Query 019400
Match_columns 341
No_of_seqs 194 out of 709
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 15:30:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019400.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019400hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 99.5 1.7E-14 5.8E-19 107.1 6.2 52 262-313 1-52 (55)
2 2wt7_A Proto-oncogene protein 99.3 1.5E-11 5E-16 93.0 9.0 54 261-314 1-54 (63)
3 1t2k_D Cyclic-AMP-dependent tr 99.3 2.6E-11 8.9E-16 90.8 9.1 58 262-326 1-58 (61)
4 2dgc_A Protein (GCN4); basic d 99.2 3.5E-11 1.2E-15 91.4 6.7 46 268-313 15-60 (63)
5 1jnm_A Proto-oncogene C-JUN; B 99.2 5.6E-11 1.9E-15 89.4 6.8 50 262-311 1-50 (62)
6 1ci6_A Transcription factor AT 98.9 2.8E-09 9.7E-14 80.7 8.3 60 262-328 2-61 (63)
7 1gd2_E Transcription factor PA 98.8 1.6E-08 5.5E-13 78.5 8.2 57 264-320 10-66 (70)
8 1hjb_A Ccaat/enhancer binding 98.5 5.4E-07 1.8E-11 72.6 9.6 70 257-333 10-79 (87)
9 1gu4_A CAAT/enhancer binding p 98.5 8.7E-07 3E-11 70.0 9.5 56 257-312 10-65 (78)
10 3a5t_A Transcription factor MA 98.4 1.2E-08 4.1E-13 85.1 -3.2 44 259-302 34-77 (107)
11 2wt7_B Transcription factor MA 98.0 3E-05 1E-09 62.9 9.8 51 259-309 24-74 (90)
12 2oqq_A Transcription factor HY 97.2 0.00092 3.1E-08 47.3 6.0 39 282-327 2-40 (42)
13 1skn_P DNA-binding domain of S 95.8 0.0043 1.5E-07 50.4 2.5 32 259-290 59-90 (92)
14 1deb_A APC protein, adenomatou 95.0 0.11 3.6E-06 38.4 7.4 49 285-333 5-53 (54)
15 2jee_A YIIU; FTSZ, septum, coi 95.0 0.14 5E-06 40.7 8.8 51 285-335 22-72 (81)
16 3hnw_A Uncharacterized protein 93.8 0.34 1.2E-05 41.5 9.3 53 282-334 74-126 (138)
17 2w6a_A ARF GTPase-activating p 93.3 0.33 1.1E-05 36.8 7.3 41 285-325 22-62 (63)
18 2jee_A YIIU; FTSZ, septum, coi 91.7 0.96 3.3E-05 36.0 8.5 48 283-330 6-53 (81)
19 3s9g_A Protein hexim1; cyclin 90.8 1.2 4.2E-05 36.7 8.5 45 287-331 41-92 (104)
20 3hnw_A Uncharacterized protein 90.8 2.1 7.1E-05 36.6 10.4 57 280-336 79-135 (138)
21 2v66_B Nuclear distribution pr 90.5 4.4 0.00015 33.8 11.8 54 284-337 36-89 (111)
22 1go4_E MAD1 (mitotic arrest de 90.0 1.8 6.1E-05 35.6 8.9 24 313-336 70-93 (100)
23 2c9l_Y EB1, zebra, BZLF1 trans 88.9 2.1 7.2E-05 32.1 7.7 38 266-303 5-42 (63)
24 2v71_A Nuclear distribution pr 88.8 5.9 0.0002 35.7 12.2 53 285-337 90-142 (189)
25 3vmx_A Voltage-gated hydrogen 88.6 1.8 6.2E-05 31.4 7.0 37 289-325 3-39 (48)
26 3oja_B Anopheles plasmodium-re 88.6 3.7 0.00013 40.5 11.7 52 284-335 531-582 (597)
27 3cve_A Homer protein homolog 1 88.3 2.5 8.5E-05 32.9 8.1 49 286-334 3-51 (72)
28 2eqb_B RAB guanine nucleotide 87.8 3.3 0.00011 33.9 9.0 11 317-327 82-92 (97)
29 3a2a_A Voltage-gated hydrogen 87.5 1.4 4.9E-05 32.9 6.0 37 289-325 10-46 (58)
30 2dfs_A Myosin-5A; myosin-V, in 87.4 4.4 0.00015 44.6 12.4 53 281-333 989-1045(1080)
31 3m48_A General control protein 87.3 0.65 2.2E-05 31.3 3.7 25 285-309 2-26 (33)
32 3cvf_A Homer-3, homer protein 87.2 1.4 5E-05 34.7 6.3 49 286-334 9-57 (79)
33 1p9i_A Cortexillin I/GCN4 hybr 87.1 0.76 2.6E-05 30.0 3.8 24 312-335 7-30 (31)
34 3a7p_A Autophagy protein 16; c 87.0 11 0.00039 33.0 12.4 67 262-328 68-134 (152)
35 1kd8_B GABH BLL, GCN4 acid bas 86.8 1.1 3.9E-05 30.6 4.7 29 284-312 2-30 (36)
36 2oxj_A Hybrid alpha/beta pepti 86.2 0.95 3.2E-05 30.7 4.0 26 284-309 2-27 (34)
37 1gd2_E Transcription factor PA 85.9 1.4 4.9E-05 33.8 5.5 36 300-335 32-67 (70)
38 2kz5_A Transcription factor NF 85.0 0.074 2.5E-06 43.2 -2.2 25 259-283 63-87 (91)
39 4etp_A Kinesin-like protein KA 84.3 2.1 7E-05 42.1 7.2 55 281-335 8-62 (403)
40 2oxj_A Hybrid alpha/beta pepti 84.2 1.5 5.2E-05 29.7 4.3 31 305-335 2-32 (34)
41 2dgc_A Protein (GCN4); basic d 83.7 1.4 4.8E-05 33.0 4.5 32 304-335 30-61 (63)
42 3m48_A General control protein 83.4 1.4 4.9E-05 29.7 3.9 30 306-335 2-31 (33)
43 3he5_A Synzip1; heterodimeric 82.5 5.2 0.00018 28.4 6.7 44 284-334 4-47 (49)
44 1kd8_A GABH AIV, GCN4 acid bas 82.4 1.6 5.5E-05 29.9 3.9 28 284-311 2-29 (36)
45 3s9g_A Protein hexim1; cyclin 82.1 6 0.00021 32.7 8.0 30 282-311 64-93 (104)
46 3c3f_A Alpha/beta peptide with 81.9 1.9 6.3E-05 29.3 4.0 26 284-309 2-27 (34)
47 3mq7_A Bone marrow stromal ant 81.7 7.1 0.00024 33.1 8.5 51 286-336 60-110 (121)
48 2w83_C C-JUN-amino-terminal ki 81.6 8.1 0.00028 30.5 8.2 47 286-332 5-58 (77)
49 1wt6_A Myotonin-protein kinase 81.1 19 0.00064 28.6 10.2 60 270-332 14-73 (81)
50 3bas_A Myosin heavy chain, str 80.9 18 0.00063 28.3 12.6 54 282-335 34-87 (89)
51 2dfs_A Myosin-5A; myosin-V, in 80.2 12 0.00042 41.1 12.0 31 282-312 1015-1045(1080)
52 3u06_A Protein claret segregat 80.2 2.9 9.8E-05 41.3 6.6 53 283-335 10-62 (412)
53 3c3g_A Alpha/beta peptide with 80.1 2.3 8E-05 28.6 4.0 25 285-309 2-26 (33)
54 3m91_A Proteasome-associated A 80.0 7.7 0.00026 28.2 7.1 40 284-330 10-49 (51)
55 1dh3_A Transcription factor CR 80.0 2.1 7.3E-05 31.2 4.2 32 304-335 22-53 (55)
56 2yy0_A C-MYC-binding protein; 79.9 3.2 0.00011 30.2 5.1 20 290-309 19-38 (53)
57 1uo4_A General control protein 79.1 2.4 8.2E-05 28.7 3.8 26 284-309 2-27 (34)
58 2hy6_A General control protein 79.1 2.4 8.3E-05 28.7 3.8 27 284-310 2-28 (34)
59 3mq7_A Bone marrow stromal ant 79.0 10 0.00035 32.1 8.5 41 289-329 70-110 (121)
60 3a7p_A Autophagy protein 16; c 79.0 7.5 0.00026 34.1 8.1 51 283-333 82-132 (152)
61 3o0z_A RHO-associated protein 78.7 19 0.00066 31.9 10.7 63 261-330 68-130 (168)
62 2wq1_A General control protein 78.7 2.8 9.5E-05 28.2 4.0 26 285-310 2-27 (33)
63 2bni_A General control protein 78.3 2.6 9E-05 28.6 3.8 26 284-309 2-27 (34)
64 1ci6_A Transcription factor AT 78.3 4 0.00014 30.3 5.4 29 306-334 25-53 (63)
65 1jnm_A Proto-oncogene C-JUN; B 77.3 4.7 0.00016 29.6 5.5 31 305-335 23-53 (62)
66 3o0z_A RHO-associated protein 77.2 12 0.00042 33.2 9.0 50 277-328 30-79 (168)
67 3c3f_A Alpha/beta peptide with 77.0 3.7 0.00013 27.8 4.3 31 305-335 2-32 (34)
68 2oa5_A Hypothetical protein BQ 76.9 7.3 0.00025 32.5 7.0 25 283-307 8-32 (110)
69 3efg_A Protein SLYX homolog; x 76.8 8.4 0.00029 29.9 7.0 49 283-331 14-62 (78)
70 3swy_A Cyclic nucleotide-gated 76.7 13 0.00044 26.6 7.3 45 287-334 2-46 (46)
71 3i00_A HIP-I, huntingtin-inter 76.2 15 0.00051 30.7 8.9 49 279-334 36-84 (120)
72 3m9b_A Proteasome-associated A 76.0 3.1 0.0001 39.2 5.1 42 282-323 53-94 (251)
73 2v71_A Nuclear distribution pr 75.9 12 0.00042 33.6 8.8 35 292-326 90-124 (189)
74 1nkp_B MAX protein, MYC proto- 75.7 3.5 0.00012 31.6 4.5 15 320-334 63-77 (83)
75 3s4r_A Vimentin; alpha-helix, 75.6 17 0.00057 29.0 8.6 24 307-330 59-82 (93)
76 1gu4_A CAAT/enhancer binding p 75.6 20 0.00067 28.0 8.8 30 282-311 42-71 (78)
77 3c3g_A Alpha/beta peptide with 75.3 4.4 0.00015 27.3 4.3 30 306-335 2-31 (33)
78 2xdj_A Uncharacterized protein 74.0 16 0.00053 28.8 8.0 46 285-330 22-67 (83)
79 3swf_A CGMP-gated cation chann 74.0 11 0.00036 29.6 6.8 48 286-336 3-50 (74)
80 1kd8_B GABH BLL, GCN4 acid bas 73.8 5 0.00017 27.5 4.3 31 306-336 3-33 (36)
81 3iv1_A Tumor susceptibility ge 73.4 31 0.0011 27.1 9.7 56 279-334 14-69 (78)
82 3efg_A Protein SLYX homolog; x 73.2 9.1 0.00031 29.7 6.4 52 286-337 10-61 (78)
83 3oja_A Leucine-rich immune mol 73.0 38 0.0013 32.6 12.2 29 281-309 433-461 (487)
84 1x8y_A Lamin A/C; structural p 72.9 31 0.0011 26.8 9.8 54 282-335 27-80 (86)
85 2ve7_C Kinetochore protein NUF 72.8 3.2 0.00011 38.4 4.3 75 260-334 118-199 (250)
86 3jsv_C NF-kappa-B essential mo 72.0 34 0.0012 27.8 9.6 67 267-333 7-76 (94)
87 1joc_A EEA1, early endosomal a 71.9 25 0.00084 29.1 9.1 47 283-329 11-57 (125)
88 1hjb_A Ccaat/enhancer binding 71.7 30 0.001 27.5 9.1 56 261-316 18-76 (87)
89 2oqq_A Transcription factor HY 71.5 8.3 0.00028 27.2 5.1 24 283-306 17-40 (42)
90 4h22_A Leucine-rich repeat fli 71.5 23 0.00079 29.2 8.7 75 258-335 6-82 (103)
91 3m9b_A Proteasome-associated A 71.0 4.7 0.00016 37.9 5.0 44 289-332 53-96 (251)
92 3oja_B Anopheles plasmodium-re 70.9 25 0.00085 34.5 10.5 32 304-335 544-575 (597)
93 1t2k_D Cyclic-AMP-dependent tr 70.6 28 0.00094 25.3 9.2 29 306-334 24-52 (61)
94 2j5u_A MREC protein; bacterial 70.5 2.8 9.6E-05 38.6 3.4 41 294-338 23-63 (255)
95 3u1c_A Tropomyosin alpha-1 cha 70.3 40 0.0014 26.9 12.0 56 281-336 42-97 (101)
96 1gk6_A Vimentin; intermediate 69.9 17 0.00059 26.5 6.9 50 286-335 3-52 (59)
97 2zxx_A Geminin; coiled-coil, c 69.9 7.8 0.00027 30.6 5.3 39 297-335 34-72 (79)
98 1fmh_A General control protein 69.6 8.1 0.00028 25.5 4.4 24 286-309 4-27 (33)
99 4emc_A Monopolin complex subun 69.5 7.1 0.00024 35.4 5.6 43 285-334 15-57 (190)
100 3oja_A Leucine-rich immune mol 69.4 38 0.0013 32.7 11.3 50 276-325 435-484 (487)
101 2yy0_A C-MYC-binding protein; 69.2 8.1 0.00028 28.1 4.9 17 300-316 22-38 (53)
102 1i84_S Smooth muscle myosin he 68.5 30 0.001 38.1 11.4 19 314-332 916-934 (1184)
103 1nlw_A MAD protein, MAX dimeri 68.3 9.8 0.00034 29.4 5.6 20 283-302 47-66 (80)
104 2bni_A General control protein 67.8 6.7 0.00023 26.6 3.8 31 305-335 2-32 (34)
105 3m91_A Proteasome-associated A 67.5 23 0.00078 25.7 7.0 34 302-335 14-47 (51)
106 4h22_A Leucine-rich repeat fli 67.1 22 0.00076 29.3 7.7 47 283-329 37-83 (103)
107 2j5u_A MREC protein; bacterial 66.9 2.7 9.1E-05 38.8 2.4 41 284-328 20-60 (255)
108 2xv5_A Lamin-A/C; structural p 66.7 42 0.0014 25.8 8.9 50 286-335 8-57 (74)
109 2wuj_A Septum site-determining 66.2 5 0.00017 29.3 3.3 26 284-309 28-53 (57)
110 2w83_C C-JUN-amino-terminal ki 66.2 12 0.0004 29.6 5.5 42 286-327 33-74 (77)
111 1ic2_A Tropomyosin alpha chain 66.1 42 0.0014 25.6 8.8 51 285-335 22-72 (81)
112 2xdj_A Uncharacterized protein 65.8 22 0.00077 27.9 7.2 44 276-319 20-63 (83)
113 1t6f_A Geminin; coiled-coil, c 65.8 9.8 0.00033 26.1 4.4 28 297-324 7-34 (37)
114 1am9_A Srebp-1A, protein (ster 65.8 9.2 0.00031 29.5 5.0 28 266-293 6-33 (82)
115 2v4h_A NF-kappa-B essential mo 65.6 58 0.002 27.1 11.4 65 270-334 32-106 (110)
116 1uo4_A General control protein 65.5 8.8 0.0003 26.0 4.1 31 305-335 2-32 (34)
117 1a93_B MAX protein, coiled coi 65.4 9.3 0.00032 25.9 4.2 18 313-330 16-33 (34)
118 3u1c_A Tropomyosin alpha-1 cha 65.0 37 0.0013 27.1 8.6 33 286-318 26-58 (101)
119 2hy6_A General control protein 64.9 9.5 0.00032 25.8 4.1 30 306-335 3-32 (34)
120 2r2v_A GCN4 leucine zipper; co 64.9 9 0.00031 26.0 4.0 27 284-310 2-28 (34)
121 1nkp_A C-MYC, MYC proto-oncoge 64.4 33 0.0011 26.8 8.0 30 302-331 57-86 (88)
122 2v66_B Nuclear distribution pr 63.5 63 0.0022 26.8 10.7 57 273-329 46-102 (111)
123 1dip_A Delta-sleep-inducing pe 63.5 5 0.00017 31.6 3.0 24 302-325 20-43 (78)
124 3nmd_A CGMP dependent protein 63.4 22 0.00076 27.6 6.6 27 281-307 38-64 (72)
125 1gk7_A Vimentin; intermediate 63.1 9.9 0.00034 26.1 4.1 30 300-329 9-38 (39)
126 2wvr_A Geminin; DNA replicatio 63.1 28 0.00095 32.0 8.2 38 297-334 115-152 (209)
127 2ocy_A RAB guanine nucleotide 63.1 27 0.00093 30.5 7.9 46 288-333 49-94 (154)
128 3a7o_A Autophagy protein 16; c 62.7 31 0.001 27.0 7.2 49 284-332 26-74 (75)
129 1dip_A Delta-sleep-inducing pe 62.7 7.7 0.00026 30.5 3.9 22 283-304 22-43 (78)
130 1nkp_B MAX protein, MYC proto- 62.4 23 0.00079 26.9 6.6 27 304-330 54-80 (83)
131 3na7_A HP0958; flagellar bioge 61.6 37 0.0013 30.7 9.0 51 284-334 33-83 (256)
132 2wuj_A Septum site-determining 61.6 8 0.00027 28.2 3.7 29 306-334 29-57 (57)
133 3htk_A Structural maintenance 61.5 37 0.0013 24.1 7.2 34 283-316 12-45 (60)
134 1nkp_A C-MYC, MYC proto-oncoge 61.4 17 0.00058 28.5 5.8 18 317-334 65-82 (88)
135 1ic2_A Tropomyosin alpha chain 61.1 27 0.00094 26.7 6.9 33 282-314 26-58 (81)
136 1fmh_A General control protein 60.6 13 0.00045 24.5 4.1 29 307-335 4-32 (33)
137 1uii_A Geminin; human, DNA rep 60.6 54 0.0019 26.1 8.5 33 297-329 46-78 (83)
138 3na7_A HP0958; flagellar bioge 59.2 1E+02 0.0035 27.8 12.7 30 286-315 93-122 (256)
139 3s4r_A Vimentin; alpha-helix, 58.9 19 0.00067 28.5 5.8 47 287-335 20-66 (93)
140 3plt_A Sphingolipid long chain 58.9 45 0.0015 31.0 9.0 68 259-331 90-158 (234)
141 2wq1_A General control protein 58.9 15 0.00052 24.7 4.3 29 307-335 3-31 (33)
142 2wt7_B Transcription factor MA 58.4 70 0.0024 25.6 9.2 54 275-335 29-86 (90)
143 2lw1_A ABC transporter ATP-bin 58.0 41 0.0014 26.0 7.5 49 282-330 21-75 (89)
144 3vkg_A Dynein heavy chain, cyt 57.9 22 0.00074 43.8 8.4 49 290-338 2028-2076(3245)
145 1kd8_A GABH AIV, GCN4 acid bas 57.9 11 0.00038 25.8 3.5 30 307-336 4-33 (36)
146 1fmh_B General control protein 56.9 18 0.00061 23.9 4.3 28 308-335 5-32 (33)
147 3tnu_B Keratin, type II cytosk 56.2 69 0.0023 26.3 9.0 51 284-334 76-126 (129)
148 3e98_A GAF domain of unknown f 56.2 29 0.001 31.8 7.4 45 286-334 68-112 (252)
149 3u59_A Tropomyosin beta chain; 55.5 75 0.0026 25.1 11.9 12 325-336 86-97 (101)
150 1wlq_A Geminin; coiled-coil; 2 55.2 26 0.00088 28.0 5.8 33 297-329 38-70 (83)
151 3mq9_A Bone marrow stromal ant 55.1 80 0.0027 30.2 10.6 34 302-335 434-467 (471)
152 3q8t_A Beclin-1; autophagy, AT 55.0 78 0.0027 25.1 11.0 48 283-330 39-86 (96)
153 1uix_A RHO-associated kinase; 54.4 68 0.0023 24.8 8.0 30 288-317 2-31 (71)
154 1p9i_A Cortexillin I/GCN4 hybr 54.1 18 0.0006 23.6 3.8 27 286-312 2-28 (31)
155 1gk4_A Vimentin; intermediate 53.7 74 0.0025 24.5 10.2 57 279-335 22-78 (84)
156 1wt6_A Myotonin-protein kinase 53.5 48 0.0016 26.3 7.1 41 295-335 29-69 (81)
157 4emc_A Monopolin complex subun 52.5 33 0.0011 31.0 6.8 29 285-313 29-57 (190)
158 1go4_E MAD1 (mitotic arrest de 52.4 24 0.00082 28.9 5.4 26 284-309 13-38 (100)
159 2p4v_A Transcription elongatio 52.0 58 0.002 27.8 8.1 55 285-339 11-74 (158)
160 2fxo_A Myosin heavy chain, car 50.7 1E+02 0.0035 25.3 9.7 48 287-334 66-120 (129)
161 3ra3_A P1C; coiled coil domain 50.4 11 0.00036 24.2 2.3 21 294-314 4-24 (28)
162 3ol1_A Vimentin; structural ge 49.2 75 0.0026 26.0 8.1 10 321-330 93-102 (119)
163 2oto_A M protein; helical coil 48.1 1E+02 0.0035 25.9 9.0 32 285-316 52-83 (155)
164 1nlw_A MAD protein, MAX dimeri 48.0 40 0.0014 26.0 5.9 28 308-335 51-78 (80)
165 4ath_A MITF, microphthalmia-as 48.0 39 0.0013 26.8 5.8 29 283-311 49-77 (83)
166 3tnu_B Keratin, type II cytosk 47.2 1.2E+02 0.004 24.9 9.6 29 285-313 45-73 (129)
167 3tnu_A Keratin, type I cytoske 47.0 1.2E+02 0.0041 24.9 10.1 53 282-334 76-128 (131)
168 3w03_C DNA repair protein XRCC 46.5 29 0.00099 31.1 5.5 30 283-312 152-181 (184)
169 2wt7_A Proto-oncogene protein 46.3 83 0.0028 22.9 10.0 30 305-334 24-53 (63)
170 3bbp_D GRIP and coiled-coil do 46.3 22 0.00074 27.6 4.0 45 287-331 19-63 (71)
171 1grj_A GREA protein; transcrip 46.2 95 0.0033 26.3 8.5 55 285-339 11-74 (158)
172 3ghg_A Fibrinogen alpha chain; 45.9 97 0.0033 32.1 9.8 36 301-336 114-149 (562)
173 2r2v_A GCN4 leucine zipper; co 45.9 33 0.0011 23.2 4.3 30 306-335 3-32 (34)
174 1s1c_X RHO-associated, coiled- 45.8 85 0.0029 24.2 7.3 31 287-317 3-33 (71)
175 2lz1_A Nuclear factor erythroi 45.7 0.44 1.5E-05 38.6 -5.8 23 260-282 64-86 (90)
176 2fic_A Bridging integrator 1; 45.3 84 0.0029 27.6 8.4 11 320-330 199-209 (251)
177 2e7s_A RAB guanine nucleotide 44.6 67 0.0023 27.5 7.2 50 285-334 34-83 (135)
178 3qh9_A Liprin-beta-2; coiled-c 44.5 1.2E+02 0.004 24.1 8.8 27 283-309 26-52 (81)
179 1zme_C Proline utilization tra 44.5 20 0.00067 25.6 3.4 24 283-306 44-67 (70)
180 1a93_B MAX protein, coiled coi 43.8 35 0.0012 23.1 4.2 22 287-308 11-32 (34)
181 3swk_A Vimentin; cytoskeleton, 43.6 80 0.0027 24.6 7.0 9 323-331 68-76 (86)
182 3a2a_A Voltage-gated hydrogen 43.0 68 0.0023 23.9 6.0 24 286-309 21-44 (58)
183 3q0x_A Centriole protein; cent 42.8 91 0.0031 28.7 8.3 57 261-323 162-218 (228)
184 4etp_A Kinesin-like protein KA 42.5 64 0.0022 31.5 7.7 34 284-317 4-37 (403)
