Query 019396
Match_columns 341
No_of_seqs 181 out of 708
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 15:26:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019396.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019396hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3im1_A Protein SNU246, PRE-mRN 100.0 8.5E-45 2.9E-49 351.2 24.3 201 5-264 127-328 (328)
2 2q0z_X Protein Pro2281; SEC63, 100.0 2E-43 6.9E-48 343.2 26.8 202 6-267 131-333 (339)
3 4f92_B U5 small nuclear ribonu 100.0 2.9E-33 9.8E-38 318.1 24.1 198 5-262 1526-1724(1724)
4 4f92_B U5 small nuclear ribonu 99.8 2.7E-20 9.1E-25 212.1 22.4 202 5-274 695-898 (1724)
5 2p6r_A Afuhel308 helicase; pro 98.5 1.5E-08 5.2E-13 105.7 1.9 87 5-114 605-692 (702)
6 2zj8_A DNA helicase, putative 98.5 8.3E-08 2.8E-12 100.5 6.8 90 4-108 614-704 (720)
7 2va8_A SSO2462, SKI2-type heli 98.2 1E-06 3.6E-11 91.9 6.3 88 4-109 625-714 (715)
8 1wcn_A Transcription elongatio 94.8 0.035 1.2E-06 41.7 4.7 57 46-106 6-63 (70)
9 2kz3_A Putative uncharacterize 90.6 0.62 2.1E-05 36.0 6.3 51 51-105 8-59 (83)
10 1z00_B DNA repair endonuclease 87.5 0.71 2.4E-05 35.7 4.7 53 46-104 17-70 (84)
11 2a1j_A DNA repair endonuclease 87.3 0.9 3.1E-05 33.0 4.9 54 46-105 3-57 (63)
12 2i1q_A DNA repair and recombin 85.0 1.2 4E-05 41.5 5.7 55 47-105 3-58 (322)
13 2ca6_A RAN GTPase-activating p 80.8 0.41 1.4E-05 45.1 0.7 6 246-251 310-315 (386)
14 2lpe_A Kinase suppressor of RA 80.5 3.2 0.00011 35.4 6.1 59 46-106 77-144 (149)
15 1pzn_A RAD51, DNA repair and r 78.5 4.3 0.00015 38.6 7.1 56 46-105 34-90 (349)
16 2ca6_A RAN GTPase-activating p 77.1 0.56 1.9E-05 44.1 0.5 12 241-252 276-287 (386)
17 1z3e_B DNA-directed RNA polyme 74.6 6.1 0.00021 29.6 5.6 55 47-106 9-64 (73)
18 3k4g_A DNA-directed RNA polyme 70.4 7.5 0.00026 30.2 5.3 56 47-107 12-68 (86)
19 1kft_A UVRC, excinuclease ABC 67.8 4.3 0.00015 30.0 3.4 55 46-104 23-77 (78)
20 2z43_A DNA repair and recombin 67.6 1.1 3.8E-05 41.9 0.0 57 45-105 10-67 (324)
21 1u9l_A Transcription elongatio 67.5 2.9 9.8E-05 31.2 2.3 55 48-106 7-62 (70)
22 3gfk_B DNA-directed RNA polyme 63.9 6.5 0.00022 30.0 3.7 55 47-106 16-71 (79)
23 2a1j_B DNA excision repair pro 63.8 11 0.00037 28.7 5.1 54 47-104 32-85 (91)
24 1z00_A DNA excision repair pro 63.0 11 0.00037 28.5 4.9 55 47-105 19-73 (89)
25 1b22_A DNA repair protein RAD5 61.3 2.3 7.9E-05 34.7 0.8 57 47-107 23-82 (114)
26 1x2i_A HEF helicase/nuclease; 60.0 11 0.00037 27.0 4.3 54 48-105 15-68 (75)
27 3mab_A Uncharacterized protein 52.8 13 0.00045 29.1 3.8 36 46-81 3-39 (93)
28 1ci4_A Protein (barrier-TO-aut 52.8 42 0.0014 26.2 6.6 62 45-106 16-84 (89)
29 4dez_A POL IV 1, DNA polymeras 51.1 35 0.0012 32.1 7.4 56 47-108 178-234 (356)
30 2bgw_A XPF endonuclease; hydro 50.7 16 0.00055 32.1 4.6 54 48-105 163-216 (219)
31 3bq0_A POL IV, DBH, DNA polyme 50.6 17 0.00059 34.3 5.1 58 47-110 179-237 (354)
32 1coo_A RNA polymerase alpha su 50.2 12 0.00042 29.6 3.3 54 48-106 25-79 (98)
33 1jx4_A DNA polymerase IV (fami 50.2 19 0.00064 34.0 5.2 58 47-110 178-236 (352)
34 3lda_A DNA repair protein RAD5 48.2 17 0.00056 35.4 4.6 55 47-105 81-138 (400)
35 3gqc_A DNA repair protein REV1 42.1 27 0.00091 35.2 5.1 54 47-106 315-369 (504)
36 3bqs_A Uncharacterized protein 41.5 19 0.00066 28.0 3.2 36 46-81 3-39 (93)
37 1im4_A DBH; DNA polymerase PAL 39.7 10 0.00035 33.8 1.5 35 47-81 184-219 (221)
38 4f4y_A POL IV, DNA polymerase 38.9 21 0.00072 34.1 3.6 57 47-109 179-236 (362)
39 3osn_A DNA polymerase IOTA; ho 38.2 62 0.0021 31.5 7.0 54 48-107 235-289 (420)
40 1v5w_A DMC1, meiotic recombina 35.2 8 0.00027 36.4 0.0 53 48-104 26-81 (343)
41 2dkz_A Hypothetical protein LO 34.7 91 0.0031 24.0 5.9 51 52-106 29-79 (84)
42 2yrl_A KIAA1837 protein; PKD d 34.3 94 0.0032 23.9 6.2 37 229-267 61-97 (102)
43 2wnv_B C1Q chain B, complement 32.8 51 0.0017 26.8 4.6 21 229-249 41-61 (136)
44 2wnv_A C1Q chain A, complement 29.7 39 0.0013 27.4 3.4 20 229-248 38-57 (134)
45 2hr0_A Complement C3 beta chai 28.6 3.2E+02 0.011 27.5 10.7 44 123-181 117-160 (645)
46 3c1y_A DNA integrity scanning 27.7 34 0.0012 33.3 3.0 55 48-106 316-370 (377)
47 2zd7_A VPS75, vacuolar protein 27.0 14 0.00049 34.0 0.2 7 150-156 113-119 (264)
48 2ayu_A Nucleosome assembly pro 26.8 12 0.0004 37.1 -0.4 7 150-156 240-246 (417)
49 3arc_U Photosystem II 12 kDa e 26.7 41 0.0014 26.3 2.8 48 46-105 25-74 (97)
50 2wnv_C C1Q chain C, complement 26.2 46 0.0016 26.9 3.2 21 229-249 42-62 (131)
51 1skn_P DNA-binding domain of S 26.1 97 0.0033 24.2 4.8 35 67-102 30-64 (92)
52 4acq_A Alpha-2-macroglobulin; 25.0 2.9E+02 0.0098 31.3 10.3 18 162-179 141-158 (1451)
53 1mg7_A Early switch protein XO 23.6 86 0.0029 30.3 4.9 54 227-280 334-387 (417)
54 1s5l_U Photosystem II 12 kDa e 23.5 79 0.0027 26.4 4.1 49 46-106 62-112 (134)
55 2r5o_A Putative ATP binding co 23.5 99 0.0034 26.3 5.0 41 226-266 125-171 (188)
56 2vzp_A Aocbm35, EXO-beta-D-glu 22.7 90 0.0031 24.5 4.3 34 226-261 40-73 (127)
57 3c65_A Uvrabc system protein C 22.5 18 0.00063 32.7 0.0 53 46-103 172-224 (226)
58 1vq8_Y 50S ribosomal protein L 21.4 20 0.00068 32.7 0.0 56 45-104 13-69 (241)
59 3isy_A Bsupi, intracellular pr 21.0 3.3E+02 0.011 21.9 9.2 43 125-175 16-58 (120)
60 3jqw_A COLH protein, collagena 20.9 1.2E+02 0.0041 24.5 4.7 23 226-248 84-106 (121)
61 2ayu_A Nucleosome assembly pro 20.6 11 0.00039 37.1 -1.9 6 80-85 134-139 (417)
62 1t94_A Polymerase (DNA directe 20.4 1.8E+02 0.006 28.4 6.7 57 47-110 282-339 (459)
63 2nrt_A Uvrabc system protein C 20.1 87 0.003 28.1 4.0 50 47-102 168-218 (220)
64 4fp9_B Mterf domain-containing 20.1 22 0.00075 33.9 0.0 32 281-312 304-335 (335)
65 4ecq_A DNA polymerase ETA; tra 20.1 86 0.0029 30.5 4.3 55 47-107 253-309 (435)
No 1
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=100.00 E-value=8.5e-45 Score=351.18 Aligned_cols=201 Identities=23% Similarity=0.468 Sum_probs=184.4
Q ss_pred cchhhccCCHHHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCcccCCCCCHHHHHHHhc-ccCCHHHHHcCCHHHHHH
Q 019396 5 PRTAQGHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIAR-KVRTFQELRDMSLQDRAE 83 (341)
Q Consensus 5 ~~~a~~~gwL~~al~~m~L~QmIvQA~W~~~~~~~~~~~d~~spLlQLPh~~~~~v~kl~~-~v~tl~~L~~m~~~er~~ 83 (341)
-..++.+||++ ++++|+|+|||+||+|+ .++||+|||||+.+.++++.+ ++.++++|.+|++++++.
T Consensus 127 ~di~~~~g~~~-~~~~l~L~q~i~q~~w~-----------~~~pL~Qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~e~~~ 194 (328)
T 3im1_A 127 VDILSANGYLN-ATTAMDLAQMLIQGVWD-----------VDNPLRQIPHFNNKILEKCKEINVETVYDIMALEDEERDE 194 (328)
T ss_dssp HHHHHHTTBTT-HHHHHHHHHHHHHTSCT-----------TSCGGGGSTTCCHHHHHHHHHTTCCSHHHHHHSCHHHHHH
T ss_pred HHHHHcCCcHH-HHHHHHHHHHHHhhcCC-----------CCCceeCCCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHHh
Confidence 34678999999 99999999999999998 789999999999999999987 899999999999999999
Q ss_pred HHhhccCCChHHHHHHHHHHhcCCceeEEEEEEecCCccccCCCeEEEEEeeeeeccCCCCCCCccCCCCCCCCcccEEE
Q 019396 84 LLSQVGGFSSTEVQDVEMVLQMMPSLTVEVTCETEGEEGIQEGDIVTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWF 163 (341)
Q Consensus 84 lL~~~~~ls~~~~~~v~~v~~~~P~I~I~~~~~v~gE~~It~g~~vtl~~~V~L~R~n~~~~~~~~aP~FP~~K~E~Wwv 163 (341)
+|+ +++.+++++.++|++||.|+|+ ++|.|+++|++|+.++|+ |+|+|.+......+||||||+.|.|+|||
T Consensus 195 ll~----~~~~~~~~v~~~~~~~P~l~v~--~~v~~~~~i~~~~~~~l~--v~l~~~~~~~~~~~~ap~fp~~k~e~ww~ 266 (328)
T 3im1_A 195 ILT----LTDSQLAQVAAFVNNYPNVELT--YSLNNSDSLISGVKQKIT--IQLTRDVEPENLQVTSEKYPFDKLESWWL 266 (328)
T ss_dssp HCC----CCHHHHHHHHHHHHHCCCEEEE--EEETTGGGCCTTSEEEEE--EEEEESSCCSCCBCCCSSCCBCCBCCEEE
T ss_pred HhC----CCHHHHHHHHHHHHhCCCEEEE--EEecCCCcccCCCeEEEE--EEEEECCCCCCCcEECCCCCCCccCCEEE
Confidence 875 8999999999999999999965 677888899999999999 99999876666789999999999999999
Q ss_pred EEEECCCCeEEEEeeeeeccchhHHhhhhhhhhhhhcCCCCccchhhHHHHHHHHhhhcCceeEEEEEEcCCCCceeEEE
Q 019396 164 LLADSVSNNVWFSQKVSFMDEPAAITAASKAIEDTMEGSGATVKETSAAVREAAEKVRSGSRLVMGKIQAPAEGNYNLTC 243 (341)
Q Consensus 164 vlgD~~~n~Il~~krvs~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~k~~~~~v~l~F~aP~~G~~~l~l 243 (341)
||||+++|+|+++||+++.+. .+.++++|++|.+|+|+|+|
T Consensus 267 ~v~d~~~~~l~~~kr~~~~~~---------------------------------------~~~~~~~f~~p~~g~~~~~v 307 (328)
T 3im1_A 267 VLGEVSKKELYAIKKVTLNKE---------------------------------------TQQYELEFDTPTSGKHNLTI 307 (328)
T ss_dssp EEEEGGGTEEEEEEEECCCSS---------------------------------------EEEEEEEEECCCSEEEEEEE
T ss_pred EEEECCCCeEEEEeeeccccc---------------------------------------ceEEEEEEEcCCCCcEEEEE
Confidence 999999999999999988541 14588999999889999999
Q ss_pred EEEcCCCcccceEEEEEEEee
Q 019396 244 YCLCDSWLGCDKRTNLKVKIL 264 (341)
Q Consensus 244 ~v~SDsYlG~D~~~~i~l~V~ 264 (341)
+|+||+|+|||++++|+|+|.
