Query 019402
Match_columns 341
No_of_seqs 136 out of 1666
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 09:10:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019402.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019402hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00247 adenosine kinase; Pro 100.0 1.1E-52 2.4E-57 384.8 37.1 338 3-340 4-342 (345)
2 PLN02548 adenosine kinase 100.0 4.8E-52 1E-56 379.0 34.7 331 10-340 1-331 (332)
3 KOG2854 Possible pfkB family c 100.0 1E-51 2.2E-56 353.1 31.2 336 5-340 7-342 (343)
4 PLN02813 pfkB-type carbohydrat 100.0 2.5E-48 5.4E-53 361.8 31.0 312 4-334 69-393 (426)
5 PRK15074 inosine/guanosine kin 100.0 5.4E-48 1.2E-52 357.1 33.0 315 3-335 32-417 (434)
6 PLN02379 pfkB-type carbohydrat 100.0 1.3E-47 2.8E-52 351.7 33.0 313 4-335 19-344 (367)
7 cd01168 adenosine_kinase Adeno 100.0 9.2E-47 2E-51 341.4 33.3 310 5-335 2-312 (312)
8 PRK11142 ribokinase; Provision 100.0 3.1E-47 6.6E-52 343.8 22.7 293 5-340 3-299 (306)
9 PTZ00292 ribokinase; Provision 100.0 3.3E-46 7.2E-51 339.7 24.4 299 4-340 15-320 (326)
10 cd01174 ribokinase Ribokinase 100.0 8.9E-46 1.9E-50 332.1 26.4 285 6-333 1-287 (292)
11 PLN02341 pfkB-type carbohydrat 100.0 1.6E-43 3.4E-48 334.2 29.5 300 3-340 71-403 (470)
12 cd01944 YegV_kinase_like YegV- 100.0 1.2E-43 2.6E-48 317.7 26.6 284 6-331 1-289 (289)
13 PRK09850 pseudouridine kinase; 100.0 6.9E-44 1.5E-48 322.6 23.8 295 1-339 1-301 (313)
14 cd01945 ribokinase_group_B Rib 100.0 1.7E-43 3.8E-48 315.9 25.8 277 6-333 1-279 (284)
15 PLN02967 kinase 100.0 5.6E-43 1.2E-47 330.3 27.1 312 4-340 196-541 (581)
16 PLN02323 probable fructokinase 100.0 8.8E-43 1.9E-47 317.7 26.3 295 2-340 8-321 (330)
17 TIGR02152 D_ribokin_bact ribok 100.0 1.6E-42 3.5E-47 311.1 26.0 288 11-340 1-292 (293)
18 cd01942 ribokinase_group_A Rib 100.0 2.3E-42 5.1E-47 307.9 26.6 277 6-333 1-279 (279)
19 COG0524 RbsK Sugar kinases, ri 100.0 1.3E-42 2.8E-47 314.3 25.3 295 6-339 1-302 (311)
20 PRK09434 aminoimidazole ribosi 100.0 4.4E-42 9.6E-47 309.8 28.0 285 3-340 1-303 (304)
21 PF00294 PfkB: pfkB family car 100.0 3.8E-43 8.3E-48 316.3 19.9 291 4-335 1-297 (301)
22 cd01166 KdgK 2-keto-3-deoxyglu 100.0 5.2E-42 1.1E-46 307.9 26.8 283 6-332 1-293 (294)
23 PRK09954 putative kinase; Prov 100.0 3.3E-42 7.2E-47 317.3 25.4 289 5-337 58-350 (362)
24 cd01167 bac_FRK Fructokinases 100.0 9.1E-42 2E-46 306.5 27.3 278 6-332 1-294 (295)
25 cd01947 Guanosine_kinase_like 100.0 1.2E-41 2.7E-46 301.0 26.1 263 6-332 1-264 (265)
26 cd01172 RfaE_like RfaE encodes 100.0 4.5E-42 9.8E-47 309.8 23.5 292 6-336 1-298 (304)
27 cd01939 Ketohexokinase Ketohex 100.0 1.5E-41 3.2E-46 304.3 25.9 278 6-332 1-289 (290)
28 TIGR03828 pfkB 1-phosphofructo 100.0 7.1E-42 1.5E-46 308.5 23.9 289 8-340 3-295 (304)
29 cd01940 Fructoselysine_kinase_ 100.0 3.1E-41 6.7E-46 298.3 26.3 261 6-332 1-263 (264)
30 TIGR02198 rfaE_dom_I rfaE bifu 100.0 1.3E-41 2.8E-46 308.3 23.6 298 3-340 6-310 (315)
31 PLN02543 pfkB-type carbohydrat 100.0 1.5E-41 3.2E-46 317.9 24.3 313 4-341 125-484 (496)
32 cd01943 MAK32 MAK32 kinase. M 100.0 2.2E-41 4.7E-46 307.0 22.6 289 6-333 1-305 (328)
33 KOG2855 Ribokinase [Carbohydra 100.0 2.3E-41 5E-46 293.5 20.8 298 3-341 8-321 (330)
34 PRK09513 fruK 1-phosphofructok 100.0 8.4E-41 1.8E-45 302.4 24.8 295 1-340 1-299 (312)
35 cd01941 YeiC_kinase_like YeiC- 100.0 1.2E-40 2.6E-45 298.3 24.7 283 6-329 1-288 (288)
36 PRK10294 6-phosphofructokinase 100.0 1.1E-40 2.4E-45 301.2 24.0 291 6-338 4-298 (309)
37 PRK13508 tagatose-6-phosphate 100.0 4.2E-40 9.1E-45 297.4 24.5 288 6-336 2-293 (309)
38 cd01164 FruK_PfkB_like 1-phosp 100.0 5.9E-40 1.3E-44 293.8 25.1 282 6-332 2-288 (289)
39 TIGR03168 1-PFK hexose kinase, 100.0 5E-40 1.1E-44 296.3 23.9 289 8-340 3-295 (303)
40 PRK09813 fructoselysine 6-kina 100.0 7.3E-40 1.6E-44 288.7 24.0 257 6-332 2-259 (260)
41 COG1105 FruK Fructose-1-phosph 100.0 1.4E-39 3E-44 282.6 23.6 290 6-338 2-295 (310)
42 TIGR01231 lacC tagatose-6-phos 100.0 1.7E-39 3.8E-44 293.3 24.8 288 7-336 2-293 (309)
43 PRK11316 bifunctional heptose 100.0 1.5E-37 3.3E-42 296.2 22.9 296 4-339 10-307 (473)
44 cd01946 ribokinase_group_C Rib 100.0 3.1E-36 6.8E-41 268.1 25.1 266 6-332 1-275 (277)
45 PLN02630 pfkB-type carbohydrat 100.0 4.3E-36 9.4E-41 271.0 23.4 255 3-333 10-278 (335)
46 cd01937 ribokinase_group_D Rib 100.0 2.4E-35 5.2E-40 259.1 25.4 251 6-328 1-254 (254)
47 KOG2947 Carbohydrate kinase [C 100.0 3.3E-32 7.2E-37 222.3 19.9 290 1-332 1-298 (308)
48 COG2870 RfaE ADP-heptose synth 100.0 1.1E-31 2.4E-36 234.9 19.0 295 4-338 10-305 (467)
49 cd00287 ribokinase_pfkB_like r 100.0 5E-29 1.1E-33 210.3 17.7 195 6-307 1-196 (196)
50 cd01173 pyridoxal_pyridoxamine 99.8 2.9E-19 6.2E-24 156.9 13.7 165 156-329 71-251 (254)
51 PRK12412 pyridoxal kinase; Rev 99.8 2.6E-18 5.7E-23 151.6 16.2 161 158-330 73-247 (268)
52 TIGR00097 HMP-P_kinase phospho 99.8 4.7E-18 1E-22 149.0 16.6 162 157-330 67-241 (254)
53 TIGR00687 pyridox_kin pyridoxa 99.8 1.6E-18 3.4E-23 154.8 13.6 163 155-327 72-254 (286)
54 PRK05756 pyridoxamine kinase; 99.8 2.6E-18 5.6E-23 153.3 13.9 166 155-330 72-256 (286)
55 PRK12413 phosphomethylpyrimidi 99.8 1.3E-17 2.7E-22 146.4 16.0 163 156-330 67-243 (253)
56 PRK06427 bifunctional hydroxy- 99.8 1.4E-17 3E-22 147.2 16.3 162 157-330 73-249 (266)
57 cd01169 HMPP_kinase 4-amino-5- 99.8 2.3E-17 5E-22 143.8 16.5 161 157-329 68-241 (242)
58 PRK07105 pyridoxamine kinase; 99.7 1.5E-17 3.3E-22 148.2 13.5 163 157-332 75-258 (284)
59 PRK08176 pdxK pyridoxal-pyrido 99.7 3.5E-17 7.7E-22 145.3 14.0 164 156-329 87-266 (281)
60 PRK08573 phosphomethylpyrimidi 99.7 4.9E-17 1.1E-21 153.3 14.9 151 171-329 82-244 (448)
61 PRK12616 pyridoxal kinase; Rev 99.7 1.7E-16 3.6E-21 140.3 14.4 161 157-329 74-249 (270)
62 PTZ00344 pyridoxal kinase; Pro 99.6 2.1E-14 4.5E-19 128.6 16.5 158 160-330 79-259 (296)
63 KOG3009 Predicted carbohydrate 99.6 1.7E-14 3.8E-19 128.8 13.4 244 6-328 342-599 (614)
64 PLN02898 HMP-P kinase/thiamin- 99.6 4.6E-14 1E-18 135.3 15.6 162 157-330 78-254 (502)
65 cd01171 YXKO-related B.subtili 99.6 6.4E-14 1.4E-18 123.0 14.8 162 153-330 73-236 (254)
66 PTZ00347 phosphomethylpyrimidi 99.6 8.9E-14 1.9E-18 133.4 16.3 163 154-329 294-478 (504)
67 PF08543 Phos_pyr_kin: Phospho 99.5 2.6E-13 5.6E-18 118.2 12.8 161 157-329 60-234 (246)
68 COG0351 ThiD Hydroxymethylpyri 99.5 5.9E-13 1.3E-17 113.7 14.0 149 171-328 83-244 (263)
69 PRK09517 multifunctional thiam 99.5 3.6E-13 7.7E-18 134.5 13.4 161 158-330 311-485 (755)
70 cd01170 THZ_kinase 4-methyl-5- 99.5 1.2E-12 2.5E-17 113.6 14.7 167 151-328 43-221 (242)
71 PRK14713 multifunctional hydro 99.5 8.1E-13 1.8E-17 127.3 13.4 158 158-327 99-270 (530)
72 PLN02978 pyridoxal kinase 99.4 2.2E-12 4.8E-17 115.9 14.0 162 158-329 87-267 (308)
73 TIGR00196 yjeF_cterm yjeF C-te 99.4 1.1E-11 2.5E-16 109.7 16.9 161 153-330 88-251 (272)
74 COG2240 PdxK Pyridoxal/pyridox 99.3 7E-11 1.5E-15 101.6 12.4 164 154-329 70-250 (281)
75 PTZ00493 phosphomethylpyrimidi 99.1 1.3E-09 2.9E-14 97.1 14.3 160 158-329 74-285 (321)
76 PRK09355 hydroxyethylthiazole 99.1 4.4E-09 9.5E-14 92.4 15.0 164 151-327 48-224 (263)
77 TIGR00694 thiM hydroxyethylthi 99.0 1.7E-08 3.8E-13 87.9 13.8 165 151-327 43-219 (249)
78 KOG2599 Pyridoxal/pyridoxine/p 98.6 7.4E-07 1.6E-11 75.5 10.5 163 155-328 79-262 (308)
79 PRK03979 ADP-specific phosphof 98.5 2.1E-05 4.5E-10 73.2 18.7 75 157-231 222-309 (463)
80 PRK14039 ADP-dependent glucoki 98.4 5.7E-05 1.2E-09 70.2 19.5 171 54-231 84-297 (453)
81 KOG2598 Phosphomethylpyrimidin 98.4 4.3E-06 9.3E-11 75.4 11.7 149 171-328 103-282 (523)
82 TIGR02045 P_fruct_ADP ADP-spec 98.3 9.9E-05 2.2E-09 68.5 19.2 77 155-231 207-295 (446)
83 PF04587 ADP_PFK_GK: ADP-speci 98.1 5.2E-05 1.1E-09 71.4 12.0 76 156-231 208-295 (444)
84 PRK14038 ADP-dependent glucoki 98.0 0.00032 6.9E-09 65.3 16.2 78 153-231 220-303 (453)
85 PF01256 Carb_kinase: Carbohyd 98.0 0.00018 3.8E-09 62.3 12.5 157 153-326 63-219 (242)
86 PF02110 HK: Hydroxyethylthiaz 98.0 0.00029 6.4E-09 60.6 13.6 161 150-321 42-213 (246)
87 PRK10565 putative carbohydrate 97.9 0.00033 7.2E-09 67.3 15.1 151 153-322 316-468 (508)
88 COG2145 ThiM Hydroxyethylthiaz 97.8 0.0014 3E-08 56.0 14.2 158 151-319 49-218 (265)
89 KOG3974 Predicted sugar kinase 97.6 0.0037 8.1E-08 53.2 14.1 165 153-332 97-270 (306)
90 cd01938 ADPGK_ADPPFK ADP-depen 96.7 0.031 6.8E-07 52.6 12.6 170 55-231 100-289 (445)
91 COG0063 Predicted sugar kinase 95.7 0.33 7.2E-06 43.0 12.9 138 155-309 99-239 (284)
92 COG4809 Archaeal ADP-dependent 93.8 2.6 5.5E-05 38.6 13.4 79 153-231 221-311 (466)
93 KOG4184 Predicted sugar kinase 92.9 1 2.2E-05 40.4 9.5 166 54-229 136-318 (478)
94 PRK10076 pyruvate formate lyas 91.2 0.88 1.9E-05 38.6 7.0 68 157-228 38-110 (213)
95 COG1180 PflA Pyruvate-formate 76.4 14 0.00031 32.3 7.8 81 157-244 83-168 (260)
96 TIGR01768 GGGP-family geranylg 69.6 17 0.00037 31.0 6.4 50 157-217 27-76 (223)
97 PF09314 DUF1972: Domain of un 68.4 26 0.00056 29.0 7.0 68 157-227 92-168 (185)
98 PRK04169 geranylgeranylglycery 65.4 24 0.00052 30.4 6.5 52 155-217 30-81 (232)
99 PF01118 Semialdhyde_dh: Semia 62.6 30 0.00065 26.1 6.0 39 153-197 62-100 (121)
100 TIGR00696 wecB_tagA_cpsF bacte 62.0 31 0.00067 28.3 6.4 45 173-217 35-79 (177)
101 PF03808 Glyco_tran_WecB: Glyc 61.3 34 0.00073 27.8 6.5 44 173-216 35-78 (172)
102 TIGR02494 PFLE_PFLC glycyl-rad 61.0 36 0.00078 30.3 7.2 56 159-218 127-182 (295)
103 PF01212 Beta_elim_lyase: Beta 60.0 28 0.00061 31.1 6.2 79 139-219 104-192 (290)
104 COG1159 Era GTPase [General fu 58.7 89 0.0019 27.9 8.8 109 78-188 3-116 (298)
105 PRK06598 aspartate-semialdehyd 58.6 1.1E+02 0.0024 28.4 9.9 96 80-197 3-101 (369)
106 COG0036 Rpe Pentose-5-phosphat 55.4 25 0.00054 29.8 4.8 52 157-218 84-137 (220)
107 PHA00438 hypothetical protein 54.0 10 0.00023 26.0 1.8 16 292-307 47-62 (81)
108 COG1922 WecG Teichoic acid bio 53.8 47 0.001 28.9 6.3 101 149-264 56-171 (253)
109 COG1618 Predicted nucleotide k 53.1 86 0.0019 25.5 7.1 103 91-193 20-137 (179)
110 PRK06901 aspartate-semialdehyd 52.3 1.8E+02 0.004 26.4 10.5 90 80-196 5-97 (322)
111 TIGR02493 PFLA pyruvate format 50.8 62 0.0013 27.6 6.8 60 159-220 67-126 (235)
112 PF04230 PS_pyruv_trans: Polys 49.4 71 0.0015 27.3 7.1 133 87-228 2-143 (286)
113 TIGR02491 NrdG anaerobic ribon 48.1 32 0.0007 27.4 4.2 59 159-217 65-127 (154)
114 PF10911 DUF2717: Protein of u 47.5 15 0.00032 25.2 1.8 19 290-308 45-63 (77)
115 COG1646 Predicted phosphate-bi 47.2 52 0.0011 28.2 5.4 41 156-197 40-81 (240)
116 PF02571 CbiJ: Precorrin-6x re 46.9 32 0.00069 30.0 4.3 31 234-270 115-145 (249)
117 PRK06702 O-acetylhomoserine am 46.8 1.5E+02 0.0032 28.2 9.1 38 157-194 147-185 (432)
118 KOG3040 Predicted sugar phosph 46.6 74 0.0016 26.9 6.0 112 66-188 27-140 (262)
119 PLN02383 aspartate semialdehyd 45.5 2.5E+02 0.0053 25.8 11.0 95 78-197 7-103 (344)
120 TIGR01745 asd_gamma aspartate- 45.2 1.9E+02 0.0042 26.8 9.2 96 80-197 2-100 (366)
121 COG0075 Serine-pyruvate aminot 45.0 1.9E+02 0.004 27.1 9.1 94 71-194 73-169 (383)
122 TIGR02826 RNR_activ_nrdG3 anae 44.6 89 0.0019 24.7 6.2 56 159-221 63-118 (147)
123 PRK09722 allulose-6-phosphate 44.3 48 0.001 28.5 4.9 52 157-217 82-135 (229)
124 COG0373 HemA Glutamyl-tRNA red 44.1 2.1E+02 0.0046 27.0 9.4 118 86-228 183-302 (414)
125 TIGR00334 5S_RNA_mat_M5 ribonu 42.7 1.7E+02 0.0036 24.0 7.4 84 157-244 22-105 (174)
126 PF04016 DUF364: Domain of unk 42.1 32 0.00069 27.2 3.3 45 151-197 56-100 (147)
127 PRK09028 cystathionine beta-ly 42.0 2.5E+02 0.0054 26.3 9.7 38 157-194 146-184 (394)
128 cd06533 Glyco_transf_WecG_TagA 41.5 1.1E+02 0.0024 24.7 6.6 44 173-216 33-76 (171)
129 PRK05968 hypothetical protein; 40.8 3E+02 0.0066 25.6 11.2 40 155-194 145-185 (389)
130 PF10087 DUF2325: Uncharacteri 40.7 74 0.0016 22.9 4.9 39 153-193 44-82 (97)
131 TIGR03609 S_layer_CsaB polysac 40.2 2.6E+02 0.0057 24.7 9.4 81 151-231 58-146 (298)
132 PRK06728 aspartate-semialdehyd 40.1 3E+02 0.0065 25.3 11.2 94 79-197 6-102 (347)
133 PRK06928 pyrroline-5-carboxyla 39.9 2.6E+02 0.0057 24.6 9.9 35 290-324 170-210 (277)
134 PF02659 DUF204: Domain of unk 39.4 69 0.0015 21.2 4.2 27 296-323 4-30 (67)
135 PF11469 Ribonucleas_3_2: Ribo 39.4 40 0.00086 24.7 3.0 32 288-319 52-84 (120)
136 COG0626 MetC Cystathionine bet 39.1 3E+02 0.0066 25.8 9.6 105 53-193 78-186 (396)
137 PF00070 Pyr_redox: Pyridine n 39.1 93 0.002 21.2 5.0 40 67-109 14-59 (80)
138 COG0136 Asd Aspartate-semialde 38.3 3.2E+02 0.0068 25.0 12.2 94 79-195 2-98 (334)
139 COG2085 Predicted dinucleotide 37.7 1.9E+02 0.0041 24.5 7.3 73 151-228 54-141 (211)
140 PRK07050 cystathionine beta-ly 37.2 3.5E+02 0.0076 25.2 10.5 38 157-194 150-188 (394)
141 PF01884 PcrB: PcrB family; I 37.1 60 0.0013 27.9 4.3 50 156-217 31-80 (230)
142 PRK05967 cystathionine beta-ly 37.0 3.6E+02 0.0078 25.3 10.0 38 157-194 149-187 (395)
143 KOG0174 20S proteasome, regula 36.7 20 0.00043 29.5 1.3 41 292-332 147-188 (224)
144 PRK00278 trpC indole-3-glycero 35.9 2.5E+02 0.0053 24.6 8.2 62 154-224 130-192 (260)
145 PRK08745 ribulose-phosphate 3- 35.9 70 0.0015 27.3 4.6 52 157-218 85-138 (223)
146 TIGR01769 GGGP geranylgeranylg 35.8 1.2E+02 0.0025 25.6 5.8 49 158-217 25-74 (205)
147 PRK08133 O-succinylhomoserine 35.5 3.6E+02 0.0078 25.1 9.8 38 157-194 146-184 (390)
148 PRK06444 prephenate dehydrogen 35.2 1.6E+02 0.0035 24.6 6.6 25 81-107 3-27 (197)
149 PRK08005 epimerase; Validated 34.7 72 0.0016 27.0 4.5 52 157-218 81-134 (210)
150 PLN02409 serine--glyoxylate am 34.1 3.7E+02 0.0081 25.0 9.7 48 60-111 67-114 (401)
151 PF00834 Ribul_P_3_epim: Ribul 33.9 77 0.0017 26.6 4.5 51 157-217 80-132 (201)
152 PRK08883 ribulose-phosphate 3- 33.6 78 0.0017 27.0 4.6 52 157-218 81-134 (220)
153 COG0206 FtsZ Cell division GTP 33.3 2.4E+02 0.0052 25.9 7.8 145 54-222 13-169 (338)
154 COG0219 CspR Predicted rRNA me 33.3 78 0.0017 25.2 4.1 101 62-178 14-116 (155)
155 cd02752 MopB_Formate-Dh-Na-lik 33.1 1E+02 0.0022 31.1 5.9 43 153-196 165-210 (649)
156 PF01113 DapB_N: Dihydrodipico 32.3 2.2E+02 0.0048 21.5 6.9 114 86-217 5-120 (124)
157 COG0345 ProC Pyrroline-5-carbo 32.3 3.5E+02 0.0077 23.8 11.1 186 84-323 4-205 (266)
158 COG2099 CobK Precorrin-6x redu 31.5 1E+02 0.0022 26.8 4.9 30 234-270 114-143 (257)
159 COG1660 Predicted P-loop-conta 31.1 1.5E+02 0.0032 26.1 5.7 68 153-224 19-95 (286)
160 COG0269 SgbH 3-hexulose-6-phos 30.8 3.4E+02 0.0073 23.1 8.8 61 156-221 79-141 (217)
161 PRK08091 ribulose-phosphate 3- 30.7 1E+02 0.0022 26.4 4.8 51 157-217 91-145 (228)
162 PRK05671 aspartate-semialdehyd 30.6 4.1E+02 0.0088 24.3 9.0 94 79-197 5-100 (336)
163 PRK11145 pflA pyruvate formate 30.2 1.2E+02 0.0025 26.1 5.2 60 159-220 72-131 (246)
164 COG4588 AcfC Accessory coloniz 29.6 3.5E+02 0.0075 22.9 9.1 66 155-229 18-85 (252)
165 COG0241 HisB Histidinol phosph 29.1 2.2E+02 0.0048 23.5 6.3 52 68-119 37-100 (181)
166 PRK13397 3-deoxy-7-phosphohept 29.0 1.7E+02 0.0036 25.6 5.8 81 172-265 65-161 (250)
167 COG0106 HisA Phosphoribosylfor 28.9 1.2E+02 0.0026 26.2 4.8 60 43-104 63-122 (241)
168 cd07044 CofD_YvcK Family of Co 28.7 2.2E+02 0.0047 25.8 6.7 76 92-168 101-185 (309)
169 cd02812 PcrB_like PcrB_like pr 28.6 1.9E+02 0.0041 24.7 6.0 50 156-217 24-75 (219)
170 COG0481 LepA Membrane GTPase L 28.2 2.5E+02 0.0054 27.2 7.1 55 75-136 339-393 (603)
171 PF00919 UPF0004: Uncharacteri 28.2 2.3E+02 0.0049 20.6 5.6 60 155-217 34-97 (98)
172 PF05368 NmrA: NmrA-like famil 28.1 3.3E+02 0.0072 22.8 7.7 40 152-191 59-99 (233)
173 KOG3361 Iron binding protein i 28.1 59 0.0013 25.0 2.5 35 290-324 85-120 (157)
174 COG4868 Uncharacterized protei 28.0 97 0.0021 28.0 4.2 52 75-126 104-156 (493)
175 cd02772 MopB_NDH-1_NuoG2 MopB_ 27.7 3.2E+02 0.0069 25.5 8.1 44 153-196 148-192 (414)
176 PF13460 NAD_binding_10: NADH( 27.6 1.8E+02 0.004 23.2 5.8 90 89-193 7-96 (183)
177 PRK09330 cell division protein 27.5 4.1E+02 0.009 24.8 8.5 73 151-223 91-171 (384)
178 PF10727 Rossmann-like: Rossma 27.1 68 0.0015 24.7 2.8 91 84-197 13-107 (127)
179 PRK08040 putative semialdehyde 26.5 5E+02 0.011 23.7 9.3 93 79-197 5-100 (336)
180 PRK03692 putative UDP-N-acetyl 26.5 3.8E+02 0.0082 23.2 7.6 66 150-216 54-134 (243)
181 PRK12491 pyrroline-5-carboxyla 26.3 4.5E+02 0.0097 23.1 9.4 35 290-324 170-209 (272)
182 cd00614 CGS_like CGS_like: Cys 25.9 5.1E+02 0.011 23.7 9.0 38 157-194 125-163 (369)
183 COG0157 NadC Nicotinate-nucleo 25.9 2E+02 0.0044 25.4 5.8 59 152-219 202-262 (280)
184 PRK07582 cystathionine gamma-l 25.9 5.2E+02 0.011 23.7 9.1 56 54-111 66-121 (366)
185 TIGR00065 ftsZ cell division p 25.4 3.5E+02 0.0075 24.9 7.6 66 152-217 96-168 (349)
186 PRK13018 cell division protein 25.3 3.2E+02 0.007 25.5 7.4 66 152-217 107-179 (378)
187 COG0240 GpsA Glycerol-3-phosph 25.2 3.5E+02 0.0076 24.7 7.3 66 150-220 64-137 (329)
188 PF11167 DUF2953: Protein of u 25.2 49 0.0011 20.9 1.5 19 291-309 2-20 (53)
189 COG1244 Predicted Fe-S oxidore 25.0 5.3E+02 0.012 23.5 8.5 86 161-246 106-201 (358)
190 PRK13600 putative ribosomal pr 25.0 2.2E+02 0.0048 20.1 4.9 37 156-195 28-64 (84)
191 PRK05939 hypothetical protein; 24.9 5.7E+02 0.012 23.9 9.9 38 157-194 131-169 (397)
192 COG0826 Collagenase and relate 24.8 5E+02 0.011 23.9 8.5 72 157-228 26-108 (347)
193 cd02766 MopB_3 The MopB_3 CD i 24.8 1.5E+02 0.0032 28.8 5.3 42 153-195 153-196 (501)
194 cd03822 GT1_ecORF704_like This 24.4 2.7E+02 0.0058 24.7 6.9 73 156-228 75-151 (366)
195 KOG0107 Alternative splicing f 24.3 1.4E+02 0.003 24.5 4.1 46 80-126 11-56 (195)
196 PRK15447 putative protease; Pr 24.1 5.2E+02 0.011 23.1 9.7 70 157-227 28-104 (301)
197 PRK04296 thymidine kinase; Pro 23.9 1.6E+02 0.0034 24.2 4.7 60 157-217 78-137 (190)
198 TIGR03128 RuMP_HxlA 3-hexulose 23.8 2.8E+02 0.0061 22.9 6.3 58 156-219 75-133 (206)
199 PF13986 DUF4224: Domain of un 23.5 1.2E+02 0.0026 18.7 2.9 23 217-244 2-24 (47)
200 KOG0256 1-aminocyclopropane-1- 23.3 2.5E+02 0.0053 26.5 6.0 22 171-192 244-265 (471)
201 COG2873 MET17 O-acetylhomoseri 23.3 5.8E+02 0.012 23.9 8.2 107 74-220 97-206 (426)
202 PRK13601 putative L7Ae-like ri 23.2 2.5E+02 0.0053 19.7 4.8 36 156-194 23-58 (82)
203 KOG1114 Tripeptidyl peptidase 22.8 1.3E+02 0.0028 31.5 4.4 52 244-303 72-127 (1304)
204 PF13380 CoA_binding_2: CoA bi 22.5 3.3E+02 0.0073 20.3 8.9 76 89-194 12-88 (116)
205 PF03668 ATP_bind_2: P-loop AT 22.5 3.4E+02 0.0073 24.2 6.6 42 153-198 19-65 (284)
206 PRK11880 pyrroline-5-carboxyla 22.1 3.9E+02 0.0084 23.1 7.1 34 290-323 168-206 (267)
207 PRK07810 O-succinylhomoserine 21.9 6.6E+02 0.014 23.5 9.9 38 157-194 155-193 (403)
208 KOG1615 Phosphoserine phosphat 21.6 1.1E+02 0.0024 25.6 3.2 101 151-264 9-114 (227)
209 TIGR02495 NrdG2 anaerobic ribo 21.3 4.5E+02 0.0097 21.3 8.6 38 158-196 63-100 (191)
210 PRK08134 O-acetylhomoserine am 21.3 7.1E+02 0.015 23.6 9.1 38 157-194 149-187 (433)
211 PRK13663 hypothetical protein; 21.1 4.6E+02 0.01 24.8 7.3 113 176-295 16-159 (493)
212 cd02201 FtsZ_type1 FtsZ is a G 21.1 6E+02 0.013 22.7 8.3 76 152-227 79-162 (304)
213 PRK05613 O-acetylhomoserine am 21.0 6.7E+02 0.015 23.8 8.9 37 158-194 156-193 (437)
214 PRK08249 cystathionine gamma-s 21.0 5.1E+02 0.011 24.2 8.0 38 157-194 149-187 (398)
215 PF14252 DUF4347: Domain of un 21.0 3.7E+02 0.0081 21.7 6.1 64 189-272 3-66 (165)
216 PRK08114 cystathionine beta-ly 20.9 6E+02 0.013 23.9 8.4 56 54-111 78-133 (395)
217 PF02492 cobW: CobW/HypB/UreG, 20.9 87 0.0019 25.4 2.5 68 157-224 84-154 (178)
218 PRK08247 cystathionine gamma-s 20.7 6.6E+02 0.014 23.0 10.5 38 157-194 136-174 (366)
219 TIGR01328 met_gam_lyase methio 20.7 6.9E+02 0.015 23.2 9.4 38 157-194 144-182 (391)
220 TIGR01325 O_suc_HS_sulf O-succ 20.5 6.8E+02 0.015 23.1 9.7 38 157-194 139-177 (380)
221 PF14748 P5CR_dimer: Pyrroline 20.3 1.8E+02 0.0039 21.4 3.9 34 290-323 11-49 (107)
222 COG0026 PurK Phosphoribosylami 20.1 4.1E+02 0.0089 24.7 6.7 81 83-181 3-84 (375)
223 cd02068 radical_SAM_B12_BD B12 20.0 2.6E+02 0.0056 21.0 4.9 65 156-224 38-102 (127)
224 PRK08057 cobalt-precorrin-6x r 20.0 1.3E+02 0.0028 26.2 3.6 22 88-109 9-30 (248)
No 1
>PTZ00247 adenosine kinase; Provisional
Probab=100.00 E-value=1.1e-52 Score=384.76 Aligned_cols=338 Identities=52% Similarity=0.895 Sum_probs=288.7
Q ss_pred CcceEEEecCceeeeEeecCHHHHHHcCCCCCceEEecCcccchHHHHhccCCceeecCchhHHHHHHHHHHhCCCC-ce
Q 019402 3 YEGILLGMGNPLLDISAVVDEEFLKKYDIKLNNAILAEDKHLPMYDELASKENVEYIAGGATQNSIKVAQWMLQIPG-AT 81 (341)
Q Consensus 3 ~~~~i~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~~lg~-~v 81 (341)
..++|+++|++++|++..++++|+.++.+.+|+.++.+..++|.++++....+....+||++.|+|+++++|..+|. ++
T Consensus 4 ~~~~i~~iG~~~~D~~~~v~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~A~~la~lg~~g~~~v 83 (345)
T PTZ00247 4 APKKLLGFGNPLLDISAHVSDEFLEKYGLELGSAILAEEKQLPIFEELESIPNVSYVPGGSALNTARVAQWMLQAPKGFV 83 (345)
T ss_pred CCceEEEECCceEEEEEeeCHHHHHHcCCCCCceeechHHHHHHHHHHHhccCceecCCCHHHHHHHHHHHHhcCCCCcE
Confidence 35699999999999999999999999999999999999889999999999999999999999999999998533455 99
Q ss_pred EEEEeecCCchhHHHHHHHHhcCCceeEeecCCCCcceEEEEEeCCeeceeecccccccCCcccCCCchhHhhhhcceEE
Q 019402 82 SYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVVGGERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYY 161 (341)
Q Consensus 82 ~li~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 161 (341)
.++|.||+|.+|+++++.|++.||++++++..+.+|+.+++.+++|+|+++.+++++..++++++......+.+++++++
T Consensus 84 ~~ig~vG~D~~G~~i~~~l~~~GVd~~~~~~~~~~Tg~~~i~v~~~~r~~~~~~ga~~~l~~~~i~~~~~~~~l~~~~~v 163 (345)
T PTZ00247 84 CYVGCVGDDRFAEILKEAAEKDGVEMLFEYTTKAPTGTCAVLVCGKERSLVANLGAANHLSAEHMQSHAVQEAIKTAQLY 163 (345)
T ss_pred EEEEEeccchhHHHHHHHHHHcCCeeeccccCCCCcEEEEEEEcCCCcccccCcchhhcCChHHcCcHHHHHHHhhCCEE
Confidence 99999999999999999999999999887656778999999887789988888888888888887752223468899999
Q ss_pred EEeccccccCHHHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCCCCcEEEcCHHHHHHHHhhcCCCCCCHHHHH
Q 019402 162 YIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGWETDNVEEIA 241 (341)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~ 241 (341)
|++++.+..+.+.+..+++.++++++++++|++.+.+.....+.+.++++++|++++|++|++.|++....+.++.++++
T Consensus 164 ~~~g~~~~~~~~~~~~~~~~a~~~g~~v~~d~~~~~~~~~~~~~~~~~l~~~Dil~~N~~Ea~~l~g~~~~~~~~~~~~~ 243 (345)
T PTZ00247 164 YLEGFFLTVSPNNVLQVAKHARESGKLFCLNLSAPFISQFFFERLLQVLPYVDILFGNEEEAKTFAKAMKWDTEDLKEIA 243 (345)
T ss_pred EEEEEEecccHHHHHHHHHHHHHcCCEEEEECCcHHHHHHHHHHHHHHHhhCCEEEeCHHHHHHHhhccCCCccCHHHHH
Confidence 99998666678999999999999999999998766543333455788999999999999999999874333345677888
Q ss_pred HHHhcCCCCCCCCccEEEEeeCCCCEEEEeCCeEEEEecccCCCCcccCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHH
Q 019402 242 LKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCY 321 (341)
Q Consensus 242 ~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~v~~~~~~~~~vvdttGAGDaf~a~~~~~l~~g~~~~~a~~~A~~ 321 (341)
+.+.++......+.+.||||+|++|+++++++..++++++++++.++||||||||+|+|||+++|++|+++++|+++|++
T Consensus 244 ~~l~~~~~~~~~~~~~vvvT~G~~G~~~~~~~~~~~~~~~~v~~~~vVDTtGAGDaF~agfl~~l~~g~~~~~al~~a~~ 323 (345)
T PTZ00247 244 ARIAMLPKYSGTRPRLVVFTQGPEPTLIATKDGVTSVPVPPLDQEKIVDTNGAGDAFVGGFLAQYANGKDIDRCVEAGHY 323 (345)
T ss_pred HHHHhccccccCCCCEEEEecCCCceEEEECCEEEEEeccccCCCCccCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 88754321012357899999999999999999888888877643468999999999999999999999999999999999
Q ss_pred HHhhhhhhccccCCCCCCC
Q 019402 322 AANVVIQRSGCTYPPKPEF 340 (341)
Q Consensus 322 ~aa~~v~~~g~~~p~~~e~ 340 (341)
+|+++|++.|+.+|..+.+
T Consensus 324 aAa~~v~~~Ga~~~~~~~~ 342 (345)
T PTZ00247 324 SAQVIIQHNGCTYPEKPPF 342 (345)
T ss_pred HHHHHHhccCCCCCCCCCC
Confidence 9999999999988776643
No 2
>PLN02548 adenosine kinase
Probab=100.00 E-value=4.8e-52 Score=378.98 Aligned_cols=331 Identities=85% Similarity=1.314 Sum_probs=283.1
Q ss_pred ecCceeeeEeecCHHHHHHcCCCCCceEEecCcccchHHHHhccCCceeecCchhHHHHHHHHHHhCCCCceEEEEeecC
Q 019402 10 MGNPLLDISAVVDEEFLKKYDIKLNNAILAEDKHLPMYDELASKENVEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGK 89 (341)
Q Consensus 10 iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~~lg~~v~li~~vG~ 89 (341)
+|++.+|++...+++|+++|+|.+|...+.+.+++|.+++.+...+....+||++.|++.+++++..+|.++.++|.+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~GG~~~Nva~~a~~l~~lg~~~~~ig~vG~ 80 (332)
T PLN02548 1 MGNPLLDISAVVDQDFLDKYDVKLNNAILAEEKHLPMYDELASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYMGCIGK 80 (332)
T ss_pred CCCceeEEEEecCHHHHHHcCCCCCceeechHHHHHHHHHHhccCCceecCCcHHHHHHHHHHHHhcCCCcEEEEEEEcC
Confidence 69999999999999999999999999999999999999999999999999999999998877765566899999999999
Q ss_pred CchhHHHHHHHHhcCCceeEeecCCCCcceEEEEEeCCeeceeecccccccCCcccCCCchhHhhhhcceEEEEeccccc
Q 019402 90 DKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVVGGERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYIAGFFLT 169 (341)
Q Consensus 90 D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~ 169 (341)
|.+|+++++.|+++||+++++...+.+|+.+++.+++|+|.++.+.++...++.+.+...+.++.+..+|++|++++.+.
T Consensus 81 D~~g~~i~~~L~~~gVd~~~~~~~~~~T~~~~i~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~ 160 (332)
T PLN02548 81 DKFGEEMKKCATAAGVNVHYYEDESTPTGTCAVLVVGGERSLVANLSAANCYKVEHLKKPENWALVEKAKFYYIAGFFLT 160 (332)
T ss_pred ChhHHHHHHHHHHcCCceeeeccCCCCCceEEEEEecCCceeeeccchhhcCCHHHhcChhhHhHHhhCCEEEEEEEEcc
Confidence 99999999999999999999865677899988888788888877766666666665553223456789999999998776
Q ss_pred cCHHHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCCCCcEEEcCHHHHHHHHhhcCCCCCCHHHHHHHHhcCCC
Q 019402 170 VSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGWETDNVEEIALKISQWPK 249 (341)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~~~ 249 (341)
.+++.+..+++.+++++.++++|++.+.|.....+.+.++++++|++++|++|+..+++....+.++.+++++.+.++.+
T Consensus 161 ~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~~~l~~~~~ 240 (332)
T PLN02548 161 VSPESIMLVAEHAAANNKTFMMNLSAPFICEFFKDQLMEALPYVDFLFGNETEARTFAKVQGWETEDVEEIALKISALPK 240 (332)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEECCChhHHHHhHHHHHHHHhhCCEEEecHHHHHHHhCccCCCcccHHHHHHHHHHhhh
Confidence 78888999999999999999999987776544556688899999999999999999987654444566666666643211
Q ss_pred CCCCCccEEEEeeCCCCEEEEeCCeEEEEecccCCCCcccCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhhhhhh
Q 019402 250 ASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQR 329 (341)
Q Consensus 250 ~~~~~~~~vvvt~G~~G~~~~~~~~~~~v~~~~~~~~~vvdttGAGDaf~a~~~~~l~~g~~~~~a~~~A~~~aa~~v~~ 329 (341)
..+.+++.+|||+|++|++++.+++.+++|++++++++++|||||||+|+|||++++++|+++++|+++|+++|+++|++
T Consensus 241 ~~g~~~~~vvvT~G~~G~~~~~~~~~~~~pa~~~~~~~vvDttGAGDaF~ag~l~~l~~g~~l~eal~~a~aaAa~~v~~ 320 (332)
T PLN02548 241 ASGTHKRTVVITQGADPTVVAEDGKVKEFPVIPLPKEKLVDTNGAGDAFVGGFLSQLVQGKDIEECVRAGNYAANVIIQR 320 (332)
T ss_pred hccccCCEEEEEeCCCcEEEEECCeEEEeccccCCcCccccCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhc
Confidence 01235789999999999999988888888876555668999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCC
Q 019402 330 SGCTYPPKPEF 340 (341)
Q Consensus 330 ~g~~~p~~~e~ 340 (341)
.|+..|.+|.+
T Consensus 321 ~G~~~~~~~~~ 331 (332)
T PLN02548 321 SGCTYPEKPDF 331 (332)
T ss_pred cCCCCCCCccC
Confidence 99999988875
No 3
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1e-51 Score=353.06 Aligned_cols=336 Identities=63% Similarity=1.090 Sum_probs=315.0
Q ss_pred ceEEEecCceeeeEeecCHHHHHHcCCCCCceEEecCcccchHHHHhccCCceeecCchhHHHHHHHHHHhCCCCceEEE
Q 019402 5 GILLGMGNPLLDISAVVDEEFLKKYDIKLNNAILAEDKHLPMYDELASKENVEYIAGGATQNSIKVAQWMLQIPGATSYI 84 (341)
Q Consensus 5 ~~i~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~~lg~~v~li 84 (341)
...+.+|++++|+...+|.+||++|+|..|+.+++++++++..++.......+..+||++.|.+++++++++....+.++
T Consensus 7 ~il~G~gnpLLD~~a~Vd~~~L~KygL~~n~ail~d~~~~~~~~E~~~~~~~~~~AGGs~qNt~R~aq~~~~~p~~~~f~ 86 (343)
T KOG2854|consen 7 GILVGLGNPLLDISAVVDDEFLDKYGLKLNDAILADDKHLGLFDELMEGFNVKYSAGGSAQNTLRIAQWLLQQPGATVFF 86 (343)
T ss_pred ceeeccCccceeeeeccCHHHHHHcCCCCCcceecchhhHHHHHHHhhcccEEecCCchhHHHHHHHHHHccCCCceEEE
Confidence 35667899999999999999999999999999999999999999999999999999999999999999987754599999
Q ss_pred EeecCCchhHHHHHHHHhcCCceeEeecCCCCcceEEEEEeCCeeceeecccccccCCcccCCCchhHhhhhcceEEEEe
Q 019402 85 GCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVVGGERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYIA 164 (341)
Q Consensus 85 ~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~ 164 (341)
|.+|.|.+|+.+++.+++.|++..+.+.++.+|+.|.+++++.+|++..+.++...++.++++.++.|..++++.++|+.
T Consensus 87 GsvG~Dk~ge~l~~~~~~aGv~~~yq~~~d~~TGtCavli~~~nRSL~anLgAAn~f~~dhl~~~~~~~lveka~v~yv~ 166 (343)
T KOG2854|consen 87 GSVGKDKFGELLKSKARAAGVNVHYQVKEDGPTGTCAVLITGDNRSLCANLGAANCFKVDHLDKEENWALVEKAKVFYVA 166 (343)
T ss_pred eeccCchHHHHHHHHHHhcCceEEEEeccCCCCceEEEEEeCCCcchhhccchhhccCHHHhcchhhhhhhhheeEEEEE
Confidence 99999999999999999999999999889999999999998777999999999999999999888889999999999999
Q ss_pred ccccccCHHHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCCCCcEEEcCHHHHHHHHhhcCCCCCCHHHHHHHH
Q 019402 165 GFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGWETDNVEEIALKI 244 (341)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l 244 (341)
|+.+..+|+.+..+.+.+.+.+.++.++++.+.+.....+.+.+.++|+|+++.|++|++.+++..++...+..+.+...
T Consensus 167 Gffltv~p~ai~~v~qh~~e~~r~~~lnlsapfI~q~~~~~l~~v~~y~DiifgNe~EA~af~~~~~~~t~dv~eia~~~ 246 (343)
T KOG2854|consen 167 GFFLTVSPDAIRKVAQHAAENNRVFTLNLSAPFISQFFKDALDKVLPYADIIFGNEDEAAAFARAHGWETKDVKEIALKL 246 (343)
T ss_pred EEEEEeChHHHHHHHHHHHHhcchhheeccchhHHHHHHHHHHhhcCcceEEEcCHHHHHHHHHhhCCcccchHHHhhHh
Confidence 99999999999999999999999999999999998888899999999999999999999999999888888888888888
Q ss_pred hcCCCCCCCCccEEEEeeCCCCEEEEeCCeEEEEecccCCCCcccCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 019402 245 SQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAAN 324 (341)
Q Consensus 245 ~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~v~~~~~~~~~vvdttGAGDaf~a~~~~~l~~g~~~~~a~~~A~~~aa 324 (341)
....+......++++||.|.+++....+++....|..+.+..+++||+||||+|++||+++|.+|.++++|++.+..+|+
T Consensus 247 ~~~~k~~~~~~r~vvit~g~~~~i~~~~~~v~~~~v~~~~~~~ivDtnGAGDaFvgGFl~~l~qg~~l~~cir~g~~aa~ 326 (343)
T KOG2854|consen 247 SALPKVNGTRPRTVVITQGPDPVIVAEDGKVTAYPVLPLPVEEIVDTNGAGDAFVGGFLSQLVQGKSLEECIRAGSYAAS 326 (343)
T ss_pred hccccccccccceEEEccCCCceEEecCCceEEeccccccceeeeeCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHhh
Confidence 77776455678899999999999999888888877777777799999999999999999999999999999999999999
Q ss_pred hhhhhccccCCCCCCC
Q 019402 325 VVIQRSGCTYPPKPEF 340 (341)
Q Consensus 325 ~~v~~~g~~~p~~~e~ 340 (341)
.+++..|+.+|..++|
T Consensus 327 ~vi~~~G~~~p~~~~~ 342 (343)
T KOG2854|consen 327 HVIRRVGCTVPEKPDF 342 (343)
T ss_pred heeeccCCCCCCCCCC
Confidence 9999999999999886
No 4
>PLN02813 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=2.5e-48 Score=361.81 Aligned_cols=312 Identities=20% Similarity=0.280 Sum_probs=264.2
Q ss_pred cceEEEecCceeeeEeecCHHHHHHcCCCCCceEEecCcccchHHHHhccCCceeecCchhHHHHHHHHHHhCCC-----
Q 019402 4 EGILLGMGNPLLDISAVVDEEFLKKYDIKLNNAILAEDKHLPMYDELASKENVEYIAGGATQNSIKVAQWMLQIP----- 78 (341)
Q Consensus 4 ~~~i~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~~lg----- 78 (341)
+.+|+++|++++|++..++.+|+++++++++...+.+.+..-...+.....+....+||++.|+|+++++ ||
T Consensus 69 ~~~vl~iG~~~vDi~~~v~~~fl~~~~lp~~~~~~i~~~~~~~l~e~~~~~~~~~~~GG~~~N~Avalar---LG~~~~~ 145 (426)
T PLN02813 69 RWDVLGLGQAMVDFSGMVDDEFLERLGLEKGTRKVINHEERGKVLRALDGCSYKASAGGSLSNTLVALAR---LGSQSAA 145 (426)
T ss_pred cceEEEeCCceeEEEEecCHHHHHHcCCCcCcccccCHHHHHHHHHHhhccCceEecCcHHHHHHHHHHH---hcccccc
Confidence 5689999999999999999999999999999988887766666667777888899999999999999998 45
Q ss_pred ---CceEEEEeecCCchhHHHHHHHHhcCCceeEeecCCCCcceEEEEEe-CCeeceeecccccccCCcccCCCchhHhh
Q 019402 79 ---GATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVV-GGERSLVANLSAANCYKSEHLKRPEIWSI 154 (341)
Q Consensus 79 ---~~v~li~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (341)
.+|.++|.||+|.+|+++++.|++.||++.++...+.+|+.++++++ +|+|+++.+.+++..++++++. .+.
T Consensus 146 ~~~~~v~~ig~VG~D~~G~~i~~~L~~~GVd~~~~~~~~~~Tg~~~ilv~~~gertii~~~Ga~~~l~~~~~~----~~~ 221 (426)
T PLN02813 146 GPALNVAMAGSVGSDPLGDFYRTKLRRANVHFLSQPVKDGTTGTVIVLTTPDAQRTMLSYQGTSSTVNYDSCL----ASA 221 (426)
T ss_pred CCCCcEEEEEEeCCChHHHHHHHHHHHcCCcccceecCCCCceEEEEEEcCCCCceeeeccCchhhCCccccC----HHH
Confidence 69999999999999999999999999999988766678999988887 7999998888877777665543 366
Q ss_pred hhcceEEEEeccccccC--HHHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhH-HHHhhCCCCcEEEcCHHHHHHHHhhcC
Q 019402 155 VEKAKYYYIAGFFLTVS--PESIQMVAEHAAAKNKVFMMNLSAPFICEFFRE-PQEKALPYMDYVFGNETEARTFAKVHG 231 (341)
Q Consensus 155 ~~~~~~v~i~~~~~~~~--~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~-~~~~~l~~~dil~~n~~E~~~l~~~~~ 231 (341)
+++++++|++++.+..+ .+.+..+++.+++.|+++++|+++......+++ ....+++++|++++|++|+..+++..