185 1jcd_A Major outer membrane li 42.2 96 0.0033 22.5 7.7 31 284-314 5-35 (52)
186 1ik9_A DNA repair protein XRCC 41.7 70 0.0024 28.9 7.3 14 140-153 61-74 (213)
187 2oto_A M protein; helical coil 41.5 1.2E+02 0.004 25.6 8.3 44 288-331 34-77 (155)
188 3q0x_A Centriole protein; cent 41.5 75 0.0026 29.3 7.6 35 301-335 175-209 (228)
189 3nmd_A CGMP dependent protein 40.0 37 0.0013 26.3 4.4 34 299-332 35-68 (72)
190 3ra3_A P1C; coiled coil domain 39.4 33 0.0011 21.9 3.4 21 315-335 4-24 (28)
191 2efr_A General control protein 39.2 1.9E+02 0.0065 25.1 10.3 58 273-330 95-152 (155)
192 3vem_A Helicase protein MOM1; 39.1 1.2E+02 0.0041 25.4 7.7 48 279-336 57-104 (115)
193 1am9_A Srebp-1A, protein (ster 39.0 1.3E+02 0.0043 23.0 9.2 26 282-307 49-74 (82)
194 2ve7_A Kinetochore protein HEC 38.9 42 0.0014 31.8 5.6 48 289-336 184-235 (315)
195 3i00_A HIP-I, huntingtin-inter 38.8 1.7E+02 0.0058 24.3 9.0 22 275-296 39-60 (120)
196 3htk_A Structural maintenance 38.5 1E+02 0.0035 21.7 8.8 50 285-334 7-56 (60)
197 3ghg_A Fibrinogen alpha chain; 37.9 1.1E+02 0.0036 31.9 8.6 42 286-327 113-154 (562)
198 3tnu_A Keratin, type I cytoske 37.3 1.7E+02 0.0059 24.0 9.0 27 286-312 48-74 (131)
199 3vkg_A Dynein heavy chain, cyt 37.1 2.2E+02 0.0076 35.3 12.4 68 266-333 2018-2099(3245)
200 2zvf_A Alanyl-tRNA synthetase; 36.8 23 0.00078 29.7 3.1 28 287-314 29-56 (171)
201 1hlo_A Protein (transcription 36.8 42 0.0014 25.4 4.4 59 275-333 21-79 (80)
202 3oa7_A Head morphogenesis prot 36.7 1.2E+02 0.004 27.8 7.8 40 292-331 32-71 (206)
203 3trt_A Vimentin; cytoskeleton, 36.3 1.3E+02 0.0044 22.2 8.5 36 285-320 37-72 (77)
204 4dzo_A Mitotic spindle assembl 36.1 67 0.0023 26.7 5.8 35 283-317 4-38 (123)
205 2f23_A Anti-cleavage anti-GREA 35.8 1.1E+02 0.0037 25.8 7.3 27 313-339 48-74 (156)
206 3mtu_A Tropomyosin alpha-1 cha 35.0 87 0.003 23.9 5.9 47 283-329 16-62 (75)
207 3he5_B Synzip2; heterodimeric 34.4 1.3E+02 0.0043 21.6 6.2 11 292-302 12-22 (52)
208 4b4t_K 26S protease regulatory 33.3 63 0.0021 31.8 6.0 18 288-305 54-71 (428)
209 1hlo_A Protein (transcription 33.1 36 0.0012 25.8 3.4 21 283-303 57-77 (80)
210 3mov_A Lamin-B1; LMNB1, B-type 33.0 1.8E+02 0.0063 23.0 10.2 53 283-335 37-89 (95)
211 3bas_A Myosin heavy chain, str 32.4 1.7E+02 0.006 22.6 9.0 50 286-335 31-80 (89)
212 1lwu_C Fibrinogen gamma chain; 32.3 1.5E+02 0.0053 28.4 8.4 6 327-332 49-54 (323)
213 1jcd_A Major outer membrane li 31.6 1.5E+02 0.005 21.5 7.6 27 291-317 5-31 (52)
214 2b5u_A Colicin E3; high resolu 31.3 3.8E+02 0.013 27.7 11.3 15 252-266 287-301 (551)
215 1ytz_T Troponin T; muscle, THI 31.1 1.3E+02 0.0046 24.6 6.7 61 277-337 22-89 (107)
216 4ath_A MITF, microphthalmia-as 31.1 1.7E+02 0.0059 23.1 7.1 43 281-334 37-79 (83)
217 3lay_A Zinc resistance-associa 30.8 2.4E+02 0.0083 24.7 8.8 10 152-161 30-39 (175)
218 2akf_A Coronin-1A; coiled coil 30.3 1.1E+02 0.0037 20.2 4.8 25 287-311 3-27 (32)
219 2ve7_C Kinetochore protein NUF 30.2 28 0.00097 32.0 2.8 38 301-338 145-182 (250)
220 3trt_A Vimentin; cytoskeleton, 30.2 1.6E+02 0.0056 21.6 7.3 21 314-334 52-72 (77)
221 2v4h_A NF-kappa-B essential mo 30.1 2.4E+02 0.0082 23.4 10.0 47 283-329 62-108 (110)
222 4ati_A MITF, microphthalmia-as 30.0 20 0.0007 29.5 1.7 23 313-335 93-115 (118)
223 1j1d_B Troponin T, TNT; THIN f 29.6 2.3E+02 0.0079 23.1 9.7 45 293-337 45-89 (106)
224 2zvf_A Alanyl-tRNA synthetase; 29.4 1.4E+02 0.0047 24.8 6.8 28 301-328 29-56 (171)
225 4dzn_A Coiled-coil peptide CC- 28.8 1.3E+02 0.0043 19.8 5.1 19 288-306 7-25 (33)
226 2er8_A Regulatory protein Leu3 28.8 30 0.001 24.9 2.2 21 282-302 48-68 (72)
227 1ik9_A DNA repair protein XRCC 28.6 2.7E+02 0.0093 25.0 9.0 17 289-305 145-161 (213)
228 3m0d_C TNF receptor-associated 28.4 1.8E+02 0.006 21.4 9.2 52 283-334 6-57 (65)
229 2aze_A Transcription factor DP 28.1 1.4E+02 0.0048 26.1 6.7 44 265-312 8-51 (155)
230 3vmx_A Voltage-gated hydrogen 28.1 1.7E+02 0.0058 21.1 6.6 19 288-306 16-34 (48)
231 3qh9_A Liprin-beta-2; coiled-c 28.0 2.2E+02 0.0077 22.5 7.8 41 285-325 35-75 (81)
232 1d7m_A Cortexillin I; coiled-c 27.7 2.5E+02 0.0084 22.9 8.8 47 271-317 13-59 (101)
233 3iox_A AGI/II, PA; alpha helix 27.4 1.7E+02 0.0058 30.0 8.1 29 286-314 37-65 (497)
234 1f5n_A Interferon-induced guan 27.2 5.2E+02 0.018 26.5 12.5 16 318-333 567-582 (592)
235 2xzr_A Immunoglobulin-binding 26.8 2.7E+02 0.0092 23.0 11.7 72 265-336 34-108 (114)
236 3cvf_A Homer-3, homer protein 26.8 2.3E+02 0.0078 22.1 8.4 46 285-330 29-74 (79)
237 3w03_C DNA repair protein XRCC 26.4 1.4E+02 0.0047 26.7 6.5 32 283-314 145-176 (184)
238 3mq9_A Bone marrow stromal ant 26.2 4.3E+02 0.015 25.1 11.6 11 140-150 285-295 (471)
239 4ati_A MITF, microphthalmia-as 25.6 42 0.0014 27.6 2.8 18 318-335 91-108 (118)
240 1fmh_B General control protein 25.5 1.5E+02 0.005 19.5 5.0 29 285-313 3-31 (33)
241 1zxa_A CGMP-dependent protein 25.3 1.3E+02 0.0046 22.8 5.3 30 280-309 22-51 (67)
242 1wle_A Seryl-tRNA synthetase; 25.1 5.4E+02 0.018 25.9 11.7 12 323-334 121-132 (501)
243 3rrk_A V-type ATPase 116 kDa s 24.9 2.9E+02 0.0099 25.4 8.8 28 285-312 228-255 (357)
244 3ljm_A Coil Ser L9C; de novo d 24.6 1.3E+02 0.0043 19.6 4.3 24 286-309 4-27 (31)
245 2avr_X Adhesion A; antiparalle 24.3 3.2E+02 0.011 22.9 8.7 50 285-334 11-60 (119)
246 2oa5_A Hypothetical protein BQ 24.2 41 0.0014 28.0 2.5 22 307-328 11-32 (110)
247 3cl3_D NF-kappa-B essential mo 24.2 35 0.0012 29.2 2.1 19 318-336 55-73 (130)
248 1tu3_F RAB GTPase binding effe 22.7 1.3E+02 0.0045 23.6 4.9 45 288-332 10-54 (79)
249 4b4t_K 26S protease regulatory 22.7 1.5E+02 0.0052 29.1 6.6 46 286-331 45-90 (428)
250 2dq0_A Seryl-tRNA synthetase; 22.4 3.3E+02 0.011 26.9 9.0 53 278-330 40-102 (455)
251 2i1j_A Moesin; FERM, coiled-co 22.3 68 0.0023 32.7 4.2 49 285-333 337-385 (575)
252 3qne_A Seryl-tRNA synthetase, 22.2 6.1E+02 0.021 25.5 11.7 6 286-291 50-55 (485)
253 4gkw_A Spindle assembly abnorm 22.1 3E+02 0.01 23.9 7.5 40 292-331 114-160 (167)
254 1m1j_C Fibrinogen gamma chain; 21.9 1.8E+02 0.0062 28.7 7.0 14 321-334 122-135 (409)
255 2fxo_A Myosin heavy chain, car 21.6 3.3E+02 0.011 22.2 12.6 46 286-331 79-124 (129)
256 3he4_A Synzip6; heterodimeric 21.4 2.4E+02 0.0081 20.4 5.8 29 286-314 20-48 (56)
257 3mud_A DNA repair protein XRCC 21.4 3.3E+02 0.011 24.2 7.9 33 274-306 133-165 (175)
258 1deq_A Fibrinogen (alpha chain 21.3 1.8E+02 0.006 29.0 6.7 38 299-336 115-152 (390)
259 3a5t_A Transcription factor MA 21.1 5.5 0.00019 33.0 -3.4 70 254-334 26-95 (107)
260 3tq7_B Microtubule-associated 21.1 1.8E+02 0.0062 22.8 5.5 45 283-327 8-52 (82)
261 1zxa_A CGMP-dependent protein 21.1 1.3E+02 0.0046 22.8 4.6 30 305-334 26-55 (67)
262 1uii_A Geminin; human, DNA rep 20.8 3.2E+02 0.011 21.7 7.6 22 288-309 51-72 (83)
263 4dyl_A Tyrosine-protein kinase 20.7 5.5E+02 0.019 24.4 11.6 73 264-336 311-391 (406)
264 3tq2_A KE1; parallel three hel 20.5 2E+02 0.0068 19.2 5.3 29 302-330 6-34 (36)
265 2ve7_A Kinetochore protein HEC 20.4 1.3E+02 0.0045 28.3 5.4 18 285-302 187-204 (315)
266 3uux_B Mitochondrial division 20.4 3.4E+02 0.012 25.3 8.0 74 256-329 149-223 (242)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=99.51 E-value=1.7e-14 Score=107.06 Aligned_cols=52 Identities=38% Similarity=0.626 Sum_probs=48.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019400 262 KRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKY 313 (341)
Q Consensus 262 KR~RRklsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~ 313 (341)
||++||++||+||++||.||++|+++||.+|..|+.||..|..++..|.+.|
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5889999999999999999999999999999999999999999998887654
No 2
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=99.28 E-value=1.5e-11 Score=92.99 Aligned_cols=54 Identities=24% Similarity=0.343 Sum_probs=49.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 019400 261 AKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYN 314 (341)
Q Consensus 261 ~KR~RRklsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~ 314 (341)
+||.+|+++||++|++||.||++++.+|+.+|..|+.+|..|..++..|..++.
T Consensus 1 Ekr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~ 54 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKE 54 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999999999999877654443
No 3
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=99.25 E-value=2.6e-11 Score=90.79 Aligned_cols=58 Identities=28% Similarity=0.335 Sum_probs=50.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 262 KRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKAD 326 (341)
Q Consensus 262 KR~RRklsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaq 326 (341)
||++|+++||++|++||.||++|+.+|+.+|..|+.+|..|..++..|. .|+..|+..
T Consensus 1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~-------~e~~~Lk~~ 58 (61)
T 1t2k_D 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLR-------NEVAQLKQL 58 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 6889999999999999999999999999999999999999998887774 445555544
No 4
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=99.18 E-value=3.5e-11 Score=91.39 Aligned_cols=46 Identities=33% Similarity=0.437 Sum_probs=41.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019400 268 LSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKY 313 (341)
Q Consensus 268 lsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~ 313 (341)
.+||+||+|||.||++|+.+|+.+|..|+.+|..|..++..|.+++
T Consensus 15 ~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 15 ARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3499999999999999999999999999999999988888776654
No 5
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=99.16 E-value=5.6e-11 Score=89.35 Aligned_cols=50 Identities=32% Similarity=0.478 Sum_probs=45.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 019400 262 KRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQ 311 (341)
Q Consensus 262 KR~RRklsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~q 311 (341)
|+.||+.+||++|++||.||++++.+|+.+|..|+.+|..|..++..|..
T Consensus 1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~ 50 (62)
T 1jnm_A 1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLRE 50 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999998877743
No 6
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=98.94 E-value=2.8e-09 Score=80.68 Aligned_cols=60 Identities=28% Similarity=0.433 Sum_probs=47.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 262 KRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVE 328 (341)
Q Consensus 262 KR~RRklsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle 328 (341)
|+.+++..||.+|+|+|.||++++.+|+.++..|+.+|..|..++..| ..|+..|+.-+.
T Consensus 2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L-------~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSL-------AKEIQYLKDLIE 61 (63)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHh
Confidence 688999999999999999999999999999999999999999998777 455666665543
No 7
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=98.80 E-value=1.6e-08 Score=78.53 Aligned_cols=57 Identities=33% Similarity=0.375 Sum_probs=43.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 019400 264 VRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDN 320 (341)
Q Consensus 264 ~RRklsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN 320 (341)
.||+..||.++|..|.||.+|+.+||.+|..|+.+|..|..++..|..+...+..||
T Consensus 10 ~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 10 SKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488899999999999999999999999999999988876444444433333333333
No 8
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=98.51 E-value=5.4e-07 Score=72.59 Aligned_cols=70 Identities=23% Similarity=0.253 Sum_probs=53.9
Q ss_pred ChhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 257 DPVDAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAK 333 (341)
Q Consensus 257 d~~e~KR~RRklsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRak 333 (341)
|..+.+-..|..+|.++|+|||.++++.-.+++.+|..|+.||..|..++..|. .|...|+.-+..+...
T Consensus 10 dk~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~-------~E~~~Lr~ll~~~p~~ 79 (87)
T 1hjb_A 10 DKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLS-------RELSTLRNLFKQLPEP 79 (87)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHC----
T ss_pred CcccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHCcHH
Confidence 344455566678999999999999999999999999999999999999988764 4555566555555443
No 9
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=98.46 E-value=8.7e-07 Score=70.04 Aligned_cols=56 Identities=25% Similarity=0.309 Sum_probs=46.9
Q ss_pred ChhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 019400 257 DPVDAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQK 312 (341)
Q Consensus 257 d~~e~KR~RRklsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk 312 (341)
|..+.+-..|..+|.++|+|||.++++...+++.+|..|+.||..|..++..|..+
T Consensus 10 dk~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E 65 (78)
T 1gu4_A 10 DKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRE 65 (78)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445567889999999999999999999999999999999999888776433
No 10
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=98.38 E-value=1.2e-08 Score=85.11 Aligned_cols=44 Identities=34% Similarity=0.432 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 019400 259 VDAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSL 302 (341)
Q Consensus 259 ~e~KR~RRklsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L 302 (341)
.+.|.+||.+|||.+|+.||.||.++.++||.++..|..+...|
T Consensus 34 ~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L 77 (107)
T 3a5t_A 34 IQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKL 77 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTT
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999997666555544444
No 11
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=98.03 E-value=3e-05 Score=62.95 Aligned_cols=51 Identities=25% Similarity=0.359 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019400 259 VDAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDI 309 (341)
Q Consensus 259 ~e~KR~RRklsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L 309 (341)
...|-.||.++||.+|+-||.||.....+||.++..|..+-..|..++..+
T Consensus 24 ~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~ 74 (90)
T 2wt7_B 24 IRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRL 74 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888899999999999999999999999988888777666665544443
No 12
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=97.16 E-value=0.00092 Score=47.33 Aligned_cols=39 Identities=36% Similarity=0.510 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 282 QAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADV 327 (341)
Q Consensus 282 ka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaql 327 (341)
|+|+.+||.++..|+..|++|..+++.| ..||..||+-+
T Consensus 2 KaYl~eLE~r~k~le~~naeLEervstL-------q~EN~mLRqvl 40 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERLSTL-------QNENQMLRHIL 40 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHh
Confidence 5899999999999999999998888777 68898777644
No 13
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=95.78 E-value=0.0043 Score=50.42 Aligned_cols=32 Identities=22% Similarity=0.358 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 019400 259 VDAKRVRRMLSNRESARRSRRRKQAHLTELET 290 (341)
Q Consensus 259 ~e~KR~RRklsNRESARRSR~RKka~leeLE~ 290 (341)
...|..||..+||.+|+++|+||....+.|+.
