Query 019400
Match_columns 341
No_of_seqs 194 out of 709
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 09:10:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019400.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019400hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00338 BRLZ basic region l 99.3 9.5E-12 2.1E-16 94.5 9.4 61 260-320 3-63 (65)
2 PF00170 bZIP_1: bZIP transcri 99.3 1.5E-11 3.3E-16 93.3 9.1 62 259-320 2-63 (64)
3 KOG4005 Transcription factor X 99.2 1.1E-10 2.4E-15 110.4 11.1 77 259-335 66-142 (292)
4 KOG4343 bZIP transcription fac 99.2 5.6E-11 1.2E-15 122.0 8.1 71 255-325 274-344 (655)
5 KOG0709 CREB/ATF family transc 99.2 3.9E-11 8.5E-16 121.4 6.6 75 256-337 245-319 (472)
6 KOG3584 cAMP response element 99.0 6.7E-10 1.4E-14 107.5 7.3 62 254-315 283-344 (348)
7 PF07716 bZIP_2: Basic region 99.0 2.7E-09 5.8E-14 78.9 8.7 51 260-311 3-53 (54)
8 PF03131 bZIP_Maf: bZIP Maf tr 98.0 9.4E-08 2E-12 77.7 -6.2 55 259-313 27-81 (92)
9 KOG0837 Transcriptional activa 97.9 4.3E-05 9.2E-10 73.6 8.5 49 262-310 206-254 (279)
10 KOG4571 Activating transcripti 97.4 0.0023 4.9E-08 62.7 12.6 64 260-330 224-288 (294)
11 KOG4196 bZIP transcription fac 96.8 0.013 2.8E-07 51.7 9.8 40 261-300 52-91 (135)
12 KOG3119 Basic region leucine z 96.6 0.0086 1.9E-07 57.6 8.6 47 266-312 198-244 (269)
13 KOG3863 bZIP transcription fac 96.1 0.011 2.5E-07 62.7 6.7 67 261-334 489-555 (604)
14 PF02183 HALZ: Homeobox associ 95.4 0.065 1.4E-06 39.1 6.1 43 294-336 2-44 (45)
15 PF06005 DUF904: Protein of un 95.1 0.19 4E-06 40.0 8.5 52 283-334 4-62 (72)
16 PF06156 DUF972: Protein of un 94.7 0.18 3.9E-06 42.8 8.0 47 284-330 9-55 (107)
17 PF06156 DUF972: Protein of un 94.6 0.19 4.1E-06 42.7 7.9 51 287-337 5-55 (107)
18 PRK13169 DNA replication intia 94.6 0.18 4E-06 43.2 7.8 47 284-330 9-55 (110)
19 TIGR02449 conserved hypothetic 94.6 0.27 5.9E-06 38.7 8.1 49 286-334 3-51 (65)
20 COG3074 Uncharacterized protei 94.3 0.28 6E-06 39.6 7.7 51 284-334 19-69 (79)
21 PRK13169 DNA replication intia 94.2 0.27 5.9E-06 42.1 8.0 51 286-336 4-54 (110)
22 COG4467 Regulator of replicati 93.8 0.32 7E-06 42.0 7.7 49 288-336 6-54 (114)
23 PRK13729 conjugal transfer pil 93.7 0.19 4.2E-06 52.4 7.2 51 283-333 76-126 (475)
24 PRK10884 SH3 domain-containing 93.6 0.53 1.1E-05 44.1 9.4 44 282-325 124-167 (206)
25 PRK10884 SH3 domain-containing 93.4 1.4 2.9E-05 41.4 11.8 56 281-336 116-171 (206)
26 PF14197 Cep57_CLD_2: Centroso 93.4 0.75 1.6E-05 36.3 8.5 53 282-334 11-63 (69)
27 PF06005 DUF904: Protein of un 93.3 0.87 1.9E-05 36.3 8.8 52 283-334 18-69 (72)
28 PF08614 ATG16: Autophagy prot 93.2 2.1 4.7E-05 38.9 12.4 73 259-331 113-185 (194)
29 PRK15422 septal ring assembly 92.8 0.69 1.5E-05 37.8 7.7 51 285-335 20-70 (79)
30 TIGR02449 conserved hypothetic 92.4 1.3 2.8E-05 34.9 8.5 54 283-336 7-60 (65)
31 PF07989 Microtub_assoc: Micro 92.3 0.89 1.9E-05 36.4 7.7 51 285-335 2-60 (75)
32 PF10224 DUF2205: Predicted co 89.9 2.4 5.1E-05 34.7 8.1 47 285-331 18-64 (80)
33 PF11559 ADIP: Afadin- and alp 89.3 8.5 0.00018 33.4 11.7 63 261-323 44-106 (151)
34 PF11559 ADIP: Afadin- and alp 87.6 5.8 0.00013 34.4 9.6 52 282-333 72-123 (151)
35 PRK11637 AmiB activator; Provi 87.5 8.7 0.00019 38.8 12.1 58 277-334 69-126 (428)
36 PF14197 Cep57_CLD_2: Centroso 87.4 3.5 7.6E-05 32.6 7.3 49 284-332 20-68 (69)
37 TIGR02894 DNA_bind_RsfA transc 87.3 2.6 5.6E-05 38.6 7.4 27 297-323 104-130 (161)
38 PF12808 Mto2_bdg: Micro-tubul 87.2 1.7 3.7E-05 32.9 5.2 51 280-333 1-51 (52)
39 PF13851 GAS: Growth-arrest sp 87.1 14 0.0003 34.4 12.2 59 259-317 69-127 (201)
40 PF07888 CALCOCO1: Calcium bin 87.0 9.1 0.0002 41.0 12.3 74 262-335 150-223 (546)
41 TIGR00219 mreC rod shape-deter 86.8 2.1 4.5E-05 41.6 7.0 43 291-336 67-109 (283)
42 PF06785 UPF0242: Uncharacteri 86.8 2.6 5.6E-05 42.9 7.7 67 266-332 109-176 (401)
43 PF12325 TMF_TATA_bd: TATA ele 86.8 11 0.00025 32.7 10.7 71 265-335 40-113 (120)
44 COG4467 Regulator of replicati 86.3 3 6.6E-05 36.1 6.9 47 283-329 8-54 (114)
45 PRK00888 ftsB cell division pr 86.1 3.6 7.7E-05 34.7 7.2 33 279-311 30-62 (105)
46 KOG1414 Transcriptional activa 85.4 0.044 9.6E-07 55.3 -5.4 56 256-311 148-207 (395)
47 smart00340 HALZ homeobox assoc 85.4 1.8 4E-05 31.8 4.4 27 307-333 8-34 (44)
48 PF07106 TBPIP: Tat binding pr 85.2 4.5 9.8E-05 35.8 7.8 50 283-332 86-137 (169)
49 PF05266 DUF724: Protein of un 85.1 9.6 0.00021 35.3 10.1 78 260-337 87-178 (190)
50 PF02183 HALZ: Homeobox associ 85.0 2.6 5.6E-05 30.8 5.1 34 302-335 3-36 (45)
51 PF15294 Leu_zip: Leucine zipp 84.9 3.6 7.9E-05 40.5 7.6 45 288-332 130-174 (278)
52 KOG4005 Transcription factor X 84.9 9.7 0.00021 37.3 10.3 81 258-338 69-152 (292)
53 PF08826 DMPK_coil: DMPK coile 84.5 7.9 0.00017 30.1 7.8 46 288-333 16-61 (61)
54 PRK11637 AmiB activator; Provi 84.5 15 0.00033 37.1 12.1 55 281-335 66-120 (428)
55 PF09304 Cortex-I_coil: Cortex 84.4 10 0.00022 32.7 9.2 60 260-319 14-73 (107)
56 PRK15422 septal ring assembly 84.3 7.1 0.00015 32.0 7.8 49 284-332 5-60 (79)
57 PF08614 ATG16: Autophagy prot 84.1 4.4 9.5E-05 36.9 7.4 56 279-334 126-181 (194)
58 PRK02119 hypothetical protein; 83.9 9 0.00019 30.4 8.1 47 283-329 9-55 (73)
59 PRK04406 hypothetical protein; 83.6 10 0.00022 30.3 8.4 50 288-337 9-58 (75)
60 PF04102 SlyX: SlyX; InterPro 83.4 6.7 0.00015 30.5 7.1 50 283-332 4-53 (69)
61 PF10224 DUF2205: Predicted co 83.4 7.4 0.00016 31.8 7.6 55 281-335 6-61 (80)
62 PF13747 DUF4164: Domain of un 83.0 25 0.00054 28.9 11.4 72 259-330 8-79 (89)
63 TIGR03752 conj_TIGR03752 integ 82.2 6.3 0.00014 41.5 8.5 30 284-313 74-103 (472)
64 COG4026 Uncharacterized protei 81.2 11 0.00024 36.8 9.0 48 283-330 142-189 (290)
65 PRK00846 hypothetical protein; 80.7 13 0.00027 30.3 8.0 51 288-338 11-61 (77)
66 PF14662 CCDC155: Coiled-coil 80.7 7 0.00015 36.8 7.4 51 285-335 10-60 (193)
67 PRK13922 rod shape-determining 80.6 7.7 0.00017 36.7 7.9 39 283-325 69-107 (276)
68 PRK04325 hypothetical protein; 80.5 12 0.00026 29.7 7.7 45 284-335 10-54 (74)
69 PF09304 Cortex-I_coil: Cortex 80.3 38 0.00082 29.3 12.1 59 277-335 10-68 (107)
70 KOG1962 B-cell receptor-associ 80.1 19 0.00042 34.4 10.3 55 282-336 157-211 (216)
71 PF07926 TPR_MLP1_2: TPR/MLP1/ 80.1 26 0.00057 30.1 10.3 34 297-330 98-131 (132)
72 PHA03162 hypothetical protein; 80.0 5.1 0.00011 35.8 5.9 28 279-306 9-36 (135)
73 PF04899 MbeD_MobD: MbeD/MobD 79.8 19 0.00042 28.7 8.6 51 286-336 10-60 (70)
74 PF04102 SlyX: SlyX; InterPro 79.7 13 0.00027 29.0 7.5 52 287-338 1-52 (69)
75 PF07106 TBPIP: Tat binding pr 79.6 6.9 0.00015 34.7 6.8 32 280-311 106-137 (169)
76 PRK09039 hypothetical protein; 79.5 8.7 0.00019 38.3 8.2 52 286-337 133-184 (343)
77 PF11932 DUF3450: Protein of u 79.5 22 0.00047 33.5 10.4 47 278-324 51-97 (251)
78 PF12718 Tropomyosin_1: Tropom 79.4 14 0.0003 32.7 8.5 20 287-306 18-37 (143)
79 PF05278 PEARLI-4: Arabidopsis 79.2 35 0.00076 33.7 12.0 54 282-335 206-259 (269)
80 PRK00888 ftsB cell division pr 78.9 5.2 0.00011 33.7 5.5 34 284-317 28-61 (105)
81 PRK02119 hypothetical protein; 78.8 14 0.0003 29.4 7.6 55 284-338 3-57 (73)
82 PRK02793 phi X174 lysis protei 78.7 16 0.00036 28.8 7.9 47 283-336 8-54 (72)
83 KOG2391 Vacuolar sorting prote 78.1 13 0.00027 38.0 8.7 53 284-336 226-278 (365)
84 PHA03155 hypothetical protein; 78.0 12 0.00026 32.7 7.5 26 283-308 8-33 (115)
85 PRK00295 hypothetical protein; 77.7 17 0.00037 28.4 7.7 47 283-329 5-51 (68)
86 PF12325 TMF_TATA_bd: TATA ele 77.7 22 0.00048 30.9 9.1 15 319-333 69-83 (120)
87 PF07798 DUF1640: Protein of u 77.2 13 0.00029 33.4 8.0 49 287-335 48-97 (177)
88 COG3883 Uncharacterized protei 77.1 16 0.00034 36.0 8.9 50 283-332 38-87 (265)
89 PF14662 CCDC155: Coiled-coil 77.1 16 0.00034 34.5 8.5 42 286-327 98-139 (193)
90 PF07888 CALCOCO1: Calcium bin 77.1 27 0.00058 37.6 11.3 37 301-337 421-457 (546)
91 PRK09039 hypothetical protein; 76.9 23 0.0005 35.4 10.2 47 287-333 113-159 (343)
92 KOG1962 B-cell receptor-associ 76.7 9.2 0.0002 36.5 7.0 44 285-328 167-210 (216)
93 KOG0977 Nuclear envelope prote 76.6 14 0.00031 39.6 9.1 66 272-337 130-195 (546)
94 COG2433 Uncharacterized conser 76.3 9.2 0.0002 41.6 7.6 31 284-314 437-467 (652)
95 PF08647 BRE1: BRE1 E3 ubiquit 76.2 42 0.00092 27.6 10.4 65 265-329 6-70 (96)
96 PF10473 CENP-F_leu_zip: Leuci 76.2 58 0.0013 29.1 11.7 48 262-309 31-78 (140)
97 KOG3119 Basic region leucine z 75.6 16 0.00034 35.4 8.5 43 270-312 209-251 (269)
98 PF09755 DUF2046: Uncharacteri 75.5 12 0.00026 37.5 7.8 49 286-334 23-71 (310)
99 PF10146 zf-C4H2: Zinc finger- 75.3 22 0.00048 34.0 9.2 58 283-340 50-111 (230)
100 PF08172 CASP_C: CASP C termin 75.2 12 0.00027 36.0 7.6 42 284-332 94-135 (248)
101 PRK13922 rod shape-determining 74.9 28 0.0006 33.0 9.8 49 286-338 65-113 (276)
102 PRK02793 phi X174 lysis protei 74.5 22 0.00047 28.1 7.6 29 285-313 24-52 (72)
103 smart00338 BRLZ basic region l 74.5 14 0.00031 27.8 6.4 33 292-324 28-60 (65)
104 PF12718 Tropomyosin_1: Tropom 74.5 20 0.00044 31.6 8.2 22 285-306 37-58 (143)
105 PRK10803 tol-pal system protei 74.4 15 0.00033 35.2 8.0 51 284-334 55-105 (263)
106 COG3074 Uncharacterized protei 74.3 23 0.0005 28.9 7.6 43 282-324 24-66 (79)
107 TIGR00219 mreC rod shape-deter 74.3 9.3 0.0002 37.1 6.6 43 283-328 66-108 (283)
108 COG4942 Membrane-bound metallo 74.3 41 0.00088 35.2 11.4 69 262-330 38-106 (420)
109 PF09726 Macoilin: Transmembra 74.0 40 0.00086 37.2 11.9 33 288-320 543-575 (697)
110 TIGR02894 DNA_bind_RsfA transc 73.7 19 0.00041 33.1 8.0 38 280-317 108-145 (161)
111 PF05812 Herpes_BLRF2: Herpesv 73.6 5.7 0.00012 34.7 4.4 28 281-308 1-28 (118)
112 PF10174 Cast: RIM-binding pro 73.5 15 0.00033 40.9 8.7 59 279-337 297-355 (775)
113 COG4026 Uncharacterized protei 73.3 22 0.00047 34.8 8.6 45 286-330 138-182 (290)
114 PF00170 bZIP_1: bZIP transcri 73.3 19 0.00042 27.1 6.8 11 320-330 49-59 (64)
115 PF14915 CCDC144C: CCDC144C pr 73.2 32 0.00069 34.6 10.0 64 271-334 181-244 (305)
116 PF04977 DivIC: Septum formati 73.2 11 0.00024 28.6 5.5 30 280-309 21-50 (80)
117 TIGR02209 ftsL_broad cell divi 72.9 15 0.00033 28.6 6.4 30 280-309 28-57 (85)
118 PRK00295 hypothetical protein; 72.9 30 0.00066 27.1 7.9 50 288-337 3-52 (68)
119 COG1579 Zn-ribbon protein, pos 72.8 41 0.00089 32.6 10.4 52 261-312 30-81 (239)
120 PF15035 Rootletin: Ciliary ro 72.5 22 0.00048 32.8 8.2 53 283-335 67-119 (182)
121 PF03962 Mnd1: Mnd1 family; I 72.2 30 0.00064 31.9 9.0 15 282-296 82-96 (188)
122 PF04111 APG6: Autophagy prote 72.0 77 0.0017 31.4 12.4 57 278-334 73-129 (314)
123 PF04340 DUF484: Protein of un 71.8 16 0.00035 33.8 7.3 49 284-336 41-89 (225)
124 PF04880 NUDE_C: NUDE protein, 71.7 5.7 0.00012 36.4 4.2 23 285-307 2-24 (166)
125 KOG1414 Transcriptional activa 71.6 0.82 1.8E-05 46.3 -1.4 44 260-303 283-326 (395)
126 PF07407 Seadorna_VP6: Seadorn 71.3 7.3 0.00016 39.7 5.2 23 294-316 36-58 (420)
127 PHA02562 46 endonuclease subun 71.3 51 0.0011 33.8 11.4 42 285-326 360-401 (562)
128 PF10805 DUF2730: Protein of u 71.2 28 0.0006 29.2 7.9 30 283-312 49-80 (106)
129 PF04977 DivIC: Septum formati 71.1 13 0.00029 28.1 5.5 27 304-330 24-50 (80)
130 PF09738 DUF2051: Double stran 70.9 74 0.0016 31.7 12.0 76 256-331 86-167 (302)
131 PF05837 CENP-H: Centromere pr 70.7 18 0.0004 30.3 6.7 53 283-336 17-69 (106)
132 PRK04325 hypothetical protein; 70.5 31 0.00066 27.5 7.6 23 288-310 28-50 (74)
133 PF10482 CtIP_N: Tumour-suppre 70.5 32 0.0007 30.2 8.2 62 275-336 6-67 (120)
134 PRK00736 hypothetical protein; 70.5 35 0.00075 26.7 7.8 47 283-336 5-51 (68)
135 PF05103 DivIVA: DivIVA protei 70.2 2.6 5.5E-05 35.2 1.5 45 283-327 25-69 (131)
136 PF00038 Filament: Intermediat 70.2 68 0.0015 30.6 11.3 39 295-333 214-252 (312)
137 PF12711 Kinesin-relat_1: Kine 70.1 21 0.00045 29.7 6.7 23 312-334 45-67 (86)
138 PF08317 Spc7: Spc7 kinetochor 70.0 96 0.0021 30.6 12.6 51 285-335 151-201 (325)
139 PRK04406 hypothetical protein; 69.9 31 0.00067 27.6 7.5 50 283-332 11-60 (75)
140 COG3879 Uncharacterized protei 69.4 28 0.00061 34.0 8.5 51 287-340 61-111 (247)
141 PF08317 Spc7: Spc7 kinetochor 69.2 24 0.00052 34.7 8.2 7 70-76 16-22 (325)
142 PF04156 IncA: IncA protein; 68.9 85 0.0018 27.9 12.1 60 270-329 117-176 (191)
143 PF07716 bZIP_2: Basic region 68.5 15 0.00032 27.0 5.1 29 304-332 25-53 (54)
144 PRK00736 hypothetical protein; 68.2 39 0.00085 26.4 7.7 29 286-314 22-50 (68)
145 PF00038 Filament: Intermediat 68.2 1.1E+02 0.0024 29.2 12.3 50 286-335 258-307 (312)
146 PF11365 DUF3166: Protein of u 67.8 24 0.00051 29.9 6.7 32 304-335 15-46 (96)
147 PF12329 TMF_DNA_bd: TATA elem 67.6 56 0.0012 25.9 8.5 36 302-337 38-73 (74)
148 KOG0982 Centrosomal protein Nu 67.4 67 0.0015 34.0 11.2 52 284-335 298-349 (502)
149 PF01166 TSC22: TSC-22/dip/bun 67.3 7.4 0.00016 30.4 3.3 25 302-326 19-43 (59)
150 PF09744 Jnk-SapK_ap_N: JNK_SA 67.2 17 0.00036 33.0 6.2 47 286-332 92-138 (158)
151 KOG0946 ER-Golgi vesicle-tethe 67.2 56 0.0012 37.1 11.1 55 281-335 662-716 (970)
152 PF08172 CASP_C: CASP C termin 67.1 24 0.00053 34.0 7.6 48 262-310 87-134 (248)
153 TIGR02169 SMC_prok_A chromosom 66.8 73 0.0016 35.3 12.1 11 68-78 120-130 (1164)
154 PF09789 DUF2353: Uncharacteri 66.8 46 0.00099 33.6 9.7 48 286-333 68-115 (319)
155 KOG2077 JNK/SAPK-associated pr 66.8 16 0.00035 39.9 6.8 52 286-337 325-376 (832)
156 PF06810 Phage_GP20: Phage min 66.7 29 0.00063 31.1 7.5 36 279-314 30-68 (155)
157 PF09730 BicD: Microtubule-ass 66.1 22 0.00047 39.4 7.9 47 285-331 71-117 (717)
158 PF10211 Ax_dynein_light: Axon 65.9 72 0.0016 29.4 10.1 35 285-319 122-156 (189)
159 PF05529 Bap31: B-cell recepto 65.7 56 0.0012 29.4 9.3 39 295-333 152-190 (192)
160 KOG0250 DNA repair protein RAD 65.5 62 0.0013 37.5 11.3 58 278-335 367-425 (1074)
161 PF10186 Atg14: UV radiation r 65.3 1.1E+02 0.0024 28.3 11.5 43 283-325 63-105 (302)
162 TIGR02977 phageshock_pspA phag 65.3 44 0.00094 31.1 8.7 55 282-336 98-152 (219)
163 KOG0250 DNA repair protein RAD 65.2 37 0.00081 39.2 9.6 70 266-335 362-432 (1074)
164 PF04999 FtsL: Cell division p 65.1 21 0.00046 28.7 5.9 33 298-330 36-68 (97)
165 PLN02939 transferase, transfer 65.1 1.8E+02 0.0039 33.7 14.8 27 309-335 224-250 (977)
166 PF12777 MT: Microtubule-bindi 65.0 32 0.0007 34.0 8.2 53 285-337 230-282 (344)
167 PRK10963 hypothetical protein; 64.9 27 0.00058 32.7 7.3 43 288-334 42-84 (223)
168 PF07558 Shugoshin_N: Shugoshi 64.7 7.7 0.00017 28.4 2.9 35 293-327 10-44 (46)
169 COG4942 Membrane-bound metallo 64.4 65 0.0014 33.7 10.5 37 284-320 74-110 (420)
170 PF07558 Shugoshin_N: Shugoshi 64.2 8 0.00017 28.3 2.9 41 265-306 4-44 (46)
171 TIGR03752 conj_TIGR03752 integ 64.0 18 0.00038 38.3 6.4 26 309-334 114-139 (472)
172 PF11180 DUF2968: Protein of u 63.9 1.3E+02 0.0029 28.4 12.3 77 258-335 102-178 (192)
173 PF05837 CENP-H: Centromere pr 63.9 35 0.00075 28.7 7.1 25 300-324 54-78 (106)
174 PRK05892 nucleoside diphosphat 63.9 41 0.00089 30.2 8.0 56 284-339 12-75 (158)
175 PF05700 BCAS2: Breast carcino 63.1 42 0.00092 31.4 8.2 16 143-158 22-37 (221)
176 KOG3335 Predicted coiled-coil 63.1 17 0.00038 33.9 5.5 46 259-310 88-133 (181)
177 PF04156 IncA: IncA protein; 62.9 51 0.0011 29.3 8.4 18 292-309 132-149 (191)
178 PF05266 DUF724: Protein of un 62.8 1.2E+02 0.0027 28.1 11.1 58 277-334 125-182 (190)
179 PF03980 Nnf1: Nnf1 ; InterPr 62.7 13 0.00028 30.8 4.2 30 281-310 78-107 (109)
180 PF15070 GOLGA2L5: Putative go 62.5 90 0.0019 34.0 11.5 56 268-323 107-186 (617)
181 KOG1103 Predicted coiled-coil 62.4 40 0.00086 35.1 8.4 66 271-336 226-291 (561)
182 PF06785 UPF0242: Uncharacteri 62.4 84 0.0018 32.4 10.5 70 261-334 74-157 (401)
183 PF10211 Ax_dynein_light: Axon 62.3 1.2E+02 0.0026 28.0 10.9 37 279-315 123-159 (189)
184 PHA02562 46 endonuclease subun 62.2 1.2E+02 0.0025 31.2 11.9 29 306-334 215-243 (562)
185 PF10506 MCC-bdg_PDZ: PDZ doma 62.1 41 0.00088 26.7 6.7 49 287-335 2-50 (67)
186 PF04111 APG6: Autophagy prote 61.7 1.2E+02 0.0026 30.1 11.4 66 266-331 68-133 (314)
187 PF09789 DUF2353: Uncharacteri 61.2 57 0.0012 32.9 9.2 65 273-337 20-98 (319)
188 PF04849 HAP1_N: HAP1 N-termin 61.0 50 0.0011 33.1 8.7 22 141-162 94-115 (306)
189 PRK10698 phage shock protein P 60.9 72 0.0016 30.0 9.4 53 285-337 101-153 (222)
190 PF12711 Kinesin-relat_1: Kine 60.1 61 0.0013 27.0 7.7 41 292-334 46-86 (86)
191 TIGR02209 ftsL_broad cell divi 60.1 33 0.00072 26.7 6.0 35 297-331 24-58 (85)
192 PRK10803 tol-pal system protei 60.0 63 0.0014 31.1 9.0 44 279-322 57-100 (263)
193 PF12709 Kinetocho_Slk19: Cent 59.9 46 0.00099 27.8 6.9 7 290-296 34-40 (87)
194 PF01166 TSC22: TSC-22/dip/bun 59.8 16 0.00034 28.6 3.9 22 283-304 21-42 (59)
195 KOG0995 Centromere-associated 59.8 70 0.0015 34.7 10.0 57 284-340 274-330 (581)
196 PRK13729 conjugal transfer pil 59.8 42 0.0009 35.6 8.2 50 285-334 71-120 (475)
197 PF05377 FlaC_arch: Flagella a 59.6 37 0.0008 26.2 5.9 24 287-310 11-34 (55)
198 COG1579 Zn-ribbon protein, pos 59.3 95 0.002 30.2 10.0 56 280-335 86-141 (239)
199 PF13863 DUF4200: Domain of un 59.0 1E+02 0.0022 25.5 9.6 49 263-311 61-109 (126)
200 KOG3156 Uncharacterized membra 59.0 50 0.0011 31.8 7.9 39 297-335 101-140 (220)
201 KOG1318 Helix loop helix trans 58.7 68 0.0015 33.5 9.4 79 259-337 226-323 (411)
202 COG1792 MreC Cell shape-determ 58.5 31 0.00066 33.7 6.7 12 314-325 93-104 (284)
203 PRK00846 hypothetical protein; 58.3 74 0.0016 25.9 7.7 53 282-334 12-64 (77)
204 PF08826 DMPK_coil: DMPK coile 58.0 65 0.0014 25.1 7.1 42 294-335 15-56 (61)
205 TIGR01461 greB transcription e 57.9 40 0.00086 30.2 6.8 54 286-339 11-73 (156)
206 PF14988 DUF4515: Domain of un 57.8 1.1E+02 0.0023 28.8 9.9 50 285-334 151-200 (206)
207 PF10805 DUF2730: Protein of u 57.8 96 0.0021 26.0 8.7 51 283-333 35-87 (106)
208 PF01486 K-box: K-box region; 57.8 38 0.00083 27.6 6.2 31 298-328 69-99 (100)
209 KOG4403 Cell surface glycoprot 57.8 60 0.0013 34.5 8.9 75 260-338 240-322 (575)
210 PF13815 Dzip-like_N: Iguana/D 57.7 42 0.00091 28.4 6.6 40 295-334 78-117 (118)
211 PF04642 DUF601: Protein of un 57.5 12 0.00027 36.9 3.7 53 283-335 217-269 (311)
212 COG3883 Uncharacterized protei 57.4 62 0.0013 31.9 8.5 32 281-312 57-88 (265)
213 KOG4797 Transcriptional regula 57.0 25 0.00055 30.7 5.1 14 311-324 81-94 (123)
214 KOG0804 Cytoplasmic Zn-finger 57.0 1.3E+02 0.0029 32.0 11.2 69 267-335 369-445 (493)
215 PF13815 Dzip-like_N: Iguana/D 56.9 91 0.002 26.4 8.5 40 288-327 78-117 (118)
216 PF05600 DUF773: Protein of un 56.9 60 0.0013 34.4 8.9 56 280-335 443-499 (507)
217 KOG0288 WD40 repeat protein Ti 56.6 1.4E+02 0.0031 31.5 11.2 27 282-308 47-73 (459)
218 PF14645 Chibby: Chibby family 56.4 42 0.0009 29.0 6.4 40 288-327 76-115 (116)
219 KOG3650 Predicted coiled-coil 56.3 54 0.0012 28.4 6.9 29 302-330 75-103 (120)
220 KOG4343 bZIP transcription fac 56.2 50 0.0011 35.8 8.2 31 301-331 306-336 (655)
221 KOG3650 Predicted coiled-coil 55.8 41 0.00088 29.1 6.1 38 282-319 69-106 (120)
222 PF05335 DUF745: Protein of un 55.7 83 0.0018 29.4 8.7 59 279-337 63-121 (188)
223 PF06548 Kinesin-related: Kine 55.5 40 0.00086 35.7 7.2 43 294-336 407-473 (488)
224 KOG0709 CREB/ATF family transc 55.5 35 0.00076 36.1 6.8 55 256-310 249-313 (472)
225 PF07200 Mod_r: Modifier of ru 55.4 1.3E+02 0.0028 26.0 9.4 69 266-336 39-107 (150)
226 COG1196 Smc Chromosome segrega 55.3 1.3E+02 0.0027 34.8 11.8 54 283-336 439-492 (1163)
227 PF15035 Rootletin: Ciliary ro 55.1 67 0.0015 29.6 8.0 28 288-315 86-113 (182)
228 PF04849 HAP1_N: HAP1 N-termin 54.9 61 0.0013 32.6 8.1 22 302-323 239-260 (306)
229 PF10828 DUF2570: Protein of u 54.8 1.3E+02 0.0028 25.3 10.0 53 285-337 34-86 (110)
230 PF12329 TMF_DNA_bd: TATA elem 54.7 1.1E+02 0.0023 24.3 8.5 49 283-331 12-60 (74)
231 PF09728 Taxilin: Myosin-like 54.6 70 0.0015 31.7 8.5 52 284-335 245-296 (309)
232 KOG4196 bZIP transcription fac 54.4 57 0.0012 29.3 7.0 36 293-335 77-112 (135)
233 PF13118 DUF3972: Protein of u 54.4 45 0.00098 29.6 6.4 47 284-330 79-125 (126)
234 KOG1319 bHLHZip transcription 54.3 1.1E+02 0.0023 29.4 9.1 72 260-331 56-139 (229)
235 PF06216 RTBV_P46: Rice tungro 53.9 75 0.0016 31.8 8.4 25 285-309 80-104 (389)
236 COG2433 Uncharacterized conser 53.8 1.1E+02 0.0024 33.7 10.2 25 285-309 424-448 (652)
237 PF09726 Macoilin: Transmembra 53.3 1.5E+02 0.0033 32.8 11.5 19 291-309 461-479 (697)
238 PF05667 DUF812: Protein of un 53.1 79 0.0017 34.3 9.2 45 284-328 336-380 (594)
239 PF04012 PspA_IM30: PspA/IM30 53.0 1.3E+02 0.0028 27.5 9.5 53 285-337 100-152 (221)
240 PF04728 LPP: Lipoprotein leuc 53.0 1.1E+02 0.0023 23.8 8.7 37 283-319 3-39 (56)
241 cd07596 BAR_SNX The Bin/Amphip 52.9 1.6E+02 0.0034 25.8 11.0 64 264-330 112-182 (218)
242 PHA03011 hypothetical protein; 52.8 1E+02 0.0022 26.8 8.1 53 283-335 64-116 (120)
243 KOG0999 Microtubule-associated 52.7 1.2E+02 0.0027 33.2 10.4 44 291-334 171-217 (772)
244 KOG4643 Uncharacterized coiled 52.5 53 0.0012 38.0 8.0 46 287-332 513-558 (1195)
245 KOG0288 WD40 repeat protein Ti 52.3 1.1E+02 0.0024 32.3 9.7 40 289-328 33-72 (459)
246 PTZ00454 26S protease regulato 52.3 60 0.0013 33.1 7.8 37 288-331 27-63 (398)
247 TIGR01843 type_I_hlyD type I s 52.2 1.2E+02 0.0027 29.4 9.7 20 141-160 75-97 (423)
248 PF06428 Sec2p: GDP/GTP exchan 52.2 1.3E+02 0.0028 25.5 8.6 13 317-329 50-62 (100)
249 PLN03188 kinesin-12 family pro 52.1 38 0.00083 39.8 7.0 44 292-335 1175-1242(1320)
250 PF13805 Pil1: Eisosome compon 51.9 1.1E+02 0.0023 30.4 9.1 71 260-335 125-197 (271)
251 KOG1853 LIS1-interacting prote 51.5 2E+02 0.0044 28.8 10.9 20 315-334 95-114 (333)
252 PF15619 Lebercilin: Ciliary p 51.4 1.2E+02 0.0027 28.2 9.1 39 298-336 151-189 (194)
253 COG1792 MreC Cell shape-determ 50.9 49 0.0011 32.3 6.7 39 296-338 72-110 (284)
254 PF14817 HAUS5: HAUS augmin-li 50.5 92 0.002 34.1 9.3 23 285-307 102-124 (632)
255 TIGR02231 conserved hypothetic 49.8 1.8E+02 0.004 30.2 11.0 44 293-336 127-170 (525)
256 PF10473 CENP-F_leu_zip: Leuci 49.7 1.9E+02 0.0042 25.9 11.7 40 288-327 71-110 (140)
257 PF03980 Nnf1: Nnf1 ; InterPr 49.7 37 0.0008 28.0 4.9 32 301-332 77-108 (109)
258 PRK12704 phosphodiesterase; Pr 49.6 2.4E+02 0.0052 30.0 12.0 15 289-303 99-113 (520)
259 KOG0977 Nuclear envelope prote 49.4 72 0.0016 34.5 8.1 34 284-317 163-196 (546)
260 PRK04863 mukB cell division pr 49.4 1.6E+02 0.0035 35.4 11.6 21 261-281 320-340 (1486)
261 COG3352 FlaC Putative archaeal 49.3 97 0.0021 28.5 7.8 56 283-338 79-135 (157)
262 KOG4807 F-actin binding protei 49.0 98 0.0021 32.7 8.7 55 280-334 390-458 (593)
263 PF08537 NBP1: Fungal Nap bind 49.0 1.1E+02 0.0023 31.1 8.8 26 260-285 120-145 (323)
264 KOG0243 Kinesin-like protein [ 48.7 1.3E+02 0.0029 34.9 10.4 69 266-334 414-492 (1041)
265 PF05377 FlaC_arch: Flagella a 48.6 1E+02 0.0023 23.7 6.7 25 285-309 2-26 (55)
266 COG5570 Uncharacterized small 48.6 31 0.00068 26.6 3.9 52 283-334 5-56 (57)
267 PF02403 Seryl_tRNA_N: Seryl-t 48.5 1.5E+02 0.0032 24.2 9.4 19 316-334 72-90 (108)
268 PF15058 Speriolin_N: Sperioli 48.5 38 0.00083 32.1 5.3 26 285-310 7-32 (200)
269 smart00787 Spc7 Spc7 kinetocho 48.5 2.9E+02 0.0063 27.6 12.3 51 285-335 146-196 (312)
270 PF09738 DUF2051: Double stran 47.8 1E+02 0.0022 30.8 8.4 50 286-335 115-164 (302)
271 PF07412 Geminin: Geminin; In 47.7 77 0.0017 30.1 7.2 35 298-332 126-160 (200)
272 PF00261 Tropomyosin: Tropomyo 47.7 1.1E+02 0.0023 28.8 8.2 16 321-336 172-187 (237)
273 PF12709 Kinetocho_Slk19: Cent 47.1 1.5E+02 0.0033 24.8 8.0 40 281-320 40-79 (87)
274 PRK02224 chromosome segregatio 47.1 2.6E+02 0.0056 30.7 12.1 50 286-335 352-401 (880)
275 KOG0933 Structural maintenance 46.8 1.9E+02 0.0042 33.8 11.1 46 292-337 817-862 (1174)
276 PF15369 KIAA1328: Uncharacter 46.8 3.1E+02 0.0068 28.0 11.6 56 258-315 4-65 (328)
277 KOG1029 Endocytic adaptor prot 46.8 2.1E+02 0.0046 32.8 11.2 17 318-334 437-453 (1118)
278 PF10481 CENP-F_N: Cenp-F N-te 46.7 3.2E+02 0.007 27.6 11.8 20 290-309 60-79 (307)
279 PF04136 Sec34: Sec34-like fam 46.6 1.4E+02 0.0029 26.8 8.4 53 283-335 21-73 (157)
280 PF04871 Uso1_p115_C: Uso1 / p 46.6 2E+02 0.0044 25.2 10.5 51 284-334 63-114 (136)
281 PRK01885 greB transcription el 46.1 91 0.002 27.9 7.2 28 312-339 48-75 (157)
282 PRK14127 cell division protein 45.9 82 0.0018 27.1 6.5 16 320-335 87-102 (109)
283 KOG0946 ER-Golgi vesicle-tethe 45.9 1.4E+02 0.003 34.1 9.8 64 265-328 653-716 (970)
284 KOG0980 Actin-binding protein 45.9 2.1E+02 0.0046 32.9 11.2 67 267-333 450-516 (980)
285 KOG0239 Kinesin (KAR3 subfamil 45.6 1.6E+02 0.0034 32.5 10.2 15 318-332 300-314 (670)
286 PF03670 UPF0184: Uncharacteri 45.6 1.3E+02 0.0029 24.9 7.4 41 284-331 34-74 (83)
287 PF00769 ERM: Ezrin/radixin/mo 45.5 2.3E+02 0.0049 27.2 10.2 38 297-334 75-112 (246)
288 PF09744 Jnk-SapK_ap_N: JNK_SA 45.3 2.4E+02 0.0052 25.6 10.9 20 293-312 85-104 (158)
289 PF08606 Prp19: Prp19/Pso4-lik 45.3 46 0.00099 26.8 4.6 32 285-316 10-41 (70)
290 KOG2129 Uncharacterized conser 45.2 35 0.00076 36.0 4.9 47 286-332 46-92 (552)
291 PF14257 DUF4349: Domain of un 45.2 1E+02 0.0022 29.0 7.7 24 316-339 174-197 (262)
292 PF04859 DUF641: Plant protein 45.1 70 0.0015 28.4 6.1 40 286-325 90-129 (131)
293 KOG4360 Uncharacterized coiled 45.1 94 0.002 33.6 8.1 46 284-329 220-265 (596)
294 PF01486 K-box: K-box region; 45.0 1.1E+02 0.0024 24.9 7.0 34 274-307 62-99 (100)
295 PF15030 DUF4527: Protein of u 44.9 3.3E+02 0.0071 27.1 11.2 74 260-333 13-87 (277)
296 PF03449 GreA_GreB_N: Transcri 44.8 1.2E+02 0.0027 24.0 7.0 54 286-339 12-74 (74)
297 KOG0995 Centromere-associated 44.6 77 0.0017 34.5 7.4 48 281-328 278-325 (581)
298 PF11180 DUF2968: Protein of u 44.2 2.3E+02 0.005 26.9 9.7 35 284-318 148-182 (192)
299 PRK14160 heat shock protein Gr 44.1 1.3E+02 0.0028 28.7 8.1 43 285-327 56-98 (211)
300 PF07200 Mod_r: Modifier of ru 43.6 1.7E+02 0.0037 25.2 8.3 51 267-317 32-82 (150)
301 KOG4360 Uncharacterized coiled 43.3 1.2E+02 0.0026 32.9 8.5 58 279-336 194-251 (596)
302 PF05667 DUF812: Protein of un 43.3 1.2E+02 0.0026 32.9 8.8 12 143-154 239-250 (594)
303 PF05622 HOOK: HOOK protein; 43.2 7.9 0.00017 41.9 0.0 63 272-334 314-379 (713)
304 KOG0161 Myosin class II heavy 43.1 2.2E+02 0.0047 35.4 11.5 50 287-336 1481-1537(1930)
305 PF10883 DUF2681: Protein of u 43.0 1.1E+02 0.0024 25.5 6.6 38 289-331 29-66 (87)
306 PRK10361 DNA recombination pro 42.7 4E+02 0.0086 28.5 12.2 28 287-314 64-91 (475)
307 PF14282 FlxA: FlxA-like prote 42.6 1.5E+02 0.0031 24.9 7.5 30 279-308 47-76 (106)
308 PF07798 DUF1640: Protein of u 42.6 2.6E+02 0.0055 25.2 10.0 14 296-309 79-92 (177)
309 KOG1103 Predicted coiled-coil 42.5 1.8E+02 0.0038 30.5 9.3 69 261-332 113-181 (561)
310 PF08738 Gon7: Gon7 family; I 42.3 82 0.0018 27.0 5.9 33 283-315 54-87 (103)
311 PF04728 LPP: Lipoprotein leuc 42.2 1.6E+02 0.0035 22.8 7.8 21 287-307 14-34 (56)
312 KOG4643 Uncharacterized coiled 41.9 1.1E+02 0.0023 35.7 8.3 31 281-311 528-558 (1195)
313 COG1340 Uncharacterized archae 41.7 2.8E+02 0.006 27.9 10.3 74 262-335 26-100 (294)
314 PF07989 Microtub_assoc: Micro 41.4 1.8E+02 0.004 23.2 7.5 29 309-337 41-69 (75)
315 KOG2264 Exostosin EXT1L [Signa 41.4 1.5E+02 0.0033 32.8 9.0 51 283-333 93-143 (907)
316 TIGR01010 BexC_CtrB_KpsE polys 41.4 2.4E+02 0.0052 27.7 9.9 12 141-152 65-76 (362)
317 cd07596 BAR_SNX The Bin/Amphip 41.3 2.3E+02 0.005 24.8 8.9 26 305-330 146-171 (218)
318 COG2900 SlyX Uncharacterized p 41.2 1.9E+02 0.0042 23.5 8.0 45 284-335 9-53 (72)
319 PRK14127 cell division protein 41.2 90 0.002 26.9 6.1 22 284-305 31-52 (109)
320 PF10205 KLRAQ: Predicted coil 41.1 2.3E+02 0.0051 24.3 8.7 30 284-313 41-70 (102)
321 cd07666 BAR_SNX7 The Bin/Amphi 41.0 1.6E+02 0.0035 28.5 8.5 57 265-331 152-208 (243)
322 cd07429 Cby_like Chibby, a nuc 41.0 62 0.0013 28.0 5.0 23 288-310 77-99 (108)
323 PF07047 OPA3: Optic atrophy 3 40.9 58 0.0013 28.4 5.0 40 258-303 93-132 (134)
324 PF11544 Spc42p: Spindle pole 40.5 72 0.0016 26.1 5.1 47 286-332 8-54 (76)
325 PF03234 CDC37_N: Cdc37 N term 40.3 2.1E+02 0.0045 26.6 8.7 30 281-310 44-73 (177)
326 PF05700 BCAS2: Breast carcino 40.1 2E+02 0.0043 26.9 8.8 17 317-333 195-211 (221)
327 TIGR01462 greA transcription e 40.1 1.4E+02 0.003 26.2 7.3 27 313-339 44-70 (151)
328 KOG4571 Activating transcripti 39.8 2.2E+02 0.0047 28.7 9.2 59 258-316 227-288 (294)
329 PF09325 Vps5: Vps5 C terminal 39.7 2.9E+02 0.0062 25.0 9.8 62 266-330 132-200 (236)
330 PRK11546 zraP zinc resistance 39.6 1.5E+02 0.0032 26.8 7.4 22 311-332 89-110 (143)
331 PF15397 DUF4618: Domain of un 39.6 3.8E+02 0.0083 26.4 11.5 48 288-335 177-224 (258)
332 PF11500 Cut12: Spindle pole b 39.5 2.5E+02 0.0054 25.7 8.9 56 259-314 81-136 (152)
333 PF09727 CortBP2: Cortactin-bi 39.4 3.4E+02 0.0073 25.7 10.2 73 261-335 93-179 (192)
334 COG1340 Uncharacterized archae 39.4 4.1E+02 0.009 26.7 12.2 48 286-333 30-77 (294)
335 COG3159 Uncharacterized protei 39.2 1.1E+02 0.0023 29.6 6.8 52 286-337 55-109 (218)
336 PF06419 COG6: Conserved oligo 39.0 3.5E+02 0.0076 29.3 11.4 55 282-336 44-98 (618)
337 PF09730 BicD: Microtubule-ass 39.0 1.4E+02 0.003 33.4 8.5 45 288-332 46-90 (717)
338 PRK10722 hypothetical protein; 38.8 2.1E+02 0.0045 28.2 8.8 63 259-323 141-209 (247)
339 COG1196 Smc Chromosome segrega 38.8 3.1E+02 0.0066 31.8 11.5 7 73-79 160-166 (1163)
340 PRK00106 hypothetical protein; 38.6 4.5E+02 0.0097 28.4 12.0 18 289-306 114-131 (535)
341 PRK03992 proteasome-activating 38.5 1E+02 0.0022 31.0 7.0 37 287-323 12-48 (389)
342 TIGR00606 rad50 rad50. This fa 38.4 3.2E+02 0.0069 32.1 11.7 37 298-334 1055-1091(1311)
343 PF03245 Phage_lysis: Bacterio 38.2 2.6E+02 0.0057 24.1 9.1 25 309-333 40-64 (125)
344 PF08232 Striatin: Striatin fa 38.2 2.3E+02 0.0049 24.8 8.3 49 266-314 15-63 (134)
345 PF07767 Nop53: Nop53 (60S rib 38.1 1.6E+02 0.0035 29.6 8.3 33 261-293 275-307 (387)
346 COG2919 Septum formation initi 37.8 2.6E+02 0.0055 23.8 9.8 15 262-276 21-35 (117)
347 PF13942 Lipoprotein_20: YfhG 37.8 1.6E+02 0.0035 27.6 7.5 50 272-323 114-163 (179)
348 KOG0243 Kinesin-like protein [ 37.7 3.2E+02 0.007 31.9 11.2 37 301-337 480-516 (1041)
349 PF05529 Bap31: B-cell recepto 37.6 2E+02 0.0044 25.9 8.1 26 284-309 162-187 (192)
350 PRK14872 rod shape-determining 37.5 96 0.0021 31.5 6.6 39 284-326 58-96 (337)
351 PF06632 XRCC4: DNA double-str 37.5 1.4E+02 0.003 30.4 7.7 13 141-153 62-74 (342)
352 PF05911 DUF869: Plant protein 37.3 3.7E+02 0.0081 30.3 11.5 53 282-334 91-164 (769)
353 PF08912 Rho_Binding: Rho Bind 37.2 1.5E+02 0.0033 23.8 6.4 33 288-320 1-33 (69)
354 PF11382 DUF3186: Protein of u 37.1 1E+02 0.0022 30.3 6.6 32 283-314 32-63 (308)
355 PF06216 RTBV_P46: Rice tungro 37.1 2E+02 0.0043 28.9 8.4 53 283-335 64-116 (389)
356 KOG4674 Uncharacterized conser 37.0 1.7E+02 0.0037 36.0 9.3 60 275-334 1235-1294(1822)
357 PF07047 OPA3: Optic atrophy 3 36.8 78 0.0017 27.6 5.2 35 276-310 98-132 (134)
358 PF04899 MbeD_MobD: MbeD/MobD 36.7 2.2E+02 0.0048 22.7 7.8 38 296-333 27-64 (70)
359 PTZ00454 26S protease regulato 36.7 99 0.0021 31.6 6.6 29 284-312 30-58 (398)
360 PF00261 Tropomyosin: Tropomyo 36.6 3.6E+02 0.0079 25.3 12.4 53 282-334 168-220 (237)
361 PF13874 Nup54: Nucleoporin co 36.4 2.9E+02 0.0063 24.1 8.7 51 285-335 67-124 (141)
362 TIGR03545 conserved hypothetic 36.3 1.5E+02 0.0033 31.8 8.2 39 260-298 165-206 (555)
363 TIGR03185 DNA_S_dndD DNA sulfu 36.2 2.3E+02 0.0049 30.5 9.5 8 70-77 67-74 (650)
364 PF10168 Nup88: Nuclear pore c 36.2 4.1E+02 0.0089 29.6 11.6 22 285-306 581-602 (717)
365 COG4985 ABC-type phosphate tra 36.0 1.5E+02 0.0033 29.3 7.4 54 261-314 184-238 (289)
366 PF09325 Vps5: Vps5 C terminal 35.9 3.3E+02 0.0072 24.6 9.5 15 144-158 31-45 (236)
367 KOG3341 RNA polymerase II tran 35.6 1.6E+02 0.0035 28.8 7.4 55 286-340 25-79 (249)
368 PRK10920 putative uroporphyrin 35.5 3.1E+02 0.0066 28.4 9.9 44 287-330 96-141 (390)
369 KOG1029 Endocytic adaptor prot 35.3 3.7E+02 0.0081 30.9 10.9 24 312-335 438-461 (1118)
370 PF06210 DUF1003: Protein of u 35.0 1.8E+02 0.0039 24.8 7.0 47 269-320 57-103 (108)
371 TIGR02231 conserved hypothetic 35.0 4.3E+02 0.0094 27.5 11.1 42 289-330 130-171 (525)
372 PF10226 DUF2216: Uncharacteri 34.8 3.3E+02 0.0071 26.0 9.1 60 258-317 19-82 (195)
373 KOG4807 F-actin binding protei 34.8 1.9E+02 0.0042 30.7 8.3 43 291-333 436-478 (593)
374 PF11853 DUF3373: Protein of u 34.8 32 0.0007 36.5 2.9 27 284-310 32-58 (489)
375 PF13870 DUF4201: Domain of un 34.7 3E+02 0.0066 24.5 8.7 26 313-338 147-172 (177)
376 PF14775 NYD-SP28_assoc: Sperm 34.5 2.1E+02 0.0046 22.0 7.1 36 292-335 22-57 (60)
377 PF11544 Spc42p: Spindle pole 34.4 2.6E+02 0.0057 22.9 8.5 17 281-297 17-33 (76)
378 PF13935 Ead_Ea22: Ead/Ea22-li 34.3 3.2E+02 0.0069 23.9 8.9 22 285-306 92-113 (139)
379 KOG0804 Cytoplasmic Zn-finger 34.2 1.7E+02 0.0038 31.2 7.9 36 300-335 385-420 (493)
380 PRK15396 murein lipoprotein; P 34.1 2.6E+02 0.0056 22.8 8.0 35 284-318 26-60 (78)
381 PF10146 zf-C4H2: Zinc finger- 34.1 3.1E+02 0.0068 26.3 9.1 51 280-330 29-79 (230)
382 KOG0982 Centrosomal protein Nu 34.0 2.4E+02 0.0052 30.1 8.8 52 281-332 372-431 (502)
383 KOG2129 Uncharacterized conser 33.9 1.8E+02 0.0039 31.0 8.0 30 13-46 2-31 (552)
384 TIGR01000 bacteriocin_acc bact 33.6 3.8E+02 0.0082 27.4 10.3 26 140-165 90-118 (457)
385 TIGR01005 eps_transp_fam exopo 33.5 2.7E+02 0.006 30.2 9.7 27 310-336 344-370 (754)
386 PF06818 Fez1: Fez1; InterPro 33.5 1.2E+02 0.0026 28.9 6.1 30 280-309 77-106 (202)
387 PF02388 FemAB: FemAB family; 33.5 1.4E+02 0.003 30.4 7.0 25 283-307 242-266 (406)
