Query 019397
Match_columns 341
No_of_seqs 220 out of 887
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 09:08:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019397.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019397hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01237 Oxysterol_BP: Oxyster 100.0 9.8E-76 2.1E-80 575.5 21.8 254 68-325 1-255 (354)
2 KOG2209 Oxysterol-binding prot 100.0 4.2E-76 9.1E-81 556.2 9.3 269 65-339 40-346 (445)
3 KOG1737 Oxysterol-binding prot 100.0 1.7E-72 3.6E-77 588.4 21.7 323 8-338 372-698 (799)
4 KOG2210 Oxysterol-binding prot 100.0 1.5E-60 3.2E-65 467.8 16.2 242 62-304 30-283 (392)
5 PF12915 DUF3833: Protein of u 75.7 7.3 0.00016 35.0 5.8 61 258-326 21-90 (164)
6 PF02084 Bindin: Bindin; Inte 61.8 15 0.00034 34.5 5.0 52 68-125 104-155 (238)
7 PF14254 DUF4348: Domain of un 40.7 36 0.00077 33.0 4.0 42 223-264 224-266 (273)
8 PF02202 Tachykinin: Tachykini 40.6 7.4 0.00016 19.7 -0.3 9 329-337 2-10 (11)
9 PRK06655 flgD flagellar basal 28.1 3.3E+02 0.0072 25.5 8.2 17 272-288 127-143 (225)
10 PF14714 KH_dom-like: KH-domai 23.6 81 0.0018 24.6 2.8 21 163-183 30-50 (80)
11 PF10504 DUF2452: Protein of u 22.0 76 0.0016 28.4 2.5 25 141-165 84-109 (159)
12 KOG1693 emp24/gp25L/p24 family 20.5 3.1E+02 0.0067 25.6 6.2 43 251-296 42-84 (209)
13 PRK12812 flgD flagellar basal 20.4 4.4E+02 0.0096 25.3 7.6 9 195-203 108-116 (259)
No 1
>PF01237 Oxysterol_BP: Oxysterol-binding protein ; InterPro: IPR000648 A number of eukaryotic proteins that seem to be involved with sterol synthesis and/or its regulation have been found [] to be evolutionary related. These include mammalian oxysterol-binding protein (OSBP), a protein of about 800 amino-acid residues that binds a variety of oxysterols (oxygenated derivatives of cholesterol); yeast OSH1, a protein of 859 residues that also plays a role in ergosterol synthesis; yeast proteins HES1 and KES1, highly related proteins of 434 residues that seem to play a role in ergosterol synthesis; and yeast hypothetical proteins YHR001w, YHR073w and YKR003w.; PDB: 3SPW_A 1ZI7_C 1ZHW_A 1ZHX_A 1ZHY_A 1ZHZ_A 1ZHT_A.
Probab=100.00 E-value=9.8e-76 Score=575.51 Aligned_cols=254 Identities=40% Similarity=0.690 Sum_probs=213.9
Q ss_pred hHHHHHHhccCccccCCcccCceeeccCchhHHhhhcccchHhhhcccCCCChhHHHHHHHHHhhhhhhh-ccccCCCCC
Q 019397 68 NYWKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIYFA-YRRAWKPFN 146 (341)
Q Consensus 68 siw~~lk~~iGkDLts~islPv~~~EP~S~Lq~~ae~~ey~~lL~~Aa~~~Dp~eRm~~V~~f~lS~~~~-~~r~~KPfN 146 (341)
