart00812 83 PEEWADLFKKAGAKYVVLTAKHHDGFCLW-DSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGLYHSLFDWFNPLYAGP 161 (384)
T ss_pred HHHHHHHHHHcCCCeEEeeeeecCCcccc-CCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEEEcCHHHhCCCccccc
Confidence 46778888999999998742110 000 11111221 1145889999999999999998833211 111100
Q ss_pred CCCCCCCCCccCCchhHHHH---HHHHHHHHHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCc
Q 019395 133 NEHSATRDGFQEWGDSNVAD---TVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTA 207 (341)
Q Consensus 133 ~~~~g~~~~~~~w~~~~~~~---~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~ 207 (341)
.........+ +.+.+. +..-+++|..+|+. .-++ +|...+-. ...+ -.+++++.||+..|+.
T Consensus 162 ---~~~~~~~~~~-~~~~~y~~~~~~Ql~ELit~Ygp-d~lW-fD~~~~~~-----~~~~--~~~~l~~~~~~~qP~~ 226 (384)
T smart00812 162 ---TSSDEDPDNW-PRFQEFVDDWLPQLRELVTRYKP-DLLW-FDGGWEAP-----DDYW--RSKEFLAWLYNLSPVK 226 (384)
T ss_pred ---cccccccccc-hhHHHHHHHHHHHHHHHHhcCCC-ceEE-EeCCCCCc-----cchh--cHHHHHHHHHHhCCCC
Confidence 0000001111 223333 47788889999977 5555 78654311 1222 2567888899999976
No 121
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=85.54 E-value=3 Score=42.16 Aligned_cols=60 Identities=20% Similarity=0.069 Sum_probs=42.2
Q ss_pred HHHHHHHHHCCCCEEEcCccccc-----c-cCCCCCC-------Cccc--chHHHHHHHHHHHHHcCCeEEEecC
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWI-----A-NDPTPPK-------PFVG--GSSKVLDNAFDWAEKYGVKVIVDLH 124 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~-----~-~~~~~~~-------~~~~--~~l~~ld~~i~~a~~~gi~vildlh 124 (341)
+.-.+.|+++|+++|=+.=.+.. . ..|.... .+++ +.++.++++++.|+++||+||+||-
T Consensus 77 ~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlV 151 (688)
T TIGR02455 77 DALWKALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDII 151 (688)
T ss_pred hHHHHHHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 67788999999999998533221 0 0121111 1122 4689999999999999999999984
No 122
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=85.04 E-value=11 Score=36.11 Aligned_cols=123 Identities=17% Similarity=0.119 Sum_probs=71.6
Q ss_pred hccCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCc-ccchHHHHHHHHHHHHHcCCeEEEecCC-CCCCCCCCCCCCC
Q 019395 61 SYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF-VGGSSKVLDNAFDWAEKYGVKVIVDLHA-APGSQNGNEHSAT 138 (341)
Q Consensus 61 ~~~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~-~~~~l~~ld~~i~~a~~~gi~vildlh~-~~g~~~~~~~~g~ 138 (341)
..++++.++.++++|+|-|=|.| ..+ ++.--... .....+.+.++++.+++.+..|-+||-. .||
T Consensus 118 ~~~~~e~L~~l~~~GvnrisiGv--QS~-~~~~L~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPg---------- 184 (394)
T PRK08898 118 GTFEAEKFAQFRASGVNRLSIGI--QSF-NDAHLKALGRIHDGAEARAAIEIAAKHFDNFNLDLMYALPG---------- 184 (394)
T ss_pred CCCCHHHHHHHHHcCCCeEEEec--ccC-CHHHHHHhCCCCCHHHHHHHHHHHHHhCCceEEEEEcCCCC----------
Confidence 34678999999999999665554 222 11000000 0113466777888888888888888753 343
Q ss_pred CCCccCCchhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCC-------CCChHHHHHHHHHHHHHHHhcCCCc
Q 019395 139 RDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP-------GVALDTLKSYYKAGYDAVRKYTSTA 207 (341)
Q Consensus 139 ~~~~~~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~-------~~~~~~~~~~~~~~~~aIR~~~p~~ 207 (341)
...+.+.+-++.+.+ + +-+.|-.+.+.=||..+ ..+.+.....++.+.+.+++.+-.+
T Consensus 185 ---------qt~~~~~~~l~~~~~-l-~p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~ 249 (394)
T PRK08898 185 ---------QTLDEALADVETALA-F-GPPHLSLYHLTLEPNTLFAKFPPALPDDDASADMQDWIEARLAAAGYAH 249 (394)
T ss_pred ---------CCHHHHHHHHHHHHh-c-CCCEEEEeeeEECCCChhhhccCCCCChHHHHHHHHHHHHHHHHcCCch
Confidence 123344444444433 2 22356667777777542 1233456677777778888777544
No 123
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=84.97 E-value=17 Score=33.59 Aligned_cols=58 Identities=10% Similarity=0.263 Sum_probs=41.4
Q ss_pred HHHHHHHHHCCCCEEEcCccc---ccccCCC-C--------CCCcccchHHHHHHHHHHHHHcCCeEEEecCC
Q 019395 65 DEDFKFLSSNGINAVRIPVGW---WIANDPT-P--------PKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 125 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~---~~~~~~~-~--------~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~ 125 (341)
++-++.|+..++|.+-+.+.- |.+.-+. | ++.| ..+.+.++|+.|+++||.||..+-.
T Consensus 21 k~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~y---T~~di~elv~yA~~rgI~vIPEId~ 90 (311)
T cd06570 21 KRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYY---TQEQIREVVAYARDRGIRVVPEIDV 90 (311)
T ss_pred HHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCcc---CHHHHHHHHHHHHHcCCEEEEeecC
Confidence 677888999999999987731 1221111 1 1123 3689999999999999999987754
No 124
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=84.48 E-value=5.7 Score=38.86 Aligned_cols=120 Identities=14% Similarity=0.157 Sum_probs=69.8
Q ss_pred ccCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcc-cchHHHHHHHHHHHHHcCCe-EEEecC-CCCCCCCCCCCCCC
Q 019395 62 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV-GGSSKVLDNAFDWAEKYGVK-VIVDLH-AAPGSQNGNEHSAT 138 (341)
Q Consensus 62 ~~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~-~~~l~~ld~~i~~a~~~gi~-vildlh-~~~g~~~~~~~~g~ 138 (341)
.++++.++.|+++|+|.|-|.+. .+ ++.--..+. ....+.+.+.++.+++.|+. |-+|+- +.||
T Consensus 148 ~l~~e~l~~lk~~G~~risiGvq--S~-~~~~l~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPg---------- 214 (455)
T TIGR00538 148 YITKDVIDALRDEGFNRLSFGVQ--DF-NKEVQQAVNRIQPEEMIFELMNHAREAGFTSINIDLIYGLPK---------- 214 (455)
T ss_pred cCCHHHHHHHHHcCCCEEEEcCC--CC-CHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEeeCCC----------
Confidence 35899999999999997776652 12 110000000 12367788999999999996 667764 3343
Q ss_pred CCCccCCchhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCC----------CCCChHHHHHHHHHHHHHHHhcCC
Q 019395 139 RDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLA----------PGVALDTLKSYYKAGYDAVRKYTS 205 (341)
Q Consensus 139 ~~~~~~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~----------~~~~~~~~~~~~~~~~~aIR~~~p 205 (341)
.+.+.+.+.++.+.+ + +-..+..+.+.=+|.. .-.+.+...++++.+.+.+++.+=
T Consensus 215 ---------qt~e~~~~tl~~~~~-l-~~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~~~Gy 280 (455)
T TIGR00538 215 ---------QTKESFAKTLEKVAE-L-NPDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLTEAGY 280 (455)
T ss_pred ---------CCHHHHHHHHHHHHh-c-CCCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 234555555555554 2 1223433444223321 012456677788888888877663
No 125
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=84.36 E-value=16 Score=32.76 Aligned_cols=122 Identities=10% Similarity=-0.021 Sum_probs=69.1
Q ss_pred cchHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCCccCCchhHHHHHHHHHHHHHHHhCCCCceeEEEeecC
Q 019395 99 GGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINE 178 (341)
Q Consensus 99 ~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NE 178 (341)
+..++.+++.++.|+..|...|+-.....+. . . . .....+.+++.++.+++.-+...-.+++|.++.
T Consensus 86 ~~~~~~~~~~i~~a~~lGa~~i~~~~~~~~~----~--~----~---~~~~~~~~~~~l~~l~~~a~~~gv~l~iE~~~~ 152 (275)
T PRK09856 86 RESLDMIKLAMDMAKEMNAGYTLISAAHAGY----L--T----P---PNVIWGRLAENLSELCEYAENIGMDLILEPLTP 152 (275)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEcCCCCCC----C--C----C---HHHHHHHHHHHHHHHHHHHHHcCCEEEEecCCC
Confidence 4578999999999999999987542211111 0 0 0 134556777777777776666555577776642
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHhcC-CCceEEEeCCC---CCCChhhhhhccCCCCcEEEEeeecCC
Q 019395 179 PLAPGVALDTLKSYYKAGYDAVRKYT-STAYVIMSNRL---GPADHKELLSFASGLSRVVIDVHYYNL 242 (341)
Q Consensus 179 P~~~~~~~~~~~~~~~~~~~aIR~~~-p~~~v~~~~~~---~~~~~~~~~~~~~~~~~~v~~~H~Y~~ 242 (341)
+.. ....-..++.+.+++++ |+..+.+..+. .+.++...+.. ...-+..+|.-..
T Consensus 153 ~~~------~~~~t~~~~~~l~~~~~~~~v~~~~D~~h~~~~~~~~~~~i~~---~~~rI~~vHi~D~ 211 (275)
T PRK09856 153 YES------NVVCNANDVLHALALVPSPRLFSMVDICAPYVQAEPVMSYFDK---LGDKLRHLHIVDS 211 (275)
T ss_pred Ccc------cccCCHHHHHHHHHHcCCCcceeEEeecchhcCCCCHHHHHHH---hCCcEEEEEEEcC
Confidence 211 11122556777788887 56656665322 11122222221 2334777787643
No 126
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=84.29 E-value=5.6 Score=35.90 Aligned_cols=59 Identities=12% Similarity=0.101 Sum_probs=40.5
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCC
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 125 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~ 125 (341)
++-++..+.+|.+.||++-.- ...............+.+.++++.|+++|+.+.|-.|.
T Consensus 97 ~~~i~~a~~lG~~~v~~~~~~--~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~~~ 155 (279)
T TIGR00542 97 EKAIQLARDLGIRTIQLAGYD--VYYEEHDEETRRRFREGLKEAVELAARAQVTLAVEIMD 155 (279)
T ss_pred HHHHHHHHHhCCCEEEecCcc--cccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEeeCC
Confidence 788888999999999985321 00000001111335688889999999999999998763
No 127
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=83.22 E-value=5.6 Score=35.87 Aligned_cols=59 Identities=14% Similarity=0.172 Sum_probs=40.0
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCC
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 125 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~ 125 (341)
+.-++..+.+|.+.||++ +......+.. ....+...+.|+++.+.|+++||++.+-.|.
T Consensus 97 ~~~i~~a~~lG~~~v~~~-~~~~~~~~~~-~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~~ 155 (284)
T PRK13210 97 KKAIRLAQDLGIRTIQLA-GYDVYYEEKS-EETRQRFIEGLAWAVEQAAAAQVMLAVEIMD 155 (284)
T ss_pred HHHHHHHHHhCCCEEEEC-Cccccccccc-HHHHHHHHHHHHHHHHHHHHhCCEEEEEecC
Confidence 677888899999999985 2211111111 1111335678899999999999999887774
No 128
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=82.94 E-value=3.8 Score=46.14 Aligned_cols=60 Identities=12% Similarity=0.113 Sum_probs=40.8
Q ss_pred HHHHHHHHHCCCCEEEcCccccccc-CC-----CCCCCccc--chHHHHHHHHHHHHHcCCeEEEecC
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIAN-DP-----TPPKPFVG--GSSKVLDNAFDWAEKYGVKVIVDLH 124 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~-~~-----~~~~~~~~--~~l~~ld~~i~~a~~~gi~vildlh 124 (341)
.+-+.+|+++|+|+|=+.=-+.... .. ......++ +..+.++++++.|+++||+||+|+-
T Consensus 761 ~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV 828 (1693)
T PRK14507 761 EAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIV 828 (1693)
T ss_pred HHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 6778899999999998742221100 00 00011122 3688999999999999999999983
No 129
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=82.32 E-value=18 Score=34.17 Aligned_cols=88 Identities=17% Similarity=0.115 Sum_probs=54.8
Q ss_pred HHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCCccCCchhHHHHHHHHHHHHHHHhCCCCceeEEEeecC-CCC-CCC
Q 019395 107 NAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINE-PLA-PGV 184 (341)
Q Consensus 107 ~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NE-P~~-~~~ 184 (341)
+++..|+++|++|++.- ..+. . ..=.+..++++++-+-.++++|. .. |++|-=| |.. ...
T Consensus 68 ~~~~~A~~~~v~v~~~~-~~~~-----~--------~l~~~~~R~~fi~siv~~~~~~g-fD---GIdIDwE~p~~~~~~ 129 (358)
T cd02875 68 ELLCYAHSKGVRLVLKG-DVPL-----E--------QISNPTYRTQWIQQKVELAKSQF-MD---GINIDIEQPITKGSP 129 (358)
T ss_pred HHHHHHHHcCCEEEEEC-ccCH-----H--------HcCCHHHHHHHHHHHHHHHHHhC-CC---eEEEcccCCCCCCcc
Confidence 78899999999999861 1110 0 00014677788877777777773 23 3333223 221 123
Q ss_pred ChHHHHHHHHHHHHHHHhcCCCceEEEe
Q 019395 185 ALDTLKSYYKAGYDAVRKYTSTAYVIMS 212 (341)
Q Consensus 185 ~~~~~~~~~~~~~~aIR~~~p~~~v~~~ 212 (341)
..+.+..+++++.+++++.+++..|.+.
T Consensus 130 d~~~~t~llkelr~~l~~~~~~~~Lsva 157 (358)
T cd02875 130 EYYALTELVKETTKAFKKENPGYQISFD 157 (358)
T ss_pred hHHHHHHHHHHHHHHHhhcCCCcEEEEE
Confidence 3567888899998899887766556554
No 130
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=82.15 E-value=2.1 Score=40.40 Aligned_cols=53 Identities=15% Similarity=0.201 Sum_probs=36.3
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCC
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 125 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~ 125 (341)
++.++.+++.||..|=.++.- |. .-.+..++++++++++|+++||+|++|+..
T Consensus 17 ~~yi~~a~~~Gf~~iFTSL~i-----pe---~~~~~~~~~~~~l~~~a~~~~~~v~~Disp 69 (357)
T PF05913_consen 17 KAYIEKAAKYGFKRIFTSLHI-----PE---DDPEDYLERLKELLKLAKELGMEVIADISP 69 (357)
T ss_dssp HHHHHHHHCTTEEEEEEEE-----------------HHHHHHHHHHHHHHCT-EEEEEE-C
T ss_pred HHHHHHHHHCCCCEEECCCCc-----CC---CCHHHHHHHHHHHHHHHHHCCCEEEEECCH
Confidence 566788889999877665532 21 112457899999999999999999999863
No 131
>PRK14565 triosephosphate isomerase; Provisional
Probab=82.05 E-value=35 Score=30.21 Aligned_cols=134 Identities=13% Similarity=0.143 Sum_probs=73.5
Q ss_pred CHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCCcc
Q 019395 64 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQ 143 (341)
Q Consensus 64 ~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~ 143 (341)
-|--...|+++|++.|=|..+= ....+ .+.-+.+.+=+..|.++||.+|+.+-...-. ...|
T Consensus 74 GevS~~mLkd~G~~~viiGHSE-------RR~~f-~Etd~~V~~Kv~~al~~gl~pIvCiGE~~e~----r~~~------ 135 (237)
T PRK14565 74 GEISAKMLKECGCSYVILGHSE-------RRSTF-HETDSDIRLKAESAIESGLIPIICVGETLED----RENG------ 135 (237)
T ss_pred CccCHHHHHHcCCCEEEECccc-------ccCcC-CcCHHHHHHHHHHHHHCCCEEEEEcCCCHHH----HHcc------
Confidence 3556678889999988875531 11111 2223445555699999999999986532100 0000
Q ss_pred CCchhHHHHHHHHHHHHHHHhCC-CCceeEEEeecCCCCC-CCChHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCChh
Q 019395 144 EWGDSNVADTVAVIDFLAARYAN-RPSLAAIELINEPLAP-GVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRLGPADHK 221 (341)
Q Consensus 144 ~w~~~~~~~~~~~~~~la~~y~~-~~~v~~~el~NEP~~~-~~~~~~~~~~~~~~~~aIR~~~p~~~v~~~~~~~~~~~~ 221 (341)
...+. +.+++..-+.+ .+-+++ =||.+. +.....=....++++..||+..++..|+.+++-...+..
T Consensus 136 ----~~~~~---~~~Ql~~~l~~~~~ivIA----YEPvWAIGtG~~a~~e~i~~~~~~Ir~~~~~~~IlYGGSV~~~N~~ 204 (237)
T PRK14565 136 ----MTKDV---LLEQCSNCLPKHGEFIIA----YEPVWAIGGSTIPSNDAIAEAFEIIRSYDSKSHIIYGGSVNQENIR 204 (237)
T ss_pred ----ChHHH---HHHHHHHHhcCCCCEEEE----ECCHHHhCCCCCCCHHHHHHHHHHHHHhCCCceEEEcCccCHhhHH
Confidence 11111 12233332322 234455 466641 111112334577888999998888889888765545556
Q ss_pred hhhhc
Q 019395 222 ELLSF 226 (341)
Q Consensus 222 ~~~~~ 226 (341)
.++..
T Consensus 205 ~l~~~ 209 (237)
T PRK14565 205 DLKSI 209 (237)
T ss_pred HHhcC
Confidence 66654
No 132
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=81.52 E-value=1.9 Score=38.90 Aligned_cols=63 Identities=10% Similarity=0.096 Sum_probs=44.6
Q ss_pred cCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCC
Q 019395 63 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 125 (341)
Q Consensus 63 ~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~ 125 (341)
.+.+|++...+.|++.||+.++-........-..-.++.++.+.++++.|+++|+.|.+.+-.
T Consensus 72 ~~~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~ed 134 (262)
T cd07948 72 CHMDDARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSED 134 (262)
T ss_pred CCHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 468999999999999999977432111000001112457899999999999999999988753
No 133
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=81.47 E-value=25 Score=32.45 Aligned_cols=94 Identities=11% Similarity=0.116 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCCccCCchhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCC
Q 019395 102 SKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLA 181 (341)
Q Consensus 102 l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~ 181 (341)
...+.+-|+.|++.|++|+|.+-+..++. ..-.+...+.+++.+..+.+.| .+-|+|+-=|...
T Consensus 59 ~~~~~~~i~~~q~~G~KVllSiGG~~~~~------------~~~~~~~~~~fa~sl~~~~~~~----g~DGiDiD~E~~~ 122 (312)
T cd02871 59 PAEFKADIKALQAKGKKVLISIGGANGHV------------DLNHTAQEDNFVDSIVAIIKEY----GFDGLDIDLESGS 122 (312)
T ss_pred hHHHHHHHHHHHHCCCEEEEEEeCCCCcc------------ccCCHHHHHHHHHHHHHHHHHh----CCCeEEEecccCC
Confidence 45678888999999999999985442211 0011355667777777777766 4667778777542
Q ss_pred CCCChHHHHHHHHHHHHHHHhcCC-CceEEE
Q 019395 182 PGVALDTLKSYYKAGYDAVRKYTS-TAYVIM 211 (341)
Q Consensus 182 ~~~~~~~~~~~~~~~~~aIR~~~p-~~~v~~ 211 (341)
.......-..-+.++++.+|+.-+ +.+|.+
T Consensus 123 ~~~~~~~~~~~~~~~lk~lr~~~~~~~~lT~ 153 (312)
T cd02871 123 NPLNATPVITNLISALKQLKDHYGPNFILTM 153 (312)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHcCCCeEEEE
Confidence 111112233344455566665543 334444
No 134
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=80.13 E-value=8 Score=34.89 Aligned_cols=59 Identities=8% Similarity=0.143 Sum_probs=39.4
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCC
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 125 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~ 125 (341)
++-++..+.+|...|+++- +.....+. .........+.++++.+.|+++|+.+.+-.|.
T Consensus 102 ~~~i~~a~~lG~~~i~~~~-~~~~~~~~-~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~~~ 160 (283)
T PRK13209 102 RKAIQLAQDLGIRVIQLAG-YDVYYEQA-NNETRRRFIDGLKESVELASRASVTLAFEIMD 160 (283)
T ss_pred HHHHHHHHHcCCCEEEECC-cccccccc-HHHHHHHHHHHHHHHHHHHHHhCCEEEEeecC
Confidence 7788889999999999852 10000000 01111234678888999999999998888774
No 135
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=79.39 E-value=17 Score=33.43 Aligned_cols=90 Identities=11% Similarity=0.115 Sum_probs=52.9
Q ss_pred HHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCCccCCc-hhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCC
Q 019395 106 DNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGV 184 (341)
Q Consensus 106 d~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~~w~-~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~ 184 (341)
.++++.|+++|++|++-+.+..+. ++.. .. -...-. +..++.+++-+..++++|+= . |++|-=|+.. ..
T Consensus 48 ~~~~~~a~~~~~kv~~~i~~~~~~--~~~~--~~-~~~~l~~~~~r~~fi~~iv~~l~~~~~-D---GidiDwE~~~-~~ 117 (313)
T cd02874 48 ERLIEAAKRRGVKPLLVITNLTNG--NFDS--EL-AHAVLSNPEARQRLINNILALAKKYGY-D---GVNIDFENVP-PE 117 (313)
T ss_pred HHHHHHHHHCCCeEEEEEecCCCC--CCCH--HH-HHHHhcCHHHHHHHHHHHHHHHHHhCC-C---cEEEecccCC-HH
Confidence 578999999999999998765321 0000 00 000001 45667777777777777732 2 3333334432 23
Q ss_pred ChHHHHHHHHHHHHHHHhcCC
Q 019395 185 ALDTLKSYYKAGYDAVRKYTS 205 (341)
Q Consensus 185 ~~~~~~~~~~~~~~aIR~~~p 205 (341)
..+.+..+++++.+++++.+.
T Consensus 118 d~~~~~~fl~~lr~~l~~~~~ 138 (313)
T cd02874 118 DREAYTQFLRELSDRLHPAGY 138 (313)
T ss_pred HHHHHHHHHHHHHHHhhhcCc
Confidence 445677888888888876543
No 136
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=79.38 E-value=3.9 Score=37.02 Aligned_cols=50 Identities=26% Similarity=0.409 Sum_probs=40.2
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCC
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA 126 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~ 126 (341)
++-|++++++|+..|.+.+ ++. -++...+.++++++.|.+|.| +||+|+.
T Consensus 109 ~~~f~~~~~~Gv~GvKidF-----~~~-----d~Q~~v~~y~~i~~~AA~~~L--mvnfHg~ 158 (273)
T PF10566_consen 109 DEAFKLYAKWGVKGVKIDF-----MDR-----DDQEMVNWYEDILEDAAEYKL--MVNFHGA 158 (273)
T ss_dssp HHHHHHHHHCTEEEEEEE-------SS-----TSHHHHHHHHHHHHHHHHTT---EEEETTS
T ss_pred HHHHHHHHHcCCCEEeeCc-----CCC-----CCHHHHHHHHHHHHHHHHcCc--EEEecCC
Confidence 8999999999999999844 332 236689999999999999986 5899975
No 137
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=78.96 E-value=14 Score=33.38 Aligned_cols=60 Identities=17% Similarity=0.206 Sum_probs=40.9
Q ss_pred CHHHHHHHHHCCCCEEEcCcccccc-cCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecC
Q 019395 64 TDEDFKFLSSNGINAVRIPVGWWIA-NDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 124 (341)
Q Consensus 64 ~e~d~~~i~~~G~N~VRlpi~~~~~-~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh 124 (341)
.+.+++.+++.|++.||+.++-... ..... +.-.++.++.+.++++.|+++|+.|.+..-
T Consensus 80 ~~~~~~~a~~~g~~~i~i~~~~sd~~~~~~~-~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~ 140 (273)
T cd07941 80 EDPNLQALLEAGTPVVTIFGKSWDLHVTEAL-GTTLEENLAMIRDSVAYLKSHGREVIFDAE 140 (273)
T ss_pred chHHHHHHHhCCCCEEEEEEcCCHHHHHHHc-CCCHHHHHHHHHHHHHHHHHcCCeEEEeEE
Confidence 3568889999999999996642111 10000 011145788999999999999999988533
No 138
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=78.75 E-value=3.2 Score=35.17 Aligned_cols=63 Identities=16% Similarity=0.279 Sum_probs=43.0
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCC
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAP 127 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~ 127 (341)
++.++..+.+|...|+++.+.+................+.|+++.+.|+++|+.+.|-.|...
T Consensus 74 ~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~ 136 (213)
T PF01261_consen 74 KKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENHPGP 136 (213)
T ss_dssp HHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSSS
T ss_pred HHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecccCc
Confidence 788899999999999998763111111110111134678888999999999999888877653
No 139
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=78.57 E-value=68 Score=31.18 Aligned_cols=159 Identities=16% Similarity=0.178 Sum_probs=88.1
Q ss_pred HHHHHHHHHCCCCEEEcCc-------ccccccCCCCCCC--------cccchHHHHHHHHHHHHHcCCeEEEecCCCCCC
Q 019395 65 DEDFKFLSSNGINAVRIPV-------GWWIANDPTPPKP--------FVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGS 129 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi-------~~~~~~~~~~~~~--------~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~ 129 (341)
++-++.++++-+-.+|.|= .|...+.|...-| ..+..-=-..++++||++.|..++|-+.-..++
T Consensus 52 kDVle~lk~Lk~P~lR~PGGnFvs~Y~WeDGIGP~e~Rp~rldlaW~t~EtN~~Gt~EF~~~~e~iGaep~~avN~Gsrg 131 (501)
T COG3534 52 KDVLEALKDLKIPVLRWPGGNFVSGYHWEDGIGPREERPRRLDLAWGTTETNEFGTHEFMDWCELIGAEPYIAVNLGSRG 131 (501)
T ss_pred HHHHHHHHhcCCceeecCCcccccccccccCcCchhhCchhhcccccccccccccHHHHHHHHHHhCCceEEEEecCCcc
Confidence 6778899999999999983 2433333321101 112222346789999999999988876532111
Q ss_pred CCCCCCCCCCCCccCCchhHHHHHH--------HHHHHHHHHhC-CCC-ceeEEEeecCCCCC----CCChHHHHHHHHH
Q 019395 130 QNGNEHSATRDGFQEWGDSNVADTV--------AVIDFLAARYA-NRP-SLAAIELINEPLAP----GVALDTLKSYYKA 195 (341)
Q Consensus 130 ~~~~~~~g~~~~~~~w~~~~~~~~~--------~~~~~la~~y~-~~~-~v~~~el~NEP~~~----~~~~~~~~~~~~~ 195 (341)
. .....++ .+|..+-...+ ..| +|-.|.|-||-.+| ....+.+-.++.+
T Consensus 132 ------------v-----d~ar~~vEY~n~pggtywsdlR~~~G~~~P~nvK~w~lGNEm~GpWq~G~~~a~EY~~~A~e 194 (501)
T COG3534 132 ------------V-----DEARNWVEYCNHPGGTYWSDLRRENGREEPWNVKYWGLGNEMDGPWQCGHKTAPEYGRLANE 194 (501)
T ss_pred ------------H-----HHHHHHHHHccCCCCChhHHHHHhcCCCCCcccceEEeccccCCCcccccccCHHHHHHHHH
Confidence 0 0111111 24555544433 234 67678899998542 2344566667777
Q ss_pred HHHHHHhcCCCceEEE-eCCCCC-CC---hh-hhhhccCCCCcEEEEeeecC
Q 019395 196 GYDAVRKYTSTAYVIM-SNRLGP-AD---HK-ELLSFASGLSRVVIDVHYYN 241 (341)
Q Consensus 196 ~~~aIR~~~p~~~v~~-~~~~~~-~~---~~-~~~~~~~~~~~~v~~~H~Y~ 241 (341)
..+..+=.+|..-.++ +.+.++ .. +. ..+.. ....-..++.|+|.
T Consensus 195 ~~k~~k~~d~t~e~~v~g~a~~~n~~~~~W~~~vl~~-~~e~vD~ISlH~Y~ 245 (501)
T COG3534 195 YRKYMKYFDPTIENVVCGSANGANPTDPNWEAVVLEE-AYERVDYISLHYYK 245 (501)
T ss_pred HHHHHhhcCccccceEEeecCCCCCCchHHHHHHHHH-HhhhcCeEEEEEec
Confidence 7777777777644433 322221 11 11 12221 12234679999994
No 140
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=78.39 E-value=18 Score=36.12 Aligned_cols=62 Identities=16% Similarity=0.183 Sum_probs=41.2
Q ss_pred hhccCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcc-cchHHHHHHHHHHHHHcCCeEEEecC
Q 019395 60 DSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV-GGSSKVLDNAFDWAEKYGVKVIVDLH 124 (341)
Q Consensus 60 ~~~~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~-~~~l~~ld~~i~~a~~~gi~vildlh 124 (341)
...++++.++.|+++|+|.|=|.+ ..+-+..- .... ....+.+.++++.+++.|+.|.+||-
T Consensus 201 PD~i~~e~L~~L~~~G~~rVslGV--QS~~d~VL-~~inRght~~~v~~Ai~~lr~~G~~v~~~LM 263 (522)
T TIGR01211 201 PDYCREEHIDRMLKLGATRVELGV--QTIYNDIL-ERTKRGHTVRDVVEATRLLRDAGLKVVYHIM 263 (522)
T ss_pred CCcCCHHHHHHHHHcCCCEEEEEC--ccCCHHHH-HHhCCCCCHHHHHHHHHHHHHcCCeEEEEee
Confidence 345799999999999998655544 22211000 0000 12467888899999999999777764
No 141
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=77.59 E-value=9 Score=36.87 Aligned_cols=60 Identities=20% Similarity=0.268 Sum_probs=39.6
Q ss_pred HHHHHHHHHCCCCEEEcC-ccc------------ccccCCCCCCCcccchHHHHHHHHHHH-HHcCCeEEEecC
Q 019395 65 DEDFKFLSSNGINAVRIP-VGW------------WIANDPTPPKPFVGGSSKVLDNAFDWA-EKYGVKVIVDLH 124 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlp-i~~------------~~~~~~~~~~~~~~~~l~~ld~~i~~a-~~~gi~vildlh 124 (341)
++-|+.+++.|+|.|-+. +.- +.-++|.-.++-.+..++.+.++|..+ +++||.+|.|+.
T Consensus 25 ~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~DvV 98 (423)
T PF14701_consen 25 EKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTDVV 98 (423)
T ss_pred HHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEEEEe
Confidence 889999999999999873 210 000111000011123578899999887 589999999985
No 142
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=76.75 E-value=53 Score=29.00 Aligned_cols=70 Identities=13% Similarity=0.258 Sum_probs=43.5
Q ss_pred cchHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCCccCCchhHHHHHHHHHHHHHHHhCCCCceeEEEeecC
Q 019395 99 GGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINE 178 (341)
Q Consensus 99 ~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NE 178 (341)
+.+++.+.++|..|.+.||++|- |-++.-... . . .+.+.++|++-++..++.=......+++|+|.-
T Consensus 92 ~~aleiM~KaI~LA~dLGIRtIQ-LAGYDVYYE------~--~----d~eT~~rFi~g~~~a~~lA~~aqV~lAvEiMDt 158 (287)
T COG3623 92 QQALEIMEKAIQLAQDLGIRTIQ-LAGYDVYYE------E--A----DEETRQRFIEGLKWAVELAARAQVMLAVEIMDT 158 (287)
T ss_pred HHHHHHHHHHHHHHHHhCceeEe-eccceeeec------c--C----CHHHHHHHHHHHHHHHHHHHhhccEEEeeeccc
Confidence 55899999999999999999873 222211000 0 0 036677887655543332222245688999988
Q ss_pred CCC
Q 019395 179 PLA 181 (341)
Q Consensus 179 P~~ 181 (341)
|-.
T Consensus 159 pfm 161 (287)
T COG3623 159 PFM 161 (287)
T ss_pred HHH
Confidence 863
No 143
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=76.61 E-value=39 Score=30.67 Aligned_cols=127 Identities=15% Similarity=0.074 Sum_probs=69.0
Q ss_pred ccCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcc-cchHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCC
Q 019395 62 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV-GGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRD 140 (341)
Q Consensus 62 ~~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~-~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~ 140 (341)
.++++.++.|+++|++.|-+.+. ..+.-...+. ...++...+.++.+++.||.|...+- .|. +
T Consensus 120 ~~~~e~l~~Lk~aG~~~v~i~~E----~~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v~~~~i--~Gl-~--------- 183 (296)
T TIGR00433 120 LLDPEQAKRLKDAGLDYYNHNLD----TSQEFYSNIISTHTYDDRVDTLENAKKAGLKVCSGGI--FGL-G--------- 183 (296)
T ss_pred CCCHHHHHHHHHcCCCEEEEccc----CCHHHHhhccCCCCHHHHHHHHHHHHHcCCEEEEeEE--EeC-C---------
Confidence 46899999999999999988653 1111000111 23567778899999999999765432 221 0
Q ss_pred CccCCchhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCC--CCChHHHHHHHHHHHHHHHhcCCCceEEEeCC
Q 019395 141 GFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP--GVALDTLKSYYKAGYDAVRKYTSTAYVIMSNR 214 (341)
Q Consensus 141 ~~~~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~--~~~~~~~~~~~~~~~~aIR~~~p~~~v~~~~~ 214 (341)
+..+...+.++.+.+ ++ -..+...-+.=.|..+ ..+......++ +.+...|..-|+..|.+..+
T Consensus 184 -------et~~d~~~~~~~l~~-l~-~~~i~l~~l~p~~gT~l~~~~~~s~~~~~-~~ia~~r~~lp~~~i~~~~~ 249 (296)
T TIGR00433 184 -------ETVEDRIGLALALAN-LP-PESVPINFLVKIKGTPLADNKELSADDAL-KTIALARIIMPKAEIRLAGG 249 (296)
T ss_pred -------CCHHHHHHHHHHHHh-CC-CCEEEeeeeEEcCCCccCCCCCCCHHHHH-HHHHHHHHHCCcceEEEeCC
Confidence 122344455554433 22 1222211122223221 11111233333 66777788888887777654
No 144
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=75.87 E-value=14 Score=33.45 Aligned_cols=48 Identities=21% Similarity=0.153 Sum_probs=39.4
Q ss_pred cCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecC
Q 019395 63 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 124 (341)
Q Consensus 63 ~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh 124 (341)
+.++|++...+.|+..||+.++-. .++.+.+.++.++++|+.|.+.+.
T Consensus 92 ~~~~di~~~~~~g~~~iri~~~~~--------------~~~~~~~~i~~ak~~G~~v~~~i~ 139 (275)
T cd07937 92 VVELFVEKAAKNGIDIFRIFDALN--------------DVRNLEVAIKAVKKAGKHVEGAIC 139 (275)
T ss_pred HHHHHHHHHHHcCCCEEEEeecCC--------------hHHHHHHHHHHHHHCCCeEEEEEE
Confidence 368999999999999999854311 168899999999999999987664
No 145
>PTZ00333 triosephosphate isomerase; Provisional
Probab=75.75 E-value=49 Score=29.68 Aligned_cols=56 Identities=20% Similarity=0.255 Sum_probs=39.3
Q ss_pred ccCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCC
Q 019395 62 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 125 (341)
Q Consensus 62 ~~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~ 125 (341)
|.-|--...|+++|++.|=|..+=- . ..+ .+.-+.+.+-++.|.++||.+||.+-.
T Consensus 76 ~TGevS~~mL~d~G~~~viiGHSER-R------~~f-~Etd~~I~~Kv~~al~~gl~pIlCvGE 131 (255)
T PTZ00333 76 FTGEISAEMLKDLGINWTILGHSER-R------QYF-GETNEIVAQKVKNALENGLKVILCIGE 131 (255)
T ss_pred ccCcCCHHHHHHcCCCEEEECcccc-c------CcC-CCCcHHHHHHHHHHHHCCCEEEEEcCC
Confidence 3346667888999999988765421 1 111 223477888999999999999998654
No 146
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=75.45 E-value=3.1 Score=37.30 Aligned_cols=60 Identities=18% Similarity=0.039 Sum_probs=41.9
Q ss_pred CHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEec
Q 019395 64 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDL 123 (341)
Q Consensus 64 ~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildl 123 (341)
.++|++...+.|++.||+.++-........-+.-.++.++.+.++++.|+++|+.|.+.+
T Consensus 71 ~~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 130 (259)
T cd07939 71 VKEDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGA 130 (259)
T ss_pred CHHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEee
Confidence 588999999999999999774321110000001124578899999999999999987654
No 147
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=75.42 E-value=5.2 Score=40.08 Aligned_cols=60 Identities=15% Similarity=0.219 Sum_probs=41.5
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccC-----CCCCCCccc--chHHHHHHHHHHHHHcCCeEEEecC
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIAND-----PTPPKPFVG--GSSKVLDNAFDWAEKYGVKVIVDLH 124 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~-----~~~~~~~~~--~~l~~ld~~i~~a~~~gi~vildlh 124 (341)
.+-++.|+++|++++=|+=....... +.....+++ +..+.+.++|.++++.||++|+|+-
T Consensus 43 ~~kldyi~~lG~taiWisP~~~s~~~~~GY~~~d~~~l~p~fGt~edf~~Li~~~h~~gi~ii~D~v 109 (545)
T KOG0471|consen 43 TSKLDYIKELGFTAIWLSPFTKSSKPDFGYDASDLEQLRPRFGTEEDFKELILAMHKLGIKIIADLV 109 (545)
T ss_pred hhhhhHHHhcCCceEEeCCCcCCCHHHhccCccchhhhcccccHHHHHHHHHHHHhhcceEEEEeec
Confidence 56789999999999988522111110 111112222 3689999999999999999999984
No 148
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=75.39 E-value=35 Score=30.34 Aligned_cols=85 Identities=19% Similarity=0.233 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCCccCCc-hhHHHHHHHHHHHHHHHhCCCCceeEEEeecC-C
Q 019395 102 SKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINE-P 179 (341)
Q Consensus 102 l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~~w~-~~~~~~~~~~~~~la~~y~~~~~v~~~el~NE-P 179 (341)
...+..+++.|+++|++|++.+.+...+. . ...-. +...+.+++-+-.+.++|. +-|++|-=| |
T Consensus 45 ~~~~~~~~~~~~~~~~kvl~sigg~~~~~----~------~~~~~~~~~r~~fi~~lv~~~~~~~----~DGIdiDwE~~ 110 (253)
T cd06545 45 RSELNSVVNAAHAHNVKILISLAGGSPPE----F------TAALNDPAKRKALVDKIINYVVSYN----LDGIDVDLEGP 110 (253)
T ss_pred HHHHHHHHHHHHhCCCEEEEEEcCCCCCc----c------hhhhcCHHHHHHHHHHHHHHHHHhC----CCceeEEeecc
Confidence 35678889999999999999886532110 0 00011 4566777766666666763 333444334 3
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhc
Q 019395 180 LAPGVALDTLKSYYKAGYDAVRKY 203 (341)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~aIR~~ 203 (341)
.. ..+.+..+.+++..++++.
T Consensus 111 ~~---~~~~~~~fv~~Lr~~l~~~ 131 (253)
T cd06545 111 DV---TFGDYLVFIRALYAALKKE 131 (253)
T ss_pred Cc---cHhHHHHHHHHHHHHHhhc
Confidence 21 1356777777777777654
No 149
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=74.96 E-value=42 Score=28.15 Aligned_cols=129 Identities=16% Similarity=0.079 Sum_probs=72.8
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccC----CCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCC
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIAND----PTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRD 140 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~----~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~ 140 (341)
++-.+.+++.|+..+-+....-.... .....+ .+..++.+.+.++.|++.|...|+-.-.....
T Consensus 30 ~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~----------- 97 (213)
T PF01261_consen 30 EELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDE-REEALEYLKKAIDLAKRLGAKYIVVHSGRYPS----------- 97 (213)
T ss_dssp HHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSH-HHHHHHHHHHHHHHHHHHTBSEEEEECTTESS-----------
T ss_pred HHHHHHHHHcCCeEEEEecccccccccccccCcchh-hHHHHHHHHHHHHHHHHhCCCceeecCccccc-----------
Confidence 45556678899996665443210110 011112 34568999999999999999886643220000
Q ss_pred CccCCc-hhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCC-CceEEEe
Q 019395 141 GFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTS-TAYVIMS 212 (341)
Q Consensus 141 ~~~~w~-~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p-~~~v~~~ 212 (341)
..... ....+.+++.++.+++.-+...-.+++|....+... .... .+++...++++++ +.-+.+.
T Consensus 98 -~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~i~~D 164 (213)
T PF01261_consen 98 -GPEDDTEENWERLAENLRELAEIAEEYGVRIALENHPGPFSE--TPFS----VEEIYRLLEEVDSPNVGICFD 164 (213)
T ss_dssp -STTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSSSSSS--EESS----HHHHHHHHHHHTTTTEEEEEE
T ss_pred -ccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecccCcccc--chhh----HHHHHHHHhhcCCCcceEEEe
Confidence 00011 356777778888777766555555666655544421 1111 5667777788874 4445554
No 150
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=74.83 E-value=28 Score=31.94 Aligned_cols=124 Identities=17% Similarity=0.117 Sum_probs=61.8
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCC-CCCCCCCCCCCCCCCcc
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA-PGSQNGNEHSATRDGFQ 143 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~-~g~~~~~~~~g~~~~~~ 143 (341)
.+..+.+++.|+|.|=|.= .+..+ .-+.+++++.+.++-+..+.+||+|.|.+.-. |-... |-...
T Consensus 60 ~~YARllASiGINgvvlNN-----VNa~~-~~Lt~~~l~~v~~lAdvfRpYGIkv~LSvnFasP~~lg-----gL~Ta-- 126 (328)
T PF07488_consen 60 RDYARLLASIGINGVVLNN-----VNANP-KLLTPEYLDKVARLADVFRPYGIKVYLSVNFASPIELG-----GLPTA-- 126 (328)
T ss_dssp HHHHHHHHHTT--EEE-S------SS--C-GGGSTTTHHHHHHHHHHHHHTT-EEEEEE-TTHHHHTT-----S-S----
T ss_pred HHHHHHHhhcCCceEEecc-----cccCh-hhcCHHHHHHHHHHHHHHhhcCCEEEEEeeccCCcccC-----CcCcC--
Confidence 5567788999999998731 11111 23445689999999999999999999988643 21111 10000
Q ss_pred CCchhHHHHHHHHHHHHHHH-hCCCCceeEEEeecCCCCCCCC---hHHHHHHHHHHHHHHHhcC
Q 019395 144 EWGDSNVADTVAVIDFLAAR-YANRPSLAAIELINEPLAPGVA---LDTLKSYYKAGYDAVRKYT 204 (341)
Q Consensus 144 ~w~~~~~~~~~~~~~~la~~-y~~~~~v~~~el~NEP~~~~~~---~~~~~~~~~~~~~aIR~~~ 204 (341)
+..-....++|+..+++ |+--|.+-||-+-=.-.+.+-+ --.-.+-+.-+.++++-++
T Consensus 127 ---DPld~~V~~WW~~k~~eIY~~IPDfgGflVKAdSEGqPGP~~YgRthAdGANmlA~Al~P~G 188 (328)
T PF07488_consen 127 ---DPLDPEVRQWWKDKADEIYSAIPDFGGFLVKADSEGQPGPFTYGRTHADGANMLARALKPHG 188 (328)
T ss_dssp ----TTSHHHHHHHHHHHHHHHHH-TT--EEEE--SBTTB--GGGGT--HHHHHHHHHHHHGGGT
T ss_pred ---CCCCHHHHHHHHHHHHHHHHhCCCccceEEEecCCCCCCCcccCCCchhhHHHHHHHhhccC
Confidence 11224566677766543 5555777776655432221101 1123344455556665544
No 151
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=74.15 E-value=4.1 Score=37.23 Aligned_cols=61 Identities=13% Similarity=0.020 Sum_probs=43.2
Q ss_pred CHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecC
Q 019395 64 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 124 (341)
Q Consensus 64 ~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh 124 (341)
+.+|++...+.|++.||+.++-........-..-.++.++.+.++|+.|+++|+.|...+-
T Consensus 81 ~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~ 141 (287)
T PRK05692 81 NLKGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVS 141 (287)
T ss_pred CHHHHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEE
Confidence 6899999999999999997643211110010111245788999999999999999876554
No 152
>PRK09936 hypothetical protein; Provisional
Probab=74.13 E-value=69 Score=29.25 Aligned_cols=57 Identities=25% Similarity=0.362 Sum_probs=42.7
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCC
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPG 128 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g 128 (341)
++-++.++..||+++=+..+ .+.+. .+ .+.--.|-+.++.|.+.||+|+|.|+..|.
T Consensus 41 q~~~~~~~~~G~~tLivQWt--~yG~~----~f-g~~~g~La~~l~~A~~~Gl~v~vGL~~Dp~ 97 (296)
T PRK09936 41 QGLWSQLRLQGFDTLVVQWT--RYGDA----DF-GGQRGWLAKRLAAAQQAGLKLVVGLYADPE 97 (296)
T ss_pred HHHHHHHHHcCCcEEEEEee--eccCC----Cc-ccchHHHHHHHHHHHHcCCEEEEcccCChH
Confidence 78899999999999986432 23221 12 122456888999999999999999998864
No 153
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=74.00 E-value=18 Score=35.53 Aligned_cols=62 Identities=18% Similarity=0.225 Sum_probs=40.8
Q ss_pred cCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcc-cchHHHHHHHHHHHHHcCCeEEEecC-CCC
Q 019395 63 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV-GGSSKVLDNAFDWAEKYGVKVIVDLH-AAP 127 (341)
Q Consensus 63 ~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~-~~~l~~ld~~i~~a~~~gi~vildlh-~~~ 127 (341)
++++.++.|+++|++.|-+.+- ..-+..- ..+. ....+.+.++++.++++||.|.+++- +.|
T Consensus 285 ~~~e~l~~l~~aG~~~v~iGiE--S~s~~~L-~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlP 348 (472)
T TIGR03471 285 VDYETLKVMKENGLRLLLVGYE--SGDQQIL-KNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLP 348 (472)
T ss_pred CCHHHHHHHHHcCCCEEEEcCC--CCCHHHH-HHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEeCC
Confidence 5789999999999997776652 1110000 0000 12456788899999999999888763 444
No 154
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=73.86 E-value=4.6 Score=37.37 Aligned_cols=63 Identities=32% Similarity=0.407 Sum_probs=40.8
Q ss_pred hccCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcc-cchHHHHHHHHHHHHHcCCeEEEecC
Q 019395 61 SYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV-GGSSKVLDNAFDWAEKYGVKVIVDLH 124 (341)
Q Consensus 61 ~~~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~-~~~l~~ld~~i~~a~~~gi~vildlh 124 (341)
..++++.++.|+++|++ +||.++.+..-+..-...+. .-..+.+.++++.++++||.|..++-
T Consensus 113 d~i~~e~L~~l~~aG~~-~~v~iG~ES~~d~~L~~~inKg~t~~~~~~ai~~~~~~Gi~v~~~~i 176 (313)
T TIGR01210 113 EFIDEEKLEELRKIGVN-VEVAVGLETANDRIREKSINKGSTFEDFIRAAELARKYGAGVKAYLL 176 (313)
T ss_pred CcCCHHHHHHHHHcCCC-EEEEEecCcCCHHHHHHhhCCCCCHHHHHHHHHHHHHcCCcEEEEEE
Confidence 35789999999999988 35555443221110000011 11467788999999999999888764
No 155
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=73.43 E-value=19 Score=31.56 Aligned_cols=119 Identities=13% Similarity=0.118 Sum_probs=66.9
Q ss_pred CHHHHHH----HHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCC
Q 019395 64 TDEDFKF----LSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATR 139 (341)
Q Consensus 64 ~e~d~~~----i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~ 139 (341)
.+++++. +++.|+..||+.++-....-...-..-.++.++.+.++++.++++|+.|-+.+-...
T Consensus 65 ~~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~------------ 132 (237)
T PF00682_consen 65 NEEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDAS------------ 132 (237)
T ss_dssp CHHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTG------------
T ss_pred hHHHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccc------------
Confidence 4566655 456999999997653211000000111245788999999999999999966553321
Q ss_pred CCccCCchhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCceEEEe
Q 019395 140 DGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMS 212 (341)
Q Consensus 140 ~~~~~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~v~~~ 212 (341)
....+.+.++.+.+.+. + +..+. |..=-- ...+.. +.++++.||+.-|+..|-++
T Consensus 133 -------~~~~~~~~~~~~~~~~~--g-~~~i~--l~Dt~G--~~~P~~----v~~lv~~~~~~~~~~~l~~H 187 (237)
T PF00682_consen 133 -------RTDPEELLELAEALAEA--G-ADIIY--LADTVG--IMTPED----VAELVRALREALPDIPLGFH 187 (237)
T ss_dssp -------GSSHHHHHHHHHHHHHH--T--SEEE--EEETTS---S-HHH----HHHHHHHHHHHSTTSEEEEE
T ss_pred -------cccHHHHHHHHHHHHHc--C-CeEEE--eeCccC--CcCHHH----HHHHHHHHHHhccCCeEEEE
Confidence 12345666666666554 1 22221 222111 122333 45677788888777666665
No 156
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=73.29 E-value=75 Score=29.12 Aligned_cols=59 Identities=10% Similarity=0.039 Sum_probs=38.6
Q ss_pred HHHHHHHHHCC--CCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecC
Q 019395 65 DEDFKFLSSNG--INAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 124 (341)
Q Consensus 65 e~d~~~i~~~G--~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh 124 (341)
++.++.+++.| +.++=|-+.|..... ...-.++++.+...+.+|+.+++.|+++++-+|
T Consensus 27 ~~~~~~~~~~~iP~d~~~lD~~w~~~~~-~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~ 87 (308)
T cd06593 27 NEFADGMRERNLPCDVIHLDCFWMKEFQ-WCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWIN 87 (308)
T ss_pred HHHHHHHHHcCCCeeEEEEecccccCCc-ceeeEECcccCCCHHHHHHHHHHCCCeEEEEec
Confidence 45556677888 555666666642110 001234455566688999999999999999877
No 157
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=73.07 E-value=13 Score=41.12 Aligned_cols=55 Identities=11% Similarity=0.195 Sum_probs=39.9
Q ss_pred HHHHHHHHHCCCCEEEc-CcccccccCCCCCCCcc--------------cchHHHHHHHHHHHHHc-CCeEEEec
Q 019395 65 DEDFKFLSSNGINAVRI-PVGWWIANDPTPPKPFV--------------GGSSKVLDNAFDWAEKY-GVKVIVDL 123 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRl-pi~~~~~~~~~~~~~~~--------------~~~l~~ld~~i~~a~~~-gi~vildl 123 (341)
++.|+.|+++|+|.|=+ ||.- .. + .+.+|+ ++..+.++++|+.+++. ||++|+|+
T Consensus 135 ~~~L~~ik~lGyN~IhftPI~~--~G-~-SnS~Ysi~Dyl~idP~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilDv 205 (1464)
T TIGR01531 135 EPRLRVAKEKGYNMIHFTPLQE--LG-G-SNSCYSLYDQLQLNQHFKSQKDGKNDVQALVEKLHRDWNVLSITDI 205 (1464)
T ss_pred HHHHHHHHHcCCCEEEeCCCcc--CC-C-CCCCccccchhhcChhhcccCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 89999999999999988 3320 00 1 111221 14578899999999985 99999997
No 158
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=72.78 E-value=3.9 Score=37.22 Aligned_cols=121 Identities=12% Similarity=0.054 Sum_probs=70.4
Q ss_pred CHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCCcc
Q 019395 64 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQ 143 (341)
Q Consensus 64 ~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~ 143 (341)
.+.+++...+.|++.|++.++-........-..-.++.++.+.++|+.|+++|+.|.+.+-.+..+
T Consensus 76 ~~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~-------------- 141 (280)
T cd07945 76 GDKSVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNG-------------- 141 (280)
T ss_pred cHHHHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCC--------------
Confidence 477899999999999999774221111000011125689999999999999999999987643100
Q ss_pred CCchhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCC-CCChHHHHHHHHHHHHHHHhcCCCceEEEe
Q 019395 144 EWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP-GVALDTLKSYYKAGYDAVRKYTSTAYVIMS 212 (341)
Q Consensus 144 ~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~-~~~~~~~~~~~~~~~~aIR~~~p~~~v~~~ 212 (341)
+ ....+.+.++.+.+.+. +-.. ++=+..- -..+.+ ..++++.+|+.-|+..|-++
T Consensus 142 -~-r~~~~~~~~~~~~~~~~--G~~~------i~l~DT~G~~~P~~----v~~l~~~l~~~~~~~~i~~H 197 (280)
T cd07945 142 -M-RDSPDYVFQLVDFLSDL--PIKR------IMLPDTLGILSPFE----TYTYISDMVKRYPNLHFDFH 197 (280)
T ss_pred -C-cCCHHHHHHHHHHHHHc--CCCE------EEecCCCCCCCHHH----HHHHHHHHHhhCCCCeEEEE
Confidence 0 02235555666665542 1111 1222211 123344 34556666766677777776
No 159
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=72.58 E-value=29 Score=32.08 Aligned_cols=106 Identities=19% Similarity=0.114 Sum_probs=58.6
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCCccC
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQE 144 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~~ 144 (341)
.+-.+.+++.|+..|||- ++ + -.+|+....-||.|++.+-..+-. .
T Consensus 16 ~~vv~l~ks~~i~~vri~-------d~---~----------~~iL~a~a~S~i~v~v~vpN~~l~------------~-- 61 (310)
T PF00332_consen 16 CKVVSLLKSNGITKVRIY-------DA---D----------PSILRAFAGSGIEVMVGVPNEDLA------------S-- 61 (310)
T ss_dssp HHHHHHHHHTT--EEEES-------S---------------HHHHHHHTTS--EEEEEE-GGGHH------------H--
T ss_pred HHHHHHHHhcccccEEee-------cC---c----------HHHHHHHhcCCceeeeccChHHHH------------H--
Confidence 566778899999999981 11 1 167788888999999987643100 0
Q ss_pred CchhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCC
Q 019395 145 WGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTST 206 (341)
Q Consensus 145 w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~ 206 (341)
- ...+.....+++.=...|.....+-.+-+.||..... ....+..-++.+.+++++.+=.
T Consensus 62 l-a~~~~~A~~Wv~~nv~~~~~~~~i~~i~VGnEv~~~~-~~~~lvpAm~ni~~aL~~~~L~ 121 (310)
T PF00332_consen 62 L-ASSQSAAGSWVRTNVLPYLPAVNIRYIAVGNEVLTGT-DNAYLVPAMQNIHNALTAAGLS 121 (310)
T ss_dssp H-HHHHHHHHHHHHHHTCTCTTTSEEEEEEEEES-TCCS-GGGGHHHHHHHHHHHHHHTT-T
T ss_pred h-ccCHHHHhhhhhhcccccCcccceeeeecccccccCc-cceeeccHHHHHHHHHHhcCcC
Confidence 0 1112222223332223344444576677999987522 2226788888888888877643
No 160
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=72.37 E-value=51 Score=29.58 Aligned_cols=119 Identities=16% Similarity=0.094 Sum_probs=66.6
Q ss_pred HHHHHHHHHCCC--CEEEcCcccccccCCCCCC--CcccchHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCC
Q 019395 65 DEDFKFLSSNGI--NAVRIPVGWWIANDPTPPK--PFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRD 140 (341)
Q Consensus 65 e~d~~~i~~~G~--N~VRlpi~~~~~~~~~~~~--~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~ 140 (341)
.+.++.+++.|+ .+|=|.+.|.. ....- .++++.+....++|+.+++.|++|++.++-.
T Consensus 27 ~~~~~~~~~~~iP~d~~~lD~~~~~---~~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P~-------------- 89 (265)
T cd06589 27 LEVIDGMRENDIPLDGFVLDDDYTD---GYGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDPY-------------- 89 (265)
T ss_pred HHHHHHHHHcCCCccEEEECccccc---CCceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeChh--------------
Confidence 344455566664 45555555432 11112 3455567778899999999999999987643
Q ss_pred CccCCchhHHHHHHHHHHHHHHHh-CCCCceeEEEeecCCCCCC-----------CChHHH-----HHHHHHHHHHHHhc
Q 019395 141 GFQEWGDSNVADTVAVIDFLAARY-ANRPSLAAIELINEPLAPG-----------VALDTL-----KSYYKAGYDAVRKY 203 (341)
Q Consensus 141 ~~~~w~~~~~~~~~~~~~~la~~y-~~~~~v~~~el~NEP~~~~-----------~~~~~~-----~~~~~~~~~aIR~~ 203 (341)
. .+.|....++. .+...-..|-=+|||.... .+..++ ..+.+.+++++++.