388 PF03961 DUF342: Protein of un 33.4 2.9E+02 0.0063 28.3 9.4 55 282-336 347-407 (451)
389 KOG0249 LAR-interacting protei 33.4 4E+02 0.0086 30.4 10.7 41 292-332 218-258 (916)
390 PRK09413 IS2 repressor TnpA; R 33.2 1.1E+02 0.0024 25.8 5.3 17 317-333 91-107 (121)
391 KOG0161 Myosin class II heavy 33.1 3E+02 0.0064 34.3 10.6 65 267-331 1644-1708(1930)
392 PRK14872 rod shape-determining 33.1 99 0.0021 31.4 5.9 41 290-334 57-97 (337)
393 KOG0483 Transcription factor H 33.0 78 0.0017 29.8 4.8 29 306-334 114-142 (198)
394 PF09403 FadA: Adhesion protei 33.0 3.3E+02 0.0072 24.0 8.4 60 264-325 35-103 (126)
395 smart00787 Spc7 Spc7 kinetocho 32.8 5.1E+02 0.011 25.8 11.3 10 65-74 46-55 (312)
396 PF05701 WEMBL: Weak chloropla 32.7 3.2E+02 0.0069 28.9 9.7 65 272-336 291-355 (522)
397 PF15136 UPF0449: Uncharacteri 32.7 2.3E+02 0.0051 24.1 7.1 40 290-329 57-96 (97)
398 PF14077 WD40_alt: Alternative 32.6 48 0.001 24.9 2.7 22 283-304 18-39 (48)
399 PRK10361 DNA recombination pro 32.5 5.9E+02 0.013 27.2 11.6 15 288-302 72-86 (475)
400 PF07851 TMPIT: TMPIT-like pro 32.4 2.6E+02 0.0057 28.4 8.7 13 279-291 24-36 (330)
401 TIGR03007 pepcterm_ChnLen poly 32.4 3.6E+02 0.0077 27.6 9.8 55 285-339 326-383 (498)
402 PRK10929 putative mechanosensi 32.2 5E+02 0.011 30.6 11.8 41 294-334 262-302 (1109)
403 PHA03161 hypothetical protein; 32.2 3.9E+02 0.0084 24.5 8.9 24 286-309 57-80 (150)
404 PRK11546 zraP zinc resistance 32.2 3.7E+02 0.008 24.3 8.7 16 292-307 91-106 (143)
405 PRK05431 seryl-tRNA synthetase 32.1 4.9E+02 0.011 26.8 10.8 19 316-334 71-89 (425)
406 cd07429 Cby_like Chibby, a nuc 32.1 1E+02 0.0022 26.6 5.0 23 286-308 82-104 (108)
407 KOG0483 Transcription factor H 32.1 78 0.0017 29.8 4.7 43 294-336 109-151 (198)
408 PF09766 FimP: Fms-interacting 32.1 2.2E+02 0.0048 28.7 8.2 42 277-318 102-143 (355)
409 PF03961 DUF342: Protein of un 32.0 2.3E+02 0.0051 29.0 8.5 76 255-330 326-408 (451)
410 PF04568 IATP: Mitochondrial A 31.9 2.8E+02 0.006 23.6 7.5 41 270-310 56-96 (100)
411 PRK13923 putative spore coat p 31.9 1.3E+02 0.0029 27.8 6.0 36 282-317 110-145 (170)
412 PF04375 HemX: HemX; InterPro 31.8 2.6E+02 0.0057 28.1 8.7 44 287-330 90-135 (372)
413 KOG0996 Structural maintenance 31.8 4.4E+02 0.0096 31.4 11.1 34 302-335 554-587 (1293)
414 KOG4673 Transcription factor T 31.7 3E+02 0.0064 31.2 9.4 19 318-336 580-598 (961)
415 PF10226 DUF2216: Uncharacteri 31.6 4.7E+02 0.01 25.0 10.6 17 316-332 60-76 (195)
416 KOG2391 Vacuolar sorting prote 31.5 4.1E+02 0.0089 27.5 9.8 46 284-329 233-278 (365)
417 PF09311 Rab5-bind: Rabaptin-l 31.3 18 0.00039 32.8 0.3 45 288-332 27-71 (181)
418 TIGR03007 pepcterm_ChnLen poly 31.3 4.2E+02 0.0091 27.0 10.1 54 282-335 174-235 (498)
419 TIGR00606 rad50 rad50. This fa 31.0 5E+02 0.011 30.5 11.8 28 271-298 845-872 (1311)
420 KOG0976 Rho/Rac1-interacting s 30.8 1.6E+02 0.0035 33.8 7.4 54 281-334 174-230 (1265)
421 PF04999 FtsL: Cell division p 30.7 90 0.0019 25.1 4.3 26 284-309 43-68 (97)
422 PF15556 Zwint: ZW10 interacto 30.5 5.2E+02 0.011 25.2 10.6 47 289-335 133-179 (252)
423 PF05812 Herpes_BLRF2: Herpesv 30.4 79 0.0017 27.8 4.1 22 307-328 6-27 (118)
424 PF03962 Mnd1: Mnd1 family; I 30.2 3.5E+02 0.0076 24.9 8.5 15 314-328 113-127 (188)
425 KOG0996 Structural maintenance 30.1 5.1E+02 0.011 31.0 11.2 65 272-336 531-595 (1293)
426 COG2919 Septum formation initi 30.1 2.6E+02 0.0055 23.8 7.1 31 301-331 54-84 (117)
427 TIGR01005 eps_transp_fam exopo 29.9 6.4E+02 0.014 27.4 11.7 32 304-335 237-268 (754)
428 PF06698 DUF1192: Protein of u 29.9 1.8E+02 0.0039 22.6 5.6 25 285-309 23-47 (59)
429 PF08331 DUF1730: Domain of un 29.9 42 0.00091 26.4 2.2 19 142-160 45-63 (78)
430 PF13094 CENP-Q: CENP-Q, a CEN 29.6 3.4E+02 0.0075 23.7 8.1 51 285-335 22-72 (160)
431 PF14362 DUF4407: Domain of un 29.5 5.1E+02 0.011 24.8 10.7 23 285-307 137-159 (301)
432 PF05557 MAD: Mitotic checkpoi 29.5 2.8E+02 0.0061 30.3 9.0 22 285-306 512-533 (722)
433 PF09486 HrpB7: Bacterial type 29.4 3.7E+02 0.0079 24.6 8.3 33 284-316 80-112 (158)
434 PF12999 PRKCSH-like: Glucosid 29.2 2.9E+02 0.0063 25.8 7.8 35 275-309 138-172 (176)
435 PF08248 Tryp_FSAP: Tryptophyl 29.2 26 0.00056 19.5 0.6 7 48-54 2-8 (12)
436 PF07111 HCR: Alpha helical co 29.0 6.4E+02 0.014 28.5 11.4 34 276-309 507-540 (739)
437 TIGR01554 major_cap_HK97 phage 28.9 3.9E+02 0.0085 26.4 9.3 26 284-309 35-60 (378)
438 TIGR03495 phage_LysB phage lys 28.9 4.2E+02 0.0092 23.7 8.6 54 282-335 25-78 (135)
439 PF07544 Med9: RNA polymerase 28.8 2.4E+02 0.0051 22.7 6.4 21 314-334 62-82 (83)
440 PF15030 DUF4527: Protein of u 28.7 4.8E+02 0.01 26.0 9.4 49 267-315 42-90 (277)
441 smart00340 HALZ homeobox assoc 28.6 1.2E+02 0.0026 22.5 4.1 25 286-310 8-32 (44)
442 TIGR02680 conserved hypothetic 28.5 6.8E+02 0.015 29.8 12.3 63 272-334 871-937 (1353)
443 KOG3564 GTPase-activating prot 28.5 3.5E+02 0.0077 29.4 9.1 76 258-336 27-102 (604)
444 PF04871 Uso1_p115_C: Uso1 / p 28.5 4.1E+02 0.0089 23.3 11.4 53 283-335 55-108 (136)
445 PF01920 Prefoldin_2: Prefoldi 28.4 3E+02 0.0064 21.7 7.0 20 288-307 67-86 (106)
446 PF05557 MAD: Mitotic checkpoi 28.4 2.5E+02 0.0054 30.6 8.4 31 284-314 504-534 (722)
447 PF04949 Transcrip_act: Transc 28.3 2.6E+02 0.0057 25.8 7.1 51 258-308 40-95 (159)
448 TIGR00998 8a0101 efflux pump m 28.3 4.1E+02 0.0089 25.3 9.0 6 288-293 113-118 (334)
449 KOG0239 Kinesin (KAR3 subfamil 27.9 6E+02 0.013 28.2 11.1 50 285-334 243-292 (670)
450 PRK14143 heat shock protein Gr 27.9 2.3E+02 0.005 27.4 7.1 26 283-308 81-106 (238)
451 PHA00728 hypothetical protein 27.8 58 0.0012 29.2 2.8 22 290-311 5-26 (151)
452 KOG2010 Double stranded RNA bi 27.6 3.5E+02 0.0075 28.1 8.5 69 258-329 123-200 (405)
453 KOG0978 E3 ubiquitin ligase in 27.6 3.8E+02 0.0082 30.0 9.5 55 276-330 566-620 (698)
454 PF02994 Transposase_22: L1 tr 27.5 2.3E+02 0.0049 28.7 7.4 52 286-337 140-191 (370)
455 PRK00226 greA transcription el 27.5 3E+02 0.0066 24.2 7.4 27 313-339 49-75 (157)
456 PF06810 Phage_GP20: Phage min 27.5 3.8E+02 0.0083 24.0 8.1 14 319-332 52-65 (155)
457 KOG0495 HAT repeat protein [RN 27.3 1.5E+02 0.0032 33.4 6.3 40 280-319 114-153 (913)
458 TIGR01000 bacteriocin_acc bact 27.2 2.6E+02 0.0056 28.6 7.8 11 323-333 296-306 (457)
459 PF12777 MT: Microtubule-bindi 27.2 1.6E+02 0.0034 29.3 6.1 47 266-312 225-271 (344)
460 PF07889 DUF1664: Protein of u 27.2 4.4E+02 0.0095 23.3 10.0 54 282-335 67-120 (126)
461 PF12999 PRKCSH-like: Glucosid 27.1 5E+02 0.011 24.2 8.9 13 160-172 14-26 (176)
462 COG4238 Murein lipoprotein [Ce 27.0 3.5E+02 0.0076 22.3 6.9 47 283-329 25-71 (78)
463 PRK11147 ABC transporter ATPas 26.9 2.4E+02 0.0052 30.1 7.8 47 285-331 570-622 (635)
464 PRK10636 putative ABC transpor 26.8 3.4E+02 0.0074 29.2 8.9 24 284-307 564-587 (638)
465 KOG4370 Ral-GTPase effector RL 26.7 1.9E+02 0.0042 30.8 6.8 36 286-321 423-458 (514)
466 PRK11239 hypothetical protein; 26.6 1.1E+02 0.0024 29.4 4.7 27 286-312 186-212 (215)
467 PF08781 DP: Transcription fac 26.6 3.7E+02 0.008 24.3 7.7 46 262-311 1-46 (142)
468 PRK14148 heat shock protein Gr 26.5 3E+02 0.0066 25.8 7.5 21 286-306 57-77 (195)
469 PF00769 ERM: Ezrin/radixin/mo 26.5 5.8E+02 0.012 24.4 10.4 36 295-330 80-115 (246)
470 PHA03162 hypothetical protein; 26.5 83 0.0018 28.3 3.6 21 307-327 16-36 (135)
471 KOG0999 Microtubule-associated 26.3 2.1E+02 0.0045 31.7 7.0 74 259-332 114-191 (772)
472 TIGR01069 mutS2 MutS2 family p 26.2 4E+02 0.0087 29.8 9.5 8 141-148 416-423 (771)
473 cd07611 BAR_Amphiphysin_I_II T 26.2 3.2E+02 0.0068 26.1 7.6 54 277-330 112-169 (211)
474 PF06428 Sec2p: GDP/GTP exchan 26.2 2.8E+02 0.0061 23.5 6.6 51 286-336 11-62 (100)
475 COG1382 GimC Prefoldin, chaper 26.1 2E+02 0.0042 25.4 5.8 35 282-316 76-110 (119)
476 PF10212 TTKRSYEDQ: Predicted 26.1 3.5E+02 0.0075 29.3 8.6 45 289-333 433-477 (518)
477 PF10481 CENP-F_N: Cenp-F N-te 26.0 6E+02 0.013 25.7 9.7 72 262-340 67-138 (307)
478 KOG0612 Rho-associated, coiled 25.8 4.9E+02 0.011 31.2 10.3 72 263-337 448-527 (1317)
479 PF12808 Mto2_bdg: Micro-tubul 25.7 88 0.0019 23.8 3.1 35 278-312 17-51 (52)
480 PF14282 FlxA: FlxA-like prote 25.7 2.9E+02 0.0062 23.2 6.6 46 289-334 18-67 (106)
481 PRK11448 hsdR type I restricti 25.6 2.3E+02 0.005 33.1 7.8 53 282-334 148-207 (1123)
482 PF06424 PRP1_N: PRP1 splicing 25.6 53 0.0011 29.2 2.2 46 274-319 74-119 (133)
483 COG4372 Uncharacterized protei 25.6 6.7E+02 0.015 26.7 10.3 64 271-334 125-188 (499)
484 PF13874 Nup54: Nucleoporin co 25.6 2.4E+02 0.0052 24.6 6.3 54 282-335 64-117 (141)
485 PF07926 TPR_MLP1_2: TPR/MLP1/ 25.5 4.3E+02 0.0093 22.6 11.3 80 261-340 16-95 (132)
486 KOG0964 Structural maintenance 25.3 6.3E+02 0.014 29.9 10.7 73 261-333 396-468 (1200)
487 PF13870 DUF4201: Domain of un 25.1 4.9E+02 0.011 23.1 11.0 79 262-340 84-174 (177)
488 PF07058 Myosin_HC-like: Myosi 25.1 2.5E+02 0.0055 28.7 7.0 54 285-338 61-135 (351)
489 PHA02414 hypothetical protein 25.0 3.2E+02 0.007 23.7 6.7 47 286-332 32-78 (111)
490 cd07667 BAR_SNX30 The Bin/Amph 25.0 5E+02 0.011 25.3 8.9 54 276-332 153-206 (240)
491 PRK06342 transcription elongat 25.0 2.1E+02 0.0045 25.9 6.0 48 292-339 36-85 (160)
492 COG1382 GimC Prefoldin, chaper 24.7 2.9E+02 0.0062 24.3 6.5 42 278-319 65-106 (119)
493 PF10241 KxDL: Uncharacterized 24.4 3.9E+02 0.0084 21.7 9.7 60 276-335 15-74 (88)
494 PHA03155 hypothetical protein; 24.4 98 0.0021 27.2 3.6 22 306-327 10-31 (115)
495 PHA03065 Hypothetical protein; 24.3 4E+02 0.0088 28.2 8.5 80 254-337 76-160 (438)
496 PRK05771 V-type ATP synthase s 24.3 3.9E+02 0.0084 28.7 8.8 57 282-338 214-271 (646)
497 PF06305 DUF1049: Protein of u 24.1 74 0.0016 23.7 2.5 22 275-296 47-68 (68)
498 KOG2264 Exostosin EXT1L [Signa 23.9 8.4E+02 0.018 27.4 11.0 74 260-333 77-150 (907)
499 PRK00409 recombination and DNA 23.8 4.4E+02 0.0096 29.5 9.3 59 275-333 505-563 (782)
500 PRK13979 DNA topoisomerase IV 23.8 1.9E+02 0.0042 33.2 6.7 53 281-335 439-491 (957)
No 1
>smart00338 BRLZ basic region leucin zipper.
Probab=99.33 E-value=9.5e-12 Score=94.46 Aligned_cols=61 Identities=43% Similarity=0.578 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 019400 260 DAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDN 320 (341)
Q Consensus 260 e~KR~RRklsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN 320 (341)
+.|+.||+++||+||++||.||++|+.+||.+|..|+.+|..|..++..|..++..+..+|
T Consensus 3 ~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 3 DEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6799999999999999999999999999999999999999999999988865555554443
No 2
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.30 E-value=1.5e-11 Score=93.25 Aligned_cols=62 Identities=40% Similarity=0.558 Sum_probs=55.7
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 019400 259 VDAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDN 320 (341)
Q Consensus 259 ~e~KR~RRklsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN 320 (341)
.+.|+.+|+++||+||++||.||++|+.+||.+|..|..+|..|..++..|.+.+..|..+|
T Consensus 2 ~~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 2 KEDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35789999999999999999999999999999999999999999999999988888877776
No 3
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=99.20 E-value=1.1e-10 Score=110.38 Aligned_cols=77 Identities=29% Similarity=0.393 Sum_probs=73.7
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 259 VDAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 259 ~e~KR~RRklsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
-|+|-+||++|||.+|+-+|.|||++++++|.+|..|..||+.|+.+...|+.+.+.|.++|..|..+++.||+.|.
T Consensus 66 ~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~ 142 (292)
T KOG4005|consen 66 WEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELA 142 (292)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999988764
No 4
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=99.17 E-value=5.6e-11 Score=122.00 Aligned_cols=71 Identities=34% Similarity=0.436 Sum_probs=67.8
Q ss_pred CCChhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 255 NMDPVDAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKA 325 (341)
Q Consensus 255 ~~d~~e~KR~RRklsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lka 325 (341)
.+|++--||+.|||+|||||..||+|||+|+..||.+++.|.+||..|+++...|++++..+..||..||-
T Consensus 274 ~~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~kv 344 (655)
T KOG4343|consen 274 GSDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLKV 344 (655)
T ss_pred ccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCccccc
Confidence 57888999999999999999999999999999999999999999999999999999999999999988763
No 5
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=99.16 E-value=3.9e-11 Score=121.41 Aligned_cols=75 Identities=35% Similarity=0.525 Sum_probs=69.4
Q ss_pred CChhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 256 MDPVDAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 256 ~d~~e~KR~RRklsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
.+++..||.||||+|.+||+.||+|||+|++.||.+|.....||++|.+++..| +.+|+.|-+|+..|++.|.
T Consensus 245 aEEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~L-------e~~N~sLl~qL~klQt~v~ 317 (472)
T KOG0709|consen 245 AEERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEEL-------ELSNRSLLAQLKKLQTLVI 317 (472)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHH-------hhccHHHHHHHHHHHHHHh
Confidence 356778999999999999999999999999999999999999999999988776 7889999999999999998
Q ss_pred cc
Q 019400 336 HS 337 (341)
Q Consensus 336 ma 337 (341)
+-
T Consensus 318 q~ 319 (472)
T KOG0709|consen 318 QV 319 (472)
T ss_pred hc
Confidence 74
No 6
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=99.00 E-value=6.7e-10 Score=107.52 Aligned_cols=62 Identities=31% Similarity=0.510 Sum_probs=55.9
Q ss_pred cCCChhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 019400 254 ENMDPVDAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNE 315 (341)
Q Consensus 254 ~~~d~~e~KR~RRklsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~ 315 (341)
+..++.-.||+-|++||||+||.+|+|||+|+.+||.+|.-|+.+|..|-++|..|.+-|..
T Consensus 283 ~~aee~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeLYc~ 344 (348)
T KOG3584|consen 283 QGAEEATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKELYCH 344 (348)
T ss_pred ccchhhhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHhhc
Confidence 34566678999999999999999999999999999999999999999999999998776654
No 7
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=99.00 E-value=2.7e-09 Score=78.89 Aligned_cols=51 Identities=43% Similarity=0.636 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 019400 260 DAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQ 311 (341)
Q Consensus 260 e~KR~RRklsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~q 311 (341)
+.++.||+ +||++|++||.||++++.+|+.+|..|+.+|..|..++..|..
T Consensus 3 ~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 3 EEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 67788888 9999999999999999999999999999999999988887754
No 8
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=98.02 E-value=9.4e-08 Score=77.67 Aligned_cols=55 Identities=36% Similarity=0.534 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019400 259 VDAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKY 313 (341)
Q Consensus 259 ~e~KR~RRklsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~ 313 (341)
.+.|..||.++||.+|+.||.||..++.+||.++..|+.+...|..++..+...+
T Consensus 27 ~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~ 81 (92)
T PF03131_consen 27 AELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQER 81 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568899999999999999999999999999999988877777766666554443
No 9
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=97.90 E-value=4.3e-05 Score=73.63 Aligned_cols=49 Identities=35% Similarity=0.555 Sum_probs=42.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019400 262 KRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDIS 310 (341)
Q Consensus 262 KR~RRklsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~ 310 (341)
|-+|..++||+.|.+||.||.+||..||.+|..|..+|..|-..+..|.
T Consensus 206 kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~ 254 (279)
T KOG0837|consen 206 KLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLK 254 (279)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHH
Confidence 3344589999999999999999999999999999999998877766553
No 10
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=97.42 E-value=0.0023 Score=62.67 Aligned_cols=64 Identities=25% Similarity=0.348 Sum_probs=48.4
Q ss_pred HHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 260 DAKRVRR-MLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETL 330 (341)
Q Consensus 260 e~KR~RR-klsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~L 330 (341)
..|+.|| .+.|..+|-|-|+||++..+.|+.+...|+.+|.+|+.++..+. .|=+-||+=|.+.
T Consensus 224 ~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~le-------rEI~ylKqli~e~ 288 (294)
T KOG4571|consen 224 PEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELE-------REIRYLKQLILEV 288 (294)
T ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 3445554 45555669999999999999999999999999999999888774 4444455444443
No 11
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=96.77 E-value=0.013 Score=51.71 Aligned_cols=40 Identities=30% Similarity=0.393 Sum_probs=30.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 019400 261 AKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENS 300 (341)
Q Consensus 261 ~KR~RRklsNRESARRSR~RKka~leeLE~qV~~L~~EN~ 300 (341)
.|-.||-+|||=.|+-+|-|+..+-.+||.+-..|..+-.
T Consensus 52 lKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~ 91 (135)
T KOG4196|consen 52 LKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVE 91 (135)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667789999999999999999888777765544444333
No 12
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=96.64 E-value=0.0086 Score=57.58 Aligned_cols=47 Identities=26% Similarity=0.461 Sum_probs=40.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 019400 266 RMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQK 312 (341)
Q Consensus 266 RklsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk 312 (341)
|.-+|=+++||||.+.+....++..+|..|+.||..|+.++..|+++
T Consensus 198 rr~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~e 244 (269)
T KOG3119|consen 198 RRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKE 244 (269)
T ss_pred HHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33457799999999999999999999999999999998887776443
No 13
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=96.14 E-value=0.011 Score=62.74 Aligned_cols=67 Identities=27% Similarity=0.416 Sum_probs=51.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019400 261 AKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 261 ~KR~RRklsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV 334 (341)
.|=.||.=|||.+|+++|+||..-+..||..|..|+.|-..|+++-..+ ...=.+++.++..|-..|
T Consensus 489 IrDIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~~-------d~~L~~~kqqls~L~~~V 555 (604)
T KOG3863|consen 489 IRDIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERDEL-------DSTLGVMKQQLSELYQEV 555 (604)
T ss_pred hhccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 3456788899999999999999999999999999999888876654433 333455666666665443
No 14
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.36 E-value=0.065 Score=39.11 Aligned_cols=43 Identities=23% Similarity=0.404 Sum_probs=36.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019400 294 QLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMH 336 (341)
Q Consensus 294 ~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~m 336 (341)
+|+.+-..|......|...|..+..||..|++++..|..++.+
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~~ 44 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQM 44 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 5666777788888888888888999999999999999998864
No 15
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=95.11 E-value=0.19 Score=40.03 Aligned_cols=52 Identities=19% Similarity=0.245 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHh
Q 019400 283 AHLTELETQVSQLRVENSSLLKRLTDISQK-------YNEAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 283 a~leeLE~qV~~L~~EN~~L~~rl~~L~qk-------~~~l~~EN~~Lkaqle~LRakV 334 (341)
+-++.||.+|..+-.....|..++..|.++ ...+..+|..|+.+-.....+|
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl 62 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERL 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777776555555555555555555 4444555555555444444444
No 16
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=94.73 E-value=0.18 Score=42.83 Aligned_cols=47 Identities=30% Similarity=0.426 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETL 330 (341)
Q Consensus 284 ~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~L 330 (341)
.+..||.++..|-.+-..|+..+..|.++...|..||..||..+..+
T Consensus 9 ~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 9 RLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666665555555555555555444444444444444444443
No 17
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=94.62 E-value=0.19 Score=42.71 Aligned_cols=51 Identities=25% Similarity=0.378 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019400 287 ELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMHS 337 (341)
Q Consensus 287 eLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ma 337 (341)
+|=.++..|+..-..|..++..|..+...+..||..|+-+.+.||.+|...
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567789999999999999999999999999999999999999999998753
No 18
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=94.62 E-value=0.18 Score=43.16 Aligned_cols=47 Identities=26% Similarity=0.384 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETL 330 (341)
Q Consensus 284 ~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~L 330 (341)
.+..||.++..|-.+-..|+..+..+.++...|..||..||..+..+
T Consensus 9 ~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 9 ALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666666666666666666666655555556665555555554
No 19
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=94.61 E-value=0.27 Score=38.68 Aligned_cols=49 Identities=20% Similarity=0.083 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019400 286 TELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 286 eeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV 334 (341)
..|+.+|++|-.....|..+...|.++...+..|++.|++.++.-|.||
T Consensus 3 ~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rv 51 (65)
T TIGR02449 3 QALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKV 51 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555444444444444444445555555555555555555554
No 20
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.31 E-value=0.28 Score=39.61 Aligned_cols=51 Identities=18% Similarity=0.339 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019400 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 284 ~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV 334 (341)
-+.-|.-+|+.|+.+|+.|..+...+++....+..+|..||.+-...+.++
T Consensus 19 TI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerl 69 (79)
T COG3074 19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERL 69 (79)
T ss_pred HHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677889999999999999999999999999999999999876665554
No 21
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=94.21 E-value=0.27 Score=42.11 Aligned_cols=51 Identities=22% Similarity=0.339 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019400 286 TELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMH 336 (341)
Q Consensus 286 eeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~m 336 (341)
.+|=.++..|+..-..|..++..|.++...+..||..|+.+...||.+|.-
T Consensus 4 ~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 4 KEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678999999999999999999999999999999999999999999985
No 22
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=93.82 E-value=0.32 Score=41.95 Aligned_cols=49 Identities=24% Similarity=0.327 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019400 288 LETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMH 336 (341)
Q Consensus 288 LE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~m 336 (341)
+=.+|..|+.....|..++..+.++...+..||..|+-+.+.||.||+-
T Consensus 6 iFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 6 IFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 3345666666667788888888888889999999999999999999976
No 23
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=93.66 E-value=0.19 Score=52.42 Aligned_cols=51 Identities=24% Similarity=0.298 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAK 333 (341)
Q Consensus 283 a~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRak 333 (341)
...++||++++.|+.|.+.|.++...+++++..++.||..|+.+++.++..
T Consensus 76 ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~ 126 (475)
T PRK13729 76 VTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGAN 126 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 467899999999999999999999999999999999999999999776654
No 24
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.59 E-value=0.53 Score=44.06 Aligned_cols=44 Identities=18% Similarity=0.234 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 282 QAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKA 325 (341)
Q Consensus 282 ka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lka 325 (341)
++.+..++.++..|+.+|++|.+++..++.+...+.++|..++.
T Consensus 124 ~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 124 QQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555555555555555555444444444444443
No 25
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.42 E-value=1.4 Score=41.37 Aligned_cols=56 Identities=9% Similarity=0.085 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019400 281 KQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMH 336 (341)
Q Consensus 281 Kka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~m 336 (341)
-.++..+|+.+++++..+..+|..++..|.+++..+..+++.|++++..++..+.|
T Consensus 116 ~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~ 171 (206)
T PRK10884 116 WNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIM 171 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777888888888888888888888888888888888888888888776654
No 26
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=93.37 E-value=0.75 Score=36.31 Aligned_cols=53 Identities=25% Similarity=0.340 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019400 282 QAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 282 ka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV 334 (341)
+.+++-+..+++....+|..|..+-.....+...+-.+|..|+++++.|+..+
T Consensus 11 r~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el 63 (69)
T PF14197_consen 11 RNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKEL 63 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777777777777777666666666667777777777777776654
No 27
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=93.30 E-value=0.87 Score=36.27 Aligned_cols=52 Identities=12% Similarity=0.256 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019400 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 283 a~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV 334 (341)
..+.-|+.+|+.|+.+|..|......|.+....+..+-......|..|=.|+
T Consensus 18 eti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 18 ETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456677777777777777777777777777777777666666666655544
No 28
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.16 E-value=2.1 Score=38.89 Aligned_cols=73 Identities=15% Similarity=0.144 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 259 VDAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLR 331 (341)
Q Consensus 259 ~e~KR~RRklsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LR 331 (341)
...++++.+...+..-+.-.......+.+++.-++.|+.|...|.-++..+.+++..+..||..|-.......
T Consensus 113 ~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k 185 (194)
T PF08614_consen 113 EKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQRK 185 (194)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777888899999999999999999999999999999999999998887766544
No 29
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=92.81 E-value=0.69 Score=37.83 Aligned_cols=51 Identities=20% Similarity=0.342 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 285 leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
+.=|.-+|+.|+.+|..|..++..+......+..+|..|+.+-.....||.
T Consensus 20 I~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr 70 (79)
T PRK15422 20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQ 70 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566777777777777777777777777788899999998877776664
No 30
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=92.36 E-value=1.3 Score=34.94 Aligned_cols=54 Identities=17% Similarity=0.198 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019400 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMH 336 (341)
Q Consensus 283 a~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~m 336 (341)
+.++.|=..+.+|+.||..|+.++..+...-..+...|..=+..|+.|=.+|+-
T Consensus 7 ~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~ 60 (65)
T TIGR02449 7 AQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKA 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 467888899999999999999999999999999999999999999999888864
No 31
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=92.29 E-value=0.89 Score=36.39 Aligned_cols=51 Identities=31% Similarity=0.425 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhh
Q 019400 285 LTELETQVSQLRVENSSLLKRLTDISQKYN--------EAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 285 leeLE~qV~~L~~EN~~L~~rl~~L~qk~~--------~l~~EN~~Lkaqle~LRakV~ 335 (341)
+.+.|.+++.|+.||-.|.-++--|.++.. .+..+|-.|+.++..|+..|.
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~ 60 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQ 60 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999988888777766 345667777777777766553
No 32
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=89.91 E-value=2.4 Score=34.65 Aligned_cols=47 Identities=17% Similarity=0.269 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLR 331 (341)
Q Consensus 285 leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LR 331 (341)
-++|..++..|+..-..|..++..+.+.+..|..||..|..=|..|-
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm 64 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLM 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888888888999999999999999999999998888883
No 33
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=89.27 E-value=8.5 Score=33.41 Aligned_cols=63 Identities=19% Similarity=0.282 Sum_probs=38.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 261 AKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVL 323 (341)
Q Consensus 261 ~KR~RRklsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~L 323 (341)
.....|=...||..-....++...++.|+..+..|+.++..+..++..+..+...+..+++.+
T Consensus 44 l~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~ 106 (151)
T PF11559_consen 44 LQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSL 106 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566677777777777777777777777776666666666655555544444444333
No 34
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=87.61 E-value=5.8 Score=34.44 Aligned_cols=52 Identities=15% Similarity=0.256 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 282 QAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAK 333 (341)
Q Consensus 282 ka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRak 333 (341)
+..++.|+.+++.++.+...+..+...+..++..+...+..++.++..|...
T Consensus 72 ~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~ 123 (151)
T PF11559_consen 72 QNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQ 123 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555555555555555433
No 35
>PRK11637 AmiB activator; Provisional
Probab=87.51 E-value=8.7 Score=38.84 Aligned_cols=58 Identities=16% Similarity=0.149 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019400 277 SRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 277 SR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV 334 (341)
....-...+..|+.++..+..+...+..++..+.++...+..+=..|+.++..++..+
T Consensus 69 ~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l 126 (428)
T PRK11637 69 QRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444555555555555555555555555555555555555555555555544443
No 36
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=87.42 E-value=3.5 Score=32.55 Aligned_cols=49 Identities=29% Similarity=0.363 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRA 332 (341)
Q Consensus 284 ~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRa 332 (341)
++...+.....|..|+.....++......+..|..||..|+.++..+|.
