BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019402
(341 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BX4|A Chain A, Structure Of Human Adenosine Kinase At 1.50 Angstroms
pdb|2I6A|A Chain A, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6A|B Chain B, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6A|C Chain C, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6A|D Chain D, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6B|A Chain A, Human Adenosine Kinase In Complex With An Acetylinic
Inhibitor
pdb|2I6B|B Chain B, Human Adenosine Kinase In Complex With An Acetylinic
Inhibitor
Length = 345
Score = 415 bits (1066), Expect = e-116, Method: Compositional matrix adjust.
Identities = 193/340 (56%), Positives = 254/340 (74%), Gaps = 2/340 (0%)
Query: 4 EGILLGMGNPLLDISAVVDEEFLKKYDIKLNNAILAEDKHLPMYDELASKENVEYIAGGA 63
E IL GMGNPLLDISAVVD++FL KY +K N+ ILAEDKH ++DEL K VEY AGG+
Sbjct: 6 ENILFGMGNPLLDISAVVDKDFLDKYSLKPNDQILAEDKHKELFDELVKKFKVEYHAGGS 65
Query: 64 TQNSIKVAQWMLQIPG-ATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAV 122
TQNSIKVAQWM+Q P A ++ GCIG DKFGE +K+ + A V+ YYE PTGTCA
Sbjct: 66 TQNSIKVAQWMIQQPHKAATFFGCIGIDKFGEILKRKAAEAHVDAHYYEQNEQPTGTCAA 125
Query: 123 CVVGGERSLVANLSAANCYKSE-HLKRPEIWSIVEKAKYYYIAGFFLTVSPESIQMVAEH 181
C+ G RSL+ANL+AANCYK E HL + W +VEKA+ YIAGFFLTVSPES+ VA H
Sbjct: 126 CITGDNRSLIANLAAANCYKKEKHLDLEKNWMLVEKARVCYIAGFFLTVSPESVLKVAHH 185
Query: 182 AAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGWETDNVEEIA 241
A+ N++F +NLSAPFI +F++E K +PY+D +FGNETEA TFA+ G+ET +++EIA
Sbjct: 186 ASENNRIFTLNLSAPFISQFYKESLMKVMPYVDILFGNETEAATFAREQGFETKDIKEIA 245
Query: 242 LKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGG 301
K PK + +RI + TQG D ++A + +V F V+ +++++DTNGAGDAFVGG
Sbjct: 246 KKTQALPKMNSKRQRIVIFTQGRDDTIMATESEVTAFAVLDQDQKEIIDTNGAGDAFVGG 305
Query: 302 FLSQLVQEKPVEDCVRTGCYAANVVIQRSGCTYPPKPEFN 341
FLSQLV +KP+ +C+R G YAA+++I+R+GCT+P KP+F+
Sbjct: 306 FLSQLVSDKPLTECIRAGHYAASIIIRRTGCTFPEKPDFH 345
>pdb|3LOO|A Chain A, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
pdb|3LOO|B Chain B, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
pdb|3LOO|C Chain C, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
Length = 365
Score = 374 bits (960), Expect = e-104, Method: Compositional matrix adjust.
Identities = 175/339 (51%), Positives = 249/339 (73%), Gaps = 2/339 (0%)
Query: 4 EGILLGMGNPLLDISAVVDEEFLKKYDIKLNNAILAEDKHLPMYDELASKENVEYIAGGA 63
+G+L+G+GNPLLDISAVV+++ L KYD++ NNAILAE+KH+PMY EL K EYIAGG+
Sbjct: 23 DGMLVGLGNPLLDISAVVEKDLLNKYDMQPNNAILAEEKHMPMYQELIEKYQAEYIAGGS 82
Query: 64 TQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVC 123
QNS++VAQW+LQ P + GC+G+D++ +++ +T+ GVNV+Y ++PTGTCAV
Sbjct: 83 VQNSLRVAQWILQRPRTAIFFGCVGQDEYARILEERATSNGVNVQYQRSATSPTGTCAVL 142
Query: 124 VVGGERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYIAGFFLTVSPESIQMVAEHAA 183
V G +RSL ANL+AAN + EHL+ + ++ A+++Y++GFF TVS ES VA+ AA
Sbjct: 143 VTGTQRSLCANLAAANDFTPEHLRSDGNRAYLQGAQFFYVSGFFFTVSFESALSVAKEAA 202
Query: 184 AKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGWETDNVEEIALK 243
A ++FMMNLSAPF+ +F++ E+ PY+D +FGNETEA AK + T+++ EI +
Sbjct: 203 ATGRMFMMNLSAPFVPQFYKNNLEEIFPYVDVLFGNETEAIALAKEFNYGTEDLREIGKR 262
Query: 244 ISQWPKASGTHKRITVITQGADPVVVAEDG--KVKLFPVILLPKEKLVDTNGAGDAFVGG 301
I+ PK +G KRI +ITQG+DPV++ E G V+ FPV L E++VDTNGAGDAFVGG
Sbjct: 263 IAALPKENGKRKRIVIITQGSDPVLLIEAGTDNVREFPVQKLAPEQMVDTNGAGDAFVGG 322
Query: 302 FLSQLVQEKPVEDCVRTGCYAANVVIQRSGCTYPPKPEF 340
FL+QL+Q + V+ C++ G +AA +IQRSGCT+ +P F
Sbjct: 323 FLAQLLQSRTVDVCIKCGIWAAREIIQRSGCTFEGEPSF 361
>pdb|2XTB|A Chain A, Crystal Structure Of Trypanosoma Brucei Rhodesiense
Adenosine Kinase Complexed With Activator
pdb|3OTX|A Chain A, Crystal Structure Of Trypanosoma Brucei Rhodesiense
Adenosine Kinase Complexed With Inhibitor Ap5a
pdb|3OTX|B Chain B, Crystal Structure Of Trypanosoma Brucei Rhodesiense
Adenosine Kinase Complexed With Inhibitor Ap5a
Length = 347
Score = 267 bits (682), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 135/333 (40%), Positives = 200/333 (60%), Gaps = 4/333 (1%)
Query: 12 NPLLDISAVVDEEFLKKYDIKLNNAILAEDKHLPMYDELASKENVEYIAGGATQNSIKVA 71
NPLLD+SA V +EFL KY ++ AIL ++ ++D++ NV Y+ GG+ N +VA
Sbjct: 15 NPLLDVSAHVSDEFLVKYGLERGTAILLSERQKGIFDDIEKMPNVRYVPGGSGLNVARVA 74
Query: 72 QWMLQIPGA--TSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVVGGER 129
QWM Q +Y+GCI D++G+ +K+ + G+ + A +G CAVC+ G ER
Sbjct: 75 QWMQQAYKGKFVTYVGCIADDRYGKVLKEAAEHEGIVMAVEHTTKAGSGACAVCITGKER 134
Query: 130 SLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVF 189
+LVA+L AAN SEH++ P + +++++ +Y +GF LTV + A + +F
Sbjct: 135 TLVADLGAANHLSSEHMRSPAVVRAMDESRIFYFSGFTLTVDVNHVLQACRKAREVDGLF 194
Query: 190 MMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGWETDNVEEIALK-ISQWP 248
M+NLSAPFI +FF + LPY D + N EA+ FA + W+TD VEEIA + +S+ P
Sbjct: 195 MINLSAPFIMQFFSAQLGEVLPYTDIIVANRHEAKEFANMMKWDTDCVEEIARRAVSEVP 254
Query: 249 KASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQ 308
+GT R+ V T+ + V+A V+ PV L ++K++D NGAGDAF+GGFLS
Sbjct: 255 Y-TGTKGRVVVFTRDIESTVLATKDGVETVPVPQLDQDKVIDMNGAGDAFMGGFLSAYAV 313
Query: 309 EKPVEDCVRTGCYAANVVIQRSGCTYPPKPEFN 341
K + C TG Y A VIQR GC++P KP F+
Sbjct: 314 GKDLRRCCETGHYTAQEVIQRDGCSFPEKPSFS 346
>pdb|3VAQ|A Chain A, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine
pdb|3VAQ|B Chain B, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine
pdb|4DC3|A Chain A, Adenosine Kinase From Schistosoma Mansoni In Complex With
2- Fluoroadenosine
pdb|4DC3|B Chain B, Adenosine Kinase From Schistosoma Mansoni In Complex With
2- Fluoroadenosine
Length = 372
Score = 258 bits (658), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 132/342 (38%), Positives = 207/342 (60%), Gaps = 4/342 (1%)
Query: 4 EGILLGMGNPLLDISAVVDEEFLKKYDIKLNNAILAEDKHLPMYDELASKENVEYIAGGA 63
EG + GMGNPLLDI D+ +KY++K +N +LAE+KH+ +YDE+ K+ + YIAGGA
Sbjct: 26 EGYVFGMGNPLLDIIVDADDFMYRKYNLKKDNIVLAEEKHMTIYDEIQKKKKLNYIAGGA 85
Query: 64 TQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKY-YEDESAPTGTCAV 122
T N++K+ QW++Q P SY+GCIG D G+ +K + +A + ++ +E TG AV
Sbjct: 86 TLNTVKMIQWIIQKPFVCSYVGCIGADIQGKYIKNDCSALDLVTEFQIAEEPLMTGKVAV 145
Query: 123 CVVGGERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYIAGFFLTVSPESIQMVAEHA 182
V RS+V L AA H+++P +WS+VEKA+ YYIAGF + E + +A+H+
Sbjct: 146 LVSEKLRSMVTYLGAACDLSLAHIEQPHVWSLVEKAQVYYIAGFVINTCYEGMLKIAKHS 205
Query: 183 AAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGWETDNVEEIAL 242
K+F NLSAPF+ +F + ++ + Y + VFGNE+EA + +VHG D V A
Sbjct: 206 LENEKLFCFNLSAPFLSQFNTKEVDEMISYSNIVFGNESEAEAYGEVHGLLEDTVHATAR 265
Query: 243 KISQWPKASG-THKRITVITQGADPVVVAE--DGKVKLFPVILLPKEKLVDTNGAGDAFV 299
I+ P A G KR+ +IT+G +P++ + D ++ F V ++++DTNGAGDAF
Sbjct: 266 YIADLPFADGKKRKRLVIITRGKNPLLYTDSSDSEIHQFMVEQFKDDQIIDTNGAGDAFA 325
Query: 300 GGFLSQLVQEKPVEDCVRTGCYAANVVIQRSGCTYPPKPEFN 341
GF++ ++ KP+ + AA +I RSG + + ++
Sbjct: 326 AGFIADYIRGKPMITSLHAAVKAAAYIICRSGFSLGSRDSYS 367
>pdb|3UQ6|A Chain A, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine And Amp
pdb|3UQ6|B Chain B, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine And Amp
pdb|3UQ9|A Chain A, Adenosine Kinase From Schistosoma Mansoni In Complex With
Tubercidin
pdb|3UQ9|B Chain B, Adenosine Kinase From Schistosoma Mansoni In Complex With
Tubercidin
Length = 372
Score = 258 bits (658), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 132/342 (38%), Positives = 207/342 (60%), Gaps = 4/342 (1%)