|+|++||+++|+||++ |+||++|+||+|+|||+||+|+|++||++|++++||++||++|++|++|+|+. ..|.+||||
T Consensus 1 s~w~~lK~~~G~dLs~-islPv~~~eP~S~Lqr~~~~~~y~~lL~~Aa~~~d~~eR~~~V~~f~~S~~~~~~~~~~KPfN 79 (354)
T PF01237_consen 1 SIWSFLKQKIGKDLSR-ISLPVFFNEPRSFLQRLAEDFEYPDLLDKAAEEDDPLERMLYVAAFALSSYSSTPGRTKKPFN 79 (354)
T ss_dssp HHHHHHHHT--S-GGG-S---GGGEEEEEGGGGGGGGSSSHHHHHGGGGS-HHHHHHHHHHHHHHHHHHHHHHHHHEEE-
T ss_pred CHHHHhhhcCCCChhc-CccCceecCCCcHHHhhhhhhhChHHHhccCCCCCHHHHHHHHHHHHHhhhhhhcCCCCcCcC
Confidence 6999999999999986 99999999999999999999999999999999999999999999999999987 567889999
Q ss_pred CCCCceEEEEecCcEEEEEeecccCCCeeEEEEeCCcEEEEEEeeeeeEEEeeEEEEEEeeEEEEEEcccceEEEEeCCC
Q 019397 147 PVLGETFEMVNHGGVTFIAEQVSHHPPMSAGHAENEHFIYDVTSKLRTKFLGNSIDVYPVGRTRVTLKRDGVVLDLVPPP 226 (341)
Q Consensus 147 PiLGETFe~~~~~g~~fiaEQVSHHPPISAf~~e~~~~~~~~~~~~kskF~G~Sv~v~~~G~~~i~l~~~gE~Y~~t~P~ 226 (341)
||||||||+..+++++|+||||||||||||||++|++|.++|+..+++||+||||++.+.|..+|+|.++||+|+|++|+
T Consensus 80 PiLGETfe~~~~~~~~~~aEQVSHHPPisa~~~~~~~~~~~g~~~~~~kf~g~sv~~~~~G~~~i~f~~~~e~Y~~~~p~ 159 (354)
T PF01237_consen 80 PILGETFELVRPDGTRFIAEQVSHHPPISAFHAEGRGWKFYGHIEPKSKFWGNSVEVNPIGKVTITFPDGGETYTWTKPT 159 (354)
T ss_dssp --TT-EE--TT-T-EEEEEEEEETTTTEEEEEEEETTEEEEEEEEEEEEE-TT-EEEEEEEEEEEEET--TEEEEEE--S
T ss_pred CCCcceeeeccCceEEEEEecccCCCCceEEEEEcCCEEEEEEEeeeEEEeceEEEEEECCcEEEEEcCCceEEEEecCc
Confidence 99999999987679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEeeecCceeEecCCCEEEEeCCCCCEEEEEEeeCccccCcceEEEEEEECCCCCeeEEEEEEECCeEEEEeCCCCCC
Q 019397 227 TKVHNLIFGRTWIDSPGDMVMTNLTTGDKVVLYFQPCGWFGAGRYEVDGYVYDAAEQPKILMTGKWNESMSYQPCDSEGE 306 (341)
Q Consensus 227 ~~v~gli~G~~~ie~~G~~~I~~~~tg~~a~i~F~~~g~~g~~~~~V~G~V~~~~g~~~~~i~G~W~~~i~~~~~~~~g~ 306 (341)
++|+|||+|++|+|+.|+|+|+|.+||++|+|+|+++||||++.+.|+|+|++.+++++++|+|+||+.|.++..+...
T Consensus 160 ~~i~gi~~G~~~~e~~G~~~i~~~~tg~~~~i~f~~~~~f~~~~~~v~G~I~~~~~~~~~~i~G~W~~~i~~~~~~~~~- 238 (354)
T PF01237_consen 160 TYIRGIIFGKRYIEHVGKMVITCHKTGLKAEIEFKPKGWFSGKSNEVEGKIYDSKGKPIYKISGKWDEEIYIKDVKNDS- 238 (354)
T ss_dssp EEEESTTTTS-EEEEESEEEEEET-TS-EEEEEEETSSSTSSSTTEEEEEEESSGGG-SEEEEEETTSEEEEEETT----
T ss_pred EEEeeeecccEEEEecCCEEEEcCCcceEEEEEEecCCcccccceeeEEEEEEccCceeEEeeeeeCCeEEEEeccccc-
Confidence 9999999999999999999999999999999999999999999999999999988899999999999999999876422
Q ss_pred cccccccccceeecccCCc
Q 019397 307 PLPGTELKEVSLVILSFFG 325 (341)
Q Consensus 307 ~~~~~~~~~lW~~~~~~~~ 325 (341)
...+.+.+|++++.|+.