T Consensus 59 ~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~ 90 (92)
T 1skn_P 59 QLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH 90 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 45788999999999999999999998887763
No 14
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=94.99 E-value=0.11 Score=38.37 Aligned_cols=49 Identities=27% Similarity=0.366 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAK 333 (341)
Q Consensus 285 leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRak 333 (341)
.+.|-.||+.|+.||..|++++..-..++..++.|-.-+|+-+..|..+
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq~~ 53 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQGS 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHccc
Confidence 4678899999999999999999999999999999998888877777654
No 15
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=94.97 E-value=0.14 Score=40.69 Aligned_cols=51 Identities=20% Similarity=0.342 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 285 leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
+.-|+.+|+.|+.+|..|..+...++.....+..+|..|+.+....+.||.
T Consensus 22 I~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~ 72 (81)
T 2jee_A 22 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777777777777777777777788999999999888877764
No 16
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=93.85 E-value=0.34 Score=41.50 Aligned_cols=53 Identities=15% Similarity=0.191 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019400 282 QAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 282 ka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV 334 (341)
+...+.|+.+++.+..|...|..++..++.++..+..++..|+.++..|+.++
T Consensus 74 ~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~ 126 (138)
T 3hnw_A 74 KKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNI 126 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666666666666666666666666666666666655554
No 17
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=93.32 E-value=0.33 Score=36.83 Aligned_cols=41 Identities=29% Similarity=0.357 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKA 325 (341)
Q Consensus 285 leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lka 325 (341)
+..-|.+|.+|..-|..|..++..++.+.+.+..||..||.
T Consensus 22 LaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 22 LATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 55668899999999999999999999999999999988873
No 18
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=91.70 E-value=0.96 Score=35.97 Aligned_cols=48 Identities=19% Similarity=0.199 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETL 330 (341)
Q Consensus 283 a~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~L 330 (341)
.-++.||.+|.++-....-|..++.+|.++...+..+|..++...+.|
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L 53 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREEL 53 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 346788888888888777777777777777777777777744433333
No 19
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=90.83 E-value=1.2 Score=36.75 Aligned_cols=45 Identities=27% Similarity=0.361 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 287 ELETQVSQLRVENSSLLK-------RLTDISQKYNEAAVDNRVLKADVETLR 331 (341)
Q Consensus 287 eLE~qV~~L~~EN~~L~~-------rl~~L~qk~~~l~~EN~~Lkaqle~LR 331 (341)
+||..++.|+.||..|+. ++..|..+...|..||..|+.+-+-.|
T Consensus 41 ~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~~ 92 (104)
T 3s9g_A 41 ELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELHR 92 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 466666666666666555 555555555555555555555554443
No 20
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=90.79 E-value=2.1 Score=36.57 Aligned_cols=57 Identities=7% Similarity=0.114 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019400 280 RKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMH 336 (341)
Q Consensus 280 RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~m 336 (341)
.=.+.+++++.++..|..+...+..++..+.++...+..++..|..++..|.+.++-
T Consensus 79 ~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 79 SLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334667777888888888888888888888888888888888888888888777653
No 21
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=90.54 E-value=4.4 Score=33.77 Aligned_cols=54 Identities=19% Similarity=0.297 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019400 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMHS 337 (341)
Q Consensus 284 ~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ma 337 (341)
.+..|+.++..|+..|..|..++..|.+....++...|..-.=++.+..|++.|
T Consensus 36 ~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~a 89 (111)
T 2v66_B 36 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQA 89 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHH
Confidence 367788889999999999999999998888888888888888888888887754
No 22
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=89.98 E-value=1.8 Score=35.58 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 019400 313 YNEAAVDNRVLKADVETLRAKVMH 336 (341)
Q Consensus 313 ~~~l~~EN~~Lkaqle~LRakV~m 336 (341)
++....+-..|+++++.||.+|+.
T Consensus 70 ~~~~~~~~e~Lq~E~erLr~~v~~ 93 (100)
T 1go4_E 70 RQRLREDHSQLQAECERLRGLLRA 93 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456667889999999998864
No 23
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=88.86 E-value=2.1 Score=32.05 Aligned_cols=38 Identities=26% Similarity=0.301 Sum_probs=28.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 019400 266 RMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLL 303 (341)
Q Consensus 266 RklsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~ 303 (341)
..-+||.++|++|.|=+..++....-...-..||..|+
T Consensus 5 kryknr~asrk~rakfkn~lqh~r~vaaaks~en~rlr 42 (63)
T 2c9l_Y 5 KRYKNRVAARKSRAKFKQLLQHYREVAAAKSSENDRLR 42 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHH
Confidence 44679999999999998888777665555556666554
No 24
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=88.81 E-value=5.9 Score=35.72 Aligned_cols=53 Identities=19% Similarity=0.290 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019400 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMHS 337 (341)
Q Consensus 285 leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ma 337 (341)
+..|+.++..|+..+..|..++..|.+....+....|.+..-++.+..+++.|
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~a 142 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQA 142 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 77888889999999999999999999988888888888888888888887654
No 25
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=88.63 E-value=1.8 Score=31.41 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 289 ETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKA 325 (341)
Q Consensus 289 E~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lka 325 (341)
|.++..|+.-|..|..+++.|+..|..++.|+..|+.
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~ 39 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNK 39 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 6789999999999999999999998888888765554
No 26
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=88.63 E-value=3.7 Score=40.50 Aligned_cols=52 Identities=23% Similarity=0.250 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 284 ~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
.++++..+.+.++.|...|.+++...+++..++..||..+++++..|..++.
T Consensus 531 ~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~ 582 (597)
T 3oja_B 531 EADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKN 582 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444555566666777777777777777777888888888888888877654
No 27
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=88.31 E-value=2.5 Score=32.89 Aligned_cols=49 Identities=12% Similarity=0.353 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019400 286 TELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 286 eeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV 334 (341)
.++..+++.++.+|+.|..++..+++....-..+-..++.++..+-..|
T Consensus 3 ~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~L 51 (72)
T 3cve_A 3 HNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEIL 51 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888888999999999888888888888888887777665543
No 28
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=87.85 E-value=3.3 Score=33.89 Aligned_cols=11 Identities=18% Similarity=0.317 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 019400 317 AVDNRVLKADV 327 (341)
Q Consensus 317 ~~EN~~Lkaql 327 (341)
...|..|+.+|
T Consensus 82 e~kn~~L~~qL 92 (97)
T 2eqb_B 82 EILNKRLTEQL 92 (97)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 29
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=87.53 E-value=1.4 Score=32.88 Aligned_cols=37 Identities=19% Similarity=0.246 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 289 ETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKA 325 (341)
Q Consensus 289 E~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lka 325 (341)
|.++..|+..|-+|..++..|..+|...+.|+..|..
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~ 46 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNK 46 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678889999999999999998888888877765554
No 30
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=87.39 E-value=4.4 Score=44.56 Aligned_cols=53 Identities=21% Similarity=0.307 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 281 KQAHLTELETQVSQLRVENSSLLKRLT----DISQKYNEAAVDNRVLKADVETLRAK 333 (341)
Q Consensus 281 Kka~leeLE~qV~~L~~EN~~L~~rl~----~L~qk~~~l~~EN~~Lkaqle~LRak 333 (341)
.++.+++|+.++..+..|...|..++. +|+++...+..||..|++++..|...
T Consensus 989 L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~ 1045 (1080)
T 2dfs_A 989 LQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRR 1045 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444432 33455556777777777777777643
No 31
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=87.26 E-value=0.65 Score=31.32 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Q 019400 285 LTELETQVSQLRVENSSLLKRLTDI 309 (341)
Q Consensus 285 leeLE~qV~~L~~EN~~L~~rl~~L 309 (341)
|..||.+|+.|-.+|..|..++..|
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RL 26 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARL 26 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4556777776666666665555444
No 32
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=87.21 E-value=1.4 Score=34.73 Aligned_cols=49 Identities=20% Similarity=0.310 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019400 286 TELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 286 eeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV 334 (341)
+++..+++.++.+|+.|..++..+++....-..+-..++.++..+-..|
T Consensus 9 e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~L 57 (79)
T 3cvf_A 9 EETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLL 57 (79)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777888888888888888777777777777777776665443
No 33
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=87.14 E-value=0.76 Score=30.02 Aligned_cols=24 Identities=42% Similarity=0.400 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 312 KYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 312 k~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
-+..+++||.+||+.+++|-++|+
T Consensus 7 llasleaenkqlkakveellakvg 30 (31)
T 1p9i_A 7 LLASLEAENKQLKAKVEELLAKVG 30 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345678899999999999988875
No 34
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=86.96 E-value=11 Score=32.98 Aligned_cols=67 Identities=13% Similarity=0.053 Sum_probs=47.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 262 KRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVE 328 (341)
Q Consensus 262 KR~RRklsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle 328 (341)
+.++.+.+.+.+.++.-......+.+-..-++.|+.|...|.-++..+.++...+..||..|-....
T Consensus 68 ~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM 134 (152)
T 3a7p_A 68 NTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWL 134 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444455556666778899999999999999999999999999977765543
No 35
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=86.79 E-value=1.1 Score=30.65 Aligned_cols=29 Identities=17% Similarity=0.372 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 019400 284 HLTELETQVSQLRVENSSLLKRLTDISQK 312 (341)
Q Consensus 284 ~leeLE~qV~~L~~EN~~L~~rl~~L~qk 312 (341)
+|..||.+|+.|-.+|+.|..++..|+..
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~l 30 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKKK 30 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 46778888888888887777776666443
No 36
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=86.15 E-value=0.95 Score=30.68 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019400 284 HLTELETQVSQLRVENSSLLKRLTDI 309 (341)
Q Consensus 284 ~leeLE~qV~~L~~EN~~L~~rl~~L 309 (341)
+|..||.+|+.|-.+|+.|..++..|
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rL 27 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRL 27 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 35566666666666666555554443
No 37
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=85.91 E-value=1.4 Score=33.85 Aligned_cols=36 Identities=14% Similarity=0.292 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 300 SSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 300 ~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
..|..++..|......+..||..|+.++..|+..+.
T Consensus 32 ~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 32 KALETQVVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666666677888888888888887765
No 38
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=84.97 E-value=0.074 Score=43.18 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHH
Q 019400 259 VDAKRVRRMLSNRESARRSRRRKQA 283 (341)
Q Consensus 259 ~e~KR~RRklsNRESARRSR~RKka 283 (341)
...|..||.-|||.+|+++|+||..
T Consensus 63 ~lIrdiRRRgKNKvAAqnCRKRKld 87 (91)
T 2kz5_A 63 ALVRDIRRRGKNKVAAQNYRKRKLE 87 (91)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCCCCC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3578889999999999999999853
No 39
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=84.29 E-value=2.1 Score=42.05 Aligned_cols=55 Identities=11% Similarity=0.255 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 281 KQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 281 Kka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
.++.+..|+.++..|+.+...+..++..+.+++...+..-+.|.-++++|+-.|+
T Consensus 8 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnIr 62 (403)
T 4etp_A 8 LKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNIR 62 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeE
Confidence 4567888888899999999999999999999999999999999999999986654
No 40
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=84.18 E-value=1.5 Score=29.70 Aligned_cols=31 Identities=26% Similarity=0.315 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 305 RLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 305 rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
+++.|..+...+..+|..|..++..|+.-|+
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLKXLVX 32 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 4556777778888999999999999998775
No 41
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=83.74 E-value=1.4 Score=32.96 Aligned_cols=32 Identities=25% Similarity=0.340 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 304 KRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 304 ~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
.++..|..+...|..+|..|+.++..|+..|.
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666777777778999999999999988764
No 42
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=83.43 E-value=1.4 Score=29.68 Aligned_cols=30 Identities=23% Similarity=0.287 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 306 LTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 306 l~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
+..|..+...+..+|..|..++..|+.-|+
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLKKLVG 31 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 345677778889999999999999998775
No 43
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=82.51 E-value=5.2 Score=28.43 Aligned_cols=44 Identities=27% Similarity=0.395 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019400 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 284 ~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV 334 (341)
.+..||.+|..|+.||..|.++.-.-..-. .-|..++..||.++
T Consensus 4 lvaqlenevaslenenetlkkknlhkkdli-------aylekeianlrkki 47 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKKNLHKKDLI-------AYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccHHHHHhcccHHHHH-------HHHHHHHHHHHHHh
Confidence 356789999999999998877653221111 33555666676665
No 44
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=82.45 E-value=1.6 Score=29.89 Aligned_cols=28 Identities=18% Similarity=0.338 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 019400 284 HLTELETQVSQLRVENSSLLKRLTDISQ 311 (341)
Q Consensus 284 ~leeLE~qV~~L~~EN~~L~~rl~~L~q 311 (341)
+|..||.+|+.|-.+|+.|..++..|+.
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ 29 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEK 29 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4667888888888888888777766643
No 45
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=82.06 E-value=6 Score=32.67 Aligned_cols=30 Identities=37% Similarity=0.411 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 019400 282 QAHLTELETQVSQLRVENSSLLKRLTDISQ 311 (341)
Q Consensus 282 ka~leeLE~qV~~L~~EN~~L~~rl~~L~q 311 (341)
-..+.+|+.+|..|+.||+.|+.+...-.+
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e~~~~~~ 93 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTENELHRQ 93 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 567899999999999999999887766543
No 46
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=81.92 E-value=1.9 Score=29.25 Aligned_cols=26 Identities=8% Similarity=0.063 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019400 284 HLTELETQVSQLRVENSSLLKRLTDI 309 (341)
Q Consensus 284 ~leeLE~qV~~L~~EN~~L~~rl~~L 309 (341)
+|..||.+|+.|-.+|..|..++..|
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RL 27 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARI 27 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 45667777777666666666555544
No 47
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=81.65 E-value=7.1 Score=33.06 Aligned_cols=51 Identities=16% Similarity=0.290 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019400 286 TELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMH 336 (341)
Q Consensus 286 eeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~m 336 (341)
+.|+.+..+-+..-++|..++..|+++++.+..|-..||.+.+.|..++.-
T Consensus 60 ~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~ 110 (121)
T 3mq7_A 60 ASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIAD 110 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhh
Confidence 445555444455566777777777777777788888888888877777654
No 48
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=81.56 E-value=8.1 Score=30.47 Aligned_cols=47 Identities=26% Similarity=0.441 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 286 TELETQVSQLRVENSSLLKRLT-------DISQKYNEAAVDNRVLKADVETLRA 332 (341)
Q Consensus 286 eeLE~qV~~L~~EN~~L~~rl~-------~L~qk~~~l~~EN~~Lkaqle~LRa 332 (341)
.++-.+|+.|-.||.+|+..-. +|..+..++..|+..|+.++..+++
T Consensus 5 ~gmgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~ 58 (77)
T 2w83_C 5 EFMGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQ 58 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4566778888888887765433 4556777777888888888777654
No 49
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=81.11 E-value=19 Score=28.62 Aligned_cols=60 Identities=17% Similarity=0.287 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 270 NRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRA 332 (341)
Q Consensus 270 NRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRa 332 (341)
|-.||=.+=-|-|+ .+..++...+..|..+.++|.+...++..+..|=+.|+.+++.||.
T Consensus 14 eLQSALeaEIqAKQ---~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq~ 73 (81)
T 1wt6_A 14 ELQEALEEEVLTRQ---SLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 66777666666554 3455667788888888888888877777777777777777777653
No 50
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=80.87 E-value=18 Score=28.29 Aligned_cols=54 Identities=24% Similarity=0.263 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 282 QAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 282 ka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
.....+|+.+...|..+...|..++.++...+..+......|..++..|..+|.
T Consensus 34 e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl~ 87 (89)
T 3bas_A 34 ERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLVG 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344467888999999999999888999999999999999999999999999885
No 51
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=80.20 E-value=12 Score=41.14 Aligned_cols=31 Identities=23% Similarity=0.303 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 019400 282 QAHLTELETQVSQLRVENSSLLKRLTDISQK 312 (341)
Q Consensus 282 ka~leeLE~qV~~L~~EN~~L~~rl~~L~qk 312 (341)
++..++|+.+|..|+.||+.|.+++.+|+..
T Consensus 1015 ~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~ 1045 (1080)
T 2dfs_A 1015 DKYKHETEQLVSELKEQNTLLKTEKEELNRR 1045 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445688888888999998888888888743
No 52
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=80.18 E-value=2.9 Score=41.28 Aligned_cols=53 Identities=15% Similarity=0.231 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 283 a~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
..+.+|++++++|+.++..+..++..+.+++.....+.+.|.-++++|+..|+
T Consensus 10 ~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gnIr 62 (412)
T 3u06_A 10 TEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDNIR 62 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Confidence 56778888888888888888888888888888888999999999999876554
No 53
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=80.13 E-value=2.3 Score=28.60 Aligned_cols=25 Identities=12% Similarity=0.238 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Q 019400 285 LTELETQVSQLRVENSSLLKRLTDI 309 (341)
Q Consensus 285 leeLE~qV~~L~~EN~~L~~rl~~L 309 (341)
|..||.+|+.|-.+|..|..++..|
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RL 26 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARI 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4567777777666666666555544
No 54
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=80.05 E-value=7.7 Score=28.19 Aligned_cols=40 Identities=28% Similarity=0.497 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETL 330 (341)
Q Consensus 284 ~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~L 330 (341)
.+.+|..++..|...|..|..-+...++ +=..|+++|+.|
T Consensus 10 r~~~l~~~l~~L~~rN~rL~~~L~~AR~-------el~~Lkeele~L 49 (51)
T 3m91_A 10 DIHQLEARIDSLAARNSKLMETLKEARQ-------QLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHh
Confidence 3446677777777777777666655543 344555666555
No 55
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=79.99 E-value=2.1 Score=31.16 Aligned_cols=32 Identities=9% Similarity=0.199 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 304 KRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 304 ~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
..+..|..+...|..||..|+.++..|+..+.
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~~ 53 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKDLYS 53 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45667777788889999999999999987654
No 56
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=79.88 E-value=3.2 Score=30.19 Aligned_cols=20 Identities=20% Similarity=0.403 Sum_probs=13.7
Q ss_pred HHHHHHHHHhHHHHHHHHHH
Q 019400 290 TQVSQLRVENSSLLKRLTDI 309 (341)
Q Consensus 290 ~qV~~L~~EN~~L~~rl~~L 309 (341)
..|+.|+.||..|+.++..|
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L 38 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAI 38 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 56777777777776665554
No 57
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=79.10 E-value=2.4 Score=28.73 Aligned_cols=26 Identities=12% Similarity=0.218 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019400 284 HLTELETQVSQLRVENSSLLKRLTDI 309 (341)
Q Consensus 284 ~leeLE~qV~~L~~EN~~L~~rl~~L 309 (341)
+|..||.+|+.|-.+|..|..++..|
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RL 27 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARI 27 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 35667777777777777776666555
No 58
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=79.08 E-value=2.4 Score=28.71 Aligned_cols=27 Identities=19% Similarity=0.327 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019400 284 HLTELETQVSQLRVENSSLLKRLTDIS 310 (341)
Q Consensus 284 ~leeLE~qV~~L~~EN~~L~~rl~~L~ 310 (341)
++..||.+|+.|-.+|..|..++..|.