Query: 4 EGILLGMGNPLLDISAVVDEEFLKKYDIKLNNAILAEDKHLPMYDELASKENVEYIAGGA 63
EG + GMGNPLLDI D+ +KY++K +N +LAE+KH+ +YDE+ K+ + YIAGGA
Sbjct: 26 EGYVFGMGNPLLDIIVDADDFMYRKYNLKKDNIVLAEEKHMTIYDEIQKKKKLNYIAGGA 85
Query: 64 TQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKY-YEDESAPTGTCAV 122
T N++K+ QW++Q P SY+GCIG D G+ +K + +A + ++ +E TG AV
Sbjct: 86 TLNTVKMIQWIIQKPFVCSYVGCIGADIQGKYIKNDCSALDLVTEFQIAEEPLMTGKVAV 145
Query: 123 CVVGGERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYIAGFFLTVSPESIQMVAEHA 182
V RS+V L AA H+++P +WS+VEKA+ YYIAGF + E + +A+H+
Sbjct: 146 LVSEKLRSMVTYLGAACDLSLAHIEQPHVWSLVEKAQVYYIAGFVINTCYEGMLKIAKHS 205
Query: 183 AAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGWETDNVEEIAL 242
K+F NLSAPF+ +F + ++ + Y + VFGNE+EA + +VHG D V A
Sbjct: 206 LENEKLFCFNLSAPFLSQFNTKEVDEMISYSNIVFGNESEAEAYGEVHGLLEDTVHATAR 265
Query: 243 KISQWPKASG-THKRITVITQGADPVVVAE--DGKVKLFPVILLPKEKLVDTNGAGDAFV 299
I+ P A G KR+ +IT+G +P++ + D ++ F V ++++DTNGAGDAF
Sbjct: 266 YIADLPFADGKKRKRLVIITRGKNPLLYTDSSDSEIHQFMVEQFKDDQIIDTNGAGDAFA 325
Query: 300 GGFLSQLVQEKPVEDCVRTGCYAANVVIQRSGCTYPPKPEFN 341
GF++ ++ KP+ + AA +I RSG + + ++
Sbjct: 326 AGFIADYIRGKPMITSLHAAVKAAAYIICRSGFSLGSRDSYS 367
>pdb|3VAS|A Chain A, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine In Occluded Loop Conformation
pdb|3VAS|B Chain B, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine In Occluded Loop Conformation
Length = 370
Score = 257 bits (657), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 132/342 (38%), Positives = 207/342 (60%), Gaps = 4/342 (1%)
Query: 4 EGILLGMGNPLLDISAVVDEEFLKKYDIKLNNAILAEDKHLPMYDELASKENVEYIAGGA 63
EG + GMGNPLLDI D+ +KY++K +N +LAE+KH+ +YDE+ K+ + YIAGGA
Sbjct: 24 EGYVFGMGNPLLDIIVDADDFMYRKYNLKKDNIVLAEEKHMTIYDEIQKKKKLNYIAGGA 83
Query: 64 TQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKY-YEDESAPTGTCAV 122
T N++K+ QW++Q P SY+GCIG D G+ +K + +A + ++ +E TG AV
Sbjct: 84 TLNTVKMIQWIIQKPFVCSYVGCIGADIQGKYIKNDCSALDLVTEFQIAEEPLMTGKVAV 143
Query: 123 CVVGGERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYIAGFFLTVSPESIQMVAEHA 182
V RS+V L AA H+++P +WS+VEKA+ YYIAGF + E + +A+H+
Sbjct: 144 LVSEKLRSMVTYLGAACDLSLAHIEQPHVWSLVEKAQVYYIAGFVINTCYEGMLKIAKHS 203
Query: 183 AAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGWETDNVEEIAL 242
K+F NLSAPF+ +F + ++ + Y + VFGNE+EA + +VHG D V A
Sbjct: 204 LENEKLFCFNLSAPFLSQFNTKEVDEMISYSNIVFGNESEAEAYGEVHGLLEDTVHATAR 263
Query: 243 KISQWPKASG-THKRITVITQGADPVVVAE--DGKVKLFPVILLPKEKLVDTNGAGDAFV 299
I+ P A G KR+ +IT+G +P++ + D ++ F V ++++DTNGAGDAF
Sbjct: 264 YIADLPFADGKKRKRLVIITRGKNPLLYTDSSDSEIHQFMVEQFKDDQIIDTNGAGDAFA 323
Query: 300 GGFLSQLVQEKPVEDCVRTGCYAANVVIQRSGCTYPPKPEFN 341
GF++ ++ KP+ + AA +I RSG + + ++
Sbjct: 324 AGFIADYIRGKPMITSLHAAVKAAAYIICRSGFSLGSRDSYS 365
>pdb|1LIO|A Chain A, Structure Of Apo T. Gondii Adenosine Kinase
Length = 363
Score = 177 bits (449), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 120/346 (34%), Positives = 181/346 (52%), Gaps = 28/346 (8%)
Query: 7 LLGMGNPLLDISAVVDEEFLKKYDIKLNNAILAEDKHLPMYDELASKENVEYIAGGATQN 66
+ +GNP+LD+ A V FL ++ +K +A LA + + +Y L + N + GG+ N
Sbjct: 15 VFAIGNPILDLVAEVPSSFLDEFFLKRGDATLATPEQMRIYSTL-DQFNPTSLPGGSALN 73
Query: 67 SIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVVG 126
S++V Q +L+ PG+ Y+G IG D G+ +K+ G+ ++ TGTCAV +
Sbjct: 74 SVRVVQKLLRKPGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVAPGQSTGTCAVLINE 133
Query: 127 GERSLVANLSAANCYKSEHLKRPEIW-SIVEKAKYYYIAGFFLTVSPESIQMVAEHA-AA 184
ER+L +L A ++ PE W + A +Y + LT +P++ VA +A
Sbjct: 134 KERTLCTHLGACGSFRI-----PEDWTTFASGALIFYATAYTLTATPKNALEVAGYAHGI 188
Query: 185 KNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVH--------GWETDN 236
N +F +NLSAPF E +++ + L + + +FGNE E AKVH T N
Sbjct: 189 PNAIFTLNLSAPFCVELYKDAMQSLLLHTNILFGNEEEFAHLAKVHNLVAADKTALSTAN 248
Query: 237 VEEI------ALKISQWPKASGTHKRITVITQGADPVVVAE---DGK--VKLFPVILLPK 285
E AL++ + +G K + V+T+G +PV+ AE DG V V ++
Sbjct: 249 KEHAVEVCTGALRLLTAGQNTGATK-LVVMTRGHNPVIAAEQTADGTVVVHEVGVPVVAA 307
Query: 286 EKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQRSG 331
EK+VDTNGAGDAFVGGFL L Q K V+ C+ G A VIQ G
Sbjct: 308 EKIVDTNGAGDAFVGGFLYGLSQGKTVKQCIMCGNACAQDVIQHVG 353
>pdb|1LII|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Adenosine
2 And Amp-Pcp
pdb|1LIJ|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Prodrug 2
7-Iodotubercidin And Amp-Pcp
pdb|1LIK|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Adenosine
Length = 363
Score = 176 bits (447), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 119/347 (34%), Positives = 182/347 (52%), Gaps = 30/347 (8%)
Query: 7 LLGMGNPLLDISAVVDEEFLKKYDIKLNNAILAEDKHLPMYDELASKENVEYIAGGATQN 66
+ +GNP+LD+ A V FL ++ +K +A LA + + +Y L + N + GG+ N
Sbjct: 15 VFAIGNPILDLVAEVPSSFLDEFFLKRGDATLATPEQMRIYSTL-DQFNPTSLPGGSALN 73
Query: 67 SIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVVG 126
S++V Q +L+ PG+ Y+G IG D G+ +K+ G+ ++ TGTCAV +
Sbjct: 74 SVRVVQKLLRKPGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVAPGQSTGTCAVLINE 133
Query: 127 GERSLVANLSAANCYKSEHLKRPEIW-SIVEKAKYYYIAGFFLTVSPESIQMVAEHA-AA 184
ER+L +L A ++ PE W + A +Y + LT +P++ VA +A
Sbjct: 134 KERTLCTHLGACGSFRI-----PENWTTFASGALIFYATAYTLTATPKNALEVAGYAHGI 188
Query: 185 KNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGWETDNVEEIALKI 244
N +F +NLSAPF E +++ + L + + +FGNE E AKVH E++AL +
Sbjct: 189 PNAIFTLNLSAPFCVELYKDAMQSLLLHTNILFGNEEEFAHLAKVHNLVA--AEKVALSV 246
Query: 245 SQWPKA----SGTHKRIT-----------VITQGADPVVVAE---DGK--VKLFPVILLP 284
+ A +G + +T V+T+G +PV+ AE DG V V ++
Sbjct: 247 ANKEHAVEVCTGALRLLTAGQNTGATKLVVMTRGHNPVIAAEQTADGTVVVHEVGVPVVA 306
Query: 285 KEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQRSG 331
EK+VDTNGAGDAFVGGFL L Q K V+ C+ G A VIQ G
Sbjct: 307 AEKIVDTNGAGDAFVGGFLYGLSQGKTVKQCIMCGNACAQDVIQHVG 353
>pdb|1DGM|A Chain A, Crystal Structure Of Adenosine Kinase From Toxoplasma
Gondii
Length = 363
Score = 176 bits (445), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 119/346 (34%), Positives = 180/346 (52%), Gaps = 28/346 (8%)
Query: 7 LLGMGNPLLDISAVVDEEFLKKYDIKLNNAILAEDKHLPMYDELASKENVEYIAGGATQN 66
+ +GNP+LD+ A V FL ++ +K +A LA + + +Y L + N + GG+ N
Sbjct: 15 VFAIGNPILDLVAEVPSSFLDEFFLKRGDATLATPEQMRIYSTL-DQFNPTSLPGGSALN 73
Query: 67 SIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVVG 126
S++V Q +L+ PG+ Y+G IG D G+ +K+ G+ ++ TG CAV +
Sbjct: 74 SVRVVQKLLRKPGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVAPGQSTGVCAVLINE 133
Query: 127 GERSLVANLSAANCYKSEHLKRPEIW-SIVEKAKYYYIAGFFLTVSPESIQMVAEHA-AA 184
ER+L +L A + + PE W + A +Y + LT +P++ VA +A
Sbjct: 134 KERTLCTHLGACGSF-----RLPEDWTTFASGALIFYATAYTLTATPKNAFEVAGYAHGI 188
Query: 185 KNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVH--------GWETDN 236
N +F +NLSAPF E +++ + L + + +FGNE E AKVH T N
Sbjct: 189 PNAIFTLNLSAPFCVELYKDAMQSLLLHTNILFGNEEEFAHLAKVHNLVAAEKTALSTAN 248
Query: 237 VEEI------ALKISQWPKASGTHKRITVITQGADPVVVAE---DGK--VKLFPVILLPK 285
E AL++ + +G K + V+T+G +PV+ AE DG V V ++
Sbjct: 249 KEHAVEVCTGALRLLTAGQNTGATK-LVVMTRGHNPVIAAEQTADGTVVVHEVGVPVVAA 307
Query: 286 EKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQRSG 331
EK+VDTNGAGDAFVGGFL L Q K V+ C+ G A VIQ G
Sbjct: 308 EKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVG 353
>pdb|2ABS|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With Amp-Pcp
pdb|2A9Y|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With N6-Dimethyladenosine
