Query 019399
Match_columns 341
No_of_seqs 220 out of 2011
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 15:29:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019399.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019399hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ewk_A Sensor protein; PAS dom 100.0 1.4E-29 4.7E-34 209.3 21.1 201 31-335 2-211 (227)
2 2gj3_A Nitrogen fixation regul 99.8 2.6E-18 8.8E-23 126.6 16.0 118 16-137 3-120 (120)
3 4hia_A LOV protein; PAS, HTH, 99.7 3.8E-17 1.3E-21 128.6 14.9 126 16-142 5-130 (176)
4 2pr5_A Blue-light photorecepto 99.7 6.1E-17 2.1E-21 121.2 14.1 119 22-143 3-121 (132)
5 3f1p_B ARYL hydrocarbon recept 99.7 2.3E-17 8E-22 121.5 11.2 115 20-138 4-120 (121)
6 4f3l_A Mclock, circadian locom 99.7 6.8E-17 2.3E-21 141.8 16.0 75 253-330 253-327 (361)
7 1n9l_A PHOT-LOV1, putative blu 99.7 2.1E-16 7.2E-21 114.2 15.0 108 27-135 2-109 (109)
8 3mr0_A Sensory box histidine k 99.7 1.3E-16 4.4E-21 121.1 13.6 125 15-143 6-132 (142)
9 3ue6_A Aureochrome1; PAS/LOV d 99.7 2E-16 6.7E-21 123.0 14.2 121 15-139 32-155 (166)
10 3t50_A Blue-light-activated hi 99.7 3.5E-16 1.2E-20 116.0 13.7 117 23-143 2-121 (128)
11 3f1p_A Endothelial PAS domain- 99.7 1.3E-16 4.5E-21 116.6 9.6 108 27-138 8-116 (117)
12 3p7n_A Sensor histidine kinase 99.7 7.1E-16 2.4E-20 129.3 14.9 120 15-138 60-182 (258)
13 4eet_B Phototropin-2; LOV, blu 99.7 2.1E-15 7.4E-20 109.0 14.7 111 23-137 2-115 (115)
14 3nja_A Probable ggdef family p 99.7 9.3E-16 3.2E-20 112.8 11.6 120 15-138 4-125 (125)
15 3rty_A Period circadian protei 99.7 1.4E-15 4.9E-20 131.0 14.3 73 252-327 155-232 (339)
16 3lyx_A Sensory BOX/ggdef domai 99.6 5.5E-15 1.9E-19 107.8 14.9 120 15-138 4-123 (124)
17 3mqq_A Transcriptional regulat 99.6 7.3E-16 2.5E-20 113.2 9.9 115 19-139 4-119 (120)
18 2z6d_A Phototropin-2; PAS-fold 99.6 1.2E-14 4E-19 106.8 15.7 121 16-140 4-127 (130)
19 4f3l_B BMAL1B; BHLH, PAS, circ 99.6 1.6E-15 5.5E-20 134.2 12.8 74 252-328 279-353 (387)
20 1d06_A Nitrogen fixation regul 99.6 6E-15 2.1E-19 109.9 13.6 124 4-134 3-130 (130)
21 3sw1_A Sensory box protein; li 99.6 7.9E-15 2.7E-19 113.4 13.6 124 16-143 23-149 (162)
22 3h9w_A Diguanylate cyclase wit 99.6 2.3E-15 7.8E-20 109.6 9.9 111 27-140 2-113 (115)
23 2r78_A Sensor protein; sensory 99.6 3E-14 1E-18 104.1 15.3 110 15-134 8-117 (117)
24 2vv6_A FIXL, sensor protein FI 99.6 1.4E-14 4.9E-19 106.0 12.9 112 26-143 1-116 (119)
25 3luq_A Sensor protein; PAS, hi 99.6 2.7E-14 9.1E-19 103.1 13.1 111 18-134 3-114 (114)
26 3mxq_A Sensor protein; PSI2, M 99.6 7.2E-15 2.5E-19 112.1 10.1 120 15-139 19-150 (152)
27 3k3c_A Protein RV1364C/MT1410; 99.6 9.3E-15 3.2E-19 112.6 10.2 123 15-143 14-142 (158)
28 2wkq_A NPH1-1, RAS-related C3 99.6 2.8E-14 9.5E-19 124.2 14.2 117 22-142 15-134 (332)
29 3ewk_A Sensor protein; PAS dom 99.6 6.8E-14 2.3E-18 114.9 14.7 111 18-132 111-227 (227)
30 3kx0_X Uncharacterized protein 99.6 4.4E-14 1.5E-18 112.1 12.7 122 15-142 34-161 (185)
31 3icy_A Sensor protein; sensory 99.5 1.7E-14 5.9E-19 104.9 9.1 114 17-134 3-118 (118)
32 2kdk_A ARYL hydrocarbon recept 99.5 1.1E-13 3.8E-18 101.4 12.3 112 22-137 7-120 (121)
33 2v0u_A NPH1-1, LOV2; kinase, t 99.5 1.7E-13 5.8E-18 102.9 12.7 115 21-139 5-122 (146)
34 3bwl_A Sensor protein; structu 99.5 1E-12 3.4E-17 96.9 14.8 120 5-134 5-126 (126)
35 1n9l_A PHOT-LOV1, putative blu 99.5 5.8E-14 2E-18 101.2 7.5 86 250-335 2-90 (109)
36 3olo_A Two-component sensor hi 99.5 5.3E-13 1.8E-17 96.9 12.6 108 16-134 11-118 (118)
37 2l0w_A Potassium voltage-gated 99.5 1.4E-12 4.8E-17 96.9 14.8 116 17-136 18-138 (138)
38 3mjq_A Uncharacterized protein 99.5 1.6E-13 5.6E-18 100.8 9.1 116 21-143 2-117 (126)
39 4dj2_A Period circadian protei 99.5 6.9E-13 2.3E-17 113.3 12.9 74 254-330 179-254 (320)
40 1byw_A Protein (human ERG pota 99.5 3.7E-12 1.3E-16 90.3 14.9 107 29-136 2-110 (110)
41 3eeh_A Putative light and redo 99.5 4.4E-13 1.5E-17 97.8 10.2 116 15-134 8-125 (125)
42 4eho_A Bacteriophytochrome, PA 99.4 7.2E-14 2.5E-18 131.3 7.0 116 19-139 519-634 (635)
43 4dj3_A Period circadian protei 99.4 4E-12 1.4E-16 108.4 16.9 72 254-328 177-251 (317)
44 2gj3_A Nitrogen fixation regul 99.4 3.9E-13 1.3E-17 98.5 9.0 91 242-335 6-99 (120)
45 1v9y_A Heme PAS sensor protein 99.4 1E-12 3.5E-17 101.6 11.0 123 15-143 37-163 (167)
46 3gdi_A Period circadian protei 99.4 1.6E-12 5.6E-17 110.5 12.3 71 254-327 168-240 (309)
47 3d72_A Vivid PAS protein VVD; 99.4 4.1E-12 1.4E-16 96.5 13.2 106 22-132 30-149 (149)
48 3mfx_A Sensory BOX/ggdef famil 99.4 3.3E-12 1.1E-16 94.8 11.1 112 17-135 6-124 (129)
49 3vol_A Aerotaxis transducer AE 99.4 7.7E-12 2.6E-16 102.9 12.5 110 16-139 20-141 (233)
50 2vlg_A Sporulation kinase A; h 99.3 1.2E-12 4.2E-17 94.3 5.8 84 246-335 4-90 (111)
51 2pr5_A Blue-light photorecepto 99.3 2.4E-12 8.2E-17 95.9 7.3 91 245-335 3-96 (132)
52 3f1p_B ARYL hydrocarbon recept 99.3 2.6E-12 8.8E-17 94.1 7.3 88 244-334 5-96 (121)
53 3fc7_A HTR-like protein, senso 99.3 1.8E-12 6.1E-17 95.2 6.3 108 16-134 17-125 (125)
54 2r78_A Sensor protein; sensory 99.3 6E-12 2.1E-16 91.7 7.5 92 240-335 10-104 (117)
55 4f3l_A Mclock, circadian locom 99.3 4.6E-12 1.6E-16 111.1 8.1 108 28-139 251-359 (361)
56 1d06_A Nitrogen fixation regul 99.3 5.5E-12 1.9E-16 93.6 7.3 90 243-335 18-114 (130)
57 2vlg_A Sporulation kinase A; h 99.3 1.1E-11 3.7E-16 89.3 8.4 90 22-117 3-92 (111)
58 2qkp_A Uncharacterized protein 99.3 4.7E-11 1.6E-15 90.9 12.3 117 17-140 18-137 (151)
59 3fg8_A Uncharacterized protein 99.3 1.2E-11 4.1E-16 90.2 8.2 106 19-136 13-118 (118)
60 4f3l_B BMAL1B; BHLH, PAS, circ 99.3 1E-11 3.6E-16 109.7 9.2 108 28-138 278-386 (387)
61 4hi4_A Aerotaxis transducer AE 99.3 9.7E-11 3.3E-15 85.8 12.9 106 17-136 4-121 (121)
62 4hia_A LOV protein; PAS, HTH, 99.3 1.1E-11 3.7E-16 97.1 7.7 93 243-335 9-104 (176)
63 3mfx_A Sensory BOX/ggdef famil 99.2 5.9E-12 2E-16 93.4 5.0 90 243-335 9-108 (129)
64 3f1p_A Endothelial PAS domain- 99.2 8.8E-12 3E-16 90.6 5.6 83 250-335 8-93 (117)
65 3p7n_A Sensor histidine kinase 99.2 3.7E-11 1.3E-15 100.4 9.1 94 243-336 65-161 (258)
66 2kdk_A ARYL hydrocarbon recept 99.2 3.4E-11 1.2E-15 87.8 7.3 87 246-335 8-98 (121)
67 4eet_B Phototropin-2; LOV, blu 99.2 6.4E-11 2.2E-15 85.0 7.8 90 246-335 2-94 (115)
68 3b33_A Sensor protein; structu 99.2 3.2E-10 1.1E-14 81.8 10.9 106 20-134 9-115 (115)
69 3bwl_A Sensor protein; structu 99.1 1.6E-10 5.4E-15 84.9 8.3 87 243-334 19-109 (126)
70 3ue6_A Aureochrome1; PAS/LOV d 99.1 1.3E-10 4.3E-15 89.7 7.9 95 241-335 35-132 (166)
71 2vv6_A FIXL, sensor protein FI 99.1 7.7E-11 2.6E-15 85.8 6.2 83 250-335 2-91 (119)
72 3t50_A Blue-light-activated hi 99.1 1.6E-10 5.4E-15 85.0 7.3 90 246-335 2-94 (128)
73 3mqq_A Transcriptional regulat 99.1 5.6E-11 1.9E-15 86.7 4.6 89 243-335 5-97 (120)
74 3luq_A Sensor protein; PAS, hi 99.1 3.1E-10 1.1E-14 81.2 7.8 90 242-335 4-96 (114)
75 3cax_A Uncharacterized protein 99.1 1.6E-09 5.5E-14 95.1 12.9 115 16-140 237-351 (369)
76 3a0r_A Sensor protein; four he 99.0 1.4E-10 4.7E-15 101.3 5.2 118 15-143 5-123 (349)
77 2wkq_A NPH1-1, RAS-related C3 99.0 4.4E-10 1.5E-14 97.5 7.7 91 245-335 15-108 (332)
78 3rty_A Period circadian protei 99.0 1.7E-09 5.7E-14 93.2 10.8 108 28-138 154-266 (339)
79 3fg8_A Uncharacterized protein 99.0 2.5E-10 8.6E-15 83.1 4.5 89 243-335 14-104 (118)
80 3mxq_A Sensor protein; PSI2, M 99.0 3E-10 1E-14 86.4 5.0 68 243-314 24-91 (152)
81 3mr0_A Sensory box histidine k 99.0 1.5E-09 5.2E-14 81.7 8.1 85 241-328 9-95 (142)
82 3d72_A Vivid PAS protein VVD; 99.0 8.8E-10 3E-14 83.4 6.6 89 246-335 31-133 (149)
83 3nja_A Probable ggdef family p 99.0 1.1E-09 3.8E-14 79.6 6.6 91 242-335 8-103 (125)
84 1ll8_A PAS kinase; PAS domain, 99.0 7.4E-10 2.5E-14 79.9 5.5 103 26-134 6-113 (114)
85 3olo_A Two-component sensor hi 98.9 8.6E-10 2.9E-14 79.6 5.7 85 243-335 15-102 (118)
86 3a0s_A Sensor protein; PAS-fol 98.9 1.7E-08 5.7E-13 69.2 11.9 95 27-132 1-96 (96)
87 3lyx_A Sensory BOX/ggdef domai 98.9 2.6E-09 8.7E-14 77.1 7.6 91 242-335 8-101 (124)
88 3icy_A Sensor protein; sensory 98.9 5.3E-10 1.8E-14 80.7 3.8 92 241-335 4-100 (118)
89 1nwz_A PYP, photoactive yellow 98.9 3E-08 1E-12 71.6 12.7 99 21-126 20-120 (125)
90 3fc7_A HTR-like protein, senso 98.9 8.8E-10 3E-14 80.5 4.8 86 243-335 21-108 (125)
91 2z6d_A Phototropin-2; PAS-fold 98.9 3.2E-09 1.1E-13 77.1 7.9 91 242-335 7-103 (130)
92 1ll8_A PAS kinase; PAS domain, 98.9 2.5E-09 8.6E-14 77.0 6.4 83 250-335 7-97 (114)
93 1mzu_A PPR; photoactive yellow 98.9 4.1E-08 1.4E-12 71.0 12.5 98 22-126 26-125 (129)
94 2jhe_A Transcription regulator 98.9 3.8E-09 1.3E-13 83.7 7.8 108 15-138 77-190 (190)
95 2w0n_A Sensor protein DCUS; si 98.9 9.4E-10 3.2E-14 79.3 3.6 104 15-134 12-118 (118)
96 2v0u_A NPH1-1, LOV2; kinase, t 98.9 3.3E-09 1.1E-13 79.0 6.7 90 243-335 4-99 (146)
97 4dj3_A Period circadian protei 98.9 2E-08 6.9E-13 85.6 12.2 107 29-138 175-284 (317)
98 3mjq_A Uncharacterized protein 98.8 1.8E-09 6.2E-14 78.7 4.3 86 245-333 3-90 (126)
99 3sw1_A Sensory box protein; li 98.8 3.7E-09 1.3E-13 81.0 6.0 90 243-335 27-122 (162)
100 3k3c_A Protein RV1364C/MT1410; 98.8 2.5E-09 8.7E-14 81.8 5.0 89 242-335 18-115 (158)
101 1byw_A Protein (human ERG pota 98.8 7.9E-09 2.7E-13 72.7 7.2 84 252-335 2-90 (110)
102 1nwz_A PYP, photoactive yellow 98.8 4.1E-09 1.4E-13 76.2 5.5 67 244-313 20-87 (125)
103 1mzu_A PPR; photoactive yellow 98.8 5.2E-09 1.8E-13 75.7 5.3 65 246-313 27-92 (129)
104 3h9w_A Diguanylate cyclase wit 98.8 3.4E-09 1.2E-13 76.4 4.0 84 250-335 2-89 (115)
105 3gdi_A Period circadian protei 98.8 5.4E-08 1.8E-12 82.7 11.6 107 29-138 166-274 (309)
106 2l0w_A Potassium voltage-gated 98.8 1.6E-08 5.6E-13 74.4 7.6 93 243-335 21-118 (138)
107 3kx0_X Uncharacterized protein 98.8 6.2E-09 2.1E-13 82.1 5.2 88 243-335 39-135 (185)
108 4dj2_A Period circadian protei 98.7 4.8E-08 1.6E-12 83.4 9.5 108 28-138 176-285 (320)
109 3b33_A Sensor protein; structu 98.7 1.2E-08 4.1E-13 73.4 4.8 88 243-335 9-99 (115)
110 3eeh_A Putative light and redo 98.7 1.4E-08 4.8E-13 73.3 5.0 92 241-335 11-107 (125)
111 1v9y_A Heme PAS sensor protein 98.7 4.2E-08 1.4E-12 75.2 7.6 90 243-335 42-138 (167)
112 4hi4_A Aerotaxis transducer AE 98.7 4.9E-08 1.7E-12 71.1 7.5 50 242-294 6-67 (121)
113 3a0s_A Sensor protein; PAS-fol 98.7 4.3E-08 1.5E-12 67.0 6.2 78 251-335 2-79 (96)
114 3vol_A Aerotaxis transducer AE 98.7 6.8E-08 2.3E-12 79.2 8.3 85 241-335 22-118 (233)
115 2qkp_A Uncharacterized protein 98.5 1.2E-07 3.9E-12 72.1 4.7 90 242-336 20-114 (151)
116 2w0n_A Sensor protein DCUS; si 98.5 8E-08 2.7E-12 68.9 3.5 52 242-296 16-70 (118)
117 4eho_A Bacteriophytochrome, PA 98.5 1.6E-07 5.3E-12 88.4 6.0 90 243-336 520-612 (635)
118 3a0r_A Sensor protein; four he 98.3 2.5E-07 8.7E-12 80.5 3.1 67 243-315 10-76 (349)
119 2ykf_A Pdtas, probable sensor 97.5 1.8E-07 6E-12 79.7 0.0 110 23-143 175-293 (305)
120 2jhe_A Transcription regulator 98.2 4.6E-06 1.6E-10 65.7 7.6 54 241-297 80-133 (190)
121 3cax_A Uncharacterized protein 98.1 3E-06 1E-10 74.2 5.1 90 241-336 239-328 (369)
122 2ykf_A Pdtas, probable sensor 97.1 1.6E-06 5.4E-11 73.8 0.0 46 246-295 175-223 (305)
123 1oj5_A Steroid receptor coacti 97.6 8.2E-05 2.8E-09 53.5 5.6 101 30-134 9-113 (132)
124 1oj5_A Steroid receptor coacti 97.3 0.00013 4.4E-09 52.5 2.7 71 257-331 13-87 (132)
125 2ool_A Sensor protein; bacteri 94.2 0.053 1.8E-06 46.2 5.1 38 263-300 52-89 (337)
126 4ew7_A Conjugative transfer: r 91.5 0.45 1.5E-05 32.0 5.3 36 243-283 22-57 (127)
127 2ool_A Sensor protein; bacteri 86.1 0.76 2.6E-05 39.1 4.5 39 32-72 46-84 (337)
128 4dah_A Sporulation kinase D; a 82.6 15 0.00051 28.4 12.6 96 17-138 57-154 (217)
129 3s7o_A Bacteriophytochrome; bi 78.8 3.2 0.00011 35.2 5.5 40 254-295 55-94 (343)
130 4e04_A Bacteriophytochrome (li 73.3 3 0.0001 35.2 3.8 40 254-296 32-71 (327)
131 4ew7_A Conjugative transfer: r 70.8 21 0.00073 24.0 10.3 34 19-55 21-54 (127)
132 4e04_A Bacteriophytochrome (li 64.5 35 0.0012 28.7 8.6 53 30-89 31-83 (327)
133 3nhq_A Bacteriophytochrome; ph 54.3 13 0.00045 33.5 4.5 37 254-295 29-66 (505)
134 3lif_A Putative diguanylate cy 53.2 80 0.0028 24.8 11.8 95 16-136 56-154 (254)
135 3zq5_A Phytochrome-like protei 49.9 5 0.00017 36.3 1.1 41 254-296 32-72 (520)
136 2hje_A Autoinducer 2 sensor ki 42.7 1.2E+02 0.0041 23.7 9.4 86 24-134 58-143 (221)
137 3s7o_A Bacteriophytochrome; bi 40.6 14 0.00048 31.3 2.3 40 31-72 55-94 (343)
138 3pxp_A Helix-turn-helix domain 40.0 42 0.0015 27.7 5.1 35 241-278 99-133 (292)
139 3c38_A Autoinducer 2 sensor ki 33.3 1.9E+02 0.0066 23.4 8.6 87 24-135 77-163 (270)
140 3e4o_A C4-dicarboxylate transp 25.8 2.8E+02 0.0095 22.8 14.2 86 28-138 113-198 (305)
141 3zq5_A Phytochrome-like protei 24.7 26 0.00088 31.7 1.4 40 31-72 32-71 (520)
No 1
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=99.97 E-value=1.4e-29 Score=209.29 Aligned_cols=201 Identities=19% Similarity=0.331 Sum_probs=172.9
Q ss_pred EEEEcCCCCCccEEEecHHHHHhcCCChhhhcCCCCCcccCCCCCHHHHHHHHHHHHcCCCcEEEEEEEcCCCCeEEEEE
Q 019399 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLF 110 (341)
Q Consensus 31 i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~~~~~~~ 110 (341)
++++|.+ |+++++|++|++++||++++++|++...+.++.........+.+.+..+..+..+....++||..+|+.+
T Consensus 2 i~i~D~~---g~i~~~N~a~~~l~Gy~~~el~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~ 78 (227)
T 3ewk_A 2 VSITDLQ---GRILYANDNFCAVSRYGREELVGQDHRIVNSGYHGKAYIRDMWRTISRGNIWQGEFCNRRKDGTRYWVDS 78 (227)
T ss_dssp EEEEETT---CBEEEECHHHHHHTTCCHHHHTTSBGGGGCCSCSCHHHHHHHHHHHTTTCCEEEEEEEECSSSCEEEEEE
T ss_pred EEEECCC---CcEEehHHHHHHHHCcCHHHHcCCCHHHcCCCCCCHHHHHHHHHHHHcCCeEEEEEEEEcCCCCEEeeee
Confidence 6789999 9999999999999999999999999877776666666677777888888889999999999999999999
Q ss_pred EEEEeecCCCCcEEEEEEEEecCchhhhcccccccccccCCCCcchhhhhhhhhhhhccchhhhhhhhhccccCCcCccc
Q 019399 111 KMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLEI 190 (341)
Q Consensus 111 ~~~~~~~~~~g~~~~~~~~~~Dite~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 190 (341)
...|+.+ .+|.+.+++++.+|||++|++++++
T Consensus 79 ~~~p~~d-~~g~~~~~~~~~~DIT~~k~~e~~l----------------------------------------------- 110 (227)
T 3ewk_A 79 TIVPLMD-NAGKPRQYISIRRDITAQKEAEAQL----------------------------------------------- 110 (227)
T ss_dssp EEEEEEC-SSSCEEEEEEEEEECTTTTHHHHHH-----------------------------------------------
T ss_pred EEEEEEc-CCCCEEEEEEEEEehhhHHHHHHHH-----------------------------------------------
Confidence 9999999 8999999999999999999973221
Q ss_pred cchhhhhhHHHHHHHhhhhchhheeecccccCCceEeeeecCCCCccchhchHHHHhhccCCceEEeCCCCCCCCEEEec
Q 019399 191 EDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYAS 270 (341)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~d~~i~~~N 270 (341)
+. +..++++++++|+++|.+ |+|+++|
T Consensus 111 -----------~~---------------------------------------~~~~~~~~~~~i~~~d~~---g~i~~~N 137 (227)
T 3ewk_A 111 -----------AR---------------------------------------LKQAMDANSEMILLTDRA---GRIIYAN 137 (227)
T ss_dssp -----------HH---------------------------------------HHHHHHTCCSEEEEECTT---SCEEEEC
T ss_pred -----------HH---------------------------------------HHHHHhcCcCeEEEEcCC---CcEEEEc
Confidence 00 445778889999999998 9999999
Q ss_pred HHHHHHhCCCcccccCCccccccCCCChHHHHHHhhhhhccCcchhhhh---ccccc------ceeEEEEEecc
Q 019399 271 DAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHSNRASMH---RRIKA------HFGIFFTYHPS 335 (341)
Q Consensus 271 ~~~~~~~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---r~~~~------~~~~~~~~~p~ 335 (341)
++|++++||+++|++|+++..+.+|.+.......+++++..+..+..++ +++|. ..|+.++.+|.
T Consensus 138 ~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~k~G~~~~dg~~~~~~~~~~pi 211 (227)
T 3ewk_A 138 PALCRFSGMAEGELLGQSPSILDSPLADQETLAAMQEALQAGQPWSGRLLNRRRTGPAPHDAEDYWAEISTTPI 211 (227)
T ss_dssp HHHHHHHTCCTHHHHSSCGGGGBCTTSCHHHHHHHHHHHHHTCCEECCEEEEEECCSSSSCEEEEEEEEEEEEE
T ss_pred hHHHHHhCCCHHHHcCCChhhccCCCCCHHHHHHHHHHHHcCCceeEEEEEECCCCCcCcccceEEEEEEEEEE
Confidence 9999999999999999999999999999999999999999888876644 44443 45666667665
No 2
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=99.80 E-value=2.6e-18 Score=126.55 Aligned_cols=118 Identities=19% Similarity=0.374 Sum_probs=105.0
Q ss_pred hHHHHHHHHhhCCCeEEEEcCCCCCccEEEecHHHHHhcCCChhhhcCCCCCcccCCCCCHHHHHHHHHHHHcCCCcEEE
Q 019399 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVN 95 (341)
Q Consensus 16 ~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e 95 (341)
..++++.++++++++++++|.+ |+++++|++|++++||++++++|++...+.++.........+...+..+..+..+
T Consensus 3 ~~~~~~~~~~~~~~~i~~~d~~---g~i~~~N~a~~~~~G~~~~elig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e 79 (120)
T 2gj3_A 3 LPEIFRQTVEHAPIAISITDLK---ANILYANRAFRTITGYGSEEVLGKNESILSNGTTPRLVYQALWGRLAQKKPWSGV 79 (120)
T ss_dssp CHHHHHHHHHHCSSEEEEECTT---CBEEEECHHHHHHHCCCTTGGGGCBGGGGCCTTSCHHHHHHHHHHHHTTCCEEEE
T ss_pred hHHHHHHHHHhCCCeEEEECCC---CCEEeehHHHHHHHCcCHHHHcCCCHHHcCCCCCCHHHHHHHHHHHHcCCCEEEE
Confidence 3467889999999999999999 9999999999999999999999998777776666555566677777888888889
Q ss_pred EEEEcCCCCeEEEEEEEEEeecCCCCcEEEEEEEEecCchhh
Q 019399 96 LLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137 (341)
Q Consensus 96 ~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~Dite~k 137 (341)
+...+++|..+|+.++..|+.+ .+|.+.+++++++|||++|
T Consensus 80 ~~~~~~dG~~~~~~~~~~pi~~-~~g~~~~~v~~~~DITe~k 120 (120)
T 2gj3_A 80 LVNRRKDKTLYLAELTVAPVLN-EAGETIYYLGMHRDTSELH 120 (120)
T ss_dssp EEEECTTSCEEEEEEEEEEEEC-TTSCEEEEEEEEEECCSCC
T ss_pred EEEEcCCCCEEEEEEEEEEEEC-CCCCEEEEEEEeccCcccC
Confidence 9999999999999999999998 8999999999999999875
No 3
>4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A*
Probab=99.74 E-value=3.8e-17 Score=128.63 Aligned_cols=126 Identities=25% Similarity=0.409 Sum_probs=113.0
Q ss_pred hHHHHHHHHhhCCCeEEEEcCCCCCccEEEecHHHHHhcCCChhhhcCCCCCcccCCCCCHHHHHHHHHHHHcCCCcEEE
Q 019399 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVN 95 (341)
Q Consensus 16 ~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e 95 (341)
..++++.++++++++++++|.+.++|.++++|+++++++||++++++|+++..+.++.........+...+..+..+..+
T Consensus 5 ~~~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 84 (176)
T 4hia_A 5 QFEKIRAVFDRSGVALTLVDMSLPEQPVVLANPPFLRMTGYTEGQILGFNCRFLQRGDENAQARADIRDALKLGRELQVV 84 (176)
T ss_dssp HHHHHHHHHHHCSSCCEEEETTSTTCCEEEECHHHHHHHTCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHhcCCCcEEEEecCCCCCcEEEECHHHHHHHCcCHHHHcCCCcceeeCCCCCHHHHHHHHHHHHcCCceEEE
Confidence 45678899999999999999875568999999999999999999999999888888877777777888888888888889
Q ss_pred EEEEcCCCCeEEEEEEEEEeecCCCCcEEEEEEEEecCchhhhcccc
Q 019399 96 LLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142 (341)
Q Consensus 96 ~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~Dite~k~~~~~ 142 (341)
....+++|..+|+.++..|+.+ .+|.+.+++++++|||++|+++++
T Consensus 85 ~~~~~~dG~~~~~~~~~~pi~~-~~g~~~~~~~~~~DITe~k~~e~~ 130 (176)
T 4hia_A 85 LRNYRANDEPFDNLLFLHPVGG-RPDAPDYFLGSQFELGRSGNSEEA 130 (176)
T ss_dssp EEEECTTCCEEEEEEEEEEESS-BTTBCSEEEEEEEEESSSGGGHHH
T ss_pred EEEEcCCCCEEEEEEEEEEeeC-CCCCeEEEEEEEEECcHhhHHHHH
Confidence 9999999999999999999998 799999999999999999998544
No 4
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=99.73 E-value=6.1e-17 Score=121.22 Aligned_cols=119 Identities=36% Similarity=0.654 Sum_probs=98.3
Q ss_pred HHHhhCCCeEEEEcCCCCCccEEEecHHHHHhcCCChhhhcCCCCCcccCCCCCHHHHHHHHHHHHcCCCcEEEEEEEcC
Q 019399 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKK 101 (341)
Q Consensus 22 ~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 101 (341)
.++++++++++++|.+.++|+++++|+++++++||++++++|+++..+.++.........+...+..+..+..+....++
T Consensus 3 ~~~~~~~~~i~~~d~~g~~~~i~~~N~a~~~~~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~k 82 (132)
T 2pr5_A 3 HMLDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEVDNIRTALQNKEPVTVQIQNYKK 82 (132)
T ss_dssp ---CCCCCEEEEECTTSTTCCEEEECHHHHHHHSCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECT
T ss_pred hHHhcCCCcEEEEeCCCCCCcEEEECHHHHHHhCcCHHHHcCCChhhhCCCCCCHHHHHHHHHHHHcCCCeEEEEEEEec
Confidence 57899999999999971123999999999999999999999998877766666655566677777788888888899999
Q ss_pred CCCeEEEEEEEEEeecCCCCcEEEEEEEEecCchhhhccccc
Q 019399 102 DGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (341)
Q Consensus 102 dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~Dite~k~~~~~~ 143 (341)
||..+|+.+...|+.+ .+ +.+++++++|||++|++|+++
T Consensus 83 dG~~~~~~~~~~~~~~-~~--~~~~~~~~~DITe~k~~e~~l 121 (132)
T 2pr5_A 83 DGTMFWNELNIDPMEI-ED--KTYFVGIQNDITKQKEYEKLL 121 (132)
T ss_dssp TSCEEEEEEEEEEEEE-TT--EEEEEEEEEECHHHHHHHHHH
T ss_pred CCCeeeeEEEEEeccC-CC--eeEEEEEEEeCcHHHHHHHHH
Confidence 9999999999999987 43 788999999999999985443
No 5
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=99.73 E-value=2.3e-17 Score=121.48 Aligned_cols=115 Identities=10% Similarity=0.128 Sum_probs=97.7
Q ss_pred HHHHHhhCCCeEEEEcCCCCCccEEEecHHHHHhcCCChhhhcCCCCCcccCCCCCHHHHHHHHHHHH-cCCCcEEEEEE
Q 019399 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIR-EERPIEVNLLN 98 (341)
Q Consensus 20 ~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~ 98 (341)
...+++++++.++++|.+ |+++++|+++++++||++++++|+++..+.+|++.......+...+. .+..+..++++
T Consensus 4 ~~ll~e~~~d~i~~~d~~---g~i~~~n~~~~~~~G~~~~el~g~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~~~e~r~ 80 (121)
T 3f1p_B 4 KGLNVCQPTRFISRHNIE---GIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRF 80 (121)
T ss_dssp ----CCCCCEEEEEECTT---SBEEEECTTHHHHHSCCGGGTTTSBGGGGBCTTTHHHHHHHHHHHTTSTTCCEEEEEEE
T ss_pred ccceecCCCceEEEECCC---ceEEEECcchhhhhCCChHHHcCCCHHHeECHHHHHHHHHHHHHHHhcCCCcccEEEEE
Confidence 456789999999999999 99999999999999999999999998888888887766666766664 44567889999
Q ss_pred EcCCCCeEEEEEEEEEeecCC-CCcEEEEEEEEecCchhhh
Q 019399 99 YKKDGTPFWMLFKMSLVFGKE-DGRATHFVAVQVPIVSRKH 138 (341)
Q Consensus 99 ~~~dg~~~~~~~~~~~~~~~~-~g~~~~~~~~~~Dite~k~ 138 (341)
++++|..+|+.+...|+.+ . +|.+.+++++.+|||++|+
T Consensus 81 ~~~dG~~~w~~~~~~~~~~-~~~g~~~~iv~~~~DIT~~kq 120 (121)
T 3f1p_B 81 RSKNQEWLWMRTSSFTFQN-PYSDEIEYIICTNTNVKNSSQ 120 (121)
T ss_dssp ECTTSCEEEEEEEEEEECC-TTCCCCCEEEEEEEECCCC--
T ss_pred EecCCCEEEEEEEEEEEEC-CCCCceeEEEEEeEEcccccC
Confidence 9999999999999999987 5 7888999999999999987
No 6
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.73 E-value=6.8e-17 Score=141.85 Aligned_cols=75 Identities=11% Similarity=-0.011 Sum_probs=63.0
Q ss_pred ceEEeCCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCChHHHHHHhhhhhccCcchhhhhcccccceeEEE
Q 019399 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHSNRASMHRRIKAHFGIFF 330 (341)
Q Consensus 253 ~i~i~d~~~~d~~i~~~N~~~~~~~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 330 (341)
.+...+.+ |+++|+|++++.++||+++|++|+++..++||++.+.....++..+..+.....+||...++|...|
T Consensus 253 f~~~~~~d---g~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~~~l~~g~~~~~eyR~~~kdG~~vW 327 (361)
T 4f3l_A 253 FTSRHSLE---WKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHVDDLENLAKCHEHLMQYGKGKSCYYRFLTKGQQWIW 327 (361)
T ss_dssp EEEEECTT---SBEEEECTTSHHHHCCCHHHHTTSBGGGGBCHHHHHHHHHHHHHHHHHSEEECCCEEEECTTSEEEE
T ss_pred eEEEEcCC---ceEEEECChhhhhhCcCHHHHcCCCHHHeECHHHHHHHHHHHHHHHhCCCcceEEEEEEecCCCEEE
Confidence 45556666 9999999999999999999999999999999999998888888888887776667776666654433
No 7
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=99.72 E-value=2.1e-16 Score=114.21 Aligned_cols=108 Identities=41% Similarity=0.805 Sum_probs=95.4
Q ss_pred CCCeEEEEcCCCCCccEEEecHHHHHhcCCChhhhcCCCCCcccCCCCCHHHHHHHHHHHHcCCCcEEEEEEEcCCCCeE
Q 019399 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPF 106 (341)
Q Consensus 27 ~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~~~ 106 (341)
++++++++|....+|+++++|++|++++||++++++|++...+.++.........+.+.+..+..+..++...++||+.+
T Consensus 2 ~~~~i~i~d~~~~~g~i~~~N~a~~~l~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~ 81 (109)
T 1n9l_A 2 LRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEGTDPKEVQKIRDAIKKGEACSVRLLNYRKDGTPF 81 (109)
T ss_dssp CSCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEE
T ss_pred CccEEEEEcCCCCCCeEEEEchHHHHHHCcCHHHHcCCCchhcCCCCCCHHHHHHHHHHHHcCCcEEEEEEEEcCCCCEE
Confidence 57899999953223999999999999999999999999977777776666667778888888899999999999999999
Q ss_pred EEEEEEEEeecCCCCcEEEEEEEEecCch
Q 019399 107 WMLFKMSLVFGKEDGRATHFVAVQVPIVS 135 (341)
Q Consensus 107 ~~~~~~~~~~~~~~g~~~~~~~~~~Dite 135 (341)
|+.+++.|+++ ++|.+.+++++.+|||+
T Consensus 82 ~~~~~~~pi~d-~~G~~~~~v~~~~DITe 109 (109)
T 1n9l_A 82 WNLLTVTPIKT-PDGRVSKFVGVQVDVTS 109 (109)
T ss_dssp EEEEEEEEEEC-TTSCEEEEEEEEEECCC
T ss_pred EEEEEEEEEEC-CCCCEEEEEEEEEeCCC
Confidence 99999999999 89999999999999995
No 8
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=99.72 E-value=1.3e-16 Score=121.12 Aligned_cols=125 Identities=14% Similarity=0.205 Sum_probs=106.6
Q ss_pred hhHHHHHHHHhhCCCeEEEEcCCCCCccEEEecHHHHHhcCCChhhhcCC--CCCcccCCCCCHHHHHHHHHHHHcCCCc
Q 019399 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGR--NGRMFQGPRTNRRTIMEIREAIREERPI 92 (341)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (341)
.++++++.+++.++.++|.+|.. +..+++|+++.+++||+++++.+. .+..+++|++.......+...+..+..+
T Consensus 6 ~se~rl~~~~~~~~~g~w~~d~~---~~~~~~s~~~~~~~G~~~~~~~~~~~~~~~~ihpdD~~~~~~~~~~~~~~~~~~ 82 (142)
T 3mr0_A 6 ASEERFQLAVSGASAGLWDWNPK---TGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDTY 82 (142)
T ss_dssp ---CCHHHHHHHTTCEEEEECTT---TCCEEECHHHHHHTTCCGGGSCSEEC---CCBCTTTHHHHHHHHHHHHHHCCCE
T ss_pred HHHHHHHHHHHhCCcEEEEEEcC---CCeEEECHHHHHHhCCCccccCCCHHHHHhhcCHHHHHHHHHHHHHHHhCCCce
Confidence 44567888999999999999999 899999999999999999887663 3456778888777777888888888888
Q ss_pred EEEEEEEcCCCCeEEEEEEEEEeecCCCCcEEEEEEEEecCchhhhccccc
Q 019399 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (341)
Q Consensus 93 ~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~Dite~k~~~~~~ 143 (341)
..++++.+++|..+|+.....|+.+ .+|.+.+++|++.|||++|++|+++
T Consensus 83 ~~e~r~~~~~G~~~w~~~~~~~~~d-~~g~~~~~~G~~~DITerk~~E~~L 132 (142)
T 3mr0_A 83 DVEYRVRTRSGDFRWIQSRGQALWN-SAGEPYRMVGWIMDVTDRKRDEDAL 132 (142)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEEC-TTSCEEEEEEEEEECHHHHHHHHHH
T ss_pred EEEEEEECCCCCEEEEEEEEEEEEC-CCCCEEEEEEEEEcCchHHHHHHHH
Confidence 9999999999999999999999998 8999999999999999999985443
No 9
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A*
Probab=99.71 E-value=2e-16 Score=122.98 Aligned_cols=121 Identities=39% Similarity=0.650 Sum_probs=109.5
Q ss_pred hhHHHHHHHHhhCCCeEEEEcC---CCCCccEEEecHHHHHhcCCChhhhcCCCCCcccCCCCCHHHHHHHHHHHHcCCC
Q 019399 15 RYTLWVHEALDELPDSFTITDP---SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP 91 (341)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d~---~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 91 (341)
.....+..++++++++++++|. + |.++++|+++++++||++++++|+++..+.++.........+...+..+..