T Consensus 222 i~~adiv~l~g~~~~~~~~~~~~~~~~~~ak~~g~~v~~d~s~~~~~~~~~~~l~~~ll~~vDil~~Ne~Ea~~l~g~~- 300 (426)
T PLN02813 222 ISKSRVLVVEGYLWELPQTIEAIAQACEEAHRAGALVAVTASDVSCIERHRDDFWDVMGNYADILFANSDEARALCGLG- 300 (426)
T ss_pred HhcCCEEEEEeeecCCCchHHHHHHHHHHHHHcCCEEEEECCCcchhhhhHHHHHHHHHhcCCEEEeCHHHHHHHhCCC-
Confidence 89999999998764433 377889999999999999999876432222222 23445689999999999999998642
Q ss_pred CCCCCHHHHHHHHhcCCCCCCCCccEEEEeeCCCCEEEEeCCeEEEEecccCCCCcccCCCCcchhhHHHHHHHHhcCC-
Q 019402 232 WETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEK- 310 (341)
Q Consensus 232 ~~~~~~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~v~~~~~~~~~vvdttGAGDaf~a~~~~~l~~g~- 310 (341)
+.++.+++++.+ . .+++.||||+|++|++++++++.+++|++++ ++||||||||+|+|||+|++++|+
T Consensus 301 -~~~~~~~a~~~L------~-~~~~~VVVT~G~~Ga~~~~~~~~~~~pa~~v---~vVDTtGAGDAF~Agfl~~l~~G~~ 369 (426)
T PLN02813 301 -SEESPESATRYL------S-HFCPLVSVTDGARGSYIGVKGEAVYIPPSPC---VPVDTCGAGDAYAAGILYGLLRGVS 369 (426)
T ss_pred -CCCCHHHHHHHH------H-cCCCEEEEEeCCCCeEEEECCEEEEeCCCCC---CcccCCChHHHHHHHHHHHHHcCCC
Confidence 124567777776 2 3578999999999999999998888887755 899999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhhhhhccccC
Q 019402 311 PVEDCVRTGCYAANVVIQRSGCTY 334 (341)
Q Consensus 311 ~~~~a~~~A~~~aa~~v~~~g~~~ 334 (341)
++++|+++|+++|+.+|++.|++.
T Consensus 370 ~l~~al~~A~a~Aa~~v~~~Ga~~ 393 (426)
T PLN02813 370 DLRGMGELAARVAATVVGQQGTRL 393 (426)
T ss_pred CHHHHHHHHHHHHHHHHcccCCCc
Confidence 999999999999999999999953
No 5
>PRK15074 inosine/guanosine kinase; Provisional
Probab=100.00 E-value=5.4e-48 Score=357.09 Aligned_cols=315 Identities=19% Similarity=0.303 Sum_probs=257.6
Q ss_pred CcceEEEecCceeeeEeecCHHHHHHcCCCCCceEEecCc-ccchHHHHhccCC-ceeecCchhHHHHHHHHHHhCCCCc
Q 019402 3 YEGILLGMGNPLLDISAVVDEEFLKKYDIKLNNAILAEDK-HLPMYDELASKEN-VEYIAGGATQNSIKVAQWMLQIPGA 80 (341)
Q Consensus 3 ~~~~i~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~-~~~~~GG~~~n~a~~l~~l~~lg~~ 80 (341)
...+|+++|++.+|+...++++||++|++.+|.+.+.+.+ +.+...+...... ....+||++.|+|+++++ |+ |.+
T Consensus 32 ~~~~v~g~GNaLvDi~~~v~d~fL~~~~l~kg~m~li~~e~~~~l~~~l~~~~~~~~~~~GGsaaNtA~~lAr-LG-G~~ 109 (434)
T PRK15074 32 SRTYIVGIDQTLVDIEAKVDDEFLERYGLSKGHSLVIEDDVAEALYQELKQNNLITHEFAGGTIGNTLHNYSV-LA-DDR 109 (434)
T ss_pred CCCcEEEeCCceeeEEEeeCHHHHHHcCCCCCceEecCHHHHHHHHHHHhhccccccccCCCHHHHHHHHHHH-cC-CCC
Confidence 3568999999999999999999999999999999999885 4444444433222 466799999999999998 32 489
Q ss_pred eEEEEeecCC-chhHHHHHHHH--hcCCceeEeecCCCCcceEEEEEe-CCeeceeecccccccCCcccCCCchhHhhhh
Q 019402 81 TSYIGCIGKD-KFGEEMKKNST--AAGVNVKYYEDESAPTGTCAVCVV-GGERSLVANLSAANCYKSEHLKRPEIWSIVE 156 (341)
Q Consensus 81 v~li~~vG~D-~~g~~i~~~l~--~~gi~~~~~~~~~~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (341)
+.++|.||+| .+|+++++.|+ +.||+++++...+.+|+.++++++ +|+|+++.+.+++..+++++++. ..++
T Consensus 110 ~~fig~VGdDd~~G~~~~~~L~~~~~GVdt~~v~~~~~~TG~~~VlV~~dGeRt~~t~~GA~~~Lt~edld~----~~i~ 185 (434)
T PRK15074 110 SVLLGVMSSNIEIGSYAYRYLCNTSSRTDLNYLQGVDGPIGRCFTLISEDGERTFAISPGHMNQLRPESIPE----DVIA 185 (434)
T ss_pred eEEEEEeCCCHHHHHHHHHHhhhhhCCccCcceEEcCCCCEEEEEEECCCCCEEEEEecChhhcCChhHCCH----hHhc
Confidence 9999999999 79999999997 689999998644567999999997 89999999999888999988874 5789
Q ss_pred cceEEEEeccccc-----cCHHHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHH-HHhhCCCCcEEEcCHHHHHHHHhhc
Q 019402 157 KAKYYYIAGFFLT-----VSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREP-QEKALPYMDYVFGNETEARTFAKVH 230 (341)
Q Consensus 157 ~~~~v~i~~~~~~-----~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~-~~~~l~~~dil~~n~~E~~~l~~~~ 230 (341)
+++++|++++.+. ..++.+..+++.+++.|+++++|++........++. ...+++++|++++|++|+..|++
T Consensus 186 ~a~ilyl~Gy~l~~~~~~~~~~a~~~al~~Ake~G~~VslD~s~~~~v~~~~~~~~e~l~~~vDILf~NeeEa~~LtG-- 263 (434)
T PRK15074 186 GASALVLTAYLVRCKPGEPMPEATMKAIEYAKKHNVPVVLTLGTKFVIEDNPQWWQEFLKEHVSILAMNEDEAEALTG-- 263 (434)
T ss_pred cCCEEEEeeeehhcccCCCcHHHHHHHHHHHHHcCCEEEEECcchhhccccHHHHHHHHHhcCCEEEcCHHHHHHHhC--
Confidence 9999999998753 236788999999999999999999875432222222 23456799999999999999986
Q ss_pred CCCCCCHHHHHHHHhcCCCCCCCCccEEEEeeCCCCEEEEeCC-------eEE---------------------------
Q 019402 231 GWETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDG-------KVK--------------------------- 276 (341)
Q Consensus 231 ~~~~~~~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~-------~~~--------------------------- 276 (341)
.++++++++.+ .. +++.||||+|++|++++..+ ..+
T Consensus 264 ---~~d~eea~~~L------~~-~~~~VVVTlG~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (434)
T PRK15074 264 ---ESDPLLASDKA------LD-WVDLVLCTAGPIGLYMAGYTEDEAKRETQHPLLPGAIAEFNRYEFSRAMRKKDCQNP 333 (434)
T ss_pred ---CCCHHHHHHHH------Hc-CCCEEEEEECCCCEEEEecccccccCceeeeccccccccccchhcccchhccccccc
Confidence 34677888887 32 36899999999999997522 222
Q ss_pred -----EEecccCCCCcccCCCCcchhhHHHHHHHHhcCC--------------------CHHHHHHHHHHHHhhhhhhcc
Q 019402 277 -----LFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEK--------------------PVEDCVRTGCYAANVVIQRSG 331 (341)
Q Consensus 277 -----~v~~~~~~~~~vvdttGAGDaf~a~~~~~l~~g~--------------------~~~~a~~~A~~~aa~~v~~~g 331 (341)
++|++...++++||||||||+|+|||+|+|++|+ ++++|+++|+++|+.+|++.|
T Consensus 334 ~~~~~~~~~~~~~~~~~vDttGAGD~f~~gfl~~l~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~vi~~~G 413 (434)
T PRK15074 334 LRVYSHIAPYMGGPEKIMNTNGAGDGALSALLHDITANSYHRSNVPNSSKHKRTYLTYSSLAQVCKYANRVSYEVLNQHS 413 (434)
T ss_pred cccccccCcccCCCCcceeCCCcHHHHHHHHHHHHHCCCcccccccccccccccccccCCHHHHHHHHHHHHHHHHhhcC
Confidence 6666522245899999999999999999999998 899999999999999999999
Q ss_pred ccCC
Q 019402 332 CTYP 335 (341)
Q Consensus 332 ~~~p 335 (341)
++++
T Consensus 414 ~~~~ 417 (434)
T PRK15074 414 PRLS 417 (434)
T ss_pred CCCC
Confidence 9644
No 6
>PLN02379 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=1.3e-47 Score=351.67 Aligned_cols=313 Identities=23% Similarity=0.322 Sum_probs=261.2
Q ss_pred cceEEEec-CceeeeEeecCHHHHHHcCCCCCceEEecCcccchHHHHhc---------cCCceeecCchhHHHHHHHHH
Q 019402 4 EGILLGMG-NPLLDISAVVDEEFLKKYDIKLNNAILAEDKHLPMYDELAS---------KENVEYIAGGATQNSIKVAQW 73 (341)
Q Consensus 4 ~~~i~~iG-~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~---------~~~~~~~~GG~~~n~a~~l~~ 73 (341)
+++|+.|| ++.+|+...++++||+++++.+|.+.+.+.++.-....... ....+.++||++.|++.++++
T Consensus 19 ~~~v~g~g~nalvD~~~~v~~~~l~~~~~~kg~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~GGsa~N~a~~la~ 98 (367)
T PLN02379 19 PPLVLGLQPVALVDHVARVDWSLLDQIPGDRGGSIRVTIEELEHILREVNAHILPSPDDLSPIKTMAGGSVANTIRGLSA 98 (367)
T ss_pred CCcEEEEccccEEEEEEecCHHHHHHcCCCCcceeecCHHHHHHHHHHhhhcccccccccccceecCCCHHHHHHHHHHH
Confidence 56899999 99999999999999999999999988888766544443332 224778899999999999985
Q ss_pred HhCCCCceEEEEeecCCchhHHHHHHHHhcCCceeEeecCCCCcceEEEEEe-CCeeceeecccccccCCcccCCCchhH
Q 019402 74 MLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVV-GGERSLVANLSAANCYKSEHLKRPEIW 152 (341)
Q Consensus 74 l~~lg~~v~li~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (341)
.+ |.++.++|.||+|.+|+++++.|++.||++.+++..+.+|+.++++++ +|+|++..+.++...++++++..
T Consensus 99 ~L--G~~~~~ig~VG~D~~G~~~~~~L~~~GI~~~~~~~~~~~Tg~~~v~v~~dgert~~~~lg~~~~l~~~~~~~---- 172 (367)
T PLN02379 99 GF--GVSTGIIGACGDDEQGKLFVSNMGFSGVDLSRLRAKKGPTAQCVCLVDALGNRTMRPCLSSAVKLQADELTK---- 172 (367)
T ss_pred hc--CCCEEEEEEeCCChhHHHHHHHHHHcCCCccCcccCCCCCceEEEEECCCCCccccCCccccccCChhHCCH----
Confidence 34 599999999999999999999999999999887655668999998887 79998876667666777766653
Q ss_pred hhhhcceEEEEeccccccCHHHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCC--CCcEEEcCHHHHHHHHhhc
Q 019402 153 SIVEKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALP--YMDYVFGNETEARTFAKVH 230 (341)
Q Consensus 153 ~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~--~~dil~~n~~E~~~l~~~~ 230 (341)
+.+++++++|++ +.. .+++.+.++++.++++|+++++|++.+.....+++.+.++++ ++|++++|++|+..+++..
T Consensus 173 ~~~~~~~~v~v~-~~~-~~~~~~~~~~~~A~~~g~~v~lD~s~~~~v~~~r~~l~~ll~~~~vDilf~Ne~Ea~~l~~~~ 250 (367)
T PLN02379 173 EDFKGSKWLVLR-YGF-YNLEVIEAAIRLAKQEGLSVSLDLASFEMVRNFRSPLLQLLESGKIDLCFANEDEARELLRGE 250 (367)
T ss_pred HHHhcCCEEEEE-ccc-CCHHHHHHHHHHHHHcCCEEEEeccchhhhhhhhHHHHHHhhcCCccEEEcCHHHHHHHhcCC
Confidence 568899999999 432 567899999999999999999999876544445566777774 8999999999999998632
Q ss_pred CCCCCCHHHHHHHHhcCCCCCCCCccEEEEeeCCCCEEEEeCCeEEEEecccCCCCcccCCCCcchhhHHHHHHHHhcCC
Q 019402 231 GWETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEK 310 (341)
Q Consensus 231 ~~~~~~~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~v~~~~~~~~~vvdttGAGDaf~a~~~~~l~~g~ 310 (341)
. .++.+++.+.+ ..+++.++||+|++|++++.+++.++++++++ +++||||||||+|+|||+|++++|+
T Consensus 251 ~--~~~~~~~~~~l-------~~~~~~vvvT~G~~Ga~~~~~~~~~~v~a~~~--~~vVDTtGAGDaFaagfl~gl~~G~ 319 (367)
T PLN02379 251 Q--ESDPEAALEFL-------AKYCNWAVVTLGSKGCIARHGKEVVRVPAIGE--TNAVDATGAGDLFASGFLYGLIKGL 319 (367)
T ss_pred C--CCCHHHHHHHH-------HhcCCEEEEEECCCCeEEEECCEEEEecCCCC--CCcccCCChhHHHHHHHHHHHHCCC
Confidence 2 23456666555 33578999999999999999888888887643 3789999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhhhhhccccCC
Q 019402 311 PVEDCVRTGCYAANVVIQRSGCTYP 335 (341)
Q Consensus 311 ~~~~a~~~A~~~aa~~v~~~g~~~p 335 (341)
++++|+++|+++|+.+|++.|++.+
T Consensus 320 ~l~~a~~~g~~aAa~vi~~~G~~~~ 344 (367)
T PLN02379 320 SLEECCKVGACSGGSVVRALGGEVT 344 (367)
T ss_pred CHHHHHHHHHHHHHHHHhccCCCCC
Confidence 9999999999999999999999754
No 7
>cd01168 adenosine_kinase Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor.The physiological function of AK is associated with the regulation of extracellular adenosine levels and the preservation of intracellular adenylate pools. Adenosine kinase is involved in the purine salvage pathway.
Probab=100.00 E-value=9.2e-47 Score=341.43 Aligned_cols=310 Identities=48% Similarity=0.737 Sum_probs=255.9
Q ss_pred ceEEEecCceeeeEeecCHHHHHHcCCCCCceEEecCcccchHHHHhccCCceeecCchhHHHHHHHHHHhCCCCceEEE
Q 019402 5 GILLGMGNPLLDISAVVDEEFLKKYDIKLNNAILAEDKHLPMYDELASKENVEYIAGGATQNSIKVAQWMLQIPGATSYI 84 (341)
Q Consensus 5 ~~i~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~~lg~~v~li 84 (341)
.+|+++|++++|++..+++..+..+++.+|+.++......- ......+....+||++.|+|.+|++ + |.++.++
T Consensus 2 ~~v~~vG~~~~D~~~~v~~~p~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~GG~~~N~A~~la~-L--G~~~~~i 75 (312)
T cd01168 2 YDVLGLGNALVDILAQVDDAFLEKLGLKKGDMILADMEEQE---ELLAKLPVKYIAGGSAANTIRGAAA-L--GGSAAFI 75 (312)
T ss_pred ceEEEECCCeEEEEEecCHHHHHHcCCCCCceeecCHHHHH---HHHHhcCccccCCCHHHHHHHHHHH-h--cCCeEEE
Confidence 47999999999999999865555555555554444211110 0111125678999999999999998 4 4999999
Q ss_pred EeecCCchhHHHHHHHHhcCCceeEeecCCCCcceEEEEEe-CCeeceeecccccccCCcccCCCchhHhhhhcceEEEE
Q 019402 85 GCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVV-GGERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYI 163 (341)
Q Consensus 85 ~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i 163 (341)
|.+|+|.+|+.+++.|+++||++++++..+.+|+.++++++ +|+|+++.+++++..++++++.. +.++++|++|+
T Consensus 76 ~~vG~D~~g~~i~~~l~~~GV~~~~~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~----~~l~~~~~v~~ 151 (312)
T cd01168 76 GRVGDDKLGDFLLKDLRAAGVDTRYQVQPDGPTGTCAVLVTPDAERTMCTYLGAANELSPDDLDW----SLLAKAKYLYL 151 (312)
T ss_pred EEeccChhHHHHHHHHHHCCCccccccCCCCCceEEEEEEcCCCceeeecccchhhcCChhHCCH----HHHccCCEEEE
Confidence 99999999999999999999999988655678999999887 68999888888878888877753 56889999999
Q ss_pred eccccccCHHHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCCCCcEEEcCHHHHHHHHhhcCCCCCCHHHHHHH
Q 019402 164 AGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGWETDNVEEIALK 243 (341)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~ 243 (341)
+++.+..+++.+..+++.+++.|.++++|+..+.+....++.+.++++++|++++|++|++.+++. +.++..++++.
T Consensus 152 ~~~~~~~~~~~~~~~~~~a~~~g~~v~~d~~~~~~~~~~~~~~~~~l~~~d~l~~n~~E~~~l~~~---~~~~~~~~a~~ 228 (312)
T cd01168 152 EGYLLTVPPEAILLAAEHAKENGVKIALNLSAPFIVQRFKEALLELLPYVDILFGNEEEAEALAEA---ETTDDLEAALK 228 (312)
T ss_pred EEEecCCCHHHHHHHHHHHHHcCCEEEEeCCcHHHHHHHHHHHHHHHhhCCEEEeCHHHHHHHhCC---CCCChHHHHHH
Confidence 997665666899999999999999999999765443344455788999999999999999999863 12456778888
Q ss_pred HhcCCCCCCCCccEEEEeeCCCCEEEEeCCeEEEEecccCCCCcccCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 019402 244 ISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAA 323 (341)
Q Consensus 244 l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~v~~~~~~~~~vvdttGAGDaf~a~~~~~l~~g~~~~~a~~~A~~~a 323 (341)
+ ...+++.+|||+|++|++++++++.+++|++++ ++++|||||||+|+|||++++++|+++++|+++|+++|
T Consensus 229 l------~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~--~~vvDttGAGDaf~ag~l~~l~~g~~~~~a~~~a~~~A 300 (312)
T cd01168 229 L------LALRCRIVVITQGAKGAVVVEGGEVYPVPAIPV--EKIVDTNGAGDAFAGGFLYGLVQGEPLEECIRLGSYAA 300 (312)
T ss_pred H------HhcCCCEEEEecCCCCeEEEECCEEEeCCCCCC--CCcccCCchHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 8 566889999999999999998888888887651 38999999999999999999999999999999999999
Q ss_pred hhhhhhccccCC
Q 019402 324 NVVIQRSGCTYP 335 (341)
Q Consensus 324 a~~v~~~g~~~p 335 (341)
+++|++.|+..|
T Consensus 301 a~~v~~~G~~~~ 312 (312)
T cd01168 301 AEVIQQLGPRLP 312 (312)
T ss_pred HHHHhccCCCCC
Confidence 999999998653
No 8
>PRK11142 ribokinase; Provisional
Probab=100.00 E-value=3.1e-47 Score=343.78 Aligned_cols=293 Identities=23% Similarity=0.337 Sum_probs=246.8
Q ss_pred ceEEEecCceeeeEeecCHHHHHHcCCCCCceEEecCcccchHHHHhccCCceeecCchhHHHHHHHHHHhCCCCceEEE
Q 019402 5 GILLGMGNPLLDISAVVDEEFLKKYDIKLNNAILAEDKHLPMYDELASKENVEYIAGGATQNSIKVAQWMLQIPGATSYI 84 (341)
Q Consensus 5 ~~i~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~~lg~~v~li 84 (341)
++|+++|++++|++..++ ++|.++..+...+....+||.+.|+|.+|++ + |.++.++
T Consensus 3 ~~i~~iG~~~~D~~~~~~--------------------~~p~~~~~~~~~~~~~~~GG~~~Nva~~la~-l--G~~~~~~ 59 (306)
T PRK11142 3 GKLVVLGSINADHVLNLE--------------------SFPRPGETLTGRHYQVAFGGKGANQAVAAAR-L--GADIAFI 59 (306)
T ss_pred CcEEEECCceeeEEEEeC--------------------CCCCCCCeeEeccceecCCCcHHHHHHHHHh-c--CCcEEEE
Confidence 479999999999999987 5778888888888899999999999999998 4 5999999
Q ss_pred EeecCCchhHHHHHHHHhcCCceeEee-cCCCCcceEEEEEe-CCeeceeecccccccCCcccCCCchhHhhhhcceEEE
Q 019402 85 GCIGKDKFGEEMKKNSTAAGVNVKYYE-DESAPTGTCAVCVV-GGERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYY 162 (341)
Q Consensus 85 ~~vG~D~~g~~i~~~l~~~gi~~~~~~-~~~~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 162 (341)
|.+|+|.+|+.+++.|++.||+++++. ..+.+|+.+++..+ +|+|+++.+.++...++++.++. ..+.+.+++++|
T Consensus 60 ~~vG~D~~g~~i~~~L~~~gV~~~~i~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~v~ 137 (306)
T PRK11142 60 ACVGDDSIGESMRQQLAKDGIDTAPVSVIKGESTGVALIFVNDEGENSIGIHAGANAALTPALVEA--HRELIANADALL 137 (306)
T ss_pred EEECCChhHHHHHHHHHHcCCChhhEEEcCCCCCCEEEEEECCCCCEEEEEeCCccccCCHHHHHH--HHhhhccCCEEE
Confidence 999999999999999999999999985 56677999988887 68888877777666777665542 235678999999
Q ss_pred EeccccccCHHHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCCCCcEEEcCHHHHHHHHhhcCCCCCCHHHHHH
Q 019402 163 IAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGWETDNVEEIAL 242 (341)
Q Consensus 163 i~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~ 242 (341)
+++ ..+.+.+..+++.+++.|.++++|+.... .....+++++|++++|++|++.+++....+.++..++++
T Consensus 138 ~~~---~~~~~~~~~~~~~a~~~g~~v~~d~~~~~------~~~~~~~~~~dil~~n~~Ea~~l~g~~~~~~~~~~~~~~ 208 (306)
T PRK11142 138 MQL---ETPLETVLAAAKIAKQHGTKVILNPAPAR------ELPDELLALVDIITPNETEAEKLTGIRVEDDDDAAKAAQ 208 (306)
T ss_pred EeC---CCCHHHHHHHHHHHHHcCCEEEEECCCCc------ccCHHHHhhCCEEcCCHHHHHHHhCCCCCChHHHHHHHH
Confidence 975 34567888999999999999999986421 123467889999999999999998754433445566777
Q ss_pred HHhcCCCCCCCCccEEEEeeCCCCEEEEeCCeEEEEecccCCCCcccCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 019402 243 KISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYA 322 (341)
Q Consensus 243 ~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~v~~~~~~~~~vvdttGAGDaf~a~~~~~l~~g~~~~~a~~~A~~~ 322 (341)
.+ ...+++.+|||+|++|++++++++.+++|++++ +++|||||||+|+|||++++++|+++++|+++|+++
T Consensus 209 ~l------~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~v---~vvDt~GAGDaF~Agfi~~l~~g~~~~~al~~a~~~ 279 (306)
T PRK11142 209 VL------HQKGIETVLITLGSRGVWLSENGEGQRVPGFRV---QAVDTIAAGDTFNGALVTALLEGKPLPEAIRFAHAA 279 (306)
T ss_pred HH------HHhCCCeEEEEECCCcEEEEeCCcceeccCCCc---ccccCCCchhHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 77 456789999999999999998888888887655 899999999999999999999999999999999999
Q ss_pred Hhhhhhhcccc--CCCCCCC
Q 019402 323 ANVVIQRSGCT--YPPKPEF 340 (341)
Q Consensus 323 aa~~v~~~g~~--~p~~~e~ 340 (341)
|+.+|++.|+. +|+.+++
T Consensus 280 Aa~~~~~~G~~~~~~~~~~~ 299 (306)
T PRK11142 280 AAIAVTRKGAQPSIPWREEI 299 (306)
T ss_pred HHHHcCCCcccccCCCHHHH
Confidence 99999999995 5766553
No 9
>PTZ00292 ribokinase; Provisional
Probab=100.00 E-value=3.3e-46 Score=339.73 Aligned_cols=299 Identities=22% Similarity=0.286 Sum_probs=247.9
Q ss_pred cceEEEecCceeeeEeecCHHHHHHcCCCCCceEEecCcccchHHHHhccCCceeecCchhHHHHHHHHHHhCCCCceEE
Q 019402 4 EGILLGMGNPLLDISAVVDEEFLKKYDIKLNNAILAEDKHLPMYDELASKENVEYIAGGATQNSIKVAQWMLQIPGATSY 83 (341)
Q Consensus 4 ~~~i~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~~lg~~v~l 83 (341)
+++|+|+|.+++|++..++ ++|.+++..........+||.++|+|.+|++ + |.++.+
T Consensus 15 ~~~vlviG~~~vD~~~~~~--------------------~~~~~~~~~~~~~~~~~~GG~~~NvA~~la~-l--G~~~~~ 71 (326)
T PTZ00292 15 EPDVVVVGSSNTDLIGYVD--------------------RMPQVGETLHGTSFHKGFGGKGANQAVMASK-L--GAKVAM 71 (326)
T ss_pred CCCEEEEccceeeEEEecC--------------------CCCCCCCceeecCceeCCCCcHHHHHHHHHH-c--CCCeEE
Confidence 5689999999999999988 5777777778888899999999999999998 4 599999
Q ss_pred EEeecCCchhHHHHHHHHhcCCceeEe-ecCCCCcceEEEEEe--CCeeceeecccccccCCcccCCCchhHhhhhc-ce
Q 019402 84 IGCIGKDKFGEEMKKNSTAAGVNVKYY-EDESAPTGTCAVCVV--GGERSLVANLSAANCYKSEHLKRPEIWSIVEK-AK 159 (341)
Q Consensus 84 i~~vG~D~~g~~i~~~l~~~gi~~~~~-~~~~~~t~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 159 (341)
+|.+|+|.+|+.+++.|++.||+++++ +..+.+|+.+++.++ +|+|+++.+++++..++++.+.. .+..+.. ++
T Consensus 72 is~vG~D~~g~~i~~~l~~~GI~~~~~~~~~~~~t~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~--~~~~i~~~~~ 149 (326)
T PTZ00292 72 VGMVGTDGFGSDTIKNFKRNGVNTSFVSRTENSSTGLAMIFVDTKTGNNEIVIIPGANNALTPQMVDA--QTDNIQNICK 149 (326)
T ss_pred EEEECCChhHHHHHHHHHHcCCChhhEEEcCCCCCcEEEEEEeCCCCceEEEEeCCccccCCHHHHHH--HHHHhhhhCC
Confidence 999999999999999999999999998 566778999998886 47888877777766777665542 2344667 89
Q ss_pred EEEEeccccccCHHHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCCCCcEEEcCHHHHHHHHhhcCCCCCCHHH
Q 019402 160 YYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGWETDNVEE 239 (341)
Q Consensus 160 ~v~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~ 239 (341)
++++++ ..+.+...++++.+++.|+++++|++... .....+.+.++++++|++++|++|++.+++....+.++..+
T Consensus 150 ~~~~~~---~~~~~~~~~~~~~a~~~g~~v~~D~~~~~-~~~~~~~~~~~l~~~dii~~n~~E~~~l~g~~~~~~~~~~~ 225 (326)
T PTZ00292 150 YLICQN---EIPLETTLDALKEAKERGCYTVFNPAPAP-KLAEVEIIKPFLKYVSLFCVNEVEAALITGMEVTDTESAFK 225 (326)
T ss_pred EEEECC---CCCHHHHHHHHHHHHHcCCEEEEECCCCc-cccccccHHHHHhcCCEEcCCHHHHHHHhCCCCCChhHHHH
Confidence 999875 45667888899999999999999996432 11122457788999999999999999998754333344556
Q ss_pred HHHHHhcCCCCCCCCccEEEEeeCCCCEEEEeCCe-EEEEecccCCCCcccCCCCcchhhHHHHHHHHhcCCCHHHHHHH
Q 019402 240 IALKISQWPKASGTHKRITVITQGADPVVVAEDGK-VKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRT 318 (341)
Q Consensus 240 ~~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~-~~~v~~~~~~~~~vvdttGAGDaf~a~~~~~l~~g~~~~~a~~~ 318 (341)
+++.+ ...+++.||+|+|++|+++++++. .+++|++++ +++|||||||+|+|||++++++|+++++|+++
T Consensus 226 ~~~~l------~~~g~~~vvvT~G~~Ga~~~~~~~~~~~~~~~~~---~vvDttGAGDaF~ag~l~~l~~g~~~~~al~~ 296 (326)
T PTZ00292 226 ASKEL------QQLGVENVIITLGANGCLIVEKENEPVHVPGKRV---KAVDTTGAGDCFVGSMAYFMSRGKDLKESCKR 296 (326)
T ss_pred HHHHH------HHcCCCeEEEEeCCCcEEEEeCCCceEEccCCcc---ccCCCcchHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 67777 456788999999999999987664 477887654 89999999999999999999999999999999
Q ss_pred HHHHHhhhhhhcccc--CCCCCCC
Q 019402 319 GCYAANVVIQRSGCT--YPPKPEF 340 (341)
Q Consensus 319 A~~~aa~~v~~~g~~--~p~~~e~ 340 (341)
|+++|++++++.|+. +|+.+|+
T Consensus 297 a~a~Aa~~v~~~G~~~~~~~~~~~ 320 (326)
T PTZ00292 297 ANRIAAISVTRHGTQSSYPHPSEL 320 (326)
T ss_pred HHHHHHHHcCCCCccccCCCHHHH
Confidence 999999999999995 5766554
No 10
>cd01174 ribokinase Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.
Probab=100.00 E-value=8.9e-46 Score=332.08 Aligned_cols=285 Identities=25% Similarity=0.368 Sum_probs=243.2
Q ss_pred eEEEecCceeeeEeecCHHHHHHcCCCCCceEEecCcccchHHHHhccCCceeecCchhHHHHHHHHHHhCCCCceEEEE
Q 019402 6 ILLGMGNPLLDISAVVDEEFLKKYDIKLNNAILAEDKHLPMYDELASKENVEYIAGGATQNSIKVAQWMLQIPGATSYIG 85 (341)
Q Consensus 6 ~i~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~~lg~~v~li~ 85 (341)
+|+++|.+++|++..++ ++|.+++.....+...++||.+.|+|.+|++ + |.++.++|
T Consensus 1 ~il~iG~~~~D~~~~~~--------------------~~~~~~~~~~~~~~~~~~GG~~~NvA~~l~~-l--G~~~~~~~ 57 (292)
T cd01174 1 KVVVVGSINVDLVTRVD--------------------RLPKPGETVLGSSFETGPGGKGANQAVAAAR-L--GARVAMIG 57 (292)
T ss_pred CEEEEeeceeEEEEEec--------------------CCCCCCCcEEeccceecCCCcHHHHHHHHHH-c--CCceEEEE
Confidence 58999999999999887 5677777777888899999999999999998 4 59999999
Q ss_pred eecCCchhHHHHHHHHhcCCceeEe-ecCCCCcceEEEEEe-CCeeceeecccccccCCcccCCCchhHhhhhcceEEEE
Q 019402 86 CIGKDKFGEEMKKNSTAAGVNVKYY-EDESAPTGTCAVCVV-GGERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYI 163 (341)
Q Consensus 86 ~vG~D~~g~~i~~~l~~~gi~~~~~-~~~~~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i 163 (341)
.+|+|.+|+.+++.|+++||+++++ +..+.+|+.+++.++ +|+|+++.+.++...++++.++. ..+.++.++++++
T Consensus 58 ~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~ 135 (292)
T cd01174 58 AVGDDAFGDELLENLREEGIDVSYVEVVVGAPTGTAVITVDESGENRIVVVPGANGELTPADVDA--ALELIAAADVLLL 135 (292)
T ss_pred EEcCCccHHHHHHHHHHcCCCceEEEEcCCCCceeEEEEEcCCCceEEEEeCCCCCCCCHHHHHH--HHHhcccCCEEEE
Confidence 9999999999999999999999998 566778999988887 58888877766665666554442 3456889999999
Q ss_pred eccccccCHHHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCCCCcEEEcCHHHHHHHHhhcCCCCCCHHHHHHH
Q 019402 164 AGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGWETDNVEEIALK 243 (341)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~ 243 (341)
++ ..+.+.+..+++.+++++.++++|+.... .....+++++|++++|++|++.+++....+.++.+++++.
T Consensus 136 ~~---~~~~~~~~~~~~~a~~~g~~v~~D~~~~~------~~~~~~~~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~ 206 (292)
T cd01174 136 QL---EIPLETVLAALRAARRAGVTVILNPAPAR------PLPAELLALVDILVPNETEAALLTGIEVTDEEDAEKAARL 206 (292)
T ss_pred eC---CCCHHHHHHHHHHHHhcCCEEEEeCCCcC------cCcHHHHhhCCEEeeCHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 86 45677889999999999999999997432 1235788899999999999999987654444456677788
Q ss_pred HhcCCCCCCCCccEEEEeeCCCCEEEEeCCeEEEEecccCCCCcccCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 019402 244 ISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAA 323 (341)
Q Consensus 244 l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~v~~~~~~~~~vvdttGAGDaf~a~~~~~l~~g~~~~~a~~~A~~~a 323 (341)
+ ...+++.+|+|+|++|+++++++..+++|++++ +++||+||||+|+|||++++++|+++++|+++|+++|
T Consensus 207 l------~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~---~~vdt~GaGD~F~ag~l~~l~~g~~~~~al~~a~~~A 277 (292)
T cd01174 207 L------LAKGVKNVIVTLGAKGALLASGGEVEHVPAFKV---KAVDTTGAGDTFIGALAAALARGLSLEEAIRFANAAA 277 (292)
T ss_pred H------HHcCCCEEEEEeCCCceEEEeCCceEEecCCCc---ccCCCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 7 566889999999999999998888888887654 8899999999999999999999999999999999999
Q ss_pred hhhhhhcccc
Q 019402 324 NVVIQRSGCT 333 (341)
Q Consensus 324 a~~v~~~g~~ 333 (341)
+.++++.|+.
T Consensus 278 a~~~~~~G~~ 287 (292)
T cd01174 278 ALSVTRPGAQ 287 (292)
T ss_pred HHHhcCcCCC
Confidence 9999999984
No 11
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=1.6e-43 Score=334.24 Aligned_cols=300 Identities=18% Similarity=0.200 Sum_probs=236.5
Q ss_pred CcceEEEecCceeeeEeecCHHHHHHcCCCCCceEEecCcccchHHHHhc-----------cCCceeecCchhHHHHHHH
Q 019402 3 YEGILLGMGNPLLDISAVVDEEFLKKYDIKLNNAILAEDKHLPMYDELAS-----------KENVEYIAGGATQNSIKVA 71 (341)
Q Consensus 3 ~~~~i~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-----------~~~~~~~~GG~~~n~a~~l 71 (341)
+|.+|+++|++++|+++.++ ++|.+++... .......+|| ++|+|++|
T Consensus 71 ~~~~vl~lG~~~vD~i~~V~--------------------~lP~~~~~~~~~~~~~~~~~~~~~~~~~~GG-~~NvAvaL 129 (470)
T PLN02341 71 KEIDVATLGNLCVDIVLPVP--------------------ELPPPSREERKAYMEELAASPPDKKSWEAGG-NCNFAIAA 129 (470)
T ss_pred ccccEEEECCcceeEEEecC--------------------CCCCCCHHHHHHHHHhhcccccccceecCCh-HHHHHHHH
Confidence 35689999999999999998 5777665321 1344556788 78999999
Q ss_pred HHHhCCCCceEEEEeecCCchhHHHHHHHHhcCCceeEeec-C--------CCCcceEEEEEe-CCeeceeecccccccC
Q 019402 72 QWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYED-E--------SAPTGTCAVCVV-GGERSLVANLSAANCY 141 (341)
Q Consensus 72 ~~l~~lg~~v~li~~vG~D~~g~~i~~~l~~~gi~~~~~~~-~--------~~~t~~~~~~~~-~g~~~~~~~~~~~~~~ 141 (341)
++ | |.++.++|.+|+|.+|+++++.|++.||++.++.. . ..+|+.++++++ +|++.+..........
T Consensus 130 ar-L--G~~v~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~vlvd~~ger~~~~~~~~~~~~ 206 (470)
T PLN02341 130 AR-L--GLRCSTIGHVGDEIYGKFLLDVLAEEGISVVGLIEGTDAGDSSSASYETLLCWVLVDPLQRHGFCSRADFGPEP 206 (470)
T ss_pred HH-c--CCCeEEEEEecCcHHHHHHHHHHHHcCCeeeEEEecCccccccccCCCceeEEEEEcCCCCceeeecccccccc
Confidence 98 4 59999999999999999999999999999999853 3 246888888887 5776654332222222
Q ss_pred CcccCCC--chhHhhhhcceEEEEecccc-ccCHHHHHHHHHHHHhcCCeEEEeCCcHH---HH--hhhhHHHHhhCCCC
Q 019402 142 KSEHLKR--PEIWSIVEKAKYYYIAGFFL-TVSPESIQMVAEHAAAKNKVFMMNLSAPF---IC--EFFREPQEKALPYM 213 (341)
Q Consensus 142 ~~~~~~~--~~~~~~~~~~~~v~i~~~~~-~~~~~~~~~~~~~~~~~~~~v~~d~~~~~---~~--~~~~~~~~~~l~~~ 213 (341)
..+.+.. .+..+.++++|++|++++.+ .++++.+..+++.+++.|.++++|+.... |. +..++.+.++++++
T Consensus 207 ~~~~~~~l~~~~~~~l~~adiv~lsg~~~~~~~~~~~~~~~~~Ak~~g~~V~~Dp~~~~~~~~~~~~~~~~~l~~~L~~~ 286 (470)
T PLN02341 207 AFSWISKLSAEAKMAIRQSKALFCNGYVFDELSPSAIASAVDYAIDVGTAVFFDPGPRGKSLLVGTPDERRALEHLLRMS 286 (470)
T ss_pred chhhhhcccHHHHhhhhcCCEEEEeceeCCcCCHHHHHHHHHHHHHcCCEEEEeCCCcccccccChHHHHHHHHHHHhhC
Confidence 2122111 22345688999999998763 56788899999999999999999996421 11 11234578899999
Q ss_pred cEEEcCHHHHHHHHhhcCCCCCCHHHHHHHHhcCCCCCCCC--ccEEEEeeCCCCEEEEeCCeEEEEecccCCCCcccCC
Q 019402 214 DYVFGNETEARTFAKVHGWETDNVEEIALKISQWPKASGTH--KRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDT 291 (341)
Q Consensus 214 dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~vvvt~G~~G~~~~~~~~~~~v~~~~~~~~~vvdt 291 (341)
|++++|++|++.+++ .++.+++++.+ ...+ .+.||||+|++|++++++++.+++|++++ +++||
T Consensus 287 Dil~~Ne~Ea~~l~g-----~~~~~~a~~~l------~~~g~~~k~VVVTlG~~Ga~~~~~~~~~~vpa~~v---~vVDT 352 (470)
T PLN02341 287 DVLLLTSEEAEALTG-----IRNPILAGQEL------LRPGIRTKWVVVKMGSKGSILVTRSSVSCAPAFKV---NVVDT 352 (470)
T ss_pred CEEEecHHHHHHHhC-----CCCHHHHHHHH------HhcCCCCCEEEEeeCCCCeEEEECCeeEEeCCCCc---CCCCC
Confidence 999999999999986 35677888887 3334 57999999999999999988888887755 89999
Q ss_pred CCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhhhhhhccc--cCCCCCCC
Q 019402 292 NGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQRSGC--TYPPKPEF 340 (341)
Q Consensus 292 tGAGDaf~a~~~~~l~~g~~~~~a~~~A~~~aa~~v~~~g~--~~p~~~e~ 340 (341)
|||||+|+|||++++++|+++++|+++|+++|++++++.|+ .+|+.+|+
T Consensus 353 tGAGDaF~Agfl~gll~G~~l~eal~~A~a~aA~~v~~~Ga~~~~p~~~ev 403 (470)
T PLN02341 353 VGCGDSFAAAIALGYIHNLPLVNTLTLANAVGAATAMGCGAGRNVATLEKV 403 (470)
T ss_pred cCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcCCCCCCCCHHHH
Confidence 99999999999999999999999999999999999999997 47766554
No 12
>cd01944 YegV_kinase_like YegV-like sugar kinase. Found only in bacteria, YegV-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=1.2e-43 Score=317.73 Aligned_cols=284 Identities=24% Similarity=0.323 Sum_probs=230.0
Q ss_pred eEEEecCceeeeEeecCHHHHHHcCCCCCceEEecCcccchHHHHhccCCceeecCchhHHHHHHHHHHhCCCCceEEEE
Q 019402 6 ILLGMGNPLLDISAVVDEEFLKKYDIKLNNAILAEDKHLPMYDELASKENVEYIAGGATQNSIKVAQWMLQIPGATSYIG 85 (341)
Q Consensus 6 ~i~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~~lg~~v~li~ 85 (341)
+|+++|++++|++..++ ++|.++...........+|| +.|+|.+|++ + |.++.++|
T Consensus 1 ~i~~iG~~~~D~i~~~~--------------------~~~~~~~~~~~~~~~~~~GG-~~Nva~~l~~-l--G~~~~~~~ 56 (289)
T cd01944 1 KVLVIGAAVVDIVLDVD--------------------KLPASGGDIEAKSKSYVIGG-GFNVMVAASR-L--GIPTVNAG 56 (289)
T ss_pred CeEEEcceeEEEEeecc--------------------cCCCCCCccccceeeeccCc-HHHHHHHHHH-c--CCCeEEEE
Confidence 58999999999999987 57888888888888999999 9999999998 4 59999999
Q ss_pred eecCCchhHHHHHHHHhcCCceeEeecCCCCcceEEEEEe-CCeeceeecccccccCCcccCCCchhHhhhhcceEEEEe
Q 019402 86 CIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVV-GGERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYIA 164 (341)
Q Consensus 86 ~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~ 164 (341)
.+|+|.+|+++++.|++.||+++++...+.+|+.+++.++ +|+|+++.+.++...+++++++. ..+.+++++|++
T Consensus 57 ~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 132 (289)
T cd01944 57 PLGNGNWADQIRQAMRDEGIEILLPPRGGDDGGCLVALVEPDGERSFISISGAEQDWSTEWFAT----LTVAPYDYVYLS 132 (289)
T ss_pred EecCChHHHHHHHHHHHcCCccccccccCCCCeEEEEEEcCCCceEEEEeCCccCCCCHHHhcc----ccCCCCCEEEEe
Confidence 9999999999999999999999998666666777767776 68998877777666666666653 236789999999
Q ss_pred cccccc---CHHHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCCCCcEEEcCHHHHHHHHhhcCCCCCCHHHHH
Q 019402 165 GFFLTV---SPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGWETDNVEEIA 241 (341)
Q Consensus 165 ~~~~~~---~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~ 241 (341)
++.+.. ..+.+.++++.++ .+.++++|+....+ ....+.+.++++++|++++|++|++.+++.. ......++
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~D~~~~~~-~~~~~~~~~~l~~~d~~~~n~~E~~~l~g~~---~~~~~~~~ 207 (289)
T cd01944 133 GYTLASENASKVILLEWLEALP-AGTTLVFDPGPRIS-DIPDTILQALMAKRPIWSCNREEAAIFAERG---DPAAEASA 207 (289)
T ss_pred CccccCcchhHHHHHHHHHhcc-CCCEEEEcCccccc-ccCHHHHHHHHhcCCEEccCHHHHHHHhCCC---CcchHHHH
Confidence 876422 2455666666644 56889999963321 1123557889999999999999999998742 12223445
Q ss_pred HHHhcCCCCCCCCccEEEEeeCCCCEEEEe-CCeEEEEecccCCCCcccCCCCcchhhHHHHHHHHhcCCCHHHHHHHHH
Q 019402 242 LKISQWPKASGTHKRITVITQGADPVVVAE-DGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGC 320 (341)
Q Consensus 242 ~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~-~~~~~~v~~~~~~~~~vvdttGAGDaf~a~~~~~l~~g~~~~~a~~~A~ 320 (341)
+.+ ...+++.||||+|++|++++. ++..+++|++++ +++|||||||+|+|||++++++|+++++|+++|+
T Consensus 208 ~~~------~~~~~~~vvvt~G~~Ga~~~~~~~~~~~~~~~~~---~vvDt~GAGDaf~ag~l~~~~~g~~~~~a~~~a~ 278 (289)
T cd01944 208 LRI------YAKTAAPVVVRLGSNGAWIRLPDGNTHIIPGFKV---KAVDTIGAGDTHAGGMLAGLAKGMSLADAVLLAN 278 (289)
T ss_pred HHH------HhccCCeEEEEECCCcEEEEecCCCeEEecCCCC---CCccCCCchHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 566 456678899999999999988 556677776654 8899999999999999999999999999999999
Q ss_pred HHHhhhhhhcc
Q 019402 321 YAANVVIQRSG 331 (341)
Q Consensus 321 ~~aa~~v~~~g 331 (341)
++|+.++++.|
T Consensus 279 a~aa~~~~~~G 289 (289)
T cd01944 279 AAAAIVVTRSG 289 (289)
T ss_pred HHHHhhhccCC
Confidence 99999999876
No 13
>PRK09850 pseudouridine kinase; Provisional
Probab=100.00 E-value=6.9e-44 Score=322.56 Aligned_cols=295 Identities=17% Similarity=0.219 Sum_probs=230.4
Q ss_pred CCCcceEEEecCceeeeEeecCHHHHHHcCCCCCceEEecCcccchHHHHhccCCceeecCchhHHHHHHHHHHhCCCCc
Q 019402 1 MAYEGILLGMGNPLLDISAVVDEEFLKKYDIKLNNAILAEDKHLPMYDELASKENVEYIAGGATQNSIKVAQWMLQIPGA 80 (341)
Q Consensus 1 m~~~~~i~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~~lg~~ 80 (341)
|..+++|+|+|.+++|++...+ . |.++...........+||++.|+|.++++ + |.+
T Consensus 1 ~~~~~~i~~iG~~~vD~~~~~~--------------------~-~~~~~~~~~~~~~~~~GG~~~NvA~~l~~-l--G~~ 56 (313)
T PRK09850 1 MREKDYVVIIGSANIDVAGYSH--------------------E-SLNYADSNPGKIKFTPGGVGRNIAQNLAL-L--GNK 56 (313)
T ss_pred CCCCCcEEEECcEEEeeeccCC--------------------C-cCcCCCCCceEEEEeCCcHHHHHHHHHHH-c--CCC
Confidence 6678899999999999998764 1 22222233455778899999999999998 4 599
Q ss_pred eEEEEeecCCchhHHHHHHHHhcCCceeEe-ecCCCCcceEEEEEe-CCeeceeec-ccccccCCcccCCCchhHhhhhc
Q 019402 81 TSYIGCIGKDKFGEEMKKNSTAAGVNVKYY-EDESAPTGTCAVCVV-GGERSLVAN-LSAANCYKSEHLKRPEIWSIVEK 157 (341)
Q Consensus 81 v~li~~vG~D~~g~~i~~~l~~~gi~~~~~-~~~~~~t~~~~~~~~-~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 157 (341)
+.++|.+|+|.+|+++++.|++.||+++++ +..+.+|+.++++++ +|++.+... .++...++++.+.. ..+.+++
T Consensus 57 ~~~ig~vG~D~~g~~i~~~l~~~gVd~~~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 134 (313)
T PRK09850 57 AWLLSAVGSDFYGQSLLTQTNQSGVYVDKCLIVPGENTSSYLSLLDNTGEMLVAINDMNISNAITAEYLAQ--HREFIQR 134 (313)
T ss_pred eEEEEEecCchhHHHHHHHHHHcCCCchheeecCCCCceEEEEEecCCCCEEEEecCchHhhhCCHHHHHH--HHHHHhc
Confidence 999999999999999999999999999987 456677999999887 578776543 23334444443321 2345788
Q ss_pred ceEEEEeccccccCHHHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCCCCcEEEcCHHHHHHHHhhcCCCCCCH
Q 019402 158 AKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGWETDNV 237 (341)
Q Consensus 158 ~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~ 237 (341)
++++++++ ..+.+.+..+++.+ .++++++|+... |. ...+.++++++|++++|++|+..+++....+.++.
T Consensus 135 ~~~v~~~~---~~~~~~~~~~~~~~--~g~~v~~D~~~~-~~---~~~~~~~l~~~dil~~N~~Ea~~l~g~~~~~~~~~ 205 (313)
T PRK09850 135 AKVIVADC---NISEEALAWILDNA--ANVPVFVDPVSA-WK---CVKVRDRLNQIHTLKPNRLEAETLSGIALSGREDV 205 (313)
T ss_pred CCEEEEeC---CCCHHHHHHHHHhc--cCCCEEEEcCCH-HH---HHHHHhhhccceEEccCHHHHHHHhCCCCCCHHHH
Confidence 99999976 35666777776643 578999999753 21 13366788999999999999999987543334456
Q ss_pred HHHHHHHhcCCCCCCCCccEEEEeeCCCCEEEEeC-CeEEEEecccCCCCcccCCCCcchhhHHHHHHHHhcCCCHHHHH
Q 019402 238 EEIALKISQWPKASGTHKRITVITQGADPVVVAED-GKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCV 316 (341)
Q Consensus 238 ~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~-~~~~~v~~~~~~~~~vvdttGAGDaf~a~~~~~l~~g~~~~~a~ 316 (341)
+++++.+ ...+++.+|||+|++|++++.+ ++..++|++++ +++|||||||+|+|||+++|++|+++++|+
T Consensus 206 ~~~~~~l------~~~g~~~vvvT~G~~G~~~~~~~~~~~~~~~~~~---~vvDttGAGDaF~agfi~~l~~g~~~~eal 276 (313)
T PRK09850 206 AKVAAWF------HQHGLNRLVLSMGGDGVYYSDISGESGWSAPIKT---NVINVTGAGDAMMAGLASCWVDGMPFAESV 276 (313)
T ss_pred HHHHHHH------HHcCCCEEEEEeCCceEEEEcCCCCeEecCCCCc---ccccCCCcHHHHHHHHHHHHHcCCCHHHHH
Confidence 7777777 4567889999999999999874 44556676544 899999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhccc--cCCCCCC
Q 019402 317 RTGCYAANVVIQRSGC--TYPPKPE 339 (341)
Q Consensus 317 ~~A~~~aa~~v~~~g~--~~p~~~e 339 (341)
++|+++|+.++++.+. ..|++++
T Consensus 277 ~~a~a~aa~~~~~~~~~~~~~~~~~ 301 (313)
T PRK09850 277 RFAQGCSSMALSCEYTNNPDLSIAN 301 (313)
T ss_pred HHHHHHHHHHhcCCCCCCcccCHHH
Confidence 9999999999999987 4555544
No 14
>cd01945 ribokinase_group_B Ribokinase-like subgroup B. Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. .
