Query 019397
Match_columns 341
No_of_seqs 220 out of 887
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 15:27:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019397.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019397hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zhx_A KES1 protein; oxysterol 100.0 1E-71 3.4E-76 558.5 26.6 253 64-326 8-303 (438)
2 2c5i_P Vacuolar protein sortin 39.1 7.8 0.00027 23.9 0.4 10 165-174 1-10 (29)
3 3sbu_A Hypothetical NTF2-like 31.3 44 0.0015 30.7 4.2 42 223-264 205-248 (261)
4 1mw5_A Hypothetical protein HI 18.4 41 0.0014 27.9 1.3 44 76-120 111-169 (187)
5 3c12_A FLGD, flagellar protein 15.2 3E+02 0.01 22.0 5.9 46 269-314 37-86 (138)
6 2lll_A Lamin-B2; immunoglobuli 15.1 4.9E+02 0.017 21.4 7.5 80 198-287 33-124 (139)
7 2v2f_A Penicillin binding prot 13.7 94 0.0032 17.8 1.7 14 275-288 7-20 (26)
8 1ufg_A Lamin A, nuclear lamin; 11.8 6.4E+02 0.022 20.9 7.8 61 217-287 76-140 (151)
9 1ifr_A Lamin A/C; immunoglobul 10.4 6.3E+02 0.022 20.0 7.1 61 217-287 45-109 (121)
10 1zxu_A AT5G01750 protein; PFAM 10.3 3.4E+02 0.012 23.3 5.1 15 276-290 79-93 (217)
No 1
>1zhx_A KES1 protein; oxysterol,sterol binding protein, lipid binding protein; HET: HC3; 1.50A {Saccharomyces cerevisiae} SCOP: d.338.1.1 PDB: 1zht_A* 1zhw_A* 1zhy_A* 1zhz_A* 3spw_A* 1zi7_A
Probab=100.00 E-value=1e-71 Score=558.49 Aligned_cols=253 Identities=23% Similarity=0.366 Sum_probs=228.9
Q ss_pred ccchhHHHHHHhccCc---cccCCcccCceeeccCchhHHhhhcccchHhhhcccCCC----------C------hhHHH
Q 019397 64 EERDNYWKMMQKYIGA---DVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECE----------D------PYMRL 124 (341)
Q Consensus 64 ~~~~siw~~lk~~iGk---DLts~islPv~~~EP~S~Lq~~ae~~ey~~lL~~Aa~~~----------D------p~eRm 124 (341)
+.+.++|+.++++||+ ||++ |+||++||||+|+||+++++|+|++||++|+..+ | |++||
T Consensus 8 ~~~~s~w~~~lK~i~k~g~DLSk-IslPv~i~EP~SlLE~~~~~~e~~dLL~~aa~~~~~~~~a~~~~D~~~~~~p~eRm 86 (438)
T 1zhx_A 8 YASSSSWTSFLKSIASFNGDLSS-LSAPPFILSPISLTEFSQYWAEHPELFLEPSFINDDNYKEHCLIDPEVESPELARM 86 (438)
T ss_dssp HTTSHHHHHHHHTTTTCCSCGGG-SCCCGGGEEEEEGGGGGGGGCSCHHHHHGGGGCCTTTGGGSCTTCTTCSCHHHHHH
T ss_pred cccccHHHHHHHHhhhcCCChhh-cccCchhcCCccHHHHHHHhhhhHHHHhhhhhcccccccccccCCccccCCHHHHH