pdb|2A9Z|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With N6-Dimethyladenosine And Amp-Pcp
pdb|2AA0|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With 6-Methylmercaptopurine Riboside
pdb|2AB8|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With 6-Methylmercaptopurine Riboside And Amp-Pcp
Length = 383
Score = 173 bits (439), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 118/346 (34%), Positives = 179/346 (51%), Gaps = 28/346 (8%)
Query: 7 LLGMGNPLLDISAVVDEEFLKKYDIKLNNAILAEDKHLPMYDELASKENVEYIAGGATQN 66
+ +GNP+LD+ A V FL ++ +K +A LA + + +Y L + N + GG+ N
Sbjct: 35 VFAIGNPILDLVAEVPSSFLDEFFLKRGDATLATPEQMRIYSTL-DQFNPTSLPGGSALN 93
Query: 67 SIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVVG 126
S++V Q +L+ PG+ Y+G IG D G+ +K+ G+ ++ TG CAV +
Sbjct: 94 SVRVVQKLLRKPGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVAPGQSTGVCAVLINE 153
Query: 127 GERSLVANLSAANCYKSEHLKRPEIW-SIVEKAKYYYIAGFFLTVSPESIQMVAEHA-AA 184
ER+L +L A + + PE W + A +Y + LT +P++ VA +A
Sbjct: 154 KERTLCTHLGACGSF-----RLPEDWTTFASGALIFYATAYTLTATPKNALEVAGYAHGI 208
Query: 185 KNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVH--------GWETDN 236
N +F +NLSAPF E +++ + L + + +FGNE E AKVH T N
Sbjct: 209 PNAIFTLNLSAPFCVELYKDAMQSLLLHTNILFGNEEEFAHLAKVHNLVAAEKTALSTAN 268
Query: 237 VEEI------ALKISQWPKASGTHKRITVITQGADPVVVAE---DGK--VKLFPVILLPK 285
E AL++ + + K + V+T+G +PV+ AE DG V V ++
Sbjct: 269 KEHAVEVCTGALRLLTAGQNTSATK-LVVMTRGHNPVIAAEQTADGTVVVHEVGVPVVAA 327
Query: 286 EKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQRSG 331
EK+VDTNGAGDAFVGGFL L Q K V+ C+ G A VIQ G
Sbjct: 328 EKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVG 373
>pdb|4E3A|A Chain A, Crystal Structure Of Probable Sugar Kinase Protein From
Rhizobium Etli Cfn 42
pdb|4E3A|B Chain B, Crystal Structure Of Probable Sugar Kinase Protein From
Rhizobium Etli Cfn 42
Length = 352
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 91/340 (26%), Positives = 146/340 (42%), Gaps = 37/340 (10%)
Query: 7 LLGMGNPLLDISAVVDEEFLKKYDIK--LNNAILAEDKHLPMYDELASKENVEYIAGGAT 64
+L +GN ++DI + +++FL I N I AE L +Y +GG+
Sbjct: 28 VLTVGNAIVDIISRCNDQFLIDNQITKAAXNLIDAERAEL-LYSRXGPALEA---SGGSA 83
Query: 65 QNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDES-APTGTCAVC 123
N+ A + + G +Y G + D+ G+ + A GV+ + + PT +
Sbjct: 84 GNT---AAGVANLGGKAAYFGNVAADQLGDIFTHDIRAQGVHYQTKPKGAFPPTARSXIF 140
Query: 124 VV-GGERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYIAGFFLT--VSPESIQMVAE 180
V GERS L A E ++ +V AK Y G+ + E+I A
Sbjct: 141 VTEDGERSXNTYLGACVELGPEDVE----ADVVADAKVTYFEGYLWDPPRAKEAILDCAR 196
Query: 181 HAAAKNKVFMMNLSAPFICEFFREP--QEKALPYMDYVFGNETEARTFAKVHGWETDNVE 238
A + LS F + +R +D VF N EA + ++TD+ E
Sbjct: 197 IAHQHGREXSXTLSDSFCVDRYRGEFLDLXRSGKVDIVFANRQEALSL-----YQTDDFE 251
Query: 239 EIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAF 298
E +I+ K I +T + V+ + G+ + + + +E +VDT GAGD F
Sbjct: 252 EALNRIAADCK-------IAAVTXSENGAVILK-GRERYYVNAIRIRE-VVDTTGAGDLF 302
Query: 299 VGGFLSQLVQEKPVEDCVRTGCYAANVVIQRSGCTYPPKP 338
GFL Q + +EDC + GC AA +VIQ+ G P+P
Sbjct: 303 ASGFLYGYTQGRSLEDCGKLGCLAAGIVIQQIG----PRP 338
>pdb|3UBO|A Chain A, The Crystal Structure Of Adenosine Kinase From
Sinorhizobium Meliloti
pdb|3UBO|B Chain B, The Crystal Structure Of Adenosine Kinase From
Sinorhizobium Meliloti
Length = 354
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 88/339 (25%), Positives = 148/339 (43%), Gaps = 35/339 (10%)
Query: 7 LLGMGNPLLDISAVVDEEFLKKYDI-KLNNAILAEDKHLPMYDELASKENVEYIAGGATQ 65
+L +GN ++DI A D+ FL++ I K ++ D+ +Y VE G A
Sbjct: 8 VLTIGNAIVDIIARCDDSFLEENGIIKGAXNLINADRAELLYSRXGPA--VEASGGSAGN 65
Query: 66 NSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYE-DESAPTGTCAVCV 124
+ VA + G +Y G + D+ GE + A GV+ + D PT + V
Sbjct: 66 TAAGVAS----LGGRAAYFGKVADDQLGEIFTHDIRAQGVHFQTKPLDGHPPTARSXIFV 121
Query: 125 V-GGERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYIAGFFLT--VSPESIQMVAEH 181
GERS L A E ++ +V ++K Y G+ + ++I+ A
Sbjct: 122 TEDGERSXNTYLGACVELGPEDVED----DVVAQSKVTYFEGYLWDPPRAKDAIREAARI 177
Query: 182 AAAKNKVFMMNLSAPFICEFFREP--QEKALPYMDYVFGNETEARTFAKVHGWETDNVEE 239
A A + LS F +R + +D VF N EA +ET++ +
Sbjct: 178 AHAHGRETAXTLSDSFCVHRYRSEFLELXRSGTVDIVFANRQEALAL-----YETEDFDR 232
Query: 240 IALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFV 299
+++ K + +T+ +G+ VVV +V++ +L E++VDT GAGD +
Sbjct: 233 ALELLARDCKLAA----VTLSEEGS--VVVRGAERVRVGASVL---EQVVDTTGAGDLYA 283
Query: 300 GGFLSQLVQEKPVEDCVRTGCYAANVVIQRSGCTYPPKP 338
GFL + +E+C + G AA +VI + G P+P
Sbjct: 284 AGFLFGYTSGRSLEECSKLGNLAAGIVIGQIG----PRP 318
>pdb|1RK2|A Chain A, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|B Chain B, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|C Chain C, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|D Chain D, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RKA|A Chain A, The Apo Form Of E. Coli Ribokinase
pdb|1RKS|A Chain A, E. Coli Ribokinase In Complex With D-Ribose
pdb|1GQT|A Chain A, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|B Chain B, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|C Chain C, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|D Chain D, Activation Of Ribokinase By Monovalent Cations
pdb|1RKD|A Chain A, E. Coli Ribokinase Complexed With Ribose And Adp
Length = 309
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 113/255 (44%), Gaps = 26/255 (10%)
Query: 82 SYIGCIGKDKFGEEMKKNSTAAGVN---VKYYEDESAPTGTCAVCVVGGERSLVANLSAA 138
++I C G D GE +++ ++ V + ES TG + V G +++ + A
Sbjct: 59 AFIACTGDDSIGESVRQQLATDNIDITPVSVIKGES--TGVALIFVNGEGENVIGIHAGA 116
Query: 139 NCYKSEHLKRPEIWSIVEKAKYYYIAGFFLTV-SPESIQMVAEHAAAKNKVFMMNLSAPF 197
N S L ++ + + + + SP M A A +NK + AP
Sbjct: 117 NAALSPALVE------AQRERIANASALLMQLESPLESVMAAAKIAHQNKTIVALNPAPA 170
Query: 198 ICEFFREPQEKALPYMDYVFGNETEARTFAKVHGWETDNVEEIALKISQWPKASGTHKRI 257
RE ++ L +D + NETEA K+ G +N +E A K +Q G R
Sbjct: 171 -----RELPDELLALVDIITPNETEAE---KLTGIRVEN-DEDAAKAAQVLHEKGI--RT 219
Query: 258 TVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVR 317
+IT G+ V + +G+ + P + + VDT AGD F G ++ L++EKP+ + +R
Sbjct: 220 VLITLGSRGVWASVNGEGQRVPGF---RVQAVDTIAAGDTFNGALITALLEEKPLPEAIR 276
Query: 318 TGCYAANVVIQRSGC 332
AA + + R G
Sbjct: 277 FAHAAAAIAVTRKGA 291
>pdb|3LHX|A Chain A, Crystal Structure Of A Ketodeoxygluconokinase (Kdgk) From
Shigella Flexneri
pdb|3LHX|B Chain B, Crystal Structure Of A Ketodeoxygluconokinase (Kdgk) From
Shigella Flexneri
Length = 319
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 81/188 (43%), Gaps = 26/188 (13%)
Query: 160 YYYIAGFFLTV-SPES----IQMVAEHAAAKNKVFMMNLSAPFICEFFREPQE---KALP 211
Y Y++G L + SP S + ++ E A KV N P + E Q+ + L
Sbjct: 132 YLYLSGISLAILSPTSREKLLSLLRECRAKGGKVIFDNNYRPRLWASKEETQQVYQQXLE 191
Query: 212 YMDYVFGNETEARTFAKVHGWETDNVEEIALKISQWPKASGTHK---RITVITQGADPVV 268
D F + W VE++ + TH + V+ +GAD +
Sbjct: 192 CTDIAFLTLDDEDAL-----WGQQPVEDVIAR---------THNAGVKEVVVKRGADSCL 237
Query: 269 VAEDGKVKL-FPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVI 327
V+ G+ + P + LPKEK++DT AGD+F G+L+ + E+ + G A+ VI
Sbjct: 238 VSIAGEALVDVPAVKLPKEKVIDTTAAGDSFSAGYLAVRLTGGSAENAAKRGHLTASTVI 297
Query: 328 QRSGCTYP 335
Q G P
Sbjct: 298 QYRGAIIP 305
>pdb|3H49|A Chain A, Crystal Structure Of A Putative Ribokinase (Apo Form) From
E.Coli At 1.8a Resolution
pdb|3H49|B Chain B, Crystal Structure Of A Putative Ribokinase (Apo Form) From
E.Coli At 1.8a Resolution