T Consensus 239 --~~~~~~~lw~~~~~~~~ 255 (354)
T PF01237_consen 239 --DTGESKLLWDANPLPPN 255 (354)
T ss_dssp ---GGGEEEEEETTTS-SS
T ss_pred --cCCCceEEEECCCCccc
Confidence 23456789999887653
No 2
>KOG2209 consensus Oxysterol-binding protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.2e-76 Score=556.16 Aligned_cols=269 Identities=35% Similarity=0.608 Sum_probs=245.9
Q ss_pred cchhHHHHHHhccCccccCCcccCceeeccCchhHHhhhcccchHhhhcccCCCChhHHHHHHHHHhhhhhhh-ccccCC
Q 019397 65 ERDNYWKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIYFA-YRRAWK 143 (341)
Q Consensus 65 ~~~siw~~lk~~iGkDLts~islPv~~~EP~S~Lq~~ae~~ey~~lL~~Aa~~~Dp~eRm~~V~~f~lS~~~~-~~r~~K 143 (341)
+..|||++||++||+||+ +|+|||+||||+|||||++|+|+|..||.+|+.+.||+|||.+|+||++|...+ -.|..|
T Consensus 40 ~d~SIW~Ilr~ciGkelS-kiTmPV~~NEPLSFLQRltEyme~~yLi~kAs~~~~p~eRmqyVAAFAvsavas~weR~gK 118 (445)
T KOG2209|consen 40 NDFSIWSILRKCIGKELS-KITMPVIFNEPLSFLQRLTEYMEHTYLIHKASSQSDPVERMQYVAAFAVSAVASQWERTGK 118 (445)
T ss_pred ccccHHHHHHhhhchhhh-heeeeeeeCCcHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhHHHhcC
Confidence 558999999999999995 599999999999999999999999999999999999999999999999999976 468999
Q ss_pred CCCCCCCceEEEEec-CcEEEEEeecccCCCeeEEEEe--CCcEEEEEEeeeeeEEEeeEEEEEEeeEEEEEEcccceEE
Q 019397 144 PFNPVLGETFEMVNH-GGVTFIAEQVSHHPPMSAGHAE--NEHFIYDVTSKLRTKFLGNSIDVYPVGRTRVTLKRDGVVL 220 (341)
Q Consensus 144 PfNPiLGETFe~~~~-~g~~fiaEQVSHHPPISAf~~e--~~~~~~~~~~~~kskF~G~Sv~v~~~G~~~i~l~~~gE~Y 220 (341)
|||||||||||+.++ .|+|||||||||||||||||+| |..|.+.|+..++-||||+||++.|.|.+.|+|+++||.|
T Consensus 119 PFNPLl~et~el~r~dlg~R~i~EQVSHHPPiSAfhaEgl~~dF~fhGsi~PklkFWgksvea~Pkgtitle~~k~nEaY 198 (445)
T KOG2209|consen 119 PFNPLLGETYELEREDLGFRFISEQVSHHPPISAFHAEGLNNDFIFHGSIYPKLKFWGKSVEAEPKGTITLELLKHNEAY 198 (445)
T ss_pred CCcchhhhhhhheecccceEEeehhhccCCChhHhhhcccCcceEEeeeecccceeccceeecCCCceEEEEecccCcce
Confidence 999999999999885 4999999999999999999999 7889999999999999999999999999999999999999
Q ss_pred EEeCCCceEEeeecCceeEecCCCEEEEeCCCCCEEEEEEeeCccccCcceEEEEEEECCCCCeeEEEEEEECCeEEEEe
Q 019397 221 DLVPPPTKVHNLIFGRTWIDSPGDMVMTNLTTGDKVVLYFQPCGWFGAGRYEVDGYVYDAAEQPKILMTGKWNESMSYQP 300 (341)
Q Consensus 221 ~~t~P~~~v~gli~G~~~ie~~G~~~I~~~~tg~~a~i~F~~~g~~g~~~~~V~G~V~~~~g~~~~~i~G~W~~~i~~~~ 300 (341)
+|+.|+++|+|||+|++|||.+|+|.|.|++||++|+++|+++|+||+..|+|+|+|+|++.++++.|.|+|.+.|...+
T Consensus 199 tWtnp~CcvhNiIvGklwieqyg~~eI~nh~Tg~~~vl~Fk~~G~~gk~lHkVEG~i~d~~k~kl~~lYGkWTe~l~~cd 278 (445)
T KOG2209|consen 199 TWTNPTCCVHNIIVGKLWIEQYGNVEIINHKTGHKCVLNFKPCGLFGKELHKVEGHIQDKSKKKLCALYGKWTECLYSCD 278 (445)
T ss_pred eccCCcceeeeehhhhhhHhhcCcEEEEecCccceeEEecccccccccchhheeehhhccccccchhhhccHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999988889999999999886533
Q ss_pred C------------------------C---CCCCccccc-------ccccceeecccCCcCCccCccccccccc