T Consensus 20 k~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r~ 68 (69)
T PF14197_consen 20 KNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELRA 68 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455667788899999999999999999999999999999999988875
No 37
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=87.32 E-value=2.6 Score=38.57 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=10.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 297 VENSSLLKRLTDISQKYNEAAVDNRVL 323 (341)
Q Consensus 297 ~EN~~L~~rl~~L~qk~~~l~~EN~~L 323 (341)
.||..|..++..|++++..|..||..|
T Consensus 104 ~e~~~l~~e~~~l~~~~e~Le~e~~~L 130 (161)
T TIGR02894 104 KENERLKNQNESLQKRNEELEKELEKL 130 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 38
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=87.19 E-value=1.7 Score=32.92 Aligned_cols=51 Identities=29% Similarity=0.448 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 280 RKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAK 333 (341)
Q Consensus 280 RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRak 333 (341)
|++..|.+|+.+...=+ |...+ .-....+.+..+..||+.|++++..++.+
T Consensus 1 kw~~Rl~ELe~klkaer-E~R~~--d~~~a~~rl~~l~~EN~~Lr~eL~~~r~~ 51 (52)
T PF12808_consen 1 KWLLRLEELERKLKAER-EARSL--DRSAARKRLSKLEGENRLLRAELERLRSR 51 (52)
T ss_pred CHHHHHHHHHHHHHHhH-HhccC--CchhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45677888887765433 11111 12345556667789999999999988753
No 39
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=87.11 E-value=14 Score=34.37 Aligned_cols=59 Identities=27% Similarity=0.419 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019400 259 VDAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAA 317 (341)
Q Consensus 259 ~e~KR~RRklsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~ 317 (341)
.+....++.+.+-++-+.+=..-+..+..++.++..|+-++..|..++..+.+....+.
T Consensus 69 ~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~ 127 (201)
T PF13851_consen 69 EEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELY 127 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677888888888877777788888888888888888888888877766655554
No 40
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=87.02 E-value=9.1 Score=41.00 Aligned_cols=74 Identities=16% Similarity=0.268 Sum_probs=50.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 262 KRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 262 KR~RRklsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
|....+++-..........-+.+++.|+.++...+.++..|..+...+......+..|+..|+.+...++.++.
T Consensus 150 kE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~ 223 (546)
T PF07888_consen 150 KEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIR 223 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444666666666666666677777777777777777777777777777777777777777777777666653
No 41
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=86.81 E-value=2.1 Score=41.60 Aligned_cols=43 Identities=26% Similarity=0.257 Sum_probs=22.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019400 291 QVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMH 336 (341)
Q Consensus 291 qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~m 336 (341)
.+.+|+.||.+|++++..++++.... +..|++|.+.||..|++
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~---~~~l~~EN~rLr~LL~~ 109 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEIL---TQNLKQENVRLRELLNS 109 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcC
Confidence 44556677777777766664443321 12244444555555544
No 42
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=86.76 E-value=2.6 Score=42.88 Aligned_cols=67 Identities=22% Similarity=0.320 Sum_probs=52.9
Q ss_pred HHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 266 RMLSNRE-SARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRA 332 (341)
Q Consensus 266 RklsNRE-SARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRa 332 (341)
.+++|-. -+|--=.|-+.+...||.-+.+++.||+.|.-++..+.+++.+.+.|+..|..++.+-++
T Consensus 109 qkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~la 176 (401)
T PF06785_consen 109 QKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALA 176 (401)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHH
Confidence 3444432 233345677788899999999999999999999999999999999999999777766544
No 43
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=86.75 E-value=11 Score=32.65 Aligned_cols=71 Identities=21% Similarity=0.276 Sum_probs=44.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 265 RRMLSNRESARRSRRRKQAHL---TELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 265 RRklsNRESARRSR~RKka~l---eeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
.|+.+-|..|+.-=-+--... ..+..++..|+.+-..|..++..+-+-+-+...++..|+.+|..|+.-++
T Consensus 40 ~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr 113 (120)
T PF12325_consen 40 ARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYR 113 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 344444555444333333333 33335566666666677777777777777777899999999999987654
No 44
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=86.30 E-value=3 Score=36.13 Aligned_cols=47 Identities=19% Similarity=0.296 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVET 329 (341)
Q Consensus 283 a~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~ 329 (341)
..+..||.++..|-.+...|++.+..+-+....|..||..||..+..
T Consensus 8 d~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 8 DQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 45789999999999999999999999999999999999999998865
No 45
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=86.08 E-value=3.6 Score=34.66 Aligned_cols=33 Identities=15% Similarity=0.335 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 019400 279 RRKQAHLTELETQVSQLRVENSSLLKRLTDISQ 311 (341)
Q Consensus 279 ~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~q 311 (341)
.+.++++.+++.+++.|+.+|..|..++..|+.
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 445566677777777777777777777776643
No 46
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=85.43 E-value=0.044 Score=55.26 Aligned_cols=56 Identities=27% Similarity=0.307 Sum_probs=49.8
Q ss_pred CChhHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHH
Q 019400 256 MDPVDAKRVRRMLSNRESARR---SRRRKQAHLTELETQVSQLR-VENSSLLKRLTDISQ 311 (341)
Q Consensus 256 ~d~~e~KR~RRklsNRESARR---SR~RKka~leeLE~qV~~L~-~EN~~L~~rl~~L~q 311 (341)
....+.|+.+|+++|+.+|.+ +|.|++.+...|+.+|+.|+ .+|..|..++..|..
T Consensus 148 ~~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~Lqn 207 (395)
T KOG1414|consen 148 TPEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPLQN 207 (395)
T ss_pred CCcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCcccccccc
Confidence 356689999999999999999 99999999999999999999 999888777776643
No 47
>smart00340 HALZ homeobox associated leucin zipper.
Probab=85.39 E-value=1.8 Score=31.76 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 307 TDISQKYNEAAVDNRVLKADVETLRAK 333 (341)
Q Consensus 307 ~~L~qk~~~l~~EN~~Lkaqle~LRak 333 (341)
+-|..-+..|..||+.|+.++++||+.
T Consensus 8 e~LKrcce~LteeNrRL~ke~~eLral 34 (44)
T smart00340 8 ELLKRCCESLTEENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345666778899999999999999963
No 48
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=85.21 E-value=4.5 Score=35.83 Aligned_cols=50 Identities=26% Similarity=0.375 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 283 AHLTELETQVSQLRVENSSLLKRL--TDISQKYNEAAVDNRVLKADVETLRA 332 (341)
Q Consensus 283 a~leeLE~qV~~L~~EN~~L~~rl--~~L~qk~~~l~~EN~~Lkaqle~LRa 332 (341)
+.+.+|+.++..|+.+-..|...+ .+|..+...+..|+..|...++.|+.
T Consensus 86 ~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 86 EELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444443 33444455555555555555555554
No 49
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=85.12 E-value=9.6 Score=35.34 Aligned_cols=78 Identities=15% Similarity=0.249 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Q 019400 260 DAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQL-------RVENSSLLKRLTDISQK-------YNEAAVDNRVLKA 325 (341)
Q Consensus 260 e~KR~RRklsNRESARRSR~RKka~leeLE~qV~~L-------~~EN~~L~~rl~~L~qk-------~~~l~~EN~~Lka 325 (341)
+.+-.+.+|....+-+-.+.+.+.+...|+.++..- +.+-..|..++..|+.+ ......|...|+.
T Consensus 87 nV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks 166 (190)
T PF05266_consen 87 NVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKS 166 (190)
T ss_pred ccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466667777778888888888888888888877755 44444444444444443 2333345566666
Q ss_pred HHHHHHHHhhcc
Q 019400 326 DVETLRAKVMHS 337 (341)
Q Consensus 326 qle~LRakV~ma 337 (341)
.+..|...+.-+
T Consensus 167 ~~~~l~~~~~~~ 178 (190)
T PF05266_consen 167 EAEALKEEIENA 178 (190)
T ss_pred HHHHHHHHHHHH
Confidence 666666555443
No 50
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=85.03 E-value=2.6 Score=30.80 Aligned_cols=34 Identities=26% Similarity=0.398 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 302 LLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 302 L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
|......|...|..|..+|..|+.+.+.|++.|.
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~ 36 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQ 36 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777777777777777776654
No 51
>PF15294 Leu_zip: Leucine zipper
Probab=84.87 E-value=3.6 Score=40.51 Aligned_cols=45 Identities=24% Similarity=0.420 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 288 LETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRA 332 (341)
Q Consensus 288 LE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRa 332 (341)
|..++..|+.||..|+.++..++.++.....|+..|..++..||.
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667788899999999999999999999999999999999999998
No 52
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=84.87 E-value=9.7 Score=37.33 Aligned_cols=81 Identities=16% Similarity=0.310 Sum_probs=59.4
Q ss_pred hhHHHHHHHHHHhhHHH--HHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019400 258 PVDAKRVRRMLSNRESA--RRSRRRKQA-HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 258 ~~e~KR~RRklsNRESA--RRSR~RKka-~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV 334 (341)
..+.||+|-...-.-+- ++.|+-+.+ .+.+|+.+-+.|+.||..|+.....|--+.+++..+=..|++++..|.+..
T Consensus 69 K~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~ 148 (292)
T KOG4005|consen 69 KVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQ 148 (292)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHH
Confidence 34677777443321111 122333333 478999999999999999999999999999999999999999999998877
Q ss_pred hccC
Q 019400 335 MHSS 338 (341)
Q Consensus 335 ~ma~ 338 (341)
.|.+
T Consensus 149 ~~~~ 152 (292)
T KOG4005|consen 149 QHNT 152 (292)
T ss_pred HHhh
Confidence 6643
No 53
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=84.54 E-value=7.9 Score=30.12 Aligned_cols=46 Identities=17% Similarity=0.398 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 288 LETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAK 333 (341)
Q Consensus 288 LE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRak 333 (341)
+..++...+..|..+.++|.+...+...+..+=..|+.+++.||++
T Consensus 16 ~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~~ 61 (61)
T PF08826_consen 16 IQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRSR 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 4455566777788888888887777777777777777777777653
No 54
>PRK11637 AmiB activator; Provisional
Probab=84.54 E-value=15 Score=37.13 Aligned_cols=55 Identities=16% Similarity=0.183 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 281 KQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 281 Kka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
.+..+.+++.++..|..+...+..++..++++...+..+=..|..+|..++.++.
T Consensus 66 ~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~ 120 (428)
T PRK11637 66 QQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQA 120 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555555555555555555555555443
No 55
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=84.40 E-value=10 Score=32.73 Aligned_cols=60 Identities=18% Similarity=0.280 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 019400 260 DAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVD 319 (341)
Q Consensus 260 e~KR~RRklsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~E 319 (341)
-.-+..-+..-.|..+-|+..=...-++|+..+..|+.+|..+.+++.+|+.++.++...
T Consensus 14 l~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~ 73 (107)
T PF09304_consen 14 LQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRN 73 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777788888888888777788899999999999999888888888887776543
No 56
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=84.32 E-value=7.1 Score=32.05 Aligned_cols=49 Identities=18% Similarity=0.239 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Q 019400 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRV-------LKADVETLRA 332 (341)
Q Consensus 284 ~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~-------Lkaqle~LRa 332 (341)
-++.||.+|.+.-....-|.-++.+|.++...+..++.. |..+.+.|+.
T Consensus 5 vleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~ 60 (79)
T PRK15422 5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKE 60 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 467788888776666666666666666666666666555 5555555543
No 57
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=84.10 E-value=4.4 Score=36.88 Aligned_cols=56 Identities=16% Similarity=0.213 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019400 279 RRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 279 ~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV 334 (341)
...+..+.+|+.++.....-|..|..++..|+-++..++...+.|+.+-..|-.|.
T Consensus 126 ~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 126 AQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERW 181 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666666666666666777777777777777777777777776666554
No 58
>PRK02119 hypothetical protein; Provisional
Probab=83.94 E-value=9 Score=30.44 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVET 329 (341)
Q Consensus 283 a~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~ 329 (341)
+++.+||.++..++.-...|-..+....++...+..+-+.|..++..
T Consensus 9 ~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 9 NRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666777666666666666665555554444444444444444433
No 59
>PRK04406 hypothetical protein; Provisional
Probab=83.58 E-value=10 Score=30.33 Aligned_cols=50 Identities=10% Similarity=0.190 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019400 288 LETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMHS 337 (341)
Q Consensus 288 LE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ma 337 (341)
|+.++..|+.....+...+..|++-......+-..|+.++..|..+|+-.
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 58 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNM 58 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444444444444444444444444444555566777777777776543
No 60
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=83.43 E-value=6.7 Score=30.54 Aligned_cols=50 Identities=16% Similarity=0.218 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRA 332 (341)
Q Consensus 283 a~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRa 332 (341)
+++.+||.++..++.-..+|...+....++...+..+-+.|..++..++.
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~ 53 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELED 53 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 57888888888888888888888877777777777777777777666653
No 61
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=83.40 E-value=7.4 Score=31.79 Aligned_cols=55 Identities=22% Similarity=0.283 Sum_probs=39.7
Q ss_pred HHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 281 KQAHLTELETQ-VSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 281 Kka~leeLE~q-V~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
....++.++.+ -+.|..+-..|+..|..|..+...+..||..|+.+-+.|+..++
T Consensus 6 ~~~d~e~~~~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~ 61 (80)
T PF10224_consen 6 NSEDIEKLEKEEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIG 61 (80)
T ss_pred chHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555533 66777777778888888888888888888888888888877664
No 62
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=82.97 E-value=25 Score=28.92 Aligned_cols=72 Identities=19% Similarity=0.291 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 259 VDAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETL 330 (341)
Q Consensus 259 ~e~KR~RRklsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~L 330 (341)
.-.+|..+.+.+=|++=..|.-+.....+|+.++..|....+.|-.+|.....++..+..-|+.+...+...
T Consensus 8 ~al~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a 79 (89)
T PF13747_consen 8 AALTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSA 79 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888888888888888888888888999999999999999999999999999999998887766655443
No 63
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=82.24 E-value=6.3 Score=41.49 Aligned_cols=30 Identities=33% Similarity=0.433 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019400 284 HLTELETQVSQLRVENSSLLKRLTDISQKY 313 (341)
Q Consensus 284 ~leeLE~qV~~L~~EN~~L~~rl~~L~qk~ 313 (341)
++..|+.+-+.|+.||..|+++...+.++.
T Consensus 74 ~~~~l~~~N~~l~~eN~~L~~r~~~id~~i 103 (472)
T TIGR03752 74 RLAKLISENEALKAENERLQKREQSIDQQI 103 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 346677777777788887777655544443
No 64
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=81.21 E-value=11 Score=36.78 Aligned_cols=48 Identities=21% Similarity=0.317 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETL 330 (341)
Q Consensus 283 a~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~L 330 (341)
..++++..+...|..+|.+|..++..++.++..+..||..|......|
T Consensus 142 ekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l 189 (290)
T COG4026 142 EKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKL 189 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345555566666666666666667777777777778887776655444
No 65
>PRK00846 hypothetical protein; Provisional
Probab=80.73 E-value=13 Score=30.29 Aligned_cols=51 Identities=18% Similarity=0.165 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 019400 288 LETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMHSS 338 (341)
Q Consensus 288 LE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ma~ 338 (341)
++.++..|+........-+..|++.......+-..|+.++..|..||+-..
T Consensus 11 le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 11 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444444444444444444555555555555666777777787877777654
No 66
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=80.69 E-value=7 Score=36.79 Aligned_cols=51 Identities=16% Similarity=0.251 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 285 leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
+++|+..-..|..||..|...+..+.+-...|..++..|+.++..++.-|.
T Consensus 10 v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~ 60 (193)
T PF14662_consen 10 VEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQ 60 (193)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555544444444444444444444444433
No 67
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=80.61 E-value=7.7 Score=36.75 Aligned_cols=39 Identities=26% Similarity=0.375 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKA 325 (341)
Q Consensus 283 a~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lka 325 (341)
.++.+|.++.+.|+.||.+|..++..+ ..+..||..|+.
T Consensus 69 ~~~~~l~~en~~L~~e~~~l~~~~~~~----~~l~~en~~L~~ 107 (276)
T PRK13922 69 ASLFDLREENEELKKELLELESRLQEL----EQLEAENARLRE 107 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 334444444444444444444443322 344556655544
No 68
>PRK04325 hypothetical protein; Provisional
Probab=80.45 E-value=12 Score=29.73 Aligned_cols=45 Identities=22% Similarity=0.216 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 284 ~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
++.+||.++..++.-...|-..+....++. ..|+.++..|..||+
T Consensus 10 Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I-------~~L~~ql~~L~~rl~ 54 (74)
T PRK04325 10 RITELEIQLAFQEDLIDGLNATVARQQQTL-------DLLQAQLRLLYQQMR 54 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 477777777777666666666665554444 445555555555554
No 69
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=80.28 E-value=38 Score=29.30 Aligned_cols=59 Identities=19% Similarity=0.263 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 277 SRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 277 SR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
||.-.+..+..|+..++.++..+.+|.++-..|+.....+..+|..+-..+..|+++|.
T Consensus 10 s~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ 68 (107)
T PF09304_consen 10 SQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKID 68 (107)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555555555555555555555555555543
No 70
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=80.10 E-value=19 Score=34.37 Aligned_cols=55 Identities=15% Similarity=0.220 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019400 282 QAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMH 336 (341)
Q Consensus 282 ka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~m 336 (341)
++.++.|+.+++....+-..+..+...|..+...+..|=.+|.++.+.||.++.+
T Consensus 157 ~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 157 KADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIES 211 (216)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc
Confidence 3444444444444444444444444444444444444555555555555555543
No 71
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=80.10 E-value=26 Score=30.13 Aligned_cols=34 Identities=24% Similarity=0.464 Sum_probs=27.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 297 VENSSLLKRLTDISQKYNEAAVDNRVLKADVETL 330 (341)
Q Consensus 297 ~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~L 330 (341)
.+-..|..++..+.+++..|..+|..|-.+|+.|
T Consensus 98 ~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 98 EQKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445577788888889999999999999998865
No 72
>PHA03162 hypothetical protein; Provisional
Probab=80.01 E-value=5.1 Score=35.76 Aligned_cols=28 Identities=25% Similarity=0.572 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 019400 279 RRKQAHLTELETQVSQLRVENSSLLKRL 306 (341)
Q Consensus 279 ~RKka~leeLE~qV~~L~~EN~~L~~rl 306 (341)
-+++.-+++|..++.+|+.||..|++++
T Consensus 9 pk~~~tmEeLaaeL~kLqmENK~LKkkl 36 (135)
T PHA03162 9 PKAQPTMEDLAAEIAKLQLENKALKKKI 36 (135)
T ss_pred CccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566789999999999999999999998
No 73
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=79.81 E-value=19 Score=28.69 Aligned_cols=51 Identities=16% Similarity=0.298 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019400 286 TELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMH 336 (341)
Q Consensus 286 eeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~m 336 (341)
..||.--......-+.....+..|+..+.....+|..|++++..|..+|..
T Consensus 10 ~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~ 60 (70)
T PF04899_consen 10 SALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQR 60 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 334433344445556666777777777777778888888888888877753
No 74
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=79.70 E-value=13 Score=29.00 Aligned_cols=52 Identities=13% Similarity=0.215 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 019400 287 ELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMHSS 338 (341)
Q Consensus 287 eLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ma~ 338 (341)
.|+.++..|+.....+...+..|++-......+-..|+.++..|+.||+-..
T Consensus 1 ~le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 1 MLEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3788899999999999999999988888888888899999999998887643
No 75
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=79.65 E-value=6.9 Score=34.68 Aligned_cols=32 Identities=19% Similarity=0.305 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 019400 280 RKQAHLTELETQVSQLRVENSSLLKRLTDISQ 311 (341)
Q Consensus 280 RKka~leeLE~qV~~L~~EN~~L~~rl~~L~q 311 (341)
++.--.++|..++..|+.++..|..+|..|..
T Consensus 106 ~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 106 SSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344567777777777777777777777654
No 76
>PRK09039 hypothetical protein; Validated
Probab=79.51 E-value=8.7 Score=38.35 Aligned_cols=52 Identities=15% Similarity=0.222 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019400 286 TELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMHS 337 (341)
Q Consensus 286 eeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ma 337 (341)
.+...+|..|+.+...|+.++..++.....++.+.+..+.+++.|+.+|.-+
T Consensus 133 se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 133 ARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444556666666666666666666666666666777777777777666543
No 77
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=79.50 E-value=22 Score=33.51 Aligned_cols=47 Identities=17% Similarity=0.259 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 278 RRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLK 324 (341)
Q Consensus 278 R~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lk 324 (341)
+..-.+.+..|+.+++.|+..|..|...+...+++...+..+-..+.
T Consensus 51 ~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 51 KQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666666666666666666666655555555554444333
No 78
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=79.38 E-value=14 Score=32.70 Aligned_cols=20 Identities=40% Similarity=0.501 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHhHHHHHHH
Q 019400 287 ELETQVSQLRVENSSLLKRL 306 (341)
Q Consensus 287 eLE~qV~~L~~EN~~L~~rl 306 (341)
.|+.++..|..++..+-.++
T Consensus 18 ~~e~~~K~le~~~~~~E~EI 37 (143)
T PF12718_consen 18 ELEAKVKQLEQENEQKEQEI 37 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 79
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=79.24 E-value=35 Score=33.68 Aligned_cols=54 Identities=22% Similarity=0.414 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 282 QAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 282 ka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
+..++.++.++.+.+.+-.++..++.+...++..+..+-..|...+..++.||.
T Consensus 206 ~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~ 259 (269)
T PF05278_consen 206 KEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVE 259 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577778888888889999999999999999999999999999999999988885
No 80
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=78.91 E-value=5.2 Score=33.69 Aligned_cols=34 Identities=15% Similarity=0.179 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019400 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAA 317 (341)
Q Consensus 284 ~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~ 317 (341)
.+.+|+.++..++.+|..|..+...|..+...+.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456666666666666666666666655555444
No 81
>PRK02119 hypothetical protein; Provisional
Probab=78.79 E-value=14 Score=29.36 Aligned_cols=55 Identities=13% Similarity=0.155 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 019400 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMHSS 338 (341)
Q Consensus 284 ~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ma~ 338 (341)
.+..++.++..|+.....+...+..|+.-......+-..|+.++..|+.+|+-..
T Consensus 3 ~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 3 IQQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3567999999999999999999999998888888888999999999999987543
No 82
>PRK02793 phi X174 lysis protein; Provisional
Probab=78.72 E-value=16 Score=28.84 Aligned_cols=47 Identities=21% Similarity=0.247 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019400 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMH 336 (341)
Q Consensus 283 a~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~m 336 (341)
+++.+||.++..++.-..+|-..+....++. ..|+.++..|..+|+-
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I-------~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEM-------AKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHh
Confidence 4567777777766666666665555554444 4555555555555543
No 83
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.06 E-value=13 Score=38.01 Aligned_cols=53 Identities=13% Similarity=0.208 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019400 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMH 336 (341)
Q Consensus 284 ~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~m 336 (341)
.++.|.++.+.|+.--.+|..-.+.|......|+.+-..|++++.-|..++.+
T Consensus 226 eme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 226 EMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 33334433333333333333333333333333344444444444444444433
No 84
>PHA03155 hypothetical protein; Provisional
Probab=78.03 E-value=12 Score=32.68 Aligned_cols=26 Identities=38% Similarity=0.652 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH
Q 019400 283 AHLTELETQVSQLRVENSSLLKRLTD 308 (341)
Q Consensus 283 a~leeLE~qV~~L~~EN~~L~~rl~~ 308 (341)
.-+++|+.++..|+.||..|++++..
T Consensus 8 ~tvEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 8 ADVEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35799999999999999999999854
No 85
>PRK00295 hypothetical protein; Provisional
Probab=77.74 E-value=17 Score=28.43 Aligned_cols=47 Identities=17% Similarity=0.119 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVET 329 (341)
Q Consensus 283 a~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~ 329 (341)
+++.+||.++..++.-...|-..+....++...+..+=+.|..++..
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34888888888877777777666666555544444443444333333
No 86
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=77.74 E-value=22 Score=30.90 Aligned_cols=15 Identities=20% Similarity=0.446 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q 019400 319 DNRVLKADVETLRAK 333 (341)
Q Consensus 319 EN~~Lkaqle~LRak 333 (341)
+...|+.++..|..|
T Consensus 69 ~~~~L~~el~~l~~r 83 (120)
T PF12325_consen 69 EVEELEQELEELQQR 83 (120)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444444
No 87
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=77.21 E-value=13 Score=33.41 Aligned_cols=49 Identities=22% Similarity=0.371 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 287 ELETQVSQLRVENSSLLKRLTDIS-QKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 287 eLE~qV~~L~~EN~~L~~rl~~L~-qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
++|.....++..-++|+.++..+. .++..+..++..|+.+++.|+++|+
T Consensus 48 d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~ 97 (177)
T PF07798_consen 48 DLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELR 97 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555555554443 3355555566666666666655554
No 88
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.14 E-value=16 Score=35.97 Aligned_cols=50 Identities=24% Similarity=0.360 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRA 332 (341)
Q Consensus 283 a~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRa 332 (341)
..+.+++..+..++.+...|..++..+..+...+..++..+++++..|..
T Consensus 38 s~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~ 87 (265)
T COG3883 38 SKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQK 87 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444433
No 89
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=77.13 E-value=16 Score=34.50 Aligned_cols=42 Identities=21% Similarity=0.371 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 286 TELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADV 327 (341)
Q Consensus 286 eeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaql 327 (341)
..|..++..|+.+|-.|......+..++..|..+|..|+-++
T Consensus 98 q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 98 QSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL 139 (193)
T ss_pred HHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence 456677777777777777777777777777777777777766
No 90
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=77.12 E-value=27 Score=37.57 Aligned_cols=37 Identities=14% Similarity=0.148 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019400 301 SLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMHS 337 (341)
Q Consensus 301 ~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ma 337 (341)
+|...+..+...-..+..||..|+..|..|+.|+.|.
T Consensus 421 Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~ 457 (546)
T PF07888_consen 421 ELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKV 457 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444555555677789999999999999999875
No 91
>PRK09039 hypothetical protein; Validated
Probab=76.86 E-value=23 Score=35.40 Aligned_cols=47 Identities=15% Similarity=0.065 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 287 ELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAK 333 (341)
Q Consensus 287 eLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRak 333 (341)
+++.++..|..+-..++...++...+...|..+=..||.|+..|.+.
T Consensus 113 ~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~ 159 (343)
T PRK09039 113 AAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAA 159 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444443333333333333333333344443333333
No 92
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=76.68 E-value=9.2 Score=36.54 Aligned_cols=44 Identities=14% Similarity=0.283 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVE 328 (341)
Q Consensus 285 leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle 328 (341)
++..+.+.+.++.++..|.++.+.+...|..+..||..|+.+++
T Consensus 167 l~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 167 LEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 33334444445555556777777778888888889999998875
No 93
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=76.63 E-value=14 Score=39.61 Aligned_cols=66 Identities=20% Similarity=0.384 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019400 272 ESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMHS 337 (341)
Q Consensus 272 ESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ma 337 (341)
+.|.+.|..=...+.+++..+..|+.+...++.++..+..+...+..||..|..+|..+|..+...
T Consensus 130 ~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~E 195 (546)
T KOG0977|consen 130 EKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDE 195 (546)
T ss_pred HHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 444444555555566777777788888888888888888888888888888888888888766543
No 94
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=76.29 E-value=9.2 Score=41.55 Aligned_cols=31 Identities=19% Similarity=0.289 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 019400 284 HLTELETQVSQLRVENSSLLKRLTDISQKYN 314 (341)
Q Consensus 284 ~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~ 314 (341)
+..+|+..+.+|+.++..|..++..+..+..
T Consensus 437 e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~ 467 (652)
T COG2433 437 ENSELKRELEELKREIEKLESELERFRREVR 467 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555544433
No 95
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=76.23 E-value=42 Score=27.61 Aligned_cols=65 Identities=14% Similarity=0.120 Sum_probs=52.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 265 RRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVET 329 (341)
Q Consensus 265 RRklsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~ 329 (341)
-++...++..+..=..|...+..||.++..|..|-..--.++-.+......+..||+.|+.++..
T Consensus 6 ~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~K 70 (96)
T PF08647_consen 6 VSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSK 70 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 45666677777777888899999999999999988888888888888888888888888877654
No 96
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=76.15 E-value=58 Score=29.14 Aligned_cols=48 Identities=19% Similarity=0.255 Sum_probs=25.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019400 262 KRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDI 309 (341)
Q Consensus 262 KR~RRklsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L 309 (341)
+-......|++.+-.--.-+++.+..|+.++..+..+...|...+..+
T Consensus 31 reLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l 78 (140)
T PF10473_consen 31 RELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTL 78 (140)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333345556666555555556666666666555555444444444443
No 97
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=75.63 E-value=16 Score=35.44 Aligned_cols=43 Identities=21% Similarity=0.348 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 019400 270 NRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQK 312 (341)
Q Consensus 270 NRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk 312 (341)
-|..++.--..-+.++..|+.+-+.|+.+..+|..++..++.-
T Consensus 209 SR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~ 251 (269)
T KOG3119|consen 209 SRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRL 251 (269)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444555666666666666666666666666443
No 98
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=75.52 E-value=12 Score=37.48 Aligned_cols=49 Identities=22% Similarity=0.356 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019400 286 TELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 286 eeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV 334 (341)
+.|...+..|+.+|..|+.++.....++..+..+|+.||.....+.+++
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~a 71 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKA 71 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666667777777777777777777777777777777777766666654
No 99
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=75.29 E-value=22 Score=33.98 Aligned_cols=58 Identities=17% Similarity=0.226 Sum_probs=38.3
Q ss_pred HHHHHH---HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccCCC
Q 019400 283 AHLTEL---ETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAK-VMHSSIS 340 (341)
Q Consensus 283 a~leeL---E~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRak-V~ma~~~ 340 (341)
.|+++| ...+..|+....++..+.....+....+..|=..|+.++.++|.- ++++.+.
T Consensus 50 ~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e~lgl~~Lp 111 (230)
T PF10146_consen 50 AHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKEYLGLEPLP 111 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 444444 445555555555555555566666666667778888888888888 8877653
No 100
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=75.24 E-value=12 Score=35.99 Aligned_cols=42 Identities=24% Similarity=0.309 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRA 332 (341)
Q Consensus 284 ~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRa 332 (341)
+..+||.++..+..+...|+.++..| ..+|-.|=+++..|+.
T Consensus 94 Rn~ELE~elr~~~~~~~~L~~Ev~~L-------~~DN~kLYEKiRylqS 135 (248)
T PF08172_consen 94 RNAELEEELRKQQQTISSLRREVESL-------RADNVKLYEKIRYLQS 135 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhh
Confidence 34677777776666666665555444 6788888887777754
No 101
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=74.94 E-value=28 Score=33.01 Aligned_cols=49 Identities=24% Similarity=0.276 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 019400 286 TELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMHSS 338 (341)
Q Consensus 286 eeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ma~ 338 (341)
-+.-....+|+.||..|++++..|+.+.. +.+.|+++.+.||..|.+..
T Consensus 65 ~~~~~~~~~l~~en~~L~~e~~~l~~~~~----~~~~l~~en~~L~~lL~~~~ 113 (276)
T PRK13922 65 FESLASLFDLREENEELKKELLELESRLQ----ELEQLEAENARLRELLNLKE 113 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCcc
Confidence 33334566888999999998888865543 33588999999999887654
No 102
>PRK02793 phi X174 lysis protein; Provisional
Probab=74.54 E-value=22 Score=28.14 Aligned_cols=29 Identities=24% Similarity=0.352 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019400 285 LTELETQVSQLRVENSSLLKRLTDISQKY 313 (341)
Q Consensus 285 leeLE~qV~~L~~EN~~L~~rl~~L~qk~ 313 (341)
+++|-.-|...+.+...|..++..|.+++
T Consensus 24 Ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl 52 (72)
T PRK02793 24 IEELNVTVTAHEMEMAKLRDHLRLLTEKL 52 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444445555554444443
No 103
>smart00338 BRLZ basic region leucin zipper.
Probab=74.51 E-value=14 Score=27.81 Aligned_cols=33 Identities=12% Similarity=0.129 Sum_probs=14.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 292 VSQLRVENSSLLKRLTDISQKYNEAAVDNRVLK 324 (341)
Q Consensus 292 V~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lk 324 (341)
+..|+.+...|..+...|..++..+..++..|+
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 28 IEELERKVEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444443333
No 104
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=74.45 E-value=20 Score=31.61 Aligned_cols=22 Identities=32% Similarity=0.382 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHH
Q 019400 285 LTELETQVSQLRVENSSLLKRL 306 (341)
Q Consensus 285 leeLE~qV~~L~~EN~~L~~rl 306 (341)
+..|..++..|+.+-..+..++
T Consensus 37 I~sL~~K~~~lE~eld~~~~~l 58 (143)
T PF12718_consen 37 ITSLQKKNQQLEEELDKLEEQL 58 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 105
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=74.41 E-value=15 Score=35.23 Aligned_cols=51 Identities=18% Similarity=0.251 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019400 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 284 ~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV 334 (341)
-+.+|..|++.|+.|...|+-+++.++.+...+....+.|-.++..+..++
T Consensus 55 ~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~~~ 105 (263)
T PRK10803 55 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSSGG 105 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 346778888888888888888888888888888888888888888876543
No 106
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.33 E-value=23 Score=28.85 Aligned_cols=43 Identities=12% Similarity=0.159 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 282 QAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLK 324 (341)
Q Consensus 282 ka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lk 324 (341)
|-.+++|..+-..|..|-+.+......|.+....+..|...-.
T Consensus 24 QmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQ 66 (79)
T COG3074 24 QMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQ 66 (79)
T ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555554444333
No 107
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=74.33 E-value=9.3 Score=37.14 Aligned_cols=43 Identities=19% Similarity=0.112 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVE 328 (341)
Q Consensus 283 a~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle 328 (341)
..+.+|+++-++|+.|+.+|..++.. .+..+..||..||+-+.
T Consensus 66 ~~~~~l~~EN~~Lr~e~~~l~~~~~~---~~~~l~~EN~rLr~LL~ 108 (283)
T TIGR00219 66 KDVNNLEYENYKLRQELLKKNQQLEI---LTQNLKQENVRLRELLN 108 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhc
Confidence 35667788888888888888665544 34558899999998654
No 108
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=74.28 E-value=41 Score=35.16 Aligned_cols=69 Identities=20% Similarity=0.288 Sum_probs=38.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 262 KRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETL 330 (341)
Q Consensus 262 KR~RRklsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~L 330 (341)
++++-..++=+.-.++....+.....|+.++..++.++..+..++.........+...+..+...+..|
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l 106 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNAL 106 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHH
Confidence 444444444444444445555566777777777777777776666665544444444444444444444
No 109
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=74.04 E-value=40 Score=37.15 Aligned_cols=33 Identities=18% Similarity=0.174 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 019400 288 LETQVSQLRVENSSLLKRLTDISQKYNEAAVDN 320 (341)
Q Consensus 288 LE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN 320 (341)
+..+..+|+.|...|+.++....+++..++.|.
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~ 575 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESEL 575 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444433
No 110
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=73.75 E-value=19 Score=33.07 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019400 280 RKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAA 317 (341)
Q Consensus 280 RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~ 317 (341)
+.+..+..|..+++.|+.||..|.+++..+.+.|..+.
T Consensus 108 ~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~ 145 (161)
T TIGR02894 108 RLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLI 145 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666666666655555443
No 111
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=73.64 E-value=5.7 Score=34.74 Aligned_cols=28 Identities=32% Similarity=0.565 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 019400 281 KQAHLTELETQVSQLRVENSSLLKRLTD 308 (341)
Q Consensus 281 Kka~leeLE~qV~~L~~EN~~L~~rl~~ 308 (341)
|..-+++|..++..|+.||..|++++..
T Consensus 1 k~~t~EeLaaeL~kLqmENk~LKkkl~~ 28 (118)
T PF05812_consen 1 KDMTMEELAAELQKLQMENKALKKKLRQ 28 (118)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4567899999999999999999999864
No 112
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=73.54 E-value=15 Score=40.86 Aligned_cols=59 Identities=22% Similarity=0.418 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019400 279 RRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMHS 337 (341)
Q Consensus 279 ~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ma 337 (341)
.||...+..|..+...+..++..++.++..+...+.....++..|.++++.||.+|.-+
T Consensus 297 ~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k 355 (775)
T PF10174_consen 297 SRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEK 355 (775)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 46777888888999999999999999999999999999999999999999999988643
No 113
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=73.31 E-value=22 Score=34.81 Aligned_cols=45 Identities=27% Similarity=0.461 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 286 TELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETL 330 (341)
Q Consensus 286 eeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~L 330 (341)
+++..+.+.+..||.+|.++++.++.+|..+...=..|+.+...|
T Consensus 138 ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~L 182 (290)
T COG4026 138 EELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRL 182 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444333443333333
No 114
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=73.29 E-value=19 Score=27.07 Aligned_cols=11 Identities=27% Similarity=0.477 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 019400 320 NRVLKADVETL 330 (341)
Q Consensus 320 N~~Lkaqle~L 330 (341)
+..|+.++..|
T Consensus 49 ~~~L~~~~~~L 59 (64)
T PF00170_consen 49 LEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 115
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=73.23 E-value=32 Score=34.56 Aligned_cols=64 Identities=14% Similarity=0.277 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019400 271 RESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 271 RESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV 334 (341)
-|+++|-....+.++.++|.....-+..-.....+-..+.+++..+..||..|++|+.....+.
T Consensus 181 lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~ 244 (305)
T PF14915_consen 181 LESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKA 244 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888888888888877766666666667777788888888999999999998887765
No 116
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=73.17 E-value=11 Score=28.61 Aligned_cols=30 Identities=20% Similarity=0.460 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019400 280 RKQAHLTELETQVSQLRVENSSLLKRLTDI 309 (341)
Q Consensus 280 RKka~leeLE~qV~~L~~EN~~L~~rl~~L 309 (341)
+.++.+.+|+.+++.|+.+|..|..++..+
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444556777777777777777777666665
No 117
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=72.94 E-value=15 Score=28.56 Aligned_cols=30 Identities=17% Similarity=0.327 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019400 280 RKQAHLTELETQVSQLRVENSSLLKRLTDI 309 (341)
Q Consensus 280 RKka~leeLE~qV~~L~~EN~~L~~rl~~L 309 (341)
.....+..++.+++.++.+|..|..++..+
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777777777777777776665
No 118
>PRK00295 hypothetical protein; Provisional
Probab=72.89 E-value=30 Score=27.05 Aligned_cols=50 Identities=14% Similarity=0.116 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019400 288 LETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMHS 337 (341)
Q Consensus 288 LE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ma 337 (341)
++.++..|+.....+...+..|+.-......+-..|+.++..|..+|+-.
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67888899988888888888888888887888888899999888888653
No 119
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=72.75 E-value=41 Score=32.57 Aligned_cols=52 Identities=25% Similarity=0.349 Sum_probs=33.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 019400 261 AKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQK 312 (341)
Q Consensus 261 ~KR~RRklsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk 312 (341)
.+-.+++..-.+.+++.=.-++..+++|+.+|.+++.+.+.+..++...+.+
T Consensus 30 ~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~k 81 (239)
T COG1579 30 RKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEK 81 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555566666666667777777777777777777776666655444
No 120
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=72.46 E-value=22 Score=32.77 Aligned_cols=53 Identities=23% Similarity=0.236 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 283 a~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
.+|++=..+.+.|..-|.-|+.++.........|..++..|..+...|+..+.
T Consensus 67 ~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~ 119 (182)
T PF15035_consen 67 IRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELE 119 (182)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455566667777777777777766666666666666666666665553
No 121
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=72.18 E-value=30 Score=31.90 Aligned_cols=15 Identities=20% Similarity=0.528 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q 019400 282 QAHLTELETQVSQLR 296 (341)
Q Consensus 282 ka~leeLE~qV~~L~ 296 (341)
+..+.+|+.+++.+.
T Consensus 82 ~~~i~~l~~~i~~~~ 96 (188)
T PF03962_consen 82 EKKIEELEEKIEEAK 96 (188)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444555444443
No 122
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=71.99 E-value=77 Score=31.40 Aligned_cols=57 Identities=19% Similarity=0.282 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019400 278 RRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 278 R~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV 334 (341)
+..=.+.+..|+.+...|..+-..+......+..+......+...|+.++..++.+|
T Consensus 73 ~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L 129 (314)
T PF04111_consen 73 REELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQL 129 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455556666666555555555555555555555666666666666555554
No 123
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=71.79 E-value=16 Score=33.78 Aligned_cols=49 Identities=20% Similarity=0.325 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019400 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMH 336 (341)
Q Consensus 284 ~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~m 336 (341)
-+.=.|.|+..|+.+|..|..+++.|.+ ...+|..+-..+..|.-+|-.
T Consensus 41 avSL~erQ~~~LR~~~~~L~~~l~~Li~----~Ar~Ne~~~~~~~~l~l~LL~ 89 (225)
T PF04340_consen 41 AVSLVERQLERLRERNRQLEEQLEELIE----NARENEAIFQRLHRLVLALLA 89 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHC
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhc
Confidence 4555677888888888888888877743 367787777777777665533
No 124
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=71.69 E-value=5.7 Score=36.43 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHH
Q 019400 285 LTELETQVSQLRVENSSLLKRLT 307 (341)
Q Consensus 285 leeLE~qV~~L~~EN~~L~~rl~ 307 (341)
|+++|.++++--..|.-|..+|.
T Consensus 2 LeD~EsklN~AIERnalLE~ELd 24 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESELD 24 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHH
Confidence 68899999988888888888873
No 125
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=71.56 E-value=0.82 Score=46.30 Aligned_cols=44 Identities=36% Similarity=0.543 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 019400 260 DAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLL 303 (341)
Q Consensus 260 e~KR~RRklsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~ 303 (341)
++++.|=+.+||.+|-|+|.|||..+..|+.+...+..+|..|.