T Consensus 90 --------v----~~w~~~~~~~~~~~~Gvdg~w~D~~E~~~~~~~~~~~~~~~~~~~~~~hn~y~~~~~~~~~~~~~~~ 157 (265)
T cd06589 90 --------I----REWWAEVVKKLLVSLGVDGFWTDMGEPSPGDGNIFTGGVVGRVKHEEMHNAYPLLYAEATYEALRKN 157 (265)
T ss_pred --------H----HHHHHHHHHHhhccCCCCEEeccCCCCCcCCCccccCCcCCCccHHHHcchhHHHHHHHHHHHHHHh
Confidence 1 33444443332 2322112244589987521 111122 23456667888888
Q ss_pred C-CCceEEEe
Q 019395 204 T-STAYVIMS 212 (341)
Q Consensus 204 ~-p~~~v~~~ 212 (341)
. ..+++++.
T Consensus 158 ~~~~r~~~~s 167 (265)
T cd06589 158 SKNKRPFILS 167 (265)
T ss_pred cCCCCeEEEE
Confidence 6 45667766
No 161
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=71.50 E-value=9.1 Score=36.25 Aligned_cols=60 Identities=18% Similarity=0.096 Sum_probs=42.0
Q ss_pred CHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEec
Q 019395 64 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDL 123 (341)
Q Consensus 64 ~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildl 123 (341)
.++|++.+.+.|+..||+.++-........-..-.++.++.+.++|+.|+++|+.|.+.+
T Consensus 74 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ 133 (365)
T TIGR02660 74 RDADIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGG 133 (365)
T ss_pred CHHHHHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEee
Confidence 589999999999999999775321100000001124568889999999999999988754
No 162
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=70.86 E-value=5.2 Score=37.60 Aligned_cols=61 Identities=11% Similarity=-0.081 Sum_probs=43.8
Q ss_pred CHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecC
Q 019395 64 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 124 (341)
Q Consensus 64 ~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh 124 (341)
+.+|++...+.|+..|++.++-........-..-.++.++.+.++|+.|+++|+.|.+.+-
T Consensus 123 n~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is 183 (347)
T PLN02746 123 NLKGFEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVS 183 (347)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEE
Confidence 7999999999999999997653211111010111256889999999999999999976653
No 163
>KOG1643 consensus Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=70.71 E-value=69 Score=27.61 Aligned_cols=142 Identities=15% Similarity=0.159 Sum_probs=83.7
Q ss_pred CHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCCcc
Q 019395 64 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQ 143 (341)
Q Consensus 64 ~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~ 143 (341)
-|-..+.|+++|+..|=|..+=.+.. + .+.=+.+-+-+..|.+.||+||..+-..--. ..-
T Consensus 75 GEiS~~mlkd~G~~wVIlGHSERR~~-------f-gEsd~~i~~K~~~Al~eGl~ViaCIGE~lee----REa------- 135 (247)
T KOG1643|consen 75 GEISAEMLKDLGAEWVILGHSERRHV-------F-GESDEFIADKTAHALAEGLKVIACIGETLEE----REA------- 135 (247)
T ss_pred CccCHHHHHhCCCCEEEecchhhhhh-------h-CCchHHHHHHHHHHHHcCCeEEEEecccHHh----hhc-------
Confidence 46677889999999998876521111 1 1122456677788999999999987533100 000
Q ss_pred CCchhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCC-----CCChHHHHHHHHHHHHHHHhc---------CCCceE
Q 019395 144 EWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP-----GVALDTLKSYYKAGYDAVRKY---------TSTAYV 209 (341)
Q Consensus 144 ~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~-----~~~~~~~~~~~~~~~~aIR~~---------~p~~~v 209 (341)
....+-..+-++.++++-++-.+|. +.=||.+. ..++++ +|+....||.- ....-|
T Consensus 136 ---G~t~dVv~~Ql~aiad~v~~w~niv---iAYEPVWAIGTGk~atp~Q----aqEVh~~iR~wl~~~vs~~Va~~~RI 205 (247)
T KOG1643|consen 136 ---GKTLDVVFRQLKAIADKVKDWSNIV---IAYEPVWAIGTGKTATPEQ----AQEVHAEIRKWLKSNVSDAVASSTRI 205 (247)
T ss_pred ---CchHHHHHHHHHHHHHhcCCccceE---EEeeceeeecCCCCCCHHH----HHHHHHHHHHHHhhcchhhhhhceEE
Confidence 1445666777888999988877654 55677761 123333 33444444433 233456
Q ss_pred EEeCCCCCCChhhhhhccCCCCcEE
Q 019395 210 IMSNRLGPADHKELLSFASGLSRVV 234 (341)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~v 234 (341)
+.++.-...+-..+.+.++-+..+|
T Consensus 206 iYGGSV~g~N~~el~~~~diDGFLV 230 (247)
T KOG1643|consen 206 IYGGSVNGGNCKELAKKPDIDGFLV 230 (247)
T ss_pred EeccccccccHHHhcccccccceEE
Confidence 6665444445566666654444444
No 164
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=70.61 E-value=8 Score=30.98 Aligned_cols=62 Identities=23% Similarity=0.303 Sum_probs=43.7
Q ss_pred CHHHHHHHHHCCCCEEEcCcccccccCCC-CCCCc-ccchHHHHHHHHHHHHHcCCe-EEEecCCCCC
Q 019395 64 TDEDFKFLSSNGINAVRIPVGWWIANDPT-PPKPF-VGGSSKVLDNAFDWAEKYGVK-VIVDLHAAPG 128 (341)
Q Consensus 64 ~e~d~~~i~~~G~N~VRlpi~~~~~~~~~-~~~~~-~~~~l~~ld~~i~~a~~~gi~-vildlh~~~g 128 (341)
+++.++.|++.|++.|++++.- .++. -...+ ....++.+-+.++.+.+.|+. ++.-+...|+
T Consensus 89 ~~~~l~~l~~~~~~~i~~~l~s---~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~i~~~~~ 153 (166)
T PF04055_consen 89 DEELLDELKKLGVDRIRISLES---LDEESVLRIINRGKSFERVLEALERLKEAGIPRVIIFIVGLPG 153 (166)
T ss_dssp CHHHHHHHHHTTCSEEEEEEBS---SSHHHHHHHHSSTSHHHHHHHHHHHHHHTTSETEEEEEEEBTT
T ss_pred hHHHHHHHHhcCccEEeccccc---CCHHHhhhhhcCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCC
Confidence 4899999999999999998742 1111 00011 134678899999999999998 6666666553
No 165
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=70.32 E-value=92 Score=28.89 Aligned_cols=66 Identities=15% Similarity=-0.021 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHHHHHhCCCC-----ceeEEEeecCCCCC-CCChHHHHHHHHHHHHHHHhcCCCceEEEeCCC
Q 019395 148 SNVADTVAVIDFLAARYANRP-----SLAAIELINEPLAP-GVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRL 215 (341)
Q Consensus 148 ~~~~~~~~~~~~la~~y~~~~-----~v~~~el~NEP~~~-~~~~~~~~~~~~~~~~aIR~~~p~~~v~~~~~~ 215 (341)
..++...+.++.+.+ ++.. ++-+|+..+|+..+ ....+.+.++..++.+.+|+..|+..|+...|+
T Consensus 144 ~W~~il~~rl~~l~~--kGfDGvfLD~lDsy~~~~~~~~~~~~~~~~m~~~i~~Ia~~ar~~~P~~~II~NnG~ 215 (315)
T TIGR01370 144 EWKAIAFSYLDRVIA--QGFDGVYLDLIDAFEYWAENGDNRPGAAAEMIAFVCEIAAYARAQNPQFVIIPQNGE 215 (315)
T ss_pred HHHHHHHHHHHHHHH--cCCCeEeeccchhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHCCCEEEEecCch
Confidence 334444444444433 3333 44556655554321 233467888999999999999999877766543
No 166
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=70.10 E-value=19 Score=33.61 Aligned_cols=58 Identities=10% Similarity=0.243 Sum_probs=39.4
Q ss_pred HHHHHHHHHCCCCEEEcCccc---ccccCC-CC----CC---------CcccchHHHHHHHHHHHHHcCCeEEEecCC
Q 019395 65 DEDFKFLSSNGINAVRIPVGW---WIANDP-TP----PK---------PFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 125 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~---~~~~~~-~~----~~---------~~~~~~l~~ld~~i~~a~~~gi~vildlh~ 125 (341)
.+-++.|+..++|.+-+.+.- |.+.-+ .| .+ .| ..+.++++|+.|+++||.||..+-.
T Consensus 21 k~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~y---T~~di~~lv~yA~~~gI~VIPeid~ 95 (351)
T PF00728_consen 21 KRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYY---TKEDIRELVAYAKERGIEVIPEIDT 95 (351)
T ss_dssp HHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEB---EHHHHHHHHHHHHHTT-EEEEEEEE
T ss_pred HHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccC---CHHHHHHHHHHHHHcCCceeeeccC
Confidence 678889999999999988742 111111 11 00 22 3589999999999999999987754
No 167
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=70.04 E-value=5.2 Score=37.89 Aligned_cols=61 Identities=11% Similarity=0.033 Sum_probs=42.8
Q ss_pred CHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecC
Q 019395 64 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 124 (341)
Q Consensus 64 ~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh 124 (341)
.++|++.+.+.|+..||+.++-........-..-.++.++.+.++|+.|+++|+.|.+.+-
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~e 133 (363)
T TIGR02090 73 LKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAE 133 (363)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 5899999999999999996643211100000011244688999999999999999988763
No 168
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=69.79 E-value=36 Score=33.21 Aligned_cols=58 Identities=14% Similarity=0.237 Sum_probs=40.8
Q ss_pred HHHHHHHHHCCCCEEEcCccc---ccccCC-CC---------------------------------CCCcccchHHHHHH
Q 019395 65 DEDFKFLSSNGINAVRIPVGW---WIANDP-TP---------------------------------PKPFVGGSSKVLDN 107 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~---~~~~~~-~~---------------------------------~~~~~~~~l~~ld~ 107 (341)
++-++.|+..++|.+-+.+.- |.+.-+ .| .+-| .-+.+.+
T Consensus 25 k~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~~~~~~~~~~~~~~~~~g~Y---T~~di~e 101 (445)
T cd06569 25 LKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTCLLPQLGSGPDTNNSGSGYY---SRADYIE 101 (445)
T ss_pred HHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhcccccccccccccccccccccCcccCcccCCcc---CHHHHHH
Confidence 677888899999999998742 122110 00 0012 3689999
Q ss_pred HHHHHHHcCCeEEEecCC
Q 019395 108 AFDWAEKYGVKVIVDLHA 125 (341)
Q Consensus 108 ~i~~a~~~gi~vildlh~ 125 (341)
+|+.|+++||.||..+-.
T Consensus 102 iv~yA~~rgI~VIPEID~ 119 (445)
T cd06569 102 ILKYAKARHIEVIPEIDM 119 (445)
T ss_pred HHHHHHHcCCEEEEccCC
Confidence 999999999999987654
No 169
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=69.77 E-value=8.1 Score=35.68 Aligned_cols=61 Identities=10% Similarity=0.050 Sum_probs=48.6
Q ss_pred CHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCC
Q 019395 64 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPG 128 (341)
Q Consensus 64 ~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g 128 (341)
..-..++|+++|.++|.+-+-|. |......+....+++.++.+.|++.+|--+|.+-.++.
T Consensus 109 ~~ws~~rike~GadavK~Llyy~----pD~~~ein~~k~a~vervg~eC~a~dipf~lE~l~Yd~ 169 (329)
T PRK04161 109 VEWSVKRLKEAGADAVKFLLYYD----VDGDEEINDQKQAYIERIGSECTAEDIPFFLELLTYDE 169 (329)
T ss_pred chhhHHHHHHhCCCeEEEEEEEC----CCCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCC
Confidence 35578899999999999977442 33223455667899999999999999999999998864
No 170
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=69.67 E-value=44 Score=31.97 Aligned_cols=50 Identities=20% Similarity=0.459 Sum_probs=40.5
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCC
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 125 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~ 125 (341)
++||+..++.|++.+=|.+.- + +++ ..+.|..+.+.|++.|.+++|.+--
T Consensus 20 ~~di~~A~~~GIDgFaLNig~-----~---d~~---~~~~l~~a~~AA~~~gFKlf~SfD~ 69 (386)
T PF03659_consen 20 EADIRLAQAAGIDGFALNIGS-----S---DSW---QPDQLADAYQAAEAVGFKLFFSFDM 69 (386)
T ss_pred HHHHHHHHHcCCCEEEEeccc-----C---Ccc---cHHHHHHHHHHHHhcCCEEEEEecc
Confidence 999999999999999997741 1 122 3588999999999999999886654
No 171
>PRK07094 biotin synthase; Provisional
Probab=69.63 E-value=51 Score=30.44 Aligned_cols=128 Identities=17% Similarity=0.109 Sum_probs=68.4
Q ss_pred cCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcc-cchHHHHHHHHHHHHHcCCeEEEecCC-CCCCCCCCCCCCCCC
Q 019395 63 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV-GGSSKVLDNAFDWAEKYGVKVIVDLHA-APGSQNGNEHSATRD 140 (341)
Q Consensus 63 ~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~-~~~l~~ld~~i~~a~~~gi~vildlh~-~~g~~~~~~~~g~~~ 140 (341)
.+++.++.|+++|++.|-+.+. .. ++.-...+. ....+...+.++.+++.|+.|..++-. .||
T Consensus 127 ~~~e~l~~Lk~aG~~~v~~glE--s~-~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpg------------ 191 (323)
T PRK07094 127 RSYEEYKAWKEAGADRYLLRHE--TA-DKELYAKLHPGMSFENRIACLKDLKELGYEVGSGFMVGLPG------------ 191 (323)
T ss_pred CCHHHHHHHHHcCCCEEEeccc--cC-CHHHHHHhCCCCCHHHHHHHHHHHHHcCCeecceEEEECCC------------
Confidence 4689999999999998876552 11 110000000 124677888999999999986554332 221
Q ss_pred CccCCchhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCC--CChHHHHHHHHHHHHHHHhcCCCceEEEeCCC
Q 019395 141 GFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPG--VALDTLKSYYKAGYDAVRKYTSTAYVIMSNRL 215 (341)
Q Consensus 141 ~~~~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~--~~~~~~~~~~~~~~~aIR~~~p~~~v~~~~~~ 215 (341)
.+.+...+.++.+.+ ++- ..+...-+.-.|..+- ...... .-+.+++...|-.-|+..|-...++
T Consensus 192 -------et~ed~~~~l~~l~~-l~~-~~v~~~~~~P~pgTpl~~~~~~~~-~~~~~~~a~~R~~lp~~~i~~~~~~ 258 (323)
T PRK07094 192 -------QTLEDLADDILFLKE-LDL-DMIGIGPFIPHPDTPLKDEKGGSL-ELTLKVLALLRLLLPDANIPATTAL 258 (323)
T ss_pred -------CCHHHHHHHHHHHHh-CCC-CeeeeeccccCCCCCcccCCCCCH-HHHHHHHHHHHHhCcCCCCcccCCc
Confidence 223455555555543 221 1222223444454321 111112 2226777788888888655444444
No 172
>PRK04302 triosephosphate isomerase; Provisional
Probab=69.63 E-value=76 Score=27.62 Aligned_cols=108 Identities=15% Similarity=0.116 Sum_probs=63.0
Q ss_pred CHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCCcc
Q 019395 64 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQ 143 (341)
Q Consensus 64 ~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~ 143 (341)
.+.-++.+++.|++.|=++.+= ... ....+.+.++.|.++||.+|++.|..
T Consensus 74 g~~~~~~l~~~G~~~vii~~se-------r~~-----~~~e~~~~v~~a~~~Gl~~I~~v~~~----------------- 124 (223)
T PRK04302 74 GHILPEAVKDAGAVGTLINHSE-------RRL-----TLADIEAVVERAKKLGLESVVCVNNP----------------- 124 (223)
T ss_pred hhhHHHHHHHcCCCEEEEeccc-------ccc-----CHHHHHHHHHHHHHCCCeEEEEcCCH-----------------
Confidence 3555888889999988664421 001 13458889999999999999977642
Q ss_pred CCchhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCC-hHHHHHHHHHHHHHHHhcCCCceEEEeCCC
Q 019395 144 EWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVA-LDTLKSYYKAGYDAVRKYTSTAYVIMSNRL 215 (341)
Q Consensus 144 ~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~-~~~~~~~~~~~~~aIR~~~p~~~v~~~~~~ 215 (341)
++ .+.+. +..+.+++++..+=- +.+.. ......-.+++++.||+..++.+|+.+++-
T Consensus 125 -------~~----~~~~~---~~~~~~I~~~p~~~i-gt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI 182 (223)
T PRK04302 125 -------ET----SAAAA---ALGPDYVAVEPPELI-GTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGI 182 (223)
T ss_pred -------HH----HHHHh---cCCCCEEEEeCcccc-ccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEECCC
Confidence 11 11111 123456665542211 10111 001223466778889987777888888654
No 173
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=68.68 E-value=63 Score=29.00 Aligned_cols=148 Identities=9% Similarity=0.026 Sum_probs=77.6
Q ss_pred HHHHCCCCEEEcCcccccccCCCC-CCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCCccCCchh
Q 019395 70 FLSSNGINAVRIPVGWWIANDPTP-PKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDS 148 (341)
Q Consensus 70 ~i~~~G~N~VRlpi~~~~~~~~~~-~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~~w~~~ 148 (341)
.+++.|+...-+.++-........ .....+..++.+.+.++.|+..|..+|+ ++.... ..+. . ...
T Consensus 60 ~l~~~gl~i~~~~~~~~~~~~l~~~~~~~r~~~~~~~~~~i~~a~~lG~~~v~-~~~~~~------~~~~---~---~~~ 126 (279)
T TIGR00542 60 AIIETGVRIPSMCLSAHRRFPLGSKDKAVRQQGLEIMEKAIQLARDLGIRTIQ-LAGYDV------YYEE---H---DEE 126 (279)
T ss_pred HHHHcCCCceeeecCCCccCcCCCcCHHHHHHHHHHHHHHHHHHHHhCCCEEE-ecCccc------ccCc---C---CHH
Confidence 456677776655432110000000 0112234688999999999999999875 332100 0000 0 024
Q ss_pred HHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcC-CCceEEEeCCC---CCCChhhhh
Q 019395 149 NVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYT-STAYVIMSNRL---GPADHKELL 224 (341)
Q Consensus 149 ~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~-p~~~v~~~~~~---~~~~~~~~~ 224 (341)
..+.+++.++.+++.-+...-.+++|..+.|.. .+. .++.+.|++++ |+..+.+..+. ...+.....
T Consensus 127 ~~~~~~~~l~~l~~~A~~~Gv~l~lE~~~~~~~--~t~-------~~~~~li~~v~~~~v~~~~D~~h~~~~~~~~~~~i 197 (279)
T TIGR00542 127 TRRRFREGLKEAVELAARAQVTLAVEIMDTPFM--SSI-------SKWLKWDHYLNSPWFTLYPDIGNLSAWDNDVQMEL 197 (279)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEEeeCCCchh--cCH-------HHHHHHHHHcCCCceEEEeCcChhhhccCCHHHHH
Confidence 466778888888887776666788997654432 122 23444566665 55555544321 111222222
Q ss_pred hccCCCCcEEEEeeecCC
Q 019395 225 SFASGLSRVVIDVHYYNL 242 (341)
Q Consensus 225 ~~~~~~~~~v~~~H~Y~~ 242 (341)
.. ....+.-+|.-..
T Consensus 198 ~~---~~~~i~~vHikD~ 212 (279)
T TIGR00542 198 QL---GIDKIVAIHLKDT 212 (279)
T ss_pred HH---hhhhEEEEEeCCC
Confidence 21 2345777787643
No 174
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=68.16 E-value=6.1 Score=35.22 Aligned_cols=61 Identities=15% Similarity=0.091 Sum_probs=43.1
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCC
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 125 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~ 125 (341)
+++++.+++.|+..||++++-...........-.++.++.+.+.++.++++|+.|.+.+-.
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~ 137 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLED 137 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 8999999999999999987532100000000111346888999999999999999998843
No 175
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=67.55 E-value=78 Score=28.01 Aligned_cols=99 Identities=13% Similarity=0.131 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCCccCCchhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCC
Q 019395 101 SSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPL 180 (341)
Q Consensus 101 ~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~ 180 (341)
.++.....|..+++.|++|++.+.....+. ++ ...-.+...+.+++-+..+.++|+ +-|++|-=|+.
T Consensus 49 ~~~~~~~~i~~l~~kG~KVl~sigg~~~~~-~~--------~~~~~~~~~~~fa~~l~~~v~~yg----lDGiDiD~E~~ 115 (255)
T cd06542 49 LLTNKETYIRPLQAKGTKVLLSILGNHLGA-GF--------ANNLSDAAAKAYAKAIVDTVDKYG----LDGVDFDDEYS 115 (255)
T ss_pred hhHHHHHHHHHHhhCCCEEEEEECCCCCCC-Cc--------cccCCHHHHHHHHHHHHHHHHHhC----CCceEEeeeec
Confidence 357778888999999999999987643211 00 000013455666666666667773 44444444543
Q ss_pred CCCC-C-hHHHHHHHHHHHHHHHhcC-C-CceEEEe
Q 019395 181 APGV-A-LDTLKSYYKAGYDAVRKYT-S-TAYVIMS 212 (341)
Q Consensus 181 ~~~~-~-~~~~~~~~~~~~~aIR~~~-p-~~~v~~~ 212 (341)
.... . ...-..-+..+++.+|+.- | +.+|++.
T Consensus 116 ~~~~~~~~~~~~~~~~~lv~~Lr~~~~~~~kllt~~ 151 (255)
T cd06542 116 GYGKNGTSQPSNEAFVRLIKELRKYMGPTDKLLTID 151 (255)
T ss_pred ccCCCCCCcchHHHHHHHHHHHHHHhCcCCcEEEEE
Confidence 2110 0 0112233445566666544 3 5556654
No 176
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=67.22 E-value=7.4 Score=35.28 Aligned_cols=125 Identities=11% Similarity=-0.004 Sum_probs=71.9
Q ss_pred CHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCCcc
Q 019395 64 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQ 143 (341)
Q Consensus 64 ~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~ 143 (341)
+++|++...+.|+..|++.++-........-..-.+..++.+.+.++.++++|+.|.+.+-..-+.. ..+
T Consensus 75 ~~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~----~~~------ 144 (274)
T cd07938 75 NLRGAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCP----YEG------ 144 (274)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCC----CCC------
Confidence 5899999999999999998753211100010111245788899999999999999988765331110 001
Q ss_pred CCchhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCC-CCChHHHHHHHHHHHHHHHhcCCCceEEEeC
Q 019395 144 EWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP-GVALDTLKSYYKAGYDAVRKYTSTAYVIMSN 213 (341)
Q Consensus 144 ~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~-~~~~~~~~~~~~~~~~aIR~~~p~~~v~~~~ 213 (341)
+...+.++++.+.+.+- + .+.++=+..- ...+.+. .++++.+|+.-|+.+|-++.
T Consensus 145 ---~~~~~~~~~~~~~~~~~--G------a~~i~l~DT~G~~~P~~v----~~lv~~l~~~~~~~~i~~H~ 200 (274)
T cd07938 145 ---EVPPERVAEVAERLLDL--G------CDEISLGDTIGVATPAQV----RRLLEAVLERFPDEKLALHF 200 (274)
T ss_pred ---CCCHHHHHHHHHHHHHc--C------CCEEEECCCCCccCHHHH----HHHHHHHHHHCCCCeEEEEE
Confidence 12345666666666541 1 1122222211 1333444 34566666666777777773
No 177
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=66.50 E-value=10 Score=34.97 Aligned_cols=61 Identities=10% Similarity=0.073 Sum_probs=48.3
Q ss_pred CHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCC
Q 019395 64 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPG 128 (341)
Q Consensus 64 ~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g 128 (341)
..-..++|+++|.++|.+-+-|. |..+...+....+++.++.+.|++.+|--+|.+-.++.
T Consensus 107 ~~wS~~rike~GadavK~Llyy~----pD~~~~in~~k~a~vervg~eC~a~dipf~lE~ltY~~ 167 (324)
T PRK12399 107 DDWSAKRIKEEGADAVKFLLYYD----VDEPDEINEQKKAYIERIGSECVAEDIPFFLEILTYDE 167 (324)
T ss_pred chhhHHHHHHhCCCeEEEEEEEC----CCCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeeccC
Confidence 34567899999999999977442 33333455667899999999999999999999988864
No 178
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=66.42 E-value=27 Score=32.77 Aligned_cols=95 Identities=13% Similarity=-0.001 Sum_probs=56.9
Q ss_pred HHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCCccCCc--hhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCC
Q 019395 107 NAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWG--DSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGV 184 (341)
Q Consensus 107 ~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~~w~--~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~ 184 (341)
..++.|+++|++|+-.++..+..... . . ...-. +.....+++-+-.|++.|+= ..+. +++=|.+. ...
T Consensus 50 ~~idaAHknGV~Vlgti~~e~~~~~~-~----~--~~lL~~~~~~~~~~a~kLv~lak~yGf-DGw~-iN~E~~~~-~~~ 119 (339)
T cd06547 50 DWINAAHRNGVPVLGTFIFEWTGQVE-W----L--EDFLKKDEDGSFPVADKLVEVAKYYGF-DGWL-INIETELG-DAE 119 (339)
T ss_pred HHHHHHHhcCCeEEEEEEecCCCchH-H----H--HHHhccCcccchHHHHHHHHHHHHhCC-CceE-eeeeccCC-cHH
Confidence 56789999999999988754321000 0 0 00000 12345666777777877743 3332 33333331 123
Q ss_pred ChHHHHHHHHHHHHHHHhcCCCceEEE
Q 019395 185 ALDTLKSYYKAGYDAVRKYTSTAYVIM 211 (341)
Q Consensus 185 ~~~~~~~~~~~~~~aIR~~~p~~~v~~ 211 (341)
..+.+..|.+.+.+.+++..|+..|+-
T Consensus 120 ~~~~l~~F~~~L~~~~~~~~~~~~v~W 146 (339)
T cd06547 120 KAKRLIAFLRYLKAKLHENVPGSLVIW 146 (339)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCcEEEE
Confidence 567899999999999999888755544
No 179
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=66.01 E-value=9.4 Score=35.21 Aligned_cols=60 Identities=12% Similarity=0.074 Sum_probs=47.9
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCC
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPG 128 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g 128 (341)
.-..++|+++|.++|.+-+-| +|......+....+++.++.+.|++++|--+|.+-.++.
T Consensus 109 ~~s~~rike~GadavK~Llyy----~pD~~~ein~~k~a~vervg~ec~a~dipf~lE~ltYd~ 168 (325)
T TIGR01232 109 EWSAKRLKEQGANAVKFLLYY----DVDDAEEINIQKKAYIERIGSECVAEDIPFFLEVLTYDD 168 (325)
T ss_pred cccHHHHHHhCCCeEEEEEEe----CCCCChHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCC
Confidence 556889999999999997744 232223455568899999999999999999999988864
No 180
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=65.57 E-value=17 Score=32.79 Aligned_cols=49 Identities=12% Similarity=0.048 Sum_probs=40.4
Q ss_pred CHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCC
Q 019395 64 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA 126 (341)
Q Consensus 64 ~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~ 126 (341)
..+|++...+.|+..||+.+.- ..++.+.++++.++++|+.|.+.+-..
T Consensus 84 ~~~~l~~a~~~gv~~iri~~~~--------------~~~~~~~~~i~~ak~~G~~v~~~~~~a 132 (266)
T cd07944 84 DIDLLEPASGSVVDMIRVAFHK--------------HEFDEALPLIKAIKEKGYEVFFNLMAI 132 (266)
T ss_pred CHHHHHHHhcCCcCEEEEeccc--------------ccHHHHHHHHHHHHHCCCeEEEEEEee
Confidence 4688999999999999996521 247889999999999999999887654
No 181
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=65.52 E-value=7.7 Score=36.97 Aligned_cols=60 Identities=17% Similarity=0.091 Sum_probs=43.0
Q ss_pred CHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEec
Q 019395 64 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDL 123 (341)
Q Consensus 64 ~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildl 123 (341)
.++|++...+.|+..||+.++-....-...-..-.++.++.+.++|+.|+++|+.|.++.
T Consensus 77 ~~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ 136 (378)
T PRK11858 77 VKSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSA 136 (378)
T ss_pred CHHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 389999999999999999775322110000011125578999999999999999998874
No 182
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=65.46 E-value=6.4 Score=38.69 Aligned_cols=53 Identities=11% Similarity=0.153 Sum_probs=33.9
Q ss_pred CceEEEeecCCCCCC---C------CCHHHHHHHHHHHHHHHcc--CCCcEEEeccccCCCCCCh
Q 019395 276 PLTFVGEWTCEWNVK---D------ASKQDYQRFANAQLDVYGR--ATFGWAYWAHKCEANHWSL 329 (341)
Q Consensus 276 ~pv~vGE~g~~~~~~---~------~~~~~~~~~~~~~~~~~~~--~~~Gw~~W~~k~~~~~W~~ 329 (341)
+|++|+|-|++.... + ...+.+++++.....+.++ .-.|++.|++-. +-+|..
T Consensus 369 ~pi~ITENG~~~~d~~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~WSl~D-nfEW~~ 432 (469)
T PRK13511 369 KKIYITENGLGYKDEFVDGKTVDDDKRIDYVKQHLEVISDAISDGANVKGYFIWSLMD-VFSWSN 432 (469)
T ss_pred CCEEEecCCcCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccccc-ccchhc
Confidence 579999999863211 1 1123455667777777665 568999999863 345543
No 183
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=65.18 E-value=15 Score=27.61 Aligned_cols=83 Identities=22% Similarity=0.248 Sum_probs=48.9
Q ss_pred hHHHHHHH---HHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCCccCCchhHHHHHHHHHHHHHHHhCCCCceeEEEeec
Q 019395 101 SSKVLDNA---FDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELIN 177 (341)
Q Consensus 101 ~l~~ld~~---i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~N 177 (341)
+++.|.+. ++..++.+++|++|.++..++ .++..|.+++.- .+ .++-.
T Consensus 3 Y~~~l~~~~~~~~~~~~~~~kivvD~~~G~~~-------------------------~~~~~ll~~lg~--~~--~~~n~ 53 (104)
T PF02879_consen 3 YIESLLSFIDILEAIKKSGLKIVVDCMNGAGS-------------------------DILPRLLERLGC--DV--IELNC 53 (104)
T ss_dssp HHHHHHHTSCHHHHHHHTTCEEEEE-TTSTTH-------------------------HHHHHHHHHTTC--EE--EEESS
T ss_pred HHHHHhhhccchhhcccCCCEEEEECCCCHHH-------------------------HHHHHHHHHcCC--cE--EEEec
Confidence 44555554 447789999999998875432 377788887754 22 33444
Q ss_pred CCCC--CC-CChHHHHHHHHHHHHHHHhcCCCceEEEe
Q 019395 178 EPLA--PG-VALDTLKSYYKAGYDAVRKYTSTAYVIMS 212 (341)
Q Consensus 178 EP~~--~~-~~~~~~~~~~~~~~~aIR~~~p~~~v~~~ 212 (341)
+|.. +. ..+....+.++.+.+.+++.+.+.-+.+.
T Consensus 54 ~~d~~f~~~~~p~p~~~~l~~~~~~v~~~~ad~g~~~D 91 (104)
T PF02879_consen 54 DPDPDFPNQHAPNPEEESLQRLIKIVRESGADLGIAFD 91 (104)
T ss_dssp S-STTGTTTSTSSTSTTTTHHHHHHHHHSTTSEEEEE-
T ss_pred ccccccccccccccccchhHHHHHHhhccCceEEEEEC
Confidence 4543 11 11111116677888888888887666654
No 184
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=65.10 E-value=21 Score=32.38 Aligned_cols=122 Identities=16% Similarity=0.228 Sum_probs=66.5
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCCccC
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQE 144 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~~ 144 (341)
++-++..+++|+..|=|--+|.........+......-..|.++|+.|++.|+.|+|=.|.-.+.
T Consensus 35 k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~~~~--------------- 99 (273)
T PF10566_consen 35 KRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSETGG--------------- 99 (273)
T ss_dssp HHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEECCHTT---------------
T ss_pred HHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeCCcch---------------
Confidence 66788889999999999888853221111111112234679999999999999999998876421
Q ss_pred CchhHHHHHHHHHHHHHHHhCCC--CceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCceEEEeCC
Q 019395 145 WGDSNVADTVAVIDFLAARYANR--PSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNR 214 (341)
Q Consensus 145 w~~~~~~~~~~~~~~la~~y~~~--~~v~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~v~~~~~ 214 (341)
...+.+.. .+...++|++- ..|- ++.++- ......++|+++++.--+ -+.+|-++++
T Consensus 100 -~~~~~~~~---~~~~f~~~~~~Gv~GvK-idF~~~------d~Q~~v~~y~~i~~~AA~--~~LmvnfHg~ 158 (273)
T PF10566_consen 100 -NVANLEKQ---LDEAFKLYAKWGVKGVK-IDFMDR------DDQEMVNWYEDILEDAAE--YKLMVNFHGA 158 (273)
T ss_dssp -BHHHHHCC---HHHHHHHHHHCTEEEEE-EE--SS------TSHHHHHHHHHHHHHHHH--TT-EEEETTS
T ss_pred -hhHhHHHH---HHHHHHHHHHcCCCEEe-eCcCCC------CCHHHHHHHHHHHHHHHH--cCcEEEecCC
Confidence 10111111 24455555443 2333 556654 336778888887764332 3445555543
No 185
>PRK06256 biotin synthase; Validated
Probab=65.01 E-value=45 Score=31.01 Aligned_cols=126 Identities=13% Similarity=0.081 Sum_probs=68.3
Q ss_pred cCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcc-cchHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCC
Q 019395 63 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV-GGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDG 141 (341)
Q Consensus 63 ~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~-~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~ 141 (341)
++++.++.|+++|++.|=+.+. . .+.-...+. ...++..-+.++.+++.||.|..++-. |. |
T Consensus 150 l~~e~l~~LkeaG~~~v~~~lE--t--s~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~--Gl-------g---- 212 (336)
T PRK06256 150 LTEEQAERLKEAGVDRYNHNLE--T--SRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGII--GM-------G---- 212 (336)
T ss_pred CCHHHHHHHHHhCCCEEecCCc--c--CHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEE--eC-------C----
Confidence 6899999999999997765431 1 110000111 224677888999999999986554322 11 0
Q ss_pred ccCCchhHHHHHHHHHHHHHHHhCCCCceeEEEeec-CCCCC--CCChHHHHHHHHHHHHHHHhcCCCceEEEeCCC
Q 019395 142 FQEWGDSNVADTVAVIDFLAARYANRPSLAAIELIN-EPLAP--GVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRL 215 (341)
Q Consensus 142 ~~~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~N-EP~~~--~~~~~~~~~~~~~~~~aIR~~~p~~~v~~~~~~ 215 (341)
++.+...+.+..+.+ .+- ..+.+..++ .|..+ ..+..... -+.+++...|-..|+..|.+.++.
T Consensus 213 ------Et~ed~~~~~~~l~~-l~~--~~v~i~~l~P~pGT~l~~~~~~~~~-e~l~~ia~~Rl~~p~~~I~~~~gr 279 (336)
T PRK06256 213 ------ESLEDRVEHAFFLKE-LDA--DSIPINFLNPIPGTPLENHPELTPL-ECLKTIAIFRLINPDKEIRIAGGR 279 (336)
T ss_pred ------CCHHHHHHHHHHHHh-CCC--CEEeecccccCCCCCCCCCCCCCHH-HHHHHHHHHHHHCCCCeeEecCch
Confidence 233455555555542 321 212233332 12211 11111122 234466688999999999887543
No 186
>PLN02998 beta-glucosidase
Probab=64.95 E-value=6.6 Score=38.87 Aligned_cols=48 Identities=13% Similarity=0.156 Sum_probs=32.1
Q ss_pred CCCceEEEeecCCCCCCC-----CCHHHHHHHHHHHHHHHcc--CCCcEEEeccc
Q 019395 274 NGPLTFVGEWTCEWNVKD-----ASKQDYQRFANAQLDVYGR--ATFGWAYWAHK 321 (341)
Q Consensus 274 ~~~pv~vGE~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~--~~~Gw~~W~~k 321 (341)
+.||++|+|-|++....+ ...+.+++++.....+.++ .-.|++.|++-
T Consensus 391 ~~ppI~ITENG~~~~~~g~v~D~~Ri~Yl~~hl~~~~kAi~dGv~V~GY~~WSl~ 445 (497)
T PLN02998 391 GNPPVYILENGQMTPHSSSLVDTTRVKYLSSYIKAVLHSLRKGSDVKGYFQWSLM 445 (497)
T ss_pred CCCCEEEeCCCCccCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccch
Confidence 345799999998653211 1223455667777766655 56899999986
No 187
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=64.11 E-value=8.8 Score=37.78 Aligned_cols=53 Identities=9% Similarity=0.032 Sum_probs=33.8
Q ss_pred hhhccCCCceEEEeecCCCCCC----C-----CCHHHHHHHHHHHHHHHcc--CCCcEEEeccc
Q 019395 269 AVTTSNGPLTFVGEWTCEWNVK----D-----ASKQDYQRFANAQLDVYGR--ATFGWAYWAHK 321 (341)
Q Consensus 269 ~~~~~~~~pv~vGE~g~~~~~~----~-----~~~~~~~~~~~~~~~~~~~--~~~Gw~~W~~k 321 (341)
.+.+..+.||+|.|-|++.... + ...+.+++++.+...+.++ ...|++.|++-
T Consensus 359 ~~~~~Y~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~V~GY~~WSl~ 422 (474)
T PRK09852 359 MMYDRYQKPLFLVENGLGAKDEIAANGEINDDYRISYLREHIRAMGEAIADGIPLMGYTTWGCI 422 (474)
T ss_pred HHHHhcCCCEEEeCCCCCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEeeccc
Confidence 3444456679999999864211 1 1123445666666666655 56899999986
No 188
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=64.04 E-value=24 Score=32.59 Aligned_cols=57 Identities=19% Similarity=0.214 Sum_probs=37.3
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCC----CCCCcccchHHHHHHHHHHHHHcCCeEEEecCC
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPT----PPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 125 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~----~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~ 125 (341)
.+-|+.+++.|+|+.=. -.--+|. -.++|.++.++.|+++++.|+++|+..+..||-
T Consensus 18 ~~l~~f~~~~kmN~YiY----APKdDpyhr~~Wre~Yp~~el~~l~~L~~~a~~~~V~Fv~aisP 78 (306)
T PF07555_consen 18 LDLIRFLGRYKMNTYIY----APKDDPYHRSKWREPYPEEELAELKELADAAKANGVDFVYAISP 78 (306)
T ss_dssp HHHHHHHHHTT--EEEE------TT-TTTTTTTTS---HHHHHHHHHHHHHHHHTT-EEEEEEBG
T ss_pred HHHHHHHHHcCCceEEE----CCCCChHHHhhhcccCCHHHHHHHHHHHHHHHHcCCEEEEEECc
Confidence 56788889999997643 1111111 124666778999999999999999999999994
No 189
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=63.92 E-value=21 Score=34.03 Aligned_cols=55 Identities=24% Similarity=0.292 Sum_probs=42.1
Q ss_pred HHHhhccCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCC
Q 019395 57 DHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 125 (341)
Q Consensus 57 ~~~~~~~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~ 125 (341)
.||...+.+.-++.....|++.+|+ +. .+++ ..-++..++.++++|..|...+.-
T Consensus 93 rhyaDDvVe~Fv~ka~~nGidvfRi---FD-AlND----------~RNl~~ai~a~kk~G~h~q~~i~Y 147 (472)
T COG5016 93 RHYADDVVEKFVEKAAENGIDVFRI---FD-ALND----------VRNLKTAIKAAKKHGAHVQGTISY 147 (472)
T ss_pred cCCchHHHHHHHHHHHhcCCcEEEe---ch-hccc----------hhHHHHHHHHHHhcCceeEEEEEe
Confidence 4777778888889999999999997 11 1211 355889999999999988876653
No 190
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=63.03 E-value=8.9 Score=34.90 Aligned_cols=61 Identities=16% Similarity=0.042 Sum_probs=44.1
Q ss_pred cCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEec
Q 019395 63 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDL 123 (341)
Q Consensus 63 ~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildl 123 (341)
.+.+|++...+.|++.|-+.++-........-..-.++.++.+.++|+.|+++|++|-+.+
T Consensus 75 ~~~~die~A~~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ 135 (279)
T cd07947 75 ANKEDLKLVKEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL 135 (279)
T ss_pred CCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4689999999999999988664321111101111125689999999999999999999887
No 191
>PLN02814 beta-glucosidase
Probab=62.92 E-value=6.7 Score=38.88 Aligned_cols=53 Identities=15% Similarity=0.144 Sum_probs=33.7
Q ss_pred CCceEEEeecCCCCCCC-----CCHHHHHHHHHHHHHHHcc--CCCcEEEeccccCCCCCC
Q 019395 275 GPLTFVGEWTCEWNVKD-----ASKQDYQRFANAQLDVYGR--ATFGWAYWAHKCEANHWS 328 (341)
Q Consensus 275 ~~pv~vGE~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~--~~~Gw~~W~~k~~~~~W~ 328 (341)
.+||+|+|.|++....+ ...+.++++++....+.++ .-.|++.|++-. +-+|.
T Consensus 387 ~ppI~ITENG~~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~dGv~V~GY~~WSllD-nfEW~ 446 (504)
T PLN02814 387 NPPIYILENGMPMKHDSTLQDTPRVEFIQAYIGAVLNAIKNGSDTRGYFVWSMID-LYELL 446 (504)
T ss_pred CCCEEEECCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchh-hhchh
Confidence 56899999998643211 1223455666666666655 568999999863 24443
No 192
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=62.53 E-value=18 Score=32.61 Aligned_cols=123 Identities=14% Similarity=0.189 Sum_probs=69.6
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCCccC
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQE 144 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~~ 144 (341)
++-++..+++|.+.|++..+.... ...........+.+.++++.|+++||++.|-.|..+.. ..
T Consensus 88 ~~~i~~A~~lG~~~v~~~~g~~~~---~~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~~~~~~-----~~-------- 151 (279)
T cd00019 88 KDEIERCEELGIRLLVFHPGSYLG---QSKEEGLKRVIEALNELIDKAETKGVVIALETMAGQGN-----EI-------- 151 (279)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCC---CCHHHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCC-----CC--------
Confidence 778888899999999986654211 01111113356888889999999999998887765321 00
Q ss_pred CchhHHHHHHHHHHHHHHHhCCCCce-eEEEeecCCCCC--CCChHHHHHHHHHHHHHHHhcCCCceEEEe
Q 019395 145 WGDSNVADTVAVIDFLAARYANRPSL-AAIELINEPLAP--GVALDTLKSYYKAGYDAVRKYTSTAYVIMS 212 (341)
Q Consensus 145 w~~~~~~~~~~~~~~la~~y~~~~~v-~~~el~NEP~~~--~~~~~~~~~~~~~~~~aIR~~~p~~~v~~~ 212 (341)
....+.+.++++.+ ...|++ +-+|+.|=-..+ ..+++.+..++......|. ++.+..++
T Consensus 152 --~~t~~~~~~li~~v----~~~~~~g~~lD~~h~~~~g~~~~~~~~~~~~l~~~~~~i~---~~~i~~vH 213 (279)
T cd00019 152 --GSSFEELKEIIDLI----KEKPRVGVCIDTCHIFAAGYDISTVEGFEKVLEEFDKVIG---LEYLKAIH 213 (279)
T ss_pred --CCCHHHHHHHHHhc----CCCCCeEEEEEhhhHHhccCCCCCHHHHHHHHHHHHHHhC---hhheeEEE
Confidence 02233444455444 224544 458888832211 1123456666655544442 34445554
No 193
>PLN02849 beta-glucosidase
Probab=62.01 E-value=7 Score=38.75 Aligned_cols=48 Identities=15% Similarity=0.228 Sum_probs=32.4
Q ss_pred CCCceEEEeecCCCCCC-------CCCHHHHHHHHHHHHHHHcc--CCCcEEEeccc
Q 019395 274 NGPLTFVGEWTCEWNVK-------DASKQDYQRFANAQLDVYGR--ATFGWAYWAHK 321 (341)
Q Consensus 274 ~~~pv~vGE~g~~~~~~-------~~~~~~~~~~~~~~~~~~~~--~~~Gw~~W~~k 321 (341)
+.|||+|+|-|++.... ....+.++.+++....+.++ ...|++.|++-
T Consensus 384 ~~pPi~ITENG~~~~d~~~~~v~D~~Ri~Yl~~hL~~l~~Ai~dGv~V~GY~~WSl~ 440 (503)
T PLN02849 384 GNPPVYILENGTPMKQDLQLQQKDTPRIEYLHAYIGAVLKAVRNGSDTRGYFVWSFM 440 (503)
T ss_pred CCCCEEEeCCCCCccCCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccch
Confidence 34589999999874321 11223456667777777665 57899999986
No 194
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=61.89 E-value=18 Score=32.17 Aligned_cols=59 Identities=10% Similarity=0.054 Sum_probs=40.0
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCC
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 125 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~ 125 (341)
++-++..+.+|...|+++.++.. .+...........+.|.++.+.|+++|+.+.+-.|+
T Consensus 88 ~~~i~~a~~lga~~i~~~~g~~~--~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n 146 (258)
T PRK09997 88 AAAIRYARALGNKKINCLVGKTP--AGFSSEQIHATLVENLRYAANMLMKEDILLLIEPIN 146 (258)
T ss_pred HHHHHHHHHhCCCEEEECCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 67788889999999998765421 110111111234577788899999999998887654
No 195
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=61.68 E-value=50 Score=26.40 Aligned_cols=85 Identities=12% Similarity=0.051 Sum_probs=54.1
Q ss_pred cCCeEEEecCCCCCCCCCCCCCCCCCCccCCchhHHHHHHHHHHHHHHHhC--CCCceeEEEeecCCCCCCCChHHHHHH
Q 019395 115 YGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYA--NRPSLAAIELINEPLAPGVALDTLKSY 192 (341)
Q Consensus 115 ~gi~vildlh~~~g~~~~~~~~g~~~~~~~w~~~~~~~~~~~~~~la~~y~--~~~~v~~~el~NEP~~~~~~~~~~~~~ 192 (341)
....+|+..|+.|-..-. .| +.+.+...+..+.|+++.. ..+...+|+---=|. +.+...
T Consensus 17 ~~~~llfsaHgiP~~~~~---~g---------d~Y~~~~~~~~~~v~~~l~~~~~~~~~~fqS~~g~~------~Wl~P~ 78 (135)
T cd00419 17 EKDRLLFSAHGLPVRDIK---KG---------DPYPDQCEETARLVAERLGLPFDEYELAYQSRFGPG------EWLEPS 78 (135)
T ss_pred CCCEEEEEcCCCHHHHhh---CC---------CCHHHHHHHHHHHHHHHhCCCCCCEEEEecCCCCCC------CCCCCC
Confidence 578899999999843210 01 2567788888899999887 444556666322121 233344
Q ss_pred HHHHHHHHHhcCCCceEEEeCCCCC
Q 019395 193 YKAGYDAVRKYTSTAYVIMSNRLGP 217 (341)
Q Consensus 193 ~~~~~~aIR~~~p~~~v~~~~~~~~ 217 (341)
..++++.+.+.+-+.++++..+|-+
T Consensus 79 ~~~~l~~l~~~G~~~i~v~p~gF~~ 103 (135)
T cd00419 79 TDDALEELAKEGVKNVVVVPIGFVS 103 (135)
T ss_pred HHHHHHHHHHcCCCeEEEECCcccc
Confidence 5666777777777788887766654
No 196
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=60.78 E-value=1.2e+02 Score=26.97 Aligned_cols=95 Identities=9% Similarity=0.106 Sum_probs=54.0
Q ss_pred HHHHHHCCCCEEEcCccc-c--cccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCCccC
Q 019395 68 FKFLSSNGINAVRIPVGW-W--IANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQE 144 (341)
Q Consensus 68 ~~~i~~~G~N~VRlpi~~-~--~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~~ 144 (341)
-+.+++.|+...=+.++- . .+..+. ....+..++.++++|+.|++.|..+|.- +..+.. .. .
T Consensus 58 ~~~l~~~Gl~i~~~~~~~~~~~~~~~~d--~~~r~~~~~~~~~~i~~a~~lG~~~v~~-~~~~~~------~~-----~- 122 (284)
T PRK13210 58 VKAIYETGVRIPSMCLSGHRRFPFGSRD--PATRERALEIMKKAIRLAQDLGIRTIQL-AGYDVY------YE-----E- 122 (284)
T ss_pred HHHHHHcCCCceEEecccccCcCCCCCC--HHHHHHHHHHHHHHHHHHHHhCCCEEEE-CCcccc------cc-----c-
Confidence 334567788765443221 0 111111 1112457899999999999999998863 322100 00 0
Q ss_pred CchhHHHHHHHHHHHHHHHhCCCCceeEEEeec
Q 019395 145 WGDSNVADTVAVIDFLAARYANRPSLAAIELIN 177 (341)
Q Consensus 145 w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~N 177 (341)
-.+...+.+++.++.+++..+...-.+++|..+
T Consensus 123 ~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~~ 155 (284)
T PRK13210 123 KSEETRQRFIEGLAWAVEQAAAAQVMLAVEIMD 155 (284)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCCEEEEEecC
Confidence 002455677788888877776665556777653
No 197
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=60.15 E-value=62 Score=30.04 Aligned_cols=148 Identities=11% Similarity=0.095 Sum_probs=92.8
Q ss_pred HHHhhccCHHHHHHHHHCCC-CEEEcCccc-ccccCC-------------CCC-------CC-c-ccchHHHHHHHHHH-
Q 019395 57 DHWDSYITDEDFKFLSSNGI-NAVRIPVGW-WIANDP-------------TPP-------KP-F-VGGSSKVLDNAFDW- 111 (341)
Q Consensus 57 ~~~~~~~~e~d~~~i~~~G~-N~VRlpi~~-~~~~~~-------------~~~-------~~-~-~~~~l~~ld~~i~~- 111 (341)
.||+.++ ++-++.|++.|+ +.|=+|+.- +....- .+. .. + .+.+++.+-+.|+.
T Consensus 98 ry~~P~i-~~~v~~l~~~gv~~iv~~pLyPqyS~sTt~s~~~~~~~al~~~~~~~~i~~I~~~~~~p~yI~a~a~~I~~~ 176 (320)
T COG0276 98 RYGPPFI-EEAVEELKKDGVERIVVLPLYPQYSSSTTGSYVDELARALKELRGQPKISTIPDYYDEPLYIEALADSIREK 176 (320)
T ss_pred cCCCCcH-HHHHHHHHHcCCCeEEEEECCcccccccHHHHHHHHHHHHHhcCCCCceEEecCccCChHHHHHHHHHHHHH
Confidence 4555554 799999999999 455566531 111000 000 01 1 23466666666654
Q ss_pred HHHc---CCeEEEecCCCCCCCCCCCCCCCCCCccCCchhHHHHHHHHHHHHHHHhC--CCCceeEEEeecCCCCCCCCh
Q 019395 112 AEKY---GVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYA--NRPSLAAIELINEPLAPGVAL 186 (341)
Q Consensus 112 a~~~---gi~vildlh~~~g~~~~~~~~g~~~~~~~w~~~~~~~~~~~~~~la~~y~--~~~~v~~~el~NEP~~~~~~~ 186 (341)
..++ +..+|++.|+.|-+.... | +.+.++..+..+.|+++.+ .....++|+--.=|.
T Consensus 177 ~~~~~~~~~~llfSaHglP~~~~~~---G---------DpY~~q~~~t~~li~e~lg~~~~~~~~~~QS~~G~~------ 238 (320)
T COG0276 177 LAKHPRDDDVLLFSAHGLPKRYIDE---G---------DPYPQQCQETTRLIAEALGLPEEEYDLTFQSRFGPE------ 238 (320)
T ss_pred HHhcCCCCeEEEEecCCCchhhhhc---C---------CchHHHHHHHHHHHHHHcCCCchheeEEeecCCCCC------
Confidence 4454 589999999998543211 1 2466777788888888887 556678888744333
Q ss_pred HHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCChhhh
Q 019395 187 DTLKSYYKAGYDAVRKYTSTAYVIMSNRLGPADHKEL 223 (341)
Q Consensus 187 ~~~~~~~~~~~~aIR~~~p~~~v~~~~~~~~~~~~~~ 223 (341)
+.+....++.++.+.+.+.++++++..+|-+...+.+
T Consensus 239 ~WL~P~t~~~l~~L~~~g~k~iiv~pigFvsDhlETL 275 (320)
T COG0276 239 PWLQPYTDDLLEELGEKGVKKIIVVPIGFVSDHLETL 275 (320)
T ss_pred CCCCCCHHHHHHHHHhcCCCeEEEECCchhhhhHHHH
Confidence 3566677778888888888888988877765444444
No 198
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=59.49 E-value=1.3e+02 Score=26.87 Aligned_cols=148 Identities=9% Similarity=0.017 Sum_probs=76.8
Q ss_pred HHHHHCCCCEEEcCcccccccCCCCCC-CcccchHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCCccCCch
Q 019395 69 KFLSSNGINAVRIPVGWWIANDPTPPK-PFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGD 147 (341)
Q Consensus 69 ~~i~~~G~N~VRlpi~~~~~~~~~~~~-~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~~w~~ 147 (341)
+.+++.|+...=+..+......+...+ ...+..++.+++.|+.|++.|..+|. ++..+.. .+ . -.+
T Consensus 64 ~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~i~-~~~~~~~------~~----~--~~~ 130 (283)
T PRK13209 64 NALVETGFRVNSMCLSAHRRFPLGSEDDAVRAQALEIMRKAIQLAQDLGIRVIQ-LAGYDVY------YE----Q--ANN 130 (283)
T ss_pred HHHHHcCCceeEEecccccccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEE-ECCcccc------cc----c--cHH
Confidence 344577887655432210001111111 11234688999999999999999775 4432100 00 0 003
Q ss_pred hHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcC-CCceEEEeCCCC---CCChhhh
Q 019395 148 SNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYT-STAYVIMSNRLG---PADHKEL 223 (341)
Q Consensus 148 ~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~-p~~~v~~~~~~~---~~~~~~~ 223 (341)
...+.+++.++.+++.-+...-.+++|..+.+.. .+ ..++.+.+++++ |+.-+.+..+.. ..+....
T Consensus 131 ~~~~~~~~~l~~l~~~A~~~GV~i~iE~~~~~~~--~~-------~~~~~~ll~~v~~~~lgl~~D~~h~~~~~~~~~~~ 201 (283)
T PRK13209 131 ETRRRFIDGLKESVELASRASVTLAFEIMDTPFM--NS-------ISKALGYAHYLNSPWFQLYPDIGNLSAWDNDVQME 201 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCEEEEeecCCccc--CC-------HHHHHHHHHHhCCCccceEeccchHHHhcCCHHHH
Confidence 4556777777777776655556677887643321 12 224566667766 555565553211 1122222
Q ss_pred hhccCCCCcEEEEeeecC
Q 019395 224 LSFASGLSRVVIDVHYYN 241 (341)
Q Consensus 224 ~~~~~~~~~~v~~~H~Y~ 241 (341)
.. ....-+..+|.-.
T Consensus 202 i~---~~~~~i~~vHikD 216 (283)
T PRK13209 202 LQ---AGIGHIVAFHVKD 216 (283)
T ss_pred HH---hCcCcEEEEEecc
Confidence 22 2334577777764
No 199
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=59.25 E-value=10 Score=37.28 Aligned_cols=60 Identities=7% Similarity=-0.133 Sum_probs=37.4
Q ss_pred hhhccCCCceEEEeecCCCCC----CC-----CCHHHHHHHHHHHHHHH-cc--CCCcEEEeccccCCCCCCh
Q 019395 269 AVTTSNGPLTFVGEWTCEWNV----KD-----ASKQDYQRFANAQLDVY-GR--ATFGWAYWAHKCEANHWSL 329 (341)
Q Consensus 269 ~~~~~~~~pv~vGE~g~~~~~----~~-----~~~~~~~~~~~~~~~~~-~~--~~~Gw~~W~~k~~~~~W~~ 329 (341)
.+.+..+.|++|+|-|++... ++ ...+.+++++.....+. ++ ...|++.|++-. +-+|..
T Consensus 361 ~~~~~Y~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~~dGv~V~GY~~WSl~D-n~Ew~~ 432 (476)
T PRK09589 361 WFWDHYQLPLFIVENGFGAIDQREADGTVNDHYRIDYLAAHIREMKKAVVEDGVDLMGYTPWGCID-LVSAGT 432 (476)
T ss_pred HHHHhcCCCEEEEeCCcccCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeccccc-cccccC
Confidence 334445567999999987421 11 11234567777777776 44 578999999863 345543
No 200
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=58.97 E-value=11 Score=37.08 Aligned_cols=53 Identities=8% Similarity=-0.005 Sum_probs=34.9
Q ss_pred hhhccCCCceEEEeecCCCCC----CC-----CCHHHHHHHHHHHHHHHc-c--CCCcEEEeccc
Q 019395 269 AVTTSNGPLTFVGEWTCEWNV----KD-----ASKQDYQRFANAQLDVYG-R--ATFGWAYWAHK 321 (341)
Q Consensus 269 ~~~~~~~~pv~vGE~g~~~~~----~~-----~~~~~~~~~~~~~~~~~~-~--~~~Gw~~W~~k 321 (341)
.+.+..+.||+|+|-|++... .+ ...+.+++++.....+.+ + .-.|++.|++-
T Consensus 362 ~~~~~Y~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~~dGv~v~GY~~WSl~ 426 (477)
T PRK15014 362 ELYERYQKPLFIVENGFGAYDKVEEDGSINDDYRIDYLRAHIEEMKKAVTYDGVDLMGYTPWGCI 426 (477)
T ss_pred HHHHhcCCCEEEeCCCCCCCCCcCcCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccch
Confidence 344455667999999987421 11 122345677777777773 4 56899999986
No 201
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=58.73 E-value=33 Score=30.66 Aligned_cols=59 Identities=15% Similarity=0.186 Sum_probs=40.9
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCC
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 125 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~ 125 (341)
++-++..+.+|..+|+++-...... . ..+...+...+.|+++.+.|+++||++.+-.|.