Q 019397 301 C------------------------D---SEGEPLPGT-------ELKEVSLVILSFFGCLYPLLAKFYSVKS 339 (341)
Q Consensus 301 ~------------------------~---~~g~~~~~~-------~~~~lW~~~~~~~~~~~~~~~~~~~~~~ 339 (341)
. . .+..|++++ ..+.||+++|.||+| |+.|-||+
T Consensus 279 ~esf~~~~Kq~~r~~~~r~~s~~~~~see~dd~P~~ds~~v~~iPgSk~LW~~n~rP~n~-----~~~y~FT~ 346 (445)
T KOG2209|consen 279 PESFDAFKKQDKRNTEERKNSKQMSTSEELDDMPVPDSESVFIIPGSKLLWRINPRPPNS-----AQMYNFTS 346 (445)
T ss_pred HHHHHHHHHhhhhcchhhhhhccCCchhhccCCCCCCcceeEecCCCeEEEEecCCCCCH-----HHhhchhh
Confidence 1 0 012243332 235799999998765 78888775
No 3
>KOG1737 consensus Oxysterol-binding protein [Lipid transport and metabolism]
Probab=100.00 E-value=1.7e-72 Score=588.44 Aligned_cols=323 Identities=39% Similarity=0.574 Sum_probs=289.8
Q ss_pred CCCcchheehhhhhhhhhhhcccccccCCCCCCcccCCCCC-CcchhhhhhhcccccccchhHHHHHHhccCccccCCcc
Q 019397 8 QGGGFFASIAAGWSTFGSAMSKSVNGLLGYEGLEVVNPEGS-TEDAEDEARRGRWKQEERDNYWKMMQKYIGADVQSLVT 86 (341)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~siw~~lk~~iGkDLts~is 86 (341)
.+.+++.+.+|.+...+++...++++..........++++. .++...+......+++.+.++|++||++||+||+ +|+
T Consensus 372 ~~s~~~~s~~s~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~rr~~lp~~~~~~~~islw~~~k~~iGkDls-kv~ 450 (799)
T KOG1737|consen 372 EGSEDEESYTSDISDNGSSDALSADGDKSSQALNEKVPSGSGAEVARRTNLPAPSKPSSSISLWSILRNNIGKDLS-KVS 450 (799)
T ss_pred cccccccccccccccCCCccccccccccccccccccccccccccccccccCCCCcCcCCCccHHHHHhhccccccc-ccc
Confidence 34557888887777778887777777777766666666652 2222222222223566778999999999999998 599
Q ss_pred cCceeeccCchhHHhhhcccchHhhhcccCCCChhHHHHHHHHHhhhhhh-hccccCCCCCCCCCceEEEEec-CcEEEE
Q 019397 87 LPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIYF-AYRRAWKPFNPVLGETFEMVNH-GGVTFI 164 (341)
Q Consensus 87 lPv~~~EP~S~Lq~~ae~~ey~~lL~~Aa~~~Dp~eRm~~V~~f~lS~~~-~~~r~~KPfNPiLGETFe~~~~-~g~~fi 164 (341)
|||.||||+|+|||++|.|||++||++|++.+||++||++|++|++|+|. ...|.+|||||||||||||.+. +|+|||
T Consensus 451 ~PV~~nEP~S~LQr~~EdlEYs~LLd~A~~~~d~~~R~~~vaafavS~Ya~t~~r~~KPFNPlLgETyE~~r~dkg~rf~ 530 (799)
T KOG1737|consen 451 MPVEFNEPLSLLQRVAEDLEYSELLDKAANYEDPLERMVYVAAFAVSSYSSTSRRTAKPFNPLLGETYEMDRPDKGLRFF 530 (799)
T ss_pred cceecCCcchHHHHhhhhccchhhhHHHHhcCCcHHHHHHHHHHHhhhcchhcccccCCCCcccccceEeeccCCceeee
Confidence 99999999999999999999999999999999999999999999999994 4678999999999999999984 489999
Q ss_pred EeecccCCCeeEEEEeCCcEEEEEEeeeeeEEEeeEEEEEEeeEEEEEEcccceEEEEeCCCceEEeeecCceeEecCCC
Q 019397 165 AEQVSHHPPMSAGHAENEHFIYDVTSKLRTKFLGNSIDVYPVGRTRVTLKRDGVVLDLVPPPTKVHNLIFGRTWIDSPGD 244 (341)
Q Consensus 165 aEQVSHHPPISAf~~e~~~~~~~~~~~~kskF~G~Sv~v~~~G~~~i~l~~~gE~Y~~t~P~~~v~gli~G~~~ie~~G~ 244 (341)
+|||||||||+|+|||+++|.++++..+++||||+||+|.|.|..+|+|++.|++|+|.+|++.|+|||+|++|+|+.|.