Confidence 3678999887777765 9975 9999999999999999999999999999888766 9 99999
Q ss_pred HHHHHHhhhhhhh-c-------cccCCCCCCCCCceEEEEecC------c-EEEEEeecccCCCeeEEEEeCC--cEEEE
Q 019397 125 VYASSWALSIYFA-Y-------RRAWKPFNPVLGETFEMVNHG------G-VTFIAEQVSHHPPMSAGHAENE--HFIYD 187 (341)
Q Consensus 125 ~~V~~f~lS~~~~-~-------~r~~KPfNPiLGETFe~~~~~------g-~~fiaEQVSHHPPISAf~~e~~--~~~~~ 187 (341)
++|++|++|+|+. + .+.+|||||||||||||.+++ | ++|||||||||||||||||+|+ +|.++
T Consensus 87 ~~V~af~lS~~~~~y~~~~~~~~~~kKPfNPiLGETFe~~~~d~~~~~~g~~~~iaEQVSHHPPISA~~~e~~~~g~~~~ 166 (438)
T 1zhx_A 87 LAVTKWFISTLKSQYCSRNESLGSEKKPLNPFLGELFVGKWENKEHPEFGETVLLSEQVSHHPPVTAFSIFNDKNKVKLQ 166 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCEEECCCTTCEEEEEECCTTCTTTCCEEEEEEEEEETTEEEEEEEEETTTTEEEE
T ss_pred HHHHHHHHhhhhhhcccccccccccccCcCCcccceEEEEecCccCCCCCcEEEEEEeccCCCCeeEEEEEcCCCCEEEE
Confidence 9999999999864 2 467999999999999999853 5 8999999999999999999997 59999
Q ss_pred EEeeeeeEEEee-EEEEEEeeEEEEEEcccceEEEEeCCCceEEeeecCceeEecCCCEEEEeCCCCCEEEEEEeeCccc
Q 019397 188 VTSKLRTKFLGN-SIDVYPVGRTRVTLKRDGVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTNLTTGDKVVLYFQPCGWF 266 (341)
Q Consensus 188 ~~~~~kskF~G~-Sv~v~~~G~~~i~l~~~gE~Y~~t~P~~~v~gli~G~~~ie~~G~~~I~~~~tg~~a~i~F~~~g~~ 266 (341)
|+..+++||+|| ||+|.+.|+++|+|. ||+|+|++|+++|+|||+|++|+|++|+|.|+| +||++|+|+|+++|||
T Consensus 167 g~~~~kskF~G~~Sv~v~~~G~~~l~l~--~E~Y~~t~P~~~v~gIi~G~~~vE~~G~~~I~~-~tg~~~~l~F~~kg~f 243 (438)
T 1zhx_A 167 GYNQIKASFTKSLMLTVKQFGHTMLDIK--DESYLVTPPPLHIEGILVASPFVELEGKSYIQS-STGLLCVIEFSGRGYF 243 (438)
T ss_dssp EEEEEEEEECTTCCEEEEEECCEEEEET--TEEEEEECCCEEEECTTTTCCEEEECSEEEEEE-TTSCEEEEEEECSSSS
T ss_pred EEeeeEEEEcCceEEEEEcceEEEEEEC--CcEEEEecCcEEEEEEEecceeEecCCeEEEEc-CCCCEEEEEEcCCCCc
Confidence 999999999999 999999999999997 899999999999999999999999999999999 7999999999999999
Q ss_pred cCcceEEEEEEECC------CCCeeEEEEEEECCeEEEEeCCCCCCcccccccccceeecccCCcC
Q 019397 267 GAGRYEVDGYVYDA------AEQPKILMTGKWNESMSYQPCDSEGEPLPGTELKEVSLVILSFFGC 326 (341)
Q Consensus 267 g~~~~~V~G~V~~~------~g~~~~~i~G~W~~~i~~~~~~~~g~~~~~~~~~~lW~~~~~~~~~ 326 (341)
|++.|.|+|+|++. +++++++|+|+|++.|+++.... +.+..++|++++.|+..