T Consensus 308 ~~vsD~ylG~d~~~~~~l~V~ 328 (328)
T 3im1_A 308 WCVCDSYLDADKELSFEINVK 328 (328)
T ss_dssp EEEESSCSSCCEEEEEEEEEC
T ss_pred EEEecCCcceeEEEEEEEEeC
Confidence 999999999999999999984
No 2
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=100.00 E-value=2e-43 Score=343.15 Aligned_cols=202 Identities=27% Similarity=0.508 Sum_probs=183.7
Q ss_pred chhhccCCHHHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCcccCCCCCHHHHHHHhc-ccCCHHHHHcCCHHHHHHH
Q 019396 6 RTAQGHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIAR-KVRTFQELRDMSLQDRAEL 84 (341)
Q Consensus 6 ~~a~~~gwL~~al~~m~L~QmIvQA~W~~~~~~~~~~~d~~spLlQLPh~~~~~v~kl~~-~v~tl~~L~~m~~~er~~l 84 (341)
..++.+||+.+++++|+|+|||+||+|+ .++||+|||||+.+.++++.+ ++.++.+|++|++.+++.+
T Consensus 131 di~~~~g~~~~~~~~l~L~q~i~q~~w~-----------~~~pL~Qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~e~~~l 199 (339)
T 2q0z_X 131 DVLSSNGWLSPALAAMELAQMVTQAMWS-----------KDSYLKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNAL 199 (339)
T ss_dssp HHHHHTTBHHHHHHHHHHHHHHHHTCCT-----------TSCGGGGSTTCCHHHHHHHHHTTCCSHHHHHHSCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhcCC-----------CCCceecCCCCCHHHHHHHHhcCCCCHHHHHhCCHHHHHHH
Confidence 4678899999999999999999999998 789999999999999999987 8999999999999999999
Q ss_pred HhhccCCChHHHHHHHHHHhcCCceeEEEEEEecCCccccCCCeEEEEEeeeeeccCCCCCCCccCCCCCCCCcccEEEE
Q 019396 85 LSQVGGFSSTEVQDVEMVLQMMPSLTVEVTCETEGEEGIQEGDIVTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWFL 164 (341)
Q Consensus 85 L~~~~~ls~~~~~~v~~v~~~~P~I~I~~~~~v~gE~~It~g~~vtl~~~V~L~R~n~~~~~~~~aP~FP~~K~E~Wwvv 164 (341)
|+ +++.+++++.+++++||.|+|+ ++|.+++.|++|+.++|+ |+|+|.+. ....+|||+||+.|.|+||||
T Consensus 200 l~----l~~~~~~~i~~~~~~~P~l~v~--~~v~~~~~i~~~~~~~l~--v~l~~~~~-~~~~v~aP~fp~~k~e~wwi~ 270 (339)
T 2q0z_X 200 LQ----LTDSQIADVARFCNRYPNIELS--YEVVDKDSIRSGGPVVVL--VQLEREEE-VTGPVIAPLFPQKREEGWWVV 270 (339)
T ss_dssp HC----CCHHHHHHHHHHHTTSCCEEEE--EEETTGGGCBTTSEEEEE--EEEEECSS-CCSSCCCTTCSSCCCCCEEEE
T ss_pred HC----CCHHHHHHHHHHHHhCCcEEEE--EEEccCccccCCCcEEEE--EEEEECCC-CCCceeCCCCCCCCCCcEEEE
Confidence 86 8899999999999999999865 667888889999999999 88888753 345899999999999999999
Q ss_pred EEECCCCeEEEEeeeeeccchhHHhhhhhhhhhhhcCCCCccchhhHHHHHHHHhhhcCceeEEEEEEcCCCCceeEEEE
Q 019396 165 LADSVSNNVWFSQKVSFMDEPAAITAASKAIEDTMEGSGATVKETSAAVREAAEKVRSGSRLVMGKIQAPAEGNYNLTCY 244 (341)
Q Consensus 165 lgD~~~n~Il~~krvs~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~k~~~~~v~l~F~aP~~G~~~l~l~ 244 (341)
|+|+++|+|++++|+++.++ ..++++|++|.+|+++|+|+
T Consensus 271 v~d~~~~~ll~~~r~~l~~~----------------------------------------~~~~l~f~~P~~g~~~~~v~ 310 (339)
T 2q0z_X 271 IGDAKSNSLISIKRLTLQQK----------------------------------------AKVKLDFVAPATGAHNYTLY 310 (339)
T ss_dssp EEETTTTEEEEEEEECCSSE----------------------------------------EEEEEEEECCSSEEEEEEEE
T ss_pred EEECCCCEEEEEEEEecccc----------------------------------------eEEEEEEECCCCCCeeEEEE
Confidence 99999999999999987541 24679999999999999999
Q ss_pred EEcCCCcccceEEEEEEEeeccC
Q 019396 245 CLCDSWLGCDKRTNLKVKILKRT 267 (341)
Q Consensus 245 v~SDsYlG~D~~~~i~l~V~~~~ 267 (341)
++||+|+|||++++|+|+|.++.
T Consensus 311 ~vSD~ylG~D~~~~i~~~v~~~~ 333 (339)
T 2q0z_X 311 FMSDAYMGCDQEYKFSVDVKEAE 333 (339)
T ss_dssp EEESSCSSCCEEEEEEEEEBCC-
T ss_pred EEcccccCcceEEEEEEEEecCc
Confidence 99999999999999999998654
No 3
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=2.9e-33 Score=318.11 Aligned_cols=198 Identities=28% Similarity=0.511 Sum_probs=179.0
Q ss_pred cchhhccCCHHHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCcccCCCCCHHHHHHHhc-ccCCHHHHHcCCHHHHHH
Q 019396 5 PRTAQGHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIAR-KVRTFQELRDMSLQDRAE 83 (341)
Q Consensus 5 ~~~a~~~gwL~~al~~m~L~QmIvQA~W~~~~~~~~~~~d~~spLlQLPh~~~~~v~kl~~-~v~tl~~L~~m~~~er~~ 83 (341)
...+...||+.+++.+|+|+|||.||+|. +.+||+|||||+...+++|.. +++|+.+|.++++.++..
T Consensus 1526 ~d~~~~~g~~~~~~~~~~l~q~l~~~~w~-----------~~~~L~qip~i~~~~ar~l~~~gi~t~~dl~~~~~~~~~~ 1594 (1724)
T 4f92_B 1526 VDVLSSNGWLSPALAAMELAQMVTQAMWS-----------KDSYLKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNA 1594 (1724)
T ss_dssp HHHHHHTTBHHHHHHHHHHHHHHHTTCCT-----------TSCGGGGSTTCCHHHHHHHHHHTCCSHHHHHSSCHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHhCCCc-----------CCcCEecCCCCCHHHHHHHHHCCCCCHHHHHhCCHHHHHH
Confidence 35678999999999999999999999998 789999999999999999988 999999999999999998
Q ss_pred HHhhccCCChHHHHHHHHHHhcCCceeEEEEEEecCCccccCCCeEEEEEeeeeeccCCCCCCCccCCCCCCCCcccEEE
Q 019396 84 LLSQVGGFSSTEVQDVEMVLQMMPSLTVEVTCETEGEEGIQEGDIVTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWF 163 (341)
Q Consensus 84 lL~~~~~ls~~~~~~v~~v~~~~P~I~I~~~~~v~gE~~It~g~~vtl~~~V~L~R~n~~~~~~~~aP~FP~~K~E~Wwv 163 (341)
+|+ +++.++.++.++|++||+|+|+ +++.+.+.+..|..+++. |+|+|.+.. ...+|||+||+.|.|+||+
T Consensus 1595 ll~----~~~~~~~~i~~~~~~~P~i~~~--~~~~~~~~~~~~~~~~~~--v~~~~~~~~-~~~~~~~~~p~~k~e~w~~ 1665 (1724)
T 4f92_B 1595 LLQ----LTDSQIADVARFCNRYPNIELS--YEVVDKDSIRSGGPVVVL--VQLEREEEV-TGPVIAPLFPQKREEGWWV 1665 (1724)
T ss_dssp SSC----CCHHHHHHHHHHHHHSCCEEEE--EEEETSSSCCTTSEEEEE--EEEEESSCC-CSCCCCTTSCSCCCCCEEE
T ss_pred HHC----CChHHHHHHHHHHHhCCceEEE--EEEecCccccCCCeEEEE--EEEEecCCC-CCeeecCCCCCCCccCEEE
Confidence 876 8999999999999999999965 556677778999999999 999997643 3478999999999999999
Q ss_pred EEEECCCCeEEEEeeeeeccchhHHhhhhhhhhhhhcCCCCccchhhHHHHHHHHhhhcCceeEEEEEEcCCCCceeEEE
Q 019396 164 LLADSVSNNVWFSQKVSFMDEPAAITAASKAIEDTMEGSGATVKETSAAVREAAEKVRSGSRLVMGKIQAPAEGNYNLTC 243 (341)
Q Consensus 164 vlgD~~~n~Il~~krvs~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~k~~~~~v~l~F~aP~~G~~~l~l 243 (341)
+|||.++|+|+++||+++.+. ..+++.|.+|.+|.+.|+|
T Consensus 1666 vvg~~~~~~l~~~kr~~~~~~----------------------------------------~~~~l~f~~p~~g~~~~~~ 1705 (1724)
T 4f92_B 1666 VIGDAKSNSLISIKRLTLQQK----------------------------------------AKVKLDFVAPATGAHNYTL 1705 (1724)
T ss_dssp EEEETTTTEEEEEEEECCSSE----------------------------------------EEEEEEEECCSSSCEEEEE
T ss_pred EEEECCCCeEEEEEEEecCCC----------------------------------------ceEEEEEEeCCCCceeEEE
Confidence 999999999999999988541 2477999999999999999
Q ss_pred EEEcCCCcccceEEEEEEE
Q 019396 244 YCLCDSWLGCDKRTNLKVK 262 (341)
Q Consensus 244 ~v~SDsYlG~D~~~~i~l~ 262 (341)
|||||||+||||++.+.++
T Consensus 1706 ~~~~d~y~g~d~~~~~~~~ 1724 (1724)
T 4f92_B 1706 YFMSDAYMGCDQEYKFSVD 1724 (1724)
T ss_dssp EEEESSCSSCCEEEEEEEC
T ss_pred EEEecCccccceeEEEecC
Confidence 9999999999999998863
No 4
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.85 E-value=2.7e-20 Score=212.12 Aligned_cols=202 Identities=17% Similarity=0.265 Sum_probs=168.1
Q ss_pred cchhhccCCHHHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCcccCCCCCHHHHHHHhcccCCHHHHHcCCHHHHHHH
Q 019396 5 PRTAQGHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIARKVRTFQELRDMSLQDRAEL 84 (341)
Q Consensus 5 ~~~a~~~gwL~~al~~m~L~QmIvQA~W~~~~~~~~~~~d~~spLlQLPh~~~~~v~kl~~~v~tl~~L~~m~~~er~~l 84 (341)
-+.+..+||...+..++.|+|||.+++|. ..+||+|||++....++++.++-.++.+|.+|++.+++.+
T Consensus 695 ~ei~~~~~~~~~~~~~l~l~k~i~~~~w~-----------~~~~L~q~~~i~~~~~~~l~~~~~~~~~l~~~~~~~l~~~ 763 (1724)
T 4f92_B 695 FEIVLNRGWAQLTDKTLNLCKMIDKRMWQ-----------SMCPLRQFRKLPEEVVKKIEKKNFPFERLYDLNHNEIGEL 763 (1724)
T ss_dssp HHHHHHTTBHHHHHHHHHHHHHHHHTSCT-----------TSCGGGGSTTSCHHHHHHHHTSSCCGGGGGGCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhCCCC-----------CCCceecCCCCCHHHHHHHHhcCCCHHHHHhCCHHHHHHH
Confidence 34678899999999999999999999998 6899999999999999999984449999999999999999
Q ss_pred HhhccCCChHHHHHHHHHHhcCCceeEEEEEEecCCccccCCCeEEEEEeeeeeccCCCCCCCccCCCCCCCCcccEEEE
Q 019396 85 LSQVGGFSSTEVQDVEMVLQMMPSLTVEVTCETEGEEGIQEGDIVTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWFL 164 (341)
Q Consensus 85 L~~~~~ls~~~~~~v~~v~~~~P~I~I~~~~~v~gE~~It~g~~vtl~~~V~L~R~n~~~~~~~~aP~FP~~K~E~Wwvv 164 (341)
+++ +.....+.+.+++||.+++++.+++ |+. +.+++. +++++. +.|.++++. +.|+||+|
T Consensus 764 ~~~-----~~~g~~i~~~~~~~P~~~~~~~~~p-----~~~-~~~~~~--~~~~~~------~~w~~~~h~-~~~~~~~~ 823 (1724)
T 4f92_B 764 IRM-----PKMGKTIHKYVHLFPKLELSVHLQP-----ITR-STLKVE--LTITPD------FQWDEKVHG-SSEAFWIL 823 (1724)
T ss_dssp HTC-----STTHHHHHHHHTTSCCEEEEEEEEE-----SSS-SEEEEE--EEEEEC------SCCCTTTTT-TEEEEEEE
T ss_pred HCC-----chHHHHHHHHHHHCCCceEEEEEEe-----cCC-ceEEEE--EEEeec------cccchhhcC-CceeEEEE
Confidence 872 5678999999999999999888774 665 467777 666642 556666665 67999999
Q ss_pred EEECCCCeEEEEeeeeeccchhHHhhhhhhhhhhhcCCCCccchhhHHHHHHHHhhhcCceeEEEEEEcC--CCCceeEE
Q 019396 165 LADSVSNNVWFSQKVSFMDEPAAITAASKAIEDTMEGSGATVKETSAAVREAAEKVRSGSRLVMGKIQAP--AEGNYNLT 242 (341)
Q Consensus 165 lgD~~~n~Il~~krvs~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~k~~~~~v~l~F~aP--~~G~~~l~ 242 (341)
|+|.+++.|++++++.+.++. +. ....+.|++| .|.+.+|+
T Consensus 824 v~d~~~~~i~~~~~~~~~~~~---------~~----------------------------~~~~~~~~~p~~~~~p~~~~ 866 (1724)
T 4f92_B 824 VEDVDSEVILHHEYFLLKAKY---------AQ----------------------------DEHLITFFVPVFEPLPPQYF 866 (1724)
T ss_dssp EECTTSCBEEEEEEEEEEGGG---------TT----------------------------SCEEEEEEEECCSSCCSEEE
T ss_pred EEecCCCeEEEEEEEEeeeec---------cC----------------------------CceEEEEEEECCCCCCCeEE
Confidence 999999999999999987621 00 1244788888 58889999
Q ss_pred EEEEcCCCcccceEEEEEEEeeccCccCCCCc
Q 019396 243 CYCLCDSWLGCDKRTNLKVKILKRTRAGTRGG 274 (341)
Q Consensus 243 l~v~SDsYlG~D~~~~i~l~V~~~~~~~~~~~ 274 (341)
|+++||.|+||+..++|.|+..-.|...+..+
T Consensus 867 i~~~sd~w~~~~~~~~~~~~~~~~p~~~~~~t 898 (1724)
T 4f92_B 867 IRVVSDRWLSCETQLPVSFRHLILPEKYPPPT 898 (1724)
T ss_dssp EEEEESSSTTCEEEEEEECTTCCCCCCCCCCC
T ss_pred EEEEEccccCCCceeeeccccccCCCCCCCCC
Confidence 99999999999999999998777665444333
No 5
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=98.55 E-value=1.5e-08 Score=105.72 Aligned_cols=87 Identities=18% Similarity=0.219 Sum_probs=73.3
Q ss_pred cchhhccCCHHHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCcccCCCCCHHHHHHHhc-ccCCHHHHHcCCHHHHHH
Q 019396 5 PRTAQGHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIAR-KVRTFQELRDMSLQDRAE 83 (341)
Q Consensus 5 ~~~a~~~gwL~~al~~m~L~QmIvQA~W~~~~~~~~~~~d~~spLlQLPh~~~~~v~kl~~-~v~tl~~L~~m~~~er~~ 83 (341)
.+.|...||. .+++|+|||.||+|. ..+||+|||||+...++++.+ +++|+.+|.+++ .++..