T Consensus 32 ~~~~~~~~~~~~~~~~i~~~d~~~~~---g~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 108 (166)
T 3ue6_A 32 DPDYSLVKALQMAQQNFVITDASLPD---NPIVYASRGFLTLTGYSLDQILGRNCRFLQGPETDPRAVDKIRNAITKGVD 108 (166)
T ss_dssp CCCCHHHHHHHHTTSCEEEEETTSTT---CCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhcCCceEEEEEccCCC---CcEEEECHHHHHHhCcCHHHHcCCCHhheeCCCCCHHHHHHHHHHHhcCCc
Confidence 3456788999999999999999 7 999999999999999999999999988787777777777778888888888
Q ss_pred cEEEEEEEcCCCCeEEEEEEEEEeecCCCCcEEEEEEEEecCchhhhc
Q 019399 92 IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (341)
Q Consensus 92 ~~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~Dite~k~~ 139 (341)
+..+.....++|..+|+.+...|+.+ .+|.+.+++++++|||++|++
T Consensus 109 ~~~e~~~~~~~g~~~~~~~~~~~i~~-~~g~~~~~~~~~~DITe~k~~ 155 (166)
T 3ue6_A 109 TSVCLLNYRQDGTTFWNLFFVAGLRD-SKGNIVNYVGVQSKVSEDYAK 155 (166)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEEEEC-TTSCEEEEEEECCBCCHHHHH
T ss_pred eEEEEEEEcCCCCEEEEEEEEEeeeC-CCCCEEEEEEEEEechHHHHH
Confidence 88899999999999999999999998 899999999999999999986
No 10
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}
Probab=99.70 E-value=3.5e-16 Score=115.99 Aligned_cols=117 Identities=38% Similarity=0.664 Sum_probs=102.2
Q ss_pred HHhhCCCeEEEEcC---CCCCccEEEecHHHHHhcCCChhhhcCCCCCcccCCCCCHHHHHHHHHHHHcCCCcEEEEEEE
Q 019399 23 ALDELPDSFTITDP---SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNY 99 (341)
Q Consensus 23 ~~~~~~~~i~~~d~---~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 99 (341)
++++++++++++|. + |.++++|+++++++|+++++++|+++..+.++.........+...+..+..+..+....
T Consensus 2 ~~~~~~~~i~~~d~~~~~---g~i~~~N~~~~~l~g~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 78 (128)
T 3t50_A 2 ASEFTLMPMLITNPHLPD---NPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPIDIDIINY 78 (128)
T ss_dssp CCCCCSSCEEEECTTSTT---CCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred ccccCcccEEEecCCCCC---CcEEEEcHHHHHHhCcCHHHHcCCCHhhhcCCccCHHHHHHHHHHHHcCCCceeEEEEE
Confidence 46789999999999 7 89999999999999999999999998877777777777777888888888888899999
Q ss_pred cCCCCeEEEEEEEEEeecCCCCcEEEEEEEEecCchhhhccccc
Q 019399 100 KKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (341)
Q Consensus 100 ~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~Dite~k~~~~~~ 143 (341)
.++|..+|+.+...|+.+ .+|.+.+++++++|||++|+++++.
T Consensus 79 ~~~g~~~~~~~~~~~i~~-~~g~~~~~~~~~~DITe~k~~e~~~ 121 (128)
T 3t50_A 79 KKSGEAFWNRLHISPVHN-ANGRLQHFVSSQLDVTLELVPRGSL 121 (128)
T ss_dssp CTTCCEEEEEEEEEEEEC-TTSCEEEEEEEEEECHHHHC-----
T ss_pred cCCCCEEEEEEEEEEEEC-CCCCEEEEEEEEEEcchhhhhhhhh
Confidence 999999999999999998 8999999999999999999985443
No 11
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=99.68 E-value=1.3e-16 Score=116.59 Aligned_cols=108 Identities=8% Similarity=0.170 Sum_probs=96.9
Q ss_pred CCCeEEEEcCCCCCccEEEecHHHHHhcCCChhhhcCCCCCcccCCCCCHHHHHHHHHHHHcCCCcEEEEEEEcCCCCeE
Q 019399 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPF 106 (341)
Q Consensus 27 ~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~~~ 106 (341)
+++.+++.|.+ |+++++|+++++++||++++++|+++..+.+|++.......+...+..+..+..++++.+++|..+
T Consensus 8 ~~~~i~~~d~~---g~i~~~n~~~~~~~Gy~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~~ 84 (117)
T 3f1p_A 8 SKTFLSEHSMD---MKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLAKHGGYV 84 (117)
T ss_dssp GGEEEEEECTT---CBEEEECTHHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHSEEECCCEEEECTTSSEE
T ss_pred CccEEEEECCC---ceEEEECcChhhhhCCCHHHHcCCchhheECHHHHHHHHHHHHHHHhCCCeeeeEEEEEecCCCEE
Confidence 45788999999 999999999999999999999999988888888877777777777777777778899999999999
Q ss_pred EEEEEEEEeecCC-CCcEEEEEEEEecCchhhh
Q 019399 107 WMLFKMSLVFGKE-DGRATHFVAVQVPIVSRKH 138 (341)
Q Consensus 107 ~~~~~~~~~~~~~-~g~~~~~~~~~~Dite~k~ 138 (341)
|+.+...|+.+ + +|.+.+++++.+|||++|+
T Consensus 85 w~~~~~~~~~d-~~~g~~~~iv~~~~DITer~~ 116 (117)
T 3f1p_A 85 WLETQGTVIYN-PRNLQPQCIMCVNYVLSEIEK 116 (117)
T ss_dssp EEEEEEEEEEE-TTTTEEEEEEEEEEECSCCBC
T ss_pred EEEEeeEEEEC-CCCCCceEEEEEeeecccccc
Confidence 99999999998 6 7889999999999999986
No 12
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=99.68 E-value=7.1e-16 Score=129.33 Aligned_cols=120 Identities=30% Similarity=0.597 Sum_probs=105.8
Q ss_pred hhHHHHHHHHhhCCCeEEEEcC---CCCCccEEEecHHHHHhcCCChhhhcCCCCCcccCCCCCHHHHHHHHHHHHcCCC
Q 019399 15 RYTLWVHEALDELPDSFTITDP---SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP 91 (341)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d~---~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 91 (341)
...++++.++++++++++++|. + |+++++|++|++++||++++++|+++..+.++.........+...+..+..
T Consensus 60 ~~~~~~~~i~~~~~~~i~~~d~~~~~---g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~l~~~~~ 136 (258)
T 3p7n_A 60 PPAQWVLDLIEASPIASVVSDPRLAD---NPLIAINQAFTDLTGYSEEECVGRNCRFLAGSGTEPWLTDKIRQGVREHKP 136 (258)
T ss_dssp -CCHHHHHHHHTCSSEEEEECTTSTT---CCEEEECHHHHHHHCCCGGGTTTSCGGGGCCTTCCHHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHhcCCccEEEEcCCCCC---CcEEEEhHHHHHHcCCCHHHHCCCChhhccCCCCchhHHHHHHHHHHcCCC
Confidence 4456789999999999999999 7 889999999999999999999999988888888887777788888888889
Q ss_pred cEEEEEEEcCCCCeEEEEEEEEEeecCCCCcEEEEEEEEecCchhhh
Q 019399 92 IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (341)
Q Consensus 92 ~~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~Dite~k~ 138 (341)
+..+.+..++||..+|+.+...|+.+ ++|.+.+++++++|||++|.
T Consensus 137 ~~~e~~~~~~dG~~~~~~~~~~pi~d-~~g~~~~~v~~~~DITerk~ 182 (258)
T 3p7n_A 137 VLVEILNYKKDGTPFRNAVLVAPIYD-DDDELLYFLGSQVEVDDDQP 182 (258)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEEEEC-TTSCSEEEEEEEEEC-----
T ss_pred eEEEEEEEcCCCCEEEEeeEEEEEEc-CCCCEEEEEEEeeecchhhh
Confidence 99999999999999999999999998 89999999999999999954
No 13
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Probab=99.67 E-value=2.1e-15 Score=109.03 Aligned_cols=111 Identities=41% Similarity=0.778 Sum_probs=98.5
Q ss_pred HHhhCCCeEEEEcC---CCCCccEEEecHHHHHhcCCChhhhcCCCCCcccCCCCCHHHHHHHHHHHHcCCCcEEEEEEE
Q 019399 23 ALDELPDSFTITDP---SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNY 99 (341)
Q Consensus 23 ~~~~~~~~i~~~d~---~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 99 (341)
.+++++++++++|. + |+++++|+++++++|+++++++|+++..+.++.........+...+..+..+..+.+..
T Consensus 2 ~l~~~~~~i~~~d~~~~~---g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (115)
T 4eet_B 2 SPEFIEKNFVITDPRLPD---NPIIFASDGFLELTEYSREEILGRNARFLQGPETDQATVQKIRDAIRDQRETTVQLINY 78 (115)
T ss_dssp ---CCCCSEEEECTTSTT---CCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred ccccCCCcEEEEcCCCCC---CcEEEEcHHHHHHHCcCHHHHhCCCHHHhcCCCCChHHHHHHHHHHHcCCCcceEEEEe
Confidence 47889999999999 8 99999999999999999999999998777777777777777788888888888898899
Q ss_pred cCCCCeEEEEEEEEEeecCCCCcEEEEEEEEecCchhh
Q 019399 100 KKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137 (341)
Q Consensus 100 ~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~Dite~k 137 (341)
.++|..+|+.+...|+.+ .+|.+.+++++++|||+++
T Consensus 79 ~~~g~~~~~~~~~~~~~~-~~g~~~~~~~~~~DITer~ 115 (115)
T 4eet_B 79 TKSGKKFWNLLHLQPVRD-QKGELQYFIGVQLDGSDHV 115 (115)
T ss_dssp CTTCCEEEEEEEEEEEEC-TTSCEEEEEEEEEECSCCC
T ss_pred cCCCCEEEEEEEEEEEEC-CCCCEEEEEEEEEeecccC
Confidence 999999999999999998 8999999999999999874
No 14
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=99.66 E-value=9.3e-16 Score=112.76 Aligned_cols=120 Identities=14% Similarity=0.090 Sum_probs=91.7
Q ss_pred hhHHHHHHHHhhCCCeEEEEcCCCCCccEEEecHHHHHhcCCChhhhcC--CCCCcccCCCCCHHHHHHHHHHHHcCCCc
Q 019399 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIG--RNGRMFQGPRTNRRTIMEIREAIREERPI 92 (341)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (341)
..+++++.++++++.+++.+|.+ +.++++|+++++++|++++++.| ..+..+.++++.......+...+..+..+
T Consensus 4 ~~~~~l~~~~~~~~~~i~~~d~~---~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 80 (125)
T 3nja_A 4 MAEKLLHTAESDAGIGSWVLHME---SGRLEWSQAVHDIFGTDSATFDATEDAYFQRVHPDDRARVRRELDRHVLGDRPF 80 (125)
T ss_dssp -------------CCEEEEEETT---TTEEEECHHHHHHHTCCTTTCCCBHHHHHHHBCTTTHHHHHHHHHHHHHSCCCE
T ss_pred HHHHHHHHHHHhCCeeEEEEEcC---CCcEEECHHHHHHhCCCcccccccHHHHHhhcChhHHHHHHHHHHHHHhcCCCc
Confidence 34567888999999999999999 99999999999999999999888 33444566776666667777788888888
Q ss_pred EEEEEEEcCCCCeEEEEEEEEEeecCCCCcEEEEEEEEecCchhhh
Q 019399 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (341)
Q Consensus 93 ~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~Dite~k~ 138 (341)
..++++..++|..+|+.+...|+.+ .+|.+.+++++++|||++|+
T Consensus 81 ~~e~~~~~~~g~~~~~~~~~~~~~~-~~g~~~~~~g~~~DITe~k~ 125 (125)
T 3nja_A 81 DVEYRIVRPDGQVRELLERNHIQRQ-ASGQVDHLWGTVIDMTEHKQ 125 (125)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEEC-TTSCEEEEEEEEEECCC---
T ss_pred eEEEEEECCCCCEEEEEEeeEEEEC-CCCCEEEEEEEEEecccccC
Confidence 8899999999999999999999998 89999999999999999875
No 15
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=99.66 E-value=1.4e-15 Score=131.04 Aligned_cols=73 Identities=10% Similarity=-0.039 Sum_probs=59.7
Q ss_pred CceEEeCCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCChHHHHHHhhhhhccCcc-----hhhhhcccccce
Q 019399 252 QSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHSN-----RASMHRRIKAHF 326 (341)
Q Consensus 252 ~~i~i~d~~~~d~~i~~~N~~~~~~~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~r~~~~~~ 326 (341)
..+...+.+ |+++|+|+++..++||+++|++|+++..++||+|.....+.+.+.+..+.. ....||...++|
T Consensus 155 ~fi~r~~~d---G~~~yvn~~~~~lLGY~peELiG~s~~~~vHPdD~~~~~~~~~~~l~~G~~~~~~~~s~~yR~~~kdG 231 (339)
T 3rty_A 155 KFAIRHTAT---GIISHVDSAAVSALGYLPQDLIGRSIMDFYHHEDLSVMKETYETVMKKGQTAGASFCSKPYRFLIQNG 231 (339)
T ss_dssp EEEEEEETT---CBEEEECTTHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHTTSTTCCCBCCCEEEECTTS
T ss_pred eEEEEECCC---CeEEEcChhhhcccCCCHHHHcCCcHHHEECHHHHHHHHHHHHHHHHcCCcccccccceEEEEEccCC
Confidence 456666777 999999999999999999999999999999999999888888888876654 234666655555
Q ss_pred e
Q 019399 327 G 327 (341)
Q Consensus 327 ~ 327 (341)
.
T Consensus 232 ~ 232 (339)
T 3rty_A 232 C 232 (339)
T ss_dssp C
T ss_pred C
Confidence 3
No 16
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=99.65 E-value=5.5e-15 Score=107.77 Aligned_cols=120 Identities=20% Similarity=0.261 Sum_probs=103.6
Q ss_pred hhHHHHHHHHhhCCCeEEEEcCCCCCccEEEecHHHHHhcCCChhhhcCCCCCcccCCCCCHHHHHHHHHHHHcCCCcEE
Q 019399 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94 (341)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (341)
...+.++.++++++++++++|.+ |.++++|+++++++|++.++++|++...+.++.........+...+..+..+..
T Consensus 4 ~~~~~~~~~~~~~~~~i~~~d~~---~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (124)
T 3lyx_A 4 DILKQRAKAFDYVFDAIVVTDLQ---GFIIDWNKGSETLYGYSKEQAIGQPVNMLHVPGDTEHITSEVISAVENQGKWTG 80 (124)
T ss_dssp CHHHHHHHGGGTCSSEEEEEETT---CBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTTHHHHHHHHHHHHHHTSCEEE
T ss_pred hHHHHHHHHHhhcCceEEEECCC---CcEeehhhHHHHHhCCCHHHHcCCCHHHhcCcchhhHHHHHHHHHHHcCCcccc
Confidence 34567889999999999999999 999999999999999999999999877555555555555667777788888888
Q ss_pred EEEEEcCCCCeEEEEEEEEEeecCCCCcEEEEEEEEecCchhhh
Q 019399 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (341)
Q Consensus 95 e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~Dite~k~ 138 (341)
+......+|..+|+.+...|+.+ .+|.+.+++++++|||++|+
T Consensus 81 ~~~~~~~~g~~~~~~~~~~~~~~-~~g~~~~~~~~~~Dit~~~~ 123 (124)
T 3lyx_A 81 EIRMLHKDGHIGWIESMCVPIYG-ENYQMVGALGINRDITKRKK 123 (124)
T ss_dssp EEEEECTTSCEEEEEEEEEEEEC-STTCEEEEEEEEEECSCC--
T ss_pred eEEEEccCCCEEEEEEEEEEEEC-CCCCEEEEEEEEecchhhhc
Confidence 88889999999999999999998 89999999999999999876
No 17
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=99.65 E-value=7.3e-16 Score=113.19 Aligned_cols=115 Identities=12% Similarity=0.093 Sum_probs=90.3
Q ss_pred HHHHHHhhCCCeEEEEcCCCCCccEEEecHHHHHhcCCChhhhcCCCCCcccCCCCC-HHHHHHHHHHHHcCCCcEEEEE
Q 019399 19 WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTN-RRTIMEIREAIREERPIEVNLL 97 (341)
Q Consensus 19 ~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~e~~ 97 (341)
.++.++++++++++ ++.+ |+++++|+++++++||++++++|+++..+.++... ......+...+..+..+..+..
T Consensus 4 ~~~~~~~~~~~~i~-~~~~---g~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 79 (120)
T 3mqq_A 4 DYKTAFHLAPIGLV-LSRD---RVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRI 79 (120)
T ss_dssp CHHHHHHHCSSEEE-EEET---TEEEEECHHHHHHTTSCHHHHTTCBGGGGSSSHHHHHHHHHHHHHHHHHHSCEEEEEE
T ss_pred hHHHHHhcCCceEE-EecC---CEEHHHHHHHHHHhCcCHHHhCCCchhhccCChhhHHHHHHHHHHHHhcCCcceEEEE
Confidence 36789999999996 4778 99999999999999999999999987766544322 2333445556666777888999
Q ss_pred EEcCCCCeEEEEEEEEEeecCCCCcEEEEEEEEecCchhhhc
Q 019399 98 NYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (341)
Q Consensus 98 ~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~Dite~k~~ 139 (341)
..++||..+|+.+...|+. .++...+++++++|||++|++
T Consensus 80 ~~~~dG~~~~~~~~~~~~~--~~~~~~~~v~~~~DITerk~~ 119 (120)
T 3mqq_A 80 MKRAGGELFWCHVTGRALD--RTAPLAAGVWTFEDLSATRRV 119 (120)
T ss_dssp EECTTSCEEEEEEEEEESS--TTSTTSSEEEEEEESCC----
T ss_pred EEeCCCCEEEEEEEEEECC--CCCCceeEEEEEEcccHhhcc
Confidence 9999999999999999994 466667889999999999984
No 18
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=99.64 E-value=1.2e-14 Score=106.83 Aligned_cols=121 Identities=37% Similarity=0.725 Sum_probs=103.3
Q ss_pred hHHHHHHHHhhCCCeEEEEc---CCCCCccEEEecHHHHHhcCCChhhhcCCCCCcccCCCCCHHHHHHHHHHHHcCCCc
Q 019399 16 YTLWVHEALDELPDSFTITD---PSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92 (341)
Q Consensus 16 ~~~~~~~~~~~~~~~i~~~d---~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (341)
..+.++.++++++++++++| .+ |.++++|+++++++|++.++++|+++..+.++.........+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~i~~~d~~d~~---~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (130)
T 2z6d_A 4 VSQELKTALSTLQQTFVVSDATQPH---CPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDTDKNEVAKIRDCVKNGKSY 80 (130)
T ss_dssp ---CHHHHHHHTTCEEEEEETTSTT---CCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHhcccceeeeeccCCC---CcEEEecHHHHHHhCcCHHHHcCCChhhccCCCCCchHHHHHHHHHHcCCcc
Confidence 44567889999999999999 88 9999999999999999999999998877777766666666777777888888
Q ss_pred EEEEEEEcCCCCeEEEEEEEEEeecCCCCcEEEEEEEEecCchhhhcc
Q 019399 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMR 140 (341)
Q Consensus 93 ~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~Dite~k~~~ 140 (341)
..+.....++|..+|+.+...|+.+ .+|.+.+++++++|||++++++
T Consensus 81 ~~~~~~~~~~g~~~~~~~~~~~~~~-~~g~~~~~~~~~~Dit~~~~~e 127 (130)
T 2z6d_A 81 CGRLLNYKKDGTPFWNLLTVTPIKD-DQGNTIKFIGMQVEVSKYTEGV 127 (130)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEEC-TTSCEEEEEEEEEECCTTC---
T ss_pred eeEEEEEcCCCcEEEEEEEEEEEEC-CCCCeeEEEEEEecchHHHHhh
Confidence 8888888899999999999999998 7899999999999999999874
No 19
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.64 E-value=1.6e-15 Score=134.16 Aligned_cols=74 Identities=8% Similarity=-0.020 Sum_probs=60.7
Q ss_pred CceEEeCCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCChHHHHHHhhhhhccCcc-hhhhhcccccceeE
Q 019399 252 QSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHSN-RASMHRRIKAHFGI 328 (341)
Q Consensus 252 ~~i~i~d~~~~d~~i~~~N~~~~~~~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~~~~~~~~ 328 (341)
..++..+.+ |+++|+|++++.++||+++|++|+++..++||+|.+.+...+...+..+.. ...+||...++|..
T Consensus 279 ~fi~~~~~d---g~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~~~l~~~~~~~~~eyR~~~kdG~~ 353 (387)
T 4f3l_B 279 EYVSRHAID---GKFVFVDQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQTREKITTNCYKFKIKDGSF 353 (387)
T ss_dssp EEEEEECTT---SBEEEECTHHHHHHCCCHHHHTTSBGGGTBCHHHHHHHHHHHHHHTTCSSCEECCCEEEECTTSCE
T ss_pred eEEEEECCC---CEEEEECCCcccccCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHhcCCCeeeEEEEEEccCCCE
Confidence 456667777 999999999999999999999999999999999999988888888876554 34567766555543
No 20
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=99.63 E-value=6e-15 Score=109.92 Aligned_cols=124 Identities=17% Similarity=0.238 Sum_probs=94.2
Q ss_pred hHhHHHHhhhhhhHHHHHHHHhhCCCeEEEEcCCCCCccEEEecHHHHHhcCCChhhhcCCCCCcccCCCCCHHHHHHHH
Q 019399 4 QLGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83 (341)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~ 83 (341)
++...++.+. +.+++++.++++++++++++|.+ |.++++|+++++++||++++++|+++..+.++.........+.
T Consensus 3 ~~~~~e~~l~-~~~~~~~~l~~~~~d~i~~~d~~---g~i~~~N~a~~~l~Gy~~~eliG~~~~~l~~~~~~~~~~~~~~ 78 (130)
T 1d06_A 3 HMLETEDVVR-ARDAHLRSILDTVPDATVVSATD---GTIVSFNAAAVRQFGYAEEEVIGQNLRILMPEPYRHEHDGYLQ 78 (130)
T ss_dssp HHHHHHHHHH-HHTSCHHHHHTTCSSEEEEEETT---SBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHH
T ss_pred hHHHHHHHHH-HHHHHHHHHHhhCcCeEEEECCC---CeEEEEcHHHHHHHCCCHHHHcCCcHHHHCCchhHHHHHHHHH
Confidence 4455666665 55667889999999999999999 9999999999999999999999998777765544333233333
Q ss_pred HHHHcCCC----cEEEEEEEcCCCCeEEEEEEEEEeecCCCCcEEEEEEEEecCc
Q 019399 84 EAIREERP----IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (341)
Q Consensus 84 ~~~~~~~~----~~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit 134 (341)
.....+.. ...+....++||+.+|+.+++.|+.+ . + ..+++++++|||
T Consensus 79 ~~~~~~~~~~~~~~~e~~~~~kdG~~~~~~~~~~~~~~-~-~-~~~~~~~~~DIT 130 (130)
T 1d06_A 79 RYMATGEKRIIGIDRVVSGQRKDGSTFPMKLAVGEMRS-G-G-ERFFTGFIRDLT 130 (130)
T ss_dssp HHHHHCCCSSTTSCEEEEEECTTSCEEEEEEEEEEEEE-T-T-EEEEEEEEEECC
T ss_pred HHHhcCCccccCCeeEEEEEeCCCCEEEEEEEEEEEEE-C-C-eEEEEEEEEECc
Confidence 33333332 23467778999999999999999976 3 3 345889999997
No 21
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=99.62 E-value=7.9e-15 Score=113.36 Aligned_cols=124 Identities=23% Similarity=0.437 Sum_probs=110.2
Q ss_pred hHHHHHHHHhhCCCeEEEEcCCCCCc---cEEEecHHHHHhcCCChhhhcCCCCCcccCCCCCHHHHHHHHHHHHcCCCc
Q 019399 16 YTLWVHEALDELPDSFTITDPSISGH---PIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92 (341)
Q Consensus 16 ~~~~~~~~~~~~~~~i~~~d~~~~~~---~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (341)
..++++.++++++++++++|.+ | +++++|+++++++|++.++++|+.+..+.++.........+...+..+..+
T Consensus 23 ~~~~~~~i~~~~~~~i~~~d~~---~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (162)
T 3sw1_A 23 NAQLLQSMVDASNDGIVVAEKE---GDDTILIYVNAAFEYLTGYSRDEILYQDCRFLQGDDRDQLGRARIRKAMAEGRPC 99 (162)
T ss_dssp CHHHHHHHHHTCSSEEEEEEEE---TTEEEEEEECHHHHHHHTCCHHHHTTSBGGGGTTTCCCCHHHHHHHHHHHHTCCE
T ss_pred hHHHHHHHHhhccCcEEEEeCC---CCccEEEEECHHHHHHHCCCHHHHcCCCcceecCCCcCHHHHHHHHHHHhcCCCC
Confidence 4678889999999999999999 8 999999999999999999999998877777666666667777888888888
Q ss_pred EEEEEEEcCCCCeEEEEEEEEEeecCCCCcEEEEEEEEecCchhhhccccc
Q 019399 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (341)
Q Consensus 93 ~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~Dite~k~~~~~~ 143 (341)
..+......+|..+|+.+...|+.+ .+|.+.+++++++|||+++++++++
T Consensus 100 ~~~~~~~~~~g~~~~~~~~~~~i~~-~~g~~~~~~~~~~DiTe~k~~e~~l 149 (162)
T 3sw1_A 100 REVLRNYRKDGSAFWNELSITPVKS-DFDQRTYFIGIQKDVSRQVELEREL 149 (162)
T ss_dssp EEEEEEECTTCCEEEEEEEEEEEEC-SSSSCEEEEEEEEECHHHHHHHHHH
T ss_pred cceEEEECCCCCEEEEEEEEEEeec-CCCCEEEEEEEEEeCcHHHHHHHHH
Confidence 8888888999999999999999998 7899999999999999999985443
No 22
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=99.62 E-value=2.3e-15 Score=109.62 Aligned_cols=111 Identities=9% Similarity=0.058 Sum_probs=93.2
Q ss_pred CCCeEEEEcCCCCCccEEEecHHHHHhcCCChhhhcCCC-CCcccCCCCCHHHHHHHHHHHHcCCCcEEEEEEEcCCCCe
Q 019399 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRN-GRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTP 105 (341)
Q Consensus 27 ~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~~ 105 (341)
+++++|.+|.. ++++.|+|+++++++||+++++.|.. +..+++|++.......+...+..+..+..++++.+++|..
T Consensus 2 a~~giw~~d~~--~~~~~~~n~~~~~l~G~~~~e~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~ 79 (115)
T 3h9w_A 2 TKAIPWKINWQ--TMAFEYIGPQIEALLGWPQGSWKSVEDWATRMHPEDQEWVVNFCVKQSECGVDHEADYRALHRDGHY 79 (115)
T ss_dssp -CCEEEEEETT--TTEEEEECTHHHHHHCSCGGGCCBHHHHHHSBCHHHHHHHHHHHHHHHHTTCCEEEEEEEECTTSCE
T ss_pred cceEEEEEEcC--CCcEEEEChhHHHHhCCChHHccCHHHHHHhcCHHHHHHHHHHHHHHHhcCCcccEEEEEEcCCCCE
Confidence 56799999944 28889999999999999999988832 2345677766666677778888888888999999999999
Q ss_pred EEEEEEEEEeecCCCCcEEEEEEEEecCchhhhcc
Q 019399 106 FWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMR 140 (341)
Q Consensus 106 ~~~~~~~~~~~~~~~g~~~~~~~~~~Dite~k~~~ 140 (341)
+|+.....|+++ ++|.+.+++|+..|||++|.+|
T Consensus 80 ~w~~~~~~~~~d-~~G~~~~~~G~~~Dit~~k~~~ 113 (115)
T 3h9w_A 80 VWIRDVVHVVRD-DSGEVEALIGFMFDISLEHHHH 113 (115)
T ss_dssp EEEEEEEEEEEC-TTSCEEEEEEEEEECGGGGC--
T ss_pred EEEEEEEEEEEC-CCCCEEEEEEEEeccCcccccc
Confidence 999999999998 8999999999999999999974
No 23
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=99.61 E-value=3e-14 Score=104.13 Aligned_cols=110 Identities=11% Similarity=0.137 Sum_probs=86.6
Q ss_pred hhHHHHHHHHhhCCCeEEEEcCCCCCccEEEecHHHHHhcCCChhhhcCCCCCcccCCCCCHHHHHHHHHHHHcCCCcEE
Q 019399 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94 (341)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (341)
.++++++.++++++++++++|.+ |+++++|+++++++||++++++|+++..+.++.... ........+..+..+..
T Consensus 8 ~se~~~~~l~e~~~d~i~~~d~~---g~i~~vN~a~~~l~Gy~~~el~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 83 (117)
T 2r78_A 8 FQSNAYRALFEHAIDGIFIMDAE---GHYLDVNPAICSAIGYTRDEFLALDWGVLSRGVDSG-WAAASLARIVGGEPLRE 83 (117)
T ss_dssp HHHHHHHHHHHHCSSEEEEECTT---SBEEEECHHHHHHHCCCHHHHTTCBTTTTTTCSTTS-HHHHHHHHHHTTCCEEE
T ss_pred HhHHHHHHHHhcCCceEEEECCC---CCEEEecHHHHHHHCcCHHHHcCCCHHHhCCccchh-HHHHHHHHHHcCCcEEE
Confidence 45678899999999999999999 999999999999999999999999866554433221 22233445566667778
Q ss_pred EEEEEcCCCCeEEEEEEEEEeecCCCCcEEEEEEEEecCc
Q 019399 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (341)
Q Consensus 95 e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit 134 (341)
+.+..++||+.+|+.++..|+. +|. ++++++|||
T Consensus 84 e~~~~~kdG~~~~v~~~~~~~~---~g~---~~~i~~DIT 117 (117)
T 2r78_A 84 ERTVWTRNGDQLTVELSAHLLP---DGK---ILGIARDVS 117 (117)
T ss_dssp EEEEECTTSCEEEEEEEEEECT---TSC---EEEEEEC--
T ss_pred EEEEEecCCCEEEEEEEEEEec---CCe---EEEEEEeCC
Confidence 8889999999999999999884 344 578889997
No 24
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=99.60 E-value=1.4e-14 Score=106.03 Aligned_cols=112 Identities=20% Similarity=0.251 Sum_probs=77.9
Q ss_pred hCCCeEEEEcCCCCCccEEEecHHHHHhcCCChhhhcCCCCCcccCCCCCHHHHHHHHHHHHcCCC----cEEEEEEEcC
Q 019399 26 ELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP----IEVNLLNYKK 101 (341)
Q Consensus 26 ~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~e~~~~~~ 101 (341)
+++++++++|.+ |.++++|+++++++||++++++|++...+.++.........+......+.. ...+....++
T Consensus 1 ~~~d~i~~~d~~---g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (119)
T 2vv6_A 1 TIPDAMIVIDGH---GIIQLFSTAAERLFGWSELEAIGQNVNILMPEPDRSRHDSYISRYRTTSDPHIIGIGRIVTGKRR 77 (119)
T ss_dssp -CCCEEEEEETT---SBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHHHHHCCCSSTTTCEEEEEECT
T ss_pred CCcceEEEECCC---CeEEEEhHHHHHHhCCCHHHHcCCCHHHhCCchHHHHHHHHHHHHhcCCCcccCCCceEEEEEeC
Confidence 367899999999 999999999999999999999999877766544332222333333333332 3356777899
Q ss_pred CCCeEEEEEEEEEeecCCCCcEEEEEEEEecCchhhhccccc
Q 019399 102 DGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (341)
Q Consensus 102 dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~Dite~k~~~~~~ 143 (341)
||+.+|+.+++.|+.+ . + ..+++++++|||++|++|+++
T Consensus 78 dG~~~~~~~~~~~~~~-~-~-~~~~~~~~~DITerk~~e~~l 116 (119)
T 2vv6_A 78 DGTTFPMHLSIGEMQS-G-G-EPYFTGFVRDLTEHQQTQARL 116 (119)
T ss_dssp TSCEEEEEEEEEEEEE-T-T-EEEEEEEEEECC---------
T ss_pred CCCEEEEEEEEEEEEE-C-C-eEEEEEEEEEcHHHHHHHHHH
Confidence 9999999999999976 3 3 346889999999999986554
No 25
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=99.59 E-value=2.7e-14 Score=103.07 Aligned_cols=111 Identities=16% Similarity=0.225 Sum_probs=89.7
Q ss_pred HHHHHHHhhCCCeEEEEcCCCCCccEEEecHHHHHhcCCChhhhcCCCCCcccCCCCCHHHHHHHHHHHHcCCCcEEE-E
Q 019399 18 LWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVN-L 96 (341)
Q Consensus 18 ~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e-~ 96 (341)
++++.++++++++++++|.+ |+++++|+++++++|+++++++|++...+. +.........+...+. +.....+ .