T Consensus 531 sEqVSHhPPi~A~h~es~~w~~~~ds~~~sKF~Gksi~v~P~G~l~l~~~~~G~~~~w~kvtt~v~nii~Gk~~~D~~ge 610 (799)
T KOG1737|consen 531 SEQVSHHPPISACHAESNNWTFWGDSKVKSKFWGKSIEVPPLGILHVTLKNIGEHYSWAKVTTTVHNIILGKLWVDHYGE 610 (799)
T ss_pred eeeeccCCCcccccccCCCceeeccccccccccccceeecCCceEEEEEcCCCccccccCccceecceeecccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCC-CEEEEEEeeCccccCcceEEEEEEECCCCCeeEEEEEEECCeEEEEeCCCCCCcccccccccceeecccC
Q 019397 245 MVMTNLTTG-DKVVLYFQPCGWFGAGRYEVDGYVYDAAEQPKILMTGKWNESMSYQPCDSEGEPLPGTELKEVSLVILSF 323 (341)
Q Consensus 245 ~~I~~~~tg-~~a~i~F~~~g~~g~~~~~V~G~V~~~~g~~~~~i~G~W~~~i~~~~~~~~g~~~~~~~~~~lW~~~~~~ 323 (341)
|.|++++++ ++|.|+|++.+||+.+.++|+|.|+|.+|++++++.|+||+.|++..++..|.+.+++..+++|++++.|
T Consensus 611 ~~i~n~~~~~~~c~L~F~~~~~~~~~~~ev~g~V~~~s~~~~~~l~GkW~e~~~~~~~~~~~~~~~~~~~~~iWk~~~~P 690 (799)
T KOG1737|consen 611 MEITNHTTGSDKCKLKFVKAGYFSRNAREVEGSVRNKSGKKVEVLTGKWDESLYYFKVDKVGLPEPETSEKLIWKANDLP 690 (799)
T ss_pred EEEecCCCCcceeEEEEeeecccCCCcceeEEEEeCCCCceeEEEeeeehhhhhhccccccccccCCccceeeeecCCCC
Confidence 999999999 7999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CcCCccCcccccccc
Q 019397 324 FGCLYPLLAKFYSVK 338 (341)
Q Consensus 324 ~~~~~~~~~~~~~~~ 338 (341)
++ +.|+||
T Consensus 691 kn-------~~y~ft 698 (799)
T KOG1737|consen 691 KN-------NKYNFT 698 (799)
T ss_pred CC-------cccccc
Confidence 87 556655
No 4
>KOG2210 consensus Oxysterol-binding protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-60 Score=467.79 Aligned_cols=242 Identities=28% Similarity=0.416 Sum_probs=224.0
Q ss_pred ccccchhHHHHHHh-ccCccccCCcccCceeeccCchhHHhhhcccchHhhhcccCCCChhHHHHHHHHHhhhhhhhccc
Q 019397 62 KQEERDNYWKMMQK-YIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIYFAYRR 140 (341)
Q Consensus 62 ~~~~~~siw~~lk~-~iGkDLts~islPv~~~EP~S~Lq~~ae~~ey~~lL~~Aa~~~Dp~eRm~~V~~f~lS~~~~~~r 140 (341)
.++.+..+|.++++ .+|+||++ |+||+|++||+|+||++++++.|+|||..|...+||++||+.|++|++|+++...+
T Consensus 30 ~e~~~s~i~~L~sq~rpg~DLs~-v~LPtfile~rs~Le~~~~~~~~~dll~~~~~~~~p~~R~~~VvkwylS~~~~~~~ 108 (392)
T KOG2210|consen 30 LEEGKSIILDLLSQLRPGMDLSR-VVLPTFILEPRSLLEKYTDFSYHPDLLLEASSEADPLERMLAVVKWYLSGFHAGPK 108 (392)
T ss_pred hhhccceeecHhhhccCCCCccc-ccchhhhhhhHHHHHHhhhhhhccchhcccccCCCHHHHhhhheeeeehhcccccc
Confidence 35567788999866 79999985 99999999999999999999999999999999999999999999999999998665
Q ss_pred -cCCCCCCCCCceEEEEec-------CcEEEEEeecccCCCeeEEEEeCC--cEEEEEEeeeeeEEEeeEEEEEEeeEEE