T Consensus 283 ~~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~ 326 (395)
T KOG1414|consen 283 DERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLL 326 (395)
T ss_pred hhhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccc
Confidence 34555558999999999999999999999999999999998887
No 126
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=71.35 E-value=7.3 Score=39.71 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=9.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHH
Q 019400 294 QLRVENSSLLKRLTDISQKYNEA 316 (341)
Q Consensus 294 ~L~~EN~~L~~rl~~L~qk~~~l 316 (341)
.|+.||..|++++++|+.+...+
T Consensus 36 aLr~EN~~LKkEN~~Lk~eVerL 58 (420)
T PF07407_consen 36 ALRMENHSLKKENNDLKIEVERL 58 (420)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 127
>PHA02562 46 endonuclease subunit; Provisional
Probab=71.32 E-value=51 Score=33.83 Aligned_cols=42 Identities=10% Similarity=0.208 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKAD 326 (341)
Q Consensus 285 leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaq 326 (341)
...|+.++..|+.++..+..++..+.+++..+..+-..+..+
T Consensus 360 ~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke 401 (562)
T PHA02562 360 AKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKE 401 (562)
T ss_pred HHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555554444444
No 128
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=71.23 E-value=28 Score=29.24 Aligned_cols=30 Identities=27% Similarity=0.403 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHH--HHHhHHHHHHHHHHHHH
Q 019400 283 AHLTELETQVSQL--RVENSSLLKRLTDISQK 312 (341)
Q Consensus 283 a~leeLE~qV~~L--~~EN~~L~~rl~~L~qk 312 (341)
.++..+|.+++.| +.+-..|..+++.++-+
T Consensus 49 ~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~ 80 (106)
T PF10805_consen 49 RRLQALETKLEHLPTRDDVHDLQLELAELRGE 80 (106)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhH
Confidence 3445555555544 44444444444444333
No 129
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=71.10 E-value=13 Score=28.14 Aligned_cols=27 Identities=22% Similarity=0.490 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 304 KRLTDISQKYNEAAVDNRVLKADVETL 330 (341)
Q Consensus 304 ~rl~~L~qk~~~l~~EN~~Lkaqle~L 330 (341)
.++..++.+...+..+|..|+.+++.|
T Consensus 24 ~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 24 QEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333444444444455555555544
No 130
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=70.91 E-value=74 Score=31.74 Aligned_cols=76 Identities=21% Similarity=0.246 Sum_probs=41.0
Q ss_pred CChhHHHHHHHHHHhhH-----HHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 256 MDPVDAKRVRRMLSNRE-----SARRSRRRK-QAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVET 329 (341)
Q Consensus 256 ~d~~e~KR~RRklsNRE-----SARRSR~RK-ka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~ 329 (341)
+-+.++|=.+=|+.|-. ++-.-.--- +..|++||..+.+|+.++.+....+..+...+..+..+-..|+.+|..
T Consensus 86 l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~ 165 (302)
T PF09738_consen 86 LAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQ 165 (302)
T ss_pred HHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888888888832 121111111 233555555555555555555555555555555555555555555544
Q ss_pred HH
Q 019400 330 LR 331 (341)
Q Consensus 330 LR 331 (341)
.-
T Consensus 166 rd 167 (302)
T PF09738_consen 166 RD 167 (302)
T ss_pred HH
Confidence 43
No 131
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=70.70 E-value=18 Score=30.32 Aligned_cols=53 Identities=19% Similarity=0.347 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019400 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMH 336 (341)
Q Consensus 283 a~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~m 336 (341)
+.+.+++.+--.+...|.+|..++..+.++...-.. +..++.++..++..++.
T Consensus 17 ~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~-~~~~~~~l~~~~~~lk~ 69 (106)
T PF05837_consen 17 EKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE-DEELSEKLEKLEKELKK 69 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHH
Confidence 345566666666666777777777666655444333 55566777777666654
No 132
>PRK04325 hypothetical protein; Provisional
Probab=70.51 E-value=31 Score=27.45 Aligned_cols=23 Identities=17% Similarity=0.138 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Q 019400 288 LETQVSQLRVENSSLLKRLTDIS 310 (341)
Q Consensus 288 LE~qV~~L~~EN~~L~~rl~~L~ 310 (341)
|-.-|...+.+...|..++..|.
T Consensus 28 LN~vv~~Qq~~I~~L~~ql~~L~ 50 (74)
T PRK04325 28 LNATVARQQQTLDLLQAQLRLLY 50 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444443
No 133
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=70.49 E-value=32 Score=30.23 Aligned_cols=62 Identities=13% Similarity=0.274 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019400 275 RRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMH 336 (341)
Q Consensus 275 RRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~m 336 (341)
.+-+.=-...+.+|+.+|..|..|--.=.++++.+-.+.+.+..+|..|+.-|..|..+|..
T Consensus 6 ~kLkE~He~ev~glq~K~~~L~~erc~Daqrleel~~knqqLreQqk~L~e~i~~LE~RLRa 67 (120)
T PF10482_consen 6 NKLKEIHEKEVQGLQNKLLELKKERCLDAQRLEELFSKNQQLREQQKTLHENIKVLENRLRA 67 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33344444567888888888888876667788888888888888999999999888888764
No 134
>PRK00736 hypothetical protein; Provisional
Probab=70.49 E-value=35 Score=26.72 Aligned_cols=47 Identities=19% Similarity=0.323 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019400 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMH 336 (341)
Q Consensus 283 a~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~m 336 (341)
+++.+||.++..++.-...|-..+..-.++. ..|+.++..|..|++-
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i-------~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTV-------EQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 4588888888887777777766665554444 4455555555555543
No 135
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=70.24 E-value=2.6 Score=35.18 Aligned_cols=45 Identities=20% Similarity=0.386 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADV 327 (341)
Q Consensus 283 a~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaql 327 (341)
.||+.|...+..|..+|..|..++..|..+...+...+..|+..+
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l 69 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRAL 69 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhh
Confidence 578889999999999999999988888777777766666555544
No 136
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=70.20 E-value=68 Score=30.60 Aligned_cols=39 Identities=13% Similarity=0.262 Sum_probs=16.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 295 LRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAK 333 (341)
Q Consensus 295 L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRak 333 (341)
++.|+..++.++..|..++..+...|..|..+|..|..+
T Consensus 214 ~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~ 252 (312)
T PF00038_consen 214 AKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQR 252 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHH
Confidence 333444444444444444444444444444444444333
No 137
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=70.10 E-value=21 Score=29.67 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 019400 312 KYNEAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 312 k~~~l~~EN~~Lkaqle~LRakV 334 (341)
+......||-.|+.++..|+...
T Consensus 45 evtr~A~EN~rL~ee~rrl~~f~ 67 (86)
T PF12711_consen 45 EVTRFAMENIRLREELRRLQSFY 67 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777777666543
No 138
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=70.00 E-value=96 Score=30.55 Aligned_cols=51 Identities=20% Similarity=0.252 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 285 leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
.+.|+..+..|+.+...|...+..+...+..+......|+.++..|++.+.
T Consensus 151 ~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~ 201 (325)
T PF08317_consen 151 KEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVE 201 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567778888899999999999999988888899899999999999888765
No 139
>PRK04406 hypothetical protein; Provisional
Probab=69.93 E-value=31 Score=27.63 Aligned_cols=50 Identities=12% Similarity=0.140 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRA 332 (341)
Q Consensus 283 a~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRa 332 (341)
+++.+||.++..++.-...|-..+....++...+..+=+.|..++..+..
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~~ 60 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMDS 60 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 57899999999999999999998888888888888888888887777654
No 140
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.45 E-value=28 Score=33.98 Aligned_cols=51 Identities=22% Similarity=0.339 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 019400 287 ELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMHSSIS 340 (341)
Q Consensus 287 eLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ma~~~ 340 (341)
.+++++.+|..|-..|...+...+ ......+..|..+++.||.-++|..+.
T Consensus 61 s~Q~~~~~L~~ev~~~~~~~~s~~---~~~~t~~~~ie~~l~~l~~~aG~v~V~ 111 (247)
T COG3879 61 SLQKKVNTLAAEVEDLENKLDSVR---RSVLTDDAALEDRLEKLRMLAGSVPVT 111 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HhHHhHHHHHHHHHHHHHHHhccCCCc
Confidence 334444444444444444444433 222355667777899999998887653
No 141
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=69.19 E-value=24 Score=34.70 Aligned_cols=7 Identities=43% Similarity=0.672 Sum_probs=3.2
Q ss_pred HHHHHHH
Q 019400 70 FQRFLQE 76 (341)
Q Consensus 70 FerFLeE 76 (341)
.+.||+.
T Consensus 16 L~~FL~~ 22 (325)
T PF08317_consen 16 LQDFLNM 22 (325)
T ss_pred HHHHHHH
Confidence 4444444
No 142
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=68.87 E-value=85 Score=27.90 Aligned_cols=60 Identities=18% Similarity=0.266 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 270 NRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVET 329 (341)
Q Consensus 270 NRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~ 329 (341)
.....+.-++..++.+..++..+..+..+-..|...+.+.+.+...+..+-..+++....
T Consensus 117 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (191)
T PF04156_consen 117 DLQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQ 176 (191)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444555666666666666666666666633333334444444333333333333
No 143
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=68.49 E-value=15 Score=27.00 Aligned_cols=29 Identities=21% Similarity=0.398 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 304 KRLTDISQKYNEAAVDNRVLKADVETLRA 332 (341)
Q Consensus 304 ~rl~~L~qk~~~l~~EN~~Lkaqle~LRa 332 (341)
.....+.+++..|..+|..|+.++..|+.
T Consensus 25 ~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 25 QREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455666667777888888888887764
No 144
>PRK00736 hypothetical protein; Provisional
Probab=68.19 E-value=39 Score=26.42 Aligned_cols=29 Identities=17% Similarity=0.337 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 019400 286 TELETQVSQLRVENSSLLKRLTDISQKYN 314 (341)
Q Consensus 286 eeLE~qV~~L~~EN~~L~~rl~~L~qk~~ 314 (341)
++|-.-|.....+...|.+++..|.+++.
T Consensus 22 e~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~ 50 (68)
T PRK00736 22 EELSDQLAEQWKTVEQMRKKLDALTERFL 50 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444555555555555544443
No 145
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=68.17 E-value=1.1e+02 Score=29.15 Aligned_cols=50 Identities=20% Similarity=0.287 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 286 TELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 286 eeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
..++..+..|+.+...|..++......|..|..-.-.|-.+|.+.|.-|.
T Consensus 258 ~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatYR~LLE 307 (312)
T PF00038_consen 258 EEYQAEIAELEEELAELREEMARQLREYQELLDVKLALDAEIATYRKLLE 307 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 33444445555555555555555555555555555666666666655543
No 146
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=67.84 E-value=24 Score=29.89 Aligned_cols=32 Identities=16% Similarity=0.249 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 304 KRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 304 ~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
.+...|+++...+..+|+.|..++..++.+.+
T Consensus 15 EEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g 46 (96)
T PF11365_consen 15 EEAELLRRKLSELEDENKQLTEELNKYKSKYG 46 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33334444445557778888888888777664
No 147
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=67.58 E-value=56 Score=25.92 Aligned_cols=36 Identities=14% Similarity=0.332 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019400 302 LLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMHS 337 (341)
Q Consensus 302 L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ma 337 (341)
|+.++..+......+...-..+..++..|+.++..+
T Consensus 38 Lr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~~~ 73 (74)
T PF12329_consen 38 LRAKIKELEKQIKELKKKLEELEKELESLEERLKRA 73 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 333333333333333444444445555566555543
No 148
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=67.39 E-value=67 Score=34.03 Aligned_cols=52 Identities=19% Similarity=0.252 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 284 ~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
..+.|+.++.+|..||.+|+..+..|...+..+..+-..+-.+++.||-++.
T Consensus 298 e~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~ 349 (502)
T KOG0982|consen 298 EKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLI 349 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 3566677889999999999999999999999999888888888888887764
No 149
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=67.34 E-value=7.4 Score=30.38 Aligned_cols=25 Identities=16% Similarity=0.454 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 302 LLKRLTDISQKYNEAAVDNRVLKAD 326 (341)
Q Consensus 302 L~~rl~~L~qk~~~l~~EN~~Lkaq 326 (341)
|+.++.+|..+...++.||..||+.
T Consensus 19 LK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 19 LKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444444444456667666653
No 150
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=67.24 E-value=17 Score=33.00 Aligned_cols=47 Identities=28% Similarity=0.374 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 286 TELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRA 332 (341)
Q Consensus 286 eeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRa 332 (341)
.+|..+|..|+.+|..|..++..+..+...+......|+.+...|..
T Consensus 92 k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~e 138 (158)
T PF09744_consen 92 KDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHE 138 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHH
Confidence 35666677777777777766665555555555444555544444433
No 151
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.22 E-value=56 Score=37.08 Aligned_cols=55 Identities=15% Similarity=0.270 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 281 KQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 281 Kka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
=+..+.+|..+.+.|+..+.+|..+.+.+..+++....+...|+.++.-|+.+++
T Consensus 662 yK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 662 YKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444555555555555555555555555555555556666666666666655
No 152
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=67.10 E-value=24 Score=33.99 Aligned_cols=48 Identities=25% Similarity=0.384 Sum_probs=32.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019400 262 KRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDIS 310 (341)
Q Consensus 262 KR~RRklsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~ 310 (341)
.|-|=+.+|.|==..-| +-++.+..|..+|+.|+.+|-+|.+++.=|+
T Consensus 87 QRDRFR~Rn~ELE~elr-~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 87 QRDRFRQRNAELEEELR-KQQQTISSLRREVESLRADNVKLYEKIRYLQ 134 (248)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333555555444443 3345678889999999999999988886653
No 153
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=66.80 E-value=73 Score=35.27 Aligned_cols=11 Identities=27% Similarity=0.328 Sum_probs=5.4
Q ss_pred hHHHHHHHHhc
Q 019400 68 WAFQRFLQEAQ 78 (341)
Q Consensus 68 WaFerFLeE~~ 78 (341)
..+..+|....
T Consensus 120 ~~~~~~l~~~~ 130 (1164)
T TIGR02169 120 SEIHDFLAAAG 130 (1164)
T ss_pred HHHHHHHHHcC
Confidence 33555555543
No 154
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=66.79 E-value=46 Score=33.56 Aligned_cols=48 Identities=27% Similarity=0.387 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 286 TELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAK 333 (341)
Q Consensus 286 eeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRak 333 (341)
..|..-+.+.+.+|..|..++..|++++.++.-+|..||+.+..+|..
T Consensus 68 ~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~ 115 (319)
T PF09789_consen 68 KNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVG 115 (319)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhh
Confidence 556677888899999999999999999999999999999998887654
No 155
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=66.77 E-value=16 Score=39.87 Aligned_cols=52 Identities=19% Similarity=0.254 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019400 286 TELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMHS 337 (341)
Q Consensus 286 eeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ma 337 (341)
.+|-.+|.+|..|+.-|+-++...++--..++..++.|.++|.++++++-.|
T Consensus 325 NDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~a 376 (832)
T KOG2077|consen 325 NDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDA 376 (832)
T ss_pred HHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999888888888888888888888888776544
No 156
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=66.73 E-value=29 Score=31.12 Aligned_cols=36 Identities=22% Similarity=0.433 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHH
Q 019400 279 RRKQAHLTELETQVSQLRV---ENSSLLKRLTDISQKYN 314 (341)
Q Consensus 279 ~RKka~leeLE~qV~~L~~---EN~~L~~rl~~L~qk~~ 314 (341)
.--+..|.+...++..|+. .|..|..++..|+.++.
T Consensus 30 ~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 30 DNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 3344455555555666655 45556666666555544
No 157
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=66.09 E-value=22 Score=39.37 Aligned_cols=47 Identities=28% Similarity=0.327 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLR 331 (341)
Q Consensus 285 leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LR 331 (341)
.+.||.+...|+.|..+++.+=..+-+.|.+++.||-.|..+|..||
T Consensus 71 ~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk 117 (717)
T PF09730_consen 71 CEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLK 117 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555556666666666666655554
No 158
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=65.89 E-value=72 Score=29.37 Aligned_cols=35 Identities=23% Similarity=0.374 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 019400 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVD 319 (341)
Q Consensus 285 leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~E 319 (341)
..+|+.++..|+.++..|..++..+..++..+...
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~ 156 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKR 156 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666666655555544433
No 159
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=65.66 E-value=56 Score=29.44 Aligned_cols=39 Identities=21% Similarity=0.348 Sum_probs=29.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 295 LRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAK 333 (341)
Q Consensus 295 L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRak 333 (341)
+..++..+..+++.+.++....+.|...||.|.+.|...
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345566677777777777788888888888888887653
No 160
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=65.46 E-value=62 Score=37.50 Aligned_cols=58 Identities=19% Similarity=0.324 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 278 RRRKQAHLTELETQVSQLRVEN-SSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 278 R~RKka~leeLE~qV~~L~~EN-~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
-++++..++.|+.+|..++.+- ..+..++.+...++..|..|+..|..++..|+.++.
T Consensus 367 i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~ 425 (1074)
T KOG0250|consen 367 IRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELN 425 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556677777777776654 667777777777777777777766666666666554
No 161
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=65.34 E-value=1.1e+02 Score=28.35 Aligned_cols=43 Identities=19% Similarity=0.265 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKA 325 (341)
Q Consensus 283 a~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lka 325 (341)
..+..++.++..|+.+...+.+++...+++...+...+...+.
T Consensus 63 ~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~ 105 (302)
T PF10186_consen 63 REIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRS 105 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444433333
No 162
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=65.29 E-value=44 Score=31.08 Aligned_cols=55 Identities=15% Similarity=0.204 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019400 282 QAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMH 336 (341)
Q Consensus 282 ka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~m 336 (341)
.+.+..|+.++..++..-..|..++..|++++..+...-..|.+.....++...+
T Consensus 98 ~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~ 152 (219)
T TIGR02977 98 QELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDV 152 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446667777777777777888888888888888777777777777776665544
No 163
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=65.20 E-value=37 Score=39.16 Aligned_cols=70 Identities=13% Similarity=0.249 Sum_probs=54.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 266 RMLSNRESARRSRRRKQAHLTELETQV-SQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 266 RklsNRESARRSR~RKka~leeLE~qV-~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
....+=...+.+..+....+.+++.+. ..+..+-.++..++..|.++...++..+..|+++.+.++.++.
T Consensus 362 ~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~ 432 (1074)
T KOG0250|consen 362 EIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAK 432 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555667777778888888888887 7778888888888888888888888888888888888776654
No 164
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=65.14 E-value=21 Score=28.72 Aligned_cols=33 Identities=18% Similarity=0.406 Sum_probs=18.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 298 ENSSLLKRLTDISQKYNEAAVDNRVLKADVETL 330 (341)
Q Consensus 298 EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~L 330 (341)
+...+..++..+.++...+..||..|+.++..|
T Consensus 36 ~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l 68 (97)
T PF04999_consen 36 QSRQLFYELQQLEKEIDQLQEENERLRLEIATL 68 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444555555555555566666666555555
No 165
>PLN02939 transferase, transferring glycosyl groups
Probab=65.06 E-value=1.8e+02 Score=33.69 Aligned_cols=27 Identities=26% Similarity=0.493 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 309 ISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 309 L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
|.+++..+..||..||.+++.|++++-
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (977)
T PLN02939 224 LSKELDVLKEENMLLKDDIQFLKAELI 250 (977)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 577888899999999999999998764
No 166
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=64.96 E-value=32 Score=34.02 Aligned_cols=53 Identities=25% Similarity=0.424 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019400 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMHS 337 (341)
Q Consensus 285 leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ma 337 (341)
+...+.++...+.+-..+..++..|+.+|.....+...|..++.....+|..|
T Consensus 230 l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA 282 (344)
T PF12777_consen 230 LEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERA 282 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccH
Confidence 34444444455555555556666666666666677777777777777666654
No 167
>PRK10963 hypothetical protein; Provisional
Probab=64.94 E-value=27 Score=32.68 Aligned_cols=43 Identities=23% Similarity=0.234 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019400 288 LETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 288 LE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV 334 (341)
.|.|++.|+.+|..|..++..|. ....+|..|-.++..|.-+|
T Consensus 42 ~ErQ~~~LR~r~~~Le~~l~~Li----~~A~~Ne~l~~~~~~l~l~L 84 (223)
T PRK10963 42 VEWQMARQRNHIHVLEEEMTLLM----EQAIANEDLFYRLLPLQSRL 84 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666665553 33556666666666665554
No 168
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=64.70 E-value=7.7 Score=28.35 Aligned_cols=35 Identities=20% Similarity=0.272 Sum_probs=8.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 293 SQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADV 327 (341)
Q Consensus 293 ~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaql 327 (341)
.+|-..|+.|..++.+++.+...|..||..||+++
T Consensus 10 ~~laK~Ns~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 10 RELAKRNSALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp --------------------HHHHHHHHHHHHHHH
T ss_pred HHHHhHhHHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 33444455555555555555555555565555543
No 169
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=64.45 E-value=65 Score=33.71 Aligned_cols=37 Identities=22% Similarity=0.364 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 019400 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDN 320 (341)
Q Consensus 284 ~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN 320 (341)
.+..++.++.+...++..+.+.+..+......+..+-
T Consensus 74 ~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 74 EIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3444444444444555555666665555555554443
No 170
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=64.19 E-value=8 Score=28.27 Aligned_cols=41 Identities=34% Similarity=0.391 Sum_probs=9.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 019400 265 RRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRL 306 (341)
Q Consensus 265 RRklsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl 306 (341)
++...|++=|+..-... ..+.+||.++..|..||-.|+.++
T Consensus 4 k~~~qn~~laK~Ns~l~-~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 4 KYSRQNRELAKRNSALS-IKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ---------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhHHHH-hHHHHHHhHHHHHHHHHHHHHHHh
Confidence 44455555555444433 445666666666666666665543
No 171
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=63.99 E-value=18 Score=38.26 Aligned_cols=26 Identities=8% Similarity=0.341 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019400 309 ISQKYNEAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 309 L~qk~~~l~~EN~~Lkaqle~LRakV 334 (341)
+.++..++..+-..|+..+..|..+|
T Consensus 114 ~~~~~~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 114 LTKEIEQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444445555555555555
No 172
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=63.94 E-value=1.3e+02 Score=28.41 Aligned_cols=77 Identities=16% Similarity=0.263 Sum_probs=56.5
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 258 PVDAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 258 ~~e~KR~RRklsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
..|.||. ++..-..-..|.-..-+++...|...+..-+.+-+....+-..++++...|..|.+.++.++..|+..|.
T Consensus 102 ~~eirR~-~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~ 178 (192)
T PF11180_consen 102 DVEIRRA-QLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVR 178 (192)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344443 4666666677777777788888888888777777777777777778888888888888888887777764
No 173
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=63.92 E-value=35 Score=28.67 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 300 SSLLKRLTDISQKYNEAAVDNRVLK 324 (341)
Q Consensus 300 ~~L~~rl~~L~qk~~~l~~EN~~Lk 324 (341)
..+..++..+..++.......++++
T Consensus 54 ~~~~~~l~~~~~~lk~~r~~~~v~k 78 (106)
T PF05837_consen 54 EELSEKLEKLEKELKKSRQRWRVMK 78 (106)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 174
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=63.91 E-value=41 Score=30.20 Aligned_cols=56 Identities=16% Similarity=0.207 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 019400 284 HLTELETQVSQLRVENSSLLKRLTDISQ--------KYNEAAVDNRVLKADVETLRAKVMHSSI 339 (341)
Q Consensus 284 ~leeLE~qV~~L~~EN~~L~~rl~~L~q--------k~~~l~~EN~~Lkaqle~LRakV~ma~~ 339 (341)
-++.|+.+++.|+.+-.++.+++..... .|+....+-..|...|..|..+|.-|.+
T Consensus 12 g~~~L~~EL~~L~~~r~~i~~~i~~Ar~~GDlsENaey~aak~~q~~~e~RI~~L~~~L~~A~i 75 (158)
T PRK05892 12 ARDHLEAELARLRARRDRLAVEVNDRGMIGDHGDQAEAIQRADELARLDDRINELDRRLRTGPT 75 (158)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhCEE
Confidence 3456666677776655556555533222 3777788888999999999999998865
No 175
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=63.13 E-value=42 Score=31.36 Aligned_cols=16 Identities=0% Similarity=-0.012 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHhHHHH
Q 019400 143 EDYQAVLKSKLNLACA 158 (341)
Q Consensus 143 ~~y~a~Lk~kL~~~ca 158 (341)
.+|.+....-++.-|.
T Consensus 22 ~~~~~~a~~lI~eE~~ 37 (221)
T PF05700_consen 22 PEERQAAEALIEEEMR 37 (221)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3344444444444444
No 176
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=63.06 E-value=17 Score=33.91 Aligned_cols=46 Identities=20% Similarity=0.295 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019400 259 VDAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDIS 310 (341)
Q Consensus 259 ~e~KR~RRklsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~ 310 (341)
-|-.|.+|..++++ ...++++.+|+.+|..|+.+..++.+.+.+|.
T Consensus 88 ~Ey~R~~~~e~~ke------e~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~ 133 (181)
T KOG3335|consen 88 FEYWRQARKERKKE------EKRKQEIMELRLKVEKLENAIAELTKFFSQLH 133 (181)
T ss_pred ehhHHhhhcchhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777777777764 44557788888888888877666666666664
No 177
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=62.89 E-value=51 Score=29.29 Aligned_cols=18 Identities=17% Similarity=0.278 Sum_probs=6.7
Q ss_pred HHHHHHHhHHHHHHHHHH
Q 019400 292 VSQLRVENSSLLKRLTDI 309 (341)
Q Consensus 292 V~~L~~EN~~L~~rl~~L 309 (341)
+..+......+.+++..+
T Consensus 132 l~~l~~~~~~~~~e~~~l 149 (191)
T PF04156_consen 132 LDSLDESIKELEKEIREL 149 (191)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 178
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=62.84 E-value=1.2e+02 Score=28.13 Aligned_cols=58 Identities=14% Similarity=0.276 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019400 277 SRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 277 SR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV 334 (341)
...+.-..+.+||.++-.|+.+.+.+.............+.++-..|++++...+.+-
T Consensus 125 ~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F 182 (190)
T PF05266_consen 125 ELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEF 182 (190)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677889999999999999888888888888888899999999999998877653
No 179
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=62.66 E-value=13 Score=30.77 Aligned_cols=30 Identities=20% Similarity=0.377 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019400 281 KQAHLTELETQVSQLRVENSSLLKRLTDIS 310 (341)
Q Consensus 281 Kka~leeLE~qV~~L~~EN~~L~~rl~~L~ 310 (341)
|+.+++.|...++.++.+|..|..++..++
T Consensus 78 ~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 78 KKKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456677788888888877777777776553
No 180
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=62.50 E-value=90 Score=34.04 Aligned_cols=56 Identities=23% Similarity=0.422 Sum_probs=32.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 268 LSNRESARRSRRRKQAHLTELETQVSQLRV------------------------ENSSLLKRLTDISQKYNEAAVDNRVL 323 (341)
Q Consensus 268 lsNRESARRSR~RKka~leeLE~qV~~L~~------------------------EN~~L~~rl~~L~qk~~~l~~EN~~L 323 (341)
..|.+.--+--..+..+|.+||..+..+.. .|.+|+.+|.+|...|-.+..+|..|
T Consensus 107 v~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~el 186 (617)
T PF15070_consen 107 VENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMEL 186 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHh
Confidence 334443333334667778888877766653 45556666666666666666665333
No 181
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=62.44 E-value=40 Score=35.06 Aligned_cols=66 Identities=21% Similarity=0.232 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019400 271 RESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMH 336 (341)
Q Consensus 271 RESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~m 336 (341)
-++|.--|.|-.+.-...|.+++.+..|-..|+.++.........+..||..||.-+..|.+-..+
T Consensus 226 eee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh 291 (561)
T KOG1103|consen 226 EEEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQH 291 (561)
T ss_pred hHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 356666777777766777777888888888888888888888888888888888888777766554
No 182
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=62.40 E-value=84 Score=32.42 Aligned_cols=70 Identities=19% Similarity=0.354 Sum_probs=46.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH
Q 019400 261 AKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTD--------------ISQKYNEAAVDNRVLKAD 326 (341)
Q Consensus 261 ~KR~RRklsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~--------------L~qk~~~l~~EN~~Lkaq 326 (341)
+-|.|.+.-|-|--|.-| +-+++-+.+.++|+..|+.|..+|.. |+.-...+..||..|+.+
T Consensus 74 q~kirk~~e~~eglr~i~----es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlq 149 (401)
T PF06785_consen 74 QTKIRKITEKDEGLRKIR----ESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQ 149 (401)
T ss_pred HHHHHHHHhccHHHHHHH----HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 345566666666665544 33444455566777777777766643 444456677899999999
Q ss_pred HHHHHHHh
Q 019400 327 VETLRAKV 334 (341)
Q Consensus 327 le~LRakV 334 (341)
+..|.+..
T Consensus 150 L~~l~~e~ 157 (401)
T PF06785_consen 150 LDALQQEC 157 (401)
T ss_pred HHHHHHHH
Confidence 99887766
No 183
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=62.32 E-value=1.2e+02 Score=27.96 Aligned_cols=37 Identities=16% Similarity=0.307 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 019400 279 RRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNE 315 (341)
Q Consensus 279 ~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~ 315 (341)
..-...+..|+.+...|+.+-..|..++..+.++...
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e 159 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEE 159 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777777777777777777777666665544
No 184
>PHA02562 46 endonuclease subunit; Provisional
Probab=62.23 E-value=1.2e+02 Score=31.24 Aligned_cols=29 Identities=24% Similarity=0.518 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019400 306 LTDISQKYNEAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 306 l~~L~qk~~~l~~EN~~Lkaqle~LRakV 334 (341)
+..+++++..+..+...|+.++..|+..+
T Consensus 215 i~~l~~e~~~l~~~~~~l~~~l~~l~~~i 243 (562)
T PHA02562 215 IARKQNKYDELVEEAKTIKAEIEELTDEL 243 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555444
No 185
>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer). MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].
Probab=62.13 E-value=41 Score=26.72 Aligned_cols=49 Identities=20% Similarity=0.327 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 287 ELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 287 eLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
.|...++.|+..|..|...++...++...+......-.+....||.+++
T Consensus 2 rL~~~ie~L~~~n~~L~~~le~~k~~se~Ls~~lgk~es~~~alrlal~ 50 (67)
T PF10506_consen 2 RLKRRIEELKSQNEMLSSTLEERKQQSEELSMDLGKYESNATALRLALK 50 (67)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4677788888888888888888888888888777777777777766553
No 186
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=61.71 E-value=1.2e+02 Score=30.09 Aligned_cols=66 Identities=15% Similarity=0.220 Sum_probs=32.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 266 RMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLR 331 (341)
Q Consensus 266 RklsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LR 331 (341)
.+.+.++...+-...-+.....|+.+-..+-.+...+..++..+.++...+..+-..+..++..|+
T Consensus 68 ~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 68 ELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444445554444444445555555555555555555555555555555554
No 187
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=61.18 E-value=57 Score=32.89 Aligned_cols=65 Identities=23% Similarity=0.354 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019400 273 SARRSRRRKQAHLTELETQVSQLRVENSSLL--------------KRLTDISQKYNEAAVDNRVLKADVETLRAKVMHS 337 (341)
Q Consensus 273 SARRSR~RKka~leeLE~qV~~L~~EN~~L~--------------~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ma 337 (341)
..|.-|..=+...+.|+.+...|+..+.++. .....|.+-+.....+|..|+.++..||+++.-+
T Consensus 20 ~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~ 98 (319)
T PF09789_consen 20 KCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEA 98 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445666666666665555544 1234455666777888999999999999987543
No 188
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=61.03 E-value=50 Score=33.14 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=11.3
Q ss_pred ChHHHHHHHHHHHhHHHHHHHH
Q 019400 141 NLEDYQAVLKSKLNLACAAVAL 162 (341)
Q Consensus 141 dp~~y~a~Lk~kL~~~caAva~ 162 (341)
+..+-+..|-..|..++..|+-
T Consensus 94 ~L~~~~~~le~~L~~~~e~v~q 115 (306)
T PF04849_consen 94 DLSERNEALEEQLGAALEQVEQ 115 (306)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555543
No 189
>PRK10698 phage shock protein PspA; Provisional
Probab=60.95 E-value=72 Score=30.05 Aligned_cols=53 Identities=13% Similarity=0.186 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019400 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMHS 337 (341)
Q Consensus 285 leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ma 337 (341)
+..|+.++...+..-..|...+..|..++..+...-..|.+....-+++.++.
T Consensus 101 ~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~ 153 (222)
T PRK10698 101 IATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVR 153 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777777777777777777777777777777777666665553
No 190
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=60.15 E-value=61 Score=26.96 Aligned_cols=41 Identities=22% Similarity=0.412 Sum_probs=32.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019400 292 VSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 292 V~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV 334 (341)
|..+..||..|+.++..++.-+ ..-+-..|-++|..||..+
T Consensus 46 vtr~A~EN~rL~ee~rrl~~f~--~~gerE~l~~eis~L~~~l 86 (86)
T PF12711_consen 46 VTRFAMENIRLREELRRLQSFY--VEGEREMLLQEISELRDQL 86 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHhhC
Confidence 4467789999999988886555 5667889999999998754
No 191
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=60.06 E-value=33 Score=26.65 Aligned_cols=35 Identities=17% Similarity=0.231 Sum_probs=22.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 297 VENSSLLKRLTDISQKYNEAAVDNRVLKADVETLR 331 (341)
Q Consensus 297 ~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LR 331 (341)
.....+..++..++++...+..||..|+.++..|.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 24 HQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34445566666666666667777777777777663
No 192
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=60.04 E-value=63 Score=31.06 Aligned_cols=44 Identities=11% Similarity=0.182 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 279 RRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRV 322 (341)
Q Consensus 279 ~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~ 322 (341)
.-=+.+|+.|+.+|..|+.++.++..++..+.++-.++-.+=..
T Consensus 57 ~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 57 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34478999999999999999999999999999887776655433
No 193
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=59.92 E-value=46 Score=27.82 Aligned_cols=7 Identities=43% Similarity=0.667 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 019400 290 TQVSQLR 296 (341)
Q Consensus 290 ~qV~~L~ 296 (341)
.+|..|+
T Consensus 34 ~KV~~LK 40 (87)
T PF12709_consen 34 TKVKALK 40 (87)
T ss_pred HHHHHHH
Confidence 3344443
No 194
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=59.83 E-value=16 Score=28.59 Aligned_cols=22 Identities=41% Similarity=0.486 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHH
Q 019400 283 AHLTELETQVSQLRVENSSLLK 304 (341)
Q Consensus 283 a~leeLE~qV~~L~~EN~~L~~ 304 (341)
.++.+|+.++.+|+.||.-|+.
T Consensus 21 ~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 21 EQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555555543
No 195
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=59.76 E-value=70 Score=34.74 Aligned_cols=57 Identities=18% Similarity=0.320 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 019400 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMHSSIS 340 (341)
Q Consensus 284 ~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ma~~~ 340 (341)
-+..++.=|.+++..++.+...+..+...+...+.|+..|+++...|+..|....+|
T Consensus 274 D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS 330 (581)
T KOG0995|consen 274 DVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGIS 330 (581)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 344455667777778888888888888888888888888888888888887665554
No 196
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=59.76 E-value=42 Score=35.62 Aligned_cols=50 Identities=16% Similarity=0.245 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019400 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 285 leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV 334 (341)
+++-+.+.++|+.+-..|+.+++.+..+...++..=..|.+++..|+.++
T Consensus 71 LteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 71 TTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444433344444444444444
No 197
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=59.64 E-value=37 Score=26.15 Aligned_cols=24 Identities=17% Similarity=0.434 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Q 019400 287 ELETQVSQLRVENSSLLKRLTDIS 310 (341)
Q Consensus 287 eLE~qV~~L~~EN~~L~~rl~~L~ 310 (341)
.++..+..++.||++|...++.+.
T Consensus 11 ~~~~~i~tvk~en~~i~~~ve~i~ 34 (55)
T PF05377_consen 11 RIESSINTVKKENEEISESVEKIE 34 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555554443
No 198
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=59.25 E-value=95 Score=30.15 Aligned_cols=56 Identities=16% Similarity=0.262 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 280 RKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 280 RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
.+...+..|+.++..++.+-..|..++..+......+..+=..|+.++..++..+.
T Consensus 86 ~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~ 141 (239)
T COG1579 86 KDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLA 141 (239)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666777777666666666666666666666666666666666666655544
No 199
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=59.03 E-value=1e+02 Score=25.52 Aligned_cols=49 Identities=20% Similarity=0.405 Sum_probs=35.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 019400 263 RVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQ 311 (341)
Q Consensus 263 R~RRklsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~q 311 (341)
+..|-++.-+...+.+..|...+..|..++..|+.+...|..++..+..
T Consensus 61 k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~~ 109 (126)
T PF13863_consen 61 KRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEYKK 109 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566667777777888888888888888888888777776643
No 200
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=58.98 E-value=50 Score=31.81 Aligned_cols=39 Identities=23% Similarity=0.426 Sum_probs=27.3
Q ss_pred HHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 297 VENSSLLKRLTDIS-QKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 297 ~EN~~L~~rl~~L~-qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
..-..+++++..+. .++..+..||..|+-+++.|+..+.
T Consensus 101 ~~f~kiRsel~S~e~sEF~~lr~e~EklkndlEk~ks~lr 140 (220)
T KOG3156|consen 101 VDFAKIRSELVSIERSEFANLRAENEKLKNDLEKLKSSLR 140 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555554443 5688888999999999999888764
No 201
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=58.69 E-value=68 Score=33.51 Aligned_cols=79 Identities=16% Similarity=0.214 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHhHHHHH---HHHHHHHHHHHHHHH
Q 019400 259 VDAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQL----------------RVENSSLLK---RLTDISQKYNEAAVD 319 (341)
Q Consensus 259 ~e~KR~RRklsNRESARRSR~RKka~leeLE~qV~~L----------------~~EN~~L~~---rl~~L~qk~~~l~~E 319 (341)
.++|..||+...-+==||.|..=...+.+|-.-|-.. ...+.+|++ +..++.++...|+..
T Consensus 226 ~~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~~E~~~rqk~le~~ 305 (411)
T KOG1318|consen 226 ALERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRARELENRQKKLEST 305 (411)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhH
Confidence 3455556666666777888888888888887654322 223333333 334555556667788
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 019400 320 NRVLKADVETLRAKVMHS 337 (341)
Q Consensus 320 N~~Lkaqle~LRakV~ma 337 (341)
|+.|..++++|.......
T Consensus 306 n~~L~~rieeLk~~~~~~ 323 (411)
T KOG1318|consen 306 NQELALRIEELKSEAGRH 323 (411)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 888888888888776544
No 202
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=58.50 E-value=31 Score=33.73 Aligned_cols=12 Identities=25% Similarity=0.346 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 019400 314 NEAAVDNRVLKA 325 (341)
Q Consensus 314 ~~l~~EN~~Lka 325 (341)
..++.||..||.
T Consensus 93 ~~l~~EN~~Lr~ 104 (284)
T COG1792 93 ESLEEENKRLKE 104 (284)
T ss_pred HHHHHHHHHHHH
Confidence 344444544433
No 203
>PRK00846 hypothetical protein; Provisional
Probab=58.31 E-value=74 Score=25.91 Aligned_cols=53 Identities=28% Similarity=0.253 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019400 282 QAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 282 ka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV 334 (341)
.+++++||.++...+.-...|-..+....+....+..+=+.|..++..+....
T Consensus 12 e~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~s~ 64 (77)
T PRK00846 12 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRSTL 64 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 36788999999988888888888888877778888877788888888776443
No 204
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=57.96 E-value=65 Score=25.10 Aligned_cols=42 Identities=21% Similarity=0.289 Sum_probs=31.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 294 QLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 294 ~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
.+..|-...+...-.+..++++....|+.|..+|..|+..+.
T Consensus 15 ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~e 56 (61)
T PF08826_consen 15 AIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEME 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666667778888888888888888888887763
No 205
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=57.92 E-value=40 Score=30.16 Aligned_cols=54 Identities=15% Similarity=0.212 Sum_probs=35.7
Q ss_pred HHHHHHHHHHH-HHhHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 019400 286 TELETQVSQLR-VENSSLLKRLTDI--------SQKYNEAAVDNRVLKADVETLRAKVMHSSI 339 (341)
Q Consensus 286 eeLE~qV~~L~-~EN~~L~~rl~~L--------~qk~~~l~~EN~~Lkaqle~LRakV~ma~~ 339 (341)
+.|+.+++.|+ .+..++.+++... +..|+.+..+-..|..+|..|..+|..|++
T Consensus 11 ~~L~~El~~L~~~~r~~~~~~i~~Ar~~GDlsENaeY~aak~~~~~le~rI~~L~~~L~~A~i 73 (156)
T TIGR01461 11 EKLKQELNYLWREERPEVTQKVTWAASLGDRSENADYQYGKKRLREIDRRVRFLTKRLENLKV 73 (156)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHhcCEE
Confidence 44555555554 2344444444333 245677778888999999999999998876
No 206
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=57.81 E-value=1.1e+02 Score=28.77 Aligned_cols=50 Identities=18% Similarity=0.238 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019400 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 285 leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV 334 (341)
...+-.-...+..||..|.+.|..+.+++..+...+..|..+-..|+...