T Consensus 605 ~~i~~~~g~~----~l~~l~~ri~~gv~~-----------~~~~L~qlp~v~~~~ar~l~~~g~~s~~~l~~~~-~~l~~ 668 (702)
T 2p6r_A 605 NRIAEEVGNT----SVSGLTERIKHGVKE-----------ELLELVRIRHIGRVRARKLYNAGIRNAEDIVRHR-EKVAS 668 (702)
T ss_dssp HHHHHHTTCC----SSTTHHHHHHHTCCG-----------GGHHHHTSTTCCHHHHHHHHTTTCCSHHHHHHTH-HHHHH
T ss_pred HHHHHHcCHH----HHHHHHHHHHcCCCc-----------chHhhhcCCCCCHHHHHHHHHcCCCCHHHHHhhh-HHHHH
Confidence 4567889997 788999999999998 789999999999999999988 899999999999 88887
Q ss_pred HHhhccCCChHHHHHHHHHHhcCCceeEEEE
Q 019396 84 LLSQVGGFSSTEVQDVEMVLQMMPSLTVEVT 114 (341)
Q Consensus 84 lL~~~~~ls~~~~~~v~~v~~~~P~I~I~~~ 114 (341)
+|+ +..++.+.+.+. +|.+++++.
T Consensus 669 ll~------~~~~~~i~~~~~-~p~~~~~~~ 692 (702)
T 2p6r_A 669 LIG------RGIAERVVEGIS-VKSLNPESA 692 (702)
T ss_dssp HHC------HHHHHHHHHHHH-HHC------
T ss_pred HhC------hhHHHHHHHhcC-CCccCcchh
Confidence 764 688999999999 999997643
No 6
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=98.52 E-value=8.3e-08 Score=100.46 Aligned_cols=90 Identities=12% Similarity=0.152 Sum_probs=75.5
Q ss_pred ccchhhccCCHHHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCcccCCCCCHHHHHHHhc-ccCCHHHHHcCCHHHHH
Q 019396 4 IPRTAQGHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIAR-KVRTFQELRDMSLQDRA 82 (341)
Q Consensus 4 ~~~~a~~~gwL~~al~~m~L~QmIvQA~W~~~~~~~~~~~d~~spLlQLPh~~~~~v~kl~~-~v~tl~~L~~m~~~er~ 82 (341)
+.+.|...||...+..+..|+|||.||+|. ..+||+|||||+...++++.+ +++|+.+|.+++++++.
T Consensus 614 ~~~i~~~~g~~~~~~~l~~l~~rl~~gv~~-----------e~~~L~qlp~v~~~rar~L~~~G~~s~~dl~~~~~~~l~ 682 (720)
T 2zj8_A 614 LKEIAKVLGAYEIVDYLETLRVRVKYGIRE-----------ELIPLMQLPLVGRRRARALYNSGFRSIEDISQARPEELL 682 (720)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHTCCG-----------GGGGGTTSTTCCHHHHHHHHTTTCCSHHHHHTCCHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHcCCCc-----------cchhhhhCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHH
Confidence 346788899986555555599999999998 789999999999999999988 89999999999999988
Q ss_pred HHHhhccCCChHHHHHHHHHHhcCCc
Q 019396 83 ELLSQVGGFSSTEVQDVEMVLQMMPS 108 (341)
Q Consensus 83 ~lL~~~~~ls~~~~~~v~~v~~~~P~ 108 (341)
.+ . ++.+++++++..++.++|.
T Consensus 683 ~~-~---~~~~~i~~~~~~~~~~~~~ 704 (720)
T 2zj8_A 683 KI-E---GIGVKTVEAIFKFLGKNVK 704 (720)
T ss_dssp TS-T---TCCHHHHHHHHHHHC----
T ss_pred Hh-H---hHHHHHHHHHHHhcccccc
Confidence 76 3 4889999999999999998
No 7
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=98.22 E-value=1e-06 Score=91.85 Aligned_cols=88 Identities=8% Similarity=0.061 Sum_probs=76.5
Q ss_pred ccchhhccCCHHHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCcccCCCCCHHHHHHHhc-ccCCHHHHHcCCHHHHH
Q 019396 4 IPRTAQGHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIAR-KVRTFQELRDMSLQDRA 82 (341)
Q Consensus 4 ~~~~a~~~gwL~~al~~m~L~QmIvQA~W~~~~~~~~~~~d~~spLlQLPh~~~~~v~kl~~-~v~tl~~L~~m~~~er~ 82 (341)
+.+.|..+||...+..+++|+|||.||+|. ...||+|||||....++++.+ +++|+.+|. +++.++.
T Consensus 625 ~~~i~~~~~~~~~~~~l~~l~~rl~~gv~~-----------e~~~L~qlp~i~~~rar~L~~~g~~s~~~l~-~~~~~l~ 692 (715)
T 2va8_A 625 AYHLSRELKLNEHADKLRILNLRVRDGIKE-----------ELLELVQISGVGRKRARLLYNNGIKELGDVV-MNPDKVK 692 (715)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTCCG-----------GGHHHHTSTTCCHHHHHHHHHTTCCSHHHHH-HCHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHcCCCh-----------hhcchhhCCCCCHHHHHHHHHcCCCCHHHHh-CCHHHHH
Confidence 346788999999999999999999999998 789999999999999999987 999999999 9999999
Q ss_pred HHHhhccCCChHHHHHHHH-HHhcCCce
Q 019396 83 ELLSQVGGFSSTEVQDVEM-VLQMMPSL 109 (341)
Q Consensus 83 ~lL~~~~~ls~~~~~~v~~-v~~~~P~I 109 (341)
.+|+ +.+++.+.+ +...+|.+
T Consensus 693 ~~l~------~~~~~~i~~~~~~~~~~~ 714 (715)
T 2va8_A 693 NLLG------QKLGEKVVQEAARLLNRF 714 (715)
T ss_dssp HHHC------HHHHHHHHHHHHHHHC--
T ss_pred HHhC------hhHHHHHHHHHHHhhccC
Confidence 8874 567788887 66667765
No 8
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=94.79 E-value=0.035 Score=41.66 Aligned_cols=57 Identities=19% Similarity=0.332 Sum_probs=49.9
Q ss_pred CCCcccCCCCCHHHHHHHhc-ccCCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHHHhcC
Q 019396 46 TAPFLQLPHFTEAVIKKIAR-KVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMM 106 (341)
Q Consensus 46 ~spLlQLPh~~~~~v~kl~~-~v~tl~~L~~m~~~er~~lL~~~~~ls~~~~~~v~~v~~~~ 106 (341)
..+|++||+++...+.+|.. ++.|+.+|...+.+++..+ .|+++.....++..++.+
T Consensus 6 ~~~l~~L~Gi~~~~~~kL~e~Gi~TvedlA~~~~~eL~~i----~gise~kA~~ii~aAr~~ 63 (70)
T 1wcn_A 6 ADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADI----EGLTDEKAGALIMAARNI 63 (70)
T ss_dssp CHHHHSSTTCCHHHHHHHHTTTCCSHHHHHTSCHHHHHTS----SSCCHHHHHHHHHHHHHH
T ss_pred hhHHHHcCCCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHc----cCCCHHHHHHHHHHHHHc
Confidence 45799999999999999998 9999999999998887665 459999999999988763
No 9
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=90.59 E-value=0.62 Score=36.05 Aligned_cols=51 Identities=22% Similarity=0.316 Sum_probs=41.7
Q ss_pred cCCCCCHHHHHHHhc-ccCCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHHHhc
Q 019396 51 QLPHFTEAVIKKIAR-KVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQM 105 (341)
Q Consensus 51 QLPh~~~~~v~kl~~-~v~tl~~L~~m~~~er~~lL~~~~~ls~~~~~~v~~v~~~ 105 (341)
-.|.+++.+++.+++ +|.|..+|+..++.+..++++ ++-+.+.++.+.+..
T Consensus 8 ~~p~Lse~~~~~L~~~~I~Tv~Dfl~~d~~eL~~~~~----ls~~~v~~l~r~l~~ 59 (83)
T 2kz3_A 8 LCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCG----LSYKALVALRRVLLA 59 (83)
T ss_dssp SSTTCCHHHHHHHHHTTCCCHHHHTTSCHHHHHHHHT----CCHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHCCCCCHHHHHhCCHHHHHHHhC----CCHHHHHHHHHHHHH
Confidence 348999999999998 999999999999999888865 776666666655543
No 10
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=87.51 E-value=0.71 Score=35.71 Aligned_cols=53 Identities=13% Similarity=0.294 Sum_probs=45.2
Q ss_pred CCCcccCCCCCHHHHHHHhcccCCHHHHHcCCHHHHHHHHhhccCCChHH-HHHHHHHHh
Q 019396 46 TAPFLQLPHFTEAVIKKIARKVRTFQELRDMSLQDRAELLSQVGGFSSTE-VQDVEMVLQ 104 (341)
Q Consensus 46 ~spLlQLPh~~~~~v~kl~~~v~tl~~L~~m~~~er~~lL~~~~~ls~~~-~~~v~~v~~ 104 (341)
.+.|..+|+|.+...++|-+...++.+|..++.+++.++++ .+. ++.|+.+++
T Consensus 17 ~s~L~~IpGIG~kr~~~LL~~FgSl~~i~~AS~eEL~~vig------~~~~A~~I~~~l~ 70 (84)
T 1z00_B 17 QDFLLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSILG------NAANAKQLYDFIH 70 (84)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHSSCHHHHHHSCHHHHHHHHS------CHHHHHHHHHHHT
T ss_pred HHHHHhCCCCCHHHHHHHHHHcCCHHHHHHCCHHHHHHHhC------chHHHHHHHHHHH
Confidence 46788999999998888878899999999999999998865 345 788888885
No 11
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=87.34 E-value=0.9 Score=32.96 Aligned_cols=54 Identities=13% Similarity=0.285 Sum_probs=45.6
Q ss_pred CCCcccCCCCCHHHHHHHhcccCCHHHHHcCCHHHHHHHHhhccCCChHH-HHHHHHHHhc
Q 019396 46 TAPFLQLPHFTEAVIKKIARKVRTFQELRDMSLQDRAELLSQVGGFSSTE-VQDVEMVLQM 105 (341)
Q Consensus 46 ~spLlQLPh~~~~~v~kl~~~v~tl~~L~~m~~~er~~lL~~~~~ls~~~-~~~v~~v~~~ 105 (341)
.+.|..+|++.+...++|-+...++.++..++.+++.++++ .+. ++.++++++.