T Consensus 244 ~g~~n~v~G~I~~~~~~~~~~~~~l~~i~G~W~~~l~i~~~~~------~~~~~~~~~~~~~~~~~ 303 (438)
T 1zhx_A 244 SGKKNSFKARIYKDSKDSKDKEKALYTISGQWSGSSKIIKANK------KEESRLFYDAARIPAEH 303 (438)
T ss_dssp CSSSSEEEEEEESSTTGGGCGGGCSEEEEEETTSEEEEEETTC------GGGCEEEEETTTSCCCC
T ss_pred CCCccEEEEEEEcCCcccCCCCcEEEEEEEEEcceEEEEeCCC------CccceEEeccCCCCCcc
Confidence 99999999999984 56789999999999999987542 11245799998876643
No 2
>2c5i_P Vacuolar protein sorting protein 51; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.3A {Saccharomyces cerevisiae}
Probab=39.13 E-value=7.8 Score=23.86 Aligned_cols=10 Identities=50% Similarity=0.773 Sum_probs=2.9
Q ss_pred EeecccCCCe
Q 019397 165 AEQVSHHPPM 174 (341)
Q Consensus 165 aEQVSHHPPI 174 (341)
|||+||--|+
T Consensus 1 aeqItHKK~l 10 (29)
T 2c5i_P 1 AEQISHKKSL 10 (29)
T ss_dssp ------CCCC
T ss_pred CccccccCCc
Confidence 6999998775
No 3
>3sbu_A Hypothetical NTF2-like protein; cystatin-like, structural genomics, joint center for structu genomics, JCSG, protein structure initiative; HET: MLY; 2.15A {Bacteroides fragilis}
Probab=31.31 E-value=44 Score=30.74 Aligned_cols=42 Identities=19% Similarity=0.374 Sum_probs=33.9
Q ss_pred eCCCceEEeeecCcee-EecCCCE-EEEeCCCCCEEEEEEeeCc
Q 019397 223 VPPPTKVHNLIFGRTW-IDSPGDM-VMTNLTTGDKVVLYFQPCG 264 (341)
Q Consensus 223 t~P~~~v~gli~G~~~-ie~~G~~-~I~~~~tg~~a~i~F~~~g 264 (341)
.+|.-.+.||+.|..| .+-..++ .|+.-.+|+..+|.|+.++
T Consensus 205 ~lP~~~i~NI~YGQky~~~s~~KIl~~rGi~NG~e~~l~Fkk~~ 248 (261)
T 3sbu_A 205 ALPADXLSNINYGQQNDDNASHKILALXGIGNGFSNILYFQRXD 248 (261)
T ss_dssp CCCSSEEEEEESSCCCCTTCSEEEEEEEESSSCCEEEEEEEEET
T ss_pred ccCcccceeeeccccccCCCCceEEEEEeecCceeEEEEEeecC
Confidence 4699999999999999 5555554 5566799999999999764
No 4
>1mw5_A Hypothetical protein HI1480; structural genomics, structure 2 function project, S2F, unknown function; HET: MSE; 2.10A {Haemophilus influenzae} SCOP: d.259.1.1
Probab=18.43 E-value=41 Score=27.91 Aligned_cols=44 Identities=34% Similarity=0.607 Sum_probs=31.6
Q ss_pred ccCc---cccCCcccCceeeccCchhHHhhh------------cccchHhhhcccCCCCh
Q 019397 76 YIGA---DVQSLVTLPVFISEPNSVLQRMAE------------LMEYSHLLDLADECEDP 120 (341)
Q Consensus 76 ~iGk---DLts~islPv~~~EP~S~Lq~~ae------------~~ey~~lL~~Aa~~~Dp 120 (341)
+||. ||+. ++.|.+++-|.|+-.|+.- .|+|.+-|+--.+..||
T Consensus 111 kigsepldlsn-lpapfyvllpesfaaritllvqdkalpyvrvsmeywhaleykgelndp 169 (187)
T 1mw5_A 111 KIGSEPLDLSN-LPAPFYVLLPESFAARITLLVQDKALPYVRVSMEYWHALEYKGELNDP 169 (187)
T ss_dssp HHHHSCCEETT-EECCEEEEEESSHHHHHHHHHHCSEEEEEEEEEEEGGGGSCCCSCC--
T ss_pred cccCCCccccc-CCCceeEeccHHhhhHhhhhhhcccCceeeeeHHHHHHHHhccccCCh
Confidence 4775 8865 7999999999999888753 37888877654455554
No 5
>3c12_A FLGD, flagellar protein; HOOK capping, IG-like domain, FN-III domain, tudor-like domain, flagellar biogenesis, flagellum; 2.51A {Xanthomonas campestris PV}
Probab=15.16 E-value=3e+02 Score=22.03 Aligned_cols=46 Identities=13% Similarity=0.075 Sum_probs=27.6
Q ss_pred cceEEEEEEECCCCCeeEEEE-EEECC---eEEEEeCCCCCCcccccccc
Q 019397 269 GRYEVDGYVYDAAEQPKILMT-GKWNE---SMSYQPCDSEGEPLPGTELK 314 (341)
Q Consensus 269 ~~~~V~G~V~~~~g~~~~~i~-G~W~~---~i~~~~~~~~g~~~~~~~~~ 314 (341)
....++-.|+|.+|+.+.++. |.=.. .+.+.-.+.+|.+++.+.+.