pdb|3IN1|A Chain A, Crystal Structure Of A Putative Ribokinase In Complex With
Adp From E.Coli
pdb|3IN1|B Chain B, Crystal Structure Of A Putative Ribokinase In Complex With
Adp From E.Coli
Length = 325
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 68/290 (23%), Positives = 123/290 (42%), Gaps = 29/290 (10%)
Query: 56 VEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDESA 115
+E IA ++I A + ++ T+ IGKD G+ + + ++++ + + +
Sbjct: 35 LERIAXTTGGDAINEATIISRLGHRTALXSRIGKDAAGQFILDHCRKENIDIQSLKQDVS 94
Query: 116 PTGTCAVCVV--GGERSLVANLSAANCYKSEHLKRPEI----WSIVEKAKYYYIAGFFLT 169
+ V +V GER+ V N ++ L + I ++ +AK +A F +
Sbjct: 95 IDTSINVGLVTEDGERTFVTN-------RNGSLWKLNIDDVDFARFSQAKLLSLASIFNS 147
Query: 170 --VSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFA 227
+ +++ + A A+ + + P + E + E AL Y+DY+F N EA+
Sbjct: 148 PLLDGKALTEIFTQAKARQXIICADXIKPRLNETLDDICE-ALSYVDYLFPNFAEAKLLT 206
Query: 228 KVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEK 287
G ET ++EIA A G + VI G D + P +
Sbjct: 207 ---GKET--LDEIA----DCFLACGV--KTVVIKTGKDGCFIKRGDXTXKVPAV--AGIT 253
Query: 288 LVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQRSGCTYPPK 337
+DT GAGD F GF++ L++ K + +C R A + + G T K
Sbjct: 254 AIDTIGAGDNFASGFIAALLEGKNLRECARFANATAAISVLSVGATTGVK 303
>pdb|2FV7|A Chain A, Crystal Structure Of Human Ribokinase
pdb|2FV7|B Chain B, Crystal Structure Of Human Ribokinase
Length = 331
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 121/268 (45%), Gaps = 27/268 (10%)
Query: 81 TSYIGCIGKDKFGEEMKKNSTAAGVNVKY-YEDESAPTGTCAVCVVGGERSLVANLSAAN 139
TS + +GKD FG + +N ++ ++ Y+ + A TGT ++ V ++++ ++ AN
Sbjct: 78 TSMVCKVGKDSFGNDYIENLKQNDISTEFTYQTKDAATGTASIIVNNEGQNIIVIVAGAN 137
Query: 140 CY-KSEHLKRPEIWSIVEKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFI 198
+E L+ +++ +AK L ++P + + A A ++ V + AP I
Sbjct: 138 LLLNTEDLRAAA--NVISRAKVMVCQ---LEITPAT-SLEALTMARRSGVKTLFNPAPAI 191
Query: 199 CEFFREPQEKALPYMDYVFGNETEARTFAKVHGWETDNVEEIALKISQWPKASGTHKRIT 258
+ +PQ L D NE+EA + + E AL + + ++
Sbjct: 192 ADL--DPQFYTLS--DVFCCNESEAEILTGLTVGSAADAGEAALVLLKR------GCQVV 241
Query: 259 VITQGADPVVVAE--DGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLV--QEKPVED 314
+IT GA+ VV + + K P K K VDT GAGD+FVG L +ED
Sbjct: 242 IITLGAEGCVVLSQTEPEPKHIPT---EKVKAVDTTGAGDSFVGALAFYLAYYPNLSLED 298
Query: 315 CVRTGCYAANVVIQRSGC--TYPPKPEF 340
+ + A V +Q +G +YP K +
Sbjct: 299 MLNRSNFIAAVSVQAAGTQSSYPYKKDL 326
>pdb|1TZ6|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica Complexed With Aminoimidazole
Riboside And Atp Analog
pdb|1TZ6|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica Complexed With Aminoimidazole
Riboside And Atp Analog
Length = 339
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 113/264 (42%), Gaps = 45/264 (17%)
Query: 61 GGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTC 120
GGA+ N V + ++ G +IGC+G D G +++ GV+V + ++ T
Sbjct: 50 GGASAN---VGVCVARLGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRLDADLTS-- 104
Query: 121 AVCVVG----GERSLVANLS-AANCYKSEHLKRPEIWSIVEKAKYYYIAGFFLTVSP--- 172
AV +V GERS + A+ Y S P+ + +++Y + LT P
Sbjct: 105 AVLIVNLTADGERSFTYLVHPGADTYVS-----PQDLPPFRQYEWFYFSSIGLTDRPARE 159
Query: 173 ---ESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKV 229
E + + E A +F +NL + P+ A + A +
Sbjct: 160 ACLEGARRMRE--AGGYVLFDVNLRSKMWGNTDEIPELIA------------RSAALASI 205
Query: 230 HGWETDNVEEIALKISQWPKASGTHKRI----TVITQGAD-PVVVAEDGKVKLFPVILLP 284
D + +++ S W A + + T+I+ GAD +++ +G+ FP P
Sbjct: 206 CKVSADELCQLS-GASHWQDARYYLRDLGCDTTIISLGADGALLITAEGEFH-FPA---P 260
Query: 285 KEKLVDTNGAGDAFVGGFLSQLVQ 308
+ +VDT GAGDAFVGG L L +
Sbjct: 261 RVDVVDTTGAGDAFVGGLLFTLSR 284
>pdb|1TYY|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica
pdb|1TYY|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica
pdb|1TZ3|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase
Complexed With Aminoimidazole Riboside
pdb|1TZ3|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase
Complexed With Aminoimidazole Riboside
Length = 339
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 112/264 (42%), Gaps = 45/264 (17%)
Query: 61 GGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTC 120
GGA+ N V + ++ G +IGC+G D G +++ GV+V + ++ T
Sbjct: 50 GGASAN---VGVCVARLGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRLDADLTS-- 104
Query: 121 AVCVVG----GERSLVANLS-AANCYKSEHLKRPEIWSIVEKAKYYYIAGFFLTVSP--- 172
AV +V GERS + A+ Y S P+ + +++Y + LT P
Sbjct: 105 AVLIVNLTADGERSFTYLVHPGADTYVS-----PQDLPPFRQYEWFYFSSIGLTDRPARE 159
Query: 173 ---ESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKV 229
E + E A +F +NL + K D + + A +
Sbjct: 160 ACLEGARRXRE--AGGYVLFDVNL------------RSKXWGNTDEIPELIARSAALASI 205
Query: 230 HGWETDNVEEIALKISQWPKASGTHKRI----TVITQGAD-PVVVAEDGKVKLFPVILLP 284
D + +++ S W A + + T+I+ GAD +++ +G+ FP P
Sbjct: 206 CKVSADELCQLS-GASHWQDARYYLRDLGCDTTIISLGADGALLITAEGEFH-FPA---P 260
Query: 285 KEKLVDTNGAGDAFVGGFLSQLVQ 308
+ +VDT GAGDAFVGG L L +
Sbjct: 261 RVDVVDTTGAGDAFVGGLLFTLSR 284
>pdb|1V19|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
pdb|1V19|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
pdb|1V1A|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound 2-Keto-3-Deoxygluconate And Adp
pdb|1V1A|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound 2-Keto-3-Deoxygluconate And Adp
pdb|1V1B|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|C Chain C, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|D Chain D, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1S|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|C Chain C, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|D Chain D, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|E Chain E, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|F Chain F, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
Length = 309
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 73/297 (24%), Positives = 121/297 (40%), Gaps = 48/297 (16%)
Query: 50 LASKENVEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKY 109
L K +E GGA N VA + ++ ++G +G+D+ G +++ A GV++ +
Sbjct: 22 LRGKRLLEVYVGGAEVN---VAVALARLGVKVGFVGRVGEDELGAMVEERLRAEGVDLTH 78
Query: 110 YEDESAPTGTCA--VCVVGGERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYIAGFF 167
+ TG +G R +A + P+ +E ++ +++G
Sbjct: 79 FRRAPGFTGLYLREYLPLGQGRVFYYRKGSAGSALAPGAFDPDY---LEGVRFLHLSGIT 135
Query: 168 LTVSPES--IQMVAEHAAAKNKV-------FMMNLSAPFICEFFREPQEKALPYMDYVFG 218
+SPE+ + A A + V + L +P F E+ALP +D +F
Sbjct: 136 PALSPEARAFSLWAMEEAKRRGVRVSLDVNYRQTLWSPEEARGF---LERALPGVDLLFL 192
Query: 219 NETEART-FAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKV-- 275
+E EA F +V E AL+ P+ V+ +GA DG+
Sbjct: 193 SEEEAELLFGRV---------EEALRALSAPE--------VVLKRGAKGAWAFVDGRRVE 235
Query: 276 -KLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTG-CYAANVVIQRS 330
F V + VD GAGDAF G+L+ V PVE+ +R A+V R
Sbjct: 236 GSAFAV------EAVDPVGAGDAFAAGYLAGAVWGLPVEERLRLANLLGASVAASRG 286
>pdb|1VM7|A Chain A, Crystal Structure Of Ribokinase (Tm0960) From Thermotoga
Maritima At 2.15 A Resolution
pdb|1VM7|B Chain B, Crystal Structure Of Ribokinase (Tm0960) From Thermotoga
Maritima At 2.15 A Resolution
Length = 311
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/260 (24%), Positives = 104/260 (40%), Gaps = 30/260 (11%)
Query: 83 YIGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVVGGERSLVANLSAANCYK 142
++ CIG D + + + +N G+ Y S PTG + V ++ + AN