T Consensus 93 ~~~i~~a~~lGa~~i~~~~~~~~~~-~-~~~~~~~~~~~~l~~l~~~a~~~gv~l~iE~~~ 151 (275)
T PRK09856 93 KLAMDMAKEMNAGYTLISAAHAGYL-T-PPNVIWGRLAENLSELCEYAENIGMDLILEPLT 151 (275)
T ss_pred HHHHHHHHHhCCCEEEEcCCCCCCC-C-CHHHHHHHHHHHHHHHHHHHHHcCCEEEEecCC
Confidence 6778888999999999954321110 1 111112346778899999999999998887664
No 202
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=58.39 E-value=21 Score=31.62 Aligned_cols=59 Identities=14% Similarity=0.124 Sum_probs=40.1
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCC
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 125 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~ 125 (341)
++-++..+.+|...||+..+... ...+.....+...+.+.++.+.|+++||.+.+-.|.
T Consensus 87 ~~~i~~a~~lg~~~i~~~~g~~~--~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~ 145 (254)
T TIGR03234 87 ALAIAYARALGCPQVNCLAGKRP--AGVSPEEARATLVENLRYAADALDRIGLTLLIEPIN 145 (254)
T ss_pred HHHHHHHHHhCCCEEEECcCCCC--CCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 56788889999999998654310 000001111234577888999999999999998764
No 203
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=58.37 E-value=8.6 Score=37.77 Aligned_cols=52 Identities=12% Similarity=0.192 Sum_probs=33.1
Q ss_pred CceEEEeecCCCCC---CC-----CCHHHHHHHHHHHHHHHcc--CCCcEEEeccccCCCCCC
Q 019395 276 PLTFVGEWTCEWNV---KD-----ASKQDYQRFANAQLDVYGR--ATFGWAYWAHKCEANHWS 328 (341)
Q Consensus 276 ~pv~vGE~g~~~~~---~~-----~~~~~~~~~~~~~~~~~~~--~~~Gw~~W~~k~~~~~W~ 328 (341)
|||+|+|-|++... .+ ...+.+++++.....+.++ ...|++.|++-. +-+|.
T Consensus 368 ppi~ItENG~~~~d~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~v~GY~~WSl~D-n~Ew~ 429 (467)
T TIGR01233 368 KKIYITENGLGYKDEFVDNTVYDDGRIDYVKQHLEVLSDAIADGANVKGYFIWSLMD-VFSWS 429 (467)
T ss_pred CCEEEeCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchh-hhchh
Confidence 47999999987421 11 1223455667766666655 568999999863 24443
No 204
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=58.33 E-value=1.3e+02 Score=26.62 Aligned_cols=54 Identities=15% Similarity=0.137 Sum_probs=39.4
Q ss_pred CHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCC
Q 019395 64 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 125 (341)
Q Consensus 64 ~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~ 125 (341)
-|--.+.|+++|++.|=|..+=. . .+-.+.-+.+.+-+..|.++||.+|+.+-.
T Consensus 73 GevS~~mL~d~G~~~viiGHSER-------R-~~f~Et~~~i~~Kv~~a~~~gl~pIvCiGE 126 (242)
T cd00311 73 GEISAEMLKDAGAKYVIIGHSER-------R-QYFGETDEDVAKKVKAALEAGLTPILCVGE 126 (242)
T ss_pred CcCCHHHHHHcCCCEEEeCcccc-------c-CcCCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 35667889999999998865421 1 111234578889999999999999998653
No 205
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=57.96 E-value=12 Score=36.84 Aligned_cols=57 Identities=12% Similarity=-0.006 Sum_probs=36.2
Q ss_pred hhccCCCceEEEeecCCCCCC----C-----CCHHHHHHHHHHHHHHHc-c--CCCcEEEeccccCCCCC
Q 019395 270 VTTSNGPLTFVGEWTCEWNVK----D-----ASKQDYQRFANAQLDVYG-R--ATFGWAYWAHKCEANHW 327 (341)
Q Consensus 270 ~~~~~~~pv~vGE~g~~~~~~----~-----~~~~~~~~~~~~~~~~~~-~--~~~Gw~~W~~k~~~~~W 327 (341)
+.+..+.||+|+|-|++.... + ...+.++.++.....+.+ + ...|++.|++-. +-+|
T Consensus 363 ~~~~Y~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~yl~~hl~~~~~Ai~~dGv~v~GY~~WSl~D-n~EW 431 (478)
T PRK09593 363 IWDRYQKPMFIVENGLGAVDKPDENGYVEDDYRIDYLAAHIKAMRDAINEDGVELLGYTTWGCID-LVSA 431 (478)
T ss_pred HHHHcCCCEEEEcCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchH-hhcc
Confidence 334445679999999864211 0 112345677777777773 3 568999999863 2444
No 206
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=57.85 E-value=21 Score=33.44 Aligned_cols=59 Identities=8% Similarity=0.133 Sum_probs=44.0
Q ss_pred HHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCC
Q 019395 66 EDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPG 128 (341)
Q Consensus 66 ~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g 128 (341)
-..+.++++|.++|-+-+.|- +..........++.|.++.+.|+++||-+++-+-.++.
T Consensus 110 ~sve~a~~~GAdAVk~lv~~~----~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~l~y~~ 168 (340)
T PRK12858 110 WSVRRIKEAGADAVKLLLYYR----PDEDDAINDRKHAFVERVGAECRANDIPFFLEPLTYDG 168 (340)
T ss_pred ccHHHHHHcCCCEEEEEEEeC----CCcchHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCC
Confidence 346779999999999988652 22111223567899999999999999999998655543
No 207
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=57.57 E-value=1.4e+02 Score=26.82 Aligned_cols=94 Identities=14% Similarity=0.187 Sum_probs=59.8
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCC---eEEEecCCCCCCCCCCCCCCCCCC
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGV---KVIVDLHAAPGSQNGNEHSATRDG 141 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi---~vildlh~~~g~~~~~~~~g~~~~ 141 (341)
++-+..+++.|...|=++..- ...|. -.++.++.+.+.++.|.++|+ .+|+|.-..|-+.+
T Consensus 106 ~~~~~l~~~~g~~vv~m~~~~--~g~P~----t~~~~~~~l~~~v~~a~~~GI~~~~IilDPgi~~~~~~---------- 169 (261)
T PRK07535 106 EVVLPLVKKYNAPVVALTMDD--TGIPK----DAEDRLAVAKELVEKADEYGIPPEDIYIDPLVLPLSAA---------- 169 (261)
T ss_pred HHHHHHHHHhCCCEEEEecCC--CCCCC----CHHHHHHHHHHHHHHHHHcCCCHhHEEEeCCCCcccCC----------
Confidence 344667788899888776531 11111 113458889999999999999 89999655431100
Q ss_pred ccCCchhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCC
Q 019395 142 FQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLA 181 (341)
Q Consensus 142 ~~~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~ 181 (341)
....-..++.++.+.+.|.+.|.++| +-|=-.+
T Consensus 170 -----~~~~~~~l~~i~~l~~~~pg~p~l~G--~Sn~Sfg 202 (261)
T PRK07535 170 -----QDAGPEVLETIRRIKELYPKVHTTCG--LSNISFG 202 (261)
T ss_pred -----hHHHHHHHHHHHHHHHhCCCCCEEEE--eCCCccC
Confidence 01122445667777777767787777 7776553
No 208
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=57.57 E-value=26 Score=31.54 Aligned_cols=60 Identities=10% Similarity=-0.006 Sum_probs=39.9
Q ss_pred CHHHHHHHHHCC----CCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEec
Q 019395 64 TDEDFKFLSSNG----INAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDL 123 (341)
Q Consensus 64 ~e~d~~~i~~~G----~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildl 123 (341)
...|++...+.| ++.||+.++-...........-.++.++.+.++++.|+++|+.|.+.+
T Consensus 71 ~~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 134 (268)
T cd07940 71 VKKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSA 134 (268)
T ss_pred CHhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEee
Confidence 489999999988 999999654211100000001113468889999999999999988643
No 209
>PRK14567 triosephosphate isomerase; Provisional
Probab=57.48 E-value=1.4e+02 Score=26.67 Aligned_cols=54 Identities=11% Similarity=0.042 Sum_probs=37.8
Q ss_pred CHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCC
Q 019395 64 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 125 (341)
Q Consensus 64 ~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~ 125 (341)
-|--...|+++|++.|=|..+=- ...| .+.-+.+.+-++.|.++||.+|+.+-.
T Consensus 74 GEvS~~mLkd~G~~yviiGHSER-------R~~f-~Etd~~v~~Kv~~al~~gl~pI~CiGE 127 (253)
T PRK14567 74 GEISARMLEDIGCDYLLIGHSER-------RSLF-AESDEDVFKKLNKIIDTTITPVVCIGE 127 (253)
T ss_pred CcCCHHHHHHcCCCEEEECcccc-------cCcc-CCCHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 35566788999999998765421 1112 223456778889999999999998653
No 210
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=57.19 E-value=1.3e+02 Score=27.73 Aligned_cols=58 Identities=7% Similarity=0.054 Sum_probs=35.4
Q ss_pred HHHHHHHHCC--CCEEEcCcccccccCCCC--CCCcccchHHHHHHHHHHHHHcCCeEEEecCCC
Q 019395 66 EDFKFLSSNG--INAVRIPVGWWIANDPTP--PKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA 126 (341)
Q Consensus 66 ~d~~~i~~~G--~N~VRlpi~~~~~~~~~~--~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~ 126 (341)
+-++.+++.| +.+|=|-+.|+. ... .-.++++.+....++|+.++++|++|++.+|-.
T Consensus 28 ~~~~~~~~~~iP~d~i~lD~~~~~---~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~ 89 (319)
T cd06591 28 DVAKEYRKRGIPLDVIVQDWFYWP---KQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPT 89 (319)
T ss_pred HHHHHHHHhCCCccEEEEechhhc---CCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCC
Confidence 4444455664 445544443431 111 123455566778899999999999999877633
No 211
>PLN02429 triosephosphate isomerase
Probab=56.82 E-value=1.7e+02 Score=27.20 Aligned_cols=53 Identities=15% Similarity=0.130 Sum_probs=31.1
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCC
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 125 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~ 125 (341)
|--.+.|++.|++.|=|..+= ....+ .+.-+.+.+=+..|.++||.+|+.+-.
T Consensus 137 EVSa~mLkd~Gv~~ViiGHSE-------RR~~f-~Etd~~V~~Kv~~al~~GL~pIvCIGE 189 (315)
T PLN02429 137 EISVEQLKDLGCKWVILGHSE-------RRHVI-GEKDEFIGKKAAYALSEGLGVIACIGE 189 (315)
T ss_pred cCCHHHHHHcCCCEEEeCccc-------cCCCC-CcCHHHHHHHHHHHHHCcCEEEEEcCC
Confidence 444566777777777664431 00111 122344555555699999999998654
No 212
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=56.40 E-value=41 Score=33.34 Aligned_cols=57 Identities=9% Similarity=0.147 Sum_probs=34.5
Q ss_pred CHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcc-cchHHHHHHHHHHHHHcCCeEEEec
Q 019395 64 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV-GGSSKVLDNAFDWAEKYGVKVIVDL 123 (341)
Q Consensus 64 ~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~-~~~l~~ld~~i~~a~~~gi~vildl 123 (341)
+++.++.|+++|++.|-+.+- .. ++..-..+. ....+.+.++|+.++++||.+.+++
T Consensus 286 d~ell~~l~~aG~~~v~iGiE--S~-~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~ 343 (497)
T TIGR02026 286 DADILHLYRRAGLVHISLGTE--AA-AQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQF 343 (497)
T ss_pred CHHHHHHHHHhCCcEEEEccc--cC-CHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEE
Confidence 467788888889886666542 11 110000010 1235677788899999999877764
No 213
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=56.07 E-value=93 Score=29.69 Aligned_cols=100 Identities=15% Similarity=0.121 Sum_probs=57.2
Q ss_pred cchHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCCccCCchhHHHHHHHHHHHHHHHhCCC--CceeEEEee
Q 019395 99 GGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANR--PSLAAIELI 176 (341)
Q Consensus 99 ~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~~w~~~~~~~~~~~~~~la~~y~~~--~~v~~~el~ 176 (341)
+..++++++.|+.|.+.|-..|+-.-+..+. ..... .. .....+.+++.++.+++.-++. .-.+++|.+
T Consensus 111 ~~ai~~~kraId~A~eLGa~~v~v~~G~~g~----~~~~~----~d-~~~a~~~~~e~L~~lae~A~~~G~GV~laLEp~ 181 (382)
T TIGR02631 111 RYALRKVLRNMDLGAELGAETYVVWGGREGA----EYDGA----KD-VRAALDRMREALNLLAAYAEDQGYGLRFALEPK 181 (382)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEccCCCCC----cCccc----cC-HHHHHHHHHHHHHHHHHHHHhhCCCcEEEEccC
Confidence 3568999999999999999865332221111 00000 00 0345677778888887765543 234678877
Q ss_pred -cCCCCCCCChHHHHHHHHHHHHHHHhcC-CCc-eEEEe
Q 019395 177 -NEPLAPGVALDTLKSYYKAGYDAVRKYT-STA-YVIMS 212 (341)
Q Consensus 177 -NEP~~~~~~~~~~~~~~~~~~~aIR~~~-p~~-~v~~~ 212 (341)
|||.. ..+..=...+...|++++ |+. -+.+.
T Consensus 182 p~~~~~-----~~ll~T~~~al~li~~v~~pn~vgl~lD 215 (382)
T TIGR02631 182 PNEPRG-----DILLPTVGHALAFIETLERPELFGLNPE 215 (382)
T ss_pred CCCCCc-----ceecCCHHHHHHHHHHcCCccceeEEEe
Confidence 67753 122333445566677776 442 34444
No 214
>COG1441 MenC O-succinylbenzoate synthase [Coenzyme metabolism]
Probab=55.61 E-value=11 Score=32.92 Aligned_cols=51 Identities=29% Similarity=0.582 Sum_probs=35.3
Q ss_pred HhhccCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEe
Q 019395 59 WDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVD 122 (341)
Q Consensus 59 ~~~~~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vild 122 (341)
|+.-+-|.||..-+.-|+.+|-| .|-..+.+.+..++|+.|+..||..+|.
T Consensus 213 WDEs~readF~~e~e~gv~avVI-------------KPTL~GSl~r~~eli~qAh~lGl~AVIS 263 (321)
T COG1441 213 WDESLREADFAFEAEPGVRAVVI-------------KPTLTGSLQRVRELVQQAHALGLTAVIS 263 (321)
T ss_pred ecchhcccccccccCCCceEEEe-------------cccchhhHHHHHHHHHHHHhcCceeEee
Confidence 44445555555555555555544 1223467999999999999999999885
No 215
>COG3661 AguA Alpha-glucuronidase [Carbohydrate transport and metabolism]
Probab=55.37 E-value=2.1e+02 Score=27.90 Aligned_cols=98 Identities=16% Similarity=0.110 Sum_probs=60.3
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCC--cccchHHHHHHHHHHHHHcCCeEEEecCCC-CCCCCCCCCCCCCCC
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKP--FVGGSSKVLDNAFDWAEKYGVKVIVDLHAA-PGSQNGNEHSATRDG 141 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~--~~~~~l~~ld~~i~~a~~~gi~vildlh~~-~g~~~~~~~~g~~~~ 141 (341)
.+..+.+++.|+|.+-|.= .+-...+. +....+..+..+.+..+.+||+|.|.+.-. |... +|-...
T Consensus 186 kDYAR~laSiGINg~v~NN-----VNvk~~e~~lit~~fl~k~aklAdiFR~YGIK~yLsinfaSP~~l-----GgL~TA 255 (684)
T COG3661 186 KDYARALASIGINGTVLNN-----VNVKKAESYLITAPFLAKAAKLADIFRPYGIKVYLSINFASPMEL-----GGLKTA 255 (684)
T ss_pred HHHHHHHhhcCcceEEecc-----cccchhhhheechHhHHHHHHHHHHhhhccceEEEEeccCCcccc-----CCcCcC
Confidence 4455567899999988731 11111122 334478889999999999999999998654 2211 111111
Q ss_pred ccCCchhHHHHHHHHHHHHHH-HhCCCCceeEEEeec
Q 019395 142 FQEWGDSNVADTVAVIDFLAA-RYANRPSLAAIELIN 177 (341)
Q Consensus 142 ~~~w~~~~~~~~~~~~~~la~-~y~~~~~v~~~el~N 177 (341)
+ ..-++..++|+.-+. -|+--|..-||-+--
T Consensus 256 D-----PLDe~VrawWkeka~~IY~yIPDFGGFLVKA 287 (684)
T COG3661 256 D-----PLDEAVRAWWKEKADEIYKYIPDFGGFLVKA 287 (684)
T ss_pred C-----cccHHHHHHHHHHHHHHHHhcccccceEEec
Confidence 1 223567788887654 577777776665543
No 216
>PRK00979 tetrahydromethanopterin S-methyltransferase subunit H; Provisional
Probab=55.24 E-value=1.2e+02 Score=28.05 Aligned_cols=86 Identities=26% Similarity=0.407 Sum_probs=62.0
Q ss_pred HHHHHHHHHCCCC-EEEcCcccccccCCCCCCCcccchHHHHHH--------HHHHHHHcCCe-EEEecCCCCCCCCCCC
Q 019395 65 DEDFKFLSSNGIN-AVRIPVGWWIANDPTPPKPFVGGSSKVLDN--------AFDWAEKYGVK-VIVDLHAAPGSQNGNE 134 (341)
Q Consensus 65 e~d~~~i~~~G~N-~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~--------~i~~a~~~gi~-vildlh~~~g~~~~~~ 134 (341)
++.|..+++.|+. .|=|.+. +. .|-.++.++.+.+ +++.|.++||. +++|.-..|-+
T Consensus 136 ~eel~llk~yg~aavIvLa~d------~~--~pt~e~Rl~i~~~~~~~~~~gll~~a~~~GI~diliDplVlpvs----- 202 (308)
T PRK00979 136 EEEIEALKESDIKAAIVLAFD------PM--DPSVEGRLKMLEEGGKGQDKGMLPLAEEAGIERPLVDTAVTPLP----- 202 (308)
T ss_pred HHHHHHHHHhCCceEEEEEcC------CC--CCCHHHHHHHHHhccccchHHHHHHHHHcCCCcEEeccCCCcCc-----
Confidence 4668999999977 6666553 21 2223567889999 89999999995 66676655421
Q ss_pred CCCCCCCccCCchhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCC
Q 019395 135 HSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPL 180 (341)
Q Consensus 135 ~~g~~~~~~~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~ 180 (341)
+ ....++.++.+.++| +.|...| +-|=+.
T Consensus 203 --~------------~~~tl~aI~~iK~~~-G~pt~~G--lSNiS~ 231 (308)
T PRK00979 203 --G------------SGAAIRAIFAVKAKF-GYPVGCA--PHNAPS 231 (308)
T ss_pred --c------------HHHHHHHHHHHHHHc-CCCeEEE--EeCCch
Confidence 1 236778888899999 7888888 888775
No 217
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=54.79 E-value=16 Score=32.67 Aligned_cols=58 Identities=9% Similarity=0.020 Sum_probs=46.6
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCC
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAP 127 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~ 127 (341)
+-+.++||+.|.+.|.|-+-|. . .. .+.++.-+.+++++...|++++|--+|.+-.++
T Consensus 114 ~isa~riK~~G~~avK~Lvy~~-~---D~-~e~neqk~a~ierigsec~aedi~f~lE~ltyd 171 (306)
T COG3684 114 KISAKRIKEDGGDAVKFLVYYR-S---DE-DEINEQKLAYIERIGSECHAEDLPFFLEPLTYD 171 (306)
T ss_pred hhCHHHHHHhcccceEEEEEEc-C---Cc-hHHhHHHHHHHHHHHHHhhhcCCceeEeeeecC
Confidence 3456789999999999977552 2 11 245677899999999999999999999988875
No 218
>COG0469 PykF Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=54.74 E-value=30 Score=33.90 Aligned_cols=53 Identities=30% Similarity=0.429 Sum_probs=36.2
Q ss_pred CHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcC--CeEEEecCCC
Q 019395 64 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYG--VKVIVDLHAA 126 (341)
Q Consensus 64 ~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~g--i~vildlh~~ 126 (341)
+++-++.|-++|+|.+||.++.- .+ +..-++++.+=+.+++.| +-+++|+-+.
T Consensus 19 s~e~l~~li~aG~nV~RlNfSHG---------~~-e~h~~~i~~vR~~~~~~~~~vaIl~DlkGP 73 (477)
T COG0469 19 SEEMLEKLIEAGMNVVRLNFSHG---------DH-EEHKKRIDNVREAAEKLGRPVAILLDLKGP 73 (477)
T ss_pred CHHHHHHHHHccCcEEEEecCCC---------Ch-HHHHHHHHHHHHHHHHhCCceEEEEcCCCC
Confidence 48999999999999999988641 11 223455555555555555 5678888754
No 219
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=54.73 E-value=56 Score=29.22 Aligned_cols=55 Identities=13% Similarity=0.129 Sum_probs=40.7
Q ss_pred HHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCC
Q 019395 68 FKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA 126 (341)
Q Consensus 68 ~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~ 126 (341)
.+.++++|++.+|=... -+.+.+..|..-.++-|+.+.+.|++.||.++-+.|..
T Consensus 35 a~~~~~~g~~~~r~g~~----kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~~~Tev~d~ 89 (250)
T PRK13397 35 ASSAKKLGYNYFRGGAY----KPRTSAASFQGLGLQGIRYLHEVCQEFGLLSVSEIMSE 89 (250)
T ss_pred HHHHHHcCCCEEEeccc----CCCCCCcccCCCCHHHHHHHHHHHHHcCCCEEEeeCCH
Confidence 34488999999997541 12333334444467889999999999999999999975
No 220
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=54.34 E-value=43 Score=31.29 Aligned_cols=71 Identities=15% Similarity=0.106 Sum_probs=47.9
Q ss_pred HHHHHHHHHhh-------ccCHHHHHHHHHCCCCEEEcCccccc-ccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEe
Q 019395 51 APQVLQDHWDS-------YITDEDFKFLSSNGINAVRIPVGWWI-ANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVD 122 (341)
Q Consensus 51 ~~~~~~~~~~~-------~~~e~d~~~i~~~G~N~VRlpi~~~~-~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vild 122 (341)
..+.++++|+. -.|.++.+.+.++|++.|++.|+--. .......+ .--..+..+-++.+.++++++.||.|
T Consensus 140 ~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVgiGpGSicttR~~~G-vg~pqltAv~~~a~aa~~~~v~VIaD 218 (343)
T TIGR01305 140 FVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRTKTG-VGYPQLSAVIECADAAHGLKGHIISD 218 (343)
T ss_pred HHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEcccCCCcccCceeCC-CCcCHHHHHHHHHHHhccCCCeEEEc
Confidence 34455666642 24899999999999999999875311 11110000 11136888889999999999999997
No 221
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=54.23 E-value=35 Score=32.02 Aligned_cols=59 Identities=10% Similarity=0.121 Sum_probs=40.8
Q ss_pred ccCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCc--ccchHHHHHHHHHHHHHcCCeEEEec
Q 019395 62 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF--VGGSSKVLDNAFDWAEKYGVKVIVDL 123 (341)
Q Consensus 62 ~~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~--~~~~l~~ld~~i~~a~~~gi~vildl 123 (341)
-++++.++.|++.|++.|.|++.- .++...... ..+.++.+-+.|+.++++|+.|.|..
T Consensus 92 ll~~e~~~~L~~~g~~~v~iSldg---~~~e~~d~~rg~~g~f~~v~~~i~~l~~~g~~v~v~~ 152 (358)
T TIGR02109 92 GLTEARLDALADAGLDHVQLSFQG---VDEALADRIAGYKNAFEQKLAMARAVKAAGLPLTLNF 152 (358)
T ss_pred cCCHHHHHHHHhCCCCEEEEeCcC---CCHHHHHHhcCCccHHHHHHHHHHHHHhCCCceEEEE
Confidence 367899999999999999998842 111000011 12357788888899999999877654
No 222
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=54.00 E-value=2e+02 Score=27.38 Aligned_cols=119 Identities=15% Similarity=0.128 Sum_probs=71.0
Q ss_pred cCHHHHHHHHHCCCCEEEcCccc-ccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCC
Q 019395 63 ITDEDFKFLSSNGINAVRIPVGW-WIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDG 141 (341)
Q Consensus 63 ~~e~d~~~i~~~G~N~VRlpi~~-~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~ 141 (341)
++++..+.+++.|+ .|=|++.= ...-+-.....--.+.++++-+.|+.++++++.+.+-.-..
T Consensus 102 L~~e~~e~l~~~~~-~IgISiDGp~eihD~~R~~~~GkgTfd~i~~~i~~L~~~~v~~~~~~vv~--------------- 165 (378)
T COG0641 102 LNDEWAEFLAEHDF-LIGISIDGPEEIHDKYRVTKSGKGTFDRVMKGLELLQAHGVDFNTLTVVN--------------- 165 (378)
T ss_pred cCHHHHHHHHhcCc-eEEEeccCchHhccccccCCCCCccHHHHHHHHHHHHHcCCcEEEEEEEc---------------
Confidence 57888999999999 88887742 11111111111113468999999999999998743322211
Q ss_pred ccCCchhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCC------CCChHHHHHHHHHHHHHHHhcC
Q 019395 142 FQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAP------GVALDTLKSYYKAGYDAVRKYT 204 (341)
Q Consensus 142 ~~~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~------~~~~~~~~~~~~~~~~aIR~~~ 204 (341)
+.+.++..++.+.+.+.. ...+-.+.++...... ..+...+.+|+.+..+..+..+
T Consensus 166 -----~~n~~~~~ei~~~l~~~g--~~~i~fip~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~ 227 (378)
T COG0641 166 -----RQNVLHPEEIYHFLKSEG--SKFIQFIPLVESDNRGDSLLEFSVTAEEYGQFLIAIFDEWVRHD 227 (378)
T ss_pred -----hhHhhCHHHHHHHHHHcc--cceEEEEecccCCCCCccccccccCHHHHHHHHHHHHHHHHHhc
Confidence 133445555666665533 2223223343333321 2456789999999999988887
No 223
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=53.79 E-value=1.9e+02 Score=27.00 Aligned_cols=59 Identities=14% Similarity=-0.004 Sum_probs=35.6
Q ss_pred HHHHHHHHHCCCC--EEEcCcccccccCCCCCCCcccchHHHH--HHHHHHHHHcCCeEEEecCCC
Q 019395 65 DEDFKFLSSNGIN--AVRIPVGWWIANDPTPPKPFVGGSSKVL--DNAFDWAEKYGVKVIVDLHAA 126 (341)
Q Consensus 65 e~d~~~i~~~G~N--~VRlpi~~~~~~~~~~~~~~~~~~l~~l--d~~i~~a~~~gi~vildlh~~ 126 (341)
++.++.+++.||. +|=|-+.|+. ....-.++++.+... +++|+.+++.|++|++-++-.
T Consensus 27 ~~~~~~~r~~~iP~d~i~lD~~~~~---~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~ 89 (339)
T cd06602 27 KEVVENMRAAGIPLDVQWNDIDYMD---RRRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPA 89 (339)
T ss_pred HHHHHHHHHhCCCcceEEECccccc---CccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCc
Confidence 3455566666643 4444444431 111123444455556 899999999999999877644
No 224
>KOG1066 consensus Glucosidase II catalytic (alpha) subunit and related enzymes, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=53.70 E-value=43 Score=34.33 Aligned_cols=120 Identities=19% Similarity=0.230 Sum_probs=64.0
Q ss_pred hccCHHHHHHHHHCCCCEEEcCccc-ccccCCCCCC---CcccchHHHHHHHHHHH--HHcCCeEEEecCCCCCC-----
Q 019395 61 SYITDEDFKFLSSNGINAVRIPVGW-WIANDPTPPK---PFVGGSSKVLDNAFDWA--EKYGVKVIVDLHAAPGS----- 129 (341)
Q Consensus 61 ~~~~e~d~~~i~~~G~N~VRlpi~~-~~~~~~~~~~---~~~~~~l~~ld~~i~~a--~~~gi~vildlh~~~g~----- 129 (341)
+|..|+|.... +.||+-.-||..- |.-++-+.+. .+++..+-.=.++++.+ +.+.|-||||.|--..+
T Consensus 367 NY~DE~DV~~V-d~~FDehdiP~DviWLDIEhtdgKrYFTWDk~~FP~P~~Ml~kLa~kgRklV~IvDPHIKkD~~Y~v~ 445 (915)
T KOG1066|consen 367 NYNDEEDVLTV-DQGFDEHDIPYDVIWLDIEHTDGKRYFTWDKHKFPNPKDMLKKLASKGRKLVTIVDPHIKKDDGYFVH 445 (915)
T ss_pred cccchhhhhhh-hcCccccCCccceEEEeeeecCCceeEeeccccCCCHHHHHHHHHhcCCceEEEeCcccccCCCeEEh
Confidence 67778888765 5689999898853 4444333322 22322233333444443 45667899999954321
Q ss_pred ------------CCCCCCCCCC-CCccCCchhHHHHHHHHHHHHH--HHhCCC-CceeEEEeecCCCC
Q 019395 130 ------------QNGNEHSATR-DGFQEWGDSNVADTVAVIDFLA--ARYANR-PSLAAIELINEPLA 181 (341)
Q Consensus 130 ------------~~~~~~~g~~-~~~~~w~~~~~~~~~~~~~~la--~~y~~~-~~v~~~el~NEP~~ 181 (341)
.+|.++-|.| +|...|-+..-....++|+... .+|.+. +++..|.=||||..
T Consensus 446 ke~~~~gy~VKd~~G~DyeG~CWPG~S~yiDf~nP~~r~wW~~~fafd~y~g~t~nl~iWNDMNEPSV 513 (915)
T KOG1066|consen 446 KEAKDKGYYVKDRDGSDYEGWCWPGSSSYIDFINPEARKWWKSQFAFDRYEGSTPNLFIWNDMNEPSV 513 (915)
T ss_pred HHhhhCCeEEEecCCCcccccccCCCcccccccCHHHHHHHhhhcccccccCCCCceEEeccCCCccc
Confidence 1222222221 1111121111123334555443 466554 56988999999985
No 225
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=53.53 E-value=1.5e+02 Score=26.22 Aligned_cols=131 Identities=15% Similarity=0.097 Sum_probs=66.2
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCCccC
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQE 144 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~~ 144 (341)
++--+.+++.|+...-+....-.+..+.+. .. ...++.+.++++.|.+.|..+++.............
T Consensus 48 ~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~i~~a~~lg~~~vv~~~g~~~~~~~~~---------- 115 (274)
T COG1082 48 AELKELLADYGLEITSLAPFSNNLLSPDEE-ER-EEALEELKRAIELAKELGAKVVVVHPGLGAGADDPD---------- 115 (274)
T ss_pred HHHHHHHHHcCcEEEeecccCCCcCCCchh-hH-HHHHHHHHHHHHHHHHcCCCeEEeecccCCcCCCCC----------
Confidence 344445677888877643321112222111 11 346888889999999999998887665432211100
Q ss_pred CchhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCC-CceEEEeCC
Q 019395 145 WGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTS-TAYVIMSNR 214 (341)
Q Consensus 145 w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p-~~~v~~~~~ 214 (341)
+.....+.+.+.++.++..-+.. ++.+.+||+. ......... ...+..|++++. +..+++..+
T Consensus 116 ~~~~~~~~~~~~l~~l~~~a~~~----~i~l~~e~~~--~~~~~~~~~-~~~~~~~~~~~~~~v~~~lD~~ 179 (274)
T COG1082 116 SPEEARERWAEALEELAEIAEEL----GIGLALENHH--HPGNVVETG-ADALDLLREVDSPNVGLLLDTG 179 (274)
T ss_pred CCcccHHHHHHHHHHHHHHHHHh----CCceEEeecC--CccceeecC-HHHHHHHHhcCCCceEEEEecC
Confidence 11122245555555555543333 2234455421 111122233 456677777764 455666543
No 226
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=53.37 E-value=32 Score=32.59 Aligned_cols=58 Identities=12% Similarity=0.203 Sum_probs=40.6
Q ss_pred cCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCc--ccchHHHHHHHHHHHHHcCCeEEEec
Q 019395 63 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF--VGGSSKVLDNAFDWAEKYGVKVIVDL 123 (341)
Q Consensus 63 ~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~--~~~~l~~ld~~i~~a~~~gi~vildl 123 (341)
++++.++.|++.|++.|+|++.- .++...+.+ ..+.++.+-+.|+.++++|+.|.|..
T Consensus 102 l~~~~~~~L~~~g~~~v~iSldg---~~~e~~d~irg~~g~f~~~~~~i~~l~~~g~~v~i~~ 161 (378)
T PRK05301 102 LTEARLAALKDAGLDHIQLSFQD---SDPELNDRLAGTKGAFAKKLAVARLVKAHGYPLTLNA 161 (378)
T ss_pred CCHHHHHHHHHcCCCEEEEEecC---CCHHHHHHHcCCCchHHHHHHHHHHHHHCCCceEEEE
Confidence 67899999999999999998842 111000001 12357888888999999999977654
No 227
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=52.95 E-value=1.6e+02 Score=29.70 Aligned_cols=107 Identities=15% Similarity=0.274 Sum_probs=69.6
Q ss_pred HHHHHHHhhccCHHHHHHHHHCCC---------CEEEcCc------ccccccCCCCCCCcccchHHHHHHHHHHHHHcCC
Q 019395 53 QVLQDHWDSYITDEDFKFLSSNGI---------NAVRIPV------GWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGV 117 (341)
Q Consensus 53 ~~~~~~~~~~~~e~d~~~i~~~G~---------N~VRlpi------~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi 117 (341)
.-+..-|.+|+..+..+.+..-|+ ..|=|.. ++|...... .| ...++.+...++.+++.|.
T Consensus 284 ~~~~~~W~~wlp~e~~~t~~kga~Y~~~~~~Glr~IslNt~~c~~~N~~L~~n~t--dp--~~~lqWf~~~L~~ae~~Ge 359 (577)
T KOG3770|consen 284 KHLAGAWSTWLPAEAKETFLKGAYYLVLVIDGLRLISLNTNYCSAPNFWLYANQT--DP--IDQLQWFVDQLQEAESAGE 359 (577)
T ss_pred HHHHhhhhccCCHHHHhhhhcCcEEEEeecCCceEEEeccccccccceeeeecCC--Cc--hHHhhHHHHHHHHHHhcCC
Confidence 346677999999888888866554 3333322 233333222 22 2359999999999999999
Q ss_pred eEEEecCCCCCCCCCCCCCCCCCCccCCchhHHHHHHHHHHHHHHHhCCCCceeE
Q 019395 118 KVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAA 172 (341)
Q Consensus 118 ~vildlh~~~g~~~~~~~~g~~~~~~~w~~~~~~~~~~~~~~la~~y~~~~~v~~ 172 (341)
+|-|=.|..||... -...|.........++-+.++.+|-+++++--
T Consensus 360 kVhil~HIPpG~~~---------c~~~ws~~f~~iv~r~~~tI~gqf~GH~h~d~ 405 (577)
T KOG3770|consen 360 KVHILGHIPPGDGV---------CLEGWSINFYRIVNRFRSTIAGQFYGHTHIDE 405 (577)
T ss_pred EEEEEEeeCCCCcc---------hhhhhhHHHHHHHHHHHHhhhhhccccCccee
Confidence 99999999886411 11225544445555677778888877776533
No 228
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=52.86 E-value=1.6e+02 Score=25.83 Aligned_cols=96 Identities=15% Similarity=0.042 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCCccCCchhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCC
Q 019395 101 SSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPL 180 (341)
Q Consensus 101 ~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~ 180 (341)
..+.++++|+.|++.|..+|.-..+.. . + .... ....+.+++.++.+++.-++..-.+++|..|=+.
T Consensus 82 ~~~~~~~~i~~a~~lg~~~i~~~~g~~-~-------~----~~~~-~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~ 148 (254)
T TIGR03234 82 FREGVALAIAYARALGCPQVNCLAGKR-P-------A----GVSP-EEARATLVENLRYAADALDRIGLTLLIEPINSFD 148 (254)
T ss_pred HHHHHHHHHHHHHHhCCCEEEECcCCC-C-------C----CCCH-HHHHHHHHHHHHHHHHHHHhcCCEEEEEECCccc
Confidence 468899999999999999776322110 0 0 0000 2445667777888876665555567787665443
Q ss_pred CCCCChHHHHHHHHHHHHHHHhcC-CCceEEEeC
Q 019395 181 APGVALDTLKSYYKAGYDAVRKYT-STAYVIMSN 213 (341)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~aIR~~~-p~~~v~~~~ 213 (341)
.+. .+..-.+++.+.|++++ |+.-+.+..
T Consensus 149 ~~~----~~l~t~~~~~~li~~v~~~~~~i~~D~ 178 (254)
T TIGR03234 149 MPG----FFLTTTEQALAVIDDVGRENLKLQYDL 178 (254)
T ss_pred CCC----ChhcCHHHHHHHHHHhCCCCEeEeeeh
Confidence 211 12334556677788877 555555553
No 229
>PLN02623 pyruvate kinase
Probab=52.56 E-value=17 Score=36.55 Aligned_cols=56 Identities=14% Similarity=0.151 Sum_probs=33.9
Q ss_pred CHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCC
Q 019395 64 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA 126 (341)
Q Consensus 64 ~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~ 126 (341)
+++-++.|.+.|+|.+||.+++- + .......++.+.++-+....+.+.+++|+-+.
T Consensus 124 s~e~l~~li~aGmnv~RlNfSHg---~----~e~h~~~i~~vr~~~~~~~~~~iaIl~Dl~GP 179 (581)
T PLN02623 124 TREMIWKLAEAGMNVARLNMSHG---D----HASHQKVIDLVKEYNAQSKDNVIAIMLDTKGP 179 (581)
T ss_pred CHHHHHHHHHcCCCEEEEECCCC---C----HHHHHHHHHHHHHHHHHcCCCceEEEecCCCC
Confidence 47899999999999999988651 1 01111122333322222222568899998754
No 230
>PRK09389 (R)-citramalate synthase; Provisional
Probab=52.50 E-value=17 Score=35.99 Aligned_cols=61 Identities=13% Similarity=-0.001 Sum_probs=43.7
Q ss_pred CHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecC
Q 019395 64 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 124 (341)
Q Consensus 64 ~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh 124 (341)
.++|++.+.+.|.+.|++.++-+...-...-..-.++.++.+.+.|+.|+++|+.|.+++-
T Consensus 75 ~~~di~~a~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~e 135 (488)
T PRK09389 75 VKVDIDAALECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGE 135 (488)
T ss_pred CHHHHHHHHhCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEe
Confidence 3899999999999999997754322100000111245788999999999999999998764
No 231
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=52.08 E-value=53 Score=34.74 Aligned_cols=70 Identities=24% Similarity=0.324 Sum_probs=43.6
Q ss_pred cchHHHHHHHHHHHHHcCCeEEEecC-CCCCCCC--CCCCCCCCCCccCCchhHHHHHHHHHHHHHHHhCCCCceeEEEe
Q 019395 99 GGSSKVLDNAFDWAEKYGVKVIVDLH-AAPGSQN--GNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIEL 175 (341)
Q Consensus 99 ~~~l~~ld~~i~~a~~~gi~vildlh-~~~g~~~--~~~~~g~~~~~~~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el 175 (341)
++.++.|..+|+.++++||+||-.+. ..|+..+ .+..+|.+ +......++.++.|.+.| |+++ |
T Consensus 804 ~~~~~~l~~~i~~~~~~~~~~ig~~~p~~p~y~~t~~fg~~g~~-------rs~a~~~~~~~~~~~~~y---~~f~---~ 870 (912)
T TIGR02171 804 NENMNSLKAFIDETAKKGVKVIGTIFPQSPGYKNTGSFGRYGPR-------RSIAKKIIDSFKKMEKTY---PHFI---L 870 (912)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEECCCCCCccccCcccccCcc-------hhhHHHHHHHHHHHHhhC---CceE---E
Confidence 45689999999999999999997665 4455432 12222321 133344455555566555 6555 7
Q ss_pred ecCCCC
Q 019395 176 INEPLA 181 (341)
Q Consensus 176 ~NEP~~ 181 (341)
++|--.
T Consensus 871 ~denk~ 876 (912)
T TIGR02171 871 FDENKD 876 (912)
T ss_pred EecCcC
Confidence 888654
No 232
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=51.95 E-value=12 Score=28.85 Aligned_cols=45 Identities=22% Similarity=0.274 Sum_probs=23.8
Q ss_pred cCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCe
Q 019395 63 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVK 118 (341)
Q Consensus 63 ~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~ 118 (341)
++++||+.|++.||.+|== . ..+.+.+ ..-..+.+-+.|++.||.
T Consensus 15 ~~~~d~~~la~~GfktVIn-l----Rpd~E~~------~qp~~~~~~~~a~~~Gl~ 59 (110)
T PF04273_consen 15 PSPEDLAQLAAQGFKTVIN-L----RPDGEEP------GQPSSAEEAAAAEALGLQ 59 (110)
T ss_dssp --HHHHHHHHHCT--EEEE------S-TTSTT------T-T-HHCHHHHHHHCT-E
T ss_pred CCHHHHHHHHHCCCcEEEE-C----CCCCCCC------CCCCHHHHHHHHHHcCCe
Confidence 5799999999999999842 1 1111111 111234455889999976
No 233
>PF07364 DUF1485: Protein of unknown function (DUF1485); InterPro: IPR015995 Proteins in this entry are involved in degradation of the cyanobacterial heptapeptide hepatotoxin microcystin LR, and are encoded in the mlr gene cluster []. MlrC from Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) is believed to mediate the last step of peptidolytic degradation of the tetrapeptide. It is suspected to be a metallopeptidase based on homology to known peptidases and its inhibition by metal chelators. The proteins encoded by the mlr cluster may be involved in cell wall peptidoglycan cycling and subsequently act fortuitously in hydrolysis of microcystin LR. This entry represents the N-terminal region of these proteins.; PDB: 3IUU_A.
Probab=50.75 E-value=18 Score=33.16 Aligned_cols=116 Identities=13% Similarity=0.091 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCCccCCchhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCC
Q 019395 104 VLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPG 183 (341)
Q Consensus 104 ~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~ 183 (341)
.+--+++.++++|..++..++....+ +| +-..+.|.++...+.++.+....+-|+=| -.++ .
T Consensus 46 ~~~g~~~~a~~~g~e~vp~~~a~A~P------~G---------~v~~~aye~l~~eil~~l~~agp~Dgv~L--~LHG-A 107 (292)
T PF07364_consen 46 EIGGFLDAAEAQGWEVVPLLWAAAEP------GG---------PVTREAYERLRDEILDRLRAAGPLDGVLL--DLHG-A 107 (292)
T ss_dssp HHHHHHHHHHHTT-EEEEEEEEEE-S------EE----------B-HHHHHHHHHHHHHHHHHS---SEEEE--EE-S--
T ss_pred chHHHHHHHHHCCCEEEeeEeeeecC------CC---------cccHHHHHHHHHHHHHHHHhcCCcCEEEE--eccC-c
Confidence 45668899999999999988865211 11 13456666777777666655322222111 1232 1
Q ss_pred CChHHHHHHHHHHHHHHHh-cCCCceEEEe-CCCCCCChhhhhhccCCCCcEEEEeeecCC
Q 019395 184 VALDTLKSYYKAGYDAVRK-YTSTAYVIMS-NRLGPADHKELLSFASGLSRVVIDVHYYNL 242 (341)
Q Consensus 184 ~~~~~~~~~~~~~~~aIR~-~~p~~~v~~~-~~~~~~~~~~~~~~~~~~~~~v~~~H~Y~~ 242 (341)
...+....-=-+++..||+ ++|+.+|.+. +..++ -...+.. .-++++.++.|+.
T Consensus 108 mv~e~~~D~EG~Ll~rvR~~vGp~vpI~~tlDlHaN-vs~~mv~----~ad~~~~yrtyPH 163 (292)
T PF07364_consen 108 MVAEGYDDGEGDLLRRVRAIVGPDVPIAATLDLHAN-VSPRMVE----AADIIVGYRTYPH 163 (292)
T ss_dssp --BSS-SSHHHHHHHHHHHHHTTTSEEEEEE-TT-----HHHHH----H-SEEEE---SS-
T ss_pred EeecCCCCchHHHHHHHHHHhCCCCeEEEEeCCCCC-ccHHHHH----hCCEEEEcCCCCc
Confidence 1112222223357788898 7899999998 43332 1123333 3458899999964
No 234
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=50.38 E-value=2.3e+02 Score=27.26 Aligned_cols=144 Identities=16% Similarity=0.105 Sum_probs=69.7
Q ss_pred HHHHHHHHCCCCEEEcCcccccccCCCC---CC-CcccchH-HHHHHHHHHHHHcCCeEEEec--CC-CCCCCCCCCCC-
Q 019395 66 EDFKFLSSNGINAVRIPVGWWIANDPTP---PK-PFVGGSS-KVLDNAFDWAEKYGVKVIVDL--HA-APGSQNGNEHS- 136 (341)
Q Consensus 66 ~d~~~i~~~G~N~VRlpi~~~~~~~~~~---~~-~~~~~~l-~~ld~~i~~a~~~gi~vildl--h~-~~g~~~~~~~~- 136 (341)
+.++.++++|++.+=|-=+|+...+... ++ ..+++-+ .-|..+++.+++.||+.=|=+ -. .+.+.--..|.
T Consensus 62 ~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v~~~S~l~~~hPd 141 (394)
T PF02065_consen 62 ELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMVSPDSDLYREHPD 141 (394)
T ss_dssp HHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEEESSSCHCCSSBG
T ss_pred HHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEeccccccchhHHHHhCcc
Confidence 4456668899999999888864322110 00 1112222 338888999999999855422 10 01110000000
Q ss_pred ------CC--CCCc----cCCc-hhHHHHHHHHHHHHHHHhCCCCceeEEEee---cCCCCCCCChHHHHH---HHHHHH
Q 019395 137 ------AT--RDGF----QEWG-DSNVADTVAVIDFLAARYANRPSLAAIELI---NEPLAPGVALDTLKS---YYKAGY 197 (341)
Q Consensus 137 ------g~--~~~~----~~w~-~~~~~~~~~~~~~la~~y~~~~~v~~~el~---NEP~~~~~~~~~~~~---~~~~~~ 197 (341)
+. ..+. .... ++.++...+.+..+.+.+ +-..+- ||-. .|+..+..+ +.+.+ -+.+++
T Consensus 142 w~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~-gidYiK-~D~n~~~~~~~~~~~~-~~~~~~~~~~y~l~ 218 (394)
T PF02065_consen 142 WVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREW-GIDYIK-WDFNRDITEAGSPSLP-EGYHRYVLGLYRLL 218 (394)
T ss_dssp GBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHT-T-SEEE-EE-TS-TTS-SSTTS--GHHHHHHHHHHHHH
T ss_pred ceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhc-CCCEEE-eccccCCCCCCCCCch-HHHHHHHHHHHHHH
Confidence 00 0000 1111 667777777777776665 223333 5542 233322222 23333 344688
Q ss_pred HHHHhcCCCceEEEe
Q 019395 198 DAVRKYTSTAYVIMS 212 (341)
Q Consensus 198 ~aIR~~~p~~~v~~~ 212 (341)
+++|+..|+.+|-..
T Consensus 219 ~~L~~~~P~v~iE~C 233 (394)
T PF02065_consen 219 DRLRARFPDVLIENC 233 (394)
T ss_dssp HHHHHHTTTSEEEE-
T ss_pred HHHHHhCCCcEEEec
Confidence 899999998876554
No 235
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=50.18 E-value=43 Score=31.37 Aligned_cols=49 Identities=20% Similarity=0.300 Sum_probs=39.1
Q ss_pred CHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCC
Q 019395 64 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA 126 (341)
Q Consensus 64 ~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~ 126 (341)
+.+|++...+.|+..||+.++.. -.+.+.+.++.+++.|+.|.+.+-..
T Consensus 90 ~~~dl~~a~~~gvd~iri~~~~~--------------e~~~~~~~i~~ak~~G~~v~~~l~~a 138 (337)
T PRK08195 90 TVDDLKMAYDAGVRVVRVATHCT--------------EADVSEQHIGLARELGMDTVGFLMMS 138 (337)
T ss_pred cHHHHHHHHHcCCCEEEEEEecc--------------hHHHHHHHHHHHHHCCCeEEEEEEec
Confidence 57899999999999999865321 12457899999999999998876643
No 236
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=49.91 E-value=46 Score=31.14 Aligned_cols=48 Identities=21% Similarity=0.230 Sum_probs=38.3
Q ss_pred CHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCC
Q 019395 64 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 125 (341)
Q Consensus 64 ~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~ 125 (341)
+.+|++...+.|+..||+.++.. -.+.+.+.++.+++.|+.|.+.+-.
T Consensus 89 ~~~dl~~a~~~gvd~iri~~~~~--------------e~d~~~~~i~~ak~~G~~v~~~l~~ 136 (333)
T TIGR03217 89 TVHDLKAAYDAGARTVRVATHCT--------------EADVSEQHIGMARELGMDTVGFLMM 136 (333)
T ss_pred CHHHHHHHHHCCCCEEEEEeccc--------------hHHHHHHHHHHHHHcCCeEEEEEEc
Confidence 58899999999999999866321 1245789999999999999887654
No 237
>cd00927 Cyt_c_Oxidase_VIc Cytochrome c oxidase subunit VIc. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. The VIc subunit is found only in eukaryotes and its specific function remains unclear. It has been reported that the relative concentrations of some nuclear encoded CcO subunits, including subunit VIc, compared to those of the mitochondrial encoded subunits, are altered significantly during the progression of prostate cancer.
Probab=49.57 E-value=23 Score=24.83 Aligned_cols=24 Identities=21% Similarity=0.506 Sum_probs=21.0
Q ss_pred HHHHHHHhhccCHHHHHHHHHCCC
Q 019395 53 QVLQDHWDSYITDEDFKFLSSNGI 76 (341)
Q Consensus 53 ~~~~~~~~~~~~e~d~~~i~~~G~ 76 (341)
...+++|.+|=..+||++|++.|+
T Consensus 43 ~aYadFYknYD~~kdFerM~~~G~ 66 (70)
T cd00927 43 KAYADFYKTYDAMKDFERMRKAGL 66 (70)
T ss_pred HHHHHHHHccChHHHHHHHHHcCC
Confidence 347789999989999999999995
No 238
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=49.29 E-value=56 Score=30.29 Aligned_cols=101 Identities=23% Similarity=0.298 Sum_probs=65.7
Q ss_pred ccCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCC
Q 019395 62 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDG 141 (341)
Q Consensus 62 ~~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~ 141 (341)
..+++-++.|.++|++-||++.+ .+ .+...+.+-..|..|+++|+.|=+.+-..||-
T Consensus 121 ~~~~e~l~~L~eAGLDEIRfHp~-------~~----~~~~~e~~i~~l~~A~~~g~dvG~EiPaipg~------------ 177 (353)
T COG2108 121 LATEEALKALAEAGLDEIRFHPP-------RP----GSKSSEKYIENLKIAKKYGMDVGVEIPAIPGE------------ 177 (353)
T ss_pred cCCHHHHHHHHhCCCCeEEecCC-------Cc----cccccHHHHHHHHHHHHhCccceeecCCCcch------------
Confidence 45899999999999999998653 11 13345777788899999999998888877642
Q ss_pred ccCCchhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHh
Q 019395 142 FQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRK 202 (341)
Q Consensus 142 ~~~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~ 202 (341)
.++.+.+.+. +..++. -|--+||-.. +...+..++.+.+.+.+.
T Consensus 178 --------e~~i~e~~~~-~~~~~~-----~FlNiNELE~---sE~N~~~l~~~gy~~~~~ 221 (353)
T COG2108 178 --------EEAILEFAKA-LDENGL-----DFLNINELEF---SENNYENLLERGYKISDD 221 (353)
T ss_pred --------HHHHHHHHHH-HHhccc-----ceeeeeeeee---ccchHHHHHhcCceeccC
Confidence 2233333333 333321 1335688764 445677777666655443
No 239
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=48.30 E-value=62 Score=30.04 Aligned_cols=60 Identities=20% Similarity=0.216 Sum_probs=41.0
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcc--cchHHHHHHHHHHHHHcCCe-EEEecCCCC
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV--GGSSKVLDNAFDWAEKYGVK-VIVDLHAAP 127 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~--~~~l~~ld~~i~~a~~~gi~-vildlh~~~ 127 (341)
++.++.+++.|++.|.|++.- .++.....+. ...++.+-+.|+.+.+.|+. |-+.....+
T Consensus 102 ~~~~~~L~~~gl~~v~ISld~---~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv~~ 164 (334)
T TIGR02666 102 ARHAKDLKEAGLKRVNVSLDS---LDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVVMR 164 (334)
T ss_pred HHHHHHHHHcCCCeEEEeccc---CCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeC
Confidence 567889999999999988742 1221111121 23688888999999999997 777654443
No 240
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=48.21 E-value=2e+02 Score=25.54 Aligned_cols=114 Identities=18% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCCccC
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQE 144 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~~ 144 (341)
++--+.+++.|+. |-+.-++ ..--..+.....+..++.+.+.++.|++.|..+|+ +|..........
T Consensus 48 ~~l~~~~~~~gl~-ls~h~p~-~~nl~s~d~~~r~~~~~~l~~~i~~A~~lGa~~vv-~h~g~~~~~~~e---------- 114 (273)
T smart00518 48 EKFKEALKENNID-VSVHAPY-LINLASPDKEKVEKSIERLIDEIKRCEELGIKALV-FHPGSYLKQSKE---------- 114 (273)
T ss_pred HHHHHHHHHcCCC-EEEECCc-eecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEE-EccccccCCCHH----------
Q ss_pred CchhHHHHHHHHHHHHHHHhCCCCceeEEEee-cCCCCCCCChHHHHHHHHHH
Q 019395 145 WGDSNVADTVAVIDFLAARYANRPSLAAIELI-NEPLAPGVALDTLKSYYKAG 196 (341)
Q Consensus 145 w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~-NEP~~~~~~~~~~~~~~~~~ 196 (341)
...+++++.++.+++. ...-.+++|.+ ..+..-..+.+.+..+++.+
T Consensus 115 ---~~~~~~~~~l~~l~~~--~~gv~l~lEn~~~~~~~~~~~~~~~~~ll~~v 162 (273)
T smart00518 115 ---EALNRIIESLNEVIDE--TKGVVILLETTAGKGSQIGSTFEDLKEIIDLI 162 (273)
T ss_pred ---HHHHHHHHHHHHHHhc--cCCcEEEEeccCCCCCccCCCHHHHHHHHHhc
No 241
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=47.54 E-value=2e+02 Score=25.38 Aligned_cols=95 Identities=18% Similarity=0.133 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCCccCCc-hhHHHHHHHHHHHHHHHhCCCCceeEEEeecCC
Q 019395 101 SSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINEP 179 (341)
Q Consensus 101 ~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~~w~-~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP 179 (341)
..+.++++|+.|++.|..+|...- |... ..+. ....+.+.+.++.+++..++..-.+++|..|.+
T Consensus 83 ~~~~~~~~i~~a~~lga~~i~~~~---g~~~-----------~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n~~ 148 (258)
T PRK09997 83 FRDGVAAAIRYARALGNKKINCLV---GKTP-----------AGFSSEQIHATLVENLRYAANMLMKEDILLLIEPINHF 148 (258)
T ss_pred HHHHHHHHHHHHHHhCCCEEEECC---CCCC-----------CCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCc
Confidence 467899999999999999775421 1100 0011 344567778888888777776667889988864
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhcCC-CceEEEeC
Q 019395 180 LAPGVALDTLKSYYKAGYDAVRKYTS-TAYVIMSN 213 (341)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~aIR~~~p-~~~v~~~~ 213 (341)
..+.. ...-...+...|+++++ +..+.+..
T Consensus 149 ~~~~~----~~~~~~~~~~ll~~v~~~~v~l~~D~ 179 (258)
T PRK09997 149 DIPGF----HLTGTRQALKLIDDVGCCNLKIQYDI 179 (258)
T ss_pred CCCCC----ccCCHHHHHHHHHHhCCCCEEEEeEH
Confidence 32111 11223345567777774 45555553
No 242
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=46.79 E-value=2e+02 Score=26.01 Aligned_cols=57 Identities=21% Similarity=0.225 Sum_probs=38.9
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCC
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 125 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~ 125 (341)
..-.+.+|+.|.+.+|-.. +.+.+++..|..-..+.|+.+-+.+.++|+.|+-.+..
T Consensus 62 ~~~A~~vk~~Ga~~lRGga----fKPRTSPYsFQGlge~gL~~l~~a~~~~Gl~vvtEvm~ 118 (286)
T COG2876 62 RETAESVKAAGAKALRGGA----FKPRTSPYSFQGLGEEGLKLLKRAADETGLPVVTEVMD 118 (286)
T ss_pred HHHHHHHHHcchhhccCCc----CCCCCCcccccccCHHHHHHHHHHHHHcCCeeEEEecC
Confidence 4556678899999999864 22222222232335677777778899999999987654
No 243
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=46.73 E-value=12 Score=35.24 Aligned_cols=53 Identities=17% Similarity=0.288 Sum_probs=31.8
Q ss_pred CHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHH--cCCeEEEecCCC
Q 019395 64 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEK--YGVKVIVDLHAA 126 (341)
Q Consensus 64 ~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~--~gi~vildlh~~ 126 (341)
+.+-++.|-+.|+|.+||.+++- .. +...+.++.+=+...+ ..+.+++|+-+.