Q 019397 141 -AWKPFNPVLGETFEMVNH-------GGVTFIAEQVSHHPPMSAGHAENE--HFIYDVTSKLRTKFLGNSIDVYPVGRTR 210 (341)
Q Consensus 141 -~~KPfNPiLGETFe~~~~-------~g~~fiaEQVSHHPPISAf~~e~~--~~~~~~~~~~kskF~G~Sv~v~~~G~~~ 210 (341)
.+|||||||||||+|.|. ..+.|+||||||||||||||++++ ++.++|..++|+||.|+|+.|.+.|..+
T Consensus 109 ~~~~PyNPILGEtF~~~w~~~~~p~~~~~~~iAEQVSHHPPvSAf~~~~~~~~i~v~g~v~~kSkF~G~s~~V~~~G~~~ 188 (392)
T KOG2210|consen 109 GRKKPYNPILGETFTCHWKYPPHPSKGDTVFVAEQVSHHPPVSAFYVTCPKKGIQVDGHVWAKSKFLGNSIAVAMIGKGV 188 (392)
T ss_pred cccCCCCccchhhcccccccCCCCCCceEEEEeecccCCCCcceeeEEccccCeEEEEEEeecccccccceeEEEcCCcE
Confidence 456999999999999872 569999999999999999999986 5899999999999999999999999999
Q ss_pred EEEcccceEEEEeCCCceEEeeecCceeEecCCCEEEEeCCCCCEEEEEEeeCccccCcceEEEEEEECCC-CCeeEEEE
Q 019397 211 VTLKRDGVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTNLTTGDKVVLYFQPCGWFGAGRYEVDGYVYDAA-EQPKILMT 289 (341)
Q Consensus 211 i~l~~~gE~Y~~t~P~~~v~gli~G~~~ie~~G~~~I~~~~tg~~a~i~F~~~g~~g~~~~~V~G~V~~~~-g~~~~~i~ 289 (341)
++|.+++|+|.+|+|.++++|+|+|.+|+|++|++.|.|++|++.+.++|..++|+|+.++.+.+.|+... .+..+.|+
T Consensus 189 l~ll~~~E~Y~~t~P~~~~rg~~~~~p~velggkv~I~c~kt~~~a~~~~~~~~f~g~~~s~~~~~ik~~~~~~~~~~i~ 268 (392)
T KOG2210|consen 189 LKLLDHDETYLITFPNAYARGILLGAPWVELGGKVVIECPKTGLSAILESILKPFLGGKNSFNARSIKGPIDKKDFCSIS 268 (392)
T ss_pred EEEEecCcceeeccCCceeeeeeeccceEecCceEEEEcCCcceeeeEeeccCcccccccccceEEEEcccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998654 34567899
Q ss_pred EEECCeEEEEeCCCC
Q 019397 290 GKWNESMSYQPCDSE 304 (341)
Q Consensus 290 G~W~~~i~~~~~~~~ 304 (341)
|+||+.|++++.+..
T Consensus 269 G~W~~~~~~k~~~~~ 283 (392)
T KOG2210|consen 269 GEWDGVMYAKYAKSG 283 (392)
T ss_pred eeecccEEEEEcCCC
Confidence 999999999987653
No 5
>PF12915 DUF3833: Protein of unknown function (DUF3833); InterPro: IPR024409 This is a family of uncharacterised proteins found in Proteobacteria.
Probab=75.68 E-value=7.3 Score=34.95 Aligned_cols=61 Identities=16% Similarity=0.196 Sum_probs=41.0
Q ss_pred EEEeeCccccCcceEEEEEEECCCCCee----EEEEEEECCeEE-----EEeCCCCCCcccccccccceeecccCCcC
Q 019397 258 LYFQPCGWFGAGRYEVDGYVYDAAEQPK----ILMTGKWNESMS-----YQPCDSEGEPLPGTELKEVSLVILSFFGC 326 (341)
Q Consensus 258 i~F~~~g~~g~~~~~V~G~V~~~~g~~~----~~i~G~W~~~i~-----~~~~~~~g~~~~~~~~~~lW~~~~~~~~~ 326 (341)
=.|...-+|.|+ -.-.|.|.|..|+.. ..|.|+|++..- +.+.|++ +.+++|+..+..+|.