Probab=100.00 E-value=1.7e-43 Score=315.95 Aligned_cols=277 Identities=23% Similarity=0.330 Sum_probs=229.6
Q ss_pred eEEEecCceeeeEeecCHHHHHHcCCCCCceEEecCcccchHHHHhccCCceeecCchhHHHHHHHHHHhCCCCceEEEE
Q 019402 6 ILLGMGNPLLDISAVVDEEFLKKYDIKLNNAILAEDKHLPMYDELASKENVEYIAGGATQNSIKVAQWMLQIPGATSYIG 85 (341)
Q Consensus 6 ~i~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~~lg~~v~li~ 85 (341)
+|+++|++++|++..++ ++|..++..+.......+||.+.|+|.+|++ + |.++.++|
T Consensus 1 ~i~~iG~~~iD~~~~~~--------------------~~p~~~~~~~~~~~~~~~GG~~~NvA~~l~~-l--G~~~~~~~ 57 (284)
T cd01945 1 RVLGVGLAVLDLIYLVA--------------------SFPGGDGKIVATDYAVIGGGNAANAAVAVAR-L--GGQARLIG 57 (284)
T ss_pred CEEEECcceeEEEEEec--------------------cCCCCCCeEEEeEEEEecCCHHHHHHHHHHH-c--CCCeEEEE
Confidence 58999999999999987 5777777778888999999999999999998 4 49999999
Q ss_pred eecCCchhHHHHHHHHhcCCceeEeec-CCCCcceEEEEEeCCeeceeecccccccCCcccCCCchhHhhhhcceEEEEe
Q 019402 86 CIGKDKFGEEMKKNSTAAGVNVKYYED-ESAPTGTCAVCVVGGERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYIA 164 (341)
Q Consensus 86 ~vG~D~~g~~i~~~l~~~gi~~~~~~~-~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~ 164 (341)
.+|+|++|+.+++.|++.||++.++.. .+.+|+.+++...+|+++.+.+.+....+..+++.. ..++++|++|++
T Consensus 58 ~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~i~ 133 (284)
T cd01945 58 VVGDDAIGRLILAELAAEGVDTSFIVVAPGARSPISSITDITGDRATISITAIDTQAAPDSLPD----AILGGADAVLVD 133 (284)
T ss_pred EecCchHHHHHHHHHHHcCCCccceeecCCCCCccEEEEccCCCceEEEecCCCCCCCcccCCH----HHhCcCCEEEEc
Confidence 999999999999999999999999864 455677776633467777766666666666666653 457999999998
Q ss_pred ccccccCHHHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCCCCcEEEcCHHHHHHHHhhcCCCCCCHHHHHHHH
Q 019402 165 GFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGWETDNVEEIALKI 244 (341)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l 244 (341)
+. .++...++++.++++|.++.+|+.... ..+ +.++++++|++++|++|++.+++. .+. ++++.+
T Consensus 134 ~~----~~~~~~~~~~~~~~~g~~v~~~~~~~~----~~~-~~~~~~~~dil~~n~~e~~~l~~~-----~~~-~~~~~l 198 (284)
T cd01945 134 GR----QPEAALHLAQEARARGIPIPLDLDGGG----LRV-LEELLPLADHAICSENFLRPNTGS-----ADD-EALELL 198 (284)
T ss_pred CC----CHHHHHHHHHHHHHcCCCeeEeccCCc----ccc-hHHHhccCCEEEeChhHHhhhcCC-----CHH-HHHHHH
Confidence 74 346788899999999986555543222 122 677889999999999999988752 222 666666
Q ss_pred hcCCCCCCCCccEEEEeeCCCCEEEEe-CCeEEEEecccCCCCcccCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 019402 245 SQWPKASGTHKRITVITQGADPVVVAE-DGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAA 323 (341)
Q Consensus 245 ~~~~~~~~~~~~~vvvt~G~~G~~~~~-~~~~~~v~~~~~~~~~vvdttGAGDaf~a~~~~~l~~g~~~~~a~~~A~~~a 323 (341)
...+++.+|||+|++|+++++ +++.+++|++++ +++||+||||+|+|||+++|++|+++++|+++|+++|
T Consensus 199 ------~~~~~~~vivt~G~~G~~~~~~~~~~~~~~~~~~---~vvDt~GAGDaf~ag~l~~l~~g~~~~~al~~a~~~A 269 (284)
T cd01945 199 ------ASLGIPFVAVTLGEAGCLWLERDGELFHVPAFPV---EVVDTTGAGDVFHGAFAHALAEGMPLREALRFASAAA 269 (284)
T ss_pred ------HhcCCcEEEEEECCCCeEEEcCCCCEEecCCCcc---ccccCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 556789999999999999998 677888887654 8999999999999999999999999999999999999
Q ss_pred hhhhhhcccc
Q 019402 324 NVVIQRSGCT 333 (341)
Q Consensus 324 a~~v~~~g~~ 333 (341)
+.++++.|+.
T Consensus 270 a~~~~~~G~~ 279 (284)
T cd01945 270 ALKCRGLGGR 279 (284)
T ss_pred HHHHhccCCc
Confidence 9999999984
No 15
>PLN02967 kinase
Probab=100.00 E-value=5.6e-43 Score=330.27 Aligned_cols=312 Identities=15% Similarity=0.194 Sum_probs=234.2
Q ss_pred cceEEEecCceeeeEeecCHH-HHHHcCCCCCceEEecCcccchHHHHhccCCceeecCchhHHHHHHHHHHhCCCCceE
Q 019402 4 EGILLGMGNPLLDISAVVDEE-FLKKYDIKLNNAILAEDKHLPMYDELASKENVEYIAGGATQNSIKVAQWMLQIPGATS 82 (341)
Q Consensus 4 ~~~i~~iG~~~~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~~lg~~v~ 82 (341)
.+.|+|||++.+|++...... -+..+. .+--..+..+++......+||.+.|+|.+|++ ||.++.
T Consensus 196 ~~~V~~iGe~l~D~~p~g~~~~~l~~~~-----------~~~~~~~~~s~~~~~~~~~GGa~aNVAvaLAR---LG~~v~ 261 (581)
T PLN02967 196 PPLVCCFGAAQHAFVPSGRPANRLLDYE-----------IHERMKDAFWAPEKFVRAPGGSAGGVAIALAS---LGGKVA 261 (581)
T ss_pred CCeEEEECchhheecccCccchhhhhcc-----------ccccccccccCccceeeecCcHHHHHHHHHHH---CCCCEE
Confidence 457999999999997642110 000000 00000111345577888999999999999998 459999
Q ss_pred EEEeecCCchhHHHHHHHHhcCCceeEee-cCCCCcceEEEEEe-CCeecee-ecccccccCCcccCCCchhHhhhhcce
Q 019402 83 YIGCIGKDKFGEEMKKNSTAAGVNVKYYE-DESAPTGTCAVCVV-GGERSLV-ANLSAANCYKSEHLKRPEIWSIVEKAK 159 (341)
Q Consensus 83 li~~vG~D~~g~~i~~~l~~~gi~~~~~~-~~~~~t~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (341)
|+|.||+|.+|+++++.|++.||+++++. ..+.+|+.+++.++ +|+++++ ..++++..++++++.. ..+.+++
T Consensus 262 fIg~VGdD~~G~~ll~~L~~~GVDts~v~~~~~~~Tgla~V~vd~~Gerr~~~~~~gAd~~L~~~di~~----~~l~~A~ 337 (581)
T PLN02967 262 FMGKLGDDDYGQAMLYYLNVNKVQTRSVCIDGKRATAVSTMKIAKRGRLKTTCVKPCAEDSLSKSEINI----DVLKEAK 337 (581)
T ss_pred EEEEeCCCHHHHHHHHHHHHcCCcccceEecCCCCCcEEEEEECCCCceEEEEecCChhhhCChhhcCH----hHhcCCC
Confidence 99999999999999999999999999985 56678999999987 6887764 4567777788777653 5688999
Q ss_pred EEEEecccc--ccCHHHHHHHHHHHHhcCCeEEEeCC--cHHHH--hhhhHHHHhhCCCCcEEEcCHHHHHHHHhhcCCC
Q 019402 160 YYYIAGFFL--TVSPESIQMVAEHAAAKNKVFMMNLS--APFIC--EFFREPQEKALPYMDYVFGNETEARTFAKVHGWE 233 (341)
Q Consensus 160 ~v~i~~~~~--~~~~~~~~~~~~~~~~~~~~v~~d~~--~~~~~--~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~ 233 (341)
++|+++..+ ....+.+..+++.+++.|++++||+. .+.|. ....+.+.++++++||+++|++|+..+++.....
T Consensus 338 i~hfgg~~ll~e~~~~all~alk~Ak~~Gv~VsFDpNlR~~lw~~~e~~~e~i~elL~~aDILk~NeeEl~~LtG~~~~~ 417 (581)
T PLN02967 338 MFYFNTHSLLDPTMRSTTLRAIKISKKLGGVIFYDLNLPLPLWSSSEETKSFIQEAWNLADIIEVTKQELEFLCGIEPTE 417 (581)
T ss_pred EEEEeCchhcccchHHHHHHHHHHHHHCCCEEEEECCCCcccccchHHHHHHHHHHHHhCCEEEECHHHHHHHhCCCccc
Confidence 999998753 22347899999999999999989874 34453 2244568889999999999999999998632100
Q ss_pred CC------------CHHHHHHHHhcCCCCCCCCccEEEEeeCCCCEEEEeCCe---EEEEecccCCCCcccCCCCcchhh
Q 019402 234 TD------------NVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGK---VKLFPVILLPKEKLVDTNGAGDAF 298 (341)
Q Consensus 234 ~~------------~~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~---~~~v~~~~~~~~~vvdttGAGDaf 298 (341)
.. ...+.+..+ ...+++.||||+|++|++++.++. ...++++++ ++.+||||||||+|
T Consensus 418 e~~~~~~~~~~~~~~~~e~a~~l------~~~g~k~VVVTlG~~Ga~~~~~~~~~~v~~~~a~~V-~V~vVDTTGAGDAF 490 (581)
T PLN02967 418 EFDTKDNDKSKFVHYSPEVVAPL------WHENLKVLFVTNGTSKIHYYTKEHNGAVHGMEDAPI-TPFTSDMSASGDGI 490 (581)
T ss_pred cccccccchhccccchHHHHHHH------HhCCCCEEEEEECccceEEEECCCceeEeeccCCCC-CCCCCCCCchhHHH
Confidence 00 012334455 345789999999999999998754 233343444 22369999999999
Q ss_pred HHHHHHHHhcC-------CCHHHHHHHHHHHHhhhhhhccc--cCCCCCCC
Q 019402 299 VGGFLSQLVQE-------KPVEDCVRTGCYAANVVIQRSGC--TYPPKPEF 340 (341)
Q Consensus 299 ~a~~~~~l~~g-------~~~~~a~~~A~~~aa~~v~~~g~--~~p~~~e~ 340 (341)
+|||+++|+++ +++++|++||+++||+++++.|+ .+|+.+++
T Consensus 491 ~AGfL~~Ll~g~~~~~g~~~LeeaLrfAnAaAAL~vt~~GA~~glPt~~eV 541 (581)
T PLN02967 491 VAGLMRMLTVQPHLITDKGYLEKTIKYAIDCGVIDQWLLARTRGFPPKEDM 541 (581)
T ss_pred HHHHHHHHHhccCcccccccHHHHHHHHHHHHHHHhccCCCccCCCCHHHH
Confidence 99999999984 67999999999999999999999 57766553
No 16
>PLN02323 probable fructokinase
Probab=100.00 E-value=8.8e-43 Score=317.71 Aligned_cols=295 Identities=22% Similarity=0.302 Sum_probs=233.3
Q ss_pred CCcceEEEecCceeeeEeecCHHHHHHcCCCCCceEEecCcccchHHHHhccCCceeecCchhHHHHHHHHHHhCCCCce
Q 019402 2 AYEGILLGMGNPLLDISAVVDEEFLKKYDIKLNNAILAEDKHLPMYDELASKENVEYIAGGATQNSIKVAQWMLQIPGAT 81 (341)
Q Consensus 2 ~~~~~i~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~~lg~~v 81 (341)
+++++|+++|++++|++..++ +.|. .........+||++.|+|.+|++ + |.++
T Consensus 8 ~~~~~i~~iG~~~vD~~~~~~--------------------~~~~----~~~~~~~~~~GG~~~NvA~~la~-L--G~~~ 60 (330)
T PLN02323 8 AESSLVVCFGEMLIDFVPTVS--------------------GVSL----AEAPAFKKAPGGAPANVAVGISR-L--GGSS 60 (330)
T ss_pred CCCCcEEEechhhhhhccCCC--------------------CCCc----ccccceeecCCChHHHHHHHHHh-c--CCce
Confidence 356789999999999998665 2332 12455678999999999999998 4 5999
Q ss_pred EEEEeecCCchhHHHHHHHHhcCCceeEee-cCCCCcceEEEEEe-CCeeceeecc--cccccCCcccCCCchhHhhhhc
Q 019402 82 SYIGCIGKDKFGEEMKKNSTAAGVNVKYYE-DESAPTGTCAVCVV-GGERSLVANL--SAANCYKSEHLKRPEIWSIVEK 157 (341)
Q Consensus 82 ~li~~vG~D~~g~~i~~~l~~~gi~~~~~~-~~~~~t~~~~~~~~-~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 157 (341)
.++|.+|+|.+|+++++.|++.||+++++. ..+.+|+.+++..+ +|+|+++.+. +++..++++++.. +.++.
T Consensus 61 ~~i~~vG~D~~g~~i~~~L~~~GI~~~~v~~~~~~~t~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~~~----~~~~~ 136 (330)
T PLN02323 61 AFIGKVGDDEFGHMLADILKKNGVNNEGVRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLRESELDL----DLIRK 136 (330)
T ss_pred eEEEEecCChhHHHHHHHHHHcCCCCcceEEcCCCCceEEEEEECCCCceeEEeecCCchhccCChHHCCh----HHHcc
Confidence 999999999999999999999999999985 56667888888876 6888876653 4444666666653 56788
Q ss_pred ceEEEEecccccc--CHHHHHHHHHHHHhcCCeEEEeCCc--HHHH--hhhhHHHHhhCCCCcEEEcCHHHHHHHHhhcC
Q 019402 158 AKYYYIAGFFLTV--SPESIQMVAEHAAAKNKVFMMNLSA--PFIC--EFFREPQEKALPYMDYVFGNETEARTFAKVHG 231 (341)
Q Consensus 158 ~~~v~i~~~~~~~--~~~~~~~~~~~~~~~~~~v~~d~~~--~~~~--~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~ 231 (341)
++++++++..... ....+..+++.+++.|.++++|+.. ..|. ...++.+.++++++|++++|++|+..+++..
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~g~~- 215 (330)
T PLN02323 137 AKIFHYGSISLITEPCRSAHLAAMKIAKEAGALLSYDPNLRLPLWPSAEAAREGIMSIWDEADIIKVSDEEVEFLTGGD- 215 (330)
T ss_pred CCEEEEechhccCchHHHHHHHHHHHHHHcCCEEEEcCCCChhhccCHHHHHHHHHHHHHhCCEEEcCHHHHHHHhCCC-
Confidence 9999988765321 2255678899999999999999863 2221 1234557788899999999999999998642
Q ss_pred CCCCCHHHHHHHHhcCCCCCCCCccEEEEeeCCCCEEEEeCCeEEEEecccCCCCcccCCCCcchhhHHHHHHHHhcCCC
Q 019402 232 WETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKP 311 (341)
Q Consensus 232 ~~~~~~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~v~~~~~~~~~vvdttGAGDaf~a~~~~~l~~g~~ 311 (341)
..+..++. ++ +..+++.+|||+|++|++++.+++.+++|++++ +++|||||||+|+|||++++++|++
T Consensus 216 --~~~~~~~~-~~------~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~v---~vvDttGAGDaf~Agfl~~l~~g~~ 283 (330)
T PLN02323 216 --DPDDDTVV-KL------WHPNLKLLLVTEGEEGCRYYTKDFKGRVEGFKV---KAVDTTGAGDAFVGGLLSQLAKDLS 283 (330)
T ss_pred --CccHHHHH-HH------HhcCCCEEEEecCCCceEEEeCCCceEeCCccC---CCCCCCCcHHHHHHHHHHHHHcCCc
Confidence 12223333 33 345788999999999999998887778887655 8899999999999999999999986
Q ss_pred -------HHHHHHHHHHHHhhhhhhccc--cCCCCCCC
Q 019402 312 -------VEDCVRTGCYAANVVIQRSGC--TYPPKPEF 340 (341)
Q Consensus 312 -------~~~a~~~A~~~aa~~v~~~g~--~~p~~~e~ 340 (341)
+++|+++|+++|+++|++.|+ .+|+.+|+
T Consensus 284 ~~~~~~~l~~al~~a~a~Aa~~v~~~g~~~~~~~~~~v 321 (330)
T PLN02323 284 LLEDEERLREALRFANACGAITTTERGAIPALPTKEAV 321 (330)
T ss_pred cccchHHHHHHHHHHHHHHHHHHhccCCccCCCCHHHH
Confidence 899999999999999999999 46766554
No 17
>TIGR02152 D_ribokin_bact ribokinase. This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not.
Probab=100.00 E-value=1.6e-42 Score=311.10 Aligned_cols=288 Identities=25% Similarity=0.382 Sum_probs=243.4
Q ss_pred cCceeeeEeecCHHHHHHcCCCCCceEEecCcccchHHHHhccCCceeecCchhHHHHHHHHHHhCCCCceEEEEeecCC
Q 019402 11 GNPLLDISAVVDEEFLKKYDIKLNNAILAEDKHLPMYDELASKENVEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKD 90 (341)
Q Consensus 11 G~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~~lg~~v~li~~vG~D 90 (341)
|.+++|++..++ ++|.+++.....+...++||.+.|+|.+|++ + |.++.++|.+|+|
T Consensus 1 G~~~~D~~~~~~--------------------~~p~~~~~~~~~~~~~~~GG~~~Nva~~l~~-l--g~~~~~~~~vG~D 57 (293)
T TIGR02152 1 GSINMDLVLRTD--------------------RLPKPGETVHGHSFQIGPGGKGANQAVAAAR-L--GAEVSMIGKVGDD 57 (293)
T ss_pred CCceEeEEEEeC--------------------CCCCCCCcEecCCceecCCCcHHHHHHHHHH-C--CCCEEEEEEecCC
Confidence 788999999887 6788888888999999999999999999998 4 5999999999999
Q ss_pred chhHHHHHHHHhcCCceeEee-cCCCCcceEEEEEe-CCeeceeecccccccCCcccCCCchhHhhhhcceEEEEecccc
Q 019402 91 KFGEEMKKNSTAAGVNVKYYE-DESAPTGTCAVCVV-GGERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYIAGFFL 168 (341)
Q Consensus 91 ~~g~~i~~~l~~~gi~~~~~~-~~~~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~ 168 (341)
.+|+.+++.|++.||++++++ ..+.+|+.+++.++ +|+|+++.+.++...++++++.. ..+.+..+|++++++
T Consensus 58 ~~g~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--- 132 (293)
T TIGR02152 58 AFGDELLENLKSNGIDTEYVGTVKDTPTGTAFITVDDTGENRIVVVAGANAELTPEDIDA--AEALIAESDIVLLQL--- 132 (293)
T ss_pred ccHHHHHHHHHHcCCCeeEEEEcCCCCCceEEEEEcCCCCEEEEEECCcCCcCCHHHHHH--HHhhhccCCEEEEec---
Confidence 999999999999999999996 45567999988887 58888776666655666665542 335678999999875
Q ss_pred ccCHHHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCCCCcEEEcCHHHHHHHHhhcCCCCCCHHHHHHHHhcCC
Q 019402 169 TVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGWETDNVEEIALKISQWP 248 (341)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~~ 248 (341)
+.+.+.+..+++.+++++.++++|+.... .....++++++|++++|++|++.+++....+.++.+++++.+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~v~~D~~~~~-----~~~~~~~~~~~d~l~~n~~E~~~l~~~~~~~~~~~~~~~~~l---- 203 (293)
T TIGR02152 133 EIPLETVLEAAKIAKKHGVKVILNPAPAI-----KDLDDELLSLVDIITPNETEAEILTGIEVTDEEDAEKAAEKL---- 203 (293)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEECCcCc-----ccchHHHHhcCCEEccCHHHHHHHhCCCCCCcchHHHHHHHH----
Confidence 45678889999999999999999996431 111356788999999999999999875544445677788888
Q ss_pred CCCCCCccEEEEeeCCCCEEEEeCCeEEEEecccCCCCcccCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhhhhh
Q 019402 249 KASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQ 328 (341)
Q Consensus 249 ~~~~~~~~~vvvt~G~~G~~~~~~~~~~~v~~~~~~~~~vvdttGAGDaf~a~~~~~l~~g~~~~~a~~~A~~~aa~~v~ 328 (341)
...|++.++||+|++|++++++++.++++++++ +++||+||||+|+|||++++++|+++++|+++|+++|+.+++
T Consensus 204 --~~~g~~~vvvt~G~~g~~~~~~~~~~~~~~~~~---~~vdt~GAGDaf~Ag~l~~l~~g~~~~~al~~a~~~Aa~~~~ 278 (293)
T TIGR02152 204 --LEKGVKNVIITLGSKGALLVSKDESKLIPAFKV---KAVDTTAAGDTFNGAFAVALAEGKSLEDAIRFANAAAAISVT 278 (293)
T ss_pred --HHcCCCeEEEEeCCCceEEEeCCceeEccCCCC---ceeCCCCcHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc
Confidence 556789999999999999998888888776654 789999999999999999999999999999999999999999
Q ss_pred hcccc--CCCCCCC
Q 019402 329 RSGCT--YPPKPEF 340 (341)
Q Consensus 329 ~~g~~--~p~~~e~ 340 (341)
+.|+. +|+.+|+
T Consensus 279 ~~G~~~~~~~~~~~ 292 (293)
T TIGR02152 279 RKGAQSSIPYLEEV 292 (293)
T ss_pred ccCcccCCCChHHc
Confidence 99996 4887765
No 18
>cd01942 ribokinase_group_A Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=2.3e-42 Score=307.88 Aligned_cols=277 Identities=23% Similarity=0.262 Sum_probs=226.9
Q ss_pred eEEEecCceeeeEeecCHHHHHHcCCCCCceEEecCcccchHHHHhccCCceeecCchhHHHHHHHHHHhCCCCceEEEE
Q 019402 6 ILLGMGNPLLDISAVVDEEFLKKYDIKLNNAILAEDKHLPMYDELASKENVEYIAGGATQNSIKVAQWMLQIPGATSYIG 85 (341)
Q Consensus 6 ~i~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~~lg~~v~li~ 85 (341)
+|+++|++++|++..++ ++|..++.....+....+||++.|+|.++++ + |.++.++|
T Consensus 1 ~v~~iG~~~~D~~~~v~--------------------~~p~~~~~~~~~~~~~~~GG~~~Nva~~l~~-l--g~~~~~~~ 57 (279)
T cd01942 1 DVAVVGHLNYDIILKVE--------------------SFPGPFESVLVKDLRREFGGSAGNTAVALAK-L--GLSPGLVA 57 (279)
T ss_pred CEEEEecceeeeEeecc--------------------cCCCCCceEecceeeecCCcHHHHHHHHHHH-c--CCCceEEE
Confidence 58999999999999887 6787777788889999999999999999998 4 59999999
Q ss_pred eecCCchhHHHHHHHHhcCCceeEe-ecCCCCcceEEEEEe-CCeeceeecccccccCCcccCCCchhHhhhhcceEEEE
Q 019402 86 CIGKDKFGEEMKKNSTAAGVNVKYY-EDESAPTGTCAVCVV-GGERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYI 163 (341)
Q Consensus 86 ~vG~D~~g~~i~~~l~~~gi~~~~~-~~~~~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i 163 (341)
.+|+|.+|+.+++.|+++||+++++ ...+.+|+.+++..+ +|+|++...+++...+++++ . ...+++++++|+
T Consensus 58 ~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~ 132 (279)
T cd01942 58 AVGEDFHGRLYLEELREEGVDTSHVRVVDEDSTGVAFILTDGDDNQIAYFYPGAMDELEPND-E----ADPDGLADIVHL 132 (279)
T ss_pred EecCCcchHHHHHHHHHcCCCccceEEcCCCCcceEEEEEcCCCCEEEEecCCcccccccCC-c----hhhhcccCEEEe
Confidence 9999999999999999999999998 456677999888887 56776665666666666554 2 256789999999
Q ss_pred eccccccCHHHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCCCCcEEEcCHHHHHHHHhhcCCCCCCHHHHHHH
Q 019402 164 AGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGWETDNVEEIALK 243 (341)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~ 243 (341)
++.. .+.++++.+++.|.++++|+.... ...+.+.+.++++++|++++|++|+..+....+. .+..
T Consensus 133 ~~~~------~~~~~~~~~~~~g~~v~~D~~~~~-~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~--~~~~----- 198 (279)
T cd01942 133 SSGP------GLIELARELAAGGITVSFDPGQEL-PRLSGEELEEILERADILFVNDYEAELLKERTGL--SEAE----- 198 (279)
T ss_pred CCch------HHHHHHHHHHHcCCeEEEcchhhh-hhccHHHHHHHHhhCCEEecCHHHHHHHHhhcCC--ChHH-----
Confidence 8752 467788888888999999997532 1223355778899999999999999654332221 1111
Q ss_pred HhcCCCCCCCCccEEEEeeCCCCEEEEeCCeEEEEecccCCCCcccCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 019402 244 ISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAA 323 (341)
Q Consensus 244 l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~v~~~~~~~~~vvdttGAGDaf~a~~~~~l~~g~~~~~a~~~A~~~a 323 (341)
...+++.||+|+|++|++++.+++.+++|++ ++++++|||||||+|+|||+++|++|+++++|+++|+++|
T Consensus 199 -------~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~--~~~~vvDttGAGDaf~a~~i~~l~~g~~l~~al~~a~~~A 269 (279)
T cd01942 199 -------LASGVRVVVVTLGPKGAIVFEDGEEVEVPAV--PAVKVVDTTGAGDAFRAGFLYGLLRGYDLEESLRLGNLAA 269 (279)
T ss_pred -------HhcCCCEEEEEECCCceEEEECCceEEccCc--CcCCCcCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 1136789999999999999998888888865 1348999999999999999999999999999999999999
Q ss_pred hhhhhhcccc
Q 019402 324 NVVIQRSGCT 333 (341)
Q Consensus 324 a~~v~~~g~~ 333 (341)
+.++++.|++
T Consensus 270 a~~~~~~G~~ 279 (279)
T cd01942 270 SLKVERRGAQ 279 (279)
T ss_pred HHHHcccCCC
Confidence 9999999873
No 19
>COG0524 RbsK Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-42 Score=314.27 Aligned_cols=295 Identities=30% Similarity=0.402 Sum_probs=244.5
Q ss_pred eEEEecCceeeeEeecCHHHHHHcCCCCCceEEecCcccchHHHHhccCCceeecCchhHHHHHHHHHHhCCCCceEEEE
Q 019402 6 ILLGMGNPLLDISAVVDEEFLKKYDIKLNNAILAEDKHLPMYDELASKENVEYIAGGATQNSIKVAQWMLQIPGATSYIG 85 (341)
Q Consensus 6 ~i~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~~lg~~v~li~ 85 (341)
+|+++|++++|++....+ .+|..++..........+||++.|+|+++++ + |.++.++|
T Consensus 1 ~v~~iG~~~vD~~~~~~~-------------------~~~~~~~~~~~~~~~~~~GG~~~N~A~~~a~-l--G~~~~~~~ 58 (311)
T COG0524 1 DVVVIGEANVDLIAQVVD-------------------RLPEPGETVLGDFFKVAGGGKGANVAVALAR-L--GAKVALIG 58 (311)
T ss_pred CEEEECchhhheehhhcc-------------------CCCCCcccccccceeecCCchHHHHHHHHHH-c--CCceEEEE
Confidence 489999999999997432 5677776666667889999999999999998 4 49999999
Q ss_pred eecCCchhHHHHHHHHhcCCceeEee-cCCCCcceEEEEEe-CCeeceeeccc-ccccCCcccCCCchhHhhhhcceEEE
Q 019402 86 CIGKDKFGEEMKKNSTAAGVNVKYYE-DESAPTGTCAVCVV-GGERSLVANLS-AANCYKSEHLKRPEIWSIVEKAKYYY 162 (341)
Q Consensus 86 ~vG~D~~g~~i~~~l~~~gi~~~~~~-~~~~~t~~~~~~~~-~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~ 162 (341)
.+|+|.+|+.+++.|++.||+++++. ....+|+.+++.++ +|+|.+..+.+ +...++++.+.. ..+...+++|
T Consensus 59 ~vG~D~~g~~~~~~l~~~GVd~~~~~~~~~~~tg~~~i~~~~~g~r~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~ 134 (311)
T COG0524 59 AVGDDDFGEFLLEELRKEGVDTSHVVTDEGATTGLALILVDEDGERTFVFYRGAAALLLTPEDLDE----DELAGADVLH 134 (311)
T ss_pred EecCcHHHHHHHHHHHHcCCccceEEEcCCCcceEEEEEEcCCCceeEEEECCcccccCChHHcCh----HHHhhcCeee
Confidence 99999999999999999999999985 45558899988887 68999988776 455577766663 5678999999
Q ss_pred EeccccccCHHHHHHHHHHHHhcCCeEEEeCC--cHHHHhhhhHHHHhhCCCCcEEEcCHHHHHHHHhhcCCCCCCHHHH
Q 019402 163 IAGFFLTVSPESIQMVAEHAAAKNKVFMMNLS--APFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGWETDNVEEI 240 (341)
Q Consensus 163 i~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~--~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~ 240 (341)
++++.+..+++.+..+++.+++.+.++.+|+. ...|. .+.+.++++++|++++|++|++.+++. ..+..+.
T Consensus 135 ~~~~~l~~~~~~~~~~~~~a~~~g~~v~~d~~~~~~~~~---~~~~~~~l~~~d~~~~n~~E~~~l~g~----~~~~~~~ 207 (311)
T COG0524 135 ISGIQLEIPPEALLAALELAKAAGVTVSFDLNPRPALWD---RELLEELLALADILFPNEEEAELLTGL----EEDAEAA 207 (311)
T ss_pred EEEeecCCChHHHHHHHHHHHHcCCeEEEecCCCccccc---hhhHHHHHhhCCEEeCCHHHHHHHhCC----CccHHHH
Confidence 99998877779999999999999998666654 33322 466888999999999999999999863 2345555
Q ss_pred HHHHhcCCCCCCCCccEEEEeeCCCCEEEEeCCeEEEEecccCCCCcccCCCCcchhhHHHHHHHHhcCCCHHHHHHHHH
Q 019402 241 ALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGC 320 (341)
Q Consensus 241 ~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~v~~~~~~~~~vvdttGAGDaf~a~~~~~l~~g~~~~~a~~~A~ 320 (341)
...+ +..+++.+|+|+|++|+++++.+...+++.++.+++++||||||||+|.|||++++++|+++++|+++|+
T Consensus 208 ~~~~------~~~~~~~vvvt~G~~Ga~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~agfl~~~~~g~~~~~a~~~a~ 281 (311)
T COG0524 208 AALL------LAKGVKTVVVTLGAEGAVVFTGGGEVTVPVPAAFKVKVVDTTGAGDAFAAGFLAGLLEGKSLEEALRFAN 281 (311)
T ss_pred HHHH------hhcCCCEEEEEeCCCcEEEEeCCCceeeccCCCCccccccCCCchHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5555 5678999999999999999987543555544455669999999999999999999999999999999999
Q ss_pred HHHhhhhhhcccc--CCCCCC
Q 019402 321 YAANVVIQRSGCT--YPPKPE 339 (341)
Q Consensus 321 ~~aa~~v~~~g~~--~p~~~e 339 (341)
++|++++++.|+. +|..+|
T Consensus 282 a~aa~~~~~~g~~~~~p~~~~ 302 (311)
T COG0524 282 AAAALAVTRPGARPSLPTREE 302 (311)
T ss_pred HHhhhhhccCCCCCCCCCHHH
Confidence 9999999999995 555554
No 20
>PRK09434 aminoimidazole riboside kinase; Provisional
Probab=100.00 E-value=4.4e-42 Score=309.76 Aligned_cols=285 Identities=24% Similarity=0.326 Sum_probs=227.3
Q ss_pred CcceEEEecCceeeeEeecCHHHHHHcCCCCCceEEecCcccchHHHHhccCCceeecCchhHHHHHHHHHHhCCCCceE
Q 019402 3 YEGILLGMGNPLLDISAVVDEEFLKKYDIKLNNAILAEDKHLPMYDELASKENVEYIAGGATQNSIKVAQWMLQIPGATS 82 (341)
Q Consensus 3 ~~~~i~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~~lg~~v~ 82 (341)
||++|+++|++++|++...+ ......+||++.|+|.++++ | |.++.
T Consensus 1 ~~~~il~iG~~~iD~~~~~~-------------------------------~~~~~~~GG~~~N~a~~l~~-L--G~~~~ 46 (304)
T PRK09434 1 MMNKVWVLGDAVVDLIPEGE-------------------------------NRYLKCPGGAPANVAVGIAR-L--GGESG 46 (304)
T ss_pred CCCcEEEecchheeeecCCC-------------------------------CceeeCCCChHHHHHHHHHH-c--CCCce
Confidence 34599999999999984211 23456899999999999998 4 59999
Q ss_pred EEEeecCCchhHHHHHHHHhcCCceeEee-cCCCCcceEEEEEe-CCeeceeec--ccccccCCcccCCCchhHhhhhcc
Q 019402 83 YIGCIGKDKFGEEMKKNSTAAGVNVKYYE-DESAPTGTCAVCVV-GGERSLVAN--LSAANCYKSEHLKRPEIWSIVEKA 158 (341)
Q Consensus 83 li~~vG~D~~g~~i~~~l~~~gi~~~~~~-~~~~~t~~~~~~~~-~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 158 (341)
++|.+|+|.+|+++++.|+++||++.++. .++.+|+.+++..+ +|+|++... .++...++.++++ .+.+.
T Consensus 47 ~v~~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~~~t~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~~------~~~~~ 120 (304)
T PRK09434 47 FIGRVGDDPFGRFMQQTLQDEGVDTTYLRLDPAHRTSTVVVDLDDQGERSFTFMVRPSADLFLQPQDLP------PFRQG 120 (304)
T ss_pred EEEEecCchHHHHHHHHHHHcCCCCcceEEcCCCCceEEEEEECCCCCEeEEEecCCchhhhCCHHHhh------hhcCC
Confidence 99999999999999999999999999884 56677888888886 488876433 2222233333332 36789
Q ss_pred eEEEEeccccccC--HHHHHHHHHHHHhcCCeEEEeCCcH--HHH--hhhhHHHHhhCCCCcEEEcCHHHHHHHHhhcCC
Q 019402 159 KYYYIAGFFLTVS--PESIQMVAEHAAAKNKVFMMNLSAP--FIC--EFFREPQEKALPYMDYVFGNETEARTFAKVHGW 232 (341)
Q Consensus 159 ~~v~i~~~~~~~~--~~~~~~~~~~~~~~~~~v~~d~~~~--~~~--~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~ 232 (341)
+++|+++.....+ .+...++++.+++++.++.+|+... .|. ...++.+.++++++|++++|++|+..+++
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~e~~~l~g---- 196 (304)
T PRK09434 121 EWLHLCSIALSAEPSRSTTFEAMRRIKAAGGFVSFDPNLREDLWQDEAELRECLRQALALADVVKLSEEELCFLSG---- 196 (304)
T ss_pred CEEEEccccccCchHHHHHHHHHHHHHHcCCEEEECCCCChhhccCHHHHHHHHHHHHHhcceeeCCHHHHHHHhC----
Confidence 9999988654323 3566788999999999999998632 221 12345577889999999999999999876
Q ss_pred CCCCHHHHHHHHhcCCCCCCCCccEEEEeeCCCCEEEEeCCeEEEEecccCCCCcccCCCCcchhhHHHHHHHHhcCC--
Q 019402 233 ETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEK-- 310 (341)
Q Consensus 233 ~~~~~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~v~~~~~~~~~vvdttGAGDaf~a~~~~~l~~g~-- 310 (341)
.++.+++++.+.+ ..+++.+|||+|++|++++++++.+++|++++ +++|||||||+|+|||+++|++|+
T Consensus 197 -~~~~~~~~~~l~~-----~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~---~~vDttGAGD~f~ag~~~~l~~g~~~ 267 (304)
T PRK09434 197 -TSQLEDAIYALAD-----RYPIALLLVTLGAEGVLVHTRGQVQHFPAPSV---DPVDTTGAGDAFVAGLLAGLSQAGLW 267 (304)
T ss_pred -CCCHHHHHHHHHh-----hcCCcEEEEEecCCceEEEeCCceeEeCCCCC---CCCcCCCchHHHHHHHHHHHHcCCCc
Confidence 3467788888832 14678999999999999998888888887655 889999999999999999999997
Q ss_pred ----CHHHHHHHHHHHHhhhhhhccc--cCCCCCCC
Q 019402 311 ----PVEDCVRTGCYAANVVIQRSGC--TYPPKPEF 340 (341)
Q Consensus 311 ----~~~~a~~~A~~~aa~~v~~~g~--~~p~~~e~ 340 (341)
++++|+++|+++|+.++++.|+ .+|+.+++
T Consensus 268 ~~~~~~~~a~~~a~~~Aa~~v~~~g~~~~~~~~~~~ 303 (304)
T PRK09434 268 TDEAELAEIIAQAQACGALATTAKGAMTALPNRQEL 303 (304)
T ss_pred cchHHHHHHHHHHHHHHHHHHcccCCcCCCCChHHc
Confidence 8999999999999999999996 57777665
No 21
>PF00294 PfkB: pfkB family carbohydrate kinase; InterPro: IPR011611 This entry includes a variety of carbohydrate and pyrimidine kinases. The family includes phosphomethylpyrimidine kinase (2.7.4.7 from EC). This enzyme is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 1VM7_B 2ABQ_B 3GO7_B 3GO6_B 3FHY_A 4EOH_B 2YXU_A 2F7K_A 3KEU_A 2YXT_B ....
Probab=100.00 E-value=3.8e-43 Score=316.28 Aligned_cols=291 Identities=26% Similarity=0.386 Sum_probs=235.5
Q ss_pred cceEEEecCceeeeEeecCHHHHHHcCCCCCceEEecCcccchHHHHhccCCceeecCchhHHHHHHHHHHhCCCCceEE
Q 019402 4 EGILLGMGNPLLDISAVVDEEFLKKYDIKLNNAILAEDKHLPMYDELASKENVEYIAGGATQNSIKVAQWMLQIPGATSY 83 (341)
Q Consensus 4 ~~~i~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~~lg~~v~l 83 (341)
|.+|+++|++++|++...+ ++ .+...+..+....+||.+.|+|.+|++ + |.++.+
T Consensus 1 m~~v~~iG~~~iD~~~~~~--------------------~~--~~~~~~~~~~~~~~GG~~~n~a~~l~~-L--G~~v~~ 55 (301)
T PF00294_consen 1 MKKVLVIGEVNIDIIGYVD--------------------RF--KGDLVRVSSVKRSPGGAGANVAIALAR-L--GADVAL 55 (301)
T ss_dssp EEEEEEESEEEEEEEEESS--------------------SH--TTSEEEESEEEEEEESHHHHHHHHHHH-T--TSEEEE
T ss_pred CCcEEEECccceEEEeecC--------------------Cc--CCcceecceEEEecCcHHHHHHHHHHh-c--cCcceE
Confidence 4589999999999999887 22 333346788899999999999999998 4 499999
Q ss_pred EEeecCCchhHHHHHHHHhcCCceeEee-cCCCCcceEEEEEe-CCeeceeecccccccCCcccCCCchhHhhhhcceEE
Q 019402 84 IGCIGKDKFGEEMKKNSTAAGVNVKYYE-DESAPTGTCAVCVV-GGERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYY 161 (341)
Q Consensus 84 i~~vG~D~~g~~i~~~l~~~gi~~~~~~-~~~~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 161 (341)
+|.+|+|.+|+.+++.|++.||+++++. ..+.+|+.+++..+ +|+|++..+.+....++.+.+ .+..+.+++++
T Consensus 56 i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 131 (301)
T PF00294_consen 56 IGKVGDDFFGEIILEELKERGVDTSYIPRDGDEPTGRCLIIVDPDGERTFVFSPGANSDLTPDEL----DEEAIDEADIL 131 (301)
T ss_dssp EEEEESSHHHHHHHHHHHHTTEEETTEEEESSSEEEEEEEEEETTSEEEEEEEEGGGGGGGHHHH----HHHHHHTESEE
T ss_pred EeeccCcchhhhhhhccccccccccccccccccccceeEeeecccccceeeeccccccccccccc----cccccccccce
Confidence 9999999999999999999999999985 56678999999988 689998888777777776655 34788999999
Q ss_pred EEec-ccc-ccCHHHHHHHHHHHHhcCC--eEEEeCCcHHHHhhhhHHHHhhCCCCcEEEcCHHHHHHHHhhcCCCCCCH
Q 019402 162 YIAG-FFL-TVSPESIQMVAEHAAAKNK--VFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGWETDNV 237 (341)
Q Consensus 162 ~i~~-~~~-~~~~~~~~~~~~~~~~~~~--~v~~d~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~ 237 (341)
++++ ... ..+.+.+..+.+.+++.+. ++..++... . .++.+.++++++|++++|++|+..+++... .+.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~l~~~dil~~n~~E~~~l~~~~~---~~~ 204 (301)
T PF00294_consen 132 HLSGVSLPEGIPEDLLEALAKAAKKNGPFDPVFRDPSWD---D-LREDLKELLPYADILKPNEEEAEALTGSKI---DDP 204 (301)
T ss_dssp EEESGHCSTTSHHHHHHHHHHHHHHTTEEEEEEEGGGSH---H-HHHHHHHHHHTSSEEEEEHHHHHHHHTCST---SSH
T ss_pred eecccccccccccceeeeccccccccccccccccccccc---c-cchhhhhhccccchhccccccccccccccc---cch
Confidence 9999 333 3344667777777777663 333343322 1 346688888999999999999999988543 244
Q ss_pred HHHHHHHhcCCCCCCCCccEEEEeeCCCCEEEEeCCeEEEEecccCCCCcccCCCCcchhhHHHHHHHHhcCCCHHHHHH
Q 019402 238 EEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVR 317 (341)
Q Consensus 238 ~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~v~~~~~~~~~vvdttGAGDaf~a~~~~~l~~g~~~~~a~~ 317 (341)
+++.+.+.++ +..+++.+++|+|++|++++++++.+++++++ +++++|||||||+|+|||++++++|+++++|++
T Consensus 205 ~~~~~~~~~l---~~~g~~~vivt~G~~G~~~~~~~~~~~~~~~~--~~~vvdttGAGD~f~A~~i~~l~~~~~~~~a~~ 279 (301)
T PF00294_consen 205 EDALAALREL---QARGVKIVIVTLGEDGALYYTNDESYHVPPVP--PVNVVDTTGAGDAFAAGFIYGLLSGMSLEEALK 279 (301)
T ss_dssp HHHHHHHHHH---HHTTSSEEEEEEGGGEEEEEETTEEEEEEEES--SSSSSSCTTHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred hhhhcccccc---chhhhhhhhccccccCcccccccccccccccc--cccccceeccchhhhHHHHHHHHcCCCHHHHHH
Confidence 5444444221 34678999999999999999999999998752 448999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhccccCC
Q 019402 318 TGCYAANVVIQRSGCTYP 335 (341)
Q Consensus 318 ~A~~~aa~~v~~~g~~~p 335 (341)
+|+++|+.+|++.|+..|
T Consensus 280 ~a~~~aa~~v~~~g~~~~ 297 (301)
T PF00294_consen 280 FANAAAALKVQQPGPRSP 297 (301)
T ss_dssp HHHHHHHHHHTSSSSSGG
T ss_pred HHHHHHHHHhCCCCCcCC
Confidence 999999999999999644
No 22
>cd01166 KdgK 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.
Probab=100.00 E-value=5.2e-42 Score=307.92 Aligned_cols=283 Identities=27% Similarity=0.359 Sum_probs=227.2
Q ss_pred eEEEecCceeeeEeecCHHHHHHcCCCCCceEEecCcccchHHHHhccCCceeecCchhHHHHHHHHHHhCCCCceEEEE
Q 019402 6 ILLGMGNPLLDISAVVDEEFLKKYDIKLNNAILAEDKHLPMYDELASKENVEYIAGGATQNSIKVAQWMLQIPGATSYIG 85 (341)
Q Consensus 6 ~i~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~~lg~~v~li~ 85 (341)
+|+|+|++++|++...+. +.....+....+||++.|+|.+|++ + |.++.++|
T Consensus 1 ~i~~iG~~~iD~~~~~~~-------------------------~~~~~~~~~~~~GG~~~N~a~~la~-l--g~~~~~i~ 52 (294)
T cd01166 1 DVVTIGEVMVDLSPPGGG-------------------------RLEQADSFRKFFGGAEANVAVGLAR-L--GHRVALVT 52 (294)
T ss_pred CeEEechhheeeecCCCC-------------------------ccchhhccccccCChHHHHHHHHHh-c--CCceEEEE
Confidence 589999999999975541 2244567788999999999999998 4 59999999
Q ss_pred eecCCchhHHHHHHHHhcCCceeEe-ecCCCCcceEEEEEe-CCeeceeecc--cccccCCcccCCCchhHhhhhcceEE
Q 019402 86 CIGKDKFGEEMKKNSTAAGVNVKYY-EDESAPTGTCAVCVV-GGERSLVANL--SAANCYKSEHLKRPEIWSIVEKAKYY 161 (341)
Q Consensus 86 ~vG~D~~g~~i~~~l~~~gi~~~~~-~~~~~~t~~~~~~~~-~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v 161 (341)
.+|+|.+|+.+.+.|++.||+++++ +..+.+|+.+++.++ +|+|++..+. ++...++.+.+. ...++++|++
T Consensus 53 ~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v 128 (294)
T cd01166 53 AVGDDPFGRFILAELRREGVDTSHVRVDPGRPTGLYFLEIGAGGERRVLYYRAGSAASRLTPEDLD----EAALAGADHL 128 (294)
T ss_pred ecCCCHHHHHHHHHHHHcCCCCceEEEeCCCcceEEEEEecCCCCceEEEeCCCChhHhCChhhCC----HHHHhCCCEE
Confidence 9999999999999999999999998 466778899988886 4788776553 233455555554 3567899999
Q ss_pred EEeccccccCH---HHHHHHHHHHHhcCCeEEEeCCcHHH---HhhhhHHHHhhCCCCcEEEcCHHHHHHHHhhcCCCCC
Q 019402 162 YIAGFFLTVSP---ESIQMVAEHAAAKNKVFMMNLSAPFI---CEFFREPQEKALPYMDYVFGNETEARTFAKVHGWETD 235 (341)
Q Consensus 162 ~i~~~~~~~~~---~~~~~~~~~~~~~~~~v~~d~~~~~~---~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~ 235 (341)
|++++.+...+ +.+.++++.+++.+.++++|+..... .....+.+.++++++|++++|++|++.+++..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~~~~~~~~~~~~~~~~~~~~~dil~~n~~E~~~l~~~~----- 203 (294)
T cd01166 129 HLSGITLALSESAREALLEALEAAKARGVTVSFDLNYRPKLWSAEEAREALEELLPYVDIVLPSEEEAEALLGDE----- 203 (294)
T ss_pred EEcCcchhhCHHHHHHHHHHHHHHHHcCCEEEECCCCcchhcChHHHHHHHHHHHHhCCEEEcCHHHHHHHhCCC-----
Confidence 99987653333 77888999999999999999974321 11133456788999999999999999998632
Q ss_pred CHHHHHHHHhcCCCCCCCCccEEEEeeCCCCEEEEeCCeEEEEecccCCCCcccCCCCcchhhHHHHHHHHhcCCCHHHH
Q 019402 236 NVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDC 315 (341)
Q Consensus 236 ~~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~v~~~~~~~~~vvdttGAGDaf~a~~~~~l~~g~~~~~a 315 (341)
...++.+.+.++ ..+++.++||+|++|++++.+++.+++|++++ +++||+||||+|+|||+++|++|+++++|
T Consensus 204 ~~~~~~~~~~~l----~~g~~~viit~G~~G~~~~~~~~~~~~~~~~~---~~vdt~GAGD~f~a~~~~~l~~g~~~~~a 276 (294)
T cd01166 204 DPTDAAERALAL----ALGVKAVVVKLGAEGALVYTGGGRVFVPAYPV---EVVDTTGAGDAFAAGFLAGLLEGWDLEEA 276 (294)
T ss_pred CchhHHHHHHhh----cCCccEEEEEEcCCceEEEECCceEEeCCCCc---ccccCCCchHHHHHHHHHHHHcCCCHHHH
Confidence 122333333211 25788999999999999998888888887655 78999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhccc
Q 019402 316 VRTGCYAANVVIQRSGC 332 (341)
Q Consensus 316 ~~~A~~~aa~~v~~~g~ 332 (341)
+++|+++|+.+|++.|+
T Consensus 277 ~~~a~~~aa~~i~~~G~ 293 (294)
T cd01166 277 LRFANAAAALVVTRPGD 293 (294)
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 99999999999999986
No 23
>PRK09954 putative kinase; Provisional
Probab=100.00 E-value=3.3e-42 Score=317.34 Aligned_cols=289 Identities=15% Similarity=0.162 Sum_probs=223.3
Q ss_pred ceEEEecCceeeeEeecCHHHHHHcCCCCCceEEecCcccchHHHHhccCCceeecCchhHHHHHHHHHHhCCCCceEEE
Q 019402 5 GILLGMGNPLLDISAVVDEEFLKKYDIKLNNAILAEDKHLPMYDELASKENVEYIAGGATQNSIKVAQWMLQIPGATSYI 84 (341)
Q Consensus 5 ~~i~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~~lg~~v~li 84 (341)
..|+|+|.+++|++..++. ++|..++ ........+||++.|+|.++++ +|.++.++
T Consensus 58 ~~v~viG~~~vD~~~~~~~-------------------~~p~~~~--~~~~~~~~~GG~~~NvA~~lar---LG~~v~~i 113 (362)
T PRK09954 58 EYCVVVGAINMDIRGMADI-------------------RYPQAAS--HPGTIHCSAGGVGRNIAHNLAL---LGRDVHLL 113 (362)
T ss_pred ccEEEEEEEEEEEEEeeCC-------------------cCcCCCC--CCceEEEecCcHHHHHHHHHHH---cCCCeEEE
Confidence 4789999999999987752 3455443 4456788899999999999998 45999999
Q ss_pred EeecCCchhHHHHHHHHhcCCceeEee-cCCCCcceEEEEEeCCeeceeeccc--ccccCCcccCCCchhHhhhhcceEE
Q 019402 85 GCIGKDKFGEEMKKNSTAAGVNVKYYE-DESAPTGTCAVCVVGGERSLVANLS--AANCYKSEHLKRPEIWSIVEKAKYY 161 (341)
Q Consensus 85 ~~vG~D~~g~~i~~~l~~~gi~~~~~~-~~~~~t~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v 161 (341)
|.+|+|.+|+++++.|++.||+++++. .++.+|+.++++.++++++++...+ ....++++.+.. ..+.+..++++
T Consensus 114 g~VG~D~~G~~i~~~l~~~GVd~~~~~~~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v 191 (362)
T PRK09954 114 SAIGDDFYGETLLEETRRAGVNVSGCIRLHGQSTSTYLAIANRQDETVLAINDTHILQQLTPQLLNG--SRDLIRHAGVV 191 (362)
T ss_pred EEECCCHHHHHHHHHHHHcCCCccceEEcCCCCCeEEEEEEcCCCCEEEEEcCchhhhcCCHHHHHH--HHHHHhcCCEE
Confidence 999999999999999999999999874 5666788777776655555544332 223455443332 23456788999
Q ss_pred EEeccccccCHHHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCCCCcEEEcCHHHHHHHHhhcCCCCCCHHHHH
Q 019402 162 YIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGWETDNVEEIA 241 (341)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~ 241 (341)
++++ +.+++.+..+++.+ +++++++|+.+..+ .+.+.++++++|++++|++|++.+++....+.++.++++
T Consensus 192 ~~~~---~~~~~~~~~~~~~a--~~~~v~~D~~~~~~----~~~~~~~l~~~dil~~n~~Ea~~l~g~~~~~~~~~~~~~ 262 (362)
T PRK09954 192 LADC---NLTAEALEWVFTLA--DEIPVFVDTVSEFK----AGKIKHWLAHIHTLKPTQPELEILWGQAITSDADRNAAV 262 (362)
T ss_pred EEEC---CCCHHHHHHHHHhC--CCCcEEEECCCHHH----hhhhhhhhccccEEecCHHHHHHHcCCCCCCHHHHHHHH
Confidence 8876 45666666676654 47889999875431 123667899999999999999999874332233455777
Q ss_pred HHHhcCCCCCCCCccEEEEeeCCCCEEEEeCC-eEEEEecccCCCCcccCCCCcchhhHHHHHHHHhcCCCHHHHHHHHH
Q 019402 242 LKISQWPKASGTHKRITVITQGADPVVVAEDG-KVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGC 320 (341)
Q Consensus 242 ~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~-~~~~v~~~~~~~~~vvdttGAGDaf~a~~~~~l~~g~~~~~a~~~A~ 320 (341)
+.+ ...|++.||||+|++|++++..+ ..+++|++++ +++|||||||+|+|||++++++|+++++|+++|+
T Consensus 263 ~~l------~~~g~~~Vvvt~G~~G~~~~~~~~~~~~~~~~~v---~vvDttGAGDaF~Ag~l~~l~~g~~~~eal~~a~ 333 (362)
T PRK09954 263 NAL------HQQGVQQIFVYLPDESVFCSEKDGEQFLLTAPAH---TTVDSFGADDGFMAGLVYSFLEGYSFRDSARFAM 333 (362)
T ss_pred HHH------HHcCCCEEEEEeCCccEEEEeCCCceEeccCCCc---ccccccchHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 777 56688999999999999988644 4566676654 8999999999999999999999999999999999
Q ss_pred HHHhhhhhhccccCCCC
Q 019402 321 YAANVVIQRSGCTYPPK 337 (341)
Q Consensus 321 ~~aa~~v~~~g~~~p~~ 337 (341)
++|++++.+.....|++
T Consensus 334 a~Aal~~~s~~~~~~~~ 350 (362)
T PRK09954 334 ACAAISRASGSLNNPTL 350 (362)
T ss_pred HHHHHHhcCCCcCCCcC
Confidence 99999988776665654
No 24
>cd01167 bac_FRK Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate. This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.