T Consensus 16 ~~e~l~~li~aGm~v~RiN~SHg---------~~-e~~~~~i~~iR~a~~~~~~~i~IllDl~GP 70 (348)
T PF00224_consen 16 SVEVLRKLIEAGMNVARINFSHG---------TH-EEHKEIIENIREAEKELGKPIAILLDLKGP 70 (348)
T ss_dssp SHHHHHHHHHHTEEEEEEETTSS----------H-HHHHHHHHHHHHHHHHTTTS-EEEEEE-TS
T ss_pred CHHHHHHHHHhccEEEEEeeecC---------CH-HHHHHHHHHHHHHHhccCCceEEEeccCCC
Confidence 37789999999999999988751 11 1122333333233333 348899999754
No 244
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=46.46 E-value=2.3e+02 Score=25.89 Aligned_cols=126 Identities=12% Similarity=0.107 Sum_probs=69.7
Q ss_pred HHHHHCCCCEEEcCccccc-ccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCCccCCch
Q 019395 69 KFLSSNGINAVRIPVGWWI-ANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGD 147 (341)
Q Consensus 69 ~~i~~~G~N~VRlpi~~~~-~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~~w~~ 147 (341)
+.+++.|+++|-|.+---. --.+.-.+.........+..-|..+++.|++|+|.+=+..+.. .+- ..
T Consensus 19 ~~~~~~g~~~v~lAFi~~~~~~~~~w~g~~~~~~~~~~~~~i~~lk~~G~kViiS~GG~~g~~----~~~--------~~ 86 (294)
T cd06543 19 TYAAATGVKAFTLAFIVASGGCKPAWGGSYPLDQGGWIKSDIAALRAAGGDVIVSFGGASGTP----LAT--------SC 86 (294)
T ss_pred HHHHHcCCCEEEEEEEEcCCCCcccCCCCCCcccchhHHHHHHHHHHcCCeEEEEecCCCCCc----ccc--------Cc
Confidence 4667889999998753100 0001001111001234566778899999999999876654321 000 12
Q ss_pred hHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCceEEEe
Q 019395 148 SNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMS 212 (341)
Q Consensus 148 ~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~v~~~ 212 (341)
...+.+++....+.++|. +-++|+-=|=.. ....+.+.. ..++++.+|+..|+..|.+.
T Consensus 87 ~~~~~~~~a~~~~i~~y~----~dgiDfDiE~~~-~~d~~~~~~-~~~al~~Lq~~~p~l~vs~T 145 (294)
T cd06543 87 TSADQLAAAYQKVIDAYG----LTHLDFDIEGGA-LTDTAAIDR-RAQALALLQKEYPDLKISFT 145 (294)
T ss_pred ccHHHHHHHHHHHHHHhC----CCeEEEeccCCc-cccchhHHH-HHHHHHHHHHHCCCcEEEEe
Confidence 456677777777778883 333444333111 111122333 34556788888888777776
No 245
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=46.25 E-value=58 Score=29.16 Aligned_cols=47 Identities=26% Similarity=0.343 Sum_probs=37.8
Q ss_pred CHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecC
Q 019395 64 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 124 (341)
Q Consensus 64 ~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh 124 (341)
..+|++..++.|++.||+.++-. ....+.++++.++++|+.|.+.+-
T Consensus 87 ~~~~i~~a~~~g~~~iri~~~~s--------------~~~~~~~~i~~ak~~G~~v~~~~~ 133 (263)
T cd07943 87 TVDDLKMAADLGVDVVRVATHCT--------------EADVSEQHIGAARKLGMDVVGFLM 133 (263)
T ss_pred CHHHHHHHHHcCCCEEEEEechh--------------hHHHHHHHHHHHHHCCCeEEEEEE
Confidence 47899999999999999865321 124678899999999999988874
No 246
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=46.09 E-value=2.5e+02 Score=26.19 Aligned_cols=98 Identities=10% Similarity=0.048 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHH-cCCeEEEecCCCCCCCCCCCCCCCCCCccCCc-----hhHHHHHHHHHHHHHHHhCCCCce-eEEE
Q 019395 102 SKVLDNAFDWAEK-YGVKVIVDLHAAPGSQNGNEHSATRDGFQEWG-----DSNVADTVAVIDFLAARYANRPSL-AAIE 174 (341)
Q Consensus 102 l~~ld~~i~~a~~-~gi~vildlh~~~g~~~~~~~~g~~~~~~~w~-----~~~~~~~~~~~~~la~~y~~~~~v-~~~e 174 (341)
...+.++...-++ .+++|+|.+-+...+.. .|. +...+.+++-+-.++++|+ ...| +-||
T Consensus 55 ~~~~~~~~~lk~~~p~lkvlisiGG~~~~~~------------~f~~~~~~~~~r~~fi~~iv~~l~~~~-~DGidiDwE 121 (362)
T cd02872 55 LGLYERFNALKEKNPNLKTLLAIGGWNFGSA------------KFSAMAASPENRKTFIKSAIAFLRKYG-FDGLDLDWE 121 (362)
T ss_pred hhHHHHHHHHHhhCCCceEEEEEcCCCCCcc------------hhHHHhCCHHHHHHHHHHHHHHHHHcC-CCCeeeeee
Confidence 3445555544333 48999999865431110 122 4566777777777777774 2333 2233
Q ss_pred eecCCCCCCCChHHHHHHHHHHHHHHHhcCCCceEEEe
Q 019395 175 LINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMS 212 (341)
Q Consensus 175 l~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~v~~~ 212 (341)
-.+-......+.+.+..+++++.+++++..++..|.+.
T Consensus 122 ~p~~~~~~~~d~~~~~~ll~~lr~~l~~~~~~~~ls~a 159 (362)
T cd02872 122 YPGQRGGPPEDKENFVTLLKELREAFEPEAPRLLLTAA 159 (362)
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHHHHhhCcCeEEEEE
Confidence 22211111123456778888888888877555555543
No 247
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=45.56 E-value=81 Score=28.45 Aligned_cols=58 Identities=19% Similarity=0.204 Sum_probs=39.8
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCC
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA 126 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~ 126 (341)
.+-.+.||++|+..+|.... -+.+.+..|..-..+.+..+-+.|++.||.++-++|..
T Consensus 44 ~~~A~~lk~~g~~~~r~~~~----kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~te~~d~ 101 (266)
T PRK13398 44 VKVAEKLKELGVHMLRGGAF----KPRTSPYSFQGLGEEGLKILKEVGDKYNLPVVTEVMDT 101 (266)
T ss_pred HHHHHHHHHcCCCEEEEeee----cCCCCCCccCCcHHHHHHHHHHHHHHcCCCEEEeeCCh
Confidence 55667889999999998541 11122122322245667777788999999999999875
No 248
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=45.50 E-value=33 Score=28.67 Aligned_cols=59 Identities=25% Similarity=0.267 Sum_probs=38.9
Q ss_pred ccCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCc-ccchHHHHHHHHHHHHHcC-CeEEEec
Q 019395 62 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF-VGGSSKVLDNAFDWAEKYG-VKVIVDL 123 (341)
Q Consensus 62 ~~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~-~~~~l~~ld~~i~~a~~~g-i~vildl 123 (341)
.++++.++.|++.|++.|.+.+.-. ++.....+ ....++.+.+.++.+.++| +.|.+.+
T Consensus 97 ~~~~~~~~~l~~~~~~~i~isl~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~ 157 (216)
T smart00729 97 TLTEELLEALKEAGVNRVSLGVQSG---SDEVLKAINRGHTVEDVLEAVEKLREAGPIKVSTDL 157 (216)
T ss_pred cCCHHHHHHHHHcCCCeEEEecccC---CHHHHHHhcCCCCHHHHHHHHHHHHHhCCcceEEeE
Confidence 4578999999999999888877421 11000000 0224688999999999999 6554433
No 249
>TIGR02867 spore_II_P stage II sporulation protein P. Stage II sporulation protein P is a protein of the endospore formation program in a number of lineages in the Firmicutes (low-GC Gram-positive bacteria). It is expressed in the mother cell compartment, under control of Sigma-E. SpoIIP, along with SpoIIM and SpoIID, is one of three major proteins involved in engulfment of the forespore by the mother cell. This protein family is named for the single member in Bacillus subtilis, although most sporulating bacteria have two members.
Probab=45.32 E-value=60 Score=27.85 Aligned_cols=55 Identities=20% Similarity=0.166 Sum_probs=32.5
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHH-HHHHHc-CCeEEEecCCCC
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAF-DWAEKY-GVKVIVDLHAAP 127 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i-~~a~~~-gi~vildlh~~~ 127 (341)
+.--+.|.+.|++++.-.-. ..+..|.. ...+-.+.| +..+++ +|.++||||...
T Consensus 37 ~~L~~~Le~~Gi~vihd~t~-------~~~~~y~~-sY~~Sr~tv~~~l~~~p~i~~viDiHRDs 93 (196)
T TIGR02867 37 DRLAKELEEKGIGVIHDKTV-------HDGLNYEQ-SYDRSRETVKKALKENKDLKYIIDLHRDS 93 (196)
T ss_pred HHHHHHHHHCCCeEEEeCCc-------cCCccHHH-HHHHHHHHHHHHHHHCCCceEEEEeecCC
Confidence 45556778889998875321 11123333 334444444 444555 689999999873
No 250
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=45.21 E-value=74 Score=27.89 Aligned_cols=54 Identities=17% Similarity=0.205 Sum_probs=40.2
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecC
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 124 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh 124 (341)
..-++.+++.|+.-|.|+. +.+.....| ..++.+|+++.+.+.+.|...|-++-
T Consensus 49 ~al~~~a~~~gv~~V~vH~----f~DGRDt~P--~S~~~yl~~l~~~l~~~~~g~IAsv~ 102 (223)
T PF06415_consen 49 FALIKLAKKQGVKKVYVHA----FTDGRDTPP--KSALKYLEELEEKLAEIGIGRIASVS 102 (223)
T ss_dssp HHHHHHHHHTT-SEEEEEE----EE-SSSS-T--TTHHHHHHHHHHHHHHHTCTEEEEEE
T ss_pred HHHHHHHHHcCCCEEEEEE----ecCCCCCCc--chHHHHHHHHHHHHHhhCCceEEEEe
Confidence 7788889999999999865 455443333 45899999999999999887776654
No 251
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=44.82 E-value=1.3e+02 Score=24.42 Aligned_cols=45 Identities=9% Similarity=0.129 Sum_probs=32.2
Q ss_pred CCceeEEEe-ecCCCCCCCChHHHHHHHHHHHHHHHhcCCCceEEEe
Q 019395 167 RPSLAAIEL-INEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMS 212 (341)
Q Consensus 167 ~~~v~~~el-~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~v~~~ 212 (341)
.|.++.+.+ .|+-.. +.+.+.+..-++++++.||+..|+..|++.
T Consensus 50 ~p~~vvi~~G~ND~~~-~~~~~~~~~~~~~lv~~i~~~~~~~~iil~ 95 (171)
T cd04502 50 QPRRVVLYAGDNDLAS-GRTPEEVLRDFRELVNRIRAKLPDTPIAII 95 (171)
T ss_pred CCCEEEEEEecCcccC-CCCHHHHHHHHHHHHHHHHHHCCCCcEEEE
Confidence 455544433 577543 456788999999999999999988766654
No 252
>KOG2875 consensus 8-oxoguanine DNA glycosylase [Replication, recombination and repair]
Probab=44.49 E-value=32 Score=31.03 Aligned_cols=86 Identities=22% Similarity=0.354 Sum_probs=55.4
Q ss_pred hhhh-hhhhcCcchHHHHHHHHHhhccCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHH-HHHHc
Q 019395 38 GEYQ-ITNGFGPDKAPQVLQDHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFD-WAEKY 115 (341)
Q Consensus 38 ~~~~-~~~~~g~~~~~~~~~~~~~~~~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~-~a~~~ 115 (341)
||.. +.+.+-.+.....+.+||... ++-|..++..|+..+|--- +...+.-- .. +.+.++++..+|+ .|...
T Consensus 73 del~~i~~yf~ldv~L~~l~~~W~~~--D~~F~~la~qgvRlLrQdP-~E~lfSFi-CS--SNNNIaRIT~Mve~fc~~f 146 (323)
T KOG2875|consen 73 DELEAISKYFQLDVTLAQLYHHWGSV--DDHFQELAQQGVRLLRQDP-IECLFSFI-CS--SNNNIARITGMVERFCQAF 146 (323)
T ss_pred HHHHHHHHHHhheeeHHHHHHHhCcC--ChHHHHHHHhhhHHHhcCc-HHHHHHHH-hc--CCCcHHHHHHHHHHHHHhh
Confidence 4443 556666666666666777443 6779999998887777511 11111000 00 1235899999999 89999
Q ss_pred CCeEE----EecCCCCCC
Q 019395 116 GVKVI----VDLHAAPGS 129 (341)
Q Consensus 116 gi~vi----ldlh~~~g~ 129 (341)
|-+++ +|.|++|..
T Consensus 147 G~~i~~~dg~~~h~FPsl 164 (323)
T KOG2875|consen 147 GPRIIQLDGVDYHGFPSL 164 (323)
T ss_pred CcceEeecCcccccCccH
Confidence 99987 588998854
No 253
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=43.79 E-value=2.7e+02 Score=25.89 Aligned_cols=59 Identities=7% Similarity=-0.086 Sum_probs=36.5
Q ss_pred HHHHHHHHHCCCC--EEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCC
Q 019395 65 DEDFKFLSSNGIN--AVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA 126 (341)
Q Consensus 65 e~d~~~i~~~G~N--~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~ 126 (341)
.+-++.+++.|+. +|=|-+.|+. ....-.++++.+...+.+|+.+++.|++|++.+|-.
T Consensus 27 ~~~~~~~~~~~iP~d~i~lD~~~~~---~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~ 87 (339)
T cd06603 27 KEVDAGFDEHDIPYDVIWLDIEHTD---GKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPH 87 (339)
T ss_pred HHHHHHHHHcCCCceEEEEChHHhC---CCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCc
Confidence 3445556666643 4444444431 111123455566677899999999999999988744
No 254
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=43.42 E-value=35 Score=26.59 Aligned_cols=26 Identities=31% Similarity=0.629 Sum_probs=23.8
Q ss_pred HHHHHHHHHHcCCeEEEecCCCCCCC
Q 019395 105 LDNAFDWAEKYGVKVIVDLHAAPGSQ 130 (341)
Q Consensus 105 ld~~i~~a~~~gi~vildlh~~~g~~ 130 (341)
++++++...++|+.++||+-..|.|+
T Consensus 2 ~e~f~~~l~~~~i~~lVDVR~~P~S~ 27 (122)
T PF04343_consen 2 IERFYDLLKKNGIRVLVDVRLWPRSR 27 (122)
T ss_pred HHHHHHHHHHCCCeEEEEECCCCCCC
Confidence 67899999999999999999999875
No 255
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=43.20 E-value=1.3e+02 Score=26.52 Aligned_cols=119 Identities=19% Similarity=0.175 Sum_probs=65.5
Q ss_pred CHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHH----HHHHHcCCeEEEecCCCCCCCCCCCCCCCC
Q 019395 64 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAF----DWAEKYGVKVIVDLHAAPGSQNGNEHSATR 139 (341)
Q Consensus 64 ~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i----~~a~~~gi~vildlh~~~g~~~~~~~~g~~ 139 (341)
+.+|++.|+-.|+..|=-+-+| |.+. .+.+.+++.+++++ ..|.+.||++-+.+--.|...+
T Consensus 13 ~~eDlekMa~sGI~~Vit~Ahd-----P~~~-~~~~v~~~h~~rl~~~E~~Ra~~~Gl~~~vavGvHPr~iP-------- 78 (254)
T COG1099 13 GFEDLEKMALSGIREVITLAHD-----PYPM-KTAEVYLDHFRRLLGVEPERAEKAGLKLKVAVGVHPRAIP-------- 78 (254)
T ss_pred cHHHHHHHHHhChhhhhhcccC-----CCCc-ccHHHHHHHHHHHHccchhhHHhhCceeeEEeccCCCCCC--------
Confidence 5799999999999887553322 3221 22244667777776 4589999887665544443211
Q ss_pred CCccCCchhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCceEEEeCC
Q 019395 140 DGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNR 214 (341)
Q Consensus 140 ~~~~~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~v~~~~~ 214 (341)
. .....++.|-.-+. +..|.++. |-.....+. .-.+..+.-...-|+.+ .+|+++.+
T Consensus 79 --------~---e~~~~l~~L~~~l~-~e~VvAiG---EiGLe~~t~-~E~evf~~QL~LA~e~d--vPviVHTP 135 (254)
T COG1099 79 --------P---ELEEVLEELEELLS-NEDVVAIG---EIGLEEATD-EEKEVFREQLELARELD--VPVIVHTP 135 (254)
T ss_pred --------c---hHHHHHHHHHhhcc-cCCeeEee---ecccccCCH-HHHHHHHHHHHHHHHcC--CcEEEeCC
Confidence 1 13345555555555 44454332 332212232 34445555555556544 46777753
No 256
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=43.03 E-value=1e+02 Score=27.32 Aligned_cols=49 Identities=24% Similarity=0.234 Sum_probs=38.4
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCC
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 125 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~ 125 (341)
++.++.++++||++|=|+-+.- .+ ..+...++|+.++++|++|+..+..
T Consensus 74 ~~Yl~~~k~lGf~~IEiS~G~~---------~i---~~~~~~rlI~~~~~~g~~v~~EvG~ 122 (237)
T TIGR03849 74 DEYLNECDELGFEAVEISDGSM---------EI---SLEERCNLIERAKDNGFMVLSEVGK 122 (237)
T ss_pred HHHHHHHHHcCCCEEEEcCCcc---------CC---CHHHHHHHHHHHHhCCCeEeccccc
Confidence 7788899999999999875431 11 1366778999999999999977553
No 257
>PRK05826 pyruvate kinase; Provisional
Probab=42.86 E-value=60 Score=31.91 Aligned_cols=53 Identities=23% Similarity=0.280 Sum_probs=33.6
Q ss_pred CHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHH--cCCeEEEecCCC
Q 019395 64 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEK--YGVKVIVDLHAA 126 (341)
Q Consensus 64 ~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~--~gi~vildlh~~ 126 (341)
+.+.++.|-..|+|.+||.+++- .+ +...+.++.+=+..++ +.+.+++|+-+.
T Consensus 18 ~~e~l~~li~~G~~v~RiN~sHg---------~~-~~~~~~i~~ir~~~~~~~~~i~I~~Dl~Gp 72 (465)
T PRK05826 18 SPENLEKLIEAGVNVVRLNFSHG---------SH-EEHGKRAALVREIAAKLGRPVAILLDLKGP 72 (465)
T ss_pred CHHHHHHHHHcCCCEEEEEcCCC---------CH-HHHHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 47899999999999999988651 11 1122333333233333 347889998764
No 258
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=42.46 E-value=47 Score=32.48 Aligned_cols=48 Identities=21% Similarity=0.210 Sum_probs=37.0
Q ss_pred cCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecC
Q 019395 63 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 124 (341)
Q Consensus 63 ~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh 124 (341)
+.+++++...+.|++.||+.++-. . ...+.++|+.|+++|+.|.+.+-
T Consensus 97 vv~~~v~~A~~~Gvd~irif~~ln---------d-----~~n~~~~v~~ak~~G~~v~~~i~ 144 (448)
T PRK12331 97 VVESFVQKSVENGIDIIRIFDALN---------D-----VRNLETAVKATKKAGGHAQVAIS 144 (448)
T ss_pred hHHHHHHHHHHCCCCEEEEEEecC---------c-----HHHHHHHHHHHHHcCCeEEEEEE
Confidence 557899999999999999965321 0 13477899999999999876653
No 259
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=42.29 E-value=3e+02 Score=26.07 Aligned_cols=125 Identities=14% Similarity=0.153 Sum_probs=69.5
Q ss_pred cCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcc----cchHHHHHHHHHHHHHcCCe-EEEecC-CCCCCCCCCCCC
Q 019395 63 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV----GGSSKVLDNAFDWAEKYGVK-VIVDLH-AAPGSQNGNEHS 136 (341)
Q Consensus 63 ~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~----~~~l~~ld~~i~~a~~~gi~-vildlh-~~~g~~~~~~~~ 136 (341)
++++.++.|+++|++.|-+.+ ... ++.-...+- ...++..-+.++.|.+.||. |-.++- +.+
T Consensus 161 lt~e~l~~Lk~aGv~r~~i~l--ET~-~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~Glg--------- 228 (371)
T PRK09240 161 LSEEEYAELVELGLDGVTVYQ--ETY-NPATYAKHHLRGPKRDFEYRLETPERAGRAGIRKIGLGALLGLS--------- 228 (371)
T ss_pred CCHHHHHHHHHcCCCEEEEEE--ecC-CHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCCCeeceEEEecCC---------
Confidence 689999999999999555433 211 110000010 12466777789999999996 533322 211
Q ss_pred CCCCCccCCchhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCC------C--CCChHHHHHHHHHHHHHHHhcCCCce
Q 019395 137 ATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLA------P--GVALDTLKSYYKAGYDAVRKYTSTAY 208 (341)
Q Consensus 137 g~~~~~~~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~------~--~~~~~~~~~~~~~~~~aIR~~~p~~~ 208 (341)
.|. ...-..+..++.|-.+|...+.-+ .+|+-.. + ..+. .-+.+++.+.|=..|+.-
T Consensus 229 -------e~~-~d~~~~a~~l~~L~~~~~~~~~sv---~~~~l~P~~g~~~~~~~~~~----~e~l~~ia~~Rl~lP~~~ 293 (371)
T PRK09240 229 -------DWR-TDALMTALHLRYLQRKYWQAEYSI---SFPRLRPCTGGIEPASIVSD----KQLVQLICAFRLFLPDVE 293 (371)
T ss_pred -------ccH-HHHHHHHHHHHHHHHhCCCCceee---ecCccccCCCCCCCCCCCCH----HHHHHHHHHHHHHCcccc
Confidence 111 222234455667777777755323 2233111 0 1222 224566778898999998
Q ss_pred EEEeCC
Q 019395 209 VIMSNR 214 (341)
Q Consensus 209 v~~~~~ 214 (341)
|.+.++
T Consensus 294 i~~s~g 299 (371)
T PRK09240 294 ISLSTR 299 (371)
T ss_pred cEEecC
Confidence 888754
No 260
>KOG0564 consensus 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=42.20 E-value=40 Score=32.95 Aligned_cols=57 Identities=18% Similarity=0.456 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCCccCCc--hhHHHHHHHHHHHHHHHhCCCC
Q 019395 101 SSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWG--DSNVADTVAVIDFLAARYANRP 168 (341)
Q Consensus 101 ~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~~w~--~~~~~~~~~~~~~la~~y~~~~ 168 (341)
..+.+|..++.|++.|++=||-|-+.|... ...|. ..--+.++++++.+-++|+|+-
T Consensus 90 ~~~~Id~aLe~a~~~GirNILALRGDpP~g-----------~d~~~~~e~gF~yA~DLVr~Irs~YGDyF 148 (590)
T KOG0564|consen 90 PKEMIDKALEQAKALGIRNILALRGDPPIG-----------QDKWVEEEGGFRYAVDLVRYIRSKYGDYF 148 (590)
T ss_pred cHHHHHHHHHHHHHhCchhhhhhcCCCCCC-----------ccccccccCCchhHHHHHHHHHHHhCCeE
Confidence 368999999999999999999999886321 11132 1124578899999999999854
No 261
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=41.12 E-value=86 Score=27.00 Aligned_cols=44 Identities=11% Similarity=0.172 Sum_probs=31.5
Q ss_pred CHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeE
Q 019395 64 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKV 119 (341)
Q Consensus 64 ~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~v 119 (341)
.|.-++.|+++|.++|.+ + |-.+ ...++.|..+.+.|.++|+++
T Consensus 137 vetAiaml~dmG~~SiKf-f-------Pm~G----l~~leE~~avAkA~a~~g~~l 180 (218)
T PF07071_consen 137 VETAIAMLKDMGGSSIKF-F-------PMGG----LKHLEELKAVAKACARNGFTL 180 (218)
T ss_dssp HHHHHHHHHHTT--EEEE-----------TT----TTTHHHHHHHHHHHHHCT-EE
T ss_pred HHHHHHHHHHcCCCeeeE-e-------ecCC----cccHHHHHHHHHHHHHcCcee
Confidence 378899999999999996 1 1111 236889999999999999986
No 262
>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5.3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A ....
Probab=41.09 E-value=97 Score=27.57 Aligned_cols=55 Identities=16% Similarity=0.192 Sum_probs=38.9
Q ss_pred cCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCC
Q 019395 63 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 125 (341)
Q Consensus 63 ~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~ 125 (341)
.-|--...|++.|++.|=|..+=- . .+-.+.-+.+.+-++.|.++||.+||.+-.
T Consensus 72 TGevS~~mL~d~G~~~viiGHSER-R-------~~f~Etd~~i~~Kv~~al~~gl~pIvCvGE 126 (244)
T PF00121_consen 72 TGEVSAEMLKDLGCKYVIIGHSER-R-------QYFGETDEIINKKVKAALENGLTPIVCVGE 126 (244)
T ss_dssp TTHHBHHHHHHTTESEEEESCHHH-H-------HHST-BHHHHHHHHHHHHHTT-EEEEEESS
T ss_pred HHHhHHHHHHHhhCCEEEeccccc-c-------CccccccHHHHHHHHHHHHCCCEEEEEecc
Confidence 346677889999999998865421 1 111234578889999999999999998653
No 263
>PRK10673 acyl-CoA esterase; Provisional
Probab=40.88 E-value=82 Score=27.20 Aligned_cols=60 Identities=13% Similarity=0.208 Sum_probs=33.1
Q ss_pred HHHHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCceEEEeCCCCC
Q 019395 158 DFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRLGP 217 (341)
Q Consensus 158 ~~la~~y~~~~~v~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~v~~~~~~~~ 217 (341)
..++.++...-.|+.+|+-.=-.........+..+.+.+...|.+.+.+..++++-++|+
T Consensus 33 ~~~~~~l~~~~~vi~~D~~G~G~s~~~~~~~~~~~~~d~~~~l~~l~~~~~~lvGhS~Gg 92 (255)
T PRK10673 33 GVLARDLVNDHDIIQVDMRNHGLSPRDPVMNYPAMAQDLLDTLDALQIEKATFIGHSMGG 92 (255)
T ss_pred HHHHHHHhhCCeEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceEEEEECHHH
Confidence 334444433347777887531100011123456677777778887777767777754543
No 264
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=40.73 E-value=96 Score=27.79 Aligned_cols=24 Identities=29% Similarity=0.643 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHcCCeEEEecCCC
Q 019395 103 KVLDNAFDWAEKYGVKVIVDLHAA 126 (341)
Q Consensus 103 ~~ld~~i~~a~~~gi~vildlh~~ 126 (341)
+.+.++++.|++.|+.+++|+|..
T Consensus 147 ~~l~~li~~a~~lGl~~lvevh~~ 170 (260)
T PRK00278 147 EQLKELLDYAHSLGLDVLVEVHDE 170 (260)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCH
Confidence 579999999999999999999975
No 265
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=40.67 E-value=46 Score=30.48 Aligned_cols=58 Identities=26% Similarity=0.283 Sum_probs=38.5
Q ss_pred HHHHHHHHHCCCCEEEcCccccccc--CCCCCCCcc-----cchHHHHHHHHHHHHHcCCeEEEec
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIAN--DPTPPKPFV-----GGSSKVLDNAFDWAEKYGVKVIVDL 123 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~--~~~~~~~~~-----~~~l~~ld~~i~~a~~~gi~vildl 123 (341)
++-|+.||+.|+|++-+.+--...+ -+.. .++. ..-+..+..+|+.|++.|||+|--+
T Consensus 80 de~fk~ikdn~~Na~ViD~Kdd~G~lty~s~-d~~~~~~~sv~~f~Di~~~iKkaKe~giY~IARi 144 (400)
T COG1306 80 DELFKLIKDNNINAFVIDVKDDYGELTYPSS-DEINKYTKSVNKFKDIEPVIKKAKENGIYAIARI 144 (400)
T ss_pred HHHHHHHHhCCCCEEEEEecCCCccEecccc-chhhhhhhccccccccHHHHHHHHhcCeEEEEEE
Confidence 6789999999999999866421110 0111 1111 1235667789999999999998644
No 266
>PTZ00066 pyruvate kinase; Provisional
Probab=40.42 E-value=33 Score=33.99 Aligned_cols=53 Identities=19% Similarity=0.234 Sum_probs=33.9
Q ss_pred CHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHH---HcCCeEEEecCCC
Q 019395 64 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAE---KYGVKVIVDLHAA 126 (341)
Q Consensus 64 ~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~---~~gi~vildlh~~ 126 (341)
+++-++.|-..|+|.+||.+++- .. +...+.++.+=+.++ .+.+.+++|+-+.
T Consensus 52 ~~e~l~~mi~aGm~v~RlN~SHg---------~~-e~~~~~i~~vR~~~~~~~~~~iaIl~Dl~GP 107 (513)
T PTZ00066 52 NVETLVKLIDAGMNICRFNFSHG---------DH-ESHKKTLNNVREAAKARPNANLGILLDTKGP 107 (513)
T ss_pred CHHHHHHHHHcCCCEEEEECCCC---------CH-HHHHHHHHHHHHHHHhcCCCceEEEeeCCCC
Confidence 47899999999999999988641 11 112333333323333 3567899998765
No 267
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=40.40 E-value=1.1e+02 Score=28.32 Aligned_cols=57 Identities=21% Similarity=0.155 Sum_probs=36.7
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEe
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVD 122 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vild 122 (341)
++.++.+++.|.+.|++-+..- ...+........-..+.+.++++.|+++|+.|.+=
T Consensus 123 ~~~v~~~~~~G~~~iK~~~~g~-~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H 179 (342)
T cd01299 123 RAAVREQLRRGADQIKIMATGG-VLSPGDPPPDTQFSEEELRAIVDEAHKAGLYVAAH 179 (342)
T ss_pred HHHHHHHHHhCCCEEEEeccCC-cCCCCCCCcccCcCHHHHHHHHHHHHHcCCEEEEE
Confidence 5677888889999999966431 11111110000113578899999999999986653
No 268
>PLN02461 Probable pyruvate kinase
Probab=40.35 E-value=69 Score=31.84 Aligned_cols=53 Identities=19% Similarity=0.184 Sum_probs=34.5
Q ss_pred CHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcC--CeEEEecCCC
Q 019395 64 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYG--VKVIVDLHAA 126 (341)
Q Consensus 64 ~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~g--i~vildlh~~ 126 (341)
+++-++.|-..|+|.+||.+++- .. +...+.++.+-+...+.| +.+++|+-+.
T Consensus 35 ~~e~l~~li~aGm~v~RlN~SHg---------~~-e~h~~~i~~vr~~~~~~g~~i~Il~Dl~GP 89 (511)
T PLN02461 35 SVPMLEKLLRAGMNVARFNFSHG---------SH-EYHQETLDNLRQAMANTGILCAVMLDTKGP 89 (511)
T ss_pred CHHHHHHHHHcCCCEEEEECCCC---------CH-HHHHHHHHHHHHHHHHcCCCeEEEeeCCCC
Confidence 37889999999999999988651 11 112334444444444544 6688888754
No 269
>cd06413 GH25_muramidase_1 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=40.28 E-value=2.2e+02 Score=23.90 Aligned_cols=118 Identities=13% Similarity=0.062 Sum_probs=65.7
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCCccC
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQE 144 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~~ 144 (341)
.-|++.+|+.|+..|=|-... +..+.. ..+.+-++.|++.||.|=+ -++....
T Consensus 14 ~id~~~vk~~gi~fviiKate--------G~~~~D---~~~~~~~~~a~~~Gl~vG~--Yhy~~~~-------------- 66 (191)
T cd06413 14 DIDWARVRAQGVSFAYIKATE--------GGDHVD---KRFAENWRGARAAGLPRGA--YHFFTFC-------------- 66 (191)
T ss_pred CcCHHHHHhCCCcEEEEEEcC--------CCCccC---HHHHHHHHHHHHcCCceEE--EEEEecC--------------
Confidence 347899999998877664421 111211 5577788899999997533 2221000
Q ss_pred CchhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCceEEEe
Q 019395 145 WGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMS 212 (341)
Q Consensus 145 w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~v~~~ 212 (341)
....+++..+++.+...-.+.|-++=+|-..... ...+...+.++.++.++.|++.....+++..
T Consensus 67 --~~~~~qA~~f~~~~~~~~~~~~~~lD~E~~~~~~-~~~~~~~~~~~~~~f~~~v~~~~G~~~~iY~ 131 (191)
T cd06413 67 --RSGAEQAANFIRNVPKDPGALPPVVDVEWNGNSA-TCPSAEEVLAELQVFLDALEAHYGKRPIIYT 131 (191)
T ss_pred --CCHHHHHHHHHHhcCCCCCcCCeEEEEEecCCCC-CCCCHHHHHHHHHHHHHHHHHHHCCCeEEEe
Confidence 0123444556665543223334444444321111 1235567888899999999986544555554
No 270
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=40.09 E-value=2.9e+02 Score=25.10 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHcCCeEEEecCCCC
Q 019395 102 SKVLDNAFDWAEKYGVKVIVDLHAAP 127 (341)
Q Consensus 102 l~~ld~~i~~a~~~gi~vildlh~~~ 127 (341)
-..|..-|+.|++.|++|+|.+=+..
T Consensus 58 c~~~~~dI~~cq~~G~KVlLSIGG~~ 83 (280)
T cd02877 58 CPQLGADIKHCQSKGKKVLLSIGGAG 83 (280)
T ss_pred chhHHHHHHHHHHCCCEEEEEccCCC
Confidence 35788999999999999999987664
No 271
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=39.96 E-value=1.2e+02 Score=30.84 Aligned_cols=53 Identities=21% Similarity=0.241 Sum_probs=40.5
Q ss_pred HHhhccCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecC
Q 019395 58 HWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 124 (341)
Q Consensus 58 ~~~~~~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh 124 (341)
|+..-+.+.+++..++.|++.||+..+-. .++.+.+.++.++++|+.|...+.
T Consensus 92 ~ypd~vv~~~v~~A~~~Gvd~irif~~ln--------------d~~n~~~~i~~ak~~G~~v~~~i~ 144 (592)
T PRK09282 92 HYPDDVVEKFVEKAAENGIDIFRIFDALN--------------DVRNMEVAIKAAKKAGAHVQGTIS 144 (592)
T ss_pred cccchhhHHHHHHHHHCCCCEEEEEEecC--------------hHHHHHHHHHHHHHcCCEEEEEEE
Confidence 34444568899999999999999854320 136788899999999999887763
No 272
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=39.91 E-value=3.5e+02 Score=28.58 Aligned_cols=149 Identities=15% Similarity=0.134 Sum_probs=82.0
Q ss_pred ccCHHHHHHHHHCC------CCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCC--C----
Q 019395 62 YITDEDFKFLSSNG------INAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPG--S---- 129 (341)
Q Consensus 62 ~~~e~d~~~i~~~G------~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g--~---- 129 (341)
+-+++++..+.+.. +.+|+|-+.+| .+.-..-.+++..+...+.+|+..++.||++|+-+.-.-. +
T Consensus 276 ~~~e~~v~~~i~~~~~~~IP~d~~~lD~~~~--~~~~~~F~wd~~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~d~~~~~ 353 (772)
T COG1501 276 YYDEDEVLEFIDEMRERDIPLDVFVLDIDFW--MDNWGDFTWDPDRFPDPKQMIAELHEKGIKLIVIINPYIKQDSPLFK 353 (772)
T ss_pred cccHHHHHHHHhhcccccCcceEEEEeehhh--hccccceEECcccCCCHHHHHHHHHhcCceEEEEeccccccCCchHH
Confidence 34566666654433 66777776422 2111112445556666779999999999998876542211 0
Q ss_pred ---CCCC---CCCCCCCCccCCc------hhHHHHHHHHHH-HHHHHhCCCCceeEEEeecCCCCCC-------CChHH-
Q 019395 130 ---QNGN---EHSATRDGFQEWG------DSNVADTVAVID-FLAARYANRPSLAAIELINEPLAPG-------VALDT- 188 (341)
Q Consensus 130 ---~~~~---~~~g~~~~~~~w~------~~~~~~~~~~~~-~la~~y~~~~~v~~~el~NEP~~~~-------~~~~~- 188 (341)
.++. +..|.......|. +..-....++|. ...+.+.+......|-=+|||.... .+...
T Consensus 354 e~~~~Gy~~k~~~g~~~~~~~w~~~~a~~DFtnp~~r~Ww~~~~~~~l~d~Gv~g~W~D~nEp~~~~~~~~~~g~~~~~~ 433 (772)
T COG1501 354 EAIEKGYFVKDPDGEIYQADFWPGNSAFPDFTNPDAREWWASDKKKNLLDLGVDGFWNDMNEPEPFDGDGFGNGIDHEEM 433 (772)
T ss_pred HHHHCCeEEECCCCCEeeecccCCcccccCCCCHHHHHHHHHHHHhHHHhcCccEEEccCCCCccccccccccccCHHHH
Confidence 0110 0111111112232 223344556666 4556666665555577899998631 12222
Q ss_pred ----HHHHHHHHHHHHHhcCC-CceEEEe
Q 019395 189 ----LKSYYKAGYDAVRKYTS-TAYVIMS 212 (341)
Q Consensus 189 ----~~~~~~~~~~aIR~~~p-~~~v~~~ 212 (341)
-.-+++..++++|+..| ..+++++
T Consensus 434 ~N~yp~~~~~a~~~~~~~~~~~~r~~~ls 462 (772)
T COG1501 434 HNLYPLLYAKAVYEALKELGGNERPFILS 462 (772)
T ss_pred hcchhHHHHHHHHHHHHhhcCCCceEEEE
Confidence 23457788899999965 4777776
No 273
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=39.29 E-value=1.1e+02 Score=28.55 Aligned_cols=100 Identities=11% Similarity=0.068 Sum_probs=52.1
Q ss_pred HHHHHCC--CCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCCccCCc
Q 019395 69 KFLSSNG--INAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWG 146 (341)
Q Consensus 69 ~~i~~~G--~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~~w~ 146 (341)
+.+++.+ +++|=|-+.|+. ....-.+++..+...+.+++.+++.|+++++.+|-.-. .+....+ ....+++.
T Consensus 31 ~~~r~~~IP~D~i~lDidy~~---~~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~--~g~~~~~-~~~~pDft 104 (332)
T cd06601 31 EGYRDNNIPLDGLHVDVDFQD---NYRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVIS--YGGGLGS-PGLYPDLG 104 (332)
T ss_pred HHHHHcCCCCceEEEcCchhc---CCCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCcee--cCccCCC-CceeeCCC
Confidence 3344445 455555555532 11222344555666788999999999999887763321 1111111 11223343
Q ss_pred -hhHHHHHHHHHHHHHHHhC--CCCceeEEEeecCCC
Q 019395 147 -DSNVADTVAVIDFLAARYA--NRPSLAAIELINEPL 180 (341)
Q Consensus 147 -~~~~~~~~~~~~~la~~y~--~~~~v~~~el~NEP~ 180 (341)
++..+ +|..+.+.+. +...+ |-=+|||.
T Consensus 105 np~ar~----wW~~~~~~l~~~Gv~~~--W~DmnEp~ 135 (332)
T cd06601 105 RPDVRE----WWGNQYKYLFDIGLEFV--WQDMTTPA 135 (332)
T ss_pred CHHHHH----HHHHHHHHHHhCCCcee--ecCCCCcc
Confidence 44444 4555444443 32333 55789986
No 274
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=39.23 E-value=41 Score=27.57 Aligned_cols=60 Identities=22% Similarity=0.183 Sum_probs=40.7
Q ss_pred CHHHHHHHHHCCCCEEEcCcccccccCCCCCCCc--ccchHHHHHHHHHHHHHcCCeEEEecCCC
Q 019395 64 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF--VGGSSKVLDNAFDWAEKYGVKVIVDLHAA 126 (341)
Q Consensus 64 ~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~--~~~~l~~ld~~i~~a~~~gi~vildlh~~ 126 (341)
+++.++.|+++|+..|.+++.-. ++.....+ ....++..-+.++.+.++|+.|.+.+--.
T Consensus 87 ~~~~~~~l~~~g~~~i~i~le~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~g 148 (204)
T cd01335 87 TEELLKELKELGLDGVGVSLDSG---DEEVADKIRGSGESFKERLEALKELREAGLGLSTTLLVG 148 (204)
T ss_pred CHHHHHHHHhCCCceEEEEcccC---CHHHHHHHhcCCcCHHHHHHHHHHHHHcCCCceEEEEEe
Confidence 68999999999999999887421 11000000 12346777788888888899887776644
No 275
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=39.19 E-value=2.4e+02 Score=23.83 Aligned_cols=121 Identities=10% Similarity=0.110 Sum_probs=66.5
Q ss_pred HhhccCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCC
Q 019395 59 WDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSAT 138 (341)
Q Consensus 59 ~~~~~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~ 138 (341)
|...|+..|++.+|+.|+..|=|-+. +. ..+.. ..+.+-++.|++.||.|=+ -++....+
T Consensus 9 ~Qg~i~~~dw~~vk~~Gi~faiikat-----eG---~~~~D---~~~~~n~~~A~~aGl~vG~--Yhf~~~~~------- 68 (192)
T cd06522 9 NNGIMSVADYNKLKNYGVKAVIVKLT-----EG---TTYRN---PYAASQIANAKAAGLKVSA--YHYAHYTS------- 68 (192)
T ss_pred CCCCccHHHHHHHHHcCCCEEEEEEc-----CC---CCccC---hHHHHHHHHHHHCCCeeEE--EEEEecCC-------
Confidence 44456677999999999985544222 11 11211 4467889999999996433 33211100
Q ss_pred CCCccCCchhHHHHHHHHHHHHHHHhCC-CCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCceEEEe
Q 019395 139 RDGFQEWGDSNVADTVAVIDFLAARYAN-RPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMS 212 (341)
Q Consensus 139 ~~~~~~w~~~~~~~~~~~~~~la~~y~~-~~~v~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~v~~~ 212 (341)
....++.+..+++.+. .+.- .+.++.+|+ |... ....+.++..+.++.|++.+-..+++..
T Consensus 69 -------~~~a~~eA~~f~~~~~-~~~~~~~~~~~lD~--E~~~---~~~~~~~~~~~F~~~v~~~g~~~~~iY~ 130 (192)
T cd06522 69 -------AADAQAEARYFANTAK-SLGLSKNTVMVADM--EDSS---SSGNATANVNAFWQTMKAAGYKNTDVYT 130 (192)
T ss_pred -------hHHHHHHHHHHHHHHH-HcCCCCCCceEEEe--ecCC---CcchHHHHHHHHHHHHHHcCCCCcEEEc
Confidence 0133444445555553 3321 122333443 2221 1346777788888899988765556554
No 276
>PF02208 Sorb: Sorbin homologous domain; InterPro: IPR003127 Sorbin is an active peptide present in the digestive tract, where it has pro-absorptive and anti-secretory effects in different parts of the intestine, including the ability to decrease VIP (vasoactive intestinal peptide) and cholera toxin-induced secretion. It is expressed in some intestinal and pancreatic endocrine tumours in humans []. Sorbin-homology domains are found in adaptor proteins such as vinexin, CAP/ponsin and argBP2, which regulate various cellular functions, including cell adhesion, cytoskeletal organisation, and growth factor signalling []. In addition to the sorbin domain, these proteins contain three SH3 (src homology 3) domains. The sorbin homology domain mediates the interaction of vinexin and CAP with flotillin, which is crucial for the localisation of SH3-binding proteins to the lipid raft, a region of the plasma membrane rich in cholesterol and sphingolipids that acts to concentrate certain signalling molecules. The sorbin homology domain of adaptor proteins may mediate interactions with the lipid raft that are crucial to intracellular communication [].
Probab=39.01 E-value=32 Score=21.75 Aligned_cols=37 Identities=24% Similarity=0.422 Sum_probs=27.1
Q ss_pred CceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcC
Q 019395 168 PSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYT 204 (341)
Q Consensus 168 ~~v~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~ 204 (341)
|...|+..++|...+-.+.+.-+.||+.|++.|+.+.
T Consensus 4 p~y~gigp~De~giP~~~vd~~kDWYktMFkqIHk~~ 40 (47)
T PF02208_consen 4 PHYEGIGPVDESGIPLSNVDRPKDWYKTMFKQIHKLH 40 (47)
T ss_pred CcCCCcCccccCCCccccccchhHHHHHHHHHHHhhc
Confidence 3444556788876654555778899999999998765
No 277
>PRK06739 pyruvate kinase; Validated
Probab=38.96 E-value=68 Score=30.23 Aligned_cols=51 Identities=20% Similarity=0.272 Sum_probs=32.9
Q ss_pred CHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCC
Q 019395 64 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA 126 (341)
Q Consensus 64 ~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~ 126 (341)
+++-++.|-++|+|.+||.+++- .+ +....+-+.|+.+.+. +.+++|+-+.
T Consensus 15 ~~e~l~~Li~aGm~v~RlNfSHG---------s~--e~h~~~i~~vR~~~~~-vaIl~Dl~GP 65 (352)
T PRK06739 15 NKETLAQLINNGMKIVRLNLSHG---------TH--ESHKDIIRLVKSLDDS-IKILGDVQGP 65 (352)
T ss_pred CHHHHHHHHHCCCCEEEEECCCC---------CH--HHHHHHHHHHHHhhhh-cceeecCCCC
Confidence 37889999999999999988752 11 1222222333333333 8889998754
No 278
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=38.95 E-value=76 Score=31.33 Aligned_cols=53 Identities=26% Similarity=0.317 Sum_probs=34.2
Q ss_pred CHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcC--CeEEEecCCC
Q 019395 64 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYG--VKVIVDLHAA 126 (341)
Q Consensus 64 ~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~g--i~vildlh~~ 126 (341)
+++-++.|-..|+|.+||.+++- .. +...+.++.+=+..++.| +.+++||-+.
T Consensus 16 ~~e~l~~li~aG~~v~RiN~sHg---------~~-~~~~~~i~~vr~~~~~~~~~i~il~Dl~Gp 70 (480)
T cd00288 16 SVENLKKLIKAGMNVARMNFSHG---------SH-EYHQSRIDNVREAAEKTGGPVAIALDTKGP 70 (480)
T ss_pred CHHHHHHHHHcCCCEEEEEcCCC---------CH-HHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 37889999999999999988651 11 112333433334444444 5688888754
No 279
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=38.86 E-value=97 Score=23.31 Aligned_cols=46 Identities=22% Similarity=0.219 Sum_probs=33.9
Q ss_pred cCHHHHHHHHHC-CCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEE
Q 019395 63 ITDEDFKFLSSN-GINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIV 121 (341)
Q Consensus 63 ~~e~d~~~i~~~-G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vil 121 (341)
.+..|++.+-+. .++.|++-+.. -+.+....++.+.|+++|+.+++
T Consensus 5 ~~~~~~~~li~~~a~d~~~~~~~~-------------~GGit~~~~i~~~A~~~gi~~~~ 51 (111)
T PF13378_consen 5 FSLHDFRRLIEAGAVDIVQIDPTR-------------CGGITEALRIAALAEAHGIPVMP 51 (111)
T ss_dssp SSHHHHHHHHHTTSCSEEEEBHHH-------------HTSHHHHHHHHHHHHHTT-EEEE
T ss_pred CCHHHHHHHHHcCCCCEEEeCchh-------------cCCHHHHHHHHHHHHHhCCCEEe
Confidence 456777777665 47888875533 23578899999999999999776
No 280
>PRK06247 pyruvate kinase; Provisional
Probab=38.78 E-value=78 Score=31.18 Aligned_cols=53 Identities=9% Similarity=0.226 Sum_probs=33.3
Q ss_pred CHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHc--CCeEEEecCCC
Q 019395 64 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKY--GVKVIVDLHAA 126 (341)
Q Consensus 64 ~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~--gi~vildlh~~ 126 (341)
+++-++.|-+.|+|.+||.+++- .. +...+.++.+=+..++. .+.+++||-+.
T Consensus 19 ~~e~l~~li~aGm~v~RlN~SHg---------~~-e~~~~~i~~vr~~~~~~~~~i~Il~Dl~Gp 73 (476)
T PRK06247 19 SEDMIRKLVEAGADVFRLNFSHG---------DH-DDHRELYKRIREVEDETGRPIGILADLQGP 73 (476)
T ss_pred CHHHHHHHHHCCCCEEEEECCCC---------CH-HHHHHHHHHHHHHHHHcCCCeeEEEeCCCC
Confidence 37889999999999999988641 11 11223333333333343 46688998765
No 281
>PLN02762 pyruvate kinase complex alpha subunit
Probab=38.66 E-value=41 Score=33.37 Aligned_cols=53 Identities=19% Similarity=0.245 Sum_probs=34.0
Q ss_pred CHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHH--cCCeEEEecCCC
Q 019395 64 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEK--YGVKVIVDLHAA 126 (341)
Q Consensus 64 ~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~--~gi~vildlh~~ 126 (341)
+++-++.|-+.|+|.+||.+++- .. +...+.++.+=+.+++ ..+.+++|+-+.
T Consensus 39 ~~e~l~~li~aGm~v~RlNfSHg---------~~-e~h~~~i~~iR~~~~~~~~~vaIl~Dl~GP 93 (509)
T PLN02762 39 GFEQLEALAMGGMNVARLNMCHG---------TR-EWHRDVIRRVRRLNEEKGFAVAVMMDTEGS 93 (509)
T ss_pred CHHHHHHHHHCCCCEEEEECCCC---------CH-HHHHHHHHHHHHHHHHcCCceEEEecCCCC
Confidence 47889999999999999988752 11 1123333333333333 457788898754
No 282
>PRK10425 DNase TatD; Provisional
Probab=38.44 E-value=1.9e+02 Score=25.84 Aligned_cols=43 Identities=16% Similarity=0.176 Sum_probs=24.7
Q ss_pred ceEEEeecCCCCCCCCCHHHHHHHHHHHHHHHccCCCcEEEec
Q 019395 277 LTFVGEWTCEWNVKDASKQDYQRFANAQLDVYGRATFGWAYWA 319 (341)
Q Consensus 277 pv~vGE~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~W~ 319 (341)
.+-|||-|..+.......+...++++.|++.-.+.+..-...+
T Consensus 86 ~vaIGEiGLDy~~~~~~~~~Q~~vF~~ql~lA~~~~~Pv~iH~ 128 (258)
T PRK10425 86 VVAIGECGLDFNRNFSTPEEQERAFVAQLAIAAELNMPVFMHC 128 (258)
T ss_pred EEEEeeeeeccccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 4789999987543223455555667777665444444444443
No 283
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=38.19 E-value=2.6e+02 Score=24.10 Aligned_cols=49 Identities=10% Similarity=0.080 Sum_probs=36.3
Q ss_pred cCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEec
Q 019395 63 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDL 123 (341)
Q Consensus 63 ~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildl 123 (341)
.-|--.+.|+++|++.|=|..+=-+ +.+.. +.+-++.|.++||.+||.+
T Consensus 69 TGevS~~mLkd~G~~~viiGHSERR---------f~Etd---i~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 69 TGEISAEMLKDIGAKGTLINHSERR---------MKLAD---IEKKIARLKELGLTSVVCT 117 (205)
T ss_pred cCcCCHHHHHHcCCCEEEECcccCC---------CCccH---HHHHHHHHHHCCCEEEEEE
Confidence 3456677899999999987654211 22222 7888999999999999988
No 284
>PF10035 DUF2179: Uncharacterized protein conserved in bacteria (DUF2179); InterPro: IPR019264 This entry, found mostly in hypothetical bacterial proteins, has no known function. ; PDB: 3HLU_B.
Probab=37.40 E-value=38 Score=22.15 Aligned_cols=21 Identities=10% Similarity=0.221 Sum_probs=14.7
Q ss_pred HHHHHHHHHhcCCCceEEEeC
Q 019395 193 YKAGYDAVRKYTSTAYVIMSN 213 (341)
Q Consensus 193 ~~~~~~aIR~~~p~~~v~~~~ 213 (341)
+.++.+.|++.||+..|++.+
T Consensus 29 ~~~l~~~I~~~Dp~AFi~v~~ 49 (55)
T PF10035_consen 29 LPKLKKIIKEIDPKAFISVSD 49 (55)
T ss_dssp HHHHHHHHHCC-TT-EEEE--
T ss_pred HHHHHHHHHHhCCCEEEEEEc
Confidence 457788999999999999864
No 285
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=36.96 E-value=45 Score=33.03 Aligned_cols=63 Identities=14% Similarity=0.156 Sum_probs=40.5
Q ss_pred cCCCceEEEeecCCCCC-----------CCCCHHHHHHHHHHHHHHHcc---CCCcEEEeccccCCCCCChHHHHHCC
Q 019395 273 SNGPLTFVGEWTCEWNV-----------KDASKQDYQRFANAQLDVYGR---ATFGWAYWAHKCEANHWSLKWMIENG 336 (341)
Q Consensus 273 ~~~~pv~vGE~g~~~~~-----------~~~~~~~~~~~~~~~~~~~~~---~~~Gw~~W~~k~~~~~W~~~~~~~~g 336 (341)
.+.|||+|.|-|..-.. +....+.+.+++.+...+... .--|+|.|++-. +-+|.-...+.-|
T Consensus 405 Y~np~iyItENG~~d~~~~~~~~~~~l~D~~Ri~Y~~~~L~~~~kAi~~dgvnv~GYf~WSLmD-nfEw~~Gy~~RFG 481 (524)
T KOG0626|consen 405 YGNPPIYITENGFDDLDGGTKSLEVALKDTKRIEYLQNHLQAVLKAIKEDGVNVKGYFVWSLLD-NFEWLDGYKVRFG 481 (524)
T ss_pred cCCCcEEEEeCCCCcccccccchhhhhcchHHHHHHHHHHHHHHHHHHhcCCceeeEEEeEccc-chhhhcCcccccc
Confidence 35789999999975421 112234566778888887652 567999999963 3566544444444
No 286
>KOG4701 consensus Chitinase [Cell wall/membrane/envelope biogenesis]
Probab=36.92 E-value=3.8e+02 Score=25.58 Aligned_cols=122 Identities=12% Similarity=0.146 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCCccCCchhHHHHHHHHHHHHHHH---hC--CCCceeEEEeec
Q 019395 103 KVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAAR---YA--NRPSLAAIELIN 177 (341)
Q Consensus 103 ~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~~w~~~~~~~~~~~~~~la~~---y~--~~~~v~~~el~N 177 (341)
-.+..-|+-|..+||+|+|.|-+.-|...- +.+ .+...-...+|..+-.- ++ +...|-|||.-=
T Consensus 90 Tqi~~di~~CQS~GiKVlLSLGG~~GnYs~----~~d-------~dA~~fA~~LWn~Fg~G~~S~RPfg~AVvDGfDF~I 158 (568)
T KOG4701|consen 90 TQIETDIQVCQSNGIKVLLSLGGYNGNYSL----NND-------DDATNFAFQLWNIFGSGEDSYRPFGKAVVDGFDFEI 158 (568)
T ss_pred chhhhHHHHHHhcCeEEEEeccCcccceee----ccc-------hhHHHHHHHHHHHhcCCccccCcccchhccceeeee
Confidence 356678899999999999999876543110 100 11112222445444321 11 223456666655
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCChhhhhhc-cCCCCcEEEEeeecC
Q 019395 178 EPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRLGPADHKELLSF-ASGLSRVVIDVHYYN 241 (341)
Q Consensus 178 EP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~v~~~~~~~~~~~~~~~~~-~~~~~~~v~~~H~Y~ 241 (341)
|-.. ...|-.+++++ ..+-+.+|+++.+-..+.. ..++..+.. +.......+.+.+|.
T Consensus 159 E~g~----~~~ysaLA~~L-~~~Fa~~~r~yYLsaAPQC-P~PD~~~G~aL~~~~fDf~~IQFYN 217 (568)
T KOG4701|consen 159 EKGT----NTAYSALAKRL-LEIFASDPRRYYLSAAPQC-PVPDHTLGKALSENSFDFLSIQFYN 217 (568)
T ss_pred ecCC----cchHHHHHHHH-HHHHccCCceEEeccCCCC-CCCchhhhhhhhccccceEEEEeec
Confidence 5442 23444444443 3344567766555444333 233343332 223334455556664
No 287
>PLN02765 pyruvate kinase
Probab=36.68 E-value=88 Score=31.23 Aligned_cols=53 Identities=15% Similarity=0.140 Sum_probs=33.8
Q ss_pred CHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcC--CeEEEecCCC
Q 019395 64 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYG--VKVIVDLHAA 126 (341)
Q Consensus 64 ~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~g--i~vildlh~~ 126 (341)
+++-++.|-+.|+|.+||.+++- .+ +...+.++.+=+.+++.| +.+++|+-+.