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~ 28 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLA 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 456778888877777777766665553
No 59
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=79.02 E-value=10 Score=32.14 Aligned_cols=41 Identities=24% Similarity=0.357 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 289 ETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVET 329 (341)
Q Consensus 289 E~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~ 329 (341)
..+|+.|+.|+..|..+|.....+...+..+|..|...+..
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~ 110 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIAD 110 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhh
Confidence 44588888888888888888888888889999988887754
No 60
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=79.00 E-value=7.5 Score=34.10 Aligned_cols=51 Identities=16% Similarity=0.096 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAK 333 (341)
Q Consensus 283 a~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRak 333 (341)
..+.+|+..+..-...+..|..++..|+-++..++...+.|+++-..|-.|
T Consensus 82 ~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~R 132 (152)
T 3a7p_A 82 QEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVAR 132 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444555555555555555555555555555554444
No 61
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=78.74 E-value=19 Score=31.92 Aligned_cols=63 Identities=16% Similarity=0.234 Sum_probs=38.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 261 AKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETL 330 (341)
Q Consensus 261 ~KR~RRklsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~L 330 (341)
++-...+..-=+.=|+.|.+-.+.+.+|+.++..|+.|...++.++.. +..+|+.|...+..|
T Consensus 68 eke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k-------~~~e~r~L~Ekl~~l 130 (168)
T 3o0z_A 68 DKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEK-------VEGERKEAQDMLNHS 130 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 334445555556667777777777777877777777666665554443 344555554444444
No 62
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=78.65 E-value=2.8 Score=28.24 Aligned_cols=26 Identities=8% Similarity=0.124 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019400 285 LTELETQVSQLRVENSSLLKRLTDIS 310 (341)
Q Consensus 285 leeLE~qV~~L~~EN~~L~~rl~~L~ 310 (341)
|..||.+|+.|-.+|..|..++..++
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~ 27 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNT 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 56788888887777777766665553
No 63
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=78.34 E-value=2.6 Score=28.55 Aligned_cols=26 Identities=12% Similarity=0.365 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019400 284 HLTELETQVSQLRVENSSLLKRLTDI 309 (341)
Q Consensus 284 ~leeLE~qV~~L~~EN~~L~~rl~~L 309 (341)
+|..||.+|+.|-.+|..|..++..|
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RL 27 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARI 27 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHH
Confidence 45667777777777766666665554
No 64
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=78.32 E-value=4 Score=30.32 Aligned_cols=29 Identities=17% Similarity=0.310 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019400 306 LTDISQKYNEAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 306 l~~L~qk~~~l~~EN~~Lkaqle~LRakV 334 (341)
...|.++...+..+|..|+.++..|+..+
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~ 53 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEI 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555444
No 65
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=77.33 E-value=4.7 Score=29.57 Aligned_cols=31 Identities=23% Similarity=0.371 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 305 RLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 305 rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
.+..|..++..+..+|..|+.++..|+..+.
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVA 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666777777777777766554
No 66
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=77.21 E-value=12 Score=33.16 Aligned_cols=50 Identities=30% Similarity=0.297 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 277 SRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVE 328 (341)
Q Consensus 277 SR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle 328 (341)
-|.||++ .+|...+..++..+.+|..++..|......+..+...|.+++.
T Consensus 30 ~rlkK~~--tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~ 79 (168)
T 3o0z_A 30 VRLRKSH--TEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILE 79 (168)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445544 5555555555555555555555555555555555544444443
No 67
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=77.04 E-value=3.7 Score=27.80 Aligned_cols=31 Identities=10% Similarity=0.078 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 305 RLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 305 rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
++..|..++..+..+|..|..++..|+.-|+
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIXKLLX 32 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 3556677777788899999999999998775
No 68
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=76.86 E-value=7.3 Score=32.55 Aligned_cols=25 Identities=24% Similarity=0.482 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH
Q 019400 283 AHLTELETQVSQLRVENSSLLKRLT 307 (341)
Q Consensus 283 a~leeLE~qV~~L~~EN~~L~~rl~ 307 (341)
.-+++|..++.+|+.||..|++++.
T Consensus 8 ~t~EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 8 KTYEEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4579999999999999999999986
No 69
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=76.76 E-value=8.4 Score=29.94 Aligned_cols=49 Identities=31% Similarity=0.242 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLR 331 (341)
Q Consensus 283 a~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LR 331 (341)
+++.+||.++..++.-..+|...+....++...+..+-+.|..++..+.
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567777777776666666666666555555555555554444444443
No 70
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=76.70 E-value=13 Score=26.58 Aligned_cols=45 Identities=27% Similarity=0.405 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019400 287 ELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 287 eLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV 334 (341)
+||.+|+.|+.--..|..+++.|.-+|.. -...||+.|..|..+|
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~s---sq~KlKqRit~lE~~v 46 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNA---TQMKMKQRLSQLESQV 46 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcC
Confidence 57777877777777777777766544433 3567888888776654
No 71
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=76.17 E-value=15 Score=30.74 Aligned_cols=49 Identities=27% Similarity=0.388 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019400 279 RRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 279 ~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV 334 (341)
..-+.++..|+.+|..|+.+ |..-+...+.+..||..|+.+++.|+...
T Consensus 36 ~E~q~~v~ql~~~i~~Le~e-------L~e~r~~~q~a~~e~e~Lr~e~~~l~~~~ 84 (120)
T 3i00_A 36 TESQRVVLQLKGHVSELEAD-------LAEQQHLRQQAADDCEFLRAELDELRRQR 84 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344555555555555554 44445556677899999999999886543
No 72
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=75.98 E-value=3.1 Score=39.15 Aligned_cols=42 Identities=21% Similarity=0.324 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 282 QAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVL 323 (341)
Q Consensus 282 ka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~L 323 (341)
-..+.+|+.++..|...|..|...+..+++++..+..|+..|
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344667888888888888878777777755554444444443
No 73
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=75.90 E-value=12 Score=33.65 Aligned_cols=35 Identities=20% Similarity=0.067 Sum_probs=15.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 292 VSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKAD 326 (341)
Q Consensus 292 V~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaq 326 (341)
+..|+.+...|......+..++..++..|..|...
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~ 124 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERA 124 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 44444444444444444444444444444444333
No 74
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=75.65 E-value=3.5 Score=31.63 Aligned_cols=15 Identities=27% Similarity=0.160 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHh
Q 019400 320 NRVLKADVETLRAKV 334 (341)
Q Consensus 320 N~~Lkaqle~LRakV 334 (341)
...|+.+...|+++|
T Consensus 63 ~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 63 IDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333444333
No 75
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=75.63 E-value=17 Score=28.96 Aligned_cols=24 Identities=8% Similarity=0.307 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 307 TDISQKYNEAAVDNRVLKADVETL 330 (341)
Q Consensus 307 ~~L~qk~~~l~~EN~~Lkaqle~L 330 (341)
..|+.+...+..+|..|..++..|
T Consensus 59 ~~Lr~~i~~~~~ek~~l~~e~dnl 82 (93)
T 3s4r_A 59 RELRRQVDQLTNDKARVEVERDNL 82 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333
No 76
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=75.56 E-value=20 Score=27.96 Aligned_cols=30 Identities=20% Similarity=0.327 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 019400 282 QAHLTELETQVSQLRVENSSLLKRLTDISQ 311 (341)
Q Consensus 282 ka~leeLE~qV~~L~~EN~~L~~rl~~L~q 311 (341)
+..+.+|+.+-..|+.+...|..++..|.+
T Consensus 42 ~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ 71 (78)
T 1gu4_A 42 QHKVLELTAENERLQKKVEQLSRELSTLRN 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777777777777766666643
No 77
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=75.30 E-value=4.4 Score=27.27 Aligned_cols=30 Identities=10% Similarity=0.146 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 306 LTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 306 l~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
+.+|..++..+..+|..|..++..|+.-|+
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 345666777778899999999999998775
No 78
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=74.05 E-value=16 Score=28.83 Aligned_cols=46 Identities=20% Similarity=0.317 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETL 330 (341)
Q Consensus 285 leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~L 330 (341)
+-+|..+++.|+.|...|+-+++.+..+...+....+.+-.++..+
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~R 67 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSL 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666666555555555555555555443
No 79
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=74.02 E-value=11 Score=29.56 Aligned_cols=48 Identities=19% Similarity=0.263 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019400 286 TELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMH 336 (341)
Q Consensus 286 eeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~m 336 (341)
++||.+|..|+.--..|..++..|.-+|.. -...||+.|..|..+|+.
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaEy~s---sQ~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAEYES---MQQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcc
Confidence 457777777777777777777666544433 356788888888877763
No 80
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=73.78 E-value=5 Score=27.47 Aligned_cols=31 Identities=23% Similarity=0.228 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019400 306 LTDISQKYNEAAVDNRVLKADVETLRAKVMH 336 (341)
Q Consensus 306 l~~L~qk~~~l~~EN~~Lkaqle~LRakV~m 336 (341)
+.+|..+...+..+|..|..++..|+..|+-
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 4455556666677888888888888887764
No 81
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=73.40 E-value=31 Score=27.08 Aligned_cols=56 Identities=13% Similarity=0.211 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019400 279 RRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 279 ~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV 334 (341)
+|=++.+..-..+++.|+.-..+|..--+.|......+..|-..|...++.|+.+.
T Consensus 14 rrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~ 69 (78)
T 3iv1_A 14 WRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKD 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666667777766666666666666666666777777777777776664
No 82
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=73.22 E-value=9.1 Score=29.71 Aligned_cols=52 Identities=19% Similarity=0.187 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019400 286 TELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMHS 337 (341)
Q Consensus 286 eeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ma 337 (341)
.+|+.++..|+..-..+...+..|++.......+-..|+.++..|..|++-.
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~ 61 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 61 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678888888888888888888888888888888888888888888887643
No 83
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=73.00 E-value=38 Score=32.63 Aligned_cols=29 Identities=21% Similarity=0.123 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019400 281 KQAHLTELETQVSQLRVENSSLLKRLTDI 309 (341)
Q Consensus 281 Kka~leeLE~qV~~L~~EN~~L~~rl~~L 309 (341)
..++++....++++|+.||..|.+.+.++
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (487)
T 3oja_A 433 AIRDWDMYQHKETQLAEENARLKKLNGEA 461 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhHHHHHHHHhhhhhhhhhhh
Confidence 33444444444444444444444444333
No 84
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=72.92 E-value=31 Score=26.83 Aligned_cols=54 Identities=11% Similarity=0.116 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 282 QAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 282 ka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
...+..+...+..|+.+-..++..+....+.|+.+..=--.|..+|.+.|.-|-
T Consensus 27 ~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLLE 80 (86)
T 1x8y_A 27 ARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 446677778888888888888888888888888888777788899999887664
No 85
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=72.83 E-value=3.2 Score=38.38 Aligned_cols=75 Identities=23% Similarity=0.251 Sum_probs=35.5
Q ss_pred HHHHHHHHHHh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 260 DAKRVRRMLSN-------RESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRA 332 (341)
Q Consensus 260 e~KR~RRklsN-------RESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRa 332 (341)
+.+|.||.++- ||...---.....+.+++..++++|+.||+++..++..++.+..+..++---.+..+..|..
T Consensus 118 ~~~Rt~~iLSalINF~~FRE~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~te~~p~~k~~~qly~ 197 (250)
T 2ve7_C 118 KAKRTSRFLSGIINFIHFREACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTVTIPSAVYVAQLYH 197 (250)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC-------------CTTTHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence 37888888654 44444444444455556666666677777776666666665554444333222344444444
Q ss_pred Hh
Q 019400 333 KV 334 (341)
Q Consensus 333 kV 334 (341)
.|
T Consensus 198 ~v 199 (250)
T 2ve7_C 198 QV 199 (250)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 86
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=71.97 E-value=34 Score=27.79 Aligned_cols=67 Identities=13% Similarity=0.121 Sum_probs=46.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 267 MLSNRESARRSRRRKQAHLTELETQVSQLR---VENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAK 333 (341)
Q Consensus 267 klsNRESARRSR~RKka~leeLE~qV~~L~---~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRak 333 (341)
+..|-.+|-..=..|+..+++|...+.+++ ..+.-|..++......|..-.+.-..|..+.+.|...
T Consensus 7 L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~q 76 (94)
T 3jsv_C 7 LRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQ 76 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 344566777777889999999998888887 5566788888877777776665554444444444433
No 87
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=71.88 E-value=25 Score=29.08 Aligned_cols=47 Identities=15% Similarity=0.222 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVET 329 (341)
Q Consensus 283 a~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~ 329 (341)
+..-..|.+|+.|+.++.+|+.++.....-..++..+|..|+.+...
T Consensus 11 ~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~lq~~~~~ 57 (125)
T 1joc_A 11 ERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQIKHTQ 57 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Confidence 34455666788888888888888887777777777778777655443
No 88
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=71.68 E-value=30 Score=27.49 Aligned_cols=56 Identities=20% Similarity=0.356 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 019400 261 AKRVRRMLSNRESARRSRRR---KQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEA 316 (341)
Q Consensus 261 ~KR~RRklsNRESARRSR~R---Kka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l 316 (341)
+||.|=-+.=|.|-...|.| -+..+++|+.+-..|+.+...|..++..|.+-+..+
T Consensus 18 ~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~ 76 (87)
T 1hjb_A 18 IRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQL 76 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 34444334333333333333 345577888888888888888888888776665543
No 89
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=71.53 E-value=8.3 Score=27.23 Aligned_cols=24 Identities=38% Similarity=0.403 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHH
Q 019400 283 AHLTELETQVSQLRVENSSLLKRL 306 (341)
Q Consensus 283 a~leeLE~qV~~L~~EN~~L~~rl 306 (341)
....+||.+|..|+.||+-|++-+
T Consensus 17 ~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 17 NKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHh
Confidence 456788889999999988887644
No 90
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=71.46 E-value=23 Score=29.23 Aligned_cols=75 Identities=12% Similarity=0.239 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 258 PVDAKRVRRMLSNRESARRSRRRK--QAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 258 ~~e~KR~RRklsNRESARRSR~RK--ka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
+.++|=.+-|++| |+-==.|- .=+++-|.-.++.++....+|.+++.+....+..+......|+.++..|+..|.
T Consensus 6 EvEEKyrKAMVsn---AQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~ 82 (103)
T 4h22_A 6 EVEEKYKKAMVSN---AQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALK 82 (103)
T ss_dssp --CCTHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777776 22211111 112344444555555555556666666666666666777777777777777665
No 91
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=71.02 E-value=4.7 Score=37.93 Aligned_cols=44 Identities=23% Similarity=0.297 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 289 ETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRA 332 (341)
Q Consensus 289 E~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRa 332 (341)
+.++..|+.++..|..++..|.+.+..+..|...||++++.|++
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 66788888888888888888888888888888888888888763
No 92
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=70.87 E-value=25 Score=34.54 Aligned_cols=32 Identities=13% Similarity=0.216 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 304 KRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 304 ~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
+++..+++++......-..|++++..++++++
T Consensus 544 ~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~ 575 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQAELRQETSLKRQKVK 575 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444443
No 93
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=70.63 E-value=28 Score=25.25 Aligned_cols=29 Identities=24% Similarity=0.368 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019400 306 LTDISQKYNEAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 306 l~~L~qk~~~l~~EN~~Lkaqle~LRakV 334 (341)
+..|..++..+..+|..|+.++..|+..+
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~ 52 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEV 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555555555555443
No 94
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=70.47 E-value=2.8 Score=38.61 Aligned_cols=41 Identities=22% Similarity=0.276 Sum_probs=19.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 019400 294 QLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMHSS 338 (341)
Q Consensus 294 ~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ma~ 338 (341)
.|..||.+|++++..|+++ ..+...|++|.+.||..|++..
T Consensus 23 ~l~~eN~~Lk~e~~~l~~~----~~~~~~l~~En~rLr~lL~~~~ 63 (255)
T 2j5u_A 23 NTYTENQHLKERLEELAQL----ESEVADLKKENKDLKESLDITD 63 (255)
T ss_dssp ---CTTTTHHHHHHHHHHH----HHHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhcCcc
Confidence 3455566666555555433 2333444555566666665543
No 95
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=70.26 E-value=40 Score=26.94 Aligned_cols=56 Identities=14% Similarity=0.190 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019400 281 KQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMH 336 (341)
Q Consensus 281 Kka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~m 336 (341)
+-..+..|..++..|+.+-..+..++....+++......-..-..++..|.+||.+
T Consensus 42 ~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rriql 97 (101)
T 3u1c_A 42 LEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQL 97 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444443333333333333333333222222233366666666653
No 96
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=69.89 E-value=17 Score=26.53 Aligned_cols=50 Identities=18% Similarity=0.231 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 286 TELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 286 eeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
.+++..+..|+.+.+.++..+....+.|+.+..=--.|-.+|.+-|.-|-
T Consensus 3 ~~~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRkLLE 52 (59)
T 1gk6_A 3 KQLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRKLLE 52 (59)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 45666677777777777777777778888888777788889999887764
No 97
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=69.87 E-value=7.8 Score=30.61 Aligned_cols=39 Identities=18% Similarity=0.166 Sum_probs=30.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 297 VENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 297 ~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
.||..|..++..+......+..||+.|+.-+...+.-+.
T Consensus 34 ~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~~lae 72 (79)
T 2zxx_A 34 KENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAE 72 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888888888888888877776665443
No 98
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=69.63 E-value=8.1 Score=25.51 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Q 019400 286 TELETQVSQLRVENSSLLKRLTDI 309 (341)
Q Consensus 286 eeLE~qV~~L~~EN~~L~~rl~~L 309 (341)
..||.+|.+.+.||-.|.+++..|
T Consensus 4 aqlekevaqaeaenyqleqevaql 27 (33)
T 1fmh_A 4 AQLEKEVAQAEAENYQLEQEVAQL 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Confidence 345555555555555555544444
No 99
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=69.48 E-value=7.1 Score=35.39 Aligned_cols=43 Identities=26% Similarity=0.373 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019400 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 285 leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV 334 (341)
|+.-..-|..|..||..|..++.. ...|+..|+.+++.|+..+
T Consensus 15 l~~ad~LV~~L~~En~~L~~ql~~-------k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 15 IDSADLLVANLVNENFVLSEKLDT-------KATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp -----CHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhh
Confidence 333334455555555555444443 3444555555555555443
No 100
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=69.38 E-value=38 Score=32.65 Aligned_cols=50 Identities=20% Similarity=0.165 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 276 RSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKA 325 (341)
Q Consensus 276 RSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lka 325 (341)
+--...+..++.|+++-+.|+.+..++..++....+.|+++...-..|-.
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (487)
T 3oja_A 435 RDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQNLAS 484 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHHHHH
Confidence 33344444444444444555555555555555555555544444444433
No 101
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=69.15 E-value=8.1 Score=28.05 Aligned_cols=17 Identities=24% Similarity=0.411 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019400 300 SSLLKRLTDISQKYNEA 316 (341)
Q Consensus 300 ~~L~~rl~~L~qk~~~l 316 (341)
..|+.++.+|++++..|
T Consensus 22 eaLk~E~~eLk~k~~~L 38 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAI 38 (53)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444443333333
No 102
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=68.51 E-value=30 Score=38.06 Aligned_cols=19 Identities=16% Similarity=0.169 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019400 314 NEAAVDNRVLKADVETLRA 332 (341)
Q Consensus 314 ~~l~~EN~~Lkaqle~LRa 332 (341)
..+..+...|..++..|..
T Consensus 916 ~~l~~~~~~Le~~l~ele~ 934 (1184)
T 1i84_S 916 VRLAAKKQELEEILHEMEA 934 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444333
No 103
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=68.27 E-value=9.8 Score=29.45 Aligned_cols=20 Identities=20% Similarity=0.227 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHhHHH
Q 019400 283 AHLTELETQVSQLRVENSSL 302 (341)
Q Consensus 283 a~leeLE~qV~~L~~EN~~L 302 (341)
.|+..|+.+...|..++..|
T Consensus 47 ~yI~~L~~~~~~l~~e~~~L 66 (80)
T 1nlw_A 47 LHIKKLEDSDRKAVHQIDQL 66 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444443333
No 104
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=67.84 E-value=6.7 Score=26.57 Aligned_cols=31 Identities=13% Similarity=0.250 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 305 RLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 305 rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
++..|..++..+..+|..|..++..|+.-|+
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~lL~ 32 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIKKLLG 32 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHHHHhc
Confidence 3455666777778889999999999988765
No 105
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=67.48 E-value=23 Score=25.69 Aligned_cols=34 Identities=15% Similarity=0.218 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 302 LLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 302 L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
|..++..|..+...|..--+.-+.+|..|+..|.