Probab=100.00 E-value=9.1e-42 Score=306.51 Aligned_cols=278 Identities=25% Similarity=0.327 Sum_probs=227.8
Q ss_pred eEEEecCceeeeEeecCHHHHHHcCCCCCceEEecCcccchHHHHhccCCceeecCchhHHHHHHHHHHhCCCCceEEEE
Q 019402 6 ILLGMGNPLLDISAVVDEEFLKKYDIKLNNAILAEDKHLPMYDELASKENVEYIAGGATQNSIKVAQWMLQIPGATSYIG 85 (341)
Q Consensus 6 ~i~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~~lg~~v~li~ 85 (341)
||+++|++++|++...+ +. ..+....+||+++|+|.++++ + |.++.++|
T Consensus 1 ~ilviG~~~~D~~~~~~--------------------~~--------~~~~~~~~GG~~~n~a~~l~~-l--g~~v~~i~ 49 (295)
T cd01167 1 KVVCFGEALIDFIPEGS--------------------GA--------PETFTKAPGGAPANVAVALAR-L--GGKAAFIG 49 (295)
T ss_pred CEEEEcceeEEEecCCC--------------------CC--------CccccccCCCcHHHHHHHHHh-c--CCCeEEEE
Confidence 69999999999998665 11 466788999999999999998 4 49999999
Q ss_pred eecCCchhHHHHHHHHhcCCceeEee-cCCCCcceEEEEEe-CCeeceeecccccccCCccc-CCCchhHhhhhcceEEE
Q 019402 86 CIGKDKFGEEMKKNSTAAGVNVKYYE-DESAPTGTCAVCVV-GGERSLVANLSAANCYKSEH-LKRPEIWSIVEKAKYYY 162 (341)
Q Consensus 86 ~vG~D~~g~~i~~~l~~~gi~~~~~~-~~~~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~ 162 (341)
.+|+|.+|+.+++.|++.||++.++. ..+.+|+.+++.++ +|+|++....++......+. +. .+.++++++++
T Consensus 50 ~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~ 125 (295)
T cd01167 50 KVGDDEFGDFLLETLKEAGVDTRGIQFDPAAPTTLAFVTLDADGERSFEFYRGPAADLLLDTELN----PDLLSEADILH 125 (295)
T ss_pred eecCcHHHHHHHHHHHHcCCCchheeecCCCCceEEEEEECCCCCEeEEeecCCcHhhhcCccCC----hhHhccCCEEE
Confidence 99999999999999999999999885 66778999998887 68888776555433322221 22 25688999999
Q ss_pred Eeccccc--cCHHHHHHHHHHHHhcCCeEEEeCCcH--HHHh--hhhHHHHhhCCCCcEEEcCHHHHHHHHhhcCCCCCC
Q 019402 163 IAGFFLT--VSPESIQMVAEHAAAKNKVFMMNLSAP--FICE--FFREPQEKALPYMDYVFGNETEARTFAKVHGWETDN 236 (341)
Q Consensus 163 i~~~~~~--~~~~~~~~~~~~~~~~~~~v~~d~~~~--~~~~--~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~ 236 (341)
++++... ...+.+.++++.+++.+.++++|+... .|.. ...+.+.++++++|++++|++|+..+++ ...
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~d~l~~n~~E~~~l~~-----~~~ 200 (295)
T cd01167 126 FGSIALASEPSRSALLELLEAAKKAGVLISFDPNLRPPLWRDEEEARERIAELLELADIVKLSDEELELLFG-----EED 200 (295)
T ss_pred EechhhccchHHHHHHHHHHHHHHcCCEEEEcCCCChhhcCCHHHHHHHHHHHHHhCCEEEecHHHHHHHhC-----CCC
Confidence 9876321 123678889999999999999998632 2211 1345577899999999999999999876 234
Q ss_pred HHHHHHHHhcCCCCCCCCccEEEEeeCCCCEEEEeCCeEEEEecccCCCCcccCCCCcchhhHHHHHHHHhcCC------
Q 019402 237 VEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEK------ 310 (341)
Q Consensus 237 ~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~v~~~~~~~~~vvdttGAGDaf~a~~~~~l~~g~------ 310 (341)
..++++.+ ...+++.+|||+|++|++++++++.+++|++++ +++|||||||+|+|||+++|++|+
T Consensus 201 ~~~~~~~l------~~~g~~~vvvt~G~~G~~~~~~~~~~~~~a~~~---~vvDttGAGD~f~a~~~~~l~~g~~~~~~~ 271 (295)
T cd01167 201 PEEIAALL------LLFGLKLVLVTRGADGALLYTKGGVGEVPGIPV---EVVDTTGAGDAFVAGLLAQLLSRGLLALDE 271 (295)
T ss_pred HHHHHHHH------hhcCCCEEEEecCCcceEEEECCcceeeCCCCc---ceeeCCCccHHHHHHHHHHHHhCCcccccH
Confidence 55666777 567889999999999999999888888887764 899999999999999999999999
Q ss_pred -CHHHHHHHHHHHHhhhhhhccc
Q 019402 311 -PVEDCVRTGCYAANVVIQRSGC 332 (341)
Q Consensus 311 -~~~~a~~~A~~~aa~~v~~~g~ 332 (341)
++++|+++|+++|+.+|+++|+
T Consensus 272 ~~~~~a~~~a~~~aa~~~~~~G~ 294 (295)
T cd01167 272 DELAEALRFANAVGALTCTKAGA 294 (295)
T ss_pred HHHHHHHHHHHHhhHHHhcccCC
Confidence 9999999999999999999986
No 25
>cd01947 Guanosine_kinase_like Guanosine kinase-like sugar kinases. Found in bacteria and archaea, the guanosine kinase-like group is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=1.2e-41 Score=300.96 Aligned_cols=263 Identities=19% Similarity=0.309 Sum_probs=215.6
Q ss_pred eEEEecCceeeeEeecCHHHHHHcCCCCCceEEecCcccchHHHHhccCCceeecCchhHHHHHHHHHHhCCCCceEEEE
Q 019402 6 ILLGMGNPLLDISAVVDEEFLKKYDIKLNNAILAEDKHLPMYDELASKENVEYIAGGATQNSIKVAQWMLQIPGATSYIG 85 (341)
Q Consensus 6 ~i~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~~lg~~v~li~ 85 (341)
+|+++|++++|++..++ +.|.+++..+..+....+||++.|+|.+|++ + |.++.++|
T Consensus 1 ~il~iG~~~iD~~~~~~--------------------~~~~~~~~~~~~~~~~~~GG~~~Nva~~l~~-l--G~~~~~i~ 57 (265)
T cd01947 1 KIAVVGHVEWDIFLSLD--------------------APPQPGGISHSSDSRESPGGGGANVAVQLAK-L--GNDVRFFS 57 (265)
T ss_pred CEEEEeeeeEEEEEEec--------------------CCCCCCceeecccceeecCchHHHHHHHHHH-c--CCceEEEE
Confidence 68999999999999987 5788888888889999999999999999998 4 59999999
Q ss_pred eecCCchhHHHHHHHHhcCCceeEeecCCCCcceEEEEEe-CCeeceeecccccccCCcccCCCchhHhhhhcceEEEEe
Q 019402 86 CIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVV-GGERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYIA 164 (341)
Q Consensus 86 ~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~ 164 (341)
.+|+|.+|+.+++.|++ ++++..++..+..|+.++++++ +|+|+++...... ++.+. ++.+.++|++|++
T Consensus 58 ~vG~D~~g~~i~~~l~~-~~~~~~~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~----~~~~~----~~~~~~~~~~~~~ 128 (265)
T cd01947 58 NLGRDEIGIQSLEELES-GGDKHTVAWRDKPTRKTLSFIDPNGERTITVPGERL----EDDLK----WPILDEGDGVFIT 128 (265)
T ss_pred EecCChHHHHHHHHHHh-cCCcceEEecCCCCceEEEEECCCCcceEEecCCCC----cccCC----HhHhccCCEEEEe
Confidence 99999999999999999 9988887655667999988886 6888775543211 22222 2467899999998
Q ss_pred ccccccCHHHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCCCCcEEEcCHHHHHHHHhhcCCCCCCHHHHHHHH
Q 019402 165 GFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGWETDNVEEIALKI 244 (341)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l 244 (341)
+.. ...++++.+++.+ .+++|+.... ..+.+.++++++|++++|++|+..+.. ++.+
T Consensus 129 ~~~------~~~~~~~~a~~~~-~~~~d~~~~~----~~~~~~~~~~~~d~~~~n~~e~~~l~~------------~~~~ 185 (265)
T cd01947 129 AAA------VDKEAIRKCRETK-LVILQVTPRV----RVDELNQALIPLDILIGSRLDPGELVV------------AEKI 185 (265)
T ss_pred ccc------ccHHHHHHHHHhC-CeEeccCccc----cchhHHHHhhhCCEEEeCHHHHHHhhh------------HHHH
Confidence 753 1245667777765 4566765432 123467889999999999999988752 3344
Q ss_pred hcCCCCCCCCccEEEEeeCCCCEEEEeCCeEEEEecccCCCCcccCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 019402 245 SQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAAN 324 (341)
Q Consensus 245 ~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~v~~~~~~~~~vvdttGAGDaf~a~~~~~l~~g~~~~~a~~~A~~~aa 324 (341)
...+++.+|||+|++|++++++++.++++++++ +++|||||||+|.|||++++++|+++++|+++|+++|+
T Consensus 186 ------~~~~~~~viit~G~~Ga~~~~~~~~~~~~~~~~---~vvDttGAGDaF~ag~l~~l~~g~~~~~al~~a~~~Aa 256 (265)
T cd01947 186 ------AGPFPRYLIVTEGELGAILYPGGRYNHVPAKKA---KVPDSTGAGDSFAAGFIYGLLKGWSIEEALELGAQCGA 256 (265)
T ss_pred ------HhccCCEEEEEeCCCCeEEEECCeeEECCCCCC---CCCCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 455789999999999999999888888887654 89999999999999999999999999999999999999
Q ss_pred hhhhhccc
Q 019402 325 VVIQRSGC 332 (341)
Q Consensus 325 ~~v~~~g~ 332 (341)
.++++.|+
T Consensus 257 ~~v~~~G~ 264 (265)
T cd01947 257 ICVSHFGP 264 (265)
T ss_pred HHHhccCC
Confidence 99999986
No 26
>cd01172 RfaE_like RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose. LPS plays an important role in maintaining the structural integrity of the bacterial outer membrane of gram-negative bacteria. RfaE consists of two domains, a sugar kinase domain, represented here, and a domain belonging to the cytidylyltransferase superfamily.
Probab=100.00 E-value=4.5e-42 Score=309.79 Aligned_cols=292 Identities=20% Similarity=0.229 Sum_probs=225.7
Q ss_pred eEEEecCceeeeEeecCHHHHHHcCCCCCceEEecCcccchH--HHHhccCCceeecCchhHHHHHHHHHHhCCCCceEE
Q 019402 6 ILLGMGNPLLDISAVVDEEFLKKYDIKLNNAILAEDKHLPMY--DELASKENVEYIAGGATQNSIKVAQWMLQIPGATSY 83 (341)
Q Consensus 6 ~i~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~GG~~~n~a~~l~~l~~lg~~v~l 83 (341)
+|+++|+.++|+++.++.. ++|.. ............+|| +.|+|.+|++ | |.++.+
T Consensus 1 ~vl~iG~~~~D~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~GG-~~NvA~~la~-L--G~~~~~ 58 (304)
T cd01172 1 KVLVVGDVILDEYLYGDVE------------------RISPEAPVPVVKVEREEIRLGG-AANVANNLAS-L--GAKVTL 58 (304)
T ss_pred CEEEEcceeEEeeEeeccc------------------cccCCCCcceEEeeeEEecCcH-HHHHHHHHHH-h--CCCeEE
Confidence 5899999999999875410 22111 111223456678999 6999999998 4 499999
Q ss_pred EEeecCCchhHHHHHHHHhcCCceeEeecCCCCcceEEEEEeCCeeceeecccccccCCcccCCC--chhHhhhhcceEE
Q 019402 84 IGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVVGGERSLVANLSAANCYKSEHLKR--PEIWSIVEKAKYY 161 (341)
Q Consensus 84 i~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v 161 (341)
+|.+|+|.+|+.+++.|+++||++++++.++.+|+.+++..+++++.+..+......++.+.... ......++++|++
T Consensus 59 i~~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 138 (304)
T cd01172 59 LGVVGDDEAGDLLRKLLEKEGIDTDGIVDEGRPTTTKTRVIARNQQLLRVDREDDSPLSAEEEQRLIERIAERLPEADVV 138 (304)
T ss_pred EEEEcCCccHHHHHHHHHhCCCCcceEecCCCCceEEEEEecCCcEEEEEecCCCCCCCHHHHHHHHHHHHHhhccCCEE
Confidence 99999999999999999999999998766666788887777655555544333333333322111 1123457899999
Q ss_pred EEecccc-ccCHHHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCCCCcEEEcCHHHHHHHHhhcCCCCCCHHHH
Q 019402 162 YIAGFFL-TVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGWETDNVEEI 240 (341)
Q Consensus 162 ~i~~~~~-~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~ 240 (341)
+++++.. .++++.+..+++.+++.++++++|++...+ ..++++|++++|++|++.+++....+.++.+++
T Consensus 139 ~~s~~~~~~~~~~~~~~~~~~a~~~~~~v~~D~~~~~~---------~~~~~~d~l~~n~~E~~~l~~~~~~~~~~~~~~ 209 (304)
T cd01172 139 ILSDYGKGVLTPRVIEALIAAARELGIPVLVDPKGRDY---------SKYRGATLLTPNEKEAREALGDEINDDDELEAA 209 (304)
T ss_pred EEEcCCCCccCHHHHHHHHHHHHhcCCCEEEeCCCcch---------hhccCCcEeCCCHHHHHHHhCCCCCChHHHHHH
Confidence 9987643 456788999999999999999999976431 467899999999999999987543333455666
Q ss_pred HHHHhcCCCCCCCCccEEEEeeCCCCEEEEe-CCeEEEEecccCCCCcccCCCCcchhhHHHHHHHHhcCCCHHHHHHHH
Q 019402 241 ALKISQWPKASGTHKRITVITQGADPVVVAE-DGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTG 319 (341)
Q Consensus 241 ~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~-~~~~~~v~~~~~~~~~vvdttGAGDaf~a~~~~~l~~g~~~~~a~~~A 319 (341)
++.+. ...+++.+|||+|++|+++++ +++.+++|++++ +++|||||||+|+|||+++|++|+++++|+++|
T Consensus 210 ~~~l~-----~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~---~vvdttGAGDaf~ag~i~~l~~g~~~~~al~~a 281 (304)
T cd01172 210 GEKLL-----ELLNLEALLVTLGEEGMTLFERDGEVQHIPALAK---EVYDVTGAGDTVIATLALALAAGADLEEAAFLA 281 (304)
T ss_pred HHHHH-----HHhCCCeEEEEcCCCccEEEcCCCcEEEecCCCC---CCCCCcCccHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 66662 134789999999999999998 777888887754 899999999999999999999999999999999
Q ss_pred HHHHhhhhhhccccCCC
Q 019402 320 CYAANVVIQRSGCTYPP 336 (341)
Q Consensus 320 ~~~aa~~v~~~g~~~p~ 336 (341)
+++|+.+|++.|+....
T Consensus 282 ~a~Aa~~~~~~g~~~~~ 298 (304)
T cd01172 282 NAAAGVVVGKVGTAPVT 298 (304)
T ss_pred HHHhheeeecCCCCCcC
Confidence 99999999999986443
No 27
>cd01939 Ketohexokinase Ketohexokinase (fructokinase, KHK) catalyzes the phosphorylation of fructose to fructose-1-phosphate (F1P), the first step in the metabolism of dietary fructose. KHK can also phosphorylate several other furanose sugars. It is found in higher eukaryotes where it is believed to function as a dimer and requires K(+) and ATP to be active. In humans, hepatic KHK deficiency causes fructosuria, a benign inborn error of metabolism.
Probab=100.00 E-value=1.5e-41 Score=304.26 Aligned_cols=278 Identities=18% Similarity=0.226 Sum_probs=219.3
Q ss_pred eEEEecCceeeeEeecCHHHHHHcCCCCCceEEecCcccchHHHHhccCCceeecCchhHHHHHHHHHHhCCCCceEEEE
Q 019402 6 ILLGMGNPLLDISAVVDEEFLKKYDIKLNNAILAEDKHLPMYDELASKENVEYIAGGATQNSIKVAQWMLQIPGATSYIG 85 (341)
Q Consensus 6 ~i~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~~lg~~v~li~ 85 (341)
.|+++|++++|++..++ ++|.+++.....+...++||++.|+|.+|++ + |.++.++|
T Consensus 1 ~v~~iG~~~vD~~~~v~--------------------~~p~~~~~~~~~~~~~~~GG~a~NvA~~la~-l--G~~~~~~~ 57 (290)
T cd01939 1 AVLCVGLTVLDFITTVD--------------------KYPFEDSDQRTTNGRWQRGGNASNSCTVLRL-L--GLSCEFLG 57 (290)
T ss_pred CEEEEeeeeeEEEeeec--------------------CCCCCCcceEeeeeeEecCCCHHHHHHHHHH-c--CCceEEEE
Confidence 38999999999999998 5788887777778889999999999999998 4 59999999
Q ss_pred eecCCchhHHHHHHHHhcCCceeEee-cCCCCcceEEEEEe-CCeeceeecccccccCCcccCCCchhHhhhhcceEEEE
Q 019402 86 CIGKDKFGEEMKKNSTAAGVNVKYYE-DESAPTGTCAVCVV-GGERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYI 163 (341)
Q Consensus 86 ~vG~D~~g~~i~~~l~~~gi~~~~~~-~~~~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i 163 (341)
.+|+|++|+.+++.|++.||+++++. ..+..++.++++.+ +|+|+++...++...++.+++.. ..++++|++|+
T Consensus 58 ~vG~D~~g~~~~~~l~~~gId~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 133 (290)
T cd01939 58 VLSRGPVFESLLDDFQSRGIDISHCYRKDIDEPASSYIIRSRAGGRTTIVNDNNLPEVTYDDFSK----IDLTQYGWIHF 133 (290)
T ss_pred eecCCHHHHHHHHHHHHcCCceeeeeEcCCCCCeeEEEEEcCCCCeEEEEeCCCCCCCCHHHHhh----hhhccCCEEEE
Confidence 99999999999999999999999974 44444544555554 68887777666656666665553 34589999999
Q ss_pred eccccccCHHHHHHHHHHHHhcC-------CeEEEeCCcHHHHhhhhHHHHhhCCCCcEEEcCHHHHHHHHhhcCCCCCC
Q 019402 164 AGFFLTVSPESIQMVAEHAAAKN-------KVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGWETDN 236 (341)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~-------~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~ 236 (341)
++.. ++...++++.+++.+ +++++|+.... +.+.++++++|++++|++|++.+ + ..+
T Consensus 134 ~g~~----~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~------~~~~~~l~~~di~~~n~~~~~~~-~-----~~~ 197 (290)
T cd01939 134 EGRN----PDETLRMMQHIEEHNNRRPEIRITISVEVEKPR------EELLELAAYCDVVFVSKDWAQSR-G-----YKS 197 (290)
T ss_pred eccC----HHHHHHHHHHHHHhcCcCCCcceEEEEEeccCc------hhhhhHHhhCCEEEEEhHHHHhc-C-----cCC
Confidence 9853 345567777777766 57888875321 23558899999999999988764 3 123
Q ss_pred HHHHHHHHhcCCCCCCCCccEEEEeeCCCCEEEEeC-CeEEEEecccCCCCcccCCCCcchhhHHHHHHHHhcCCC-HHH
Q 019402 237 VEEIALKISQWPKASGTHKRITVITQGADPVVVAED-GKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKP-VED 314 (341)
Q Consensus 237 ~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~-~~~~~v~~~~~~~~~vvdttGAGDaf~a~~~~~l~~g~~-~~~ 314 (341)
.+++++.+.. ...+++.+|||+|++|++++.+ ++.+++|+++. .+++|||||||+|.|||+|++++|++ +++
T Consensus 198 ~~~~~~~~~~----~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~--~~vvDt~GAGDsf~agfl~~l~~g~~~~~~ 271 (290)
T cd01939 198 PEECLRGEGP----RAKKAALLVCTWGDQGAGALGPDGEYVHSPAHKP--IRVVDTLGAGDTFNAAVIYALNKGPDDLSE 271 (290)
T ss_pred HHHHHHhhhh----hccCCcEEEEEcccCCeEEEcCCCCEEEecCCCC--CCcccCCCchHHHHHHHHHHHHcCCccHHH
Confidence 4454433211 2456889999999999999875 56777887643 26899999999999999999999995 999
Q ss_pred HHHHHHHHHhhhhhhccc
Q 019402 315 CVRTGCYAANVVIQRSGC 332 (341)
Q Consensus 315 a~~~A~~~aa~~v~~~g~ 332 (341)
|+++|+++|++++++.|.
T Consensus 272 a~~~a~a~aa~~i~~~G~ 289 (290)
T cd01939 272 ALDFGNRVASQKCTGVGF 289 (290)
T ss_pred HHHHHHHHHHHHHhhhcC
Confidence 999999999999999885
No 28
>TIGR03828 pfkB 1-phosphofructokinase. This enzyme acts in concert with the fructose-specific phosphotransferase system (PTS) which imports fructose as fructose-1-phosphate. The action of 1-phosphofructokinase results in beta-D-fructose-1,6-bisphosphate and is an entry point into glycolysis (GenProp0688).
Probab=100.00 E-value=7.1e-42 Score=308.50 Aligned_cols=289 Identities=18% Similarity=0.203 Sum_probs=231.5
Q ss_pred EEecCceeeeEeecCHHHHHHcCCCCCceEEecCcccchHHHHhccCCceeecCchhHHHHHHHHHHhCCCCceEEEEee
Q 019402 8 LGMGNPLLDISAVVDEEFLKKYDIKLNNAILAEDKHLPMYDELASKENVEYIAGGATQNSIKVAQWMLQIPGATSYIGCI 87 (341)
Q Consensus 8 ~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~~lg~~v~li~~v 87 (341)
+|.=++++|++..++ ++| +++.....+...++||.+.|+|.++++ + |.++.++|.+
T Consensus 3 ~~~~~~~~D~~~~~~--------------------~~~-~g~~~~~~~~~~~~GG~~~NvA~~la~-l--G~~v~~is~v 58 (304)
T TIGR03828 3 TVTLNPAIDLTIELD--------------------GLT-LGEVNRVESTRIDAGGKGINVSRVLKN-L--GVDVVALGFL 58 (304)
T ss_pred EEEcchHHeEEEEcc--------------------ccc-cCceeecccccccCCccHHHHHHHHHH-c--CCCeEEEEEe
Confidence 355678999999998 678 888888899999999999999999998 4 5999999999
Q ss_pred cCCchhHHHHHHHHhcCCceeEeecCCCCcceEEEEEe-CCeeceeecccccccCCcccCCC--chhHhhhhcceEEEEe
Q 019402 88 GKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVV-GGERSLVANLSAANCYKSEHLKR--PEIWSIVEKAKYYYIA 164 (341)
Q Consensus 88 G~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~i~ 164 (341)
|+| +|+.+++.|++.||++++++.. .+|+.++++.+ +|+++.+...++ .++++.+.. ....+.+++++++|++
T Consensus 59 G~D-~g~~~~~~L~~~gId~~~~~~~-~~t~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~v~~~ 134 (304)
T TIGR03828 59 GGF-TGDFIEALLREEGIKTDFVRVP-GETRINVKIKEPSGTETKLNGPGP--EISEEELEALLEKLRAQLAEGDWLVLS 134 (304)
T ss_pred cCc-hhHHHHHHHHHCCCcceEEECC-CCCeeeEEEEeCCCCEEEEECCCC--CCCHHHHHHHHHHHHHhccCCCEEEEE
Confidence 999 6999999999999999998654 35777777776 576665544432 344333322 0112357899999999
Q ss_pred cccc-ccCHHHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCCCCcEEEcCHHHHHHHHhhcCCCCCCHHHHHHH
Q 019402 165 GFFL-TVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGWETDNVEEIALK 243 (341)
Q Consensus 165 ~~~~-~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~ 243 (341)
++.. ..+++.+..+++.+++.+.++++|+..... ...+....|++++|++|++.+++....+.++..++++.
T Consensus 135 g~~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~~~-------~~~~~~~~~i~~~n~~E~~~l~g~~~~~~~~~~~~~~~ 207 (304)
T TIGR03828 135 GSLPPGVPPDFYAELIALAREKGAKVILDTSGEAL-------RDGLKAKPFLIKPNDEELEELFGRELKTLEEIIEAARE 207 (304)
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCEEEEECChHHH-------HHHHhcCCcEECcCHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 8754 356788999999999999999999975421 11223457899999999999987543333455566777
Q ss_pred HhcCCCCCCCCccEEEEeeCCCCEEEEeCCeEEEEecccCCCCcccCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 019402 244 ISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAA 323 (341)
Q Consensus 244 l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~v~~~~~~~~~vvdttGAGDaf~a~~~~~l~~g~~~~~a~~~A~~~a 323 (341)
+ ...+++.||||+|++|++++++++.++++++++ +++|||||||+|+|||+++|++|+++++|+++|+++|
T Consensus 208 l------~~~g~~~vvvT~G~~G~~~~~~~~~~~~~~~~~---~vvDttGAGDaF~a~~l~~l~~g~~~~~a~~~a~~~A 278 (304)
T TIGR03828 208 L------LDLGAENVLISLGADGALLVTKEGALFAQPPKG---EVVSTVGAGDSMVAGFLAGLESGLSLEEALRLAVAAG 278 (304)
T ss_pred H------HHcCCCEEEEccCCCCcEEEcCCceEEEeCCCc---cccCCcChHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 7 456788999999999999998887777776544 7899999999999999999999999999999999999
Q ss_pred hhhhhhccccCCCCCCC
Q 019402 324 NVVIQRSGCTYPPKPEF 340 (341)
Q Consensus 324 a~~v~~~g~~~p~~~e~ 340 (341)
+.+|++.|+.+|+++|+
T Consensus 279 a~~~~~~G~~~p~~~~~ 295 (304)
T TIGR03828 279 SAAAFSEGTGLPDPEDI 295 (304)
T ss_pred HHHhcCcCCCCCCHHHH
Confidence 99999999988887664
No 29
>cd01940 Fructoselysine_kinase_like Fructoselysine kinase-like. Fructoselysine is a fructoseamine formed by glycation, a non-enzymatic reaction of glucose with a primary amine followed by an Amadori rearrangement, resulting in a protein that is modified at the amino terminus and at the lysine side chains. Fructoseamines are typically metabolized by fructoseamine-3-kinase, especially in higher eukaryotes. In E. coli, fructoselysine kinase has been shown in vitro to catalyze the phosphorylation of fructoselysine. It is proposed that fructoselysine is released from glycated proteins during human digestion and is partly metabolized by bacteria in the hind gut using a protein such as fructoselysine kinase. This family is found only in bacterial sequences, and its oligomeric state is currently unknown.
Probab=100.00 E-value=3.1e-41 Score=298.27 Aligned_cols=261 Identities=17% Similarity=0.280 Sum_probs=212.3
Q ss_pred eEEEecCceeeeEeecCHHHHHHcCCCCCceEEecCcccchHHHHhccCCceeecCchhHHHHHHHHHHhCCCCceEEEE
Q 019402 6 ILLGMGNPLLDISAVVDEEFLKKYDIKLNNAILAEDKHLPMYDELASKENVEYIAGGATQNSIKVAQWMLQIPGATSYIG 85 (341)
Q Consensus 6 ~i~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~~lg~~v~li~ 85 (341)
||+++|++++|++... ...++||++.|+|.++++ + |.++.++|
T Consensus 1 ~v~~iG~~~~D~~~~~----------------------------------~~~~~GG~~~Nva~~la~-l--G~~~~~~~ 43 (264)
T cd01940 1 RLAAIGDNVVDKYLHL----------------------------------GKMYPGGNALNVAVYAKR-L--GHESAYIG 43 (264)
T ss_pred CeEEEcceEEEEeccC----------------------------------ceecCCCcHHHHHHHHHH-c--CCCeeEEe
Confidence 6899999999999621 357899999999999998 4 59999999
Q ss_pred eecCCchhHHHHHHHHhcCCceeEeecCCCCcceEEEEEeCCeeceeecc-cccccCCcccCCCchhHhhhhcceEEEEe
Q 019402 86 CIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVVGGERSLVANL-SAANCYKSEHLKRPEIWSIVEKAKYYYIA 164 (341)
Q Consensus 86 ~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~i~ 164 (341)
.+|+|.+|+.+++.|++.||++++++..+.+|+.+++...+|+|++..+. ++.....+.. ...+.++++|++|++
T Consensus 44 ~vG~D~~g~~i~~~l~~~gI~~~~v~~~~~~t~~~~~~~~~g~r~~~~~~~~~~~~~~~~~----~~~~~~~~~~~v~~~ 119 (264)
T cd01940 44 AVGNDDAGAHVRSTLKRLGVDISHCRVKEGENAVADVELVDGDRIFGLSNKGGVAREHPFE----ADLEYLSQFDLVHTG 119 (264)
T ss_pred cccCchhHHHHHHHHHHcCCChhheEEcCCCCceEEEEecCCceEEEeecCCcHHhcccCc----ccHhHHhcCCEEEEc
Confidence 99999999999999999999999986555678888765557888765542 3222222221 123567899999998
Q ss_pred ccccccCHHHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCCCCcEEEcCHHHHHHHHhhcCCCCCCHHHHHHHH
Q 019402 165 GFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGWETDNVEEIALKI 244 (341)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l 244 (341)
+... .+.+.++++.+++.++++++|++... ..+.+.++++++|++++|++|.. ..+.+++++.+
T Consensus 120 ~~~~---~~~~~~~~~~a~~~g~~v~~D~~~~~----~~~~~~~~~~~~d~~~~~~~~~~---------~~~~~~~~~~l 183 (264)
T cd01940 120 IYSH---EGHLEKALQALVGAGALISFDFSDRW----DDDYLQLVCPYVDFAFFSASDLS---------DEEVKAKLKEA 183 (264)
T ss_pred cccc---HHHHHHHHHHHHHcCCEEEEcCcccC----CHHHHHhhcccCCEEEechhhcC---------cchHHHHHHHH
Confidence 7532 56788999999999999999997542 12336678999999999987742 23456667777
Q ss_pred hcCCCCCCCCccEEEEeeCCCCEEEEeCCeEEEEecccCCCCcccCCCCcchhhHHHHHHHHhcCCC-HHHHHHHHHHHH
Q 019402 245 SQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKP-VEDCVRTGCYAA 323 (341)
Q Consensus 245 ~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~v~~~~~~~~~vvdttGAGDaf~a~~~~~l~~g~~-~~~a~~~A~~~a 323 (341)
...+++.+|||+|++|++++.+++.+++|++++ +++|||||||+|+|||++++++|++ +++|+++|+++|
T Consensus 184 ------~~~~~~~vvvT~G~~G~~~~~~~~~~~~~~~~~---~~vDttGAGDaf~ag~i~~l~~g~~~~~~al~~a~~~a 254 (264)
T cd01940 184 ------VSRGAKLVIVTRGEDGAIAYDGAVFYSVAPRPV---EVVDTLGAGDSFIAGFLLSLLAGGTAIAEAMRQGAQFA 254 (264)
T ss_pred ------HHcCCCEEEEEECCCCeEEEeCCeEEecCCcCC---CCCCCCCchHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 456788999999999999999888888886654 8899999999999999999999999 999999999999
Q ss_pred hhhhhhccc
Q 019402 324 NVVIQRSGC 332 (341)
Q Consensus 324 a~~v~~~g~ 332 (341)
+.++++.|+
T Consensus 255 a~~~~~~G~ 263 (264)
T cd01940 255 AKTCGHEGA 263 (264)
T ss_pred HHHhcccCC
Confidence 999999986
No 30
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (TIGR02199) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=100.00 E-value=1.3e-41 Score=308.26 Aligned_cols=298 Identities=18% Similarity=0.213 Sum_probs=224.4
Q ss_pred CcceEEEecCceeeeEee--cCHHHHHHcCCCCCceEEecCcccchHHHHhccCCceeecCchhHHHHHHHHHHhCCCCc
Q 019402 3 YEGILLGMGNPLLDISAV--VDEEFLKKYDIKLNNAILAEDKHLPMYDELASKENVEYIAGGATQNSIKVAQWMLQIPGA 80 (341)
Q Consensus 3 ~~~~i~~iG~~~~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~~lg~~ 80 (341)
+.++|+++|+.++|++.. ++. +.+ ..|.+ ..........+|| +.|+|.++++ + |.+
T Consensus 6 ~~~~il~iG~~~iD~~~~~~~~~--------------~~~--~~~~~--~~~~~~~~~~~GG-a~NvA~~l~~-l--g~~ 63 (315)
T TIGR02198 6 KGAKVLVVGDVMLDRYWYGKVSR--------------ISP--EAPVP--VVKVEREEDRLGG-AANVARNIAS-L--GAR 63 (315)
T ss_pred CCCcEEEECceeEeeeeeecccc--------------cCC--CCCCc--eEEEEEEEecCcH-HHHHHHHHHh-c--CCc
Confidence 367999999999999986 321 000 11221 2233455678899 8999999998 4 599
Q ss_pred eEEEEeecCCchhHHHHHHHHhcCCceeEe-ecCCCCcceEEEEEeCCeeceeecccccccCCcccCCC--chhHhhhhc
Q 019402 81 TSYIGCIGKDKFGEEMKKNSTAAGVNVKYY-EDESAPTGTCAVCVVGGERSLVANLSAANCYKSEHLKR--PEIWSIVEK 157 (341)
Q Consensus 81 v~li~~vG~D~~g~~i~~~l~~~gi~~~~~-~~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 157 (341)
+.++|.+|+|.+|+++++.|++.||+++++ +..+.+|+.++.+.+++.............++...... ....+.+++
T Consensus 64 v~~i~~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 143 (315)
T TIGR02198 64 VFLVGVVGDDEAGKRLEALLAEEGIDTSGLIRDKDRPTTTKTRVLARNQQLLRVDFEERDPINAELEARLLAAIREQLAS 143 (315)
T ss_pred eEEEEEEecchhHHHHHHHHHHCCCCcceEEECCCCCcceEEEEEcCCeEEEEecCCCCCCCCHHHHHHHHHHHHhhhhh
Confidence 999999999999999999999999999987 45667888888777643222222222111233211111 112355889
Q ss_pred ceEEEEeccc-cccCHHHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCCCCcEEEcCHHHHHHHHhhcCCCCCC
Q 019402 158 AKYYYIAGFF-LTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGWETDN 236 (341)
Q Consensus 158 ~~~v~i~~~~-~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~ 236 (341)
+|+++++++. ..++++.+..+++.+++.++++++|+.+.. ...++++|++++|++|++.+++. ..+.++
T Consensus 144 ~~~v~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~---------~~~~~~~d~l~~n~~E~~~l~~~-~~~~~~ 213 (315)
T TIGR02198 144 ADAVVLSDYAKGVLTPRVVQEVIAAARKHGKPVLVDPKGKD---------FSRYRGATLITPNRKEAEAAVGA-CDTEAE 213 (315)
T ss_pred CCEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEeCCCcc---------hhhcCCCcEECCCHHHHHHHhCC-CCCHHH
Confidence 9999998764 245778899999999999999999997542 13477899999999999999872 222344
Q ss_pred HHHHHHHHhcCCCCCCCCccEEEEeeCCCCEEEEeC-CeEEEEecccCCCCcccCCCCcchhhHHHHHHHHhcCCCHHHH
Q 019402 237 VEEIALKISQWPKASGTHKRITVITQGADPVVVAED-GKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDC 315 (341)
Q Consensus 237 ~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~-~~~~~v~~~~~~~~~vvdttGAGDaf~a~~~~~l~~g~~~~~a 315 (341)
.+++++.+. ...|++.+|||+|++|++++.+ +..+++|++++ +++||+||||+|.|||++++++|+++++|
T Consensus 214 ~~~~~~~l~-----~~~g~~~vivT~G~~G~~~~~~~~~~~~~~~~~~---~vvdt~GAGDaf~ag~~~~l~~g~~~~~a 285 (315)
T TIGR02198 214 LVQAAEKLL-----EELDLEALLVTRSEKGMTLFTREGEPIHIPAQAR---EVYDVTGAGDTVIATLALALAAGASLEEA 285 (315)
T ss_pred HHHHHHHHH-----HHcCCCEEEEEcCCCCeEEEecCCCeEEecCCCC---CCCCCcCccHHHHHHHHHHHHcCCCHHHH
Confidence 556666652 1357899999999999999874 56778876654 88999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhccccCCCCCCC
Q 019402 316 VRTGCYAANVVIQRSGCTYPPKPEF 340 (341)
Q Consensus 316 ~~~A~~~aa~~v~~~g~~~p~~~e~ 340 (341)
+++|+++|+++|++.|+..++.+|+
T Consensus 286 l~~A~~~aa~~~~~~G~~~~~~~~~ 310 (315)
T TIGR02198 286 CRLANAAAGVVVGKLGTATVSPAEL 310 (315)
T ss_pred HHHHHHHhhhhhccCCCCCCCHHHH
Confidence 9999999999999999987766554
No 31
>PLN02543 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=1.5e-41 Score=317.95 Aligned_cols=313 Identities=16% Similarity=0.189 Sum_probs=228.4
Q ss_pred cceEEEecCceeeeEeecCHHHHHHcCCCCCceEEecCcccchHHHHhccCCceeecCchhHHHHHHHHHHhCCCCceEE
Q 019402 4 EGILLGMGNPLLDISAVVDEEFLKKYDIKLNNAILAEDKHLPMYDELASKENVEYIAGGATQNSIKVAQWMLQIPGATSY 83 (341)
Q Consensus 4 ~~~i~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~~lg~~v~l 83 (341)
++.|+|+|++.+|++...... +. ++..+...+-++ -.+........+||.+.|+|+++++ ||.++.+
T Consensus 125 ~~~v~~~Ge~liDf~~~~~~~-~~--~~~~~~~~~~~~-------~~~~~~~f~~~~GGa~aNVAvaLAR---LG~~vaf 191 (496)
T PLN02543 125 PPLVCCFGAVQKEFVPTVRVH-DN--QMHPDMYSQWKM-------LQWDPPEFARAPGGPPSNVAISHVR---LGGRAAF 191 (496)
T ss_pred CCeEEEeChhhhhhcCCCccc-cc--cccccccccccc-------ccccCCeeEeccCcHHHHHHHHHHH---CCCCEEE
Confidence 356999999999999853210 00 000000000000 0112456788999999999999998 4599999
Q ss_pred EEeecCCchhHHHHHHHHhcCCceeEee-cCCCCcceEEEEEe--CCeecee--ecccccccCCcccCCCchhHhhhhcc
Q 019402 84 IGCIGKDKFGEEMKKNSTAAGVNVKYYE-DESAPTGTCAVCVV--GGERSLV--ANLSAANCYKSEHLKRPEIWSIVEKA 158 (341)
Q Consensus 84 i~~vG~D~~g~~i~~~l~~~gi~~~~~~-~~~~~t~~~~~~~~--~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (341)
+|.||+|.+|+++++.|++.||+++++. ..+.+|+.+++.++ ++.+.+. ...+++..+.+++++. ..+.++
T Consensus 192 IG~VGdD~fG~~l~~~L~~~GVDts~v~~~~~~~Tgla~V~v~~~~~gr~~~~~~~~gA~~~L~~~di~~----~~l~~a 267 (496)
T PLN02543 192 MGKVGDDDFGEELVLMMNKERVQTRAVKFDENAKTACSRMKIKFRDGGKMVAETVKEAAEDSLLASELNL----AVLKEA 267 (496)
T ss_pred EEEeCCCHHHHHHHHHHHHcCCcccceEecCCCCCceEEEEEEeCCCCCEEEEecCCCHHHhCChhhcCH----hHhCCC
Confidence 9999999999999999999999999985 56678999988874 3335443 2345556777777664 568899
Q ss_pred eEEEEeccccccC--HHHHHHHHHHHHhcCCeEEEeCC--cHHHH--hhhhHHHHhhCCCCcEEEcCHHHHHHHHhhcCC
Q 019402 159 KYYYIAGFFLTVS--PESIQMVAEHAAAKNKVFMMNLS--APFIC--EFFREPQEKALPYMDYVFGNETEARTFAKVHGW 232 (341)
Q Consensus 159 ~~v~i~~~~~~~~--~~~~~~~~~~~~~~~~~v~~d~~--~~~~~--~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~ 232 (341)
+++|+++..+..+ .+....+++.+++.|+++++|+. .+.|. ....+.+.++++++|++++|++|++.|++....
T Consensus 268 ~ilh~~~~~l~~~~~~~a~~~al~~Ak~~G~~VsfDpN~R~~LW~~~~~~~~~i~~~l~~aDIl~~SeeEa~~Ltg~~~~ 347 (496)
T PLN02543 268 RMFHFNSEVLTSPSMQSTLFRAIELSKKFGGLIFFDLNLPLPLWRSRDETRELIKKAWNEADIIEVSRQELEFLLDEDYY 347 (496)
T ss_pred ceEEECChhhcCchHHHHHHHHHHHHHHCCCEEEEeCCCCccccCCHHHHHHHHHHHHHhCCEEEecHHHHHHHhCCCcc
Confidence 9999998764222 37888999999999999999985 34553 224556788999999999999999999863210
Q ss_pred ------CC------------------CCHHHHHHHHhcCCCCCCCCccEEEEeeCCCCEEEEeCCeEEEEecc---cCCC
Q 019402 233 ------ET------------------DNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVI---LLPK 285 (341)
Q Consensus 233 ------~~------------------~~~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~v~~~---~~~~ 285 (341)
+. .+.+.+ ..+ ...+++.||||+|++|+++++++..-.++.. .++
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l------~~~g~~~VVVT~G~~Ga~~~t~~~~g~v~~~~~~~v~- 419 (496)
T PLN02543 348 ERKRNYPPQYYAESFEQTKNWRDYYHYTPEEI-APL------WHDGLKLLLVTDGTLRIHYYTPKFDGVVVGTEDVLIT- 419 (496)
T ss_pred cccccccchhhhhhhhhhhcccccccCCHHHH-HHH------HHCCCCEEEEEcCCCcEEEEECCCcccccccccccCC-
Confidence 00 123333 344 3457899999999999999976422222111 111
Q ss_pred CcccCCCCcchhhHHHHHHHHhc-------CCCHHHHHHHHHHHHhhhhhhccc--cCCCCCCCC
Q 019402 286 EKLVDTNGAGDAFVGGFLSQLVQ-------EKPVEDCVRTGCYAANVVIQRSGC--TYPPKPEFN 341 (341)
Q Consensus 286 ~~vvdttGAGDaf~a~~~~~l~~-------g~~~~~a~~~A~~~aa~~v~~~g~--~~p~~~e~~ 341 (341)
..+||||||||+|+|||+++|++ ++++++|++||+++||++|++.|+ .+|+.+|++
T Consensus 420 ~~~VDTTGAGDAF~AGfL~~Ll~~~~~~~~g~~l~ealrfAnAaaAl~vt~~GA~~~lPt~~ev~ 484 (496)
T PLN02543 420 PFTCDRTGSGDAVVAAIMRKLTTCPEMFEDQDVLERQLRFAVAAGIISQWTIGAVRGFPTESATQ 484 (496)
T ss_pred CCCcCCCchHHHHHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHH
Confidence 13589999999999999999985 779999999999999999999998 578877653
No 32
>cd01943 MAK32 MAK32 kinase. MAK32 is a protein found primarily in fungi that is necessary for the structural stability of L-A particles. The L-A virus particule is a specialized compartment for the transcription and replication of double-stranded RNA, known to infect yeast and other fungi. MAK32 is part of the host machinery used by the virus to multiply.
Probab=100.00 E-value=2.2e-41 Score=307.05 Aligned_cols=289 Identities=20% Similarity=0.169 Sum_probs=224.2
Q ss_pred eEEEecCceeeeEeecCHHHHHHcCCCCCceEEecCcccchHHHHhccCCceeecCchhHHHHHHHHHHhCCCCce--EE
Q 019402 6 ILLGMGNPLLDISAVVDEEFLKKYDIKLNNAILAEDKHLPMYDELASKENVEYIAGGATQNSIKVAQWMLQIPGAT--SY 83 (341)
Q Consensus 6 ~i~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~~lg~~v--~l 83 (341)
+++++|++++|.+...+. ......+||++.|+|+++++|++.+.++ .+
T Consensus 1 ~~~~~G~~~~d~i~~~~~------------------------------~~~~~~~GG~~~N~A~~~~~l~g~~~~~~~~~ 50 (328)
T cd01943 1 DFTTLGMFIIDEIEYPDS------------------------------EPVTNVLGGAGTYAILGARLFLPPPLSRSISW 50 (328)
T ss_pred CccccCcEEeeccccCCC------------------------------CccccccCCchhhHhhceeeecCCccccceee
Confidence 478999999999986541 4556789999999999998732322366 88
Q ss_pred EEeecCCchhHHHHHHHHhcCCceeEeecCCCCcceEEEEEe-CCeeceeecccccccCCcccCCCchhHhhhhcceEEE
Q 019402 84 IGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVV-GGERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYY 162 (341)
Q Consensus 84 i~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 162 (341)
++.+|+| +|+++++.|++.||++++.+..+.+|+.++++++ +|+|.++...+++..+++++++. ..+..++++|
T Consensus 51 ~~~vG~D-~G~~l~~~L~~~GVd~~~~~~~~~~Tg~~~v~~~~~g~r~~~~~~~~~~~~~~~~l~~----~~~~~a~~~h 125 (328)
T cd01943 51 IVDKGSD-FPKSVEDELESWGTGMVFRRDPGRLTTRGLNIYDGNDRRFFKYLTPKKRIDVSDDLNS----TPLIRSSCIH 125 (328)
T ss_pred EEecCCC-CCHHHHHHHHhcCCceEEEeCCCCcchhhhhhcCCCCcceeeecCccccccccccccc----ccccCCCeEE
Confidence 9999999 9999999999999999985456778998888876 57777766667777777777764 4577899999
Q ss_pred EeccccccCHHHHHHHHHHHHh------cCCeEEEeCCcHHHHhhhhHHHHhhCCCCcEEEcCHHHHHHHHhhcCCCCCC
Q 019402 163 IAGFFLTVSPESIQMVAEHAAA------KNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGWETDN 236 (341)
Q Consensus 163 i~~~~~~~~~~~~~~~~~~~~~------~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~ 236 (341)
+++.... ..+...++++.+++ .+.++.+|+.........++.+.++++++|++++|++|+..+++....+...