Sbjct: 71 FVTCIGNDDYSDLLIENYEKLGIT--GYIRVSLPTGRAFIEVDKTGQNRIIIFPGANA-- 126
Query: 143 SEHLKRPEI-WSIVEKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEF 201
LK+ I W+ + ++ L + + E A N + + + AP
Sbjct: 127 --ELKKELIDWNTLSESD------ILLLQNEIPFETTLECAKRFNGIVIFD-PAPA---- 173
Query: 202 FREPQEKALPYMDYVFGNETEARTFAKVHGWETDNVEEIALKISQWPKASGTHKRITVIT 261
+ E+ Y+DY+ NE E +K E VE+ A K + + ++
Sbjct: 174 -QGINEEIFQYLDYLTPNEKEIEALSKDFFGEFLTVEKAAEKFLELGVKN------VIVK 226
Query: 262 QGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCY 321
G V++ + K FP K K VDT AGD F G F L + K E+ V G
Sbjct: 227 LGDKGVLLVNKNEKKHFPTF---KVKAVDTTAAGDVFNGAFAVALSEGKNPEEAVIFGTA 283
Query: 322 AANVVIQRSGC--TYPPKPE 339
AA + + R G + P + E
Sbjct: 284 AAAISVTRLGAQSSIPAREE 303
>pdb|2NWH|A Chain A, Carbohydrate Kinase From Agrobacterium Tumefaciens
Length = 317
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 62/130 (47%), Gaps = 21/130 (16%)
Query: 209 ALPYMDYVFGNETEARTFAKVHGWETDNVEEIALKISQWP---KASGTHKRITVITQGAD 265
AL +D +F NE EAR E A + WP + +G V+T+GA
Sbjct: 179 ALGDIDILFMNEAEARALTG----------ETAENVRDWPNILRKAGLSG--GVVTRGAS 226
Query: 266 PVVVAEDG--KVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAA 323
VV A +G K L P ++ ++ D GAGDA G+L+ + + K + + +R G AA
Sbjct: 227 EVV-AFNGTEKAILHPPLI---REVKDVTGAGDAMASGYLAAIAEGKTIREALRQGAAAA 282
Query: 324 NVVIQRSGCT 333
+ +Q S T
Sbjct: 283 AITVQSSFAT 292
>pdb|2C49|A Chain A, Crystal Structure Of Methanocaldococcus Jannaschii
Nucleoside Kinase - An Archaeal Member Of The Ribokinase
Family
pdb|2C49|B Chain B, Crystal Structure Of Methanocaldococcus Jannaschii
Nucleoside Kinase - An Archaeal Member Of The Ribokinase
Family
pdb|2C4E|A Chain A, Crystal Structure Of Methanocaldococcus Jannaschii
Nucleoside Kinase - An Archaeal Member Of The Ribokinase
Family
Length = 302
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 259 VITQGAD-PVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVR 317
++T+G+ V+ +D K+++ P I K++D GAGD++ GFLS V+ +E C
Sbjct: 212 IVTKGSKGSVIYTKDKKIEI-PCI--KAGKVIDPTGAGDSYRAGFLSAYVKGYDLEKCGL 268
Query: 318 TGCYAANVVIQRSGC 332
G A+ V++ GC
Sbjct: 269 IGAATASFVVEAKGC 283
>pdb|3Q1Y|A Chain A, Allosteric Regulation By Lysine Residue: A Novel
Anion-Hole Formation In The Ribokinase Family
Length = 320
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 5/74 (6%)
Query: 259 VITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVR- 317
V++ GA + A +GK L+ VI PK + + GAGD FVG F++ L P+ + ++
Sbjct: 219 VVSLGAKGSICAHNGK--LYQVIP-PKVQERNDTGAGDVFVGAFIAGLAMNMPITETLKV 275
Query: 318 -TGCYAANVVIQRS 330
TGC A+ V+ Q S
Sbjct: 276 ATGCSASAVMQQDS 289
>pdb|3HIC|A Chain A, The Crystal Structure Of Phosphofructokinase(Lin2199)from
Listeria Innocua
pdb|3IE7|A Chain A, The Crystal Structure Of Phosphofructokinase (Lin2199)
From Listeria Innocua In Complex With Atp At 1.6a
pdb|3JUL|A Chain A, Crystal Structure Of Listeria Innocua
D-Tagatose-6-Phosphate Kinase Bound With Substrate
Length = 320
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query: 259 VITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVR- 317
V++ GA + A +GK L+ VI PK + + GAGD FVG F++ L P+ + ++
Sbjct: 219 VVSLGAKGSICAHNGK--LYQVIP-PKVQERNDTGAGDVFVGAFIAGLAXNXPITETLKV 275
Query: 318 -TGCYAANVVIQRS 330
TGC A+ V Q S
Sbjct: 276 ATGCSASKVXQQDS 289
>pdb|3B3L|A Chain A, Crystal Structures Of Alternatively-Spliced Isoforms Of
Human Ketohexokinase
pdb|3B3L|B Chain B, Crystal Structures Of Alternatively-Spliced Isoforms Of
Human Ketohexokinase
pdb|3B3L|C Chain C, Crystal Structures Of Alternatively-Spliced Isoforms Of
Human Ketohexokinase
pdb|3B3L|D Chain D, Crystal Structures Of Alternatively-Spliced Isoforms Of
Human Ketohexokinase
Length = 298
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 59/272 (21%), Positives = 108/272 (39%), Gaps = 35/272 (12%)
Query: 61 GGATQNSIKVAQWMLQIPGA-TSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDES---AP 116
GG NS V L + GA +++G + + + + GV+V +S P
Sbjct: 40 GGNASNSCTV----LSLLGAPCAFMGSMAPGHVADFLVADFRRRGVDVSQVAWQSKGDTP 95
Query: 117 TGTCAVCVVGGERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYIAGFFLTVSPESIQ 176
+ C + G R++V + ++ + ++ ++ + K+ +I G + + +Q
Sbjct: 96 SSCCIINNSNGNRTIVLHDTSLPDVSATDFEKVDL----TQFKWIHIEGRNASEQVKMLQ 151
Query: 177 MVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGWET-- 234
+ H + + +S E RE + Y D VF ++ A+ E
Sbjct: 152 RIDAHNTRQPPEQKIRVSVEV--EKPREELFQLFGYGDVVFVSKDVAKHLGFQSAEEALR 209
Query: 235 ---DNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDT 291
V + A+ + W + +GAD + DGK L P ++VDT
Sbjct: 210 GLYGRVRKGAVLVCAWAE------------EGAD--ALGPDGK--LLHSDAFPPPRVVDT 253
Query: 292 NGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAA 323
GAGD F + L Q + V++ +R GC A
Sbjct: 254 LGAGDTFNASVIFSLSQGRSVQEALRFGCQVA 285
>pdb|3NBV|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With Amp-Pnp
And Fructose
pdb|3NBV|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With Amp-Pnp
And Fructose
pdb|3NBW|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrazole Compound
pdb|3NBW|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrazole Compound
pdb|3NC2|A Chain A, X-Ray Structure Of Ketohexokinase With A Quinazoline
pdb|3NC2|B Chain B, X-Ray Structure Of Ketohexokinase With A Quinazoline
pdb|3NC9|A Chain A, X-Ray Structure Of Ketohexokinase Complexed With An
Indazole Compound
pdb|3NC9|B Chain B, X-Ray Structure Of Ketohexokinase Complexed With An
Indazole Compound
pdb|3NCA|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A Thieno
Pyridinol Compound
pdb|3NCA|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A Thieno
Pyridinol Compound
pdb|3RO4|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With An
Indazole Compound Derivative
pdb|3RO4|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With An
Indazole Compound Derivative
pdb|3Q92|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 1
pdb|3Q92|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 1
pdb|3QA2|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 2
pdb|3QA2|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 2
pdb|3QAI|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 3
pdb|3QAI|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 3
Length = 313
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 58/272 (21%), Positives = 107/272 (39%), Gaps = 35/272 (12%)
Query: 61 GGATQNSIKVAQWMLQIPGA-TSYIGCIGKDKFGEEMKKNSTAAGVNVK---YYEDESAP 116
GG NS V L + GA +++G + + + + GV+V + P
Sbjct: 55 GGNASNSCTV----LSLLGAPCAFMGSMAPGHVADFLVADFRRRGVDVSQVAWQSKGDTP 110
Query: 117 TGTCAVCVVGGERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYIAGFFLTVSPESIQ 176
+ C + G R++V + ++ + ++ ++ + K+ +I G + + +Q
Sbjct: 111 SSCCIINNSNGNRTIVLHDTSLPDVSATDFEKVDL----TQFKWIHIEGRNASEQVKMLQ 166
Query: 177 MVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGWET-- 234
+ H + + +S E RE + Y D VF ++ A+ E
Sbjct: 167 RIDAHNTRQPPEQKIRVSVEV--EKPREELFQLFGYGDVVFVSKDVAKHLGFQSAEEALR 224
Query: 235 ---DNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDT 291
V + A+ + W + +GAD + DGK L P ++VDT
Sbjct: 225 GLYGRVRKGAVLVCAWAE------------EGAD--ALGPDGK--LLHSDAFPPPRVVDT 268
Query: 292 NGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAA 323
GAGD F + L Q + V++ +R GC A
Sbjct: 269 LGAGDTFNASVIFSLSQGRSVQEALRFGCQVA 300
>pdb|4DU5|A Chain A, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
pdb|4DU5|B Chain B, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
pdb|4DU5|C Chain C, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