T Consensus 37 ~a~~v~v~I~d~~G~~V~t~~~~~~~aG~~~~~WDg~d~~G~~~~~G~Y~ 86 (138)
T 3c12_A 37 SAGFVNFEITDANGTFVKQLSVPASAAGEVSFAWDGTDANGNRMAAGKYG 86 (138)
T ss_dssp SSEEEEEEEECSSCCEEEEEEEEESSSEEEEEEECSBCTTSCBCCSEEEE
T ss_pred CCCEEEEEEEeCCCCEEEEEEcCCcCCceEEEEECCcCCCCCCCCCceEE
Confidence 346788899999999877776 32111 11111124567777766654
No 6
>2lll_A Lamin-B2; immunoglobulin-like fold, structural protein, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=15.09 E-value=4.9e+02 Score=21.36 Aligned_cols=80 Identities=11% Similarity=0.158 Sum_probs=46.4
Q ss_pred eeEEEEEEeeEEEEEEc--------ccceEEEEeCCCceEEeeecCceeEecCCCEEEEeCCCCCE----EEEEEeeCcc
Q 019397 198 GNSIDVYPVGRTRVTLK--------RDGVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTNLTTGDK----VVLYFQPCGW 265 (341)
Q Consensus 198 G~Sv~v~~~G~~~i~l~--------~~gE~Y~~t~P~~~v~gli~G~~~ie~~G~~~I~~~~tg~~----a~i~F~~~g~ 265 (341)
|..|.+...|...+.|. ...+...|++|.-++ +.-.+.++|-....|-. ..|.++...-
T Consensus 33 GefV~L~N~s~~~~~L~GW~L~r~v~g~~~~~y~Fp~~~~---------L~pg~~VtIws~~~g~~~~pp~dlv~~~q~s 103 (139)
T 2lll_A 33 GKFVQLKNNSDKDQSLGNWRIKRQVLEGEEIAYKFTPKYI---------LRAGQMVTVWAAGAGVAHSPPSTLVWKGQSS 103 (139)
T ss_dssp CSEEEEEECSSSCEECSSCEEEEEETTSCEEEEECCTTCE---------ECTTCEEEEEEGGGTCCCBTTTEEEETTCSS
T ss_pred CCEEEEEECCCCccccCCCEEEEecCCCccEEEEECCCcE---------ECCCCEEEEEeCCCCCCCCCchhEEEecccc
Confidence 45566666554443332 233568888887332 23345667766544432 3677865553
Q ss_pred ccCcceEEEEEEECCCCCeeEE
Q 019397 266 FGAGRYEVDGYVYDAAEQPKIL 287 (341)
Q Consensus 266 ~g~~~~~V~G~V~~~~g~~~~~ 287 (341)
|+.+. .+.-.++|++|+.+..
T Consensus 104 Wg~G~-~~~T~L~n~~GEevAt 124 (139)
T 2lll_A 104 WGTGE-SFRTVLVNADGEEVAM 124 (139)
T ss_dssp SSCCS-EEEEEEECTTSCEEEE
T ss_pred cCCCC-CEEEEEECCCCCEEEE
Confidence 44333 4667889999997765
No 7
>2v2f_A Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc5_A* 2zc6_A*
Probab=13.67 E-value=94 Score=17.82 Aligned_cols=14 Identities=21% Similarity=0.249 Sum_probs=11.2
Q ss_pred EEEECCCCCeeEEE
Q 019397 275 GYVYDAAEQPKILM 288 (341)
Q Consensus 275 G~V~~~~g~~~~~i 288 (341)
-.|||.+|+.+..+
T Consensus 7 s~IYD~~g~~i~~l 20 (26)
T 2v2f_A 7 SKIYDNKNQLIADL 20 (26)
T ss_pred CEEEeCCCCEeeec
Confidence 47899999887777
No 8
>1ufg_A Lamin A, nuclear lamin; immunoglobulin like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: b.1.16.1
Probab=11.76 E-value=6.4e+02 Score=20.95 Aligned_cols=61 Identities=10% Similarity=0.183 Sum_probs=36.0
Q ss_pred ceEEEEeCCCceEEeeecCceeEecCCCEEEEeCCCCCE----EEEEEeeCccccCcceEEEEEEECCCCCeeEE
Q 019397 217 GVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTNLTTGDK----VVLYFQPCGWFGAGRYEVDGYVYDAAEQPKIL 287 (341)
Q Consensus 217 gE~Y~~t~P~~~v~gli~G~~~ie~~G~~~I~~~~tg~~----a~i~F~~~g~~g~~~~~V~G~V~~~~g~~~~~ 287 (341)
++...|++|.-++ +.-...++|-....|.. ..|.++...-|+.+. .+.-.++|++|+.+..