T Consensus 3 ~s~L~~IpGIG~kr~~~LL~~Fgs~~~i~~As~eeL~~vig------~~~~A~~I~~~l~~ 57 (63)
T 2a1j_A 3 QDFLLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSILG------NAANAKQLYDFIHT 57 (63)
T ss_dssp CHHHHTSTTCCHHHHHHHHHHCSSHHHHHTCCHHHHHHHHS------CHHHHHHHHHHHHC
T ss_pred HhHHHcCCCCCHHHHHHHHHHcCCHHHHHHCCHHHHHHHcC------chHHHHHHHHHHhc
Confidence 46789999999998888877889999999999999998865 355 7888888863
No 12
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=85.00 E-value=1.2 Score=41.47 Aligned_cols=55 Identities=13% Similarity=0.226 Sum_probs=44.4
Q ss_pred CCcccCCCCCHHHHHHHhc-ccCCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHHHhc
Q 019396 47 APFLQLPHFTEAVIKKIAR-KVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQM 105 (341)
Q Consensus 47 spLlQLPh~~~~~v~kl~~-~v~tl~~L~~m~~~er~~lL~~~~~ls~~~~~~v~~v~~~ 105 (341)
.+|..||++++..+++|+. ++.|+.+|...+..++..+ .+++.+.+.+++..+..
T Consensus 3 ~~~~~l~gi~~~~~~kL~~~gi~t~~~~~~~~~~~L~~~----~gis~~~a~~~i~~a~~ 58 (322)
T 2i1q_A 3 DNLTDLPGVGPSTAEKLVEAGYIDFMKIATATVGELTDI----EGISEKAAAKMIMGARD 58 (322)
T ss_dssp --CTTSTTCCHHHHHHHHHHTCCSHHHHHTCCHHHHHTS----TTCCHHHHHHHHHHHHH
T ss_pred ccHhhcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHh----hCcCHHHHHHHHHHHHH
Confidence 3789999999999999998 9999999999998776544 45888887777776654
No 13
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=80.75 E-value=0.41 Score=45.08 Aligned_cols=6 Identities=17% Similarity=0.202 Sum_probs=2.3
Q ss_pred EcCCCc
Q 019396 246 LCDSWL 251 (341)
Q Consensus 246 ~SDsYl 251 (341)
++...+
T Consensus 310 l~~N~l 315 (386)
T 2ca6_A 310 LNGNRF 315 (386)
T ss_dssp CTTSBS
T ss_pred ccCCcC
Confidence 333333
No 14
>2lpe_A Kinase suppressor of RAS 1; SAM domain, CC-SAM, coiled-coil, signaling protein, scaffold protein; NMR {Mus musculus}
Probab=80.50 E-value=3.2 Score=35.45 Aligned_cols=59 Identities=25% Similarity=0.377 Sum_probs=47.6
Q ss_pred CCCcccCCCC---------CHHHHHHHhcccCCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHHHhcC
Q 019396 46 TAPFLQLPHF---------TEAVIKKIARKVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMM 106 (341)
Q Consensus 46 ~spLlQLPh~---------~~~~v~kl~~~v~tl~~L~~m~~~er~~lL~~~~~ls~~~~~~v~~v~~~~ 106 (341)
.+.|.++|.+ .++.+..+ .+..||..|++|++.+.+.+|+. .|-.+++...+.++++++
T Consensus 77 ~~~l~~yP~l~~WLrvVgl~~esiq~i-~~~~TLe~LLemsd~evr~~L~~-~ga~eEEcrRL~~Al~nL 144 (149)
T 2lpe_A 77 TAELNSYPRFSDWLYIFNVRPEVVQEI-PQELTLDALLEMDEAKAKEMLRR-WGASTEECSRLQQALTCL 144 (149)
T ss_dssp CTTGGGCSCSTTTHHHHTCCHHHHTTS-CTTCSHHHHTTSCHHHHHHHHHT-TTCCTHHHHHHHHHHTTG
T ss_pred chhhhcCchHHHHHHHhccCHHHHHHh-hhhccHHHHHhcCHHHHHHHHHH-cCCCHHHHHHHHHHHHHH
Confidence 4578888855 56777777 67899999999999999999976 455677888888887765
No 15
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=78.48 E-value=4.3 Score=38.60 Aligned_cols=56 Identities=16% Similarity=0.159 Sum_probs=45.1
Q ss_pred CCCcccCCCCCHHHHHHHhc-ccCCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHHHhc
Q 019396 46 TAPFLQLPHFTEAVIKKIAR-KVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQM 105 (341)
Q Consensus 46 ~spLlQLPh~~~~~v~kl~~-~v~tl~~L~~m~~~er~~lL~~~~~ls~~~~~~v~~v~~~ 105 (341)
..+|..||++++..+++|.+ ++.|+.++...++.++..+. +++...+..+++.+..
T Consensus 34 ~~~l~~l~Gi~~~~~~kL~~ag~~t~~~~~~~~~~~L~~~~----~~s~~~~~~~l~~~~~ 90 (349)
T 1pzn_A 34 IRSIEDLPGVGPATAEKLREAGYDTLEAIAVASPIELKEVA----GISEGTALKIIQAARK 90 (349)
T ss_dssp -CCSSCCTTCCHHHHHHHHTTTCCSHHHHHTCCHHHHHHHH----CCCHHHHHHHHHHHHH
T ss_pred cccHHHcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHhhc----CCCHHHHHHHHHHHhh
Confidence 34799999999999999998 99999999999988877664 4777777666666543
No 16
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=77.14 E-value=0.56 Score=44.12 Aligned_cols=12 Identities=17% Similarity=-0.033 Sum_probs=5.0
Q ss_pred EEEEEEcCCCcc
Q 019396 241 LTCYCLCDSWLG 252 (341)
Q Consensus 241 l~l~v~SDsYlG 252 (341)
++..-++.+.++
T Consensus 276 L~~L~L~~n~i~ 287 (386)
T 2ca6_A 276 LQTLRLQYNEIE 287 (386)
T ss_dssp CCEEECCSSCCB
T ss_pred eEEEECcCCcCC
Confidence 333334444443
No 17
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=74.57 E-value=6.1 Score=29.61 Aligned_cols=55 Identities=16% Similarity=0.280 Sum_probs=44.1
Q ss_pred CCcccCCCCCHHHHHHHhc-ccCCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHHHhcC
Q 019396 47 APFLQLPHFTEAVIKKIAR-KVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMM 106 (341)
Q Consensus 47 spLlQLPh~~~~~v~kl~~-~v~tl~~L~~m~~~er~~lL~~~~~ls~~~~~~v~~v~~~~ 106 (341)
.|+-+| .++.....-+.+ +|.|+.+|+.++.+++.++ -+|..+-+++|...+..+
T Consensus 9 ~~Ie~L-~LS~Ra~NcLkragI~Tv~dL~~~s~~dLlki----~n~G~kSl~EI~~~L~~~ 64 (73)
T 1z3e_B 9 MTIEEL-DLSVRSYNCLKRAGINTVQELANKTEEDMMKV----RNLGRKSLEEVKAKLEEL 64 (73)
T ss_dssp CBGGGS-CCBHHHHHHHHHTTCCBHHHHHTSCHHHHHTS----TTCCHHHHHHHHHHHHHT
T ss_pred CcHHHh-CCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHc----CCCCHHHHHHHHHHHHHh
Confidence 567777 578887777777 9999999999998876544 458888899999888865
No 18
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=70.44 E-value=7.5 Score=30.18 Aligned_cols=56 Identities=11% Similarity=0.093 Sum_probs=44.5
Q ss_pred CCcccCCCCCHHHHHHHhc-ccCCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHHHhcCC
Q 019396 47 APFLQLPHFTEAVIKKIAR-KVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMP 107 (341)
Q Consensus 47 spLlQLPh~~~~~v~kl~~-~v~tl~~L~~m~~~er~~lL~~~~~ls~~~~~~v~~v~~~~P 107 (341)
.|+-+| .++.....-+++ +|.|+.+|+.++.+++.++ .+|..+-+++|...+..+-
T Consensus 12 ~~I~~L-~LSvRa~NcLkragI~Tv~dL~~~se~dLlki----~n~G~KSl~EI~~~L~~~G 68 (86)
T 3k4g_A 12 RPVDDL-ELTVRSANCLXAEAIHYIGDLVQRTEVELLXT----PNLGXXSLTEIXDVLASRG 68 (86)
T ss_dssp SBGGGG-CCCHHHHHHHHHTTCCBHHHHHHSCHHHHHTS----TTCCHHHHHHHHHHHHTTT
T ss_pred CcHHHh-CCCHHHHHHHHHcCCCcHHHHHhCCHHHHhhc----cccCcccHHHHHHHHHHcC
Confidence 455566 678877777777 9999999999998876544 3588899999999998773
No 19
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=67.77 E-value=4.3 Score=30.04 Aligned_cols=55 Identities=18% Similarity=0.221 Sum_probs=42.1
Q ss_pred CCCcccCCCCCHHHHHHHhcccCCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHHHh
Q 019396 46 TAPFLQLPHFTEAVIKKIARKVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQ 104 (341)
Q Consensus 46 ~spLlQLPh~~~~~v~kl~~~v~tl~~L~~m~~~er~~lL~~~~~ls~~~~~~v~~v~~ 104 (341)
.+.|..+|++.+..+++|-+...++..+++.+.+++.. +.|+.+..+..+..+++
T Consensus 23 ~~~L~~I~gIG~~~A~~Ll~~fgsl~~l~~a~~eeL~~----i~GIG~~~a~~I~~~~~ 77 (78)
T 1kft_A 23 TSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAK----VPGISQGLAEKIFWSLK 77 (78)
T ss_dssp CCGGGGCTTCSSSHHHHHHHHHSCHHHHHHCCHHHHTT----SSSTTSHHHHHHHHHHT
T ss_pred HHHHhcCCCCCHHHHHHHHHHcCCHHHHHHCCHHHHHH----CCCCCHHHHHHHHHHHh
Confidence 56789999999888888776666889999888776543 35677888888877654
No 20
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=67.55 E-value=1.1 Score=41.95 Aligned_cols=57 Identities=19% Similarity=0.226 Sum_probs=0.0
Q ss_pred CCCCcccCCCCCHHHHHHHhc-ccCCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHHHhc
Q 019396 45 GTAPFLQLPHFTEAVIKKIAR-KVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQM 105 (341)
Q Consensus 45 ~~spLlQLPh~~~~~v~kl~~-~v~tl~~L~~m~~~er~~lL~~~~~ls~~~~~~v~~v~~~ 105 (341)
...+|.+||++++..+++|++ ++.|+.+++..++.++... .|++...+..+++.+..