T Consensus 21 P~~~l~~fF~G~-~~A~G~~~dr~G~v~rrF~v~i~g~w~g~~~tL~E~F~y~DGe-------~q~R~W~l~~~~~g~ 90 (164)
T PF12915_consen 21 PKFDLEEFFNGK-LVAWGMFQDRSGKVTRRFTVDIDGSWDGNTGTLDEDFVYDDGE-------TQTRVWTLTKTGDGS 90 (164)
T ss_pred CccCHHHHCCCc-EEEEEEEECCCCCEEEEEEEEEEEEEECCEEEEEEEEEECCCC-------EEEEEEEEEECCCCc
Confidence 345666677654 467899999998853 469999998541 2333322 456799998876654
No 6
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=61.77 E-value=15 Score=34.50 Aligned_cols=52 Identities=27% Similarity=0.370 Sum_probs=36.1
Q ss_pred hHHHHHHhccCccccCCcccCceeeccCchhHHhhhcccchHhhhcccCCCChhHHHH
Q 019397 68 NYWKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLV 125 (341)
Q Consensus 68 siw~~lk~~iGkDLts~islPv~~~EP~S~Lq~~ae~~ey~~lL~~Aa~~~Dp~eRm~ 125 (341)
.++.-||-.+|. |+ |-|||-||.|.-+==-+-..=.|+.|| |.+-||.-|=.
T Consensus 104 Kvm~~ikavLga--TK-iDLPVDINDPYDlGLLLRhLRHHSNLL---AnIgdP~Vreq 155 (238)
T PF02084_consen 104 KVMEDIKAVLGA--TK-IDLPVDINDPYDLGLLLRHLRHHSNLL---ANIGDPEVREQ 155 (238)
T ss_pred HHHHHHHHHhcc--cc-cccccccCChhhHHHHHHHHHHHHHHH---hhcCCHHHHHH
Confidence 466677777786 43 899999999987533333333577888 46778888744
No 7
>PF14254 DUF4348: Domain of unknown function (DUF4348); PDB: 3SBU_A.
Probab=40.74 E-value=36 Score=32.96 Aligned_cols=42 Identities=26% Similarity=0.536 Sum_probs=26.3
Q ss_pred eCCCceEEeeecCceeEecCCCE-EEEeCCCCCEEEEEEeeCc
Q 019397 223 VPPPTKVHNLIFGRTWIDSPGDM-VMTNLTTGDKVVLYFQPCG 264 (341)
Q Consensus 223 t~P~~~v~gli~G~~~ie~~G~~-~I~~~~tg~~a~i~F~~~g 264 (341)
.+|.-.+.||+.|..|.+-..++ .|+.-.+|+..+|.|+.+|
T Consensus 224 ~lP~~~i~NI~YGQky~~s~~KIl~~rGi~NG~e~~l~Fk~~~ 266 (273)
T PF14254_consen 224 ELPKGKIYNINYGQKYTESNQKILVFRGIANGLETELYFKKRG 266 (273)
T ss_dssp ---SSEEEEEESS----T-SEEEEEEEESSS--EEEEEEEEET
T ss_pred cCCccceeeeecccccCCCCceEEEEEeecCceeEEEEEEEcC
Confidence 57899999999999999955554 4556789999999999764
No 8
>PF02202 Tachykinin: Tachykinin family; InterPro: IPR002040 This family includes peptides, which belong to the tachykinin family. Tachykinins [, , ] are a group of biologically active peptides which excite neurons, evoke behavioral responses, are potent vasodilatators and contract (directly or indirectly) many smooth muscles. Tachykinins, like most other active peptides, are synthesized as larger protein precursors that are enzymatically converted to their mature forms. Tachykinins are from ten to twelve residues long.; GO: 0007217 tachykinin receptor signaling pathway, 0007268 synaptic transmission; PDB: 1MYU_A 1N6T_A 2GFR_A.