T Consensus 3 ~~~~~~~~~~~~~i~~~d~~---g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~ 77 (114)
T 3luq_A 3 ERLRLFTEHAPAALAMFDRE---MRYLAVSRRWREDYGLGDGDILGMSHYDIF-PEIGEEWKSVHRRGLA-GEVIRVEED 77 (114)
T ss_dssp HHHHHHHHTCSSEEEEEETT---CBEEEECHHHHHHTTCCSSCCTTCBHHHHC-TTCCHHHHHHHHHHHT-TCCEEEEEE
T ss_pred HHHHHHHhcCCceEEEEcCC---cEEEEECHHHHHHHCCCHHHHcCCcHHHHC-CccHHHHHHHHHHHhc-CCcceeeee
Confidence 56788999999999999999 999999999999999999999999877665 4444444444444444 4444443 3
Q ss_pred EEEcCCCCeEEEEEEEEEeecCCCCcEEEEEEEEecCc
Q 019399 97 LNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (341)
Q Consensus 97 ~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit 134 (341)
....++|..+|+.+...|+.+ .+|.+.+++++++|||
T Consensus 78 ~~~~~~g~~~~~~~~~~p~~~-~~g~~~~~~~~~~DIT 114 (114)
T 3luq_A 78 CFVRADGRTQWLRWEVRPWYE-GEGRVGGVVIFTEDIT 114 (114)
T ss_dssp EEEC--CCEEEEEEEEEEEEC-TTSCEEEEEEEEEECC
T ss_pred EEEcCCCcEEEEEEEEEEeEC-CCCCEEEEEEEEeeCC
Confidence 777889999999999999998 8999999999999997
No 26
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=99.58 E-value=7.2e-15 Score=112.15 Aligned_cols=120 Identities=16% Similarity=0.121 Sum_probs=92.8
Q ss_pred hhHHHHHHHHhhCCCeEEEEcCCCCCccEEEecHHHHHhcCCChhhhcCCCCCcccCCCCCHHHHHHHHHHHHcCCCcEE
Q 019399 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94 (341)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (341)
.....+..++++++++++++|.+ |+++++|+++++++|+++++++|+++..+.+. ....+...+..++..|.+...
T Consensus 19 ~~~~~l~~il~~~~~gi~v~D~~---g~I~~~N~a~~~~~G~~~~eviG~~~~~~~p~-~~~~~~~~l~~vl~~G~~~~~ 94 (152)
T 3mxq_A 19 KSRLLLSELLDQLSFALCIVRND---YVIVKVNEYFESRVIFDGETMQGKNILELFPE-SADYLKRKIDTALVIESSSFS 94 (152)
T ss_dssp HHHHHHHHHHHHHCCEEEEEETT---SBEEEECHHHHHTSSSCHHHHTTSBHHHHSGG-GHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEcCC---CEEEEECHHHHHHHCcCHHHHCCCCHHHhcCC-hHHHHHHHHHHHHhcCCceee
Confidence 44556789999999999999999 99999999999999999999999998777666 444455667778877765322
Q ss_pred EE------------EEEcCCCCeEEEEEEEEEeecCCCCcEEEEEEEEecCchhhhc
Q 019399 95 NL------------LNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (341)
Q Consensus 95 e~------------~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~Dite~k~~ 139 (341)
.. +...++|...|..+++.|+.+ ++|.+.+++.+++|||+++.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~Pl~d-~~G~v~gv~~ii~DVTe~~~a 150 (152)
T 3mxq_A 95 SWEQKPHLLPFKSSRPVSGEEEQMYQNLEVIPIHS-EDGTIEHVCLCVYDVTIQASQ 150 (152)
T ss_dssp ECCSSSCSSCC----------CCEEEEEEEEEEEC-TTSCEEEEEEEEEEEECC---
T ss_pred ecccccccccccccCCCCCCCcEEEEEEEEEEEEC-CCCCEEEEEEEEEECCHHHhc
Confidence 11 112345677888999999999 899999999999999999875
No 27
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=99.58 E-value=9.3e-15 Score=112.63 Aligned_cols=123 Identities=12% Similarity=0.120 Sum_probs=99.0
Q ss_pred hhHHHHHHHHhhCCCeEEEEc-CCCCCccEEEecHHHHHhcCCChhhhcCCCCCcccCCCCCHHHHHHHHHHHHcCCCcE
Q 019399 15 RYTLWVHEALDELPDSFTITD-PSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIE 93 (341)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d-~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 93 (341)
+..++++.++++++.+++++| .+ ++++++|+++++++|++ +++|+++..+.++.........+.+++..+.+..
T Consensus 14 ~~~~~~~~~~~~~~~~i~~~d~~~---~~i~~~N~~~~~~~g~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 88 (158)
T 3k3c_A 14 GAAEDVRRIFEHIPAILVGLEGPD---HRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQIYEMLDRVYQTGEPQS 88 (158)
T ss_dssp CCHHHHHHHHHHCSSEEEEEETTT---TEEEEECHHHHHHCTTC--CSTTSBHHHHSGGGGGTTHHHHHHHHHHHCCCEE
T ss_pred HHHHHHHHHHhcCCceEEEEECCC---cEeHHHHHHHHHHcCCc--hhcCCcHHHhCCchhHHHHHHHHHHHHHhCCccc
Confidence 456788999999999999999 98 99999999999999999 8899987777665554445566777777777754
Q ss_pred EEEE-E--EcC-C-CCeEEEEEEEEEeecCCCCcEEEEEEEEecCchhhhccccc
Q 019399 94 VNLL-N--YKK-D-GTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (341)
Q Consensus 94 ~e~~-~--~~~-d-g~~~~~~~~~~~~~~~~~g~~~~~~~~~~Dite~k~~~~~~ 143 (341)
.... + ... + |...|+.+...|+.+ .+|.+.+++++++|||++|++++++
T Consensus 89 ~~~~~~~~~~~~~~g~~~~~~~~~~pi~~-~~g~~~g~~~~~~DITe~k~~e~~l 142 (158)
T 3k3c_A 89 GSEWRLQTDYDGSGVEERYFDFVVTPRRR-ADGSIEGVQLIVDDVTSRVRARQAA 142 (158)
T ss_dssp EEEEEEEEESSSSCEEEEEEEEEEEEEEC-TTSCEEEEEEEEEECHHHHHHHHHH
T ss_pred ccceeEEeccCCCCcceEEEEEEEEEeEC-CCCCEEEEEEEEEehhHHHHHHHHH
Confidence 4322 2 222 2 667899999999998 8999999999999999999985443
No 28
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.57 E-value=2.8e-14 Score=124.16 Aligned_cols=117 Identities=38% Similarity=0.738 Sum_probs=106.2
Q ss_pred HHHhhCCCeEEEEcC---CCCCccEEEecHHHHHhcCCChhhhcCCCCCcccCCCCCHHHHHHHHHHHHcCCCcEEEEEE
Q 019399 22 EALDELPDSFTITDP---SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLN 98 (341)
Q Consensus 22 ~~~~~~~~~i~~~d~---~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 98 (341)
.++++++++++++|. + |+++++|+++++++||++++++|+++..+.++.........+...+..+..+..+.+.
T Consensus 15 ~~~~~~~~~i~~~D~~~~~---g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 91 (332)
T 2wkq_A 15 TTLERIEKNFVITDPRLPD---NPIIFASDSFLQLTEYSREEILGRNARFLQGPETDRATVRKIRDAIDNQTEVTVQLIN 91 (332)
T ss_dssp CCGGGCCSEEEEECTTSTT---CCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred hHhhcCCCcEEEecCCCCC---CCEEEeehHHHHHhCCCHHHHcCCCchhhcCCCCCHHHHHHHHHHHHcCCeeEEEEEE
Confidence 468899999999999 8 9999999999999999999999999888887777777777888888888889999999
Q ss_pred EcCCCCeEEEEEEEEEeecCCCCcEEEEEEEEecCchhhhcccc
Q 019399 99 YKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142 (341)
Q Consensus 99 ~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~Dite~k~~~~~ 142 (341)
.++||..+|+.+...|+.+ ..|.+.+++++.+|||+++++++.
T Consensus 92 ~~~dG~~~~~~~~~~pi~d-~~g~~~~~v~~~~DITe~k~~e~~ 134 (332)
T 2wkq_A 92 YTKSGKKFWNLFHLQPMRD-QKGDVQYFIGVQLDGTEHVRDAAE 134 (332)
T ss_dssp ECTTCCEEEEEEEEEEEEC-TTSCEEEEEEEEEEESSCCCHHHH
T ss_pred EcCCCCEEEEeeEEEEeEc-CCCCEEEEEEEeccCchhhhhhhh
Confidence 9999999999999999998 899999999999999999887433
No 29
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=99.56 E-value=6.8e-14 Score=114.87 Aligned_cols=111 Identities=20% Similarity=0.465 Sum_probs=102.0
Q ss_pred HHHHHHHhhCCCeEEEEcCCCCCccEEEecHHHHHhcCCChhhhcCCCCCcccCCCCCHHHHHHHHHHHHcCCCcEEEEE
Q 019399 18 LWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLL 97 (341)
Q Consensus 18 ~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 97 (341)
+.+..++++++++++++|.+ |+++++|++|++++||++++++|+++..+.++.........+++.+..+..+..++.
T Consensus 111 ~~~~~~~~~~~~~i~~~d~~---g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 187 (227)
T 3ewk_A 111 ARLKQAMDANSEMILLTDRA---GRIIYANPALCRFSGMAEGELLGQSPSILDSPLADQETLAAMQEALQAGQPWSGRLL 187 (227)
T ss_dssp HHHHHHHHTCCSEEEEECTT---SCEEEECHHHHHHHTCCTHHHHSSCGGGGBCTTSCHHHHHHHHHHHHHTCCEECCEE
T ss_pred HHHHHHHhcCcCeEEEEcCC---CcEEEEchHHHHHhCCCHHHHcCCChhhccCCCCCHHHHHHHHHHHHcCCceeEEEE
Confidence 45678899999999999999 999999999999999999999999988888888788888888899999999999999
Q ss_pred EEcCCCC------eEEEEEEEEEeecCCCCcEEEEEEEEec
Q 019399 98 NYKKDGT------PFWMLFKMSLVFGKEDGRATHFVAVQVP 132 (341)
Q Consensus 98 ~~~~dg~------~~~~~~~~~~~~~~~~g~~~~~~~~~~D 132 (341)
.++++|. .+|+.++..|+++ .+|.+.+++++.+|
T Consensus 188 ~~~k~G~~~~dg~~~~~~~~~~pi~d-~~g~~~~~v~i~~D 227 (227)
T 3ewk_A 188 NRRRTGPAPHDAEDYWAEISTTPIHT-DGNGLVGYVQIQHD 227 (227)
T ss_dssp EEEECCSSSSCEEEEEEEEEEEEEEC-SSSCEEEEEEEEEC
T ss_pred EECCCCCcCcccceEEEEEEEEEEEC-CCCCEEEEEEEecC
Confidence 9999887 8999999999999 89999999999987
No 30
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis}
Probab=99.56 E-value=4.4e-14 Score=112.15 Aligned_cols=122 Identities=12% Similarity=0.136 Sum_probs=98.1
Q ss_pred hhHHHHHHHHhhCCCeEEEEc-CCCCCccEEEecHHHHHhcCCChhhhcCCCCCcccCCCCCHHHHHHHHHHHHcCCCcE
Q 019399 15 RYTLWVHEALDELPDSFTITD-PSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIE 93 (341)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d-~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 93 (341)
+..++++.++++++++++++| .+ |+++++|+++++++|++ +++|+++..+.++.........+..++..+....
T Consensus 34 ~~~~~l~~l~~~~~~~i~~~d~~~---g~i~~~N~a~~~l~G~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 108 (185)
T 3kx0_X 34 GAAEDVRRIFEHIPAILVGLEGPD---HRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQIYEMLDRVYQTGEPQS 108 (185)
T ss_dssp CCHHHHHHHHHHCSSEEEEEETTT---TEEEEECHHHHHHCCCC--SCTTSBHHHHCTTSCSSSSHHHHHHHHHHCCCEE
T ss_pred hhHHHHHHHHhcCCceEEEEECCC---cEEEEEcHHHHHHcCCc--cccCCcHHHHCCchhhhhHHHHHHHHHHcCCccc
Confidence 456789999999999999999 98 99999999999999999 8899987777766655445566777777777755
Q ss_pred EEEEEE---cC-C-CCeEEEEEEEEEeecCCCCcEEEEEEEEecCchhhhcccc
Q 019399 94 VNLLNY---KK-D-GTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142 (341)
Q Consensus 94 ~e~~~~---~~-d-g~~~~~~~~~~~~~~~~~g~~~~~~~~~~Dite~k~~~~~ 142 (341)
...... .+ + |...|+.+...|+.+ .+|.+.+++++++|||++|+++++
T Consensus 109 ~~~~~~~~~~~~~gg~~~~~~~~~~pi~~-~~g~~~g~~~~~~DITerk~~e~~ 161 (185)
T 3kx0_X 109 GSEWRLQTDYDGSGVEERYFDFVVTPRRR-ADGSIEGVQLIVDDVTSRVRARQA 161 (185)
T ss_dssp EEEEEEC--------CCEEEEEEEEEEEC-TTSCEEEEEEEEEECHHHHTTCC-
T ss_pred ccceeEEeeccCCCCccEEEEEEEEEEEC-CCCCEEEEEEEEEeCCHHHHHHHH
Confidence 442222 22 2 777999999999998 899999999999999999999666
No 31
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=99.55 E-value=1.7e-14 Score=104.91 Aligned_cols=114 Identities=10% Similarity=0.052 Sum_probs=100.0
Q ss_pred HHHHHHHHhhCCCeEEEEcCCCCCccEEEecHHHHHhcCCChhhhcCCCC--CcccCCCCCHHHHHHHHHHHHcCCCcEE
Q 019399 17 TLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNG--RMFQGPRTNRRTIMEIREAIREERPIEV 94 (341)
Q Consensus 17 ~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (341)
+++++.++++++++++.+|.+ +.++++|+++.+++||+++++.+... ..+.+|++.......+...+..+..+..
T Consensus 3 ~~~~~~l~~~~~~~i~~~d~~---~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~~ 79 (118)
T 3icy_A 3 AEELQALVDNIPAAIYHLDVS---GQATIRFRPPAFLKTLVSEHAGTTRLNTLSMIHHDDRHMLSNAYSKLREAKHSLTL 79 (118)
T ss_dssp HHHHHHHHTTCCCCCEEECTT---SCEEECCCCCGGGGGGEEEETTEEEEGGGGGBCGGGHHHHHHHHHHHHHSCCEEEE
T ss_pred HHHHHHHHhcCCceEEEEEcC---CCceEEechhHhhcCCCHHHccCChhHHHHHcCHHHHHHHHHHHHHHHhcCCCceE
Confidence 567889999999999999999 99999999999999999999877642 4466777766666777777778888888
Q ss_pred EEEEEcCCCCeEEEEEEEEEeecCCCCcEEEEEEEEecCc
Q 019399 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (341)
Q Consensus 95 e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit 134 (341)
++++.+++|..+|+.....|+.+ ++|.+.+++++++|||
T Consensus 80 e~r~~~~~g~~~w~~~~~~~~~~-~~g~~~~~~g~~~DIT 118 (118)
T 3icy_A 80 VYRIVTPEGKLHWIEDHMRSSFS-DDGLFSGIDGILCEVT 118 (118)
T ss_dssp EEEEECTTCCEEEEEEEEEEEEC-TTSCEEEEEEEEEECC
T ss_pred EEEEECCCCCEEEEEEEEEEEEC-CCCCEEEEEEEEEecC
Confidence 99999999999999999999998 8999999999999997
No 32
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=99.53 E-value=1.1e-13 Score=101.37 Aligned_cols=112 Identities=11% Similarity=0.085 Sum_probs=92.8
Q ss_pred HHHhhCCCeEEEEcCCCCCccEEEecHHHHHhcCCChhhhcCCCCCcccCCCCCHHHHHHHHHHHHcCC-CcEEEEEEEc
Q 019399 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER-PIEVNLLNYK 100 (341)
Q Consensus 22 ~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~ 100 (341)
.++++++++++++|.+ |+++++|+++++++||++++++|+++..+.++++.......+.+.+..+. ....++++.+
T Consensus 7 ~~~~~~~~~i~~~d~~---g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~~e~r~~~ 83 (121)
T 2kdk_A 7 EINVKPTEFITRFAVN---GKFVYVDQRATAILGYLPQELLGTSCYEYFHQDDHNNLTDKHKAVLQSKEKILTDSYKFRA 83 (121)
T ss_dssp CCCCCSSEEEEEECTT---SBEEEECTHHHHHTCCCTTTSBTSBTTTTBCSSSHHHHHHHHHHHHTSSSCEEEEEEEEEC
T ss_pred ccccCCccEEEEECCC---eeEEEEChhHHHHHCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHhCCCCCccEEEEEEE
Confidence 3677899999999999 99999999999999999999999987778777776655555565565433 3567888899
Q ss_pred CCCCeEEEEEEEEEeecCCC-CcEEEEEEEEecCchhh
Q 019399 101 KDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPIVSRK 137 (341)
Q Consensus 101 ~dg~~~~~~~~~~~~~~~~~-g~~~~~~~~~~Dite~k 137 (341)
++|..+|+.+...|+.+ .. +.+.+++++..||++.+
T Consensus 84 ~dG~~~~~~~~~~~~~d-~~~~~~~~~v~~~~~i~~~~ 120 (121)
T 2kdk_A 84 KDGSFVTLKSQWFSFTN-PDTKELEYIVSVNTLVLGHS 120 (121)
T ss_dssp SSSCEEEEEEEEEEEEC-CSSSCEEEEEEEEECCSSCC
T ss_pred cCCCEEEEEEEEEEEEC-CCCCeeeEEEEEEEeccccC
Confidence 99999999999999987 54 56777899999998764
No 33
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=99.52 E-value=1.7e-13 Score=102.87 Aligned_cols=115 Identities=39% Similarity=0.743 Sum_probs=103.0
Q ss_pred HHHHhhCCCeEEEEcC---CCCCccEEEecHHHHHhcCCChhhhcCCCCCcccCCCCCHHHHHHHHHHHHcCCCcEEEEE
Q 019399 21 HEALDELPDSFTITDP---SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLL 97 (341)
Q Consensus 21 ~~~~~~~~~~i~~~d~---~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 97 (341)
+.++++++++++++|. + +.++++|+++++++|++.++++|+++..+.++.........+...+..+..+..+..
T Consensus 5 ~~~~~~~~~~i~~~d~~~~~---~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (146)
T 2v0u_A 5 ATTLERIEKNFVITDPRLPD---NPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATVRKIRDAIDNQTEVTVQLI 81 (146)
T ss_dssp CCTGGGSSSCEEEECTTSTT---CCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHhcCCCcEEEEcCCCCC---ceEEEEcHHHHHHHCcCHHHHcCCCHHHhcCCcCChHHHHHHHHHHhcCCCcceEEE
Confidence 4578999999999999 8 999999999999999999999999887777777776667777788888888888888
Q ss_pred EEcCCCCeEEEEEEEEEeecCCCCcEEEEEEEEecCchhhhc
Q 019399 98 NYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (341)
Q Consensus 98 ~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~Dite~k~~ 139 (341)
...++|..+|+.+...|+.+ .+|.+.+++++++|||++++.
T Consensus 82 ~~~~~g~~~~~~~~~~~~~~-~~g~~~~~~~~~~Dit~~~~~ 122 (146)
T 2v0u_A 82 NYTKSGKKFWNLFHLQPMRD-QKGDVQYFIGVQLDGTEHVRD 122 (146)
T ss_dssp EECTTCCEEEEEEEEEEEEC-TTSCEEEEEEEEEEESSCCCH
T ss_pred EEecCCcEEEEEEEEEEeEC-CCCCEEEEEEEEeechHHHHH
Confidence 88999999999999999998 889999999999999999874
No 34
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=99.49 E-value=1e-12 Score=96.93 Aligned_cols=120 Identities=13% Similarity=0.163 Sum_probs=85.4
Q ss_pred HhHHHHhhhhhhHHHHHHHHhhCCCeEEEEcCCCCCccEEEecHHHHHhcCCChhhhc--CCCCCcccCCCCCHHHHHHH
Q 019399 5 LGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEII--GRNGRMFQGPRTNRRTIMEI 82 (341)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~--g~~~~~l~~~~~~~~~~~~~ 82 (341)
.+..++.+. +.+++++.++++++++++++|.+ |+++++|+++++++||++++++ |++...+.+ +.......+
T Consensus 5 r~~~e~~L~-~~~~~~~~l~e~~~~~i~~~d~~---g~i~~~N~a~~~~~G~~~~el~g~g~~~~~~~~--~~~~~~~~~ 78 (126)
T 3bwl_A 5 RKRREKRLE-ETSSRLEALFENSPDMIDVLDAD---GTICEVNQRFCAELGYDESEVLGRSIWEFDLMF--DAEDVQTQL 78 (126)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHCSSEEEEECTT---CBEEEECHHHHHHHTCCGGGTTTSBGGGTBTTC--CHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHhhCCcEEEEEcCC---CCEEEEcHHHHHHhCCCHHHHhhCCCchhhccC--CHHHHHHHH
Confidence 445556565 66788999999999999999999 9999999999999999999994 565544444 212111111
Q ss_pred HHHHHcCCCcEEEEEEEcCCCCeEEEEEEEEEeecCCCCcEEEEEEEEecCc
Q 019399 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (341)
Q Consensus 83 ~~~~~~~~~~~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit 134 (341)
.. ...+.....+..+.++||..+|+.++..++.. .|.. .++++++|||
T Consensus 79 ~~-~~~~~~~~~e~~~~~~dG~~~~~~~~~~~~~~--~~~~-~~~~~~~DIT 126 (126)
T 3bwl_A 79 SG-FSVDERRKFEGLYERRDGSTMSVEVHLLRFNL--EGED-RFLAISRDIT 126 (126)
T ss_dssp HT-CCTTCEEEEEEEEECTTSCEEEEEEEEEEEEE--TTEE-EEEEEEEEC-
T ss_pred HH-HhcCCCcceEEEEEeCCCCEEEEEEEeEEEec--CCcE-EEEEEEEeCC
Confidence 11 11223344566777899999999988888754 4544 5778899997
No 35
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=99.49 E-value=5.8e-14 Score=101.20 Aligned_cols=86 Identities=36% Similarity=0.620 Sum_probs=72.5
Q ss_pred cCCceEEeCCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCChHHHHHHhhhhhccCcchhh---hhcccccce
Q 019399 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHSNRAS---MHRRIKAHF 326 (341)
Q Consensus 250 ~~~~i~i~d~~~~d~~i~~~N~~~~~~~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~r~~~~~~ 326 (341)
++++|+++|.+.++|+|+|+|++|++++||+++|++|+++..+.+|+........+++++..+..+.. .++++|+..
T Consensus 2 ~~~~i~i~d~~~~~g~i~~~N~a~~~l~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~ 81 (109)
T 1n9l_A 2 LRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEGTDPKEVQKIRDAIKKGEACSVRLLNYRKDGTPF 81 (109)
T ss_dssp CSCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEE
T ss_pred CccEEEEEcCCCCCCeEEEEchHHHHHHCcCHHHHcCCCchhcCCCCCCHHHHHHHHHHHHcCCcEEEEEEEEcCCCCEE
Confidence 56899999976566999999999999999999999999998888888877778888888888877654 456777777
Q ss_pred eEEEEEecc
Q 019399 327 GIFFTYHPS 335 (341)
Q Consensus 327 ~~~~~~~p~ 335 (341)
|+.+.++|.
T Consensus 82 ~~~~~~~pi 90 (109)
T 1n9l_A 82 WNLLTVTPI 90 (109)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEE
Confidence 888877775
No 36
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=99.49 E-value=5.3e-13 Score=96.92 Aligned_cols=108 Identities=10% Similarity=0.117 Sum_probs=85.2
Q ss_pred hHHHHHHHHhhCCCeEEEEcCCCCCccEEEecHHHHHhcCCChhhhcCCCCCcccCCCCCHHHHHHHHHHHHcCCCcEEE
Q 019399 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVN 95 (341)
Q Consensus 16 ~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e 95 (341)
..+.++.++++++++++++|.+ |+++++|+++++++||++++++|+++..+.+...... ...+..+..+..+
T Consensus 11 ~~~~~~~~~~~~~~~i~~~d~~---g~i~~~N~~~~~l~G~~~~el~g~~~~~~~~~~~~~~-----~~~~~~~~~~~~e 82 (118)
T 3olo_A 11 EFKFAHYLINNAVEASFCLGDN---WQFLYVNDATCRMTEYSREQLLSMNLQDIDVDFALHD-----WEEIRQKNNYTFK 82 (118)
T ss_dssp HHHHHHHHHHHCSSEEEEECTT---SBEEEECHHHHHHHCCCHHHHTTCBGGGTBTTGGGSC-----HHHHHHHSEEEEE
T ss_pred HHHHHHHHHhcCCceEEEECCC---CcEEEEHHHHHHHHCCCHHHHhCCChhhcccccCHHH-----HHHHHhcCcEEEE
Confidence 3456778999999999999999 9999999999999999999999998777664332221 2223344566788
Q ss_pred EEEEcCCCCeEEEEEEEEEeecCCCCcEEEEEEEEecCc
Q 019399 96 LLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (341)
Q Consensus 96 ~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit 134 (341)
....+++|..+|+.+...|+.. .+. .+++++++|||
T Consensus 83 ~~~~~~~g~~~~~~~~~~~~~~--~~~-~~~~~~~~DIT 118 (118)
T 3olo_A 83 TRYRSQSGRIFLVEMSLTFLED--QER-RFSCVFVREKS 118 (118)
T ss_dssp EEEECTTCCEEEEEEEEEEEEE--TTE-EEEEEEEEEC-
T ss_pred EEEEccCCCEEEEEEEEEEEEE--CCc-cEEEEEEEeCC
Confidence 8889999999999999999976 343 35778999997
No 37
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Probab=99.48 E-value=1.4e-12 Score=96.87 Aligned_cols=116 Identities=26% Similarity=0.478 Sum_probs=97.2
Q ss_pred HHHHHHHHhhCCCeEEEEcC---CCCCccEEEecHHHHHhcCCChhhhcCCC--CCcccCCCCCHHHHHHHHHHHHcCCC
Q 019399 17 TLWVHEALDELPDSFTITDP---SISGHPIVFASRGFLKMSGFSRAEIIGRN--GRMFQGPRTNRRTIMEIREAIREERP 91 (341)
Q Consensus 17 ~~~~~~~~~~~~~~i~~~d~---~~~~~~i~~~N~~~~~~~G~~~~e~~g~~--~~~l~~~~~~~~~~~~~~~~~~~~~~ 91 (341)
.+.+...+++++.+++++|. + |.++++|+++++++|++.++++|++ ...+.++.........+...+..+..
T Consensus 18 l~~~~~~~~~~~~~i~~~d~~~~~---g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (138)
T 2l0w_A 18 LDTIIRKFEGQSRKFIIANARVEN---CAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPRTQRRAAAQIAQALLGAEE 94 (138)
T ss_dssp HHHHHHHHTTTTSEEEEEESSSTT---CBEEEECSHHHHHHSCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHTTCSSC
T ss_pred HHHHHHHHhcCCCCEEEEecCCCC---CEEEEeCHHHHHHhCCCHHHHcCCCCcccccCCcccchhHHHHHHHHHhhcCC
Confidence 34455667789999999999 8 9999999999999999999999997 45555555555555666666777777
Q ss_pred cEEEEEEEcCCCCeEEEEEEEEEeecCCCCcEEEEEEEEecCchh
Q 019399 92 IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136 (341)
Q Consensus 92 ~~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~Dite~ 136 (341)
+..+.....++|..+|+.+...|+.+ .+|.+.+++++++|||++
T Consensus 95 ~~~~~~~~~~~g~~~~~~~~~~~~~~-~~g~~~~~~~~~~Dit~~ 138 (138)
T 2l0w_A 95 RKVEIAFYRKDGSCFLCLVDVVPVKN-EDGAVIMFILNFEVVMEK 138 (138)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEEEEC-TTSCEEEEEEEEEEEEEC
T ss_pred ceeEEEEECCCCCEEEEEEEEEEEeC-CCCCEEEEEEEEEeccCC
Confidence 77888888899999999999999998 789999999999999974
No 38
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=99.47 E-value=1.6e-13 Score=100.82 Aligned_cols=116 Identities=12% Similarity=0.112 Sum_probs=86.5
Q ss_pred HHHHhhCCCeEEEEcCCCCCccEEEecHHHHHhcCCChhhhcCCCCCcccCCCCCHHHHHHHHHHHHcCCCcEEEEEEEc
Q 019399 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYK 100 (341)
Q Consensus 21 ~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 100 (341)
+.++++++++++++|.+ |.++++|+++++++|+++++++|+++..+.++.+.......+......+.. ..+.....
T Consensus 2 ~~l~~~~~~~i~~~d~~---g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 77 (126)
T 3mjq_A 2 KNFLETIEDMILIINRE---GRLLYANTAVPKKLGYTHEELMSMHILTITSAGKMAEGEKILAELFAGKKE-SLPLSLEK 77 (126)
T ss_dssp CTTGGGCSSEEEEEETT---SBEEEECTHHHHHHSCCHHHHHHSBHHHHHCTTCHHHHHHHHHHHHHTCCS-EEEEEEEC
T ss_pred hhHHhhCCceEEEEeCC---CcEEEEcHHHHHHHCCCHHHHcCCCHHHHcCchhHHHHHHHHHHHHhCCCc-eeEEEEEc
Confidence 35789999999999999 999999999999999999999999877777666555445555555554444 77788888
Q ss_pred CCCCeEEEEEEEEEeecCCCCcEEEEEEEEecCchhhhccccc
Q 019399 101 KDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (341)
Q Consensus 101 ~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~Dite~k~~~~~~ 143 (341)
++|..+|+.+...|... +...+++++++|||++|++++..
T Consensus 78 ~~g~~~~~~~~~~~~~~---~~~~~~~~~~~DITe~k~a~~~~ 117 (126)
T 3mjq_A 78 KEGTSIPAKARIWQGKW---HNEPCLFAIIKDLSKEERASSPP 117 (126)
T ss_dssp TTSCEEEEEEEEEEEES---SSSEEEEEEEEECC---------
T ss_pred cCCCEEEEEEEEEeeeE---CCceEEEEEEEechHHHHhhccc
Confidence 99999999999887754 33567899999999999985443
No 39
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=99.45 E-value=6.9e-13 Score=113.29 Aligned_cols=74 Identities=11% Similarity=-0.036 Sum_probs=59.1
Q ss_pred eEEeCCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCChHHHHHHhhhhhccC-cch-hhhhcccccceeEEE
Q 019399 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKH-SNR-ASMHRRIKAHFGIFF 330 (341)
Q Consensus 254 i~i~d~~~~d~~i~~~N~~~~~~~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~-~~~~r~~~~~~~~~~ 330 (341)
+...+.+ |+++|+|+++..++||.++|++|+++..++||+|.....+.+.+.+..+ ... ...||...++|...|
T Consensus 179 itrh~~d---G~~~yvd~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~~g~~~~~~~yR~~~kdG~~vw 254 (320)
T 4dj2_A 179 TTRHTPS---CLFQDVDERAAPLLGYLPQDLLGAPVLLFLHPEDRPLMLAIHKKILQLAGQPFDHSPIRFCARNGEYVT 254 (320)
T ss_dssp EEEECTT---CBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHTTSSSCCEECCCEEEECSSSCEEE
T ss_pred EEEecCC---ceEEEcCcceeccCCcChHHHcCCcHHHhCCHHHHHHHHHHHHHHHhcCCCcccceEEEEEccCCCEEE
Confidence 4455666 9999999999999999999999999999999999998888888888744 344 347776666654433
No 40
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=99.45 E-value=3.7e-12 Score=90.32 Aligned_cols=107 Identities=27% Similarity=0.520 Sum_probs=88.4
Q ss_pred CeEEEEcCCCCCccEEEecHHHHHhcCCChhhhcCCC--CCcccCCCCCHHHHHHHHHHHHcCCCcEEEEEEEcCCCCeE
Q 019399 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRN--GRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPF 106 (341)
Q Consensus 29 ~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~~~ 106 (341)
.+++++|...++|.++++|+++++++|+++++++|++ ...+.++.........+...+..+..+..+.....++|..+
T Consensus 2 ~~i~i~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (110)
T 1byw_A 2 RKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQRRAAAQIAQALLGAEERKVEIAFYRKDGSCF 81 (110)
T ss_dssp CEEEEEETTSSSCBEEEECHHHHHHHTCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEECTTSCEE
T ss_pred CCEEEEeccCCCCcEEEECHHHHHHhCCCHHHHccCCCccccccCCcCCHHHHHHHHHHHhcCCCceEEEEEEcCCCCEE
Confidence 5788888732339999999999999999999999997 44455555555555667777777777888888889999999
Q ss_pred EEEEEEEEeecCCCCcEEEEEEEEecCchh
Q 019399 107 WMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136 (341)
Q Consensus 107 ~~~~~~~~~~~~~~g~~~~~~~~~~Dite~ 136 (341)
|+.+...|+.+ .+|.+.+++++++|||++
T Consensus 82 ~~~~~~~~~~~-~~g~~~~~~~~~~DiTe~ 110 (110)
T 1byw_A 82 LCLVDVVPVKN-EDGAVIMFILNFEVVMEK 110 (110)
T ss_dssp EEEEEEEEEEC-TTCCEEEEEEEEEEEEEC
T ss_pred EEEEEEEEeec-CCCCEEEEEEEEEeccCC
Confidence 99999999998 789999999999999974
No 41
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=99.45 E-value=4.4e-13 Score=97.81 Aligned_cols=116 Identities=9% Similarity=0.060 Sum_probs=93.4
Q ss_pred hhHHHHHHHHhhCCCeEEEEcCCCCCccEEEecHHHHHhcCCChhhhcCCC--CCcccCCCCCHHHHHHHHHHHHcCCCc
Q 019399 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRN--GRMFQGPRTNRRTIMEIREAIREERPI 92 (341)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (341)
+..++++.++++++.+++++|.+ +|.++++|+++++++|++++++.|.. +..+.++++.......+.. +..+...
T Consensus 8 ~~~~~~~~~~~~~~~~i~~~d~~--~~~i~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 84 (125)
T 3eeh_A 8 KSERRVRELTEATNDILWEFTAD--LSEVLVINSAYEDIWGRSVAKLRENPHDFLNGIHPEDRELMKDTMQS-LMDGESA 84 (125)
T ss_dssp --CHHHHHHHSCCCCEEEEEETT--SSCEEEECTHHHHHHSSCHHHHHHCGGGGGGGBCHHHHHHHHHHHHH-HHTTCCE
T ss_pred HHHHHHHHHHhcCCceEEEEEcC--CCcEEEecHHHHHHHCCCHHHHccCcHHHHHhcCHHHHHHHHHHHHH-HHcCCCc
Confidence 45567889999999999999986 47899999999999999999998876 3334444443333334444 5567777
Q ss_pred EEEEEEEcCCCCeEEEEEEEEEeecCCCCcEEEEEEEEecCc
Q 019399 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (341)
Q Consensus 93 ~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit 134 (341)
..+++...++|...|+.+...|+.+ .+|.+.+++++++|||
T Consensus 85 ~~e~~~~~~~g~~~~~~~~~~~~~~-~~g~~~~~~~~~~DIT 125 (125)
T 3eeh_A 85 DVECRVNATEEYQRWVWIQGEPITN-DAGETVRVAGFARDIT 125 (125)
T ss_dssp EEEEEECGGGTTCEEEEEEEEEEEC-TTSCEEEEEEEEEECC
T ss_pred cEEEEEEcCCCCEEEEEEecEEEEC-CCCCEEEEEEEEEecC
Confidence 8888888999999999999999998 8999999999999997
No 42
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=99.45 E-value=7.2e-14 Score=131.27 Aligned_cols=116 Identities=14% Similarity=0.106 Sum_probs=102.8
Q ss_pred HHHHHHhhCCCeEEEEcCCCCCccEEEecHHHHHhcCCChhhhcCCCCCcccCCCCCHHHHHHHHHHHHcCCCcEEEEEE
Q 019399 19 WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLN 98 (341)
Q Consensus 19 ~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 98 (341)
++..++++++++++++|.+ |+++++|+++++++||+.++.+|+......++.+.. ....+.+.+..+..+.+++++
T Consensus 519 ~~~~lle~a~~~i~~~D~~---grI~~~N~a~~~l~G~s~~e~~g~~~l~~~~~~~~~-~~~~i~~~l~~g~~~~~E~~~ 594 (635)
T 4eho_A 519 QASSQVHASMQPVLITDAE---GRILLMNDSFRDMLPAGSPSAVHLDDLAGFFVESND-FLRNVAELIDHGRGWRGEVLL 594 (635)
T ss_dssp SHHHHHHHCSSCCEEEETT---CCEEEECHHHHTTSCSSCCCCCSSGGGTTSSSSCTH-HHHHHHHHHHHCCCBCCCCEE
T ss_pred HHHHHHHhCCCcEEEECCC---CeEeeHHHHHHHHHCcChHHHcCcchhhccCCCCHH-HHHHHHHHHHcCCcEEEEEEE
Confidence 4567899999999999999 999999999999999999999998766565655544 455667778888888999999
Q ss_pred EcCCCCeEEEEEEEEEeecCCCCcEEEEEEEEecCchhhhc
Q 019399 99 YKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (341)
Q Consensus 99 ~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~Dite~k~~ 139 (341)
.++||+.+|+.++..|+++ .+|.++|++++++|||++|++
T Consensus 595 ~~~dG~~~~~~~~~~pv~d-~~G~v~g~v~i~~DITerK~a 634 (635)
T 4eho_A 595 RGAGNRPLPLAVRADPVTR-TEDQSLGFVLIFSDATDRRTA 634 (635)
T ss_dssp CCSSSSCEECCCCEEEECS-TTSSCCEEEECCCCCSSSCCC
T ss_pred EccCCcEEEEEEEEEEEEC-CCCCEEEEEEEEEeCchHhhC
Confidence 9999999999999999999 899999999999999999986
No 43
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=99.45 E-value=4e-12 Score=108.42 Aligned_cols=72 Identities=10% Similarity=0.011 Sum_probs=58.7
Q ss_pred eEEeCCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCChHHHHHHhhhhhccCcc---hhhhhcccccceeE
Q 019399 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHSN---RASMHRRIKAHFGI 328 (341)
Q Consensus 254 i~i~d~~~~d~~i~~~N~~~~~~~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~r~~~~~~~~ 328 (341)
+...+.+ |+++|+|+++..++||.++|++|+++..++||+|.....+.+.+.+..+.. ....||...++|..