T Consensus 14 l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele 47 (51)
T 3m91_A 14 LEARIDSLAARNSKLMETLKEARQQLLALREEVD 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444445556666777777776653
No 106
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=67.08 E-value=22 Score=29.34 Aligned_cols=47 Identities=17% Similarity=0.121 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVET 329 (341)
Q Consensus 283 a~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~ 329 (341)
..++++|..+.+++.++.+..+.+..+...+..+..+-..|+.++..
T Consensus 37 D~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~q 83 (103)
T 4h22_A 37 DMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQ 83 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777777777777777777777776653
No 107
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=66.88 E-value=2.7 Score=38.79 Aligned_cols=41 Identities=17% Similarity=0.225 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVE 328 (341)
Q Consensus 284 ~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle 328 (341)
.+..|.++.+.|+.||..|..++.. +..+..||..|++.+.
T Consensus 20 ~~~~l~~eN~~Lk~e~~~l~~~~~~----~~~l~~En~rLr~lL~ 60 (255)
T 2j5u_A 20 DLKNTYTENQHLKERLEELAQLESE----VADLKKENKDLKESLD 60 (255)
T ss_dssp ------CTTTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhc
Confidence 3445667777888888877766554 4667888988887653
No 108
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=66.70 E-value=42 Score=25.82 Aligned_cols=50 Identities=12% Similarity=0.142 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 286 TELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 286 eeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
+.+...+..|+.+-+.++..+....+.|+.+..=--.|..+|.+.|.-|.
T Consensus 8 ~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkLLE 57 (74)
T 2xv5_A 8 DTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE 57 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444555555555555555666677777666778888888886654
No 109
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=66.20 E-value=5 Score=29.26 Aligned_cols=26 Identities=8% Similarity=0.248 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019400 284 HLTELETQVSQLRVENSSLLKRLTDI 309 (341)
Q Consensus 284 ~leeLE~qV~~L~~EN~~L~~rl~~L 309 (341)
.|+.+...++.|..||..|..++..+
T Consensus 28 FLd~v~~~~~~l~~e~~~L~~~~~~l 53 (57)
T 2wuj_A 28 FLAQVRKDYEIVLRKKTELEAKVNEL 53 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433
No 110
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=66.18 E-value=12 Score=29.57 Aligned_cols=42 Identities=24% Similarity=0.323 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 286 TELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADV 327 (341)
Q Consensus 286 eeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaql 327 (341)
++|-.+|+.|..|+..|..++..+++-...+...+..|..++
T Consensus 33 ~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 33 NDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666666555554444444444443
No 111
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=66.15 E-value=42 Score=25.62 Aligned_cols=51 Identities=10% Similarity=0.115 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 285 leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
++.++.++...+..+..+...+..|+.+...+..+=..+...+.....+|.
T Consensus 22 ~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLe 72 (81)
T 1ic2_A 22 AEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLE 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444443
No 112
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=65.85 E-value=22 Score=27.91 Aligned_cols=44 Identities=11% Similarity=0.200 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 019400 276 RSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVD 319 (341)
Q Consensus 276 RSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~E 319 (341)
++-..=+..++.|..+|..|+..+..+..++..+.++...+..+
T Consensus 20 q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~d 63 (83)
T 2xdj_A 20 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQ 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456678889999999999999999999999888876665543
No 113
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=65.83 E-value=9.8 Score=26.13 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=23.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 297 VENSSLLKRLTDISQKYNEAAVDNRVLK 324 (341)
Q Consensus 297 ~EN~~L~~rl~~L~qk~~~l~~EN~~Lk 324 (341)
.||..|.+.++.-.++...+..+|..|+
T Consensus 7 ~ENekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 7 KENEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 5788899999888888888888887665
No 114
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=65.83 E-value=9.2 Score=29.50 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=16.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 019400 266 RMLSNRESARRSRRRKQAHLTELETQVS 293 (341)
Q Consensus 266 RklsNRESARRSR~RKka~leeLE~qV~ 293 (341)
|+...-.+-|+.|.+=...+.+|..-|-
T Consensus 6 rr~~H~~~ErrRR~~in~~f~~L~~lvP 33 (82)
T 1am9_A 6 KRTAHNAIEKRYRSSINDKIIELKDLVV 33 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHhcc
Confidence 3334445556656555667777776654
No 115
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=65.61 E-value=58 Score=27.12 Aligned_cols=65 Identities=14% Similarity=0.196 Sum_probs=37.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHh
Q 019400 270 NRESARRSRRRKQAHLTELETQVSQLRV---ENSSLLKRLTDISQKYNE-------AAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 270 NRESARRSR~RKka~leeLE~qV~~L~~---EN~~L~~rl~~L~qk~~~-------l~~EN~~Lkaqle~LRakV 334 (341)
|-.+|-..=..|+..+++|..++.+++. ...-|..++......|.. +..+...|..++..|+.++
T Consensus 32 ~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 32 QLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREF 106 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHH
Confidence 3345555555566677777766666665 444555666555555544 3455556666666666554
No 116
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=65.49 E-value=8.8 Score=25.98 Aligned_cols=31 Identities=13% Similarity=0.188 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 305 RLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 305 rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
++..|..+...+..+|..|..++..|+.-|+
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~LL~ 32 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIKKLLG 32 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHHc
Confidence 3455666777778889999999999988765
No 117
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=65.40 E-value=9.3 Score=25.89 Aligned_cols=18 Identities=22% Similarity=0.386 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019400 313 YNEAAVDNRVLKADVETL 330 (341)
Q Consensus 313 ~~~l~~EN~~Lkaqle~L 330 (341)
..++..+|..|.+|+..|
T Consensus 16 IddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 16 IDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 333355566666666544
No 118
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=64.96 E-value=37 Score=27.10 Aligned_cols=33 Identities=6% Similarity=0.101 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019400 286 TELETQVSQLRVENSSLLKRLTDISQKYNEAAV 318 (341)
Q Consensus 286 eeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~ 318 (341)
+.++.++..++.++..+-..+..|+.++..+..
T Consensus 26 e~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~ 58 (101)
T 3u1c_A 26 EQAEADKKAAEERSKQLEDDIVQLEKQLRVTED 58 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444333333
No 119
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=64.91 E-value=9.5 Score=25.82 Aligned_cols=30 Identities=23% Similarity=0.215 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 306 LTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 306 l~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
+.+|..+...+..+|..|..++..|+.-|+
T Consensus 3 MnQLEdkVEeLl~~~~~Le~eV~RL~~ll~ 32 (34)
T 2hy6_A 3 VKQLADAVEELASANYHLANAVARLAKAVG 32 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 345556666677889999999999988765
No 120
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=64.88 E-value=9 Score=25.95 Aligned_cols=27 Identities=7% Similarity=0.190 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019400 284 HLTELETQVSQLRVENSSLLKRLTDIS 310 (341)
Q Consensus 284 ~leeLE~qV~~L~~EN~~L~~rl~~L~ 310 (341)
+|..||.+|+.|-.+|..|..++..|.
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~ 28 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVA 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 356777777777777777766665553
No 121
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=64.39 E-value=33 Score=26.80 Aligned_cols=30 Identities=13% Similarity=0.088 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 302 LLKRLTDISQKYNEAAVDNRVLKADVETLR 331 (341)
Q Consensus 302 L~~rl~~L~qk~~~l~~EN~~Lkaqle~LR 331 (341)
|..+...+..+...+..+|..|+.+++.|+
T Consensus 57 L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 57 VQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333333344455677888888887775
No 122
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=63.53 E-value=63 Score=26.79 Aligned_cols=57 Identities=21% Similarity=0.332 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 273 SARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVET 329 (341)
Q Consensus 273 SARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~ 329 (341)
.-|..+..=+.|+-+||..-+.|+........-+.++..+|+.+...|.-|..++.+
T Consensus 46 ~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~E 102 (111)
T 2v66_B 46 QTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDE 102 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566667788889999999999988888899999999999999999999988864
No 123
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=63.48 E-value=5 Score=31.58 Aligned_cols=24 Identities=21% Similarity=0.425 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 302 LLKRLTDISQKYNEAAVDNRVLKA 325 (341)
Q Consensus 302 L~~rl~~L~qk~~~l~~EN~~Lka 325 (341)
|+.++.+|..+...|+.||..||.
T Consensus 20 LKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 20 LKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444555666666654
No 124
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=63.42 E-value=22 Score=27.58 Aligned_cols=27 Identities=26% Similarity=0.249 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 019400 281 KQAHLTELETQVSQLRVENSSLLKRLT 307 (341)
Q Consensus 281 Kka~leeLE~qV~~L~~EN~~L~~rl~ 307 (341)
|...+.+|+.++.....+...|+.++.
T Consensus 38 kd~~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 38 RDALIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555544443
No 125
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=63.14 E-value=9.9 Score=26.08 Aligned_cols=30 Identities=23% Similarity=0.318 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 300 SSLLKRLTDISQKYNEAAVDNRVLKADVET 329 (341)
Q Consensus 300 ~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~ 329 (341)
+.|-.++.....+...++.+|+.|..++..
T Consensus 9 q~LNdrlAsyidkVR~LE~~N~~Le~~i~~ 38 (39)
T 1gk7_A 9 QELNDRFANYIDKVRFLEQQNKILLAELEQ 38 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445556666667777888888887777643
No 126
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=63.10 E-value=28 Score=31.95 Aligned_cols=38 Identities=18% Similarity=0.203 Sum_probs=25.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019400 297 VENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 297 ~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV 334 (341)
.||..|..++..+......+..+|..|+.-++.++...
T Consensus 115 eEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la 152 (209)
T 2wvr_A 115 KENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMA 152 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777777777777776666655443
No 127
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=63.06 E-value=27 Score=30.51 Aligned_cols=46 Identities=22% Similarity=0.242 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 288 LETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAK 333 (341)
Q Consensus 288 LE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRak 333 (341)
|+.++.....+...|..++..-..+...++.+...+..+++.|.+.
T Consensus 49 l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTas 94 (154)
T 2ocy_A 49 LKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTAS 94 (154)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444444444443
No 128
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=62.73 E-value=31 Score=26.96 Aligned_cols=49 Identities=16% Similarity=0.272 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRA 332 (341)
Q Consensus 284 ~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRa 332 (341)
++.+=+.++..|+...+-=.+-.+.|+-..-.+..||..|...+..|++
T Consensus 26 eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~~ 74 (75)
T 3a7o_A 26 ELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLKK 74 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence 3344444455554443333344455666667778899999888877764
No 129
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=62.69 E-value=7.7 Score=30.53 Aligned_cols=22 Identities=36% Similarity=0.377 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHH
Q 019400 283 AHLTELETQVSQLRVENSSLLK 304 (341)
Q Consensus 283 a~leeLE~qV~~L~~EN~~L~~ 304 (341)
.++.+|+.++.+|+.||.-|+.
T Consensus 22 e~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 22 EQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5667788888888888776653
No 130
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=62.36 E-value=23 Score=26.93 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 304 KRLTDISQKYNEAAVDNRVLKADVETL 330 (341)
Q Consensus 304 ~rl~~L~qk~~~l~~EN~~Lkaqle~L 330 (341)
.++..+..+...+..+|..|++++..|
T Consensus 54 ~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 54 RKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333444444556677777776654
No 131
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=61.56 E-value=37 Score=30.71 Aligned_cols=51 Identities=8% Similarity=0.043 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019400 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 284 ~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV 334 (341)
.+.+|+.++..|+..-..+..++..+..+...+..+=..+++.+...+.++
T Consensus 33 el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l 83 (256)
T 3na7_A 33 DLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKM 83 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443333333333333333333333333
No 132
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=61.55 E-value=8 Score=28.17 Aligned_cols=29 Identities=21% Similarity=0.395 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019400 306 LTDISQKYNEAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 306 l~~L~qk~~~l~~EN~~Lkaqle~LRakV 334 (341)
|..+.+.+..+..||..|+.++..|..+|
T Consensus 29 Ld~v~~~~~~l~~e~~~L~~~~~~l~~~l 57 (57)
T 2wuj_A 29 LAQVRKDYEIVLRKKTELEAKVNELDERI 57 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34456677778889999999998887764
No 133
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=61.53 E-value=37 Score=24.08 Aligned_cols=34 Identities=21% Similarity=0.208 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 019400 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEA 316 (341)
Q Consensus 283 a~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l 316 (341)
.++.+++.++..++.+-..+..++..+.+.+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~ 45 (60)
T 3htk_A 12 NQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTI 45 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443333333
No 134
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=61.40 E-value=17 Score=28.47 Aligned_cols=18 Identities=22% Similarity=0.405 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 019400 317 AVDNRVLKADVETLRAKV 334 (341)
Q Consensus 317 ~~EN~~Lkaqle~LRakV 334 (341)
..+...|+.+...|+.+|
T Consensus 65 ~~~~~~L~~~n~~L~~rl 82 (88)
T 1nkp_A 65 ISEEDLLRKRREQLKHKL 82 (88)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333444444444443
No 135
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=61.11 E-value=27 Score=26.65 Aligned_cols=33 Identities=24% Similarity=0.271 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 019400 282 QAHLTELETQVSQLRVENSSLLKRLTDISQKYN 314 (341)
Q Consensus 282 ka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~ 314 (341)
...+.+.+.+...+..+...|.+++..+...+.
T Consensus 26 e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld 58 (81)
T 1ic2_A 26 EADKKAAEERSKQLEDELVALQKKLKGTEDELD 58 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444433
No 136
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=60.62 E-value=13 Score=24.48 Aligned_cols=29 Identities=17% Similarity=0.296 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 307 TDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 307 ~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
..|.....++++||-.|.+++..|...++
T Consensus 4 aqlekevaqaeaenyqleqevaqlehecg 32 (33)
T 1fmh_A 4 AQLEKEVAQAEAENYQLEQEVAQLEHECG 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhcC
Confidence 44555666778999999999999876553
No 137
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=60.59 E-value=54 Score=26.08 Aligned_cols=33 Identities=21% Similarity=0.235 Sum_probs=20.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 297 VENSSLLKRLTDISQKYNEAAVDNRVLKADVET 329 (341)
Q Consensus 297 ~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~ 329 (341)
.||..|..++..+......+..+|..|+.-++.
T Consensus 46 ~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~ 78 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEIARLKKENKELAEVAEH 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777765555555555555544443
No 138
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=59.22 E-value=1e+02 Score=27.79 Aligned_cols=30 Identities=3% Similarity=0.156 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 019400 286 TELETQVSQLRVENSSLLKRLTDISQKYNE 315 (341)
Q Consensus 286 eeLE~qV~~L~~EN~~L~~rl~~L~qk~~~ 315 (341)
..|+.+++.++.+...|..++..+..+...
T Consensus 93 ~aL~kEie~~~~~i~~lE~eile~~e~ie~ 122 (256)
T 3na7_A 93 RSLNIEEDIAKERSNQANREIENLQNEIKR 122 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444333333
No 139
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=58.92 E-value=19 Score=28.55 Aligned_cols=47 Identities=21% Similarity=0.256 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 287 ELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 287 eLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
..-.+|..|+.+|..|..++..+.++... .--.....+|..||..|.
T Consensus 20 syIdKVR~LEqqN~~Le~~i~~l~~~~~~--~~~~~ye~~i~~Lr~~i~ 66 (93)
T 3s4r_A 20 NLIDKVRFLEQQNKILLAELEQLKGQGKS--RLGDLYEEEMRELRRQVD 66 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCC--CcHHHHHHHHHHHHHHHH
Confidence 33467889999999999998888765322 122334566666666654
No 140
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=58.90 E-value=45 Score=31.01 Aligned_cols=68 Identities=18% Similarity=0.278 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 259 VDAKRVRRMLSNRESA-RRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLR 331 (341)
Q Consensus 259 ~e~KR~RRklsNRESA-RRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LR 331 (341)
.+-|-.=.-++|||.. +.+|.||+.-.+++ ..|+.... -..++..|++++..++++|-+..+++..+.
T Consensus 90 d~yR~~LK~IR~~E~svqp~R~~R~~l~~~I----~kLk~k~P-~s~kl~~LeqELvraEae~lvaEAqL~n~k 158 (234)
T 3plt_A 90 DQYRVTLKSIRNIEASVQPSRDRKEKITDEI----AHLKYKDP-QSTKIPVLEQELVRAEAESLVAEAQLSNIT 158 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHCT-TCTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----HHHhccCC-CCchHHHHHHHHHHHHHHhhHHHHHHHHhH
Confidence 3445555678888866 66666665544433 44443321 235778888888888999988888887763
No 141
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=58.89 E-value=15 Score=24.68 Aligned_cols=29 Identities=10% Similarity=0.022 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 307 TDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 307 ~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
.+|..+...+..+|..|..++..|+.-|+
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~~ll~ 31 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNTKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 34555566667778888888888887765
No 142
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=58.40 E-value=70 Score=25.63 Aligned_cols=54 Identities=13% Similarity=0.236 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 275 RRSRRRKQAHLTELE----TQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 275 RRSR~RKka~leeLE----~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
+|-+.+-..|-..=. .+...|+.++..|..++..| ..||..+..++..+++++.
T Consensus 29 ~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L-------~~e~~~~~~e~d~~k~k~~ 86 (90)
T 2wt7_B 29 KRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQL-------KQEVSRLARERDAYKVKSE 86 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 455566666644433 23456666666666666555 5666666666666666653
No 143
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=58.04 E-value=41 Score=26.00 Aligned_cols=49 Identities=16% Similarity=0.260 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Q 019400 282 QAHLTELETQVSQLRVENSSLLKRLTDI------SQKYNEAAVDNRVLKADVETL 330 (341)
Q Consensus 282 ka~leeLE~qV~~L~~EN~~L~~rl~~L------~qk~~~l~~EN~~Lkaqle~L 330 (341)
|..++.|+.++..|+.+...|..++..- -.++..+..+-..|..+++.+
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~ 75 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQA 75 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4468889999999999888888887541 133444555555555555544
No 144
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=57.94 E-value=22 Score=43.75 Aligned_cols=49 Identities=14% Similarity=0.235 Sum_probs=39.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 019400 290 TQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMHSS 338 (341)
Q Consensus 290 ~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ma~ 338 (341)
.++...+.+-.+|..++..|+.+|..+..|-..|+.+++....||..|+
T Consensus 2028 ~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~ 2076 (3245)
T 3vkg_A 2028 LKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSI 2076 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666677788888888899999999999999999999988764
No 145
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=57.87 E-value=11 Score=25.77 Aligned_cols=30 Identities=13% Similarity=0.191 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019400 307 TDISQKYNEAAVDNRVLKADVETLRAKVMH 336 (341)
Q Consensus 307 ~~L~qk~~~l~~EN~~Lkaqle~LRakV~m 336 (341)
.+|..+...+..+|..|..++..|+.-|+-
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 344455555667777777888888776653
No 146
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=56.86 E-value=18 Score=23.88 Aligned_cols=28 Identities=21% Similarity=0.267 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 308 DISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 308 ~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
.|..+.+.+.+.|-.-++.++.||.+++
T Consensus 5 alkkrvqalkarnyaakqkvqalrhkcg 32 (33)
T 1fmh_B 5 ALKKRVQALKARNYAAKQKVQALRHKCG 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3444445556778888888888888765
No 147
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=56.24 E-value=69 Score=26.28 Aligned_cols=51 Identities=14% Similarity=0.260 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019400 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 284 ~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV 334 (341)
.+.++...+..|+.+-..++..+....+.|+.|..=--.|..+|.+-|.-|
T Consensus 76 ~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EIatYRkLL 126 (129)
T 3tnu_B 76 ALKDARNKLAELEEALQKAKQDMARLLREYQELMNTKLALDVEIATYRKLL 126 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344455556666666666666666666667766655556666666666543
No 148
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=56.24 E-value=29 Score=31.75 Aligned_cols=45 Identities=27% Similarity=0.319 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019400 286 TELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 286 eeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV 334 (341)
.=.|.|++.|+.+|..|..++..|. ....+|..+-.++..|.-+|
T Consensus 68 SL~erQ~~~LR~r~~~Le~~L~~Li----~~A~~Ne~l~~~~~~l~l~L 112 (252)
T 3e98_A 68 SLVERQVRLLRERNIEMRHRLSQLM----DVARENDRLFDKTRRLVLDL 112 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666666665553 33455666665555555444
No 149
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=55.46 E-value=75 Score=25.09 Aligned_cols=12 Identities=25% Similarity=0.462 Sum_probs=7.1
Q ss_pred HHHHHHHHHhhc
Q 019400 325 ADVETLRAKVMH 336 (341)
Q Consensus 325 aqle~LRakV~m 336 (341)
.++..|.+|+.+
T Consensus 86 ~evasLnRriql 97 (101)
T 3u59_A 86 AEVASLNRRIQL 97 (101)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 356666666654
No 150
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=55.23 E-value=26 Score=27.96 Aligned_cols=33 Identities=21% Similarity=0.218 Sum_probs=21.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 297 VENSSLLKRLTDISQKYNEAAVDNRVLKADVET 329 (341)
Q Consensus 297 ~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~ 329 (341)
.||..|..++..+..+...+..+|..|+.-.+.