T Consensus 151 ~~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~eq 200 (206)
T PF14988_consen 151 KKSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQEQ 200 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556677899999999999999999999999999999988887643
No 207
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=57.81 E-value=96 Score=26.02 Aligned_cols=51 Identities=14% Similarity=0.304 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 283 AHLTELETQVSQLRVENSSLLKRLTDI--SQKYNEAAVDNRVLKADVETLRAK 333 (341)
Q Consensus 283 a~leeLE~qV~~L~~EN~~L~~rl~~L--~qk~~~l~~EN~~Lkaqle~LRak 333 (341)
..++.|+.++......-+.+..++..+ .+.++.+..+=..++-++..|+++
T Consensus 35 ~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~ 87 (106)
T PF10805_consen 35 EDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSAR 87 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 344444333333333333333333333 333333333333333333333333
No 208
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=57.81 E-value=38 Score=27.62 Aligned_cols=31 Identities=19% Similarity=0.443 Sum_probs=20.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 298 ENSSLLKRLTDISQKYNEAAVDNRVLKADVE 328 (341)
Q Consensus 298 EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle 328 (341)
.+..|..++..+..+-..+..+|..|+.++.
T Consensus 69 K~~~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 69 KDQLLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445666667777777777777777776654
No 209
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=57.79 E-value=60 Score=34.53 Aligned_cols=75 Identities=23% Similarity=0.427 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH
Q 019400 260 DAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEA--------AVDNRVLKADVETLR 331 (341)
Q Consensus 260 e~KR~RRklsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l--------~~EN~~Lkaqle~LR 331 (341)
-.+..++|.+.-|.-+|. -+.+.+|+++++.-+.|+....-+--.|+.+..++ -+||..++.+++.||
T Consensus 240 akehv~km~kdle~Lq~a----Eqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~rkelE~lR 315 (575)
T KOG4403|consen 240 AKEHVNKMMKDLEGLQRA----EQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSRKELEQLR 315 (575)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHHHHHHHHH
Confidence 445566677766665543 45677777777777766554433333333333311 368999999999999
Q ss_pred HHhhccC
Q 019400 332 AKVMHSS 338 (341)
Q Consensus 332 akV~ma~ 338 (341)
..|.-|+
T Consensus 316 ~~L~kAE 322 (575)
T KOG4403|consen 316 VALEKAE 322 (575)
T ss_pred HHHHHHH
Confidence 9988775
No 210
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=57.69 E-value=42 Score=28.41 Aligned_cols=40 Identities=18% Similarity=0.290 Sum_probs=21.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019400 295 LRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 295 L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV 334 (341)
|...+..|..++..+.++...+...+..+++++..|+..+
T Consensus 78 L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 78 LSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444455555555555555555555555555666555443
No 211
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=57.51 E-value=12 Score=36.89 Aligned_cols=53 Identities=25% Similarity=0.312 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 283 a~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
.+|.++|.+|..|+.-|..|..+|+.-..-|..+...-.++|+++.++..|++
T Consensus 217 dRmk~aEaqvneLEvsN~DLsaKLe~gknaY~~~ieke~q~raeL~acEEkl~ 269 (311)
T PF04642_consen 217 DRMKEAEAQVNELEVSNIDLSAKLEPGKNAYLAAIEKENQARAELNACEEKLK 269 (311)
T ss_pred HHHHHHHhhhhheecccHHHHHhhcCCcchHHHHHhhHHHHHHHHHHHHHHHh
Confidence 45788999999999999999999976666666665555678888888887775
No 212
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.41 E-value=62 Score=31.91 Aligned_cols=32 Identities=9% Similarity=0.304 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 019400 281 KQAHLTELETQVSQLRVENSSLLKRLTDISQK 312 (341)
Q Consensus 281 Kka~leeLE~qV~~L~~EN~~L~~rl~~L~qk 312 (341)
....++++..++..++.++.++...+..++++
T Consensus 57 L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~e 88 (265)
T COG3883 57 LDNQIEEIQSKIDELQKEIDQSKAEIKKLQKE 88 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444333
No 213
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=57.00 E-value=25 Score=30.74 Aligned_cols=14 Identities=21% Similarity=0.382 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHH
Q 019400 311 QKYNEAAVDNRVLK 324 (341)
Q Consensus 311 qk~~~l~~EN~~Lk 324 (341)
++...|+.||..||
T Consensus 81 er~~~Le~EN~lLk 94 (123)
T KOG4797|consen 81 ERNSALERENSLLK 94 (123)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333455555555
No 214
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=56.97 E-value=1.3e+02 Score=31.97 Aligned_cols=69 Identities=17% Similarity=0.191 Sum_probs=32.1
Q ss_pred HHHhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhh
Q 019400 267 MLSNRESARRSRRRKQAH----LTELETQVSQLRVENSSLLKRLTDISQKYN----EAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 267 klsNRESARRSR~RKka~----leeLE~qV~~L~~EN~~L~~rl~~L~qk~~----~l~~EN~~Lkaqle~LRakV~ 335 (341)
..+|-++++.+=.||.++ ++.++.+...++.+|..|.+-......++. .....+..+..+|..|..+|+
T Consensus 369 ~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlr 445 (493)
T KOG0804|consen 369 ESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLR 445 (493)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555444433 344455555555555555444333332222 222344444555555555554
No 215
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=56.94 E-value=91 Score=26.39 Aligned_cols=40 Identities=23% Similarity=0.323 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 288 LETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADV 327 (341)
Q Consensus 288 LE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaql 327 (341)
|..++..|+.+++.+..++..+.+++.....+...||.++
T Consensus 78 L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 78 LSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555666666666666666666666666666666666653
No 216
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=56.93 E-value=60 Score=34.41 Aligned_cols=56 Identities=13% Similarity=0.211 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhh
Q 019400 280 RKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVET-LRAKVM 335 (341)
Q Consensus 280 RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~-LRakV~ 335 (341)
+|+.+.+.+...+..++....++..++..+..+...+...-+.|+.+++. |-.+.+
T Consensus 443 qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~~ISk~y~ 499 (507)
T PF05600_consen 443 QKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEADISKRYK 499 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44455678888888888888899999999999999999999999999987 555443
No 217
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=56.62 E-value=1.4e+02 Score=31.52 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 019400 282 QAHLTELETQVSQLRVENSSLLKRLTD 308 (341)
Q Consensus 282 ka~leeLE~qV~~L~~EN~~L~~rl~~ 308 (341)
++++.++|..+..|+.||..|..+...
T Consensus 47 ~a~~~~~E~~l~~Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 47 KAKLQEKELELNRLQEENTQLNEERVR 73 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888888776644
No 218
>PF14645 Chibby: Chibby family
Probab=56.41 E-value=42 Score=28.97 Aligned_cols=40 Identities=20% Similarity=0.306 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 288 LETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADV 327 (341)
Q Consensus 288 LE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaql 327 (341)
|..+..+|+.||.-|+-++..|-.-+....+|-..++.++
T Consensus 76 l~~~n~~L~EENN~Lklk~elLlDMLtettae~~l~ek~l 115 (116)
T PF14645_consen 76 LRKENQQLEEENNLLKLKIELLLDMLTETTAEAHLLEKEL 115 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444556666666666666666555555555555555443
No 219
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=56.26 E-value=54 Score=28.44 Aligned_cols=29 Identities=24% Similarity=0.381 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 302 LLKRLTDISQKYNEAAVDNRVLKADVETL 330 (341)
Q Consensus 302 L~~rl~~L~qk~~~l~~EN~~Lkaqle~L 330 (341)
|.+++..+.++...|..||.+|-+-|+.|
T Consensus 75 LSqRVdsVKEEnLKLrSENQVLGQYIeNL 103 (120)
T KOG3650|consen 75 LSQRVDSVKEENLKLRSENQVLGQYIENL 103 (120)
T ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 33333333333344445566655555554
No 220
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=56.21 E-value=50 Score=35.82 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 301 SLLKRLTDISQKYNEAAVDNRVLKADVETLR 331 (341)
Q Consensus 301 ~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LR 331 (341)
.|..+|..|.+++..|..||..||.++..|-
T Consensus 306 ~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~ 336 (655)
T KOG4343|consen 306 GLEARLQALLSENEQLKKENATLKRQLDELV 336 (655)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 4555555565555555666666666655553
No 221
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=55.77 E-value=41 Score=29.15 Aligned_cols=38 Identities=21% Similarity=0.219 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 019400 282 QAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVD 319 (341)
Q Consensus 282 ka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~E 319 (341)
|.-|++|.++|+..+.||-.|+.+.+-|-|-...|..-
T Consensus 69 QnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMSa 106 (120)
T KOG3650|consen 69 QNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSA 106 (120)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhh
Confidence 44566777777777777777766666665554444433
No 222
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=55.73 E-value=83 Score=29.37 Aligned_cols=59 Identities=19% Similarity=0.177 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019400 279 RRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMHS 337 (341)
Q Consensus 279 ~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ma 337 (341)
.-|+.-|+.||.+|...+.--.+....|...+.-......-....+.++..|+..|+.+
T Consensus 63 ~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a 121 (188)
T PF05335_consen 63 AGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAA 121 (188)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999998888888888887777777777777777777788887777654
No 223
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=55.52 E-value=40 Score=35.74 Aligned_cols=43 Identities=28% Similarity=0.323 Sum_probs=33.3
Q ss_pred HHHHHhHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019400 294 QLRVENSSLLKRLTD------------------------ISQKYNEAAVDNRVLKADVETLRAKVMH 336 (341)
Q Consensus 294 ~L~~EN~~L~~rl~~------------------------L~qk~~~l~~EN~~Lkaqle~LRakV~m 336 (341)
.|+.||..|+.+|.+ .++++..+..||..|+.||+.|+.+-+|
T Consensus 407 ~l~~eNk~L~~QLrDTAEAVqAagEllvrl~eaeea~~~a~~r~~~~eqe~ek~~kqiekLK~kh~~ 473 (488)
T PF06548_consen 407 FLKDENKGLQIQLRDTAEAVQAAGELLVRLREAEEAASVAQERAMDAEQENEKAKKQIEKLKRKHKM 473 (488)
T ss_pred HHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444589998888753 4456777789999999999999987654
No 224
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=55.48 E-value=35 Score=36.09 Aligned_cols=55 Identities=25% Similarity=0.360 Sum_probs=41.8
Q ss_pred CChhHHHHHHHHHHhhHHHHHHHHHHHHH----------HHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019400 256 MDPVDAKRVRRMLSNRESARRSRRRKQAH----------LTELETQVSQLRVENSSLLKRLTDIS 310 (341)
Q Consensus 256 ~d~~e~KR~RRklsNRESARRSR~RKka~----------leeLE~qV~~L~~EN~~L~~rl~~L~ 310 (341)
.=.+..||.|-|++--||-|+...-=..+ =.+|.++|++|+.+|..|..+|..++
T Consensus 249 iLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQ 313 (472)
T KOG0709|consen 249 ILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQ 313 (472)
T ss_pred HHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 33556777788888888888887765443 25788899999999999988886653
No 225
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=55.36 E-value=1.3e+02 Score=25.96 Aligned_cols=69 Identities=23% Similarity=0.216 Sum_probs=44.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019400 266 RMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMH 336 (341)
Q Consensus 266 RklsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~m 336 (341)
=+..|+.-|.+.=. ++..++++..++..+-.+-..|..++..+.+++..+ ..+-....=...|+..+..
T Consensus 39 l~~~n~~lAe~nL~-~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l-~~~~s~~~l~~~L~~~~~e 107 (150)
T PF07200_consen 39 LLAENEELAEQNLS-LEPELEELRSQLQELYEELKELESEYQEKEQQQDEL-SSNYSPDALLARLQAAASE 107 (150)
T ss_dssp HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCHHHHHHHHHHHHHH
Confidence 35567777765533 347777788888877777778888888777777777 5555555555555555443
No 226
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=55.32 E-value=1.3e+02 Score=34.80 Aligned_cols=54 Identities=20% Similarity=0.365 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019400 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMH 336 (341)
Q Consensus 283 a~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~m 336 (341)
.+++++..++..|......+..++..+.+.+..+...-..++.++..++.++..
T Consensus 439 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 492 (1163)
T COG1196 439 TELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDR 492 (1163)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555566666666666666666666666666666655443
No 227
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=55.12 E-value=67 Score=29.64 Aligned_cols=28 Identities=29% Similarity=0.469 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 019400 288 LETQVSQLRVENSSLLKRLTDISQKYNE 315 (341)
Q Consensus 288 LE~qV~~L~~EN~~L~~rl~~L~qk~~~ 315 (341)
|..++++....|..|...+..++..+..
T Consensus 86 LReQLEq~~~~N~~L~~dl~klt~~~~~ 113 (182)
T PF15035_consen 86 LREQLEQARKANEALQEDLQKLTQDWER 113 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666665555
No 228
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=54.89 E-value=61 Score=32.57 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019400 302 LLKRLTDISQKYNEAAVDNRVL 323 (341)
Q Consensus 302 L~~rl~~L~qk~~~l~~EN~~L 323 (341)
|..++..++++++.+..||..|
T Consensus 239 LlsqivdlQ~r~k~~~~EnEeL 260 (306)
T PF04849_consen 239 LLSQIVDLQQRCKQLAAENEEL 260 (306)
T ss_pred HHHHHHHHHHHHHHHhhhHHHH
Confidence 3334444444444444444333
No 229
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=54.77 E-value=1.3e+02 Score=25.27 Aligned_cols=53 Identities=17% Similarity=0.164 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019400 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMHS 337 (341)
Q Consensus 285 leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ma 337 (341)
.+.+...+.+....|..|...+..-++-.......+..++.+.+..+..++-+
T Consensus 34 n~~q~~tI~qq~~~~~~L~~~~~~~r~~~~~~~~~~qq~r~~~e~~~e~ik~~ 86 (110)
T PF10828_consen 34 NKAQAQTIQQQEDANQELKAQLQQNRQAVEEQQKREQQLRQQSEERRESIKTA 86 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777778888888888777777777787888998888888877654
No 230
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=54.72 E-value=1.1e+02 Score=24.34 Aligned_cols=49 Identities=18% Similarity=0.259 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLR 331 (341)
Q Consensus 283 a~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LR 331 (341)
+.+..|-.+-+.|......+...+..|+.+...+..+...|+..+..+.
T Consensus 12 e~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e 60 (74)
T PF12329_consen 12 EQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELE 60 (74)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444333
No 231
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=54.62 E-value=70 Score=31.69 Aligned_cols=52 Identities=17% Similarity=0.337 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 284 ~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
.|+.+..++..|+.||..+..+..........+..|+..+..++..++.++.
T Consensus 245 Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~ 296 (309)
T PF09728_consen 245 EMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIE 296 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666777888888888888888777777788887777777777776654
No 232
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=54.38 E-value=57 Score=29.26 Aligned_cols=36 Identities=17% Similarity=0.373 Sum_probs=21.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 293 SQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 293 ~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
.+|+.+|..|..++..| ..||..++.++..++.++.
T Consensus 77 ~eLE~~k~~L~qqv~~L-------~~e~s~~~~E~da~k~k~e 112 (135)
T KOG4196|consen 77 HELEKEKAELQQQVEKL-------KEENSRLRRELDAYKSKYE 112 (135)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 45666666666555555 5666666666666666554
No 233
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=54.36 E-value=45 Score=29.56 Aligned_cols=47 Identities=19% Similarity=0.312 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETL 330 (341)
Q Consensus 284 ~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~L 330 (341)
-+.....-+..|+.||.-|+..+..+++-|.+=...=..|+.++..+
T Consensus 79 vl~aKdETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~qL~~~ 125 (126)
T PF13118_consen 79 VLDAKDETIEALKNENRFLKEALYSMQELYEEDRKTIELLREQLKIM 125 (126)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 35566677889999999999999999888877666666666666543
No 234
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=54.28 E-value=1.1e+02 Score=29.40 Aligned_cols=72 Identities=17% Similarity=0.296 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hHHHH-HH---HHHHHHHHHHHHHHHHHHHHHH
Q 019400 260 DAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVE--------NSSLL-KR---LTDISQKYNEAAVDNRVLKADV 327 (341)
Q Consensus 260 e~KR~RRklsNRESARRSR~RKka~leeLE~qV~~L~~E--------N~~L~-~r---l~~L~qk~~~l~~EN~~Lkaql 327 (341)
+.-|.||+...-..-|+.|.-=+.=.++|..-|-+.+.. |.-++ +. +..|.++....+.|-..|++++
T Consensus 56 ~syk~rrr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~k~v 135 (229)
T KOG1319|consen 56 ESYKDRRRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRKDV 135 (229)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566655555554544444444456666655433322 22222 11 2334455555566667777777
Q ss_pred HHHH
Q 019400 328 ETLR 331 (341)
Q Consensus 328 e~LR 331 (341)
..|+
T Consensus 136 tAL~ 139 (229)
T KOG1319|consen 136 TALK 139 (229)
T ss_pred HHHH
Confidence 7765
No 235
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=53.86 E-value=75 Score=31.78 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Q 019400 285 LTELETQVSQLRVENSSLLKRLTDI 309 (341)
Q Consensus 285 leeLE~qV~~L~~EN~~L~~rl~~L 309 (341)
...|..||..|+..|..+++++...
T Consensus 80 ~~~l~~qvs~l~~~~~~~r~~~~~~ 104 (389)
T PF06216_consen 80 WISLNDQVSHLQHQNSEQRQQIREM 104 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555544444444443
No 236
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=53.85 E-value=1.1e+02 Score=33.73 Aligned_cols=25 Identities=36% Similarity=0.579 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Q 019400 285 LTELETQVSQLRVENSSLLKRLTDI 309 (341)
Q Consensus 285 leeLE~qV~~L~~EN~~L~~rl~~L 309 (341)
+..|+.+|+.|+.||+.|...+.++
T Consensus 424 i~~~~~~ve~l~~e~~~L~~~~ee~ 448 (652)
T COG2433 424 IKKLEETVERLEEENSELKRELEEL 448 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433
No 237
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=53.32 E-value=1.5e+02 Score=32.79 Aligned_cols=19 Identities=42% Similarity=0.672 Sum_probs=9.5
Q ss_pred HHHHHHHHhHHHHHHHHHH
Q 019400 291 QVSQLRVENSSLLKRLTDI 309 (341)
Q Consensus 291 qV~~L~~EN~~L~~rl~~L 309 (341)
++.+|+.+|..|..++..|
T Consensus 461 eL~qlr~ene~Lq~Kl~~L 479 (697)
T PF09726_consen 461 ELSQLRQENEQLQNKLQNL 479 (697)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555555555544433
No 238
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=53.12 E-value=79 Score=34.30 Aligned_cols=45 Identities=27% Similarity=0.463 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVE 328 (341)
Q Consensus 284 ~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle 328 (341)
.+++|..++..++.+...|...+..+.++......++..|.+++.
T Consensus 336 ~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~ 380 (594)
T PF05667_consen 336 QLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK 380 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555555555555555555555555555554
No 239
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=53.04 E-value=1.3e+02 Score=27.51 Aligned_cols=53 Identities=23% Similarity=0.266 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019400 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMHS 337 (341)
Q Consensus 285 leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ma 337 (341)
+..|+.++..+...-..|...+..+..++..+..+=..|+++...-++..++.
T Consensus 100 ~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~ 152 (221)
T PF04012_consen 100 AERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVN 152 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555666666666666666655555655555555554443
No 240
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=53.04 E-value=1.1e+02 Score=23.78 Aligned_cols=37 Identities=16% Similarity=0.269 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 019400 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVD 319 (341)
Q Consensus 283 a~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~E 319 (341)
+.++.|..+|..|..+-..|...+..++.....+..|
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~E 39 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEE 39 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777777776666666666666555444443
No 241
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=52.92 E-value=1.6e+02 Score=25.79 Aligned_cols=64 Identities=22% Similarity=0.327 Sum_probs=38.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 264 VRRMLSNRESARRSRRRKQAHLTELET-------QVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETL 330 (341)
Q Consensus 264 ~RRklsNRESARRSR~RKka~leeLE~-------qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~L 330 (341)
..+++..-+.+...-.+|++.++.|+. +|..|+.+...+..++..+...+... +..++.++..+
T Consensus 112 R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i---~~~~~~El~~f 182 (218)
T cd07596 112 RADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEI---SERLKEELKRF 182 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 335555567777777777777666643 56666666666666666665555444 34455555554
No 242
>PHA03011 hypothetical protein; Provisional
Probab=52.76 E-value=1e+02 Score=26.80 Aligned_cols=53 Identities=19% Similarity=0.295 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 283 a~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
+.+++|..|...|-.|-+-+..+...+.+-.++-..|=.-|++++.+|...+.
T Consensus 64 e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~nia 116 (120)
T PHA03011 64 EILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIA 116 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHh
Confidence 56777888888888887777777777776666666666778888888877653
No 243
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.71 E-value=1.2e+02 Score=33.24 Aligned_cols=44 Identities=27% Similarity=0.438 Sum_probs=23.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHh
Q 019400 291 QVSQLRVENSSLLKRLTDISQ---KYNEAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 291 qV~~L~~EN~~L~~rl~~L~q---k~~~l~~EN~~Lkaqle~LRakV 334 (341)
....|+.||-.|.+++..|++ .|..+..|++.|..+++-|...+
T Consensus 171 eYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ 217 (772)
T KOG0999|consen 171 EYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQL 217 (772)
T ss_pred HHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555543 25555555555555555555444
No 244
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=52.50 E-value=53 Score=37.99 Aligned_cols=46 Identities=17% Similarity=0.312 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 287 ELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRA 332 (341)
Q Consensus 287 eLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRa 332 (341)
+|..|+..+......+..++..|.+....++.||+.|..+|..|..
T Consensus 513 elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 513 ELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444445555555555666666666665543
No 245
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=52.35 E-value=1.1e+02 Score=32.29 Aligned_cols=40 Identities=20% Similarity=0.279 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 289 ETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVE 328 (341)
Q Consensus 289 E~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle 328 (341)
..|...|+.+-..+...++..+-.++.|..||.+|..+.-
T Consensus 33 ~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v 72 (459)
T KOG0288|consen 33 SAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERV 72 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444444444433
No 246
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=52.34 E-value=60 Score=33.13 Aligned_cols=37 Identities=14% Similarity=0.264 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 288 LETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLR 331 (341)
Q Consensus 288 LE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LR 331 (341)
|+.++..|+.++..|..++..++ .|-..|+.++..|+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 63 (398)
T PTZ00454 27 LEKELEFLDIQEEYIKEEQKNLK-------RELIRAKEEVKRIQ 63 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHh
Confidence 44445555555555544444443 33444555555553
No 247
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=52.25 E-value=1.2e+02 Score=29.42 Aligned_cols=20 Identities=30% Similarity=0.232 Sum_probs=8.7
Q ss_pred ChHHHH---HHHHHHHhHHHHHH
Q 019400 141 NLEDYQ---AVLKSKLNLACAAV 160 (341)
Q Consensus 141 dp~~y~---a~Lk~kL~~~caAv 160 (341)
|+..+. .-|+.++...-|-.
T Consensus 75 d~~~~~~~l~~l~~~~~~l~a~~ 97 (423)
T TIGR01843 75 DATDVEADAAELESQVLRLEAEV 97 (423)
T ss_pred ccchhhhHHHHHHHHHHHHHHHH
Confidence 444443 33445544443333
No 248
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=52.15 E-value=1.3e+02 Score=25.47 Aligned_cols=13 Identities=15% Similarity=0.256 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 019400 317 AVDNRVLKADVET 329 (341)
Q Consensus 317 ~~EN~~Lkaqle~ 329 (341)
...|..|+.++..
T Consensus 50 e~k~~~le~~l~e 62 (100)
T PF06428_consen 50 EEKNEQLEKQLKE 62 (100)
T ss_dssp HHHHHHHHHCTTH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 249
>PLN03188 kinesin-12 family protein; Provisional
Probab=52.08 E-value=38 Score=39.83 Aligned_cols=44 Identities=25% Similarity=0.265 Sum_probs=33.8
Q ss_pred HHHHHHHhHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 292 VSQLRVENSSLLKRLTD------------------------ISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 292 V~~L~~EN~~L~~rl~~------------------------L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
...|+.||..|+.+|.+ .++++..++.||..|+.+|+.|+.|-.
T Consensus 1175 r~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~klkrkh~ 1242 (1320)
T PLN03188 1175 RRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLKRKHE 1242 (1320)
T ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455569998887753 456677888999999999999988763
No 250
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=51.88 E-value=1.1e+02 Score=30.41 Aligned_cols=71 Identities=21% Similarity=0.359 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhh
Q 019400 260 DAKRVRRMLSNRESAR-RSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLR-AKVM 335 (341)
Q Consensus 260 e~KR~RRklsNRESAR-RSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LR-akV~ 335 (341)
+-|-.=.-|+|||..= .+|.||+. |..++..|+.... -..+|..|++++..++++|-+..+++..+. ++|+
T Consensus 125 ~yR~~LK~IR~~E~sl~p~R~~r~~----l~d~I~kLk~k~P-~s~kl~~LeqELvraEae~lvaEAqL~n~kR~~lK 197 (271)
T PF13805_consen 125 QYRIHLKSIRNREESLQPSRDRRRK----LQDEIAKLKYKDP-QSPKLVVLEQELVRAEAENLVAEAQLSNIKRQKLK 197 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH-T-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhHH----HHHHHHHHHhcCC-CChHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHH
Confidence 4444446788888764 44545443 3344445554332 245788899999999999999999998874 4443
No 251
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=51.51 E-value=2e+02 Score=28.79 Aligned_cols=20 Identities=25% Similarity=0.114 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 019400 315 EAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 315 ~l~~EN~~Lkaqle~LRakV 334 (341)
.|+.+|..+++.-+.||..|
T Consensus 95 ~Leddlsqt~aikeql~kyi 114 (333)
T KOG1853|consen 95 QLEDDLSQTHAIKEQLRKYI 114 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666665544
No 252
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=51.38 E-value=1.2e+02 Score=28.19 Aligned_cols=39 Identities=26% Similarity=0.399 Sum_probs=29.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019400 298 ENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMH 336 (341)
Q Consensus 298 EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~m 336 (341)
.+..+..++..-..+...+..++..|..++..|+.+|+.
T Consensus 151 ~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkE 189 (194)
T PF15619_consen 151 ENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKE 189 (194)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666677788888899999999999988864
No 253
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=50.90 E-value=49 Score=32.32 Aligned_cols=39 Identities=21% Similarity=0.287 Sum_probs=18.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 019400 296 RVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMHSS 338 (341)
Q Consensus 296 ~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ma~ 338 (341)
..||+.|+.++.++.+ ...+...|++|...||.-|....
T Consensus 72 ~~en~~Lk~~l~~~~~----~~~~~~~l~~EN~~Lr~lL~~~~ 110 (284)
T COG1792 72 ALENEELKKELAELEQ----LLEEVESLEEENKRLKELLDFKE 110 (284)
T ss_pred HHHhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhCCcc
Confidence 3344444444443322 23445556666666655555443
No 254
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=50.49 E-value=92 Score=34.13 Aligned_cols=23 Identities=17% Similarity=0.393 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHH
Q 019400 285 LTELETQVSQLRVENSSLLKRLT 307 (341)
Q Consensus 285 leeLE~qV~~L~~EN~~L~~rl~ 307 (341)
++.++.++..-+.+-.....++.
T Consensus 102 I~~~e~e~~~~e~~~~q~~~~~~ 124 (632)
T PF14817_consen 102 IESREREVSRQEASREQMLDKIS 124 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444433333333333333
No 255
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=49.81 E-value=1.8e+02 Score=30.24 Aligned_cols=44 Identities=11% Similarity=0.021 Sum_probs=29.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019400 293 SQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMH 336 (341)
Q Consensus 293 ~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~m 336 (341)
..+..-...+..++..+..+...+..+=+.|+.++..|+.++..
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~ 170 (525)
T TIGR02231 127 KEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNA 170 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555566666666666677777777777777777777643
No 256
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=49.72 E-value=1.9e+02 Score=25.86 Aligned_cols=40 Identities=30% Similarity=0.311 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 288 LETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADV 327 (341)
Q Consensus 288 LE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaql 327 (341)
|+..+..|+.++..|.+.+...+.+...|..-|..+...|
T Consensus 71 L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l 110 (140)
T PF10473_consen 71 LELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLL 110 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3333334444444444444444444444444444443333
No 257
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=49.68 E-value=37 Score=28.03 Aligned_cols=32 Identities=16% Similarity=0.254 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 301 SLLKRLTDISQKYNEAAVDNRVLKADVETLRA 332 (341)
Q Consensus 301 ~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRa 332 (341)
.+...+..|...+..+..+|..|..+|..+|+
T Consensus 77 ~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 77 YKKKEREQLNARLQELEEENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35566777888888889999999999999885
No 258
>PRK12704 phosphodiesterase; Provisional
Probab=49.56 E-value=2.4e+02 Score=30.01 Aligned_cols=15 Identities=13% Similarity=0.224 Sum_probs=5.5
Q ss_pred HHHHHHHHHHhHHHH
Q 019400 289 ETQVSQLRVENSSLL 303 (341)
Q Consensus 289 E~qV~~L~~EN~~L~ 303 (341)
+.+...|......|.
T Consensus 99 e~r~e~Lekke~eL~ 113 (520)
T PRK12704 99 DRKLELLEKREEELE 113 (520)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 259
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=49.41 E-value=72 Score=34.46 Aligned_cols=34 Identities=24% Similarity=0.468 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019400 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAA 317 (341)
Q Consensus 284 ~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~ 317 (341)
....||.++..|+.||..|..+|..+..+.++..
T Consensus 163 r~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Et 196 (546)
T KOG0977|consen 163 RIKALEDELKRLKAENSRLREELARARKQLDDET 196 (546)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 3456777888888888888888888876655544
No 260
>PRK04863 mukB cell division protein MukB; Provisional
Probab=49.37 E-value=1.6e+02 Score=35.45 Aligned_cols=21 Identities=5% Similarity=-0.042 Sum_probs=12.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHH
Q 019400 261 AKRVRRMLSNRESARRSRRRK 281 (341)
Q Consensus 261 ~KR~RRklsNRESARRSR~RK 281 (341)
.++.+.+.+.++.|++.+.-+
T Consensus 320 e~rL~kLEkQaEkA~kyleL~ 340 (1486)
T PRK04863 320 NEAESDLEQDYQAASDHLNLV 340 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455666667776655543
No 261
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=49.34 E-value=97 Score=28.49 Aligned_cols=56 Identities=16% Similarity=0.115 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhccC
Q 019400 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNE-AAVDNRVLKADVETLRAKVMHSS 338 (341)
Q Consensus 283 a~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~-l~~EN~~Lkaqle~LRakV~ma~ 338 (341)
..++.|+..++.|......+...+..+..++-+ ...+-..|..|+..|+.-+.|+.
T Consensus 79 eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~~i~emv~ 135 (157)
T COG3352 79 EELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELKMIVEMVI 135 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467778888888888777777777776655433 33346778888888888887753
No 262
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=49.05 E-value=98 Score=32.74 Aligned_cols=55 Identities=25% Similarity=0.384 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHH--------------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019400 280 RKQAHLTELETQVSQ--------------LRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 280 RKka~leeLE~qV~~--------------L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV 334 (341)
=|++|-++|+.+++. ...+-+.+..+|.-|.++|...--||..|-..++.-|+-|
T Consensus 390 MKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaL 458 (593)
T KOG4807|consen 390 MKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQAL 458 (593)
T ss_pred HHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777766542 2234455666777777777776666766666665555443
No 263
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=48.97 E-value=1.1e+02 Score=31.15 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHH
Q 019400 260 DAKRVRRMLSNRESARRSRRRKQAHL 285 (341)
Q Consensus 260 e~KR~RRklsNRESARRSR~RKka~l 285 (341)
..++.|+++++|...-..=+||..++
T Consensus 120 ~~~e~r~~lk~RI~rSEAFKRKllE~ 145 (323)
T PF08537_consen 120 SGREERRLLKDRILRSEAFKRKLLEK 145 (323)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566788888888777767765443
No 264
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=48.75 E-value=1.3e+02 Score=34.88 Aligned_cols=69 Identities=25% Similarity=0.361 Sum_probs=42.5
Q ss_pred HHHHhhHHHHHHHHH----HHH------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019400 266 RMLSNRESARRSRRR----KQA------HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 266 RklsNRESARRSR~R----Kka------~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV 334 (341)
-+++++..|.|...- +.. .......++++|+.+-..+.+++..+++.|......|..|+.+.+.|..+|
T Consensus 414 erLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L 492 (1041)
T KOG0243|consen 414 ERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKL 492 (1041)
T ss_pred HHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 456667777665321 011 234555666667777777777777777777766666667776666666555
No 265
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=48.61 E-value=1e+02 Score=23.72 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Q 019400 285 LTELETQVSQLRVENSSLLKRLTDI 309 (341)
Q Consensus 285 leeLE~qV~~L~~EN~~L~~rl~~L 309 (341)
+++||.++..+...-..+++++..+
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i 26 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEI 26 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777666655554444444
No 266
>COG5570 Uncharacterized small protein [Function unknown]
Probab=48.61 E-value=31 Score=26.63 Aligned_cols=52 Identities=25% Similarity=0.313 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019400 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 283 a~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV 334 (341)
.|+.+|+.+-..|+.|.++-...-..=-.....+...--.||.+|+.|++++
T Consensus 5 shl~eL~kkHg~le~ei~ea~n~Ps~dd~~i~eLKRrKL~lKeeIEkLka~~ 56 (57)
T COG5570 5 SHLAELEKKHGNLEREIQEAMNSPSSDDLAIRELKRRKLRLKEEIEKLKAQM 56 (57)
T ss_pred HHHHHHHHhhchHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHhccC
Confidence 4666777776666666554332211111123344555667889999998764
No 267
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=48.54 E-value=1.5e+02 Score=24.16 Aligned_cols=19 Identities=16% Similarity=0.380 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 019400 316 AAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 316 l~~EN~~Lkaqle~LRakV 334 (341)
+..+-..|+.++..|...+
T Consensus 72 l~~e~~~lk~~i~~le~~~ 90 (108)
T PF02403_consen 72 LKAEVKELKEEIKELEEQL 90 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433
No 268
>PF15058 Speriolin_N: Speriolin N terminus
Probab=48.52 E-value=38 Score=32.12 Aligned_cols=26 Identities=31% Similarity=0.294 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019400 285 LTELETQVSQLRVENSSLLKRLTDIS 310 (341)
Q Consensus 285 leeLE~qV~~L~~EN~~L~~rl~~L~ 310 (341)
.+.|.+|++.|-.||.+|++++..++
T Consensus 7 yeGlrhqierLv~ENeeLKKlVrLir 32 (200)
T PF15058_consen 7 YEGLRHQIERLVRENEELKKLVRLIR 32 (200)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 46778888888899999988887663
No 269
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=48.46 E-value=2.9e+02 Score=27.55 Aligned_cols=51 Identities=14% Similarity=0.165 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 285 leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
.+.|+..+..|+.+...|.+.++.+..-+..+......|+.++..|++...
T Consensus 146 k~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~ 196 (312)
T smart00787 146 KEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLED 196 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 456677788888888888888888877777777777888888877776543
No 270
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=47.76 E-value=1e+02 Score=30.83 Aligned_cols=50 Identities=12% Similarity=0.254 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 286 TELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 286 eeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
+-|..++..|+.....|.+++......+..+......|+.++..||..|.
T Consensus 115 d~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~ 164 (302)
T PF09738_consen 115 DLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLK 164 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444455555544444455555666677777777777664
No 271
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=47.70 E-value=77 Score=30.11 Aligned_cols=35 Identities=23% Similarity=0.266 Sum_probs=23.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 298 ENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRA 332 (341)
Q Consensus 298 EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRa 332 (341)
||..|..++..+...+..+..||..|+.-++.++.
T Consensus 126 ENe~Lh~~ie~~~eEi~~lk~en~~L~elae~~~~ 160 (200)
T PF07412_consen 126 ENEKLHKEIEQKDEEIAKLKEENEELKELAEHVQY 160 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777777777777777765555443
No 272
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=47.66 E-value=1.1e+02 Score=28.80 Aligned_cols=16 Identities=13% Similarity=0.239 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHhhc
Q 019400 321 RVLKADVETLRAKVMH 336 (341)
Q Consensus 321 ~~Lkaqle~LRakV~m 336 (341)
..+..+|..|..+|+-
T Consensus 172 ~~~e~~i~~L~~~lke 187 (237)
T PF00261_consen 172 DEYEEKIRDLEEKLKE 187 (237)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444455555555543
No 273
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=47.13 E-value=1.5e+02 Score=24.80 Aligned_cols=40 Identities=20% Similarity=0.303 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 019400 281 KQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDN 320 (341)
Q Consensus 281 Kka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN 320 (341)
|+.|-...+.+|..|+.+|..|..++..|+.+......|-
T Consensus 40 KksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek 79 (87)
T PF12709_consen 40 KKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREEK 79 (87)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566666666666666666555555444444433
No 274
>PRK02224 chromosome segregation protein; Provisional
Probab=47.06 E-value=2.6e+02 Score=30.71 Aligned_cols=50 Identities=22% Similarity=0.361 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 286 TELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 286 eeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
..|+..+..|+.+-..+..++..+..+...+..+-..|+.++..++.+|.
T Consensus 352 ~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~ 401 (880)
T PRK02224 352 DDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFG 401 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444445555555555555555566666666666666664
No 275
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=46.83 E-value=1.9e+02 Score=33.79 Aligned_cols=46 Identities=24% Similarity=0.356 Sum_probs=25.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019400 292 VSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMHS 337 (341)
Q Consensus 292 V~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ma 337 (341)
++.|+.|-.+|...+....+++..+..+-..|+.++..|+++|.-+
T Consensus 817 ~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~ 862 (1174)
T KOG0933|consen 817 YERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKV 862 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3344444455555555555555555566666666666666665543
No 276
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=46.82 E-value=3.1e+02 Score=28.01 Aligned_cols=56 Identities=30% Similarity=0.526 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHH------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 019400 258 PVDAKRVRRMLSNRESARRSRRR------KQAHLTELETQVSQLRVENSSLLKRLTDISQKYNE 315 (341)
Q Consensus 258 ~~e~KR~RRklsNRESARRSR~R------Kka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~ 315 (341)
++|.||+.-+|+ |=||-+-.| =+.+-+.+|.++.+|+.+|.-+.++-..+.++|.+
T Consensus 4 ~~dk~ri~~li~--~la~~~~~~e~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~qyre 65 (328)
T PF15369_consen 4 PEDKRRIANLIK--ELARVSEEKEVTEERLKAEQESFEKKIRQLEEQNELIIKEREDLQQQYRE 65 (328)
T ss_pred hhHHHHHHHHHH--HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 456666666664 556655433 34556778888999999998888888888777654
No 277
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.77 E-value=2.1e+02 Score=32.78 Aligned_cols=17 Identities=29% Similarity=0.501 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHh
Q 019400 318 VDNRVLKADVETLRAKV 334 (341)
Q Consensus 318 ~EN~~Lkaqle~LRakV 334 (341)
..+..|..++++|.-++
T Consensus 437 ak~~ql~~eletLn~k~ 453 (1118)
T KOG1029|consen 437 AKKKQLQQELETLNFKL 453 (1118)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444555544443
No 278
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=46.66 E-value=3.2e+02 Score=27.55 Aligned_cols=20 Identities=30% Similarity=0.481 Sum_probs=11.5
Q ss_pred HHHHHHHHHhHHHHHHHHHH
Q 019400 290 TQVSQLRVENSSLLKRLTDI 309 (341)
Q Consensus 290 ~qV~~L~~EN~~L~~rl~~L 309 (341)
.++..|+.||+.|...+..|
T Consensus 60 ~e~s~LkREnq~l~e~c~~l 79 (307)
T PF10481_consen 60 NEYSALKRENQSLMESCENL 79 (307)
T ss_pred hhhhhhhhhhhhHHHHHHHH
Confidence 34556666776665555443
No 279
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=46.62 E-value=1.4e+02 Score=26.77 Aligned_cols=53 Identities=13% Similarity=0.219 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 283 a~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
..+++....+..|...-.....+-..+...+..+..|...|..-.+.++.+|.
T Consensus 21 ~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~ 73 (157)
T PF04136_consen 21 DQTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQ 73 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34555666666777777777777777888888888888888888888888775
No 280
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=46.58 E-value=2e+02 Score=25.22 Aligned_cols=51 Identities=20% Similarity=0.282 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019400 284 HLTELETQVSQLRVEN-SSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 284 ~leeLE~qV~~L~~EN-~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV 334 (341)
.+..|+.....|..|. ..+...+..|---+..+...+..+|..+..|-.-|
T Consensus 63 ~~~~l~~~~~kl~~E~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk~LG~eV 114 (136)
T PF04871_consen 63 EVKELEAEKEKLKEEARKEAQSELDDLLVLLGDLEEKRKKYKERLKELGEEV 114 (136)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHcCCCc
Confidence 3344444444444333 33444555555555556666666666665554433
No 281
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=46.14 E-value=91 Score=27.92 Aligned_cols=28 Identities=14% Similarity=0.156 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 019400 312 KYNEAAVDNRVLKADVETLRAKVMHSSI 339 (341)
Q Consensus 312 k~~~l~~EN~~Lkaqle~LRakV~ma~~ 339 (341)
.|+.+..+-..|..+|..|..+|..|.+
T Consensus 48 eY~aAk~~~~~~e~rI~~L~~~L~~A~i 75 (157)
T PRK01885 48 DYIYGKKRLREIDRRVRFLTKRLENLKV 75 (157)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHccCEE
Confidence 4667777888999999999999998765
No 282
>PRK14127 cell division protein GpsB; Provisional
Probab=45.93 E-value=82 Score=27.13 Aligned_cols=16 Identities=19% Similarity=0.235 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHhh
Q 019400 320 NRVLKADVETLRAKVM 335 (341)
Q Consensus 320 N~~Lkaqle~LRakV~ 335 (341)
|--+...|..|...|-
T Consensus 87 n~DiLKRls~LEk~VF 102 (109)
T PRK14127 87 NYDILKRLSNLEKHVF 102 (109)
T ss_pred hHHHHHHHHHHHHHHh
Confidence 4444445555554443
No 283
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.89 E-value=1.4e+02 Score=34.10 Aligned_cols=64 Identities=16% Similarity=0.194 Sum_probs=49.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 265 RRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVE 328 (341)
Q Consensus 265 RRklsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle 328 (341)
.....+-..=+--+++-...++.|.+++..|+.||.+|..++.........+..++..||.++.