T Consensus 177 itrh~~d---G~~~yvs~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~~~~~~f~s~~yR~~~kdG~~ 251 (317)
T 4dj3_A 177 TTTHTPG---CVFLEVDERAVPLLGYLPQDLIGTSILTYLHPEDRPLMVAIHQKVLKYAGHPPFEHSPVRFCTQNGEY 251 (317)
T ss_dssp EEEECTT---SBEEEECTTHHHHHSCCHHHHTTSBGGGGBCTTTTTHHHHHHHHHHHTTTSCCEECCCEEEECTTSCE
T ss_pred EEEecCC---CeEEEEChHHhhhcCcChHHHcCCCHHHeECHHHHHHHHHHHHHHHHcCCCccccceEEEEEccCCCE
Confidence 4445556 999999999999999999999999999999999999888888888876554 24567766666543
No 44
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=99.44 E-value=3.9e-13 Score=98.47 Aligned_cols=91 Identities=21% Similarity=0.251 Sum_probs=75.3
Q ss_pred hHHHHhhccCCceEEeCCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCChHHHHHHhhhhhccCcchhh---h
Q 019399 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHSNRAS---M 318 (341)
Q Consensus 242 ~~~~~~~~~~~~i~i~d~~~~d~~i~~~N~~~~~~~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~ 318 (341)
.+..++++++++|+++|.+ |+|+|+|++|++++||+++|++|+++..+.+++........+...+..+..+.. .
T Consensus 6 ~~~~~~~~~~~~i~~~d~~---g~i~~~N~a~~~~~G~~~~elig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 82 (120)
T 2gj3_A 6 IFRQTVEHAPIAISITDLK---ANILYANRAFRTITGYGSEEVLGKNESILSNGTTPRLVYQALWGRLAQKKPWSGVLVN 82 (120)
T ss_dssp HHHHHHHHCSSEEEEECTT---CBEEEECHHHHHHHCCCTTGGGGCBGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred HHHHHHHhCCCeEEEECCC---CCEEeehHHHHHHHCcCHHHHcCCCHHHcCCCCCCHHHHHHHHHHHHcCCCEEEEEEE
Confidence 4778999999999999999 999999999999999999999999999888877776667777777777766644 3
Q ss_pred hcccccceeEEEEEecc
Q 019399 319 HRRIKAHFGIFFTYHPS 335 (341)
Q Consensus 319 ~r~~~~~~~~~~~~~p~ 335 (341)
.+++|+..|+.+..+|.
T Consensus 83 ~~~dG~~~~~~~~~~pi 99 (120)
T 2gj3_A 83 RRKDKTLYLAELTVAPV 99 (120)
T ss_dssp ECTTSCEEEEEEEEEEE
T ss_pred EcCCCCEEEEEEEEEEE
Confidence 35666666777777664
No 45
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=99.43 E-value=1e-12 Score=101.60 Aligned_cols=123 Identities=20% Similarity=0.244 Sum_probs=83.8
Q ss_pred hhHHHHHHHHhhCCCeEEEEcCCCCCccEEEecHHHHHhcCCChhhhcCCCCCcccCCCCCHHHHHHHHHHHHcCCC---
Q 019399 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP--- 91 (341)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~--- 91 (341)
+..+.+..++++++++++++|.+ |.++++|+++++++|++.++++|+++..+.++.........+......+..
T Consensus 37 ~~~~~~~~~l~~~~~~i~~~d~~---g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (167)
T 1v9y_A 37 AADGIFFPALEQNMMGAVLINEN---DEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNREGGKARVE 113 (167)
T ss_dssp ---CCHHHHHHTCSSEEEEECTT---SBEEEECHHHHHHHSCCGGGTTTSBGGGGSCGGGTTTHHHHHHHHHC-------
T ss_pred hhhHHHHHHHHhCCCCEEEECCC---CcEEEECHHHHHHhCCCHHHHcCCChhhccCccccchHHHHHHHHhhcCCCccc
Confidence 34556788999999999999999 999999999999999999999999877766655444443444444433322
Q ss_pred -cEEEEEEEcCCCCeEEEEEEEEEeecCCCCcEEEEEEEEecCchhhhccccc
Q 019399 92 -IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (341)
Q Consensus 92 -~~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~Dite~k~~~~~~ 143 (341)
+..+......+|..+|+.+...|+. ..|... ++++++|||+++++++++
T Consensus 114 ~~~~~~~~~~~~g~~~~~~~~~~~~~--~~g~~~-~~~~~~DiT~~~~~e~~l 163 (167)
T 1v9y_A 114 GMSRELQLEKKDGSKIWTRFALSKVS--AEGKVY-YLALVRDASVEMAQKEQT 163 (167)
T ss_dssp ---CEEEEECTTSCEEEEEEEEEEEE--ETTEEE-EEEEEEC-----------
T ss_pred ccceEEEEEcCCCcEEEEEEEEEEEe--cCCCEE-EEEEEecCcHHHHHHHHH
Confidence 3456777889999999999999994 466664 899999999999875543
No 46
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=99.41 E-value=1.6e-12 Score=110.48 Aligned_cols=71 Identities=10% Similarity=-0.049 Sum_probs=57.4
Q ss_pred eEEeCCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCChHHHHHHhhhhhccCcc-hh-hhhccccccee
Q 019399 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHSN-RA-SMHRRIKAHFG 327 (341)
Q Consensus 254 i~i~d~~~~d~~i~~~N~~~~~~~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~-~~~r~~~~~~~ 327 (341)
+...+.+ |+++|+|+++..++||.++|++|+++..++||+|.....+.+.+.+..+.. +. ..||...++|.
T Consensus 168 itrh~~d---G~~~yvd~~~~~lLGY~peELig~s~~~~iHpdD~~~~~~~~~~~l~~~g~~~~~~~yR~~~kdG~ 240 (309)
T 3gdi_A 168 TTTHTPN---CLFQAVDERAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKILQAGGQPFDYSPIRFRTRNGE 240 (309)
T ss_dssp EEEECTT---CBEEEECTTHHHHHSCCHHHHTTSBHHHHBCTTSHHHHHHHHHHHHHTTTCCEEEEEEEEECTTSC
T ss_pred EEEecCC---CeEEEECcccccccCcCHHHHcCCCHHHhCCHHHHHHHHHHHHHHHhcCCceeeceEEEEEccCCC
Confidence 4445666 999999999999999999999999999999999998888888888875543 33 36776666553
No 47
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*
Probab=99.41 E-value=4.1e-12 Score=96.53 Aligned_cols=106 Identities=34% Similarity=0.562 Sum_probs=90.8
Q ss_pred HHHhhCCCeEEEEc---CCCCCccEEEecHHHHHhcCCChhhhcCCCCCcccCCCC-----------CHHHHHHHHHHHH
Q 019399 22 EALDELPDSFTITD---PSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT-----------NRRTIMEIREAIR 87 (341)
Q Consensus 22 ~~~~~~~~~i~~~d---~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~-----------~~~~~~~~~~~~~ 87 (341)
.++++. ++++++| .+ |+++++|+++++++||++++++|+++..+.++.. .......+...+.
T Consensus 30 ~~~~~~-~~i~~~d~~d~~---g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (149)
T 3d72_A 30 GPVDTS-VALILCDLKQKD---TPIVYASEAFLYMTGYSNAEVLGRNCRFLQSPDGMVKPKSTRKYVDSNTINTMRKAID 105 (149)
T ss_dssp CSCCTT-SCEEEEETTSTT---CCEEEECHHHHHHHCCCHHHHTTSCGGGGGSTTSCCCTTCCCSSSCHHHHHHHHHHHH
T ss_pred HhhcCC-ccEEEEeccCCC---CcEEEECHHHHHHHCcCHHHHcCCChhHhCCccccccccccccccChHHHHHHHHHHH
Confidence 355664 8999999 68 9999999999999999999999999877776653 5555666777777
Q ss_pred cCCCcEEEEEEEcCCCCeEEEEEEEEEeecCCCCcEEEEEEEEec
Q 019399 88 EERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVP 132 (341)
Q Consensus 88 ~~~~~~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~D 132 (341)
.+..+..+....+++|..+|+.++..|+.+ .+|.+.+++++++|
T Consensus 106 ~~~~~~~e~~~~~~dG~~~~~~~~~~~i~~-~~g~~~~~v~~~~D 149 (149)
T 3d72_A 106 RNAEVQVEVVNFKKNGQRFVNFLTMIPVRD-ETGEYRYSMGFQCE 149 (149)
T ss_dssp HTCCEEEEEEEECTTCCEEEEEEEEEEEEC-TTSSEEEEEEECCC
T ss_pred CCCceEEEEEEECCCCCEEEEEEEEEEEEc-CCCCEEEEEEEEeC
Confidence 888888888889999999999999999998 89999999998876
No 48
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=99.39 E-value=3.3e-12 Score=94.79 Aligned_cols=112 Identities=11% Similarity=0.072 Sum_probs=82.2
Q ss_pred HHHHHHHHhhCCCeEEEEcCCCCCccEEEecHHHHHhcCCChhhhcCCCCCcccCCCCCHHHHHHHHHHHHcCC------
Q 019399 17 TLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER------ 90 (341)
Q Consensus 17 ~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~------ 90 (341)
.+.+..++++++++++++|.+ |+|+++|+++++++||++++++|+++..+.++.........+......+.
T Consensus 6 ~~~l~~i~~~~~d~i~~~D~~---g~I~~~N~aa~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (129)
T 3mfx_A 6 LETIELFIQHLTEAMILVNAN---GFIRSCNQRSAELLDCPQVSLKGQDWRNFLTEHHQARYDNLLSHDVQLGTNCGQPV 82 (129)
T ss_dssp HHHHHHHHTTCSSEEEEEETT---SBEEEECHHHHHHTTSCHHHHTTSBGGGGBCTTCCGGGGCTTC----------CCS
T ss_pred HHHHHHHHhcCCceEEEECCC---CEEEeEhHHHHHHHCcCHHHHcCCcHHHHcChHhHHHHHHHHHHHHhcCccccccc
Confidence 345778999999999999999 99999999999999999999999998877776654332211111111111
Q ss_pred -CcEEEEEEEcCCCCeEEEEEEEEEeecCCCCcEEEEEEEEecCch
Q 019399 91 -PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVS 135 (341)
Q Consensus 91 -~~~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~Dite 135 (341)
....++...++||+.+|+.++++|+.+ +.. .++++++|+..
T Consensus 83 ~~~~~E~~~~rkdG~~~~velsis~i~~-~~~---~~v~~~~~~~~ 124 (129)
T 3mfx_A 83 QHPAQETTLICASGKAKDVELSISYIPG-HEP---MFVMVMHDLEH 124 (129)
T ss_dssp CEEEEEEEEECTTSCEEEEEEEEEEECS-SSC---EEEEEEEEC--
T ss_pred CCCceEEEEEcCCCCEEEEEEEEEEecC-CCc---EEEEEEechhh
Confidence 234688889999999999999999964 222 36788888754
No 49
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=99.36 E-value=7.7e-12 Score=102.88 Aligned_cols=110 Identities=15% Similarity=0.195 Sum_probs=84.7
Q ss_pred hHHHHHHHHhhCCCeEEEEcCCCCCccEEEecHHHHHhc------------CCChhhhcCCCCCcccCCCCCHHHHHHHH
Q 019399 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMS------------GFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83 (341)
Q Consensus 16 ~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~------------G~~~~e~~g~~~~~l~~~~~~~~~~~~~~ 83 (341)
...++..++++++.+++++|.+ |+|+|+|+++++++ ||++++++|+++..+.+. ......+.
T Consensus 20 e~~~l~~iLd~~~~~vii~D~~---g~I~~~N~a~~~ll~~~~~~~~~~l~G~~~~eliG~~~~~~~~~---~~~~~~~~ 93 (233)
T 3vol_A 20 HMARIKSALDNVSANVMIADND---LNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHKN---PAHQRHLL 93 (233)
T ss_dssp HHHHHHHHHTTSSSEEEEEETT---SBEEEECHHHHHHHHHTHHHHHTTCTTCCTTSCTTCBGGGGSSS---HHHHHHHH
T ss_pred HHHHHHHHHhcCCCcEEEECCC---CcEEEecHHHHHHHHHHHHHHHhhcCCCCHHHHcCCCHHHHcCC---HHHHHHHH
Confidence 3567788999999999999999 99999999999998 899999999987766542 22222222
Q ss_pred HHHHcCCCcEEEEEEEcCCCCeEEEEEEEEEeecCCCCcEEEEEEEEecCchhhhc
Q 019399 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (341)
Q Consensus 84 ~~~~~~~~~~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~Dite~k~~ 139 (341)
+.+ ...+..++. .+|. |+.++..|+.+ ++|.+.|++++++|||+++++
T Consensus 94 ~~~--~~~~~~~~~---~~g~--~~~~~~~Pi~d-~~G~~~g~v~~~~DITe~~~~ 141 (233)
T 3vol_A 94 ANL--TGVHKAELN---LGGR--RFSLDVVPVFN-DANERLGSAVQWTDRTEEHRA 141 (233)
T ss_dssp HTC--CSCEEEEEE---ETTE--EEEEEEEEEEC-TTCCEEEEEEEEEECHHHHHH
T ss_pred Hhc--ccceeEEEE---ECCE--EEEEEEEEEEC-CCCCEEEEEEEEehhhHHHHH
Confidence 221 123333332 3443 77899999998 899999999999999999996
No 50
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=99.34 E-value=1.2e-12 Score=94.34 Aligned_cols=84 Identities=11% Similarity=0.040 Sum_probs=60.8
Q ss_pred HhhccCCceEEeCCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCChHHHHHHhhhhhccCcchhhhh---ccc
Q 019399 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHSNRASMH---RRI 322 (341)
Q Consensus 246 ~~~~~~~~i~i~d~~~~d~~i~~~N~~~~~~~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---r~~ 322 (341)
+++++++.|+++|.+ |+|+|+|+++++++||+++|++|+++..++||++.+.....+.. .+......+ +++
T Consensus 4 lle~~~d~i~v~d~~---G~i~yvn~~~~~~lGy~~~el~G~~~~~~ihp~D~~~~~~~~~~---~~~~~~~e~r~~~kd 77 (111)
T 2vlg_A 4 PLQTKTDIHAVLASN---GRIIYISANSKLHLGYLQGEMIGSFLKTFLHEEDQFLVESYFYN---EHHLMPCTFRFIKKD 77 (111)
T ss_dssp -----CCEEEEECTT---SBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHHC---SCCSSCEEEEEECTT
T ss_pred hhhcCCCEEEEEcCC---CeEEEEChHHHHHhCCCHHHHcCCcHHHeECHhHHHHHHHHHhc---cCCCccEEEEEEcCC
Confidence 678889999999988 99999999999999999999999999999999998877665532 122122233 466
Q ss_pred ccceeEEEEEecc
Q 019399 323 KAHFGIFFTYHPS 335 (341)
Q Consensus 323 ~~~~~~~~~~~p~ 335 (341)
|+..|+.+..++.
T Consensus 78 G~~~wve~~~~~v 90 (111)
T 2vlg_A 78 HTIVWVEAAVEIV 90 (111)
T ss_dssp SCEEEEEEEEEEC
T ss_pred CCEEEEEEEEEEE
Confidence 6666666665554
No 51
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=99.33 E-value=2.4e-12 Score=95.90 Aligned_cols=91 Identities=29% Similarity=0.517 Sum_probs=70.1
Q ss_pred HHhhccCCceEEeCCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCChHHHHHHhhhhhccCcchhh---hhcc
Q 019399 245 ISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHSNRAS---MHRR 321 (341)
Q Consensus 245 ~~~~~~~~~i~i~d~~~~d~~i~~~N~~~~~~~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~r~ 321 (341)
.++++++++|+++|.+.++|+|+|+|++|++++||+++|++|+++..+.+|+........+...+..+..+.. .+++
T Consensus 3 ~~~~~~~~~i~~~d~~g~~~~i~~~N~a~~~~~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~k 82 (132)
T 2pr5_A 3 HMLDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEVDNIRTALQNKEPVTVQIQNYKK 82 (132)
T ss_dssp ---CCCCCEEEEECTTSTTCCEEEECHHHHHHHSCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECT
T ss_pred hHHhcCCCcEEEEeCCCCCCcEEEECHHHHHHhCcCHHHHcCCChhhhCCCCCCHHHHHHHHHHHHcCCCeEEEEEEEec
Confidence 3688899999999987223599999999999999999999999998888777777667777777776665544 3456
Q ss_pred cccceeEEEEEecc
Q 019399 322 IKAHFGIFFTYHPS 335 (341)
Q Consensus 322 ~~~~~~~~~~~~p~ 335 (341)
+|+..|+.+..+|.
T Consensus 83 dG~~~~~~~~~~~~ 96 (132)
T 2pr5_A 83 DGTMFWNELNIDPM 96 (132)
T ss_dssp TSCEEEEEEEEEEE
T ss_pred CCCeeeeEEEEEec
Confidence 67777777777664
No 52
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=99.33 E-value=2.6e-12 Score=94.09 Aligned_cols=88 Identities=9% Similarity=0.019 Sum_probs=69.8
Q ss_pred HHHhhccCCceEEeCCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCChHHHHHHhhhhhc-cCcchhhhhcc-
Q 019399 244 YISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKG-KHSNRASMHRR- 321 (341)
Q Consensus 244 ~~~~~~~~~~i~i~d~~~~d~~i~~~N~~~~~~~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~r~- 321 (341)
..+++++++.|++.|.+ |+|+|+|+++++++||+++|++|+++..++||++.......+..++. .+..+..++|.
T Consensus 5 ~ll~e~~~d~i~~~d~~---g~i~~~n~~~~~~~G~~~~el~g~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~~~e~r~~ 81 (121)
T 3f1p_B 5 GLNVCQPTRFISRHNIE---GIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFR 81 (121)
T ss_dssp ---CCCCCEEEEEECTT---SBEEEECTTHHHHHSCCGGGTTTSBGGGGBCTTTHHHHHHHHHHHTTSTTCCEEEEEEEE
T ss_pred cceecCCCceEEEECCC---ceEEEECcchhhhhCCChHHHcCCCHHHeECHHHHHHHHHHHHHHHhcCCCcccEEEEEE
Confidence 34788899999999999 99999999999999999999999999999999999998888888885 44445555554
Q ss_pred --cccceeEEEEEec
Q 019399 322 --IKAHFGIFFTYHP 334 (341)
Q Consensus 322 --~~~~~~~~~~~~p 334 (341)
+|...|+.+...|
T Consensus 82 ~~dG~~~w~~~~~~~ 96 (121)
T 3f1p_B 82 SKNQEWLWMRTSSFT 96 (121)
T ss_dssp CTTSCEEEEEEEEEE
T ss_pred ecCCCEEEEEEEEEE
Confidence 4444555555544
No 53
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=99.33 E-value=1.8e-12 Score=95.17 Aligned_cols=108 Identities=10% Similarity=0.081 Sum_probs=73.4
Q ss_pred hHHHHHHHHhhCCCeEEEEcCCCCCccEEEecHHHHHhcCCChhhhcCCCCCcccCCCCCHHHHHHHHHHHHcCCCcEEE
Q 019399 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVN 95 (341)
Q Consensus 16 ~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e 95 (341)
.+++++.++++++++++++|.+ |+++++|+++++++|+++++++|+++..+.++................+...
T Consensus 17 ~~~~~~~i~~~~~~~i~~~d~~---g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 90 (125)
T 3fc7_A 17 TRKKFESLVSDSPDGIVHLTTN---GTILSVNPSMAGRLGADPDTLVGQQLSAVMDSEAANQRLEAGKSAVENGTAT--- 90 (125)
T ss_dssp ---------CCSCCEEEEEETT---SBEEEECHHHHHHHTSCHHHHTTSBGGGSSCHHHHHHHHHHHHHHHHHTSCE---
T ss_pred HHHHHHHHHhcCCCeEEEEcCC---CeEEEECHHHHHHhCCCHHHHcCccHHHhCCHHHHHHHHHHHHHHhcCCCeE---
Confidence 5677889999999999999999 9999999999999999999999998777662221111122223444444432
Q ss_pred EEEEcCCCC-eEEEEEEEEEeecCCCCcEEEEEEEEecCc
Q 019399 96 LLNYKKDGT-PFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (341)
Q Consensus 96 ~~~~~~dg~-~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit 134 (341)
...+|. ..|+.+...|+.+ +|...+++++++|||
T Consensus 91 ---~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~~~~DIT 125 (125)
T 3fc7_A 91 ---RSEDAVGGRHYHNQYIPVDS--HRKSDTFQLVSRDIT 125 (125)
T ss_dssp ---EEEEEETTEEEEEEEEESST--TTTTTEEEEEEEECC
T ss_pred ---EeEcCCCcEEEEEEEEeEec--CCCeEEEEEEEecCC
Confidence 123344 6788999999876 566778999999997
No 54
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=99.29 E-value=6e-12 Score=91.70 Aligned_cols=92 Identities=12% Similarity=0.066 Sum_probs=65.5
Q ss_pred hchHHHHhhccCCceEEeCCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCChHHHHHHhhhhhccCcchhh--
Q 019399 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHSNRAS-- 317 (341)
Q Consensus 240 ~~~~~~~~~~~~~~i~i~d~~~~d~~i~~~N~~~~~~~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-- 317 (341)
...++.++++++++|+++|.+ |+|+++|+++++++||+++|++|+++..+.++.+.. ........+..+..+..
T Consensus 10 e~~~~~l~e~~~d~i~~~d~~---g~i~~vN~a~~~l~Gy~~~el~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~e~ 85 (117)
T 2r78_A 10 SNAYRALFEHAIDGIFIMDAE---GHYLDVNPAICSAIGYTRDEFLALDWGVLSRGVDSG-WAAASLARIVGGEPLREER 85 (117)
T ss_dssp HHHHHHHHHHCSSEEEEECTT---SBEEEECHHHHHHHCCCHHHHTTCBTTTTTTCSTTS-HHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHhcCCceEEEECCC---CCEEEecHHHHHHHCcCHHHHcCCCHHHhCCccchh-HHHHHHHHHHcCCcEEEEE
Confidence 345888999999999999998 999999999999999999999999887765443322 22233333444443333
Q ss_pred -hhcccccceeEEEEEecc
Q 019399 318 -MHRRIKAHFGIFFTYHPS 335 (341)
Q Consensus 318 -~~r~~~~~~~~~~~~~p~ 335 (341)
..+++|+..|+.+..+|.
T Consensus 86 ~~~~kdG~~~~v~~~~~~~ 104 (117)
T 2r78_A 86 TVWTRNGDQLTVELSAHLL 104 (117)
T ss_dssp EEECTTSCEEEEEEEEEEC
T ss_pred EEEecCCCEEEEEEEEEEe
Confidence 335666666776666553
No 55
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.29 E-value=4.6e-12 Score=111.10 Aligned_cols=108 Identities=8% Similarity=0.097 Sum_probs=94.8
Q ss_pred CCeEEEEcCCCCCccEEEecHHHHHhcCCChhhhcCCCCCcccCCCCCHHHHHHHHHHHHcCCCcEEEEEEEcCCCCeEE
Q 019399 28 PDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFW 107 (341)
Q Consensus 28 ~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~~~~ 107 (341)
...++..+.+ |+++++|+++..++||++++++|+++..+++|++.......+...+..|.....++++++++|.++|
T Consensus 251 ~~f~~~~~~d---g~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~~~l~~g~~~~~eyR~~~kdG~~vW 327 (361)
T 4f3l_A 251 EEFTSRHSLE---WKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHVDDLENLAKCHEHLMQYGKGKSCYYRFLTKGQQWIW 327 (361)
T ss_dssp CEEEEEECTT---SBEEEECTTSHHHHCCCHHHHTTSBGGGGBCHHHHHHHHHHHHHHHHHSEEECCCEEEECTTSEEEE
T ss_pred ceeEEEEcCC---ceEEEECChhhhhhCcCHHHHcCCCHHHeECHHHHHHHHHHHHHHHhCCCcceEEEEEEecCCCEEE
Confidence 3456667788 9999999999999999999999999888999888777777777888777766778999999999999
Q ss_pred EEEEEEEeecCC-CCcEEEEEEEEecCchhhhc
Q 019399 108 MLFKMSLVFGKE-DGRATHFVAVQVPIVSRKHM 139 (341)
Q Consensus 108 ~~~~~~~~~~~~-~g~~~~~~~~~~Dite~k~~ 139 (341)
+.....++.+ . +|.+.+++++.+|||+++..
T Consensus 328 v~~~~~~v~~-~~~g~~~~iv~~~~dITe~~~~ 359 (361)
T 4f3l_A 328 LQTHYYITYH-QWNSRPEFIVCTHTVVSYAEVR 359 (361)
T ss_dssp EEEEEEEEEC-TTTCCEEEEEEEEEECCHHHHH
T ss_pred EEEEEEEEEc-CCCCCeeEEEEEEEECChhHhh
Confidence 9999999998 5 79999999999999999864
No 56
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=99.29 E-value=5.5e-12 Score=93.64 Aligned_cols=90 Identities=20% Similarity=0.146 Sum_probs=68.2
Q ss_pred HHHHhhccCCceEEeCCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCChHHHHHHhhhhhccCcch------h
Q 019399 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHSNR------A 316 (341)
Q Consensus 243 ~~~~~~~~~~~i~i~d~~~~d~~i~~~N~~~~~~~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~------~ 316 (341)
+..++++++++|+++|.+ |+|+++|+++++++||+++|++|+++..+.++++.......+......+... .
T Consensus 18 ~~~l~~~~~d~i~~~d~~---g~i~~~N~a~~~l~Gy~~~eliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 94 (130)
T 1d06_A 18 LRSILDTVPDATVVSATD---GTIVSFNAAAVRQFGYAEEEVIGQNLRILMPEPYRHEHDGYLQRYMATGEKRIIGIDRV 94 (130)
T ss_dssp HHHHHTTCSSEEEEEETT---SBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHHHHHCCCSSTTSCEE
T ss_pred HHHHHhhCcCeEEEECCC---CeEEEEcHHHHHHHCCCHHHHcCCcHHHHCCchhHHHHHHHHHHHHhcCCccccCCeeE
Confidence 778999999999999998 9999999999999999999999999988887766554444444433322211 1
Q ss_pred -hhhcccccceeEEEEEecc
Q 019399 317 -SMHRRIKAHFGIFFTYHPS 335 (341)
Q Consensus 317 -~~~r~~~~~~~~~~~~~p~ 335 (341)
...+++|+..|+.+..+|.
T Consensus 95 ~~~~~kdG~~~~~~~~~~~~ 114 (130)
T 1d06_A 95 VSGQRKDGSTFPMKLAVGEM 114 (130)
T ss_dssp EEEECTTSCEEEEEEEEEEE
T ss_pred EEEEeCCCCEEEEEEEEEEE
Confidence 1356777777777776664
No 57
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=99.29 E-value=1.1e-11 Score=89.30 Aligned_cols=90 Identities=18% Similarity=0.173 Sum_probs=68.5
Q ss_pred HHHhhCCCeEEEEcCCCCCccEEEecHHHHHhcCCChhhhcCCCCCcccCCCCCHHHHHHHHHHHHcCCCcEEEEEEEcC
Q 019399 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKK 101 (341)
Q Consensus 22 ~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 101 (341)
.++++++++++++|.+ |+++|+|+++++++||++++++|+++..+.+|++.......+. ..+.....++++.++
T Consensus 3 ~lle~~~d~i~v~d~~---G~i~yvn~~~~~~lGy~~~el~G~~~~~~ihp~D~~~~~~~~~---~~~~~~~~e~r~~~k 76 (111)
T 2vlg_A 3 FPLQTKTDIHAVLASN---GRIIYISANSKLHLGYLQGEMIGSFLKTFLHEEDQFLVESYFY---NEHHLMPCTFRFIKK 76 (111)
T ss_dssp ------CCEEEEECTT---SBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHH---CSCCSSCEEEEEECT
T ss_pred chhhcCCCEEEEEcCC---CeEEEEChHHHHHhCCCHHHHcCCcHHHeECHhHHHHHHHHHh---ccCCCccEEEEEEcC
Confidence 4688999999999999 9999999999999999999999999888888877554433321 223334578889999
Q ss_pred CCCeEEEEEEEEEeec
Q 019399 102 DGTPFWMLFKMSLVFG 117 (341)
Q Consensus 102 dg~~~~~~~~~~~~~~ 117 (341)
||+.+|+.+++.++.+
T Consensus 77 dG~~~wve~~~~~v~~ 92 (111)
T 2vlg_A 77 DHTIVWVEAAVEIVTT 92 (111)
T ss_dssp TSCEEEEEEEEEEC--
T ss_pred CCCEEEEEEEEEEEec
Confidence 9999999999999987
No 58
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=99.28 E-value=4.7e-11 Score=90.93 Aligned_cols=117 Identities=13% Similarity=0.124 Sum_probs=89.7
Q ss_pred HHHHHHHHhhCCCeEEEEcCCCCCccEEEecHH---HHHhcCCChhhhcCCCCCcccCCCCCHHHHHHHHHHHHcCCCcE
Q 019399 17 TLWVHEALDELPDSFTITDPSISGHPIVFASRG---FLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIE 93 (341)
Q Consensus 17 ~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~---~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 93 (341)
..++..++++++.+++++|.+ |+++|+|++ +++++| ..++++|+++..+.++. .......+...+..+....
T Consensus 18 ~~~l~~IL~~~~~gI~~vD~~---g~I~~~N~a~~~~~~i~g-~~~~~iGr~v~~~~~~~-~~~~v~~i~~~l~~g~~~~ 92 (151)
T 2qkp_A 18 VEQANLILNHLPLEITFVNKD---DIFQYYNDSVPAAEMVFK-RTPSQVGRNVELCHPPK-VLDKVKKVFELLRNGQRDK 92 (151)
T ss_dssp HHHHHHHHHHSSSEEEEEETT---SBEEEECCCSCGGGCSSC-CCGGGTTSBGGGSSCHH-HHHHHHHHHHHHHTTSBSE
T ss_pred HHHHHHHHHhCCCceEEEcCC---CeEEEEeCCCchhhhhcC-CCHHHcCCCHHHhCCHH-HHHHHHHHHHHHHcCCccE
Confidence 456889999999999999999 999999999 999999 56789999977654322 1222344566667777665
Q ss_pred EEEEEEcCCCCeEEEEEEEEEeecCCCCcEEEEEEEEecCchhhhcc
Q 019399 94 VNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMR 140 (341)
Q Consensus 94 ~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~Dite~k~~~ 140 (341)
.+..... ++...++.++..|+++ ++|.+.|++.+++|||+.++.+
T Consensus 93 ~~~~~~~-~~~~~~v~v~~~Pi~d-~~G~~~G~vev~~Dit~l~~le 137 (151)
T 2qkp_A 93 VNMWFQS-ERLGKFVYVTYAAVRD-QAGDFQGVLEYVQDIKPFFELD 137 (151)
T ss_dssp EEEEEEE-TTTTEEEEEEEEEEEC-TTCCEEEEEEEEEECGGGGGGG
T ss_pred EEEEEec-CCCCeEEEEEEEEEEC-CCCCEEEEEEEEEECHHHHhhh
Confidence 5554432 3212467889999998 7899999999999999988863
No 59
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=99.27 E-value=1.2e-11 Score=90.21 Aligned_cols=106 Identities=14% Similarity=0.080 Sum_probs=82.8
Q ss_pred HHHHHHhhCCCeEEEEcCCCCCccEEEecHHHHHhcCCChhhhcCCCCCcccCCCCCHHHHHHHHHHHHcCCCcEEEEEE
Q 019399 19 WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLN 98 (341)
Q Consensus 19 ~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 98 (341)
..+.++++++++++++|.+ |+++++|+++++++|+++++++|+++..+.++.........+..++..+.....++..
T Consensus 13 ~~~~il~~~~~~i~~~D~~---g~i~~~N~a~~~l~g~~~~e~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (118)
T 3fg8_A 13 GRENLYFQGGLGFMALDED---LRIIYVNSGCLRHVRRSRDELLGRVVTEVLPETQGSYFDALCRKVLATGREQQTRVDS 89 (118)
T ss_dssp CCCCSSSCTTCEEEEECTT---CBEEEECHHHHHHHTCCHHHHTTSBHHHHCGGGTTSHHHHHHHHHHHHCCCEEEEEEC
T ss_pred hHHHHHhhCCceEEEECCC---CeEEEECHHHHHHhCCCHHHHcCCcHHHHcCccchHHHHHHHHHHHHcCCceEEEEEE
Confidence 3456899999999999999 9999999999999999999999998777666555555566677778888777664333
Q ss_pred EcCCCCeEEEEEEEEEeecCCCCcEEEEEEEEecCchh
Q 019399 99 YKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136 (341)
Q Consensus 99 ~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~Dite~ 136 (341)
...+| .|+.+...|+.+ +++++++|||++
T Consensus 90 ~~~~g--~~~~~~~~p~~~-------g~v~~~~DITer 118 (118)
T 3fg8_A 90 LYSPG--MTIEVTAAADSG-------ALVVHFRDVTAE 118 (118)
T ss_dssp SSSTT--CEEEEEEEEETT-------EEEEEEEECSCC
T ss_pred EcCCC--eEEEEEEEEcCC-------cEEEEEEeccCC
Confidence 33355 477788888743 378889999975
No 60
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.27 E-value=1e-11 Score=109.71 Aligned_cols=108 Identities=8% Similarity=0.019 Sum_probs=88.5
Q ss_pred CCeEEEEcCCCCCccEEEecHHHHHhcCCChhhhcCCCCCcccCCCCCHHHHHHHHHHHHcCCC-cEEEEEEEcCCCCeE
Q 019399 28 PDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP-IEVNLLNYKKDGTPF 106 (341)
Q Consensus 28 ~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~dg~~~ 106 (341)
...++..+.+ |+++|+|+++..++||+++|++|+++..+++|++.......+...+..+.. ...+++++++||.++
T Consensus 278 ~~fi~~~~~d---g~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~~~l~~~~~~~~~eyR~~~kdG~~v 354 (387)
T 4f3l_B 278 MEYVSRHAID---GKFVFVDQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQTREKITTNCYKFKIKDGSFI 354 (387)
T ss_dssp CEEEEEECTT---SBEEEECTHHHHHHCCCHHHHTTSBGGGTBCHHHHHHHHHHHHHHTTCSSCEECCCEEEECTTSCEE
T ss_pred ceEEEEECCC---CEEEEECCCcccccCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHhcCCCeeeEEEEEEccCCCEE
Confidence 3456677888 999999999999999999999999988888888777666666666655544 456899999999999
Q ss_pred EEEEEEEEeecCCCCcEEEEEEEEecCchhhh
Q 019399 107 WMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (341)
Q Consensus 107 ~~~~~~~~~~~~~~g~~~~~~~~~~Dite~k~ 138 (341)
|+.....++.++.+|.+.+++++.+|||++|.