T Consensus 38 ~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~ 70 (83)
T 1wlq_A 38 KENEKLHKEIEQKDSEIARLRKENKDLAEVAEH 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777766677777777766654443
No 151
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=55.08 E-value=80 Score=30.22 Aligned_cols=34 Identities=18% Similarity=0.100 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 302 LLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 302 L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
|.+++..-..+..+++.|=..|..+++.+++.|+
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 434 LDAEKAQGQKKVEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555566666666666666666654
No 152
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=55.03 E-value=78 Score=25.15 Aligned_cols=48 Identities=8% Similarity=0.211 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETL 330 (341)
Q Consensus 283 a~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~L 330 (341)
..+..++.+...|..+-..++...+.+.-+...+..+-..|..++..-
T Consensus 39 ~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~ 86 (96)
T 3q8t_A 39 ENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYA 86 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444433
No 153
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=54.39 E-value=68 Score=24.77 Aligned_cols=30 Identities=17% Similarity=0.279 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019400 288 LETQVSQLRVENSSLLKRLTDISQKYNEAA 317 (341)
Q Consensus 288 LE~qV~~L~~EN~~L~~rl~~L~qk~~~l~ 317 (341)
|...|..|..|+.+|..++..+.+.+..+.
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~~~~ 31 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLSRLK 31 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777766666655544
No 154
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=54.07 E-value=18 Score=23.61 Aligned_cols=27 Identities=22% Similarity=0.411 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 019400 286 TELETQVSQLRVENSSLLKRLTDISQK 312 (341)
Q Consensus 286 eeLE~qV~~L~~EN~~L~~rl~~L~qk 312 (341)
+.|..-+..|+.||.+|..++++|-.+
T Consensus 2 dqlnallasleaenkqlkakveellak 28 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEELLAK 28 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666778888888888888776433
No 155
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=53.73 E-value=74 Score=24.47 Aligned_cols=57 Identities=11% Similarity=0.177 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 279 RRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 279 ~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
.|-...+.++...+..|+.+-..++..+....+.|+.+..=--.|-.+|.+-|.-|-
T Consensus 22 ~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkLLE 78 (84)
T 1gk4_A 22 ENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLE 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 344556778888888888888889888888888999999777888899999887764
No 156
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=53.51 E-value=48 Score=26.29 Aligned_cols=41 Identities=24% Similarity=0.320 Sum_probs=24.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 295 LRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 295 L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
+..|-...+..+..+..++.+....|+.|..+++.|+.++.
T Consensus 29 i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~e 69 (81)
T 1wt6_A 29 LSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERME 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555556666666777777777777766654
No 157
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=52.50 E-value=33 Score=31.02 Aligned_cols=29 Identities=14% Similarity=0.157 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019400 285 LTELETQVSQLRVENSSLLKRLTDISQKY 313 (341)
Q Consensus 285 leeLE~qV~~L~~EN~~L~~rl~~L~qk~ 313 (341)
...|..+++....|+..|++++..++++.
T Consensus 29 n~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 29 NFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34444445555555555555555554443
No 158
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=52.35 E-value=24 Score=28.88 Aligned_cols=26 Identities=23% Similarity=0.211 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019400 284 HLTELETQVSQLRVENSSLLKRLTDI 309 (341)
Q Consensus 284 ~leeLE~qV~~L~~EN~~L~~rl~~L 309 (341)
.+..|..+++.|+.||..|++++..|
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~L 38 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRML 38 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555444
No 159
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=52.03 E-value=58 Score=27.79 Aligned_cols=55 Identities=18% Similarity=0.187 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHH-HhHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 019400 285 LTELETQVSQLRV-ENSSLLKRLTDIS--------QKYNEAAVDNRVLKADVETLRAKVMHSSI 339 (341)
Q Consensus 285 leeLE~qV~~L~~-EN~~L~~rl~~L~--------qk~~~l~~EN~~Lkaqle~LRakV~ma~~ 339 (341)
++.|+.+++.|.. +-.++.+++.... ..|+....+-..+..+|..|..+|..|.+
T Consensus 11 ~~~L~~EL~~L~~~~R~~i~~~i~~Ar~~GDlsENaeY~aak~~q~~~e~rI~~L~~~L~~A~v 74 (158)
T 2p4v_A 11 YEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCMENLKI 74 (158)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCEE
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhCee
Confidence 3455555555532 3444444444443 45667777888899999999999987765
No 160
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=50.66 E-value=1e+02 Score=25.28 Aligned_cols=48 Identities=17% Similarity=0.356 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHh
Q 019400 287 ELETQVSQLRVENSSLLKRLTDISQKYN-------EAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 287 eLE~qV~~L~~EN~~L~~rl~~L~qk~~-------~l~~EN~~Lkaqle~LRakV 334 (341)
+.+..+..|......|..++..+..++. .+..+-+.|..++..|+..+
T Consensus 66 e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~l 120 (129)
T 2fxo_A 66 DAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDI 120 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444433333 33344444444444444444
No 161
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=50.36 E-value=11 Score=24.17 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=11.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHH
Q 019400 294 QLRVENSSLLKRLTDISQKYN 314 (341)
Q Consensus 294 ~L~~EN~~L~~rl~~L~qk~~ 314 (341)
.|+.||..|.+++..|.|+..
T Consensus 4 alefendaleqkiaalkqkia 24 (28)
T 3ra3_A 4 ALEFENDALEQKIAALKQKIA 24 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhccHHHHHHHHHHHHHHH
Confidence 455555555555555554443
No 162
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=49.22 E-value=75 Score=25.98 Aligned_cols=10 Identities=20% Similarity=0.418 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 019400 321 RVLKADVETL 330 (341)
Q Consensus 321 ~~Lkaqle~L 330 (341)
..|+.++.-|
T Consensus 93 esL~eEl~FL 102 (119)
T 3ol1_A 93 ESLQEEIAFL 102 (119)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344444333
No 163
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=48.11 E-value=1e+02 Score=25.92 Aligned_cols=32 Identities=28% Similarity=0.405 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 019400 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEA 316 (341)
Q Consensus 285 leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l 316 (341)
..+|+.++..|+..|..|..++..+..++..+
T Consensus 52 ~~eL~~~~~~Le~~n~~L~~~lke~~~~~~~l 83 (155)
T 2oto_A 52 AEELEKAKQALEDQRKDLETKLKELQQDYDLA 83 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788888888888888888888887777554
No 164
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=48.04 E-value=40 Score=25.95 Aligned_cols=28 Identities=11% Similarity=0.164 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 308 DISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 308 ~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
.|+++...+..++..|+.+.+.|+++|.
T Consensus 51 ~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 51 KLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444455555666666666666654
No 165
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=48.00 E-value=39 Score=26.82 Aligned_cols=29 Identities=24% Similarity=0.399 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 019400 283 AHLTELETQVSQLRVENSSLLKRLTDISQ 311 (341)
Q Consensus 283 a~leeLE~qV~~L~~EN~~L~~rl~~L~q 311 (341)
+++.+.+.+...|+..|..|..++.+|+-
T Consensus 49 ~r~~e~e~r~k~le~~n~~l~~riqELE~ 77 (83)
T 4ath_A 49 QRAKDLENRQKKLEHANRHLLLRVQELEM 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 33444455555555555555555555543
No 166
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=47.16 E-value=1.2e+02 Score=24.86 Aligned_cols=29 Identities=14% Similarity=0.351 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019400 285 LTELETQVSQLRVENSSLLKRLTDISQKY 313 (341)
Q Consensus 285 leeLE~qV~~L~~EN~~L~~rl~~L~qk~ 313 (341)
+..|+.+++.|+..|..|...+.++.+++
T Consensus 45 iq~L~~el~~l~~~~~~LE~~l~e~e~~~ 73 (129)
T 3tnu_B 45 IQRLRAEIDNVKKQCANLQNAIADAEQRG 73 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34455555556666666666555555544
No 167
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=47.03 E-value=1.2e+02 Score=24.93 Aligned_cols=53 Identities=13% Similarity=0.197 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019400 282 QAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 282 ka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV 334 (341)
...+.++...+..|+.+-..++..+....+.|+.|..=--.|..+|.+-|.-|
T Consensus 76 ~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EIatYRkLL 128 (131)
T 3tnu_A 76 CMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIATYRRLL 128 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34455666677777777777777777777888888766667788888877665
No 168
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=46.51 E-value=29 Score=31.13 Aligned_cols=30 Identities=23% Similarity=0.418 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 019400 283 AHLTELETQVSQLRVENSSLLKRLTDISQK 312 (341)
Q Consensus 283 a~leeLE~qV~~L~~EN~~L~~rl~~L~qk 312 (341)
..+.+|+.++.+|+.+|..|+.+.+...++
T Consensus 152 d~~~~L~~~n~~LqkeNeRL~~E~n~~l~q 181 (184)
T 3w03_C 152 DTIAENQAKNEHLQKENERLLRDWNDVQGR 181 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666666655554443
No 169
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=46.31 E-value=83 Score=22.93 Aligned_cols=30 Identities=7% Similarity=0.170 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019400 305 RLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 305 rl~~L~qk~~~l~~EN~~Lkaqle~LRakV 334 (341)
.+..|..++..+..+|..|+.+|..|+..+
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~ 53 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEK 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666777777766666554
No 170
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=46.29 E-value=22 Score=27.63 Aligned_cols=45 Identities=18% Similarity=0.189 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 287 ELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLR 331 (341)
Q Consensus 287 eLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LR 331 (341)
+|..+...++.....|..=+.+...-...+..+|..||.+|..|.
T Consensus 19 el~~~L~~~~k~~~Hl~~LL~EsEatnarL~eq~~lLK~EIRRlE 63 (71)
T 3bbp_D 19 ELVQKLSSTTKSADHLNGLLRETEATNAILMEQIKLLKSEIRRLE 63 (71)
T ss_dssp ----------CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444445556677777887777764
No 171
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=46.22 E-value=95 Score=26.34 Aligned_cols=55 Identities=11% Similarity=0.316 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHH-HhHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 019400 285 LTELETQVSQLRV-ENSSLLKRLTDIS--------QKYNEAAVDNRVLKADVETLRAKVMHSSI 339 (341)
Q Consensus 285 leeLE~qV~~L~~-EN~~L~~rl~~L~--------qk~~~l~~EN~~Lkaqle~LRakV~ma~~ 339 (341)
++.|+.+++.|+. +-.++...+.... ..|+.+..+-+.+...+..|..+|..|.+
T Consensus 11 ~~~L~~El~~L~~~~rp~i~~~i~~A~~~gDlsENaeY~aak~~q~~~e~ri~~Le~~L~~a~v 74 (158)
T 1grj_A 11 AEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIKDIEAKLSNAQV 74 (158)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHTTCCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred HHHHHHHHHHHHhccchhhHhhHHHHHhcccccccchhhhHHHHHHHHHHHHHHHHHHHhhCee
Confidence 4455666666655 4444555554433 45677777778888899999999988764
No 172
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=45.94 E-value=97 Score=32.13 Aligned_cols=36 Identities=17% Similarity=0.211 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019400 301 SLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMH 336 (341)
Q Consensus 301 ~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~m 336 (341)
+|.+++..|+++.+.....=++|+.-|+.++.+++.
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQR 149 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKR 149 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666555554446666666666666553
No 173
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=45.92 E-value=33 Score=23.20 Aligned_cols=30 Identities=13% Similarity=0.120 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 306 LTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 306 l~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
+.+|..+...+..+|..|..++..|+.-|+
T Consensus 3 MnQledKvEel~~~~~~l~nEv~Rl~~lLg 32 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANELARVAKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 445556666667788888888888887664
No 174
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=45.80 E-value=85 Score=24.21 Aligned_cols=31 Identities=23% Similarity=0.394 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019400 287 ELETQVSQLRVENSSLLKRLTDISQKYNEAA 317 (341)
Q Consensus 287 eLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~ 317 (341)
+|...|..|..|+.+|..++..+.+.+..+.
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~ 33 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEK 33 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777788888888888888877777666554
No 175
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=45.74 E-value=0.44 Score=38.61 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Q 019400 260 DAKRVRRMLSNRESARRSRRRKQ 282 (341)
Q Consensus 260 e~KR~RRklsNRESARRSR~RKk 282 (341)
-.+..||.-+||.+|+++|+||.
T Consensus 64 lIrdiRRRgKNkvAAqnCRKRKl 86 (90)
T 2lz1_A 64 LIRDIRRRGKNKVAAQNCRKRKL 86 (90)
T ss_dssp HHHHHHHHSCSCCCCCCCSCCCC
T ss_pred HHHHHHHhhhhHHHHHHcchhhc
Confidence 46778899999999999999984
No 176
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=45.29 E-value=84 Score=27.62 Aligned_cols=11 Identities=27% Similarity=0.422 Sum_probs=6.6
Q ss_pred HHHHHHHHHHH
Q 019400 320 NRVLKADVETL 330 (341)
Q Consensus 320 N~~Lkaqle~L 330 (341)
|..|+.++..|
T Consensus 199 n~~L~~eLp~l 209 (251)
T 2fic_A 199 NVDLQEELPSL 209 (251)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56666666555
No 177
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=44.63 E-value=67 Score=27.55 Aligned_cols=50 Identities=20% Similarity=0.237 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019400 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 285 leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV 334 (341)
+..|...+.....+...|..++..-..+...++.++..+..+++.|.+.|
T Consensus 34 l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasL 83 (135)
T 2e7s_A 34 YNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 83 (135)
T ss_dssp HHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444556666666666666666666667777777777777776654
No 178
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=44.50 E-value=1.2e+02 Score=24.09 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019400 283 AHLTELETQVSQLRVENSSLLKRLTDI 309 (341)
Q Consensus 283 a~leeLE~qV~~L~~EN~~L~~rl~~L 309 (341)
+.+.+|.-+|..|+.|-.+...+|...
T Consensus 26 qEi~~Lr~kv~elEnErlQyEkKLKsT 52 (81)
T 3qh9_A 26 QELRHLKIKVEELENERNQYEWKLKAT 52 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 445566666666665555554444433
No 179
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=44.49 E-value=20 Score=25.63 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHH
Q 019400 283 AHLTELETQVSQLRVENSSLLKRL 306 (341)
Q Consensus 283 a~leeLE~qV~~L~~EN~~L~~rl 306 (341)
.|++.|+.++..|+.....|...+
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888887777666543
No 180
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=43.79 E-value=35 Score=23.08 Aligned_cols=22 Identities=14% Similarity=0.302 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHH
Q 019400 287 ELETQVSQLRVENSSLLKRLTD 308 (341)
Q Consensus 287 eLE~qV~~L~~EN~~L~~rl~~ 308 (341)
...+.+++|+.+|..|..++..
T Consensus 11 a~qqDIddlkrQN~~Le~Qir~ 32 (34)
T 1a93_B 11 THQQDIDDLKRQNALLEQQVRA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHHHHHHHHHHHHHHHHh
Confidence 4455666777777777666543
No 181
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=43.56 E-value=80 Score=24.60 Aligned_cols=9 Identities=44% Similarity=0.708 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 019400 323 LKADVETLR 331 (341)
Q Consensus 323 Lkaqle~LR 331 (341)
|..+++.|.
T Consensus 68 LE~kvesL~ 76 (86)
T 3swk_A 68 LERKVESLQ 76 (86)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 182
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=42.96 E-value=68 Score=23.89 Aligned_cols=24 Identities=13% Similarity=0.277 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Q 019400 286 TELETQVSQLRVENSSLLKRLTDI 309 (341)
Q Consensus 286 eeLE~qV~~L~~EN~~L~~rl~~L 309 (341)
..|-.+|++|+..+.+..+++..|
T Consensus 21 ~~L~~kv~~Le~~c~e~eQEieRL 44 (58)
T 3a2a_A 21 VQLAAKIQHLEFSCSEKEQEIERL 44 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777777776666655
No 183
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=42.80 E-value=91 Score=28.73 Aligned_cols=57 Identities=18% Similarity=0.230 Sum_probs=41.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 261 AKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVL 323 (341)
Q Consensus 261 ~KR~RRklsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~L 323 (341)
....|+-+..|-.+=+ +.+..|+.++++.+.|++.+..++...+++..++......+
T Consensus 162 de~Ik~yLa~R~~~lK------~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~ 218 (228)
T 3q0x_A 162 DSVVKQFLAFRLSEVK------GTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKH 218 (228)
T ss_dssp HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4445666666555433 35688999999999999999999999888877766555444
No 184
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=42.53 E-value=64 Score=31.48 Aligned_cols=34 Identities=15% Similarity=0.325 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019400 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAA 317 (341)
Q Consensus 284 ~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~ 317 (341)
.++.|+.++..|+.+..+|..++..++.++..+.
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 37 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELN 37 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666665554444443
No 185
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=42.24 E-value=96 Score=22.48 Aligned_cols=31 Identities=0% Similarity=-0.019 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 019400 284 HLTELETQVSQLRVENSSLLKRLTDISQKYN 314 (341)
Q Consensus 284 ~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~ 314 (341)
.++.|..+|.+|..+-..|...+..++....
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~~v~ 35 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARSDAQ 35 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666655555555555544433
No 186
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=41.73 E-value=70 Score=28.89 Aligned_cols=14 Identities=21% Similarity=0.306 Sum_probs=8.8
Q ss_pred CChHHHHHHHHHHH
Q 019400 140 QNLEDYQAVLKSKL 153 (341)
Q Consensus 140 ~dp~~y~a~Lk~kL 153 (341)
+..++|-+.||.=|
T Consensus 61 ~~~eey~~~l~~aL 74 (213)
T 1ik9_A 61 MEKGKYVGELRKAL 74 (213)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 35567877776543
No 187
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=41.53 E-value=1.2e+02 Score=25.56 Aligned_cols=44 Identities=11% Similarity=0.190 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 288 LETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLR 331 (341)
Q Consensus 288 LE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LR 331 (341)
|..+...|..+...+......|..++..+...|..|+..+..++
T Consensus 34 Lk~e~e~l~~~~~~~~~~~~eL~~~~~~Le~~n~~L~~~lke~~ 77 (155)
T 2oto_A 34 LKARLENAMEVAGRDFKRAEELEKAKQALEDQRKDLETKLKELQ 77 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333334444445555555555555555554
No 188
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=41.49 E-value=75 Score=29.27 Aligned_cols=35 Identities=14% Similarity=0.209 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 301 SLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 301 ~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
.+++++..++++......|+..+.++++..|+.+.
T Consensus 175 ~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~ 209 (228)
T 3q0x_A 175 EVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLA 209 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444555566666666666665543
No 189
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=39.96 E-value=37 Score=26.34 Aligned_cols=34 Identities=6% Similarity=0.122 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 299 NSSLLKRLTDISQKYNEAAVDNRVLKADVETLRA 332 (341)
Q Consensus 299 N~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRa 332 (341)
.......+..+..+..+...+.+.|+.++..+|.
T Consensus 35 Lr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 35 LRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3334444555556666667777777777776654
No 190
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=39.41 E-value=33 Score=21.86 Aligned_cols=21 Identities=19% Similarity=0.422 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 019400 315 EAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 315 ~l~~EN~~Lkaqle~LRakV~ 335 (341)
.++-||..|.+.+..|.+++.