T Consensus 653 e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 653 EELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444455555666677777788888888888888888888888888888888888888888877
No 284
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=45.85 E-value=2.1e+02 Score=32.94 Aligned_cols=67 Identities=16% Similarity=0.178 Sum_probs=42.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 267 MLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAK 333 (341)
Q Consensus 267 klsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRak 333 (341)
..+--++++.+.-.......+|..++..+..+-..+..+.+.....+..+..|-..|..+++.|...
T Consensus 450 i~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~ 516 (980)
T KOG0980|consen 450 IQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRT 516 (980)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666666666666666666666666666666666666666666554
No 285
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=45.63 E-value=1.6e+02 Score=32.52 Aligned_cols=15 Identities=20% Similarity=0.412 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHH
Q 019400 318 VDNRVLKADVETLRA 332 (341)
Q Consensus 318 ~EN~~Lkaqle~LRa 332 (341)
.+|+.|.-++.+|+.
T Consensus 300 ~~r~kL~N~i~eLkG 314 (670)
T KOG0239|consen 300 EERRKLHNEILELKG 314 (670)
T ss_pred HHHHHHHHHHHHhhc
Confidence 555555555555543
No 286
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=45.57 E-value=1.3e+02 Score=24.93 Aligned_cols=41 Identities=20% Similarity=0.337 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLR 331 (341)
Q Consensus 284 ~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LR 331 (341)
.|+.|..-+..|+..|..|..+|..| ...|+..|.++++..
T Consensus 34 ~LD~Lns~LD~LE~rnD~l~~~L~~L-------Lesnrq~R~e~~~~~ 74 (83)
T PF03670_consen 34 MLDQLNSCLDHLEQRNDHLHAQLQEL-------LESNRQIRLEFQEQL 74 (83)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHH-------HHHHHHHHHHHHHHh
Confidence 45555555555555555555555444 566776666655443
No 287
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=45.50 E-value=2.3e+02 Score=27.16 Aligned_cols=38 Identities=13% Similarity=0.222 Sum_probs=13.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019400 297 VENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 297 ~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV 334 (341)
.+...|..++..+......+..+...-..+...|+.+|
T Consensus 75 eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el 112 (246)
T PF00769_consen 75 EEKEQLEQELREAEAEIARLEEESERKEEEAEELQEEL 112 (246)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444333
No 288
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=45.31 E-value=2.4e+02 Score=25.64 Aligned_cols=20 Identities=20% Similarity=0.380 Sum_probs=11.2
Q ss_pred HHHHHHhHHHHHHHHHHHHH
Q 019400 293 SQLRVENSSLLKRLTDISQK 312 (341)
Q Consensus 293 ~~L~~EN~~L~~rl~~L~qk 312 (341)
+.++.++..|..++..|...
T Consensus 85 d~~~~e~k~L~~~v~~Le~e 104 (158)
T PF09744_consen 85 DQWRQERKDLQSQVEQLEEE 104 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666555433
No 289
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=45.25 E-value=46 Score=26.83 Aligned_cols=32 Identities=31% Similarity=0.412 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 019400 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEA 316 (341)
Q Consensus 285 leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l 316 (341)
|..|+.+-+.+.-|+-.|++++..+++++...
T Consensus 10 L~~lQnEWDa~mLE~f~LRk~l~~~rqELs~a 41 (70)
T PF08606_consen 10 LSTLQNEWDALMLENFTLRKQLDQTRQELSHA 41 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666554433
No 290
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=45.23 E-value=35 Score=36.02 Aligned_cols=47 Identities=26% Similarity=0.252 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 286 TELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRA 332 (341)
Q Consensus 286 eeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRa 332 (341)
+.|...|..|.++|.-|..++..+.-+|..+..||+-|+.--..+++
T Consensus 46 e~l~~rv~slsq~Nkvlk~elet~k~kcki~qeenr~l~~Asv~IQa 92 (552)
T KOG2129|consen 46 ESLGARVSSLSQRNKVLKGELETLKGKCKIMQEENRPLLLASVEIQA 92 (552)
T ss_pred HHHHHHHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchhhhhhhHHhh
Confidence 34555555555666556666666655566666666555544444433
No 291
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=45.23 E-value=1e+02 Score=29.05 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCC
Q 019400 316 AAVDNRVLKADVETLRAKVMHSSI 339 (341)
Q Consensus 316 l~~EN~~Lkaqle~LRakV~ma~~ 339 (341)
+..|=..|+.++..|..++.++++
T Consensus 174 v~~eIe~~~~~~~~l~~~v~~sti 197 (262)
T PF14257_consen 174 VRSEIEQLEGQLKYLDDRVDYSTI 197 (262)
T ss_pred HHHHHHHHHHHHHHHHHhhceEEE
Confidence 344445555666677777777665
No 292
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=45.09 E-value=70 Score=28.39 Aligned_cols=40 Identities=20% Similarity=0.245 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 286 TELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKA 325 (341)
Q Consensus 286 eeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lka 325 (341)
...|..+..|+.|...=-.++..|++++..+...|..|..
T Consensus 90 ~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lek 129 (131)
T PF04859_consen 90 KTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEK 129 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444444444444444444555555555555666665543
No 293
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=45.08 E-value=94 Score=33.65 Aligned_cols=46 Identities=24% Similarity=0.349 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVET 329 (341)
Q Consensus 284 ~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~ 329 (341)
.+..+..+...+..||..|..+|.++.++...+..|+..|.+-+..
T Consensus 220 el~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~ 265 (596)
T KOG4360|consen 220 ELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQA 265 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555666677777777777777776666666666555444
No 294
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=44.95 E-value=1.1e+02 Score=24.91 Aligned_cols=34 Identities=29% Similarity=0.512 Sum_probs=21.4
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHhHHHHHHHH
Q 019400 274 ARRSRRRKQ----AHLTELETQVSQLRVENSSLLKRLT 307 (341)
Q Consensus 274 ARRSR~RKk----a~leeLE~qV~~L~~EN~~L~~rl~ 307 (341)
-.+-|.||. ..++.|..++..|..+|..|..++.
T Consensus 62 L~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 62 LKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444443 3566777777777777777776653
No 295
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=44.94 E-value=3.3e+02 Score=27.11 Aligned_cols=74 Identities=22% Similarity=0.244 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 260 DAKRVRRMLSNRESARRSRRRKQAHLT-ELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAK 333 (341)
Q Consensus 260 e~KR~RRklsNRESARRSR~RKka~le-eLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRak 333 (341)
|.|-.-|.+-.+.--=++..|-|.-.- +|+...++-..--.+|..++.+|+++.+++.-.-.-||+.+..|-.|
T Consensus 13 d~rL~v~~LhHQvlTLqcQLRDQ~~ahreLQas~dEa~~L~~~L~~kl~eLqkk~~Ea~lAVtPLKak~AslV~k 87 (277)
T PF15030_consen 13 DLRLRVQQLHHQVLTLQCQLRDQGSAHRELQASRDEATRLQDELQGKLEELQKKQHEANLAVTPLKAKLASLVQK 87 (277)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhccchHHHHHHHHHHH
Confidence 333333444444444444444443332 33333333333333444444444444444444444444444444433
No 296
>PF03449 GreA_GreB_N: Transcription elongation factor, N-terminal; InterPro: IPR022691 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A 2ETN_C 2P4V_B.
Probab=44.81 E-value=1.2e+02 Score=24.00 Aligned_cols=54 Identities=15% Similarity=0.393 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHH-HhHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 019400 286 TELETQVSQLRV-ENSSLLKRLTDIS--------QKYNEAAVDNRVLKADVETLRAKVMHSSI 339 (341)
Q Consensus 286 eeLE~qV~~L~~-EN~~L~~rl~~L~--------qk~~~l~~EN~~Lkaqle~LRakV~ma~~ 339 (341)
..|+.+++.|+. +-.++...+.... ..|+.+..+-..|...|..|..+|..|.|
T Consensus 12 ~~L~~EL~~L~~~~rpe~~~~i~~Ar~~GDlsENaeY~aAke~q~~le~rI~~Le~~l~~a~V 74 (74)
T PF03449_consen 12 EKLQAELEHLKNVERPEIAEEIAEAREQGDLSENAEYHAAKERQAFLEARIRELEERLARAEV 74 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhCcC
Confidence 334444444443 3344444554443 35788888889999999999999988764
No 297
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=44.65 E-value=77 Score=34.46 Aligned_cols=48 Identities=15% Similarity=0.249 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 281 KQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVE 328 (341)
Q Consensus 281 Kka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle 328 (341)
=+.|+..++.+-..+...-..|..++.....++..+..+|..|+.+|+
T Consensus 278 ~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie 325 (581)
T KOG0995|consen 278 FQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIE 325 (581)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777777777777777777777777777777777776654
No 298
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=44.21 E-value=2.3e+02 Score=26.85 Aligned_cols=35 Identities=9% Similarity=0.169 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019400 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAV 318 (341)
Q Consensus 284 ~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~ 318 (341)
+-.....++..|+.|...+..+|..|+.+.+.|..
T Consensus 148 ~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~ 182 (192)
T PF11180_consen 148 RQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQR 182 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555554444443
No 299
>PRK14160 heat shock protein GrpE; Provisional
Probab=44.08 E-value=1.3e+02 Score=28.72 Aligned_cols=43 Identities=16% Similarity=0.291 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADV 327 (341)
Q Consensus 285 leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaql 327 (341)
+..|+.++..|+.++..|..++..+..++..+.++...+|...
T Consensus 56 ~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~ 98 (211)
T PRK14160 56 IEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRT 98 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666666666666555555444444333
No 300
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=43.64 E-value=1.7e+02 Score=25.18 Aligned_cols=51 Identities=20% Similarity=0.337 Sum_probs=19.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019400 267 MLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAA 317 (341)
Q Consensus 267 klsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~ 317 (341)
+...++....+-..=....-.++.++..++.+-..+...+..+.++|..+.
T Consensus 32 ~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~ 82 (150)
T PF07200_consen 32 LQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKE 82 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444433333333334444444444444444444444444444333
No 301
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=43.31 E-value=1.2e+02 Score=32.86 Aligned_cols=58 Identities=12% Similarity=0.158 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019400 279 RRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMH 336 (341)
Q Consensus 279 ~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~m 336 (341)
.++++-+.++.++...+-..-..+.+.|+....+......||..|..+|..|..|++|
T Consensus 194 ~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~ 251 (596)
T KOG4360|consen 194 EKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKY 251 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3455555566666666666666666667777777777777888888888888777765
No 302
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=43.29 E-value=1.2e+02 Score=32.92 Aligned_cols=12 Identities=25% Similarity=0.562 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHh
Q 019400 143 EDYQAVLKSKLN 154 (341)
Q Consensus 143 ~~y~a~Lk~kL~ 154 (341)
.+|..--+.+|+
T Consensus 239 ~e~~~~K~~~l~ 250 (594)
T PF05667_consen 239 EEYRKRKQQRLQ 250 (594)
T ss_pred hhhhHHHHHHHH
Confidence 455444444443
No 303
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=43.17 E-value=7.9 Score=41.87 Aligned_cols=63 Identities=21% Similarity=0.324 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHh
Q 019400 272 ESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNE---AAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 272 ESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~---l~~EN~~Lkaqle~LRakV 334 (341)
|..=..-++|...+.+|..+|..|+..|..|..+...|.+++.. +..+...++.++..|..++
T Consensus 314 E~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l 379 (713)
T PF05622_consen 314 ENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKL 379 (713)
T ss_dssp ------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33333445677889999999999999999988888777766544 3344455555555555443
No 304
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=43.15 E-value=2.2e+02 Score=35.40 Aligned_cols=50 Identities=30% Similarity=0.413 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019400 287 ELETQVSQLRVENSSLLKRLTD-------ISQKYNEAAVDNRVLKADVETLRAKVMH 336 (341)
Q Consensus 287 eLE~qV~~L~~EN~~L~~rl~~-------L~qk~~~l~~EN~~Lkaqle~LRakV~m 336 (341)
++-.++++|+.+|..|..++.+ +....+++...++.|..++.+|+..|.-
T Consensus 1481 e~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeE 1537 (1930)
T KOG0161|consen 1481 ELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEE 1537 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444333 3333444555555555555555555543
No 305
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=42.98 E-value=1.1e+02 Score=25.46 Aligned_cols=38 Identities=24% Similarity=0.230 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 289 ETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLR 331 (341)
Q Consensus 289 E~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LR 331 (341)
..+.+.|..||+.|..+... .+...+|...++..++=.
T Consensus 29 ~~~~~kL~~en~qlk~Ek~~-----~~~qvkn~~vrqknee~~ 66 (87)
T PF10883_consen 29 KKQNAKLQKENEQLKTEKAV-----AETQVKNAKVRQKNEENT 66 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhHHhh
Confidence 33355555555555444433 344466776666665543
No 306
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=42.70 E-value=4e+02 Score=28.47 Aligned_cols=28 Identities=25% Similarity=0.382 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 019400 287 ELETQVSQLRVENSSLLKRLTDISQKYN 314 (341)
Q Consensus 287 eLE~qV~~L~~EN~~L~~rl~~L~qk~~ 314 (341)
.++.++..++.++..+..++..+..++.
T Consensus 64 ~~~~~l~~~~~~~~~~~~~~~~l~~~le 91 (475)
T PRK10361 64 LLNNEVRSLQSINTSLEADLREVTTRME 91 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444443333
No 307
>PF14282 FlxA: FlxA-like protein
Probab=42.63 E-value=1.5e+02 Score=24.93 Aligned_cols=30 Identities=23% Similarity=0.393 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 019400 279 RRKQAHLTELETQVSQLRVENSSLLKRLTD 308 (341)
Q Consensus 279 ~RKka~leeLE~qV~~L~~EN~~L~~rl~~ 308 (341)
..|+..+..|..++..|+.+...|..+...
T Consensus 47 e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~ 76 (106)
T PF14282_consen 47 EQKQQQIQLLQAQIQQLQAQIAQLQSQQAE 76 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666555555555444433
No 308
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=42.56 E-value=2.6e+02 Score=25.19 Aligned_cols=14 Identities=29% Similarity=0.546 Sum_probs=5.4
Q ss_pred HHHhHHHHHHHHHH
Q 019400 296 RVENSSLLKRLTDI 309 (341)
Q Consensus 296 ~~EN~~L~~rl~~L 309 (341)
+.++..|..++..+
T Consensus 79 r~~~e~L~~eie~l 92 (177)
T PF07798_consen 79 RSENEKLQREIEKL 92 (177)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 309
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=42.54 E-value=1.8e+02 Score=30.52 Aligned_cols=69 Identities=16% Similarity=0.251 Sum_probs=38.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 261 AKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRA 332 (341)
Q Consensus 261 ~KR~RRklsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRa 332 (341)
+||.|.+++.-|.-| .++.++..+-..-+..|+.|...|.++++--.++...++.+...|..++++-+.
T Consensus 113 E~khrKli~dLE~dR---e~haqdaaeGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~ 181 (561)
T KOG1103|consen 113 EKKHRKLIKDLEADR---EAHAQDAAEGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKK 181 (561)
T ss_pred HHHHHHHHHHHHHHH---HHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444332 233333333333355677777778777776666666666667777666665443
No 310
>PF08738 Gon7: Gon7 family; InterPro: IPR014849 In Saccharomyces cerevisiae Gon7 is a member of the KEOPS protein complex. A protein complex proposed to be involved in transcription and promoting telomere uncapping and telomere elongation [].
Probab=42.34 E-value=82 Score=26.95 Aligned_cols=33 Identities=24% Similarity=0.369 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHH
Q 019400 283 AHLTELETQVSQLRVE-NSSLLKRLTDISQKYNE 315 (341)
Q Consensus 283 a~leeLE~qV~~L~~E-N~~L~~rl~~L~qk~~~ 315 (341)
.||..|..+|..|+.+ |..|..|+..-..+...
T Consensus 54 t~L~~LR~~lt~lQddIN~fLTeRMe~dK~~~~~ 87 (103)
T PF08738_consen 54 TYLSELRAQLTTLQDDINEFLTERMEEDKARDAQ 87 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 8999999999999987 55788888776555444
No 311
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=42.24 E-value=1.6e+02 Score=22.79 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHH
Q 019400 287 ELETQVSQLRVENSSLLKRLT 307 (341)
Q Consensus 287 eLE~qV~~L~~EN~~L~~rl~ 307 (341)
.|..+|.+|..+...|+..+.
T Consensus 14 ~L~~kvdqLs~dv~~lr~~v~ 34 (56)
T PF04728_consen 14 TLNSKVDQLSSDVNALRADVQ 34 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 312
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=41.95 E-value=1.1e+02 Score=35.73 Aligned_cols=31 Identities=32% Similarity=0.478 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 019400 281 KQAHLTELETQVSQLRVENSSLLKRLTDISQ 311 (341)
Q Consensus 281 Kka~leeLE~qV~~L~~EN~~L~~rl~~L~q 311 (341)
+..++++|+..+..|+.||..|..++..|..
T Consensus 528 ~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 528 LSNKLEELEELLGNLEEENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4467889999999999999999999988765
No 313
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=41.70 E-value=2.8e+02 Score=27.92 Aligned_cols=74 Identities=22% Similarity=0.315 Sum_probs=45.4
Q ss_pred HHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 262 KRVRRMLSNRESARRSRRR-KQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 262 KR~RRklsNRESARRSR~R-Kka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
+..|.-+.+..++-++.++ +-+.+.+|-.++..|+.+-.++..++..+..+-..+-..=..|..++..|+.+..
T Consensus 26 ~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~ 100 (294)
T COG1340 26 KEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRN 100 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334455555666555443 3355666667777777777777777777666666665555556666666665554
No 314
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=41.40 E-value=1.8e+02 Score=23.22 Aligned_cols=29 Identities=14% Similarity=0.200 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019400 309 ISQKYNEAAVDNRVLKADVETLRAKVMHS 337 (341)
Q Consensus 309 L~qk~~~l~~EN~~Lkaqle~LRakV~ma 337 (341)
+..+.-.+.+++..|+.++..++..|..|
T Consensus 41 ~~keNieLKve~~~L~~el~~~~~~l~~a 69 (75)
T PF07989_consen 41 LLKENIELKVEVESLKRELQEKKKLLKEA 69 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555566666666555555433
No 315
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=41.39 E-value=1.5e+02 Score=32.77 Aligned_cols=51 Identities=20% Similarity=0.343 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAK 333 (341)
Q Consensus 283 a~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRak 333 (341)
.+|.+||.+-+.|.+|..++..+++++++..-....|=..||-.++.-+..
T Consensus 93 ~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~ 143 (907)
T KOG2264|consen 93 LELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQ 143 (907)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHH
Confidence 567778888888888888888887777777666666666666666554433
No 316
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=41.37 E-value=2.4e+02 Score=27.72 Aligned_cols=12 Identities=17% Similarity=0.254 Sum_probs=7.1
Q ss_pred ChHHHHHHHHHH
Q 019400 141 NLEDYQAVLKSK 152 (341)
Q Consensus 141 dp~~y~a~Lk~k 152 (341)
|..-...+|+++
T Consensus 65 ~~~~~~e~L~Sr 76 (362)
T TIGR01010 65 DTYTVQEYMRSR 76 (362)
T ss_pred cHHHHHHHHhhH
Confidence 333335788877
No 317
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=41.32 E-value=2.3e+02 Score=24.79 Aligned_cols=26 Identities=12% Similarity=0.259 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 305 RLTDISQKYNEAAVDNRVLKADVETL 330 (341)
Q Consensus 305 rl~~L~qk~~~l~~EN~~Lkaqle~L 330 (341)
++..+..++..+..+=..++.+....
T Consensus 146 ki~~l~~~i~~~e~~~~~~~~~~~~i 171 (218)
T cd07596 146 KVEELEEELEEAESALEEARKRYEEI 171 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444443333333333333
No 318
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.24 E-value=1.9e+02 Score=23.46 Aligned_cols=45 Identities=22% Similarity=0.217 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 284 ~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
++.+||.++..-+.-..+|...+ .+....=..++.++..|-.|++
T Consensus 9 Ri~eLE~r~AfQE~tieeLn~~l-------aEq~~~i~k~q~qlr~L~~kl~ 53 (72)
T COG2900 9 RIIELEIRLAFQEQTIEELNDAL-------AEQQLVIDKLQAQLRLLTEKLK 53 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555554433333333333 3333333445555555555554
No 319
>PRK14127 cell division protein GpsB; Provisional
Probab=41.18 E-value=90 Score=26.88 Aligned_cols=22 Identities=14% Similarity=0.197 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHH
Q 019400 284 HLTELETQVSQLRVENSSLLKR 305 (341)
Q Consensus 284 ~leeLE~qV~~L~~EN~~L~~r 305 (341)
+|+.+-..++.|..||..|..+
T Consensus 31 FLd~V~~dye~l~~e~~~Lk~e 52 (109)
T PRK14127 31 FLDDVIKDYEAFQKEIEELQQE 52 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555555444433
No 320
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=41.13 E-value=2.3e+02 Score=24.32 Aligned_cols=30 Identities=27% Similarity=0.399 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019400 284 HLTELETQVSQLRVENSSLLKRLTDISQKY 313 (341)
Q Consensus 284 ~leeLE~qV~~L~~EN~~L~~rl~~L~qk~ 313 (341)
.|-.++.+++.|...|+.|.++++.|+..+
T Consensus 41 ~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El 70 (102)
T PF10205_consen 41 ALRKLEQENDSLTFRNQQLTKRVEVLQEEL 70 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555554433
No 321
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=40.98 E-value=1.6e+02 Score=28.46 Aligned_cols=57 Identities=21% Similarity=0.295 Sum_probs=30.2
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 265 RRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLR 331 (341)
Q Consensus 265 RRklsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LR 331 (341)
|-.++-|+.++---.+|.+++.. .+.+...|..++..+..+.... |+.||++++...
T Consensus 152 K~vlk~R~~~Q~~le~k~e~l~k-------~~~dr~~~~~ev~~~e~kve~a---~~~~k~e~~Rf~ 208 (243)
T cd07666 152 MGVIKRRDQIQAELDSKVEALAN-------KKADRDLLKEEIEKLEDKVECA---NNALKADWERWK 208 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-------hhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 44555555444444444444444 3444445555555555554444 666777777653
No 322
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=40.98 E-value=62 Score=27.97 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Q 019400 288 LETQVSQLRVENSSLLKRLTDIS 310 (341)
Q Consensus 288 LE~qV~~L~~EN~~L~~rl~~L~ 310 (341)
|..+..+|+.||.-|+-+++.|.
T Consensus 77 lkkk~~~LeEENNlLklKievLL 99 (108)
T cd07429 77 LKKKNQQLEEENNLLKLKIEVLL 99 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666655553
No 323
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=40.88 E-value=58 Score=28.37 Aligned_cols=40 Identities=23% Similarity=0.227 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 019400 258 PVDAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLL 303 (341)
Q Consensus 258 ~~e~KR~RRklsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~ 303 (341)
--|-.|..|+.++|+.++ ++.+++|+.++..|+.+...+.
T Consensus 93 ~~E~~Rs~~ke~~Ke~~~------~~~l~~L~~~i~~L~~~~~~~~ 132 (134)
T PF07047_consen 93 IYEYWRSARKEAKKEEEL------QERLEELEERIEELEEQVEKQQ 132 (134)
T ss_pred HHHHHHHHhhHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 346677777666655533 3566777777777776665543
No 324
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=40.48 E-value=72 Score=26.11 Aligned_cols=47 Identities=17% Similarity=0.155 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 286 TELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRA 332 (341)
Q Consensus 286 eeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRa 332 (341)
.+|..++..-+.|...|..-+..|+.++.....-|..|..+...++.
T Consensus 8 k~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~ 54 (76)
T PF11544_consen 8 KELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQR 54 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444455555555555555555555556666666666655
No 325
>PF03234 CDC37_N: Cdc37 N terminal kinase binding; InterPro: IPR013855 In Saccharomyces cerevisiae (Baker's yeast), cell division control protein Cdc37 is required for the productive formation of Cdc28-cyclin complexes. Cdc37 may be a kinase targeting subunit of Hsp90 [].
Probab=40.35 E-value=2.1e+02 Score=26.56 Aligned_cols=30 Identities=13% Similarity=0.140 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019400 281 KQAHLTELETQVSQLRVENSSLLKRLTDIS 310 (341)
Q Consensus 281 Kka~leeLE~qV~~L~~EN~~L~~rl~~L~ 310 (341)
.++.++.|+.+.......+..+...+..+.
T Consensus 44 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 73 (177)
T PF03234_consen 44 RKQEIEELKYERKINEKLLKRIQKLLSALD 73 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345566666666655555555555554443
No 326
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=40.11 E-value=2e+02 Score=26.90 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019400 317 AVDNRVLKADVETLRAK 333 (341)
Q Consensus 317 ~~EN~~Lkaqle~LRak 333 (341)
...+..|+.+|..|+++
T Consensus 195 e~a~~~Le~ei~~l~~~ 211 (221)
T PF05700_consen 195 EVACEELEQEIEQLKRK 211 (221)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444443
No 327
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=40.06 E-value=1.4e+02 Score=26.24 Aligned_cols=27 Identities=11% Similarity=0.270 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCC
Q 019400 313 YNEAAVDNRVLKADVETLRAKVMHSSI 339 (341)
Q Consensus 313 ~~~l~~EN~~Lkaqle~LRakV~ma~~ 339 (341)
|.....+-+.|...+..|.++|..|.+
T Consensus 44 y~aak~~~~~~e~ri~~L~~~L~~a~i 70 (151)
T TIGR01462 44 YHAAKEEQGFNEGRIAELEDLLANAQV 70 (151)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 666677778888999999999988876
No 328
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=39.81 E-value=2.2e+02 Score=28.71 Aligned_cols=59 Identities=22% Similarity=0.273 Sum_probs=39.3
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 019400 258 PVDAKRVRRMLSNRESARRSRRRKQA---HLTELETQVSQLRVENSSLLKRLTDISQKYNEA 316 (341)
Q Consensus 258 ~~e~KR~RRklsNRESARRSR~RKka---~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l 316 (341)
..-.||+.|++.--..-+|-|..+.+ .+++||.+-++|+..-++|.+++.-|++-+.+.
T Consensus 227 ~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~ 288 (294)
T KOG4571|consen 227 KLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEV 288 (294)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577788887444444555555554 455667788888888888888888876655443
No 329
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=39.70 E-value=2.9e+02 Score=24.96 Aligned_cols=62 Identities=21% Similarity=0.366 Sum_probs=36.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 266 RMLSNRESARRSRRRKQAHLTELETQ-------VSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETL 330 (341)
Q Consensus 266 RklsNRESARRSR~RKka~leeLE~q-------V~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~L 330 (341)
+++.+-+.|...-.||++.++.|... +..+..+...+..++..++.++..+. ..++.+++..
T Consensus 132 ~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is---~~~k~E~~rf 200 (236)
T PF09325_consen 132 KKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEIS---ENIKKELERF 200 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 34445555566666666666555533 55666666666666666666665553 4456665554
No 330
>PRK11546 zraP zinc resistance protein; Provisional
Probab=39.63 E-value=1.5e+02 Score=26.80 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019400 311 QKYNEAAVDNRVLKADVETLRA 332 (341)
Q Consensus 311 qk~~~l~~EN~~Lkaqle~LRa 332 (341)
++...+..|...|+.++.++|.
T Consensus 89 ~kI~aL~kEI~~Lr~kL~e~r~ 110 (143)
T PRK11546 89 SKINAVAKEMENLRQSLDELRV 110 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555444
No 331
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=39.61 E-value=3.8e+02 Score=26.39 Aligned_cols=48 Identities=23% Similarity=0.361 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 288 LETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 288 LE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
+..-+-+...+|..+.+++..-++....+..+...|+++++.|+....
T Consensus 177 ~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~ 224 (258)
T PF15397_consen 177 MQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQ 224 (258)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334455667899999999999999999999999999999999998765
No 332
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=39.54 E-value=2.5e+02 Score=25.67 Aligned_cols=56 Identities=11% Similarity=0.286 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 019400 259 VDAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYN 314 (341)
Q Consensus 259 ~e~KR~RRklsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~ 314 (341)
.-.+..+++++.|.-|+--=+.|-....+|..++.+.+.....+..+|+.+..+..
T Consensus 81 ~a~~Em~KLi~yk~~aKsyAkkKD~Ea~~L~~KLkeEq~kv~~ME~~v~elas~m~ 136 (152)
T PF11500_consen 81 KAEKEMEKLIKYKQLAKSYAKKKDAEAMRLAEKLKEEQEKVAEMERHVTELASQMA 136 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677888888888888888888888888888777777777777777655443
No 333
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=39.44 E-value=3.4e+02 Score=25.70 Aligned_cols=73 Identities=22% Similarity=0.349 Sum_probs=46.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 261 AKRVRRMLSNRESARRSRRRKQAHLTELETQ--------------VSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKAD 326 (341)
Q Consensus 261 ~KR~RRklsNRESARRSR~RKka~leeLE~q--------------V~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaq 326 (341)
.|+.-+++.+-..|..+|.||- +.+|+.+ ..-|+.|-..|...+..=..+...++.|+..+..+
T Consensus 93 qk~~q~Rm~~qL~~aE~rhrr~--i~eLe~EKrkh~~~~aqgDD~t~lLEkEReRLkq~lE~Ek~~~~~~EkE~~K~~~~ 170 (192)
T PF09727_consen 93 QKKMQRRMLEQLAAAEKRHRRT--IQELEEEKRKHAEDMAQGDDFTNLLEKERERLKQQLEQEKAQQKKLEKEHKKLVSQ 170 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555556665553 3344331 34577777788888887777888888888887777
Q ss_pred HHHHHHHhh
Q 019400 327 VETLRAKVM 335 (341)
Q Consensus 327 le~LRakV~ 335 (341)
+.+=+.+.+
T Consensus 171 l~eE~~k~K 179 (192)
T PF09727_consen 171 LEEERTKLK 179 (192)
T ss_pred HHHHHHHHH
Confidence 776666655
No 334
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=39.39 E-value=4.1e+02 Score=26.72 Aligned_cols=48 Identities=21% Similarity=0.369 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 286 TELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAK 333 (341)
Q Consensus 286 eeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRak 333 (341)
.+|..++..+..+-..|..++..+.++.+.+..+=..|-.++.+|+.+
T Consensus 30 ~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~k 77 (294)
T COG1340 30 DELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEK 77 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666666666555555555555555555555543
No 335
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.19 E-value=1.1e+02 Score=29.63 Aligned_cols=52 Identities=19% Similarity=0.195 Sum_probs=26.7
Q ss_pred HHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019400 286 TELETQVSQLR---VENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMHS 337 (341)
Q Consensus 286 eeLE~qV~~L~---~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ma 337 (341)
.+||.+...|. .+|..+..++-.++.+......--..|+.=-..++.+.+.+
T Consensus 55 ~~Le~~l~~L~~~A~~N~~lf~r~~~lq~~Ll~a~sl~d~l~~v~~~~a~~f~l~ 109 (218)
T COG3159 55 RELEEELAALMENARANERLFYRLHALQLDLLDARSLDDLLRRVDRSWARDFGLA 109 (218)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhCCC
Confidence 44555544443 45666777766666665555544444443333355554443
No 336
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=38.96 E-value=3.5e+02 Score=29.25 Aligned_cols=55 Identities=18% Similarity=0.259 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019400 282 QAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMH 336 (341)
Q Consensus 282 ka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~m 336 (341)
..+++.++..|+.|......+..++.....+...+..+-..|+.+.+.++.|-++
T Consensus 44 ~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~~k~~l 98 (618)
T PF06419_consen 44 NRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEELELKKKL 98 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777778888888888888887777777777777777777777777666543
No 337
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=38.96 E-value=1.4e+02 Score=33.40 Aligned_cols=45 Identities=13% Similarity=0.366 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 288 LETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRA 332 (341)
Q Consensus 288 LE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRa 332 (341)
+...+...+.||..|...+..+...+..++.+-..||.+|.++..
T Consensus 46 ~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~ 90 (717)
T PF09730_consen 46 LRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKF 90 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555556666666666666666666666666655543
No 338
>PRK10722 hypothetical protein; Provisional
Probab=38.81 E-value=2.1e+02 Score=28.15 Aligned_cols=63 Identities=16% Similarity=0.250 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHhhHH------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 259 VDAKRVRRMLSNRES------ARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVL 323 (341)
Q Consensus 259 ~e~KR~RRklsNRES------ARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~L 323 (341)
.-.+-.-++...++- +-|.|..|.+ .+-+.|++.|+.++..|..++..+++|+..|..=-|.|
T Consensus 141 ~~lrPL~qlwr~~Q~l~l~LaeEr~Ry~rLQ--q~sD~qlD~lrqq~~~Lq~~L~~t~rKLEnLTdIERqL 209 (247)
T PRK10722 141 AQVRPLYQLWRDGQALQLALAEERQRYQKLQ--QSSDSELDALRQQQQRLQYQLELTTRKLENLTDIERQL 209 (247)
T ss_pred hhhhHHHHHHHHhhHHHHhHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555566666644 6666666654 44457888888888888888888888777666544444
No 339
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=38.79 E-value=3.1e+02 Score=31.81 Aligned_cols=7 Identities=29% Similarity=0.539 Sum_probs=2.9
Q ss_pred HHHHhcC
Q 019400 73 FLQEAQQ 79 (341)
Q Consensus 73 FLeE~~~ 79 (341)
+++|++.
T Consensus 160 iiEEaaG 166 (1163)
T COG1196 160 LIEEAAG 166 (1163)
T ss_pred HHHHHhc
Confidence 4444433
No 340
>PRK00106 hypothetical protein; Provisional
Probab=38.56 E-value=4.5e+02 Score=28.43 Aligned_cols=18 Identities=11% Similarity=0.182 Sum_probs=6.5
Q ss_pred HHHHHHHHHHhHHHHHHH
Q 019400 289 ETQVSQLRVENSSLLKRL 306 (341)
Q Consensus 289 E~qV~~L~~EN~~L~~rl 306 (341)
+.+...|......|..+-
T Consensus 114 ekRee~LekrE~eLe~ke 131 (535)
T PRK00106 114 DRKDENLSSKEKTLESKE 131 (535)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 341
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=38.47 E-value=1e+02 Score=31.00 Aligned_cols=37 Identities=22% Similarity=0.267 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 287 ELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVL 323 (341)
Q Consensus 287 eLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~L 323 (341)
+|+.++++|+..+..|..++..++++...+..++..|
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (389)
T PRK03992 12 ELEEQIRQLELKLRDLEAENEKLERELERLKSELEKL 48 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555555555555555544444444444333
No 342
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=38.37 E-value=3.2e+02 Score=32.10 Aligned_cols=37 Identities=11% Similarity=0.167 Sum_probs=20.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019400 298 ENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 298 EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV 334 (341)
+...|..++..+..+...+..+-+.|..++..|+..|
T Consensus 1055 e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL 1091 (1311)
T TIGR00606 1055 EHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKEL 1091 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555555555566666666666655
No 343
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=38.18 E-value=2.6e+02 Score=24.10 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 309 ISQKYNEAAVDNRVLKADVETLRAK 333 (341)
Q Consensus 309 L~qk~~~l~~EN~~Lkaqle~LRak 333 (341)
..+++..+..+|..|+..|..=+.|
T Consensus 40 ~tkEL~~Ak~e~~~Lr~dl~aG~~R 64 (125)
T PF03245_consen 40 YTKELADAKAEIDRLRADLAAGNKR 64 (125)
T ss_pred HHHHHHHHHhhHHHHHHHHHcCCce
Confidence 3445566677777777776543333
No 344
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=38.15 E-value=2.3e+02 Score=24.84 Aligned_cols=49 Identities=16% Similarity=0.166 Sum_probs=26.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 019400 266 RMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYN 314 (341)
Q Consensus 266 RklsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~ 314 (341)
|....|-.+---|.==++++..||-++..++.-|..|..++..|...+.
T Consensus 15 r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLk 63 (134)
T PF08232_consen 15 RFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALK 63 (134)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555444555556666666555555666666665544333
No 345
>PF07767 Nop53: Nop53 (60S ribosomal biogenesis); InterPro: IPR011687 This entry contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60) []. This protein has been found to interact with herpes simplex type 1 regulatory proteins, but its exact role in the life cycle of the virus is not known [].
Probab=38.13 E-value=1.6e+02 Score=29.55 Aligned_cols=33 Identities=18% Similarity=0.343 Sum_probs=19.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 019400 261 AKRVRRMLSNRESARRSRRRKQAHLTELETQVS 293 (341)
Q Consensus 261 ~KR~RRklsNRESARRSR~RKka~leeLE~qV~ 293 (341)
.+|.-+.++||+-.++-+.+..++...+..++.
T Consensus 275 ~kkKTk~qRnK~~r~k~~~~~~~~~k~~k~~~~ 307 (387)
T PF07767_consen 275 NKKKTKAQRNKEKRRKEEERKEKERKKEKKKIK 307 (387)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556667777666666666665444444433
No 346
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=37.84 E-value=2.6e+02 Score=23.83 Aligned_cols=15 Identities=33% Similarity=0.146 Sum_probs=6.8
Q ss_pred HHHHHHHHhhHHHHH
Q 019400 262 KRVRRMLSNRESARR 276 (341)
Q Consensus 262 KR~RRklsNRESARR 276 (341)
.+.+|.+-.+..+=.
T Consensus 21 ~~~~~~l~~~l~~~l 35 (117)
T COG2919 21 VRRRRILTLVLLALL 35 (117)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333445555544433
No 347
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=37.77 E-value=1.6e+02 Score=27.64 Aligned_cols=50 Identities=20% Similarity=0.272 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 272 ESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVL 323 (341)
Q Consensus 272 ESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~L 323 (341)
.+.-|+|..|.+ ..-..+++.|+.++..|..+|...+.|+..|.-=-+.|
T Consensus 114 L~eEr~Ry~rLQ--qssD~~lD~Lr~qq~~Lq~qL~~T~RKLEnLTDIERQL 163 (179)
T PF13942_consen 114 LSEERARYQRLQ--QSSDSELDALRQQQQRLQYQLDTTTRKLENLTDIERQL 163 (179)
T ss_pred HHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 566677777776 56668889999999999999998888877666444433
No 348
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=37.66 E-value=3.2e+02 Score=31.94 Aligned_cols=37 Identities=14% Similarity=0.206 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019400 301 SLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMHS 337 (341)
Q Consensus 301 ~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ma 337 (341)
.|..++..+..+++....+=..++.++..++..|++.
T Consensus 480 ~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~ 516 (1041)
T KOG0243|consen 480 LLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEE 516 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555565555555566666777777777776553
No 349
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=37.64 E-value=2e+02 Score=25.87 Aligned_cols=26 Identities=15% Similarity=0.268 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019400 284 HLTELETQVSQLRVENSSLLKRLTDI 309 (341)
Q Consensus 284 ~leeLE~qV~~L~~EN~~L~~rl~~L 309 (341)
.+++|+.+++..+.+...|++|...+
T Consensus 162 ei~~lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 162 EIEKLKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 350
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=37.52 E-value=96 Score=31.53 Aligned_cols=39 Identities=28% Similarity=0.267 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKAD 326 (341)
Q Consensus 284 ~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaq 326 (341)
+.-.|.++-+.|+.||..|..++.. +..+..||..|+..
T Consensus 58 ~y~~L~~EN~~Lk~Ena~L~~~l~~----~e~l~~En~~Lr~l 96 (337)
T PRK14872 58 HALVLETENFLLKERIALLEERLKS----YEEANQTPPLFSEI 96 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHh
Confidence 3345555555566666555555433 44556777765543
No 351
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=37.45 E-value=1.4e+02 Score=30.36 Aligned_cols=13 Identities=38% Similarity=0.618 Sum_probs=6.6
Q ss_pred ChHHHHHHHHHHH
Q 019400 141 NLEDYQAVLKSKL 153 (341)
Q Consensus 141 dp~~y~a~Lk~kL 153 (341)
.-++|-+-|++-|
T Consensus 62 ~~~eYv~~l~kaL 74 (342)
T PF06632_consen 62 EVEEYVQELKKAL 74 (342)
T ss_dssp -HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 4456655555543
No 352
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=37.31 E-value=3.7e+02 Score=30.32 Aligned_cols=53 Identities=26% Similarity=0.440 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019400 282 QAHLTELETQVSQLRVENSSLLK---------------------RLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 282 ka~leeLE~qV~~L~~EN~~L~~---------------------rl~~L~qk~~~l~~EN~~Lkaqle~LRakV 334 (341)
..+|.++..++..+..||..|.. .+..|..++..++-||..||-++..|...|
T Consensus 91 e~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~kel 164 (769)
T PF05911_consen 91 EAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKEL 164 (769)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777788888888887665 345567777778888888888877776554
No 353
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=37.23 E-value=1.5e+02 Score=23.80 Aligned_cols=33 Identities=18% Similarity=0.294 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 019400 288 LETQVSQLRVENSSLLKRLTDISQKYNEAAVDN 320 (341)
Q Consensus 288 LE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN 320 (341)
|...|..|..|+.+|..++..+++++..+..+.
T Consensus 1 L~kdv~~l~~EkeeL~~klk~~qeel~~~k~~~ 33 (69)
T PF08912_consen 1 LTKDVANLAKEKEELNNKLKKQQEELQKLKEEE 33 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777766666555444
No 354
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=37.10 E-value=1e+02 Score=30.34 Aligned_cols=32 Identities=31% Similarity=0.422 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 019400 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYN 314 (341)
Q Consensus 283 a~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~ 314 (341)
.-.+.|+.++..|+.||..|+.++..++.+..