T Consensus 126 l~~~~~~-~~~~~~~~~~~a~~~~~d~~~g~~~~~d~~~~~~~~~~~~~l~~~l~~~dil~~n~~Ea~~l~g~~~~~~~~ 204 (328)
T cd01943 126 LICSPER-CASIVDDIINLFKLLKGNSPTRPKIVWEPLPDSCDPENLEDLLQALPRVDVFSPNLEEAARLLGLPTSEPSS 204 (328)
T ss_pred EECCHHH-HHHHHHHHHHHHHhhccccCCccEEEEecCCcccChhhHHHHHHHhccCCEECCCHHHHHHHhCCCCCCccc
Confidence 9875321 22678888899888 7888989986432211123457899999999999999999998754332221
Q ss_pred HHHHH-----HHHhcCCCCCCCCccEEEEeeCCCCEEEEe--CCeEEEEecccCCCCcccCCCCcchhhHHHHHHHHhcC
Q 019402 237 VEEIA-----LKISQWPKASGTHKRITVITQGADPVVVAE--DGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQE 309 (341)
Q Consensus 237 ~~~~~-----~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~--~~~~~~v~~~~~~~~~vvdttGAGDaf~a~~~~~l~~g 309 (341)
.++.. ..+..+ ...+++.||||+|++|+++++ +++.+++|++++++.+++|||||||+|+|||+++|++|
T Consensus 205 ~~~~~~~~~~~~~~~~---~~~g~~~vvvt~G~~Ga~~~~~~~~~~~~~p~~~v~~~~vvDttGAGDaF~agfl~~l~~g 281 (328)
T cd01943 205 DEEKEAVLQALLFSGI---LQDPGGGVVLRCGKLGCYVGSADSGPELWLPAYHTKSTKVVDPTGGGNSFLGGFAAGLALT 281 (328)
T ss_pred hhhhhhhHHHHHHHhh---hccCCCEEEEEeCCCCCEEEecCCCceEecCCccCCCCcccCCCCchHHHHHHHHHHHHcC
Confidence 22211 111111 245788999999999999987 45677888776545589999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhhhhhcccc
Q 019402 310 KPVEDCVRTGCYAANVVIQRSGCT 333 (341)
Q Consensus 310 ~~~~~a~~~A~~~aa~~v~~~g~~ 333 (341)
+++++|+++|+++|++++++.|..
T Consensus 282 ~~~~~al~~a~a~Aa~~v~~~G~~ 305 (328)
T cd01943 282 KSIDEACIYGSVAASFAIEQVGLP 305 (328)
T ss_pred CCHHHHHHHHHHHHHHHHccCCCC
Confidence 999999999999999999999963
No 33
>KOG2855 consensus Ribokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.3e-41 Score=293.48 Aligned_cols=298 Identities=22% Similarity=0.319 Sum_probs=239.0
Q ss_pred CcceEEEecCceeeeEeecCHHHHHHcCCCCCceEEecCcccchHHHHhccCCceeecCchhHHHHHHHHHHhCCCCceE
Q 019402 3 YEGILLGMGNPLLDISAVVDEEFLKKYDIKLNNAILAEDKHLPMYDELASKENVEYIAGGATQNSIKVAQWMLQIPGATS 82 (341)
Q Consensus 3 ~~~~i~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~~lg~~v~ 82 (341)
.++.|+|+|+..+|++...+ .+|..++..........+||.+.|+|++++| ||.++.
T Consensus 8 ~~~~vv~fGs~~~D~V~~~~--------------------~~p~~ge~~~~~~f~~~~GG~~aN~Avaaar---LG~~~a 64 (330)
T KOG2855|consen 8 EPPLVVVFGSMLIDFVPSTR--------------------RLPNAGETWEPPGFKTAPGGKGANQAVAAAR---LGGRVA 64 (330)
T ss_pred CCceEEEeccceeeeeeccc--------------------cCCCccccccCCcceecCCCcchhhhhHHHh---cCccee
Confidence 36689999999999999887 6899999999999999999999999999999 459999
Q ss_pred EEEeecCCchhHHHHHHHHhcCCceeEee-cCCCCcceEEEEEe-CCeeceeecccccccCCcccCCCchhHhhhhcceE
Q 019402 83 YIGCIGKDKFGEEMKKNSTAAGVNVKYYE-DESAPTGTCAVCVV-GGERSLVANLSAANCYKSEHLKRPEIWSIVEKAKY 160 (341)
Q Consensus 83 li~~vG~D~~g~~i~~~l~~~gi~~~~~~-~~~~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (341)
+||.||+|.||..+.+.|++++|+++++. ..+..|+.+++.+. +|++.+..+.+++....++..+ ...+.++++.+
T Consensus 65 fiGkvGdD~fG~~l~~~L~~~~V~~~~v~~~~~~~T~~a~i~v~~dG~~~~~~v~gan~~~~~~~se--~~~~~i~~ak~ 142 (330)
T KOG2855|consen 65 FIGKVGDDEFGDDLLDILKQNGVDTSGVKFDENARTACATITVSKDGENRIIFVRGANADMLPEDSE--LNLEVIKEAKV 142 (330)
T ss_pred eeecccchhhHHHHHHHHhhCCcccccceecCCCceEEEEEEEccCCceEEEEEecCchhcCccccc--ccHHHHhhccE
Confidence 99999999999999999999999999995 67888998888886 8999998888888877766532 35588999999
Q ss_pred EEEeccccccCHHHHHHH--HHHHHhcCCeEE--EeCCcHHHHhh--hhHHHHhhCCCCcEEEcCHHHHHHHHhhcCCCC
Q 019402 161 YYIAGFFLTVSPESIQMV--AEHAAAKNKVFM--MNLSAPFICEF--FREPQEKALPYMDYVFGNETEARTFAKVHGWET 234 (341)
Q Consensus 161 v~i~~~~~~~~~~~~~~~--~~~~~~~~~~v~--~d~~~~~~~~~--~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~ 234 (341)
+++....+.-.+....++ .+.+++.+..+. .++.-+.|... ++..+..++..+|++.++.+|+..+++.
T Consensus 143 ~~~q~ei~~~~~~~s~~~~~~~~~~~~g~~i~~~pn~~l~l~~~~~~ne~e~~~i~~~adv~~~s~~e~~fl~~~----- 217 (330)
T KOG2855|consen 143 FHCQSEILIEEPMRSLHIAAVKVAKNAGPAIFYDPNLRLPLWDSLEENESEIASIWNMADVIKVSSQELAFLTGI----- 217 (330)
T ss_pred EEEeeecCCcchhHHHHHhhhhhhhcccccccCCCCccccccccccccHHHHHHHhhhhhcccccHHHHHHhccC-----
Confidence 999876543333223333 335555554433 34444455432 4444777788888888888888888764
Q ss_pred CCHHHHHHHHhcCCCCCCCCccEEEEeeCCCCEEEEeCCeEE-EEecccCCCCcccCCCCcchhhHHHHHHHHhcC--CC
Q 019402 235 DNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVK-LFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQE--KP 311 (341)
Q Consensus 235 ~~~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~-~v~~~~~~~~~vvdttGAGDaf~a~~~~~l~~g--~~ 311 (341)
++ .+.. +| +..+.+.||||+|++||.||+++..- ++|++.+ ++||||||||+|+|||+.+|.+| .+
T Consensus 218 ~~-~~~~-~L------~~~~~k~viVTlG~kG~~y~tk~~~~~~v~~~~V---~~VDtTGAGDsFvgal~~~L~~~~~~~ 286 (330)
T KOG2855|consen 218 ED-DKIL-KL------WHMKLKLVIVTLGEKGCRYYTKDFKGSHVPAFKV---KAVDTTGAGDSFVGALAVQLVRGSLLP 286 (330)
T ss_pred cc-chHH-HH------hccCCCEEEEEeCCCceEEEecCCCCCCCCCccc---ccccCCCchHHHHHHHHHHHhhccccc
Confidence 11 1222 44 45566999999999999999887554 7777655 79999999999999999999999 66
Q ss_pred ---HHHHHHHHHHHHhhhhhhccc--cCCCCCCCC
Q 019402 312 ---VEDCVRTGCYAANVVIQRSGC--TYPPKPEFN 341 (341)
Q Consensus 312 ---~~~a~~~A~~~aa~~v~~~g~--~~p~~~e~~ 341 (341)
+++++++|+++++.++++.|+ .+|..++.|
T Consensus 287 ~~~L~~~l~~A~a~~ai~v~~~Ga~~s~p~~~~~~ 321 (330)
T KOG2855|consen 287 ELSLEEALRFANACGAITVQRKGAIPSMPTEKEVQ 321 (330)
T ss_pred hHHHHHHHHHHHHhhhHHhhccCCCccCccHHHHH
Confidence 999999999999999999999 688877654
No 34
>PRK09513 fruK 1-phosphofructokinase; Provisional
Probab=100.00 E-value=8.4e-41 Score=302.36 Aligned_cols=295 Identities=18% Similarity=0.150 Sum_probs=233.2
Q ss_pred CCCcceEEEecCceeeeEeecCHHHHHHcCCCCCceEEecCcccchHHHHhccCCceeecCchhHHHHHHHHHHhCCCCc
Q 019402 1 MAYEGILLGMGNPLLDISAVVDEEFLKKYDIKLNNAILAEDKHLPMYDELASKENVEYIAGGATQNSIKVAQWMLQIPGA 80 (341)
Q Consensus 1 m~~~~~i~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~~lg~~ 80 (341)
||.| -+++.=++++|++..++ ++| +++..+..+...++||++.|+|.++++ + |.+
T Consensus 1 ~~~~-~~~~~~~p~~D~~~~~~--------------------~~~-~~~~~~~~~~~~~~GG~~~Nva~~la~-l--G~~ 55 (312)
T PRK09513 1 MSRR-VATITLNPAYDLVGFCP--------------------EIE-RGEVNLVKTTGLHAAGKGINVAKVLKD-L--GID 55 (312)
T ss_pred CCce-EEEEecChHHeEEEEcC--------------------cee-cCCeeeecceeecCCchHHHHHHHHHH-c--CCC
Confidence 5543 45588899999999998 577 588888899999999999999999998 4 599
Q ss_pred eEEEEeecCCchhHHHHHHHHhcCCceeEeecCCCCcceEEEEEe-CCeeceeecccccccCCcccCCC--chhHhhhhc
Q 019402 81 TSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVV-GGERSLVANLSAANCYKSEHLKR--PEIWSIVEK 157 (341)
Q Consensus 81 v~li~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 157 (341)
+.++|.+|+|.+|++ .+.|+++||++.+++.. .+|+.++.+.+ +|+++.+...+. .+++.+... ....+.+++
T Consensus 56 ~~~i~~vG~D~~~~~-~~~l~~~gv~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~ 131 (312)
T PRK09513 56 VTVGGFLGKDNQDGF-QQLFSELGIANRFQVVQ-GRTRINVKLTEKDGEVTDFNFSGF--EVTPADWERFVTDSLSWLGQ 131 (312)
T ss_pred eEEEEEecCccHHHH-HHHHHHcCCCccEEECC-CCCEEEEEEEeCCCcEEEEeCCCC--CCCHHHHHHHHHHHHhhcCC
Confidence 999999999999987 58899999998877554 36887777776 577765554331 233332221 012345789
Q ss_pred ceEEEEecccc-ccCHHHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCCCCcEEEcCHHHHHHHHhhcCCCCCC
Q 019402 158 AKYYYIAGFFL-TVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGWETDN 236 (341)
Q Consensus 158 ~~~v~i~~~~~-~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~ 236 (341)
+|++|+++... ..+.+.+..+++.+++.|.++++|++.... ...+....|++++|++|+..+++....+.++
T Consensus 132 ~d~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~-------~~~~~~~~~~l~~n~~E~~~l~g~~~~~~~~ 204 (312)
T PRK09513 132 FDMVAVSGSLPRGVSPEAFTDWMTRLRSQCPCIIFDSSREAL-------VAGLKAAPWLVKPNRRELEIWAGRKLPELKD 204 (312)
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHhcCCEEEEECChHHH-------HHHhccCCeEEcCCHHHHHHHhCCCCCCHHH
Confidence 99999998754 345678889999999999999999975321 2234457889999999999998754333344
Q ss_pred HHHHHHHHhcCCCCCCCCccEEEEeeCCCCEEEEeCCeEEEEecccCCCCcccCCCCcchhhHHHHHHHHhcCCCHHHHH
Q 019402 237 VEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCV 316 (341)
Q Consensus 237 ~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~v~~~~~~~~~vvdttGAGDaf~a~~~~~l~~g~~~~~a~ 316 (341)
..++++.+ ...+++.+|||+|++|++++.+++.++++++++ +++|||||||+|+|||++++++|+++++|+
T Consensus 205 ~~~~~~~l------~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~---~~vDttGAGDaf~ag~i~~l~~g~~~~~a~ 275 (312)
T PRK09513 205 VIEAAHAL------REQGIAHVVISLGAEGALWVNASGEWIAKPPAC---DVVSTVGAGDSMVGGLIYGLLMRESSEHTL 275 (312)
T ss_pred HHHHHHHH------HHcCCCEEEEEeCCCCcEEEeCCceEEecCCCc---cccCCCChHHHHHHHHHHHHHcCCCHHHHH
Confidence 55677777 456789999999999999988877777776544 899999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhccccCCCCCCC
Q 019402 317 RTGCYAANVVIQRSGCTYPPKPEF 340 (341)
Q Consensus 317 ~~A~~~aa~~v~~~g~~~p~~~e~ 340 (341)
++|+++|++++++.|..+|+.+|+
T Consensus 276 ~~A~a~Aa~~~~~~~~~~~~~~e~ 299 (312)
T PRK09513 276 RLATAVSALAVSQSNVGITDRPQL 299 (312)
T ss_pred HHHHHHHHHHhhCCCCCCCCHHHH
Confidence 999999999999999888876654
No 35
>cd01941 YeiC_kinase_like YeiC-like sugar kinase. Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=1.2e-40 Score=298.28 Aligned_cols=283 Identities=20% Similarity=0.273 Sum_probs=221.4
Q ss_pred eEEEecCceeeeEeecCHHHHHHcCCCCCceEEecCcccchHHHHhccCCceeecCchhHHHHHHHHHHhCCCCceEEEE
Q 019402 6 ILLGMGNPLLDISAVVDEEFLKKYDIKLNNAILAEDKHLPMYDELASKENVEYIAGGATQNSIKVAQWMLQIPGATSYIG 85 (341)
Q Consensus 6 ~i~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~~lg~~v~li~ 85 (341)
.|+++|++++|++..++ +.|.+++... ......+||+++|+|.++++ + |.++.++|
T Consensus 1 ~v~~~G~~~~D~~~~~~--------------------~~~~~~~~~~-~~~~~~~GG~~~Nva~~l~~-l--G~~~~~~~ 56 (288)
T cd01941 1 EIVVIGAANIDLRGKVS--------------------GSLVPGTSNP-GHVKQSPGGVGRNIAENLAR-L--GVSVALLS 56 (288)
T ss_pred CeEEEEeEEEeeeeccc--------------------CccccCCCCC-eeEEEccCcHHHHHHHHHHH-h--CCCcEEEE
Confidence 38999999999999887 3455554443 35678999999999999998 4 49999999
Q ss_pred eecCCchhHHHHHHHHhcCCceeEeecCCCCcceEEEEEe-CCeecee-ecccccccCCcccCCCchhHhhhhcceEEEE
Q 019402 86 CIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVV-GGERSLV-ANLSAANCYKSEHLKRPEIWSIVEKAKYYYI 163 (341)
Q Consensus 86 ~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i 163 (341)
.+|+|++|+.+++.|++.||++.++...+.+|+.+++.++ +|++.+. ........++++.++ ...+.+.+++++++
T Consensus 57 ~lG~D~~g~~i~~~L~~~gI~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~v~~ 134 (288)
T cd01941 57 AVGDDSEGESILEESEKAGLNVRGIVFEGRSTASYTAILDKDGDLVVALADMDIYELLTPDFLR--KIREALKEAKPIVV 134 (288)
T ss_pred EEecCccHHHHHHHHHHcCCccceeeeCCCCcceEEEEECCCCCEEEEEechHhhhhCCHHHHH--HHHHHHhcCCEEEE
Confidence 9999999999999999999999988766678999888886 5777752 222222233332221 12356889999998
Q ss_pred eccccccCHHHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCCCCcEEEcCHHHHHHHHhhcCCCCCCHHHHHHH
Q 019402 164 AGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGWETDNVEEIALK 243 (341)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~ 243 (341)
++ ..+++.+..+++.+++.+.++++|+..... .++ +.++++++|++++|++|++.+++....+.....++++.
T Consensus 135 ~~---~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~---~~~-~~~~~~~~dii~~n~~E~~~~~~~~~~~~~~~~~~~~~ 207 (288)
T cd01941 135 DA---NLPEEALEYLLALAAKHGVPVAFEPTSAPK---LKK-LFYLLHAIDLLTPNRAELEALAGALIENNEDENKAAKI 207 (288)
T ss_pred eC---CCCHHHHHHHHHhhhhcCCcEEEEccchHH---hcc-chhhcccceEEeCCHHHHHHHhCcccCCchhHHHHHHH
Confidence 76 456678889999999999999999864321 111 12588999999999999999987543332333455566
Q ss_pred HhcCCCCCCCCccEEEEeeCCCCEEEEeC---CeEEEEecccCCCCcccCCCCcchhhHHHHHHHHhcCCCHHHHHHHHH
Q 019402 244 ISQWPKASGTHKRITVITQGADPVVVAED---GKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGC 320 (341)
Q Consensus 244 l~~~~~~~~~~~~~vvvt~G~~G~~~~~~---~~~~~v~~~~~~~~~vvdttGAGDaf~a~~~~~l~~g~~~~~a~~~A~ 320 (341)
+ ...+++.+|+|+|++|++++.+ +..+++|++ ..++++|||||||+|.|||++++++|+++++|+++|+
T Consensus 208 ~------~~~~~~~vvit~G~~Ga~~~~~~~~~~~~~~~~~--~~~~~vDttGAGDaf~a~~~~~l~~g~~~~~al~~a~ 279 (288)
T cd01941 208 L------LLPGIKNVIVTLGAKGVLLSSREGGVETKLFPAP--QPETVVNVTGAGDAFVAGLVAGLLEGMSLDDSLRFAQ 279 (288)
T ss_pred H------HHcCCcEEEEEeCCCcEEEEecCCCceeEEecCC--CCccceeCCCcHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 6 5567899999999999999986 566788863 1348999999999999999999999999999999999
Q ss_pred HHHhhhhhh
Q 019402 321 YAANVVIQR 329 (341)
Q Consensus 321 ~~aa~~v~~ 329 (341)
++|+.+|+.
T Consensus 280 ~~Aa~~~~~ 288 (288)
T cd01941 280 AAAALTLES 288 (288)
T ss_pred HHHHHHhcC
Confidence 999999873
No 36
>PRK10294 6-phosphofructokinase 2; Provisional
Probab=100.00 E-value=1.1e-40 Score=301.16 Aligned_cols=291 Identities=18% Similarity=0.186 Sum_probs=229.5
Q ss_pred eEEEecCceeeeEeecCHHHHHHcCCCCCceEEecCcccchHHHHhccCCceeecCchhHHHHHHHHHHhCCCCceEEEE
Q 019402 6 ILLGMGNPLLDISAVVDEEFLKKYDIKLNNAILAEDKHLPMYDELASKENVEYIAGGATQNSIKVAQWMLQIPGATSYIG 85 (341)
Q Consensus 6 ~i~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~~lg~~v~li~ 85 (341)
-+++.=++++|+++.++ +++ ++...++......+||+++|+|.++++ + |.++.+++
T Consensus 4 i~~~~~~p~~d~~~~~~--------------------~~~-~~~~~~~~~~~~~~GG~~~NvA~~l~~-l--G~~~~~i~ 59 (309)
T PRK10294 4 IYTLTLAPSLDSATITP--------------------QIY-PEGKLRCSAPVFEPGGGGINVARAIAH-L--GGSATAIF 59 (309)
T ss_pred EEEEecChHHeEEEEeC--------------------cee-eCCeEEeccceecCCccHHHHHHHHHH-c--CCCeEEEE
Confidence 67788999999999998 564 667778888899999999999999998 4 59999999
Q ss_pred eecCCchhHHHHHHHHhcCCceeEeecCCCCcceEEEEEe-CCeeceeecccccccCCcccCCCc-hhHhhhhcceEEEE
Q 019402 86 CIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVV-GGERSLVANLSAANCYKSEHLKRP-EIWSIVEKAKYYYI 163 (341)
Q Consensus 86 ~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~i 163 (341)
.+|+ .+|+.+++.|++.||++.++...+..++.+++..+ +|++.++...++ .++.++++.. +..+.+++++++++
T Consensus 60 ~vG~-~~g~~i~~~l~~~gv~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~i 136 (309)
T PRK10294 60 PAGG-ATGEHLVSLLADENVPVATVEAKDWTRQNLHVHVEASGEQYRFVMPGA--ALNEDEFRQLEEQVLEIESGAILVI 136 (309)
T ss_pred EecC-ccHHHHHHHHHHcCCCceEEECCCCCeeeEEEEEcCCCcEEEEECCCC--CCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 9996 79999999999999999999654444444444555 577665554442 2444433321 11234678999999
Q ss_pred ecccc-ccCHHHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCCCCcEEEcCHHHHHHHHhhcCCCCCCHHHHHH
Q 019402 164 AGFFL-TVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGWETDNVEEIAL 242 (341)
Q Consensus 164 ~~~~~-~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~ 242 (341)
+++.+ ..+.+.+.++++.+++.|.++++|+..... ++. ..++++|++++|++|+..+++....+.++++++++
T Consensus 137 ~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~----~~~--~~~~~~~~i~~n~~E~~~l~g~~~~~~~~~~~a~~ 210 (309)
T PRK10294 137 SGSLPPGVKLEKLTQLISAAQKQGIRCIIDSSGDAL----SAA--LAIGNIELVKPNQKELSALVNRDLTQPDDVRKAAQ 210 (309)
T ss_pred eCCCCCCCCHHHHHHHHHHHHHcCCeEEEeCCCHHH----HHH--HhcCCCeEECCCHHHHHHHhCCCCCCHHHHHHHHH
Confidence 98754 345688999999999999999999975421 111 12568999999999999998755444445667777
Q ss_pred HHhcCCCCCCCC-ccEEEEeeCCCCEEEEeCCeEEEEecccCCCCcccCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHH
Q 019402 243 KISQWPKASGTH-KRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCY 321 (341)
Q Consensus 243 ~l~~~~~~~~~~-~~~vvvt~G~~G~~~~~~~~~~~v~~~~~~~~~vvdttGAGDaf~a~~~~~l~~g~~~~~a~~~A~~ 321 (341)
.+ ++.+ ++.+|||+|++|++++++++.++++++++ +++|||||||+|+|||+++|++|+++++|+++|++
T Consensus 211 ~l------~~~~~~~~vvvT~G~~G~~~~~~~~~~~~~~~~v---~vvDttGAGDaf~ag~l~~l~~g~~~~~al~~a~a 281 (309)
T PRK10294 211 EL------VNSGKAKRVVVSLGPQGALGVDSENCIQVVPPPV---KSQSTVGAGDSMVGAMTLKLAENASLEEMVRFGVA 281 (309)
T ss_pred HH------HHcCCCCEEEEecCCCceEEEcCCccEEEeCCCc---ccCCCcchHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 77 4444 78999999999999998877777886654 78999999999999999999999999999999999
Q ss_pred HHhhhhhhccccCCCCC
Q 019402 322 AANVVIQRSGCTYPPKP 338 (341)
Q Consensus 322 ~aa~~v~~~g~~~p~~~ 338 (341)
+|+++|++.|++.+..+
T Consensus 282 ~aa~~v~~~G~~~~~~~ 298 (309)
T PRK10294 282 AGSAATLNQGTRLCSHD 298 (309)
T ss_pred HHHHHhcCCCCCCCCHH
Confidence 99999999999765543
No 37
>PRK13508 tagatose-6-phosphate kinase; Provisional
Probab=100.00 E-value=4.2e-40 Score=297.38 Aligned_cols=288 Identities=16% Similarity=0.180 Sum_probs=223.2
Q ss_pred eEEEecCceeeeEeecCHHHHHHcCCCCCceEEecCcccchHHHHhccCCceeecCchhHHHHHHHHHHhCCCCceEEEE
Q 019402 6 ILLGMGNPLLDISAVVDEEFLKKYDIKLNNAILAEDKHLPMYDELASKENVEYIAGGATQNSIKVAQWMLQIPGATSYIG 85 (341)
Q Consensus 6 ~i~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~~lg~~v~li~ 85 (341)
-+++..++++|++..++ ++|..+ ..........+||.+.|+|.++++ ||.++.++|
T Consensus 2 ~~~~t~np~~D~~~~~~--------------------~~~~~~-~~~~~~~~~~~GG~~~NvA~~la~---LG~~~~~~~ 57 (309)
T PRK13508 2 ILTVTLNPSIDISYPLD--------------------ELKLDT-VNRVVDVSKTAGGKGLNVTRVLSE---FGENVLATG 57 (309)
T ss_pred EEEEecChHHeEEEEeC--------------------CeeeCC-eEEecceeecCCchHHHHHHHHHH---cCCCeEEEE
Confidence 46788999999999998 454443 445567889999999999999998 459999999
Q ss_pred eecCCchhHHHHHHHHhcCCceeEeecCCCCcceEEEEEeCCeeceeecccccccCCcccCCC--chhHhhhhcceEEEE
Q 019402 86 CIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVVGGERSLVANLSAANCYKSEHLKR--PEIWSIVEKAKYYYI 163 (341)
Q Consensus 86 ~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~i 163 (341)
.+|+ .+|+.+++.|++ ||++++++.. .+|+.+.+++++|+++++...++ .++.+.... ....+.+.++|++|+
T Consensus 58 ~vGd-~~G~~i~~~l~~-gI~~~~~~~~-~~t~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~ 132 (309)
T PRK13508 58 LIGG-ELGQFIAEHLDD-QIKHAFYKIK-GETRNCIAILHEGQQTEILEKGP--EISVQEADGFLHHFKQLLESVEVVAI 132 (309)
T ss_pred EecC-hhHHHHHHHHHc-CCCceEEECC-CCCeeeEEEEeCCCEEEEECCCC--CCCHHHHHHHHHHHHHhccCCCEEEE
Confidence 9996 689999999999 9999987654 35777777777788877665543 233322211 112345789999999
Q ss_pred eccccc-cCHHHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCCCCcEEEcCHHHHHHHHhhcCC-CCCCHHHHH
Q 019402 164 AGFFLT-VSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGW-ETDNVEEIA 241 (341)
Q Consensus 164 ~~~~~~-~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~-~~~~~~~~~ 241 (341)
+++... .+.+.+..+++.+++.|+++++|+..... +.+...++++|++++|++|+..+++.... +.++..+++
T Consensus 133 ~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~-----~~~~~~~~~~dii~~n~~E~~~l~g~~~~~~~~~~~~~~ 207 (309)
T PRK13508 133 SGSLPAGLPVDYYAQLIELANQAGKPVVLDCSGAAL-----QAVLESPYKPTVIKPNIEELSQLLGKEVSEDLDELKEVL 207 (309)
T ss_pred eCCCCCCcCHHHHHHHHHHHHHCCCEEEEECCcHHH-----HHHHhccCCceEEccCHHHHHHHhCCCCCCCHHHHHHHH
Confidence 986542 24567888999999999999999975421 22334467899999999999999874321 112233444
Q ss_pred HHHhcCCCCCCCCccEEEEeeCCCCEEEEeCCeEEEEecccCCCCcccCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHH
Q 019402 242 LKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCY 321 (341)
Q Consensus 242 ~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~v~~~~~~~~~vvdttGAGDaf~a~~~~~l~~g~~~~~a~~~A~~ 321 (341)
+.+ ...|++.||||+|++|++++.+++.++++++++ +++|||||||+|+|||+++|++|+++++|+++|++
T Consensus 208 ~~~------~~~g~~~vvvT~G~~G~~~~~~~~~~~~~~~~v---~vvDttGAGDaF~Agfi~~l~~g~~~~~al~~a~a 278 (309)
T PRK13508 208 QQP------LFEGIEWIIVSLGADGAFAKHNDTFYKVDIPKI---EVVNPVGSGDSTVAGIASGLLHQEDDADLLKKANV 278 (309)
T ss_pred HHH------HHcCCCEEEEecCCCceEEEeCCceEEEeCCCc---cccCCcChhHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 444 345789999999999999998888888887655 88999999999999999999999999999999999
Q ss_pred HHhhhhhhccccCCC
Q 019402 322 AANVVIQRSGCTYPP 336 (341)
Q Consensus 322 ~aa~~v~~~g~~~p~ 336 (341)
+|++++++.+....+
T Consensus 279 ~aa~~~~~~~~~~~~ 293 (309)
T PRK13508 279 LGMLNAQEKQTGHVN 293 (309)
T ss_pred HHHHHhcCcCcCCCC
Confidence 999999999885443
No 38
>cd01164 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.
Probab=100.00 E-value=5.9e-40 Score=293.85 Aligned_cols=282 Identities=20% Similarity=0.199 Sum_probs=225.3
Q ss_pred eEEEecCceeeeEeecCHHHHHHcCCCCCceEEecCcccchHHHHhccCCceeecCchhHHHHHHHHHHhCCCCceEEEE
Q 019402 6 ILLGMGNPLLDISAVVDEEFLKKYDIKLNNAILAEDKHLPMYDELASKENVEYIAGGATQNSIKVAQWMLQIPGATSYIG 85 (341)
Q Consensus 6 ~i~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~~lg~~v~li~ 85 (341)
-..++|++++|++..++ ++| .++..+..+....+||.++|+|.+|++ + |.++.++|
T Consensus 2 ~~~~~~~~~~D~~~~~~--------------------~~~-~~~~~~~~~~~~~~GG~~~Nva~~la~-l--G~~v~~is 57 (289)
T cd01164 2 IYTVTLNPAIDLTIELD--------------------QLQ-PGEVNRVSSTRKDAGGKGINVARVLKD-L--GVEVTALG 57 (289)
T ss_pred EEEEecChHHeEEEEcC--------------------ccc-CCceeecccccccCCcchhHHHHHHHH-c--CCCeEEEE
Confidence 36899999999999998 555 457778888999999999999999998 4 59999999
Q ss_pred eecCCchhHHHHHHHHhcCCceeEeecCCCCcceEEEEEeC-CeeceeecccccccCCcccCCC--chhHhhhhcceEEE
Q 019402 86 CIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVVG-GERSLVANLSAANCYKSEHLKR--PEIWSIVEKAKYYY 162 (341)
Q Consensus 86 ~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~ 162 (341)
.+|+| +|+.+++.|++.||++.+++.. .+|+..++..+. |+++.+...+ ..++++++.. ....+.++++|++|
T Consensus 58 ~vG~D-~g~~i~~~l~~~gi~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (289)
T cd01164 58 FLGGF-TGDFFEALLKEEGIPDDFVEVA-GETRINVKIKEEDGTETEINEPG--PEISEEELEALLEKLKALLKKGDIVV 133 (289)
T ss_pred EccCc-hhHHHHHHHHHcCCCceEEECC-CCCEEEEEEEeCCCCEEEEeCCC--CCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 99998 8999999999999999998643 456777666663 5555544332 2344443322 01113467899999
Q ss_pred Eecccc-ccCHHHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhC-CCCcEEEcCHHHHHHHHhhcCCCCCCHHHH
Q 019402 163 IAGFFL-TVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKAL-PYMDYVFGNETEARTFAKVHGWETDNVEEI 240 (341)
Q Consensus 163 i~~~~~-~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l-~~~dil~~n~~E~~~l~~~~~~~~~~~~~~ 240 (341)
+++..+ ..+.+....+++.+++.+.++++|+.... +.+.+ +++|++++|++|+..+++....+.++..++
T Consensus 134 i~g~~~~~~~~~~~~~~~~~~~~~~~~i~~D~~~~~--------~~~~~~~~~dil~~n~~E~~~l~~~~~~~~~~~~~~ 205 (289)
T cd01164 134 LSGSLPPGVPADFYAELVRLAREKGARVILDTSGEA--------LLAALAAKPFLIKPNREELEELFGRPLGDEEDVIAA 205 (289)
T ss_pred EeCCCCCCcCHHHHHHHHHHHHHcCCeEEEECChHH--------HHHHHhcCCcEECCCHHHHHHHhCCCCCCHHHHHHH
Confidence 988643 23457888999999999999999996532 22333 799999999999999987554444556777
Q ss_pred HHHHhcCCCCCCCCccEEEEeeCCCCEEEEeCCeEEEEecccCCCCcccCCCCcchhhHHHHHHHHhcCCCHHHHHHHHH
Q 019402 241 ALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGC 320 (341)
Q Consensus 241 ~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~v~~~~~~~~~vvdttGAGDaf~a~~~~~l~~g~~~~~a~~~A~ 320 (341)
++.+ ...+++.++||+|++|++++.+++.++++++++ +++||+||||+|+|||++++++|+++++|+++|+
T Consensus 206 ~~~l------~~~g~~~vivt~G~~G~~~~~~~~~~~~~~~~~---~vvDttGAGDaf~a~~i~~l~~g~~~~~a~~~A~ 276 (289)
T cd01164 206 ARKL------IERGAENVLVSLGADGALLVTKDGVYRASPPKV---KVVSTVGAGDSMVAGFVAGLAQGLSLEEALRLAV 276 (289)
T ss_pred HHHH------HHcCCCEEEEecCCCCCEEEcCCcEEEecCCCc---cccCCCChHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 7777 456788999999999999998877778776654 7899999999999999999999999999999999
Q ss_pred HHHhhhhhhccc
Q 019402 321 YAANVVIQRSGC 332 (341)
Q Consensus 321 ~~aa~~v~~~g~ 332 (341)
++|+.+|++.|+
T Consensus 277 ~~Aa~~~~~~G~ 288 (289)
T cd01164 277 AAGSATAFSPGT 288 (289)
T ss_pred HHHHHHhcCccC
Confidence 999999999986
No 39
>TIGR03168 1-PFK hexose kinase, 1-phosphofructokinase family. This family consists largely of 1-phosphofructokinases, but also includes tagatose-6-kinases and 6-phosphofructokinases.
Probab=100.00 E-value=5e-40 Score=296.25 Aligned_cols=289 Identities=19% Similarity=0.206 Sum_probs=229.2
Q ss_pred EEecCceeeeEeecCHHHHHHcCCCCCceEEecCcccchHHHHhccCCceeecCchhHHHHHHHHHHhCCCCceEEEEee
Q 019402 8 LGMGNPLLDISAVVDEEFLKKYDIKLNNAILAEDKHLPMYDELASKENVEYIAGGATQNSIKVAQWMLQIPGATSYIGCI 87 (341)
Q Consensus 8 ~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~~lg~~v~li~~v 87 (341)
.|-=++.+|++..+| + +..++.....+...++||.+.|+|.++++ + |.++.++|.+
T Consensus 3 ~~~~~~~~D~~~~~~--------------------~-~~~~~~~~~~~~~~~~GG~~~N~a~~l~~-l--g~~~~~i~~v 58 (303)
T TIGR03168 3 TVTLNPAIDLTIEVD--------------------G-LTPGEVNRVAAVRKDAGGKGINVARVLAR-L--GAEVVATGFL 58 (303)
T ss_pred EEEcchHHeEEEEcC--------------------c-cccCceeecCcccccCCcchhhHHHHHHH-c--CCCeEEEEEe
Confidence 445577899999887 3 35567777788899999999999999998 4 5999999999
Q ss_pred cCCchhHHHHHHHHhcCCceeEeecCCCCcceEEEEEe-CCeeceeecccccccCCcccCCCc--hhHhhhhcceEEEEe
Q 019402 88 GKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVV-GGERSLVANLSAANCYKSEHLKRP--EIWSIVEKAKYYYIA 164 (341)
Q Consensus 88 G~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~i~ 164 (341)
|+| +|+.+++.|++.||++.+++.. ..|+.++...+ +|++..+...+ ..++++++... ...+.++++|++|++
T Consensus 59 G~D-~g~~i~~~l~~~gI~~~~i~~~-~~t~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~i~ 134 (303)
T TIGR03168 59 GGF-TGEFIEALLAEEGIKNDFVEVK-GETRINVKIKESSGEETELNEPG--PEISEEELEQLLEKLRELLASGDIVVIS 134 (303)
T ss_pred CCc-hhHHHHHHHHHcCCCceEEECC-CCCEEeEEEEeCCCCEEEEeCcC--CCCCHHHHHHHHHHHHHhccCCCEEEEe
Confidence 998 7999999999999999998754 35666666665 46655444433 23554444321 111347899999998
Q ss_pred cccc-ccCHHHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCCCCcEEEcCHHHHHHHHhhcCCCCCCHHHHHHH
Q 019402 165 GFFL-TVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGWETDNVEEIALK 243 (341)
Q Consensus 165 ~~~~-~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~ 243 (341)
++.. ..+.+.+..+++.+++.|+++++|+..... .+.+..++|++++|++|+..+++....+.++..++++.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~g~~v~~D~~~~~~-------~~~~~~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~~~ 207 (303)
T TIGR03168 135 GSLPPGVPPDFYAQLIAIARKRGAKVILDTSGEAL-------REALAAKPFLIKPNHEELEELFGRELKTEEEIIEAARE 207 (303)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCEEEEECCcHHH-------HHHHhcCCcEECCCHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 8642 456788999999999999999999975421 12233579999999999999988654333455667777
Q ss_pred HhcCCCCCCCCccEEEEeeCCCCEEEEeCCeEEEEecccCCCCcccCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 019402 244 ISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAA 323 (341)
Q Consensus 244 l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~v~~~~~~~~~vvdttGAGDaf~a~~~~~l~~g~~~~~a~~~A~~~a 323 (341)
+ ...+++.+|||+|++|++++++++.+++|++++ +++||+||||+|+|+|++++++|+++++|+++|+++|
T Consensus 208 l------~~~g~~~vviT~g~~G~~~~~~~~~~~~~~~~~---~~vDttGAGD~F~a~~~~~l~~g~~i~~a~~~A~~~a 278 (303)
T TIGR03168 208 L------LDRGAENVLVSLGADGALLVTKEGALKATPPKV---EVVNTVGAGDSMVAGFLAGLARGLSLEEALRFAVAAG 278 (303)
T ss_pred H------HHcCCCEEEEeecCCCcEEEeCCceEEeeCCcc---eeecCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 7 456788999999999999998888888887654 7899999999999999999999999999999999999
Q ss_pred hhhhhhccccCCCCCCC
Q 019402 324 NVVIQRSGCTYPPKPEF 340 (341)
Q Consensus 324 a~~v~~~g~~~p~~~e~ 340 (341)
+.+|++.|+..|+.+|+
T Consensus 279 a~~~~~~G~~~~~~~~~ 295 (303)
T TIGR03168 279 SAAAFSPGTGLPDPEDV 295 (303)
T ss_pred HHHhcCCCcCCCCHHHH
Confidence 99999999987877654
No 40
>PRK09813 fructoselysine 6-kinase; Provisional
Probab=100.00 E-value=7.3e-40 Score=288.68 Aligned_cols=257 Identities=18% Similarity=0.242 Sum_probs=207.4
Q ss_pred eEEEecCceeeeEeecCHHHHHHcCCCCCceEEecCcccchHHHHhccCCceeecCchhHHHHHHHHHHhCCCCceEEEE
Q 019402 6 ILLGMGNPLLDISAVVDEEFLKKYDIKLNNAILAEDKHLPMYDELASKENVEYIAGGATQNSIKVAQWMLQIPGATSYIG 85 (341)
Q Consensus 6 ~i~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~~lg~~v~li~ 85 (341)
+|+++|++++|++.+.+ +.++||.+.|+|.+|++ + |.++.++|
T Consensus 2 ~v~~iG~~~~D~~~~~~----------------------------------~~~~GG~~~NvA~~l~~-l--G~~~~~is 44 (260)
T PRK09813 2 KLATIGDNCVDIYPQLG----------------------------------KAFSGGNAVNVAVYCTR-Y--GIQPGCIT 44 (260)
T ss_pred eEEEeccceeeecccCC----------------------------------ccccCccHHHHHHHHHH-c--CCcceEEE
Confidence 79999999999997443 26999999999999998 4 59999999
Q ss_pred eecCCchhHHHHHHHHhcCCceeEeecCCCCcceEEEEEeCCeeceeecc-cccccCCcccCCCchhHhhhhcceEEEEe
Q 019402 86 CIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVVGGERSLVANL-SAANCYKSEHLKRPEIWSIVEKAKYYYIA 164 (341)
Q Consensus 86 ~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~i~ 164 (341)
.+|+|.+|+++++.|++.||+++++...+.+|+.+++.+++++|++..+. +....+..+. ...+.+.++|+++++
T Consensus 45 ~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~~t~~~~~~~~~~~r~~~~~~~~~~~~~~~~~----~~~~~l~~~~~v~~~ 120 (260)
T PRK09813 45 WVGDDDYGTKLKQDLARMGVDISHVHTKHGVTAQTQVELHDNDRVFGDYTEGVMADFALSE----EDYAWLAQYDIVHAA 120 (260)
T ss_pred EecCcHHHHHHHHHHHHcCCcchheeeecCCCceEEEEEeCCcEEeeccCCCcccccccCH----HHHHHHHhCCEEEEe
Confidence 99999999999999999999999986545678888777777888765443 3223332221 123567899999996
Q ss_pred ccccccCHHHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCCCCcEEEcCHHHHHHHHhhcCCCCCCHHHHHHHH
Q 019402 165 GFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGWETDNVEEIALKI 244 (341)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l 244 (341)
.+. ...++++.++++++++++|+.... ..+.+.++++++|+++.|+++. ..+.+++++.+
T Consensus 121 ~~~------~~~~~~~~~~~~~~~v~~D~~~~~----~~~~~~~~~~~~d~~~~~~~~~----------~~~~~~~~~~~ 180 (260)
T PRK09813 121 IWG------HAEDAFPQLHAAGKLTAFDFSDKW----DSPLWQTLVPHLDYAFASAPQE----------DEFLRLKMKAI 180 (260)
T ss_pred ccc------hHHHHHHHHHHcCCeEEEEcCCCc----cHHHHHHhCCceeEEEecCCcc----------hHHHHHHHHHH
Confidence 421 235677888899999999996532 1234567899999999886531 12345677777
Q ss_pred hcCCCCCCCCccEEEEeeCCCCEEEEeCCeEEEEecccCCCCcccCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 019402 245 SQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAAN 324 (341)
Q Consensus 245 ~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~v~~~~~~~~~vvdttGAGDaf~a~~~~~l~~g~~~~~a~~~A~~~aa 324 (341)
...+++.+|||+|++|++++++++.+++|++++ +++|||||||+|+|||++++.+|+++++|+++|+++|+
T Consensus 181 ------~~~g~~~viit~G~~Ga~~~~~~~~~~~~~~~~---~~vDttGAGDaF~ag~i~~~~~g~~~~~al~~a~~~aa 251 (260)
T PRK09813 181 ------VARGAGVVIVTLGENGSIAWDGAQFWRQAPEPV---TVVDTMGAGDSFIAGFLCGWLAGMTLPQAMAQGTACAA 251 (260)
T ss_pred ------HHcCCCEEEEEECCCceEEEECCEEEecCCccc---CCCCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 456788999999999999999988888887765 78999999999999999999999999999999999999
Q ss_pred hhhhhccc
Q 019402 325 VVIQRSGC 332 (341)
Q Consensus 325 ~~v~~~g~ 332 (341)
+++++.|+
T Consensus 252 ~~~~~~G~ 259 (260)
T PRK09813 252 KTIQYHGA 259 (260)
T ss_pred HHHhccCC
Confidence 99999986
No 41
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-39 Score=282.59 Aligned_cols=290 Identities=19% Similarity=0.185 Sum_probs=246.6
Q ss_pred eEEEecCceeeeEeecCHHHHHHcCCCCCceEEecCcccchHHHHhccCCceeecCchhHHHHHHHHHHhCCCCceEEEE
Q 019402 6 ILLGMGNPLLDISAVVDEEFLKKYDIKLNNAILAEDKHLPMYDELASKENVEYIAGGATQNSIKVAQWMLQIPGATSYIG 85 (341)
Q Consensus 6 ~i~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~~lg~~v~li~ 85 (341)
-+++.=++++|.+..+++ -+.+++++.......+||+|.|+|.+|++ + |.++..+|
T Consensus 2 I~TvTLNPaiD~~~~l~~---------------------l~~g~vNr~~~~~~~aGGKGINVa~vL~~-l--G~~~~a~G 57 (310)
T COG1105 2 IYTVTLNPALDYTVFLDE---------------------LELGEVNRVRAVTKTAGGKGINVARVLKD-L--GIPVTALG 57 (310)
T ss_pred eEEEecChhHhheeeccc---------------------ccccceeeeccceecCCCCceeHHHHHHH-c--CCCceEEE
Confidence 467788999999999973 45677888899999999999999999997 4 49999999
Q ss_pred eecCCchhHHHHHHHHhcCCceeEeecCCCCcceEEEEEeCCeeceeecccccccCCcccCCC-ch-hHhhhhcceEEEE
Q 019402 86 CIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVVGGERSLVANLSAANCYKSEHLKR-PE-IWSIVEKAKYYYI 163 (341)
Q Consensus 86 ~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~v~i 163 (341)
.+|.+ .|+++.+.|++.||...++++.+ +|+.++-+.++.+........+...++++++.. .+ ....+.+.|+|++
T Consensus 58 flGg~-tg~~~~~~l~~~gi~~~fv~v~g-~TRinvki~~~~~~~~Tein~~Gp~is~~~~~~~l~~~~~~l~~~d~Vvl 135 (310)
T COG1105 58 FLGGF-TGEFFVALLKDEGIPDAFVEVKG-DTRINVKILDEEDGEETEINFPGPEISEAELEQFLEQLKALLESDDIVVL 135 (310)
T ss_pred ecCCc-cHHHHHHHHHhcCCCceEEEccC-CCeeeEEEEecCCCcEEEecCCCCCCCHHHHHHHHHHHHHhcccCCEEEE
Confidence 99996 89999999999999999998655 699998888754322223334446777777665 22 2234788999999
Q ss_pred ecccc-ccCHHHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCC-CCcEEEcCHHHHHHHHhhcCCCCCCHHHHH
Q 019402 164 AGFFL-TVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALP-YMDYVFGNETEARTFAKVHGWETDNVEEIA 241 (341)
Q Consensus 164 ~~~~~-~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~-~~dil~~n~~E~~~l~~~~~~~~~~~~~~~ 241 (341)
+|+.+ .++.+.+.++++.+++.+.++++|.++.. +.+.++ ..++++||.+|++.+++....+..+..+++
T Consensus 136 sGSlP~g~~~d~y~~li~~~~~~g~~vilD~Sg~~--------L~~~L~~~P~lIKPN~~EL~~~~g~~~~~~~d~i~~a 207 (310)
T COG1105 136 SGSLPPGVPPDAYAELIRILRQQGAKVILDTSGEA--------LLAALEAKPWLIKPNREELEALFGRELTTLEDVIKAA 207 (310)
T ss_pred eCCCCCCCCHHHHHHHHHHHHhcCCeEEEECChHH--------HHHHHccCCcEEecCHHHHHHHhCCCCCChHHHHHHH
Confidence 99764 67889999999999999999999998765 445554 488889999999999998877777888888
Q ss_pred HHHhcCCCCCCCCccEEEEeeCCCCEEEEeCCeEEEEecccCCCCcccCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHH
Q 019402 242 LKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCY 321 (341)
Q Consensus 242 ~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~v~~~~~~~~~vvdttGAGDaf~a~~~~~l~~g~~~~~a~~~A~~ 321 (341)
+.+ +..|+..|||++|++|+++.+++..|++.+|+ +++++|+||||++.|||++++++++++++++++|++
T Consensus 208 ~~l------~~~g~~~ViVSlG~~Gal~~~~~~~~~a~~p~---~~vvstVGAGDs~VAGf~~~~~~~~~~e~~l~~avA 278 (310)
T COG1105 208 REL------LAEGIENVIVSLGADGALLVTAEGVYFASPPK---VQVVSTVGAGDSMVAGFLAGLLKGKSLEEALRFAVA 278 (310)
T ss_pred HHH------HHCCCCEEEEEecCcccEEEccCCeEEEeCCC---cceecCcCchHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 887 77899999999999999999999999998665 499999999999999999999999999999999999
Q ss_pred HHhhhhhhccccCCCCC
Q 019402 322 AANVVIQRSGCTYPPKP 338 (341)
Q Consensus 322 ~aa~~v~~~g~~~p~~~ 338 (341)
+|+.++++.+..+|+.+
T Consensus 279 ~g~a~~~~~~~~~~~~~ 295 (310)
T COG1105 279 CGAAAASQKGTGIPDLD 295 (310)
T ss_pred HHHHHhhcCCCCCCCHH
Confidence 99999999999887765
No 42
>TIGR01231 lacC tagatose-6-phosphate kinase. This enzyme is part of the tagatose-6-phosphate pathway of lactose degradation.