T Consensus 355 Wv~~~~~~~~~~~~g~~~~ivg~~~dIT~Rk~ 386 (387)
T 4f3l_B 355 TLRSRWFSFMNPWTKEVEYIVSTNTVVLANVL 386 (387)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEECC----
T ss_pred EEEEEEEEEECCCCCCEEEEEEEEEEcchhhc
Confidence 99999999998338899999999999999875
No 61
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=99.27 E-value=9.7e-11 Score=85.77 Aligned_cols=106 Identities=16% Similarity=0.219 Sum_probs=77.5
Q ss_pred HHHHHHHHhhCCCeEEEEcCCCCCccEEEecHHHHHhcC------------CChhhhcCCCCCcccCCCCCHHHHHHHHH
Q 019399 17 TLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSG------------FSRAEIIGRNGRMFQGPRTNRRTIMEIRE 84 (341)
Q Consensus 17 ~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G------------~~~~e~~g~~~~~l~~~~~~~~~~~~~~~ 84 (341)
..+++.++++++++++++|.+ |+++++|+++++++| +++++++|++...+.+. ......+.+
T Consensus 4 ~~rl~~il~~~~~gviv~D~~---g~I~~~N~a~~~llg~~~~~i~~~~~g~~~~~~~G~~~~~~~~~---~~~~~~~~~ 77 (121)
T 4hi4_A 4 MARIASALDNVSANVMIADND---LNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHKN---PAHQRHLLA 77 (121)
T ss_dssp HHHHHHHHTTSSSEEEEEETT---CBEEEECHHHHHHHHHTHHHHHHHCTTCCGGGCTTCBGGGGCSS---HHHHHHHHH
T ss_pred HHHHHHHHhcCCccEEEEcCC---CeEEEecHHHHHHHHHHHHHHHHhcCCCChHHhcCCCHHHhcCC---HHHHHHHHh
Confidence 356889999999999999999 999999999999995 88899999987766532 122222222
Q ss_pred HHHcCCCcEEEEEEEcCCCCeEEEEEEEEEeecCCCCcEEEEEEEEecCchh
Q 019399 85 AIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136 (341)
Q Consensus 85 ~~~~~~~~~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~Dite~ 136 (341)
... ..+..++. .+|. ++.++..|+.+ .+|.+.|++++++|||++
T Consensus 78 ~~~--~~~~~~~~---~~~~--~~~~~~~pi~~-~~g~~~g~v~~~~DiTee 121 (121)
T 4hi4_A 78 NLT--GVHKAELN---LGGR--RFSLDVVPVFN-DANARLGSAVQWTDRTEE 121 (121)
T ss_dssp HCS--SCEEEEEE---ETTE--EEEEEEEEEEC-TTSCEEEEEEEEEECC--
T ss_pred CcC--CCcEEEEE---ECCE--EEEEEEEEEEC-CCCCEEEEEEEEEEecCC
Confidence 111 23333332 2443 56788999998 789999999999999974
No 62
>4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A*
Probab=99.26 E-value=1.1e-11 Score=97.09 Aligned_cols=93 Identities=26% Similarity=0.453 Sum_probs=79.2
Q ss_pred HHHHhhccCCceEEeCCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCChHHHHHHhhhhhccCcchhhh---h
Q 019399 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHSNRASM---H 319 (341)
Q Consensus 243 ~~~~~~~~~~~i~i~d~~~~d~~i~~~N~~~~~~~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 319 (341)
+..++++++++|+++|.+.+||+|+++|++|++++||++++++|+++..+.++++.......+...+..+..+... +
T Consensus 9 ~~~~~~~~~~~i~~~d~~~~~g~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 88 (176)
T 4hia_A 9 IRAVFDRSGVALTLVDMSLPEQPVVLANPPFLRMTGYTEGQILGFNCRFLQRGDENAQARADIRDALKLGRELQVVLRNY 88 (176)
T ss_dssp HHHHHHHCSSCCEEEETTSTTCCEEEECHHHHHHHTCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEE
T ss_pred HHHHHhcCCCcEEEEecCCCCCcEEEECHHHHHHHCcCHHHHcCCCcceeeCCCCCHHHHHHHHHHHHcCCceEEEEEEE
Confidence 7789999999999999876779999999999999999999999999999999988888888888888877766543 3
Q ss_pred cccccceeEEEEEecc
Q 019399 320 RRIKAHFGIFFTYHPS 335 (341)
Q Consensus 320 r~~~~~~~~~~~~~p~ 335 (341)
+++|...|+.+...|.
T Consensus 89 ~~dG~~~~~~~~~~pi 104 (176)
T 4hia_A 89 RANDEPFDNLLFLHPV 104 (176)
T ss_dssp CTTCCEEEEEEEEEEE
T ss_pred cCCCCEEEEEEEEEEe
Confidence 5566667777777765
No 63
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=99.24 E-value=5.9e-12 Score=93.40 Aligned_cols=90 Identities=8% Similarity=0.024 Sum_probs=66.3
Q ss_pred HHHHhhccCCceEEeCCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCChHHHHHHhhhhhccCc----c----
Q 019399 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHS----N---- 314 (341)
Q Consensus 243 ~~~~~~~~~~~i~i~d~~~~d~~i~~~N~~~~~~~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~----~---- 314 (341)
+..++++++++|+++|.+ |+|+++|+++++++||++++++|+++..++++++.......+......+. .
T Consensus 9 l~~i~~~~~d~i~~~D~~---g~I~~~N~aa~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (129)
T 3mfx_A 9 IELFIQHLTEAMILVNAN---GFIRSCNQRSAELLDCPQVSLKGQDWRNFLTEHHQARYDNLLSHDVQLGTNCGQPVQHP 85 (129)
T ss_dssp HHHHHTTCSSEEEEEETT---SBEEEECHHHHHHTTSCHHHHTTSBGGGGBCTTCCGGGGCTTC----------CCSCEE
T ss_pred HHHHHhcCCceEEEECCC---CEEEeEhHHHHHHHCcCHHHHcCCcHHHHcChHhHHHHHHHHHHHHhcCcccccccCCC
Confidence 778999999999999999 99999999999999999999999999998887765432222222211111 0
Q ss_pred -hhh-hhcccccceeEEEEEecc
Q 019399 315 -RAS-MHRRIKAHFGIFFTYHPS 335 (341)
Q Consensus 315 -~~~-~~r~~~~~~~~~~~~~p~ 335 (341)
... ..+++|+..|+.++++|.
T Consensus 86 ~~E~~~~rkdG~~~~velsis~i 108 (129)
T 3mfx_A 86 AQETTLICASGKAKDVELSISYI 108 (129)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEE
T ss_pred ceEEEEEcCCCCEEEEEEEEEEe
Confidence 111 346788888888887764
No 64
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=99.23 E-value=8.8e-12 Score=90.56 Aligned_cols=83 Identities=13% Similarity=0.053 Sum_probs=67.9
Q ss_pred cCCceEEeCCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCChHHHHHHhhhhhccCcchhhhhccc---ccce
Q 019399 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHSNRASMHRRI---KAHF 326 (341)
Q Consensus 250 ~~~~i~i~d~~~~d~~i~~~N~~~~~~~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~---~~~~ 326 (341)
+++.|++.|.+ |+++|+|+++++++||+++|++|+++..++||++.......+..++..+..+..++|.. |...
T Consensus 8 ~~~~i~~~d~~---g~i~~~n~~~~~~~Gy~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~~ 84 (117)
T 3f1p_A 8 SKTFLSEHSMD---MKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLAKHGGYV 84 (117)
T ss_dssp GGEEEEEECTT---CBEEEECTHHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHSEEECCCEEEECTTSSEE
T ss_pred CccEEEEECCC---ceEEEECcChhhhhCCCHHHHcCCchhheECHHHHHHHHHHHHHHHhCCCeeeeEEEEEecCCCEE
Confidence 35678889988 99999999999999999999999999999999999998888998888877766666544 4444
Q ss_pred eEEEEEecc
Q 019399 327 GIFFTYHPS 335 (341)
Q Consensus 327 ~~~~~~~p~ 335 (341)
|+.+...|.
T Consensus 85 w~~~~~~~~ 93 (117)
T 3f1p_A 85 WLETQGTVI 93 (117)
T ss_dssp EEEEEEEEE
T ss_pred EEEEeeEEE
Confidence 555555543
No 65
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=99.21 E-value=3.7e-11 Score=100.41 Aligned_cols=94 Identities=27% Similarity=0.379 Sum_probs=78.3
Q ss_pred HHHHhhccCCceEEeCCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCChHHHHHHhhhhhccCcchhhh---h
Q 019399 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHSNRASM---H 319 (341)
Q Consensus 243 ~~~~~~~~~~~i~i~d~~~~d~~i~~~N~~~~~~~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 319 (341)
+..++++++++|+++|....+|+|+++|++|++++||+++|++|+++..+.+|++.......+...+..+..+..+ +
T Consensus 65 ~~~i~~~~~~~i~~~d~~~~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~ 144 (258)
T 3p7n_A 65 VLDLIEASPIASVVSDPRLADNPLIAINQAFTDLTGYSEEECVGRNCRFLAGSGTEPWLTDKIRQGVREHKPVLVEILNY 144 (258)
T ss_dssp HHHHHHTCSSEEEEECTTSTTCCEEEECHHHHHHHCCCGGGTTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEE
T ss_pred HHHHHhcCCccEEEEcCCCCCCcEEEEhHHHHHHcCCCHHHHCCCChhhccCCCCchhHHHHHHHHHHcCCCeEEEEEEE
Confidence 7889999999999999921128999999999999999999999999999999998888888888888877766543 4
Q ss_pred cccccceeEEEEEecce
Q 019399 320 RRIKAHFGIFFTYHPSV 336 (341)
Q Consensus 320 r~~~~~~~~~~~~~p~~ 336 (341)
+++|...|+.+...|..
T Consensus 145 ~~dG~~~~~~~~~~pi~ 161 (258)
T 3p7n_A 145 KKDGTPFRNAVLVAPIY 161 (258)
T ss_dssp CTTSCEEEEEEEEEEEE
T ss_pred cCCCCEEEEeeEEEEEE
Confidence 56666777777777753
No 66
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=99.20 E-value=3.4e-11 Score=87.85 Aligned_cols=87 Identities=9% Similarity=0.069 Sum_probs=68.7
Q ss_pred HhhccCCceEEeCCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCChHHHHHHhhhhhccCcc-hhhhhc---c
Q 019399 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHSN-RASMHR---R 321 (341)
Q Consensus 246 ~~~~~~~~i~i~d~~~~d~~i~~~N~~~~~~~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~r---~ 321 (341)
++++++++|+++|.+ |+|+|+|+++++++||+++|++|+++..+++|++.......+...+..+.. ...++| +
T Consensus 8 ~~~~~~~~i~~~d~~---g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~~e~r~~~~ 84 (121)
T 2kdk_A 8 INVKPTEFITRFAVN---GKFVYVDQRATAILGYLPQELLGTSCYEYFHQDDHNNLTDKHKAVLQSKEKILTDSYKFRAK 84 (121)
T ss_dssp CCCCSSEEEEEECTT---SBEEEECTHHHHHTCCCTTTSBTSBTTTTBCSSSHHHHHHHHHHHHTSSSCEEEEEEEEECS
T ss_pred cccCCccEEEEECCC---eeEEEEChhHHHHHCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHhCCCCCccEEEEEEEc
Confidence 677888999999998 999999999999999999999999999999999988887777777765433 333444 4
Q ss_pred cccceeEEEEEecc
Q 019399 322 IKAHFGIFFTYHPS 335 (341)
Q Consensus 322 ~~~~~~~~~~~~p~ 335 (341)
+|...|+.+...|.
T Consensus 85 dG~~~~~~~~~~~~ 98 (121)
T 2kdk_A 85 DGSFVTLKSQWFSF 98 (121)
T ss_dssp SSCEEEEEEEEEEE
T ss_pred CCCEEEEEEEEEEE
Confidence 55555665555553
No 67
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Probab=99.18 E-value=6.4e-11 Score=85.00 Aligned_cols=90 Identities=33% Similarity=0.601 Sum_probs=70.4
Q ss_pred HhhccCCceEEeCCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCChHHHHHHhhhhhccCcchhhhh---ccc
Q 019399 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHSNRASMH---RRI 322 (341)
Q Consensus 246 ~~~~~~~~i~i~d~~~~d~~i~~~N~~~~~~~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---r~~ 322 (341)
++++++++++++|...++|+|+++|++|++++||++++++|+++..+.+++........+...+..+..+...+ +++
T Consensus 2 ~l~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (115)
T 4eet_B 2 SPEFIEKNFVITDPRLPDNPIIFASDGFLELTEYSREEILGRNARFLQGPETDQATVQKIRDAIRDQRETTVQLINYTKS 81 (115)
T ss_dssp ---CCCCSEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEECTT
T ss_pred ccccCCCcEEEEcCCCCCCcEEEEcHHHHHHHCcCHHHHhCCCHHHhcCCCCChHHHHHHHHHHHcCCCcceEEEEecCC
Confidence 46788999999999222399999999999999999999999999989888888888888888887776654433 455
Q ss_pred ccceeEEEEEecc
Q 019399 323 KAHFGIFFTYHPS 335 (341)
Q Consensus 323 ~~~~~~~~~~~p~ 335 (341)
|...|+.+...|.
T Consensus 82 g~~~~~~~~~~~~ 94 (115)
T 4eet_B 82 GKKFWNLLHLQPV 94 (115)
T ss_dssp CCEEEEEEEEEEE
T ss_pred CCEEEEEEEEEEE
Confidence 6666777776664
No 68
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.16 E-value=3.2e-10 Score=81.81 Aligned_cols=106 Identities=12% Similarity=0.122 Sum_probs=79.8
Q ss_pred HHHHHhhCCCeEEEEcCCCCCccEEEecHHHHHhcCCChhhhcCCCCCcccCCCCCHHHHHHHHHHHHcCCCc-EEEEEE
Q 019399 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI-EVNLLN 98 (341)
Q Consensus 20 ~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~ 98 (341)
...++++++++++++|.+ |+++++|+++++++|+++++++|+++..+.++... ....+.+.+..+... ..+..+
T Consensus 9 ~~~il~~~~~~i~~~D~~---g~I~~~N~aa~~l~g~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 83 (115)
T 3b33_A 9 PSAILNNMVTATLILDDG---LAIRYANPAAELLFSQSAKRIVEQSLSQLIQHASL--DLALLTQPLQSGQSITDSDVTF 83 (115)
T ss_dssp HHHHHHHCSSEEEEECTT---CBEEEECHHHHHHTTSCHHHHTTCBHHHHCSEEEC--CTHHHHHHHHHCCCEEEEEEEE
T ss_pred HHHHHhhcCceEEEECCC---CcEEEECHHHHHHhCCCHHHHhCCCHHHHhCccch--hhHHHHHHHHcCCcccCCceEE
Confidence 346899999999999999 99999999999999999999999986655443211 122344455555553 345555
Q ss_pred EcCCCCeEEEEEEEEEeecCCCCcEEEEEEEEecCc
Q 019399 99 YKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (341)
Q Consensus 99 ~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit 134 (341)
. ++|..+|+.++..|+.+ +|. .+++.+++||+
T Consensus 84 ~-~~g~~~~~~~~~~pi~~--~g~-~~~l~~~~Di~ 115 (115)
T 3b33_A 84 V-VDGRPLMLEVTVSPITW--QRQ-LMLLVEMRKID 115 (115)
T ss_dssp E-ETTEEEEEEEEEEEEEE--TTE-EEEEEEEEEC-
T ss_pred e-cCCCEEEEEEEEEEeec--CCc-eEEEEEEEeCC
Confidence 5 78888999999999975 454 57889999985
No 69
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=99.13 E-value=1.6e-10 Score=84.91 Aligned_cols=87 Identities=16% Similarity=0.025 Sum_probs=58.3
Q ss_pred HHHHhhccCCceEEeCCCCCCCCEEEecHHHHHHhCCCcccc--cCCccccccCCCChHHHHHHhhhhhccCc-chhh-h
Q 019399 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEV--VGQNCRFLNGVDTDTTVLYQSSTDKGKHS-NRAS-M 318 (341)
Q Consensus 243 ~~~~~~~~~~~i~i~d~~~~d~~i~~~N~~~~~~~Gy~~~e~--~G~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~-~ 318 (341)
+..++++++++|+++|.+ |+|+++|+++++++||+++|+ +|+++..+.+ +.......+......+. .+.. .
T Consensus 19 ~~~l~e~~~~~i~~~d~~---g~i~~~N~a~~~~~G~~~~el~g~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~e~~~ 93 (126)
T 3bwl_A 19 LEALFENSPDMIDVLDAD---GTICEVNQRFCAELGYDESEVLGRSIWEFDLMF--DAEDVQTQLSGFSVDERRKFEGLY 93 (126)
T ss_dssp HHHHHHHCSSEEEEECTT---CBEEEECHHHHHHHTCCGGGTTTSBGGGTBTTC--CHHHHHHHHHTCCTTCEEEEEEEE
T ss_pred HHHHHhhCCcEEEEEcCC---CCEEEEcHHHHHHhCCCHHHHhhCCCchhhccC--CHHHHHHHHHHHhcCCCcceEEEE
Confidence 667899999999999998 999999999999999999999 5677766665 33333333333322222 1111 2
Q ss_pred hcccccceeEEEEEec
Q 019399 319 HRRIKAHFGIFFTYHP 334 (341)
Q Consensus 319 ~r~~~~~~~~~~~~~p 334 (341)
.+++|...|+.+...|
T Consensus 94 ~~~dG~~~~~~~~~~~ 109 (126)
T 3bwl_A 94 ERRDGSTMSVEVHLLR 109 (126)
T ss_dssp ECTTSCEEEEEEEEEE
T ss_pred EeCCCCEEEEEEEeEE
Confidence 2455555565554433
No 70
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A*
Probab=99.13 E-value=1.3e-10 Score=89.73 Aligned_cols=95 Identities=36% Similarity=0.553 Sum_probs=77.3
Q ss_pred chHHHHhhccCCceEEeCCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCChHHHHHHhhhhhccCcchhhh--
Q 019399 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHSNRASM-- 318 (341)
Q Consensus 241 ~~~~~~~~~~~~~i~i~d~~~~d~~i~~~N~~~~~~~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-- 318 (341)
..+..++++++++|+++|...+||+|+++|++|++++||++++++|+++..+.++++.......+...+..+..+...
T Consensus 35 ~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 114 (166)
T 3ue6_A 35 YSLVKALQMAQQNFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRNCRFLQGPETDPRAVDKIRNAITKGVDTSVCLL 114 (166)
T ss_dssp CHHHHHHHHTTSCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHHTCCEEEEEE
T ss_pred HHHHHHHhcCCceEEEEEccCCCCcEEEECHHHHHHhCcCHHHHcCCCHhheeCCCCCHHHHHHHHHHHhcCCceEEEEE
Confidence 347889999999999999822239999999999999999999999999998988888888888888888777765443
Q ss_pred -hcccccceeEEEEEecc
Q 019399 319 -HRRIKAHFGIFFTYHPS 335 (341)
Q Consensus 319 -~r~~~~~~~~~~~~~p~ 335 (341)
.+++|...|+.+...|.
T Consensus 115 ~~~~~g~~~~~~~~~~~i 132 (166)
T 3ue6_A 115 NYRQDGTTFWNLFFVAGL 132 (166)
T ss_dssp EECTTSCEEEEEEEEEEE
T ss_pred EEcCCCCEEEEEEEEEee
Confidence 34566666777776664
No 71
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=99.12 E-value=7.7e-11 Score=85.83 Aligned_cols=83 Identities=20% Similarity=0.200 Sum_probs=60.1
Q ss_pred cCCceEEeCCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCChHHHHHHhhhhhccCcch------h-hhhccc
Q 019399 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHSNR------A-SMHRRI 322 (341)
Q Consensus 250 ~~~~i~i~d~~~~d~~i~~~N~~~~~~~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~------~-~~~r~~ 322 (341)
++++|+++|.+ |+|+++|+++++++||+++|++|+++..+.++++.......+......+... . ...+++
T Consensus 2 ~~d~i~~~d~~---g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 78 (119)
T 2vv6_A 2 IPDAMIVIDGH---GIIQLFSTAAERLFGWSELEAIGQNVNILMPEPDRSRHDSYISRYRTTSDPHIIGIGRIVTGKRRD 78 (119)
T ss_dssp CCCEEEEEETT---SBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHHHHHCCCSSTTTCEEEEEECTT
T ss_pred CcceEEEECCC---CeEEEEhHHHHHHhCCCHHHHcCCCHHHhCCchHHHHHHHHHHHHhcCCCcccCCCceEEEEEeCC
Confidence 57899999998 9999999999999999999999999988877665544333333333322211 1 134677
Q ss_pred ccceeEEEEEecc
Q 019399 323 KAHFGIFFTYHPS 335 (341)
Q Consensus 323 ~~~~~~~~~~~p~ 335 (341)
|+..|+.+..+|.
T Consensus 79 G~~~~~~~~~~~~ 91 (119)
T 2vv6_A 79 GTTFPMHLSIGEM 91 (119)
T ss_dssp SCEEEEEEEEEEE
T ss_pred CCEEEEEEEEEEE
Confidence 7777777776664
No 72
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}
Probab=99.11 E-value=1.6e-10 Score=85.01 Aligned_cols=90 Identities=32% Similarity=0.528 Sum_probs=71.9
Q ss_pred HhhccCCceEEeCCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCChHHHHHHhhhhhccCcchhhhh---ccc
Q 019399 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHSNRASMH---RRI 322 (341)
Q Consensus 246 ~~~~~~~~i~i~d~~~~d~~i~~~N~~~~~~~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---r~~ 322 (341)
++++++++|+++|.+.++|+|+++|++|++++||++++++|+++..+.++++.......+...+..+..+...+ +++
T Consensus 2 ~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 81 (128)
T 3t50_A 2 ASEFTLMPMLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPIDIDIINYKKS 81 (128)
T ss_dssp CCCCCSSCEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEECTT
T ss_pred ccccCcccEEEecCCCCCCcEEEEcHHHHHHhCcCHHHHcCCCHhhhcCCccCHHHHHHHHHHHHcCCCceeEEEEEcCC
Confidence 46788999999999211299999999999999999999999999999888888888888888888777655433 345
Q ss_pred ccceeEEEEEecc
Q 019399 323 KAHFGIFFTYHPS 335 (341)
Q Consensus 323 ~~~~~~~~~~~p~ 335 (341)
|...|+.+...|.
T Consensus 82 g~~~~~~~~~~~i 94 (128)
T 3t50_A 82 GEAFWNRLHISPV 94 (128)
T ss_dssp CCEEEEEEEEEEE
T ss_pred CCEEEEEEEEEEE
Confidence 5566776676664
No 73
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=99.10 E-value=5.6e-11 Score=86.68 Aligned_cols=89 Identities=13% Similarity=0.066 Sum_probs=65.4
Q ss_pred HHHHhhccCCceEEeCCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCCh-HHHHHHhhhhhccCcchhhh---
Q 019399 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD-TTVLYQSSTDKGKHSNRASM--- 318 (341)
Q Consensus 243 ~~~~~~~~~~~i~i~d~~~~d~~i~~~N~~~~~~~Gy~~~e~~G~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~--- 318 (341)
++.++++++++|++ +.+ |+|+++|++|++|+||++++++|+++..+.+++.. ......+...+..+..+..+
T Consensus 5 ~~~~~~~~~~~i~~-~~~---g~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 80 (120)
T 3mqq_A 5 YKTAFHLAPIGLVL-SRD---RVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRIM 80 (120)
T ss_dssp HHHHHHHCSSEEEE-EET---TEEEEECHHHHHHTTSCHHHHTTCBGGGGSSSHHHHHHHHHHHHHHHHHHSCEEEEEEE
T ss_pred HHHHHhcCCceEEE-ecC---CEEHHHHHHHHHHhCcCHHHhCCCchhhccCChhhHHHHHHHHHHHHhcCCcceEEEEE
Confidence 77899999999965 556 99999999999999999999999998877655433 34455555655555554443
Q ss_pred hcccccceeEEEEEecc
Q 019399 319 HRRIKAHFGIFFTYHPS 335 (341)
Q Consensus 319 ~r~~~~~~~~~~~~~p~ 335 (341)
.+++|...|+.+...|.
T Consensus 81 ~~~dG~~~~~~~~~~~~ 97 (120)
T 3mqq_A 81 KRAGGELFWCHVTGRAL 97 (120)
T ss_dssp ECTTSCEEEEEEEEEES
T ss_pred EeCCCCEEEEEEEEEEC
Confidence 34666666766666553
No 74
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=99.08 E-value=3.1e-10 Score=81.24 Aligned_cols=90 Identities=10% Similarity=0.049 Sum_probs=68.8
Q ss_pred hHHHHhhccCCceEEeCCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCChHHHHHHhhhhhccCcchhh---h
Q 019399 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHSNRAS---M 318 (341)
Q Consensus 242 ~~~~~~~~~~~~i~i~d~~~~d~~i~~~N~~~~~~~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~ 318 (341)
.+..++++++++++++|.+ |+|+++|+++++++||++++++|+++..+. |++.......+..++.++..... .
T Consensus 4 ~~~~~~~~~~~~i~~~d~~---g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (114)
T 3luq_A 4 RLRLFTEHAPAALAMFDRE---MRYLAVSRRWREDYGLGDGDILGMSHYDIF-PEIGEEWKSVHRRGLAGEVIRVEEDCF 79 (114)
T ss_dssp HHHHHHHTCSSEEEEEETT---CBEEEECHHHHHHTTCCSSCCTTCBHHHHC-TTCCHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred HHHHHHhcCCceEEEEcCC---cEEEEECHHHHHHHCCCHHHHcCCcHHHHC-CccHHHHHHHHHHHhcCCcceeeeeEE
Confidence 3778999999999999998 999999999999999999999999998887 66666666666666664443322 2
Q ss_pred hcccccceeEEEEEecc
Q 019399 319 HRRIKAHFGIFFTYHPS 335 (341)
Q Consensus 319 ~r~~~~~~~~~~~~~p~ 335 (341)
.+++|...|+.+...|.
T Consensus 80 ~~~~g~~~~~~~~~~p~ 96 (114)
T 3luq_A 80 VRADGRTQWLRWEVRPW 96 (114)
T ss_dssp EC--CCEEEEEEEEEEE
T ss_pred EcCCCcEEEEEEEEEEe
Confidence 34556666776666665
No 75
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=99.06 E-value=1.6e-09 Score=95.08 Aligned_cols=115 Identities=18% Similarity=0.269 Sum_probs=91.4
Q ss_pred hHHHHHHHHhhCCCeEEEEcCCCCCccEEEecHHHHHhcCCChhhhcCCCCCcccCCCCCHHHHHHHHHHHHcCCCcEEE
Q 019399 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVN 95 (341)
Q Consensus 16 ~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e 95 (341)
....+..++++++++++++|.+ |+++++|++ ++++ ++.++++|+++..+.++. .......+...+..+.....+
T Consensus 237 ~~~~l~~IL~~l~dgIivvD~~---g~I~~~N~a-e~i~-~~~~e~iGr~v~~~~p~~-~~~~~~~l~~~l~~g~~~~~~ 310 (369)
T 3cax_A 237 NIEELKAIFEALPVDVTFIDKD---DRVRFFSPG-ERIF-TRTPSVLGRPVQLCHPPK-SVYVVNKILKAFKEGRKKEAT 310 (369)
T ss_dssp CHHHHHHHHHHSSSEEEEECTT---SBEEEECCS-SCSS-CCCGGGTTCBTTTSSCGG-GHHHHHHHHHHHHHTSCSCEE
T ss_pred hHHHHHHHHHhCCCcEEEECCC---CcEEEEcCH-HHcc-CChHHHcCCcHHHHCChh-hHHHHHHHHHHHHcCCceEEE
Confidence 4567889999999999999999 999999999 9999 888999999987765432 223334456666777665555
Q ss_pred EEEEcCCCCeEEEEEEEEEeecCCCCcEEEEEEEEecCchhhhcc
Q 019399 96 LLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMR 140 (341)
Q Consensus 96 ~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~Dite~k~~~ 140 (341)
.... .+| .++.++..|+++ .+|.+.|++.+++|||+.++.+
T Consensus 311 ~~~~-~~g--~~v~v~~~PI~d-~~G~~~G~v~v~~DITe~~~le 351 (369)
T 3cax_A 311 FWLR-LRE--KYVYIKYVPLFN-EKGEYIGTLEMTMDIAPYKKIE 351 (369)
T ss_dssp EEEE-ETT--EEEEEEEEEEEC-TTSCEEEEEEEEEECHHHHTCC
T ss_pred EEEe-eCC--EEEEEEEEEEEC-CCCCEEEEEEEEEcCHHHHHHH
Confidence 4433 345 478889999998 8999999999999999998874
No 76
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=99.04 E-value=1.4e-10 Score=101.34 Aligned_cols=118 Identities=8% Similarity=0.075 Sum_probs=85.4
Q ss_pred hhHHHHHHHHhhCCCeEEEEcCCCCCccEEEecHHHHHhcCCChhhhcCCCCCcccCCCCCHHHHHHHHHHHHcCCCcEE
Q 019399 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94 (341)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (341)
++.++++.++++++++++++|.+ |+++++|+++++++||++++++|+++..+.++ ..........+..+.....
T Consensus 5 ~~~~~~~~i~~~~~~~i~~~d~~---g~i~~~N~a~~~l~G~~~~e~~G~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 78 (349)
T 3a0r_A 5 HLRNFSESILESLETAIITLSKD---GRITEWNKKAEQLFGLKKENVLGRRLKDLPDF---EEIGSVAESVFENKEPVFL 78 (349)
T ss_dssp ----CCCSSGGGSSSEEEEEESS---SBCSCBCHHHHHHHSCCSTTTTTCBSTTSTTT---THHHHHHHHHHHHCCCCEE
T ss_pred HHHHHHHHHHhhhcCeEEEECCC---CCEEeeHHHHHHHhCCCHHHHcCcCHHHCcCh---hHHHHHHHHHHhcCCceee
Confidence 33455677899999999999999 99999999999999999999999987776322 2233344445555554433
Q ss_pred EEEEEcCCCCeEEEEEEEEEeecCCCCcE-EEEEEEEecCchhhhccccc
Q 019399 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRA-THFVAVQVPIVSRKHMRNSG 143 (341)
Q Consensus 95 e~~~~~~dg~~~~~~~~~~~~~~~~~g~~-~~~~~~~~Dite~k~~~~~~ 143 (341)
.. ..+...|+.+...|+.+ ..|.. .+++++++|||+++++++++
T Consensus 79 ~~----~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~DiTe~~~~e~~~ 123 (349)
T 3a0r_A 79 NF----YKFGERYFNIRFSPFRN-AKTQLLEGVIITIDDVTELYKYEEER 123 (349)
T ss_dssp EC----CCBTTBCCEEEEEEECC-TTTTSSCEEEEEEECCSTTTTTTTTT
T ss_pred cc----cccCceEEEEEEEEEEc-CCCceeeEEEEEEEechHHHHHHHHH
Confidence 21 22233577888999987 66654 58999999999999975443
No 77
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.02 E-value=4.4e-10 Score=97.47 Aligned_cols=91 Identities=35% Similarity=0.665 Sum_probs=74.5
Q ss_pred HHhhccCCceEEeCCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCChHHHHHHhhhhhccCcchhhhh---cc
Q 019399 245 ISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHSNRASMH---RR 321 (341)
Q Consensus 245 ~~~~~~~~~i~i~d~~~~d~~i~~~N~~~~~~~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---r~ 321 (341)
.++++++++|+++|.+.++|+|+++|++|++++||+++|++|+++..+.+|++.......+...+..+..+..++ ++
T Consensus 15 ~~~~~~~~~i~~~D~~~~~g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 94 (332)
T 2wkq_A 15 TTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNARFLQGPETDRATVRKIRDAIDNQTEVTVQLINYTK 94 (332)
T ss_dssp CCGGGCCSEEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEECT
T ss_pred hHhhcCCCcEEEecCCCCCCCEEEeehHHHHHhCCCHHHHcCCCchhhcCCCCCHHHHHHHHHHHHcCCeeEEEEEEEcC
Confidence 367889999999999222399999999999999999999999999999988888888888888888887765543 45
Q ss_pred cccceeEEEEEecc
Q 019399 322 IKAHFGIFFTYHPS 335 (341)
Q Consensus 322 ~~~~~~~~~~~~p~ 335 (341)
+|...|+.+...|.
T Consensus 95 dG~~~~~~~~~~pi 108 (332)
T 2wkq_A 95 SGKKFWNLFHLQPM 108 (332)
T ss_dssp TCCEEEEEEEEEEE
T ss_pred CCCEEEEeeEEEEe
Confidence 56666777666664
No 78
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=99.01 E-value=1.7e-09 Score=93.24 Aligned_cols=108 Identities=9% Similarity=0.037 Sum_probs=92.1
Q ss_pred CCeEEEEcCCCCCccEEEecHHHHHhcCCChhhhcCCCCCcccCCCCCHHHHHHHHHHHHcCCC-----cEEEEEEEcCC
Q 019399 28 PDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP-----IEVNLLNYKKD 102 (341)
Q Consensus 28 ~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~e~~~~~~d 102 (341)
.+.++..+.+ |.++|+|+++..++||.++|++|+++..+++|++.......+...+..|.. ...+++++++|
T Consensus 154 ~~fi~r~~~d---G~~~yvn~~~~~lLGY~peELiG~s~~~~vHPdD~~~~~~~~~~~l~~G~~~~~~~~s~~yR~~~kd 230 (339)
T 3rty_A 154 PKFAIRHTAT---GIISHVDSAAVSALGYLPQDLIGRSIMDFYHHEDLSVMKETYETVMKKGQTAGASFCSKPYRFLIQN 230 (339)
T ss_dssp CEEEEEEETT---CBEEEECTTHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHTTSTTCCCBCCCEEEECTT
T ss_pred ceEEEEECCC---CeEEEcChhhhcccCCCHHHHcCCcHHHEECHHHHHHHHHHHHHHHHcCCcccccccceEEEEEccC
Confidence 5567788899 999999999999999999999999988999998877777777777776654 35688999999
Q ss_pred CCeEEEEEEEEEeecCCCCcEEEEEEEEecCchhhh
Q 019399 103 GTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (341)
Q Consensus 103 g~~~~~~~~~~~~~~~~~g~~~~~~~~~~Dite~k~ 138 (341)
|.++|+.....++.++.++.+.+++++.+.++....
T Consensus 231 G~~vWlet~~~~~~np~s~~~~~II~~h~vi~~p~~ 266 (339)
T 3rty_A 231 GCYVLLETEWTSFVNPWSRKLEFVVGHHRVFQGPKQ 266 (339)
T ss_dssp SCEEEEEEEEEEEECTTTCSEEEEEEEEEEEECCSS
T ss_pred CCEEEEEEEEEEEECCCCCCeeEEEEEEEECCCCCC
Confidence 999999999999998446778888999888887654
No 79
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=99.00 E-value=2.5e-10 Score=83.10 Aligned_cols=89 Identities=10% Similarity=0.022 Sum_probs=68.2
Q ss_pred HHHHhhccCCceEEeCCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCChHHHHHHhhhhhccCcchhh--hhc
Q 019399 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHSNRAS--MHR 320 (341)
Q Consensus 243 ~~~~~~~~~~~i~i~d~~~~d~~i~~~N~~~~~~~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~r 320 (341)
.+.++++++++|+++|.+ |+|+++|+++++++||++++++|+++..+.++.........+.+++..+..... ..+
T Consensus 14 ~~~il~~~~~~i~~~D~~---g~i~~~N~a~~~l~g~~~~e~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (118)
T 3fg8_A 14 RENLYFQGGLGFMALDED---LRIIYVNSGCLRHVRRSRDELLGRVVTEVLPETQGSYFDALCRKVLATGREQQTRVDSL 90 (118)
T ss_dssp CCCSSSCTTCEEEEECTT---CBEEEECHHHHHHHTCCHHHHTTSBHHHHCGGGTTSHHHHHHHHHHHHCCCEEEEEECS
T ss_pred HHHHHhhCCceEEEECCC---CeEEEECHHHHHHhCCCHHHHcCCcHHHHcCccchHHHHHHHHHHHHcCCceEEEEEEE
Confidence 344788999999999998 999999999999999999999999998888766666666777788776665433 121
Q ss_pred ccccceeEEEEEecc
Q 019399 321 RIKAHFGIFFTYHPS 335 (341)
Q Consensus 321 ~~~~~~~~~~~~~p~ 335 (341)
.. ...|+.+...|.
