BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019396
(341 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VUV9|U520_DROME Putative U5 small nuclear ribonucleoprotein 200 kDa helicase
OS=Drosophila melanogaster GN=CG5931 PE=2 SV=4
Length = 2142
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 110/255 (43%), Gaps = 61/255 (23%)
Query: 10 GHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIA-RKVR 68
+GWL PAV +EL+Q + QA+ + QLPHF+ ++K+ +K+
Sbjct: 1936 SNGWLSPAVAAMELAQMVTQAM-----------WSKDSYLKQLPHFSPEIVKRCTEKKIE 1984
Query: 69 TFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMPSLTVEVTCETEGEEGIQEGDI 128
T ++ ++ +DR LL S ++ DV P+ +E+ E ++ I G
Sbjct: 1985 TVFDIMELEDEDRTRLLQ----LSDLQMADVARFCNRYPN--IELNYEVVDKDRINSGS- 2037
Query: 129 VTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWFLLADSVSNNVWFSQKVSFMDEPAAI 188
T+ V L+R + + G + AP++P +EE +W ++ D +N++ ++++ +
Sbjct: 2038 -TVNVVVQLEREDEVTGPVI-APFFPQKREEGWWVVIGDPKTNSLLSIKRLTLQQK---- 2091
Query: 189 TAASKAIEDTMEGSGATVKETSAAVREAAEKVRSGSRLVMGKIQAPAEGNYNLTCYCLCD 248
A VK AP+ G ++ T Y + D
Sbjct: 2092 ---------------AKVKLDFV---------------------APSPGKHDYTLYYMSD 2115
Query: 249 SWLGCDKRTNLKVKI 263
S+LGCD+ +++
Sbjct: 2116 SYLGCDQEYKFSIEV 2130
>sp|Q55CI8|HELCL_DICDI Activating signal cointegrator 1 complex subunit 3-like
OS=Dictyostelium discoideum GN=ascc3l PE=3 SV=1
Length = 2237
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/265 (23%), Positives = 109/265 (41%), Gaps = 68/265 (25%)
Query: 10 GHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIARK-VR 68
+ WL+PA+ +ELSQ I QA+ + + F QLPH + I I + +
Sbjct: 2012 SNSWLQPAIAAMELSQMITQAM-----------WDSDSVFKQLPHMNKRRIDAITSQGIE 2060
Query: 69 TFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMPSLTVEVTCETEGEEGIQEGDI 128
+ +L MSL D + + Q+ S E D +V M ++++ + + E+ + I
Sbjct: 2061 SVFDL--MSLDDNSRI--QLLDLSQQESND--LVQSFMKYPDIDISYQVQDEDDLHADSI 2114
Query: 129 VTIQAWVTLKRG---------NGLIGALPHAPYYPFHKEENFWFLLADSVSNNVWFSQKV 179
+T++ + G N I + APYYP K +W L+ DS +N++ +++
Sbjct: 2115 MTVEMVIERDLGDDEENPIEINDSINVV-SAPYYPKEKICGWWALIGDSKNNHLLAIKRI 2173
Query: 180 SFMDEPAAITAASKAIEDTMEGSGATVKETSAAVREAAEKVRSGSRLVMGKIQAPAEGNY 239
+F+ K+T V + PA G +
Sbjct: 2174 TFL------------------------KKTK----------------VKFEFPTPAVGKH 2193
Query: 240 NLTCYCLCDSWLGCDKRTNLKVKIL 264
L+ Y DS+ GCD+ L + IL
Sbjct: 2194 QLSLYLFSDSYNGCDQEHELNINIL 2218
>sp|Q9U2G0|U520_CAEEL Putative U5 small nuclear ribonucleoprotein 200 kDa helicase
OS=Caenorhabditis elegans GN=Y46G5A.4 PE=3 SV=1
Length = 2145
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 67/263 (25%), Positives = 113/263 (42%), Gaps = 74/263 (28%)
Query: 10 GHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFL-QLPHFTEAVIKKI-ARKV 67
+GWL PA+ +ELSQ + QA+ P+L QLPH + A++++ A++V
Sbjct: 1931 SNGWLSPAIHAMELSQMLTQAM------------YSNEPYLKQLPHCSAALLERAKAKEV 1978
Query: 68 RTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMPSLTVEVTCETEGEEGIQEGD 127
+ EL ++ DR+++L G E+ DV PS +EV E E D
Sbjct: 1979 TSVFELLELENDDRSDILQMEGA----ELADVARFCNHYPS--IEVATEL-------END 2025
Query: 128 IVT----IQAWVTLKRGNGLIGALPH--APYYP-FHKEENFWFLLADSVSNNVWFSQKVS 180
+VT + V+L+R N + G P AP +P KEE +W ++ DS SN + +++
Sbjct: 2026 VVTSNDNLMLAVSLERDNDIDGLAPPVVAPLFPQKRKEEGWWLVIGDSESNALLTIKRL- 2084
Query: 181 FMDEPAAITAASKAIEDTMEGSGATVKETSAAVREAAEKVRSGSRLVMGKIQAPAEGNYN 240
+ E S+ + A AP G++
Sbjct: 2085 ------------------------VINEKSSVQLDFA---------------APRPGHHK 2105
Query: 241 LTCYCLCDSWLGCDKRTNLKVKI 263
+ + DS+LG D+ ++ K+
Sbjct: 2106 FKLFFISDSYLGADQEFDVAFKV 2128
>sp|O75643|U520_HUMAN U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens
GN=SNRNP200 PE=1 SV=2
Length = 2136
Score = 65.5 bits (158), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 110/255 (43%), Gaps = 61/255 (23%)
Query: 10 GHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIARK-VR 68