pdb|4DU5|D Chain D, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
Length = 336
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 79/204 (38%), Gaps = 30/204 (14%)
Query: 150 EIWSIVEKAKYYYIAGFFLTVSPESIQMVAE-----HAAAKNKVFMMNLSAPFIC--EFF 202
E W + A++ + G F +S ++ + AA ++ F NL E
Sbjct: 147 EAWLL--SARHLHATGVFPAISATTLPAARKTXDLXRAAGRSVSFDPNLRPTLWATPELX 204
Query: 203 REPQEKALPYMDYVFGNETEARTFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQ 262
R+ D+V E R E ++++ + G ++ V+
Sbjct: 205 RDAINDLATRADWVLPGXEEGRFLTG---------ETTPEGVARFYRQLGA--KLVVVKL 253
Query: 263 GADPVVV---AEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTG 319
GA+ A G+V FPV ++VDT GAGD F G +S L+ V + V+ G
Sbjct: 254 GAEGAYFDGEAGSGRVAGFPV-----AEVVDTVGAGDGFAVGVISALLDGLGVPEAVKRG 308
Query: 320 CYAANVVIQRSGCT--YPPKPEFN 341
+ +Q G + P + E N
Sbjct: 309 AWIGARAVQVLGDSEGLPTRAELN 332
>pdb|2PKF|A Chain A, Crystal Structure Of M Tuberculosis Adenosine Kinase (Apo)
pdb|2PKF|B Chain B, Crystal Structure Of M Tuberculosis Adenosine Kinase (Apo)
pdb|2PKK|A Chain A, Crystal Structure Of M Tuberculosis Adenosine Kinase
Complexed With 2- Fluro Adenosine
pdb|2PKN|A Chain A, Crystal Structure Of M Tuberculosis Adenosine Kinase
Complexed With Amp-Pcp (Non-Hydrolyzable Atp Analog)
pdb|2PKM|A Chain A, Crystal Structure Of M Tuberculosis Adenosine Kinase
Complexed With Adenosine
Length = 334
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 17/119 (14%)
Query: 215 YVFGNETEARTFAKVHGW-ETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDG 273
Y+F N+ E GW E D + +I L+++ T+ +G D +V DG
Sbjct: 201 YLFTNDYEWDLLLSKTGWSEADVMAQIDLRVT------------TLGPKGVD--LVEPDG 246
Query: 274 KVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQRSGC 332
V ++P+ D G GDAF GFL+ +E + G A +V++ +G
Sbjct: 247 TT--IHVGVVPETSQTDPTGVGDAFRAGFLTGRSAGLGLERSAQLGSLVAVLVLESTGT 303
>pdb|2HQQ|A Chain A, Crystal Structure Of Human Ketohexokinase Complexed To
Different Sugar Molecules
pdb|2HW1|A Chain A, Crystal Structure Of Human Ketohexokinase Complexed To
Different Sugar Molecules
Length = 298
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 262 QGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCY 321
+GAD + DGK L P ++VDT GAGD F + L Q + V++ +R GC
Sbjct: 228 EGAD--ALGPDGK--LLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQ 283
Query: 322 AAN 324
A
Sbjct: 284 VAG 286
>pdb|2HLZ|A Chain A, Crystal Structure Of Human Ketohexokinase (Casp Target)
pdb|2HLZ|B Chain B, Crystal Structure Of Human Ketohexokinase (Casp Target)
pdb|2HLZ|C Chain C, Crystal Structure Of Human Ketohexokinase (Casp Target)
pdb|2HLZ|D Chain D, Crystal Structure Of Human Ketohexokinase (Casp Target)
Length = 312
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 262 QGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCY 321
+GAD + DGK L P ++VDT GAGD F + L Q + V++ +R GC
Sbjct: 242 EGAD--ALGPDGK--LLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQ 297
Query: 322 AAN 324
A
Sbjct: 298 VAG 300
>pdb|3RY7|A Chain A, Crystal Sructure Of Sa239
Length = 304
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 285 KEKLVDTNGAGDAFVGGFLSQLVQEKP-VEDCVRTGCYAANVVIQRSGC 332
K +DT AGD F+G F+S+L + + + D + G A+++ +Q+ G
Sbjct: 243 KVNAIDTTAAGDTFIGAFVSRLNKSQDNLADAIDFGNKASSLTVQKHGA 291
>pdb|3B1N|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Adp-Mizoribine
pdb|3B1N|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Adp-Mizoribine
pdb|3B1O|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Ligand-Free Form
pdb|3B1O|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Ligand-Free Form
pdb|3B1P|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Adp-Inosine
pdb|3B1Q|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|C Chain C, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|D Chain D, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|E Chain E, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|F Chain F, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
Length = 326
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 53/141 (37%), Gaps = 28/141 (19%)
Query: 170 VSPESIQMVAEHAAAKNKVFMMNLSAPFICE-------FFREPQEKALPYMDYVFGNETE 222
V P+ Q + +H + PFI + F +++ Y+ N+ E
Sbjct: 141 VGPDGFQGMVQHTEE-----LAQAGVPFIFDPGQGLPLFDGATLRRSIELATYIAVNDYE 195
Query: 223 ARTFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVIL 282
A+ GW D EIA ++ +IT+G + + P +
Sbjct: 196 AKLVCDKTGWSED---EIASRVQAL-----------IITRGEHGATIRHRDGTEQIPAV- 240
Query: 283 LPKEKLVDTNGAGDAFVGGFL 303
E+++D G GDAF GG L
Sbjct: 241 -RAERVIDPTGCGDAFRGGLL 260
>pdb|3B1R|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|C Chain C, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|D Chain D, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|E Chain E, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|F Chain F, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
Length = 320
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 53/141 (37%), Gaps = 28/141 (19%)
Query: 170 VSPESIQMVAEHAAAKNKVFMMNLSAPFICE-------FFREPQEKALPYMDYVFGNETE 222
V P+ Q + +H + PFI + F +++ Y+ N+ E
Sbjct: 149 VGPDGFQGMVQHTEE-----LAQAGVPFIFDPGQGLPLFDGATLRRSIELATYIAVNDYE 203
Query: 223 ARTFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVIL 282
A+ GW D EIA ++ +IT+G + + P +
Sbjct: 204 AKLVCDKTGWSED---EIASRVQAL-----------IITRGEHGATIRHRDGTEQIPAVR 249
Query: 283 LPKEKLVDTNGAGDAFVGGFL 303
E+++D G GDAF GG L
Sbjct: 250 --AERVIDPTGCGDAFRGGLL 268
>pdb|3HJ6|A Chain A, Structure Of Halothermothrix Orenii Fructokinase (Frk)
pdb|3HJ6|B Chain B, Structure Of Halothermothrix Orenii Fructokinase (Frk)
Length = 327
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 268 VVAEDGKVKLFPVILLP--KEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANV 325
V+A DG+ +I +P E VD GAGDAF GF+ L+ V+ ++ G A
Sbjct: 249 VIASDGE----EIIRIPAFSEDAVDVTGAGDAFWSGFICGLLDGYTVKRSIKLGNGVAAF 304
Query: 326 VIQRSGCTYP 335
I+ G P
Sbjct: 305 KIRGVGALSP 314
>pdb|3KZH|A Chain A, Crystal Structure Of A Putative Sugar Kinase From
Clostridium Perfringens
pdb|3KZH|B Chain B, Crystal Structure Of A Putative Sugar Kinase From
Clostridium Perfringens
Length = 328
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 61/291 (20%), Positives = 113/291 (38%), Gaps = 52/291 (17%)
Query: 61 GGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDES------ 114
GG +N +A+ ++ T++ +G D+ G+ + ++S G Y+ D+S
Sbjct: 42 GGVCRN---IAENXARVGVNTNFXSILGNDEHGKSIVEHSKKIG----YHXDDSXVIEGG 94
Query: 115 -APTGTCAVCVVGGERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYIAGFFLTVSPE 173
PT + G S +A+ + ++ + I E A+Y + + +PE
Sbjct: 95 STPTYLAILDENGEXVSAIADXKSIGAXNTDFIDSKR--EIFENAEYTVLD----SDNPE 148
Query: 174 SIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKA------LPYMDYVFGNETEARTFA 227
+ + ++ K + +SA EKA + + N EA A
Sbjct: 149 IXEYLLKNFKDKTNFILDPVSA-----------EKASWVKHLIKDFHTIKPNRHEAEILA 197
Query: 228 KVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAED---GKVKLFPVILLP 284
+TD++ +K S + G K I+ AD + + GK+K V
Sbjct: 198 GFPITDTDDL----IKASNYFLGLGIKK--VFISLDADGIFYNDGVSCGKIKATEV---- 247
Query: 285 KEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQRSGCTYP 335
+ + GAGD+FV G + P+ED V+ +N+ I +P
Sbjct: 248 --DVKNVTGAGDSFVAGLGYGYXNKXPIEDIVKFAXTXSNITISHEETIHP 296
>pdb|3BF5|A Chain A, Crystal Structure Of Putative Ribokinase (10640157) From
Thermoplasma Acidophilum At 1.91 A Resolution
pdb|3BF5|B Chain B, Crystal Structure Of Putative Ribokinase (10640157) From