T Consensus 32 ~l~~~l~~~~~~lr~e~~~l~~~~~~~~~~~~ 63 (308)
T PF11382_consen 32 NLIDSLEDQFDSLREENDELRAELDALQAQLN 63 (308)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888888888777777755543
No 355
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=37.07 E-value=2e+02 Score=28.91 Aligned_cols=53 Identities=19% Similarity=0.179 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 283 a~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
.|+=.+|.+.+....|-..|..++..|+.+...+.+.=+..|..++-||.-|+
T Consensus 64 ~~~y~~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglrep~k 116 (389)
T PF06216_consen 64 DYIYNKEFERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLREPVK 116 (389)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 56666777777777777777777777766655555555555555555555443
No 356
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=36.98 E-value=1.7e+02 Score=35.99 Aligned_cols=60 Identities=15% Similarity=0.326 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019400 275 RRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 275 RRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV 334 (341)
|..+.+.-..+.+|..+|..|+.+-..|...+..+..++....+++..|+.++...+.|.
T Consensus 1235 Ree~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~ 1294 (1822)
T KOG4674|consen 1235 REENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRN 1294 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666677777777777777777777777777777777777777777766666554
No 357
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=36.78 E-value=78 Score=27.58 Aligned_cols=35 Identities=20% Similarity=0.300 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019400 276 RSRRRKQAHLTELETQVSQLRVENSSLLKRLTDIS 310 (341)
Q Consensus 276 RSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~ 310 (341)
|++++.+..-++++.+++.|+.+..+|..++..++
T Consensus 98 Rs~~ke~~Ke~~~~~~l~~L~~~i~~L~~~~~~~~ 132 (134)
T PF07047_consen 98 RSARKEAKKEEELQERLEELEERIEELEEQVEKQQ 132 (134)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444456777788888887777777766553
No 358
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=36.70 E-value=2.2e+02 Score=22.74 Aligned_cols=38 Identities=16% Similarity=0.165 Sum_probs=17.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 296 RVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAK 333 (341)
Q Consensus 296 ~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRak 333 (341)
+...+.|...++...++...|...+..|-.++..|-..
T Consensus 27 q~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~q 64 (70)
T PF04899_consen 27 QSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQ 64 (70)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444433
No 359
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=36.68 E-value=99 Score=31.57 Aligned_cols=29 Identities=21% Similarity=0.289 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 019400 284 HLTELETQVSQLRVENSSLLKRLTDISQK 312 (341)
Q Consensus 284 ~leeLE~qV~~L~~EN~~L~~rl~~L~qk 312 (341)
.+..|+.+...|+.+...+.+++..++.+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (398)
T PTZ00454 30 ELEFLDIQEEYIKEEQKNLKRELIRAKEE 58 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555544433
No 360
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=36.59 E-value=3.6e+02 Score=25.26 Aligned_cols=53 Identities=13% Similarity=0.137 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019400 282 QAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 282 ka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV 334 (341)
-...+.++.++..|+........+...+...+..|..++..|..+|...+.+.
T Consensus 168 ~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~ 220 (237)
T PF00261_consen 168 SEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKY 220 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456666666666666666666666666666666666666666666655544
No 361
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=36.37 E-value=2.9e+02 Score=24.06 Aligned_cols=51 Identities=18% Similarity=0.237 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 285 LTELETQVSQLRVENSSLLKRLTDISQ-------KYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 285 leeLE~qV~~L~~EN~~L~~rl~~L~q-------k~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
-.+...++..++..+.+|..++=.+.. +...+..+...|+.+++.|...|.
T Consensus 67 ~~~~~~rl~~~r~r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe~L~~~le~l~~~l~ 124 (141)
T PF13874_consen 67 DLETSARLEEARRRHQELSHRLLRVLRKQEILRNRGYALSPEEEELRKRLEALEAQLN 124 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHc
Confidence 455556666666666666665544433 333444555666666666665554
No 362
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=36.33 E-value=1.5e+02 Score=31.84 Aligned_cols=39 Identities=13% Similarity=0.296 Sum_probs=22.7
Q ss_pred HHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 260 DAKRVRRMLSN---RESARRSRRRKQAHLTELETQVSQLRVE 298 (341)
Q Consensus 260 e~KR~RRklsN---RESARRSR~RKka~leeLE~qV~~L~~E 298 (341)
..++.++.++- +-.++....-+++.+++++.+|+.|+..
T Consensus 165 ~~~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~ 206 (555)
T TIGR03545 165 TAEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKK 206 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhc
Confidence 34444443333 3333444444456788888888888875
No 363
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=36.21 E-value=2.3e+02 Score=30.51 Aligned_cols=8 Identities=13% Similarity=0.704 Sum_probs=4.4
Q ss_pred HHHHHHHh
Q 019400 70 FQRFLQEA 77 (341)
Q Consensus 70 FerFLeE~ 77 (341)
|+.||...
T Consensus 67 y~~~l~~~ 74 (650)
T TIGR03185 67 YEQYLRGL 74 (650)
T ss_pred HHHHHHHH
Confidence 55666544
No 364
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=36.18 E-value=4.1e+02 Score=29.60 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHH
Q 019400 285 LTELETQVSQLRVENSSLLKRL 306 (341)
Q Consensus 285 leeLE~qV~~L~~EN~~L~~rl 306 (341)
+.+|+.+.+.|+..-..|..++
T Consensus 581 L~~l~e~~~~l~~~ae~LaeR~ 602 (717)
T PF10168_consen 581 LQELQEERKSLRESAEKLAERY 602 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444433333333333
No 365
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=35.97 E-value=1.5e+02 Score=29.29 Aligned_cols=54 Identities=19% Similarity=0.302 Sum_probs=25.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHH
Q 019400 261 AKRVRRMLSNRESARRSRRRKQAHLTELETQ-VSQLRVENSSLLKRLTDISQKYN 314 (341)
Q Consensus 261 ~KR~RRklsNRESARRSR~RKka~leeLE~q-V~~L~~EN~~L~~rl~~L~qk~~ 314 (341)
++++-|+|..---+=|-.+||.+--.+|..+ -..+-.|.++|.+++..|..+++
T Consensus 184 ~~~qv~~in~qlErLRL~krrlQl~g~Ld~~~q~~~~ae~seLq~r~~~l~~~L~ 238 (289)
T COG4985 184 VEQQVRVINSQLERLRLEKRRLQLNGQLDDEFQQHYVAEKSELQKRLAQLQTELD 238 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555544445433 23344444444444444433333
No 366
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=35.91 E-value=3.3e+02 Score=24.56 Aligned_cols=15 Identities=27% Similarity=0.368 Sum_probs=7.5
Q ss_pred HHHHHHHHHHhHHHH
Q 019400 144 DYQAVLKSKLNLACA 158 (341)
Q Consensus 144 ~y~a~Lk~kL~~~ca 158 (341)
+|-..|-.+|...+.
T Consensus 31 ~~~~~le~~Lk~l~~ 45 (236)
T PF09325_consen 31 DYVDKLEEQLKKLYK 45 (236)
T ss_pred HHHHHHHHHHHHHHH
Confidence 454555555554444
No 367
>KOG3341 consensus RNA polymerase II transcription factor complex subunit [Transcription]
Probab=35.56 E-value=1.6e+02 Score=28.75 Aligned_cols=55 Identities=13% Similarity=0.182 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 019400 286 TELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMHSSIS 340 (341)
Q Consensus 286 eeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ma~~~ 340 (341)
+=+|.|..++..+-..+...|.+..+++...-..|...|.+-+++.+.++.+.+.
T Consensus 25 ~l~e~Ql~q~~~Ql~~f~~~LeeFA~kH~~ei~knsqFR~~Fq~Mca~IGvDPla 79 (249)
T KOG3341|consen 25 ELAEQQLVQMSKQLEVFQEALEEFARKHKTEIRKNSQFRNQFQEMCASIGVDPLA 79 (249)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHcCCCccc
Confidence 3456788888888888999999999999999999999999999999999987764
No 368
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=35.45 E-value=3.1e+02 Score=28.43 Aligned_cols=44 Identities=20% Similarity=0.253 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Q 019400 287 ELETQVSQLRVENSSLLKRLTDISQKYNEAA--VDNRVLKADVETL 330 (341)
Q Consensus 287 eLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~--~EN~~Lkaqle~L 330 (341)
.++.++..++.+...|..++..|++++..+. ..|.-|.+|++.|
T Consensus 96 ~~~~~l~~~e~~~~~l~~q~~~Lq~~~~~ls~~~~~dWlLaEaeyL 141 (390)
T PRK10920 96 QQAKALDQANRQQAALAKQLDELQQKVATISGSDAKTWLLAQADFL 141 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHH
Confidence 3334444555555555555555555555544 2245555555554
No 369
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.27 E-value=3.7e+02 Score=30.95 Aligned_cols=24 Identities=17% Similarity=0.218 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 312 KYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 312 k~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
+...+..|=..|.-+++.|..||.
T Consensus 438 k~~ql~~eletLn~k~qqls~kl~ 461 (1118)
T KOG1029|consen 438 KKKQLQQELETLNFKLQQLSGKLQ 461 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Confidence 333444444444444444444443
No 370
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=34.99 E-value=1.8e+02 Score=24.81 Aligned_cols=47 Identities=23% Similarity=0.284 Sum_probs=23.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 019400 269 SNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDN 320 (341)
Q Consensus 269 sNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN 320 (341)
-||.+++-.++-...|--.|. -+.|+..|..++..+..+......+.
T Consensus 57 QNRq~~~dr~ra~~D~~inl~-----ae~ei~~l~~~l~~l~~~~~~~~~~~ 103 (108)
T PF06210_consen 57 QNRQAARDRLRAELDYQINLK-----AEQEIERLHRKLDALREKLGELLERD 103 (108)
T ss_pred hhHhHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 467766643333333333222 23345566666666665555555444
No 371
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=34.97 E-value=4.3e+02 Score=27.51 Aligned_cols=42 Identities=14% Similarity=0.094 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 289 ETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETL 330 (341)
Q Consensus 289 E~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~L 330 (341)
..-...+..+..+|..++..+.++...+..+=..|+.++..|
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 130 FQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333334444444444444444444444444444444444433
No 372
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=34.82 E-value=3.3e+02 Score=25.98 Aligned_cols=60 Identities=13% Similarity=0.096 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019400 258 PVDAKRVRRMLSNRESARRSRRRKQAHL----TELETQVSQLRVENSSLLKRLTDISQKYNEAA 317 (341)
Q Consensus 258 ~~e~KR~RRklsNRESARRSR~RKka~l----eeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~ 317 (341)
++-.+|.||....+.++=.-+-+=.+.+ ...-.++..|+..|+.|.....+|+.-|..+.
T Consensus 19 eel~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLD 82 (195)
T PF10226_consen 19 EELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLD 82 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 3457888888887776644333222211 11223344555555555555555544444433
No 373
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=34.80 E-value=1.9e+02 Score=30.68 Aligned_cols=43 Identities=28% Similarity=0.305 Sum_probs=24.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 291 QVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAK 333 (341)
Q Consensus 291 qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRak 333 (341)
|..+-.-||..|...+..-++-+..-..||..|.+.-++|..+
T Consensus 436 QYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnR 478 (593)
T KOG4807|consen 436 QYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNR 478 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhH
Confidence 4444456777777777665555555555555554444444433
No 374
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=34.76 E-value=32 Score=36.51 Aligned_cols=27 Identities=19% Similarity=0.458 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019400 284 HLTELETQVSQLRVENSSLLKRLTDIS 310 (341)
Q Consensus 284 ~leeLE~qV~~L~~EN~~L~~rl~~L~ 310 (341)
+|++|++|+++|+++...|..++..++
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v~k~e 58 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRVDKVE 58 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccccchhh
Confidence 566666666666666555555554443
No 375
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=34.70 E-value=3e+02 Score=24.46 Aligned_cols=26 Identities=19% Similarity=0.335 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccC
Q 019400 313 YNEAAVDNRVLKADVETLRAKVMHSS 338 (341)
Q Consensus 313 ~~~l~~EN~~Lkaqle~LRakV~ma~ 338 (341)
|.....+-..|+..+..|+.++..++
T Consensus 147 y~~~~~~~~~l~~~i~~l~rk~~~l~ 172 (177)
T PF13870_consen 147 YDKTKEEVEELRKEIKELERKVEILE 172 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555556666666666655443
No 376
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=34.54 E-value=2.1e+02 Score=21.95 Aligned_cols=36 Identities=28% Similarity=0.285 Sum_probs=19.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 292 VSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 292 V~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
...|+.-|.-|..+.... .|+..|++|-.+||..|+
T Consensus 22 ~~~l~rY~~vL~~R~~l~--------~e~~~L~~qN~eLr~lLk 57 (60)
T PF14775_consen 22 ENFLKRYNKVLLDRAALI--------QEKESLEQQNEELRSLLK 57 (60)
T ss_pred HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Confidence 345666666666665543 334444444455555544
No 377
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=34.43 E-value=2.6e+02 Score=22.94 Aligned_cols=17 Identities=35% Similarity=0.425 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019400 281 KQAHLTELETQVSQLRV 297 (341)
Q Consensus 281 Kka~leeLE~qV~~L~~ 297 (341)
|+..++.|-.-|..|+.
T Consensus 17 K~eEI~rLn~lv~sLR~ 33 (76)
T PF11544_consen 17 KQEEIDRLNILVGSLRG 33 (76)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 378
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=34.27 E-value=3.2e+02 Score=23.86 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHH
Q 019400 285 LTELETQVSQLRVENSSLLKRL 306 (341)
Q Consensus 285 leeLE~qV~~L~~EN~~L~~rl 306 (341)
..++...+.+|+.++....+++
T Consensus 92 ~~~~a~~~~~l~~~Le~ae~~~ 113 (139)
T PF13935_consen 92 NEDIALDVQKLRVELEAAEKRI 113 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555554444444
No 379
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=34.19 E-value=1.7e+02 Score=31.16 Aligned_cols=36 Identities=19% Similarity=0.320 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 300 SSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 300 ~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
.+|..++..+..+...+..+|..|++....++.+++
T Consensus 385 ~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~ 420 (493)
T KOG0804|consen 385 QQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLK 420 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 334445555556666666777777777666666654
No 380
>PRK15396 murein lipoprotein; Provisional
Probab=34.14 E-value=2.6e+02 Score=22.81 Aligned_cols=35 Identities=14% Similarity=0.245 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019400 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAV 318 (341)
Q Consensus 284 ~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~ 318 (341)
.++.|..+|+.|..+-.+|...+..++.....+..
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~ 60 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKD 60 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666666555444433
No 381
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=34.10 E-value=3.1e+02 Score=26.31 Aligned_cols=51 Identities=16% Similarity=0.183 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 280 RKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETL 330 (341)
Q Consensus 280 RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~L 330 (341)
....+|.+++.+.+.|..|-..+..+|..+.+....++..=..++.+-...
T Consensus 29 ~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~ 79 (230)
T PF10146_consen 29 NEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKR 79 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344678888888888888888888877777777666654444444444433
No 382
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=33.99 E-value=2.4e+02 Score=30.13 Aligned_cols=52 Identities=25% Similarity=0.344 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 281 KQAHLTELETQVSQLRVENSSLL--------KRLTDISQKYNEAAVDNRVLKADVETLRA 332 (341)
Q Consensus 281 Kka~leeLE~qV~~L~~EN~~L~--------~rl~~L~qk~~~l~~EN~~Lkaqle~LRa 332 (341)
-++-+++|..+...|+...-.+. .+..+|.+....+..+|+.|+.|-+.|..
T Consensus 372 tqELieelrkelehlr~~kl~~a~p~rgrsSaRe~eleqevkrLrq~nr~l~eqneelng 431 (502)
T KOG0982|consen 372 TQELIEELRKELEHLRRRKLVLANPVRGRSSAREIELEQEVKRLRQPNRILSEQNEELNG 431 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHhccccchhhhhhhhhhh
Confidence 34556677777777666554443 45666777777777777777777776654
No 383
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=33.92 E-value=1.8e+02 Score=30.97 Aligned_cols=30 Identities=27% Similarity=0.430 Sum_probs=22.6
Q ss_pred cCCCCCCCCccchhhhhhHHHhhccccccccccc
Q 019400 13 THPQTSKPKNKTARITKVTKIWRKMDRVFSVGEI 46 (341)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~Me~VfSvdei 46 (341)
.||..+.|||....|..- -+|++-||+.-=
T Consensus 2 e~~~~~~~~~~~~~~~as----~~meSscss~ss 31 (552)
T KOG2129|consen 2 EHPKRPTPKNEALHIDAS----GRMESSCSSHSS 31 (552)
T ss_pred CCCCCCCCCccccccccc----ccccCCcccccC
Confidence 488888899887777643 479999987643
No 384
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=33.62 E-value=3.8e+02 Score=27.40 Aligned_cols=26 Identities=8% Similarity=-0.009 Sum_probs=18.2
Q ss_pred CChHHHH---HHHHHHHhHHHHHHHHHhh
Q 019400 140 QNLEDYQ---AVLKSKLNLACAAVALSRA 165 (341)
Q Consensus 140 ~dp~~y~---a~Lk~kL~~~caAva~~r~ 165 (341)
+|+.+|. ..|+.+|....|-++..+|
T Consensus 90 ld~~~~~~~~~~~~~~~~~~~~~~~rL~a 118 (457)
T TIGR01000 90 YDNGNEENQKQLLEQQLDNLKDQKKSLDT 118 (457)
T ss_pred ECchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4888885 4566777777777766655
No 385
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=33.51 E-value=2.7e+02 Score=30.18 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019400 310 SQKYNEAAVDNRVLKADVETLRAKVMH 336 (341)
Q Consensus 310 ~qk~~~l~~EN~~Lkaqle~LRakV~m 336 (341)
..++..+...-..|+.++..+++++..
T Consensus 344 ~~~~~~a~~~~~~L~~~l~~~~~~~~~ 370 (754)
T TIGR01005 344 LMQADAAQARESQLVSDVNQLKAASAQ 370 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444555677777777776643
No 386
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=33.51 E-value=1.2e+02 Score=28.86 Aligned_cols=30 Identities=27% Similarity=0.296 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019400 280 RKQAHLTELETQVSQLRVENSSLLKRLTDI 309 (341)
Q Consensus 280 RKka~leeLE~qV~~L~~EN~~L~~rl~~L 309 (341)
|++...+-|..++..|+.++..|+..+..+
T Consensus 77 r~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 77 RKKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred HHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 344445666667777777777777766664
No 387
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=33.46 E-value=1.4e+02 Score=30.36 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH
Q 019400 283 AHLTELETQVSQLRVENSSLLKRLT 307 (341)
Q Consensus 283 a~leeLE~qV~~L~~EN~~L~~rl~ 307 (341)
+|++.|+.+++.|+.+-.+|..++.
T Consensus 242 ~~~~~l~~~~~~~~~~i~~l~~~l~ 266 (406)
T PF02388_consen 242 EYLESLQEKLEKLEKEIEKLEEKLE 266 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466667777777766666666543
No 388
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=33.45 E-value=2.9e+02 Score=28.32 Aligned_cols=55 Identities=16% Similarity=0.302 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019400 282 QAHLTELETQVSQLRVE------NSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMH 336 (341)
Q Consensus 282 ka~leeLE~qV~~L~~E------N~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~m 336 (341)
+.+++.|+..+..|... ......++..+.+.+..+..+-..|+.++..|+..+..
T Consensus 347 ~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~ 407 (451)
T PF03961_consen 347 KEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELER 407 (451)
T ss_pred HHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555554444431 22344555556666666666666666666666665543
No 389
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=33.38 E-value=4e+02 Score=30.39 Aligned_cols=41 Identities=22% Similarity=0.351 Sum_probs=29.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 292 VSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRA 332 (341)
Q Consensus 292 V~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRa 332 (341)
.+.|..|-..+.+++..++..-..+..++..|++++..|++
T Consensus 218 kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~ 258 (916)
T KOG0249|consen 218 KNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRR 258 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 44566666667777777777777777777888888877774
No 390
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=33.19 E-value=1.1e+02 Score=25.76 Aligned_cols=17 Identities=47% Similarity=0.565 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019400 317 AVDNRVLKADVETLRAK 333 (341)
Q Consensus 317 ~~EN~~Lkaqle~LRak 333 (341)
..||..||.-+.-.+.+
T Consensus 91 ~~E~diLKKa~~~~~~~ 107 (121)
T PRK09413 91 TMENELLKEAVEYGRAK 107 (121)
T ss_pred HHHHHHHHHHHHHhchh
Confidence 45555555555444443
No 391
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=33.15 E-value=3e+02 Score=34.30 Aligned_cols=65 Identities=23% Similarity=0.337 Sum_probs=45.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 267 MLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLR 331 (341)
Q Consensus 267 klsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LR 331 (341)
.+.-.+.+++++.-=++++...+.++..|+.|..+|...+..+...-..+..|...+...+..++
T Consensus 1644 lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~ 1708 (1930)
T KOG0161|consen 1644 LQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNELN 1708 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 33466778888877777788888888888888777777777766666666655555555555544
No 392
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=33.11 E-value=99 Score=31.43 Aligned_cols=41 Identities=12% Similarity=0.127 Sum_probs=25.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019400 290 TQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 290 ~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV 334 (341)
...-.|+.||++|++++..|+++.... ..++.+...|+..+
T Consensus 57 ~~y~~L~~EN~~Lk~Ena~L~~~l~~~----e~l~~En~~Lr~ll 97 (337)
T PRK14872 57 SHALVLETENFLLKERIALLEERLKSY----EEANQTPPLFSEIL 97 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhh
Confidence 455677888888888888776665543 23344444455443
No 393
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=33.00 E-value=78 Score=29.83 Aligned_cols=29 Identities=17% Similarity=0.352 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019400 306 LTDISQKYNEAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 306 l~~L~qk~~~l~~EN~~Lkaqle~LRakV 334 (341)
..-|..+|..+..+|..|..++.+|++.+
T Consensus 114 ~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~ 142 (198)
T KOG0483|consen 114 YESLKRQLESLRSENDRLQSEVQELVAEL 142 (198)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 33333444444444444444444444433
No 394
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=32.98 E-value=3.3e+02 Score=23.97 Aligned_cols=60 Identities=18% Similarity=0.319 Sum_probs=39.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---------HHHHHHHHHHHHHH
Q 019400 264 VRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQ---------KYNEAAVDNRVLKA 325 (341)
Q Consensus 264 ~RRklsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~q---------k~~~l~~EN~~Lka 325 (341)
+--++-|.|.||--+.+..+ +.++.++..+..-...+..++..+.+ +|..+..+...++.
T Consensus 35 e~q~L~~kE~~r~~~~k~~a--e~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~eYk~llk~y~~~~~ 103 (126)
T PF09403_consen 35 EYQQLEQKEEARYNEEKQEA--EAAEAELAELKELYAEIEEKIEKLKQDSKVRWYKDEYKELLKKYKDLLN 103 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Confidence 34567788888887777666 67888888877776666666665533 35555554444333
No 395
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=32.75 E-value=5.1e+02 Score=25.84 Aligned_cols=10 Identities=10% Similarity=0.597 Sum_probs=5.9
Q ss_pred chhhHHHHHH
Q 019400 65 ESEWAFQRFL 74 (341)
Q Consensus 65 ~SEWaFerFL 74 (341)
...|.|+.|+
T Consensus 46 ~~~~sl~~~v 55 (312)
T smart00787 46 EEDCSLDQYV 55 (312)
T ss_pred cCCCCHHHHH
Confidence 3446666666
No 396
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=32.71 E-value=3.2e+02 Score=28.93 Aligned_cols=65 Identities=20% Similarity=0.315 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019400 272 ESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMH 336 (341)
Q Consensus 272 ESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~m 336 (341)
+.++..=.+.+..+..|...|..|+.+-......+..+.++.......-..|..++..++..|..
T Consensus 291 e~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea 355 (522)
T PF05701_consen 291 EEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEA 355 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHH
Confidence 33444444555555666666666666666666666667766666666667777777777776644
No 397
>PF15136 UPF0449: Uncharacterised protein family UPF0449
Probab=32.71 E-value=2.3e+02 Score=24.13 Aligned_cols=40 Identities=20% Similarity=0.221 Sum_probs=29.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 290 TQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVET 329 (341)
Q Consensus 290 ~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~ 329 (341)
.|+..+-.-|+.|..-...|.+++..|..-+..|..+|..
T Consensus 57 ~Qs~~Yv~~NerLqqa~~~Lkkk~e~L~~age~Le~~i~~ 96 (97)
T PF15136_consen 57 QQSRTYVAMNERLQQARDQLKKKCEELRQAGEELERDIEQ 96 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455555667777777788888888888888888777653
No 398
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=32.57 E-value=48 Score=24.92 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHH
Q 019400 283 AHLTELETQVSQLRVENSSLLK 304 (341)
Q Consensus 283 a~leeLE~qV~~L~~EN~~L~~ 304 (341)
.++.+||.+|..|+.-|..|..
T Consensus 18 vrv~eLEeEV~~LrKINrdLfd 39 (48)
T PF14077_consen 18 VRVSELEEEVRTLRKINRDLFD 39 (48)
T ss_pred eeHHHHHHHHHHHHHHhHHHHh
Confidence 5678999999999999988864
No 399
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=32.45 E-value=5.9e+02 Score=27.23 Aligned_cols=15 Identities=13% Similarity=0.242 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHhHHH
Q 019400 288 LETQVSQLRVENSSL 302 (341)
Q Consensus 288 LE~qV~~L~~EN~~L 302 (341)
+..+...++.++..|
T Consensus 72 ~~~~~~~~~~~~~~l 86 (475)
T PRK10361 72 LQSINTSLEADLREV 86 (475)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 400
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=32.40 E-value=2.6e+02 Score=28.42 Aligned_cols=13 Identities=23% Similarity=0.516 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 019400 279 RRKQAHLTELETQ 291 (341)
Q Consensus 279 ~RKka~leeLE~q 291 (341)
..|-+.+..|+.+
T Consensus 24 ~qKleel~~lQ~~ 36 (330)
T PF07851_consen 24 KQKLEELSKLQDK 36 (330)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444433
No 401
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=32.37 E-value=3.6e+02 Score=27.56 Aligned_cols=55 Identities=20% Similarity=0.293 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 019400 285 LTELETQVSQLRVENSSLLKRLT---DISQKYNEAAVDNRVLKADVETLRAKVMHSSI 339 (341)
Q Consensus 285 leeLE~qV~~L~~EN~~L~~rl~---~L~qk~~~l~~EN~~Lkaqle~LRakV~ma~~ 339 (341)
++.|+.++..|+.+-..+..++. ....++..+..+-...+.....|-.++..+.+
T Consensus 326 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~~ 383 (498)
T TIGR03007 326 IASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRESAEV 383 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444333333333 33445556666666666666677666665543
No 402
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=32.18 E-value=5e+02 Score=30.62 Aligned_cols=41 Identities=17% Similarity=0.141 Sum_probs=33.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019400 294 QLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 294 ~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV 334 (341)
++-..|..|.+++....++.+.+..+|...+.++..+++..
T Consensus 262 ~~~~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~ 302 (1109)
T PRK10929 262 AQFKINRELSQALNQQAQRMDLIASQQRQAASQTLQVRQAL 302 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456899999999999999999999988888887776654
No 403
>PHA03161 hypothetical protein; Provisional
Probab=32.17 E-value=3.9e+02 Score=24.51 Aligned_cols=24 Identities=13% Similarity=0.158 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Q 019400 286 TELETQVSQLRVENSSLLKRLTDI 309 (341)
Q Consensus 286 eeLE~qV~~L~~EN~~L~~rl~~L 309 (341)
.+++..|..|.....+..++++.|
T Consensus 57 ~~i~~~v~~l~~~I~~k~kE~~~L 80 (150)
T PHA03161 57 KSIEGMLQAVDLSIQEKKKELSLL 80 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444
No 404
>PRK11546 zraP zinc resistance protein; Provisional
Probab=32.16 E-value=3.7e+02 Score=24.29 Aligned_cols=16 Identities=19% Similarity=0.270 Sum_probs=7.1
Q ss_pred HHHHHHHhHHHHHHHH
Q 019400 292 VSQLRVENSSLLKRLT 307 (341)
Q Consensus 292 V~~L~~EN~~L~~rl~ 307 (341)
|..|..|...|+.+|.
T Consensus 91 I~aL~kEI~~Lr~kL~ 106 (143)
T PRK11546 91 INAVAKEMENLRQSLD 106 (143)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444443
No 405
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=32.15 E-value=4.9e+02 Score=26.84 Aligned_cols=19 Identities=21% Similarity=0.422 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 019400 316 AAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 316 l~~EN~~Lkaqle~LRakV 334 (341)
+..+-+.|++++..|..++
T Consensus 71 l~~~~~~l~~~~~~~~~~~ 89 (425)
T PRK05431 71 LIAEVKELKEEIKALEAEL 89 (425)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444555555444444
No 406
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=32.10 E-value=1e+02 Score=26.64 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Q 019400 286 TELETQVSQLRVENSSLLKRLTD 308 (341)
Q Consensus 286 eeLE~qV~~L~~EN~~L~~rl~~ 308 (341)
..||++-+-|+-++.-|+.-|++
T Consensus 82 ~~LeEENNlLklKievLLDMLte 104 (108)
T cd07429 82 QQLEEENNLLKLKIEVLLDMLAE 104 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555443
No 407
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=32.09 E-value=78 Score=29.84 Aligned_cols=43 Identities=19% Similarity=0.326 Sum_probs=30.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019400 294 QLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMH 336 (341)
Q Consensus 294 ~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~m 336 (341)
+|+.+...|+.++..|......+..|+..|++++..+.....+
T Consensus 109 qlE~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~~~~~~~~~ 151 (198)
T KOG0483|consen 109 QLEKDYESLKRQLESLRSENDRLQSEVQELVAELSSLKREMQK 151 (198)
T ss_pred hhhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhcc
Confidence 3444555566666666666777788888888888887776665
No 408
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=32.08 E-value=2.2e+02 Score=28.65 Aligned_cols=42 Identities=26% Similarity=0.350 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019400 277 SRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAV 318 (341)
Q Consensus 277 SR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~ 318 (341)
-|++....+++|+.+...|..+|...+..|..|..++..+..
T Consensus 102 ~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~ 143 (355)
T PF09766_consen 102 QRKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKK 143 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 366777888899999999999999888888888777665543
No 409
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=32.05 E-value=2.3e+02 Score=29.01 Aligned_cols=76 Identities=13% Similarity=0.239 Sum_probs=36.7
Q ss_pred CCC-hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 255 NMD-PVDAKRVRRMLSNRESARRSRRRKQAHLTELETQV------SQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADV 327 (341)
Q Consensus 255 ~~d-~~e~KR~RRklsNRESARRSR~RKka~leeLE~qV------~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaql 327 (341)
+.+ +.-.++..++....+..+..-.+=+..+..|+..- ......-..|...+..+.+++..+..+-..|+.++
T Consensus 326 g~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l 405 (451)
T PF03961_consen 326 GVDRPELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEEL 405 (451)
T ss_pred ecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445 44444444444444444444444444455444411 12233334455555555555555555555666666
Q ss_pred HHH
Q 019400 328 ETL 330 (341)
Q Consensus 328 e~L 330 (341)
+.+
T Consensus 406 ~~~ 408 (451)
T PF03961_consen 406 ERS 408 (451)
T ss_pred Hhh
Confidence 655
No 410
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=31.89 E-value=2.8e+02 Score=23.61 Aligned_cols=41 Identities=17% Similarity=0.263 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019400 270 NRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDIS 310 (341)
Q Consensus 270 NRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~ 310 (341)
-||.|+.-..=++...+.|+.--++|..|...-.++|..+.
T Consensus 56 krE~A~E~~Y~r~~EkEqL~~Lk~kl~~e~~~~~k~i~~le 96 (100)
T PF04568_consen 56 KREAAQEEQYFRKKEKEQLKKLKEKLKEEIEHHRKEIDELE 96 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666665554544444444444444444444444444443
No 411
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=31.85 E-value=1.3e+02 Score=27.84 Aligned_cols=36 Identities=19% Similarity=0.318 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019400 282 QAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAA 317 (341)
Q Consensus 282 ka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~ 317 (341)
.+++..|+.+.+.|..+|..|..+...+.+.|..|.
T Consensus 110 ~~e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li 145 (170)
T PRK13923 110 SEQIGKLQEEEEKLSWENQTLKQELAITEEDYRALI 145 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888888888888888888888877776665
No 412
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=31.84 E-value=2.6e+02 Score=28.14 Aligned_cols=44 Identities=25% Similarity=0.345 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Q 019400 287 ELETQVSQLRVENSSLLKRLTDISQKYNEAA--VDNRVLKADVETL 330 (341)
Q Consensus 287 eLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~--~EN~~Lkaqle~L 330 (341)
.++..+..|+.+...+..++..++++...+. ..+..+.+|++.|
T Consensus 90 ~~~~~~~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~dW~LaEaeyL 135 (372)
T PF04375_consen 90 QQQEQLQQLQQELAQLQQQLAELQQQLAALSQRSRDDWLLAEAEYL 135 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHH
Confidence 3444455555555556666666666655554 3445566777666
No 413
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=31.82 E-value=4.4e+02 Score=31.44 Aligned_cols=34 Identities=24% Similarity=0.383 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 302 LLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 302 L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
+..++......+..+..+-+.|+.++..+|++|.
T Consensus 554 ~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrve 587 (1293)
T KOG0996|consen 554 LKQELKEKEKELPKLRKEERNLKSQLNKLRQRVE 587 (1293)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444545555555555543
No 414
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=31.66 E-value=3e+02 Score=31.25 Aligned_cols=19 Identities=26% Similarity=0.347 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 019400 318 VDNRVLKADVETLRAKVMH 336 (341)
Q Consensus 318 ~EN~~Lkaqle~LRakV~m 336 (341)
.+...|-.++..||..|..
T Consensus 580 ~~~~~lvqqv~dLR~~L~~ 598 (961)
T KOG4673|consen 580 ERESMLVQQVEDLRQTLSK 598 (961)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555443
No 415
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=31.58 E-value=4.7e+02 Score=24.98 Aligned_cols=17 Identities=29% Similarity=0.300 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019400 316 AAVDNRVLKADVETLRA 332 (341)
Q Consensus 316 l~~EN~~Lkaqle~LRa 332 (341)
|...|..|+.+-++||.
T Consensus 60 LKe~NqkLqedNqELRd 76 (195)
T PF10226_consen 60 LKEVNQKLQEDNQELRD 76 (195)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 416
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.47 E-value=4.1e+02 Score=27.54 Aligned_cols=46 Identities=15% Similarity=0.239 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVET 329 (341)
Q Consensus 284 ~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~ 329 (341)
.++.|...-+.|..--++|....+.|.++.+.+...=.+|+.++++
T Consensus 233 eq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 233 EQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3344444444555555566666666666666666666777776666
No 417
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=31.31 E-value=18 Score=32.85 Aligned_cols=45 Identities=31% Similarity=0.347 Sum_probs=1.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 288 LETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRA 332 (341)
Q Consensus 288 LE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRa 332 (341)
|..+|..|..||.-|+.++....++...-..+...|-.++..|+-
T Consensus 27 l~~qv~rL~qEN~~Lr~el~~tq~~lq~se~~~~~Lpee~~~Lqf 71 (181)
T PF09311_consen 27 LRAQVRRLCQENDWLRGELANTQQKLQESEQEVAQLPEEVKHLQF 71 (181)
T ss_dssp HHT------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCcchHHHHHH
Confidence 445677777888888888777776665556666666666666653
No 418
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=31.25 E-value=4.2e+02 Score=27.05 Aligned_cols=54 Identities=13% Similarity=0.267 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHhH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 282 QAHLTELETQVSQLRVENS--------SLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 282 ka~leeLE~qV~~L~~EN~--------~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
++.+++.|.++..++.+|. .+..++..+.+++..+..+-..+++.+..|++++.
T Consensus 174 ~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~ 235 (498)
T TIGR03007 174 EKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALKRQLG 235 (498)
T ss_pred HHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455666666666665543 25567777777777777777777777777777665
No 419
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=30.98 E-value=5e+02 Score=30.51 Aligned_cols=28 Identities=21% Similarity=0.377 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 271 RESARRSRRRKQAHLTELETQVSQLRVE 298 (341)
Q Consensus 271 RESARRSR~RKka~leeLE~qV~~L~~E 298 (341)
.+..+..+.+++..+..|+.++..++.+
T Consensus 845 ~e~l~~e~e~~~~eI~~Lq~ki~el~~~ 872 (1311)
T TIGR00606 845 IELNRKLIQDQQEQIQHLKSKTNELKSE 872 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555554444444433
No 420
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=30.82 E-value=1.6e+02 Score=33.80 Aligned_cols=54 Identities=19% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHh
Q 019400 281 KQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDN---RVLKADVETLRAKV 334 (341)
Q Consensus 281 Kka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN---~~Lkaqle~LRakV 334 (341)
|...+.+++.+..++..+|+++.+.+..+.++|.....+| ..++.+.+.++++|
T Consensus 174 k~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~v 230 (1265)
T KOG0976|consen 174 KNEELNEFNMEFQTKLAEANREKKALEEKLEKFKEDLIEKDQKSLELHKDQENTQKV 230 (1265)
T ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
No 421
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=30.71 E-value=90 Score=25.07 Aligned_cols=26 Identities=31% Similarity=0.502 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019400 284 HLTELETQVSQLRVENSSLLKRLTDI 309 (341)
Q Consensus 284 ~leeLE~qV~~L~~EN~~L~~rl~~L 309 (341)
+++.++.+..+|+.||..|.-+...+
T Consensus 43 ~l~~l~~~~~~l~~e~~~L~lE~~~l 68 (97)
T PF04999_consen 43 ELQQLEKEIDQLQEENERLRLEIATL 68 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 37777788888888888877776665
No 422
>PF15556 Zwint: ZW10 interactor
Probab=30.52 E-value=5.2e+02 Score=25.22 Aligned_cols=47 Identities=17% Similarity=0.176 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 289 ETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 289 E~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
|..+..|..-..+++.+.....+++..+..|=..|+.+...-|.+|.
T Consensus 133 eK~LQ~Lae~sAEvrerq~~~qqeLe~l~qeL~~lkqQa~qeqdKLQ 179 (252)
T PF15556_consen 133 EKHLQHLAEVSAEVRERQTGTQQELERLYQELGTLKQQAGQEQDKLQ 179 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555555555666666666666666665555543
No 423
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=30.45 E-value=79 Score=27.80 Aligned_cols=22 Identities=14% Similarity=0.431 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019400 307 TDISQKYNEAAVDNRVLKADVE 328 (341)
Q Consensus 307 ~~L~qk~~~l~~EN~~Lkaqle 328 (341)
++|..++..|..||..||.+|.
T Consensus 6 EeLaaeL~kLqmENk~LKkkl~ 27 (118)
T PF05812_consen 6 EELAAELQKLQMENKALKKKLR 27 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566788888887764
No 424
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=30.25 E-value=3.5e+02 Score=24.92 Aligned_cols=15 Identities=27% Similarity=0.370 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 019400 314 NEAAVDNRVLKADVE 328 (341)
Q Consensus 314 ~~l~~EN~~Lkaqle 328 (341)
..+..++..|+.+++
T Consensus 113 ~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 113 EELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444443
No 425
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=30.13 E-value=5.1e+02 Score=30.98 Aligned_cols=65 Identities=17% Similarity=0.245 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019400 272 ESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMH 336 (341)
Q Consensus 272 ESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~m 336 (341)
++.+.+-.+++..+.+|+..+..+..|-.+..+.+..+.+....+...=..|++++++++..+.+
T Consensus 531 ~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~ 595 (1293)
T KOG0996|consen 531 LASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSS 595 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566677777777777777777777777777777777777776667777777777765544
No 426
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=30.10 E-value=2.6e+02 Score=23.83 Aligned_cols=31 Identities=16% Similarity=0.388 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 301 SLLKRLTDISQKYNEAAVDNRVLKADVETLR 331 (341)
Q Consensus 301 ~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LR 331 (341)
.+..++....+++..+..+|..|++++..|+
T Consensus 54 ~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~ 84 (117)
T COG2919 54 QLQRQIAAQQAELEKLSARNTALEAEIKDLK 84 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444444455555555555555555554
No 427
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=29.94 E-value=6.4e+02 Score=27.43 Aligned_cols=32 Identities=6% Similarity=0.311 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 304 KRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 304 ~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
.++..+++++..+..+=...++++..|+..+.
T Consensus 237 ~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~ 268 (754)
T TIGR01005 237 QQLAELNTELSRARANRAAAEGTADSVKKALQ 268 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666666655555555555555555554
No 428
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=29.93 E-value=1.8e+02 Score=22.60 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Q 019400 285 LTELETQVSQLRVENSSLLKRLTDI 309 (341)
Q Consensus 285 leeLE~qV~~L~~EN~~L~~rl~~L 309 (341)
+++|+..+..|+.|...+...+..-
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K 47 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKK 47 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777776665443
No 429
>PF08331 DUF1730: Domain of unknown function (DUF1730); InterPro: IPR013542 This domain of unknown function occurs in iron-sulphur cluster-binding proteins together with the 4Fe-4S binding domain (IPR001450 from INTERPRO).
Probab=29.91 E-value=42 Score=26.40 Aligned_cols=19 Identities=37% Similarity=0.445 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHhHHHHHH
Q 019400 142 LEDYQAVLKSKLNLACAAV 160 (341)
Q Consensus 142 p~~y~a~Lk~kL~~~caAv 160 (341)
-.+||.+||.||+.-|.-+
T Consensus 45 G~DYH~vlk~~L~~l~~~i 63 (78)
T PF08331_consen 45 GRDYHKVLKKKLEQLAEWI 63 (78)
T ss_pred cCChHHHHHHHHHHHHHHH
Confidence 3599999999998877666
No 430
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=29.60 E-value=3.4e+02 Score=23.75 Aligned_cols=51 Identities=10% Similarity=0.061 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 285 leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
++.|-.....|+..-....+.+..|+..+...+.....-...+..|...++
T Consensus 22 ~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~ 72 (160)
T PF13094_consen 22 YEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAK 72 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 431
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=29.54 E-value=5.1e+02 Score=24.83 Aligned_cols=23 Identities=22% Similarity=0.458 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHH
Q 019400 285 LTELETQVSQLRVENSSLLKRLT 307 (341)
Q Consensus 285 leeLE~qV~~L~~EN~~L~~rl~ 307 (341)
+..+..++..|+.++..+..++.