T Consensus 10 ~~~~~~~l~g~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~----~g~s~~~~~~~~~~~~~ 67 (324)
T 2z43_A 10 NIKTINDLPGISQTVINKLIEAGYSSLETLAVASPQDLSVA----AGIPLSTAQKIIKEARD 67 (324)
T ss_dssp --------------------------------------------------------------
T ss_pred CCccHHHcCCCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHh----hCCCHHHHHHHHHHHHh
Confidence 345899999999999999988 9999999998877665444 34666666666655543
No 21
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=67.46 E-value=2.9 Score=31.16 Aligned_cols=55 Identities=15% Similarity=0.249 Sum_probs=44.8
Q ss_pred CcccCCCCCHHHHHHHhc-ccCCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHHHhcC
Q 019396 48 PFLQLPHFTEAVIKKIAR-KVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMM 106 (341)
Q Consensus 48 pLlQLPh~~~~~v~kl~~-~v~tl~~L~~m~~~er~~lL~~~~~ls~~~~~~v~~v~~~~ 106 (341)
.|++.+++++..+++|.. +..|+..+...+.+++..+ .|+++..+.++...++.+
T Consensus 7 ~f~~~lgI~e~~a~~L~~~Gf~tve~vA~~~~~eL~~I----~G~dE~~a~~l~~~A~~~ 62 (70)
T 1u9l_A 7 TFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEI----EGLDEPTVEALRERAKNA 62 (70)
T ss_dssp HHHHHHTCCHHHHHHHHHTTCCCHHHHHHSCHHHHTTS----TTCCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHcCcCcHHHHHcCCHHHHhhc----cCCCHHHHHHHHHHHHHH
Confidence 466777899999999988 9999999999988775433 579999998888877653
No 22
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=63.91 E-value=6.5 Score=30.04 Aligned_cols=55 Identities=16% Similarity=0.280 Sum_probs=42.0
Q ss_pred CCcccCCCCCHHHHHHHhc-ccCCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHHHhcC
Q 019396 47 APFLQLPHFTEAVIKKIAR-KVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMM 106 (341)
Q Consensus 47 spLlQLPh~~~~~v~kl~~-~v~tl~~L~~m~~~er~~lL~~~~~ls~~~~~~v~~v~~~~ 106 (341)
.|+-+| .++.....-|++ +|.|+.+|+.++.+++.++ -+|..+-+++|...+..+
T Consensus 16 ~~Ie~L-~LS~Ra~NcLk~agI~Tv~dL~~~se~dLlki----~n~G~kSl~EI~~~L~e~ 71 (79)
T 3gfk_B 16 MTIEEL-DLSVRSYNCLKRAGINTVQELANKTEEDMMKV----RNLGRKSLEEVKAKLEEL 71 (79)
T ss_dssp CBGGGS-CCBHHHHHHHHHTTCCBHHHHTTCCHHHHTTS----TTCHHHHHHHHHHHHHHT
T ss_pred CcHHHh-CCCHHHHHHHHHhCCCCHHHHHhCCHHHHHHc----CCCCHhHHHHHHHHHHHc
Confidence 355556 577777777777 9999999999998876544 347778888888888764
No 23
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=63.77 E-value=11 Score=28.70 Aligned_cols=54 Identities=13% Similarity=0.138 Sum_probs=41.8
Q ss_pred CCcccCCCCCHHHHHHHhcccCCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHHHh
Q 019396 47 APFLQLPHFTEAVIKKIARKVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQ 104 (341)
Q Consensus 47 spLlQLPh~~~~~v~kl~~~v~tl~~L~~m~~~er~~lL~~~~~ls~~~~~~v~~v~~ 104 (341)
..|..+|++.+..+++|-+...++..|+..+.+++..+ .|+.+..+..+..++.
T Consensus 32 ~~L~~IpgIG~~~A~~Ll~~fgs~~~l~~as~~eL~~i----~GIG~~~a~~I~~~l~ 85 (91)
T 2a1j_B 32 ECLTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLALC----PGLGPQKARRLFDVLH 85 (91)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHSSHHHHHSCCHHHHHTS----SSCCSHHHHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHHHHCCCHHHHHhCCHHHHHhC----CCCCHHHHHHHHHHHh
Confidence 34678999999988888776678999999887765433 5688888888887774
No 24
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=63.04 E-value=11 Score=28.48 Aligned_cols=55 Identities=13% Similarity=0.124 Sum_probs=43.5
Q ss_pred CCcccCCCCCHHHHHHHhcccCCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHHHhc
Q 019396 47 APFLQLPHFTEAVIKKIARKVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQM 105 (341)
Q Consensus 47 spLlQLPh~~~~~v~kl~~~v~tl~~L~~m~~~er~~lL~~~~~ls~~~~~~v~~v~~~ 105 (341)
..|..+|++.+..+++|-+...++..++..+.+++..+ .|+.+..+..+..+++.
T Consensus 19 ~~L~~IpgIG~~~A~~Ll~~fgsl~~l~~a~~~eL~~i----~GIG~~~a~~I~~~l~~ 73 (89)
T 1z00_A 19 ECLTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLALC----PGLGPQKARRLFDVLHE 73 (89)
T ss_dssp HHHTTSSSCCHHHHHHHHHHTCBHHHHHHCCHHHHHTS----TTCCHHHHHHHHHHHHS
T ss_pred HHHHcCCCCCHHHHHHHHHHCCCHHHHHhCCHHHHHhC----CCCCHHHHHHHHHHHHH
Confidence 35778999999988888776778999999888765443 56888888888888764
No 25
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=61.33 E-value=2.3 Score=34.65 Aligned_cols=57 Identities=12% Similarity=0.200 Sum_probs=47.9
Q ss_pred CCcccCC--CCCHHHHHHHhc-ccCCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHHHhcCC
Q 019396 47 APFLQLP--HFTEAVIKKIAR-KVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMP 107 (341)
Q Consensus 47 spLlQLP--h~~~~~v~kl~~-~v~tl~~L~~m~~~er~~lL~~~~~ls~~~~~~v~~v~~~~P 107 (341)
.|+..|| ++++..+++|.. ++.|+..+...++.++..+ .|+++..+..++..++++-
T Consensus 23 ~~I~~L~~~GIg~~~i~kL~eAG~~Tve~va~a~~~eL~~i----~GIse~ka~kIi~aA~kl~ 82 (114)
T 1b22_A 23 QPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINI----KGISEAKADKILAEAAKLV 82 (114)
T ss_dssp CCHHHHHHTTCSHHHHHHHHTTCCSSGGGBTSSBHHHHHTT----TTCSTTHHHHHHHHHHHHS
T ss_pred ccHHHHHhcCCCHHHHHHHHHcCcCcHHHHHhCCHHHHHHc----cCCCHHHHHHHHHHHHHHc
Confidence 4677788 899999999998 9999999988887775544 5699999999999998864
No 26
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=60.03 E-value=11 Score=26.99 Aligned_cols=54 Identities=13% Similarity=0.311 Sum_probs=41.4
Q ss_pred CcccCCCCCHHHHHHHhcccCCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHHHhc
Q 019396 48 PFLQLPHFTEAVIKKIARKVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQM 105 (341)
Q Consensus 48 pLlQLPh~~~~~v~kl~~~v~tl~~L~~m~~~er~~lL~~~~~ls~~~~~~v~~v~~~ 105 (341)
.|.++|++.+..+++|-....++..|+..+.+++.. +.|+.+..+..+..++..
T Consensus 15 ~L~~i~giG~~~a~~Ll~~fgs~~~l~~a~~~~L~~----i~Gig~~~a~~i~~~~~~ 68 (75)
T 1x2i_A 15 IVEGLPHVSATLARRLLKHFGSVERVFTASVAELMK----VEGIGEKIAKEIRRVITA 68 (75)
T ss_dssp HHTTSTTCCHHHHHHHHHHHCSHHHHHHCCHHHHTT----STTCCHHHHHHHHHHHHS
T ss_pred HHcCCCCCCHHHHHHHHHHcCCHHHHHhCCHHHHhc----CCCCCHHHHHHHHHHHhC
Confidence 578899999988888877667888998887666433 356888888888877753
No 27
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=52.76 E-value=13 Score=29.09 Aligned_cols=36 Identities=19% Similarity=0.390 Sum_probs=31.8
Q ss_pred CCCcccCCCCCHHHHHHHhc-ccCCHHHHHcCCHHHH
Q 019396 46 TAPFLQLPHFTEAVIKKIAR-KVRTFQELRDMSLQDR 81 (341)
Q Consensus 46 ~spLlQLPh~~~~~v~kl~~-~v~tl~~L~~m~~~er 81 (341)
.+.|..||++.+.+.+.|.+ +|.|+.+|..+...+.
T Consensus 3 m~~L~dLPNig~~~e~~L~~~GI~t~~~Lr~~Ga~~a 39 (93)
T 3mab_A 3 LANLSELPNIGKVLEQDLIKAGIKTPVELKDVGSKEA 39 (93)
T ss_dssp CCCGGGSTTCCHHHHHHHHHTTCCSHHHHHHHCHHHH
T ss_pred HHHHhhCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHH
Confidence 46799999999999999988 9999999999887653
No 28
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=52.75 E-value=42 Score=26.17 Aligned_cols=62 Identities=18% Similarity=0.160 Sum_probs=47.6
Q ss_pred CCCCcccCCCCCHHHHHHHhc-ccCC----HHHHHcC--CHHHHHHHHhhccCCChHHHHHHHHHHhcC
Q 019396 45 GTAPFLQLPHFTEAVIKKIAR-KVRT----FQELRDM--SLQDRAELLSQVGGFSSTEVQDVEMVLQMM 106 (341)
Q Consensus 45 ~~spLlQLPh~~~~~v~kl~~-~v~t----l~~L~~m--~~~er~~lL~~~~~ls~~~~~~v~~v~~~~ 106 (341)
++-++..||++.+...++|+. ++.. |++|+-| +.+.-...|....|.+.+|..+..+.++.|
T Consensus 16 geK~V~evpGIG~~~~~~L~~~Gf~kAy~lLGqFL~l~kd~~~F~~WLk~~~gan~kq~~dc~~cl~eW 84 (89)
T 1ci4_A 16 GEKPVGSLAGIGEVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFREWLKDTCGANAKQSRDCFGCLREW 84 (89)
T ss_dssp TTCCGGGSTTCCHHHHHHHHHTTCCSHHHHHHHHHHTTTCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CCCCcccCCCcCHHHHHHHHHcCccHHHHHHHHHHHcCCCHHHHHHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 467899999999999999987 5544 6677656 555556677765688999999988887643
No 29
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=51.10 E-value=35 Score=32.12 Aligned_cols=56 Identities=13% Similarity=-0.031 Sum_probs=44.4
Q ss_pred CCcccCCCCCHHHHHHHhc-ccCCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHHHhcCCc
Q 019396 47 APFLQLPHFTEAVIKKIAR-KVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMPS 108 (341)
Q Consensus 47 spLlQLPh~~~~~v~kl~~-~v~tl~~L~~m~~~er~~lL~~~~~ls~~~~~~v~~v~~~~P~ 108 (341)
-|+.-||++...+.++|.+ ++.|+.+|..++...+.+.++ ......+...+.-+..
T Consensus 178 lpv~~l~GiG~~~~~~L~~~GI~Ti~dL~~~~~~~L~~~fG------~~~g~~l~~~a~G~d~ 234 (356)
T 4dez_A 178 RPPDALWGVGPKTTKKLAAMGITTVADLAVTDPSVLTTAFG------PSTGLWLLLLAKGGGD 234 (356)
T ss_dssp SCGGGSTTCCHHHHHHHHHTTCCSHHHHHTSCHHHHHHHHC------HHHHHHHHHHHTTCCC
T ss_pred CcHHHHcCCchhHHHHHHHcCCCeecccccCCHHHHHHHhC------ChHHHHHHHHHcCCCc
Confidence 5888899999999999988 999999999999988777665 2345566666665543
No 30
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=50.71 E-value=16 Score=32.10 Aligned_cols=54 Identities=9% Similarity=0.266 Sum_probs=43.3
Q ss_pred CcccCCCCCHHHHHHHhcccCCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHHHhc
Q 019396 48 PFLQLPHFTEAVIKKIARKVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQM 105 (341)
Q Consensus 48 pLlQLPh~~~~~v~kl~~~v~tl~~L~~m~~~er~~lL~~~~~ls~~~~~~v~~v~~~ 105 (341)
.|.++|++.+..+++|.+...++..|++.+.+++..+ .|+.++.++.+..+++.
T Consensus 163 ~L~~i~gVg~~~a~~Ll~~fgs~~~l~~a~~e~L~~v----~GiG~~~a~~i~~~~~~ 216 (219)
T 2bgw_A 163 ILQSFPGIGRRTAERILERFGSLERFFTASKAEISKV----EGIGEKRAEEIKKILMT 216 (219)
T ss_dssp HHHTSTTCCHHHHHHHHHHHSSHHHHTTCCHHHHHHS----TTCCHHHHHHHHHHHHS
T ss_pred HHhcCCCCCHHHHHHHHHHcCCHHHHHhCCHHHHhhC----CCCCHHHHHHHHHHHhc
Confidence 4668999999999988877788999999888775443 46888888888887753
No 31
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=50.56 E-value=17 Score=34.28 Aligned_cols=58 Identities=5% Similarity=0.133 Sum_probs=47.3
Q ss_pred CCcccCCCCCHHHHHHHhc-ccCCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHHHhcCCcee
Q 019396 47 APFLQLPHFTEAVIKKIAR-KVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMPSLT 110 (341)
Q Consensus 47 spLlQLPh~~~~~v~kl~~-~v~tl~~L~~m~~~er~~lL~~~~~ls~~~~~~v~~v~~~~P~I~ 110 (341)
-|+..||++...+.++|.+ ++.|+++|..++...+...++. .....++..+.-+..-.