Thermoplasma Acidophilum At 1.91 A Resolution
Length = 306
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Query: 255 KRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVED 314
K T++T G + DGK FP I P DT GAGD+F G L + +E
Sbjct: 209 KVTTIVTNGERGSSLFXDGKKYDFPAI--PSSG--DTVGAGDSFRAGLYLALYNRRSIEK 264
Query: 315 CVRTGCYAANVVIQ 328
G A+ VI
Sbjct: 265 GXIYGTIIAHHVID 278
>pdb|2QHP|A Chain A, Crystal Structure Of Fructokinase (Np_810670.1) From
Bacteroides Thetaiotaomicron Vpi-5482 At 1.80 A
Resolution
Length = 296
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 61/145 (42%), Gaps = 11/145 (7%)
Query: 187 KVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGWETDNVEEIALKISQ 246
K+F +NL F + +E ++ + + N+ E T ++ G+ I L+
Sbjct: 149 KIFDINLRQDF---YTKEVLRESFKRCNILKINDEELVTISRXFGYPG-----IDLQDKC 200
Query: 247 WPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQL 306
W + + + ++T G + V G V PK + DT GAGD+F F + +
Sbjct: 201 WILLAKYNLKXLILTCGINGSYVFTPGVVSFQET---PKVPVADTVGAGDSFTAAFCASI 257
Query: 307 VQEKPVEDCVRTGCYAANVVIQRSG 331
+ K V + + + V +SG
Sbjct: 258 LNGKSVPEAHKLAVEVSAYVCTQSG 282
>pdb|3KD6|A Chain A, Crystal Structure Of Nucleoside Kinase From Chlorobium
Tepidum In Complex With Amp
pdb|3KD6|B Chain B, Crystal Structure Of Nucleoside Kinase From Chlorobium
Tepidum In Complex With Amp
Length = 313
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 13/105 (12%)
Query: 204 EPQEKALPYMDYVFGNETEARTFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQG 263
E +K L +D N++EAR + + +K ++ + G + +I +G
Sbjct: 160 EELKKVLARVDVFIVNDSEARLLSG---------DPNLVKTARIIREXG--PKTLIIKKG 208
Query: 264 ADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQ 308
++ D + F P E + D GAGD F GGF+ L +
Sbjct: 209 EHGALLFTDNGI--FAAPAFPLESIYDPTGAGDTFAGGFIGHLAR 251
>pdb|2V78|A Chain A, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase
pdb|2V78|B Chain B, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase
pdb|2V78|C Chain C, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase
pdb|2VAR|A Chain A, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase Complexed With 2-Keto-3-
Deoxygluconate
pdb|2VAR|B Chain B, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase Complexed With 2-Keto-3-
Deoxygluconate
pdb|2VAR|C Chain C, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase Complexed With 2-Keto-3-
Deoxygluconate
Length = 313
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 290 DTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQRSG 331
D GAGDA G F+S +Q K +E + G A+ +VI G
Sbjct: 252 DPTGAGDAMAGTFVSLYLQGKDIEYSLAHGIAASTLVITVRG 293
>pdb|2ABQ|A Chain A, Crystal Structure Of Fructose-1-Phosphate Kinase From
Bacillus Halodurans
pdb|2ABQ|B Chain B, Crystal Structure Of Fructose-1-Phosphate Kinase From
Bacillus Halodurans
Length = 306
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 259 VITQGADPVVVAEDGKVKLFPV------ILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPV 312
+I +G + ++V+ G LF + +P ++ ++ GAGD+ V GFL+ L + K +
Sbjct: 206 LIGEGIESILVSFAGDGALFASAEGXFHVNVPSGEVRNSVGAGDSVVAGFLAALQEGKSL 265
Query: 313 EDCV 316
ED V
Sbjct: 266 EDAV 269
>pdb|3GBU|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|C Chain C, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|D Chain D, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3IH0|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With
Amp-Pnp
pdb|3IH0|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With
Amp-Pnp
Length = 313
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 102/249 (40%), Gaps = 33/249 (13%)
Query: 61 GGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVK-YYEDESAPTGT 119
GGA N VA + ++ +S I +G D FGE + + + V+ + +DE TG
Sbjct: 33 GGAPAN---VAVGVSRLGVKSSLISKVGNDPFGEYLIEELSKENVDTRGIVKDEKKHTGI 89
Query: 120 CAVCVVGGERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYIAGFFLTVSP--ESIQM 177
V + G S + L Y + L W IVE+AK L +P E++
Sbjct: 90 VFVQLKGASPSFL--LYDDVAYFNXTLNDIN-WDIVEEAKIVNFGSVILARNPSRETVXK 146
Query: 178 VAEHAAAKNKV-FMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGWETDN 236
V + + + F +NL + +R +E+ + + E + V E
Sbjct: 147 VIKKIKGSSLIAFDVNLR----LDLWRGQEEEXIKVL------EESIKLADIVKASE--- 193
Query: 237 VEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKL--VDTNGA 294
EE+ +Q + G+ +T IT G + +K V+ +P + +DT GA
Sbjct: 194 -EEVLYLENQGVEVKGSX--LTAITLGPKGFRL-----IKNETVVDVPSYNVNPLDTTGA 245
Query: 295 GDAFVGGFL 303
GDAF L
Sbjct: 246 GDAFXAALL 254
>pdb|3EWM|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii
pdb|3EWM|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii
Length = 313
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 102/249 (40%), Gaps = 33/249 (13%)
Query: 61 GGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVK-YYEDESAPTGT 119
GGA N VA + ++ +S I +G D FGE + + + V+ + +DE TG
Sbjct: 33 GGAPAN---VAVGVSRLGVKSSLISKVGNDPFGEYLIEELSKENVDTRGIVKDEKKHTGI 89
Query: 120 CAVCVVGGERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYIAGFFLTVSP--ESIQM 177
V + G S + L Y + L W IVE+AK L +P E++
Sbjct: 90 VFVQLKGASPSFL--LYDDVAYFNXTLNDIN-WDIVEEAKIVNFGSVILARNPSRETVXK 146
Query: 178 VAEHAAAKNKV-FMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGWETDN 236
V + + + F +NL + +R +E+ + + E + V E
Sbjct: 147 VIKKIKGSSLIAFDVNLR----LDLWRGQEEEXIKVL------EESIKLADIVKASE--- 193
Query: 237 VEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKL--VDTNGA 294
EE+ +Q + G+ +T IT G + +K V+ +P + +DT GA
Sbjct: 194 -EEVLYLENQGVEVKGSX--LTAITLGPKGCRL-----IKNETVVDVPSYNVNPLDTTGA 245
Query: 295 GDAFVGGFL 303
GDAF L
Sbjct: 246 GDAFXAALL 254
>pdb|3PL2|A Chain A, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 1.89 A Resolution
pdb|3PL2|B Chain B, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 1.89 A Resolution
pdb|3PL2|C Chain C, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 1.89 A Resolution
pdb|3PL2|D Chain D, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 1.89 A Resolution
Length = 319
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 257 ITVITQGADPVVV-AEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDC 315
+ ++ QG V +D V++ P + +++ GAGDAF G L+ E P+E
Sbjct: 229 LAIVKQGPKGVXAXTKDETVEVPPFFV----DVINGLGAGDAFGGALCHGLLSEWPLEKV 284
Query: 316 VRTGCYAANVVIQRSGCT 333
+R A +V R C+
Sbjct: 285 LRFANTAGALVASRLECS 302
>pdb|2WM4|A Chain A, X-Ray Structure Of Mycobacterium Tuberculosis Cytochrome
P450 Cyp124 In Complex With Phytanic Acid
pdb|2WM5|A Chain A, X-Ray Structure Of The Substrate-Free Mycobacterium
Tuberculosis Cytochrome P450 Cyp124
Length = 435
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 15/103 (14%)
Query: 3 YEGILLGMGNPLLDISAVVDEEFLKKYDIKLNNAILAEDKHLPMYDELASKENVEYIAGG 62
+ ++LG G+P D++ DE DI LAED+ + +D+L S VE G
Sbjct: 200 WTNVILGFGDP--DLATDFDEFMQVSADIGAYATALAEDRRVNHHDDLTSSL-VEAEVDG 256
Query: 63 ATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGV 105
+S ++A + + + A G E +N+ GV
Sbjct: 257 ERLSSREIASFFILLVVA------------GNETTRNAITHGV 287
>pdb|3LJS|A Chain A, Crystal Structure Of Fructokinase From Xylella Fastidiosa
pdb|3LJS|B Chain B, Crystal Structure Of Fructokinase From Xylella Fastidiosa
pdb|3LKI|A Chain A, Crystal Structure Of Fructokinase With Bound Atp From
Xylella Fastidiosa
pdb|3LKI|B Chain B, Crystal Structure Of Fructokinase With Bound Atp From
Xylella Fastidiosa
Length = 338
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 9/59 (15%)