T Consensus 76 ~~~~~y~Fp~~~~---------L~pg~tVtIws~~~g~~~~pp~dlv~k~q~sWg~G~-~~~T~L~n~~GEevA~ 140 (151)
T 1ufg_A 76 DPLMTYRFPPKFT---------LKAGQVVTIWASGAGATHSPPTDLVWKAQNTWGCGS-SLRTALINSTGEEVAM 140 (151)
T ss_dssp SCCEEEECCTTCE---------ECTTCEEEEEESSSSCCCCTTTEEEECSSSCSCCSS-EEEEEEECSSSCEEEE
T ss_pred CccEEEEECCCcE---------ECCCCEEEEEeCCCCCCCCCchhEEEecccccCCCC-CEEEEEECCCCCEEEE
Confidence 4457788876332 23345566666544422 367886554344333 4666889999987654
No 9
>1ifr_A Lamin A/C; immunoglobulin, immune system; 1.40A {Homo sapiens} SCOP: b.1.16.1 PDB: 1ivt_A 3gef_A
Probab=10.38 E-value=6.3e+02 Score=20.03 Aligned_cols=61 Identities=11% Similarity=0.198 Sum_probs=36.5
Q ss_pred ceEEEEeCCCceEEeeecCceeEecCCCEEEEeCCCCCE----EEEEEeeCccccCcceEEEEEEECCCCCeeEE
Q 019397 217 GVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTNLTTGDK----VVLYFQPCGWFGAGRYEVDGYVYDAAEQPKIL 287 (341)
Q Consensus 217 gE~Y~~t~P~~~v~gli~G~~~ie~~G~~~I~~~~tg~~----a~i~F~~~g~~g~~~~~V~G~V~~~~g~~~~~ 287 (341)
.+...|++|.-++ +.-..+++|-....|.. ..|.++...-|+.+. .+.-.++|++|+.+..
T Consensus 45 ~~~~~y~Fp~~~~---------L~pg~~vtIws~~~g~~~~pp~dlv~~~~~sWg~g~-~~~t~L~n~~GeevA~ 109 (121)
T 1ifr_A 45 DPLLTYRFPPKFT---------LKAGQVVTIWAAGAGATHSPPTDLVWKAQNTWGCGN-SLRTALINSTGEEVAM 109 (121)
T ss_dssp SCCEEEECCSSCE---------ECTTCEEEEEETTSSCCCBTTTEEEETTCSCCCCSS-CEEEEEECTTSCEEEE
T ss_pred CccEEEEeCCCcE---------ECCCCEEEEEeCCCCCCCCCchhEEEecccccCCCC-CeEEEEECCCCCEEEE
Confidence 3457778876332 23345667777655532 367776554344333 4667889999987654
No 10
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=10.26 E-value=3.4e+02 Score=23.30 Aligned_cols=15 Identities=13% Similarity=0.350 Sum_probs=10.3
Q ss_pred EEECCCCCeeEEEEE
Q 019397 276 YVYDAAEQPKILMTG 290 (341)
Q Consensus 276 ~V~~~~g~~~~~i~G 290 (341)
.|+|.+|+++.+|.=
T Consensus 79 ~l~D~~G~~l~~i~r 93 (217)
T 1zxu_A 79 VLLDGSGTPVVTLRE 93 (217)
T ss_dssp EEECTTSCEEEEEEC
T ss_pred EEECCCCCEEEEEEc
Confidence 677888887666543
Done!