T Consensus 91 ~~-~g~~~~~~~~p~ 104 (118)
T 3fg8_A 91 YS-PGMTIEVTAAAD 104 (118)
T ss_dssp SS-TTCEEEEEEEEE
T ss_pred cC-CCeEEEEEEEEc
Confidence 11 335666666654
No 80
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=99.00 E-value=3e-10 Score=86.43 Aligned_cols=68 Identities=15% Similarity=0.099 Sum_probs=60.2
Q ss_pred HHHHhhccCCceEEeCCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCChHHHHHHhhhhhccCcc
Q 019399 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHSN 314 (341)
Q Consensus 243 ~~~~~~~~~~~i~i~d~~~~d~~i~~~N~~~~~~~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 314 (341)
+..+++++++||+++|.+ |+|+++|+++++++|+++++++|+++.+++++ ........++.++..+.+
T Consensus 24 l~~il~~~~~gi~v~D~~---g~I~~~N~a~~~~~G~~~~eviG~~~~~~~p~-~~~~~~~~l~~vl~~G~~ 91 (152)
T 3mxq_A 24 LSELLDQLSFALCIVRND---YVIVKVNEYFESRVIFDGETMQGKNILELFPE-SADYLKRKIDTALVIESS 91 (152)
T ss_dssp HHHHHHHHCCEEEEEETT---SBEEEECHHHHHTSSSCHHHHTTSBHHHHSGG-GHHHHHHHHHHHHHHTSC
T ss_pred HHHHHhcCCCCEEEEcCC---CEEEEECHHHHHHHCcCHHHHCCCCHHHhcCC-hHHHHHHHHHHHHhcCCc
Confidence 577899999999999999 99999999999999999999999999998876 666666778888887664
No 81
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=98.97 E-value=1.5e-09 Score=81.66 Aligned_cols=85 Identities=15% Similarity=0.146 Sum_probs=70.4
Q ss_pred chHHHHhhccCCceEEeCCCCCCCCEEEecHHHHHHhCCCcccccCC--ccccccCCCChHHHHHHhhhhhccCcchhhh
Q 019399 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQ--NCRFLNGVDTDTTVLYQSSTDKGKHSNRASM 318 (341)
Q Consensus 241 ~~~~~~~~~~~~~i~i~d~~~~d~~i~~~N~~~~~~~Gy~~~e~~G~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (341)
..+..+++.++.+++.+|.+ +.++++|+++++++||+++++.+. .+..++||++...+...+..++.++..+..+
T Consensus 9 ~rl~~~~~~~~~g~w~~d~~---~~~~~~s~~~~~~~G~~~~~~~~~~~~~~~~ihpdD~~~~~~~~~~~~~~~~~~~~e 85 (142)
T 3mr0_A 9 ERFQLAVSGASAGLWDWNPK---TGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDTYDVE 85 (142)
T ss_dssp CCHHHHHHHTTCEEEEECTT---TCCEEECHHHHHHTTCCGGGSCSEEC---CCBCTTTHHHHHHHHHHHHHHCCCEEEE
T ss_pred HHHHHHHHhCCcEEEEEEcC---CCeEEECHHHHHHhCCCccccCCCHHHHHhhcCHHHHHHHHHHHHHHHhCCCceEEE
Confidence 44888999999999999998 899999999999999999998874 4567899999999999999999888777777
Q ss_pred hcccccceeE
Q 019399 319 HRRIKAHFGI 328 (341)
Q Consensus 319 ~r~~~~~~~~ 328 (341)
||...++|..
T Consensus 86 ~r~~~~~G~~ 95 (142)
T 3mr0_A 86 YRVRTRSGDF 95 (142)
T ss_dssp EEEECTTSCE
T ss_pred EEEECCCCCE
Confidence 7665555543
No 82
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*
Probab=98.97 E-value=8.8e-10 Score=83.42 Aligned_cols=89 Identities=31% Similarity=0.545 Sum_probs=66.2
Q ss_pred HhhccCCceEEeCCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCC-----------hHHHHHHhhhhhccCcc
Q 019399 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDT-----------DTTVLYQSSTDKGKHSN 314 (341)
Q Consensus 246 ~~~~~~~~i~i~d~~~~d~~i~~~N~~~~~~~Gy~~~e~~G~~~~~l~~~~~-----------~~~~~~~~~~~~~~~~~ 314 (341)
++++. ++|+++|...++|+|+++|+++++++||+++|++|+++..+.+++. .......+...+..+..
T Consensus 31 ~~~~~-~~i~~~d~~d~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (149)
T 3d72_A 31 PVDTS-VALILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNCRFLQSPDGMVKPKSTRKYVDSNTINTMRKAIDRNAE 109 (149)
T ss_dssp SCCTT-SCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGGSTTSCCCTTCCCSSSCHHHHHHHHHHHHHTCC
T ss_pred hhcCC-ccEEEEeccCCCCcEEEECHHHHHHHCcCHHHHcCCChhHhCCccccccccccccccChHHHHHHHHHHHCCCc
Confidence 44443 8999998422239999999999999999999999999988887774 66667777777776665
Q ss_pred hhhhh---cccccceeEEEEEecc
Q 019399 315 RASMH---RRIKAHFGIFFTYHPS 335 (341)
Q Consensus 315 ~~~~~---r~~~~~~~~~~~~~p~ 335 (341)
+..++ +++|...|+.+..+|.
T Consensus 110 ~~~e~~~~~~dG~~~~~~~~~~~i 133 (149)
T 3d72_A 110 VQVEVVNFKKNGQRFVNFLTMIPV 133 (149)
T ss_dssp EEEEEEEECTTCCEEEEEEEEEEE
T ss_pred eEEEEEEECCCCCEEEEEEEEEEE
Confidence 54433 4556666777766664
No 83
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=98.96 E-value=1.1e-09 Score=79.63 Aligned_cols=91 Identities=10% Similarity=-0.134 Sum_probs=66.8
Q ss_pred hHHHHhhccCCceEEeCCCCCCCCEEEecHHHHHHhCCCcccccC--CccccccCCCChHHHHHHhhhhhccCcchhhhh
Q 019399 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVG--QNCRFLNGVDTDTTVLYQSSTDKGKHSNRASMH 319 (341)
Q Consensus 242 ~~~~~~~~~~~~i~i~d~~~~d~~i~~~N~~~~~~~Gy~~~e~~G--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (341)
.+..++++++.+++++|.+ +.++++|+++++++||++++++| ..+..+++|++.......+..++.++..+..++
T Consensus 8 ~l~~~~~~~~~~i~~~d~~---~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~e~ 84 (125)
T 3nja_A 8 LLHTAESDAGIGSWVLHME---SGRLEWSQAVHDIFGTDSATFDATEDAYFQRVHPDDRARVRRELDRHVLGDRPFDVEY 84 (125)
T ss_dssp ---------CCEEEEEETT---TTEEEECHHHHHHHTCCTTTCCCBHHHHHHHBCTTTHHHHHHHHHHHHHSCCCEEEEE
T ss_pred HHHHHHHhCCeeEEEEEcC---CCcEEECHHHHHHhCCCcccccccHHHHHhhcChhHHHHHHHHHHHHHhcCCCceEEE
Confidence 4777899999999999999 99999999999999999999999 556778899999988888988888887765555
Q ss_pred cc---cccceeEEEEEecc
Q 019399 320 RR---IKAHFGIFFTYHPS 335 (341)
Q Consensus 320 r~---~~~~~~~~~~~~p~ 335 (341)
+. +|...|+.+...|.
T Consensus 85 ~~~~~~g~~~~~~~~~~~~ 103 (125)
T 3nja_A 85 RIVRPDGQVRELLERNHIQ 103 (125)
T ss_dssp EEECTTSCEEEEEEEEEEE
T ss_pred EEECCCCCEEEEEEeeEEE
Confidence 54 44445665555553
No 84
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=98.96 E-value=7.4e-10 Score=79.86 Aligned_cols=103 Identities=16% Similarity=0.154 Sum_probs=72.7
Q ss_pred hCCCeEEEEcCCCCCccEEEecHHHHHhcCCChhhhcCCCCCcccCCCCCHHHHHHHHH-HHHc-CCCc---EEEEEEEc
Q 019399 26 ELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIRE-AIRE-ERPI---EVNLLNYK 100 (341)
Q Consensus 26 ~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~-~~~~-~~~~---~~e~~~~~ 100 (341)
+.+++++++|.+ +|+|+++|+++++++||++++++|+++..+.++..... ...+.. .... +... ..+....+
T Consensus 6 ~~~~~i~~~d~~--~g~I~~~N~aa~~l~G~~~~el~g~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (114)
T 1ll8_A 6 EFNKAIFTVDAK--TTEILVANDKACGLLGYSSQDLIGQKLTQFFLRSDSDV-VEALSEEHMEADGHAAVVFGTVVDIIS 82 (114)
T ss_dssp TTTCEEEEEETT--TCBEEEECTTHHHHHTCCTTTTTTSBGGGGSSCTTTHH-HHHTTSSTTSSSSCSSCCCSSSEEECC
T ss_pred CCCceEEEEECC--CCeEEEehHHHHHHhCCCHHHHcCCCHHHhcCcchhHH-HHHHHHHhhccCCcceeccCcEEEEEe
Confidence 355799999974 28999999999999999999999999887776654322 122211 1111 1111 23456678
Q ss_pred CCCCeEEEEEEEEEeecCCCCcEEEEEEEEecCc
Q 019399 101 KDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (341)
Q Consensus 101 ~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit 134 (341)
++|..+|+.++..|+.+ ..+ .+++++++|++
T Consensus 83 ~dG~~~~v~~~~~~~~~-~~~--~~~v~~~~~~~ 113 (114)
T 1ll8_A 83 RSGEKIPVSVWMKRMRQ-ERR--LCCVVVLEPVE 113 (114)
T ss_dssp TTCCCEEEECCEECCBS-SSS--BEEEEEEEECC
T ss_pred cCCCEEEEEEEEEeecc-CCc--cEEEEEEeecC
Confidence 99999999999999976 333 35778888875
No 85
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=98.95 E-value=8.6e-10 Score=79.57 Aligned_cols=85 Identities=11% Similarity=0.080 Sum_probs=59.8
Q ss_pred HHHHhhccCCceEEeCCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCChHHHHHHhhhhhccCcchhh---hh
Q 019399 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHSNRAS---MH 319 (341)
Q Consensus 243 ~~~~~~~~~~~i~i~d~~~~d~~i~~~N~~~~~~~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 319 (341)
+..++++++++|+++|.+ |+|+++|+++++++||++++++|+++..+.++..... ...+ ..+..+.. ..
T Consensus 15 ~~~~~~~~~~~i~~~d~~---g~i~~~N~~~~~l~G~~~~el~g~~~~~~~~~~~~~~-~~~~----~~~~~~~~e~~~~ 86 (118)
T 3olo_A 15 AHYLINNAVEASFCLGDN---WQFLYVNDATCRMTEYSREQLLSMNLQDIDVDFALHD-WEEI----RQKNNYTFKTRYR 86 (118)
T ss_dssp HHHHHHHCSSEEEEECTT---SBEEEECHHHHHHHCCCHHHHTTCBGGGTBTTGGGSC-HHHH----HHHSEEEEEEEEE
T ss_pred HHHHHhcCCceEEEECCC---CcEEEEHHHHHHHHCCCHHHHhCCChhhcccccCHHH-HHHH----HhcCcEEEEEEEE
Confidence 566899999999999988 9999999999999999999999999988774433222 2222 22222222 23
Q ss_pred cccccceeEEEEEecc
Q 019399 320 RRIKAHFGIFFTYHPS 335 (341)
Q Consensus 320 r~~~~~~~~~~~~~p~ 335 (341)
+++|...|+.+..+|.
T Consensus 87 ~~~g~~~~~~~~~~~~ 102 (118)
T 3olo_A 87 SQSGRIFLVEMSLTFL 102 (118)
T ss_dssp CTTCCEEEEEEEEEEE
T ss_pred ccCCCEEEEEEEEEEE
Confidence 4556656666555543
No 86
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=98.94 E-value=1.7e-08 Score=69.15 Aligned_cols=95 Identities=7% Similarity=0.052 Sum_probs=69.7
Q ss_pred CCCeEEEEcCCCCCccEEEecHHHHHhcCCChhhhcCCCCCcccCCCCCHHHHHHHHHHHHcCCCcEEEEEEEcCCCCeE
Q 019399 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPF 106 (341)
Q Consensus 27 ~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~~~ 106 (341)
++++++++|.+ |+++++|+++++++|++.++++|++...+ +. .......+.+.+..+..... .. .++...
T Consensus 1 ~~~~i~~~d~~---g~i~~~N~~~~~l~g~~~~~~~g~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~ 70 (96)
T 3a0s_A 1 METAIITLSKD---GRITEWNKKAEQLFGLKKENVLGRRLKDL--PD-FEEIGSVAESVFENKEPVFL--NF--YKFGER 70 (96)
T ss_dssp CCCEEEEEETT---SBEEEECHHHHHHHCCCHHHHTTSBGGGS--TT-CHHHHHHHHHHHHHTCCEEE--EE--EEETTE
T ss_pred CCceEEEEcCC---CCEeehhHHHHHHhCCCHHHhcCCCHHHC--cc-hHHHHHHHHHHhccCCeEEE--EE--EcCCcE
Confidence 46799999999 99999999999999999999999987666 22 23344445555555555432 22 234456
Q ss_pred EEEEEEEEeecCCCCc-EEEEEEEEec
Q 019399 107 WMLFKMSLVFGKEDGR-ATHFVAVQVP 132 (341)
Q Consensus 107 ~~~~~~~~~~~~~~g~-~~~~~~~~~D 132 (341)
|+.+...|+.+ .+|. +.+++++++|
T Consensus 71 ~~~~~~~p~~~-~~~~~~~g~v~~~~D 96 (96)
T 3a0s_A 71 YFNIRFSPFRN-AKTQLLEGVIITIDD 96 (96)
T ss_dssp EEEEEEEEEEC-TTTCCEEEEEEEEEC
T ss_pred EEEEEEEEeEc-CCCCeeeEEEEEecC
Confidence 88999999987 6554 5788888776
No 87
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=98.93 E-value=2.6e-09 Score=77.06 Aligned_cols=91 Identities=11% Similarity=0.047 Sum_probs=72.6
Q ss_pred hHHHHhhccCCceEEeCCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCChHHHHHHhhhhhccCcchhhhh--
Q 019399 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHSNRASMH-- 319 (341)
Q Consensus 242 ~~~~~~~~~~~~i~i~d~~~~d~~i~~~N~~~~~~~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 319 (341)
.+..++++++++++++|.+ |+|+++|+++++++||+.++++|+++..+.+++........+...+..+..+...+
T Consensus 8 ~~~~~~~~~~~~i~~~d~~---~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (124)
T 3lyx_A 8 QRAKAFDYVFDAIVVTDLQ---GFIIDWNKGSETLYGYSKEQAIGQPVNMLHVPGDTEHITSEVISAVENQGKWTGEIRM 84 (124)
T ss_dssp HHHHGGGTCSSEEEEEETT---CBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTTHHHHHHHHHHHHHHTSCEEEEEEE
T ss_pred HHHHHHhhcCceEEEECCC---CcEeehhhHHHHHhCCCHHHHcCCCHHHhcCcchhhHHHHHHHHHHHcCCcccceEEE
Confidence 3778899999999999998 99999999999999999999999999877777777777777777777766554433
Q ss_pred -cccccceeEEEEEecc
Q 019399 320 -RRIKAHFGIFFTYHPS 335 (341)
Q Consensus 320 -r~~~~~~~~~~~~~p~ 335 (341)
..+|...|+.+...|.
T Consensus 85 ~~~~g~~~~~~~~~~~~ 101 (124)
T 3lyx_A 85 LHKDGHIGWIESMCVPI 101 (124)
T ss_dssp ECTTSCEEEEEEEEEEE
T ss_pred EccCCCEEEEEEEEEEE
Confidence 3455556666666664
No 88
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=98.93 E-value=5.3e-10 Score=80.69 Aligned_cols=92 Identities=10% Similarity=-0.080 Sum_probs=74.3
Q ss_pred chHHHHhhccCCceEEeCCCCCCCCEEEecHHHHHHhCCCcccccCCcc--ccccCCCChHHHHHHhhhhhccCcchhhh
Q 019399 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNC--RFLNGVDTDTTVLYQSSTDKGKHSNRASM 318 (341)
Q Consensus 241 ~~~~~~~~~~~~~i~i~d~~~~d~~i~~~N~~~~~~~Gy~~~e~~G~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (341)
++++.++++++++++++|.+ +.++++|+++++++||++++++|... ..++||++.......+..++..+..+..+
T Consensus 4 ~~~~~l~~~~~~~i~~~d~~---~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~~e 80 (118)
T 3icy_A 4 EELQALVDNIPAAIYHLDVS---GQATIRFRPPAFLKTLVSEHAGTTRLNTLSMIHHDDRHMLSNAYSKLREAKHSLTLV 80 (118)
T ss_dssp HHHHHHHTTCCCCCEEECTT---SCEEECCCCCGGGGGGEEEETTEEEEGGGGGBCGGGHHHHHHHHHHHHHSCCEEEEE
T ss_pred HHHHHHHhcCCceEEEEEcC---CCceEEechhHhhcCCCHHHccCChhHHHHHcCHHHHHHHHHHHHHHHhcCCCceEE
Confidence 34788999999999999998 99999999999999999999988754 67889999999989998888887776666
Q ss_pred hcccccc---eeEEEEEecc
Q 019399 319 HRRIKAH---FGIFFTYHPS 335 (341)
Q Consensus 319 ~r~~~~~---~~~~~~~~p~ 335 (341)
+|...++ .|+.....|.
T Consensus 81 ~r~~~~~g~~~w~~~~~~~~ 100 (118)
T 3icy_A 81 YRIVTPEGKLHWIEDHMRSS 100 (118)
T ss_dssp EEEECTTCCEEEEEEEEEEE
T ss_pred EEEECCCCCEEEEEEEEEEE
Confidence 6544444 4555554443
No 89
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=98.92 E-value=3e-08 Score=71.59 Aligned_cols=99 Identities=13% Similarity=0.080 Sum_probs=74.9
Q ss_pred HHHHhhCCCeEEEEcCCCCCccEEEecHHHHHhcCCChhhhcCCCCCc-ccCCCCCHHHHHHHHHHHHcCCCcEEEEE-E
Q 019399 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM-FQGPRTNRRTIMEIREAIREERPIEVNLL-N 98 (341)
Q Consensus 21 ~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~ 98 (341)
..++++++.|++++|.+ |+++++|.+++++.|+++++++|+++.. +.+......+...+.+.+..|. ...... .
T Consensus 20 ~~~ld~l~~Gii~lD~~---g~I~~~N~~~e~~sG~~~~eviGk~~f~~~~~~~~~~~f~~rf~~~~~~g~-l~~~~~~v 95 (125)
T 1nwz_A 20 DGQLDGLAFGAIQLDGD---GNILQYNAAEGDITGRDPKQVIGKNFFKDVAPCTDSPEFYGKFKEGVASGN-LNTMFEYT 95 (125)
T ss_dssp HHHHTTCSSEEEEEETT---CBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHHTC-CEEEEEEE
T ss_pred HHHHhccCceEEEECCC---CEEEEEHHHHHHHhCCCHHHHcCCchhhhccchhcccHHHHHHHHHHhcCc-eeEEEEEE
Confidence 45799999999999999 9999999999999999999999999765 4444555666777788777666 444443 4
Q ss_pred EcCCCCeEEEEEEEEEeecCCCCcEEEE
Q 019399 99 YKKDGTPFWMLFKMSLVFGKEDGRATHF 126 (341)
Q Consensus 99 ~~~dg~~~~~~~~~~~~~~~~~g~~~~~ 126 (341)
++.+|+..++.++ +... .+|...++
T Consensus 96 ~~~~~~p~~v~i~--l~~~-~~~~~~~i 120 (125)
T 1nwz_A 96 FDYQMTPTKVKVH--MKKA-LSGDSYWV 120 (125)
T ss_dssp ECTTSCCEEEEEE--EEEC-SSSSEEEE
T ss_pred EcCCCCEEEEEEE--EEEc-CCCCEEEE
Confidence 4888986655554 4444 56666544
No 90
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=98.92 E-value=8.8e-10 Score=80.48 Aligned_cols=86 Identities=9% Similarity=0.043 Sum_probs=58.5
Q ss_pred HHHHhhccCCceEEeCCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCChHHHH-HHhhhhhccCcchhhhhcc
Q 019399 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL-YQSSTDKGKHSNRASMHRR 321 (341)
Q Consensus 243 ~~~~~~~~~~~i~i~d~~~~d~~i~~~N~~~~~~~Gy~~~e~~G~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~r~ 321 (341)
+..++++++++|+++|.+ |+|+++|+++++++||++++++|+++..+. |++..... .........+... ...
T Consensus 21 ~~~i~~~~~~~i~~~d~~---g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~ 93 (125)
T 3fc7_A 21 FESLVSDSPDGIVHLTTN---GTILSVNPSMAGRLGADPDTLVGQQLSAVM-DSEAANQRLEAGKSAVENGTAT---RSE 93 (125)
T ss_dssp -----CCSCCEEEEEETT---SBEEEECHHHHHHHTSCHHHHTTSBGGGSS-CHHHHHHHHHHHHHHHHHTSCE---EEE
T ss_pred HHHHHhcCCCeEEEEcCC---CeEEEECHHHHHHhCCCHHHHcCccHHHhC-CHHHHHHHHHHHHHHhcCCCeE---EeE
Confidence 777999999999999999 999999999999999999999999998887 43333322 2223444444322 233
Q ss_pred ccc-ceeEEEEEecc
Q 019399 322 IKA-HFGIFFTYHPS 335 (341)
Q Consensus 322 ~~~-~~~~~~~~~p~ 335 (341)
++. ..|+.+...|.
T Consensus 94 ~~~~~~~~~~~~~p~ 108 (125)
T 3fc7_A 94 DAVGGRHYHNQYIPV 108 (125)
T ss_dssp EEETTEEEEEEEEES
T ss_pred cCCCcEEEEEEEEeE
Confidence 444 56676777664
No 91
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=98.92 E-value=3.2e-09 Score=77.11 Aligned_cols=91 Identities=35% Similarity=0.606 Sum_probs=72.3
Q ss_pred hHHHHhhccCCceEEeC---CCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCChHHHHHHhhhhhccCcchhhh
Q 019399 242 SLYISLGRIKQSFVLID---PHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHSNRASM 318 (341)
Q Consensus 242 ~~~~~~~~~~~~i~i~d---~~~~d~~i~~~N~~~~~~~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (341)
.+..++++++++++++| .+ +.|+++|+++++++||+.++++|+++..+.++.........+...+..+..+...
T Consensus 7 ~~~~~~~~~~~~i~~~d~~d~~---~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (130)
T 2z6d_A 7 ELKTALSTLQQTFVVSDATQPH---CPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDTDKNEVAKIRDCVKNGKSYCGR 83 (130)
T ss_dssp CHHHHHHHTTCEEEEEETTSTT---CCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHhcccceeeeeccCCC---CcEEEecHHHHHHhCcCHHHHcCCChhhccCCCCCchHHHHHHHHHHcCCcceeE
Confidence 47889999999999999 67 9999999999999999999999999998888887777777777777766654433
Q ss_pred h---cccccceeEEEEEecc
Q 019399 319 H---RRIKAHFGIFFTYHPS 335 (341)
Q Consensus 319 ~---r~~~~~~~~~~~~~p~ 335 (341)
+ +.+|...|+.+...|.
T Consensus 84 ~~~~~~~g~~~~~~~~~~~~ 103 (130)
T 2z6d_A 84 LLNYKKDGTPFWNLLTVTPI 103 (130)
T ss_dssp EEEECTTSCEEEEEEEEEEE
T ss_pred EEEEcCCCcEEEEEEEEEEE
Confidence 2 3445555666665553
No 92
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=98.89 E-value=2.5e-09 Score=77.01 Aligned_cols=83 Identities=12% Similarity=0.151 Sum_probs=57.0
Q ss_pred cCCceEEeCCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCChHHHHHHhhhh-hcc-Ccch---h---hhhcc
Q 019399 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTD-KGK-HSNR---A---SMHRR 321 (341)
Q Consensus 250 ~~~~i~i~d~~~~d~~i~~~N~~~~~~~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~-~~~-~~~~---~---~~~r~ 321 (341)
.+++|+++|.+ +|+|+++|+++++++||+++|++|+++..+.++++... ...+... +.. +... . ...++
T Consensus 7 ~~~~i~~~d~~--~g~I~~~N~aa~~l~G~~~~el~g~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (114)
T 1ll8_A 7 FNKAIFTVDAK--TTEILVANDKACGLLGYSSQDLIGQKLTQFFLRSDSDV-VEALSEEHMEADGHAAVVFGTVVDIISR 83 (114)
T ss_dssp TTCEEEEEETT--TCBEEEECTTHHHHHTCCTTTTTTSBGGGGSSCTTTHH-HHHTTSSTTSSSSCSSCCCSSSEEECCT
T ss_pred CCceEEEEECC--CCeEEEehHHHHHHhCCCHHHHcCCCHHHhcCcchhHH-HHHHHHHhhccCCcceeccCcEEEEEec
Confidence 45799999863 28999999999999999999999999999887765433 3334332 222 1111 1 12456
Q ss_pred cccceeEEEEEecc
Q 019399 322 IKAHFGIFFTYHPS 335 (341)
Q Consensus 322 ~~~~~~~~~~~~p~ 335 (341)
+|+..|+.+..+|.
T Consensus 84 dG~~~~v~~~~~~~ 97 (114)
T 1ll8_A 84 SGEKIPVSVWMKRM 97 (114)
T ss_dssp TCCCEEEECCEECC
T ss_pred CCCEEEEEEEEEee
Confidence 67777777666654
No 93
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=98.89 E-value=4.1e-08 Score=71.03 Aligned_cols=98 Identities=14% Similarity=0.066 Sum_probs=74.0
Q ss_pred HHHhhCCCeEEEEcCCCCCccEEEecHHHHHhcCCChhhhcCCCCCc-ccCCCCCHHHHHHHHHHHHcCCCcEEEEE-EE
Q 019399 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM-FQGPRTNRRTIMEIREAIREERPIEVNLL-NY 99 (341)
Q Consensus 22 ~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~~ 99 (341)
.++++++.|++++|.+ |+|+++|.+++++.|+++++++|+++.. +.+......+...+.+.+..|. ...... .+
T Consensus 26 ~~ld~l~~GiivlD~d---g~I~~~N~~~e~isG~s~eeviGk~~f~~~~p~~~~~~f~grf~~~~~~G~-l~~~~~yv~ 101 (129)
T 1mzu_A 26 AEFDALPVGAIQVDGS---GVIHRYNRTESRLSGRIPERVIGRNFFTEVAPCTNIPAFSGRFMDGVTSGT-LDARFDFVF 101 (129)
T ss_dssp TTGGGCSSEEEEEETT---CBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHTSC-CEEEEEEEE
T ss_pred HHHhccCceEEEECCC---CeEEEEHHHHHHHhCCCHHHHcCCchhhhccchhcccHHHHHHHHHHhcCc-eeEEEEEEE
Confidence 4699999999999999 9999999999999999999999999765 4444555666777888888666 444443 44
Q ss_pred cCCCCeEEEEEEEEEeecCCCCcEEEE
Q 019399 100 KKDGTPFWMLFKMSLVFGKEDGRATHF 126 (341)
Q Consensus 100 ~~dg~~~~~~~~~~~~~~~~~g~~~~~ 126 (341)
+.+|+..++.+ ..... .+|...++
T Consensus 102 ~~~~~p~~v~i--~l~~~-~~~~~~~i 125 (129)
T 1mzu_A 102 DFQMAPVRVQI--RMQNA-GVPDRYWI 125 (129)
T ss_dssp ECSSCEEEEEE--EEEEC-SSTTEEEE
T ss_pred cCCCCEEEEEE--EEEEc-CCCCEEEE
Confidence 78888555554 44555 56666544
No 94
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=98.89 E-value=3.8e-09 Score=83.71 Aligned_cols=108 Identities=14% Similarity=0.141 Sum_probs=78.8
Q ss_pred hhHHHHHHHHhhCCCeEEEEcCCCCCccEEEecHHHHHhcCCChhhhcCCCCCcccCCCCCHHHHHHHHHHHHcCC-C-c
Q 019399 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER-P-I 92 (341)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~-~-~ 92 (341)
+....++.++++++++++++|.+ |+++++|+++++++|++.++++|+++..+.++.. . ...+..+. . .
T Consensus 77 ~~~~~l~~il~~~~~gvi~~D~~---g~I~~~N~aa~~llg~~~~~~~g~~~~~~~~~~~---~----~~~~~~~~~~~~ 146 (190)
T 2jhe_A 77 REHLALSALLEALPEPVLSVDMK---SKVDMANPASCQLFGQKLDRLRNHTAAQLINGFN---F----LRWLESEPQDSH 146 (190)
T ss_dssp HHHHHHHHHHHHCSSCEEEECTT---CBEEEECHHHHHHHTSCHHHHTTSBGGGTSTTCC---H----HHHHHTCCCSCE
T ss_pred HHHHHHHHHHHhCCCcEEEEcCC---CCEEEEcHHHHHHhCCCHHHhcCccHHHHhCCCC---H----HHHHhcCCCCCc
Confidence 34567889999999999999999 9999999999999999999999998777655432 1 22333333 2 2
Q ss_pred EEEEEEEcCCCCeEEEEEEEEEeecCCCCc----EEEEEEEEecCchhhh
Q 019399 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGR----ATHFVAVQVPIVSRKH 138 (341)
Q Consensus 93 ~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~----~~~~~~~~~Dite~k~ 138 (341)
..+... +|. ++.+...|+.+ .+|. +.|++.+++|||++++
T Consensus 147 ~~~~~~---~g~--~~~~~~~pi~~-~~~~~~~~~~g~v~~~~DiTe~~~ 190 (190)
T 2jhe_A 147 NEHVVI---NGQ--NFLMEITPVYL-QDENDQHVLTGAVVMLRSTIRMGR 190 (190)
T ss_dssp EEEEEE---TTE--EEEEEEEEETT-TTEEEEEEEE-HHHHHHHHTTTCC
T ss_pred ceEEEE---CCe--EEEEEEEEEEe-cCCCCcceEEeEEEEEeccchhcC
Confidence 223322 564 45677889875 4555 6788888999998763
No 95
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=98.88 E-value=9.4e-10 Score=79.30 Aligned_cols=104 Identities=9% Similarity=0.083 Sum_probs=77.3
Q ss_pred hhHHHHHHHHhhCCCeEEEEcCCCCCccEEEecHHHHHhcCC---ChhhhcCCCCCcccCCCCCHHHHHHHHHHHHcCCC
Q 019399 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGF---SRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP 91 (341)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~---~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 91 (341)
...+.++.++++++++++++|.+ |+++++|+++++++|+ +.++++|+++..+.++.. +...+..+..
T Consensus 12 ~~~~~~~~il~~~~~~i~~~d~~---g~i~~~N~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~-------~~~~~~~~~~ 81 (118)
T 2w0n_A 12 TLFEQRQAMLQSIKEGVVAVDDR---GEVTLINDAAQELLNYRKSQDDEKLSTLSHSWSQVVD-------VSEVLRDGTP 81 (118)
T ss_dssp TTHHHHHHHHHCCCCCCEEEBTT---TBCCCBCHHHHHHHCSCTTTTTSSCCCTTCCCSCTHH-------HHHHHHTTCC
T ss_pred HHHHHHHHHHhhccccEEEECCC---CcEeehhHHHHHHhCCCccChhhhhccCcccccCchh-------HHHHhccCce
Confidence 45667889999999999999999 9999999999999997 788999998776654321 3344444443
Q ss_pred cEEEEEEEcCCCCeEEEEEEEEEeecCCCCcEEEEEEEEecCc
Q 019399 92 IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (341)
Q Consensus 92 ~~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit 134 (341)
..... ...+| .|+.+...|+.+ +|.+.+++++++|||
T Consensus 82 ~~~~~--~~~~~--~~~~~~~~p~~~--~g~~~g~v~~~~DiT 118 (118)
T 2w0n_A 82 RRDEE--ITIKD--RLLLINTVPVRS--NGVIIGAISTFRDKT 118 (118)
T ss_dssp CCCCC--EESSS--CEECCCEECCCC--SSCCCCEEECCCCCC
T ss_pred eccEE--EEECC--EEEEEeeceeee--CCEEEEEEEEEEeCC
Confidence 32111 12345 367778888875 677888899999997
No 96
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=98.87 E-value=3.3e-09 Score=78.97 Aligned_cols=90 Identities=34% Similarity=0.659 Sum_probs=72.2
Q ss_pred HHHHhhccCCceEEeCC---CCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCChHHHHHHhhhhhccCcchhhhh
Q 019399 243 LYISLGRIKQSFVLIDP---HLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHSNRASMH 319 (341)
Q Consensus 243 ~~~~~~~~~~~i~i~d~---~~~d~~i~~~N~~~~~~~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (341)
+..++++++++++++|. + +.|+++|+++++++||+.++++|+++..+.++++.......+...+..+..+...+
T Consensus 4 l~~~~~~~~~~i~~~d~~~~~---~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (146)
T 2v0u_A 4 LATTLERIEKNFVITDPRLPD---NPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATVRKIRDAIDNQTEVTVQL 80 (146)
T ss_dssp CCCTGGGSSSCEEEECTTSTT---CCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHhcCCCcEEEEcCCCCC---ceEEEEcHHHHHHHCcCHHHHcCCCHHHhcCCcCChHHHHHHHHHHhcCCCcceEE
Confidence 44578899999999998 7 99999999999999999999999999989888888888888888887776654433
Q ss_pred ---cccccceeEEEEEecc
Q 019399 320 ---RRIKAHFGIFFTYHPS 335 (341)
Q Consensus 320 ---r~~~~~~~~~~~~~p~ 335 (341)
+++|...|+.+...|.
T Consensus 81 ~~~~~~g~~~~~~~~~~~~ 99 (146)
T 2v0u_A 81 INYTKSGKKFWNLFHLQPM 99 (146)
T ss_dssp EEECTTCCEEEEEEEEEEE
T ss_pred EEEecCCcEEEEEEEEEEe
Confidence 3444445666666654
No 97
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=98.87 E-value=2e-08 Score=85.59 Aligned_cols=107 Identities=8% Similarity=0.040 Sum_probs=88.7
Q ss_pred CeEEEEcCCCCCccEEEecHHHHHhcCCChhhhcCCCCCcccCCCCCHHHHHHHHHHHHcCCC---cEEEEEEEcCCCCe
Q 019399 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP---IEVNLLNYKKDGTP 105 (341)
Q Consensus 29 ~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~e~~~~~~dg~~ 105 (341)
..+...+.+ |+++++|+++..++||.++|++|+++..+++|++.......+.+.+..+.. ...+++++++||.+
T Consensus 175 ~Fitrh~~d---G~~~yvs~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~~~~~~f~s~~yR~~~kdG~~ 251 (317)
T 4dj3_A 175 IFTTTHTPG---CVFLEVDERAVPLLGYLPQDLIGTSILTYLHPEDRPLMVAIHQKVLKYAGHPPFEHSPVRFCTQNGEY 251 (317)
T ss_dssp EEEEEECTT---SBEEEECTTHHHHHSCCHHHHTTSBGGGGBCTTTTTHHHHHHHHHHHTTTSCCEECCCEEEECTTSCE
T ss_pred ceEEEecCC---CeEEEEChHHhhhcCcChHHHcCCCHHHeECHHHHHHHHHHHHHHHHcCCCccccceEEEEEccCCCE
Confidence 456667788 999999999999999999999999998999999988777777777776554 34688999999999
Q ss_pred EEEEEEEEEeecCCCCcEEEEEEEEecCchhhh
Q 019399 106 FWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (341)
Q Consensus 106 ~~~~~~~~~~~~~~~g~~~~~~~~~~Dite~k~ 138 (341)
+|+.....++.++.++++.++++...-++....