T Consensus 137 ~~~~~~~i~~l~~~~~~~~~~~~ 159 (301)
T PF14362_consen 137 IARLDAEIAALQAEIDQLEKEID 159 (301)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443333
No 432
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=29.48 E-value=2.8e+02 Score=30.26 Aligned_cols=22 Identities=36% Similarity=0.438 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHH
Q 019400 285 LTELETQVSQLRVENSSLLKRL 306 (341)
Q Consensus 285 leeLE~qV~~L~~EN~~L~~rl 306 (341)
+..|+.++..|+.++..|..+|
T Consensus 512 ~~~Le~e~~~L~~~~~~Le~~l 533 (722)
T PF05557_consen 512 IEELERENERLRQELEELESEL 533 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444
No 433
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=29.42 E-value=3.7e+02 Score=24.59 Aligned_cols=33 Identities=18% Similarity=0.155 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 019400 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEA 316 (341)
Q Consensus 284 ~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l 316 (341)
|.+.|+.++..++.+...|...+.....+....
T Consensus 80 ~r~~l~~~~~~~e~~~a~l~~~l~~~~~~ia~~ 112 (158)
T PF09486_consen 80 YRDVLEERVRAAEAELAALRQALRAAEDEIAAT 112 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444443333333
No 434
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=29.21 E-value=2.9e+02 Score=25.76 Aligned_cols=35 Identities=14% Similarity=0.199 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019400 275 RRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDI 309 (341)
Q Consensus 275 RRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L 309 (341)
+.-=++|++++.+.+.+...++.+..+|..++...
T Consensus 138 ~~G~~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~~ 172 (176)
T PF12999_consen 138 KEGLKIRQELIEEAKKKREELEKKLEELEKEIQAA 172 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455666666666655555555555555444
No 435
>PF08248 Tryp_FSAP: Tryptophyllin-3 skin active peptide; InterPro: IPR013266 PdT-3 or Tryptophyllin-3 peptide is a subfamily of the family Tryptophyllin and of the superfamily FSAP (Frog Skin Active Peptide). Originally identified in skin extracts of Neotropical leaf frogs, Phyllomedusa sp. This subfamily has an average length of 13 amino acids. The pharmacological activity of the tryptophyllins remains to be established [] but it seems that these peptides possess an action on liver protein synthesis and body weight []. It is thought to possesses insulin-releasing activity [].
Probab=29.16 E-value=26 Score=19.47 Aligned_cols=7 Identities=43% Similarity=1.393 Sum_probs=5.6
Q ss_pred ccCcCCC
Q 019400 48 EQFWSNP 54 (341)
Q Consensus 48 ~~fW~~p 54 (341)
.|||.+|
T Consensus 2 kpfw~pp 8 (12)
T PF08248_consen 2 KPFWPPP 8 (12)
T ss_pred CccCCCC
Confidence 4899887
No 436
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=28.98 E-value=6.4e+02 Score=28.49 Aligned_cols=34 Identities=24% Similarity=0.317 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019400 276 RSRRRKQAHLTELETQVSQLRVENSSLLKRLTDI 309 (341)
Q Consensus 276 RSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L 309 (341)
++|.+-...+..|.....+|+.+-..-...+..+
T Consensus 507 ~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l 540 (739)
T PF07111_consen 507 RAREQGEAERQQLSEVAQQLEQELQEKQESLAEL 540 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555556555555555444433333333
No 437
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=28.95 E-value=3.9e+02 Score=26.45 Aligned_cols=26 Identities=35% Similarity=0.431 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019400 284 HLTELETQVSQLRVENSSLLKRLTDI 309 (341)
Q Consensus 284 ~leeLE~qV~~L~~EN~~L~~rl~~L 309 (341)
.+.+|+.+++.++.+...+..++..+
T Consensus 35 ~~~~l~~~~~~~~~~~~~~~~~~~~~ 60 (378)
T TIGR01554 35 EKEELETDVEKLKEEIKLLEDAIADL 60 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666655555544443
No 438
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=28.91 E-value=4.2e+02 Score=23.65 Aligned_cols=54 Identities=15% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 282 QAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 282 ka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
+..++.....+...+..+..+..+|..+.+....-...-..|+.++....+.+.
T Consensus 25 ~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~ 78 (135)
T TIGR03495 25 RADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLA 78 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 439
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=28.82 E-value=2.4e+02 Score=22.68 Aligned_cols=21 Identities=14% Similarity=0.234 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 019400 314 NEAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 314 ~~l~~EN~~Lkaqle~LRakV 334 (341)
..++.+++..++-+..++.+|
T Consensus 62 ~~Le~~i~~k~~~L~~~~~~~ 82 (83)
T PF07544_consen 62 EELEEQIRKKREVLQKFKERV 82 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 333444444444445554443
No 440
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=28.73 E-value=4.8e+02 Score=26.01 Aligned_cols=49 Identities=24% Similarity=0.373 Sum_probs=29.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 019400 267 MLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNE 315 (341)
Q Consensus 267 klsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~ 315 (341)
++.-|+-|.+-|..=+..+++|.++-.+-.-.-.-|+.++.-|-++|.+
T Consensus 42 LQas~dEa~~L~~~L~~kl~eLqkk~~Ea~lAVtPLKak~AslV~kc~e 90 (277)
T PF15030_consen 42 LQASRDEATRLQDELQGKLEELQKKQHEANLAVTPLKAKLASLVQKCRE 90 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhccchHHHHHHHHHHHHHH
Confidence 5555556666666666666666655444444444566777666666554
No 441
>smart00340 HALZ homeobox associated leucin zipper.
Probab=28.61 E-value=1.2e+02 Score=22.52 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Q 019400 286 TELETQVSQLRVENSSLLKRLTDIS 310 (341)
Q Consensus 286 eeLE~qV~~L~~EN~~L~~rl~~L~ 310 (341)
+-|..=.+.|..||..|.+++.+|+
T Consensus 8 e~LKrcce~LteeNrRL~ke~~eLr 32 (44)
T smart00340 8 ELLKRCCESLTEENRRLQKEVQELR 32 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667889999999999988874
No 442
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=28.46 E-value=6.8e+02 Score=29.82 Aligned_cols=63 Identities=11% Similarity=0.106 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Q 019400 272 ESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAV----DNRVLKADVETLRAKV 334 (341)
Q Consensus 272 ESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~----EN~~Lkaqle~LRakV 334 (341)
..|++....-++++++++..+...+.+-..+..++..+..++..+.. .-..|.++++.++++|
T Consensus 871 ~~A~~~~~~a~~~le~ae~~l~~~~~e~~~~~~e~~~a~~~l~~l~e~l~~~~eel~a~L~e~r~rL 937 (1353)
T TIGR02680 871 RHAATRAAEQRARAARAESDAREAAEDAAEARAEAEEASLRLRTLEESVGAMVDEIRARLAETRAAL 937 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555666666666666666555555555555444333332 1344555555555444
No 443
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=28.46 E-value=3.5e+02 Score=29.39 Aligned_cols=76 Identities=17% Similarity=0.240 Sum_probs=51.3
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019400 258 PVDAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMH 336 (341)
Q Consensus 258 ~~e~KR~RRklsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~m 336 (341)
+.+--|.+|+-. --..+.+|-.+.+.+.+..+..-+.+-..|--++...+.+...+..+|+.++.+.+.|..+++.
T Consensus 27 e~ef~rl~k~fe---d~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i~~ 102 (604)
T KOG3564|consen 27 EDEFIRLRKDFE---DFEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQIQL 102 (604)
T ss_pred HHHHHHHHHHHH---HHHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 445555555443 2334444555556666666777777777777788888888888888888888888888777653
No 444
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=28.45 E-value=4.1e+02 Score=23.34 Aligned_cols=53 Identities=19% Similarity=0.276 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 283 AHLTELETQVSQLRVENSSLLKRL-TDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 283 a~leeLE~qV~~L~~EN~~L~~rl-~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
+.+..+..++..|+..+..|..+. ..++.....|..==.-|-..+..++.||+
T Consensus 55 ~~~~~~~~~~~~l~~~~~kl~~E~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk 108 (136)
T PF04871_consen 55 AELEELASEVKELEAEKEKLKEEARKEAQSELDDLLVLLGDLEEKRKKYKERLK 108 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHH
Confidence 335555666666666666655433 34444444444444445555555555554
No 445
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=28.44 E-value=3e+02 Score=21.74 Aligned_cols=20 Identities=35% Similarity=0.459 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHhHHHHHHHH
Q 019400 288 LETQVSQLRVENSSLLKRLT 307 (341)
Q Consensus 288 LE~qV~~L~~EN~~L~~rl~ 307 (341)
|+.+.+.++.+-..|..++.
T Consensus 67 L~~~~~~~~~~i~~l~~~~~ 86 (106)
T PF01920_consen 67 LEERIEKLEKEIKKLEKQLK 86 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 446
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=28.36 E-value=2.5e+02 Score=30.65 Aligned_cols=31 Identities=26% Similarity=0.500 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 019400 284 HLTELETQVSQLRVENSSLLKRLTDISQKYN 314 (341)
Q Consensus 284 ~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~ 314 (341)
.+..|..++..|+.++..|..++..|..++.
T Consensus 504 ~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~ 534 (722)
T PF05557_consen 504 ELNELQKEIEELERENERLRQELEELESELE 534 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666666666664443
No 447
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=28.29 E-value=2.6e+02 Score=25.78 Aligned_cols=51 Identities=18% Similarity=0.194 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 019400 258 PVDAKRVRRMLSNRESARRSRRR-----KQAHLTELETQVSQLRVENSSLLKRLTD 308 (341)
Q Consensus 258 ~~e~KR~RRklsNRESARRSR~R-----Kka~leeLE~qV~~L~~EN~~L~~rl~~ 308 (341)
+.+.-|.++-++.+.-++++|.- =....++||.-+.-.+.|-..+++++..
T Consensus 40 EeeIErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~ 95 (159)
T PF04949_consen 40 EEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDS 95 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Confidence 34455566677788888888742 2223345555444445555555444443
No 448
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=28.29 E-value=4.1e+02 Score=25.26 Aligned_cols=6 Identities=17% Similarity=0.451 Sum_probs=2.2
Q ss_pred HHHHHH
Q 019400 288 LETQVS 293 (341)
Q Consensus 288 LE~qV~ 293 (341)
++.+++
T Consensus 113 ~~~~~~ 118 (334)
T TIGR00998 113 LKIKLE 118 (334)
T ss_pred HHHHHH
Confidence 333333
No 449
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=27.87 E-value=6e+02 Score=28.20 Aligned_cols=50 Identities=20% Similarity=0.419 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019400 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 285 leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV 334 (341)
+..|..++..|+.+...|..++..+.+.+.....++..+..++..+...|
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l 292 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENL 292 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666665555443
No 450
>PRK14143 heat shock protein GrpE; Provisional
Probab=27.85 E-value=2.3e+02 Score=27.41 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH
Q 019400 283 AHLTELETQVSQLRVENSSLLKRLTD 308 (341)
Q Consensus 283 a~leeLE~qV~~L~~EN~~L~~rl~~ 308 (341)
+.+.+|..++-.+..+...+++|...
T Consensus 81 ~e~~elkd~~lR~~AdfeN~RKR~~k 106 (238)
T PRK14143 81 QELEELNSQYMRIAADFDNFRKRTSR 106 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555543
No 451
>PHA00728 hypothetical protein
Probab=27.75 E-value=58 Score=29.19 Aligned_cols=22 Identities=41% Similarity=0.625 Sum_probs=18.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHH
Q 019400 290 TQVSQLRVENSSLLKRLTDISQ 311 (341)
Q Consensus 290 ~qV~~L~~EN~~L~~rl~~L~q 311 (341)
.+|++|+.||.+|++++..|..
T Consensus 5 teveql~keneelkkkla~lea 26 (151)
T PHA00728 5 TEVEQLKKENEELKKKLAELEA 26 (151)
T ss_pred hHHHHHHHhHHHHHHHHHHHHH
Confidence 4688999999999998887743
No 452
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=27.64 E-value=3.5e+02 Score=28.08 Aligned_cols=69 Identities=23% Similarity=0.211 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 258 PVDAKRVRRMLSNRESARRSRRR---------KQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVE 328 (341)
Q Consensus 258 ~~e~KR~RRklsNRESARRSR~R---------Kka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle 328 (341)
+.++|-++-|.+| |+.=-.| =|..|++++.++..-..||..+.+++..+..-+..|...-..||+.|.
T Consensus 123 EveekykkaMvsn---aQLDNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~ 199 (405)
T KOG2010|consen 123 EVEEKYKKAMVSN---AQLDNEKNNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLR 199 (405)
T ss_pred HHHHHHHHHHHHH---HhhcccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667778877 2222121 134567777777777788888888888877777777777777776654
Q ss_pred H
Q 019400 329 T 329 (341)
Q Consensus 329 ~ 329 (341)
.
T Consensus 200 Q 200 (405)
T KOG2010|consen 200 Q 200 (405)
T ss_pred H
Confidence 3
No 453
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=27.55 E-value=3.8e+02 Score=30.04 Aligned_cols=55 Identities=22% Similarity=0.169 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 276 RSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETL 330 (341)
Q Consensus 276 RSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~L 330 (341)
++..-=|.+++..+.++.+++.....+...+..+.++...+..|+..|+-.++.+
T Consensus 566 ~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~ 620 (698)
T KOG0978|consen 566 QSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERL 620 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333334445555555555555555555555555555555555555555444443
No 454
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=27.53 E-value=2.3e+02 Score=28.74 Aligned_cols=52 Identities=19% Similarity=0.311 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019400 286 TELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMHS 337 (341)
Q Consensus 286 eeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ma 337 (341)
..|..+|..++...+.|..++..+.+....+..+...|...+..|..+....
T Consensus 140 ~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsRRn 191 (370)
T PF02994_consen 140 ESLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSRRN 191 (370)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 3566667777666667777777777766666777777778888777766543
No 455
>PRK00226 greA transcription elongation factor GreA; Reviewed
Probab=27.53 E-value=3e+02 Score=24.18 Aligned_cols=27 Identities=15% Similarity=0.402 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCC
Q 019400 313 YNEAAVDNRVLKADVETLRAKVMHSSI 339 (341)
Q Consensus 313 ~~~l~~EN~~Lkaqle~LRakV~ma~~ 339 (341)
|.....+-..|...+..|.+.|..|.+
T Consensus 49 y~~a~~~~~~~~~ri~~l~~~L~~a~i 75 (157)
T PRK00226 49 YHAAKEEQGFIEGRIRELEDKLSNAEV 75 (157)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhCee
Confidence 455555666778888888888887765
No 456
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=27.49 E-value=3.8e+02 Score=24.00 Aligned_cols=14 Identities=50% Similarity=0.695 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 019400 319 DNRVLKADVETLRA 332 (341)
Q Consensus 319 EN~~Lkaqle~LRa 332 (341)
.|..|+++|+.|+.
T Consensus 52 d~eeLk~~i~~lq~ 65 (155)
T PF06810_consen 52 DNEELKKQIEELQA 65 (155)
T ss_pred CHHHHHHHHHHHHH
Confidence 33344444444433
No 457
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=27.30 E-value=1.5e+02 Score=33.44 Aligned_cols=40 Identities=23% Similarity=0.433 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 019400 280 RKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVD 319 (341)
Q Consensus 280 RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~E 319 (341)
||..+-..+..+++.++.+|.....++.+|..++..+..+
T Consensus 114 rK~rre~k~ke~iE~y~~e~pkv~~QFaDLKr~LatvTe~ 153 (913)
T KOG0495|consen 114 RKERREKKLKEEIEKYRKENPKVQQQFADLKRKLATVTED 153 (913)
T ss_pred HHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHhhcCHH
Confidence 3434445566778899999999999999999888887654
No 458
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=27.20 E-value=2.6e+02 Score=28.61 Aligned_cols=11 Identities=27% Similarity=0.386 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 019400 323 LKADVETLRAK 333 (341)
Q Consensus 323 Lkaqle~LRak 333 (341)
+++++..+++.
T Consensus 296 ~~~~l~~~~~~ 306 (457)
T TIGR01000 296 LNQKLLELESK 306 (457)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 459
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=27.20 E-value=1.6e+02 Score=29.29 Aligned_cols=47 Identities=26% Similarity=0.312 Sum_probs=28.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 019400 266 RMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQK 312 (341)
Q Consensus 266 RklsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk 312 (341)
....+-+-++..=..++..+.+++.++..|+.+......+...+..+
T Consensus 225 ~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~ 271 (344)
T PF12777_consen 225 EAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEE 271 (344)
T ss_dssp HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555666777777777777776665555554444433
No 460
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=27.18 E-value=4.4e+02 Score=23.26 Aligned_cols=54 Identities=11% Similarity=0.242 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 282 QAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 282 ka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
.++++.|..++++...-......++..++........+=..+..-+..|..|+.
T Consensus 67 sqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~ 120 (126)
T PF07889_consen 67 SQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKID 120 (126)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777777777777777777777777777777777666677777777766664
No 461
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=27.12 E-value=5e+02 Score=24.25 Aligned_cols=13 Identities=38% Similarity=0.401 Sum_probs=5.5
Q ss_pred HHHHhhccCCCCC
Q 019400 160 VALSRASCARPQD 172 (341)
Q Consensus 160 va~~r~s~~~~~~ 172 (341)
.+..+-.||.|..
T Consensus 14 ~~~~~~~GV~p~~ 26 (176)
T PF12999_consen 14 SASSRIRGVSPSD 26 (176)
T ss_pred hccCCCCCCCHHH
Confidence 3333334555543
No 462
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=26.95 E-value=3.5e+02 Score=22.32 Aligned_cols=47 Identities=13% Similarity=0.222 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVET 329 (341)
Q Consensus 283 a~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~ 329 (341)
+.+++|-..|..|-..-..|...+..+..+.+.+..|+.+-++++..
T Consensus 25 aK~dqlss~vq~LnAkv~qLe~dv~a~~~~~qAAk~eaarAn~rldn 71 (78)
T COG4238 25 AKIDQLSSDVQTLNAKVDQLENDVNAMRSDVQAAKDEAARANQRLDN 71 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 44567777777777777777777777777777777777766666544
No 463
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=26.87 E-value=2.4e+02 Score=30.11 Aligned_cols=47 Identities=17% Similarity=0.223 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Q 019400 285 LTELETQVSQLRVENSSLLKRLTDIS------QKYNEAAVDNRVLKADVETLR 331 (341)
Q Consensus 285 leeLE~qV~~L~~EN~~L~~rl~~L~------qk~~~l~~EN~~Lkaqle~LR 331 (341)
++.||.+++.|+.+-.+|..++..-. .++..+..+=..++.+++.|-
T Consensus 570 ~~~~e~~i~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (635)
T PRK11147 570 LEQLPQLLEDLEAEIEALQAQVADADFFSQPHEQTQKVLADLADAEQELEVAF 622 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888777776664321 134444444445555555443
No 464
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=26.84 E-value=3.4e+02 Score=29.18 Aligned_cols=24 Identities=17% Similarity=0.336 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHH
Q 019400 284 HLTELETQVSQLRVENSSLLKRLT 307 (341)
Q Consensus 284 ~leeLE~qV~~L~~EN~~L~~rl~ 307 (341)
.++.||.+++.|+.+-.+|..++.
T Consensus 564 ~~~~~e~~i~~le~~~~~l~~~l~ 587 (638)
T PRK10636 564 EIARLEKEMEKLNAQLAQAEEKLG 587 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455677777777766666555553
No 465
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=26.71 E-value=1.9e+02 Score=30.78 Aligned_cols=36 Identities=25% Similarity=0.288 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 019400 286 TELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNR 321 (341)
Q Consensus 286 eeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~ 321 (341)
++|+..++.|.+...++..++-.+.+.+..+..+|.
T Consensus 423 eeL~e~~n~l~qrI~eer~~v~~lkql~~~~q~e~t 458 (514)
T KOG4370|consen 423 EELEEKVNHLNQRIAEERERVIELKQLVNLLQEENT 458 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Confidence 445555555555555555555555555554444443
No 466
>PRK11239 hypothetical protein; Provisional
Probab=26.58 E-value=1.1e+02 Score=29.42 Aligned_cols=27 Identities=26% Similarity=0.454 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 019400 286 TELETQVSQLRVENSSLLKRLTDISQK 312 (341)
Q Consensus 286 eeLE~qV~~L~~EN~~L~~rl~~L~qk 312 (341)
+.|+.+|..|+.|...|+.++..+..+
T Consensus 186 ~~Le~rv~~Le~eva~L~~~l~~l~~~ 212 (215)
T PRK11239 186 GDLQARVEALEIEVAELKQRLDSLLAH 212 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557777777777777777777766554
No 467
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=26.56 E-value=3.7e+02 Score=24.28 Aligned_cols=46 Identities=20% Similarity=0.362 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 019400 262 KRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQ 311 (341)
Q Consensus 262 KR~RRklsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~q 311 (341)
....++..-|.-.+.+-++|++||.+|..|...|+ .|..|...+.+
T Consensus 1 q~~~~Le~ek~~~~~rI~~K~~~LqEL~~Q~va~k----nLv~RN~~~~~ 46 (142)
T PF08781_consen 1 QECEELEEEKQRRRERIKKKKEQLQELILQQVAFK----NLVQRNRQLEQ 46 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhh
No 468
>PRK14148 heat shock protein GrpE; Provisional
Probab=26.54 E-value=3e+02 Score=25.85 Aligned_cols=21 Identities=14% Similarity=0.279 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHH
Q 019400 286 TELETQVSQLRVENSSLLKRL 306 (341)
Q Consensus 286 eeLE~qV~~L~~EN~~L~~rl 306 (341)
++|..+...+..+...++++.
T Consensus 57 ~elkd~~lR~~Ae~eN~rKR~ 77 (195)
T PRK14148 57 DQFKDEALRAKAEMENIRKRA 77 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444433
No 469
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=26.52 E-value=5.8e+02 Score=24.43 Aligned_cols=36 Identities=11% Similarity=0.176 Sum_probs=13.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 295 LRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETL 330 (341)
Q Consensus 295 L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~L 330 (341)
|..+...+...+..|.+.......|...|+.++...
T Consensus 80 Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~a 115 (246)
T PF00769_consen 80 LEQELREAEAEIARLEEESERKEEEAEELQEELEEA 115 (246)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334333333333334444444433333
No 470
>PHA03162 hypothetical protein; Provisional
Probab=26.47 E-value=83 Score=28.28 Aligned_cols=21 Identities=19% Similarity=0.474 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019400 307 TDISQKYNEAAVDNRVLKADV 327 (341)
Q Consensus 307 ~~L~qk~~~l~~EN~~Lkaql 327 (341)
++|..++..|..||..||.+|
T Consensus 16 EeLaaeL~kLqmENK~LKkkl 36 (135)
T PHA03162 16 EDLAAEIAKLQLENKALKKKI 36 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555678888888776
No 471
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.27 E-value=2.1e+02 Score=31.65 Aligned_cols=74 Identities=24% Similarity=0.315 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 259 VDAKRVRRMLSNRESARRSRRRKQAHLT----ELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRA 332 (341)
Q Consensus 259 ~e~KR~RRklsNRESARRSR~RKka~le----eLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRa 332 (341)
.|.|..|--+-|-.+-..+-.++...+. .+|.+--.|+.|..+++-+=+.|-+.|..++.||=.|..++..||.
T Consensus 114 neLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~ 191 (772)
T KOG0999|consen 114 NELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQ 191 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhh
Confidence 3566666666665555544444444332 3555666788888888888889999999999999999999999986
No 472
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=26.23 E-value=4e+02 Score=29.78 Aligned_cols=8 Identities=13% Similarity=0.239 Sum_probs=3.9
Q ss_pred ChHHHHHH
Q 019400 141 NLEDYQAV 148 (341)
Q Consensus 141 dp~~y~a~ 148 (341)
||.+-.++
T Consensus 416 D~~eg~al 423 (771)
T TIGR01069 416 DPDEGSAL 423 (771)
T ss_pred CHHHHHHH
Confidence 55554444
No 473
>cd07611 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. The N-BAR domain of amphiphysin forms a curved dimer with a posit
Probab=26.23 E-value=3.2e+02 Score=26.10 Aligned_cols=54 Identities=15% Similarity=0.181 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 277 SRRRKQAHLTELETQVSQLRVE----NSSLLKRLTDISQKYNEAAVDNRVLKADVETL 330 (341)
Q Consensus 277 SR~RKka~leeLE~qV~~L~~E----N~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~L 330 (341)
-|.+|+.-.+.....|+.|+.. -..|.+.-.++..--..-..-|..|+.++..|
T Consensus 112 KR~hKllDYD~~r~~~~kL~~k~~kDe~KL~kAe~el~~Ak~~ye~lN~~Lk~ELP~L 169 (211)
T cd07611 112 KRSRKLVDYDSARHHLEALQTSKRKDEGRIAKAEEEFQKAQKVFEEFNVDLQEELPSL 169 (211)
T ss_pred HHHHHHhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777777642 12344444444444444556689999998877
No 474
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=26.21 E-value=2.8e+02 Score=23.47 Aligned_cols=51 Identities=20% Similarity=0.249 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019400 286 TELETQVSQLRVENSSLLKRL-TDISQKYNEAAVDNRVLKADVETLRAKVMH 336 (341)
Q Consensus 286 eeLE~qV~~L~~EN~~L~~rl-~~L~qk~~~l~~EN~~Lkaqle~LRakV~m 336 (341)
..++..+.++..|-..|...| .+.+........+...+......|..+++-
T Consensus 11 ~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e 62 (100)
T PF06428_consen 11 EEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKE 62 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555544444444 444444555555566666666666665543
No 475
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=26.13 E-value=2e+02 Score=25.36 Aligned_cols=35 Identities=20% Similarity=0.378 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 019400 282 QAHLTELETQVSQLRVENSSLLKRLTDISQKYNEA 316 (341)
Q Consensus 282 ka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l 316 (341)
...++.|+.+|..|+..-..|..++..|+.....+
T Consensus 76 ~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 76 EERKETLELRIKTLEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 476
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=26.12 E-value=3.5e+02 Score=29.30 Aligned_cols=45 Identities=13% Similarity=0.248 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 289 ETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAK 333 (341)
Q Consensus 289 E~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRak 333 (341)
+.+...+..|...|..++....++...+..+...+...+..|...
T Consensus 433 dSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDE 477 (518)
T PF10212_consen 433 DSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDE 477 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555666666555555555555555555554444443
No 477
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=25.98 E-value=6e+02 Score=25.73 Aligned_cols=72 Identities=17% Similarity=0.251 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 019400 262 KRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMHSSIS 340 (341)
Q Consensus 262 KR~RRklsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ma~~~ 340 (341)
|-.-+++--++.--++|.|=...+.-=|.+|.-|+......++++..| ..|...+|.+++..+.-..-+.++
T Consensus 67 REnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~L-------eqelkr~KsELErsQ~~~~~~~~s 138 (307)
T PF10481_consen 67 RENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKL-------EQELKRCKSELERSQQAASSGDVS 138 (307)
T ss_pred hhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhccCCcc
No 478
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=25.84 E-value=4.9e+02 Score=31.16 Aligned_cols=72 Identities=22% Similarity=0.306 Sum_probs=0.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019400 263 RVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLL--------KRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 263 R~RRklsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~--------~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV 334 (341)
...+.+-++.-|.. .+.....+|++.++.++.+-++|. .++....++......+.+.|..++..|+..+
T Consensus 448 ~~~~~~~~~~~~~~---~~~~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eel 524 (1317)
T KOG0612|consen 448 QEKEKLDEKCQAVA---ELEEMDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEEL 524 (1317)
T ss_pred HHhhhHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hcc
Q 019400 335 MHS 337 (341)
Q Consensus 335 ~ma 337 (341)
..+
T Consensus 525 e~~ 527 (1317)
T KOG0612|consen 525 EDA 527 (1317)
T ss_pred HHH
No 479
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=25.67 E-value=88 Score=23.79 Aligned_cols=35 Identities=20% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 019400 278 RRRKQAHLTELETQVSQLRVENSSLLKRLTDISQK 312 (341)
Q Consensus 278 R~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk 312 (341)
|.+...--.....++..|+.||..|..+|..++..
T Consensus 17 rE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r~~ 51 (52)
T PF12808_consen 17 REARSLDRSAARKRLSKLEGENRLLRAELERLRSR 51 (52)
T ss_pred HHhccCCchhHHHHHHHHHHHHHHHHHHHHHHhhc
No 480
>PF14282 FlxA: FlxA-like protein
Probab=25.66 E-value=2.9e+02 Score=23.15 Aligned_cols=46 Identities=24% Similarity=0.448 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHh
Q 019400 289 ETQVSQLRVENSSLLKRLTDISQ----KYNEAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 289 E~qV~~L~~EN~~L~~rl~~L~q----k~~~l~~EN~~Lkaqle~LRakV 334 (341)
..+++.|+.....|..+|..|.. --......=..|.++|..|.+.|
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI 67 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQI 67 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHH
No 481
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=25.65 E-value=2.3e+02 Score=33.10 Aligned_cols=53 Identities=21% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHh
Q 019400 282 QAHLTELETQVSQLRVENSSLLKRLTDISQKYN-------EAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 282 ka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~-------~l~~EN~~Lkaqle~LRakV 334 (341)
++.+..|+.+++.+..+-..+...+....++.. .+..++..|+++++.|++..
T Consensus 148 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (1123)
T PRK11448 148 QQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKA 207 (1123)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 482
>PF06424 PRP1_N: PRP1 splicing factor, N-terminal; InterPro: IPR010491 This domain is specific to the N-terminal part of the prp1 splicing factor, which is involved in mRNA splicing (and possibly also poly(A)+ RNA nuclear export and cell cycle progression). This domain is specific to the N terminus of the RNA splicing factor encoded by prp1 []. It is involved in mRNA splicing and possibly also poly(A)and RNA nuclear export and cell cycle progression.; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005634 nucleus
Probab=25.58 E-value=53 Score=29.25 Aligned_cols=46 Identities=17% Similarity=0.351 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 019400 274 ARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVD 319 (341)
Q Consensus 274 ARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~E 319 (341)
.|-..+||+..-..+..+++..+.+|-.+..++..|...+..+..+
T Consensus 74 ~rmd~Rrk~~re~~~~~e~e~~~~~~pkI~~QFaDLKR~La~VS~e 119 (133)
T PF06424_consen 74 RRMDSRRKKRREAREKEEIEKYRKENPKIQQQFADLKRSLATVSEE 119 (133)
T ss_pred HHHHhcccchhhhhhhhHHHhhhccCchHHHHHHHHHHHHccCCHH
No 483
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=25.58 E-value=6.7e+02 Score=26.70 Aligned_cols=64 Identities=19% Similarity=0.301 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019400 271 RESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 271 RESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV 334 (341)
+-.|++--.+-++.+.-+.++...|+.+-..|..+...|..+.+.+.++-..|..-+..|..++
T Consensus 125 ~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~ 188 (499)
T COG4372 125 LAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQV 188 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 484
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=25.56 E-value=2.4e+02 Score=24.56 Aligned_cols=54 Identities=22% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 282 QAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 282 ka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
+.|-.+...++..++..+.+|..++=.+..+..-+..-+..|..+-+.|+.+|.
T Consensus 64 ~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe~L~~~le 117 (141)
T PF13874_consen 64 QKHDLETSARLEEARRRHQELSHRLLRVLRKQEILRNRGYALSPEEEELRKRLE 117 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
No 485
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=25.54 E-value=4.3e+02 Score=22.63 Aligned_cols=80 Identities=18% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 019400 261 AKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMHSSIS 340 (341)
Q Consensus 261 ~KR~RRklsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ma~~~ 340 (341)
.....+....-.+++.-=..-.....+.+.+.+.=-..+......|..++.++..+..+-..|+.++...+..|...+.+
T Consensus 16 ~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~s 95 (132)
T PF07926_consen 16 KEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEAS 95 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 486
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=25.32 E-value=6.3e+02 Score=29.88 Aligned_cols=73 Identities=15% Similarity=0.276 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 261 AKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAK 333 (341)
Q Consensus 261 ~KR~RRklsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRak 333 (341)
.+-.+++.++=.+-.+.+...+..+++|+.+....-.+..+|...+.+..-+...+.++|..|+.+..+|..+
T Consensus 396 r~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~ 468 (1200)
T KOG0964|consen 396 RSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDK 468 (1200)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHH
No 487
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=25.11 E-value=4.9e+02 Score=23.13 Aligned_cols=79 Identities=15% Similarity=0.314 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHH
Q 019400 262 KRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQK------------YNEAAVDNRVLKADVET 329 (341)
Q Consensus 262 KR~RRklsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk------------~~~l~~EN~~Lkaqle~ 329 (341)
.+.--+...-.-.+..=..++..+..++.++..++.+...+...+..+.++ |.....+-..|+..+..
T Consensus 84 eKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~ 163 (177)
T PF13870_consen 84 EKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRKEIKE 163 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhccCCC
Q 019400 330 LRAKVMHSSIS 340 (341)
Q Consensus 330 LRakV~ma~~~ 340 (341)
|+.++..++..
T Consensus 164 l~rk~~~l~~~ 174 (177)
T PF13870_consen 164 LERKVEILEMR 174 (177)
T ss_pred HHHHHHHHHHh
No 488
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=25.10 E-value=2.5e+02 Score=28.73 Aligned_cols=54 Identities=24% Similarity=0.388 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHhhccC
Q 019400 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAA---------------------VDNRVLKADVETLRAKVMHSS 338 (341)
Q Consensus 285 leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~---------------------~EN~~Lkaqle~LRakV~ma~ 338 (341)
+-+.+.|+..|..|-..|..+|....--...+. .|-+-|..+++.||.||..|+
T Consensus 61 vrdYqrq~~elneEkrtLeRELARaKV~aNRVA~vvANEWKD~nDkvMPVKqWLEERR~lQgEmQ~LrDKLAiaE 135 (351)
T PF07058_consen 61 VRDYQRQVQELNEEKRTLERELARAKVSANRVATVVANEWKDENDKVMPVKQWLEERRFLQGEMQQLRDKLAIAE 135 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHH
No 489
>PHA02414 hypothetical protein
Probab=25.04 E-value=3.2e+02 Score=23.67 Aligned_cols=47 Identities=28% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 286 TELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRA 332 (341)
Q Consensus 286 eeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRa 332 (341)
.+|+..|..|+.---.|-+.++--.+++..+.-+=..|...+.+|+.
T Consensus 32 ~eL~~av~ELRdivvslDKd~Av~sEKqshi~yQi~~Lee~i~aL~~ 78 (111)
T PHA02414 32 KELEVAVAELRDIVVSLDKDVAVNSEKQSHIYYQIERLEEKISALAE 78 (111)
T ss_pred HHHHHHHHHHHHHHHHhhhHhhhhHHHhhHHHHHHHHHHHHHHHHHh
No 490
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=25.01 E-value=5e+02 Score=25.26 Aligned_cols=54 Identities=20% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 276 RSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRA 332 (341)
Q Consensus 276 RSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRa 332 (341)
+.|..||..++.|...+..-+.+-..|..++..++..+ ++-|..+++++.....
T Consensus 153 K~RdqkQ~d~E~l~E~l~~rre~~~kLe~~ie~~~~~v---e~f~~~~~~E~~~Fe~ 206 (240)
T cd07667 153 KKRDQVQAEYEAKLEAVALRKEERPKVPTDVEKCQDRV---ECFNADLKADMERWQN 206 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
No 491
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=25.00 E-value=2.1e+02 Score=25.91 Aligned_cols=48 Identities=13% Similarity=0.025 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhccCC
Q 019400 292 VSQLRVENSSLLKRLTDISQK--YNEAAVDNRVLKADVETLRAKVMHSSI 339 (341)
Q Consensus 292 V~~L~~EN~~L~~rl~~L~qk--~~~l~~EN~~Lkaqle~LRakV~ma~~ 339 (341)
.+.|+.|-..|..++...+.+ ..+...+-+.+..+|..|..+|+-|++
T Consensus 36 ~~~L~~El~~L~~~i~~Ar~~GDlsEak~~~~~~e~rI~~L~~~L~~A~I 85 (160)
T PRK06342 36 LKALEDQLAQARAAYEAAQAIEDVNERRRQMARPLRDLRYLAARRRTAQL 85 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHHHHccCEE
No 492
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=24.69 E-value=2.9e+02 Score=24.35 Aligned_cols=42 Identities=19% Similarity=0.308 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 019400 278 RRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVD 319 (341)
Q Consensus 278 R~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~E 319 (341)
+..|..-+++|+.+++.|+.+...|.++-..+.+++..+..+
T Consensus 65 k~~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~ 106 (119)
T COG1382 65 KVSKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSE 106 (119)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 493
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=24.43 E-value=3.9e+02 Score=21.69 Aligned_cols=60 Identities=13% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 276 RSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 276 RSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
++-..-.+-+..|+..-..|..-|.....++..+...|..=..-=..+|.+++....||.
T Consensus 15 ~~l~~Q~~~l~~ln~tn~~L~~~n~~s~~rl~~~~~~f~~~~~~l~~mK~DLd~i~krir 74 (88)
T PF10241_consen 15 EILALQAQTLGRLNKTNEELLNLNDLSQQRLAEARERFARHTKLLKEMKKDLDYIFKRIR 74 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 494
>PHA03155 hypothetical protein; Provisional
Probab=24.40 E-value=98 Score=27.16 Aligned_cols=22 Identities=14% Similarity=0.484 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019400 306 LTDISQKYNEAAVDNRVLKADV 327 (341)
Q Consensus 306 l~~L~qk~~~l~~EN~~Lkaql 327 (341)
+++|..++..|..||..||.++
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl 31 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKL 31 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 495
>PHA03065 Hypothetical protein; Provisional
Probab=24.33 E-value=4e+02 Score=28.24 Aligned_cols=80 Identities=20% Similarity=0.326 Sum_probs=0.0
Q ss_pred cCCChhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Q 019400 254 ENMDPVDAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAA-----VDNRVLKADVE 328 (341)
Q Consensus 254 ~~~d~~e~KR~RRklsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~-----~EN~~Lkaqle 328 (341)
|..+.++.=|.|| |++-+..-.||++.++.|+..++.|-.+-.-..+.-++++-+.+.+. +++..||.-++
T Consensus 76 G~I~IK~~lReKR----r~a~~~~~kRK~~ei~~l~~~i~~ld~~d~~yEEikt~~~lrI~Kl~F~~fLa~~~nlk~~l~ 151 (438)
T PHA03065 76 GSIPIKQSLREKR----RKASKNTIKRKREEIEKLEDDIKNLDVDDEMYEEIKTDLELKIDKLSFQLFLANSNNLKRLLE 151 (438)
T ss_pred CccchhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHcchhhHHHHHH
Q ss_pred HHHHHhhcc
Q 019400 329 TLRAKVMHS 337 (341)
Q Consensus 329 ~LRakV~ma 337 (341)
..=++|+-+
T Consensus 152 ~~L~~~~~~ 160 (438)
T PHA03065 152 SALARLGEN 160 (438)
T ss_pred HHHHhccCC
No 496
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=24.29 E-value=3.9e+02 Score=28.75 Aligned_cols=57 Identities=21% Similarity=0.334 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhccC
Q 019400 282 QAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAV-DNRVLKADVETLRAKVMHSS 338 (341)
Q Consensus 282 ka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~-EN~~Lkaqle~LRakV~ma~ 338 (341)
++.+.+|+++.++++.+...+.+++..+..++..+.. -...|..+........+.+.
T Consensus 214 ~~~l~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 271 (646)
T PRK05771 214 SELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELERAEALSKFLK 271 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
No 497
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=24.14 E-value=74 Score=23.67 Aligned_cols=22 Identities=45% Similarity=0.662 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019400 275 RRSRRRKQAHLTELETQVSQLR 296 (341)
Q Consensus 275 RRSR~RKka~leeLE~qV~~L~ 296 (341)
|+..+|.+.+++.+|+++++|+
T Consensus 47 r~~~~~~~k~l~~le~e~~~lr 68 (68)
T PF06305_consen 47 RRRIRRLRKELKKLEKELEQLR 68 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
No 498
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=23.90 E-value=8.4e+02 Score=27.42 Aligned_cols=74 Identities=11% Similarity=0.109 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 260 DAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAK 333 (341)
Q Consensus 260 e~KR~RRklsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRak 333 (341)
..|-.+-+.+=++|-+.-=.--+..-.+|..+++++.....+|++.+..-++.+..+..+=.+-.-++++|+++
T Consensus 77 ~~r~~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~ 150 (907)
T KOG2264|consen 77 IGRILREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRET 150 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhh
No 499
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=23.81 E-value=4.4e+02 Score=29.45 Aligned_cols=59 Identities=14% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 275 RRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAK 333 (341)
Q Consensus 275 RRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRak 333 (341)
.|.+..-...-.+++.-++.|+.+-.++..+...+.+....+....+.|+.+.+.|..+
T Consensus 505 ~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~ 563 (782)
T PRK00409 505 EEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEE 563 (782)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=23.78 E-value=1.9e+02 Score=33.23 Aligned_cols=53 Identities=19% Similarity=0.224 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 281 KQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 281 Kka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
+..+|..|| ...|+.|..+|.+++..++.-+.....-+..++.|+.+++.+.+
T Consensus 439 rL~~Lt~le--~~kl~~E~~eL~~~I~~l~~iL~~~~~l~~vi~~EL~eik~kyg 491 (957)
T PRK13979 439 MLYRLTGLE--IVAFEKEYKELEKLIKKLTKILSSEKELLKVIKKELKEVKEKYG 491 (957)
T ss_pred cHHhhhhhH--HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhC
Done!