+GWL PA+ +EL+Q + QA+ + QLPHFT IK+ K V
Sbjct: 1932 SNGWLSPALAAMELAQMVTQAM-----------WSKDSYLKQLPHFTSEHIKRCTDKGVE 1980
Query: 69 TFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMPSLTVEVTCETEGEEGIQEGDI 128
+ ++ +M ++R LL + +++ DV P+ +E++ E ++ I+ G
Sbjct: 1981 SVFDIMEMEDEERNALLQ----LTDSQIADVARFCNRYPN--IELSYEVVDKDSIRSGGP 2034
Query: 129 VTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWFLLADSVSNNVWFSQKVSFMDEPAAI 188
V + V L+R + G + AP +P +EE +W ++ D+ SN++ ++ +
Sbjct: 2035 VVV--LVQLEREEEVTGPVI-APLFPQKREEGWWVVIGDAKSNSLISIKR---------L 2082
Query: 189 TAASKAIEDTMEGSGATVKETSAAVREAAEKVRSGSRLVMGKIQAPAEGNYNLTCYCLCD 248
T KA KV+ APA G +N T Y + D
Sbjct: 2083 TLQQKA------------------------KVKLD-------FVAPATGAHNYTLYFMSD 2111
Query: 249 SWLGCDKRTNLKVKI 263
+++GCD+ V +
Sbjct: 2112 AYMGCDQEYKFSVDV 2126
>sp|Q8VHE0|SEC63_MOUSE Translocation protein SEC63 homolog OS=Mus musculus GN=Sec63 PE=1
SV=4
Length = 760
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 10/104 (9%)
Query: 35 SRKATGGSTEGTAPFLQLPHFTEAVIKKIAR----KVRTFQELRDMSLQDRAELLSQVGG 90
S+ A G + +P LQLPH E +++++ K++T Q+L + DR LL
Sbjct: 370 SQMAVQGLQQFKSPLLQLPHIEEDNLRRVSNHKKYKIKTIQDLVSLKESDRHSLLH---F 426
Query: 91 FSSTEVQDVEMVLQMMPSLTVEVTCET---EGEEGIQEGDIVTI 131
+ ++V VL P +T+++ + E I G +VT+
Sbjct: 427 LEDEKYEEVMAVLGSFPYVTMDIKSQVLDDEDSNNITVGSLVTV 470
>sp|Q9UGP8|SEC63_HUMAN Translocation protein SEC63 homolog OS=Homo sapiens GN=SEC63 PE=1
SV=2
Length = 760
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 10/104 (9%)
Query: 35 SRKATGGSTEGTAPFLQLPHFTEAVIKKIAR----KVRTFQELRDMSLQDRAELLSQVGG 90
S+ A G + +P LQLPH E +++++ K++T Q+L + DR LL
Sbjct: 370 SQMAVQGLQQFKSPLLQLPHIEEDNLRRVSNHKKYKIKTIQDLVSLKESDRHTLLH---F 426
Query: 91 FSSTEVQDVEMVLQMMPSLTVEVTCET---EGEEGIQEGDIVTI 131
+ ++V VL P +T+++ + E I G +VT+
Sbjct: 427 LEDEKYEEVMAVLGSFPYVTMDIKSQVLDDEDSNNITVGSLVTV 470
>sp|Q5R660|SEC63_PONAB Translocation protein SEC63 homolog OS=Pongo abelii GN=SEC63 PE=2
SV=1
Length = 761
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 10/104 (9%)
Query: 35 SRKATGGSTEGTAPFLQLPHFTEAVIKKIAR----KVRTFQELRDMSLQDRAELLSQVGG 90
S+ A G + +P LQLPH E +++++ K++T Q+L + DR LL
Sbjct: 370 SQMAVQGLQQFKSPLLQLPHIEEDNLRRVSNHKKYKIKTIQDLVSLKESDRHTLLH---F 426
Query: 91 FSSTEVQDVEMVLQMMPSLTVEVTCET---EGEEGIQEGDIVTI 131
+ ++V VL P +T+++ + E I G +VT+
Sbjct: 427 LEDEKYEEVMAVLGSFPYVTMDIKSQVLDDEDSNNITVGSLVTV 470
>sp|Q9UT24|BRR2_SCHPO Pre-mRNA-splicing factor brr2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=brr2 PE=1 SV=1
Length = 2176
Score = 37.7 bits (86), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 49/178 (27%)
Query: 7 TAQGHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIARK 66
T G L + +E+SQ + QA+ + +P Q+P+F +A+I++ ++
Sbjct: 1965 TLSSEGHLIACIRPMEMSQMVTQAL-----------WDRDSPLKQIPYFDDALIERCNKE 2013
Query: 67 -VRTFQELRDMSLQDRAELL-------SQVGGFSST--------EVQDVEMVLQMMPS-L 109
V ++ D+ + R ELL ++ F + E++D E V PS L
Sbjct: 2014 GVHDVFDIIDLDDEKRTELLHMDNAHLAKCAEFINKYPDIDIDFEIEDSEDVHANSPSVL 2073
Query: 110 TVEVTCETEGEEGIQEGDIVTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWFLLAD 167
V++T E E +E E D I APY+P K E++W +++D
Sbjct: 2074 IVQLTRELEEDE---EVDTTVI------------------APYFPAQKTEHWWLVISD 2110
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.128 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 127,557,660
Number of Sequences: 539616
Number of extensions: 5527250
Number of successful extensions: 75095
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 442
Number of HSP's that attempted gapping in prelim test: 47520
Number of HSP's gapped (non-prelim): 14980
length of query: 341
length of database: 191,569,459
effective HSP length: 118
effective length of query: 223
effective length of database: 127,894,771
effective search space: 28520533933
effective search space used: 28520533933
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)