T Consensus 252 vwvet~~~~~~np~s~~~e~II~~h~v~~~p~~ 284 (317)
T 4dj3_A 252 VILDSSWSSFVNPWSRKVSFIIGRHKVRTSPLN 284 (317)
T ss_dssp EEEEEEEEEEECSSSCCEEEEEEEEEECCCCSS
T ss_pred EEEEEEEEEEECCCCCcccEEEEEEEeccCCCC
Confidence 999999999987446777777877776665543
No 98
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=98.85 E-value=1.8e-09 Score=78.74 Aligned_cols=86 Identities=12% Similarity=0.088 Sum_probs=66.2
Q ss_pred HHhhccCCceEEeCCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCChHHHHHHhhhhhccCcchhh--hhccc
Q 019399 245 ISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHSNRAS--MHRRI 322 (341)
Q Consensus 245 ~~~~~~~~~i~i~d~~~~d~~i~~~N~~~~~~~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~r~~ 322 (341)
.++++++++|+++|.+ |+|+++|+++++++||++++++|+++..+.++++.......+...+.++..... ..+.+
T Consensus 3 ~l~~~~~~~i~~~d~~---g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (126)
T 3mjq_A 3 NFLETIEDMILIINRE---GRLLYANTAVPKKLGYTHEELMSMHILTITSAGKMAEGEKILAELFAGKKESLPLSLEKKE 79 (126)
T ss_dssp TTGGGCSSEEEEEETT---SBEEEECTHHHHHHSCCHHHHHHSBHHHHHCTTCHHHHHHHHHHHHHTCCSEEEEEEECTT
T ss_pred hHHhhCCceEEEEeCC---CcEEEEcHHHHHHHCCCHHHHcCCCHHHHcCchhHHHHHHHHHHHHhCCCceeEEEEEccC
Confidence 4678899999999998 999999999999999999999999999888888877777777776665544211 22345
Q ss_pred ccceeEEEEEe
Q 019399 323 KAHFGIFFTYH 333 (341)
Q Consensus 323 ~~~~~~~~~~~ 333 (341)
|...|+.+...
T Consensus 80 g~~~~~~~~~~ 90 (126)
T 3mjq_A 80 GTSIPAKARIW 90 (126)
T ss_dssp SCEEEEEEEEE
T ss_pred CCEEEEEEEEE
Confidence 55555555544
No 99
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=98.84 E-value=3.7e-09 Score=81.03 Aligned_cols=90 Identities=24% Similarity=0.347 Sum_probs=74.6
Q ss_pred HHHHhhccCCceEEeCCCCCCC---CEEEecHHHHHHhCCCcccccCCccccccCCCChHHHHHHhhhhhccCcchhhhh
Q 019399 243 LYISLGRIKQSFVLIDPHLPDM---PMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHSNRASMH 319 (341)
Q Consensus 243 ~~~~~~~~~~~i~i~d~~~~d~---~i~~~N~~~~~~~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (341)
+..++++++++|+++|.+ + +|+++|+++++++||+.++++|+++..+.++.........+...+..+..+...+
T Consensus 27 ~~~i~~~~~~~i~~~d~~---~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (162)
T 3sw1_A 27 LQSMVDASNDGIVVAEKE---GDDTILIYVNAAFEYLTGYSRDEILYQDCRFLQGDDRDQLGRARIRKAMAEGRPCREVL 103 (162)
T ss_dssp HHHHHHTCSSEEEEEEEE---TTEEEEEEECHHHHHHHTCCHHHHTTSBGGGGTTTCCCCHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHhhccCcEEEEeCC---CCccEEEEECHHHHHHHCCCHHHHcCCCcceecCCCcCHHHHHHHHHHHhcCCCCcceE
Confidence 788999999999999998 8 9999999999999999999999999988888887777888888887776654433
Q ss_pred ---cccccceeEEEEEecc
Q 019399 320 ---RRIKAHFGIFFTYHPS 335 (341)
Q Consensus 320 ---r~~~~~~~~~~~~~p~ 335 (341)
+.+|...|+.+...|.
T Consensus 104 ~~~~~~g~~~~~~~~~~~i 122 (162)
T 3sw1_A 104 RNYRKDGSAFWNELSITPV 122 (162)
T ss_dssp EEECTTCCEEEEEEEEEEE
T ss_pred EEECCCCCEEEEEEEEEEe
Confidence 4556666776666664
No 100
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=98.84 E-value=2.5e-09 Score=81.75 Aligned_cols=89 Identities=12% Similarity=0.053 Sum_probs=68.7
Q ss_pred hHHHHhhccCCceEEeC-CCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCChHHHHHHhhhhhccCcchhh---
Q 019399 242 SLYISLGRIKQSFVLID-PHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHSNRAS--- 317 (341)
Q Consensus 242 ~~~~~~~~~~~~i~i~d-~~~~d~~i~~~N~~~~~~~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--- 317 (341)
.+..++++++.+|+++| .+ ++|+++|+++++++||+ +++|+++..+.++.........+.+++..+.+...
T Consensus 18 ~~~~~~~~~~~~i~~~d~~~---~~i~~~N~~~~~~~g~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 92 (158)
T 3k3c_A 18 DVRRIFEHIPAILVGLEGPD---HRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQIYEMLDRVYQTGEPQSGSEW 92 (158)
T ss_dssp HHHHHHHHCSSEEEEEETTT---TEEEEECHHHHHHCTTC--CSTTSBHHHHSGGGGGTTHHHHHHHHHHHCCCEEEEEE
T ss_pred HHHHHHhcCCceEEEEECCC---cEeHHHHHHHHHHcCCc--hhcCCcHHHhCCchhHHHHHHHHHHHHHhCCcccccce
Confidence 37889999999999999 88 99999999999999999 99999999888877766677778888866665322
Q ss_pred hhccc-----ccceeEEEEEecc
Q 019399 318 MHRRI-----KAHFGIFFTYHPS 335 (341)
Q Consensus 318 ~~r~~-----~~~~~~~~~~~p~ 335 (341)
.++.. +...|+.+.++|.
T Consensus 93 ~~~~~~~~~~g~~~~~~~~~~pi 115 (158)
T 3k3c_A 93 RLQTDYDGSGVEERYFDFVVTPR 115 (158)
T ss_dssp EEEEESSSSCEEEEEEEEEEEEE
T ss_pred eEEeccCCCCcceEEEEEEEEEe
Confidence 12112 3335666666664
No 101
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=98.84 E-value=7.9e-09 Score=72.65 Aligned_cols=84 Identities=24% Similarity=0.414 Sum_probs=61.9
Q ss_pred CceEEeCCCCCCCCEEEecHHHHHHhCCCcccccCCc--cccccCCCChHHHHHHhhhhhccCcchhhhh---cccccce
Q 019399 252 QSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQN--CRFLNGVDTDTTVLYQSSTDKGKHSNRASMH---RRIKAHF 326 (341)
Q Consensus 252 ~~i~i~d~~~~d~~i~~~N~~~~~~~Gy~~~e~~G~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---r~~~~~~ 326 (341)
.+|+++|...++|+|+++|+++++++||++++++|++ ...+.+++........+.+.+..+..+...+ +++|...
T Consensus 2 ~~i~i~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (110)
T 1byw_A 2 RKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQRRAAAQIAQALLGAEERKVEIAFYRKDGSCF 81 (110)
T ss_dssp CEEEEEETTSSSCBEEEECHHHHHHHTCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEECTTSCEE
T ss_pred CCEEEEeccCCCCcEEEECHHHHHHhCCCHHHHccCCCccccccCCcCCHHHHHHHHHHHhcCCCceEEEEEEcCCCCEE
Confidence 5789999865679999999999999999999999998 5566666666666677777776666554433 3455555
Q ss_pred eEEEEEecc
Q 019399 327 GIFFTYHPS 335 (341)
Q Consensus 327 ~~~~~~~p~ 335 (341)
|+.+...|.
T Consensus 82 ~~~~~~~~~ 90 (110)
T 1byw_A 82 LCLVDVVPV 90 (110)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEe
Confidence 666666553
No 102
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=98.83 E-value=4.1e-09 Score=76.15 Aligned_cols=67 Identities=13% Similarity=0.044 Sum_probs=56.6
Q ss_pred HHHhhccCCceEEeCCCCCCCCEEEecHHHHHHhCCCcccccCCccccc-cCCCChHHHHHHhhhhhccCc
Q 019399 244 YISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFL-NGVDTDTTVLYQSSTDKGKHS 313 (341)
Q Consensus 244 ~~~~~~~~~~i~i~d~~~~d~~i~~~N~~~~~~~Gy~~~e~~G~~~~~l-~~~~~~~~~~~~~~~~~~~~~ 313 (341)
...+++++.|++++|.+ |+|+++|.++++++||++++++|+++... .+......+...+.+.+.++.
T Consensus 20 ~~~ld~l~~Gii~lD~~---g~I~~~N~~~e~~sG~~~~eviGk~~f~~~~~~~~~~~f~~rf~~~~~~g~ 87 (125)
T 1nwz_A 20 DGQLDGLAFGAIQLDGD---GNILQYNAAEGDITGRDPKQVIGKNFFKDVAPCTDSPEFYGKFKEGVASGN 87 (125)
T ss_dssp HHHHTTCSSEEEEEETT---CBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHHTC
T ss_pred HHHHhccCceEEEECCC---CEEEEEHHHHHHHhCCCHHHHcCCchhhhccchhcccHHHHHHHHHHhcCc
Confidence 44689999999999999 99999999999999999999999999764 444566677777777777665
No 103
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=98.80 E-value=5.2e-09 Score=75.70 Aligned_cols=65 Identities=9% Similarity=-0.009 Sum_probs=56.0
Q ss_pred HhhccCCceEEeCCCCCCCCEEEecHHHHHHhCCCcccccCCccccc-cCCCChHHHHHHhhhhhccCc
Q 019399 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFL-NGVDTDTTVLYQSSTDKGKHS 313 (341)
Q Consensus 246 ~~~~~~~~i~i~d~~~~d~~i~~~N~~~~~~~Gy~~~e~~G~~~~~l-~~~~~~~~~~~~~~~~~~~~~ 313 (341)
.+++++.|++++|.+ |+|+++|.++++++||++++++|+++... .+......+...+.+.+.++.
T Consensus 27 ~ld~l~~GiivlD~d---g~I~~~N~~~e~isG~s~eeviGk~~f~~~~p~~~~~~f~grf~~~~~~G~ 92 (129)
T 1mzu_A 27 EFDALPVGAIQVDGS---GVIHRYNRTESRLSGRIPERVIGRNFFTEVAPCTNIPAFSGRFMDGVTSGT 92 (129)
T ss_dssp TGGGCSSEEEEEETT---CBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHTSC
T ss_pred HHhccCceEEEECCC---CeEEEEHHHHHHHhCCCHHHHcCCchhhhccchhcccHHHHHHHHHHhcCc
Confidence 688999999999999 99999999999999999999999999764 444566777777888777665
No 104
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=98.79 E-value=3.4e-09 Score=76.39 Aligned_cols=84 Identities=12% Similarity=-0.022 Sum_probs=64.2
Q ss_pred cCCceEEeCCCCCCCCEEEecHHHHHHhCCCcccccCC-ccccccCCCChHHHHHHhhhhhccCcchhhhhcccccce--
Q 019399 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQ-NCRFLNGVDTDTTVLYQSSTDKGKHSNRASMHRRIKAHF-- 326 (341)
Q Consensus 250 ~~~~i~i~d~~~~d~~i~~~N~~~~~~~Gy~~~e~~G~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-- 326 (341)
++++++.+|.. +++++|+|+++++++||++++++|. .+..++||++...+...+..++..+..+..++|...++|
T Consensus 2 a~~giw~~d~~--~~~~~~~n~~~~~l~G~~~~e~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~ 79 (115)
T 3h9w_A 2 TKAIPWKINWQ--TMAFEYIGPQIEALLGWPQGSWKSVEDWATRMHPEDQEWVVNFCVKQSECGVDHEADYRALHRDGHY 79 (115)
T ss_dssp -CCEEEEEETT--TTEEEEECTHHHHHHCSCGGGCCBHHHHHHSBCHHHHHHHHHHHHHHHHTTCCEEEEEEEECTTSCE
T ss_pred cceEEEEEEcC--CCcEEEEChhHHHHhCCChHHccCHHHHHHhcCHHHHHHHHHHHHHHHhcCCcccEEEEEEcCCCCE
Confidence 35788988843 3889999999999999999999994 235688999999999999999988877666666555544
Q ss_pred -eEEEEEecc
Q 019399 327 -GIFFTYHPS 335 (341)
Q Consensus 327 -~~~~~~~p~ 335 (341)
|+.....|.
T Consensus 80 ~w~~~~~~~~ 89 (115)
T 3h9w_A 80 VWIRDVVHVV 89 (115)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEEEEEEE
Confidence 444444443
No 105
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=98.78 E-value=5.4e-08 Score=82.71 Aligned_cols=107 Identities=7% Similarity=0.022 Sum_probs=88.6
Q ss_pred CeEEEEcCCCCCccEEEecHHHHHhcCCChhhhcCCCCCcccCCCCCHHHHHHHHHHHHcCCC-cE-EEEEEEcCCCCeE
Q 019399 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP-IE-VNLLNYKKDGTPF 106 (341)
Q Consensus 29 ~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~-~e~~~~~~dg~~~ 106 (341)
..+...+.+ |+++++|+++..++||.++|++|+.+..+.++++.......+.+.+..++. .. ..++++++||.++
T Consensus 166 ~Fitrh~~d---G~~~yvd~~~~~lLGY~peELig~s~~~~iHpdD~~~~~~~~~~~l~~~g~~~~~~~yR~~~kdG~~v 242 (309)
T 3gdi_A 166 IFTTTHTPN---CLFQAVDERAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKILQAGGQPFDYSPIRFRTRNGEYI 242 (309)
T ss_dssp EEEEEECTT---CBEEEECTTHHHHHSCCHHHHTTSBHHHHBCTTSHHHHHHHHHHHHHTTTCCEEEEEEEEECTTSCEE
T ss_pred eEEEEecCC---CeEEEECcccccccCcCHHHHcCCCHHHhCCHHHHHHHHHHHHHHHhcCCceeeceEEEEEccCCCEE
Confidence 356667788 999999999999999999999999988889998877766677777775544 44 5899999999999
Q ss_pred EEEEEEEEeecCCCCcEEEEEEEEecCchhhh
Q 019399 107 WMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (341)
Q Consensus 107 ~~~~~~~~~~~~~~g~~~~~~~~~~Dite~k~ 138 (341)
|+.....++.++.++++..+++...-++....
T Consensus 243 wvet~~~~~~np~s~~~e~ii~~h~v~~gp~~ 274 (309)
T 3gdi_A 243 TLDTSWSSFINPWSRKISFIIGRHKVRVGPLN 274 (309)
T ss_dssp EEEEEEEEEECTTTCCEEEEEEEEEEEECCSS
T ss_pred EEEEEEEEEECCCCCcccEEEEEEEEccCCCC
Confidence 99999998887447788888888888876543
No 106
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Probab=98.78 E-value=1.6e-08 Score=74.36 Aligned_cols=93 Identities=22% Similarity=0.378 Sum_probs=68.3
Q ss_pred HHHHhhccCCceEEeCCCCCCCCEEEecHHHHHHhCCCcccccCCc--cccccCCCChHHHHHHhhhhhccCcchhhhh-
Q 019399 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQN--CRFLNGVDTDTTVLYQSSTDKGKHSNRASMH- 319 (341)
Q Consensus 243 ~~~~~~~~~~~i~i~d~~~~d~~i~~~N~~~~~~~Gy~~~e~~G~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~- 319 (341)
+...+++++.+++++|.+.++++|+++|+++++++||+.++++|++ +..+.+++........+...+..+..+...+
T Consensus 21 ~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (138)
T 2l0w_A 21 IIRKFEGQSRKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPRTQRRAAAQIAQALLGAEERKVEIA 100 (138)
T ss_dssp HHHHHTTTTSEEEEEESSSTTCBEEEECSHHHHHHSCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHTTCSSCEEEEEE
T ss_pred HHHHHhcCCCCEEEEecCCCCCEEEEeCHHHHHHhCCCHHHHcCCCCcccccCCcccchhHHHHHHHHHhhcCCceeEEE
Confidence 5556777999999999921129999999999999999999999998 5667777776666777777777666554433
Q ss_pred --cccccceeEEEEEecc
Q 019399 320 --RRIKAHFGIFFTYHPS 335 (341)
Q Consensus 320 --r~~~~~~~~~~~~~p~ 335 (341)
++++...|+.+...|.
T Consensus 101 ~~~~~g~~~~~~~~~~~~ 118 (138)
T 2l0w_A 101 FYRKDGSCFLCLVDVVPV 118 (138)
T ss_dssp EECTTSCEEEEEEEEEEE
T ss_pred EECCCCCEEEEEEEEEEE
Confidence 3445555666655553
No 107
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis}
Probab=98.77 E-value=6.2e-09 Score=82.13 Aligned_cols=88 Identities=13% Similarity=0.052 Sum_probs=67.0
Q ss_pred HHHHhhccCCceEEeC-CCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCChHHHHHHhhhhhccCcchhh---h
Q 019399 243 LYISLGRIKQSFVLID-PHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHSNRAS---M 318 (341)
Q Consensus 243 ~~~~~~~~~~~i~i~d-~~~~d~~i~~~N~~~~~~~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~ 318 (341)
+..++++++++|+++| .+ ++|+++|++|++++||+ +++|+++..+.++.........+.+++..+..... .
T Consensus 39 l~~l~~~~~~~i~~~d~~~---g~i~~~N~a~~~l~G~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 113 (185)
T 3kx0_X 39 VRRIFEHIPAILVGLEGPD---HRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQIYEMLDRVYQTGEPQSGSEWR 113 (185)
T ss_dssp HHHHHHHCSSEEEEEETTT---TEEEEECHHHHHHCCCC--SCTTSBHHHHCTTSCSSSSHHHHHHHHHHCCCEEEEEEE
T ss_pred HHHHHhcCCceEEEEECCC---cEEEEEcHHHHHHcCCc--cccCCcHHHHCCchhhhhHHHHHHHHHHcCCccccccee
Confidence 7889999999999999 88 99999999999999999 99999999888777665566677777766655322 1
Q ss_pred hccc-----ccceeEEEEEecc
Q 019399 319 HRRI-----KAHFGIFFTYHPS 335 (341)
Q Consensus 319 ~r~~-----~~~~~~~~~~~p~ 335 (341)
++.. +...|+.+.+.|.
T Consensus 114 ~~~~~~~~gg~~~~~~~~~~pi 135 (185)
T 3kx0_X 114 LQTDYDGSGVEERYFDFVVTPR 135 (185)
T ss_dssp EC--------CCEEEEEEEEEE
T ss_pred EEeeccCCCCccEEEEEEEEEE
Confidence 2111 4446777776665
No 108
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=98.72 E-value=4.8e-08 Score=83.37 Aligned_cols=108 Identities=9% Similarity=0.035 Sum_probs=88.1
Q ss_pred CCeEEEEcCCCCCccEEEecHHHHHhcCCChhhhcCCCCCcccCCCCCHHHHHHHHHHHHcCC-Cc-EEEEEEEcCCCCe
Q 019399 28 PDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER-PI-EVNLLNYKKDGTP 105 (341)
Q Consensus 28 ~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~-~~e~~~~~~dg~~ 105 (341)
...+...+.+ |+++++|+++..++||.++|++|+.+..+.+|++.......+.+.+..++ .. ..+++++++||.+
T Consensus 176 ~~Fitrh~~d---G~~~yvd~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~~g~~~~~~~yR~~~kdG~~ 252 (320)
T 4dj2_A 176 RIFTTRHTPS---CLFQDVDERAAPLLGYLPQDLLGAPVLLFLHPEDRPLMLAIHKKILQLAGQPFDHSPIRFCARNGEY 252 (320)
T ss_dssp CEEEEEECTT---CBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHTTSSSCCEECCCEEEECSSSCE
T ss_pred ceEEEEecCC---ceEEEcCcceeccCCcChHHHcCCcHHHhCCHHHHHHHHHHHHHHHhcCCCcccceEEEEEccCCCE
Confidence 3456667788 99999999999999999999999998889998887766666666666433 34 3588999999999
Q ss_pred EEEEEEEEEeecCCCCcEEEEEEEEecCchhhh
Q 019399 106 FWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (341)
Q Consensus 106 ~~~~~~~~~~~~~~~g~~~~~~~~~~Dite~k~ 138 (341)
+|+.....++.++.++++.++++...-++....
T Consensus 253 vwvet~~~~~~np~s~~~e~II~~h~v~~gp~~ 285 (320)
T 4dj2_A 253 VTMDTSWAGFVHPWSRKVAFVLGRHKVRTAPLN 285 (320)
T ss_dssp EEEECEEEEEECTTTCSEEEEEEEEEESSCCSS
T ss_pred EEEEEEEEEEECCCCCCccEEEEEEEEccCCCC
Confidence 999999998887457888888988888877654
No 109
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.71 E-value=1.2e-08 Score=73.36 Aligned_cols=88 Identities=14% Similarity=0.006 Sum_probs=60.8
Q ss_pred HHHHhhccCCceEEeCCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCChHHHHHHhhhhhccCcch---hhhh
Q 019399 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHSNR---ASMH 319 (341)
Q Consensus 243 ~~~~~~~~~~~i~i~d~~~~d~~i~~~N~~~~~~~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 319 (341)
...++++++++|+++|.+ |+|+++|+++++++||++++++|+++..+.++... ....+..++..+... ...+
T Consensus 9 ~~~il~~~~~~i~~~D~~---g~I~~~N~aa~~l~g~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 83 (115)
T 3b33_A 9 PSAILNNMVTATLILDDG---LAIRYANPAAELLFSQSAKRIVEQSLSQLIQHASL--DLALLTQPLQSGQSITDSDVTF 83 (115)
T ss_dssp HHHHHHHCSSEEEEECTT---CBEEEECHHHHHHTTSCHHHHTTCBHHHHCSEEEC--CTHHHHHHHHHCCCEEEEEEEE
T ss_pred HHHHHhhcCceEEEECCC---CcEEEECHHHHHHhCCCHHHHhCCCHHHHhCccch--hhHHHHHHHHcCCcccCCceEE
Confidence 345899999999999999 99999999999999999999999998877654321 112333444444332 1122
Q ss_pred cccccceeEEEEEecc
Q 019399 320 RRIKAHFGIFFTYHPS 335 (341)
Q Consensus 320 r~~~~~~~~~~~~~p~ 335 (341)
++.|+..|+.+..+|.
T Consensus 84 ~~~g~~~~~~~~~~pi 99 (115)
T 3b33_A 84 VVDGRPLMLEVTVSPI 99 (115)
T ss_dssp EETTEEEEEEEEEEEE
T ss_pred ecCCCEEEEEEEEEEe
Confidence 2345555666666664
No 110
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=98.70 E-value=1.4e-08 Score=73.33 Aligned_cols=92 Identities=3% Similarity=-0.126 Sum_probs=69.2
Q ss_pred chHHHHhhccCCceEEeCCCCCCCCEEEecHHHHHHhCCCcccccCCc--cccccCCCChHHHHHHhhhhhccCcchhhh
Q 019399 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQN--CRFLNGVDTDTTVLYQSSTDKGKHSNRASM 318 (341)
Q Consensus 241 ~~~~~~~~~~~~~i~i~d~~~~d~~i~~~N~~~~~~~Gy~~~e~~G~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (341)
..+..++++++.+++++|.+ +++++++|+++++++||++++++|.+ +..+++|++.......+.. +..+..+...
T Consensus 11 ~~~~~~~~~~~~~i~~~d~~--~~~i~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e 87 (125)
T 3eeh_A 11 RRVRELTEATNDILWEFTAD--LSEVLVINSAYEDIWGRSVAKLRENPHDFLNGIHPEDRELMKDTMQS-LMDGESADVE 87 (125)
T ss_dssp HHHHHHHSCCCCEEEEEETT--SSCEEEECTHHHHHHSSCHHHHHHCGGGGGGGBCHHHHHHHHHHHHH-HHTTCCEEEE
T ss_pred HHHHHHHhcCCceEEEEEcC--CCcEEEecHHHHHHHCCCHHHHccCcHHHHHhcCHHHHHHHHHHHHH-HHcCCCccEE
Confidence 44888999999999999875 37999999999999999999999987 5667788877777666666 3444444333
Q ss_pred h---cccccceeEEEEEecc
Q 019399 319 H---RRIKAHFGIFFTYHPS 335 (341)
Q Consensus 319 ~---r~~~~~~~~~~~~~p~ 335 (341)
+ +++|...|+.+...|.
T Consensus 88 ~~~~~~~g~~~~~~~~~~~~ 107 (125)
T 3eeh_A 88 CRVNATEEYQRWVWIQGEPI 107 (125)
T ss_dssp EEECGGGTTCEEEEEEEEEE
T ss_pred EEEEcCCCCEEEEEEecEEE
Confidence 3 3455566777776664
No 111
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=98.69 E-value=4.2e-08 Score=75.17 Aligned_cols=90 Identities=19% Similarity=0.218 Sum_probs=65.2
Q ss_pred HHHHhhccCCceEEeCCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCChHHHHHHhhhhhccCcc----hhh-
Q 019399 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHSN----RAS- 317 (341)
Q Consensus 243 ~~~~~~~~~~~i~i~d~~~~d~~i~~~N~~~~~~~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~- 317 (341)
+..++++++++++++|.+ |.|+++|+++++++||+.++++|+++..+.++.........+......+.. +..
T Consensus 42 ~~~~l~~~~~~i~~~d~~---g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (167)
T 1v9y_A 42 FFPALEQNMMGAVLINEN---DEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNREGGKARVEGMSRE 118 (167)
T ss_dssp HHHHHHTCSSEEEEECTT---SBEEEECHHHHHHHSCCGGGTTTSBGGGGSCGGGTTTHHHHHHHHHC----------CE
T ss_pred HHHHHHhCCCCEEEECCC---CcEEEECHHHHHHhCCCHHHHcCCChhhccCccccchHHHHHHHHhhcCCCcccccceE
Confidence 788999999999999998 999999999999999999999999998888776655555555555554432 222
Q ss_pred --hhcccccceeEEEEEecc
Q 019399 318 --MHRRIKAHFGIFFTYHPS 335 (341)
Q Consensus 318 --~~r~~~~~~~~~~~~~p~ 335 (341)
..+.+|...|+.+...|.
T Consensus 119 ~~~~~~~g~~~~~~~~~~~~ 138 (167)
T 1v9y_A 119 LQLEKKDGSKIWTRFALSKV 138 (167)
T ss_dssp EEEECTTSCEEEEEEEEEEE
T ss_pred EEEEcCCCcEEEEEEEEEEE
Confidence 223445555666655553
No 112
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=98.68 E-value=4.9e-08 Score=71.07 Aligned_cols=50 Identities=14% Similarity=0.424 Sum_probs=46.0
Q ss_pred hHHHHhhccCCceEEeCCCCCCCCEEEecHHHHHHhC------------CCcccccCCccccccC
Q 019399 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTG------------YDRNEVVGQNCRFLNG 294 (341)
Q Consensus 242 ~~~~~~~~~~~~i~i~d~~~~d~~i~~~N~~~~~~~G------------y~~~e~~G~~~~~l~~ 294 (341)
++..+++++++||+++|.+ |+|+|+|++|++++| |++++++|+++..+.+
T Consensus 6 rl~~il~~~~~gviv~D~~---g~I~~~N~a~~~llg~~~~~i~~~~~g~~~~~~~G~~~~~~~~ 67 (121)
T 4hi4_A 6 RIASALDNVSANVMIADND---LNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHK 67 (121)
T ss_dssp HHHHHHTTSSSEEEEEETT---CBEEEECHHHHHHHHHTHHHHHHHCTTCCGGGCTTCBGGGGCS
T ss_pred HHHHHHhcCCccEEEEcCC---CeEEEecHHHHHHHHHHHHHHHHhcCCCChHHhcCCCHHHhcC
Confidence 4788999999999999999 999999999999995 9999999999988764
No 113
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=98.66 E-value=4.3e-08 Score=67.00 Aligned_cols=78 Identities=9% Similarity=0.005 Sum_probs=54.7
Q ss_pred CCceEEeCCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCChHHHHHHhhhhhccCcchhhhhcccccceeEEE
Q 019399 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHSNRASMHRRIKAHFGIFF 330 (341)
Q Consensus 251 ~~~i~i~d~~~~d~~i~~~N~~~~~~~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 330 (341)
+++|+++|.+ |+|+++|+++++++||++++++|+++..+ +.. ......+...+..+..+... ...+...|+.+
T Consensus 2 ~~~i~~~d~~---g~i~~~N~~~~~l~g~~~~~~~g~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 74 (96)
T 3a0s_A 2 ETAIITLSKD---GRITEWNKKAEQLFGLKKENVLGRRLKDL--PDF-EEIGSVAESVFENKEPVFLN-FYKFGERYFNI 74 (96)
T ss_dssp CCEEEEEETT---SBEEEECHHHHHHHCCCHHHHTTSBGGGS--TTC-HHHHHHHHHHHHHTCCEEEE-EEEETTEEEEE
T ss_pred CceEEEEcCC---CCEeehhHHHHHHhCCCHHHhcCCCHHHC--cch-HHHHHHHHHHhccCCeEEEE-EEcCCcEEEEE
Confidence 5799999998 99999999999999999999999998887 333 23344455555544443222 22344456666
Q ss_pred EEecc
Q 019399 331 TYHPS 335 (341)
Q Consensus 331 ~~~p~ 335 (341)
...|.
T Consensus 75 ~~~p~ 79 (96)
T 3a0s_A 75 RFSPF 79 (96)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 66654
No 114
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=98.65 E-value=6.8e-08 Score=79.17 Aligned_cols=85 Identities=8% Similarity=0.136 Sum_probs=61.0
Q ss_pred chHHHHhhccCCceEEeCCCCCCCCEEEecHHHHHHh------------CCCcccccCCccccccCCCChHHHHHHhhhh
Q 019399 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLT------------GYDRNEVVGQNCRFLNGVDTDTTVLYQSSTD 308 (341)
Q Consensus 241 ~~~~~~~~~~~~~i~i~d~~~~d~~i~~~N~~~~~~~------------Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~ 308 (341)
.++..++++++.+|+++|.+ |+|+|+|++|++++ ||++++++|+++..+... +.....+.+.
T Consensus 22 ~~l~~iLd~~~~~vii~D~~---g~I~~~N~a~~~ll~~~~~~~~~~l~G~~~~eliG~~~~~~~~~---~~~~~~~~~~ 95 (233)
T 3vol_A 22 ARIKSALDNVSANVMIADND---LNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHKN---PAHQRHLLAN 95 (233)
T ss_dssp HHHHHHHTTSSSEEEEEETT---SBEEEECHHHHHHHHHTHHHHHTTCTTCCTTSCTTCBGGGGSSS---HHHHHHHHHT
T ss_pred HHHHHHHhcCCCcEEEECCC---CcEEEecHHHHHHHHHHHHHHHhhcCCCCHHHHcCCCHHHHcCC---HHHHHHHHHh
Confidence 34778999999999999999 99999999999998 899999999999887642 2233344444
Q ss_pred hccCcchhhhhcccccceeEEEEEecc
Q 019399 309 KGKHSNRASMHRRIKAHFGIFFTYHPS 335 (341)
Q Consensus 309 ~~~~~~~~~~~r~~~~~~~~~~~~~p~ 335 (341)
+.. .+...++..+ .|+.++++|.
T Consensus 96 ~~~--~~~~~~~~~g--~~~~~~~~Pi 118 (233)
T 3vol_A 96 LTG--VHKAELNLGG--RRFSLDVVPV 118 (233)
T ss_dssp CCS--CEEEEEEETT--EEEEEEEEEE
T ss_pred ccc--ceeEEEEECC--EEEEEEEEEE
Confidence 332 2333333333 3556666665
No 115
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=98.48 E-value=1.2e-07 Score=72.05 Aligned_cols=90 Identities=9% Similarity=0.021 Sum_probs=63.8
Q ss_pred hHHHHhhccCCceEEeCCCCCCCCEEEecHH---HHHHhCCCcccccCCccccccCCCChHHHHHHhhhhhccCcchhhh
Q 019399 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDA---FLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHSNRASM 318 (341)
Q Consensus 242 ~~~~~~~~~~~~i~i~d~~~~d~~i~~~N~~---~~~~~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (341)
.+..++++++++|+++|.+ |+|+|+|++ +++++| ..++++|+++..++ |.........+.+++..+......
T Consensus 20 ~l~~IL~~~~~gI~~vD~~---g~I~~~N~a~~~~~~i~g-~~~~~iGr~v~~~~-~~~~~~~v~~i~~~l~~g~~~~~~ 94 (151)
T 2qkp_A 20 QANLILNHLPLEITFVNKD---DIFQYYNDSVPAAEMVFK-RTPSQVGRNVELCH-PPKVLDKVKKVFELLRNGQRDKVN 94 (151)
T ss_dssp HHHHHHHHSSSEEEEEETT---SBEEEECCCSCGGGCSSC-CCGGGTTSBGGGSS-CHHHHHHHHHHHHHHHTTSBSEEE
T ss_pred HHHHHHHhCCCceEEEcCC---CeEEEEeCCCchhhhhcC-CCHHHcCCCHHHhC-CHHHHHHHHHHHHHHHcCCccEEE
Confidence 4788999999999999999 999999999 999999 66789999998875 433444445566666655543332
Q ss_pred h-ccccc-ceeEEEEEecce
Q 019399 319 H-RRIKA-HFGIFFTYHPSV 336 (341)
Q Consensus 319 ~-r~~~~-~~~~~~~~~p~~ 336 (341)
+ ...+. ...+.+.+.|..
T Consensus 95 ~~~~~~~~~~~v~v~~~Pi~ 114 (151)
T 2qkp_A 95 MWFQSERLGKFVYVTYAAVR 114 (151)
T ss_dssp EEEEETTTTEEEEEEEEEEE
T ss_pred EEEecCCCCeEEEEEEEEEE
Confidence 2 22221 344556666653
No 116
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=98.47 E-value=8e-08 Score=68.87 Aligned_cols=52 Identities=21% Similarity=0.199 Sum_probs=46.7
Q ss_pred hHHHHhhccCCceEEeCCCCCCCCEEEecHHHHHHhCC---CcccccCCccccccCCC
Q 019399 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGY---DRNEVVGQNCRFLNGVD 296 (341)
Q Consensus 242 ~~~~~~~~~~~~i~i~d~~~~d~~i~~~N~~~~~~~Gy---~~~e~~G~~~~~l~~~~ 296 (341)
.+..++++++++|+++|.+ |+|+++|+++++++|| +.++++|+++..+.++.
T Consensus 16 ~~~~il~~~~~~i~~~d~~---g~i~~~N~~~~~~~g~~~~~~~~~~g~~~~~~~~~~ 70 (118)
T 2w0n_A 16 QRQAMLQSIKEGVVAVDDR---GEVTLINDAAQELLNYRKSQDDEKLSTLSHSWSQVV 70 (118)
T ss_dssp HHHHHHHCCCCCCEEEBTT---TBCCCBCHHHHHHHCSCTTTTTSSCCCTTCCCSCTH
T ss_pred HHHHHHhhccccEEEECCC---CcEeehhHHHHHHhCCCccChhhhhccCcccccCch
Confidence 3677999999999999999 9999999999999998 89999999998876543
No 117
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=98.46 E-value=1.6e-07 Score=88.36 Aligned_cols=90 Identities=9% Similarity=-0.020 Sum_probs=70.9
Q ss_pred HHHHhhccCCceEEeCCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCChHHHHHHhhhhhccCcchhhhh---
Q 019399 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHSNRASMH--- 319 (341)
Q Consensus 243 ~~~~~~~~~~~i~i~d~~~~d~~i~~~N~~~~~~~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 319 (341)
+...+++++++|+++|.+ |+|+|+|++|++++||+.+|++|++...+.++++.. ....+.+.+..+..+..++
T Consensus 520 ~~~lle~a~~~i~~~D~~---grI~~~N~a~~~l~G~s~~e~~g~~~l~~~~~~~~~-~~~~i~~~l~~g~~~~~E~~~~ 595 (635)
T 4eho_A 520 ASSQVHASMQPVLITDAE---GRILLMNDSFRDMLPAGSPSAVHLDDLAGFFVESND-FLRNVAELIDHGRGWRGEVLLR 595 (635)
T ss_dssp HHHHHHHCSSCCEEEETT---CCEEEECHHHHTTSCSSCCCCCSSGGGTTSSSSCTH-HHHHHHHHHHHCCCBCCCCEEC
T ss_pred HHHHHHhCCCcEEEECCC---CeEeeHHHHHHHHHCcChHHHcCcchhhccCCCCHH-HHHHHHHHHHcCCcEEEEEEEE
Confidence 566788999999999999 999999999999999999999999888787777665 4566677777777665544
Q ss_pred cccccceeEEEEEecce
Q 019399 320 RRIKAHFGIFFTYHPSV 336 (341)
Q Consensus 320 r~~~~~~~~~~~~~p~~ 336 (341)
+++|+..|+.+..+|+.