T Consensus 42 ~~e~l~~li~aGm~v~RlNfSHg---------~~-e~h~~~i~~vR~~~~~~~~~vaIl~Dl~GP 96 (526)
T PLN02765 42 SVEVIEACLKAGMSVARFDFSWG---------DA-EYHQETLENLKIAVKNTKKLCAVMLDTVGP 96 (526)
T ss_pred CHHHHHHHHHCCCCEEEEECCCC---------CH-HHHHHHHHHHHHHHHHhCCCeEEEecCCCC
Confidence 47899999999999999988652 11 112333333333444443 5678888754
No 288
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=36.38 E-value=78 Score=32.85 Aligned_cols=56 Identities=20% Similarity=0.277 Sum_probs=40.5
Q ss_pred HHHHHHHHHCCCCEEEcCcccc---------cccCCCCCCCccc--chHHHHHHHHHHHHHcCCeEEEec
Q 019395 65 DEDFKFLSSNGINAVRIPVGWW---------IANDPTPPKPFVG--GSSKVLDNAFDWAEKYGVKVIVDL 123 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~---------~~~~~~~~~~~~~--~~l~~ld~~i~~a~~~gi~vildl 123 (341)
.+-+.+++++|+.++=++=-+- ...+| ..+++ ++.+-+.+++..++++||.+|+|+
T Consensus 22 ~~~l~yl~~LGIShLY~SPIftA~pGStHGYDVvD~---t~InPeLGG~egl~rLvaalk~~GlGlI~DI 88 (889)
T COG3280 22 RALLDYLADLGISHLYLSPIFTARPGSTHGYDVVDP---TEINPELGGEEGLERLVAALKSRGLGLIVDI 88 (889)
T ss_pred HHhhHHHHhcCchheeccchhhcCCCCCCCccCCCc---cccChhhcChHHHHHHHHHHHhcCCceEEEe
Confidence 5678899999999988742111 11122 12223 478999999999999999999997
No 289
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=36.32 E-value=38 Score=30.28 Aligned_cols=49 Identities=27% Similarity=0.373 Sum_probs=35.7
Q ss_pred CHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCC
Q 019395 64 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA 126 (341)
Q Consensus 64 ~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~ 126 (341)
.+-.+..-+.+|.++|=|.+. ..+ =+.+.++++.|++.||.|++..|..
T Consensus 118 D~yQI~~Ar~~GADavLLI~~---~L~-----------~~~l~el~~~A~~LGm~~LVEVh~~ 166 (254)
T COG0134 118 DPYQIYEARAAGADAVLLIVA---ALD-----------DEQLEELVDRAHELGMEVLVEVHNE 166 (254)
T ss_pred CHHHHHHHHHcCcccHHHHHH---hcC-----------HHHHHHHHHHHHHcCCeeEEEECCH
Confidence 456666666777777766542 111 1468899999999999999999964
No 290
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=36.23 E-value=1.1e+02 Score=26.01 Aligned_cols=45 Identities=22% Similarity=0.183 Sum_probs=34.5
Q ss_pred HHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCC
Q 019395 67 DFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA 126 (341)
Q Consensus 67 d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~ 126 (341)
+++.++++|.+.|=++.. .+ -..+.++++.|+++|+.+++++++.
T Consensus 68 ~~~~~~~~Gad~i~vh~~-----~~----------~~~~~~~i~~~~~~g~~~~~~~~~~ 112 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGV-----AD----------DATIKGAVKAAKKHGKEVQVDLINV 112 (206)
T ss_pred HHHHHHHcCCCEEEEecc-----CC----------HHHHHHHHHHHHHcCCEEEEEecCC
Confidence 588889999998876531 00 1346789999999999999988763
No 291
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=36.21 E-value=1.2e+02 Score=28.32 Aligned_cols=62 Identities=19% Similarity=0.354 Sum_probs=47.8
Q ss_pred ccCHHHHHHHHHCCCCEEEcCcccccccCCCC------CCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCCC
Q 019395 62 YITDEDFKFLSSNGINAVRIPVGWWIANDPTP------PKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGS 129 (341)
Q Consensus 62 ~~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~------~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~ 129 (341)
-.+++-++.|+++|++-+-|+++ ..+|.- -..| .++.+.++++++.+.||.|+|..--.||-
T Consensus 201 ~L~~~lv~eLeeAGLdRiNlSv~---aLDpk~Ak~L~G~~dY---dv~kvle~aE~i~~a~idvlIaPv~lPG~ 268 (414)
T COG2100 201 LLSKKLVDELEEAGLDRINLSVD---ALDPKLAKMLAGRKDY---DVKKVLEVAEYIANAGIDVLIAPVWLPGV 268 (414)
T ss_pred eccHHHHHHHHHhCCceEEeecc---cCCHHHHHHhcCcccc---CHHHHHHHHHHHHhCCCCEEEeeeecCCc
Confidence 35799999999999999988885 334321 1234 37888999999999999999987777753
No 292
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=36.06 E-value=84 Score=27.98 Aligned_cols=58 Identities=17% Similarity=0.161 Sum_probs=39.3
Q ss_pred HHHHHhhccCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecC
Q 019395 55 LQDHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 124 (341)
Q Consensus 55 ~~~~~~~~~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh 124 (341)
++-.+..--.++.++.++++||++|=|+-+.- .. ..+...++|+.++++|++|+-.+.
T Consensus 77 ~E~a~~q~~~~~yl~~~k~lGf~~IEiSdGti---------~l---~~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 77 FEVAYQQGKFDEYLEECKELGFDAIEISDGTI---------DL---PEEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp HHHHHHTT-HHHHHHHHHHCT-SEEEE--SSS---------------HHHHHHHHHHHCCTTSEEEEEES
T ss_pred HHHHHhcChHHHHHHHHHHcCCCEEEecCCce---------eC---CHHHHHHHHHHHHHCCCEEeeccc
Confidence 34333333348999999999999999865421 11 235677889999999999998876
No 293
>PRK15452 putative protease; Provisional
Probab=35.92 E-value=3.2e+02 Score=26.70 Aligned_cols=58 Identities=19% Similarity=0.208 Sum_probs=40.2
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCC
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAP 127 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~ 127 (341)
-+.++..-+.|.++|=+...-+..-. ....+ .++.|.++|+.|+++|.+|.+.+-..+
T Consensus 13 ~e~l~aAi~~GADaVY~G~~~~~~R~--~~~~f---~~edl~eav~~ah~~g~kvyvt~n~i~ 70 (443)
T PRK15452 13 LKNMRYAFAYGADAVYAGQPRYSLRV--RNNEF---NHENLALGINEAHALGKKFYVVVNIAP 70 (443)
T ss_pred HHHHHHHHHCCCCEEEECCCccchhh--hccCC---CHHHHHHHHHHHHHcCCEEEEEecCcC
Confidence 44555666779999999774221111 11233 257799999999999999999877654
No 294
>PRK00865 glutamate racemase; Provisional
Probab=35.85 E-value=1.7e+02 Score=26.21 Aligned_cols=58 Identities=9% Similarity=0.065 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCceEEEe
Q 019395 154 VAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMS 212 (341)
Q Consensus 154 ~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~v~~~ 212 (341)
..+++.+.+++.+..-+..-|..|=|.+ ..+.+++..+..++++.+.+.+.+.+|+-.
T Consensus 18 Ltvl~~i~~~lp~~~~iY~~D~~~~PYG-~ks~~~i~~~~~~~~~~L~~~g~d~iVIaC 75 (261)
T PRK00865 18 LTVLREIRRLLPDEHIIYVGDTARFPYG-EKSEEEIRERTLEIVEFLLEYGVKMLVIAC 75 (261)
T ss_pred HHHHHHHHHHCCCCCEEEEecCCCCCCC-CCCHHHHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 3588999999999888888999999997 567789999999999999988887766543
No 295
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=35.83 E-value=3.3e+02 Score=24.52 Aligned_cols=78 Identities=22% Similarity=0.343 Sum_probs=48.6
Q ss_pred HHHHHHHHhhccCHHHHHHHHHCCCCEEEcCccccc-ccCC-----CC------CCCcccchHHHHHHHHHHHHHcCCeE
Q 019395 52 PQVLQDHWDSYITDEDFKFLSSNGINAVRIPVGWWI-ANDP-----TP------PKPFVGGSSKVLDNAFDWAEKYGVKV 119 (341)
Q Consensus 52 ~~~~~~~~~~~~~e~d~~~i~~~G~N~VRlpi~~~~-~~~~-----~~------~~~~~~~~l~~ld~~i~~a~~~gi~v 119 (341)
...+.+.|..++..+....+..-|.=++++.=+... .++. .. ......+.++.|++.++.+++.+.+|
T Consensus 137 ~~~~~~~w~~~l~~~~~~~~~~ggYY~~~~~~~l~vI~Lnt~~~~~~~~~~~~~~~~~~~~Ql~WL~~~L~~a~~~~~~v 216 (296)
T cd00842 137 YDALAELWKSWLPEEAEETFKKGGYYSVPVKPGLRVISLNTNLYYKKNFWLLGSNETDPAGQLQWLEDELQEAEQAGEKV 216 (296)
T ss_pred HHHHHHHHHhhcCHHHHHHhhcceEEEEEcCCCeEEEEEeCccccccChhhhccCCCCHHHHHHHHHHHHHHHHHCCCeE
Confidence 345567787788777777776666544442111100 0010 00 01112458999999999999999999
Q ss_pred EEecCCCCCC
Q 019395 120 IVDLHAAPGS 129 (341)
Q Consensus 120 ildlh~~~g~ 129 (341)
+|=.|..|+.
T Consensus 217 ~I~~HiPp~~ 226 (296)
T cd00842 217 WIIGHIPPGV 226 (296)
T ss_pred EEEeccCCCC
Confidence 9989987754
No 296
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=35.70 E-value=3.6e+02 Score=24.96 Aligned_cols=145 Identities=13% Similarity=0.096 Sum_probs=81.5
Q ss_pred HHhhccCHHHHHHHHHCCCCEEEc-Cccc-ccccC---------------C-C-C------CCCcccchHHHHHHHHHHH
Q 019395 58 HWDSYITDEDFKFLSSNGINAVRI-PVGW-WIAND---------------P-T-P------PKPFVGGSSKVLDNAFDWA 112 (341)
Q Consensus 58 ~~~~~~~e~d~~~i~~~G~N~VRl-pi~~-~~~~~---------------~-~-~------~~~~~~~~l~~ld~~i~~a 112 (341)
+|+.+| ++-++.|++.|++.|-+ |+.- ..... + . + +..-++.+++.+.+.|..+
T Consensus 101 y~~P~i-~~~l~~l~~~G~~~iv~lPL~PqyS~~t~gs~~~~~~~~l~~~~~~~~~~~~i~~~~~~p~yi~a~~~~I~~~ 179 (322)
T TIGR00109 101 YGEPFT-EEAVKELLKDGVERAVVLPLYPHFSSSTTGSSFNELAEALKKLRSLRPTISVIESWYDNPKYIKALADSIKET 179 (322)
T ss_pred cCCCCH-HHHHHHHHhcCCCeEEEEeCCcccccccHHHHHHHHHHHHHhcccCCCeEEEeCccccCcHHHHHHHHHHHHH
Confidence 454444 78889999999887765 3320 00000 0 0 0 0011234555555555433
Q ss_pred H-H----cCCeEEEecCCCCCCCCCCCCCCCCCCccCCchhHHHHHHHHHHHHHHHhCC-CCceeEEEeecCCCCCCCCh
Q 019395 113 E-K----YGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYAN-RPSLAAIELINEPLAPGVAL 186 (341)
Q Consensus 113 ~-~----~gi~vildlh~~~g~~~~~~~~g~~~~~~~w~~~~~~~~~~~~~~la~~y~~-~~~v~~~el~NEP~~~~~~~ 186 (341)
. + -...+|+..|+.|-..-. .| +.+.++..+..+.|+++.+. .+...+|+----|.
T Consensus 180 l~~~~~~~~~~llfSaHglP~~~~~---~G---------d~Y~~~~~~ta~~l~~~l~~~~~~~~~fQS~~g~~------ 241 (322)
T TIGR00109 180 LASFPEPDNAVLLFSAHGLPQSYVD---EG---------DPYPAECEATTRLIAEKLGFPNEYRLTWQSRVGPE------ 241 (322)
T ss_pred HHhcCCcCCcEEEEeCCCCchhHhh---CC---------CChHHHHHHHHHHHHHHcCCCCCeEEEEeCCCCCC------
Confidence 1 2 235789999998843211 01 13456777788888888873 34556676532222
Q ss_pred HHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCChh
Q 019395 187 DTLKSYYKAGYDAVRKYTSTAYVIMSNRLGPADHK 221 (341)
Q Consensus 187 ~~~~~~~~~~~~aIR~~~p~~~v~~~~~~~~~~~~ 221 (341)
+.+.....+.+..+.+.+.++++++..+|-+...+
T Consensus 242 ~Wl~P~~~~~l~~l~~~G~k~V~vvP~gFv~D~lE 276 (322)
T TIGR00109 242 PWLGPYTEELLEKLGEQGVQHIVVVPIGFTADHLE 276 (322)
T ss_pred CcCCCCHHHHHHHHHHcCCceEEEECCcccccchh
Confidence 23455666777778777888888887766543333
No 297
>PF02007 MtrH: Tetrahydromethanopterin S-methyltransferase MtrH subunit; InterPro: IPR023467 In archaea the enzyme tetrahydromethanopterin S-methyltransferase is composed of eight subunits, MtrA-H. The enzyme is a membrane- associated enzyme complex which catalyzes an energy-conserving, sodium-ion-translocating step in methanogenesis from hydrogen and carbon dioxide []. Subunit MtrH catalyzes the methylation reaction and was shown to exhibit methyltetrahydromethanopterin:cob(I)alamin methyltransferase activity []. CH3-H4MPT + cob(I)alamin --> H4MPT + CH3-cob(III)alamin (H4MPT = tetrahydromethanopterin); GO: 0008168 methyltransferase activity, 0006730 one-carbon metabolic process
Probab=35.51 E-value=1.5e+02 Score=27.07 Aligned_cols=70 Identities=27% Similarity=0.460 Sum_probs=46.8
Q ss_pred HHHHHHHhhccCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHH--------HHHHHHHHcCCe-EEEec
Q 019395 53 QVLQDHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLD--------NAFDWAEKYGVK-VIVDL 123 (341)
Q Consensus 53 ~~~~~~~~~~~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld--------~~i~~a~~~gi~-vildl 123 (341)
+.+-+.-+..++++.++.|++.++++.=+ ..++|..+ -.++.++.|. -+++.|++-||. ++||.
T Consensus 119 R~IYNSIn~~~~~~EieaLkes~i~aaIv-----LaFn~~d~--s~~gr~~~le~~~~~~~kgll~~a~e~GI~~~LvD~ 191 (296)
T PF02007_consen 119 RAIYNSINMSIEDEEIEALKESDIDAAIV-----LAFNPMDP--SVEGRIEMLENGGGGQDKGLLDIAEECGIENPLVDT 191 (296)
T ss_pred hhhhhcCCCCCCHHHHHHHHhcCCCEEEE-----EecCCCCC--ChhhhHHHHhccCcccccchHHHHHHcCCcceeecc
Confidence 33444445567899999999999999876 23333322 1233444442 377899999995 88898
Q ss_pred CCCCCC
Q 019395 124 HAAPGS 129 (341)
Q Consensus 124 h~~~g~ 129 (341)
-..|-+
T Consensus 192 ~v~plg 197 (296)
T PF02007_consen 192 AVTPLG 197 (296)
T ss_pred cccCCc
Confidence 887643
No 298
>PLN02681 proline dehydrogenase
Probab=35.37 E-value=1.2e+02 Score=29.66 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=23.2
Q ss_pred chHHHHHHHHHHHHHcCCeEEEecCC
Q 019395 100 GSSKVLDNAFDWAEKYGVKVIVDLHA 125 (341)
Q Consensus 100 ~~l~~ld~~i~~a~~~gi~vildlh~ 125 (341)
..+++++++.+.|.++|+.|+||.-.
T Consensus 217 ~~~~rl~~i~~~A~~~gv~l~IDAE~ 242 (455)
T PLN02681 217 LAHERLQKLCERAAQLGVPLLIDAEY 242 (455)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEeCCc
Confidence 46889999999999999999999865
No 299
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=35.35 E-value=3.5e+02 Score=24.67 Aligned_cols=66 Identities=12% Similarity=0.053 Sum_probs=38.3
Q ss_pred CCchhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCC--------CCCCChHHHHHHHHHHHHHHHhcCCCceEEEe
Q 019395 144 EWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPL--------APGVALDTLKSYYKAGYDAVRKYTSTAYVIMS 212 (341)
Q Consensus 144 ~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~--------~~~~~~~~~~~~~~~~~~aIR~~~p~~~v~~~ 212 (341)
.|+++-++.....+++|.+ -+...|. +|++-.=. ..........+|+.++...+|+..|...|+..
T Consensus 119 YW~~eWkdii~~~l~rL~d--~GfdGvy-LD~VD~y~Y~~~~~~~~~~~~~k~m~~~i~~i~~~~ra~~~~~~Vi~q 192 (300)
T COG2342 119 YWEPEWKDIIRSYLDRLID--QGFDGVY-LDVVDAYWYVEWNDRETGVNAAKKMVKFIAAIAEYARAANPLFRVIPQ 192 (300)
T ss_pred ccCHHHHHHHHHHHHHHHH--ccCceEE-EeeechHHHHHHhcccccccHHHHHHHHHHHHHHHHHhcCCcEEEEec
Confidence 3444444545555555544 2334454 55554320 01234567888999999999999999545444
No 300
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=35.35 E-value=3.5e+02 Score=24.74 Aligned_cols=136 Identities=18% Similarity=0.207 Sum_probs=72.8
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcc---------cchHHHHHHHH-HHHHHcCCeEEEecC----CCCCCC
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV---------GGSSKVLDNAF-DWAEKYGVKVIVDLH----AAPGSQ 130 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~---------~~~l~~ld~~i-~~a~~~gi~vildlh----~~~g~~ 130 (341)
..-|++|+++|+|+|=|.. +.+|...+..+ +=.-+.+.+++ +...+.|++|.-=+- ..|...
T Consensus 20 ~~l~~ri~~~~~~tV~Lqa----f~d~~gdg~~~~~YFpnr~lpvraDlf~rvawql~tr~~v~VyAWMPvlaf~lp~~~ 95 (294)
T PF14883_consen 20 DKLIQRIKDMGINTVYLQA----FADPDGDGNADAVYFPNRHLPVRADLFNRVAWQLRTRAGVKVYAWMPVLAFDLPKVK 95 (294)
T ss_pred HHHHHHHHHcCCCEEEEEe----eeCCCCCCceeeEEcCCCCCchHHHHHHHHHHHHhhhhCCEEEEeeehhhccCCCcc
Confidence 6789999999999999854 44443322221 11235566666 556688998764222 112211
Q ss_pred CCCCCCC---CCCC---ccCCchhHHHHHHHHHHHHHHHhCCCCcee--------EEE---eecCCCCCCCChHHHHHHH
Q 019395 131 NGNEHSA---TRDG---FQEWGDSNVADTVAVIDFLAARYANRPSLA--------AIE---LINEPLAPGVALDTLKSYY 193 (341)
Q Consensus 131 ~~~~~~g---~~~~---~~~w~~~~~~~~~~~~~~la~~y~~~~~v~--------~~e---l~NEP~~~~~~~~~~~~~~ 193 (341)
....... ...+ -..|.+++.+...++-+.|+.. ..-..|+ =+| +.++|.. ......+..+.
T Consensus 96 ~~~~~~~~~~~~~~y~RLSPf~p~~r~~I~~IYeDLA~y-~~fdGILFhDDa~L~D~E~~~~~~~~~~-~~Kt~~Li~ft 173 (294)
T PF14883_consen 96 RADEVRTDRPDPDGYRRLSPFDPEARQIIKEIYEDLARY-SKFDGILFHDDAVLSDFEIAAIRQNPAD-RQKTRALIDFT 173 (294)
T ss_pred hhhhccccCCCCCCceecCCCCHHHHHHHHHHHHHHHhh-CCCCeEEEcCCccccchhhhhhccChhh-HHHHHHHHHHH
Confidence 0000000 0111 1224467777777788888753 2222222 122 1122211 11234678899
Q ss_pred HHHHHHHHhcCCC
Q 019395 194 KAGYDAVRKYTST 206 (341)
Q Consensus 194 ~~~~~aIR~~~p~ 206 (341)
.++..++|...|+
T Consensus 174 ~eL~~~v~~~rp~ 186 (294)
T PF14883_consen 174 MELAAAVRRYRPD 186 (294)
T ss_pred HHHHHHHHHhCcc
Confidence 9999999999875
No 301
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=35.35 E-value=3.6e+02 Score=24.84 Aligned_cols=59 Identities=14% Similarity=0.102 Sum_probs=35.8
Q ss_pred HHHHHHHHHCCC--CEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCC
Q 019395 65 DEDFKFLSSNGI--NAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA 126 (341)
Q Consensus 65 e~d~~~i~~~G~--N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~ 126 (341)
++-++.+++.+| .+|=|.+.|. +....-.+++..+....++|+.+++.|++|++-+|-.
T Consensus 27 ~~~~~~~~~~~iP~d~i~lD~~~~---~~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~ 87 (317)
T cd06600 27 VEVVDIMQKEGFPYDVVFLDIHYM---DSYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPG 87 (317)
T ss_pred HHHHHHHHHcCCCcceEEEChhhh---CCCCceeechhcCCCHHHHHHHHHHCCCEEEEEeecc
Confidence 344555566664 3343433332 2222224455566778899999999999999877643
No 302
>PLN02808 alpha-galactosidase
Probab=35.20 E-value=4.1e+02 Score=25.45 Aligned_cols=123 Identities=11% Similarity=0.109 Sum_probs=63.2
Q ss_pred HHHCCCCEEEcCcccccccCCCCCC-CcccchH-HHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCCccCCchh
Q 019395 71 LSSNGINAVRIPVGWWIANDPTPPK-PFVGGSS-KVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDS 148 (341)
Q Consensus 71 i~~~G~N~VRlpi~~~~~~~~~~~~-~~~~~~l-~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~~w~~~ 148 (341)
++++|++.|=|--.|+.......+. ..++..+ .-+..+.+.++++||+ +.++..+|... ++. .. +-
T Consensus 63 l~~~Gy~yv~iDd~W~~~~rd~~G~~~~d~~rFP~G~~~lad~iH~~Glk--fGiy~~~G~~t----C~~--~~----pG 130 (386)
T PLN02808 63 LAALGYKYINLDDCWAELKRDSQGNLVPKASTFPSGIKALADYVHSKGLK--LGIYSDAGTLT----CSK--TM----PG 130 (386)
T ss_pred hHHhCCEEEEEcCCcCCCCcCCCCCEeeChhhcCccHHHHHHHHHHCCCc--eEEEecCCccc----cCC--CC----Cc
Confidence 4778999999988886432111111 1111222 2378888999999998 44455554311 110 00 12
Q ss_pred HHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCceEEEe-CCCC
Q 019395 149 NVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMS-NRLG 216 (341)
Q Consensus 149 ~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~v~~~-~~~~ 216 (341)
...+...-.+.+|+- +..-| =+|-.|.|.. ....-|..+.++|++.+ ++|+++ ..|+
T Consensus 131 s~~~e~~DA~~fA~W--GvDyl-K~D~C~~~~~------~~~~~y~~m~~AL~~tG--Rpi~~slc~wg 188 (386)
T PLN02808 131 SLGHEEQDAKTFASW--GIDYL-KYDNCENTGT------SPQERYPKMSKALLNSG--RPIFFSLCEWG 188 (386)
T ss_pred chHHHHHHHHHHHHh--CCCEE-eecCcCCCCc------cHHHHHHHHHHHHHHhC--CCeEEEecCCC
Confidence 233333334444431 11222 2444444431 12345778888888774 466666 4454
No 303
>PF02937 COX6C: Cytochrome c oxidase subunit VIc; InterPro: IPR004204 Cytochrome c oxidase, a 13 subunit complex, 1.9.3.1 from EC is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit VIc.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3AG4_I 2DYS_V 3ASO_I 2EIK_V 2EIM_I 1OCC_V 1V54_V 1OCO_V 3ASN_V 2EIL_I ....
Probab=35.16 E-value=41 Score=23.87 Aligned_cols=24 Identities=25% Similarity=0.498 Sum_probs=18.5
Q ss_pred HHHHHHHhhccCHHHHHHHHHCCC
Q 019395 53 QVLQDHWDSYITDEDFKFLSSNGI 76 (341)
Q Consensus 53 ~~~~~~~~~~~~e~d~~~i~~~G~ 76 (341)
...+++|.+|=..+||+.|++.|+
T Consensus 45 k~YadFYknYD~~k~fe~M~~~G~ 68 (73)
T PF02937_consen 45 KAYADFYKNYDPMKDFEEMRKAGI 68 (73)
T ss_dssp HHHHHHHHT--HHHHHHHHHHTT-
T ss_pred HHHHHHHHccChHHHHHHHHhcCC
Confidence 457789999888999999999995
No 304
>PRK08187 pyruvate kinase; Validated
Probab=34.92 E-value=93 Score=30.81 Aligned_cols=52 Identities=15% Similarity=0.166 Sum_probs=33.8
Q ss_pred CHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHH-H--HcCCeEEEecCCC
Q 019395 64 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWA-E--KYGVKVIVDLHAA 126 (341)
Q Consensus 64 ~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a-~--~~gi~vildlh~~ 126 (341)
+++-++.|-+.|+|.+||.+++- . .+.+..+-+.|..+ + .+.+.|++|+-+.
T Consensus 148 ~~e~i~~Li~aGmdvaRiN~SHg---------~--~e~~~~~i~~vR~a~~~~g~~i~Il~DL~GP 202 (493)
T PRK08187 148 DPDFVLRLAERGMDCARINCAHD---------D--PAAWQAMIGHLRQAERATGRRCKILMDLAGP 202 (493)
T ss_pred CHHHHHHHHHCCCCEEEEECCCC---------C--HHHHHHHHHHHHHHHHHcCCCeEEEEeCCCC
Confidence 46789999999999999988651 1 11233333333333 2 3467899998765
No 305
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=34.87 E-value=23 Score=30.72 Aligned_cols=53 Identities=17% Similarity=0.182 Sum_probs=38.9
Q ss_pred CCcccCCcccccccccCCcchhhhhhhhcCcchHHHHHHHHHhhccCHHHHHH
Q 019395 18 SSWDDSDPSVFKLNIVSTLRGEYQITNGFGPDKAPQVLQDHWDSYITDEDFKF 70 (341)
Q Consensus 18 ~~~~~~~p~~f~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~e~d~~~ 70 (341)
+++++..|.+|..-..+........+-+.|...+...|+++|+.-+++++...
T Consensus 135 ~G~D~~gp~Ly~~D~~Gs~~~~~~~a~G~g~~~a~~~Lek~~~~dms~eeai~ 187 (212)
T cd03751 135 GGYDSDGPQLYMIEPSGVSYGYFGCAIGKGKQAAKTELEKLKFSELTCREAVK 187 (212)
T ss_pred EEEeCCcCEEEEECCCCCEEeeEEEEECCCCHHHHHHHHHhccCCCCHHHHHH
Confidence 66666679999865544444445566788888899999999988888777543
No 306
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=34.53 E-value=1.5e+02 Score=28.06 Aligned_cols=58 Identities=24% Similarity=0.328 Sum_probs=40.7
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCC
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA 126 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~ 126 (341)
.+..+.+++.|++.+|=.. | -+.+.+..|..-.++.+..+-+.|++.||.++-+.|..
T Consensus 135 ~~~A~~lk~~g~~~~r~~~-~---kpRtsp~~f~g~~~e~l~~L~~~~~~~Gl~~~t~v~d~ 192 (360)
T PRK12595 135 EAVAKALKAKGLKLLRGGA-F---KPRTSPYDFQGLGVEGLKILKQVADEYGLAVISEIVNP 192 (360)
T ss_pred HHHHHHHHHcCCcEEEccc-c---CCCCCCccccCCCHHHHHHHHHHHHHcCCCEEEeeCCH
Confidence 4556678889999999533 1 12222223333356888888899999999999999865
No 307
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=34.50 E-value=1.1e+02 Score=27.55 Aligned_cols=49 Identities=18% Similarity=0.285 Sum_probs=34.6
Q ss_pred CHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCC
Q 019395 64 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA 126 (341)
Q Consensus 64 ~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~ 126 (341)
.+-.+..-+..|.++|=|-+. .. .-+.|.++++.|++.||.+++.+|..
T Consensus 120 d~~QI~eA~~~GADaVLLI~~---~L-----------~~~~l~~l~~~a~~lGle~lVEVh~~ 168 (254)
T PF00218_consen 120 DPYQIYEARAAGADAVLLIAA---IL-----------SDDQLEELLELAHSLGLEALVEVHNE 168 (254)
T ss_dssp SHHHHHHHHHTT-SEEEEEGG---GS-----------GHHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CHHHHHHHHHcCCCEeehhHH---hC-----------CHHHHHHHHHHHHHcCCCeEEEECCH
Confidence 566666777778887776442 11 12558899999999999999999974
No 308
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=34.39 E-value=3.7e+02 Score=24.67 Aligned_cols=96 Identities=16% Similarity=0.164 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHc-CCeEEEecCCCCCCCCCCCCCCCCCCccCCc-hhHHHHHHHHHHHHHHHhCCCCceeEEEeecC-CC
Q 019395 104 VLDNAFDWAEKY-GVKVIVDLHAAPGSQNGNEHSATRDGFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINE-PL 180 (341)
Q Consensus 104 ~ld~~i~~a~~~-gi~vildlh~~~g~~~~~~~~g~~~~~~~w~-~~~~~~~~~~~~~la~~y~~~~~v~~~el~NE-P~ 180 (341)
.+.++....+++ +++|++.+.+...+ ..+. ..-. +...+.+++-+..++++|. +-|++|-=| |.
T Consensus 53 ~~~~~~~l~~~~~~~kvl~svgg~~~s-~~f~--------~~~~~~~~r~~fi~~i~~~~~~~~----~DGidiDwE~~~ 119 (334)
T smart00636 53 NFGQLKALKKKNPGLKVLLSIGGWTES-DNFS--------SMLSDPASRKKFIDSIVSFLKKYG----FDGIDIDWEYPG 119 (334)
T ss_pred hHHHHHHHHHhCCCCEEEEEEeCCCCC-cchh--------HHHCCHHHHHHHHHHHHHHHHHcC----CCeEEECCcCCC
Confidence 455555655564 99999988654221 0000 0011 3566777777777777773 334444333 33
Q ss_pred CCCCChHHHHHHHHHHHHHHHhc---CCCceEEEe
Q 019395 181 APGVALDTLKSYYKAGYDAVRKY---TSTAYVIMS 212 (341)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~aIR~~---~p~~~v~~~ 212 (341)
..+...+.+..+++++-.++++. .++..|.+.
T Consensus 120 ~~~~d~~~~~~ll~~lr~~l~~~~~~~~~~~lsi~ 154 (334)
T smart00636 120 ARGDDRENYTALLKELREALDKEGAEGKGYLLTIA 154 (334)
T ss_pred CCccHHHHHHHHHHHHHHHHHHhcccCCceEEEEE
Confidence 21133456777777777777654 345555544
No 309
>PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function.
Probab=34.19 E-value=1e+02 Score=25.93 Aligned_cols=49 Identities=20% Similarity=0.354 Sum_probs=36.3
Q ss_pred HHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEec
Q 019395 67 DFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDL 123 (341)
Q Consensus 67 d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildl 123 (341)
-++.|++.|++..=+ +.+|+- .|+ +++..+++.+.+.|++.||.||.+-
T Consensus 14 ~~~~L~~~g~~vt~~------fyNPNI-hP~-~Ey~~R~~~~~~~~~~~~i~~i~~~ 62 (176)
T PF02677_consen 14 PLERLREEGFDVTGY------FYNPNI-HPY-EEYERRLEELKRFAEKLGIPLIEGD 62 (176)
T ss_pred HHHHHHHCCCCeEEE------EeCCCC-CcH-HHHHHHHHHHHHHHHHcCCCEEecC
Confidence 467888889885543 334432 233 5689999999999999999999853
No 310
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=34.11 E-value=3.4e+02 Score=24.15 Aligned_cols=62 Identities=15% Similarity=0.229 Sum_probs=40.9
Q ss_pred CHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCC
Q 019395 64 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAP 127 (341)
Q Consensus 64 ~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~ 127 (341)
-++-+....++|+.+|-|. +|...-++... .-.+...+-+..++++|.++.+..-+.+...|
T Consensus 98 M~KaI~LA~dLGIRtIQLA-GYDVYYE~~d~-eT~~rFi~g~~~a~~lA~~aqV~lAvEiMDtp 159 (287)
T COG3623 98 MEKAIQLAQDLGIRTIQLA-GYDVYYEEADE-ETRQRFIEGLKWAVELAARAQVMLAVEIMDTP 159 (287)
T ss_pred HHHHHHHHHHhCceeEeec-cceeeeccCCH-HHHHHHHHHHHHHHHHHHhhccEEEeeecccH
Confidence 3677788889999999983 34333333322 11233567788899999999977666655443
No 311
>TIGR01114 mtrH N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit H. coenzyme M methyltransferase subunit H in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=33.89 E-value=1.9e+02 Score=26.65 Aligned_cols=69 Identities=23% Similarity=0.480 Sum_probs=48.8
Q ss_pred HHHHHHHhhccCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHH--------HHHHHHHcCCe-EEEec
Q 019395 53 QVLQDHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDN--------AFDWAEKYGVK-VIVDL 123 (341)
Q Consensus 53 ~~~~~~~~~~~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~--------~i~~a~~~gi~-vildl 123 (341)
+.+-+.-+.-++++.++.|++.++++.=+ ..++|.. +-.++.++.|.+ ++..|.+-||. ++||.
T Consensus 124 R~IYNSIn~s~~~eEieaL~esdi~aaIi-----LaFnp~d--psv~gr~~~l~~gg~~~~~gll~~ae~~GI~~pliD~ 196 (314)
T TIGR01114 124 RAIYNSINASIEEEEIQVLKESDLSAAIV-----LAFNPMD--PTVEGKIDILEVGGGTSDKGMLEIAEECGIKYPLIDV 196 (314)
T ss_pred HHHHhhcCccCCHHHHHHHHhcCCCeEEE-----EecCCCC--CCHHHHHHHHHhcCccccccHHHHHHHcCCCceeecc
Confidence 33444445567899999999999999876 3344432 222455666643 78999999995 88999
Q ss_pred CCCCC
Q 019395 124 HAAPG 128 (341)
Q Consensus 124 h~~~g 128 (341)
-..|-
T Consensus 197 avtpl 201 (314)
T TIGR01114 197 AVTPL 201 (314)
T ss_pred cccCC
Confidence 88864
No 312
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=33.85 E-value=1.4e+02 Score=27.61 Aligned_cols=56 Identities=14% Similarity=0.164 Sum_probs=37.6
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcc-cchHHHHHHHHHHHHHcCC-eEEEec
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV-GGSSKVLDNAFDWAEKYGV-KVIVDL 123 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~-~~~l~~ld~~i~~a~~~gi-~vildl 123 (341)
.+.++.|+++|++.|.|++.- .++.....+. .+.++.+-+.|+.+.+.|+ .|.|..
T Consensus 104 ~~~~~~L~~aGl~~v~ISlDs---~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~ 161 (329)
T PRK13361 104 ARFAAELADAGLKRLNISLDT---LRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLNA 161 (329)
T ss_pred HHHHHHHHHcCCCeEEEEecc---CCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEE
Confidence 356788999999999988742 1221111111 2357888889999999998 666653
No 313
>PLN02449 ferrochelatase
Probab=33.79 E-value=3.3e+02 Score=26.96 Aligned_cols=148 Identities=17% Similarity=0.228 Sum_probs=86.4
Q ss_pred HHhhccCHHHHHHHHHCCCCEEEc-Ccc--cccc------------c--CCC---C------CCCcccchHHHHHHHHHH
Q 019395 58 HWDSYITDEDFKFLSSNGINAVRI-PVG--WWIA------------N--DPT---P------PKPFVGGSSKVLDNAFDW 111 (341)
Q Consensus 58 ~~~~~~~e~d~~~i~~~G~N~VRl-pi~--~~~~------------~--~~~---~------~~~~~~~~l~~ld~~i~~ 111 (341)
+|+.+ +++-++.|++.|++.|-+ |+. |... . .+. . ...-.+++++.+-+.|..
T Consensus 188 Y~~P~-iedal~~l~~~G~~~iVvLPLYPQyS~sTtgSs~~~l~~~~~~~~~~~~~~~~~I~~~~~~p~yI~A~a~~I~~ 266 (485)
T PLN02449 188 YWHPF-TEEAIDQIKADGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTVIPSWYQREGYVKAMADLIKK 266 (485)
T ss_pred cCCCC-HHHHHHHHHhcCCCeEEEEECCcccccccHHHHHHHHHHHHhhcccccCCeeEEeccccCChHHHHHHHHHHHH
Confidence 56555 488999999999998766 331 1000 0 000 0 000123455555555543
Q ss_pred HH-Hc----CCeEEEecCCCCCCCCCCCCCCCCCCccCCchhHHHHHHHHHHHHHHHhCC----CCceeEEEeecCCCCC
Q 019395 112 AE-KY----GVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYAN----RPSLAAIELINEPLAP 182 (341)
Q Consensus 112 a~-~~----gi~vildlh~~~g~~~~~~~~g~~~~~~~w~~~~~~~~~~~~~~la~~y~~----~~~v~~~el~NEP~~~ 182 (341)
+. +. +..+++..|+.|-..-. ..| +.++++..+..+.|+++.+. .+..++|+----|
T Consensus 267 ~l~~~~~~~~~~LlFSAHGlP~~~v~--~~G---------DpY~~q~~~ta~lI~~~L~~~~~~~~~~layQSR~Gp--- 332 (485)
T PLN02449 267 ELAKFSDPEEVHIFFSAHGVPVSYVE--EAG---------DPYKAQMEECVDLIMEELKARGILNRHTLAYQSRVGP--- 332 (485)
T ss_pred HHHhccCcCCcEEEEecCCChhhhhh--hcC---------CChHHHHHHHHHHHHHHhCCCCCCCCeEEEEeCCCCC---
Confidence 32 22 37799999999854210 001 13567777888888888754 3455666652222
Q ss_pred CCChHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCChhhh
Q 019395 183 GVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRLGPADHKEL 223 (341)
Q Consensus 183 ~~~~~~~~~~~~~~~~aIR~~~p~~~v~~~~~~~~~~~~~~ 223 (341)
.+.+..+.++.+..+.+.+-+.++++..+|-+-..+.+
T Consensus 333 ---~eWL~P~t~d~L~~L~~~Gvk~VlvvPigFvSDhiETL 370 (485)
T PLN02449 333 ---VEWLKPYTDETIVELGKKGVKSLLAVPISFVSEHIETL 370 (485)
T ss_pred ---CCCCCCCHHHHHHHHHHcCCCeEEEECCcccccchHHH
Confidence 23556677778877877787788888877765444443
No 314
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=33.68 E-value=2.9e+02 Score=25.75 Aligned_cols=131 Identities=10% Similarity=-0.051 Sum_probs=66.4
Q ss_pred cCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCccc--chHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCC
Q 019395 63 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVG--GSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRD 140 (341)
Q Consensus 63 ~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~--~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~ 140 (341)
.+++.++.||++|++.+=. .+.. ..++.-...+.. ...+..-+.++.|++.||.|--.+--..
T Consensus 139 ~~~e~l~~LkeAGl~~i~~-~~~E-~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s~~i~G~------------- 203 (343)
T TIGR03551 139 SVEEALKRLKEAGLDSMPG-TAAE-ILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTATIMYGH------------- 203 (343)
T ss_pred CHHHHHHHHHHhCcccccC-cchh-hcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccceEEEec-------------
Confidence 3688999999999997631 1111 111100000111 1345556899999999997643321110
Q ss_pred CccCCchhHHHHHHHHHHHHHHHhCCCCceeEEEeec--CCCCCCCC------hHHHHHHHHHHHHHHHhcCCCceEEEe
Q 019395 141 GFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELIN--EPLAPGVA------LDTLKSYYKAGYDAVRKYTSTAYVIMS 212 (341)
Q Consensus 141 ~~~~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~N--EP~~~~~~------~~~~~~~~~~~~~aIR~~~p~~~v~~~ 212 (341)
+ ...+.....+.+++.+-..+.+... +-++| -|.. +.. ...=..-+-+++...|=.-|+..+-+.
T Consensus 204 --~-Et~ed~~~~l~~lr~l~~~~~~~~~---~iP~~f~~~gT-~l~~~~~~~~~~~~~~~lr~iAv~Rl~lp~~~~~i~ 276 (343)
T TIGR03551 204 --V-ETPEHWVDHLLILREIQEETGGFTE---FVPLPFVHYNA-PLYLKGMARPGPTGREDLKVHAIARILLHGLIDNIQ 276 (343)
T ss_pred --C-CCHHHHHHHHHHHHHhhHHhCCeeE---EEeccccCCCC-ccccccCCCCCCCHHHHHHHHHHHHHhCCCcccCee
Confidence 0 0113334455566666666554332 33444 1221 110 000123445667777888888765566
Q ss_pred CCC
Q 019395 213 NRL 215 (341)
Q Consensus 213 ~~~ 215 (341)
.+|
T Consensus 277 a~~ 279 (343)
T TIGR03551 277 ASW 279 (343)
T ss_pred ccc
Confidence 555
No 315
>PRK09206 pyruvate kinase; Provisional
Probab=33.64 E-value=60 Score=31.90 Aligned_cols=53 Identities=13% Similarity=0.229 Sum_probs=33.3
Q ss_pred CHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHH--HcCCeEEEecCCC
Q 019395 64 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAE--KYGVKVIVDLHAA 126 (341)
Q Consensus 64 ~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~--~~gi~vildlh~~ 126 (341)
+++-++.|-..|+|.+||.+++- .+ +...+.++.+=+..+ .+.+.+++|+-+.
T Consensus 16 ~~e~l~~li~aGm~v~RlN~sHg---------~~-~~~~~~i~~vr~~~~~~~~~i~Il~Dl~GP 70 (470)
T PRK09206 16 SEEMLTKLLDAGMNVMRLNFSHG---------DY-AEHGQRIKNLRNVMSKTGKKAAILLDTKGP 70 (470)
T ss_pred CHHHHHHHHHcCCCEEEEECCCC---------CH-HHHHHHHHHHHHHHHHhCCCeEEEeeCCCC
Confidence 37889999999999999988641 11 112233333322333 3567788998654
No 316
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=33.33 E-value=3.4e+02 Score=23.91 Aligned_cols=127 Identities=15% Similarity=0.153 Sum_probs=73.4
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCCccC
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQE 144 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~~ 144 (341)
++-++.+++.|.+.|=+|-- ++ +..+.++++++.|+++||.+++-+|-..
T Consensus 91 ~~~i~~~~~~Gadgvii~dl-----------p~--e~~~~~~~~~~~~~~~Gl~~~~~v~p~T----------------- 140 (244)
T PRK13125 91 DNFLNMARDVGADGVLFPDL-----------LI--DYPDDLEKYVEIIKNKGLKPVFFTSPKF----------------- 140 (244)
T ss_pred HHHHHHHHHcCCCEEEECCC-----------CC--CcHHHHHHHHHHHHHcCCCEEEEECCCC-----------------
Confidence 34466778888888777421 11 1245688999999999999999887431
Q ss_pred CchhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCChhhhh
Q 019395 145 WGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRLGPADHKELL 224 (341)
Q Consensus 145 w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~v~~~~~~~~~~~~~~~ 224 (341)
..+ .++.+++ ..+.++-. .-+|.... .+..-..+.++.+|+..++.+|.++.+-. +.....
T Consensus 141 ----~~e----~l~~~~~---~~~~~l~m--sv~~~~g~----~~~~~~~~~i~~lr~~~~~~~i~v~gGI~--~~e~i~ 201 (244)
T PRK13125 141 ----PDL----LIHRLSK---LSPLFIYY--GLRPATGV----PLPVSVERNIKRVRNLVGNKYLVVGFGLD--SPEDAR 201 (244)
T ss_pred ----CHH----HHHHHHH---hCCCEEEE--EeCCCCCC----CchHHHHHHHHHHHHhcCCCCEEEeCCcC--CHHHHH
Confidence 112 2233332 23344422 23454321 35566666777888877766787775442 333433
Q ss_pred hc-cCCCCcEEEEeeec
Q 019395 225 SF-ASGLSRVVIDVHYY 240 (341)
Q Consensus 225 ~~-~~~~~~~v~~~H~Y 240 (341)
.. ..+.+-+|+.....
T Consensus 202 ~~~~~gaD~vvvGSai~ 218 (244)
T PRK13125 202 DALSAGADGVVVGTAFI 218 (244)
T ss_pred HHHHcCCCEEEECHHHH
Confidence 32 13445667766554
No 317
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=33.20 E-value=2.2e+02 Score=28.48 Aligned_cols=60 Identities=15% Similarity=0.141 Sum_probs=39.7
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecC
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 124 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh 124 (341)
+..++.+.+.|...|.+.++=+...-...-..-.++.++.+.+.|+.|+++|+.|..+.-
T Consensus 84 d~~~ea~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e 143 (526)
T TIGR00977 84 DKMLQALIKAETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDAE 143 (526)
T ss_pred HHHHHHHhcCCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEee
Confidence 456888888899888886543211100000111255788999999999999999987553
No 318
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=33.14 E-value=30 Score=30.42 Aligned_cols=53 Identities=15% Similarity=0.216 Sum_probs=40.9
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEe
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVD 122 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vild 122 (341)
-.+.+...++|.+.|=+-+.|..... +. ....++.+.++++.|+++||.|||-
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~----~~-~~~~~~~i~~v~~~~~~~gl~vIlE 131 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGS----GN-EDEVIEEIAAVVEECHKYGLKVILE 131 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHT----TH-HHHHHHHHHHHHHHHHTSEEEEEEE
T ss_pred HHHHHHHHHcCCceeeeecccccccc----cc-HHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 56778889999999999887633221 11 2457899999999999999999998
No 319
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=33.06 E-value=1.1e+02 Score=27.21 Aligned_cols=24 Identities=21% Similarity=0.477 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHcCCeEEEecCCC
Q 019395 103 KVLDNAFDWAEKYGVKVIVDLHAA 126 (341)
Q Consensus 103 ~~ld~~i~~a~~~gi~vildlh~~ 126 (341)
+.+.++++.|.+.||.++|..|..
T Consensus 138 ~~l~~l~~~a~~lGle~LVEVh~~ 161 (247)
T PRK13957 138 SQIKSFLKHASSLGMDVLVEVHTE 161 (247)
T ss_pred HHHHHHHHHHHHcCCceEEEECCH
Confidence 468899999999999999999974
No 320
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=32.76 E-value=4.3e+02 Score=24.94 Aligned_cols=130 Identities=17% Similarity=0.197 Sum_probs=68.4
Q ss_pred cCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCc----ccchHHHHHHHHHHHHHcCCe-EEEecC-CCCCCCCCCCCC
Q 019395 63 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF----VGGSSKVLDNAFDWAEKYGVK-VIVDLH-AAPGSQNGNEHS 136 (341)
Q Consensus 63 ~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~----~~~~l~~ld~~i~~a~~~gi~-vildlh-~~~g~~~~~~~~ 136 (341)
+++++++.|+++|++.+-+.+ ... ++.-...+ ....++..-+.++.|++.|+. |-+++- +.+
T Consensus 160 lt~e~~~~Lk~aGv~r~~i~l--ET~-~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~Gl~--------- 227 (366)
T TIGR02351 160 LNEEEYKKLVEAGLDGVTVYQ--ETY-NEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMRKIGIGALLGLD--------- 227 (366)
T ss_pred CCHHHHHHHHHcCCCEEEEEe--ecC-CHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCCeeceeEEEeCc---------
Confidence 689999999999999665543 111 11000000 012456666789999999986 444322 111
Q ss_pred CCCCCccCCchhHHHHHHHHHHHHHHHhCCCC-cee--EEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCceEEEeC
Q 019395 137 ATRDGFQEWGDSNVADTVAVIDFLAARYANRP-SLA--AIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSN 213 (341)
Q Consensus 137 g~~~~~~~w~~~~~~~~~~~~~~la~~y~~~~-~v~--~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~v~~~~ 213 (341)
.|. ...-..+..++.|-.+|...+ .|- -+-....|..+.. .-=..-+.+++.++|=..|+.-|.+.+
T Consensus 228 -------e~~-~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g~~~~~~--~l~~~~~~~~i~~~R~~~P~~~i~~s~ 297 (366)
T TIGR02351 228 -------DWR-TDAFFTAYHLRYLQKKYWKTEISISVPRLRPCTNGLKPKV--IVTDRELVQIICAYRLFDPFVEISLST 297 (366)
T ss_pred -------hhH-HHHHHHHHHHHHHHHHcCCCCccccccccccCCCCCCCCC--cCCHHHHHHHHHHHHHhCcccccEEec
Confidence 121 111123345566766676532 221 1112211221110 011233456778889999999898886
Q ss_pred C
Q 019395 214 R 214 (341)
Q Consensus 214 ~ 214 (341)
+
T Consensus 298 g 298 (366)
T TIGR02351 298 R 298 (366)
T ss_pred C
Confidence 4
No 321
>PF04898 Glu_syn_central: Glutamate synthase central domain; InterPro: IPR006982 Glutamate synthase (GltS)1 is a key enzyme in the early stages of the assimilation of ammonia in bacteria, yeasts, and plants. In bacteria, L-glutamate is involved in osmoregulation, is the precursor for other amino acids, and can be the precursor for haem biosynthesis. In plants, GltS is especially essential in the reassimilation of ammonia released by photorespiration. On the basis of the amino acid sequence and the nature of the electron donor, three different classes of GltS can de defined as follows: 1) ferredoxin-dependent GltS (Fd-GltS), 2) NADPH-dependent GltS (NADPH-GltS), and 3) NADH-dependent GltS (properties of the three classes have been reviewed extensively []). The enzyme is a complex iron-sulphur flavoprotein catalysing the reductive transfer of the amido nitrogen from L-glutamine to 2-oxoglutarate to form two molecules of L-glutamate via intramolecular channelling of ammonia from the amidotransferase domain to the FMN-binding domain. Reaction of amidotransferase domain: L-glutamine + H2O = L-glutamate + NH3 Reactions of FMN-binding domain: 2-oxoglutarate + NH3 = 2-iminoglutarate + H2O 2e + FMNox = FMNred 2-iminoglutarate + FMNred = L-glutamate + FMNox The central domain of glutamate synthase connects the N-terminal amidotransferase domain with the FMN-binding domain and has an alpha/beta overall topology [].; GO: 0015930 glutamate synthase activity, 0006807 nitrogen compound metabolic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=32.70 E-value=1.2e+02 Score=27.81 Aligned_cols=57 Identities=12% Similarity=0.164 Sum_probs=40.6
Q ss_pred hccCHHHHHHHHH---CCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEE
Q 019395 61 SYITDEDFKFLSS---NGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIV 121 (341)
Q Consensus 61 ~~~~e~d~~~i~~---~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vil 121 (341)
..++..+++.|++ .++.+.+|+..|.... +..-.+..+++|-+-+..|.+.|..+||
T Consensus 101 PiL~~~~l~~l~~~~~~~~~~~~l~~~f~~~~----~~~~L~~aL~~l~~ea~~Av~~G~~ilI 160 (287)
T PF04898_consen 101 PILSNGQLEKLRSLDDPGFKAATLDATFPAEG----GDEGLEEALDRLCEEAEAAVREGANILI 160 (287)
T ss_dssp SB--HHHHHHHHHH--CCCCEEEEESEEESTT----STTCHHHHHHHHHHHHHHHHHCT-SEEE
T ss_pred CEECHHHHHHHHHhhccCCCccEEEEEEECCc----ChhHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 4468999999998 5999999998764321 1223456788888888888899998776
No 322
>PLN02389 biotin synthase
Probab=32.53 E-value=4.5e+02 Score=25.07 Aligned_cols=129 Identities=15% Similarity=0.072 Sum_probs=67.9
Q ss_pred ccCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCc-ccchHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCC
Q 019395 62 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF-VGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRD 140 (341)
Q Consensus 62 ~~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~-~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~ 140 (341)
..+++.++.|+++|++.+-+.+. . .+.-...+ ....++..-+.++.|++.||.|...+ .-|. |
T Consensus 175 ~l~~E~l~~LkeAGld~~~~~Le--T--s~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg~--IiGl-------g--- 238 (379)
T PLN02389 175 MLEKEQAAQLKEAGLTAYNHNLD--T--SREYYPNVITTRSYDDRLETLEAVREAGISVCSGG--IIGL-------G--- 238 (379)
T ss_pred CCCHHHHHHHHHcCCCEEEeeec--C--ChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeEEE--EECC-------C---
Confidence 36799999999999998765332 1 01000111 12367788889999999999874432 2111 1
Q ss_pred CccCCchhHHHHHHHHHHHHHHHhCCCCceeEEEeec-CCCCC--CCChHHHHHHHHHHHHHHHhcCCCceEEEeCCC
Q 019395 141 GFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELIN-EPLAP--GVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRL 215 (341)
Q Consensus 141 ~~~~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~N-EP~~~--~~~~~~~~~~~~~~~~aIR~~~p~~~v~~~~~~ 215 (341)
+..+..++.+..+.+ ++.++.-+.+..++ .|..+ ..+..... -+-+++...|=..|+..+-+..+|
T Consensus 239 -------Et~edrv~~l~~Lr~-L~~~~~~v~l~~l~P~~GTpL~~~~~~s~~-e~lr~iAi~Rl~lP~~~i~i~~gr 307 (379)
T PLN02389 239 -------EAEEDRVGLLHTLAT-LPEHPESVPINALVAVKGTPLEDQKPVEIW-EMVRMIATARIVMPKAMVRLSAGR 307 (379)
T ss_pred -------CCHHHHHHHHHHHHh-cccCCcEEecccceecCCCcCCCCCCCCHH-HHHHHHHHHHHHCCCccccccccc
Confidence 223344444444433 33223322222221 11110 01111111 224567777888999888877665
No 323
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=32.33 E-value=71 Score=27.42 Aligned_cols=57 Identities=14% Similarity=0.218 Sum_probs=38.9
Q ss_pred HHHHhhccCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccc--hHHHHHHHHHHHHHcC
Q 019395 56 QDHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGG--SSKVLDNAFDWAEKYG 116 (341)
Q Consensus 56 ~~~~~~~~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~--~l~~ld~~i~~a~~~g 116 (341)
.++.++-+...-.+.+.+.|+-++|+.+. ..... .++++.+ -++....+++|++.+.
T Consensus 41 gGtm~nkvv~~la~~l~~~G~atlRfNfR---gVG~S-~G~fD~GiGE~~Da~aaldW~~~~h 99 (210)
T COG2945 41 GGTMNNKVVQTLARALVKRGFATLRFNFR---GVGRS-QGEFDNGIGELEDAAAALDWLQARH 99 (210)
T ss_pred cCccCCHHHHHHHHHHHhCCceEEeeccc---ccccc-cCcccCCcchHHHHHHHHHHHHhhC
Confidence 34555556677888899999999998652 22222 2355543 4677778999998875
No 324
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=32.16 E-value=1.6e+02 Score=28.69 Aligned_cols=60 Identities=20% Similarity=0.205 Sum_probs=40.6
Q ss_pred ccCHHHHHHHHHCCCCEEEcCccccc-ccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEe
Q 019395 62 YITDEDFKFLSSNGINAVRIPVGWWI-ANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVD 122 (341)
Q Consensus 62 ~~~e~d~~~i~~~G~N~VRlpi~~~~-~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vild 122 (341)
-.|.++.+.+.++|++.|++.++--. ...... ...-...+..+.++.+.|+++++.||.|
T Consensus 273 v~t~~~a~~l~~aGad~i~vg~g~G~~~~t~~~-~~~g~p~~~~i~~~~~~~~~~~vpviad 333 (450)
T TIGR01302 273 VATAEQAKALIDAGADGLRVGIGPGSICTTRIV-AGVGVPQITAVYDVAEYAAQSGIPVIAD 333 (450)
T ss_pred CCCHHHHHHHHHhCCCEEEECCCCCcCCcccee-cCCCccHHHHHHHHHHHHhhcCCeEEEe
Confidence 35899999999999999998764210 001000 0011125677888888899999998886
No 325
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=31.96 E-value=1.3e+02 Score=26.11 Aligned_cols=44 Identities=27% Similarity=0.498 Sum_probs=30.2
Q ss_pred HHHHHHHHcCC----eEEEecCCCCCCCCCCCCCCCCCCccCCchhHHHHHHHHHHHHHHHhCCCCceeEEEee
Q 019395 107 NAFDWAEKYGV----KVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELI 176 (341)
Q Consensus 107 ~~i~~a~~~gi----~vildlh~~~g~~~~~~~~g~~~~~~~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~ 176 (341)
++++...+++| .+||||-..||+ +.+.++++-+....|+++|+.
T Consensus 32 KL~el~~k~~i~~~~~~ViDLGAAPGg--------------------------WsQva~~~~~~~~~ivavDi~ 79 (205)
T COG0293 32 KLLELNEKFKLFKPGMVVVDLGAAPGG--------------------------WSQVAAKKLGAGGKIVAVDIL 79 (205)
T ss_pred HHHHHHHhcCeecCCCEEEEcCCCCCc--------------------------HHHHHHHHhCCCCcEEEEECc
Confidence 35566667666 699999999975 223345556666668888874
No 326
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=31.64 E-value=1.3e+02 Score=27.57 Aligned_cols=59 Identities=25% Similarity=0.369 Sum_probs=42.3
Q ss_pred cCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCc--ccchHHHHHHHHHHHHHcCCeEEEecC
Q 019395 63 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF--VGGSSKVLDNAFDWAEKYGVKVIVDLH 124 (341)
Q Consensus 63 ~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~--~~~~l~~ld~~i~~a~~~gi~vildlh 124 (341)
++++.++.+++.|++.|.+++.- .++....+. ..+.++..-+.+..+.+.|+.+.+...