Probab=100.00 E-value=1.7e-39 Score=293.35 Aligned_cols=288 Identities=15% Similarity=0.179 Sum_probs=223.0
Q ss_pred EEEecCceeeeEeecCHHHHHHcCCCCCceEEecCcccchHHHHhccCCceeecCchhHHHHHHHHHHhCCCCceEEEEe
Q 019402 7 LLGMGNPLLDISAVVDEEFLKKYDIKLNNAILAEDKHLPMYDELASKENVEYIAGGATQNSIKVAQWMLQIPGATSYIGC 86 (341)
Q Consensus 7 i~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~~lg~~v~li~~ 86 (341)
+++.=++++|.+..++ ++|..+ .....+...++||++.|+|.+|++ +|.++.++|.
T Consensus 2 ~~~~~~p~~d~~~~~~--------------------~~~~~~-~~~~~~~~~~~GG~~~NvA~~la~---LG~~v~~i~~ 57 (309)
T TIGR01231 2 LTVTLNPSVDISYPLT--------------------ALKLDT-VNRVQEVSKTAGGKGLNVTRVLAQ---VGDPVLASGF 57 (309)
T ss_pred EEEEcchHHeEEEEcC--------------------CeeeCc-eEeeceeeecCCccHHHHHHHHHH---cCCCeEEEEE
Confidence 4567789999988886 455555 446678889999999999999998 4599999999
Q ss_pred ecCCchhHHHHHHHHhcCCceeEeecCCCCcceEEEEEeCCeeceeecccccccCCcccCCC--chhHhhhhcceEEEEe
Q 019402 87 IGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVVGGERSLVANLSAANCYKSEHLKR--PEIWSIVEKAKYYYIA 164 (341)
Q Consensus 87 vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~i~ 164 (341)
+|+ .+|+++++.|++.||+++++... .+|+.++.++++|+++++...++. +..+.... ....+.++++|++|++
T Consensus 58 vG~-~~G~~i~~~l~~~GV~~~~~~~~-~~t~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~ 133 (309)
T TIGR01231 58 LGG-KLGEFIEKELDHSDIKHAFYKIS-GETRNCIAILHEGQQTEILEQGPE--ISNQEAAGFLKHFEQLLEKVEVVAIS 133 (309)
T ss_pred ecC-hhHHHHHHHHHHcCCceeEEECC-CCCEEeEEEEeCCCEEEEeCCCCC--CCHHHHHHHHHHHHHHhccCCEEEEE
Confidence 997 59999999999999999988643 357677666667888876655532 22211100 1123457899999999
Q ss_pred cccc-ccCHHHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCCCCcEEEcCHHHHHHHHhhcCC-CCCCHHHHHH
Q 019402 165 GFFL-TVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGW-ETDNVEEIAL 242 (341)
Q Consensus 165 ~~~~-~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~-~~~~~~~~~~ 242 (341)
++.. ..+...+..+++.+++.|+++++|+..... ..+.+.++++|++++|.+|++.+++.... +.++..+.++
T Consensus 134 g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~-----~~~~~~~~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~~~ 208 (309)
T TIGR01231 134 GSLPKGLPQDYYAQIIERCQNKGVPVVLDCSGATL-----QTVLENPAKPTVIKPNIEELSQLLNQELTEDLESLKQALS 208 (309)
T ss_pred CCCCCCcCHHHHHHHHHHHHhCCCeEEEECChHHH-----HHHHhccCCCeEEcCCHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 8753 345678899999999999999999975431 22445567899999999999999874221 1122333444
Q ss_pred HHhcCCCCCCCCccEEEEeeCCCCEEEEeCCeEEEEecccCCCCcccCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 019402 243 KISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYA 322 (341)
Q Consensus 243 ~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~v~~~~~~~~~vvdttGAGDaf~a~~~~~l~~g~~~~~a~~~A~~~ 322 (341)
.+ ...|++.+++|+|++|++++.+++.++++++++ +++|||||||+|+|||+++|++|+++++|+++|+++
T Consensus 209 ~~------~~~g~~~vivT~G~~G~~~~~~~~~~~~~~~~v---~vvDttGAGDaF~agfl~~l~~g~~~~~a~~~a~a~ 279 (309)
T TIGR01231 209 QP------LFSGIEWIIVSLGAQGAFAKHGHTFYKVNIPTI---SVVNPVGSGDSTVAGITSALLNHESDHDLLKKANTL 279 (309)
T ss_pred HH------HHcCCCEEEEccCCCceEEEeCCeeEEeeCCcc---CcCCCcchHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 44 345788999999999999998888888887655 789999999999999999999999999999999999
Q ss_pred HhhhhhhccccCCC
Q 019402 323 ANVVIQRSGCTYPP 336 (341)
Q Consensus 323 aa~~v~~~g~~~p~ 336 (341)
|++++++.+..-.+
T Consensus 280 aa~~~~~~~~~~~~ 293 (309)
T TIGR01231 280 GMLNAQEAQTGHVN 293 (309)
T ss_pred HHHHhcCcccCCCC
Confidence 99999988875443
No 43
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=100.00 E-value=1.5e-37 Score=296.17 Aligned_cols=296 Identities=15% Similarity=0.147 Sum_probs=218.9
Q ss_pred cceEEEecCceeeeEeecCHHHHHHcCCCCCceEEecCcccchHHHHhccCCceeecCchhHHHHHHHHHHhCCCCceEE
Q 019402 4 EGILLGMGNPLLDISAVVDEEFLKKYDIKLNNAILAEDKHLPMYDELASKENVEYIAGGATQNSIKVAQWMLQIPGATSY 83 (341)
Q Consensus 4 ~~~i~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~~lg~~v~l 83 (341)
.++|+|+|.+++|++...+.. .+++ +.+............+|| ++|+|.++++ ||.++.+
T Consensus 10 ~~~ilviG~~~lD~~~~~~~~------------~~~~----~~~~~~~~~~~~~~~~GG-a~NvA~~la~---LG~~v~~ 69 (473)
T PRK11316 10 RAGVLVVGDVMLDRYWYGPTS------------RISP----EAPVPVVKVNQIEERPGG-AANVAMNIAS---LGAQARL 69 (473)
T ss_pred CCcEEEECccEEeeeeecccc------------eeCC----CCCCCEEEeeeEEecCcH-HHHHHHHHHH---cCCcEEE
Confidence 457999999999999875310 0000 122223555677888999 7999999998 4599999
Q ss_pred EEeecCCchhHHHHHHHHhcCCceeEeecCCCCcceEEEEEeCCeeceeeccc-ccccCCcccCCCchhHhhhhcceEEE
Q 019402 84 IGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVVGGERSLVANLS-AANCYKSEHLKRPEIWSIVEKAKYYY 162 (341)
Q Consensus 84 i~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~ 162 (341)
+|.+|+|.+|+.+++.|++.||+++++...+.+|+.++++++.+......... ....++.+.+.. .....++++++++
T Consensus 70 i~~vG~D~~g~~i~~~L~~~gI~~~~v~~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~l~~~~~v~ 148 (473)
T PRK11316 70 VGLTGIDEAARALSKLLAAVGVKCDFVSVPTHPTITKLRVLSRNQQLIRLDFEEGFEGVDPQPLLE-RIEQALPSIGALV 148 (473)
T ss_pred EEEEcCCHHHHHHHHHHHHcCCceeEEEcCCCCCCeeEEEEeCCceEEecccccCCCchhHHHHHH-HHHHHhccCCEEE
Confidence 99999999999999999999999998866667788888877643332211111 111112222111 1235588999999
Q ss_pred EeccccccCHHHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCCCCcEEEcCHHHHHHHHhhcCCCCCCHHHHHH
Q 019402 163 IAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGWETDNVEEIAL 242 (341)
Q Consensus 163 i~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~ 242 (341)
++++.... .+.+..+++.+++.+.++++|+.... ...++.+|++++|++|++.+++.. .+.++..+.++
T Consensus 149 is~~~~~~-~~~~~~~~~~~k~~g~~vv~Dp~~~~---------~~~~~~~dil~pN~~Ea~~l~g~~-~~~~~~~~~~~ 217 (473)
T PRK11316 149 LSDYAKGA-LASVQAMIQLARKAGVPVLIDPKGTD---------FERYRGATLLTPNLSEFEAVVGKC-KDEAELVEKGM 217 (473)
T ss_pred EecCCccc-hhHHHHHHHHHHhcCCeEEEeCCCCC---------ccccCCCeEECcCHHHHHHHhCCC-CCHHHHHHHHH
Confidence 98654322 35688899999999999999996432 134678999999999999998731 11222333444
Q ss_pred HHhcCCCCCCCCccEEEEeeCCCCEEEEeCCe-EEEEecccCCCCcccCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHH
Q 019402 243 KISQWPKASGTHKRITVITQGADPVVVAEDGK-VKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCY 321 (341)
Q Consensus 243 ~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~-~~~v~~~~~~~~~vvdttGAGDaf~a~~~~~l~~g~~~~~a~~~A~~ 321 (341)
.+. ...|++.++||+|++|++++.++. .+++|++++ +++||+||||+|.|||+++|++|+++++|+++|++
T Consensus 218 ~l~-----~~~g~~~vvVT~G~~G~~~~~~~~~~~~~~~~~v---~vvDttGAGDaF~aa~~~~l~~g~~~~~al~~A~a 289 (473)
T PRK11316 218 KLI-----ADYDLSALLVTRSEQGMTLLQPGKAPLHLPTQAR---EVYDVTGAGDTVISVLAAALAAGNSLEEACALANA 289 (473)
T ss_pred HHH-----HhcCCCEEEEEecCCCcEEEecCCceEEecCcCC---CCCCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 442 345788999999999998887665 477776654 88999999999999999999999999999999999
Q ss_pred HHhhhhhhccccCCCCCC
Q 019402 322 AANVVIQRSGCTYPPKPE 339 (341)
Q Consensus 322 ~aa~~v~~~g~~~p~~~e 339 (341)
+|++++++.|+..++.++
T Consensus 290 ~Aa~~v~~~G~~~~~~~~ 307 (473)
T PRK11316 290 AAGVVVGKLGTSTVSPIE 307 (473)
T ss_pred HHHhhcccCCCccCCHHH
Confidence 999999999997665554
No 44
>cd01946 ribokinase_group_C Ribokinase-like subgroup C. Found only in bacteria, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=3.1e-36 Score=268.07 Aligned_cols=266 Identities=22% Similarity=0.279 Sum_probs=202.4
Q ss_pred eEEEecCceeeeEeecCHHHHHHcCCCCCceEEecCcccchHHHHhccCCceeecCchhHHHHHHHHHHhCCCCceEEEE
Q 019402 6 ILLGMGNPLLDISAVVDEEFLKKYDIKLNNAILAEDKHLPMYDELASKENVEYIAGGATQNSIKVAQWMLQIPGATSYIG 85 (341)
Q Consensus 6 ~i~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~~lg~~v~li~ 85 (341)
.|+++|++++|++.... ......+||++.|+|.++++| | ++.++|
T Consensus 1 ~v~~~G~~~~D~~~~~~-------------------------------~~~~~~~GG~a~N~a~~la~l---g-~v~~i~ 45 (277)
T cd01946 1 SLLVVGSVAFDAIETPF-------------------------------GKVDKALGGSATYFSLSASYF---T-DVRLVG 45 (277)
T ss_pred CeEEEEEeeeeeecCCC-------------------------------ceeeeccCchHHHHHHHHHHh---c-cceeEE
Confidence 38999999999994221 113467999999999999983 3 599999
Q ss_pred eecCCchhHHHHHHHHhcCCceeEeec-CCCCcceEEEEE--e-CCeeceeecccccccCCcccCCCchhHhhhhcceEE
Q 019402 86 CIGKDKFGEEMKKNSTAAGVNVKYYED-ESAPTGTCAVCV--V-GGERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYY 161 (341)
Q Consensus 86 ~vG~D~~g~~i~~~l~~~gi~~~~~~~-~~~~t~~~~~~~--~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 161 (341)
.+|+| +|+.+++.|+++||++++++. .+.+|....... + ++++......+....+.+. ..+.+.+++++
T Consensus 46 ~vG~D-~g~~~~~~l~~~gi~~~~v~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~v 118 (277)
T cd01946 46 VVGED-FPEEDYKLLNSHNIVTLGLLSKEDGKTFHWAGRYHYDLNEADTLDTDLNVFADFDPQ------LPEHYKDSEFV 118 (277)
T ss_pred eccCc-ChHHHHHHHHhccCcceeEEEecCCCeEEEeeEehhhcccccchhhhhhHHhhcCCC------ChHHhhcCCEE
Confidence 99999 899999999999999999854 434442111010 0 1222222111111122111 12457889999
Q ss_pred EEeccccccCHHHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCCCCcEEEcCHHHHHHHHhhcCCCCCCHHHHH
Q 019402 162 YIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGWETDNVEEIA 241 (341)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~ 241 (341)
|+++ ++++....+++.+++. .++++|+. ..|.....+.+.++++++|++++|++|++.+++ .++.++++
T Consensus 119 ~~~~----~~~~~~~~~~~~~~~~-~~v~~D~~-~~~~~~~~~~~~~~l~~~d~~~~n~~E~~~l~g-----~~~~~~~~ 187 (277)
T cd01946 119 FLGN----IAPELQREVLEQVKDP-KLVVMDTM-NFWISIKPEKLKKVLAKVDVVIINDGEARQLTG-----AANLVKAA 187 (277)
T ss_pred EECC----CCHHHHHHHHHHHHhC-CEEEEccH-HHhhhhhHHHHHHHhccCCEEeCCHHHHHHHhC-----CchHHHHH
Confidence 9975 4567788888888877 78999984 345433445678899999999999999999976 34677888
Q ss_pred HHHhcCCCCCCCCccEEEEeeCCCCEEEEeCCeEEEEecccCCCCcccCCCCcchhhHHHHHHHHhcCC-----CHHHHH
Q 019402 242 LKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEK-----PVEDCV 316 (341)
Q Consensus 242 ~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~v~~~~~~~~~vvdttGAGDaf~a~~~~~l~~g~-----~~~~a~ 316 (341)
+.+ ...+++.||+|+|.+|++++++++.+++|+++++ +++|||||||+|.|||+++|++++ ++++|+
T Consensus 188 ~~l------~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~--~~vDttGAGDaF~Agfl~~l~~~~~~~~~~~~~a~ 259 (277)
T cd01946 188 RLI------LAMGPKALIIKRGEYGALLFTDDGYFAAPAYPLE--SVFDPTGAGDTFAGGFIGYLASQKDTSEANMRRAI 259 (277)
T ss_pred HHH------HHcCCCEEEEecCCCcEEEEECCceEEcCCcccC--ccCCCCCchHHHHHHHHHHHHhCCCcchhhHHHHH
Confidence 888 5678899999999999999988888888876552 488999999999999999999884 699999
Q ss_pred HHHHHHHhhhhhhccc
Q 019402 317 RTGCYAANVVIQRSGC 332 (341)
Q Consensus 317 ~~A~~~aa~~v~~~g~ 332 (341)
++|+++|+++|++.|+
T Consensus 260 ~~a~~~aa~~~~~~G~ 275 (277)
T cd01946 260 IYGSAMASFCVEDFGT 275 (277)
T ss_pred HHhHHHHhhhhhhcCC
Confidence 9999999999999986
No 45
>PLN02630 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=4.3e-36 Score=271.02 Aligned_cols=255 Identities=20% Similarity=0.216 Sum_probs=205.1
Q ss_pred CcceEEEecCceeeeEeecCHHHHHHcCCCCCceEEecCcccchHHHHhccCCceeecCchhHHHHHHHHHHhCCCCceE
Q 019402 3 YEGILLGMGNPLLDISAVVDEEFLKKYDIKLNNAILAEDKHLPMYDELASKENVEYIAGGATQNSIKVAQWMLQIPGATS 82 (341)
Q Consensus 3 ~~~~i~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~~lg~~v~ 82 (341)
+.++|+++|++++|++...+ ......+||+++|+|.++++ ||.++.
T Consensus 10 ~~~~vlvvG~~~~D~i~~~g-------------------------------~~~~~~~GG~a~N~A~alar---LG~~~~ 55 (335)
T PLN02630 10 PQRRVLIVGNYCHDVLIQNG-------------------------------SVTAESLGGAASFISNVLDA---LSVECE 55 (335)
T ss_pred CCCCEEEEeeeeeeEEEeCC-------------------------------cEEEEecCcHHHHHHHHHHH---cCCceE
Confidence 46799999999999998654 11457899999999999998 459999
Q ss_pred EEEeecCCchhHHHHHHHHhcCCceeEeecCCCCcceEEEEEeCC------eeceeecccccccCCcccCCCchhHhhhh
Q 019402 83 YIGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVVGG------ERSLVANLSAANCYKSEHLKRPEIWSIVE 156 (341)
Q Consensus 83 li~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~g------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (341)
++|.+|+|.. .+++...+..++.+|+.++.++++| +++++...+++..+++++++. ..+.
T Consensus 56 lis~VG~D~~----------~~v~~~~~~~~~~~T~~~~~~~~~g~~~~~~e~~i~~~~ga~~~l~~~di~~----~~~~ 121 (335)
T PLN02630 56 LVSKVGPDFL----------YQVSHPPIVIPDSKTTEFHADFDQGIDGNGHEDRVLKRVCACDPIEPSDIPD----MRYE 121 (335)
T ss_pred EEEEecCCcc----------ccccccceecCCCCceEEEEEEcCCcccCCCCeEEEEeccccCCCChHHCCH----HHhc
Confidence 9999999952 3677655544666788888877643 778888889999999998874 2467
Q ss_pred cceEEEEeccccccCHHHHHHHHHHHHh-----cCCeEEEeCCcHH---HHhhhhHHHHhhCCCCcEEEcCHHHHHHHHh
Q 019402 157 KAKYYYIAGFFLTVSPESIQMVAEHAAA-----KNKVFMMNLSAPF---ICEFFREPQEKALPYMDYVFGNETEARTFAK 228 (341)
Q Consensus 157 ~~~~v~i~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~d~~~~~---~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~ 228 (341)
.++++++.+ .++++....+++.++. +++.+++|+.... |. .....+.++++++|++++|++|+..+
T Consensus 122 ~~~~~~l~~---ei~~e~~~~~~~~a~~v~~D~~g~~~~~Dp~~~~~~~~~-~~~~~~~~~L~~iDil~~ne~Ea~~l-- 195 (335)
T PLN02630 122 FGMAVGVAG---EILPETLERMVEICDVVVVDIQALIRVFDPVDGTVKLVK-LEETGFYDMLPRIGFLKASSEEALFI-- 195 (335)
T ss_pred ccceeeecC---CCcHHHHHHHHHHhhhheeccCceEEecCCcccccccch-hhHHHHHHHHHhCCEEEecHHHHhhc--
Confidence 788888865 4567889999999988 7888999986521 11 01123668899999999999999875
Q ss_pred hcCCCCCCHHHHHHHHhcCCCCCCCCccEEEEeeCCCCEEEEeCCeEEEEecccCCCCcccCCCCcchhhHHHHHHHHhc
Q 019402 229 VHGWETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQ 308 (341)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~v~~~~~~~~~vvdttGAGDaf~a~~~~~l~~ 308 (341)
+.+++. . ...+|||+|++|++++++++.+++|++++ +++|||||||+|+|||++++++
T Consensus 196 -------~~~~~~----------~--~~~vvvt~G~~G~~~~~~~~~~~~~~~~v---~~vDttGAGDaF~agfi~~l~~ 253 (335)
T PLN02630 196 -------DVEEVR----------Q--KCCVIVTNGKKGCRIYWKDGEMRVPPFPA---IQVDPTGAGDSFLGGFVAGLVQ 253 (335)
T ss_pred -------CHHHHc----------c--CCEEEEEECCCceEEEECCeeEEeCCCCC---CCCCCCChHHHHHHHHHHHHHc
Confidence 122221 1 13799999999999998888888887755 7899999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhhhhhcccc
Q 019402 309 EKPVEDCVRTGCYAANVVIQRSGCT 333 (341)
Q Consensus 309 g~~~~~a~~~A~~~aa~~v~~~g~~ 333 (341)
|+++++|+++|+++|++++++.|+.
T Consensus 254 g~~~~~a~~~A~a~aa~~v~~~G~~ 278 (335)
T PLN02630 254 GLAVPDAALLGNYFGSLAVEQVGIP 278 (335)
T ss_pred CCCHHHHHHHHHHHHHHHhCcCCCC
Confidence 9999999999999999999999963
No 46
>cd01937 ribokinase_group_D Ribokinase-like subgroup D. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=2.4e-35 Score=259.14 Aligned_cols=251 Identities=16% Similarity=0.127 Sum_probs=193.8
Q ss_pred eEEEecCceeeeEeecCHHHHHHcCCCCCceEEecCcccchHHHHhccCCceeecCchhHHHHHHHHHHhCCCCceEEEE
Q 019402 6 ILLGMGNPLLDISAVVDEEFLKKYDIKLNNAILAEDKHLPMYDELASKENVEYIAGGATQNSIKVAQWMLQIPGATSYIG 85 (341)
Q Consensus 6 ~i~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~~lg~~v~li~ 85 (341)
||+++|++++|++...+ +....+||++.|+|.++++ + |.++.++|
T Consensus 1 ~il~iG~~~iD~~~~~~--------------------------------~~~~~~GG~~~Nva~~la~-l--G~~~~~i~ 45 (254)
T cd01937 1 KIVIIGHVTIDEIVTNG--------------------------------SGVVKPGGPATYASLTLSR-L--GLTVKLVT 45 (254)
T ss_pred CeEEEcceeEEEEecCC--------------------------------ceEEecCchhhhHHHHHHH-h--CCCeEEEE
Confidence 68999999999997432 3468999999999999998 4 59999999
Q ss_pred eecCCchhHHHHHHHHhcCCceeEeecCCCCcceEEEEEe-CCeeceeecccccccCCcccCCCchhHhhhhcceEEEEe
Q 019402 86 CIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVV-GGERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYIA 164 (341)
Q Consensus 86 ~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~ 164 (341)
.+|+|.+|+ ++.|++.||++..+. ...|+.+++.++ +|+++++...+++...... . ..+.++|++|++
T Consensus 46 ~vG~D~~g~--~~~l~~~gv~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~~~~~~~~~~ 114 (254)
T cd01937 46 KVGRDYPDK--WSDLFDNGIEVISLL--STETTTFELNYTNEGRTRTLLAKCAAIPDTES---P----LSTITAEIVILG 114 (254)
T ss_pred eeCCCchHH--HHHHHHCCcEEEEec--CCCeEEEEEEecCCCCeeeeeccccCCccccc---c----cccCcccEEEEC
Confidence 999999998 688999999976543 335666666665 5677766555443322211 1 346789999997
Q ss_pred ccccccCHHHHHHHHHHHHhcCCeEEEeCCcHHHHh--hhhHHHHhhCCCCcEEEcCHHHHHHHHhhcCCCCCCHHHHHH
Q 019402 165 GFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICE--FFREPQEKALPYMDYVFGNETEARTFAKVHGWETDNVEEIAL 242 (341)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~--~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~ 242 (341)
+. +++....+.+.+ .++++|+... +.. .....+.++++++|++++|++|++.+ .+.+++++
T Consensus 115 ~~----~~~~~~~~~~~~----~~v~~D~~~~-~~~~~~~~~~~~~~l~~~di~~~n~~E~~~~--------~~~~~~~~ 177 (254)
T cd01937 115 PV----PEEISPSLFRKF----AFISLDAQGF-LRRANQEKLIKCVILKLHDVLKLSRVEAEVI--------STPTELAR 177 (254)
T ss_pred CC----cchhcHHHHhhh----hheeEccccc-eeeccccchHHHhhcccCcEEEEcHHHHhhc--------CCHHHHHH
Confidence 53 334444443332 6788898643 211 12223568899999999999999872 35677888
Q ss_pred HHhcCCCCCCCCccEEEEeeCCCCEEEEeCCeEEEEecccCCCCcccCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 019402 243 KISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYA 322 (341)
Q Consensus 243 ~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~v~~~~~~~~~vvdttGAGDaf~a~~~~~l~~g~~~~~a~~~A~~~ 322 (341)
.+ ...+++.+|||.|++|++++++++.+++++++. +++|||||||+|+|+|++++++|+++++|+++|+++
T Consensus 178 ~l------~~~g~~~vvvt~g~~g~~~~~~~~~~~~~~~~~---~~vdt~GAGD~f~a~~~~~l~~g~~~~~a~~~a~~~ 248 (254)
T cd01937 178 LI------KETGVKEIIVTDGEEGGYIFDGNGKYTIPASKK---DVVDPTGAGDVFLAAFLYSRLSGKDIKEAAEFAAAA 248 (254)
T ss_pred HH------HHcCCCEEEEeeCCcceEEEECCccEEccccCc---eeccCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 87 566789999999999999998888888877654 789999999999999999999999999999999999
Q ss_pred Hhhhhh
Q 019402 323 ANVVIQ 328 (341)
Q Consensus 323 aa~~v~ 328 (341)
|+.+|+
T Consensus 249 aa~~i~ 254 (254)
T cd01937 249 AAKFIE 254 (254)
T ss_pred HHHHhC
Confidence 999874
No 47
>KOG2947 consensus Carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.3e-32 Score=222.30 Aligned_cols=290 Identities=17% Similarity=0.232 Sum_probs=231.2
Q ss_pred CCCcceEEEecCceeeeEeecCHHHHHHcCCCCCceEEecCcccchHHHHhccCCceeecCchhHHHHHHHHHHhCCCCc
Q 019402 1 MAYEGILLGMGNPLLDISAVVDEEFLKKYDIKLNNAILAEDKHLPMYDELASKENVEYIAGGATQNSIKVAQWMLQIPGA 80 (341)
Q Consensus 1 m~~~~~i~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~~lg~~ 80 (341)
|-.++.|+++|...+|++..+| +.|.++...+..+...+-||.+.|++.+++. || .+
T Consensus 1 m~~~k~VLcVG~~~lD~iTivd--------------------~~~fe~~~~r~~~g~wqRgG~asNvcTvlrl-LG--~~ 57 (308)
T KOG2947|consen 1 MEEPKQVLCVGCTVLDVITIVD--------------------KYPFEDSEIRCLSGRWQRGGNASNVCTVLRL-LG--AP 57 (308)
T ss_pred CCCcceEEEeccEEEEEEEecc--------------------CCCCCccceehhhhhhhcCCCcchHHHHHHH-hC--Cc
Confidence 5567899999999999999998 6888888888899999999999999999995 44 99
Q ss_pred eEEEEeecCCchhHHHHHHHHhcCCceeEeecCCCCcceEEEEEe--CCeeceeecccccccCCcccCCCchhHhhhhcc
Q 019402 81 TSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVV--GGERSLVANLSAANCYKSEHLKRPEIWSIVEKA 158 (341)
Q Consensus 81 v~li~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (341)
+.|+|.+.....-+++++.|++.|||+++....+.....+.++++ .|.|+++......+..+.+++.. -.+.+.
T Consensus 58 cef~Gvlsr~~~f~~lLddl~~rgIdishcpftd~~pp~ssiI~~r~s~trTil~~dks~p~vT~~dF~k----vdl~qy 133 (308)
T KOG2947|consen 58 CEFFGVLSRGHVFRFLLDDLRRRGIDISHCPFTDHSPPFSSIIINRNSGTRTILYCDKSLPDVTATDFEK----VDLTQY 133 (308)
T ss_pred hheeeecccchhHHHHHHHHHhcCCCcccCccccCCCCcceEEEecCCCceEEEEecCCCccccHHHhhh----ccccee
Confidence 999999999888999999999999999999766666666666665 48888888877777888777654 457899
Q ss_pred eEEEEeccccccCHHHHHHHHHHHHh----cCCeEEEeCCcHHHHhhhhHHHHhhCCCCcEEEcCHHHHHHHHhhcCCCC
Q 019402 159 KYYYIAGFFLTVSPESIQMVAEHAAA----KNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGWET 234 (341)
Q Consensus 159 ~~v~i~~~~~~~~~~~~~~~~~~~~~----~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~ 234 (341)
.|+|+.+.+.......++.+++.-.+ .++.+.+|+-.+. +....++..+|+++++++=++.+. -
T Consensus 134 ~WihfE~Rnp~etlkM~~~I~~~N~r~pe~qrI~vSvd~en~r------eq~~~l~am~DyVf~sK~~a~~~g------f 201 (308)
T KOG2947|consen 134 GWIHFEARNPSETLKMLQRIDAHNTRQPEEQRIRVSVDVENPR------EQLFQLFAMCDYVFVSKDVAKHLG------F 201 (308)
T ss_pred eeEEEecCChHHHHHHHHHHHHhhcCCCccceEEEEEEecCcH------HHHHHHhhcccEEEEEHHHHhhhc------c
Confidence 99999974322112223333332221 3456777776543 557788999999999999887764 3
Q ss_pred CCHHHHHHHHhcCCCCCCCCccEEEEeeCCCCEEEE-eCCeEEEEecccCCCCcccCCCCcchhhHHHHHHH-HhcCCCH
Q 019402 235 DNVEEIALKISQWPKASGTHKRITVITQGADPVVVA-EDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQ-LVQEKPV 312 (341)
Q Consensus 235 ~~~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~-~~~~~~~v~~~~~~~~~vvdttGAGDaf~a~~~~~-l~~g~~~ 312 (341)
.+++++.+.+....+ .+..-+.+|+-.++.|+-.. .+++.+++++++.| ++||+.|+||+|.|||+|+ +.++.++
T Consensus 202 ks~rea~~~l~~r~~-~~~pkpv~I~~w~~eGA~~l~adg~yfev~a~~pp--kvVD~lg~~DtF~A~vIyA~lk~~r~l 278 (308)
T KOG2947|consen 202 KSPREACEGLYGRVP-KGKPKPVLICPWASEGAGALGADGKYFEVDAFKPP--KVVDTLGAGDTFNAGVIYALLKQGRSL 278 (308)
T ss_pred CCHHHHHHHHHhhcc-cCCCCcEEEeccccccccccCCCCCEEecCCCCCc--cceeeccCCCcchHHHHHHHHHhhhhH
Confidence 567788777754322 23334568888999888654 57789999988766 9999999999999999999 5789999
Q ss_pred HHHHHHHHHHHhhhhhhccc
Q 019402 313 EDCVRTGCYAANVVIQRSGC 332 (341)
Q Consensus 313 ~~a~~~A~~~aa~~v~~~g~ 332 (341)
.+|++||+++|+.++...|.
T Consensus 279 ~eAvdfg~rvas~Kl~g~Gf 298 (308)
T KOG2947|consen 279 AEAVDFGNRVASKKLGGQGF 298 (308)
T ss_pred HHHHHHHHHhhhcccccccc
Confidence 99999999999999999987
No 48
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.1e-31 Score=234.88 Aligned_cols=295 Identities=16% Similarity=0.178 Sum_probs=225.9
Q ss_pred cceEEEecCceeeeEeecCHHHHHHcCCCCCceEEecCcccchHHHHhccCCceeecCchhHHHHHHHHHHhCCCCceEE
Q 019402 4 EGILLGMGNPLLDISAVVDEEFLKKYDIKLNNAILAEDKHLPMYDELASKENVEYIAGGATQNSIKVAQWMLQIPGATSY 83 (341)
Q Consensus 4 ~~~i~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~~lg~~v~l 83 (341)
+.+|+|+|.+++|.++.-+-+.+ ....|--..........+|| +.|+|..++. ||.++.+
T Consensus 10 ~~kVLVvGDvmLDrY~~G~~~RI----------------SPEAPVPVv~v~~e~~rlGG-AaNVa~Nias---LGa~a~l 69 (467)
T COG2870 10 QAKVLVVGDVMLDRYWYGKVSRI----------------SPEAPVPVVKVEKEEERLGG-AANVAKNIAS---LGANAYL 69 (467)
T ss_pred CCcEEEEcceeeeeecccccccc----------------CCCCCCceEEeccccccccc-HHHHHHHHHH---cCCCEEE
Confidence 45899999999999998652111 11223335566778889999 8999999887 4599999
Q ss_pred EEeecCCchhHHHHHHHHhcCCceeEeecCCCCcceEEEEEeCCeeceeecccccccCC-cccCCCchhHhhhhcceEEE
Q 019402 84 IGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVVGGERSLVANLSAANCYK-SEHLKRPEIWSIVEKAKYYY 162 (341)
Q Consensus 84 i~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~ 162 (341)
+|.+|.|..|+.+.+.|...+++..+++.+.++|..-..++...++-+-.......... ...+. ..+.+.+.+.|+++
T Consensus 70 ~GvvG~Deag~~L~~~l~~~~i~~~l~~~~~r~T~~K~Rv~s~nQQllRvD~Ee~~~~~~~~~ll-~~~~~~l~~~~~vV 148 (467)
T COG2870 70 VGVVGKDEAGKALIELLKANGIDSDLLRDKNRPTIVKLRVLSRNQQLLRLDFEEKFPIEDENKLL-EKIKNALKSFDALV 148 (467)
T ss_pred EEeeccchhHHHHHHHHHhcCcccceEeecCCCceeeeeeecccceEEEecccccCcchhHHHHH-HHHHHHhhcCCEEE
Confidence 99999999999999999999999888888888898888777543332211111000110 01111 23446788999999
Q ss_pred EeccccccCHHHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCCCCcEEEcCHHHHHHHHhhcCCCCCCHHHHHH
Q 019402 163 IAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGWETDNVEEIAL 242 (341)
Q Consensus 163 i~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~ 242 (341)
++-|....-.. .+.+++.|+++++++.+||.+... +....+.++.||..|++...+.+..+ ++..+...
T Consensus 149 LSDY~KG~L~~-~q~~I~~ar~~~~pVLvDPKg~Df---------~~Y~GAtLiTPN~~E~~~~vg~~~~e-~el~~~g~ 217 (467)
T COG2870 149 LSDYAKGVLTN-VQKMIDLAREAGIPVLVDPKGKDF---------EKYRGATLITPNLKEFEEAVGKCKSE-EELEERGQ 217 (467)
T ss_pred Eeccccccchh-HHHHHHHHHHcCCcEEECCCCcch---------hhhCCCeecCCCHHHHHHHHcccccH-HHHHHHHH
Confidence 99887433222 889999999999999999987542 34567999999999999998876543 44555555
Q ss_pred HHhcCCCCCCCCccEEEEeeCCCCEEEEeCCeEEEEecccCCCCcccCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 019402 243 KISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYA 322 (341)
Q Consensus 243 ~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~v~~~~~~~~~vvdttGAGDaf~a~~~~~l~~g~~~~~a~~~A~~~ 322 (341)
+|. .+.....++||++++|..+++.++..|+|+..- ++.|.|||||+-+|.|.++++.|.++++|+.+||++
T Consensus 218 kL~-----~~~~L~alLvTRsE~GMtL~~~~~~~h~pt~Ak---EVyDVTGAGDTVIa~la~~laaG~s~~eAc~lAN~A 289 (467)
T COG2870 218 KLK-----EELDLSALLVTRSEKGMTLFQEGKPLHFPARAK---EVYDVTGAGDTVIAVLAAALAAGASLEEACELANAA 289 (467)
T ss_pred HHH-----HhhCcceEEEEeccCCceeecCCcccccchhhe---eeeeccCCCchHHHHHHHHHHcCCCHHHHHHHhhhh
Confidence 553 345678899999999999999888888887644 899999999999999999999999999999999999
Q ss_pred HhhhhhhccccCCCCC
Q 019402 323 ANVVIQRSGCTYPPKP 338 (341)
Q Consensus 323 aa~~v~~~g~~~p~~~ 338 (341)
|+.+|.+.|...-+.+
T Consensus 290 agiVVgKlGTatvs~~ 305 (467)
T COG2870 290 AGIVVGKLGTATVSPE 305 (467)
T ss_pred cceEEeeccceeecHH
Confidence 9999999998543333
No 49
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=99.96 E-value=5e-29 Score=210.33 Aligned_cols=195 Identities=27% Similarity=0.356 Sum_probs=161.4
Q ss_pred eEEEecCceeeeEeecCHHHHHHcCCCCCceEEecCcccchHHHHhccCCceeecCchhHHHHHHHHHHhCCCCceEEEE
Q 019402 6 ILLGMGNPLLDISAVVDEEFLKKYDIKLNNAILAEDKHLPMYDELASKENVEYIAGGATQNSIKVAQWMLQIPGATSYIG 85 (341)
Q Consensus 6 ~i~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~~lg~~v~li~ 85 (341)
+|+++|++++|++..++ +.|.+++.++..+....+||+|.|+|.++++ + |.++.++|
T Consensus 1 ~v~~iG~~~~D~~~~~~--------------------~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~-L--G~~~~~~~ 57 (196)
T cd00287 1 RVLVVGSLLVDVILRVD--------------------ALPLPGGLVRPGDTEERAGGGAANVAVALAR-L--GVSVTLVG 57 (196)
T ss_pred CEEEEccceEEEEEEec--------------------cCCCCCCeEEeceeeecCCCcHHHHHHHHHH-C--CCcEEEEE
Confidence 48999999999999998 6788888888999999999999999999998 4 59999999
Q ss_pred eecCCchhHHHHHHHHhcCCceeEeecCCCCcceEEEEEeCCeeceeecccccccCCcccCCCchhHhhhhcceEEEEec
Q 019402 86 CIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVVGGERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYIAG 165 (341)
Q Consensus 86 ~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~ 165 (341)
+|++|+++
T Consensus 58 ------------------------------------------------------------------------~~~v~i~~ 65 (196)
T cd00287 58 ------------------------------------------------------------------------ADAVVISG 65 (196)
T ss_pred ------------------------------------------------------------------------ccEEEEec
Confidence 78999988
Q ss_pred cccccCHHHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCCCCcEEEcCHHHHHHHHhhcCCCCCCHHHHHHHHh
Q 019402 166 FFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGWETDNVEEIALKIS 245 (341)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~ 245 (341)
..+. .+.+.++++.+++.+.++++|+........ .+.+.++++++|++++|.+|++.+++....+.++..++++.+
T Consensus 66 ~~~~--~~~~~~~~~~~~~~~~~v~~D~~~~~~~~~-~~~~~~~~~~~dvl~~n~~E~~~l~~~~~~~~~~~~~~~~~l- 141 (196)
T cd00287 66 LSPA--PEAVLDALEEARRRGVPVVLDPGPRAVRLD-GEELEKLLPGVDILTPNEEEAEALTGRRDLEVKEAAEAAALL- 141 (196)
T ss_pred ccCc--HHHHHHHHHHHHHcCCeEEEeCCccccccc-cchHHHHHhhCCEECCCHHHHHHHhCCCCCChHHHHHHHHHH-
Confidence 5432 478888999999999999999976532211 122567889999999999999999875443333445677777
Q ss_pred cCCCCCCCCccEEEEeeCCCCEEEEe-CCeEEEEecccCCCCcccCCCCcchhhHHHHHHHHh
Q 019402 246 QWPKASGTHKRITVITQGADPVVVAE-DGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLV 307 (341)
Q Consensus 246 ~~~~~~~~~~~~vvvt~G~~G~~~~~-~~~~~~v~~~~~~~~~vvdttGAGDaf~a~~~~~l~ 307 (341)
...+++.+|+|+|++|+++++ ++..+++++++. +++||+||||+|+|||++++.
T Consensus 142 -----~~~g~~~vvvt~G~~g~~~~~~~~~~~~~~~~~~---~~vdt~GAGD~f~ag~~~~l~ 196 (196)
T cd00287 142 -----LSKGPKVVIVTLGEKGAIVATRGGTEVHVPAFPV---KVVDTTGAGDAFLAALAAGLA 196 (196)
T ss_pred -----HhcCCCEEEEEECCCccEEEecCCceEEcCCccC---CcccCCCchHHHHHHHHHHhC
Confidence 567789999999999999998 777788776643 789999999999999999874
No 50
>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and require its precursors in the form of vitamin B6 (pyridoxal, pyridoxine, and pyridoxamine) from their diet. Pyridoxal kinase encoding genes are also found in many other species including yeast and bacteria.
Probab=99.81 E-value=2.9e-19 Score=156.92 Aligned_cols=165 Identities=13% Similarity=0.140 Sum_probs=124.8
Q ss_pred hcceEEEEecccc-ccCHHHHHHHHHHHHhc--CCeEEEeCC----cHHH--HhhhhHHHHhhCC-CCcEEEcCHHHHHH
Q 019402 156 EKAKYYYIAGFFL-TVSPESIQMVAEHAAAK--NKVFMMNLS----APFI--CEFFREPQEKALP-YMDYVFGNETEART 225 (341)
Q Consensus 156 ~~~~~v~i~~~~~-~~~~~~~~~~~~~~~~~--~~~v~~d~~----~~~~--~~~~~~~~~~~l~-~~dil~~n~~E~~~ 225 (341)
.+.+++. .|+.. ....+.+.++++.++++ +.++++|+. +..| .....+.+.+++. ++|++++|.+|++.
T Consensus 71 ~~~~~v~-~G~l~~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~l~~~~dvi~pN~~Ea~~ 149 (254)
T cd01173 71 LEYDAVL-TGYLGSAEQVEAVAEIVKRLKEKNPNLLYVCDPVMGDNGKLYVVAEEIVPVYRDLLVPLADIITPNQFELEL 149 (254)
T ss_pred ccCCEEE-EecCCCHHHHHHHHHHHHHHHHhCCCceEEECCCCCcCCcceecChhHHHHHHHHHHhcCCEECCcHHHHHH
Confidence 4567774 55432 23457788888888877 889999983 2222 2224455667676 99999999999999
Q ss_pred HHhhcCCCCCCHHHHHHHHhcCCCCCCCCccEEEEeeCCC------CEEEEeCCeEEEEecccCCCCcccCCCCcchhhH
Q 019402 226 FAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGAD------PVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFV 299 (341)
Q Consensus 226 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vvvt~G~~------G~~~~~~~~~~~v~~~~~~~~~vvdttGAGDaf~ 299 (341)
+++....+.++.+++++++ ...|++.|+||.|.. |++++++++.+.++.+.. +. ++|++||||+|+
T Consensus 150 l~g~~~~~~~~~~~~~~~l------~~~g~~~Vvit~g~~~~~~~~g~~~~~~~~~~~~~~~~~-~~-~~~~~GaGD~f~ 221 (254)
T cd01173 150 LTGKKINDLEDAKAAARAL------HAKGPKTVVVTSVELADDDRIEMLGSTATEAWLVQRPKI-PF-PAYFNGTGDLFA 221 (254)
T ss_pred HcCCCcCCHHHHHHHHHHH------HHhCCCEEEEEeeccCCCCcEEEEEEecCccEEEEeecc-CC-CCCcCChHHHHH
Confidence 9876544445667788888 567889999999985 788887766555554444 22 699999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhhhhhh
Q 019402 300 GGFLSQLVQEKPVEDCVRTGCYAANVVIQR 329 (341)
Q Consensus 300 a~~~~~l~~g~~~~~a~~~A~~~aa~~v~~ 329 (341)
|+|+++|++|+++++|+++|++.....++.
T Consensus 222 a~~~~~l~~g~~~~~a~~~A~~~~~~~i~~ 251 (254)
T cd01173 222 ALLLARLLKGKSLAEALEKALNFVHEVLEA 251 (254)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998777654
No 51
>PRK12412 pyridoxal kinase; Reviewed
Probab=99.79 E-value=2.6e-18 Score=151.64 Aligned_cols=161 Identities=21% Similarity=0.180 Sum_probs=124.7
Q ss_pred ceEEEEeccccccCHHHHHHHHHHHHhcCCe-EEEeCCcHH------HHhh-hhHHHHhhCCCCcEEEcCHHHHHHHHhh
Q 019402 158 AKYYYIAGFFLTVSPESIQMVAEHAAAKNKV-FMMNLSAPF------ICEF-FREPQEKALPYMDYVFGNETEARTFAKV 229 (341)
Q Consensus 158 ~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~-v~~d~~~~~------~~~~-~~~~~~~~l~~~dil~~n~~E~~~l~~~ 229 (341)
.|.+.+.- -.+.+.+..+++.+++.+.+ +++||.... .... .....+++++++|++++|..|++.|++.
T Consensus 73 ~~~ikiG~---l~~~~~v~~i~~~~~~~~~~~vv~DPv~~~~~g~~~~~~~~~~~~~~~ll~~advitpN~~Ea~~L~g~ 149 (268)
T PRK12412 73 VDALKTGM---LGSVEIIEMVAETIEKHNFKNVVVDPVMVCKGADEALHPETNDCLRDVLVPKALVVTPNLFEAYQLSGV 149 (268)
T ss_pred CCEEEECC---CCCHHHHHHHHHHHHhcCCCCEEECcCeeeCCCCcCCChHHHHHHHHhhhccceEEcCCHHHHHHHhCc
Confidence 68888752 34678888898999888876 999985311 1111 1223456889999999999999999875
Q ss_pred cCCCCCCHHHHHHHHhcCCCCCCCCccEEEEeeCCCCE------EEEeCCeEEEEecccCCCCcccCCCCcchhhHHHHH
Q 019402 230 HGWETDNVEEIALKISQWPKASGTHKRITVITQGADPV------VVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFL 303 (341)
Q Consensus 230 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~------~~~~~~~~~~v~~~~~~~~~vvdttGAGDaf~a~~~ 303 (341)
...+.++..++++++ .+.|++.|+||.|..|+ +++.++..++++.+++ +.+|++||||+|+|+|+
T Consensus 150 ~~~~~~~~~~aa~~l------~~~g~~~ViIt~G~~g~~~~~~~~~~~~~~~~~~~~~~v---~~~~t~GaGD~f~aa~a 220 (268)
T PRK12412 150 KINSLEDMKEAAKKI------HALGAKYVLIKGGSKLGTETAIDVLYDGETFDLLESEKI---DTTNTHGAGCTYSAAIT 220 (268)
T ss_pred CCCCHHHHHHHHHHH------HhcCCCEEEEeccCCCCCCceEEEEEeCCEEEEEEeCcc---CCCCCCchHHHHHHHHH
Confidence 433445577788888 56789999999998763 4555666566776544 78899999999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHhhhhhhc
Q 019402 304 SQLVQEKPVEDCVRTGCYAANVVIQRS 330 (341)
Q Consensus 304 ~~l~~g~~~~~a~~~A~~~aa~~v~~~ 330 (341)
++|++|+++++|+++|.++....++..
T Consensus 221 a~l~~g~~l~eA~~~A~~~~~~~i~~~ 247 (268)
T PRK12412 221 AELAKGKPVKEAVKTAKEFITAAIRYS 247 (268)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888763
No 52
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase. This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.
Probab=99.79 E-value=4.7e-18 Score=149.00 Aligned_cols=162 Identities=14% Similarity=0.168 Sum_probs=124.7
Q ss_pred cceEEEEeccccccCHHHHHHHHHHHHhcCC-eEEEeCCcH------HHHhhh-hHHHHhhCCCCcEEEcCHHHHHHHHh
Q 019402 157 KAKYYYIAGFFLTVSPESIQMVAEHAAAKNK-VFMMNLSAP------FICEFF-REPQEKALPYMDYVFGNETEARTFAK 228 (341)
Q Consensus 157 ~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~-~v~~d~~~~------~~~~~~-~~~~~~~l~~~dil~~n~~E~~~l~~ 228 (341)
+.+.+.+.- -.+.+.+..+++.+++.+. ++++||... .+.... ......+++++|++++|..|++.|++
T Consensus 67 ~~~aikiG~---l~~~~~~~~i~~~~~~~~~~~vVlDPv~~~~~g~~l~~~~~~~~~~~~ll~~~dvitpN~~Ea~~L~g 143 (254)
T TIGR00097 67 PVDAAKTGM---LASAEIVEAVARKLREYPVRPLVVDPVMVAKSGAPLLEEEAIEALRKRLLPLATLITPNLPEAEALLG 143 (254)
T ss_pred CCCEEEECC---cCCHHHHHHHHHHHHhcCCCcEEECCccccCCCCcCCCHHHHHHHHHhccccccEecCCHHHHHHHhC
Confidence 356677642 2367889999999998888 699997421 111111 12234688999999999999999987
Q ss_pred hcCCCCCCHHHHHHHHhcCCCCCCCCccEEEEeeCC----CCE-EEEeCCeEEEEecccCCCCcccCCCCcchhhHHHHH
Q 019402 229 VHGWETDNVEEIALKISQWPKASGTHKRITVITQGA----DPV-VVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFL 303 (341)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vvvt~G~----~G~-~~~~~~~~~~v~~~~~~~~~vvdttGAGDaf~a~~~ 303 (341)
....+.++..++++.+ ...|++.|+||.|+ +|. +++++++.++++.+++ +++|++||||+|+|+|+
T Consensus 144 ~~~~~~~~~~~~a~~l------~~~g~~~Vvvt~G~~~~~~~~~~~~~~~~~~~~~~~~~---~~~d~~GaGD~f~aala 214 (254)
T TIGR00097 144 TKIRTEQDMIKAAKKL------RELGPKAVLIKGGHLEGDQAVDVLFDGGEIHILKAPRI---ETKNTHGTGCTLSAAIA 214 (254)
T ss_pred CCCCCHHHHHHHHHHH------HhcCCCEEEEeCCCCCCCceeEEEEECCeEEEEEeccc---CCCCCCChHHHHHHHHH
Confidence 5433334566788888 56789999999997 344 5577776777776544 78999999999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHhhhhhhc
Q 019402 304 SQLVQEKPVEDCVRTGCYAANVVIQRS 330 (341)
Q Consensus 304 ~~l~~g~~~~~a~~~A~~~aa~~v~~~ 330 (341)
++|++|+++++|+++|++++...+++.
T Consensus 215 a~la~g~~l~eA~~~A~~~~~~~i~~~ 241 (254)
T TIGR00097 215 ANLAKGLSLKEAVKEAKEFVTGAIRYG 241 (254)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999764
No 53
>TIGR00687 pyridox_kin pyridoxal kinase. ThiD and related proteins form an outgroup.