Probab=40.60 E-value=7.4 Score=19.69 Aligned_cols=9 Identities=33% Similarity=0.792 Sum_probs=6.9
Q ss_pred cCccccccc
Q 019397 329 PLLAKFYSV 337 (341)
Q Consensus 329 ~~~~~~~~~ 337 (341)
|++++|||+
T Consensus 2 p~pd~F~GL 10 (11)
T PF02202_consen 2 PKPDQFYGL 10 (11)
T ss_dssp -CHHHHCCC
T ss_pred CCcccceec
Confidence 678899996
No 9
>PRK06655 flgD flagellar basal body rod modification protein; Reviewed
Probab=28.13 E-value=3.3e+02 Score=25.46 Aligned_cols=17 Identities=24% Similarity=0.114 Sum_probs=8.4
Q ss_pred EEEEEEECCCCCeeEEE
Q 019397 272 EVDGYVYDAAEQPKILM 288 (341)
Q Consensus 272 ~V~G~V~~~~g~~~~~i 288 (341)
.|+-.|+|.+|+.+.++
T Consensus 127 ~vti~I~D~~G~~Vrt~ 143 (225)
T PRK06655 127 NVTVTITDSAGQVVRTI 143 (225)
T ss_pred EEEEEEEcCCCCEEEEE
Confidence 45555555555544433
No 10
>PF14714 KH_dom-like: KH-domain-like of EngA bacterial GTPase enzymes, C-terminal; PDB: 2HJG_A 1MKY_A.
Probab=23.56 E-value=81 Score=24.64 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=16.7
Q ss_pred EEEeecccCCCeeEEEEeCCc
Q 019397 163 FIAEQVSHHPPMSAGHAENEH 183 (341)
Q Consensus 163 fiaEQVSHHPPISAf~~e~~~ 183 (341)
+++-||+..||.-+++|-+++
T Consensus 30 ~Y~tQv~~~PPtFv~f~N~~~ 50 (80)
T PF14714_consen 30 YYATQVGTRPPTFVLFVNDPE 50 (80)
T ss_dssp EEEEEEETTTTEEEEEES-CC
T ss_pred EEEEeCCCCCCEEEEEeCCcc
Confidence 456699999999999987653
No 11
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=21.95 E-value=76 Score=28.41 Aligned_cols=25 Identities=20% Similarity=0.555 Sum_probs=19.1
Q ss_pred cCCCCCCCCCceEEEEe-cCcEEEEE
Q 019397 141 AWKPFNPVLGETFEMVN-HGGVTFIA 165 (341)
Q Consensus 141 ~~KPfNPiLGETFe~~~-~~g~~fia 165 (341)
.+==|.|+.|+||.+.. ++|..|++
T Consensus 84 A~cnF~pipG~iYhLY~r~~G~~ylS 109 (159)
T PF10504_consen 84 AKCNFEPIPGQIYHLYRRENGQDYLS 109 (159)
T ss_pred cccCceecCCCEEEEEECCCCCEEEE
Confidence 34568999999999876 56766665
No 12
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.49 E-value=3.1e+02 Score=25.58 Aligned_cols=43 Identities=19% Similarity=0.175 Sum_probs=31.7
Q ss_pred CCCCEEEEEEeeCccccCcceEEEEEEECCCCCeeEEEEEEECCeE
Q 019397 251 TTGDKVVLYFQPCGWFGAGRYEVDGYVYDAAEQPKILMTGKWNESM 296 (341)
Q Consensus 251 ~tg~~a~i~F~~~g~~g~~~~~V~G~V~~~~g~~~~~i~G~W~~~i 296 (341)
+++.++.++|+-- .|+.+.|+-.|.+++|+++++-.++=-+..
T Consensus 42 ~~~~~~~~~fqV~---tGG~fDVD~~I~aPdgkvI~~~~kk~~~~~ 84 (209)
T KOG1693|consen 42 KDDDTTSFEFQVQ---TGGHFDVDYDIEAPDGKVIYSEKKKRYDSF 84 (209)
T ss_pred cCCceEEEEEEEE---eCCceeeEEEEECCCCCEEeeccccccccE
Confidence 4566688999863 346789999999999999887666543333
No 13
>PRK12812 flgD flagellar basal body rod modification protein; Reviewed
Probab=20.41 E-value=4.4e+02 Score=25.34 Aligned_cols=9 Identities=33% Similarity=0.386 Sum_probs=4.5
Q ss_pred EEEeeEEEE
Q 019397 195 KFLGNSIDV 203 (341)
Q Consensus 195 kF~G~Sv~v 203 (341)
.+-|+.|.+
T Consensus 108 slIGk~V~v 116 (259)
T PRK12812 108 SALGKMATV 116 (259)
T ss_pred HhcCCEEEE
Confidence 455555443
Done!