T Consensus 106 ~~~~~~~~l~~~g~~~v~iSid~---~~~e~hd~~rg~~g~~~~~~~~i~~~~~~g~~~~~~~~ 166 (347)
T COG0535 106 LTEEVLEKLKEAGLDYVSISLDG---LDPETHDPIRGVKGVFKRAVEAIKNLKEAGILVVINTT 166 (347)
T ss_pred CCHHHHHHHHhcCCcEEEEEecC---CChhhhhhhcCCCcHHHHHHHHHHHHHHcCCeeeEEEE
Confidence 67899999999999999998852 122111111 245788999999999999997555433
No 327
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=31.60 E-value=80 Score=27.56 Aligned_cols=54 Identities=19% Similarity=0.086 Sum_probs=37.8
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCC
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA 126 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~ 126 (341)
...++...+.|.+.|=+-+.. ... . ....++.+.++++.|+++|+.+|++.|..
T Consensus 79 ~~~v~~a~~~Ga~~v~~~~~~----~~~---~-~~~~~~~i~~v~~~~~~~g~~~iie~~~~ 132 (235)
T cd00958 79 VASVEDAVRLGADAVGVTVYV----GSE---E-EREMLEELARVAAEAHKYGLPLIAWMYPR 132 (235)
T ss_pred hcCHHHHHHCCCCEEEEEEec----CCc---h-HHHHHHHHHHHHHHHHHcCCCEEEEEecc
Confidence 345777889999977332221 010 1 13468899999999999999999988763
No 328
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=31.54 E-value=2e+02 Score=28.39 Aligned_cols=48 Identities=19% Similarity=0.198 Sum_probs=36.8
Q ss_pred CHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCC
Q 019395 64 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 125 (341)
Q Consensus 64 ~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~ 125 (341)
.+..++..++.|+..||+..+-. .++.+.+.++.++++|+.|...+..
T Consensus 97 v~~fv~~A~~~Gvd~irif~~ln--------------d~~n~~~~i~~ak~~G~~v~~~i~~ 144 (467)
T PRK14041 97 VELFVKKVAEYGLDIIRIFDALN--------------DIRNLEKSIEVAKKHGAHVQGAISY 144 (467)
T ss_pred hHHHHHHHHHCCcCEEEEEEeCC--------------HHHHHHHHHHHHHHCCCEEEEEEEe
Confidence 34458888999999999855320 1567889999999999998877643
No 329
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=31.22 E-value=77 Score=27.11 Aligned_cols=51 Identities=16% Similarity=0.271 Sum_probs=33.2
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEe
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVD 122 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vild 122 (341)
...++.+..+.++.|+|+..+- .. -. ++.....++.+++.|+++|+.||++
T Consensus 159 ~~~~~~l~~l~~~~ikld~~~~---~~---~~-~~~~~~~l~~l~~~~~~~~~~via~ 209 (236)
T PF00563_consen 159 SSSLEYLASLPPDYIKLDGSLV---RD---LS-DEEAQSLLQSLINLAKSLGIKVIAE 209 (236)
T ss_dssp CGCHHHHHHHCGSEEEEEHHGH---TT---TT-SHHHHHHHHHHHHHHHHTT-EEEEE
T ss_pred cchhhhhhhcccccceeecccc---cc---cc-hhhHHHHHHHHHHHhhcccccccee
Confidence 3455556666666666655432 10 11 3456788999999999999999986
No 330
>KOG2530 consensus Members of tubulin/FtsZ family [Cytoskeleton]
Probab=31.00 E-value=2e+02 Score=27.91 Aligned_cols=50 Identities=12% Similarity=0.196 Sum_probs=37.6
Q ss_pred cccchHHHHHHHHHHH-HHcCCeEEEecCCCCCCCCCCCCCCCCCCccCCchhHHHHHHHHHHHHHHHhCCCC
Q 019395 97 FVGGSSKVLDNAFDWA-EKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRP 168 (341)
Q Consensus 97 ~~~~~l~~ld~~i~~a-~~~gi~vildlh~~~g~~~~~~~~g~~~~~~~w~~~~~~~~~~~~~~la~~y~~~~ 168 (341)
|.++..++|...|+.| .=.|+.+++|+|..=|+ -..++++.|...|...+
T Consensus 186 ~~eE~~DrLr~~VEECD~lQGFq~l~Did~GfgG----------------------~as~~le~l~DEys~~~ 236 (483)
T KOG2530|consen 186 YQEEFCDRLRFYVEECDTLQGFQLLSDIDDGFGG----------------------FASKLLEELQDEYSKKA 236 (483)
T ss_pred hhHHHHHHHHHHHHhcccccceEEEEecCCCchh----------------------HHHHHHHHHHHhhcCCc
Confidence 4567789999999999 56899999999964221 33467788888886655
No 331
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=30.67 E-value=2.6e+02 Score=25.94 Aligned_cols=56 Identities=21% Similarity=0.156 Sum_probs=32.5
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcc--cchHHHHHHHHHHHHHcCCeEEEe
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV--GGSSKVLDNAFDWAEKYGVKVIVD 122 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~--~~~l~~ld~~i~~a~~~gi~vild 122 (341)
++.++.|+++|++.+-. .+.....+... ..+. ....+..-++++.|++.||.|...
T Consensus 143 ~e~l~~Lk~aG~~~~~~-~g~E~~~~~~~-~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~ 200 (340)
T TIGR03699 143 REVLERLKEAGLDSIPG-GGAEILSDRVR-KIISPKKISSEEWLEVMETAHKLGLPTTAT 200 (340)
T ss_pred HHHHHHHHHcCCCcCCC-CcccccCHHHH-HhhCCCCCCHHHHHHHHHHHHHcCCCccce
Confidence 88999999999995521 11111100000 0010 113556678999999999986543
No 332
>PRK06354 pyruvate kinase; Provisional
Probab=30.57 E-value=70 Score=32.48 Aligned_cols=53 Identities=19% Similarity=0.288 Sum_probs=33.1
Q ss_pred CHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcC--CeEEEecCCC
Q 019395 64 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYG--VKVIVDLHAA 126 (341)
Q Consensus 64 ~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~g--i~vildlh~~ 126 (341)
+++-++.|-+.|+|.+||.+++- .. +...+.++.+=+..++.| +.+++|+-+.
T Consensus 22 ~~e~l~~li~aG~~v~RlN~sHg---------~~-e~~~~~i~~ir~~~~~~~~~i~i~~Dl~Gp 76 (590)
T PRK06354 22 SPEKLRQLIEAGATTARLNFSHG---------DH-EEHGARIKNIREASKKLGKTVGILQDLQGP 76 (590)
T ss_pred CHHHHHHHHHcCCCEEEEECCCC---------CH-HHHHHHHHHHHHHHHHhCCCEEEEeeCCCC
Confidence 37889999999999999988651 11 112233333333334444 5578888754
No 333
>PF01341 Glyco_hydro_6: Glycosyl hydrolases family 6; InterPro: IPR016288 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The 1,4-beta cellobiohydrolase family plays a central role in the recycling of plant biomass. The biological conversion of cellulose to glucose generally requires three types of hydrolytic enzymes: Endoglucanases, which cut internal beta-1,4-glucosidic bonds; Exocellobiohydrolases that cut the dissaccharide cellobiose from the non-reducing end of the cellulose polymer chain; and Beta-1,4-glucosidases, which hydrolyze the cellobiose and other short cello-oligosaccharides to glucose.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030245 cellulose catabolic process; PDB: 2BOF_X 2BOG_X 1TML_A 3RPT_A 2BOD_X 2BOE_X 1DYS_B 3VOI_A 3VOG_A 3VOJ_A ....
Probab=30.45 E-value=3.1e+02 Score=25.19 Aligned_cols=103 Identities=22% Similarity=0.194 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCC-CCCccCCchhHHHHHHHHHHHHHHH---hCCCCceeEEEee
Q 019395 101 SSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSAT-RDGFQEWGDSNVADTVAVIDFLAAR---YANRPSLAAIELI 176 (341)
Q Consensus 101 ~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~-~~~~~~w~~~~~~~~~~~~~~la~~---y~~~~~v~~~el~ 176 (341)
.-..|+.++..+.+.|-.++|-+...|+. ++++. +.+. .....+.+.+++..|++- |.+.+.|+.
T Consensus 45 ~~~~l~~~~~~a~~~~~~~vlVvY~lP~R----DC~a~~S~Ge---g~~~~~~Yk~wId~ia~~i~~~g~~~~vvI---- 113 (298)
T PF01341_consen 45 VRQYLRAAVAQAAAAGKTPVLVVYNLPNR----DCAAGASAGE---GADSLASYKEWIDPIAAGIKKYGDRRAVVI---- 113 (298)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEEE---TTC----STTSSSTSSS---GGTHHHHHHHHHHHHHHHHHHTTTSEEEEE----
T ss_pred HHHHHHHHHHhhhccCCceEEEEeccCCC----CccccccCCC---CCCchhHHHHHHHHHHHHHHhcCCCceEEE----
Confidence 45778888999998888888878777753 22111 1111 124455666666666654 477776643
Q ss_pred cCCCCCC-----------CChHHHHHHHHHHHHHHHhc--CCCceEEEeCC
Q 019395 177 NEPLAPG-----------VALDTLKSYYKAGYDAVRKY--TSTAYVIMSNR 214 (341)
Q Consensus 177 NEP~~~~-----------~~~~~~~~~~~~~~~aIR~~--~p~~~v~~~~~ 214 (341)
=||..-. ........+.+.+..+|+.. .|+..|.+..+
T Consensus 114 lEPDaL~~lvtn~~~~~C~~~~~~~~r~~~l~yAv~~L~~~~na~vYlDaG 164 (298)
T PF01341_consen 114 LEPDALANLVTNMSTPACGNAAQQAERLELLAYAVDKLSALPNAWVYLDAG 164 (298)
T ss_dssp E-TTCHHHHHH-TTSHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEE--
T ss_pred ECcchhhhhhcccCcccccchhccHHHHHHHHHHHHHHhcCCCeEEEEecc
Confidence 4776411 00111223333333344433 56888998854
No 334
>TIGR00628 ung uracil-DNA glycosylase. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=30.45 E-value=3.7e+02 Score=23.41 Aligned_cols=124 Identities=18% Similarity=0.213 Sum_probs=61.7
Q ss_pred HHHHHHHHHHcCCeEEE---ecCCCCCCCCCCCCCCCCCCccCCchhHHHHHHHHHHHHHHHhCCC--C--------cee
Q 019395 105 LDNAFDWAEKYGVKVIV---DLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANR--P--------SLA 171 (341)
Q Consensus 105 ld~~i~~a~~~gi~vil---dlh~~~g~~~~~~~~g~~~~~~~w~~~~~~~~~~~~~~la~~y~~~--~--------~v~ 171 (341)
+=++++.+--..++||| |..+.+|.++|...|-.. +. ....-..++.++|.+.|.+. | +--
T Consensus 41 iF~af~~~p~~~vKVVIlGQDPYh~~gqA~GLaFSv~~-~~-----~~PpSL~NI~kEl~~d~~~~~~p~~g~L~~WA~Q 114 (212)
T TIGR00628 41 VFAWTRFCPPEDVKVVILGQDPYHGPGQAHGLAFSVKP-GV-----PIPPSLKNIFKELEADYPDFPPPKHGCLEAWARQ 114 (212)
T ss_pred HHHHHhcCChhheEEEEecCCCCCCCCCcceeeeECCC-CC-----CCCchHHHHHHHHHHHcCCCCCCCCCChHHHHhc
Confidence 33444555556777766 444445544443332110 00 11123456667777766421 1 112
Q ss_pred EEEeec--------CCCCCCCChHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCChhhhhhccCCCCcEEEEe-eec
Q 019395 172 AIELIN--------EPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRLGPADHKELLSFASGLSRVVIDV-HYY 240 (341)
Q Consensus 172 ~~el~N--------EP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~-H~Y 240 (341)
|.=|+| +|.. .....|..+...+++.|-+...+.+.++ || ..........+...+.|+.. |+=
T Consensus 115 GVLLLNt~LTV~~g~~~S--H~~~GWe~fT~~vI~~l~~~~~~vVf~L---WG-~~Aq~~~~~i~~~~h~il~s~HPS 186 (212)
T TIGR00628 115 GVLLLNTVLTVRAGQPGS--HSGLGWERFTDAVISRLSERRDGLVFML---WG-AHAQKKKSLIDAKKHLVLKSPHPS 186 (212)
T ss_pred CEEeeeCceEeeCCCCCc--cccCCHHHHHHHHHHHHHhcCCCeEEEE---eC-HHHHHHhccCCCCCeEEEeCCCCC
Confidence 233666 2331 1223699999999999987766544443 22 23344444433445555544 764
No 335
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=30.32 E-value=89 Score=31.71 Aligned_cols=52 Identities=19% Similarity=0.199 Sum_probs=38.9
Q ss_pred HhhccCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecC
Q 019395 59 WDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 124 (341)
Q Consensus 59 ~~~~~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh 124 (341)
+..-+.+.+++..++.|+..||+..+-. ..+.+...++.|+++|+.|...+.
T Consensus 88 ypddvv~~~v~~a~~~Gvd~irif~~ln--------------d~~n~~~~i~~ak~~G~~v~~~i~ 139 (582)
T TIGR01108 88 YADDVVERFVKKAVENGMDVFRIFDALN--------------DPRNLQAAIQAAKKHGAHAQGTIS 139 (582)
T ss_pred CchhhHHHHHHHHHHCCCCEEEEEEecC--------------cHHHHHHHHHHHHHcCCEEEEEEE
Confidence 3344567889999999999999854321 025688888999999998887653
No 336
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=30.24 E-value=1.8e+02 Score=26.89 Aligned_cols=60 Identities=18% Similarity=0.151 Sum_probs=39.5
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcc-cchHHHHHHHHHHHHHcCC-eEEEecCCCC
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV-GGSSKVLDNAFDWAEKYGV-KVIVDLHAAP 127 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~-~~~l~~ld~~i~~a~~~gi-~vildlh~~~ 127 (341)
.+.++.+++.|++.|.|++.- .++.....+. ...++.+-+.|+.+.+.|+ .|.+.....+
T Consensus 108 ~~~~~~L~~agl~~i~ISlds---~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~ 169 (331)
T PRK00164 108 ARRAAALKDAGLDRVNVSLDS---LDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMK 169 (331)
T ss_pred HHHHHHHHHcCCCEEEEEecc---CCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEEC
Confidence 456788999999999988742 1111000111 1357888899999999998 7776654443
No 337
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.24 E-value=41 Score=26.37 Aligned_cols=50 Identities=18% Similarity=0.280 Sum_probs=30.2
Q ss_pred cCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCC
Q 019395 63 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAP 127 (341)
Q Consensus 63 ~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~ 127 (341)
++.+|+..||+.||.+|==.=+ ...+| +.| . .+.+-++|++.||. .++.|
T Consensus 16 i~~~D~~~iaa~GFksiI~nRP--DgEe~--~QP----~---~~~i~~aa~~aGl~----y~~iP 65 (130)
T COG3453 16 ISPADIASIAALGFKSIICNRP--DGEEP--GQP----G---FAAIAAAAEAAGLT----YTHIP 65 (130)
T ss_pred CCHHHHHHHHHhccceecccCC--CCCCC--CCC----C---hHHHHHHHHhcCCc----eEEee
Confidence 5689999999999998742111 11111 112 2 33555788888964 55554
No 338
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=30.23 E-value=1.4e+02 Score=29.53 Aligned_cols=53 Identities=26% Similarity=0.363 Sum_probs=33.1
Q ss_pred CHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcC--CeEEEecCCC
Q 019395 64 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYG--VKVIVDLHAA 126 (341)
Q Consensus 64 ~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~g--i~vildlh~~ 126 (341)
+++.++.|-..|+|.+||.+++- .. +...+.++.+=+..++.| +.+++|+-+.
T Consensus 15 ~~e~l~~l~~~G~~~~R~N~shg---------~~-~~~~~~i~~ir~~~~~~~~~~~i~~Dl~Gp 69 (473)
T TIGR01064 15 SPEMLKKLLDAGMNVARLNFSHG---------SH-EEHGKRIENVREAAEKLGRPVAILLDTKGP 69 (473)
T ss_pred CHHHHHHHHHcCCCEEEEECCCC---------CH-HHHHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 37889999999999999988651 11 112233333323334444 5688998754
No 339
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=29.86 E-value=5.2e+02 Score=25.04 Aligned_cols=55 Identities=9% Similarity=0.090 Sum_probs=34.6
Q ss_pred hccCHHHHHHHHHC--CCCEEEcCcccccccCCCC----CCCcccchHHHHHHHHHHHHHcCCeEEE
Q 019395 61 SYITDEDFKFLSSN--GINAVRIPVGWWIANDPTP----PKPFVGGSSKVLDNAFDWAEKYGVKVIV 121 (341)
Q Consensus 61 ~~~~e~d~~~i~~~--G~N~VRlpi~~~~~~~~~~----~~~~~~~~l~~ld~~i~~a~~~gi~vil 121 (341)
..++++.++.|++. |++.|-|++.- .++.- ...+ ..+.+.++|+.+++.|..+.+
T Consensus 230 ~~i~~ell~~l~~~~~g~~~l~igvQS---gs~~vLk~m~R~~---~~~~~~~~v~~lr~~~~~i~i 290 (440)
T PRK14334 230 MNFTDDVIAAMAETPAVCEYIHLPVQS---GSDRVLRRMAREY---RREKYLERIAEIREALPDVVL 290 (440)
T ss_pred ccCCHHHHHHHHhcCcCCCeEEecccc---CCHHHHHHhCCCC---CHHHHHHHHHHHHHhCCCcEE
Confidence 34678999999985 58888877731 11100 0111 256778889999999765433
No 340
>PRK14047 putative methyltransferase; Provisional
Probab=29.83 E-value=2.4e+02 Score=25.92 Aligned_cols=68 Identities=13% Similarity=0.336 Sum_probs=47.8
Q ss_pred HHHHHHhhccCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHH--------HHHHHHHcCCe-EEEecC
Q 019395 54 VLQDHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDN--------AFDWAEKYGVK-VIVDLH 124 (341)
Q Consensus 54 ~~~~~~~~~~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~--------~i~~a~~~gi~-vildlh 124 (341)
.+-+.-+.-++++.++.|++.++++.=+ ..++|.. +-.++.++.|.+ ++..|.+-||. ++||.-
T Consensus 125 ~IYNSIn~s~~~~EieaL~~sdi~aaIi-----LaFn~~d--~sv~gr~~~le~gg~~~~~gll~~ae~~GI~~~liD~a 197 (310)
T PRK14047 125 AIYNSINMSIHESEIEALKQSDIDSSIV-----LGFNAMD--SSLKGRMEMLETGGGLLEKGLLEIADDCGITNILIDPS 197 (310)
T ss_pred HHHhhcCccCCHHHHHHHHhcCCCeEEE-----EecCCCC--CCHHHHHHHHHhcCccccccHHHHHHHcCCCceeeccc
Confidence 3334444567899999999999999876 2334432 222445666643 78999999995 888988
Q ss_pred CCCC
Q 019395 125 AAPG 128 (341)
Q Consensus 125 ~~~g 128 (341)
..|-
T Consensus 198 vtpl 201 (310)
T PRK14047 198 ITPM 201 (310)
T ss_pred ccCC
Confidence 8764
No 341
>cd06234 M14_Nna1_like_1 A bacterial subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP)-like proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins (such as alpha-tubulin in eukaryotes) to remove a C-terminal tyrosine. Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal domain might act as a folding domain.
Probab=29.80 E-value=2.4e+02 Score=25.40 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHcCCeEEEecCCCC
Q 019395 104 VLDNAFDWAEKYGVKVIVDLHAAP 127 (341)
Q Consensus 104 ~ld~~i~~a~~~gi~vildlh~~~ 127 (341)
....+.+...+.++.+.||+|...
T Consensus 138 Et~av~~~~~~~~~~~~ld~Hs~~ 161 (263)
T cd06234 138 EVFAVRQRMEETGVDFFLDVHGDE 161 (263)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCCC
Confidence 344455556678999999999874
No 342
>cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM). This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature.
Probab=29.71 E-value=1.7e+02 Score=26.07 Aligned_cols=48 Identities=25% Similarity=0.267 Sum_probs=33.6
Q ss_pred CHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEe
Q 019395 64 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVD 122 (341)
Q Consensus 64 ~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vild 122 (341)
.++.++.+.+.|+..||+...+... . .-..+.++++.|.++|+-|.+.
T Consensus 82 ~~~~l~~~~~~g~rGvRl~~~~~~~-------~----~~~~~~~~~~~~~~~gl~v~~~ 129 (263)
T cd01311 82 TDAELKEMHDAGVRGVRFNFLFGGV-------D----NKDELDEIAKRAAELGWHVQVY 129 (263)
T ss_pred CHHHHHHHHHCCCeEEEEecccCCC-------C----CHHHHHHHHHHHHHcCCEEEEE
Confidence 4688888999999999987543211 1 1245677888888888875553
No 343
>PRK14725 pyruvate kinase; Provisional
Probab=29.69 E-value=1.2e+02 Score=30.67 Aligned_cols=52 Identities=17% Similarity=0.197 Sum_probs=34.3
Q ss_pred CHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHH-HH--cCCeEEEecCCC
Q 019395 64 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWA-EK--YGVKVIVDLHAA 126 (341)
Q Consensus 64 ~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a-~~--~gi~vildlh~~ 126 (341)
+++-++.|.+.|+|.+||.+.+- + .+.+..+-+.|..| ++ +-+.|++||-+.
T Consensus 154 d~e~i~~Li~aGmdvaRINcAHg---~--------~e~w~~mi~~vR~a~~~~gr~~~I~mDL~GP 208 (608)
T PRK14725 154 DPDLVRRLLAAGMDIARINCAHD---D--------PEAWRAMIANVRTAEEELGRRCRIAMDLAGP 208 (608)
T ss_pred CHHHHHHHHHcCCCEeeeECCCC---C--------HHHHHHHHHHHHHHHHHcCCCEEEEEeCCCC
Confidence 36788999999999999987641 1 22344444444433 33 457799998754
No 344
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=29.54 E-value=2e+02 Score=28.33 Aligned_cols=60 Identities=18% Similarity=0.091 Sum_probs=40.1
Q ss_pred cCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEe
Q 019395 63 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVD 122 (341)
Q Consensus 63 ~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vild 122 (341)
.|.+..+.+.++|++.|++.++--....-.....+-...+.-+-++.+.|+++|+.||-|
T Consensus 275 ~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~viad 334 (475)
T TIGR01303 275 VSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVWAD 334 (475)
T ss_pred CCHHHHHHHHHhCCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHHcCCcEEEe
Confidence 489999999999999999887531111110001111235677777888889999988876
No 345
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=29.54 E-value=5.1e+02 Score=24.82 Aligned_cols=59 Identities=19% Similarity=0.110 Sum_probs=37.1
Q ss_pred ccCHHHHHHHHHCCCCEEEcCccccccc-CCCCCCCcccchHHHHHHHHHHHHHcCCeEEE
Q 019395 62 YITDEDFKFLSSNGINAVRIPVGWWIAN-DPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIV 121 (341)
Q Consensus 62 ~~~e~d~~~i~~~G~N~VRlpi~~~~~~-~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vil 121 (341)
-++++.++.+++.|+ .|.|++.=.... +......-..+.++.+-+.|+.+.++|+.+-+
T Consensus 112 ll~~e~~~~l~~~~~-~v~ISlDG~~~~hD~~R~~~~g~gsf~~v~~~i~~l~~~gi~~~i 171 (412)
T PRK13745 112 LLTDEWCEFFRENNF-LVGVSIDGPQEFHDEYRKNKMGKPSFVKVMKGINLLKKHGVEWNA 171 (412)
T ss_pred eCCHHHHHHHHHcCe-EEEEEecCCHHHhhhhcCCCCCCccHHHHHHHHHHHHHcCCCEEE
Confidence 357889999999998 788877421100 10000000124688888888999999987433
No 346
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=29.36 E-value=4.1e+02 Score=23.62 Aligned_cols=94 Identities=15% Similarity=0.237 Sum_probs=49.4
Q ss_pred cchHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCCccCCchhHHHHHHHHHHHHHHHhCCCCceeEEEeecC
Q 019395 99 GGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINE 178 (341)
Q Consensus 99 ~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NE 178 (341)
+..++.+.++++.|++.|...++ +|.. ... . . -.....+.+++.++.+++.-+...-.+++|..+=
T Consensus 81 ~~~~~~~~~~i~~A~~lG~~~v~-~~~g--~~~---------~-~-~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~~~ 146 (279)
T cd00019 81 EKSIERLKDEIERCEELGIRLLV-FHPG--SYL---------G-Q-SKEEGLKRVIEALNELIDKAETKGVVIALETMAG 146 (279)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEE-ECCC--CCC---------C-C-CHHHHHHHHHHHHHHHHHhccCCCCEEEEeCCCC
Confidence 34677888888888888888654 3322 100 0 0 0024556677777787776655554455554322
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHhcC--CCceEEEe
Q 019395 179 PLAPGVALDTLKSYYKAGYDAVRKYT--STAYVIMS 212 (341)
Q Consensus 179 P~~~~~~~~~~~~~~~~~~~aIR~~~--p~~~v~~~ 212 (341)
+.. .+..-..++.+.|++++ |+.-+.+.
T Consensus 147 ~~~------~~~~t~~~~~~li~~v~~~~~~g~~lD 176 (279)
T cd00019 147 QGN------EIGSSFEELKEIIDLIKEKPRVGVCID 176 (279)
T ss_pred CCC------CCCCCHHHHHHHHHhcCCCCCeEEEEE
Confidence 210 01111234455556665 55556665
No 347
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=29.28 E-value=50 Score=26.29 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=15.6
Q ss_pred cCHHHHHHHHHCCCCEE
Q 019395 63 ITDEDFKFLSSNGINAV 79 (341)
Q Consensus 63 ~~e~d~~~i~~~G~N~V 79 (341)
++++|++.|+++|+.+|
T Consensus 15 lt~~d~~~L~~~GiktV 31 (135)
T TIGR01244 15 LTKADAAQAAQLGFKTV 31 (135)
T ss_pred CCHHHHHHHHHCCCcEE
Confidence 57999999999999987
No 348
>PF03992 ABM: Antibiotic biosynthesis monooxygenase; InterPro: IPR007138 This domain is found in monooxygenases involved in the biosynthesis of several antibiotics by Streptomyces species, which can carry out oxygenation without the assistance of any of the prosthetic groups, metal ions or cofactors normally associated with activation of molecular oxygen. The structure of ActVA-Orf6 monooxygenase from Streptomyces coelicolor (Q53908 from SWISSPROT), which is involved in actinorhodin biosynthesis, reveals a dimeric alpha+beta barrel topology []. There is also a conserved histidine that is likely to be an active site residue. In S. coelicolor SCO1909 (Q9X9W3 from SWISSPROT) this domain occurs as a repeat. This domain is also found in protein LsrG, involved in the degradation of quorum-sensing molecule autoinducer-2 [], and in several uncharacterised proteins.; PDB: 1X7V_A 3F44_A 4DN9_B 1N5T_B 1LQ9_A 1N5Q_B 1N5V_A 1N5S_A 2GFF_B 3BM7_A ....
Probab=29.19 E-value=1.8e+02 Score=19.63 Aligned_cols=34 Identities=18% Similarity=0.131 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHHHh-CCCCceeEEEeecCCCC
Q 019395 148 SNVADTVAVIDFLAARY-ANRPSLAAIELINEPLA 181 (341)
Q Consensus 148 ~~~~~~~~~~~~la~~y-~~~~~v~~~el~NEP~~ 181 (341)
...+.+.+.++.+.+.. +..|..+++++.-.+..
T Consensus 13 ~~~~~f~~~~~~~~~~~~~~~~G~~~~~~~~~~~~ 47 (78)
T PF03992_consen 13 GKEEEFLAAFQELAEATLRKEPGCLSYELYRSLDD 47 (78)
T ss_dssp TGHHHHHHHHHHHHHHHHHTSTTEEEEEEEEESSS
T ss_pred chHHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCC
Confidence 34578888888888877 78899888998875543
No 349
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=29.16 E-value=1.3e+02 Score=26.21 Aligned_cols=42 Identities=14% Similarity=0.139 Sum_probs=33.0
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCe
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVK 118 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~ 118 (341)
|.-++.++++|.++|.+ . |-.+ ...++.|..+.+.|.++|++
T Consensus 138 etAiaml~dmG~~SiKf----f----PM~G----l~~leE~~avA~aca~~g~~ 179 (236)
T TIGR03581 138 ETAIAMLKDMGGSSVKF----F----PMGG----LKHLEEYAAVAKACAKHGFY 179 (236)
T ss_pred HHHHHHHHHcCCCeeeE----e----ecCC----cccHHHHHHHHHHHHHcCCc
Confidence 77899999999999996 1 1111 23688888999999999986
No 350
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=28.99 E-value=73 Score=29.57 Aligned_cols=59 Identities=20% Similarity=0.134 Sum_probs=36.8
Q ss_pred HHHHHHCCCCEEEcCcccccccC---------CCC------CCCcccchHHHHHHHHHHHHHcCCeEEEecCCC
Q 019395 68 FKFLSSNGINAVRIPVGWWIAND---------PTP------PKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA 126 (341)
Q Consensus 68 ~~~i~~~G~N~VRlpi~~~~~~~---------~~~------~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~ 126 (341)
+..++..|++.+++++......+ +.. ......+.+.-++++.+.|+++|+.+++|--+.
T Consensus 105 ~~~~~~~G~~v~~v~~~~~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~~ivD~a~~ 178 (353)
T TIGR03235 105 IRALERNGFTVTYLPVDESGRIDVDELADAIRPDTLLVSIMHVNNETGSIQPIREIAEVLEAHEAFFHVDAAQV 178 (353)
T ss_pred HHHHHhcCCEEEEEccCCCCcCCHHHHHHhCCCCCEEEEEEcccCCceeccCHHHHHHHHHHcCCEEEEEchhh
Confidence 34556679999888875321111 100 000113345568999999999999999997543
No 351
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=28.98 E-value=4.1e+02 Score=24.18 Aligned_cols=86 Identities=14% Similarity=0.023 Sum_probs=45.7
Q ss_pred HHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCCccCCc-hhHHHHHHHHHHHHHHHhCCCCce-eEEEeecCCCCCCCC
Q 019395 108 AFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWG-DSNVADTVAVIDFLAARYANRPSL-AAIELINEPLAPGVA 185 (341)
Q Consensus 108 ~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~~w~-~~~~~~~~~~~~~la~~y~~~~~v-~~~el~NEP~~~~~~ 185 (341)
++. +.+.+..++.-++...+... . +... ...-. +..++++++-+-.++++|+ ...| +=||- |. ...
T Consensus 52 ~~~-~~k~~~~~l~~~~~~~~~~~--~--~~~~-~~~l~~~~~R~~fi~~iv~~~~~~~-~dGidiD~E~---~~--~~d 119 (298)
T cd06549 52 IIA-AAKAHPKVLPLVQNISGGAW--D--GKNI-ARLLADPSARAKFIANIAAYLERNQ-ADGIVLDFEE---LP--ADD 119 (298)
T ss_pred HHH-HHHcCCceeEEEEecCCCCC--C--HHHH-HHHhcCHHHHHHHHHHHHHHHHHhC-CCCEEEecCC---CC--hhH
Confidence 344 44467777776676543211 0 0000 00011 4566777777777777774 2333 22332 11 234
Q ss_pred hHHHHHHHHHHHHHHHhcCC
Q 019395 186 LDTLKSYYKAGYDAVRKYTS 205 (341)
Q Consensus 186 ~~~~~~~~~~~~~aIR~~~p 205 (341)
.+.+..+++++..++++.+-
T Consensus 120 ~~~~~~fl~eL~~~l~~~~~ 139 (298)
T cd06549 120 LPKYVAFLSELRRRLPAQGK 139 (298)
T ss_pred HHHHHHHHHHHHHHhhhcCc
Confidence 56788888888888887643
No 352
>cd06419 GH25_muramidase_2 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=28.95 E-value=3.6e+02 Score=22.84 Aligned_cols=116 Identities=16% Similarity=0.082 Sum_probs=67.6
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCCccC
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQE 144 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~~ 144 (341)
.-|+..+++.|+..|=|-- +.+..|.. ..+.+-.+.|++.||.|=.-..-.+.
T Consensus 19 ~IDw~~v~~~gi~Fv~iKA--------TEG~~~~D---~~f~~n~~~A~~~Gl~vGaYHf~~~~---------------- 71 (190)
T cd06419 19 YIDFNSLQSNGISFVYLRA--------TQGASYFD---DNFLSNFSRAQGTGLSVGVIHTFSFS---------------- 71 (190)
T ss_pred ccCHHHHHhCCCeEEEEEe--------ecCCCccC---hhHHHHHHHHHHCCCCEEEEEEeecC----------------
Confidence 4578889999977665521 22222222 45667788999999885332111111
Q ss_pred CchhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCceEEEe
Q 019395 145 WGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMS 212 (341)
Q Consensus 145 w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~v~~~ 212 (341)
....+++..+++.+...-.+-|-++-+|.. ... +.+.+.+.+++.+.++.|++.....+|+..
T Consensus 72 --~~~~~QA~~F~~~v~~~~~~lp~vlD~E~~--~~~-~~~~~~~~~~~~~fl~~ve~~~g~~piIYt 134 (190)
T cd06419 72 --STAAAQYRYFIRKVGNNTGNLPIAIYVSYY--GDY-NPDTKKSTQKLGLLVQLLEQHYNQSVIIRG 134 (190)
T ss_pred --CCHHHHHHHHHHhCCCCCCCCCeEEEEecC--CCC-CCCHHHHHHHHHHHHHHHHHHHCCCeEEEe
Confidence 022344555555554333344444434432 211 245688999999999999998766667665
No 353
>PF01619 Pro_dh: Proline dehydrogenase; InterPro: IPR002872 The proline oxidase/dehydrogenase 1.5.99.8 from EC is responsible for the first step in the conversion of proline to glutamate for use as a carbon and nitrogen source. The enzyme requires FAD as a cofactor, and is induced by proline.; GO: 0004657 proline dehydrogenase activity, 0006537 glutamate biosynthetic process, 0006562 proline catabolic process, 0055114 oxidation-reduction process; PDB: 2G37_A 2EKG_B 4F9I_B 3HAZ_A 2FZM_A 3E2Q_A 3E2S_A 2FZN_A 1K87_A 1TJ2_A ....
Probab=28.93 E-value=1.1e+02 Score=28.31 Aligned_cols=27 Identities=22% Similarity=0.302 Sum_probs=20.6
Q ss_pred chHHHHHHHHHHHHHcCCeEEEecCCC
Q 019395 100 GSSKVLDNAFDWAEKYGVKVIVDLHAA 126 (341)
Q Consensus 100 ~~l~~ld~~i~~a~~~gi~vildlh~~ 126 (341)
..++.++++.+.|.++|+.|.||.-..
T Consensus 89 ~~~~~l~~i~~~A~~~~v~v~iDaE~~ 115 (313)
T PF01619_consen 89 RALERLRRICERAKEHGVFVLIDAEES 115 (313)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEE----G
T ss_pred HHHHHHHHHHHHhhcCCcEEEEcCCCc
Confidence 367899999999999999999998654
No 354
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=28.86 E-value=4.8e+02 Score=24.24 Aligned_cols=57 Identities=11% Similarity=0.021 Sum_probs=35.4
Q ss_pred HHHHHHHHHCCC--CEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecC
Q 019395 65 DEDFKFLSSNGI--NAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 124 (341)
Q Consensus 65 e~d~~~i~~~G~--N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh 124 (341)
++.++.+++.|| .+|=|-+.|+. ....-.++++.+...+.+++.++++|+++++-+|
T Consensus 27 ~~~~~~~~~~~iP~d~i~lD~~~~~---~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~ 85 (339)
T cd06604 27 REIADEFRERDIPCDAIYLDIDYMD---GYRVFTWDKERFPDPKELIKELHEQGFKVVTIID 85 (339)
T ss_pred HHHHHHHHHhCCCcceEEECchhhC---CCCceeeccccCCCHHHHHHHHHHCCCEEEEEEe
Confidence 455566677764 44444444431 1111234455556678999999999999997655
No 355
>PRK15108 biotin synthase; Provisional
Probab=28.68 E-value=4.9e+02 Score=24.35 Aligned_cols=130 Identities=14% Similarity=0.124 Sum_probs=71.5
Q ss_pred ccCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCc-ccchHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCC
Q 019395 62 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF-VGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRD 140 (341)
Q Consensus 62 ~~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~-~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~ 140 (341)
.++++.++.|+++|++.+-+.+. . .|.....+ ....++..-+.++.|++.|+.+-.. ..-|. |
T Consensus 133 ~ls~e~l~~LkeAGld~~n~~le--T--~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg--~i~Gl-------g--- 196 (345)
T PRK15108 133 TLSESQAQRLANAGLDYYNHNLD--T--SPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSG--GIVGL-------G--- 196 (345)
T ss_pred cCCHHHHHHHHHcCCCEEeeccc--c--ChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeE--EEEeC-------C---
Confidence 46899999999999998877552 1 12111122 2346777778889999999865332 21111 1
Q ss_pred CccCCchhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCC---CChHHHHHHHHHHHHHHHhcCCCceEEEeCCCC
Q 019395 141 GFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPG---VALDTLKSYYKAGYDAVRKYTSTAYVIMSNRLG 216 (341)
Q Consensus 141 ~~~~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~---~~~~~~~~~~~~~~~aIR~~~p~~~v~~~~~~~ 216 (341)
+..+..++.+..+.+. .+.+..+.+-.++-+.+.+ .+.-. ..-+-+++.+.|=..|+..+-+.++|.
T Consensus 197 -------Et~ed~v~~~~~l~~l-~~~~~~ip~~~~~P~~gTpl~~~~~~~-~~e~lr~iAi~Rl~lp~~~i~i~~g~~ 266 (345)
T PRK15108 197 -------ETVKDRAGLLLQLANL-PTPPESVPINMLVKVKGTPLADNDDVD-AFDFIRTIAVARIMMPTSYVRLSAGRE 266 (345)
T ss_pred -------CCHHHHHHHHHHHHhc-cCCCCEEEeCCccCCCCCCCCCCCCCC-HHHHHHHHHHHHHHCCCceeeecccHh
Confidence 2234444555544432 2222223333443322211 11101 123346677888888998888887663
No 356
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=28.54 E-value=61 Score=29.63 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHcCCeEEEe
Q 019395 101 SSKVLDNAFDWAEKYGVKVIVD 122 (341)
Q Consensus 101 ~l~~ld~~i~~a~~~gi~vild 122 (341)
.++.|+.+-+.|+++||+|.+|
T Consensus 143 s~~el~ai~~~a~~~gl~lhmD 164 (290)
T PF01212_consen 143 SLEELRAISELAREHGLPLHMD 164 (290)
T ss_dssp -HHHHHHHHHHHHHHT-EEEEE
T ss_pred CHHHHHHHHHHHHhCceEEEEe
Confidence 3799999999999999999998
No 357
>PRK12677 xylose isomerase; Provisional
Probab=28.53 E-value=3.2e+02 Score=26.08 Aligned_cols=91 Identities=22% Similarity=0.198 Sum_probs=51.6
Q ss_pred chHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCCccCCchhHHHHHHHHHHHHHHHhCCC--CceeEEEee-
Q 019395 100 GSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANR--PSLAAIELI- 176 (341)
Q Consensus 100 ~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~~w~~~~~~~~~~~~~~la~~y~~~--~~v~~~el~- 176 (341)
..++.+.+.|+.|.+.|...|+-.-+..|. +..+. ..+ ....+++++.++.+++.-++. .-.+++|..
T Consensus 111 ~Ai~~~~r~IdlA~eLGa~~Vvv~~G~~g~----~~~~~----~d~-~~a~~~~~eaL~~l~~~A~~~G~gV~laIEpkp 181 (384)
T PRK12677 111 YALRKVLRNIDLAAELGAKTYVMWGGREGA----EYDAA----KDV-RAALDRYREAIDLLAAYVKDQGYDLRFALEPKP 181 (384)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEeeCCCCc----cCccc----CCH-HHHHHHHHHHHHHHHHHHHhcCCCcEEEEccCC
Confidence 368889999999999999876544332221 11110 001 355677777888887766442 244667765
Q ss_pred cCCCCCCCChHHHHHHHHHHHHHHHhcC
Q 019395 177 NEPLAPGVALDTLKSYYKAGYDAVRKYT 204 (341)
Q Consensus 177 NEP~~~~~~~~~~~~~~~~~~~aIR~~~ 204 (341)
|||.. ..+..-...+...|++++
T Consensus 182 ~ep~~-----~~~l~t~~~al~li~~lg 204 (384)
T PRK12677 182 NEPRG-----DILLPTVGHALAFIATLE 204 (384)
T ss_pred CCCCC-----CeeeCCHHHHHHHHHHhC
Confidence 34542 122233444555566665
No 358
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=28.52 E-value=1.2e+02 Score=27.81 Aligned_cols=57 Identities=16% Similarity=0.152 Sum_probs=36.9
Q ss_pred HHHHHHHHCCC--CEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCC
Q 019395 66 EDFKFLSSNGI--NAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 125 (341)
Q Consensus 66 ~d~~~i~~~G~--N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~ 125 (341)
+-++.+++.|+ .+|=|.+.|.... ..-.++.+.+.....+++..++.|+++++-++-
T Consensus 34 ~~~~~~~~~~iP~d~i~iD~~w~~~~---g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P 92 (303)
T cd06592 34 NYAQEIIDNGFPNGQIEIDDNWETCY---GDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHP 92 (303)
T ss_pred HHHHHHHHcCCCCCeEEeCCCccccC---CccccChhhCCCHHHHHHHHHHCCCeEEEEECC
Confidence 34455567774 4666666664221 112344445666889999999999999987663
No 359
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=28.24 E-value=3.1e+02 Score=21.95 Aligned_cols=47 Identities=19% Similarity=0.309 Sum_probs=33.8
Q ss_pred CCCCceeEEEe-ecCCCCCCCChHHHHHHHHHHHHHHHhcCCCceEEEe
Q 019395 165 ANRPSLAAIEL-INEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMS 212 (341)
Q Consensus 165 ~~~~~v~~~el-~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~v~~~ 212 (341)
...|.++.+.+ .|.... ..+.+.+.+-++++++.+|+..|+..|++.
T Consensus 46 ~~~pd~vvl~~G~ND~~~-~~~~~~~~~~l~~li~~~~~~~~~~~vi~~ 93 (169)
T cd01828 46 ALQPKAIFIMIGINDLAQ-GTSDEDIVANYRTILEKLRKHFPNIKIVVQ 93 (169)
T ss_pred ccCCCEEEEEeeccCCCC-CCCHHHHHHHHHHHHHHHHHHCCCCeEEEE
Confidence 34565554443 477643 456789999999999999998887777765
No 360
>PF07454 SpoIIP: Stage II sporulation protein P (SpoIIP); InterPro: IPR010897 This family contains the bacterial stage II sporulation protein P (SpoIIP) (approximately 350 residues long). It has been shown that a block in polar cytokinesis in Bacillus subtilis is mediated partly by transcription of spoIID, spoIIM and spoIIP. This inhibition of polar division is involved in the locking in of asymmetry after the formation of a polar septum during sporulation []. SpoIIP is one of the three genes (spoIID, spoIIM and spoIIP, [, , ]), under the control of sigma E, that have been shown to be essential for the engulfment of the forespore by the mother cell. Their products are involved in degradation of the septal peptidoglycan and mutations in spoIID, spoIIM or spoIIP block sporulation at morphological stage II, prior to the stage of engulfment. These three genes are absolutely conserved (sometimes even duplicated) in all endospore formers [].
Probab=28.08 E-value=1.8e+02 Score=26.30 Aligned_cols=56 Identities=16% Similarity=0.189 Sum_probs=34.6
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHc-CCeEEEecCCCC
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKY-GVKVIVDLHAAP 127 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~-gi~vildlh~~~ 127 (341)
+.--+.|.+.|++++..--.. +. ..|...+-.-...+-+.++++ +|.++||||...
T Consensus 114 ~~L~~~Le~~Gi~v~h~~t~~----d~---~~y~~sY~~Sr~tv~~~l~~~p~i~~~iDiHRDs 170 (268)
T PF07454_consen 114 DRLAQELEKYGIGVIHDKTIH----DY---PSYNQSYKRSRETVKKALKENPDIKVVIDIHRDS 170 (268)
T ss_pred HHHHHHHHHCCCcEEEeCCCC----Cc---chhHHHHHHHHHHHHHHHHHCCCceEEEEecCCC
Confidence 555667899999998863311 11 134333334444444555655 789999999863
No 361
>KOG4518 consensus Hydroxypyruvate isomerase [Carbohydrate transport and metabolism]
Probab=27.86 E-value=4e+02 Score=23.03 Aligned_cols=129 Identities=19% Similarity=0.246 Sum_probs=76.7
Q ss_pred HHHHHHHHCCCCEEEcCcccccccC----------------CCCCCCcc-------------cchHHHHHHHHHHHHHcC
Q 019395 66 EDFKFLSSNGINAVRIPVGWWIAND----------------PTPPKPFV-------------GGSSKVLDNAFDWAEKYG 116 (341)
Q Consensus 66 ~d~~~i~~~G~N~VRlpi~~~~~~~----------------~~~~~~~~-------------~~~l~~ld~~i~~a~~~g 116 (341)
+-+...++.||..|-+|+++-.-.+ ..+++..+ ...-+.||..|+.|+..|
T Consensus 20 ~r~~~a~~~gf~~vev~~p~~e~a~~~~~~~~~~~~~~~~~~a~~~~~d~~~~G~~svpg~~k~FR~~Ld~ai~yAkalg 99 (264)
T KOG4518|consen 20 QRYGAAASAGFKLVEVSIPYTEPAEKLREAADEYHLKHTLINAPPGNWDDGFRGLASVPGAKKEFRKSLDTAIEYAKALG 99 (264)
T ss_pred HHHHHHHhCCceEEEecCCCCChHHHHHHhhhcchhhhhhccCCCCChhhhccCcccCCchHHHHHHHHHHHHHHHHHhC
Confidence 4455667899999999997621000 00111111 113467899999999999
Q ss_pred CeEEEecCCCCCCCCCCCCCCCCCCccCCchhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHH
Q 019395 117 VKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAG 196 (341)
Q Consensus 117 i~vildlh~~~g~~~~~~~~g~~~~~~~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~~~~~~~~~~ 196 (341)
--=| |-..|- ..+|.. . ....+.+.+-++.-|+.++.+.-|--+|.+|--.. +.....-++++
T Consensus 100 C~rI---HlmAG~----~k~g~d----~--~~~~~ty~eNlr~AA~~l~~~kligliEPINkyt~----PgY~ln~y~~A 162 (264)
T KOG4518|consen 100 CCRI---HLMAGI----PKSGDD----L--ENAHQTYSENLRFAAEKLKEHKLIGLIEPINKYTI----PGYHLNNYEDA 162 (264)
T ss_pred CceE---EEeccC----CCCCch----H--HHHHHHHHHHHHHHHHHhhhhceeeeecchhcccC----cchhcCCHHHH
Confidence 6432 222211 011110 0 14455666778888899998887777888884332 23455557778
Q ss_pred HHHHHhcCCCceEEE
Q 019395 197 YDAVRKYTSTAYVIM 211 (341)
Q Consensus 197 ~~aIR~~~p~~~v~~ 211 (341)
.+.+..+..+.+-+.
T Consensus 163 a~Ilq~v~~~Nlqlq 177 (264)
T KOG4518|consen 163 ADILQMVQSNNLQLQ 177 (264)
T ss_pred HHHHHHhcCCceehh
Confidence 888888777665544
No 362
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=27.77 E-value=92 Score=30.44 Aligned_cols=70 Identities=17% Similarity=0.202 Sum_probs=44.4
Q ss_pred cCceeeeccCC-CCccc--C---CcccccccccCCcchhh-------hhhhhcCcch------------------HHHHH
Q 019395 7 SETRLTADYGS-SSWDD--S---DPSVFKLNIVSTLRGEY-------QITNGFGPDK------------------APQVL 55 (341)
Q Consensus 7 ~~~~~~~~~~~-~~~~~--~---~p~~f~~~~~~~~~~~~-------~~~~~~g~~~------------------~~~~~ 55 (341)
.||....+|++ +.|+- . ...++.+...+.++|-| .|.+.+|.+. .+..=
T Consensus 19 ~EGa~~~dGkg~s~wD~~~~~~~~~~~~~~~~~~~a~d~YhrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~g 98 (460)
T COG2723 19 VEGAWNEDGKGPSDWDVWVHDEIPGRLVSGDPPEEASDFYHRYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKG 98 (460)
T ss_pred ccCCcCCCCCCCeeeeeeeccccCCcccCCCCCccccchhhhhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHH
Confidence 68999999999 88855 2 34555565555666655 3555555321 11111
Q ss_pred HHHHhhccCHHHHHHHHHCCCCEEEc
Q 019395 56 QDHWDSYITDEDFKFLSSNGINAVRI 81 (341)
Q Consensus 56 ~~~~~~~~~e~d~~~i~~~G~N~VRl 81 (341)
=+|| .+-|+.|++.|+.-+=-
T Consensus 99 l~fY-----~~l~del~~~gIep~vT 119 (460)
T COG2723 99 LRFY-----DRLFDELKARGIEPFVT 119 (460)
T ss_pred HHHH-----HHHHHHHHHcCCEEEEE
Confidence 1455 77899999999987644
No 363
>PF14881 Tubulin_3: Tubulin domain
Probab=27.69 E-value=3.7e+02 Score=22.59 Aligned_cols=53 Identities=17% Similarity=0.234 Sum_probs=38.4
Q ss_pred hHHH-HHHHHHHH-HHcCCeEEEecCCCCCCCCCCCCCCCCCCccCCchhHHHHHHHHHHHHHHHhCCCCceeEEEe
Q 019395 101 SSKV-LDNAFDWA-EKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIEL 175 (341)
Q Consensus 101 ~l~~-ld~~i~~a-~~~gi~vildlh~~~g~~~~~~~~g~~~~~~~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el 175 (341)
.+++ |...++.| .=.|+.|+.|++..=|+ -..++++.|...|.+.+.+++|.+
T Consensus 59 ~~D~~lR~f~EECD~lQGfQ~~~d~d~gwgG----------------------fas~~Le~L~DEy~k~~i~~~~~~ 113 (180)
T PF14881_consen 59 FFDRDLRFFLEECDSLQGFQVLTDVDDGWGG----------------------FASSLLEHLRDEYPKKPIIWVWGL 113 (180)
T ss_pred HHHHHHHHHHHHcccccceEEEecCCCchHh----------------------HHHHHHHHHHHHcCCCceEEeecC
Confidence 4554 78888888 45799999998764221 344788999999988776666655
No 364
>PRK09989 hypothetical protein; Provisional
Probab=27.66 E-value=1.1e+02 Score=27.19 Aligned_cols=57 Identities=14% Similarity=0.113 Sum_probs=37.8
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEec
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDL 123 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildl 123 (341)
++-++..+.+|...||+..++.. .........+...+.|.++.+.|+++|+.+.+-.
T Consensus 88 ~~~i~~A~~lg~~~v~v~~g~~~--~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~ 144 (258)
T PRK09989 88 DLALEYALALNCEQVHVMAGVVP--AGEDAERYRAVFIDNLRYAADRFAPHGKRILVEA 144 (258)
T ss_pred HHHHHHHHHhCcCEEEECccCCC--CCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 56677778999999997655421 0000011112356888889999999999988754
No 365
>PRK15492 triosephosphate isomerase; Provisional
Probab=27.58 E-value=4.5e+02 Score=23.59 Aligned_cols=54 Identities=17% Similarity=0.052 Sum_probs=37.7
Q ss_pred CHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCC
Q 019395 64 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 125 (341)
Q Consensus 64 ~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~ 125 (341)
-|--...|+++|++.|=|..+=- ...+ .+.-+.+.+-+..|.++||.+|+.+-.
T Consensus 83 GevSa~mLkd~G~~~viiGHSER-------R~~f-~Etd~~v~~Kv~~a~~~gl~pIvCiGE 136 (260)
T PRK15492 83 GDISPLMLKEIGTQLVMIGHSER-------RHKF-GETDQEENAKVLAALKHDFTTLLCVGE 136 (260)
T ss_pred CcCCHHHHHHcCCCEEEECcccc-------cccc-CcchHHHHHHHHHHHHCCCEEEEEcCC
Confidence 35567788999999988765421 1112 223466777889999999999998653
No 366
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=27.23 E-value=1.8e+02 Score=26.95 Aligned_cols=148 Identities=15% Similarity=0.125 Sum_probs=83.2
Q ss_pred HHhhccCHHHHHHHHHCCCCEEEc-Ccccc-cccC----------------CCCC----CCc--ccchHHHHHHHHHHHH
Q 019395 58 HWDSYITDEDFKFLSSNGINAVRI-PVGWW-IAND----------------PTPP----KPF--VGGSSKVLDNAFDWAE 113 (341)
Q Consensus 58 ~~~~~~~e~d~~~i~~~G~N~VRl-pi~~~-~~~~----------------~~~~----~~~--~~~~l~~ld~~i~~a~ 113 (341)
||..++ ++-++.|++.|+..|-+ |+.-. .... +.+. ..| .+.+++.+-+.|..+.
T Consensus 97 y~~P~i-~~~l~~l~~~g~~~ivvlPLyPqyS~~ttgs~~~~~~~~~~~~~~~~~~~~i~~~~~~p~yi~a~~~~i~~~l 175 (316)
T PF00762_consen 97 YGPPSI-EDALEELKADGVDRIVVLPLYPQYSSSTTGSYLDEVERALKKSRPNPKVRFIPSFYDHPAYIEALAERIREAL 175 (316)
T ss_dssp SSSSBH-HHHHHHHHHTT-SEEEEEESSSS--TTTHHHHHHHHHHHHHHTHSSSEEEEE---TT-HHHHHHHHHHHHHHH
T ss_pred cCCCCH-HHHHHHHHHcCCCeEEEEeCCCchhHhhHHHHHHHHHHHHHhcCCCCeEEEeCCccCCHHHHHHHHHHHHHHH
Confidence 344444 88999999999998876 22100 0000 0000 011 1345566666555554
Q ss_pred Hc-----CCeEEEecCCCCCCCCCCCCCCCCCCccCCchhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCChHH
Q 019395 114 KY-----GVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDT 188 (341)
Q Consensus 114 ~~-----gi~vildlh~~~g~~~~~~~~g~~~~~~~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~~ 188 (341)
+. +..+|+..|+.|...- ...| +.+.++..+..+.|+++..-....++|+----| .+.
T Consensus 176 ~~~~~~~~~~llfSaHglP~~~~--~~~G---------dpY~~~~~~t~~~i~~~l~~~~~~~~fQS~~g~------~~W 238 (316)
T PF00762_consen 176 ERFPRGEPDHLLFSAHGLPQRYV--EDKG---------DPYPAQCEETARLIAERLGLPEWRLAFQSRFGP------GEW 238 (316)
T ss_dssp TTS-HCCCEEEEEEEE--BHHHH--TCCT----------SHHHHHHHHHHHHHHHTTTSSEEEEEES-SSS------S-B
T ss_pred HhcCCCCCCEEEEccCCCCcccc--ccCC---------CChHHHHHHHHHHHHHHcCCCceEEEEECCCCC------CCC
Confidence 33 4889999999875311 0011 246777778888899888655556777754333 134
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEeCCCCCCChhhh
Q 019395 189 LKSYYKAGYDAVRKYTSTAYVIMSNRLGPADHKEL 223 (341)
Q Consensus 189 ~~~~~~~~~~aIR~~~p~~~v~~~~~~~~~~~~~~ 223 (341)
+....++.++.+.+.+-++++++..+|-+...+.+
T Consensus 239 L~P~~~~~l~~l~~~G~~~V~v~p~gFv~D~lETl 273 (316)
T PF00762_consen 239 LGPSTEDVLEELAKEGVKRVVVVPPGFVSDCLETL 273 (316)
T ss_dssp SSSBHHHHHHHHHHCT-SEEEEEETT-SSSSHHHH
T ss_pred ccccHHHHHHHHHhcCCCeEEEECCccccccHhHH
Confidence 55667778888888888888888887765444443
No 367
>TIGR00629 uvde UV damage endonuclease UvdE. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=27.19 E-value=5.1e+02 Score=24.02 Aligned_cols=159 Identities=15% Similarity=0.103 Sum_probs=77.2
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccC-CCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCCcc
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIAND-PTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQ 143 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~-~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~ 143 (341)
..-+++..+.|+...||+=.-..+.. |.-+..+.+..-+.+.++=+.|+++||+ |++|.....+ -.|.