T Consensus 179 lpv~~l~GiG~~~~~~L~~~Gi~t~~dL~~~~~~~L~~~fG~------~~g~~l~~~a~G~d~~~ 237 (354)
T 3bq0_A 179 LDIDEIPGIGSVLARRLNELGIQKLRDILSKNYNELEKITGK------AKALYLLKLAQNKYSEP 237 (354)
T ss_dssp CBSTTSTTCCHHHHHHHTTTTCCBGGGGGGSCHHHHHHHHCH------HHHHHHHHHHTTCCCCC
T ss_pred CCcccccCcCHHHHHHHHHcCCccHHHHhcCCHHHHHHHHCH------HHHHHHHHHhCCCCCCC
Confidence 4788899999999999988 9999999999998888777652 23677888887776544
No 32
>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli} SCOP: a.60.3.1 PDB: 2jzb_A
Probab=50.20 E-value=12 Score=29.62 Aligned_cols=54 Identities=11% Similarity=0.139 Sum_probs=39.8
Q ss_pred CcccCCCCCHHHHHHHhc-ccCCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHHHhcC
Q 019396 48 PFLQLPHFTEAVIKKIAR-KVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMM 106 (341)
Q Consensus 48 pLlQLPh~~~~~v~kl~~-~v~tl~~L~~m~~~er~~lL~~~~~ls~~~~~~v~~v~~~~ 106 (341)
|+-+| .++.....-|++ +|.|+.+|+.++.+++.++ -+|..+-+.+|...+..+
T Consensus 25 ~Ie~L-~LSvRs~NcLkragI~Tv~dL~~~se~dLlki----~n~G~KSl~EI~~~L~~~ 79 (98)
T 1coo_A 25 PVDDL-ELTVRSANCLKAEAIHYIGDLVQRTEVELLKT----PNLGKKSLTEIKDVLASR 79 (98)
T ss_dssp BGGGG-TCCTTTHHHHHTTTCCBHHHHHTSCHHHHTTS----TTCCHHHHHHHHHHHHHT
T ss_pred cHHHh-CCCHHHHHHHHHcCCCcHHHHHhCCHHHHHhc----CCCCHHHHHHHHHHHHHc
Confidence 34444 355555555666 8999999999998875443 348888899999998876
No 33
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=50.17 E-value=19 Score=34.02 Aligned_cols=58 Identities=3% Similarity=0.111 Sum_probs=46.7
Q ss_pred CCcccCCCCCHHHHHHHhc-ccCCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHHHhcCCcee
Q 019396 47 APFLQLPHFTEAVIKKIAR-KVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMPSLT 110 (341)
Q Consensus 47 spLlQLPh~~~~~v~kl~~-~v~tl~~L~~m~~~er~~lL~~~~~ls~~~~~~v~~v~~~~P~I~ 110 (341)
-|+..||++...+.++|.+ ++.|+++|..++...+...++. .....++..+.-+..-.
T Consensus 178 lpv~~l~GiG~~~~~~L~~~Gi~t~~dL~~~~~~~L~~~fG~------~~g~~l~~~a~G~d~~~ 236 (352)
T 1jx4_A 178 LDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGE------AKAKYLISLARDEYNEP 236 (352)
T ss_dssp SBGGGSTTCCHHHHHHHHTTTCCBGGGGGSSCHHHHHHHHCH------HHHHHHHHHHTTCCCCC
T ss_pred CCCCcccccCHHHHHHHHHcCCchHHHHHCCCHHHHHHhcCh------hHHHHHHHHhCCCCCCC
Confidence 5899999999999999998 9999999999998888777652 22667777777665543
No 34
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=48.16 E-value=17 Score=35.44 Aligned_cols=55 Identities=20% Similarity=0.212 Sum_probs=44.8
Q ss_pred CCcccCCC--CCHHHHHHHhc-ccCCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHHHhc
Q 019396 47 APFLQLPH--FTEAVIKKIAR-KVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQM 105 (341)
Q Consensus 47 spLlQLPh--~~~~~v~kl~~-~v~tl~~L~~m~~~er~~lL~~~~~ls~~~~~~v~~v~~~ 105 (341)
.++..|+. +++..+++|.+ ++.|+.+|...+..++.++ .|++...+..+++.+.+
T Consensus 81 ~~~~~l~~~gi~~~~~~~L~~ag~~tv~~~~~~~~~~L~~~----~gis~~~~~~i~~~a~~ 138 (400)
T 3lda_A 81 VPIEKLQVNGITMADVKKLRESGLHTAEAVAYAPRKDLLEI----KGISEAKADKLLNEAAR 138 (400)
T ss_dssp CBGGGGCCTTCCHHHHHHHHHTTCCBHHHHHHSCHHHHHTS----TTCCHHHHHHHHHHHHH
T ss_pred cCHHHHHhCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHH----hCCCHHHHHHHHHHHHH
Confidence 35667776 89999999988 9999999999998877655 45888888888777765
No 35
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=42.13 E-value=27 Score=35.20 Aligned_cols=54 Identities=15% Similarity=0.166 Sum_probs=42.8
Q ss_pred CCcccCCCCCHHHHHHHhc-ccCCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHHHhcC
Q 019396 47 APFLQLPHFTEAVIKKIAR-KVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMM 106 (341)
Q Consensus 47 spLlQLPh~~~~~v~kl~~-~v~tl~~L~~m~~~er~~lL~~~~~ls~~~~~~v~~v~~~~ 106 (341)
-|+..||++...+.++|.+ +|.|+.+|..++...+...++ ......+...|.-+
T Consensus 315 LPV~~l~GIG~~t~~kL~~lGI~TigDLa~~~~~~L~~~fG------~~~g~~L~~~a~Gi 369 (504)
T 3gqc_A 315 QLVTNLPGVGHSMESKLASLGIKTCGDLQYMTMAKLQKEFG------PKTGQMLYRFCRGL 369 (504)
T ss_dssp SBGGGSTTCCHHHHHHHHHTTCCBHHHHTTSCHHHHHHHHC------HHHHHHHHHHTTTC
T ss_pred CChhHhhCcCHHHHHHHHHcCCCcHHHHHhccHHHHHHhhC------hhHHHHHHHHhcCC
Confidence 5899999999999999998 999999999999888777665 23355555555444
No 36
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=41.46 E-value=19 Score=28.03 Aligned_cols=36 Identities=19% Similarity=0.390 Sum_probs=31.1
Q ss_pred CCCcccCCCCCHHHHHHHhc-ccCCHHHHHcCCHHHH
Q 019396 46 TAPFLQLPHFTEAVIKKIAR-KVRTFQELRDMSLQDR 81 (341)
Q Consensus 46 ~spLlQLPh~~~~~v~kl~~-~v~tl~~L~~m~~~er 81 (341)
...|..||++.+.+.+.+.+ +|.|+.+|..+.+.+.
T Consensus 3 ~~~L~~LPNiG~~~e~~L~~vGI~s~e~L~~~Ga~~a 39 (93)
T 3bqs_A 3 LANLSELPNIGKVLEQDLIKAGIKTPVELKDVGSKEA 39 (93)
T ss_dssp CSCGGGSTTCCHHHHHHHHHTTCCSHHHHHHHHHHHH
T ss_pred hHHhhcCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHH
Confidence 35799999999999999988 9999999998876654
No 37
>1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix, fidelity, processivity, transferase; 2.30A {Sulfolobus solfataricus} SCOP: e.8.1.7
Probab=39.70 E-value=10 Score=33.80 Aligned_cols=35 Identities=3% Similarity=0.258 Sum_probs=24.1
Q ss_pred CCcccCCCCCHHHHHHHhc-ccCCHHHHHcCCHHHH
Q 019396 47 APFLQLPHFTEAVIKKIAR-KVRTFQELRDMSLQDR 81 (341)
Q Consensus 47 spLlQLPh~~~~~v~kl~~-~v~tl~~L~~m~~~er 81 (341)
-|+..||++...+.++|.+ +++|+.+|..++...+
T Consensus 184 lpv~~l~giG~~~~~~L~~~Gi~TigdL~~~~~~~L 219 (221)
T 1im4_A 184 LDIDEIPGIGSVLARRLNELGIQKLRDILSKNYNEL 219 (221)
T ss_dssp CBGGGSTTCCHHHHHHHHHTTCCBTTC---------
T ss_pred CCcccccCCCHHHHHHHHHcCCCcHHHHHCCCHHHh
Confidence 5899999999999999988 9999999999886543
No 38
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=38.91 E-value=21 Score=34.06 Aligned_cols=57 Identities=4% Similarity=0.110 Sum_probs=44.7
Q ss_pred CCcccCCCCCHHHHHHHhc-ccCCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHHHhcCCce
Q 019396 47 APFLQLPHFTEAVIKKIAR-KVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMPSL 109 (341)
Q Consensus 47 spLlQLPh~~~~~v~kl~~-~v~tl~~L~~m~~~er~~lL~~~~~ls~~~~~~v~~v~~~~P~I 109 (341)
-|+..||++...+.++|.+ ++.|+.+|..++...+...++ ......+...+.-+..-
T Consensus 179 lpv~~l~GiG~~~~~~L~~~GI~Ti~dL~~~~~~~L~~~fG------~~~g~~l~~~a~G~d~~ 236 (362)
T 4f4y_A 179 LDIDEIPGIGSVLARRLNELGIQKLRDILSKNYNELEKITG------KAKALYLLKLAQDEYNE 236 (362)
T ss_dssp CBSTTSTTCCSTTHHHHHHTTCCBGGGGTTSCHHHHHHHHC------HHHHHHHHHHHTTCCCC
T ss_pred CChhhccCCCHHHHHHHHHcCCChHHHHhcCCHHHHHHHhC------hHHHHHHHHHhcCCCCC
Confidence 5888899999888899988 999999999999888776655 24566677666665543
No 39
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=38.19 E-value=62 Score=31.51 Aligned_cols=54 Identities=11% Similarity=0.095 Sum_probs=42.8
Q ss_pred CcccCCCCCHHHHHHHhc-ccCCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHHHhcCC
Q 019396 48 PFLQLPHFTEAVIKKIAR-KVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMP 107 (341)
Q Consensus 48 pLlQLPh~~~~~v~kl~~-~v~tl~~L~~m~~~er~~lL~~~~~ls~~~~~~v~~v~~~~P 107 (341)
|+..||++...+.++|.+ ++.|+.+|..++...+...++. .....+...+.-+.
T Consensus 235 pv~~l~GIG~~t~~~L~~lGI~TigdLa~~~~~~L~~~fG~------~~g~~L~~~a~G~d 289 (420)
T 3osn_A 235 HIKEIPGIGYKTAKCLEALGINSVRDLQTFSPKILEKELGI------SVAQRIQKLSFGED 289 (420)
T ss_dssp SGGGSTTCCHHHHHHHHHTTCCSHHHHHHSCHHHHHHHHHH------HHHHHHHHHHTTCC
T ss_pred cHHHccCCCHHHHHHHHHhCCCcHHHHhhCCHHHHHHHhCc------hHHHHHHHHhcCCC
Confidence 478889999999999988 9999999999999888777762 34556666665443
No 40
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=35.24 E-value=8 Score=36.45 Aligned_cols=53 Identities=17% Similarity=0.212 Sum_probs=0.0
Q ss_pred CcccCC--CCCHHHHHHHhc-ccCCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHHHh
Q 019396 48 PFLQLP--HFTEAVIKKIAR-KVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQ 104 (341)
Q Consensus 48 pLlQLP--h~~~~~v~kl~~-~v~tl~~L~~m~~~er~~lL~~~~~ls~~~~~~v~~v~~ 104 (341)
+|..|| ++++..+++|.+ ++.|+.+++..++.++..+ .+++...+..+++.+.
T Consensus 26 ~~~~l~~~g~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~----~~is~~~~~~~~~~a~ 81 (343)
T 1v5w_A 26 DIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRALCNV----KGLSEAKVDKIKEAAN 81 (343)
T ss_dssp ------------------------------------------------------------
T ss_pred cHHHHhhCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHh----hCCCHHHHHHHHHHHH
Confidence 677888 899999999988 8999999988877665544 3466666666655554
No 41
>2dkz_A Hypothetical protein LOC64762; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.71 E-value=91 Score=23.99 Aligned_cols=51 Identities=14% Similarity=0.070 Sum_probs=34.8
Q ss_pred CCCCCHHHHHHHhcccCCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHHHhcC
Q 019396 52 LPHFTEAVIKKIARKVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMM 106 (341)
Q Consensus 52 LPh~~~~~v~kl~~~v~tl~~L~~m~~~er~~lL~~~~~ls~~~~~~v~~v~~~~ 106 (341)
+=++.+.++.++++.--.=.-|+.|+.+.+.+=| +++.-|.+.|+++++-|
T Consensus 29 ~igL~e~vv~~F~~e~IDG~lL~~L~ee~L~edf----~ls~Lq~kKi~~fI~GW 79 (84)
T 2dkz_A 29 FIGLSEDVISFFVTEKIDGNLLVQLTEEILSEDF----KLSKLQVKKIMQFINGS 79 (84)
T ss_dssp GTCCCHHHHHHHHTTTCCHHHHHHCCHHHHHHTS----CCCHHHHHHHHHHHHCC
T ss_pred HcCCcHHHHHHHHHHccchHHHHhCCHHHHHhhc----CCCHHHHHHHHHHHhcC
Confidence 3355566666666633345567788877665443 48889999999998765
No 42
>2yrl_A KIAA1837 protein; PKD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.26 E-value=94 Score=23.92 Aligned_cols=37 Identities=11% Similarity=0.205 Sum_probs=29.2
Q ss_pred EEEEcCCCCceeEEEEEEcCCCcccceEEEEEEEeeccC
Q 019396 229 GKIQAPAEGNYNLTCYCLCDSWLGCDKRTNLKVKILKRT 267 (341)
Q Consensus 229 l~F~aP~~G~~~l~l~v~SDsYlG~D~~~~i~l~V~~~~ 267 (341)
+.|..|.+|.|.|+|.|-=+. |.-..-.+.+.|....