T Consensus 4 alefendaleqkiaalkqkia 24 (28)
T 3ra3_A 4 ALEFENDALEQKIAALKQKIA 24 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhccHHHHHHHHHHHHHHH
Confidence 467889999999999988864
No 191
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=39.17 E-value=1.9e+02 Score=25.05 Aligned_cols=58 Identities=19% Similarity=0.308 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 273 SARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETL 330 (341)
Q Consensus 273 SARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~L 330 (341)
-|-|+=.+-+..++.||.++..-+..+..+...+...-..+..+...|..|.-+|..|
T Consensus 95 ~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~~ 152 (155)
T 2efr_A 95 FAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARL 152 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 4555555666666666666666666666666666665555566666666666666555
No 192
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=39.09 E-value=1.2e+02 Score=25.43 Aligned_cols=48 Identities=15% Similarity=0.254 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019400 279 RRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMH 336 (341)
Q Consensus 279 ~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~m 336 (341)
.+|++-..++|.++++++.+...+.+.+ +.+-..-+.+++.++.+|-|
T Consensus 57 ~kklqLkse~e~E~ae~k~KYD~~lqe~----------ese~~~kkK~le~~~~kV~m 104 (115)
T 3vem_A 57 EKKSILKAELERKMAEVQAEFRRKFHEV----------EAEHNTRTTKIEKDKNLVIM 104 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
Confidence 4577777788888887777766665544 34444556667777777765
No 193
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=39.03 E-value=1.3e+02 Score=22.96 Aligned_cols=26 Identities=23% Similarity=0.193 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHH
Q 019400 282 QAHLTELETQVSQLRVENSSLLKRLT 307 (341)
Q Consensus 282 ka~leeLE~qV~~L~~EN~~L~~rl~ 307 (341)
-.|+..|+.++..|+.++..|..++.
T Consensus 49 i~YI~~Lq~~~~~L~~e~~~L~~~~~ 74 (82)
T 1am9_A 49 IDYIRFLQHSNQKLKQENLSLRTAVH 74 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666665544
No 194
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=38.87 E-value=42 Score=31.75 Aligned_cols=48 Identities=15% Similarity=0.264 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhc
Q 019400 289 ETQVSQLRVENSSLLKRLTDISQKYNEAAVDN----RVLKADVETLRAKVMH 336 (341)
Q Consensus 289 E~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN----~~Lkaqle~LRakV~m 336 (341)
+.+++.|+.+|+.|.++++.|+++...+...| ..|+..+.-.+.+|++
T Consensus 184 ~~eie~L~~~~~~L~eEi~~Le~~~e~~~k~n~~rl~~Lqk~~~~~~~~LGl 235 (315)
T 2ve7_A 184 AFKLESLEAKNRALNEQIARLEQERSTANKANAERLKRLQKSADLYKDRLGL 235 (315)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHcce
Confidence 44556666666666666666655544444333 3345555555555553
No 195
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=38.81 E-value=1.7e+02 Score=24.31 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019400 275 RRSRRRKQAHLTELETQVSQLR 296 (341)
Q Consensus 275 RRSR~RKka~leeLE~qV~~L~ 296 (341)
++.-..=+.++..|+.++..-+
T Consensus 39 q~~v~ql~~~i~~Le~eL~e~r 60 (120)
T 3i00_A 39 QRVVLQLKGHVSELEADLAEQQ 60 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344455555554443
No 196
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=38.51 E-value=1e+02 Score=21.70 Aligned_cols=50 Identities=20% Similarity=0.176 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019400 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 285 leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV 334 (341)
+..|+..+..+..+-..+..++..+..++..+..+=...+..|..|...+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 7 KKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666666666666666666666665544
No 197
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=37.90 E-value=1.1e+02 Score=31.86 Aligned_cols=42 Identities=14% Similarity=0.298 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 286 TELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADV 327 (341)
Q Consensus 286 eeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaql 327 (341)
++|+.++..|+.+...-..+|..|+.-+..+..+=..|..+|
T Consensus 113 ~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 113 EDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444433333444444444444444444444333
No 198
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=37.26 E-value=1.7e+02 Score=23.95 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 019400 286 TELETQVSQLRVENSSLLKRLTDISQK 312 (341)
Q Consensus 286 eeLE~qV~~L~~EN~~L~~rl~~L~qk 312 (341)
..|+.+++.|+..+..|...+.++.++
T Consensus 48 q~L~~el~~l~~~~~sLE~~l~e~e~~ 74 (131)
T 3tnu_A 48 QNLEIELQSQLSMKASLENSLEETKGR 74 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 199
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=37.06 E-value=2.2e+02 Score=35.35 Aligned_cols=68 Identities=12% Similarity=0.242 Sum_probs=37.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
Q 019400 266 RMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQK--------------YNEAAVDNRVLKADVETLR 331 (341)
Q Consensus 266 RklsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk--------------~~~l~~EN~~Lkaqle~LR 331 (341)
...++-+.|+..-..+++.+.+|+.+++.|+.+-+.+..+.+.|+.+ ...|..|+.+=.+++..|.
T Consensus 2018 ~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~ 2097 (3245)
T 3vkg_A 2018 QLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFN 2097 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHH
Confidence 44555555666666667777777777777766655443333333322 2234455555555555554
Q ss_pred HH
Q 019400 332 AK 333 (341)
Q Consensus 332 ak 333 (341)
.+
T Consensus 2098 ~~ 2099 (3245)
T 3vkg_A 2098 TQ 2099 (3245)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 200
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=36.84 E-value=23 Score=29.67 Aligned_cols=28 Identities=14% Similarity=0.121 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 019400 287 ELETQVSQLRVENSSLLKRLTDISQKYN 314 (341)
Q Consensus 287 eLE~qV~~L~~EN~~L~~rl~~L~qk~~ 314 (341)
+|..+|+.|..++..|.+++..+++++.
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~a 56 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVIA 56 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555554433
No 201
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=36.76 E-value=42 Score=25.37 Aligned_cols=59 Identities=19% Similarity=0.275 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 275 RRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAK 333 (341)
Q Consensus 275 RRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRak 333 (341)
|+.|.+=...+..|..-|-.+...-..=..-|.........|..++..|+.+++.|+..
T Consensus 21 r~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 21 RKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33333335566777766665431111111122223344556677777777777777653
No 202
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=36.73 E-value=1.2e+02 Score=27.82 Aligned_cols=40 Identities=23% Similarity=0.359 Sum_probs=28.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 292 VSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLR 331 (341)
Q Consensus 292 V~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LR 331 (341)
+++|+.+--.......+|+.....+.+||..|+..+..|+
T Consensus 32 ~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLe 71 (206)
T 3oa7_A 32 LQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLE 71 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 3455555556666666777777777888888888888775
No 203
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=36.34 E-value=1.3e+02 Score=22.24 Aligned_cols=36 Identities=6% Similarity=0.078 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 019400 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDN 320 (341)
Q Consensus 285 leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN 320 (341)
+++|...+..-..+-...+.++.+++..++.|..|-
T Consensus 37 ~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el 72 (77)
T 3trt_A 37 FADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEV 72 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555444444444445555544444444443
No 204
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=36.08 E-value=67 Score=26.72 Aligned_cols=35 Identities=23% Similarity=0.348 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019400 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAA 317 (341)
Q Consensus 283 a~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~ 317 (341)
..+.+|+.+|+.++..|+.|++-...-.+.+.++.
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF~~ks~eFReav 38 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVFQTKIQEFRKAC 38 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888888877776666665543
No 205
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=35.79 E-value=1.1e+02 Score=25.80 Aligned_cols=27 Identities=15% Similarity=0.283 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCC
Q 019400 313 YNEAAVDNRVLKADVETLRAKVMHSSI 339 (341)
Q Consensus 313 ~~~l~~EN~~Lkaqle~LRakV~ma~~ 339 (341)
|+.+..+-..|..++..|..+|..|.+
T Consensus 48 y~aak~~q~~~e~ri~~L~~~L~~a~v 74 (156)
T 2f23_A 48 LEAAKQEKARIEARIDSLEDILSRAVI 74 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 566666777788888999988887765
No 206
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=34.95 E-value=87 Score=23.85 Aligned_cols=47 Identities=11% Similarity=0.102 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVET 329 (341)
Q Consensus 283 a~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~ 329 (341)
.+.+++..++..|+.|-.-...+|..+.--++....++..|...|..
T Consensus 16 ~Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~~e~e~~~l~~~I~~ 62 (75)
T 3mtu_A 16 LDKENALDRAEQAEADKDFYFGKLRNIELICQENEGENDPVLQRIVD 62 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 45677777888888888888888888877777776666655555543
No 207
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=34.38 E-value=1.3e+02 Score=21.56 Aligned_cols=11 Identities=27% Similarity=0.585 Sum_probs=4.3
Q ss_pred HHHHHHHhHHH
Q 019400 292 VSQLRVENSSL 302 (341)
Q Consensus 292 V~~L~~EN~~L 302 (341)
+..|+..|-+|
T Consensus 12 iarlkkdnlql 22 (52)
T 3he5_B 12 IARLKKDNLQL 22 (52)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHhhhhhhh
Confidence 33444444333
No 208
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=33.28 E-value=63 Score=31.84 Aligned_cols=18 Identities=17% Similarity=0.285 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHhHHHHHH
Q 019400 288 LETQVSQLRVENSSLLKR 305 (341)
Q Consensus 288 LE~qV~~L~~EN~~L~~r 305 (341)
|+.+.+.|+.++..|..+
T Consensus 54 le~~~~~L~~e~e~l~~~ 71 (428)
T 4b4t_K 54 LEKEYELLTLQEDYIKDE 71 (428)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444433333
No 209
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=33.13 E-value=36 Score=25.78 Aligned_cols=21 Identities=5% Similarity=0.017 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHH
Q 019400 283 AHLTELETQVSQLRVENSSLL 303 (341)
Q Consensus 283 a~leeLE~qV~~L~~EN~~L~ 303 (341)
.|+..|+.++..|+.++..|.
T Consensus 57 ~YI~~L~~~~~~L~~e~~~L~ 77 (80)
T 1hlo_A 57 EYIQYMRRKNHTHQQDIDDLK 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555544444443
No 210
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=33.01 E-value=1.8e+02 Score=23.03 Aligned_cols=53 Identities=8% Similarity=0.102 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 283 a~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
..+..+...+..|+.+-..++..+....+.|+.+..---.|..+|.+.|.-|.
T Consensus 37 ~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatYrkLLE 89 (95)
T 3mov_A 37 KEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAYRKLLE 89 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34455666666677777777777777777788888666778888888887764
No 211
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=32.42 E-value=1.7e+02 Score=22.59 Aligned_cols=50 Identities=18% Similarity=0.167 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 286 TELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 286 eeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
...+.....|+..+..|..+...|..++..+..-...|.+.-..|..+|+
T Consensus 31 ~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~ 80 (89)
T 3bas_A 31 AKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVA 80 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566666666666666665555555555555555555555543
No 212
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=32.34 E-value=1.5e+02 Score=28.37 Aligned_cols=6 Identities=17% Similarity=0.401 Sum_probs=2.2
Q ss_pred HHHHHH
Q 019400 327 VETLRA 332 (341)
Q Consensus 327 le~LRa 332 (341)
|..|..
T Consensus 49 i~~l~~ 54 (323)
T 1lwu_C 49 LVDIRQ 54 (323)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 213
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=31.58 E-value=1.5e+02 Score=21.49 Aligned_cols=27 Identities=15% Similarity=0.129 Sum_probs=11.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019400 291 QVSQLRVENSSLLKRLTDISQKYNEAA 317 (341)
Q Consensus 291 qV~~L~~EN~~L~~rl~~L~qk~~~l~ 317 (341)
++.+|..+-+.|..++..|......+.
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~ 31 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAAR 31 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333333
No 214
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=31.29 E-value=3.8e+02 Score=27.73 Aligned_cols=15 Identities=13% Similarity=0.333 Sum_probs=7.8
Q ss_pred cccCCChhHHHHHHH
Q 019400 252 TTENMDPVDAKRVRR 266 (341)
Q Consensus 252 ~~~~~d~~e~KR~RR 266 (341)
++.-+++.+.|++.+
T Consensus 287 vs~ilt~~elkqrqe 301 (551)
T 2b5u_A 287 VSDVLSPDQVKQRQD 301 (551)
T ss_dssp EEECCCHHHHHHHHH
T ss_pred EeecCCHHHHHHHHH
Confidence 344566666655443
No 215
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=31.15 E-value=1.3e+02 Score=24.56 Aligned_cols=61 Identities=21% Similarity=0.256 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHH------H-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019400 277 SRRRKQAHLTELE------T-QVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMHS 337 (341)
Q Consensus 277 SR~RKka~leeLE------~-qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ma 337 (341)
-|..|+.+|.+-- . ..++|+..-.+|..++..|..+-=.++..-..-.-+|..|+.+|...
T Consensus 22 e~EeKkkiLaER~~pL~id~l~~~~L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 22 ARETKKKVLAERRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp HHHHHHHHHHHTCCCCCCSSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHh
Confidence 3445666666411 0 12356666667777777777665555555555667888998888753
No 216
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=31.07 E-value=1.7e+02 Score=23.06 Aligned_cols=43 Identities=14% Similarity=0.169 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019400 281 KQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 281 Kka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV 334 (341)
-..|+..|..++..+..+.. +...+...|+.|.-.+++|....
T Consensus 37 svdYI~~Lq~e~~r~~e~e~-----------r~k~le~~n~~l~~riqELE~qa 79 (83)
T 4ath_A 37 SVDYIRKLQREQQRAKDLEN-----------RQKKLEHANRHLLLRVQELEMQA 79 (83)
T ss_dssp HHHHHHHHHHTHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------HHHHhhhhhHHHHHHHHHHHHHH
Confidence 35788888777666555433 33456788999998888886543
No 217
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=30.81 E-value=2.4e+02 Score=24.66 Aligned_cols=10 Identities=30% Similarity=0.301 Sum_probs=0.0
Q ss_pred HHhHHHHHHH
Q 019400 152 KLNLACAAVA 161 (341)
Q Consensus 152 kL~~~caAva 161 (341)
||=++.+|++
T Consensus 30 k~~la~~al~ 39 (175)
T 3lay_A 30 KSAIALIALS 39 (175)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 4434444443
No 218
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=30.25 E-value=1.1e+02 Score=20.17 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Q 019400 287 ELETQVSQLRVENSSLLKRLTDISQ 311 (341)
Q Consensus 287 eLE~qV~~L~~EN~~L~~rl~~L~q 311 (341)
.||+.+..|..--++|.+++..|..
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777777776644
No 219
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=30.22 E-value=28 Score=32.00 Aligned_cols=38 Identities=13% Similarity=0.170 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 019400 301 SLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMHSS 338 (341)
Q Consensus 301 ~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ma~ 338 (341)
++..+.+.+.++...+..||..|+++++.|++++...+
T Consensus 145 e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~ 182 (250)
T 2ve7_C 145 EFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDT 182 (250)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHSCC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34444444555555666778888888888877766443
No 220
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=30.20 E-value=1.6e+02 Score=21.63 Aligned_cols=21 Identities=19% Similarity=0.340 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 019400 314 NEAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 314 ~~l~~EN~~Lkaqle~LRakV 334 (341)
.....|-..|+-.++.|+..|
T Consensus 52 ~~~k~Ei~elrr~iq~L~~el 72 (77)
T 3trt_A 52 RQAKQESTEYRRQVQSLTMEV 72 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555443
No 221
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=30.10 E-value=2.4e+02 Score=23.45 Aligned_cols=47 Identities=9% Similarity=0.065 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVET 329 (341)
Q Consensus 283 a~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~ 329 (341)
+.+.-|+.||.-++..-..=+.--+.+..+...+..+.+.|+.++..
T Consensus 62 E~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~ 108 (110)
T 2v4h_A 62 ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNK 108 (110)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 47778888888777654433333344445555555566666665544
No 222
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=30.01 E-value=20 Score=29.47 Aligned_cols=23 Identities=22% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 019400 313 YNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 313 ~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
...+..+|..|...+++|.....
T Consensus 93 ~~~l~~~n~~L~~riqeLE~~a~ 115 (118)
T 4ati_A 93 QKKLEHANRHLLLRVQELEMQAR 115 (118)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888888888866443
No 223
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=29.64 E-value=2.3e+02 Score=23.12 Aligned_cols=45 Identities=16% Similarity=0.262 Sum_probs=30.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019400 293 SQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMHS 337 (341)
Q Consensus 293 ~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ma 337 (341)
+.|+..-.+|..++..|...-=.++..-..-.-+|..|+.+|...
T Consensus 45 ~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (106)
T 1j1d_B 45 DQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRINDN 89 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHh
Confidence 356666667777777777665555555555567888888888753
No 224
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=29.43 E-value=1.4e+02 Score=24.75 Aligned_cols=28 Identities=14% Similarity=0.230 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 301 SLLKRLTDISQKYNEAAVDNRVLKADVE 328 (341)
Q Consensus 301 ~L~~rl~~L~qk~~~l~~EN~~Lkaqle 328 (341)
+|..++..|.+++..+..+...|+.++.
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~a 56 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVIA 56 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555544444444444444444433
No 225
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=28.82 E-value=1.3e+02 Score=19.83 Aligned_cols=19 Identities=21% Similarity=0.364 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHhHHHHHHH
Q 019400 288 LETQVSQLRVENSSLLKRL 306 (341)
Q Consensus 288 LE~qV~~L~~EN~~L~~rl 306 (341)
|.+++..|+.|...|.-++
T Consensus 7 lkqeiaalkkeiaalkfei 25 (33)
T 4dzn_A 7 LKQEIAALKKEIAALKFEI 25 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 226
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=28.75 E-value=30 Score=24.91 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHH
Q 019400 282 QAHLTELETQVSQLRVENSSL 302 (341)
Q Consensus 282 ka~leeLE~qV~~L~~EN~~L 302 (341)
..|++.||.+|..|+.....|
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 378888888888887655443
No 227
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=28.64 E-value=2.7e+02 Score=24.98 Aligned_cols=17 Identities=12% Similarity=0.141 Sum_probs=6.3
Q ss_pred HHHHHHHHHHhHHHHHH
Q 019400 289 ETQVSQLRVENSSLLKR 305 (341)
Q Consensus 289 E~qV~~L~~EN~~L~~r 305 (341)
..++..|+.++..|..+
T Consensus 145 ~~e~~~l~~~~~~l~~q 161 (213)
T 1ik9_A 145 QKENERLLRDWNDVQGR 161 (213)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 228
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=28.41 E-value=1.8e+02 Score=21.39 Aligned_cols=52 Identities=15% Similarity=0.162 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019400 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 283 a~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV 334 (341)
.-+.+||.++..++.--..+...+..+.-.......++..=+..++.|..||
T Consensus 6 ~~~~~le~kl~~lEnIv~~l~~eve~~~~~lea~~rq~~~d~~~Ie~Le~kv 57 (65)
T 3m0d_C 6 KLLAELEGKLRVFENIVAVLNKEVEASHLALATSIHQSQLDRERILSLEQRV 57 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3455566666655544343333333333333323233322244455555554
No 229
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=28.14 E-value=1.4e+02 Score=26.12 Aligned_cols=44 Identities=23% Similarity=0.308 Sum_probs=0.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 019400 265 RRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQK 312 (341)
Q Consensus 265 RRklsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk 312 (341)
+++..-|.-.+.+-++|++||.+|..|...++ .|..|...+.++
T Consensus 8 ~~Le~Ek~~~~~rI~~K~~~LqeL~~Q~vafk----nLv~RN~~~e~~ 51 (155)
T 2aze_A 8 QNLEVERQRRLERIKQKQSQLQELILQQIAFK----NLVQRNRHAEQQ 51 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhc
No 230
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=28.07 E-value=1.7e+02 Score=21.08 Aligned_cols=19 Identities=21% Similarity=0.310 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHhHHHHHHH
Q 019400 288 LETQVSQLRVENSSLLKRL 306 (341)
Q Consensus 288 LE~qV~~L~~EN~~L~~rl 306 (341)
|-.+|..|+....++.+++
T Consensus 16 L~~kv~~Le~~c~~~eQEi 34 (48)
T 3vmx_A 16 LATKIQHLEFSCSEKEQEI 34 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHH
Confidence 3334444443333333333
No 231
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=28.01 E-value=2.2e+02 Score=22.46 Aligned_cols=41 Identities=12% Similarity=0.158 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKA 325 (341)
Q Consensus 285 leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lka 325 (341)
+++||.+-.+.+..-..-..++..|++++..-.+|=+.|+.