T Consensus 55 ~~~L~~n~~~~I~f~RisS~l~P~ash~~~~~~~~~~~~~~l~~iG~~a~~~~iR--LS~Hp~qfi~---LnS~------ 123 (312)
T TIGR00629 55 MKTLHWNIGHGIPFYRFSSSIFPFASHPDVGYDLVTFAQKELREIGELAKTHQHR--LTFHPGQFTQ---FTSP------ 123 (312)
T ss_pred HHHHHHHHHcCCcEEecCccccCcCcCchhhhhHHHHHHHHHHHHHHHHHHcCeE--EEECCCcccc---CCCC------
Confidence 56667778899999999743222221 1111122223445677777889999988 7778542110 0010
Q ss_pred CCchhHHHHHHHHHHHHHHHh---CCCC-----ceeEEEeecCCCCC-CCChHHHHHHHHHHHHHHHhcCCCceEEEeCC
Q 019395 144 EWGDSNVADTVAVIDFLAARY---ANRP-----SLAAIELINEPLAP-GVALDTLKSYYKAGYDAVRKYTSTAYVIMSNR 214 (341)
Q Consensus 144 ~w~~~~~~~~~~~~~~la~~y---~~~~-----~v~~~el~NEP~~~-~~~~~~~~~~~~~~~~aIR~~~p~~~v~~~~~ 214 (341)
.++.++..++.+..-++.+ +-.. .++-+ -|.+. +...+.+.++.+..-+....+ +..+.++..
T Consensus 124 --~~evv~~Si~~L~~ha~~l~~mg~~~~~~~~~~ivi----H~Gg~~gdk~~alerf~~n~~~L~~~i--~~rL~lEnd 195 (312)
T TIGR00629 124 --RESVVKSAIRDLAYHDEMLSAMKLAEQLNKDAVIII----HIGGAFGNKDTTLARFHQNYKRLSQSI--KERLVLEND 195 (312)
T ss_pred --CHHHHHHHHHHHHHHHHHHHHcCCCcccCCCceEEE----ccCcCCCCHHHHHHHHHHHHHHhhHHH--HhcEEeccC
Confidence 0355666666655544442 1111 22211 12110 112233444433333222222 144555532
Q ss_pred CCCCChhhhhhccC-CCCcEEEEeeecCC
Q 019395 215 LGPADHKELLSFAS-GLSRVVIDVHYYNL 242 (341)
Q Consensus 215 ~~~~~~~~~~~~~~-~~~~~v~~~H~Y~~ 242 (341)
--.....+.+.... ..-.+|+|+|+...
T Consensus 196 ~k~~sl~evL~lc~e~~iP~v~D~hHh~~ 224 (312)
T TIGR00629 196 DVTWTVEDLLPVCEELNIPFVLDFHHHNI 224 (312)
T ss_pred CCcCCHHHHHHHHHhcCCCEEEEhHHhhh
Confidence 11134455555321 23668999999865
No 368
>PRK08508 biotin synthase; Provisional
Probab=27.16 E-value=4.7e+02 Score=23.58 Aligned_cols=127 Identities=12% Similarity=0.009 Sum_probs=68.0
Q ss_pred ccCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcc-cchHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCC
Q 019395 62 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV-GGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRD 140 (341)
Q Consensus 62 ~~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~-~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~ 140 (341)
..+++.++.|+++|++.+=+.+.= . +.-..... ...++..-+.++.|++.||.|--.+ ..|. |
T Consensus 99 ~~~~e~l~~Lk~aGld~~~~~lEt--~--~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~--I~Gl-------G--- 162 (279)
T PRK08508 99 TASVEQLKELKKAGIFSYNHNLET--S--KEFFPKICTTHTWEERFQTCENAKEAGLGLCSGG--IFGL-------G--- 162 (279)
T ss_pred CCCHHHHHHHHHcCCCEEcccccc--h--HHHhcCCCCCCCHHHHHHHHHHHHHcCCeeccee--EEec-------C---
Confidence 347999999999999987764421 0 00000111 2356777778889999998652211 1111 1
Q ss_pred CccCCchhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCC-ChHHHHHHHHHHHHHHHhcCCCceEEEeCC
Q 019395 141 GFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGV-ALDTLKSYYKAGYDAVRKYTSTAYVIMSNR 214 (341)
Q Consensus 141 ~~~~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~-~~~~~~~~~~~~~~aIR~~~p~~~v~~~~~ 214 (341)
+..+..++.+..|.+ ...+. | -+.+++.-...+. ....=...+.+++...|=.-|+..|-+.++
T Consensus 163 -------Et~ed~~~~l~~lr~-L~~~s-v-pl~~~~p~~~t~~~~~~~~~~~~lr~iAv~Rl~lp~~~i~~~~g 227 (279)
T PRK08508 163 -------ESWEDRISFLKSLAS-LSPHS-T-PINFFIPNPALPLKAPTLSADEALEIVRLAKEALPNARLMVAGG 227 (279)
T ss_pred -------CCHHHHHHHHHHHHc-CCCCE-E-eeCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCceeeecCC
Confidence 334566666666643 33322 2 2333333111010 001112244566777788889888887754
No 369
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=27.11 E-value=2e+02 Score=24.19 Aligned_cols=45 Identities=24% Similarity=0.315 Sum_probs=33.4
Q ss_pred HHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCC
Q 019395 67 DFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA 126 (341)
Q Consensus 67 d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~ 126 (341)
.++.+++.|.+.+=++.. + .-..++++++.|+++|+.+++++++.
T Consensus 69 ~~~~~~~aGad~i~~h~~--------~-------~~~~~~~~i~~~~~~g~~~~v~~~~~ 113 (202)
T cd04726 69 EAEMAFKAGADIVTVLGA--------A-------PLSTIKKAVKAAKKYGKEVQVDLIGV 113 (202)
T ss_pred HHHHHHhcCCCEEEEEee--------C-------CHHHHHHHHHHHHHcCCeEEEEEeCC
Confidence 467788888887776431 0 11457789999999999999997764
No 370
>PRK14566 triosephosphate isomerase; Provisional
Probab=27.07 E-value=4.7e+02 Score=23.55 Aligned_cols=54 Identities=20% Similarity=0.247 Sum_probs=37.8
Q ss_pred CHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCC
Q 019395 64 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 125 (341)
Q Consensus 64 ~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~ 125 (341)
-|--.+.|+++|++.|=|..+=- ...+ .+.=+.+.+-++.|.++||.+|+.+-.
T Consensus 84 GevS~~mL~d~G~~~viiGHSER-------R~~f-~Etd~~v~~Kv~~al~~gl~pIvCvGE 137 (260)
T PRK14566 84 GEVSGQMLKDAGCRYVIIGHSER-------RRMY-GETSNIVAEKFAAAQKHGLTPILCVGE 137 (260)
T ss_pred CccCHHHHHHcCCCEEEECcccc-------cCCC-CcCHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 35667788999999998765421 1112 223456777889999999999998653
No 371
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=26.69 E-value=1.3e+02 Score=27.53 Aligned_cols=62 Identities=23% Similarity=0.284 Sum_probs=46.4
Q ss_pred HHhhccCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCCC
Q 019395 58 HWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGS 129 (341)
Q Consensus 58 ~~~~~~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~ 129 (341)
|.+.--+.+++...-++||++|=+--+ ..|| ++.++.-.++++.|+++|+.|=-.|-+..|.
T Consensus 83 HLDHg~~~e~i~~ai~~GftSVM~DgS---------~lp~-eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ 144 (285)
T PRK07709 83 HLDHGSSFEKCKEAIDAGFTSVMIDAS---------HHPF-EENVETTKKVVEYAHARNVSVEAELGTVGGQ 144 (285)
T ss_pred ECCCCCCHHHHHHHHHcCCCEEEEeCC---------CCCH-HHHHHHHHHHHHHHHHcCCEEEEEEeccCCc
Confidence 333334567888888899999876322 2344 5578999999999999999999999887654
No 372
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=26.65 E-value=44 Score=28.81 Aligned_cols=56 Identities=21% Similarity=0.280 Sum_probs=39.9
Q ss_pred CCcccCCcccccccccCCcchhhhhhhhcCcchHHHHHHHHHhhccCHHHHHHHHH
Q 019395 18 SSWDDSDPSVFKLNIVSTLRGEYQITNGFGPDKAPQVLQDHWDSYITDEDFKFLSS 73 (341)
Q Consensus 18 ~~~~~~~p~~f~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~e~d~~~i~~ 73 (341)
++|++..|.+|.....+........+.+.|...+...++++|..-++.++.-.++-
T Consensus 137 ~G~D~~gp~Ly~vd~~G~~~~~~~~a~G~~~~~~~~~L~~~~~~~ls~eeai~l~~ 192 (213)
T cd03753 137 AGVDENGPQLFHTDPSGTFTRCDAKAIGSGSEGAQSSLQEKYHKDMTLEEAEKLAL 192 (213)
T ss_pred EEEcCCCCEEEEECCCCCeecccEEEECCCcHHHHHHHHhhccCCCCHHHHHHHHH
Confidence 56666789999865544444333456777788899999999988888777766654
No 373
>COG5483 Uncharacterized conserved protein [Function unknown]
Probab=26.59 E-value=1e+02 Score=27.06 Aligned_cols=26 Identities=31% Similarity=0.447 Sum_probs=22.5
Q ss_pred HHHHHHHHHHcCCeEEEecCCCCCCC
Q 019395 105 LDNAFDWAEKYGVKVIVDLHAAPGSQ 130 (341)
Q Consensus 105 ld~~i~~a~~~gi~vildlh~~~g~~ 130 (341)
+..+++..++.|-+|+||.-.+|-|+
T Consensus 13 l~~~~d~l~~lgsrvmIdvrrfprSq 38 (289)
T COG5483 13 LLYTIDKLHELGSRVMIDVRRFPRSQ 38 (289)
T ss_pred HHHHHHHHHhhCceEEEEEeeccccc
Confidence 55677888889999999999999876
No 374
>PLN02692 alpha-galactosidase
Probab=26.59 E-value=6e+02 Score=24.62 Aligned_cols=131 Identities=15% Similarity=0.085 Sum_probs=65.6
Q ss_pred cCHHHHHHH---------HHCCCCEEEcCcccccccCCCCCC-CcccchH-HHHHHHHHHHHHcCCeEEEecCCCCCCCC
Q 019395 63 ITDEDFKFL---------SSNGINAVRIPVGWWIANDPTPPK-PFVGGSS-KVLDNAFDWAEKYGVKVIVDLHAAPGSQN 131 (341)
Q Consensus 63 ~~e~d~~~i---------~~~G~N~VRlpi~~~~~~~~~~~~-~~~~~~l-~~ld~~i~~a~~~gi~vildlh~~~g~~~ 131 (341)
|+|+.+..+ +++|++.|=|--.|+....+..+. ..++..+ .-+..+.+.+++.||+ +.+|..+|...
T Consensus 70 i~E~~i~~~ad~~~~~gl~~~Gy~yv~iDDgW~~~~rd~~G~~~~d~~kFP~G~k~ladyiH~~GLK--fGIy~d~G~~t 147 (412)
T PLN02692 70 IDEKMIKETADALVSTGLSKLGYTYVNIDDCWAEIARDEKGNLVPKKSTFPSGIKALADYVHSKGLK--LGIYSDAGYFT 147 (412)
T ss_pred cCHHHHHHHHHHHHhccchhcCcEEEEEcCCcCCCCCCCCCCeeeChhhcCCcHHHHHHHHHHCCCc--eEEEecCCccc
Confidence 566655554 456999999888885332221111 0011112 2378888999999998 45565555321
Q ss_pred CCCCCCCCCCccCCchhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCceEEE
Q 019395 132 GNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIM 211 (341)
Q Consensus 132 ~~~~~g~~~~~~~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~v~~ 211 (341)
++. +. +..+.+...-.+.+|+- +.+-| =+|-.+.+.. ....-|..+.+||++.+ ++|++
T Consensus 148 ----C~~--~~----pGS~g~e~~DA~~fA~W--GvDyl-K~D~C~~~~~------~~~~~y~~m~~AL~~tG--RpI~~ 206 (412)
T PLN02692 148 ----CSK--TM----PGSLGHEEQDAKTFASW--GIDYL-KYDNCNNDGS------KPTVRYPVMTRALMKAG--RPIFF 206 (412)
T ss_pred ----cCC--CC----CCchHHHHHHHHHHHhc--CCCEE-eccccCCCCc------chhHHHHHHHHHHHHhC--CCeEE
Confidence 110 00 12233333333334331 11112 2333333321 12345788889998876 45666
Q ss_pred e-CCCC
Q 019395 212 S-NRLG 216 (341)
Q Consensus 212 ~-~~~~ 216 (341)
+ ..|+
T Consensus 207 SlC~wg 212 (412)
T PLN02692 207 SLCEWG 212 (412)
T ss_pred EecCCC
Confidence 5 3343
No 375
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=26.52 E-value=2.4e+02 Score=22.96 Aligned_cols=49 Identities=8% Similarity=0.127 Sum_probs=31.8
Q ss_pred CceeEEEeecCCCCCC---CChHHHHHHHHHHHHHHHhcCCCceEEEeCCCC
Q 019395 168 PSLAAIELINEPLAPG---VALDTLKSYYKAGYDAVRKYTSTAYVIMSNRLG 216 (341)
Q Consensus 168 ~~v~~~el~NEP~~~~---~~~~~~~~~~~~~~~aIR~~~p~~~v~~~~~~~ 216 (341)
-.|+.+|+-.--.... .....+..+.+.+...|++.+.+.+++++-++|
T Consensus 25 ~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lvG~S~G 76 (228)
T PF12697_consen 25 YRVIAFDLPGHGRSDPPPDYSPYSIEDYAEDLAELLDALGIKKVILVGHSMG 76 (228)
T ss_dssp SEEEEEECTTSTTSSSHSSGSGGSHHHHHHHHHHHHHHTTTSSEEEEEETHH
T ss_pred CEEEEEecCCccccccccccCCcchhhhhhhhhhcccccccccccccccccc
Confidence 3577677664322211 123567888889999999998777777774443
No 376
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=26.48 E-value=2.1e+02 Score=28.35 Aligned_cols=59 Identities=19% Similarity=0.114 Sum_probs=40.2
Q ss_pred cCHHHHHHHHHCCCCEEEcCcccccc-cCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEe
Q 019395 63 ITDEDFKFLSSNGINAVRIPVGWWIA-NDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVD 122 (341)
Q Consensus 63 ~~e~d~~~i~~~G~N~VRlpi~~~~~-~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vild 122 (341)
.|.+..+.+.++|++.||+.|+--.. ....-. ..-...+..+.++.+.|+++|+.||-|
T Consensus 277 ~t~~~a~~l~~aGad~v~vgig~gsictt~~~~-~~~~p~~~av~~~~~~~~~~~~~via~ 336 (479)
T PRK07807 277 VTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMT-GVGRPQFSAVLECAAAARELGAHVWAD 336 (479)
T ss_pred CCHHHHHHHHHcCCCEEEECccCCccccccccc-CCchhHHHHHHHHHHHHHhcCCcEEec
Confidence 37888889999999999998753100 100000 011236788888888888999999986
No 377
>PF05013 FGase: N-formylglutamate amidohydrolase; InterPro: IPR007709 Formylglutamate amidohydrolase (FGase) catalyzes the terminal reaction in the five-step pathway for histidine utilization in Pseudomonas putida. By this action, N-formyl-L-glutamate (FG) is hydrolyzed to produce L-glutamate plus formate [].; PDB: 2ODF_G 2Q7S_A.
Probab=26.37 E-value=1.3e+02 Score=26.05 Aligned_cols=28 Identities=18% Similarity=0.445 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHH-cCCeEEEecCCCCCC
Q 019395 102 SKVLDNAFDWAEK-YGVKVIVDLHAAPGS 129 (341)
Q Consensus 102 l~~ld~~i~~a~~-~gi~vildlh~~~g~ 129 (341)
-+.|.++|+...+ +|--++||+|.++..
T Consensus 116 h~~l~~~l~~~~~~~g~~illd~HS~~~~ 144 (222)
T PF05013_consen 116 HRALAALLERLRARFGKVILLDCHSMPPV 144 (222)
T ss_dssp HHHHHHHHHHHHHCCS-EEEEEEEEE-TC
T ss_pred HHHHHHHHHHHHHhcCceEEEEeccCCCc
Confidence 4566667766544 677889999998654
No 378
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=26.36 E-value=8.8e+02 Score=26.49 Aligned_cols=59 Identities=14% Similarity=0.022 Sum_probs=35.4
Q ss_pred cCHHHHHH----HHHCC--CCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecC
Q 019395 63 ITDEDFKF----LSSNG--INAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 124 (341)
Q Consensus 63 ~~e~d~~~----i~~~G--~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh 124 (341)
-+++++.. +++.| +++|=+.+.|+ +....-.++++.+.....+++..++.|+++++-++
T Consensus 198 ~sq~eV~eva~~fre~~IP~DvIwlDidYm---~g~~~FTwD~~rFPdP~~mv~~Lh~~G~kvv~iid 262 (978)
T PLN02763 198 ESAKRVAEIARTFREKKIPCDVVWMDIDYM---DGFRCFTFDKERFPDPKGLADDLHSIGFKAIWMLD 262 (978)
T ss_pred CCHHHHHHHHHHHHHcCCCceEEEEehhhh---cCCCceeECcccCCCHHHHHHHHHHCCCEEEEEEc
Confidence 34554444 45565 34455555543 22122244555566678999999999999877654
No 379
>TIGR00629 uvde UV damage endonuclease UvdE. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=26.27 E-value=48 Score=30.65 Aligned_cols=23 Identities=13% Similarity=0.401 Sum_probs=20.8
Q ss_pred HHHHHHHHHHcCCeEEEecCCCC
Q 019395 105 LDNAFDWAEKYGVKVIVDLHAAP 127 (341)
Q Consensus 105 ld~~i~~a~~~gi~vildlh~~~ 127 (341)
+++++..|++.||-+++|+||.-
T Consensus 201 l~evL~lc~e~~iP~v~D~hHh~ 223 (312)
T TIGR00629 201 VEDLLPVCEELNIPFVLDFHHHN 223 (312)
T ss_pred HHHHHHHHHhcCCCEEEEhHHhh
Confidence 78899999999999999999863
No 380
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=26.20 E-value=2.2e+02 Score=27.65 Aligned_cols=64 Identities=9% Similarity=0.319 Sum_probs=40.3
Q ss_pred ccCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcc-cchHHHHHHHHHHHHHcCCeEEEecCCCCC
Q 019395 62 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV-GGSSKVLDNAFDWAEKYGVKVIVDLHAAPG 128 (341)
Q Consensus 62 ~~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~-~~~l~~ld~~i~~a~~~gi~vildlh~~~g 128 (341)
-++++|+++|.+.++.=+.++++ ..+|.-...+. ...-..+-+.+++..++||.+...+--.||
T Consensus 125 Nl~~~d~~RI~~~~lspl~iSVh---at~p~lR~~ll~n~~a~~il~~l~~l~~~~I~~h~qiVlcPG 189 (433)
T TIGR03279 125 NLPPAEWQRIEQLRLSPLYVSVH---ATEPSLRARLLKNPRAGLILEQLKWFQERRLQLHAQVVVCPG 189 (433)
T ss_pred CCCHHHHHHHHHcCCCCEEEEEe---cCCHHHHHHHhCCCCHHHHHHHHHHHHHcCCeEEEEEEEcCC
Confidence 35899999999999999998884 23332100000 112355666777777888766555555554
No 381
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=26.19 E-value=40 Score=30.60 Aligned_cols=22 Identities=23% Similarity=0.555 Sum_probs=18.6
Q ss_pred HHHHHHHHHHcCCeEEEecCCC
Q 019395 105 LDNAFDWAEKYGVKVIVDLHAA 126 (341)
Q Consensus 105 ld~~i~~a~~~gi~vildlh~~ 126 (341)
+++++..|++.||-+|+|.||.
T Consensus 192 ~~d~L~ic~~~giP~VfD~hHh 213 (275)
T PF03851_consen 192 VEDVLPICEKLGIPMVFDYHHH 213 (275)
T ss_dssp HHHHHHHHHHHT--EEEEHHHH
T ss_pred HHHHHHHHHHhCCCEEEEhHHh
Confidence 7889999999999999999986
No 382
>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]
Probab=26.09 E-value=2.2e+02 Score=26.36 Aligned_cols=57 Identities=14% Similarity=0.093 Sum_probs=36.5
Q ss_pred HHHHHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCceEEEeCCCC
Q 019395 157 IDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRLG 216 (341)
Q Consensus 157 ~~~la~~y~~~~~v~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~v~~~~~~~ 216 (341)
|..+.+..+++..+++++=.---.+ .+.-.-.=.+++++.+|+++|+.+++|.++++
T Consensus 155 ~~~v~~~i~~~tkli~IQRS~GY~~---RpS~~I~eI~~~i~~vk~inpn~ivFVDNCYG 211 (416)
T COG4100 155 IQAVKTAISDRTKLIGIQRSKGYAW---RPSLSIAEIEEMITFVKEINPNVIVFVDNCYG 211 (416)
T ss_pred HHHHHHhcCccceEEEEEeccCcCC---CCcccHHHHHHHHHHHHhcCCCEEEEEeccch
Confidence 4556666667777777653221111 11222334568899999999999999987664
No 383
>TIGR02536 eut_hyp ethanolamine utilization protein. This family of proteins is found in operons for the polyhedral organelle-based degradation of ethanolamine. This family is not found in proteobacterial species which otherwise have the same suite of genes in the eut operon. Proteobacteria have two genes that are not found in non-proteobacteria which may complement this genes function, a phosphotransacetylase (pfam01515) and the EutJ protein (TIGR02529) of unknown function.
Probab=25.96 E-value=1.5e+02 Score=25.65 Aligned_cols=47 Identities=23% Similarity=0.378 Sum_probs=35.2
Q ss_pred HHhhccCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEE
Q 019395 58 HWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIV 121 (341)
Q Consensus 58 ~~~~~~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vil 121 (341)
.....||++|+..+...|...++++=. ....| -+-+.|+.+||.+++
T Consensus 160 ~~KklITe~dl~~l~~~g~~~i~v~k~--sIITp---------------LA~Dyak~~~I~I~~ 206 (207)
T TIGR02536 160 NKKKLITEKDLKKLTKNGVSEIILSKK--SILTP---------------LAKDYAKEKNINIKL 206 (207)
T ss_pred cccceecHHHHHHHHhCCCcEEEeCCC--CCcch---------------hHHHHHHHcCCeEee
Confidence 344679999999999999999998643 22222 234788999999875
No 384
>PF01359 Transposase_1: Transposase (partial DDE domain); InterPro: IPR001888 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element. Transposases have been grouped into various families [, , ]. This family includes the mariner transposase []. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 3HOT_B 3HOS_A 3K9K_B 3F2K_B 3K9J_B 2F7T_A.
Probab=25.96 E-value=1.8e+02 Score=21.00 Aligned_cols=38 Identities=11% Similarity=0.034 Sum_probs=29.1
Q ss_pred CCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCC
Q 019395 167 RPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTST 206 (341)
Q Consensus 167 ~~~v~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~ 206 (341)
...|+.+|+++... .++.+.+.+-++++.++|++.-|.
T Consensus 39 ~~Gvi~~e~L~~~~--TIts~~Y~~ql~~l~~~l~~krp~ 76 (81)
T PF01359_consen 39 AKGVIHYELLPPGK--TITSEYYCQQLDKLKQALREKRPE 76 (81)
T ss_dssp TTEEEEEEEESTT-----SHHHHHHHHHHHHHHHHHHTCC
T ss_pred ccCcEeeeeCCCCc--cccHHHHHHHHHHHHHHHHHhChH
Confidence 34688899998876 477888888899999999987774
No 385
>PF08915 tRNA-Thr_ED: Archaea-specific editing domain of threonyl-tRNA synthetase; InterPro: IPR015011 Archaea-specific editing domain of threonyl-tRNA synthetase, with marked structural similarity to D-amino acids deacylases found in eubacteria and eukaryotes. This domain can bind D-amino acids, and ensures high fidelity during translation. It is especially responsible for removing incorrectly attached serine from tRNA-Thr. The domain forms a fold that can be defined as two layers of beta-sheets (a three-stranded sheet and a five-stranded sheet), with two alpha-helices located adjacent to the five-stranded sheet []. ; GO: 0004829 threonine-tRNA ligase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0005737 cytoplasm; PDB: 3PD4_B 3PD3_A 2HL0_A 2HL1_A 2HKZ_A 3PD5_B 2HL2_A 3PD2_B 1Y2Q_A.
Probab=25.79 E-value=73 Score=25.64 Aligned_cols=19 Identities=37% Similarity=0.816 Sum_probs=13.5
Q ss_pred HHHHHCCCCEEEcCccccc
Q 019395 69 KFLSSNGINAVRIPVGWWI 87 (341)
Q Consensus 69 ~~i~~~G~N~VRlpi~~~~ 87 (341)
+.|++.|+++.|-|++|.-
T Consensus 102 ~~L~~~g~eV~raPFGwyK 120 (138)
T PF08915_consen 102 ERLKSRGFEVYRAPFGWYK 120 (138)
T ss_dssp HHHHHTT-EEEE--TTEEE
T ss_pred HHHHhCCCeEEEeCCccce
Confidence 5678999999999999953
No 386
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=25.73 E-value=6.1e+02 Score=24.44 Aligned_cols=58 Identities=14% Similarity=0.166 Sum_probs=33.8
Q ss_pred cCHHHHHHHHHCC--CCEEEcCcccccccCCCCCCCcc-cchHHHHHHHHHHHHHc--CCeEEEec
Q 019395 63 ITDEDFKFLSSNG--INAVRIPVGWWIANDPTPPKPFV-GGSSKVLDNAFDWAEKY--GVKVIVDL 123 (341)
Q Consensus 63 ~~e~d~~~i~~~G--~N~VRlpi~~~~~~~~~~~~~~~-~~~l~~ld~~i~~a~~~--gi~vildl 123 (341)
++++.++.|++.| ++.+-|++-- . .+.--..+. ....+.+.++++.++++ ++.+..|+
T Consensus 230 ~~~ell~~~~~~~~~~~~l~iglES--~-s~~vLk~m~k~~~~~~~~~~i~~l~~~~~~i~i~~~~ 292 (430)
T TIGR01125 230 LTDDVIDLMAEGPKVLPYLDIPLQH--A-SDRILKLMRRPGSGEQQLDFIERLREKCPDAVLRTTF 292 (430)
T ss_pred CCHHHHHHHhhCCcccCceEeCCCC--C-CHHHHhhCCCCCCHHHHHHHHHHHHHhCCCCeEeEEE
Confidence 6788889998885 7777776521 1 110000000 11357788899999998 55544443
No 387
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=25.58 E-value=1.4e+02 Score=27.14 Aligned_cols=63 Identities=19% Similarity=0.296 Sum_probs=47.2
Q ss_pred HHhhccCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCCCC
Q 019395 58 HWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQ 130 (341)
Q Consensus 58 ~~~~~~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~ 130 (341)
|.+.--+.+++...-+.||++|=+--+ .-|| ++.++.-.++++.|+.+|+.|=-.|-+..|..
T Consensus 78 HLDHg~~~e~i~~ai~~GFtSVM~DgS---------~lp~-eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e 140 (282)
T TIGR01858 78 HLDHHESLDDIRQKVHAGVRSAMIDGS---------HFPF-AQNVKLVKEVVDFCHRQDCSVEAELGRLGGVE 140 (282)
T ss_pred ECCCCCCHHHHHHHHHcCCCEEeecCC---------CCCH-HHHHHHHHHHHHHHHHcCCeEEEEEEecCCcc
Confidence 344444678888888899999876322 2344 55789999999999999999998888876543
No 388
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=25.56 E-value=42 Score=29.31 Aligned_cols=54 Identities=15% Similarity=0.260 Sum_probs=38.2
Q ss_pred CCcccCCcccccccccCCcchhhhhhhhcCcchHHHHHHHHHhhccCHHHHHHH
Q 019395 18 SSWDDSDPSVFKLNIVSTLRGEYQITNGFGPDKAPQVLQDHWDSYITDEDFKFL 71 (341)
Q Consensus 18 ~~~~~~~p~~f~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~e~d~~~i 71 (341)
++|++..|.+|.--..+........+-+.|...+...|+++|..-++.++...+
T Consensus 132 ~G~D~~g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~eeai~l 185 (227)
T cd03750 132 AGWDEGGPYLYQVDPSGSYFTWKATAIGKNYSNAKTFLEKRYNEDLELEDAIHT 185 (227)
T ss_pred EEEeCCCCEEEEECCCCCEEeeeEEEECCCCHHHHHHHHhhccCCCCHHHHHHH
Confidence 566666799998654444443344567778888899999999887776665554
No 389
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=25.52 E-value=1.2e+02 Score=27.27 Aligned_cols=48 Identities=13% Similarity=0.025 Sum_probs=36.5
Q ss_pred HHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEE
Q 019395 66 EDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIV 121 (341)
Q Consensus 66 ~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vil 121 (341)
..++..-++|..+|=..|.+- .+...+.++.+-++++.|.++||-+|+
T Consensus 101 ~~ve~ai~lgadAV~~~Vy~G--------se~e~~~i~~~~~v~~~a~~~Gmp~v~ 148 (265)
T COG1830 101 ATVEDAIRLGADAVGATVYVG--------SETEREMIENISQVVEDAHELGMPLVA 148 (265)
T ss_pred eeHHHHHhCCCcEEEEEEecC--------CcchHHHHHHHHHHHHHHHHcCCceEE
Confidence 345555688999988877541 223356899999999999999999887
No 390
>PRK10812 putative DNAse; Provisional
Probab=25.40 E-value=4.9e+02 Score=23.27 Aligned_cols=44 Identities=9% Similarity=0.012 Sum_probs=26.8
Q ss_pred ceEEEeecCCCCCCCCCHHHHHHHHHHHHHHHccCCCcEEEecc
Q 019395 277 LTFVGEWTCEWNVKDASKQDYQRFANAQLDVYGRATFGWAYWAH 320 (341)
Q Consensus 277 pv~vGE~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~W~~ 320 (341)
.+-|||-|..+.......+...++++.|+++-.+.+..-...+-
T Consensus 89 vvaIGEiGLD~~~~~~~~~~Q~~vf~~ql~lA~e~~~Pv~iH~r 132 (265)
T PRK10812 89 VVAMGETGLDYYYTPETKVRQQESFRHHIQIGRELNKPVIVHTR 132 (265)
T ss_pred EEEEEeeecCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEee
Confidence 47899999876432234566667777776665544555555543
No 391
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=25.34 E-value=1.6e+02 Score=25.23 Aligned_cols=22 Identities=18% Similarity=0.542 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHcCCeEEEe
Q 019395 101 SSKVLDNAFDWAEKYGVKVIVD 122 (341)
Q Consensus 101 ~l~~ld~~i~~a~~~gi~vild 122 (341)
....++.++..|++.|+.||++
T Consensus 188 ~~~~l~~l~~~~~~~~~~via~ 209 (241)
T smart00052 188 DEAIVQSIIELAQKLGLQVVAE 209 (241)
T ss_pred HHHHHHHHHHHHHHCCCeEEEe
Confidence 4577889999999999999985
No 392
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=25.33 E-value=83 Score=31.45 Aligned_cols=60 Identities=17% Similarity=0.226 Sum_probs=40.9
Q ss_pred CHHHHHHHHHCCCCEEEcCcccccc-cCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecC
Q 019395 64 TDEDFKFLSSNGINAVRIPVGWWIA-NDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 124 (341)
Q Consensus 64 ~e~d~~~i~~~G~N~VRlpi~~~~~-~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh 124 (341)
.+.+++.+++.|...||+.++-... ....- ..-.++.++.+.+.|+.|+++|+.|.++.-
T Consensus 87 ~d~~~e~~~~~g~~~i~i~~~~Sd~h~~~~l-~~s~~e~l~~~~~~v~~ak~~G~~v~~~~e 147 (524)
T PRK12344 87 EDPNLQALLDAGTPVVTIFGKSWDLHVTEAL-RTTLEENLAMIRDSVAYLKAHGREVIFDAE 147 (524)
T ss_pred cHHHHHHHHhCCCCEEEEEECCCHHHHHHHc-CCCHHHHHHHHHHHHHHHHHcCCeEEEccc
Confidence 3678889999999999996642111 00000 011245788999999999999999987543
No 393
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=25.32 E-value=1e+02 Score=29.34 Aligned_cols=51 Identities=25% Similarity=0.296 Sum_probs=37.1
Q ss_pred HHHHHHHHHC-CCCEEEcCcccccccCCCC--CCCcccchHHHHHHHHHHHHHcCCeEEEec
Q 019395 65 DEDFKFLSSN-GINAVRIPVGWWIANDPTP--PKPFVGGSSKVLDNAFDWAEKYGVKVIVDL 123 (341)
Q Consensus 65 e~d~~~i~~~-G~N~VRlpi~~~~~~~~~~--~~~~~~~~l~~ld~~i~~a~~~gi~vildl 123 (341)
|-|++.+.++ -=|+|=|-| .+|.+ ++.|+ -+.|+++.+.|+++||-||-|=
T Consensus 186 eIDL~~veal~DENT~Aivv-----iNP~NPcGnVys---~~HL~kiae~A~klgi~vIaDE 239 (447)
T KOG0259|consen 186 EIDLDGVEALADENTVAIVV-----INPNNPCGNVYS---EDHLKKIAETAKKLGIMVIADE 239 (447)
T ss_pred eechHHHHHhhccCeeEEEE-----eCCCCCCccccc---HHHHHHHHHHHHHhCCeEEehh
Confidence 6777777665 678887733 44433 23454 5889999999999999999873
No 394
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=25.03 E-value=1.1e+02 Score=29.42 Aligned_cols=30 Identities=23% Similarity=0.411 Sum_probs=25.0
Q ss_pred cccchHHHHHHHHHHHHHcCCeEEEecCCC
Q 019395 97 FVGGSSKVLDNAFDWAEKYGVKVIVDLHAA 126 (341)
Q Consensus 97 ~~~~~l~~ld~~i~~a~~~gi~vildlh~~ 126 (341)
|..+.|.....+|++|++.|+.|++|.-+-
T Consensus 152 Y~KG~L~~~q~~I~~ar~~~~pVLvDPKg~ 181 (467)
T COG2870 152 YAKGVLTNVQKMIDLAREAGIPVLVDPKGK 181 (467)
T ss_pred cccccchhHHHHHHHHHHcCCcEEECCCCc
Confidence 445667789999999999999999996543
No 395
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=24.75 E-value=2.6e+02 Score=27.76 Aligned_cols=70 Identities=19% Similarity=0.208 Sum_probs=44.8
Q ss_pred HHHHHHHHh-------hccCHHHHHHHHHCCCCEEEcCccccc-ccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEe
Q 019395 52 PQVLQDHWD-------SYITDEDFKFLSSNGINAVRIPVGWWI-ANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVD 122 (341)
Q Consensus 52 ~~~~~~~~~-------~~~~e~d~~~i~~~G~N~VRlpi~~~~-~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vild 122 (341)
.+.+.+++. +-.|.++.+.+.++|++.|++.++--. .......+ .--..+..+.++.+.|+++|+.||.|
T Consensus 273 i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~-~g~p~~~ai~~~~~~~~~~~v~vIad 350 (495)
T PTZ00314 273 IKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGSICITQEVCA-VGRPQASAVYHVARYARERGVPCIAD 350 (495)
T ss_pred HHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEEECCcCCcccccchhcc-CCCChHHHHHHHHHHHhhcCCeEEec
Confidence 444556653 345789999999999999998764210 00000000 00124677788888999999998885
No 396
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=24.62 E-value=5.5e+02 Score=23.58 Aligned_cols=62 Identities=18% Similarity=0.121 Sum_probs=37.8
Q ss_pred HHHHHHHHHCCC--CEEEcCcccccccC-CCC--CCCcccchHHHHHHHHHHHHHcCCeEEEecCCC
Q 019395 65 DEDFKFLSSNGI--NAVRIPVGWWIAND-PTP--PKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA 126 (341)
Q Consensus 65 e~d~~~i~~~G~--N~VRlpi~~~~~~~-~~~--~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~ 126 (341)
.+-++.+++.|+ .+|=|.+.|..... ... .-.++++.+...+++|+.++++|++|++-+|-.
T Consensus 27 ~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~ 93 (317)
T cd06598 27 DDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPF 93 (317)
T ss_pred HHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCc
Confidence 455556677764 45555555532110 000 113445566677899999999999999987643
No 397
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=24.56 E-value=2.3e+02 Score=25.50 Aligned_cols=126 Identities=16% Similarity=0.245 Sum_probs=66.0
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCCccC
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQE 144 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~~ 144 (341)
|+-++.+++.|++.|=+|- .| .+..+++++.|+++||..|+=+--.
T Consensus 109 e~F~~~~~~aGvdgviipD-----------LP-----~ee~~~~~~~~~~~gi~~I~lv~Pt------------------ 154 (263)
T CHL00200 109 NKFIKKISQAGVKGLIIPD-----------LP-----YEESDYLISVCNLYNIELILLIAPT------------------ 154 (263)
T ss_pred HHHHHHHHHcCCeEEEecC-----------CC-----HHHHHHHHHHHHHcCCCEEEEECCC------------------
Confidence 4455566666666655431 11 2446677777777777766532211
Q ss_pred CchhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCC-Chhhh
Q 019395 145 WGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRLGPA-DHKEL 223 (341)
Q Consensus 145 w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~v~~~~~~~~~-~~~~~ 223 (341)
... +.++.+++.=.+ .+ |-+-+-... +.. ..+..-..+.++.||+. .+.+|.++-+-.+. +...+
T Consensus 155 ---T~~----eri~~i~~~a~g---FI-Y~vS~~GvT-G~~-~~~~~~~~~~i~~ir~~-t~~Pi~vGFGI~~~e~~~~~ 220 (263)
T CHL00200 155 ---SSK----SRIQKIARAAPG---CI-YLVSTTGVT-GLK-TELDKKLKKLIETIKKM-TNKPIILGFGISTSEQIKQI 220 (263)
T ss_pred ---CCH----HHHHHHHHhCCC---cE-EEEcCCCCC-CCC-ccccHHHHHHHHHHHHh-cCCCEEEECCcCCHHHHHHH
Confidence 011 234444443222 22 323333332 332 44555567888888885 46788888766543 34444
Q ss_pred hhccCCCCcEEEEeeec
Q 019395 224 LSFASGLSRVVIDVHYY 240 (341)
Q Consensus 224 ~~~~~~~~~~v~~~H~Y 240 (341)
... +.+-+|+....-
T Consensus 221 ~~~--GADGvVVGSalv 235 (263)
T CHL00200 221 KGW--NINGIVIGSACV 235 (263)
T ss_pred Hhc--CCCEEEECHHHH
Confidence 432 245566666543
No 398
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=24.49 E-value=1.1e+02 Score=27.51 Aligned_cols=65 Identities=15% Similarity=0.249 Sum_probs=42.8
Q ss_pred cCHHHHHHHHHCCCCEEEcCcccccccC-CCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCC
Q 019395 63 ITDEDFKFLSSNGINAVRIPVGWWIAND-PTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAP 127 (341)
Q Consensus 63 ~~e~d~~~i~~~G~N~VRlpi~~~~~~~-~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~ 127 (341)
+++++.+.|+++|.+.+=+++++-.... ......-.+++.+.++++.+.|++.+=.||+=.|+.|
T Consensus 158 f~~e~A~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~dii~l~hGGP 223 (268)
T PF09370_consen 158 FNEEQARAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVNPDIIVLCHGGP 223 (268)
T ss_dssp -SHHHHHHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHCC-TT-EEEEECTT
T ss_pred cCHHHHHHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 4899999999999999999887632111 0111122356889999999999999999999889765
No 399
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=24.39 E-value=2.2e+02 Score=25.45 Aligned_cols=48 Identities=19% Similarity=0.282 Sum_probs=30.1
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCceEEEe
Q 019395 160 LAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMS 212 (341)
Q Consensus 160 la~~y~~~~~v~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~v~~~ 212 (341)
||+.+..+|.++ |+-||-+ ..+.-.=..+.+.+.+..++... +.|+|.
T Consensus 141 iARAL~~~P~lL---LlDEPFg-ALDalTR~~lq~~l~~lw~~~~~-TvllVT 188 (248)
T COG1116 141 IARALATRPKLL---LLDEPFG-ALDALTREELQDELLRLWEETRK-TVLLVT 188 (248)
T ss_pred HHHHHhcCCCEE---EEcCCcc-hhhHHHHHHHHHHHHHHHHhhCC-EEEEEe
Confidence 555667789988 9999986 44443444555566666666554 444443
No 400
>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed
Probab=24.38 E-value=80 Score=28.72 Aligned_cols=27 Identities=22% Similarity=0.318 Sum_probs=23.4
Q ss_pred cchHHHHHHHHHHHHHcCCeEEEecCC
Q 019395 99 GGSSKVLDNAFDWAEKYGVKVIVDLHA 125 (341)
Q Consensus 99 ~~~l~~ld~~i~~a~~~gi~vildlh~ 125 (341)
..++..|.++++.+++.|+.||+|+=.
T Consensus 69 ~~G~~~l~~~i~~l~~~g~~VilD~K~ 95 (278)
T PRK00125 69 AEGLAQLERTIAYLREAGVLVIADAKR 95 (278)
T ss_pred chhhhHHHHHHHHHHHCCCcEEEEeec
Confidence 346889999999999999999999843
No 401
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=24.23 E-value=2.5e+02 Score=25.18 Aligned_cols=47 Identities=28% Similarity=0.496 Sum_probs=32.3
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCceEEEe
Q 019395 160 LAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMS 212 (341)
Q Consensus 160 la~~y~~~~~v~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~v~~~ 212 (341)
||+.+..+|.++ ++-||.. +.+...-..+| ++++.+|+. ...+++++
T Consensus 150 lARAL~~~p~ll---lLDEP~~-gvD~~~~~~i~-~lL~~l~~e-g~tIl~vt 196 (254)
T COG1121 150 LARALAQNPDLL---LLDEPFT-GVDVAGQKEIY-DLLKELRQE-GKTVLMVT 196 (254)
T ss_pred HHHHhccCCCEE---EecCCcc-cCCHHHHHHHH-HHHHHHHHC-CCEEEEEe
Confidence 566677889988 8999996 66665555555 566777777 44445544
No 402
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=24.18 E-value=2.4e+02 Score=28.49 Aligned_cols=145 Identities=14% Similarity=0.223 Sum_probs=72.2
Q ss_pred HHHHHHHHHCCCCEEEcCccc-ccccCCCCCCC------c-----ccchHHHHHHHHHHHHHcCCeEEEecCCCCCC---
Q 019395 65 DEDFKFLSSNGINAVRIPVGW-WIANDPTPPKP------F-----VGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGS--- 129 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~-~~~~~~~~~~~------~-----~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~--- 129 (341)
++.++.|+..-+|.|-+ ..| |....|-+.+. + .+-..+.+++.|+.|+++||+++.-.-.+...
T Consensus 121 ~~~i~~L~~yHIN~~QF-YDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiyaa~~~~ 199 (559)
T PF13199_consen 121 EAEIDQLNRYHINGLQF-YDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYNMIYAANNNY 199 (559)
T ss_dssp HHHHHHHHHTT--EEEE-TS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEESSEEETT-
T ss_pred HHHHHHHHhhCcCeEEE-EeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhHhhhccccCc
Confidence 89999999999999986 333 22333322211 1 12258999999999999999999843222000
Q ss_pred ----CCC----C-CCCCC-CC--Cc-cCC-----c-----hhHHHHHHHHHHHHHHHhCCCCceeEEE----eecCCCCC
Q 019395 130 ----QNG----N-EHSAT-RD--GF-QEW-----G-----DSNVADTVAVIDFLAARYANRPSLAAIE----LINEPLAP 182 (341)
Q Consensus 130 ----~~~----~-~~~g~-~~--~~-~~w-----~-----~~~~~~~~~~~~~la~~y~~~~~v~~~e----l~NEP~~~ 182 (341)
... + +.++. .. .. ..| . +.-++..++-.+.+.+.+ +.+.+. +| ..+.-...
T Consensus 200 ~~~gv~~eW~ly~d~~~~~~~~~~l~~~w~s~lyl~dP~N~~WQ~yI~~q~~~~~~~~-gFDG~h-lDq~G~~~~~~d~~ 277 (559)
T PF13199_consen 200 EEDGVSPEWGLYKDDSHSNQDTYDLPDGWPSDLYLMDPGNPEWQNYIINQMNKAIQNF-GFDGWH-LDQLGNRGTVYDYD 277 (559)
T ss_dssp -S--SS-GGBEEESSSBTSB-EEEETT-E--EEEEB-TT-HHHHHHHHHHHHHHHHHH-T--EEE-EE-S--EEEEGGTT
T ss_pred ccccCCchhhhhhccCCCccceeecCcccccceEEecCCCHHHHHHHHHHHHHHHHcc-CCceEe-eeccCCCCccccCC
Confidence 000 0 00000 00 00 011 1 223344444444444444 222222 22 22221111
Q ss_pred CCChHHHHHHHHHHHHHHHhcCCCceEEEe
Q 019395 183 GVALDTLKSYYKAGYDAVRKYTSTAYVIMS 212 (341)
Q Consensus 183 ~~~~~~~~~~~~~~~~aIR~~~p~~~v~~~ 212 (341)
+.....+..-+...++++++..|+..+++.
T Consensus 278 G~~i~~l~~~y~~Fi~~~K~~~~~k~lv~N 307 (559)
T PF13199_consen 278 GNKIYDLSDGYASFINAMKEALPDKYLVFN 307 (559)
T ss_dssp ---GGECHHHHHHHHHHHHHHSTTSEEEEB
T ss_pred CCCchhhHHHHHHHHHHHHHhCCCCceeee
Confidence 222226788888999999999999888876
No 403
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=24.13 E-value=5.2e+02 Score=23.13 Aligned_cols=99 Identities=16% Similarity=0.253 Sum_probs=48.8
Q ss_pred HHHHHHHhcCCCceEEEeCCCCCCChhhhhhccCCCCcE--EEEeeecCCCCccccCccchhhhHHHHhhhhhhhhhhhc
Q 019395 195 AGYDAVRKYTSTAYVIMSNRLGPADHKELLSFASGLSRV--VIDVHYYNLFSNNFNGLNVQQNIDYVNNQRASDLGAVTT 272 (341)
Q Consensus 195 ~~~~aIR~~~p~~~v~~~~~~~~~~~~~~~~~~~~~~~~--v~~~H~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (341)
+++...++.+-..+++++.... +....+......+++ .+.+|+... ....+..++.+.. +..
T Consensus 21 ~vi~~a~~~gv~~~~~~g~~~~--~~~~~~~la~~y~~v~~~~G~HP~~~------~~~~~~~~~~l~~--------~~~ 84 (256)
T COG0084 21 EVIARAREAGVKKMVVVGTDLE--DFKRALELAEKYPNVYAAVGVHPLDA------DEHSEEDLEELEQ--------LAE 84 (256)
T ss_pred HHHHHHHHcCCcEEEEeecCHH--HHHHHHHHHHhCCCeEEEEeeCCCcc------ccccHHHHHHHHH--------HHh
Confidence 3566666666677777774322 112222222233444 467776641 1111223333332 222
Q ss_pred cCCCceEEEeecCCCCCCCC-CHHHHHHHHHHHHHHHc
Q 019395 273 SNGPLTFVGEWTCEWNVKDA-SKQDYQRFANAQLDVYG 309 (341)
Q Consensus 273 ~~~~pv~vGE~g~~~~~~~~-~~~~~~~~~~~~~~~~~ 309 (341)
...+-+-|||.|..+..... ..+....+++.|+++-.
T Consensus 85 ~~~~vvaIGEiGLDy~~~~~~~~~~Q~~~F~~ql~lA~ 122 (256)
T COG0084 85 HHPKVVAIGEIGLDYYWDKEPDKERQEEVFEAQLELAK 122 (256)
T ss_pred cCCCeEEEEecccCccccccccHHHHHHHHHHHHHHHH
Confidence 11234889999987643333 34455566666655443
No 404
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=24.12 E-value=1.4e+02 Score=23.13 Aligned_cols=47 Identities=11% Similarity=0.103 Sum_probs=32.4
Q ss_pred CCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCChhh
Q 019395 166 NRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNRLGPADHKE 222 (341)
Q Consensus 166 ~~~~v~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~v~~~~~~~~~~~~~ 222 (341)
..|.++++.++..- .. ...++++.||+..|+.+|++++...+..+..
T Consensus 38 ~~pdiv~~S~~~~~---------~~-~~~~~~~~ik~~~p~~~iv~GG~~~t~~p~~ 84 (127)
T cd02068 38 LKPDVVGISLMTSA---------IY-EALELAKIAKEVLPNVIVVVGGPHATFFPEE 84 (127)
T ss_pred cCCCEEEEeecccc---------HH-HHHHHHHHHHHHCCCCEEEECCcchhhCHHH
Confidence 56788888764331 11 4677888999999999999986554333333
No 405
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=24.09 E-value=2.9e+02 Score=25.98 Aligned_cols=59 Identities=17% Similarity=0.108 Sum_probs=41.2
Q ss_pred cCHHHHHHHHHCCCCEEEcCcccccc-cCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEe
Q 019395 63 ITDEDFKFLSSNGINAVRIPVGWWIA-NDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVD 122 (341)
Q Consensus 63 ~~e~d~~~i~~~G~N~VRlpi~~~~~-~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vild 122 (341)
.|.+-.+.|-++|.+.||+.|+--.. ......+. --.++..+.++-+.|+++|..||-|
T Consensus 160 ~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGv-G~PQltAV~~~a~~a~~~gvpiIAD 219 (346)
T PRK05096 160 VTGEMVEELILSGADIVKVGIGPGSVCTTRVKTGV-GYPQLSAVIECADAAHGLGGQIVSD 219 (346)
T ss_pred cCHHHHHHHHHcCCCEEEEcccCCccccCcccccc-ChhHHHHHHHHHHHHHHcCCCEEec
Confidence 38888999999999999998863111 11111110 1126888888889999999988876
No 406
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=24.02 E-value=2.4e+02 Score=25.83 Aligned_cols=58 Identities=19% Similarity=0.223 Sum_probs=34.3
Q ss_pred CHHHHHHHHHCCCCEEEcCcccccccCCCCCCCc-c-cchHHHHHHHHHHHHHcCCeEEEec
Q 019395 64 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF-V-GGSSKVLDNAFDWAEKYGVKVIVDL 123 (341)
Q Consensus 64 ~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~-~-~~~l~~ld~~i~~a~~~gi~vildl 123 (341)
+++.++.|+++|++.+- .++.....+... ..+ . ....+...++++.|++.||.+...+
T Consensus 106 ~~e~l~~LkeAGl~~i~-~~g~E~l~~~~~-~~i~~~~~t~~~~l~~i~~a~~~Gi~~~s~~ 165 (309)
T TIGR00423 106 IEEVLKRLKKAGLDSMP-GTGAEILDDSVR-RKICPNKLSSDEWLEVIKTAHRLGIPTTATM 165 (309)
T ss_pred HHHHHHHHHHcCCCcCC-CCcchhcCHHHH-HhhCCCCCCHHHHHHHHHHHHHcCCCceeeE
Confidence 47889999999998663 123221111000 001 0 1134555689999999999876554
No 407
>PRK12435 ferrochelatase; Provisional
Probab=23.94 E-value=5.2e+02 Score=23.83 Aligned_cols=145 Identities=10% Similarity=0.069 Sum_probs=79.5
Q ss_pred HHhhccCHHHHHHHHHCCCCEEEc-Ccc-ccccc-------------CCCCC------CCc--ccchHHHHHHHHHHHHH
Q 019395 58 HWDSYITDEDFKFLSSNGINAVRI-PVG-WWIAN-------------DPTPP------KPF--VGGSSKVLDNAFDWAEK 114 (341)
Q Consensus 58 ~~~~~~~e~d~~~i~~~G~N~VRl-pi~-~~~~~-------------~~~~~------~~~--~~~~l~~ld~~i~~a~~ 114 (341)
||+.++ ++-++.|++.|++.|-+ |+. -+... ..... ..| .+.+++.+-+.|+.+.+
T Consensus 87 y~~P~i-~~~l~~l~~~g~~~iv~lpLyPqyS~~Tt~s~~~~~~~~~~~~~~~~~~~i~~~~~~p~yi~a~a~~I~~~l~ 165 (311)
T PRK12435 87 HIEPFI-EDAVEQMHNDGIEEAISIVLAPHYSTFSVKSYNKRAKEEAEKLGGPTITSIESWYDEPKFIQYWADQIKETFA 165 (311)
T ss_pred CCCCCH-HHHHHHHHHcCCCeEEEEECCCccccccHHHHHHHHHHHhcccCCCeEEEeCCccCChHHHHHHHHHHHHHHH
Confidence 454443 78899999999987765 221 00000 00000 001 13345555544443322
Q ss_pred -------cCCeEEEecCCCCCCCCCCCCCCCCCCccCCchhHHHHHHHHHHHHHHHhCCCCceeEEEee-cCCCCCCCCh
Q 019395 115 -------YGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELI-NEPLAPGVAL 186 (341)
Q Consensus 115 -------~gi~vildlh~~~g~~~~~~~~g~~~~~~~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~-NEP~~~~~~~ 186 (341)
....+|+..|+.|-+.-. .| +.+.++..+..+.++++.+-....++|+-- .-| .
T Consensus 166 ~~~~~~~~~~~llfSaHslP~~~i~---~G---------DpY~~q~~~t~~~v~~~l~~~~~~l~yQSr~~g~------~ 227 (311)
T PRK12435 166 QIPEEEREKAVLIVSAHSLPEKIIA---AG---------DPYPDQLEETADLIAEQANVEHYAIGWQSEGNTP------D 227 (311)
T ss_pred HcCcccccceEEEEecCCCchhHhh---CC---------CCHHHHHHHHHHHHHHHcCCCCCeEeeecCCCCC------C
Confidence 225799999998854210 11 246677777888888877554455667652 111 2
Q ss_pred HHHHHHHHHHHHHHHhc-CCCceEEEeCCCCCCChh
Q 019395 187 DTLKSYYKAGYDAVRKY-TSTAYVIMSNRLGPADHK 221 (341)
Q Consensus 187 ~~~~~~~~~~~~aIR~~-~p~~~v~~~~~~~~~~~~ 221 (341)
+.+.....+.+..+.+. +-+.++++..+|-+...+
T Consensus 228 ~WL~P~t~d~l~~l~~~~G~k~v~vvpigFvsDhlE 263 (311)
T PRK12435 228 PWLGPDVQDLTRDLYEEHGYKSFIYTPVGFVAEHLE 263 (311)
T ss_pred CCCCCCHHHHHHHHHHhcCCceEEEECCchhhhhHH
Confidence 34455666667666655 667778777777653333
No 408
>cd05799 PGM2 This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/ph
Probab=23.87 E-value=3e+02 Score=27.04 Aligned_cols=81 Identities=9% Similarity=-0.002 Sum_probs=46.7
Q ss_pred chHHHHHHHHHH-H--HHcCCeEEEecCCCCCCCCCCCCCCCCCCccCCchhHHHHHHHHHHHHHHHhCCCCceeEEEee
Q 019395 100 GSSKVLDNAFDW-A--EKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELI 176 (341)
Q Consensus 100 ~~l~~ld~~i~~-a--~~~gi~vildlh~~~g~~~~~~~~g~~~~~~~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~ 176 (341)
.+++.|.+.++. . ++.+++|++|..+..+ ..++..+.+++.-.. +..+++.
T Consensus 167 ~Y~~~l~~~i~~~~~~~~~~~kVvvD~~~G~~-------------------------~~~~~~il~~LG~~~-v~~~~~~ 220 (487)
T cd05799 167 AYLEAVKKLLVNPELNEGKDLKIVYTPLHGVG-------------------------GKFVPRALKEAGFTN-VIVVEEQ 220 (487)
T ss_pred HHHHHHHhhhcccccccCCCCcEEEeCCCCcc-------------------------HHHHHHHHHHcCCCC-cEEeeec
Confidence 355555555542 1 3579999999776432 136667777765542 3346677
Q ss_pred cCCCCC--C--CChHHHHHHHHHHHHHHHhcCCC
Q 019395 177 NEPLAP--G--VALDTLKSYYKAGYDAVRKYTST 206 (341)
Q Consensus 177 NEP~~~--~--~~~~~~~~~~~~~~~aIR~~~p~ 206 (341)
++|... . .+.......++++.+.+++.+.+
T Consensus 221 ~~~d~~F~~~~~p~p~~~~~l~~l~~~v~~~~ad 254 (487)
T cd05799 221 AEPDPDFPTVKFPNPEEPGALDLAIELAKKVGAD 254 (487)
T ss_pred cCCCcCCCCCCCCCCCCHHHHHHHHHHHHHhCCC
Confidence 787741 0 11122246677777777766544
No 409
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=23.86 E-value=5.4e+02 Score=23.77 Aligned_cols=59 Identities=20% Similarity=0.180 Sum_probs=45.0
Q ss_pred hccCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCCC
Q 019395 61 SYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGS 129 (341)
Q Consensus 61 ~~~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~ 129 (341)
.-.+.+.+...-++||++|=+--+ .-+| ++.++.-.++++.|+.+|+.|=-.|-+..|.