T Consensus 61 ~~~t~~~~G~y~f~LTVtD~~--G~s~s~~v~VtV~~~~ 97 (102)
T 2yrl_A 61 ATVTGLQVGTYVFTLTVKDER--NLQSQSSVNVIVKEES 97 (102)
T ss_dssp EEEESCCSSEEEEEEEEEBTT--CCEEEEEEEEEEECCS
T ss_pred EEEECCCCeEEEEEEEEEeCC--CCEEEeEEEEEEcCCC
Confidence 688999999999999975553 7766777888887654
No 43
>2wnv_B C1Q chain B, complement C1Q subcomponent subunit B; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_B 2wnu_B* 2jg9_B* 1pk6_B
Probab=32.81 E-value=51 Score=26.82 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=19.0
Q ss_pred EEEEcCCCCceeEEEEEEcCC
Q 019396 229 GKIQAPAEGNYNLTCYCLCDS 249 (341)
Q Consensus 229 l~F~aP~~G~~~l~l~v~SDs 249 (341)
..|++|-+|.|.|...+++..
T Consensus 41 G~Ftap~~G~Y~Fs~~~~~~~ 61 (136)
T 2wnv_B 41 GKFTCKVPGLYYFTYHASSRG 61 (136)
T ss_dssp TEEECSSCEEEEEEEEEEESS
T ss_pred CEEECCcCeEEEEEEEEEECC
Confidence 589999999999999999874
No 44
>2wnv_A C1Q chain A, complement C1Q subcomponent subunit A; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_A 2wnu_A* 2jg9_A* 1pk6_A
Probab=29.74 E-value=39 Score=27.37 Aligned_cols=20 Identities=25% Similarity=0.461 Sum_probs=18.4
Q ss_pred EEEEcCCCCceeEEEEEEcC
Q 019396 229 GKIQAPAEGNYNLTCYCLCD 248 (341)
Q Consensus 229 l~F~aP~~G~~~l~l~v~SD 248 (341)
..|++|-||.|.|...+++.
T Consensus 38 G~Ftap~~G~Y~Fs~~~~~~ 57 (134)
T 2wnv_A 38 GRFVCTVPGYYYFTFQVLSQ 57 (134)
T ss_dssp TEEECCSCEEEEEEEEEEES
T ss_pred CEEECeeCCEEEEEEEEEEC
Confidence 58999999999999999885
No 45
>2hr0_A Complement C3 beta chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2i07_A* 2wii_A* 2win_A* 2xwj_A* 3l3o_A* 3l5n_A* 3nms_A* 3nsa_A* 3ohx_A* 3t4a_A 2a74_A* 2a73_A* 2qki_A* 3g6j_A 2ice_A* 2icf_A* 2xwb_A*
Probab=28.57 E-value=3.2e+02 Score=27.52 Aligned_cols=44 Identities=11% Similarity=0.046 Sum_probs=26.7
Q ss_pred ccCCCeEEEEEeeeeeccCCCCCCCccCCCCCCCCcccEEEEEEECCCCeEEEEeeeee
Q 019396 123 IQEGDIVTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWFLLADSVSNNVWFSQKVSF 181 (341)
Q Consensus 123 It~g~~vtl~~~V~L~R~n~~~~~~~~aP~FP~~K~E~WwvvlgD~~~n~Il~~krvs~ 181 (341)
..||+.|+++ +.+...+ +.| .. ..-.|.|.|++.++|.. +.+..
T Consensus 117 YrPGqtV~~r--~i~~d~~-------~~p---~~--~~v~v~l~dP~g~~i~~-~~~~~ 160 (645)
T 2hr0_A 117 YTPGSTVLYR--IFTVNHK-------LLP---VG--RTVMVNIENPEGIPVKQ-DSLSS 160 (645)
T ss_dssp CCTTSEEEEE--EEEECTT-------SCB---CC--CEEEEEEECTTSCEEEE-EEEEC
T ss_pred CCCCCEEEEE--EEEECCC-------Ccc---cC--ceEEEEEECCCCCEEEE-EEeec
Confidence 5889888877 6544211 122 11 23578888998888765 45543
No 46
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=27.75 E-value=34 Score=33.35 Aligned_cols=55 Identities=9% Similarity=0.247 Sum_probs=45.2
Q ss_pred CcccCCCCCHHHHHHHhcccCCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHHHhcC
Q 019396 48 PFLQLPHFTEAVIKKIARKVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMM 106 (341)
Q Consensus 48 pLlQLPh~~~~~v~kl~~~v~tl~~L~~m~~~er~~lL~~~~~ls~~~~~~v~~v~~~~ 106 (341)
-|..+|.+.+.++++|-....+++.+++.+.+++.++ .|+.+..++.|.+.+.++
T Consensus 316 iLs~IPrl~~~iae~Lv~~FGsLq~Il~AS~eEL~~V----eGIGe~rAr~IregL~r~ 370 (377)
T 3c1y_A 316 LLKTVARIPLSIGYNVVRMFKTLDQISKASVEDLKKV----EGIGEKRARAISESISSL 370 (377)
T ss_dssp HHHHTSCCCHHHHHHHHHHHCSHHHHTTCCHHHHTTS----TTCCHHHHHHHHHHHHHH
T ss_pred HHhhCCCCCHHHHHHHHHHhCCHHHHHhCCHHHHHhc----cCccHHHHHHHHHHHHHH
Confidence 3455999999999998888889999999999987654 568888888888877654
No 47
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A
Probab=26.99 E-value=14 Score=34.05 Aligned_cols=7 Identities=0% Similarity=-0.121 Sum_probs=4.6
Q ss_pred CCCCCCC
Q 019396 150 APYYPFH 156 (341)
Q Consensus 150 aP~FP~~ 156 (341)
.|||.-.
T Consensus 113 NpyF~N~ 119 (264)
T 2zd7_A 113 EGDFKEQ 119 (264)
T ss_dssp TTTBCCE
T ss_pred CCCccCC
Confidence 5777753
No 48
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=26.80 E-value=12 Score=37.07 Aligned_cols=7 Identities=14% Similarity=0.710 Sum_probs=4.2
Q ss_pred CCCCCCC
Q 019396 150 APYYPFH 156 (341)
Q Consensus 150 aP~FP~~ 156 (341)
.|||.-.
T Consensus 240 NpYF~N~ 246 (417)
T 2ayu_A 240 NPFFTND 246 (417)
T ss_dssp CSSBCCS
T ss_pred CccccCC
Confidence 5677653
No 49
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=26.68 E-value=41 Score=26.35 Aligned_cols=48 Identities=17% Similarity=0.281 Sum_probs=32.3
Q ss_pred CCCcccCCCCCHHHHHHHhc--ccCCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHHHhc
Q 019396 46 TAPFLQLPHFTEAVIKKIAR--KVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQM 105 (341)
Q Consensus 46 ~spLlQLPh~~~~~v~kl~~--~v~tl~~L~~m~~~er~~lL~~~~~ls~~~~~~v~~v~~~ 105 (341)
...|.+||++.+..+++|-. +..++.+|..+ .|+.++.++.+...+..
T Consensus 25 ~~eL~~lpGIG~~~A~~IV~~GpF~s~edL~~V------------~Gig~~~~e~l~~~l~~ 74 (97)
T 3arc_U 25 IAAFIQYRGLYPTLAKLIVKNAPYESVEDVLNI------------PGLTERQKQILRENLEH 74 (97)
T ss_dssp GGGGGGSTTCTTHHHHHHHHHCCCSSGGGGGGC------------TTCCHHHHHHHHHTGGG
T ss_pred HHHHhHCCCCCHHHHHHHHHcCCCCCHHHHHhc------------cCCCHHHHHHHHHHhce
Confidence 46788999999988887765 56677766543 34666665655554444
No 50
>2wnv_C C1Q chain C, complement C1Q subcomponent subunit C; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_C 2wnu_C* 2jg9_C* 1pk6_C
Probab=26.20 E-value=46 Score=26.89 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=18.7
Q ss_pred EEEEcCCCCceeEEEEEEcCC
Q 019396 229 GKIQAPAEGNYNLTCYCLCDS 249 (341)
Q Consensus 229 l~F~aP~~G~~~l~l~v~SDs 249 (341)
..|++|.+|.|.|...+.+..
T Consensus 42 G~Ftap~~G~Y~Fs~~~~~~~ 62 (131)
T 2wnv_C 42 GKFTCKVPGLYYFVYHASHTA 62 (131)
T ss_dssp TEEECSSCEEEEEEEEEEESS
T ss_pred CEEEcccCCEEEEEEEEEECC
Confidence 589999999999999998864
No 51
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=26.13 E-value=97 Score=24.16 Aligned_cols=35 Identities=17% Similarity=0.238 Sum_probs=28.6
Q ss_pred cCCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHH
Q 019396 67 VRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMV 102 (341)
Q Consensus 67 v~tl~~L~~m~~~er~~lL~~~~~ls~~~~~~v~~v 102 (341)
..|..++.+|+.++...+|.. .+|++.|+..+..+
T Consensus 30 Pfs~~eIv~lpv~efn~lLk~-~~Ls~~Ql~~ir~~ 64 (92)
T 1skn_P 30 PVSAFQISEMSLSELQQVLKN-ESLSEYQRQLIRKI 64 (92)
T ss_dssp SSCHHHHHHSCHHHHHHHHHH-SCCCHHHHHHHHHH
T ss_pred CCCHHHHHHCcHHHHHHHHHh-CCCCHHHHHHHHHH
Confidence 357899999999999999976 78999988766543
No 52
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=25.00 E-value=2.9e+02 Score=31.31 Aligned_cols=18 Identities=17% Similarity=0.121 Sum_probs=13.5
Q ss_pred EEEEEECCCCeEEEEeee
Q 019396 162 WFLLADSVSNNVWFSQKV 179 (341)
Q Consensus 162 wvvlgD~~~n~Il~~krv 179 (341)
-|.|.|++.++|..+..+
T Consensus 141 ~v~i~dp~g~~i~~~~~~ 158 (1451)
T 4acq_A 141 LVYIQDPKGNRIAQWQSF 158 (1451)
T ss_dssp EEEEECTTSCEEEEEEEE
T ss_pred EEEEECCCCCEEEEeeec
Confidence 467889999988865444
No 53
>1mg7_A Early switch protein XOL-1 2.2K splice form; alpha-beta, gene regulation; 1.55A {Caenorhabditis elegans} SCOP: d.14.1.6 d.58.26.6
Probab=23.64 E-value=86 Score=30.31 Aligned_cols=54 Identities=11% Similarity=-0.019 Sum_probs=28.9
Q ss_pred EEEEEEcCCCCceeEEEEEEcCCCcccceEEEEEEEeeccCccCCCCccccCCC
Q 019396 227 VMGKIQAPAEGNYNLTCYCLCDSWLGCDKRTNLKVKILKRTRAGTRGGIVSEEG 280 (341)
Q Consensus 227 v~l~F~aP~~G~~~l~l~v~SDsYlG~D~~~~i~l~V~~~~~~~~~~~~~~~~~ 280 (341)
..+.|.+=+||+--|-+.+.+-.-+--...+-+.+.|.+.+...|....++.++
T Consensus 334 t~IsF~LLqp~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (417)
T 1mg7_A 334 SSVSFDLLKLGPGASLVTLANSRRFEPECRVVLQIEVKPVSPGETSSEGISDEH 387 (417)
T ss_dssp CEEEEEEECBCBCCEECCTTTGGGSCCEEEEEEEEEEEECC-------------
T ss_pred eEEEeeccccCCCceEEEeccccccCccceEEEEEEEeecCCCcccccccccch
Confidence 446777766666566666666666777777888888888776555444444443
No 54
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=23.51 E-value=79 Score=26.36 Aligned_cols=49 Identities=16% Similarity=0.286 Sum_probs=33.6
Q ss_pred CCCcccCCCCCHHHHHHHhc--ccCCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHHHhcC
Q 019396 46 TAPFLQLPHFTEAVIKKIAR--KVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMM 106 (341)
Q Consensus 46 ~spLlQLPh~~~~~v~kl~~--~v~tl~~L~~m~~~er~~lL~~~~~ls~~~~~~v~~v~~~~ 106 (341)
...|.|||++-+...++|-. +..++.+|.+. .|+.+++.+.+.+...+|
T Consensus 62 ~~eL~~LpGiGp~~A~~II~~GpF~svedL~~V------------~GIg~k~~e~l~~~~~~~ 112 (134)
T 1s5l_U 62 IAAFIQYRGLYPTLAKLIVKNAPYESVEDVLNI------------PGLTERQKQILRENLEHF 112 (134)
T ss_dssp GGGGGGSTTCTHHHHHHHHHTCCCSSGGGGGGC------------TTCCHHHHHHHHHHHTTE
T ss_pred HHHHHHCCCCCHHHHHHHHHcCCCCCHHHHHhC------------CCCCHHHHHHHHHhhcce
Confidence 34689999999998888765 56777776554 356666666655555443
No 55
>2r5o_A Putative ATP binding component of ABC- transporter; immunoglobulin fold, carbohydrate binding, domain swapping, O antigen export; HET: PG4; 1.30A {Escherichia coli}
Probab=23.48 E-value=99 Score=26.26 Aligned_cols=41 Identities=15% Similarity=0.203 Sum_probs=27.9
Q ss_pred eEEEEEEcC-CCCceeEEEEEEcCC-Ccc---cceEEE-EEEEeecc
Q 019396 226 LVMGKIQAP-AEGNYNLTCYCLCDS-WLG---CDKRTN-LKVKILKR 266 (341)
Q Consensus 226 ~v~l~F~aP-~~G~~~l~l~v~SDs-YlG---~D~~~~-i~l~V~~~ 266 (341)
.+.+.|.+| .+|.|.+.+.|.+.. +-+ .|+... +.|+|...