T Consensus 35 v~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~ 75 (81)
T 3qh9_A 35 VEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHS 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 44555555554444444444555555444444444433333
No 232
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=27.72 E-value=2.5e+02 Score=22.85 Aligned_cols=47 Identities=26% Similarity=0.333 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019400 271 RESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAA 317 (341)
Q Consensus 271 RESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~ 317 (341)
-|+-+-||.-=-.+.++|+.-...|+.+|..=.+++.+++.++....
T Consensus 13 Le~EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~L 59 (101)
T 1d7m_A 13 LESEKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDETL 59 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566555555578888888888888888888877776665543
No 233
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=27.40 E-value=1.7e+02 Score=29.96 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 019400 286 TELETQVSQLRVENSSLLKRLTDISQKYN 314 (341)
Q Consensus 286 eeLE~qV~~L~~EN~~L~~rl~~L~qk~~ 314 (341)
.++..+-..++.||..++++......+|.
T Consensus 37 ae~~a~n~~i~aeNeaikkrNa~aka~Ye 65 (497)
T 3iox_A 37 AANNAANAALTAENTAIKKRNADAKADYE 65 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444333
No 234
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=27.22 E-value=5.2e+02 Score=26.45 Aligned_cols=16 Identities=25% Similarity=0.671 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 019400 318 VDNRVLKADVETLRAK 333 (341)
Q Consensus 318 ~EN~~Lkaqle~LRak 333 (341)
.+...|+.||..|+.+
T Consensus 567 ~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 567 KESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4556777777777765
No 235
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=26.81 E-value=2.7e+02 Score=22.97 Aligned_cols=72 Identities=13% Similarity=0.196 Sum_probs=36.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019400 265 RRMLSNRESARRSRRRKQAHLTELE---TQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMH 336 (341)
Q Consensus 265 RRklsNRESARRSR~RKka~leeLE---~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~m 336 (341)
+|.-+|+.+-+.--.+=.+....|+ .+....+.+..+-.+++..+.-+..++...|..|.-++..|...+++
T Consensus 34 ~ri~~NtqaI~~NS~aiaanTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~kkl~~~ 108 (114)
T 2xzr_A 34 GRVTRNTQSIEKNSKAIAANTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIKKLIKL 108 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHhchHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4666677766532222221222221 22222222223333444455556667777788888888877766553
No 236
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=26.79 E-value=2.3e+02 Score=22.14 Aligned_cols=46 Identities=15% Similarity=0.216 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETL 330 (341)
Q Consensus 285 leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~L 330 (341)
+..|+.+++.-+.+-..+..++..+.+.+...-.|=..|+..+..|
T Consensus 29 v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL 74 (79)
T 3cvf_A 29 LRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARL 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 4444444444444444455555555555544444444455444443
No 237
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=26.42 E-value=1.4e+02 Score=26.72 Aligned_cols=32 Identities=13% Similarity=0.170 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 019400 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYN 314 (341)
Q Consensus 283 a~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~ 314 (341)
++++.+=..+..|+.+|..|.+++..|+++..
T Consensus 145 elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n 176 (184)
T 3w03_C 145 ELICYCLDTIAENQAKNEHLQKENERLLRDWN 176 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888888888888887766555554433
No 238
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=26.21 E-value=4.3e+02 Score=25.10 Aligned_cols=11 Identities=27% Similarity=0.175 Sum_probs=7.2
Q ss_pred CChHHHHHHHH
Q 019400 140 QNLEDYQAVLK 150 (341)
Q Consensus 140 ~dp~~y~a~Lk 150 (341)
-+++.=..|||
T Consensus 285 k~~eaA~~Fi~ 295 (471)
T 3mq9_A 285 PNKELAKEFLE 295 (471)
T ss_dssp SCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 36666667776
No 239
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=25.61 E-value=42 Score=27.59 Aligned_cols=18 Identities=17% Similarity=0.130 Sum_probs=0.4
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 019400 318 VDNRVLKADVETLRAKVM 335 (341)
Q Consensus 318 ~EN~~Lkaqle~LRakV~ 335 (341)
.+++.|......|..++.
T Consensus 91 ~~~~~l~~~n~~L~~riq 108 (118)
T 4ati_A 91 NRQKKLEHANRHLLLRVQ 108 (118)
T ss_dssp C-----------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334445555555554443
No 240
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=25.48 E-value=1.5e+02 Score=19.51 Aligned_cols=29 Identities=17% Similarity=0.359 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019400 285 LTELETQVSQLRVENSSLLKRLTDISQKY 313 (341)
Q Consensus 285 leeLE~qV~~L~~EN~~L~~rl~~L~qk~ 313 (341)
+..|..+|..|+..|-.-.++++.|+.+|
T Consensus 3 vqalkkrvqalkarnyaakqkvqalrhkc 31 (33)
T 1fmh_B 3 VQALKKRVQALKARNYAAKQKVQALRHKC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34566677777777766666666665554
No 241
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=25.26 E-value=1.3e+02 Score=22.83 Aligned_cols=30 Identities=27% Similarity=0.365 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019400 280 RKQAHLTELETQVSQLRVENSSLLKRLTDI 309 (341)
Q Consensus 280 RKka~leeLE~qV~~L~~EN~~L~~rl~~L 309 (341)
.|...+.+||..+..-..++.+|+.++..+
T Consensus 22 ~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~ 51 (67)
T 1zxa_A 22 LKEERIKELEKRLSEKEEEIQELKRKLHKC 51 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778888888777777777777666544
No 242
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=25.10 E-value=5.4e+02 Score=25.88 Aligned_cols=12 Identities=25% Similarity=0.451 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHh
Q 019400 323 LKADVETLRAKV 334 (341)
Q Consensus 323 Lkaqle~LRakV 334 (341)
|++++..|+.++
T Consensus 121 l~~~~~~l~~~i 132 (501)
T 1wle_A 121 LRARGREIRKQL 132 (501)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 243
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=24.93 E-value=2.9e+02 Score=25.45 Aligned_cols=28 Identities=7% Similarity=0.139 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 019400 285 LTELETQVSQLRVENSSLLKRLTDISQK 312 (341)
Q Consensus 285 leeLE~qV~~L~~EN~~L~~rl~~L~qk 312 (341)
+.+|+.+++.|+.+...+..++..+..+
T Consensus 228 l~~l~~~i~~l~~~l~~~~~~l~~~~~~ 255 (357)
T 3rrk_A 228 AARMKERARLAPEELVGIREEVARLSRE 255 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443
No 244
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=24.57 E-value=1.3e+02 Score=19.58 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Q 019400 286 TELETQVSQLRVENSSLLKRLTDI 309 (341)
Q Consensus 286 eeLE~qV~~L~~EN~~L~~rl~~L 309 (341)
+.||.+...|+..-+.|.++++.|
T Consensus 4 ealekkcaalesklqalekkleal 27 (31)
T 3ljm_A 4 EALEKKCAALESKLQALEKKLEAL 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667766666666666665554
No 245
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=24.26 E-value=3.2e+02 Score=22.93 Aligned_cols=50 Identities=10% Similarity=0.173 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019400 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 285 leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV 334 (341)
+..||.+...|..+-..-..+.....+.......+.+.|+.++.+.-.++
T Consensus 11 l~~LEaeyq~L~~kE~qrynqeka~AE~A~~~L~~~~~m~~~i~ek~~~i 60 (119)
T 2avr_X 11 LQALDAEYQNLANQEEARFNEERAQADAARQALAQNEQVYNELSQRAQRL 60 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444433222222222222333333344444444444444443
No 246
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=24.19 E-value=41 Score=28.04 Aligned_cols=22 Identities=18% Similarity=0.433 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019400 307 TDISQKYNEAAVDNRVLKADVE 328 (341)
Q Consensus 307 ~~L~qk~~~l~~EN~~Lkaqle 328 (341)
++|..++..|..||..||.++.
T Consensus 11 EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 11 EEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555666788888887764
No 247
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=24.18 E-value=35 Score=29.21 Aligned_cols=19 Identities=16% Similarity=0.179 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 019400 318 VDNRVLKADVETLRAKVMH 336 (341)
Q Consensus 318 ~EN~~Lkaqle~LRakV~m 336 (341)
..|..|+-+++.+++.|+|
T Consensus 55 ~~~d~L~lQ~esmeaalkm 73 (130)
T 3cl3_D 55 VQVDQLRMQGQSVEAALRM 73 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 248
>1tu3_F RAB GTPase binding effector protein 1; rabaptin5, effector-binding, protein transport; HET: GNP; 2.31A {Homo sapiens} SCOP: h.1.27.2
Probab=22.68 E-value=1.3e+02 Score=23.61 Aligned_cols=45 Identities=16% Similarity=0.158 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 288 LETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRA 332 (341)
Q Consensus 288 LE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRa 332 (341)
|+..+..|+..-..|..+|.....=-.....=-..|..+++.+|+
T Consensus 10 Le~~~~e~k~kv~~LQ~eLdtsE~VQrDFVkLSQsLQvqLE~IRq 54 (79)
T 1tu3_F 10 VEQLMFEEKNKAQRLQTELDVSEQVQRDFVKLSQTLQVQLERIRQ 54 (79)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444555555555555544332222333333477777777764
No 249
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.65 E-value=1.5e+02 Score=29.07 Aligned_cols=46 Identities=11% Similarity=0.148 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 286 TELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLR 331 (341)
Q Consensus 286 eeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LR 331 (341)
.+|..++..|+.+...|..+...++.+...+..|-..++.++..|+
T Consensus 45 ~dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~ 90 (428)
T 4b4t_K 45 SDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQ 90 (428)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4566666777776666666655555544444444444454444443
No 250
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=22.41 E-value=3.3e+02 Score=26.88 Aligned_cols=53 Identities=21% Similarity=0.312 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 278 RRRKQAHLTELETQVSQLRVENS----------SLLKRLTDISQKYNEAAVDNRVLKADVETL 330 (341)
Q Consensus 278 R~RKka~leeLE~qV~~L~~EN~----------~L~~rl~~L~qk~~~l~~EN~~Lkaqle~L 330 (341)
|+.-+..+++|+.+.+.+..+.. .|..+...+.++...++.+-..+.+++..+
T Consensus 40 ~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (455)
T 2dq0_A 40 WRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYY 102 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 251
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=22.34 E-value=68 Score=32.71 Aligned_cols=49 Identities=18% Similarity=0.171 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAK 333 (341)
Q Consensus 285 leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRak 333 (341)
..+|+.++.+++.+.......|....+....|..+-+....+.+.|..+
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~ 385 (575)
T 2i1j_A 337 QQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQR 385 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777766666665555555555555555554444443
No 252
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=22.20 E-value=6.1e+02 Score=25.51 Aligned_cols=6 Identities=17% Similarity=0.235 Sum_probs=2.2
Q ss_pred HHHHHH
Q 019400 286 TELETQ 291 (341)
Q Consensus 286 eeLE~q 291 (341)
++|..+
T Consensus 50 ~~l~~~ 55 (485)
T 3qne_A 50 DEHNKK 55 (485)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 253
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=22.09 E-value=3e+02 Score=23.90 Aligned_cols=40 Identities=23% Similarity=0.321 Sum_probs=19.8
Q ss_pred HHHHHHHhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q 019400 292 VSQLRVENSSLLKRLTD-------ISQKYNEAAVDNRVLKADVETLR 331 (341)
Q Consensus 292 V~~L~~EN~~L~~rl~~-------L~qk~~~l~~EN~~Lkaqle~LR 331 (341)
|+.|+.-.--|++++.. ..--|..+..||..+++.+.-.|
T Consensus 114 Ve~LT~TiG~LrKELEdEklK~~E~MdSFE~LkvENE~vkerl~mYR 160 (167)
T 4gkw_A 114 VESLTETIGILRKELENEKLKAAENMDSFEKLSMENENLKEKIAHYR 160 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHH
Confidence 44555444445555443 33345555566655555554433
No 254
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=21.92 E-value=1.8e+02 Score=28.75 Aligned_cols=14 Identities=21% Similarity=0.359 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHh
Q 019400 321 RVLKADVETLRAKV 334 (341)
Q Consensus 321 ~~Lkaqle~LRakV 334 (341)
..|+.++..|..++
T Consensus 122 ~~l~~~i~~l~~~~ 135 (409)
T 1m1j_C 122 TQLKQKIAQLESHC 135 (409)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHh
Confidence 34455555555443
No 255
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=21.60 E-value=3.3e+02 Score=22.18 Aligned_cols=46 Identities=17% Similarity=0.238 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 286 TELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLR 331 (341)
Q Consensus 286 eeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LR 331 (341)
.+|+.++..|.........++..|......+..+...|+.++..+.
T Consensus 79 ~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e 124 (129)
T 2fxo_A 79 IQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLE 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555666666666666554
No 256
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=21.40 E-value=2.4e+02 Score=20.40 Aligned_cols=29 Identities=24% Similarity=0.442 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 019400 286 TELETQVSQLRVENSSLLKRLTDISQKYN 314 (341)
Q Consensus 286 eeLE~qV~~L~~EN~~L~~rl~~L~qk~~ 314 (341)
..||.-|..|+..|..|.+.+..|.....
T Consensus 20 aklenivarlendnanlekdianlekdia 48 (56)
T 3he4_A 20 AKLENIVARLENDNANLEKDIANLEKDIA 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 45667777777777777777666544433
No 257
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=21.39 E-value=3.3e+02 Score=24.19 Aligned_cols=33 Identities=18% Similarity=0.345 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 019400 274 ARRSRRRKQAHLTELETQVSQLRVENSSLLKRL 306 (341)
Q Consensus 274 ARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl 306 (341)
|=|+-.+-+..++.||.++...+.++..+...+
T Consensus 133 AertV~kLqkeiD~LEDeL~~eKek~k~i~~eL 165 (175)
T 3mud_A 133 CLDTTAKNEKSIDDLEEKVAHAKEENLNMHQML 165 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555666665555555555554443
No 258
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=21.33 E-value=1.8e+02 Score=28.98 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019400 299 NSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVMH 336 (341)
Q Consensus 299 N~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~m 336 (341)
+..|.+++..|+++...-...=++|+..|+.++.+++.
T Consensus 115 s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqR 152 (390)
T 1deq_A 115 NEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKR 152 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666555555446777777777666554
No 259
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=21.13 E-value=5.5 Score=32.97 Aligned_cols=70 Identities=16% Similarity=0.334 Sum_probs=36.6
Q ss_pred cCCChhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 254 ENMDPVDAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAK 333 (341)
Q Consensus 254 ~~~d~~e~KR~RRklsNRESARRSR~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRak 333 (341)
.+..+.+..+.|. +|.|.+-+.|-..=..+ .+ .+...|..++..|.++...+..||..|+.++..|+.+
T Consensus 26 ~~Ls~~e~~~lK~--------~RR~lKNR~yAq~CR~r--k~-~~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~lk~k 94 (107)
T 3a5t_A 26 RGLSKEEIIQLKQ--------RRRTLKNRGYAASCRVK--RV-TQKEELEKQKAELQQEVEKLASENASMKLELDALRSK 94 (107)
T ss_dssp TTCCHHHHHHHHH--------HHHHHHHHHHHHHHHHH--HH-HHHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSSSSC
T ss_pred hCCCHHHHHHHHH--------HHHhhhhHHHHHHHHHH--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666654 33344444443322211 11 1233444455555555566678888888877766655
Q ss_pred h
Q 019400 334 V 334 (341)
Q Consensus 334 V 334 (341)
+
T Consensus 95 ~ 95 (107)
T 3a5t_A 95 Y 95 (107)
T ss_dssp C
T ss_pred H
Confidence 4
No 260
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1
Probab=21.09 E-value=1.8e+02 Score=22.81 Aligned_cols=45 Identities=22% Similarity=0.321 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADV 327 (341)
Q Consensus 283 a~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaql 327 (341)
+.+.+|...|..|+.|-.-...+|..+.--|+....++..+...|
T Consensus 8 ~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQ~~e~~~~~~~~~I 52 (82)
T 3tq7_B 8 QQLVDLKLTVDGLEKERDFYFSKLRDIELICQEHESENSPVISGI 52 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 467888899999999988888888877666665544443344433
No 261
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=21.06 E-value=1.3e+02 Score=22.82 Aligned_cols=30 Identities=13% Similarity=0.333 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019400 305 RLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (341)
Q Consensus 305 rl~~L~qk~~~l~~EN~~Lkaqle~LRakV 334 (341)
++.+|+..+.....+.+.|+.++..++.-+
T Consensus 26 ~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl 55 (67)
T 1zxa_A 26 RIKELEKRLSEKEEEIQELKRKLHKCQSVL 55 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444555556666777777777777776554
No 262
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=20.77 E-value=3.2e+02 Score=21.65 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHH
Q 019400 288 LETQVSQLRVENSSLLKRLTDI 309 (341)
Q Consensus 288 LE~qV~~L~~EN~~L~~rl~~L 309 (341)
|..+|..|+.|+..|+..+..|
T Consensus 51 Lh~~ie~l~eEi~~lk~en~eL 72 (83)
T 1uii_A 51 LHKEIEQKDNEIARLKKENKEL 72 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444333
No 263
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=20.72 E-value=5.5e+02 Score=24.43 Aligned_cols=73 Identities=19% Similarity=0.166 Sum_probs=49.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH------H--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019400 264 VRRMLSNRESARRSRRRKQAHLTELETQVSQLRV------E--NSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVM 335 (341)
Q Consensus 264 ~RRklsNRESARRSR~RKka~leeLE~qV~~L~~------E--N~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~LRakV~ 335 (341)
+.++..-=+-+++.=..|...++.|+..+..-+. + .-.-..-+.+..++++.+...-+.|.+|.+.|.++|.
T Consensus 311 L~~~~~~l~~~~~~~~~k~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~q~~~~~~~~~ 390 (406)
T 4dyl_A 311 LTSVTDELAVATEMVFRRQEMVTQLQQELRNEEENTHPRERVQLLGKRQVLQEALQGLQVALCSQAKLQAQQELLQTKLE 390 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3344444455667777788888888887765532 1 1112233556677888889999999999999999886
Q ss_pred c
Q 019400 336 H 336 (341)
Q Consensus 336 m 336 (341)
.
T Consensus 391 ~ 391 (406)
T 4dyl_A 391 H 391 (406)
T ss_dssp T
T ss_pred h
Confidence 4
No 264
>3tq2_A KE1; parallel three helix bundle, de novo protein; 1.10A {Synthetic}
Probab=20.45 E-value=2e+02 Score=19.19 Aligned_cols=29 Identities=17% Similarity=0.315 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 302 LLKRLTDISQKYNEAAVDNRVLKADVETL 330 (341)
Q Consensus 302 L~~rl~~L~qk~~~l~~EN~~Lkaqle~L 330 (341)
|..++..|.+++.-+.-.-..|++.+..|
T Consensus 6 lkekvsalkeqflmlmfkvsalkekvsal 34 (36)
T 3tq2_A 6 LKEKVSALKEQFLMLMFKVSALKEKVSAL 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555555555555555566555544
No 265
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=20.38 E-value=1.3e+02 Score=28.30 Aligned_cols=18 Identities=28% Similarity=0.324 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHhHHH
Q 019400 285 LTELETQVSQLRVENSSL 302 (341)
Q Consensus 285 leeLE~qV~~L~~EN~~L 302 (341)
++.|+.+.+.|+.|-.+|
T Consensus 187 ie~L~~~~~~L~eEi~~L 204 (315)
T 2ve7_A 187 LESLEAKNRALNEQIARL 204 (315)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444443333
No 266
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=20.36 E-value=3.4e+02 Score=25.34 Aligned_cols=74 Identities=16% Similarity=0.239 Sum_probs=43.0
Q ss_pred CChhHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019400 256 MDPVDAKRVRRMLSNRESARRSR-RRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVET 329 (341)
Q Consensus 256 ~d~~e~KR~RRklsNRESARRSR-~RKka~leeLE~qV~~L~~EN~~L~~rl~~L~qk~~~l~~EN~~Lkaqle~ 329 (341)
-.....|+++.-+-++.-==--| .==...+.++..+++.|..--..+..+|..+++.=..|+.+-..++..++.
T Consensus 149 YSl~~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief 223 (242)
T 3uux_B 149 YSPSALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDF 223 (242)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 34556777765443322211111 112356778888888888888888888888766655555555444444443
Done!