Probab=99.79 E-value=1.6e-18 Score=154.79 Aligned_cols=163 Identities=13% Similarity=0.164 Sum_probs=117.7
Q ss_pred hhcceEEEEecccc-ccCHHHHHHHHHHHHhcC--CeEEEeCC------cHHHHhhhhHHH-HhhCCCCcEEEcCHHHHH
Q 019402 155 VEKAKYYYIAGFFL-TVSPESIQMVAEHAAAKN--KVFMMNLS------APFICEFFREPQ-EKALPYMDYVFGNETEAR 224 (341)
Q Consensus 155 ~~~~~~v~i~~~~~-~~~~~~~~~~~~~~~~~~--~~v~~d~~------~~~~~~~~~~~~-~~~l~~~dil~~n~~E~~ 224 (341)
+.+.|++ +.|+.. ....+.+.++++.+++.+ ..+++||. .........+.+ .++++++|++++|.+|++
T Consensus 72 ~~~~d~v-~~G~l~~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv~~d~~~~~~~~~~~~~~~~~~ll~~adii~pN~~Ea~ 150 (286)
T TIGR00687 72 LNQCDAV-LSGYLGSAEQVAMVVGIVRQVKQANPQALYVCDPVMGDPEKGCYVAPDLLEVYREKAIPVADIITPNQFELE 150 (286)
T ss_pred cccCCEE-EECCCCCHHHHHHHHHHHHHHHHhCCCCcEEECCeeeeCCCCeeeChhHHHHHHHhccccccEecCCHHHHH
Confidence 4578887 555532 223468888888888776 56788982 211111222334 458899999999999999
Q ss_pred HHHhhcCCCCCCHHHHHHHHhcCCCCCCCCccEEEEe-eCCCCE--------EEEeCCeEEEEecccCCCCc-ccCCCCc
Q 019402 225 TFAKVHGWETDNVEEIALKISQWPKASGTHKRITVIT-QGADPV--------VVAEDGKVKLFPVILLPKEK-LVDTNGA 294 (341)
Q Consensus 225 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vvvt-~G~~G~--------~~~~~~~~~~v~~~~~~~~~-vvdttGA 294 (341)
.+++....+.++..++++.+ ...|++.+||| .|.+|+ +++++++.++++.++. + ++|++||
T Consensus 151 ~L~g~~~~~~~~~~~~~~~l------~~~g~~~Viit~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~d~~Ga 221 (286)
T TIGR00687 151 LLTGRKINTVEEALAAADAL------IAMGPDIVLVTHLARAGSQRDRDFEGLVVTQEGRWHISRPLA---VFMRQPVGT 221 (286)
T ss_pred HHhCCCcCCHHHHHHHHHHH------HHhCCCEEEEEeccccCCCCCcceeEEEEcCCceEEEeccCc---CCCCCCCCh
Confidence 99875433344556677777 56688999999 687775 4455565666665444 4 6899999
Q ss_pred chhhHHHHHHHHhcCCCHHHHHHHHHHHHhhhh
Q 019402 295 GDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVI 327 (341)
Q Consensus 295 GDaf~a~~~~~l~~g~~~~~a~~~A~~~aa~~v 327 (341)
||+|+|+|++++++|+++++|+++|+++....+
T Consensus 222 GD~f~A~~l~~l~~g~~~~~al~~A~~~v~~~l 254 (286)
T TIGR00687 222 GDLIAALLLATLLHGNSLKEALEKTVSAVYHVL 254 (286)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999944333
No 54
>PRK05756 pyridoxamine kinase; Validated
Probab=99.78 E-value=2.6e-18 Score=153.31 Aligned_cols=166 Identities=17% Similarity=0.179 Sum_probs=122.6
Q ss_pred hhcceEEEEecccc-ccCHHHHHHHHHHHHhcC--CeEEEeCCcH-----HH-Hhhh-hHHHHhhCCCCcEEEcCHHHHH
Q 019402 155 VEKAKYYYIAGFFL-TVSPESIQMVAEHAAAKN--KVFMMNLSAP-----FI-CEFF-REPQEKALPYMDYVFGNETEAR 224 (341)
Q Consensus 155 ~~~~~~v~i~~~~~-~~~~~~~~~~~~~~~~~~--~~v~~d~~~~-----~~-~~~~-~~~~~~~l~~~dil~~n~~E~~ 224 (341)
+...+++ ++|+.. ....+.+.++++.+++.+ ..+++||--. .+ .+.. ......+++++|++++|.+|++
T Consensus 72 l~~~~~v-~~G~l~~~~~~~~v~~~i~~~k~~~~~~~~v~DPv~~d~~~~~~~~~~~~~~~~~~ll~~adiitpN~~Ea~ 150 (286)
T PRK05756 72 LGECDAV-LSGYLGSAEQGEAILDAVRRVKAANPQALYFCDPVMGDPEKGCIVAPGVAEFLRDRALPAADIITPNLFELE 150 (286)
T ss_pred cccCCEE-EECCCCCHHHHHHHHHHHHHHHHhCCCceEEECCccccCCCCEEECccHhHHHHHhhcccccEecCCHHHHH
Confidence 3467866 566533 223467888888888766 4577886311 11 1111 2233458999999999999999
Q ss_pred HHHhhcCCCCCCHHHHHHHHhcCCCCCCCCccEEEEeeCCC--------CEEEEeCCeEEEEecccCCCCcc-cCCCCcc
Q 019402 225 TFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGAD--------PVVVAEDGKVKLFPVILLPKEKL-VDTNGAG 295 (341)
Q Consensus 225 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vvvt~G~~--------G~~~~~~~~~~~v~~~~~~~~~v-vdttGAG 295 (341)
.|++....+.++..++++++ ...|++.|+||.|.. |++++++++.++++.+++ ++ +|++|||
T Consensus 151 ~L~g~~~~~~~~~~~~~~~l------~~~g~~~Vvvt~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~~v~~~GaG 221 (286)
T PRK05756 151 WLSGRPVETLEDAVAAARAL------IARGPKIVLVTSLARAGYPADRFEMLLVTADGAWHISRPLV---DFMRQPVGVG 221 (286)
T ss_pred HHhCCCcCCHHHHHHHHHHH------HHhCCCEEEEeccccCCCCCCcEEEEEEECCceEEEecCcc---CCCCCCCChH
Confidence 99875443344566777777 566889999999876 477777776777765544 56 7999999
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHhhhhhhc
Q 019402 296 DAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQRS 330 (341)
Q Consensus 296 Daf~a~~~~~l~~g~~~~~a~~~A~~~aa~~v~~~ 330 (341)
|+|+|+|++++++|+++++|+++|++.....++..
T Consensus 222 D~f~a~~~a~l~~g~~~~~al~~A~~~~~~~i~~~ 256 (286)
T PRK05756 222 DLTSALFLARLLQGGSLEEALEHTTAAVYEVMART 256 (286)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888763
No 55
>PRK12413 phosphomethylpyrimidine kinase; Provisional
Probab=99.77 E-value=1.3e-17 Score=146.40 Aligned_cols=163 Identities=17% Similarity=0.169 Sum_probs=117.1
Q ss_pred hcceEEEEe-ccccccCHHHHHHHHHHHH-hcCCeEEEeCCcHH--H----HhhhhHHHHhhCCCCcEEEcCHHHHHHHH
Q 019402 156 EKAKYYYIA-GFFLTVSPESIQMVAEHAA-AKNKVFMMNLSAPF--I----CEFFREPQEKALPYMDYVFGNETEARTFA 227 (341)
Q Consensus 156 ~~~~~v~i~-~~~~~~~~~~~~~~~~~~~-~~~~~v~~d~~~~~--~----~~~~~~~~~~~l~~~dil~~n~~E~~~l~ 227 (341)
...++..+. |+.. +.+....+++.++ ..+.++++||.... | .+...+.+.++++++|++++|.+|++.|+
T Consensus 67 ~~~~~~~i~~G~l~--~~~~~~~~~~~~~~~~~~~vv~DPv~~~~~~~~~~~~~~~~~l~~ll~~~dli~pN~~E~~~L~ 144 (253)
T PRK12413 67 KDVPFSAIKIGLLP--NVEIAEQALDFIKGHPGIPVVLDPVLVCKETHDVEVSELRQELIQFFPYVTVITPNLVEAELLS 144 (253)
T ss_pred hCCCCCEEEECCcC--CHHHHHHHHHHHHhCCCCCEEEcCceecCCCCccccHHHHHHHHHHhccCcEECCCHHHHHHHh
Confidence 344555554 4321 4456666666666 46788999974221 1 11123445578899999999999999999
Q ss_pred hhcCCCCCCHHHHHHHHhcCCCCCCCCccEEEEeeCCCC-----E-EEEeCCeEEEEecccCCCCcccCCCCcchhhHHH
Q 019402 228 KVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADP-----V-VVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGG 301 (341)
Q Consensus 228 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G-----~-~~~~~~~~~~v~~~~~~~~~vvdttGAGDaf~a~ 301 (341)
+....+.++.+++++.+ ...|++.|+||.|++| . +++.++..+ ++.++. ..+|++||||+|+|+
T Consensus 145 g~~~~~~~~~~~~a~~l------~~~g~~~Vvvt~g~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~GaGDaf~a~ 214 (253)
T PRK12413 145 GKEIKTLEDMKEAAKKL------YDLGAKAVVIKGGNRLSQKKAIDLFYDGKEFV-ILESPV---LEKNNIGAGCTFASS 214 (253)
T ss_pred CcCCCCHHHHHHHHHHH------HHcCCCEEEEeCCCCCCCCcceEEEEcCCEEE-EEeecc---cCCCCCChHHHHHHH
Confidence 86544444566778888 5668899999999864 2 344444443 444443 668999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhhhhhhc
Q 019402 302 FLSQLVQEKPVEDCVRTGCYAANVVIQRS 330 (341)
Q Consensus 302 ~~~~l~~g~~~~~a~~~A~~~aa~~v~~~ 330 (341)
|+++|++|+++++|+++|.++....++..
T Consensus 215 ~~~~l~~g~~l~ea~~~A~~~~~~~l~~~ 243 (253)
T PRK12413 215 IASQLVKGKSPLEAVKNSKDFVYQAIQQS 243 (253)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988888764
No 56
>PRK06427 bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed
Probab=99.77 E-value=1.4e-17 Score=147.19 Aligned_cols=162 Identities=17% Similarity=0.187 Sum_probs=123.1
Q ss_pred cceEEEEeccccccCHHHHHHHHHHHHhcCC-eEEEeCCc------HHHHhhh-hHHHHhhCCCCcEEEcCHHHHHHHHh
Q 019402 157 KAKYYYIAGFFLTVSPESIQMVAEHAAAKNK-VFMMNLSA------PFICEFF-REPQEKALPYMDYVFGNETEARTFAK 228 (341)
Q Consensus 157 ~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~-~v~~d~~~------~~~~~~~-~~~~~~~l~~~dil~~n~~E~~~l~~ 228 (341)
+.+.+.+.- -.+.+.+..+++.+++.+. ++++||.. +.+.... ....+++++++|++++|..|++.|++
T Consensus 73 ~~~ai~iG~---l~~~~~~~~i~~~~~~~~~~~vv~DPv~~~~~~~~~~~~~~~~~~~~~ll~~~dvitpN~~Ea~~L~g 149 (266)
T PRK06427 73 RIDAVKIGM---LASAEIIETVAEALKRYPIPPVVLDPVMIAKSGDPLLADDAVAALRERLLPLATLITPNLPEAEALTG 149 (266)
T ss_pred CCCEEEECC---cCCHHHHHHHHHHHHhCCCCCEEEcCccccCCCCcCCCHHHHHHHHHhhhCcCeEEcCCHHHHHHHhC
Confidence 567777753 2357788888888888775 79999841 1111111 22234689999999999999999987
Q ss_pred hcCCCCCC-HHHHHHHHhcCCCCCCCCccEEEEeeCC--CCE----EEEeCCeEEEEecccCCCCcccCCCCcchhhHHH
Q 019402 229 VHGWETDN-VEEIALKISQWPKASGTHKRITVITQGA--DPV----VVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGG 301 (341)
Q Consensus 229 ~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~vvvt~G~--~G~----~~~~~~~~~~v~~~~~~~~~vvdttGAGDaf~a~ 301 (341)
....+.++ .+++++.+ .+.|++.||||.|. +|. +++.+++.++++.+++ +.+|++|+||+|+|+
T Consensus 150 ~~~~~~~~~~~~~a~~l------~~~g~~~Vvit~g~~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~GaGD~f~a~ 220 (266)
T PRK06427 150 LPIADTEDEMKAAARAL------HALGCKAVLIKGGHLLDGEESVDWLFDGEGEERFSAPRI---PTKNTHGTGCTLSAA 220 (266)
T ss_pred CCCCCcHHHHHHHHHHH------HhcCCCEEEEcCCCCCCCCceeEEEEeCCcEEEEEeeeE---CCCCCCChHHHHHHH
Confidence 54333233 56788888 56788999999998 553 5666666666776544 678999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhhhhhhc
Q 019402 302 FLSQLVQEKPVEDCVRTGCYAANVVIQRS 330 (341)
Q Consensus 302 ~~~~l~~g~~~~~a~~~A~~~aa~~v~~~ 330 (341)
|++++++|+++++|+++|++.+..++++.
T Consensus 221 l~~~l~~g~~l~~A~~~A~~~~~~~i~~~ 249 (266)
T PRK06427 221 IAAELAKGASLLDAVQTAKDYVTRAIRHA 249 (266)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998874
No 57
>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.
Probab=99.76 E-value=2.3e-17 Score=143.79 Aligned_cols=161 Identities=17% Similarity=0.166 Sum_probs=121.8
Q ss_pred cceEEEEeccccccCHHHHHHHHHHHHhc-CCeEEEeCCcH------HHHhhh-hHHHHhhCCCCcEEEcCHHHHHHHHh
Q 019402 157 KAKYYYIAGFFLTVSPESIQMVAEHAAAK-NKVFMMNLSAP------FICEFF-REPQEKALPYMDYVFGNETEARTFAK 228 (341)
Q Consensus 157 ~~~~v~i~~~~~~~~~~~~~~~~~~~~~~-~~~v~~d~~~~------~~~~~~-~~~~~~~l~~~dil~~n~~E~~~l~~ 228 (341)
+.+++.+. + -.+++.+..+.+.+++. +.++++||... .+.... ......+++++|++++|..|++.|++
T Consensus 68 ~~~~i~~G-~--l~~~~~~~~i~~~~~~~~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~ll~~~dvitpN~~Ea~~L~g 144 (242)
T cd01169 68 PVDAIKIG-M--LGSAEIIEAVAEALKDYPDIPVVLDPVMVAKSGDSLLDDDAIEALRELLLPLATLITPNLPEAELLTG 144 (242)
T ss_pred CCCEEEEC-C--CCCHHHHHHHHHHHHhCCCCcEEECCceeCCCCCcccCHHHHHHHHHHhhccCeEEeCCHHHHHHHhC
Confidence 56888874 2 23577888888888876 78899998431 111111 22334567999999999999999988
Q ss_pred hcCCCCCCHHHHHHHHhcCCCCCCCCccEEEEeeCCCC-----EEEEeCCeEEEEecccCCCCcccCCCCcchhhHHHHH
Q 019402 229 VHGWETDNVEEIALKISQWPKASGTHKRITVITQGADP-----VVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFL 303 (341)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G-----~~~~~~~~~~~v~~~~~~~~~vvdttGAGDaf~a~~~ 303 (341)
....+..+..++++.+ ...+++.||||.|..| .+++.+++.++++.+++ +++|++|+||+|+|+|+
T Consensus 145 ~~~~~~~~~~~~~~~l------~~~g~~~Vvit~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~GaGD~f~a~l~ 215 (242)
T cd01169 145 LEIATEEDMMKAAKAL------LALGAKAVLIKGGHLPGDEAVDVLYDGGGFFEFESPRI---DTKNTHGTGCTLSSAIA 215 (242)
T ss_pred CCCCCHHHHHHHHHHH------HhcCCCEEEEecCCCCCCceeEEEEECCcEEEEeccee---CCCCCCChHHHHHHHHH
Confidence 5443333455677777 5678899999999875 36667766777776654 67999999999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHhhhhhh
Q 019402 304 SQLVQEKPVEDCVRTGCYAANVVIQR 329 (341)
Q Consensus 304 ~~l~~g~~~~~a~~~A~~~aa~~v~~ 329 (341)
+++++|+++++|+++|++.-...++.
T Consensus 216 a~l~~g~~~~~A~~~A~~~~~~~i~~ 241 (242)
T cd01169 216 ANLAKGLSLEEAVREAKEYVTQAIRN 241 (242)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999988766653
No 58
>PRK07105 pyridoxamine kinase; Validated
Probab=99.75 E-value=1.5e-17 Score=148.19 Aligned_cols=163 Identities=15% Similarity=0.093 Sum_probs=118.0
Q ss_pred cceEEEEeccccccCHH---HHHHHHHHHHhcCCeEEEeCCcHH----H---HhhhhHHHHhhCCCCcEEEcCHHHHHHH
Q 019402 157 KAKYYYIAGFFLTVSPE---SIQMVAEHAAAKNKVFMMNLSAPF----I---CEFFREPQEKALPYMDYVFGNETEARTF 226 (341)
Q Consensus 157 ~~~~v~i~~~~~~~~~~---~~~~~~~~~~~~~~~v~~d~~~~~----~---~~~~~~~~~~~l~~~dil~~n~~E~~~l 226 (341)
..|.++++-. .+++ .+.++++.+++.+.++++||.... | .+...+.++++++++|++++|.+|++.|
T Consensus 75 ~~~aik~G~l---~~~~~~~~v~~~~~~~~~~~~~vv~DPv~~~~~~l~~~~~~~~~~~~~~ll~~advitpN~~Ea~~L 151 (284)
T PRK07105 75 KFDAIYSGYL---GSPRQIQIVSDFIKYFKKKDLLVVVDPVMGDNGKLYQGFDQEMVEEMRKLIQKADVITPNLTEACLL 151 (284)
T ss_pred ccCEEEECcC---CCHHHHHHHHHHHHHhccCCCeEEECCccccCCcCCCCCCHHHHHHHHHHHhhCCEecCCHHHHHHH
Confidence 5787876422 2344 444445555666788999995211 1 1122345678999999999999999999
Q ss_pred HhhcCC----CCCCHHHHHHHHhcCCCCCCCCccEEEEee-----CCCCEEEEeCC--eEEEEecccCCCCcccCCCCcc
Q 019402 227 AKVHGW----ETDNVEEIALKISQWPKASGTHKRITVITQ-----GADPVVVAEDG--KVKLFPVILLPKEKLVDTNGAG 295 (341)
Q Consensus 227 ~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~vvvt~-----G~~G~~~~~~~--~~~~v~~~~~~~~~vvdttGAG 295 (341)
++.... +.++..++++++ .+.|++.||||. |..|+++++++ ..++.+.+. ..+|++|||
T Consensus 152 ~g~~~~~~~~~~~~~~~~a~~l------~~~g~~~Vvvt~~~~~~g~~g~~~~~~~~~~~~~~~~~~----~~~~~~GaG 221 (284)
T PRK07105 152 LDKPYLEKSYSEEEIKQLLRKL------ADLGPKIVIITSVPFEDGKIGVAYYDRATDRFWKVFCKY----IPAHYPGTG 221 (284)
T ss_pred cCCCcCcCCCCHHHHHHHHHHH------HhcCCCEEEEcCeeeCCCeEEEEEEeCCCCeEEEEeecc----cCCCcCChh
Confidence 875321 233455677777 566889999998 67788887643 445555433 237999999
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHhhhhhhccc
Q 019402 296 DAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQRSGC 332 (341)
Q Consensus 296 Daf~a~~~~~l~~g~~~~~a~~~A~~~aa~~v~~~g~ 332 (341)
|+|+|+|++++++|+++++|+++|.+++...+++...
T Consensus 222 D~f~aa~~~~l~~g~~l~~av~~A~~~~~~~i~~~~~ 258 (284)
T PRK07105 222 DIFTSVITGSLLQGDSLPIALDRAVQFIEKGIRATLG 258 (284)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999886533
No 59
>PRK08176 pdxK pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase; Reviewed
Probab=99.74 E-value=3.5e-17 Score=145.31 Aligned_cols=164 Identities=16% Similarity=0.109 Sum_probs=116.4
Q ss_pred hcceEEEEeccccccCHHHHHHHHHHHHh--cCCeEEEeCCcH-----HH-HhhhhHHH-HhhCCCCcEEEcCHHHHHHH
Q 019402 156 EKAKYYYIAGFFLTVSPESIQMVAEHAAA--KNKVFMMNLSAP-----FI-CEFFREPQ-EKALPYMDYVFGNETEARTF 226 (341)
Q Consensus 156 ~~~~~v~i~~~~~~~~~~~~~~~~~~~~~--~~~~v~~d~~~~-----~~-~~~~~~~~-~~~l~~~dil~~n~~E~~~l 226 (341)
.+.|.++++-....-..+.+.++++..++ .+.++++||.-. .+ .....+.+ +.+++++|++++|..|++.|
T Consensus 87 ~~~d~i~~G~l~s~~~~~~i~~~l~~~~~~~~~~~vv~DPvm~d~~~~~~~~~~~~~~~~~~Ll~~advitPN~~Ea~~L 166 (281)
T PRK08176 87 RQLRAVTTGYMGSASQIKILAEWLTALRADHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQHLLPLAQGLTPNIFELEIL 166 (281)
T ss_pred ccCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCcEEeCCccccCCCCeEECccHHHHHHHHhHhhcCEeCCCHHHHHHH
Confidence 47888888542211122445555555443 467899999511 11 11122334 35889999999999999999
Q ss_pred HhhcCCCCCCHHHHHHHHhcCCCCCCCCccEEEEeeCCCC-------EEEEeCCeEEEEecccCCCCcccCCCCcchhhH
Q 019402 227 AKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADP-------VVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFV 299 (341)
Q Consensus 227 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G-------~~~~~~~~~~~v~~~~~~~~~vvdttGAGDaf~ 299 (341)
++....+.++..++++++ .+.|++.||||.|..| ++++++++.+..+ .+. ..+|++|+||+|+
T Consensus 167 ~g~~~~~~~~~~~~~~~l------~~~g~~~VvIT~g~~g~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~GaGD~fa 236 (281)
T PRK08176 167 TGKPCRTLDSAIAAAKSL------LSDTLKWVVITSAAGNEENQEMQVVVVTADSVNVIS-HPR---VDTDLKGTGDLFC 236 (281)
T ss_pred hCCCCCCHHHHHHHHHHH------HhcCCCEEEEeeccCCCCCCcEEEEEEeCCceEEEe-cCc---cCCCCCChhHHHH
Confidence 875433334556777888 5678999999999988 5667666554433 222 4579999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhhhhhh
Q 019402 300 GGFLSQLVQEKPVEDCVRTGCYAANVVIQR 329 (341)
Q Consensus 300 a~~~~~l~~g~~~~~a~~~A~~~aa~~v~~ 329 (341)
|+|++++++|+++++|+++|+..-...++.
T Consensus 237 a~~~a~l~~g~~l~~Av~~A~~~v~~~i~~ 266 (281)
T PRK08176 237 AELVSGLLKGKALTDAAHRAGLRVLEVMRY 266 (281)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988877765
No 60
>PRK08573 phosphomethylpyrimidine kinase; Provisional
Probab=99.73 E-value=4.9e-17 Score=153.26 Aligned_cols=151 Identities=19% Similarity=0.223 Sum_probs=118.0
Q ss_pred CHHHHHHHHHHHHhcCCeEEEeCCc------HHHHhhh-hHHHHhhCCCCcEEEcCHHHHHHHHhhcCCCCCCHHHHHHH
Q 019402 171 SPESIQMVAEHAAAKNKVFMMNLSA------PFICEFF-REPQEKALPYMDYVFGNETEARTFAKVHGWETDNVEEIALK 243 (341)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~v~~d~~~------~~~~~~~-~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~ 243 (341)
+.+.+..+++.+++.+.++++||.. +.+.... .....++++++|++++|.+|++.|++....+.++.+++++.
T Consensus 82 ~~e~~~~i~~~~k~~g~~vv~DPv~~~~sG~~l~~~~~~~~l~~~llp~adli~pN~~Ea~~L~g~~i~~~~d~~~aa~~ 161 (448)
T PRK08573 82 NREIIEAVAKTVSKYGFPLVVDPVMIAKSGAPLLREDAVDALIKRLLPLATVVTPNRPEAEKLTGMKIRSVEDARKAAKY 161 (448)
T ss_pred CHHHHHHHHHHHHHcCCCEEEcCccccCCCCcCCCHHHHHHHHHhhhccCEEEcCCHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 5688999999999999999999831 2222111 22345788999999999999999988544444456677777
Q ss_pred HhcCCCCCCCCccEEEEeeCC----CCE-EEEeCCeEEEEecccCCCCcccCCCCcchhhHHHHHHHHhcCCCHHHHHHH
Q 019402 244 ISQWPKASGTHKRITVITQGA----DPV-VVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRT 318 (341)
Q Consensus 244 l~~~~~~~~~~~~~vvvt~G~----~G~-~~~~~~~~~~v~~~~~~~~~vvdttGAGDaf~a~~~~~l~~g~~~~~a~~~ 318 (341)
+.+ ..|++.|+||.|. +|+ +++.++..++++.+++ +++|++||||+|+|+|++++++|+++++|+++
T Consensus 162 L~~-----~~G~~~VvVt~G~~~g~~~~~~~~~~~~~~~~~~~~v---~~~dt~GAGDaFsAa~aa~l~~G~~l~eAl~~ 233 (448)
T PRK08573 162 IVE-----ELGAEAVVVKGGHLEGEEAVDVLYHNGTFREFRAPRV---ESGCTHGTGCSFSAAIAAGLAKGLDPEEAIKT 233 (448)
T ss_pred HHH-----HcCCCEEEEecccCCCCceeEEEEECCeEEEEEecCc---CCCCCCChHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 721 3578899999885 344 4456666777776654 78999999999999999999999999999999
Q ss_pred HHHHHhhhhhh
Q 019402 319 GCYAANVVIQR 329 (341)
Q Consensus 319 A~~~aa~~v~~ 329 (341)
|+.+....+++
T Consensus 234 A~~~~~~al~~ 244 (448)
T PRK08573 234 AKKFITMAIKY 244 (448)
T ss_pred HHHHHHHHHHH
Confidence 99999999984
No 61
>PRK12616 pyridoxal kinase; Reviewed
Probab=99.71 E-value=1.7e-16 Score=140.28 Aligned_cols=161 Identities=16% Similarity=0.143 Sum_probs=120.2
Q ss_pred cceEEEEeccccccCHHHHHHHHHHHHhcCC-eEEEeCCcHHH------Hhh-hhHHHHhhCCCCcEEEcCHHHHHHHHh
Q 019402 157 KAKYYYIAGFFLTVSPESIQMVAEHAAAKNK-VFMMNLSAPFI------CEF-FREPQEKALPYMDYVFGNETEARTFAK 228 (341)
Q Consensus 157 ~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~-~v~~d~~~~~~------~~~-~~~~~~~~l~~~dil~~n~~E~~~l~~ 228 (341)
+.|.+.+.- -.+.+.+..+.+.+++.+. ++++||-.... ... .......+++++|++++|..|++.|++
T Consensus 74 ~~~aikiG~---l~s~~~i~~i~~~l~~~~~~~vV~DPV~~~~~g~~~l~~~~~~~l~~~L~~~advitpN~~Ea~~L~g 150 (270)
T PRK12616 74 GVDAMKTGM---LPTVDIIELAADTIKEKQLKNVVIDPVMVCKGANEVLYPEHAEALREQLAPLATVITPNLFEAGQLSG 150 (270)
T ss_pred CCCEEEECC---CCCHHHHHHHHHHHHhcCCCCEEEccceecCCCCcccCHHHHHHHHHHhhccceEecCCHHHHHHHcC
Confidence 356677642 2356788888888887764 58899853110 111 122233488899999999999999987
Q ss_pred h-cCCCCCCHHHHHHHHhcCCCCCCCCccEEEEeeCCCCE------EEEeCCeEEEEecccCCCCcccCCCCcchhhHHH
Q 019402 229 V-HGWETDNVEEIALKISQWPKASGTHKRITVITQGADPV------VVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGG 301 (341)
Q Consensus 229 ~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~------~~~~~~~~~~v~~~~~~~~~vvdttGAGDaf~a~ 301 (341)
. ...+.++.+++++++ .+.|++.||||.|..|. ++++++..++++.+++ +..|++||||+|+|+
T Consensus 151 ~~~~~~~~~~~~aa~~l------~~~G~~~VvVt~G~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~t~GaGD~fsaa 221 (270)
T PRK12616 151 MGEIKTVEQMKEAAKKI------HELGAQYVVITGGGKLKHEKAVDVLYDGETAEVLESEMI---DTPYTHGAGCTFSAA 221 (270)
T ss_pred CCCCCCHHHHHHHHHHH------HHcCCCEEEEeCCCCCcCCceEEEEEECCeEEEEEeeee---CCCCCCcHHHHHHHH
Confidence 4 233334566778888 56788999999998762 5566666666665544 778999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhhhhhh
Q 019402 302 FLSQLVQEKPVEDCVRTGCYAANVVIQR 329 (341)
Q Consensus 302 ~~~~l~~g~~~~~a~~~A~~~aa~~v~~ 329 (341)
|+++|++|+++++|+++|.......++.
T Consensus 222 laa~l~~g~~l~~Av~~A~~~~~~~i~~ 249 (270)
T PRK12616 222 VTAELAKGSEVKEAIYAAKEFITAAIKE 249 (270)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888876
No 62
>PTZ00344 pyridoxal kinase; Provisional
Probab=99.62 E-value=2.1e-14 Score=128.64 Aligned_cols=158 Identities=19% Similarity=0.223 Sum_probs=106.3
Q ss_pred EEEEeccccccCHHHHHHHHHHH---HhcC--CeEEEeCCc----HHH-HhhhhHHHHhhCCCCcEEEcCHHHHHHHHhh
Q 019402 160 YYYIAGFFLTVSPESIQMVAEHA---AAKN--KVFMMNLSA----PFI-CEFFREPQEKALPYMDYVFGNETEARTFAKV 229 (341)
Q Consensus 160 ~v~i~~~~~~~~~~~~~~~~~~~---~~~~--~~v~~d~~~----~~~-~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~ 229 (341)
.++++|+.. +.+.+..+++.+ ++.+ .++++||-- ..| .+...+.+.++++++|++++|++|++.|++.
T Consensus 79 ~~v~sG~l~--~~~~~~~i~~~l~~~~~~~~~~~vv~DPv~~~~g~l~~~~~~~~~~~~ll~~~dii~pN~~E~~~L~g~ 156 (296)
T PTZ00344 79 TYVLTGYIN--SADILREVLATVKEIKELRPKLIFLCDPVMGDDGKLYVKEEVVDAYRELIPYADVITPNQFEASLLSGV 156 (296)
T ss_pred CEEEECCCC--CHHHHHHHHHHHHHHHHhCCCceEEECCccccCCceEeCHHHHHHHHHHhhhCCEEeCCHHHHHHHhCC
Confidence 455556533 355555544444 5555 478889532 112 1223455678899999999999999999875
Q ss_pred cCCCCCCHHHHHHHHhcCCCCCCCCccEEEEe---eCCCC----EEEEe--C----CeEEEEecccCCCCcccCCCCcch
Q 019402 230 HGWETDNVEEIALKISQWPKASGTHKRITVIT---QGADP----VVVAE--D----GKVKLFPVILLPKEKLVDTNGAGD 296 (341)
Q Consensus 230 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~vvvt---~G~~G----~~~~~--~----~~~~~v~~~~~~~~~vvdttGAGD 296 (341)
...+.++..++++.+ ...|++.|||| .|.+| +++.. . ++.+.+..+++ + ++++||||
T Consensus 157 ~~~~~~~~~~~~~~l------~~~g~~~VvVTg~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~---~-~~~~GaGD 226 (296)
T PTZ00344 157 EVKDLSDALEAIDWF------HEQGIPVVVITSFREDEDPTHLRFLLSCRDKDTKNNKRFTGKVPYI---E-GRYTGTGD 226 (296)
T ss_pred CCCCHHHHHHHHHHH------HHhCCCEEEEEeecCCCCCCcEEEEEEeccccCCCceeEEEecccc---C-CCCCCchH
Confidence 432333455677777 45678999999 55556 44432 1 33455554433 4 57799999
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHhhhhhhc
Q 019402 297 AFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQRS 330 (341)
Q Consensus 297 af~a~~~~~l~~g~~~~~a~~~A~~~aa~~v~~~ 330 (341)
+|+|+|++.+.+| ++++|+++|.+....+++..
T Consensus 227 ~f~A~~~a~l~~g-~~~~a~~~A~a~~~~~i~~~ 259 (296)
T PTZ00344 227 LFAALLLAFSHQH-PMDLAVGKAMGVLQDIIKAT 259 (296)
T ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHH
Confidence 9999999888888 99999999999888777653
No 63
>KOG3009 consensus Predicted carbohydrate kinase, contains PfkB domain [General function prediction only]
Probab=99.59 E-value=1.7e-14 Score=128.80 Aligned_cols=244 Identities=19% Similarity=0.225 Sum_probs=161.2
Q ss_pred eEEEecCceeeeEeecCHHHHHHcCCCCCceEEecCcccchHHHHhccCCceeecCchhHHHHHHHHHHhCCCCceEEEE
Q 019402 6 ILLGMGNPLLDISAVVDEEFLKKYDIKLNNAILAEDKHLPMYDELASKENVEYIAGGATQNSIKVAQWMLQIPGATSYIG 85 (341)
Q Consensus 6 ~i~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~~lg~~v~li~ 85 (341)
+=+++|...+|.....|++ -+.+.........+..||.+.|.|.++++ + |.++.||+
T Consensus 342 KPv~vGa~i~D~~~k~d~d--------------------~K~dG~sy~~~~~Qa~GGVarN~A~a~~~-l--g~d~~liS 398 (614)
T KOG3009|consen 342 KPVSVGATIVDFEAKTDED--------------------VKDDGGSYNGQVVQAMGGVARNHADALAR-L--GCDSVLIS 398 (614)
T ss_pred CceeecceEEEeEEeeccc--------------------ccccCCcccchhhhhccchhhhHHHHHHH-h--cCCeeEEE
Confidence 4489999999999999852 11222233356678999999999999998 3 48999999
Q ss_pred eecCCchhHHHHHHHHhcCCceeEeecCCCCcceEEEEEeCCeeceeecccccccCCcccCCCchhHhhhhcceEEEEec
Q 019402 86 CIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVVGGERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYIAG 165 (341)
Q Consensus 86 ~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~ 165 (341)
++|+|..+++.+.. .+. ..+.. +.+.++|++++++
T Consensus 399 avG~d~n~~~~~~~----------------------------~~~------------~~e~~-----~dl~~a~~I~~Ds 433 (614)
T KOG3009|consen 399 AVGDDNNGHFFRQN----------------------------SHK------------IVESN-----EDLLSADFILLDS 433 (614)
T ss_pred EeccCCcchhhhhh----------------------------hhh------------hhhhh-----hhhhcCCEEEEcC
Confidence 99999322111100 000 00111 2233899999988
Q ss_pred cccccCHHHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCC-CCcEEEcCHHHHHHHHhhcC--CC------CCC
Q 019402 166 FFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALP-YMDYVFGNETEARTFAKVHG--WE------TDN 236 (341)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~-~~dil~~n~~E~~~l~~~~~--~~------~~~ 236 (341)
++++..+..+++ ++.+..+|+|+|.+.... ...++-++. .++.+++|..|+-.....+. ++ .+.
T Consensus 434 ---NiS~~~Ma~il~-ak~~k~~V~fEPTd~~k~---~K~fk~l~v~~i~~i~PN~~Ell~a~k~~~v~~nps~~q~~~~ 506 (614)
T KOG3009|consen 434 ---NISVPVMARILE-AKKHKKQVWFEPTDIDKV---KKVFKTLLVGAITAISPNANELLKAAKLCHVSVNPSVIQTADG 506 (614)
T ss_pred ---CCCHHHHHHHHH-hhhccCceEecCCCchhh---hhhhhhcceeeEEeeCCCHHHHHHHhhcCceeeChhhhccchH
Confidence 899999999999 899999999999764421 112222222 47999999999843333222 11 122
Q ss_pred HHHHHHHHhcCCCCCCCCccEEEEeeCCCCEEEEeCC-----eEEEEecccCCCCcccCCCCcchhhHHHHHHHHhcCCC
Q 019402 237 VEEIALKISQWPKASGTHKRITVITQGADPVVVAEDG-----KVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKP 311 (341)
Q Consensus 237 ~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~-----~~~~v~~~~~~~~~vvdttGAGDaf~a~~~~~l~~g~~ 311 (341)
..+.++.+... .......+|+|...+|+++.-.+ +....+++.. .-++++..||||+|.++++.+++++.+
T Consensus 507 ~~~~~~~~~~k---~~~~~s~~I~tl~~~G~l~~yr~k~g~l~~~s~~p~~~-~~n~vsvsgaGdsf~~g~i~~l~~~~~ 582 (614)
T KOG3009|consen 507 VLELIEKEKTK---LLLNTSIFIVTLANKGSLVVYRNKLGQLEFQSLPPPLQ-MNNVVSVSGAGDSFNSGVIAGLAHNKT 582 (614)
T ss_pred HHHHHHHHHHH---hhcccceEEEEeccCceEEEecCCCCCcccccCCCccc-ccceeEeccCCcccccceeehhhcCcc
Confidence 22233333221 23445679999999999774222 1223333322 337899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhh
Q 019402 312 VEDCVRTGCYAANVVIQ 328 (341)
Q Consensus 312 ~~~a~~~A~~~aa~~v~ 328 (341)
+.+++.-+..++....+
T Consensus 583 v~es~~gg~~~~ralls 599 (614)
T KOG3009|consen 583 VVESLQGGQECARALLS 599 (614)
T ss_pred hHhhccccHHHHHHHHh
Confidence 99999999555544433
No 64
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=99.57 E-value=4.6e-14 Score=135.32 Aligned_cols=162 Identities=13% Similarity=0.102 Sum_probs=120.3
Q ss_pred cceEEEEeccccccCHHHHHHHHHHHHhcCCe-EEEeCCc------HHHHhhhhHHH-HhhCCCCcEEEcCHHHHHHHHh
Q 019402 157 KAKYYYIAGFFLTVSPESIQMVAEHAAAKNKV-FMMNLSA------PFICEFFREPQ-EKALPYMDYVFGNETEARTFAK 228 (341)
Q Consensus 157 ~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~-v~~d~~~------~~~~~~~~~~~-~~~l~~~dil~~n~~E~~~l~~ 228 (341)
+.+.+.+.- -.+.+.+..+++.+++.+.+ +++||-. ........+.+ .++++++|+++||..|++.|++
T Consensus 78 ~~~aik~G~---l~~~~~i~~i~~~l~~~~~~~vVlDPV~~~~~G~~l~~~~~~~~l~~~Ll~~adiitPN~~Ea~~L~g 154 (502)
T PLN02898 78 PVDVVKTGM---LPSAEIVKVLCQALKEFPVKALVVDPVMVSTSGDVLAGPSILSALREELLPLATIVTPNVKEASALLG 154 (502)
T ss_pred CCCEEEECC---cCCHHHHHHHHHHHHhCCCCCEEEccccccCCCCccCCHHHHHHHHHhhhccCeEEcCCHHHHHHHhC
Confidence 356666642 23578888899988888775 8999832 11111122223 4688999999999999999986
Q ss_pred hc-CCCCCCHHHHHHHHhcCCCCCCCCccEEEEeeCCCC------EEEEeCCeEEEEecccCCCCcccCCCCcchhhHHH
Q 019402 229 VH-GWETDNVEEIALKISQWPKASGTHKRITVITQGADP------VVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGG 301 (341)
Q Consensus 229 ~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G------~~~~~~~~~~~v~~~~~~~~~vvdttGAGDaf~a~ 301 (341)
.. ..+.++..++++.+ .+.|++.||||.|..+ .++++++..++++.+++ +.+|++|+||+|+|+
T Consensus 155 ~~~~~~~~~~~~~a~~l------~~~G~~~VvItgg~~~~~~~~~~~l~~~~~~~~~~~~~i---~~~~t~GaGD~fsaa 225 (502)
T PLN02898 155 GDPLETVADMRSAAKEL------HKLGPRYVLVKGGHLPDSLDAVDVLYDGTEFHELRSSRI---KTRNTHGTGCTLASC 225 (502)
T ss_pred CCCCCCHHHHHHHHHHH------HhcCCCEEEEcCCCCCCCCcceEEEEcCCeEEEEeccee---CCCCCCchhhhHHHH
Confidence 32 22234566777887 5678899999998753 35666666666665544 678999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhhhhhhc
Q 019402 302 FLSQLVQEKPVEDCVRTGCYAANVVIQRS 330 (341)
Q Consensus 302 ~~~~l~~g~~~~~a~~~A~~~aa~~v~~~ 330 (341)
|++++++|+++++|+++|..+....+...
T Consensus 226 iaa~l~~G~~l~eAv~~A~~~v~~ai~~~ 254 (502)
T PLN02898 226 IAAELAKGSDMLSAVKVAKRYVETALEYS 254 (502)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999864
No 65
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=99.57 E-value=6.4e-14 Score=122.96 Aligned_cols=162 Identities=17% Similarity=0.062 Sum_probs=115.3
Q ss_pred hhhhcceEEEEeccccccCH-HHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCCCCcEEEcCHHHHHHHHhhcC
Q 019402 153 SIVEKAKYYYIAGFFLTVSP-ESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHG 231 (341)
Q Consensus 153 ~~~~~~~~v~i~~~~~~~~~-~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~ 231 (341)
..+.+.|++++.+. ++. +.+..+++.+++.+.++++|+.+......... . .+.+..++++||..|++.|++...
T Consensus 73 ~~~~~~d~v~ig~g---l~~~~~~~~i~~~~~~~~~pvVlDa~~~~~~~~~~~-~-~~~~~~~iltPn~~E~~~L~g~~~ 147 (254)
T cd01171 73 ELLERADAVVIGPG---LGRDEEAAEILEKALAKDKPLVLDADALNLLADEPS-L-IKRYGPVVLTPHPGEFARLLGALV 147 (254)
T ss_pred hhhccCCEEEEecC---CCCCHHHHHHHHHHHhcCCCEEEEcHHHHHhhcChh-h-hccCCCEEECCCHHHHHHHhCCCh
Confidence 34567899999762 333 77888899999889999999875432111100 1 245678999999999999987532
Q ss_pred CC-CCCHHHHHHHHhcCCCCCCCCccEEEEeeCCCCEEEEeCCeEEEEecccCCCCcccCCCCcchhhHHHHHHHHhcCC
Q 019402 232 WE-TDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEK 310 (341)
Q Consensus 232 ~~-~~~~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~v~~~~~~~~~vvdttGAGDaf~a~~~~~l~~g~ 310 (341)
.+ .++..++++++. +.+ ..+|+..|. +.++++++..++++.... +.++++|+||+|+|.+.+.+++|+
T Consensus 148 ~~~~~~~~~~a~~l~------~~~-~~~vvlkG~-~~~i~~~~~~~~~~~~~~---~~~~~~GaGD~lag~iaa~la~g~ 216 (254)
T cd01171 148 EEIQADRLAAAREAA------AKL-GATVVLKGA-VTVIADPDGRVYVNPTGN---PGLATGGSGDVLAGIIAALLAQGL 216 (254)
T ss_pred hhhhhHHHHHHHHHH------HHc-CcEEEEcCC-CCEEECCCCcEEEECCCC---cccccCchHHHHHHHHHHHHHcCC
Confidence 22 223456677773 333 345666675 666666544455554433 788999999999888888888999
Q ss_pred CHHHHHHHHHHHHhhhhhhc
Q 019402 311 PVEDCVRTGCYAANVVIQRS 330 (341)
Q Consensus 311 ~~~~a~~~A~~~aa~~v~~~ 330 (341)
++++|+++|+.+.+.+.+..
T Consensus 217 ~~~eA~~~A~~~~~~a~~~~ 236 (254)
T cd01171 217 SPLEAAALAVYLHGLAGDLA 236 (254)
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988764
No 66
>PTZ00347 phosphomethylpyrimidine kinase; Provisional
Probab=99.56 E-value=8.9e-14 Score=133.43 Aligned_cols=163 Identities=15% Similarity=0.168 Sum_probs=115.7
Q ss_pred hhhcceEEEE-eccccccCHHHHHHHHHHHHhcCCeEEEeCCcH------HHHhhh----hHHH-HhhCCCCcEEEcCHH
Q 019402 154 IVEKAKYYYI-AGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAP------FICEFF----REPQ-EKALPYMDYVFGNET 221 (341)
Q Consensus 154 ~~~~~~~v~i-~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~------~~~~~~----~~~~-~~~l~~~dil~~n~~ 221 (341)
.+.+.++.++ .|+ -.+.+.+..+++.++ +.++++||-.. .+.... .+.+ .++++.+|++++|..
T Consensus 294 l~~d~~~~~Ik~G~--l~s~e~i~~i~~~l~--~~~vV~DPV~~~~~G~~l~~~~~~~~~~~~~~~~Ll~~advitPN~~ 369 (504)
T PTZ00347 294 VMSDFNISVVKLGL--VPTARQLEIVIEKLK--NLPMVVDPVLVATSGDDLVAQKNADDVLAMYKERIFPMATIITPNIP 369 (504)
T ss_pred HHhCCCCCEEEECC--cCCHHHHHHHHHHhc--CCCEEEcccceeCCCCcccchhHHHHHHHHHHHhccCcceEEeCCHH
Confidence 3444444444 443 235677888878775 56789997321 111111 1222 368899999999999
Q ss_pred HHHHHHhhc-CCCCCCHHHHHHHHhcCCCCCCCCccEEEEeeCCCC-------EEEEeC--CeEEEEecccCCCCcccCC
Q 019402 222 EARTFAKVH-GWETDNVEEIALKISQWPKASGTHKRITVITQGADP-------VVVAED--GKVKLFPVILLPKEKLVDT 291 (341)
Q Consensus 222 E~~~l~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G-------~~~~~~--~~~~~v~~~~~~~~~vvdt 291 (341)
|++.|++.. ..+.++..++++.+ .+.|++.||||.|..| .+++.+ +..++++.+++ +++|+
T Consensus 370 Ea~~L~g~~~~~~~~~~~~aa~~l------~~~G~~~VvVtgg~~~~~~~~~~~~l~~~~~~~~~~~~~~~i---~~~~~ 440 (504)
T PTZ00347 370 EAERILGRKEITGVYEARAAAQAL------AQYGSRYVLVKGGHDLIDPEACRDVLYDREKDRFYEFTANRI---ATINT 440 (504)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHH------HhcCCCEEEEeCCCCCcCCCcceEEEEcCCCCeEEEEEeeeE---CCCCC
Confidence 999998752 22334566777777 5678999999999863 344442 35566776544 78899
Q ss_pred CCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhhhhhh
Q 019402 292 NGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQR 329 (341)
Q Consensus 292 tGAGDaf~a~~~~~l~~g~~~~~a~~~A~~~aa~~v~~ 329 (341)
+|+||+|+|+|++++++|+++++|+++|.+.-...+.+
T Consensus 441 ~GaGD~fsaaiaa~la~G~~l~eAv~~A~~~v~~~i~~ 478 (504)
T PTZ00347 441 HGTGCTLASAISSFLARGYTVPDAVERAIGYVHEAIVR 478 (504)
T ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999998888777765
No 67
>PF08543 Phos_pyr_kin: Phosphomethylpyrimidine kinase; InterPro: IPR013749 This enzyme 2.7.4.7 from EC is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 2DDW_B 2DDO_B 2DDM_A 3IBQ_A 3H74_A 3HYO_A 1UB0_A 1VI9_D 1TD2_B 2PHP_D ....
Probab=99.50 E-value=2.6e-13 Score=118.24 Aligned_cols=161 Identities=19% Similarity=0.182 Sum_probs=114.8
Q ss_pred cceEEEEeccccccCHHHHHHHHHHHHhcCCeEEEeCCcH------HHHhhhhHHHH-hhCCCCcEEEcCHHHHHHHHhh
Q 019402 157 KAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAP------FICEFFREPQE-KALPYMDYVFGNETEARTFAKV 229 (341)
Q Consensus 157 ~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~------~~~~~~~~~~~-~~l~~~dil~~n~~E~~~l~~~ 229 (341)
+.|.+.++- -.+.+.+..+.+.++..+.++++||--. ...+...+.++ ++++.+|++.||..|++.|++.