T Consensus 125 ~v~f~f~l~L~~G~Y~lsv~i~~~~~~~~~~~~d~~~da~~F~V~~~ 171 (188)
T 2r5o_A 125 VFKFSLPVDLNSGDYLLSFGISAGNPQTDMTPLDRRYDSIILHVTKS 171 (188)
T ss_dssp EEEEEEECCBCSEEEEEEEEEEEEETTTEEEEEEEEEEEEEEEEECS
T ss_pred EEEEEEecccCCCeEEEEEEEecCCcCCCcEEEEEEccEEEEEEecC
Confidence 456677777 699999999998765 211 355544 67888543
No 56
>2vzp_A Aocbm35, EXO-beta-D-glucosaminidase; family 35, CSXA, glucuronic acid, hydrolase; 1.05A {Amycolatopsis orientalis} PDB: 2vzq_A* 2vzr_A*
Probab=22.69 E-value=90 Score=24.51 Aligned_cols=34 Identities=15% Similarity=0.292 Sum_probs=24.7
Q ss_pred eEEEEEEcCCCCceeEEEEEEcCCCcccceEEEEEE
Q 019396 226 LVMGKIQAPAEGNYNLTCYCLCDSWLGCDKRTNLKV 261 (341)
Q Consensus 226 ~v~l~F~aP~~G~~~l~l~v~SDsYlG~D~~~~i~l 261 (341)
.++..+.+|..|.|.+.++..+.. |.+....|.+
T Consensus 40 ~v~~~V~v~~aG~Y~l~~rya~~~--~~~~~~~l~V 73 (127)
T 2vzp_A 40 SVEWTVTVPSAGTYDVVVRYANGT--TTSRPLDFSV 73 (127)
T ss_dssp EEEEEEEESSSEEEEEEEEEECCS--SSCCCEEEEE
T ss_pred EEEEEEEcCCCCEEEEEEEEEcCC--CCCeEEEEEE
Confidence 466778889999999999999854 3344444444
No 57
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=22.45 E-value=18 Score=32.73 Aligned_cols=53 Identities=8% Similarity=0.171 Sum_probs=0.0
Q ss_pred CCCcccCCCCCHHHHHHHhcccCCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHHH
Q 019396 46 TAPFLQLPHFTEAVIKKIARKVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVL 103 (341)
Q Consensus 46 ~spLlQLPh~~~~~v~kl~~~v~tl~~L~~m~~~er~~lL~~~~~ls~~~~~~v~~v~ 103 (341)
.++|..+||+.+...++|.+...|+..+...+.+++.++ + +.+..++.+..++
T Consensus 172 ~s~L~~IpGIG~k~ak~Ll~~FGSl~~i~~As~eeL~~V-G----IG~~~A~~I~~~f 224 (226)
T 3c65_A 172 HSVLDDIPGVGEKRKKALLNYFGSVKKMKEATVEELQRA-N----IPRAVAEKIYEKL 224 (226)
T ss_dssp ----------------------------------------------------------
T ss_pred cccccccCCCCHHHHHHHHHHhCCHHHHHhCCHHHHHHc-C----CCHHHHHHHHHHh
Confidence 578888999988888877766667777777776666555 3 5555555555443
No 58
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=21.36 E-value=20 Score=32.71 Aligned_cols=56 Identities=5% Similarity=0.150 Sum_probs=0.0
Q ss_pred CCCCcccCCCCCHHHHHHHhc-ccCCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHHHh
Q 019396 45 GTAPFLQLPHFTEAVIKKIAR-KVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQ 104 (341)
Q Consensus 45 ~~spLlQLPh~~~~~v~kl~~-~v~tl~~L~~m~~~er~~lL~~~~~ls~~~~~~v~~v~~ 104 (341)
..+.|.++|++.+..+.+|-. ++.++.+|...+.+++..+ .|+..+..+.+...+.
T Consensus 13 ~~~~L~~IpGIGpk~a~~Ll~~gf~sve~L~~a~~~eL~~v----~GIG~ktAe~I~~~l~ 69 (241)
T 1vq8_Y 13 EYTELTDISGVGPSKAESLREAGFESVEDVRGADQSALADV----SGIGNALAARIKADVG 69 (241)
T ss_dssp -------------------------------------------------------------
T ss_pred chhHHhcCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHhc----cCCCHHHHHHHHHHHH
Confidence 457899999999998888766 5788888876666665544 3465555555554443
No 59
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=20.95 E-value=3.3e+02 Score=21.92 Aligned_cols=43 Identities=14% Similarity=0.193 Sum_probs=24.2
Q ss_pred CCCeEEEEEeeeeeccCCCCCCCccCCCCCCCCcccEEEEEEECCCCeEEE
Q 019396 125 EGDIVTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWFLLADSVSNNVWF 175 (341)
Q Consensus 125 ~g~~vtl~~~V~L~R~n~~~~~~~~aP~FP~~K~E~WwvvlgD~~~n~Il~ 175 (341)
.|+.+.+. ++|+... ..+..=.|+-.+. +=++|-|...++||.
T Consensus 16 ~g~~v~~~--ltv~N~s----~~~v~l~f~Sgq~--~Df~v~d~~G~~Vwr 58 (120)
T 3isy_A 16 EPEQIKFN--MSLKNQS----ERAIEFQFSTGQK--FELVVYDSEHKERYR 58 (120)
T ss_dssp CSSCEEEE--EEEEECS----SSCEEEEESSSCC--EEEEEECTTCCEEEE
T ss_pred CCCeEEEE--EEEEcCC----CCcEEEEeCCCCE--EEEEEECCCCCEEEE
Confidence 45567777 6666321 1233334554443 336666878889985
No 60
>3jqw_A COLH protein, collagenase; beta-barrel, dual calcium site, cell adhesion; 2.00A {Clostridium histolyticum} SCOP: b.23.2.0 PDB: 3jqx_A
Probab=20.90 E-value=1.2e+02 Score=24.46 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=18.5
Q ss_pred eEEEEEEcCCCCceeEEEEEEcC
Q 019396 226 LVMGKIQAPAEGNYNLTCYCLCD 248 (341)
Q Consensus 226 ~v~l~F~aP~~G~~~l~l~v~SD 248 (341)
.+..+|.++.||+|.+.|+=-++
T Consensus 84 ~~~~~~~~~~pGkYYl~Vy~y~~ 106 (121)
T 3jqw_A 84 NLSGKFKADKPGRYYIHLYMFNG 106 (121)
T ss_dssp EEEEEEEECSCEEEEEEEEEEEC
T ss_pred EEEEEEEeCCCeeEEEEEEEecC
Confidence 46678999999999999986443
No 61
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=20.58 E-value=11 Score=37.15 Aligned_cols=6 Identities=17% Similarity=0.706 Sum_probs=2.9
Q ss_pred HHHHHH
Q 019396 80 DRAELL 85 (341)
Q Consensus 80 er~~lL 85 (341)
.|..++
T Consensus 134 KR~eII 139 (417)
T 2ayu_A 134 QRSRII 139 (417)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444554
No 62
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A*
Probab=20.43 E-value=1.8e+02 Score=28.41 Aligned_cols=57 Identities=18% Similarity=0.083 Sum_probs=41.7
Q ss_pred CCcccCCCCCHHHHHHHhc-ccCCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHHHhcCCcee
Q 019396 47 APFLQLPHFTEAVIKKIAR-KVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMPSLT 110 (341)
Q Consensus 47 spLlQLPh~~~~~v~kl~~-~v~tl~~L~~m~~~er~~lL~~~~~ls~~~~~~v~~v~~~~P~I~ 110 (341)
-|+.-||++.....++|.+ +|.|+++|..++ ..+... |.......+++.+.-+..-.
T Consensus 282 lpv~~l~GiG~~~~~~L~~lGI~T~gdL~~~~-~~L~~~------fG~~~~~~l~~~a~G~d~~~ 339 (459)
T 1t94_A 282 LPIRKVSGIGKVTEKMLKALGIITCTELYQQR-ALLSLL------FSETSWHYFLHISLGLGSTH 339 (459)
T ss_dssp CBGGGCTTSCHHHHHHHHHTTCCBHHHHHHTH-HHHHHH------SCHHHHHHHHHHHTTCCCSC
T ss_pred CCHHhcCCcCHHHHHHHHHcCCCcHHHHHhhH-HHHHHH------hChHhHHHHHHHHcCCCCcc
Confidence 5899999999999999988 999999999874 444333 34444566667776665444
No 63
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=20.13 E-value=87 Score=28.15 Aligned_cols=50 Identities=18% Similarity=0.267 Sum_probs=38.7
Q ss_pred CCcccCCCCCHHHHHHHhcccCCHHHHHcCCHHHHHHHHhhccCCCh-HHHHHHHHH
Q 019396 47 APFLQLPHFTEAVIKKIARKVRTFQELRDMSLQDRAELLSQVGGFSS-TEVQDVEMV 102 (341)
Q Consensus 47 spLlQLPh~~~~~v~kl~~~v~tl~~L~~m~~~er~~lL~~~~~ls~-~~~~~v~~v 102 (341)
++|..+||+.+...++|.+...++..+...+.+++.++++ + ..++.+..+
T Consensus 168 s~LdgIpGIG~k~ak~Ll~~FgSl~~i~~As~EeL~~VIG------~~~~A~~I~~~ 218 (220)
T 2nrt_A 168 SVLDNVPGIGPIRKKKLIEHFGSLENIRSASLEEIARVIG------STEIARRVLDI 218 (220)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHCSHHHHHTSCHHHHHHHHT------CHHHHHHHHHH
T ss_pred ccccCCCCcCHHHHHHHHHHcCCHHHHHhCCHHHHHHHhC------hHHHHHHHHHH
Confidence 6788899999999998888777999999999888877633 4 445555443
No 64
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=20.10 E-value=22 Score=33.91 Aligned_cols=32 Identities=28% Similarity=0.541 Sum_probs=0.0
Q ss_pred CCccCCCCCcccccccccCCcCCcccccchhh
Q 019396 281 PIVEDGAEEEEEDEEEEYDDYESEYSEDEEDE 312 (341)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 312 (341)
+..+.+-++|+++|++....+.-|.+||+|++
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (335)
T 4fp9_B 304 DNDEDDNDEDDDDEDDDEAEDNDEDEDDDEEE 335 (335)
T ss_dssp --------------------------------
T ss_pred cccCccccCCCccccccccccccccccccccC
No 65
>4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ...
Probab=20.10 E-value=86 Score=30.54 Aligned_cols=55 Identities=7% Similarity=0.049 Sum_probs=40.2
Q ss_pred CCcccCCCCCHHHHHH-Hhc-ccCCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHHHhcCC
Q 019396 47 APFLQLPHFTEAVIKK-IAR-KVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMP 107 (341)
Q Consensus 47 spLlQLPh~~~~~v~k-l~~-~v~tl~~L~~m~~~er~~lL~~~~~ls~~~~~~v~~v~~~~P 107 (341)
-|+..||++...+.++ +.+ +|.|+.+|..++...+...++ ......+...+.-+.
T Consensus 253 lpv~~l~GiG~~~~~~lL~~lGI~TigdLa~~~~~~L~~~fG------~~~g~~L~~~a~G~d 309 (435)
T 4ecq_A 253 MPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFG------EKNGSWLYAMCRGIE 309 (435)
T ss_dssp CBGGGSTTCSSHHHHHHHHHHTCCBGGGGGGSCHHHHHHHHC------HHHHHHHHHHTTTCC
T ss_pred CCHHHhcCCCHHHHHHHHHHcCCCcHHHHhhCCHHHHHHHhC------ccHHHHHHHHhhCCC
Confidence 4778888998776555 566 899999999999888776654 234556666665554
Done!