Query: 254 HKRITVITQGADPV---VVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQE 309
++ ++T A PV G+V F V ++ D+N AGDAFVGG L Q+
Sbjct: 223 RAQLLLVTDAAGPVHWYTRTAGGEVPTFRV------QVQDSNAAGDAFVGGXLYTFAQQ 275
>pdb|3I3Y|A Chain A, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3I3Y|B Chain B, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3I3Y|C Chain C, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3I3Y|D Chain D, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3IKH|A Chain A, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
pdb|3IKH|B Chain B, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
pdb|3IKH|C Chain C, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
pdb|3IKH|D Chain D, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
Length = 299
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 259 VITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAF 298
VITQGA + ++G+ + P + P E L DT GAGD F
Sbjct: 200 VITQGAAGAWLVQEGQRQFCPAV--PAEAL-DTTGAGDTF 236
>pdb|3GA2|A Chain A, Crystal Structure Of The Endonuclease_v (Bsu36170) From
Bacillus Subtilis, Northeast Structural Genomics
Consortium Target Sr624
Length = 246
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 100 STAAGVNVKYYEDESAPTGTCAVCVVGGE 128
+T AGV++ Y+E + P G C + V+ +
Sbjct: 40 NTTAGVDLAYWEQDGEPYGVCCIIVIDAD 68
>pdb|2OAJ|A Chain A, Crystal Structure Of Sro7 From S. Cerevisiae
Length = 902
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%)
Query: 207 EKALPYMDYVFGNETEARTFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADP 266
E +P DY+ + T A +KV+ +N E +L IS + G ++ +T+I G P
Sbjct: 255 EINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTP 314
>pdb|2DCN|A Chain A, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|B Chain B, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|C Chain C, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|D Chain D, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|E Chain E, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|F Chain F, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|G Chain G, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|H Chain H, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|I Chain I, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|J Chain J, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|K Chain K, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|L Chain L, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|1WYE|A Chain A, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|B Chain B, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|C Chain C, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|D Chain D, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|E Chain E, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|F Chain F, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
Length = 311
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 249 KASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQ 308
KA + I V+ G +V DGK +P E D GAGDA G FLS +
Sbjct: 212 KAFSDYAEIIVMKLGPKGAIVYYDGKKYYSSGYQVPVE---DVTGAGDALGGTFLSLYYK 268
Query: 309 EKPVEDCVRTGCYAA--NVVIQ 328
+E + A+ NV+I+
Sbjct: 269 GFEMEKALDYAIVASTLNVMIR 290
>pdb|3OCA|A Chain A, Crystal Structure Of Peptide Deformylase From Ehrlichia
Chaffeensis
pdb|3OCA|B Chain B, Crystal Structure Of Peptide Deformylase From Ehrlichia
Chaffeensis
Length = 209
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 16/116 (13%)
Query: 118 GTCAVCVVGGERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYI-AGFFLTVSPESIQ 176
G AV V +R LV N+ E +I ++ +K + Y + G + ++P+ +
Sbjct: 67 GLAAVQVGVHKRILVMNVP------EEFEDSEDIENVEDKIEGYELYGGPYCIINPKIVD 120
Query: 177 MVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGW 232
+ E K LS P ++ PQ A+ Y+DY GNE K GW
Sbjct: 121 ISQEKVKLKEGC----LSVPGYFDYIVRPQRIAVQYLDY-NGNE----CIIKAQGW 167
>pdb|3U04|A Chain A, Crystal Structure Of Peptide Deformylase From Ehrlichia
Chaffeensis In Complex With Actinonin
Length = 190
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 16/116 (13%)
Query: 118 GTCAVCVVGGERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYI-AGFFLTVSPESIQ 176
G AV V +R LV N+ E +I ++ +K + Y + G + ++P+ +
Sbjct: 48 GLAAVQVGVHKRILVMNVP------EEFEDSEDIENVEDKIEGYELYGGPYCIINPKIVD 101
Query: 177 MVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGW 232
+ E K LS P ++ PQ A+ Y+DY GNE K GW
Sbjct: 102 ISQEKVKLKEGC----LSVPGYFDYIVRPQRIAVQYLDY-NGNE----CIIKAQGW 148
>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum With Loop 690-700 Ordered
Length = 265
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 123 CVVGGERSLVANLSAANCYKSEHLKR 148
C+ G E + ++ L ANCYK EH R
Sbjct: 48 CMKGYEPTKISALYVANCYKGEHKDR 73
>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
pdb|3CH3|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
Length = 265
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 123 CVVGGERSLVANLSAANCYKSEHLKR 148
C+ G E + ++ L ANCYK EH R
Sbjct: 47 CMKGYEPTKISALYVANCYKGEHKDR 72
>pdb|4GM6|A Chain A, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
pdb|4GM6|B Chain B, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
pdb|4GM6|C Chain C, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
pdb|4GM6|D Chain D, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
pdb|4GM6|E Chain E, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
pdb|4GM6|F Chain F, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
Length = 351
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 38/188 (20%), Positives = 78/188 (41%), Gaps = 28/188 (14%)
Query: 154 IVEKAKYYYIAGFFLTVSPESIQMVAE--HAAAKNKV---FMMNLSAPFI-CEFFREPQE 207
+++ + +++G + +S ++MV + A +N + F MN A E + +
Sbjct: 147 LLKGIRVLHVSGITIALSTFWLEMVVKIIREAKRNGIKISFDMNYRAKLWELEAAKRAYQ 206
Query: 208 KALPYMDYVFGNETEARTFAKVHGWETDNVEEIALKI--------SQWPKASGTHKRIT- 258
+ LP +DY + +A F ++ TD + + K ++ S +H +
Sbjct: 207 QLLPLVDYCSAGQMDAVAFFEISSETTDYYQAMHDKYPNIELFYATKRTVISASHHLLQG 266
Query: 259 -VITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVR 317
+ TQG E + ++P+ VD G GDA+ L ++ E ++ V+
Sbjct: 267 HLWTQGE----CWESEEYAIYPI--------VDRVGGGDAYTAAVLHGILSEWRPDETVK 314
Query: 318 TGCYAANV 325
AA +
Sbjct: 315 FATAAAGL 322
>pdb|2I3F|A Chain A, Crystal Structure Of A Glycolipid Transfer-Like Protein
From Galdieria Sulphuraria
pdb|2I3F|B Chain B, Crystal Structure Of A Glycolipid Transfer-Like Protein
From Galdieria Sulphuraria
pdb|2Q52|A Chain A, Ensemble Refinement Of The Crystal Structure Of A
Glycolipid Transfer- Like Protein From Galdieria
Sulphuraria
pdb|2Q52|B Chain B, Ensemble Refinement Of The Crystal Structure Of A
Glycolipid Transfer- Like Protein From Galdieria
Sulphuraria
Length = 224
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 247 WPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKE--KLVDTNGAG 295
W K + + +I V V EDGKV L P + KE ++VD G+G
Sbjct: 2 WNKKNEEKEDFGIIVILWKQVTVKEDGKVPLEPFLTAAKEVLRVVDAFGSG 52
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,669,997
Number of Sequences: 62578
Number of extensions: 442417
Number of successful extensions: 1500
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1411
Number of HSP's gapped (non-prelim): 68
length of query: 341
length of database: 14,973,337
effective HSP length: 100
effective length of query: 241
effective length of database: 8,715,537
effective search space: 2100444417
effective search space used: 2100444417
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)