T Consensus 83 Hg~~~e~i~~ai~~GftSVM~DgS---------~l~~-eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ 141 (307)
T PRK05835 83 HGTTFESCEKAVKAGFTSVMIDAS---------HHAF-EENLELTSKVVKMAHNAGVSVEAELGRLMGI 141 (307)
T ss_pred CCCCHHHHHHHHHcCCCEEEEeCC---------CCCH-HHHHHHHHHHHHHHHHcCCEEEEEecccCCc
Confidence 334577777777889999876322 1344 4578999999999999999999998888654
No 410
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=23.64 E-value=3.3e+02 Score=25.87 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=24.3
Q ss_pred CcccchHHHHHHHHHHHHHcCCeEEEe
Q 019395 96 PFVGGSSKVLDNAFDWAEKYGVKVIVD 122 (341)
Q Consensus 96 ~~~~~~l~~ld~~i~~a~~~gi~vild 122 (341)
-|.+..++.|+.++..|.++||+||++
T Consensus 51 gY~~~~~~~L~~~L~~~~~~gIkvI~N 77 (362)
T PF07287_consen 51 GYAPDFVRDLRPLLPAAAEKGIKVITN 77 (362)
T ss_pred CchHHHHHHHHHHHHHHHhCCCCEEEe
Confidence 366778899999999999999999997
No 411
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=23.64 E-value=6.2e+02 Score=23.81 Aligned_cols=57 Identities=28% Similarity=0.211 Sum_probs=38.6
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCC
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA 126 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~ 126 (341)
-+++...-+.|.++|=+... .+.-......+ ..+.+.++|+.|+++|.++.+.+-..
T Consensus 16 l~~l~~ai~~GADaVY~G~~--~~~~R~~a~nf---s~~~l~e~i~~ah~~gkk~~V~~N~~ 72 (347)
T COG0826 16 LEDLKAAIAAGADAVYIGEK--EFGLRRRALNF---SVEDLAEAVELAHSAGKKVYVAVNTL 72 (347)
T ss_pred HHHHHHHHHcCCCEEEeCCc--ccccccccccC---CHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 45677777889999888764 11111111123 35669999999999999988876654
No 412
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=23.54 E-value=5.7e+02 Score=23.32 Aligned_cols=63 Identities=21% Similarity=0.339 Sum_probs=46.6
Q ss_pred HHhhccCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCCCC
Q 019395 58 HWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQ 130 (341)
Q Consensus 58 ~~~~~~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~ 130 (341)
|.+..-+.+.+...-++||++|=+--+ .-|| ++.++.-.++++.|+.+|+.|=-.|-+..|..
T Consensus 80 HLDHg~~~e~i~~Ai~~GftSVM~DgS---------~l~~-eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e 142 (284)
T PRK09195 80 HLDHHEKFDDIAQKVRSGVRSVMIDGS---------HLPF-AQNISLVKEVVDFCHRFDVSVEAELGRLGGQE 142 (284)
T ss_pred ECCCCCCHHHHHHHHHcCCCEEEeCCC---------CCCH-HHHHHHHHHHHHHHHHcCCEEEEEEecccCcc
Confidence 333344677788888899999876322 1244 45788999999999999999998888886543
No 413
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=23.41 E-value=5.3e+02 Score=22.96 Aligned_cols=56 Identities=18% Similarity=0.223 Sum_probs=36.4
Q ss_pred ccCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCC
Q 019395 62 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHA 125 (341)
Q Consensus 62 ~~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~ 125 (341)
|.-|--.+.|+++|++.|=|..+=- ...+ .+.-+.+.+=+..|.++||.+|+.+-.
T Consensus 73 ~TGevS~~mLkd~G~~~viiGHSER-------R~~f-~Etd~~v~~K~~~a~~~gl~pIvCiGE 128 (250)
T PRK00042 73 FTGEISAEMLKDLGVKYVIIGHSER-------RQYF-GETDELVNKKVKAALKAGLTPILCVGE 128 (250)
T ss_pred ccCccCHHHHHHCCCCEEEeCcccc-------cCcc-CcCHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 3346667889999999998765411 1111 122344555556699999999998653
No 414
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=23.27 E-value=2.9e+02 Score=26.96 Aligned_cols=62 Identities=15% Similarity=0.112 Sum_probs=40.9
Q ss_pred cCHHHHHHHHHC--CCCEEEcCcccc--cccCCCCCCCcccchHHHHHHHHHHHHHc--CCeEEEecC-CCCC
Q 019395 63 ITDEDFKFLSSN--GINAVRIPVGWW--IANDPTPPKPFVGGSSKVLDNAFDWAEKY--GVKVIVDLH-AAPG 128 (341)
Q Consensus 63 ~~e~d~~~i~~~--G~N~VRlpi~~~--~~~~~~~~~~~~~~~l~~ld~~i~~a~~~--gi~vildlh-~~~g 128 (341)
++++.++.|++. |++.+-||+--- .....-. -.+ ..+.+.++|+.+++. ||.+..|+- ++||
T Consensus 243 l~~ell~~~~~~~~g~~~l~iglQSgsd~vLk~m~-R~~---t~~~~~~~v~~lr~~~pgi~i~td~IvGfPg 311 (445)
T PRK14340 243 ISESLVRTIAARPNICNHIHLPVQSGSSRMLRRMN-RGH---TIEEYLEKIALIRSAIPGVTLSTDLIAGFCG 311 (445)
T ss_pred cCHHHHHHHHhCCCCCCeEEECCCcCCHHHHHhcC-CCC---CHHHHHHHHHHHHHhCCCCEEeccEEEECCC
Confidence 578999999886 799998887320 0000000 012 367888999999999 998777753 4453
No 415
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=23.17 E-value=5.8e+02 Score=23.27 Aligned_cols=62 Identities=21% Similarity=0.297 Sum_probs=46.2
Q ss_pred HHhhccCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCCC
Q 019395 58 HWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGS 129 (341)
Q Consensus 58 ~~~~~~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~ 129 (341)
|.+...+.+.+...-+.||++|=+--+ .-|| ++.++.-.++++.|+++|+.|=-.|-+..|.
T Consensus 80 HLDH~~~~e~i~~ai~~GftSVMiDgS---------~lp~-eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~ 141 (284)
T PRK12737 80 HLDHHEDLDDIKKKVRAGIRSVMIDGS---------HLSF-EENIAIVKEVVEFCHRYDASVEAELGRLGGQ 141 (284)
T ss_pred ECCCCCCHHHHHHHHHcCCCeEEecCC---------CCCH-HHHHHHHHHHHHHHHHcCCEEEEEEeeccCc
Confidence 344444567788888889999876322 1244 4578999999999999999999999888654
No 416
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=23.10 E-value=1.9e+02 Score=24.49 Aligned_cols=55 Identities=16% Similarity=0.135 Sum_probs=36.8
Q ss_pred HHHHHHHhCCC-CceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCC-ceEEEe
Q 019395 157 IDFLAARYANR-PSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTST-AYVIMS 212 (341)
Q Consensus 157 ~~~la~~y~~~-~~v~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~-~~v~~~ 212 (341)
...|++...++ ..|.+++.-.... .......+.+.+...++.|++..|+ ..+++|
T Consensus 16 y~~la~~l~~~~~~v~~i~~~~~~~-~~~~~~si~~la~~y~~~I~~~~~~gp~~L~G 72 (229)
T PF00975_consen 16 YRPLARALPDDVIGVYGIEYPGRGD-DEPPPDSIEELASRYAEAIRARQPEGPYVLAG 72 (229)
T ss_dssp GHHHHHHHTTTEEEEEEECSTTSCT-TSHEESSHHHHHHHHHHHHHHHTSSSSEEEEE
T ss_pred HHHHHHhCCCCeEEEEEEecCCCCC-CCCCCCCHHHHHHHHHHHhhhhCCCCCeeehc
Confidence 45677777776 6677776555431 1123356888888899999999998 445554
No 417
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=23.07 E-value=2.5e+02 Score=27.78 Aligned_cols=59 Identities=25% Similarity=0.272 Sum_probs=38.6
Q ss_pred cCHHHHHHHHHCCCCEEEcCccccc-ccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEe
Q 019395 63 ITDEDFKFLSSNGINAVRIPVGWWI-ANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVD 122 (341)
Q Consensus 63 ~~e~d~~~i~~~G~N~VRlpi~~~~-~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vild 122 (341)
.|.++...+.++|++.|++.++--. .....- .-.-...+..+.++.+.|.+.|+.||.|
T Consensus 278 ~t~e~a~~l~~aGad~i~vg~g~gs~~~~r~~-~~~g~p~~~~~~~~~~~~~~~~~~viad 337 (486)
T PRK05567 278 ATAEAARALIEAGADAVKVGIGPGSICTTRIV-AGVGVPQITAIADAAEAAKKYGIPVIAD 337 (486)
T ss_pred CCHHHHHHHHHcCCCEEEECCCCCccccceee-cCCCcCHHHHHHHHHHHhccCCCeEEEc
Confidence 4799999999999999998654210 000000 0001125677777888888889998885
No 418
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=22.94 E-value=2.2e+02 Score=24.52 Aligned_cols=52 Identities=15% Similarity=0.174 Sum_probs=27.0
Q ss_pred HHHHHH-HhCCCCceeEEEeec-CCCCCCCChHHHHHH-HHHHHHHHHhcCCCceE
Q 019395 157 IDFLAA-RYANRPSLAAIELIN-EPLAPGVALDTLKSY-YKAGYDAVRKYTSTAYV 209 (341)
Q Consensus 157 ~~~la~-~y~~~~~v~~~el~N-EP~~~~~~~~~~~~~-~~~~~~aIR~~~p~~~v 209 (341)
|.++|. +-.....|+|+||.+ ||-. +.+.-.-... =.+++..|++..|++.|
T Consensus 83 WsQVavqr~~p~g~v~gVDllh~~p~~-Ga~~i~~~dvtdp~~~~ki~e~lp~r~V 137 (232)
T KOG4589|consen 83 WSQVAVQRVNPNGMVLGVDLLHIEPPE-GATIIQGNDVTDPETYRKIFEALPNRPV 137 (232)
T ss_pred HHHHHHHhhCCCceEEEEeeeeccCCC-CcccccccccCCHHHHHHHHHhCCCCcc
Confidence 455553 333556799999998 4543 2111000000 12445667777787554
No 419
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=22.92 E-value=4.2e+02 Score=27.99 Aligned_cols=57 Identities=14% Similarity=0.070 Sum_probs=37.4
Q ss_pred HHHHHHHHHCCCC--EEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecC
Q 019395 65 DEDFKFLSSNGIN--AVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 124 (341)
Q Consensus 65 e~d~~~i~~~G~N--~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh 124 (341)
++-.+.+.++|+. ..=.-+.| ++....-.+++..+..+...++..+++|+++||-++
T Consensus 314 ~dvv~~~~~agiPld~~~~DiDy---Md~ykDFTvd~~~fp~~~~fv~~Lh~~G~kyvliid 372 (805)
T KOG1065|consen 314 RDVVENYRAAGIPLDVIVIDIDY---MDGYKDFTVDKVWFPDLKDFVDDLHARGFKYVLIID 372 (805)
T ss_pred HHHHHHHHHcCCCcceeeeehhh---hhcccceeeccccCcchHHHHHHHHhCCCeEEEEeC
Confidence 3445566788877 55444544 222222234455555688999999999999998887
No 420
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=22.89 E-value=4.2e+02 Score=25.22 Aligned_cols=153 Identities=12% Similarity=0.151 Sum_probs=81.1
Q ss_pred HHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCC------CCC----
Q 019395 70 FLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHS------ATR---- 139 (341)
Q Consensus 70 ~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~------g~~---- 139 (341)
.|.-+||-+.|+|+.|. +..+ -+.+.++|+.|-++|+.-|=+...+.++... ..- +.+
T Consensus 12 ~~s~lgfG~MRlp~~~~--------~~id---~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE-~~lgkaL~~~~Rekv~ 79 (391)
T COG1453 12 ELSILGFGCMRLPLKEQ--------GSID---EENANETIDYAIEHGINYIDTAWPYHGGESE-EFLGKALKDGYREKVK 79 (391)
T ss_pred ccceeccceeecccccC--------CCcc---HHHHHHHHHHHHHcCCceEeecccccCCCch-HHHHHHhhhcccceEE
Confidence 45668999999999763 1233 4788899999999999877766555332110 000 001
Q ss_pred --CCccCCchhHHHHHHHHHHHHHHHhCC-CCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCC-ceEEEeCCC
Q 019395 140 --DGFQEWGDSNVADTVAVIDFLAARYAN-RPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTST-AYVIMSNRL 215 (341)
Q Consensus 140 --~~~~~w~~~~~~~~~~~~~~la~~y~~-~~~v~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~-~~v~~~~~~ 215 (341)
...+.|.-+..+.+.+++..=.++++- +-.+.++-=+|+ . ..+...++= +++.+++.-.+ ++..++-++
T Consensus 80 LaTKlp~~~~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~-e----~~~k~~~~g--~~df~~kak~eGkIr~~GFSf 152 (391)
T COG1453 80 LATKLPSWPVKDREDMERIFNEQLEKLGTDYIDYYLIHGLNT-E----TWEKIERLG--VFDFLEKAKAEGKIRNAGFSF 152 (391)
T ss_pred EEeecCCccccCHHHHHHHHHHHHHHhCCchhhhhhhccccH-H----HHHHHHccC--hHHHHHHHHhcCcEEEeeecC
Confidence 112334434455566666655555543 233333334444 2 122222221 35555554433 344444222
Q ss_pred CCCChhhhhhccCCCCcEEEEeeecCC
Q 019395 216 GPADHKELLSFASGLSRVVIDVHYYNL 242 (341)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~v~~~H~Y~~ 242 (341)
.+ ....+....+..+-..+..|+|..
T Consensus 153 Hg-s~e~~~~iv~a~~~dfvqlq~ny~ 178 (391)
T COG1453 153 HG-STEVFKEIVDAYPWDFVQLQYNYI 178 (391)
T ss_pred CC-CHHHHHHHHhcCCcceEEeeeeee
Confidence 21 223344444555678899998865
No 421
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=22.80 E-value=2.8e+02 Score=19.58 Aligned_cols=45 Identities=16% Similarity=0.288 Sum_probs=32.7
Q ss_pred HHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCC
Q 019395 69 KFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPG 128 (341)
Q Consensus 69 ~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g 128 (341)
..++.+|+.+||-+- ..+..+.|.++++.++ .|..+.++..+..|
T Consensus 27 ~~~~~~G~~~iRGSs--------------~rgg~~Alr~~~~~lk-~G~~~~itpDGPrG 71 (74)
T PF04028_consen 27 RVLERFGFRTIRGSS--------------SRGGARALREMLRALK-EGYSIAITPDGPRG 71 (74)
T ss_pred HHHHHcCCCeEEeCC--------------CCcHHHHHHHHHHHHH-CCCeEEEeCCCCCC
Confidence 345778999999651 1346788888888888 78888887765543
No 422
>PRK08227 autoinducer 2 aldolase; Validated
Probab=22.78 E-value=1.3e+02 Score=27.17 Aligned_cols=46 Identities=20% Similarity=0.096 Sum_probs=35.1
Q ss_pred HHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEE
Q 019395 68 FKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIV 121 (341)
Q Consensus 68 ~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vil 121 (341)
++..-++|.+.|=+.+.+ +.+...+.++.+-++++.|+++||-+|+
T Consensus 100 VeeAvrlGAdAV~~~v~~--------Gs~~E~~~l~~l~~v~~ea~~~G~Plla 145 (264)
T PRK08227 100 MEDAVRLNACAVAAQVFI--------GSEYEHQSIKNIIQLVDAGLRYGMPVMA 145 (264)
T ss_pred HHHHHHCCCCEEEEEEec--------CCHHHHHHHHHHHHHHHHHHHhCCcEEE
Confidence 455667888888876643 1233345899999999999999999888
No 423
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=22.53 E-value=1.8e+02 Score=24.90 Aligned_cols=52 Identities=12% Similarity=0.204 Sum_probs=33.4
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEe
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVD 122 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vild 122 (341)
...++.+..+..+.|+|.-.+-.... -+......++.++..|+++|+.||+.
T Consensus 157 ~~~~~~l~~~~~d~iKld~~~~~~~~------~~~~~~~~l~~l~~~~~~~~~~via~ 208 (240)
T cd01948 157 YSSLSYLKRLPVDYLKIDRSFVRDIE------TDPEDRAIVRAIIALAHSLGLKVVAE 208 (240)
T ss_pred HhhHHHHHhCCCCEEEECHHHHHhHh------cChhhHHHHHHHHHHHHHCCCeEEEE
Confidence 45556666666666666543311110 01234677889999999999999985
No 424
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=22.50 E-value=2.3e+02 Score=27.15 Aligned_cols=44 Identities=20% Similarity=0.237 Sum_probs=31.1
Q ss_pred HHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCC
Q 019395 68 FKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA 126 (341)
Q Consensus 68 ~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~ 126 (341)
++.++++|.+.+=++. +...+.+.++++.++++|+++++|+-+.
T Consensus 243 v~~~a~aGAD~vTVH~---------------ea~~~ti~~ai~~akk~GikvgVD~lnp 286 (391)
T PRK13307 243 ARMAADATADAVVISG---------------LAPISTIEKAIHEAQKTGIYSILDMLNV 286 (391)
T ss_pred HHHHHhcCCCEEEEec---------------cCCHHHHHHHHHHHHHcCCEEEEEEcCC
Confidence 4455666666665532 1124568899999999999999987664
No 425
>PF08373 RAP: RAP domain; InterPro: IPR013584 The ~60-residue RAP (an acronym for RNA-binding domain abundant in Apicomplexans) domain is found in various proteins in eukaryotes. It is particularly abundant in apicomplexans and might mediate a range of cellular functions through its potential interactions with RNA []. The RAP domain consists of multiple blocks of charged and aromatics residues and is predicted to be composed of alpha helical and beta strand structures. Two predicted loop regions that are dominated by glycine and tryptophan residues are found before and after the central beta sheet []. Some proteins known to contain a RAP domain are listed below: Human hypothetical protein MGC5297, Mammalian FAST kinase domain-containing proteins (FASTKDs), Chlamydomonas reinhardtii chloroplastic trans-splicing factor Raa3.
Probab=22.39 E-value=48 Score=21.79 Aligned_cols=20 Identities=25% Similarity=0.468 Sum_probs=16.0
Q ss_pred HHHHHHCCCCEEEcCccccc
Q 019395 68 FKFLSSNGINAVRIPVGWWI 87 (341)
Q Consensus 68 ~~~i~~~G~N~VRlpi~~~~ 87 (341)
-+.|+++|.+.|.||..-|.
T Consensus 24 ~r~L~~~G~~Vi~Ip~~eW~ 43 (58)
T PF08373_consen 24 HRHLKALGYKVISIPYYEWN 43 (58)
T ss_pred HHHHHHCCCEEEEecHHHHH
Confidence 35689999999999886553
No 426
>TIGR02883 spore_cwlD N-acetylmuramoyl-L-alanine amidase CwlD. Members of this protein family are the CwlD family of N-acetylmuramoyl-L-alanine amidase. This family has been called the germination-specific N-acetylmuramoyl-L-alanine amidase. CwlD is required, along with the putative deactylase PdaA, to make muramic delta-lactam, a novel peptidoglycan constituent found only in spores. CwlD mutants show a germination defect.
Probab=22.36 E-value=4.7e+02 Score=21.92 Aligned_cols=70 Identities=10% Similarity=0.025 Sum_probs=41.6
Q ss_pred HHHhhccCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCC
Q 019395 57 DHWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAP 127 (341)
Q Consensus 57 ~~~~~~~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~ 127 (341)
+...-.+...--+.|++.|++++-..-.-- .+.+.....+.......|.+-++.|.+.+-.+.|.+|...
T Consensus 25 ~~~~l~ia~~l~~~L~~~G~~V~ltr~~d~-~~~~~~~~~~~~~~~~~L~~R~~~An~~~adlfiSiH~Na 94 (189)
T TIGR02883 25 KDITLEIALKLKDYLQEQGALVVMTREDDS-DLASEGTKGYSRRKIEDLRKRVKLINESEADLFISIHLNA 94 (189)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEecCCc-CccccccccccccccCCHHHHHHHHHhcCCCEEEEEecCC
Confidence 333334556677788899999886532210 1101000012222334577778999999999999999863
No 427
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=22.22 E-value=7.9e+02 Score=24.50 Aligned_cols=61 Identities=13% Similarity=0.204 Sum_probs=34.2
Q ss_pred cCHHHHHHHHHCC--CCEEEcCcccc--cccCCCCCCCcccchHHHHHHHHHHHHHc--CCeEEEec-CCCC
Q 019395 63 ITDEDFKFLSSNG--INAVRIPVGWW--IANDPTPPKPFVGGSSKVLDNAFDWAEKY--GVKVIVDL-HAAP 127 (341)
Q Consensus 63 ~~e~d~~~i~~~G--~N~VRlpi~~~--~~~~~~~~~~~~~~~l~~ld~~i~~a~~~--gi~vildl-h~~~ 127 (341)
++++-++.|++.| ++++-||+--- .....-. -.+ ..+.+.++|+.++++ |+.+-.|+ -++|
T Consensus 307 i~deli~~m~~~g~~~~~l~lgvQSgsd~vLk~M~-R~~---t~e~~~~~v~~lr~~~p~i~i~tdiIvGfP 374 (509)
T PRK14327 307 FDDHLIEVLAKGGNLVEHIHLPVQSGSTEVLKIMA-RKY---TRESYLELVRKIKEAIPNVALTTDIIVGFP 374 (509)
T ss_pred CCHHHHHHHHhcCCccceEEeccCCCCHHHHHhcC-CCC---CHHHHHHHHHHHHHhCCCcEEeeeEEEeCC
Confidence 5677788888888 56666665210 0000000 012 256777899999888 56554443 2444
No 428
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=22.19 E-value=2.1e+02 Score=26.77 Aligned_cols=47 Identities=19% Similarity=0.256 Sum_probs=32.1
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCC
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAP 127 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~ 127 (341)
-+.++.|..+|.+.||+.++- .+.-..+-+.+++..+-+|-|+|..+
T Consensus 39 v~QI~~L~~aG~dIVRvtv~~----------------~e~A~A~~~Ik~~~~vPLVaDiHf~~ 85 (361)
T COG0821 39 VAQIKALERAGCDIVRVTVPD----------------MEAAEALKEIKQRLNVPLVADIHFDY 85 (361)
T ss_pred HHHHHHHHHcCCCEEEEecCC----------------HHHHHHHHHHHHhCCCCEEEEeeccH
Confidence 577888899999999997741 11112222334455999999999763
No 429
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=22.14 E-value=58 Score=28.06 Aligned_cols=54 Identities=17% Similarity=0.211 Sum_probs=36.6
Q ss_pred CCcccCCcccccccccCCcchhhhhhhhcCcchHHHHHHHHHhh--ccCHHHHHHH
Q 019395 18 SSWDDSDPSVFKLNIVSTLRGEYQITNGFGPDKAPQVLQDHWDS--YITDEDFKFL 71 (341)
Q Consensus 18 ~~~~~~~p~~f~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~e~d~~~i 71 (341)
++|++..|.+|..-..+........+-+.|...+...|+++|.. -+++++.-.+
T Consensus 130 ~G~D~~gp~Ly~~Dp~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~~ms~ee~i~~ 185 (211)
T cd03749 130 AGYDESGPHLFQTCPSGNYFEYKATSIGARSQSARTYLERHFEEFEDCSLEELIKH 185 (211)
T ss_pred EEEcCCCCeEEEECCCcCEeeeeEEEECCCcHHHHHHHHHhhccccCCCHHHHHHH
Confidence 66666679999865544444444456677888899999999974 4666664433
No 430
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=21.83 E-value=2.8e+02 Score=24.78 Aligned_cols=28 Identities=29% Similarity=0.248 Sum_probs=23.2
Q ss_pred chHHHHHHHHHHHHHcCCeEEEecCCCC
Q 019395 100 GSSKVLDNAFDWAEKYGVKVIVDLHAAP 127 (341)
Q Consensus 100 ~~l~~ld~~i~~a~~~gi~vildlh~~~ 127 (341)
.-+..+|++++.+...-=.+++|+|.-.
T Consensus 127 ~PF~~~d~l~~~~~~~~~~iiVDFHAEt 154 (266)
T COG1692 127 NPFKAADKLLDEIKLGTDLIIVDFHAET 154 (266)
T ss_pred CHHHHHHHHHHhCccCCceEEEEccccc
Confidence 4578899999999887777999999764
No 431
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=21.80 E-value=1.6e+02 Score=26.08 Aligned_cols=65 Identities=20% Similarity=0.272 Sum_probs=38.4
Q ss_pred hccCHHHHHH-------HHHCCCCEEEcCccccc-ccCCCCCCCcccchHHHHHHHHHHHHHcCCe-EEEecCCCC
Q 019395 61 SYITDEDFKF-------LSSNGINAVRIPVGWWI-ANDPTPPKPFVGGSSKVLDNAFDWAEKYGVK-VIVDLHAAP 127 (341)
Q Consensus 61 ~~~~e~d~~~-------i~~~G~N~VRlpi~~~~-~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~-vildlh~~~ 127 (341)
+.+|++.++. |+++||..||+.+.-.. .++- +++.+ ...++..+.+++..++.|.. |-|||.++.
T Consensus 177 ~~it~~~l~~v~~~E~~l~~~g~~~~rvr~~~~~a~ie~-~~~~~-~~~~~~~~~i~~~~~~~gf~~v~ldl~g~~ 250 (252)
T TIGR00268 177 REIDEEKLKMVDEAEEVLRNAGVGQVRVRNYDNLAVIEV-PEDEL-SKLLNEAEEVRDKFKDIGFRKVLIDLEGYR 250 (252)
T ss_pred CcCCHHHHHHHHHHHHHHHHcCCCeEEEEecCCeEEEEE-CHHHH-HHHHhhHHHHHHHHHHcCCCeEEEccCCcc
Confidence 3456555554 46789999999753110 0110 00111 12333447788999999985 778988763
No 432
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=21.80 E-value=45 Score=28.14 Aligned_cols=54 Identities=20% Similarity=0.263 Sum_probs=34.8
Q ss_pred CCcccCCcccccccccCCcchhhhhhhhcCcchHHHHHHHHHhhccCHHHHHHH
Q 019395 18 SSWDDSDPSVFKLNIVSTLRGEYQITNGFGPDKAPQVLQDHWDSYITDEDFKFL 71 (341)
Q Consensus 18 ~~~~~~~p~~f~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~e~d~~~i 71 (341)
++|++..|.+|..-..+........+-+.|..-+...|+++|..-++.++...+
T Consensus 102 ~G~D~~g~~L~~~dp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l 155 (188)
T cd03761 102 CGWDKTGPGLYYVDSDGTRLKGDLFSVGSGSTYAYGVLDSGYRYDLSVEEAYDL 155 (188)
T ss_pred EEEeCCCCEEEEEcCCceEEEcCeEEEcccHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 566666788887533333222233456777778888999999876666555444
No 433
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=21.78 E-value=2.1e+02 Score=26.76 Aligned_cols=58 Identities=17% Similarity=0.160 Sum_probs=38.2
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCC
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA 126 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~ 126 (341)
.+-.+.+|+.|.+.+|-.+. -+.+.+..|..-..+-|+-+.+.|++.||.++-++|..
T Consensus 110 ~~~A~~lk~~ga~~~r~~~f----KpRTsp~sf~G~g~~gL~~L~~~~~~~Gl~v~tev~d~ 167 (335)
T PRK08673 110 LEIARAVKEAGAQILRGGAF----KPRTSPYSFQGLGEEGLKLLAEAREETGLPIVTEVMDP 167 (335)
T ss_pred HHHHHHHHHhchhhccCcEe----cCCCCCcccccccHHHHHHHHHHHHHcCCcEEEeeCCH
Confidence 34556778899999886432 22222222322245666667788999999999999865
No 434
>PF02156 Glyco_hydro_26: Glycosyl hydrolase family 26; InterPro: IPR022790 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 26 GH26 from CAZY encompasses mainly mannan endo-1,4-beta-mannosidases (3.2.1.78 from EC). Mannan endo-1,4-beta-mannosidase hydrolyses mannan and galactomannan, but displays little activity towards other plant cell wall polysaccharides []. The enzyme randomly hydrolyses 1,4-beta-D-linkages in mannans, galacto-mannans, glucomannans and galactoglucomannans. This entry also incoporates the enzyme Endogluconase H 3.2.1.4 from EC catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans. ; GO: 0008810 cellulase activity, 0016985 mannan endo-1,4-beta-mannosidase activity, 0006080 substituted mannan metabolic process; PDB: 2QHA_A 3CBW_A 2WHK_A 2VI0_A 2BVD_A 2BV9_A 2CIT_A 2V3G_A 2CIP_A 2X2Y_B ....
Probab=21.73 E-value=2.7e+02 Score=25.71 Aligned_cols=57 Identities=14% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCCccCCc-hhH---HHHHHHHHHHHHHHhCCCCce
Q 019395 102 SKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWG-DSN---VADTVAVIDFLAARYANRPSL 170 (341)
Q Consensus 102 l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~~w~-~~~---~~~~~~~~~~la~~y~~~~~v 170 (341)
++.+-..++.+++.|+-||+-+.|- ..|.-+|- ... .+.++++|+.+.+++++...+
T Consensus 136 ld~iA~~l~~l~~~~vPVl~Rp~HE------------~nG~WfwWg~~~~~~~~~y~~lwr~~~~~l~~~~g~ 196 (311)
T PF02156_consen 136 LDRIADFLKQLKDAGVPVLFRPFHE------------MNGGWFWWGAKGHCTPEQYKALWRHMVDYLRNVKGL 196 (311)
T ss_dssp HHHHHHHHHHHHCTTS-EEEEESTS------------TTSSSSTTSTTSTCHHHHHHHHHHHHHHHHHTTST-
T ss_pred HHHHHHHHHHhhcCCCeEEEeehhh------------cCCCccccCCCCCCCHHHHHHHHHHHHHHHHhccCC
No 435
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=21.70 E-value=1.9e+02 Score=26.43 Aligned_cols=62 Identities=19% Similarity=0.275 Sum_probs=45.8
Q ss_pred HHhhccCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCCC
Q 019395 58 HWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGS 129 (341)
Q Consensus 58 ~~~~~~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~ 129 (341)
|.+..-+.+.+...-++||++|=+--+ .-|| ++.++.-.++++.|+++|+-|=-.|-+..|.
T Consensus 80 HLDHg~~~e~i~~ai~~GFtSVM~DgS---------~lp~-eeNi~~T~evv~~Ah~~gv~VEaElG~igg~ 141 (286)
T PRK12738 80 HLDHHESLDDIRRKVHAGVRSAMIDGS---------HFPF-AENVKLVKSVVDFCHSQDCSVEAELGRLGGV 141 (286)
T ss_pred ECCCCCCHHHHHHHHHcCCCeEeecCC---------CCCH-HHHHHHHHHHHHHHHHcCCeEEEEEEeeCCc
Confidence 333334567777777889999876322 2244 5578999999999999999999998887654
No 436
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=21.62 E-value=4.5e+02 Score=23.81 Aligned_cols=57 Identities=11% Similarity=0.051 Sum_probs=48.8
Q ss_pred HHHHHHHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCceEEEe
Q 019395 155 AVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMS 212 (341)
Q Consensus 155 ~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~v~~~ 212 (341)
..++.+.++.-+..-|...|..|=|.+ ..+.+.++++..++.+.+.+.+++.+|+--
T Consensus 19 sVlrei~~~LP~e~~iY~~D~a~~PYG-~ks~e~I~~~~~~i~~~l~~~~ik~lVIAC 75 (269)
T COG0796 19 SVLREIRRQLPDEDIIYVGDTARFPYG-EKSEEEIRERTLEIVDFLLERGIKALVIAC 75 (269)
T ss_pred HHHHHHHHHCCCCcEEEEecCCCCCCC-CCCHHHHHHHHHHHHHHHHHcCCCEEEEec
Confidence 478888888888888888999999997 567889999999999999999987777664
No 437
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=21.59 E-value=6.5e+02 Score=23.28 Aligned_cols=31 Identities=19% Similarity=0.279 Sum_probs=27.2
Q ss_pred CcccchHHHHHHHHHHHHHcCCeEEEecCCC
Q 019395 96 PFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA 126 (341)
Q Consensus 96 ~~~~~~l~~ld~~i~~a~~~gi~vildlh~~ 126 (341)
-++++.+..+.++++.++++|-++++=|+|.
T Consensus 70 ~~~d~~~~~~~~l~~~vh~~G~~~~~QL~H~ 100 (336)
T cd02932 70 LWNDEQIEALKRIVDFIHSQGAKIGIQLAHA 100 (336)
T ss_pred ecCHHHHHHHHHHHHHHHhcCCcEEEEccCC
Confidence 3456789999999999999999999999874
No 438
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=21.45 E-value=5.8e+02 Score=22.67 Aligned_cols=33 Identities=21% Similarity=0.166 Sum_probs=19.5
Q ss_pred ceEEEeecCCCCCCCCCHHHHHHHHHHHHHHHc
Q 019395 277 LTFVGEWTCEWNVKDASKQDYQRFANAQLDVYG 309 (341)
Q Consensus 277 pv~vGE~g~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (341)
.+-|||-|..+.......+...++++.|++.-.
T Consensus 92 ~~aIGEiGLD~~~~~~~~~~Q~~vf~~ql~lA~ 124 (258)
T PRK11449 92 VVAVGEIGLDLFGDDPQFERQQWLLDEQLKLAK 124 (258)
T ss_pred EEEEEecccCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 477999998653222344555566666665533
No 439
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=21.32 E-value=3.3e+02 Score=24.63 Aligned_cols=55 Identities=20% Similarity=0.260 Sum_probs=36.1
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcc-cchHHHHHHHHHHHHHcCCe-EEEe
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFV-GGSSKVLDNAFDWAEKYGVK-VIVD 122 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~-~~~l~~ld~~i~~a~~~gi~-vild 122 (341)
++.++.+++.|++.|.+++.- .++.....+. ...++.+-+.|+.+.+.|+. |-+.
T Consensus 98 ~~~~~~l~~~g~~~v~iSld~---~~~~~~~~i~~~~~~~~vl~~i~~~~~~G~~~v~i~ 154 (302)
T TIGR02668 98 EKLAKKLKEAGLDRVNVSLDT---LDPEKYKKITGRGALDRVIEGIESAVDAGLTPVKLN 154 (302)
T ss_pred HHHHHHHHHCCCCEEEEEecC---CCHHHhhhccCCCcHHHHHHHHHHHHHcCCCcEEEE
Confidence 456778899999999988742 1111101111 23678888899999999986 5444
No 440
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=21.29 E-value=4.2e+02 Score=27.06 Aligned_cols=53 Identities=13% Similarity=0.134 Sum_probs=38.0
Q ss_pred HHhhccCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecC
Q 019395 58 HWDSYITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 124 (341)
Q Consensus 58 ~~~~~~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh 124 (341)
++..-+.+..++..++.|+..+|+.-. . +.++.+...++.+++.|+.+...+.
T Consensus 92 ~~~d~vv~~~v~~a~~~Gidv~Rifd~----l----------nd~~n~~~~i~~~k~~G~~~~~~i~ 144 (596)
T PRK14042 92 NYADDVVRAFVKLAVNNGVDVFRVFDA----L----------NDARNLKVAIDAIKSHKKHAQGAIC 144 (596)
T ss_pred cCChHHHHHHHHHHHHcCCCEEEEccc----C----------cchHHHHHHHHHHHHcCCEEEEEEE
Confidence 444445677889999999999998321 1 1246677888999999988776643
No 441
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=21.18 E-value=4.5e+02 Score=23.33 Aligned_cols=57 Identities=7% Similarity=0.060 Sum_probs=47.1
Q ss_pred HHHHHHHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHH-hcCCCceEEEe
Q 019395 155 AVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVR-KYTSTAYVIMS 212 (341)
Q Consensus 155 ~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR-~~~p~~~v~~~ 212 (341)
.+++.+.+++.+..-+..-|..|=|.+ ..+.+.+..++.++++.+. +.+.+.+|+-.
T Consensus 12 tv~~~l~~~~p~~~~iy~~D~~~~PYG-~ks~~~i~~~~~~~~~~L~~~~g~d~ivIaC 69 (251)
T TIGR00067 12 SVLKEIRKQLPKEHYIYVGDTKRFPYG-EKSPEFILEYVLELLTFLKERHNIKLLVVAC 69 (251)
T ss_pred HHHHHHHHHCCCCCEEEEecCCCCCCC-CCCHHHHHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 478888888888777777889999997 5677899999999999998 88887766654
No 442
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=20.97 E-value=1e+02 Score=29.22 Aligned_cols=27 Identities=15% Similarity=0.153 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhcCCCceEEEeCCCC
Q 019395 190 KSYYKAGYDAVRKYTSTAYVIMSNRLG 216 (341)
Q Consensus 190 ~~~~~~~~~aIR~~~p~~~v~~~~~~~ 216 (341)
..=.+++++.||+++|+.+|+|.++++
T Consensus 174 i~~I~~~i~~vk~~~p~~iifVDNCYG 200 (403)
T PF06838_consen 174 IEEIKEIIKFVKEINPDVIIFVDNCYG 200 (403)
T ss_dssp HHHHHHHHHHHHHH-TTSEEEEE-TTT
T ss_pred HHHHHHHHHHHHhhCCCeEEEEeCCcc
Confidence 345678899999999999999998776
No 443
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=20.93 E-value=1.2e+02 Score=25.62 Aligned_cols=29 Identities=3% Similarity=0.155 Sum_probs=23.7
Q ss_pred ChHHHHHHHHHHHHHHHhcCCCceEEEeC
Q 019395 185 ALDTLKSYYKAGYDAVRKYTSTAYVIMSN 213 (341)
Q Consensus 185 ~~~~~~~~~~~~~~aIR~~~p~~~v~~~~ 213 (341)
+.+.+.+-+...++.||+..|+++|++-+
T Consensus 72 ~~~~~~~~~~~fv~~iR~~hP~tPIllv~ 100 (178)
T PF14606_consen 72 SPEEFRERLDGFVKTIREAHPDTPILLVS 100 (178)
T ss_dssp CTTTHHHHHHHHHHHHHTT-SSS-EEEEE
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 45789999999999999999999998864
No 444
>PRK05434 phosphoglyceromutase; Provisional
Probab=20.80 E-value=3.4e+02 Score=27.09 Aligned_cols=54 Identities=15% Similarity=0.140 Sum_probs=39.0
Q ss_pred HHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecC
Q 019395 65 DEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 124 (341)
Q Consensus 65 e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh 124 (341)
..-++..++.|++-|||++ +.+.....| ..++.+|+++.+.++++|..-|-++-
T Consensus 131 ~~l~~~a~~~g~~~v~vH~----~~DGRD~~p--~s~~~~i~~l~~~~~~~~~~~iasv~ 184 (507)
T PRK05434 131 FALLELAKEEGVKKVYVHA----FLDGRDTPP--KSALGYLEELEAKLAELGVGRIASVS 184 (507)
T ss_pred HHHHHHHHHcCCCEEEEEE----ecCCCCCCc--hhHHHHHHHHHHHHHHhCCeeEEEEe
Confidence 6677888899999999865 445443333 34788888988988888876555543
No 445
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=20.62 E-value=4.6e+02 Score=21.35 Aligned_cols=46 Identities=20% Similarity=0.320 Sum_probs=32.4
Q ss_pred CCceeEEEe-ecCCCCCC-CChHHHHHHHHHHHHHHHhcCCCceEEEe
Q 019395 167 RPSLAAIEL-INEPLAPG-VALDTLKSYYKAGYDAVRKYTSTAYVIMS 212 (341)
Q Consensus 167 ~~~v~~~el-~NEP~~~~-~~~~~~~~~~~~~~~aIR~~~p~~~v~~~ 212 (341)
.|.++.+.+ .|...... .+.+.+..-++++++.||+..|+..|++.
T Consensus 67 ~pd~Vii~~G~ND~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~iil~ 114 (188)
T cd01827 67 NPNIVIIKLGTNDAKPQNWKYKDDFKKDYETMIDSFQALPSKPKIYIC 114 (188)
T ss_pred CCCEEEEEcccCCCCCCCCccHHHHHHHHHHHHHHHHHHCCCCeEEEE
Confidence 465555555 78765421 23567888999999999999988666554
No 446
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=20.60 E-value=6e+02 Score=22.46 Aligned_cols=98 Identities=17% Similarity=0.339 Sum_probs=53.3
Q ss_pred HHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCCccCC
Q 019395 66 EDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEW 145 (341)
Q Consensus 66 ~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~~w 145 (341)
+.++.+.+.||+++.+-++- .+ +..++.++.+-+.. -.++.+.+|.+.. |
T Consensus 91 ~~~~~~~~~G~~~~KiKvg~---------~~--~~d~~~v~~vr~~~-g~~~~l~vDan~~------------------~ 140 (265)
T cd03315 91 EEARRALEAGFRTFKLKVGR---------DP--ARDVAVVAALREAV-GDDAELRVDANRG------------------W 140 (265)
T ss_pred HHHHHHHHCCCCEEEEecCC---------CH--HHHHHHHHHHHHhc-CCCCEEEEeCCCC------------------c
Confidence 45556678899999997641 11 12234444433322 2368899997632 3
Q ss_pred chhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCceEEEeCC
Q 019395 146 GDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIMSNR 214 (341)
Q Consensus 146 ~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~v~~~~~ 214 (341)
. .+..+++.+.+.+ + +++.+-||..+ .++ +.+..+++.- ..+|..+..
T Consensus 141 ~---~~~a~~~~~~l~~-~-------~i~~iEeP~~~----~d~-----~~~~~l~~~~-~ipia~dE~ 188 (265)
T cd03315 141 T---PKQAIRALRALED-L-------GLDYVEQPLPA----DDL-----EGRAALARAT-DTPIMADES 188 (265)
T ss_pred C---HHHHHHHHHHHHh-c-------CCCEEECCCCc----ccH-----HHHHHHHhhC-CCCEEECCC
Confidence 2 3566677777754 1 24456788741 112 3334455443 356766653
No 447
>cd05800 PGM_like2 This PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily and is found in both archaea and bacteria. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four structural domains (subdomains) with a centrally located active site formed by four loops, one from each subdomain. All four subdomains are included in this alignment model.
Probab=20.60 E-value=6.5e+02 Score=24.45 Aligned_cols=80 Identities=18% Similarity=0.111 Sum_probs=43.0
Q ss_pred chHHHHHHHHH--HHHHcCCeEEEecCCCCCCCCCCCCCCCCCCccCCchhHHHHHHHHHHHHHHHhCCCCceeEEEeec
Q 019395 100 GSSKVLDNAFD--WAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELIN 177 (341)
Q Consensus 100 ~~l~~ld~~i~--~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~N 177 (341)
.+++.+.+.++ ..++.+++|++|.++..++ .++..+.++++- .+ ..+-+
T Consensus 155 ~Y~~~l~~~~~~~~i~~~~~kivvd~~~G~~~-------------------------~~~~~il~~lg~--~v--~~~~~ 205 (461)
T cd05800 155 DYLEALRSLVDLEAIREAGLKVVVDPMYGAGA-------------------------GYLEELLRGAGV--DV--EEIRA 205 (461)
T ss_pred HHHHHHHHHhChhhhhcCCceEEEeCCCCCcH-------------------------HHHHHHHHHcCC--CE--EEeeC
Confidence 34555555443 2235799999997764321 266677777754 23 23555
Q ss_pred CCCCC--C-CChHHHHHHHHHHHHHHHhcCCCceE
Q 019395 178 EPLAP--G-VALDTLKSYYKAGYDAVRKYTSTAYV 209 (341)
Q Consensus 178 EP~~~--~-~~~~~~~~~~~~~~~aIR~~~p~~~v 209 (341)
+|... . .+... .....++.+++++.+.+.-|
T Consensus 206 ~~dg~F~~~~p~p~-~~~l~~l~~~v~~~~ad~Gi 239 (461)
T cd05800 206 ERDPLFGGIPPEPI-EKNLGELAEAVKEGGADLGL 239 (461)
T ss_pred CcCCCCCCCCCCCC-HHHHHHHHHHHHhcCCCEEE
Confidence 66531 1 11111 34556677778776544333
No 448
>PRK15414 phosphomannomutase CpsG; Provisional
Probab=20.55 E-value=4.6e+02 Score=25.56 Aligned_cols=29 Identities=7% Similarity=0.021 Sum_probs=18.3
Q ss_pred cchHHHHHHHHHHHHHcCCeEEEecCCCC
Q 019395 99 GGSSKVLDNAFDWAEKYGVKVIVDLHAAP 127 (341)
Q Consensus 99 ~~~l~~ld~~i~~a~~~gi~vildlh~~~ 127 (341)
+.+++.+...++.....+++|++|.++..
T Consensus 153 ~~Yi~~l~~~id~~~~~~lkVvvD~~~G~ 181 (456)
T PRK15414 153 DAYVDHLFGYINVKNLTPLKLVINSGNGA 181 (456)
T ss_pred HHHHHHHHHhcccccCCCCEEEEECCCCc
Confidence 44556665555432236999999987653
No 449
>PRK09989 hypothetical protein; Provisional
Probab=20.51 E-value=5.8e+02 Score=22.33 Aligned_cols=95 Identities=14% Similarity=0.184 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCCCCCccCCc-hhHHHHHHHHHHHHHHHhCCCCceeEEEeecCC
Q 019395 101 SSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSATRDGFQEWG-DSNVADTVAVIDFLAARYANRPSLAAIELINEP 179 (341)
Q Consensus 101 ~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~~~~~~~w~-~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP 179 (341)
..+.++++|+.|++.|...|. +| +|... .+ .. ....+..++.++.+++..++....+++|.+|..
T Consensus 83 ~~~~l~~~i~~A~~lg~~~v~-v~--~g~~~----~~-------~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~l~~~ 148 (258)
T PRK09989 83 ARADIDLALEYALALNCEQVH-VM--AGVVP----AG-------EDAERYRAVFIDNLRYAADRFAPHGKRILVEALSPG 148 (258)
T ss_pred HHHHHHHHHHHHHHhCcCEEE-EC--ccCCC----CC-------CCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 467899999999999998664 22 22100 00 11 244566778888888888777777888988864
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhcCC-CceEEEeC
Q 019395 180 LAPGVALDTLKSYYKAGYDAVRKYTS-TAYVIMSN 213 (341)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~aIR~~~p-~~~v~~~~ 213 (341)
..+.. ...=...+.+.|+++++ +..+.+..
T Consensus 149 ~~~~~----~~~~~~~~~~ll~~v~~~~v~l~lD~ 179 (258)
T PRK09989 149 VKPHY----LFSSQYQALAIVEEVARDNVFIQLDT 179 (258)
T ss_pred CCCCC----ccCCHHHHHHHHHHcCCCCeEEEeeh
Confidence 32111 11123556778888875 44455543
No 450
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=20.48 E-value=1e+02 Score=29.19 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHcCCeEEEe-cCC
Q 019395 101 SSKVLDNAFDWAEKYGVKVIVD-LHA 125 (341)
Q Consensus 101 ~l~~ld~~i~~a~~~gi~vild-lh~ 125 (341)
.-+.|.++.+.|.+||+.||-| +|.
T Consensus 176 t~eeL~~i~elc~kh~v~VISDEIHa 201 (388)
T COG1168 176 TKEELRKIAELCLRHGVRVISDEIHA 201 (388)
T ss_pred cHHHHHHHHHHHHHcCCEEEeecccc
Confidence 3588999999999999999997 453
No 451
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=20.46 E-value=6.8e+02 Score=23.07 Aligned_cols=126 Identities=12% Similarity=0.044 Sum_probs=62.9
Q ss_pred ccCHHHHHHHHHCCCCEEEcCcccccccCCCC---CCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCC
Q 019395 62 YITDEDFKFLSSNGINAVRIPVGWWIANDPTP---PKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQNGNEHSAT 138 (341)
Q Consensus 62 ~~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~---~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~~~~~~~g~ 138 (341)
.++++.++.|+++|. .+.+.-....+... .........+..-++++.|++.||.+..++-...| .
T Consensus 112 ~lt~e~i~~Lk~ag~---~l~~~~et~~e~l~~~v~~~~~~~~~~~~l~~i~~a~~~Gi~~~~~~i~G~g---------E 179 (336)
T PRK06245 112 ILTREEMEKLKEVNA---SMGLMLEQTSPRLLNTVHRGSPGKDPELRLETIENAGKLKIPFTTGILIGIG---------E 179 (336)
T ss_pred CCCHHHHHHHHHhCC---CCCCCccccchhhHHhhccCCCCCCHHHHHHHHHHHHHcCCceeeeeeeECC---------C
Confidence 468999999999873 23322111000000 00011123445578899999999987555432111 0
Q ss_pred CCCccCCchhHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCC--CChHHHHHHHHHHHHHHHhcCCCc
Q 019395 139 RDGFQEWGDSNVADTVAVIDFLAARYANRPSLAAIELINEPLAPG--VALDTLKSYYKAGYDAVRKYTSTA 207 (341)
Q Consensus 139 ~~~~~~w~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~--~~~~~~~~~~~~~~~aIR~~~p~~ 207 (341)
. .......+..++.+..++++-..+..+-+.-+|..+- ..... ..-+.+++...|..-|+.
T Consensus 180 ------t-~ed~~~~l~~l~~l~~~~gg~~~~~~~~f~P~~~T~~~~~~~~s-~~e~l~~ia~~Rl~l~~~ 242 (336)
T PRK06245 180 ------T-WEDRAESLEAIAELHERYGHIQEVIIQNFSPKPGIPMENHPEPS-LEEMLRVVALARLILPPD 242 (336)
T ss_pred ------C-HHHHHHHHHHHHHHHHhhCCCcEEecCCCcCCCCCCcccCCCcC-HHHHHHHHHHHHHHCCCC
Confidence 0 1333445557777877776655554444555554311 11111 122344566666666543
No 452
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=20.45 E-value=1.1e+02 Score=28.36 Aligned_cols=62 Identities=16% Similarity=0.173 Sum_probs=43.7
Q ss_pred CHHHHHHHHHCCCCEEEcCcccccccCCCCCCCc-ccchHHHHHHHHHHHHHcCCe-EEEecCCCCC
Q 019395 64 TDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPF-VGGSSKVLDNAFDWAEKYGVK-VIVDLHAAPG 128 (341)
Q Consensus 64 ~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~-~~~~l~~ld~~i~~a~~~gi~-vildlh~~~g 128 (341)
.+...+.+|++|++-|.+++. ..++...... ..+.++.+-+-|+.|.+.|+. |=|+.-..+|
T Consensus 100 L~~~a~~Lk~AGl~rVNVSLD---sld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~kg 163 (322)
T COG2896 100 LARRAADLKEAGLDRVNVSLD---SLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLNTVLMKG 163 (322)
T ss_pred HHHHHHHHHHcCCcEEEeecc---cCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCCceEEEEEEecC
Confidence 467788999999999999884 2232111111 123478888888999999997 8888776654
No 453
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=20.36 E-value=3.6e+02 Score=24.61 Aligned_cols=57 Identities=33% Similarity=0.395 Sum_probs=42.4
Q ss_pred cCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCCC
Q 019395 63 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGS 129 (341)
Q Consensus 63 ~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~ 129 (341)
.+-+++...-++||++|=+-- +..|+ ++.++...++++.|+++|+-|=..|-+..|.
T Consensus 85 ~~~e~i~~Ai~~GftSVM~Dg---------S~l~~-eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ 141 (283)
T PRK07998 85 KTFEDVKQAVRAGFTSVMIDG---------AALPF-EENIAFTKEAVDFAKSYGVPVEAELGAILGK 141 (283)
T ss_pred CCHHHHHHHHHcCCCEEEEeC---------CCCCH-HHHHHHHHHHHHHHHHcCCEEEEEeccCCCc
Confidence 356677777788999988622 11244 4578999999999999999987888777543
No 454
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=20.30 E-value=7.8e+02 Score=23.68 Aligned_cols=64 Identities=14% Similarity=0.157 Sum_probs=38.3
Q ss_pred ccCHHHHHHHHHC--CCCEEEcCcccccccCCCCCCCcc-cchHHHHHHHHHHHHHc--CCeEEEec-CCCCC
Q 019395 62 YITDEDFKFLSSN--GINAVRIPVGWWIANDPTPPKPFV-GGSSKVLDNAFDWAEKY--GVKVIVDL-HAAPG 128 (341)
Q Consensus 62 ~~~e~d~~~i~~~--G~N~VRlpi~~~~~~~~~~~~~~~-~~~l~~ld~~i~~a~~~--gi~vildl-h~~~g 128 (341)
.++++-++.|++. |++.+-||+-- . .+.--.... .-..+.+.++|+.+++. |+.+..|+ .++||
T Consensus 218 ~i~~ell~~l~~~~~~~~~l~lglQS--g-sd~vLk~M~R~~~~~~~~~~i~~lr~~~pgi~i~~d~IvGfPG 287 (418)
T PRK14336 218 DISQKLIDAMAHLPKVCRSLSLPVQA--G-DDTILAAMRRGYTNQQYRELVERLKTAMPDISLQTDLIVGFPS 287 (418)
T ss_pred hcCHHHHHHHHhcCccCCceecCCCc--C-CHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCEEEEEEEEECCC
Confidence 4578888889885 47777766531 1 100000000 11357788899999998 99887775 34453
No 455
>KOG2331 consensus Predicted glycosylhydrolase [General function prediction only]
Probab=20.28 E-value=2.5e+02 Score=27.17 Aligned_cols=60 Identities=17% Similarity=0.048 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCceEEE
Q 019395 148 SNVADTVAVIDFLAARYANRPSLAAIELINEPLAPGVALDTLKSYYKAGYDAVRKYTSTAYVIM 211 (341)
Q Consensus 148 ~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~v~~ 211 (341)
+..+.+++.+.+|++.|+=+..++ .+=|-.. ......+.+|...+.+..+...|+.+|+-
T Consensus 150 es~~~~~e~L~~l~~~fgFdGWLi--NiEn~i~--~~~i~~l~~F~~~Lt~~~~~~~p~~~ViW 209 (526)
T KOG2331|consen 150 ESVEMTVERLVELARFFGFDGWLI--NIENKID--LAKIPNLIQFVSHLTKVLHSSVPGGLVIW 209 (526)
T ss_pred hhHHHHHHHHHHHHHHhCCceEEE--EeeeccC--hhhCccHHHHHHHHHHHHhhcCCCceEEE
Confidence 456777788888888875443332 2333332 23445788999999999999999877664
No 456
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=20.19 E-value=1.3e+02 Score=28.09 Aligned_cols=26 Identities=19% Similarity=0.210 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHcCCeEEEecCCC
Q 019395 101 SSKVLDNAFDWAEKYGVKVIVDLHAA 126 (341)
Q Consensus 101 ~l~~ld~~i~~a~~~gi~vildlh~~ 126 (341)
.+..++++.+.|+++|+.+++|--+.
T Consensus 144 ~~~~i~~I~~l~~~~g~~livD~~~~ 169 (363)
T TIGR02326 144 ILNPIEAVAKLAHRHGKVTIVDAMSS 169 (363)
T ss_pred ccCcHHHHHHHHHHcCCEEEEEcccc
Confidence 44558899999999999999997433
No 457
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=20.18 E-value=1.2e+02 Score=29.11 Aligned_cols=57 Identities=19% Similarity=0.327 Sum_probs=37.1
Q ss_pred ccCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCC
Q 019395 62 YITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAA 126 (341)
Q Consensus 62 ~~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~ 126 (341)
++.-.|++.+.+.+=. |+-+-| ++.|. +|+. ....+.++.+.|+++|+.|+||---.
T Consensus 146 ~vd~~~~~~~~~~i~~--~t~~V~--~ESPs--NPll--~v~DI~~l~~la~~~g~~vvVDnTf~ 202 (409)
T KOG0053|consen 146 FVDVDDLKKILKAIKE--NTKAVF--LESPS--NPLL--KVPDIEKLARLAHKYGFLVVVDNTFG 202 (409)
T ss_pred eechhhHHHHHHhhcc--CceEEE--EECCC--CCcc--ccccHHHHHHHHhhCCCEEEEeCCcC
Confidence 3456778888777666 443333 33343 3332 24557788889999999999996544
No 458
>PRK00915 2-isopropylmalate synthase; Validated
Probab=20.06 E-value=1.2e+02 Score=30.11 Aligned_cols=61 Identities=10% Similarity=-0.031 Sum_probs=39.5
Q ss_pred CHHHHHHHH----HCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecC
Q 019395 64 TDEDFKFLS----SNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLH 124 (341)
Q Consensus 64 ~e~d~~~i~----~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh 124 (341)
.++|++... +.|...|.+.++-+...-...-..-.++.++.+.+.|+.|+++|+.|.++.-
T Consensus 77 ~~~did~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~~e 141 (513)
T PRK00915 77 VKKDIDAAAEALKPAEAPRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFSAE 141 (513)
T ss_pred CHHHHHHHHHHhhcCCCCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 367777776 6777778776643222100000111245788899999999999999987754
No 459
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=20.02 E-value=2.1e+02 Score=25.97 Aligned_cols=58 Identities=24% Similarity=0.265 Sum_probs=44.5
Q ss_pred cCHHHHHHHHHCCCCEEEcCcccccccCCCCCCCcccchHHHHHHHHHHHHHcCCeEEEecCCCCCCC
Q 019395 63 ITDEDFKFLSSNGINAVRIPVGWWIANDPTPPKPFVGGSSKVLDNAFDWAEKYGVKVIVDLHAAPGSQ 130 (341)
Q Consensus 63 ~~e~d~~~i~~~G~N~VRlpi~~~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vildlh~~~g~~ 130 (341)
.+.+++...-+.||++|=+--+ ..|+ ++.++.-.++++.|++.|+.|=-.+-+..|..
T Consensus 80 ~~~~~i~~ai~~GftSVMiD~S---------~l~~-eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e 137 (276)
T cd00947 80 SSFELIKRAIRAGFSSVMIDGS---------HLPF-EENVAKTKEVVELAHAYGVSVEAELGRIGGEE 137 (276)
T ss_pred CCHHHHHHHHHhCCCEEEeCCC---------CCCH-HHHHHHHHHHHHHHHHcCCeEEEEEeeecCcc
Confidence 3567887778899999876332 1233 45789999999999999999999888876543
Done!