T Consensus 596 ~~dG~~~~~~~~~~pv~ 612 (635)
T 4eho_A 596 GAGNRPLPLAVRADPVT 612 (635)
T ss_dssp CSSSSCEECCCCEEEEC
T ss_pred ccCCcEEEEEEEEEEEE
Confidence 45555566666666653
No 118
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=98.30 E-value=2.5e-07 Score=80.47 Aligned_cols=67 Identities=9% Similarity=0.039 Sum_probs=52.0
Q ss_pred HHHHhhccCCceEEeCCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCChHHHHHHhhhhhccCcch
Q 019399 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHSNR 315 (341)
Q Consensus 243 ~~~~~~~~~~~i~i~d~~~~d~~i~~~N~~~~~~~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 315 (341)
+..++++++++|+++|.+ |+|+++|+++++++||++++++|+++..+.++++. ...+...+..+...
T Consensus 10 ~~~i~~~~~~~i~~~d~~---g~i~~~N~a~~~l~G~~~~e~~G~~~~~~~~~~~~---~~~~~~~~~~~~~~ 76 (349)
T 3a0r_A 10 SESILESLETAIITLSKD---GRITEWNKKAEQLFGLKKENVLGRRLKDLPDFEEI---GSVAESVFENKEPV 76 (349)
T ss_dssp CCSSGGGSSSEEEEEESS---SBCSCBCHHHHHHHSCCSTTTTTCBSTTSTTTTHH---HHHHHHHHHHCCCC
T ss_pred HHHHHhhhcCeEEEECCC---CCEEeeHHHHHHHhCCCHHHHcCcCHHHCcChhHH---HHHHHHHHhcCCce
Confidence 455889999999999999 99999999999999999999999999888544332 23334444444433
No 119
>2ykf_A Pdtas, probable sensor histidine kinase pdtas; transferase, two-component system, GAF domain, PAS domain; 2.00A {Mycobacterium tuberculosis} PDB: 2ykh_A
Probab=97.51 E-value=1.8e-07 Score=79.71 Aligned_cols=110 Identities=14% Similarity=0.102 Sum_probs=73.7
Q ss_pred HHhhCCCeEEEEcCCCCCccEEEecHHHHHhcC---CChhhhcCCCCCcccCCC---CCH--HHHHHHHHHHHc-CCCcE
Q 019399 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSG---FSRAEIIGRNGRMFQGPR---TNR--RTIMEIREAIRE-ERPIE 93 (341)
Q Consensus 23 ~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G---~~~~e~~g~~~~~l~~~~---~~~--~~~~~~~~~~~~-~~~~~ 93 (341)
+++++++|++++|.+ |+++++|+++.++++ ++ ++++|+++..+.+.. ... .....+...+.. +....
T Consensus 175 ~~~~~~dGIivvD~~---G~Ii~~N~aA~~ll~~lG~~-~~~iGk~l~el~~~~~~~~~~~~~~~~~l~~vl~~~~~~~~ 250 (305)
T 2ykf_A 175 SSPRAGDGFIRLDVD---GVVSYASPNALSAYHRMGLT-TELEGVNLIDATRPLISDPFEAHEVDEHVQDLLAGDGKGMR 250 (305)
Confidence 356899999999999 999999999999985 44 678899877665432 100 111212223332 22222
Q ss_pred EEEEEEcCCCCeEEEEEEEEEeecCCCCcEEEEEEEEecCchhhhccccc
Q 019399 94 VNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (341)
Q Consensus 94 ~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~Dite~k~~~~~~ 143 (341)
.+.. .+| .++.++..|+.+ +|.+.|.+.+++|||+.++.++++
T Consensus 251 ~ei~---~~~--~~l~v~~~Pi~~--~g~~~G~Vvv~rDITE~~~lE~eL 293 (305)
T 2ykf_A 251 MEVD---AGG--ATVLLRTLPLVV--AGRNVGAAILIRDVTEVKRRDRAL 293 (305)
Confidence 2211 122 456778889876 578889999999999999986665
No 120
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=98.17 E-value=4.6e-06 Score=65.66 Aligned_cols=54 Identities=15% Similarity=0.068 Sum_probs=49.1
Q ss_pred chHHHHhhccCCceEEeCCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCC
Q 019399 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDT 297 (341)
Q Consensus 241 ~~~~~~~~~~~~~i~i~d~~~~d~~i~~~N~~~~~~~Gy~~~e~~G~~~~~l~~~~~ 297 (341)
..+..+++++++||+++|.+ |+|+++|+++++++|++.++++|+++..+.++..
T Consensus 80 ~~l~~il~~~~~gvi~~D~~---g~I~~~N~aa~~llg~~~~~~~g~~~~~~~~~~~ 133 (190)
T 2jhe_A 80 LALSALLEALPEPVLSVDMK---SKVDMANPASCQLFGQKLDRLRNHTAAQLINGFN 133 (190)
T ss_dssp HHHHHHHHHCSSCEEEECTT---CBEEEECHHHHHHHTSCHHHHTTSBGGGTSTTCC
T ss_pred HHHHHHHHhCCCcEEEEcCC---CCEEEEcHHHHHHhCCCHHHhcCccHHHHhCCCC
Confidence 44788999999999999999 9999999999999999999999999988876544
No 121
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=98.07 E-value=3e-06 Score=74.22 Aligned_cols=90 Identities=10% Similarity=0.099 Sum_probs=64.2
Q ss_pred chHHHHhhccCCceEEeCCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCChHHHHHHhhhhhccCcchhhhhc
Q 019399 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQSSTDKGKHSNRASMHR 320 (341)
Q Consensus 241 ~~~~~~~~~~~~~i~i~d~~~~d~~i~~~N~~~~~~~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r 320 (341)
..+..+++++++||+++|.+ |+|+++|++ ++++ ++.++++|+++..++++ ........+..++..+........
T Consensus 239 ~~l~~IL~~l~dgIivvD~~---g~I~~~N~a-e~i~-~~~~e~iGr~v~~~~p~-~~~~~~~~l~~~l~~g~~~~~~~~ 312 (369)
T 3cax_A 239 EELKAIFEALPVDVTFIDKD---DRVRFFSPG-ERIF-TRTPSVLGRPVQLCHPP-KSVYVVNKILKAFKEGRKKEATFW 312 (369)
T ss_dssp HHHHHHHHHSSSEEEEECTT---SBEEEECCS-SCSS-CCCGGGTTCBTTTSSCG-GGHHHHHHHHHHHHHTSCSCEEEE
T ss_pred HHHHHHHHhCCCcEEEECCC---CcEEEEcCH-HHcc-CChHHHcCCcHHHHCCh-hhHHHHHHHHHHHHcCCceEEEEE
Confidence 45888999999999999999 999999999 9999 99999999999887643 333444555566665554322211
Q ss_pred ccccceeEEEEEecce
Q 019399 321 RIKAHFGIFFTYHPSV 336 (341)
Q Consensus 321 ~~~~~~~~~~~~~p~~ 336 (341)
......++.++++|..
T Consensus 313 ~~~~g~~v~v~~~PI~ 328 (369)
T 3cax_A 313 LRLREKYVYIKYVPLF 328 (369)
T ss_dssp EEETTEEEEEEEEEEE
T ss_pred EeeCCEEEEEEEEEEE
Confidence 1112245666666653
No 122
>2ykf_A Pdtas, probable sensor histidine kinase pdtas; transferase, two-component system, GAF domain, PAS domain; 2.00A {Mycobacterium tuberculosis} PDB: 2ykh_A
Probab=97.12 E-value=1.6e-06 Score=73.83 Aligned_cols=46 Identities=24% Similarity=0.158 Sum_probs=39.8
Q ss_pred HhhccCCceEEeCCCCCCCCEEEecHHHHHHhC---CCcccccCCccccccCC
Q 019399 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTG---YDRNEVVGQNCRFLNGV 295 (341)
Q Consensus 246 ~~~~~~~~i~i~d~~~~d~~i~~~N~~~~~~~G---y~~~e~~G~~~~~l~~~ 295 (341)
.++++++||+++|.+ |+|+++|+++++++| ++ ++++|+++..+...
T Consensus 175 ~~~~~~dGIivvD~~---G~Ii~~N~aA~~ll~~lG~~-~~~iGk~l~el~~~ 223 (305)
T 2ykf_A 175 SSPRAGDGFIRLDVD---GVVSYASPNALSAYHRMGLT-TELEGVNLIDATRP 223 (305)
Confidence 567889999999999 999999999999984 55 78999999887643
No 123
>1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator, complex, LXXLL motif, transcriptional regulation; 2.2A {Mus musculus} SCOP: d.110.3.8
Probab=97.65 E-value=8.2e-05 Score=53.45 Aligned_cols=101 Identities=11% Similarity=0.095 Sum_probs=75.7
Q ss_pred eEEEEcCCCCCccEEEecHHHHHhcCCCh--hhhcCCCCCcccCCCCCH--HHHHHHHHHHHcCCCcEEEEEEEcCCCCe
Q 019399 30 SFTITDPSISGHPIVFASRGFLKMSGFSR--AEIIGRNGRMFQGPRTNR--RTIMEIREAIREERPIEVNLLNYKKDGTP 105 (341)
Q Consensus 30 ~i~~~d~~~~~~~i~~~N~~~~~~~G~~~--~e~~g~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~e~~~~~~dg~~ 105 (341)
-+.-.|.+ |+++++.....+ .++.+ +|++|+.+.++.++.+.. ...+.+.+++..|.....-++++.++|..
T Consensus 9 F~sRh~~d---GKf~~vDq~~~r-~~~~~g~qdLlGrsiy~f~H~~D~~~s~l~~h~~~vl~~Gq~~S~~YRfr~k~g~~ 84 (132)
T 1oj5_A 9 FMTKQDTT---GKIISIDTSSLR-AAGRTGWEDLVRKCIYAFFQPQGREPSYARQLFQEVMTRGTASSPSYRFILNDGTM 84 (132)
T ss_dssp EEEEECTT---CCEEEEECHHHH-TTCCSCHHHHHHHHHHHHTSCBTTBCCHHHHHHHHHHHHSEEECCCEEEECTTSCE
T ss_pred eEEeecCC---CcEEEEeccccc-ccccccHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHcCCccccceEEEecCCcE
Confidence 44557788 999999998874 66777 899999998899988855 66777778887776666778999999999
Q ss_pred EEEEEEEEEeecCCCCcEEEEEEEEecCc
Q 019399 106 FWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (341)
Q Consensus 106 ~~~~~~~~~~~~~~~g~~~~~~~~~~Dit 134 (341)
+|+......+++|...++..++++-.=+.
T Consensus 85 V~~qT~sk~f~np~t~e~e~Ivs~n~v~r 113 (132)
T 1oj5_A 85 LSAHTRCKLCYPQSPDMQPFIMGIHIIDR 113 (132)
T ss_dssp EEEEEEEEEECC----CCCEEEEEEEEEC
T ss_pred EEEEEEEEEecCCCCCCCCEEEEEEEEEc
Confidence 99999888887743455555555544333
No 124
>1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator, complex, LXXLL motif, transcriptional regulation; 2.2A {Mus musculus} SCOP: d.110.3.8
Probab=97.28 E-value=0.00013 Score=52.46 Aligned_cols=71 Identities=7% Similarity=-0.065 Sum_probs=58.2
Q ss_pred eCCCCCCCCEEEecHHHHHHhCCCc--ccccCCccccccCCCChH--HHHHHhhhhhccCcchhhhhcccccceeEEEE
Q 019399 257 IDPHLPDMPMVYASDAFLKLTGYDR--NEVVGQNCRFLNGVDTDT--TVLYQSSTDKGKHSNRASMHRRIKAHFGIFFT 331 (341)
Q Consensus 257 ~d~~~~d~~i~~~N~~~~~~~Gy~~--~e~~G~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 331 (341)
.|.+ |+|+++..+..+ .+|.+ +|++|+.+-+++|++|.. ...+...+++.++......||..-++|...|.
T Consensus 13 h~~d---GKf~~vDq~~~r-~~~~~g~qdLlGrsiy~f~H~~D~~~s~l~~h~~~vl~~Gq~~S~~YRfr~k~g~~V~~ 87 (132)
T 1oj5_A 13 QDTT---GKIISIDTSSLR-AAGRTGWEDLVRKCIYAFFQPQGREPSYARQLFQEVMTRGTASSPSYRFILNDGTMLSA 87 (132)
T ss_dssp ECTT---CCEEEEECHHHH-TTCCSCHHHHHHHHHHHHTSCBTTBCCHHHHHHHHHHHHSEEECCCEEEECTTSCEEEE
T ss_pred ecCC---CcEEEEeccccc-ccccccHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHcCCccccceEEEecCCcEEEE
Confidence 4566 999999999884 78888 999999999999999965 78888889998888777788877776654333
No 125
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9
Probab=94.25 E-value=0.053 Score=46.24 Aligned_cols=38 Identities=8% Similarity=0.022 Sum_probs=33.5
Q ss_pred CCCEEEecHHHHHHhCCCcccccCCccccccCCCChHH
Q 019399 263 DMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTT 300 (341)
Q Consensus 263 d~~i~~~N~~~~~~~Gy~~~e~~G~~~~~l~~~~~~~~ 300 (341)
+++|+.+|..+.+++|+++++++|+++..+.+|+....
T Consensus 52 ~~~i~~~S~N~~~~lg~~~~~llG~~l~~ll~~~~~~~ 89 (337)
T 2ool_A 52 DLRIASVSANVEDLLRQPPASLLNVPIAHYLTAASAAR 89 (337)
T ss_dssp TCBEEEEETTHHHHHSSCGGGGTTCBGGGGBCHHHHHH
T ss_pred CCEEEEEehhHHHHHCcCHHHHcCCCHHHHcCHHHHHH
Confidence 48999999999999999999999999999987755443
No 126
>4ew7_A Conjugative transfer: regulation; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology; 1.67A {Salmonella enterica subsp}
Probab=91.50 E-value=0.45 Score=32.00 Aligned_cols=36 Identities=14% Similarity=0.270 Sum_probs=31.1
Q ss_pred HHHHhhccCCceEEeCCCCCCCCEEEecHHHHHHhCCCccc
Q 019399 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNE 283 (341)
Q Consensus 243 ~~~~~~~~~~~i~i~d~~~~d~~i~~~N~~~~~~~Gy~~~e 283 (341)
+..+..++|.++++-+.+ ..|+|.|-+|.+|+ +.+|
T Consensus 22 iq~iY~nSPVpVCVRNq~---RkilYaN~aF~elF--~Ked 57 (127)
T 4ew7_A 22 IQDIYKNSPVPVCVRNQS---RKIIYANGAFIELF--SKED 57 (127)
T ss_dssp HHHHHTTCSSCEEEECTT---SCEEEECHHHHHHT--TSCC
T ss_pred HHhhhcCCCccEEEeccc---ceEEEecchHHHHh--hccc
Confidence 567889999999999998 99999999999994 4444
No 127
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9
Probab=86.14 E-value=0.76 Score=39.13 Aligned_cols=39 Identities=8% Similarity=-0.002 Sum_probs=32.2
Q ss_pred EEEcCCCCCccEEEecHHHHHhcCCChhhhcCCCCCcccCC
Q 019399 32 TITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGP 72 (341)
Q Consensus 32 ~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~ 72 (341)
++++.+ +++++.+|..+.+++|+++++++|++...+.++
T Consensus 46 l~~~~~--~~~i~~~S~N~~~~lg~~~~~llG~~l~~ll~~ 84 (337)
T 2ool_A 46 FVVSET--DLRIASVSANVEDLLRQPPASLLNVPIAHYLTA 84 (337)
T ss_dssp EEECTT--TCBEEEEETTHHHHHSSCGGGGTTCBGGGGBCH
T ss_pred EEEECC--CCEEEEEehhHHHHHCcCHHHHcCCCHHHHcCH
Confidence 445543 488999999999999999999999988777654
No 128
>4dah_A Sporulation kinase D; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology, PAS-like fold; 2.03A {Bacillus subtilis} PDB: 4dbj_A 4dbi_A 4dak_A 3fos_A
Probab=82.62 E-value=15 Score=28.43 Aligned_cols=96 Identities=9% Similarity=0.081 Sum_probs=54.1
Q ss_pred HHHHHHHHhhCCC--eEEEEcCCCCCccEEEecHHHHHhcCCChhhhcCCCCCcccCCCCCHHHHHHHHHHHHcCCCcEE
Q 019399 17 TLWVHEALDELPD--SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94 (341)
Q Consensus 17 ~~~~~~~~~~~~~--~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (341)
...+..+....+. .+++.|.+ |.++..+.. ...+.. ..+. ..+..++..+..+-.
T Consensus 57 ~~~L~~~~~~~~~~~~i~i~d~~---G~~~~~~~~----------~~~~~~------~~~r----~~f~~a~~~~~~~is 113 (217)
T 4dah_A 57 QSILEKTFDSEPRFSGLYFLNAK---GDVTASTTE----------LKTKVN------LADR----SFFIKAKETKKTVIS 113 (217)
T ss_dssp HHHHHHHHTTCTTEEEEEEEETT---CBEEEESSC----------CSSCCB------CTTS----HHHHHHHHHCSCEEC
T ss_pred HHHHHHHHhcCCcccEEEEECCC---CcEEEecCC----------CCCCCC------cchh----HHHHHHHhcCCcEEe
Confidence 3445555555554 68889999 988765430 001111 1111 233444554554333
Q ss_pred EEEEEcCCCCeEEEEEEEEEeecCCCCcEEEEEEEEecCchhhh
Q 019399 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (341)
Q Consensus 95 e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~Dite~k~ 138 (341)
+...-...|. ++..-..|+.+ .+|++.|++++..++....+
T Consensus 114 ~~~~~~~~g~--~~i~ia~pi~~-~~g~~~Gvl~~~i~l~~l~~ 154 (217)
T 4dah_A 114 DSYSSRITGQ--PIFTICVPVLD-SKRNVTDYLVAAIQIDYLKN 154 (217)
T ss_dssp CCEECTTTCS--EEEEEEEEEEC-TTSCEEEEEEEEEEHHHHHH
T ss_pred ceEEcCCCCC--EEEEEEEEEEC-CCCCEEEEEEEEEcHHHHHH
Confidence 3333233455 55566789987 78999999988877665433
No 129
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A*
Probab=78.82 E-value=3.2 Score=35.22 Aligned_cols=40 Identities=15% Similarity=0.039 Sum_probs=33.8
Q ss_pred eEEeCCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCC
Q 019399 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGV 295 (341)
Q Consensus 254 i~i~d~~~~d~~i~~~N~~~~~~~Gy~~~e~~G~~~~~l~~~ 295 (341)
.++++. ++++|+.++....+++|.++++++|+++..+..+
T Consensus 55 LL~l~~--~~~~I~~~S~N~~~~lg~~~~~llG~~l~~ll~~ 94 (343)
T 3s7o_A 55 LLTADG--HSGEVLQMSLNAATFLGQEPTVLRGQTLAALLPE 94 (343)
T ss_dssp EEEEET--TTCBEEEEETTHHHHHSSCHHHHTTCBHHHHSTT
T ss_pred EEEEEC--CCCEEEEEcccHHHHhCcChHHHcCCCHHHHHhH
Confidence 344554 2499999999999999999999999999988866
No 130
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}
Probab=73.30 E-value=3 Score=35.22 Aligned_cols=40 Identities=23% Similarity=0.391 Sum_probs=33.9
Q ss_pred eEEeCCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCC
Q 019399 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD 296 (341)
Q Consensus 254 i~i~d~~~~d~~i~~~N~~~~~~~Gy~~~e~~G~~~~~l~~~~ 296 (341)
.+++|. +++|+.++....+++|.++++++|++...+..++
T Consensus 32 Ll~~~~---~~~I~~~S~N~~~~lg~~~~~~lG~~l~~ll~~~ 71 (327)
T 4e04_A 32 LLALAA---DMTIVAGSDNLPELTGLAIGALIGRSAADVFDSE 71 (327)
T ss_dssp EEEECT---TCBEEEEETTHHHHHSCCHHHHTTCBHHHHBCHH
T ss_pred EEEEcC---CCeEEEEcccHHHHhCCChHhhcCCCHHHHcCHH
Confidence 455554 4999999999999999999999999999887543
No 131
>4ew7_A Conjugative transfer: regulation; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology; 1.67A {Salmonella enterica subsp}
Probab=70.80 E-value=21 Score=24.01 Aligned_cols=34 Identities=15% Similarity=0.397 Sum_probs=30.5
Q ss_pred HHHHHHhhCCCeEEEEcCCCCCccEEEecHHHHHhcC
Q 019399 19 WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSG 55 (341)
Q Consensus 19 ~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G 55 (341)
-.+.+..++|.++++-+.+ .+++|+|.+|.+++-
T Consensus 21 ~iq~iY~nSPVpVCVRNq~---RkilYaN~aF~elF~ 54 (127)
T 4ew7_A 21 SIQDIYKNSPVPVCVRNQS---RKIIYANGAFIELFS 54 (127)
T ss_dssp HHHHHHTTCSSCEEEECTT---SCEEEECHHHHHHTT
T ss_pred hHHhhhcCCCccEEEeccc---ceEEEecchHHHHhh
Confidence 3567889999999999999 999999999999964
No 132
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}
Probab=64.49 E-value=35 Score=28.69 Aligned_cols=53 Identities=19% Similarity=0.235 Sum_probs=38.3
Q ss_pred eEEEEcCCCCCccEEEecHHHHHhcCCChhhhcCCCCCcccCCCCCHHHHHHHHHHHHcC
Q 019399 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89 (341)
Q Consensus 30 ~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~ 89 (341)
.++++|.+ ++|+.++.++..++|.++++++|++...+..+ .....+...+...
T Consensus 31 ~Ll~~~~~---~~I~~~S~N~~~~lg~~~~~~lG~~l~~ll~~----~~~~~l~~~l~~~ 83 (327)
T 4e04_A 31 LLLALAAD---MTIVAGSDNLPELTGLAIGALIGRSAADVFDS----ETHNRLTIALAEP 83 (327)
T ss_dssp EEEEECTT---CBEEEEETTHHHHHSCCHHHHTTCBHHHHBCH----HHHHHHHHHHHSC
T ss_pred EEEEEcCC---CeEEEEcccHHHHhCCChHhhcCCCHHHHcCH----HHHHHHHHHhhcc
Confidence 34566755 99999999999999999999999987766542 2334455555443
No 133
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*
Probab=54.31 E-value=13 Score=33.47 Aligned_cols=37 Identities=19% Similarity=0.171 Sum_probs=30.9
Q ss_pred eEEeCCCCCCCCEEEecHHHHHHhCCCcccccCCcccc-ccCC
Q 019399 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRF-LNGV 295 (341)
Q Consensus 254 i~i~d~~~~d~~i~~~N~~~~~~~Gy~~~e~~G~~~~~-l~~~ 295 (341)
.+++|.+ ++|+.++....+++|.++ ++|+++.. +..+
T Consensus 29 Ll~l~~~---~~I~~~S~N~~~~lg~~~--~lG~~l~~~ll~~ 66 (505)
T 3nhq_A 29 LVTLRAD---GMVLAASENIQALLGFVA--SPGSYLTQEQVGP 66 (505)
T ss_dssp EEEECTT---SBEEEEETTHHHHHSSCC--CTTCBCCHHHHHH
T ss_pred EEEEcCC---CeEEEEcccHHHHhCccc--ccCCchhhhhCCH
Confidence 4555655 999999999999999998 99999988 7644
No 134
>3lif_A Putative diguanylate cyclase (ggdef) with PAS/PAC; PDC fold, signaling protein; HET: CIT; 2.70A {Rhodopseudomonas palustris}
Probab=53.20 E-value=80 Score=24.76 Aligned_cols=95 Identities=12% Similarity=0.141 Sum_probs=52.0
Q ss_pred hHHHHHHHHhhCCC--eEEEEcCCCCCccEEEecHHHHHhcCCChhhhcCCCCCcccCCCCCHHHHHHHHHHHH--cCCC
Q 019399 16 YTLWVHEALDELPD--SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIR--EERP 91 (341)
Q Consensus 16 ~~~~~~~~~~~~~~--~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~--~~~~ 91 (341)
....+..+....+. .+++.|.+ |. +..+.. .. ..+.. ..+. ..+..+.. .+..
T Consensus 56 ~~~~L~~~~~~~~~~~~i~i~d~~---G~-~~~s~~------~~---~~~~~------~~~r----~~f~~a~~~~~~~~ 112 (254)
T 3lif_A 56 FNERLRALADNLPQLSDVAILDAD---GQ-LTYASV------KP---VPALD------NSDR----SYFRYHRANDDHTL 112 (254)
T ss_dssp HHHHHHHHHHHCTTEEEEEEECTT---SB-EEEESS------SS---EECCB------CTTS----HHHHHHHHCCCCCC
T ss_pred HHHHHHHHHhcCCccceEEEECCC---CC-EecCCC------CC---CCCCC------cccH----HHHHHHHhCCCCCe
Confidence 34555666666665 68899999 88 443210 00 01111 1111 23344444 3444
Q ss_pred cEEEEEEEcCCCCeEEEEEEEEEeecCCCCcEEEEEEEEecCchh
Q 019399 92 IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136 (341)
Q Consensus 92 ~~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~Dite~ 136 (341)
+-.+...-...|. |+..-..|+.+ .+|++.|++++..++...
T Consensus 113 ~is~p~~~~~~g~--~~i~~~~pi~~-~~g~~~Gvl~~~i~l~~l 154 (254)
T 3lif_A 113 LITGPIQSRTSGV--WVFVVSRRLET-TDGKFFGVVVATIESEYF 154 (254)
T ss_dssp EEEEEEECTTTCC--EEEEEEEEEEC-TTCCEEEEEEEEECHHHH
T ss_pred EECCceecCCCCc--EEEEEEeeeeC-CCCCEeEEEEEEECHHHH
Confidence 3333333233454 55566789987 789999999887776543
No 135
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Probab=49.94 E-value=5 Score=36.31 Aligned_cols=41 Identities=12% Similarity=0.173 Sum_probs=33.5
Q ss_pred eEEeCCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCC
Q 019399 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD 296 (341)
Q Consensus 254 i~i~d~~~~d~~i~~~N~~~~~~~Gy~~~e~~G~~~~~l~~~~ 296 (341)
.++++.. +++|+.++....+++|.++++++|+++..+..++
T Consensus 32 LLal~~~--~~~I~~~S~N~~~~lg~~~~~llG~~l~~ll~~~ 72 (520)
T 3zq5_A 32 VVVLQEP--DLTISQISANCTGILGRSPEDLLGRTLGEVFDSF 72 (520)
T ss_dssp EEEEETT--TTEEEEEETTHHHHHSCCHHHHTTSBHHHHCEES
T ss_pred EEEEECC--CCEEEEEcccHHHHhCcChHHHcCCCHHHHcCHH
Confidence 3445542 4899999999999999999999999998877544
No 136
>2hje_A Autoinducer 2 sensor kinase/phosphatase LUXQ; PER/ARNT/simple-minded (PAS) fold, autoinducer-2 (AI-2), quorum sensing, histidine sensor kinase; 1.70A {Vibrio harveyi} SCOP: d.110.6.3 PDB: 2hj9_C 1zhh_B*
Probab=42.71 E-value=1.2e+02 Score=23.70 Aligned_cols=86 Identities=12% Similarity=0.043 Sum_probs=54.8
Q ss_pred HhhCCCeEEEEcCCCCCccEEEecHHHHHhcCCChhhhcCCCCCcccCCCCCHHHHHHHHHHHHcCCCcEEEEEEEcCCC
Q 019399 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDG 103 (341)
Q Consensus 24 ~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg 103 (341)
.+++|+--++.+.+ + +.|-++-...+|++..++ ..+.+....+..|.... ....+
T Consensus 58 p~~~pDfRFI~~~~---~--~~WdDgNa~FyGi~~~~L------------------~~L~~~v~~~~~Wh~~~--~~s~~ 112 (221)
T 2hje_A 58 PSHTPEFRFLTDHK---G--IIWDDGNAHFYGVNDLIL------------------DSLANRVSFSNNWYYIN--VMTSI 112 (221)
T ss_dssp GGGCCSEEEEECSS---S--EEEECSGGGGGTCCHHHH------------------HHHHHHCCSSSSCEEEE--EEETT
T ss_pred cCCCCcEEEEEeCC---c--eEEECCCccccccCHHHH------------------HHHHhhhcccCceEEEE--eccCC
Confidence 46888988888887 4 333444456677665432 23333344445565433 23466
Q ss_pred CeEEEEEEEEEeecCCCCcEEEEEEEEecCc
Q 019399 104 TPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (341)
Q Consensus 104 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit 134 (341)
..+++.++-+|+.++.+|+++|++-+..-..
T Consensus 113 g~~~lLvRR~pIi~~~tGeVlG~Ly~gvVLn 143 (221)
T 2hje_A 113 GSRHMLVRRVPILDPSTGEVLGFSFNAVVLD 143 (221)
T ss_dssp EEEEEEEEEEEEEETTTTEEEEEEEEEEECT
T ss_pred CceEEEEEccceecCCCCcEEEEEEEEEEec
Confidence 7778889999998867999999875554433
No 137
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A*
Probab=40.60 E-value=14 Score=31.31 Aligned_cols=40 Identities=10% Similarity=0.034 Sum_probs=32.8
Q ss_pred EEEEcCCCCCccEEEecHHHHHhcCCChhhhcCCCCCcccCC
Q 019399 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGP 72 (341)
Q Consensus 31 i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~ 72 (341)
+++++.. +++|+.++.++..++|.++++++|++...+..+
T Consensus 55 LL~l~~~--~~~I~~~S~N~~~~lg~~~~~llG~~l~~ll~~ 94 (343)
T 3s7o_A 55 LLTADGH--SGEVLQMSLNAATFLGQEPTVLRGQTLAALLPE 94 (343)
T ss_dssp EEEEETT--TCBEEEEETTHHHHHSSCHHHHTTCBHHHHSTT
T ss_pred EEEEECC--CCEEEEEcccHHHHhCcChHHHcCCCHHHHHhH
Confidence 4556653 389999999999999999999999987776654
No 138
>3pxp_A Helix-turn-helix domain protein; DNA-binding, basic helix-loop-helix motif, BHLH motif, lambd repressor-like DNA-binding fold; HET: MSE MYR; 2.30A {Chloroflexus aurantiacus}
Probab=39.95 E-value=42 Score=27.70 Aligned_cols=35 Identities=9% Similarity=0.089 Sum_probs=30.4
Q ss_pred chHHHHhhccCCceEEeCCCCCCCCEEEecHHHHHHhC
Q 019399 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTG 278 (341)
Q Consensus 241 ~~~~~~~~~~~~~i~i~d~~~~d~~i~~~N~~~~~~~G 278 (341)
..+..+++..+.+.++.|.. ..|+.+|+++..++|
T Consensus 99 p~l~~lLd~l~~PA~V~d~~---~dvla~N~~a~~L~~ 133 (292)
T 3pxp_A 99 QYLIDMIRNMNVPAFVTDQY---VNIIAANMITIRFFN 133 (292)
T ss_dssp HHHHHHHHTCSSCEEEEETT---CBEEEEEHHHHHHHT
T ss_pred HHHHHHHHhcCCCeEEECCC---CCHhhcCHHHHHHhC
Confidence 34777888887789999999 999999999999996
No 139
>3c38_A Autoinducer 2 sensor kinase/phosphatase LUXQ; 2-component system, quorum sensing, histidine kinase, hydrolase, inner membrane, membrane; 2.30A {Vibrio cholerae} PDB: 3c30_A
Probab=33.34 E-value=1.9e+02 Score=23.35 Aligned_cols=87 Identities=14% Similarity=0.220 Sum_probs=54.2
Q ss_pred HhhCCCeEEEEcCCCCCccEEEecHHHHHhcCCChhhhcCCCCCcccCCCCCHHHHHHHHHHHHcCCCcEEEEEEEcCCC
Q 019399 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDG 103 (341)
Q Consensus 24 ~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg 103 (341)
..++|+--++.+.+ |. .|-++-...+|++..++ ..+.+....+..|.... ....+
T Consensus 77 p~~~pDfRFI~~~~---~~--~WdDgNa~FyGi~~~~L------------------~~L~~~v~~~~~Wh~~~--~~s~~ 131 (270)
T 3c38_A 77 LSNAPDLRFISSHD---NI--LWDDGNASFYGIAQQEL------------------NKLIRRVAISGNWHLVQ--TPSEG 131 (270)
T ss_dssp GGGCCSEEEEEETT---EE--EEECSCGGGGTCCHHHH------------------HHHHHHSCSSSSCEEEE--ECCSS
T ss_pred ccCCCcEEEEEeCC---ce--EEECCCCceeCCCHHHH------------------HHHHhhcccCCceEEEE--eccCC
Confidence 45788888888876 42 23333345666654332 23344444455565432 34566
Q ss_pred CeEEEEEEEEEeecCCCCcEEEEEEEEecCch
Q 019399 104 TPFWMLFKMSLVFGKEDGRATHFVAVQVPIVS 135 (341)
Q Consensus 104 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~Dite 135 (341)
..+++.++.+|+.++.+|+++|++-+......
T Consensus 132 g~~~lLvRr~pIid~~TGEVlG~Ly~gvVLnn 163 (270)
T 3c38_A 132 KSVHILMRRSSLIEAGTGQVVGYLYVGIVLND 163 (270)
T ss_dssp SCEEEEEEEEEECCCC-CCCCEEEEEEEECTT
T ss_pred CceEEEEEccceecCCCCcEEEEEEEEEEecC
Confidence 77788899999988679999998766665443
No 140
>3e4o_A C4-dicarboxylate transport sensor protein DCTB; PAS domain, N-TERM helical dimerization domain, transferase; 2.30A {Sinorhizobium meliloti} PDB: 3e4p_A 3e4q_A 2zbb_A
Probab=25.83 E-value=2.8e+02 Score=22.80 Aligned_cols=86 Identities=15% Similarity=0.049 Sum_probs=46.6
Q ss_pred CCeEEEEcCCCCCccEEEecHHHHHhcCCChhhhcCCCCCcccCCCCCHHHHHHHHHHHHcCCCcEEEEEEEcCCCCeEE
Q 019399 28 PDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFW 107 (341)
Q Consensus 28 ~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~~~~ 107 (341)
-..+++.|.+ |.++..+.. -.+....|... ... ..+.+++..+.... ...-...|. +
T Consensus 113 ~~~i~v~d~~---G~viass~~------~~p~~~~g~d~------~~R----~yf~~Al~g~~~~~--~~~~~~tg~--~ 169 (305)
T 3e4o_A 113 AAVIYLIDRS---GVAVAASNW------QEPTSFVGNDY------AFR----DYFRLAVRDGMAEH--FAMGTVSKR--P 169 (305)
T ss_dssp CSEEEEEETT---SBEEEETTT------TSTTCCTTCBC------TTS----HHHHHHHHHSEEEE--EEECTTTCC--E
T ss_pred ccEEEEECCC---CCEEEeCCC------cCcccccCCCc------ccc----HHHHHHHhcCCcEE--EEEecCCCC--E
Confidence 3478999999 988865431 01111223221 111 23344444432211 122222344 4
Q ss_pred EEEEEEEeecCCCCcEEEEEEEEecCchhhh
Q 019399 108 MLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (341)
Q Consensus 108 ~~~~~~~~~~~~~g~~~~~~~~~~Dite~k~ 138 (341)
......|+++ +|+++|++++..|+....+
T Consensus 170 ~i~~a~PV~~--~G~viGVv~v~i~l~~l~~ 198 (305)
T 3e4o_A 170 GLYISRRVDG--PGGPLGVIVAKLEFDGVEA 198 (305)
T ss_dssp EEEEEEEEEE--TTEEEEEEEEEECCHHHHH
T ss_pred EEEEEEEEcc--CCeEEEEEEEEEcHHHHHH
Confidence 4556788887 6999999999888876544
No 141
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Probab=24.71 E-value=26 Score=31.71 Aligned_cols=40 Identities=15% Similarity=0.129 Sum_probs=32.0
Q ss_pred EEEEcCCCCCccEEEecHHHHHhcCCChhhhcCCCCCcccCC
Q 019399 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGP 72 (341)
Q Consensus 31 i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~ 72 (341)
+++++.. +++|+.++.++..++|.++++++|++...+..+
T Consensus 32 LLal~~~--~~~I~~~S~N~~~~lg~~~~~llG~~l~~ll~~ 71 (520)
T 3zq5_A 32 VVVLQEP--DLTISQISANCTGILGRSPEDLLGRTLGEVFDS 71 (520)
T ss_dssp EEEEETT--TTEEEEEETTHHHHHSCCHHHHTTSBHHHHCEE
T ss_pred EEEEECC--CCEEEEEcccHHHHhCcChHHHcCCCHHHHcCH
Confidence 4566653 389999999999999999999999986665543
Done!