T Consensus 60 ~~~aikiG~---l~~~~~v~~i~~~l~~~~~~vV~DPVm~~~~g~~~~~~~~~~~~~~~Llp~AdiitPN~~Ea~~L~g~ 136 (246)
T PF08543_consen 60 KFDAIKIGY---LGSAEQVEIIADFLKKPKIPVVLDPVMGDSGGYYYVDPDVVEAMREELLPLADIITPNLTEAELLTGR 136 (246)
T ss_dssp C-SEEEE-S----SSHHHHHHHHHHHHHTTTEEEEE---EETTTECTSSHHHHHHHHHHCGGG-SEEE-BHHHHHHHHTS
T ss_pred cccEEEEcc---cCCchhhhhHHHHHhccCCCEEEecccccCCCCcCCCHHHHHHHHhccCCcCeEEeCCHHHHHHHhCC
Confidence 668888753 2356777777777777778999998321 11122233344 4999999999999999999986
Q ss_pred cCCCCCCHHHHHHHHhcCCCCCCCCccEEEEeeCCC---C----EEEEeCCeEEEEecccCCCCcccCCCCcchhhHHHH
Q 019402 230 HGWETDNVEEIALKISQWPKASGTHKRITVITQGAD---P----VVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGF 302 (341)
Q Consensus 230 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~vvvt~G~~---G----~~~~~~~~~~~v~~~~~~~~~vvdttGAGDaf~a~~ 302 (341)
...+.++..+++++| .+.|++.|+||-+.. . .+++.+++.+.++.+.. +..+..|.||.|+|++
T Consensus 137 ~i~~~~~~~~~~~~l------~~~G~~~VvItg~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~GTGd~fss~l 207 (246)
T PF08543_consen 137 EINSEEDIEEAAKAL------LALGPKNVVITGGHLDGDEGIITDVLYDGGEFYWLSSPRI---PTGSFHGTGDLFSSAL 207 (246)
T ss_dssp --SSHHHHHHHHHHH------HHTS-SEEEEEEEEGGSSCEEEEEEEETTSEEEEEEEEEE---CTSGCTTHHHHHHHHH
T ss_pred CCCChHhHHHHHHHH------HHhCCceEEEeeeccccccccccceeeeccceeecceeEE---cCCCCCCchhHHHHHH
Confidence 555666778888888 567899999998763 2 34456677776665544 3467899999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhhhhhh
Q 019402 303 LSQLVQEKPVEDCVRTGCYAANVVIQR 329 (341)
Q Consensus 303 ~~~l~~g~~~~~a~~~A~~~aa~~v~~ 329 (341)
++.|++|+++++|++.|...-...+++
T Consensus 208 aa~l~~g~~l~~Av~~A~~~v~~~i~~ 234 (246)
T PF08543_consen 208 AAFLAKGYSLEEAVEKAKNFVRRAIKN 234 (246)
T ss_dssp HHHHHTTSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888877764
No 68
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=99.50 E-value=5.9e-13 Score=113.73 Aligned_cols=149 Identities=20% Similarity=0.228 Sum_probs=119.5
Q ss_pred CHHHHHHHHHHHHhcC-CeEEEeCC------cHHHHhhhhH-HHHhhCCCCcEEEcCHHHHHHHHhh-cCCCCCCHHHHH
Q 019402 171 SPESIQMVAEHAAAKN-KVFMMNLS------APFICEFFRE-PQEKALPYMDYVFGNETEARTFAKV-HGWETDNVEEIA 241 (341)
Q Consensus 171 ~~~~~~~~~~~~~~~~-~~v~~d~~------~~~~~~~~~~-~~~~~l~~~dil~~n~~E~~~l~~~-~~~~~~~~~~~~ 241 (341)
+++.+..+.+.+++.+ .++++||- .+...++..+ ..++++++++++.||..|++.|++. ...+.+++.+++
T Consensus 83 ~~eiie~va~~l~~~~~~~vV~DPVmvaksG~~Ll~~~a~~~l~~~LlP~a~vvTPNl~EA~~L~g~~~i~~~~d~~~a~ 162 (263)
T COG0351 83 SAEIIEVVAEKLKKYGIGPVVLDPVMVAKSGDPLLDEEAVEALREELLPLATVVTPNLPEAEALSGLPKIKTEEDMKEAA 162 (263)
T ss_pred CHHHHHHHHHHHHhcCCCcEEECceEEEcCCCcccChHHHHHHHHHhhccCeEecCCHHHHHHHcCCCccCCHHHHHHHH
Confidence 5788999999999998 77999982 2222233333 3448999999999999999999994 656677778887
Q ss_pred HHHhcCCCCCCCCccEEEEeeCCCC----EEEEeCCeEEEEecccCCCCcccCCCCcchhhHHHHHHHHhcCCCHHHHHH
Q 019402 242 LKISQWPKASGTHKRITVITQGADP----VVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVR 317 (341)
Q Consensus 242 ~~l~~~~~~~~~~~~~vvvt~G~~G----~~~~~~~~~~~v~~~~~~~~~vvdttGAGDaf~a~~~~~l~~g~~~~~a~~ 317 (341)
+.+ .+.|++.|+|+-|... -++|.++..+.++.+.+ +-.++-|+|++|+|++.+.|++|.++++|++
T Consensus 163 ~~i------~~~g~~~VliKGGH~~~~~~D~l~~~~~~~~f~~~ri---~t~~tHGTGCTlSaAIaa~LA~G~~l~~AV~ 233 (263)
T COG0351 163 KLL------HELGAKAVLIKGGHLEGEAVDVLYDGGSFYTFEAPRI---PTKNTHGTGCTLSAAIAANLAKGLSLEEAVK 233 (263)
T ss_pred HHH------HHhCCCEEEEcCCCCCCCceeEEEcCCceEEEecccc---CCCCCCCccHHHHHHHHHHHHcCCCHHHHHH
Confidence 777 6778999999987633 35566666666666544 6778999999999999999999999999999
Q ss_pred HHHHHHhhhhh
Q 019402 318 TGCYAANVVIQ 328 (341)
Q Consensus 318 ~A~~~aa~~v~ 328 (341)
.|-..-...++
T Consensus 234 ~Ak~fv~~AI~ 244 (263)
T COG0351 234 KAKEFVTRAIR 244 (263)
T ss_pred HHHHHHHHHHh
Confidence 99998888887
No 69
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=99.48 E-value=3.6e-13 Score=134.51 Aligned_cols=161 Identities=16% Similarity=0.166 Sum_probs=116.7
Q ss_pred ceEEEEeccccccCHHHHHHHHHHHHhc-CCeEEEeCCcH------HHHhhhhHHHHhhCCCCcEEEcCHHHHHHHHhhc
Q 019402 158 AKYYYIAGFFLTVSPESIQMVAEHAAAK-NKVFMMNLSAP------FICEFFREPQEKALPYMDYVFGNETEARTFAKVH 230 (341)
Q Consensus 158 ~~~v~i~~~~~~~~~~~~~~~~~~~~~~-~~~v~~d~~~~------~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~ 230 (341)
.+.+-++- -.+.+.+..+++.+++. +.++++||... .+.....+.+.++++.+|++++|..|++.|++..
T Consensus 311 ~~aiKiGm---L~s~e~v~~i~~~l~~~~~~~vVlDPV~~~~sG~~l~~~~~~~~l~~Llp~adlItPN~~Ea~~L~g~~ 387 (755)
T PRK09517 311 VDAVKLGM---LGSADTVDLVASWLGSHEHGPVVLDPVMVATSGDRLLDADATEALRRLAVHVDVVTPNIPELAVLCGEA 387 (755)
T ss_pred CCEEEECC---CCCHHHHHHHHHHHHhCCCCCEEEecccccCCCCCCCCHHHHHHHHHHhCcccCccCCHHHHHHHhCCC
Confidence 46666642 23567888888888874 46699998421 1111223445679999999999999999998742
Q ss_pred -CCCCCCHHHHHHHHhcCCCCCCCCccEEEEeeCC------CCEEEEeCCeEEEEecccCCCCcccCCCCcchhhHHHHH
Q 019402 231 -GWETDNVEEIALKISQWPKASGTHKRITVITQGA------DPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFL 303 (341)
Q Consensus 231 -~~~~~~~~~~~~~l~~~~~~~~~~~~~vvvt~G~------~G~~~~~~~~~~~v~~~~~~~~~vvdttGAGDaf~a~~~ 303 (341)
..+.++..++++.+ .+.+...||||.|. .|+++..++..++++.+++ +.+|++|+||+|+|+|+
T Consensus 388 ~~~~~~d~~~aa~~L------~~~~g~~VVVkgGh~~~~~~~~~l~~~~~~~~~~~~~~v---~~~~t~GaGDtfsaaia 458 (755)
T PRK09517 388 PAITMDEAIAQARGF------ARTHGTIVIVKGGHLTGDLADNAVVRPDGSVHQVENPRV---NTTNSHGTGCSLSAALA 458 (755)
T ss_pred CCCCHHHHHHHHHHH------HHhcCCEEEEcCCcCCCCccceEEEeCCCeEEEEeeccc---CCCCCcChHHHHHHHHH
Confidence 12233455667777 33223479999883 5677666666667776554 78999999999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHhhhhhhc
Q 019402 304 SQLVQEKPVEDCVRTGCYAANVVIQRS 330 (341)
Q Consensus 304 ~~l~~g~~~~~a~~~A~~~aa~~v~~~ 330 (341)
++|++|+++++|+++|...-...+...
T Consensus 459 a~La~G~sl~eAv~~A~~~v~~~i~~a 485 (755)
T PRK09517 459 TLIAAGESVEKALEWATRWLNEALRHA 485 (755)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999888888663
No 70
>cd01170 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz. A reaction that allows cells to recycle Thz into the thiamine biosynthesis pathway, as an alternative to its synthesis from cysteine, tyrosine and 1-deoxy-D-xylulose-5-phosphate.
Probab=99.48 E-value=1.2e-12 Score=113.55 Aligned_cols=167 Identities=14% Similarity=0.105 Sum_probs=114.7
Q ss_pred hHhhhhcceEEEEecccc-ccCHHHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCC--CCcEEEcCHHHHHHHH
Q 019402 151 IWSIVEKAKYYYIAGFFL-TVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALP--YMDYVFGNETEARTFA 227 (341)
Q Consensus 151 ~~~~~~~~~~v~i~~~~~-~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~--~~dil~~n~~E~~~l~ 227 (341)
..+.++++|++++..-.+ +...+.+..+++.+++.++++++|+..........+.+.+++. .+|++++|..|+..|+
T Consensus 43 ~~~~l~~~d~vvi~~G~l~~~~~~~i~~~~~~~~~~~~pvVlDp~~~~~~~~~~~~~~~ll~~~~~~ilTPN~~Ea~~L~ 122 (242)
T cd01170 43 VEELAKIAGALVINIGTLTSEQIEAMLKAGKAANQLGKPVVLDPVGVGATSFRTEVAKELLAEGQPTVIRGNASEIAALA 122 (242)
T ss_pred HHHHHHHcCcEEEeCCCCChHHHHHHHHHHHHHHhcCCCEEEcccccCcchhHHHHHHHHHhcCCCeEEcCCHHHHHHHh
Confidence 446788999999963221 1122556666677888899999999632211111122344555 4999999999999999
Q ss_pred hhcCCC---------CCCHHHHHHHHhcCCCCCCCCccEEEEeeCCCCEEEEeCCeEEEEecccCCCCcccCCCCcchhh
Q 019402 228 KVHGWE---------TDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAF 298 (341)
Q Consensus 228 ~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~v~~~~~~~~~vvdttGAGDaf 298 (341)
+..... .++..++++++. ..+...|++| |.... ++++++.++++..+. .+.++.|+||++
T Consensus 123 g~~~~~~~~~~~~~~~~~~~~aa~~l~------~~~~~~Vllk-G~~d~-l~~~~~~~~~~~~~~---~~~~v~GtGdtL 191 (242)
T cd01170 123 GLTGLGKGVDSSSSDEEDALELAKALA------RKYGAVVVVT-GEVDY-ITDGERVVVVKNGHP---LLTKITGTGCLL 191 (242)
T ss_pred CCCCCcCcccCCCcchHHHHHHHHHHH------HHhCCEEEEE-CCCcE-EEECCEEEEEeCCCc---cccCCCchHHHH
Confidence 754321 235667777773 3334568888 66554 556777777764322 345568999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhhhhh
Q 019402 299 VGGFLSQLVQEKPVEDCVRTGCYAANVVIQ 328 (341)
Q Consensus 299 ~a~~~~~l~~g~~~~~a~~~A~~~aa~~v~ 328 (341)
+|++.+.+++|.++.+|+..|...-+..+.
T Consensus 192 a~aiAa~LA~g~~~~~A~~~A~~~~~~a~~ 221 (242)
T cd01170 192 GAVIAAFLAVGDDPLEAAVSAVLVYGIAGE 221 (242)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999776666654
No 71
>PRK14713 multifunctional hydroxymethylpyrimidine phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine hydrolase; Provisional
Probab=99.45 E-value=8.1e-13 Score=127.33 Aligned_cols=158 Identities=15% Similarity=0.109 Sum_probs=106.9
Q ss_pred ceEEEEeccccccCHHHHHHHHHHHHhcC-CeEEEeCCc------HHHHhhhhHHHHhhCCCCcEEEcCHHHHHHHHhhc
Q 019402 158 AKYYYIAGFFLTVSPESIQMVAEHAAAKN-KVFMMNLSA------PFICEFFREPQEKALPYMDYVFGNETEARTFAKVH 230 (341)
Q Consensus 158 ~~~v~i~~~~~~~~~~~~~~~~~~~~~~~-~~v~~d~~~------~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~ 230 (341)
.+.+.++- -.+.+.+..+.+.+++.. .++++||-- ..+.+...+.++++++++|++++|..|++.|++..
T Consensus 99 ~~aikiG~---l~s~~~i~~v~~~l~~~~~~~vVlDPv~~~~~G~~l~~~~~~~~~~~Ll~~advItPN~~Ea~~Ltg~~ 175 (530)
T PRK14713 99 VDAVKIGM---LGDAEVIDAVRTWLAEHRPPVVVLDPVMVATSGDRLLEEDAEAALRELVPRADLITPNLPELAVLLGEP 175 (530)
T ss_pred CCEEEECC---cCCHHHHHHHHHHHHhCCCCCEEECCcccCCCCCCCCCHHHHHHHHHHhhhhheecCChHHHHHHhCCC
Confidence 46666632 124455555555555543 358889832 11222234556779999999999999999998743
Q ss_pred C-CCCCCHHHHHHHHhcCCCCCCCCccEEEEeeCCC------CEEEEeCCeEEEEecccCCCCcccCCCCcchhhHHHHH
Q 019402 231 G-WETDNVEEIALKISQWPKASGTHKRITVITQGAD------PVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFL 303 (341)
Q Consensus 231 ~-~~~~~~~~~~~~l~~~~~~~~~~~~~vvvt~G~~------G~~~~~~~~~~~v~~~~~~~~~vvdttGAGDaf~a~~~ 303 (341)
. .+.++..++++++ ...+...||||.|.. ++++..+++.++++.+++ +.+|++|+||+|+|+|+
T Consensus 176 ~~~~~~d~~~aa~~L------~~~~g~~VvItgG~~~~~~~~d~~~~~~~~~~~~~~~~v---~~~~t~GaGD~fsaala 246 (530)
T PRK14713 176 PATTWEEALAQARRL------AAETGTTVLVKGGHLDGQRAPDALVGPDGAVTEVPGPRV---DTRNTHGTGCSLSSALA 246 (530)
T ss_pred CCCCHHHHHHHHHHH------HHhcCCEEEEeCCCCCCCcceEEEEcCCCeEEEEeeeee---CCCCCCcHHHHHHHHHH
Confidence 2 1233455566777 333345799998863 234444444666665544 78899999999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHhhhh
Q 019402 304 SQLVQEKPVEDCVRTGCYAANVVI 327 (341)
Q Consensus 304 ~~l~~g~~~~~a~~~A~~~aa~~v 327 (341)
++|++|+++++|+++|...-...+
T Consensus 247 a~La~G~~l~eAv~~A~~~v~~~i 270 (530)
T PRK14713 247 TRLGRGGDWAAALRWATAWLHGAI 270 (530)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999998443333
No 72
>PLN02978 pyridoxal kinase
Probab=99.44 E-value=2.2e-12 Score=115.92 Aligned_cols=162 Identities=11% Similarity=0.060 Sum_probs=108.1
Q ss_pred ceEEEEeccccccCHHHHHHHHHHHHh--cCCeEEEeCCcH----HH-HhhhhHHHH-hhCCCCcEEEcCHHHHHHHHhh
Q 019402 158 AKYYYIAGFFLTVSPESIQMVAEHAAA--KNKVFMMNLSAP----FI-CEFFREPQE-KALPYMDYVFGNETEARTFAKV 229 (341)
Q Consensus 158 ~~~v~i~~~~~~~~~~~~~~~~~~~~~--~~~~v~~d~~~~----~~-~~~~~~~~~-~~l~~~dil~~n~~E~~~l~~~ 229 (341)
.|.+.+.-.......+.+.++++.+++ .+.++++||... .+ .....+.++ .+++++|++++|..|++.|++.
T Consensus 87 ~~ai~~G~l~s~~~~~~v~~~l~~~~~~~~~~~vvlDPvm~d~G~l~~~~~~~~~~~~~ll~~adiitPN~~Ea~~L~g~ 166 (308)
T PLN02978 87 YTHLLTGYIGSVSFLRTVLRVVKKLRSVNPNLTYVCDPVLGDEGKLYVPPELVPVYREKVVPLATMLTPNQFEAEQLTGI 166 (308)
T ss_pred cCEEEecccCCHHHHHHHHHHHHHHHHhCCCCeEEECCcccCCCCccCChhHHHHHHHHHHhhCCeeccCHHHHHHHhCC
Confidence 566655422122234667777787776 346788898521 11 111223344 5899999999999999999875
Q ss_pred cCCCCCCHHHHHHHHhcCCCCCCCCccEEEEeeCC-CCEEE-Ee--------CCeEEEEecccCCCCcccCCCCcchhhH
Q 019402 230 HGWETDNVEEIALKISQWPKASGTHKRITVITQGA-DPVVV-AE--------DGKVKLFPVILLPKEKLVDTNGAGDAFV 299 (341)
Q Consensus 230 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~vvvt~G~-~G~~~-~~--------~~~~~~v~~~~~~~~~vvdttGAGDaf~ 299 (341)
...+.++..++++++ ...|++.||||.+. +|... .. .++.+++..+++ +.. ++|+||+|+
T Consensus 167 ~~~~~~~~~~a~~~l------~~~g~~~VVITs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~~-~~GtGD~fs 236 (308)
T PLN02978 167 RIVTEEDAREACAIL------HAAGPSKVVITSIDIDGKLLLVGSHRKEKGARPEQFKIVIPKI---PAY-FTGTGDLMA 236 (308)
T ss_pred CCCCHHHHHHHHHHH------HHhCCCEEEEEEecCCCCEEEEEecccccCCCCceEEEEccCC---CCC-CCCchHHHH
Confidence 433333456777777 55688899998754 34332 21 134556665544 444 589999999
Q ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHhhhhhh
Q 019402 300 GGFLSQLVQE-KPVEDCVRTGCYAANVVIQR 329 (341)
Q Consensus 300 a~~~~~l~~g-~~~~~a~~~A~~~aa~~v~~ 329 (341)
|++++.+.+| .++++|++.|...-...++.
T Consensus 237 A~laa~l~~g~~~l~~A~~~A~~~v~~~i~~ 267 (308)
T PLN02978 237 ALLLGWSHKYPDNLDKAAELAVSSLQAVLRR 267 (308)
T ss_pred HHHHHHHhcCCcCHHHHHHHHHHHHHHHHHH
Confidence 9888888888 79999999999888777766
No 73
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=99.41 E-value=1.1e-11 Score=109.66 Aligned_cols=161 Identities=16% Similarity=0.101 Sum_probs=112.2
Q ss_pred hhhhcceEEEEeccccccCHHHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCCCCcEEEcCHHHHHHHHhhcCC
Q 019402 153 SIVEKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGW 232 (341)
Q Consensus 153 ~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~ 232 (341)
+.+..+|++++++... +.+.+..+++.+++.+.++++|+.+...... ........++++||..|++.|++....
T Consensus 88 ~~~~~~davvig~Gl~--~~~~~~~l~~~~~~~~~pvVlDa~g~~l~~~----~~~~~~~~~vItPN~~El~~L~g~~~~ 161 (272)
T TIGR00196 88 ELLERYDVVVIGPGLG--QDPSFKKAVEEVLELDKPVVLDADALNLLTY----DKPKREGEVILTPHPGEFKRLLGLVNE 161 (272)
T ss_pred hhhccCCEEEEcCCCC--CCHHHHHHHHHHHhcCCCEEEEhHHHHHHhh----cccccCCCEEECCCHHHHHHHhCCchh
Confidence 4457889999976321 2234788888899899999999875542111 100134689999999999999985433
Q ss_pred CCCCHHHHHHHHhcCCCCCCCCccEEEEeeCCCCEEEEeCCeEEEEecccCCCCcccCCCCcchhhHHHHHHHHhcCCCH
Q 019402 233 ETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPV 312 (341)
Q Consensus 233 ~~~~~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~v~~~~~~~~~vvdttGAGDaf~a~~~~~l~~g~~~ 312 (341)
+.++..++++++. +. ...+|++.|..+.++..++..+..+ .+. ...+++|+||+++|.+.+.+++|.++
T Consensus 162 ~~~~~~~aa~~l~------~~-~~~vVv~kG~~~~i~~~~~~~~~~~-~~~---~~~~~~GaGD~lag~iaa~la~g~~~ 230 (272)
T TIGR00196 162 IQGDRLEAAQDIA------QK-LQAVVVLKGAADVIAAPDGDLWINK-TGN---AALAKGGTGDVLAGLIGGLLAQNLDP 230 (272)
T ss_pred hhhhHHHHHHHHH------HH-hCCEEEEcCCCCEEEcCCCeEEEEC-CCC---CccCCCCchHHHHHHHHHHHhCCCCH
Confidence 4456667777773 22 3458888899998776555555543 223 66789999999666666666799999
Q ss_pred HHHHHHH---HHHHhhhhhhc
Q 019402 313 EDCVRTG---CYAANVVIQRS 330 (341)
Q Consensus 313 ~~a~~~A---~~~aa~~v~~~ 330 (341)
.+|+..| +..|+..+.+.
T Consensus 231 ~~A~~~a~~~~~~a~~~~~~~ 251 (272)
T TIGR00196 231 FDAACNAAFAHGLAGDLALKN 251 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 9999777 77777665443
No 74
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=99.27 E-value=7e-11 Score=101.62 Aligned_cols=164 Identities=16% Similarity=0.184 Sum_probs=118.7
Q ss_pred hhhcceEEEEeccc-cccCHHHHHHHHHHHHhcCCe--EEEeCC-----cHHHHhhhhHHH-HhhCCCCcEEEcCHHHHH
Q 019402 154 IVEKAKYYYIAGFF-LTVSPESIQMVAEHAAAKNKV--FMMNLS-----APFICEFFREPQ-EKALPYMDYVFGNETEAR 224 (341)
Q Consensus 154 ~~~~~~~v~i~~~~-~~~~~~~~~~~~~~~~~~~~~--v~~d~~-----~~~~~~~~~~~~-~~~l~~~dil~~n~~E~~ 224 (341)
.+.++|.++. |+. .......+..+++..|+.+.. +.+||- .-+......+.. .++++.+|++.||.-|++
T Consensus 70 ~~~~~davlt-GYlgs~~qv~~i~~~v~~vk~~~P~~~~l~DPVMGD~gglYV~~~~~~~~~~~lip~AdiiTPN~fELe 148 (281)
T COG2240 70 KLGECDAVLT-GYLGSAEQVRAIAGIVKAVKEANPNALYLCDPVMGDPGGLYVAPEVAEAYRDELLPLADIITPNIFELE 148 (281)
T ss_pred cccccCEEEE-ccCCCHHHHHHHHHHHHHHhccCCCeEEEeCCcccCCCceeeccchHHHHHHhhcchhhEeCCCHHHHH
Confidence 5677888875 443 233346778888888887544 677772 111112223333 379999999999999999
Q ss_pred HHHhhcCCCCCCHHHHHHHHhcCCCCCCCCccEEEEeeCCC-----CEEEEeCC---eEEEEecccCCCCcccCCCCcch
Q 019402 225 TFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGAD-----PVVVAEDG---KVKLFPVILLPKEKLVDTNGAGD 296 (341)
Q Consensus 225 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vvvt~G~~-----G~~~~~~~---~~~~v~~~~~~~~~vvdttGAGD 296 (341)
.|++....+.++..++++.| .+.|+++|+||.-.. |.+++... ..+|+. +.++ .+.+|.||
T Consensus 149 ~Ltg~~~~~~~da~~aa~~L------~~~gp~~vlVTS~~~~~~~~~~~~~~~~~~~~~~h~~-~~v~----~~~~GtGD 217 (281)
T COG2240 149 ILTGKPLNTLDDAVKAARKL------GADGPKIVLVTSLSRAGMSTGNFEMLGKSAELAWHIS-PLVP----FIPNGTGD 217 (281)
T ss_pred HHhCCCCCCHHHHHHHHHHH------hhcCCCEEEEecccccCCCCceEEEeccchhhhhhhh-hcCC----CCCCCchH
Confidence 99998877778888899988 667899999996443 45555433 234443 3332 44999999
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHhhhhhh
Q 019402 297 AFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQR 329 (341)
Q Consensus 297 af~a~~~~~l~~g~~~~~a~~~A~~~aa~~v~~ 329 (341)
.|+|.|++++++|.++++|+..+..+-...++.
T Consensus 218 L~sallla~lL~g~~~~~al~~~~~~V~evl~~ 250 (281)
T COG2240 218 LFSALLLARLLEGLSLTQALERATAAVYEVLQE 250 (281)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999887777663
No 75
>PTZ00493 phosphomethylpyrimidine kinase; Provisional
Probab=99.13 E-value=1.3e-09 Score=97.12 Aligned_cols=160 Identities=11% Similarity=0.051 Sum_probs=105.7
Q ss_pred ceEEEEeccccccCHHHHHHHHHHHHhcC------CeEEEeCC-----cHHHHh--hh-hHHHHhhCCCCcEEEcCHHHH
Q 019402 158 AKYYYIAGFFLTVSPESIQMVAEHAAAKN------KVFMMNLS-----APFICE--FF-REPQEKALPYMDYVFGNETEA 223 (341)
Q Consensus 158 ~~~v~i~~~~~~~~~~~~~~~~~~~~~~~------~~v~~d~~-----~~~~~~--~~-~~~~~~~l~~~dil~~n~~E~ 223 (341)
.+++=++- -.+.+.+..+.+.+++.+ .++++||- +....+ .. ....+.++++++++.||..|+
T Consensus 74 i~aIKiGm---L~s~e~i~~v~~~l~~~~~~~~~~~~vVlDPVl~sssG~~L~~~~~~~~~~~~~Llp~a~viTPN~~Ea 150 (321)
T PTZ00493 74 IDVVKLGV---LYSKKIISLVHNYITNMNKKRGKKLLVVFDPVFVSSSGCLLVENLEYIKFALDLICPISCIITPNFYEC 150 (321)
T ss_pred CCEEEECC---cCCHHHHHHHHHHHHHhcccccCCCeEEECCceEECCCCccCCcHHHHHHHHHHhhccCEEECCCHHHH
Confidence 45666641 225566666666665542 24888983 111111 11 222356999999999999999
Q ss_pred HHHHhh----cCCCCCCHHHHHHHHhcCCCCCC-CCccEEEEeeCCCC------E------EEEeC--------------
Q 019402 224 RTFAKV----HGWETDNVEEIALKISQWPKASG-THKRITVITQGADP------V------VVAED-------------- 272 (341)
Q Consensus 224 ~~l~~~----~~~~~~~~~~~~~~l~~~~~~~~-~~~~~vvvt~G~~G------~------~~~~~-------------- 272 (341)
+.|++. ...+.++++++++++ .. .|++.|+||-|... . +++..
T Consensus 151 ~~L~g~~~~~~~~~~~~~~~aA~~l------~~~~G~~~VliKGGh~~~~~~~~~~~~~~D~l~~~~~~~~~~~~~~~~~ 224 (321)
T PTZ00493 151 KVILEALDCQMDLSKANMTELCKLV------TEKLNINACLFKSCNVGENSAEENEVYAVDHLCIRNVGSYPTGEKQQID 224 (321)
T ss_pred HHHhCCCcccCCCCHHHHHHHHHHH------HHhcCCCEEEECcCCCcccccccccccceeEEecCCccccccccccccc
Confidence 999871 112344567788888 43 58999999977631 1 23321
Q ss_pred -C------eEEEEecccCCCCcccCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhhhhhh
Q 019402 273 -G------KVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPVEDCVRTGCYAANVVIQR 329 (341)
Q Consensus 273 -~------~~~~v~~~~~~~~~vvdttGAGDaf~a~~~~~l~~g~~~~~a~~~A~~~aa~~v~~ 329 (341)
+ +.+.+.... +...++.|.||+|++++++.|++|+++++|++.|...-..++..
T Consensus 225 ~~~~~~~~~~~~~~~~r---i~~~~~hGTGc~fASAIAa~LA~G~~l~~Av~~A~~fv~~aI~~ 285 (321)
T PTZ00493 225 AGGVTYLYDVYKLRSKR---KPGKDIHGTGCTLSTAIACYLAKKHNILQSCIESKKYIYNCIRY 285 (321)
T ss_pred cccccccceEEEEEecc---cCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 1 123333332 24467899999999999999999999999999998888777765
No 76
>PRK09355 hydroxyethylthiazole kinase; Validated
Probab=99.08 E-value=4.4e-09 Score=92.44 Aligned_cols=164 Identities=15% Similarity=0.095 Sum_probs=106.3
Q ss_pred hHhhhhcceEEEEeccccccCHH---HHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCC--CCcEEEcCHHHHHH
Q 019402 151 IWSIVEKAKYYYIAGFFLTVSPE---SIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALP--YMDYVFGNETEART 225 (341)
Q Consensus 151 ~~~~~~~~~~v~i~~~~~~~~~~---~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~--~~dil~~n~~E~~~ 225 (341)
..+....+|.+++..-.+ ..+ .+..+++.+++.++++++||..........+...++++ +.+++++|..|+..
T Consensus 48 ~~~~~~~~~alvi~~G~l--~~~~~~~i~~~~~~a~~~~~pvVlDpv~~~~~~~~~~~~~~ll~~~~~~vItPN~~E~~~ 125 (263)
T PRK09355 48 AEEMAKIAGALVINIGTL--TEERIEAMLAAGKIANEAGKPVVLDPVGVGATSYRTEFALELLAEVKPAVIRGNASEIAA 125 (263)
T ss_pred HHHHHHhcCceEEeCCCC--CHHHHHHHHHHHHHHHhcCCCEEECCcccCcchhhHHHHHHHHHhcCCcEecCCHHHHHH
Confidence 445677889999854222 332 35555666788899999999653211111222333333 68999999999999
Q ss_pred HHhhcCC----C----CCCHHHHHHHHhcCCCCCCCCccEEEEeeCCCCEEEEeCCeEEEEecccCCCCcccCCCCcchh
Q 019402 226 FAKVHGW----E----TDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDA 297 (341)
Q Consensus 226 l~~~~~~----~----~~~~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~v~~~~~~~~~vvdttGAGDa 297 (341)
|++.... + .++..+.++.+. .++...|++| |.. -+++.++..+.++... + ...+.+|+||+
T Consensus 126 L~g~~~~~~~vd~~~~~~~~~~~a~~la------~~~~~~Vvvk-G~~-d~I~~~~~~~~~~~g~-~--~~~~v~GtGc~ 194 (263)
T PRK09355 126 LAGEAAETKGVDSTDGSADAVEIAKAAA------KKYGTVVVVT-GEV-DYITDGERVVSVHNGH-P--LMTKVTGTGCL 194 (263)
T ss_pred HhCCCcccCCcCCCCCHHHHHHHHHHHH------HHhCCEEEEE-CCC-cEEEeCCEEEEEeCCC-c--ccCCcccccHH
Confidence 9875321 1 124556677773 3334567787 443 3555566666665221 1 34556999999
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHhhhh
Q 019402 298 FVGGFLSQLVQEKPVEDCVRTGCYAANVVI 327 (341)
Q Consensus 298 f~a~~~~~l~~g~~~~~a~~~A~~~aa~~v 327 (341)
+.|.+.+.+.+|.++.+|+..|...-+.+-
T Consensus 195 L~~~iaa~lA~g~~~~~A~~~A~~~~~~a~ 224 (263)
T PRK09355 195 LSAVVAAFAAVEKDYLEAAAAACAVYGIAG 224 (263)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999888876655543
No 77
>TIGR00694 thiM hydroxyethylthiazole kinase. This model represents the hydoxyethylthiazole kinase, ThiM, of a number of bacteria, and C-terminal domains of bifunctional thiamine biosynthesis proteins of Saccharomyces cerevisiae and Schizosaccharomyces pombe, in which the N-terminal domain corresponds to the bacterial thiamine-phosphate pyrophosphorylase (EC 2.5.1.3), ThiE.
Probab=98.96 E-value=1.7e-08 Score=87.94 Aligned_cols=165 Identities=16% Similarity=0.075 Sum_probs=105.0
Q ss_pred hHhhhhcceEEEEeccccccC--HHHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCC--CCcEEEcCHHHHHHH
Q 019402 151 IWSIVEKAKYYYIAGFFLTVS--PESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALP--YMDYVFGNETEARTF 226 (341)
Q Consensus 151 ~~~~~~~~~~v~i~~~~~~~~--~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~--~~dil~~n~~E~~~l 226 (341)
..+..+.++.+++..-.+ .+ .+.+..+++.+++.++++++||-.........+...++++ +.+++.+|..|+..|
T Consensus 43 ~~~~~~~~~al~ik~G~l-~~~~~~~i~~~~~~~~~~~~pvVlDPV~~~~s~~r~~~~~~Ll~~~~~~vITpN~~E~~~L 121 (249)
T TIGR00694 43 VAELAKIAGALVINIGTL-DKESIEAMIAAGKSANELGVPVVLDPVGVGATKFRTETALELLSEGRFAAIRGNAGEIASL 121 (249)
T ss_pred HHHHHHHcCceEEeCCCC-CHHHHHHHHHHHHHHHhcCCCEEEcccccccchhHHHHHHHHHhhcCCceeCCCHHHHHHH
Confidence 445677888888875322 12 2455666777778889999999643221111222345565 479999999999999
Q ss_pred Hhhc----CCC----CCCHHHHHHHHhcCCCCCCCCccEEEEeeCCCCEEEEeCCeEEEEecccCCCCcccCCCCcchhh
Q 019402 227 AKVH----GWE----TDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAF 298 (341)
Q Consensus 227 ~~~~----~~~----~~~~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~v~~~~~~~~~vvdttGAGDaf 298 (341)
++.. +.+ .++..++++.+. .++...|++| |..- +++++++.+.+...+. ..-..+|.||++
T Consensus 122 ~g~~~~~~gvd~~~~~~d~~~~a~~la------~~~~~~Vllk-G~~D-~i~~~~~~~~~~~g~~---~~~~~~GtGc~L 190 (249)
T TIGR00694 122 AGETGLMKGVDSGEGAADAIRAAQQAA------QKYGTVVVIT-GEVD-YVSDGTSVYTIHNGTE---LLGKITGSGCLL 190 (249)
T ss_pred hCCCCCCCCcCCccchHHHHHHHHHHH------HHhCCEEEEE-CCCc-EEEeCCEEEEECCCCh---HHhCCccchHHH
Confidence 8743 111 234556677763 2223367776 5543 4556666655432111 112247999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhhhh
Q 019402 299 VGGFLSQLVQEKPVEDCVRTGCYAANVVI 327 (341)
Q Consensus 299 ~a~~~~~l~~g~~~~~a~~~A~~~aa~~v 327 (341)
.+++.+.+++|.++.+|+..|...-..+.
T Consensus 191 ssaIaa~LA~g~~~~~A~~~A~~~~~~a~ 219 (249)
T TIGR00694 191 GSVVAAFCAVEEDPLDAAISACLLYKIAG 219 (249)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999998875444443
No 78
>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism]
Probab=98.55 E-value=7.4e-07 Score=75.47 Aligned_cols=163 Identities=17% Similarity=0.167 Sum_probs=102.4
Q ss_pred hhcceEEEEeccccccC-HHHHHHHHHHHHhcCCe--EEEeCCc-----HHHHhhhhHHHHhhC-CCCcEEEcCHHHHHH
Q 019402 155 VEKAKYYYIAGFFLTVS-PESIQMVAEHAAAKNKV--FMMNLSA-----PFICEFFREPQEKAL-PYMDYVFGNETEART 225 (341)
Q Consensus 155 ~~~~~~v~i~~~~~~~~-~~~~~~~~~~~~~~~~~--v~~d~~~-----~~~~~~~~~~~~~~l-~~~dil~~n~~E~~~ 225 (341)
+..+|.+. +|+..+.+ .+.+..+.++.|+.+.. .++||-- .+.+++--..-++.+ +.+|++.||.-|++.
T Consensus 79 ~~~Y~~vL-TGY~~n~~~l~~i~~iv~~lk~~np~~~wv~DPVmGDnG~lYV~eelipvYr~~i~~ladiiTPNqFE~Ei 157 (308)
T KOG2599|consen 79 LNKYDAVL-TGYLPNVSFLQKIADIVKKLKKKNPNLTWVCDPVMGDNGRLYVPEELIPVYRDLIIPLADIITPNQFEAEI 157 (308)
T ss_pred ccccceee-eeccCChhHHHHHHHHHHHHHhcCCCeEEEeCccccCCccEeccHHHHHHHHHhhcchhhhcCCcchhhhh
Confidence 34566554 56654443 36677777777776644 5677721 111222222233444 459999999999999
Q ss_pred HHhhcCCCCCCHHHHHHHHhcCCCCCCCCccEEEEeeCC----CCE-EEE----eCCeEEEEecccCCCCcccCCCCcch
Q 019402 226 FAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGA----DPV-VVA----EDGKVKLFPVILLPKEKLVDTNGAGD 296 (341)
Q Consensus 226 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vvvt~G~----~G~-~~~----~~~~~~~v~~~~~~~~~vvdttGAGD 296 (341)
|++....+.++..++.+.+ +.++++.||||... .|. ++. .+.+.+.+..|.+ .- --||.||
T Consensus 158 Ltg~~I~t~eda~~a~~~l------hq~~v~~vVITS~~~~~~~g~~l~c~gs~~~~~~f~~~ipki---~~-~FtGTGD 227 (308)
T KOG2599|consen 158 LTGMEIRTEEDAKRAVEKL------HQKGVKTVVITSFDLGEFTGETLRCIGSSCGSERFRYLIPKI---DG-VFTGTGD 227 (308)
T ss_pred hcCCeeccHHHHHHHHHHH------HHhCCCEEEEEeeeeCCCCCcEEEEEEeccCCceEEEEeccc---ce-EEecccH
Confidence 9998888888899999999 67789999999654 242 222 1223444443333 21 2489999
Q ss_pred hhHHHHHHHHhcC---CCHHHHHHHHHHHHhhhhh
Q 019402 297 AFVGGFLSQLVQE---KPVEDCVRTGCYAANVVIQ 328 (341)
Q Consensus 297 af~a~~~~~l~~g---~~~~~a~~~A~~~aa~~v~ 328 (341)
.|+|-+++-+..- .++..+++.+...--..++
T Consensus 228 LfsaLLla~~~~~~~~~~l~~a~e~~ls~~~~viq 262 (308)
T KOG2599|consen 228 LFSALLLAWLHESPDNDDLSKAVEQVLSSVQAVIQ 262 (308)
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHH
Confidence 9998887766554 4566676666554444443
No 79
>PRK03979 ADP-specific phosphofructokinase; Provisional
Probab=98.47 E-value=2.1e-05 Score=73.23 Aligned_cols=75 Identities=16% Similarity=0.063 Sum_probs=53.7
Q ss_pred cceEEEEeccccccC-----------HHHHHHHHHHHH--hcCCeEEEeCCcHHHHhhhhHHHHhhCCCCcEEEcCHHHH
Q 019402 157 KAKYYYIAGFFLTVS-----------PESIQMVAEHAA--AKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEA 223 (341)
Q Consensus 157 ~~~~v~i~~~~~~~~-----------~~~~~~~~~~~~--~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~ 223 (341)
..|.++++|+.+.-. .+.+.+.++..+ ..++++.+++.+..........+..+++++|.+-+|++|+
T Consensus 222 ~~D~avlSG~q~i~~~y~dg~~~~~~l~r~~~~i~~L~~~~~~i~iH~E~As~~~~~ir~~i~~~ilp~vDSlGmNE~EL 301 (463)
T PRK03979 222 MVDGAILSGYQGIKEEYSDGKTAEYYLKRAKEDIKLLKKKNKDIKIHVEFASIQNREIRKKIITYILPHVDSVGMDETEI 301 (463)
T ss_pred CCCEEEEechhhhhccccccccHHHHHHHHHHHHHHHhhCCCCceEEEEeccccCHHHHHHHHHhhccccccccCCHHHH
Confidence 499999999984222 122333444443 3467899999876655556677778999999999999999
Q ss_pred HHHHhhcC
Q 019402 224 RTFAKVHG 231 (341)
Q Consensus 224 ~~l~~~~~ 231 (341)
..+....+
T Consensus 302 a~l~~~lg 309 (463)
T PRK03979 302 ANILNVLG 309 (463)
T ss_pred HHHHHHhc
Confidence 98776553
No 80
>PRK14039 ADP-dependent glucokinase; Provisional
Probab=98.39 E-value=5.7e-05 Score=70.21 Aligned_cols=171 Identities=15% Similarity=0.025 Sum_probs=96.3
Q ss_pred CCceeecCchhHHHHHHHHHHhCCCCceEE-EEeecCCchhHHHHHHHHhcCCceeEee-------------cCCCCcce
Q 019402 54 ENVEYIAGGATQNSIKVAQWMLQIPGATSY-IGCIGKDKFGEEMKKNSTAAGVNVKYYE-------------DESAPTGT 119 (341)
Q Consensus 54 ~~~~~~~GG~~~n~a~~l~~l~~lg~~v~l-i~~vG~D~~g~~i~~~l~~~gi~~~~~~-------------~~~~~t~~ 119 (341)
.....+.||.+..+|..++. +|.++++ .++ ..++..++.|...+|-.-... ....+.-.
T Consensus 84 ~~~~~rmGGnAgimAn~la~---lg~~~Vi~~~~----~lsk~q~~lf~~~~i~~p~~~~~~~l~~~~~~~a~~~~~d~I 156 (453)
T PRK14039 84 DNSEIRMGGNAGIMANVLSE---LGASRVVPNVA----VPSKTQLSLFSKKAVYFPGMPLQASETDGEKVGASSSDQEPI 156 (453)
T ss_pred cCceEEeCChHHHHHHHHHh---cCCceEEEcCC----CCCHHHHHhcCCCCEEeccccccccccCccccccccCCCCCc
Confidence 45678999999999988886 4477544 333 223444555533333222110 01112222
Q ss_pred EEEE-EeCCeece-----eecccccccCCcc-----cCCC-chhHhhhh----cceEEEEeccccccC--------HHHH
Q 019402 120 CAVC-VVGGERSL-----VANLSAANCYKSE-----HLKR-PEIWSIVE----KAKYYYIAGFFLTVS--------PESI 175 (341)
Q Consensus 120 ~~~~-~~~g~~~~-----~~~~~~~~~~~~~-----~~~~-~~~~~~~~----~~~~v~i~~~~~~~~--------~~~~ 175 (341)
-+++ +..|.+.. +..+-+|+.+-.. .+.. +++.+.+. ++|.++++|+.+... .+.+
T Consensus 157 H~IfEy~~G~~~~l~~~~~~aPRaNRfI~s~D~~N~~l~i~e~f~~~l~e~~~~~D~avlSG~q~l~d~y~dg~~~~e~l 236 (453)
T PRK14039 157 HFVFDFREGETFSLYGTRIRAPRENRFIATFDHLNFRLFINPAFEQYALEHAGEMDGALISGFHLLLETYPDGSTYREKL 236 (453)
T ss_pred eEEEEeCCCCEEecCCccEecCCCCeEEEecCCCCccceecHHHHHHHHhhccCCCEEEEechhhhhhhcCCcccHHHHH
Confidence 2222 22455441 1222222211111 1111 23334444 789999999985322 2333
Q ss_pred HHHHHHHHh-----cCCeEEEeCCcHHHHhhhhHHHHhhCCCCcEEEcCHHHHHHHHhhcC
Q 019402 176 QMVAEHAAA-----KNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHG 231 (341)
Q Consensus 176 ~~~~~~~~~-----~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~ 231 (341)
.+..+..+. .++++.+++.+....+.....+..+++++|.+-+|++|+..+....+
T Consensus 237 ~~~~~~i~~l~~~~~~i~iH~E~As~~~~~i~~~v~~~Ilp~VDSlGmNEqELa~l~~~~g 297 (453)
T PRK14039 237 EDSLAQLKWWKSKNEKLRIHAELGHFASKEIANSVFLILAGIVDSIGMNEDELAMLANLHG 297 (453)
T ss_pred HHHHHHHHHHHhcCCCceEEEEecCcccHHHHHHHHHHhhcccccccCCHHHHHHHHHHcc
Confidence 343333332 44789999987766666677788899999999999999999987654
No 81
>KOG2598 consensus Phosphomethylpyrimidine kinase [Coenzyme transport and metabolism; Transcription]
Probab=98.39 E-value=4.3e-06 Score=75.41 Aligned_cols=149 Identities=18% Similarity=0.203 Sum_probs=103.0
Q ss_pred CHHHHHHHHHHHHhcCC-eEEEeCC-----cHHH--HhhhhHHHHhhCCCCcEEEcCHHHHHHHHhhcC------CCCCC
Q 019402 171 SPESIQMVAEHAAAKNK-VFMMNLS-----APFI--CEFFREPQEKALPYMDYVFGNETEARTFAKVHG------WETDN 236 (341)
Q Consensus 171 ~~~~~~~~~~~~~~~~~-~v~~d~~-----~~~~--~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~------~~~~~ 236 (341)
+++.+.-+.+.+...++ ++++||- +... .+.-.-..+++++.+|++.+|..|+-.|.+... .+..+
T Consensus 103 ~~~I~~vi~q~l~~~~~~klVvDPVivatsG~~l~~~divsl~~e~l~P~adiltPNI~Ea~~Ll~~~~~~~~~i~~v~d 182 (523)
T KOG2598|consen 103 SPEIVKVIEQSLQKFNIPKLVVDPVIVATSGSSLAGKDIVSLFIEELLPFADILTPNIPEAFILLKKEKREISKIQSVFD 182 (523)
T ss_pred chHHHHHHHHHHHhhcCcceeecceEEeccCCcccCCccHHHHHHHhhhhHHHhCCChHHHHHHHhhcccCCcccccHHH
Confidence 34444444444444454 4778872 1111 111223467899999999999999999987422 23455
Q ss_pred HHHHHHHHhcCCCCCCCCccEEEEeeCCCCE-----------------EEEeCCeEEEEecccCCCCcccCCCCcchhhH
Q 019402 237 VEEIALKISQWPKASGTHKRITVITQGADPV-----------------VVAEDGKVKLFPVILLPKEKLVDTNGAGDAFV 299 (341)
Q Consensus 237 ~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~-----------------~~~~~~~~~~v~~~~~~~~~vvdttGAGDaf~ 299 (341)
+++.++.+ .+.|++.|+++.|.-.. ++|.+.+++..+.+.+ ....+-|.|-+.+
T Consensus 183 i~~~~~~i------hk~gpk~VlvkGghiP~~~~~~~s~d~~~~~~~DvlydG~~F~~f~~~~~---~t~~tHGtgCtLa 253 (523)
T KOG2598|consen 183 IAKDAAKI------HKLGPKNVLVKGGHIPFNKNMMTSKDDSDKYTVDVLYDGKEFYIFKSPYL---ATKHTHGTGCTLA 253 (523)
T ss_pred HHHHHHHH------HhcCcceEEEeCCCcCccccccccCcccCCceEEEEEecceEEEeccccc---ccccccCccchHH
Confidence 66777777 67889999999775221 3445666777776555 6678999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhhhhh
Q 019402 300 GGFLSQLVQEKPVEDCVRTGCYAANVVIQ 328 (341)
Q Consensus 300 a~~~~~l~~g~~~~~a~~~A~~~aa~~v~ 328 (341)
+++...|++|.++.+|+..|...---+++
T Consensus 254 SAIASnLA~g~sl~qAv~~ai~yvq~Ai~ 282 (523)
T KOG2598|consen 254 SAIASNLARGYSLLQAVQGAIEYVQNAIA 282 (523)
T ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988765444443
No 82
>TIGR02045 P_fruct_ADP ADP-specific phosphofructokinase. Phosphofructokinase is a key enzyme of glycolysis. The phosphate group donor for different subtypes of phosphofructokinase can be ATP, ADP, or pyrophosphate. This family consists of ADP-dependent phosphofructokinases. Members are more similar to ADP-dependent glucokinases (excluded from this family) than to other phosphofructokinases.
Probab=98.32 E-value=9.9e-05 Score=68.49 Aligned_cols=77 Identities=17% Similarity=0.081 Sum_probs=56.2
Q ss_pred hhcceEEEEeccccccC-----------HHHHHHHHHHHHh-cCCeEEEeCCcHHHHhhhhHHHHhhCCCCcEEEcCHHH
Q 019402 155 VEKAKYYYIAGFFLTVS-----------PESIQMVAEHAAA-KNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETE 222 (341)
Q Consensus 155 ~~~~~~v~i~~~~~~~~-----------~~~~~~~~~~~~~-~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~~n~~E 222 (341)
-..+|.++++|+.+... .+...+.++..+. .++++.+++.+....+.....+..+++++|.+-+|++|
T Consensus 207 ~~~~d~~vlSG~q~m~~~y~dg~~~~~~~er~~~~i~~L~~~~~i~iH~E~As~~~~~l~~~i~~~ilp~vDSlGMNE~E 286 (446)
T TIGR02045 207 GEPVDGAILSGYQGIKEEYSDGKTAKYYLERAKEDIELLKKNKDLKIHVEFASIQNREIRKKVVTNIFPHVDSVGMDEAE 286 (446)
T ss_pred hhcccEEEEEchhhhhhhccCCccHhHHHHHHHHHHHHHhhCCCCeEEEEecccccHHHHHHHHHhhccccccccCCHHH
Confidence 35689999999984221 1234444455433 66889999987765555667777899999999999999
Q ss_pred HHHHHhhcC
Q 019402 223 ARTFAKVHG 231 (341)
Q Consensus 223 ~~~l~~~~~ 231 (341)
+..+....+
T Consensus 287 La~ll~~lg 295 (446)
T TIGR02045 287 IANVLSVLG 295 (446)
T ss_pred HHHHHHHhc
Confidence 999886543
No 83
>PF04587 ADP_PFK_GK: ADP-specific Phosphofructokinase/Glucokinase conserved region; InterPro: IPR007666 Although ATP is the most common phosphoryl group donor for kinases, certain hyperthermophilic archaea, such as Thermococcus litoralis and Pyrococcus furiosus, utilise unusual ADP-dependent glucokinases (ADPGKs) and phosphofructokinases (ADPPKKs) in their glycolytic pathways [, , ]. ADPGKs and ADPPFKs exhibit significant similarity, and form an ADP-dependent kinase (ADPK) family, which was tentatively named the PFKC family []. A ~460-residue ADPK domain is also found in a bifunctional ADP-dependent gluco/phosphofructo- kinase (ADP-GK/PFK) from Methanocaldococcus jannaschii (Methanococcus jannaschii) as well as in homologous hypothetical proteins present in several eukaryotes []. The whole structure of the ADPK domain can be divided into large and small alpha/beta subdomains. The larger subdomain, which carries the ADP binding site, consists of a twisted 12-stranded beta sheet flanked on both faces by 13 alpha helices and three 3(10) helices, forming an alpha/beta 3-layer sandwich. The smaller subdomain, which covers the active site, forms an alpha/beta two-layer structure containing 5 beta strands and four alpha helices. The ADP molecule is buried in a shallow pocket in the large subdomain. The binding of substrate sugar induces a structural change, the small domain closing to form a complete substrate sugar binding site [, , ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 1GC5_A 1L2L_A 3DRW_B 1U2X_A 1UA4_A.
Probab=98.06 E-value=5.2e-05 Score=71.42 Aligned_cols=76 Identities=20% Similarity=0.146 Sum_probs=49.5
Q ss_pred hcceEEEEeccccccC----H-------HHHHHHHHHHH-hcCCeEEEeCCcHHHHhhhhHHHHhhCCCCcEEEcCHHHH
Q 019402 156 EKAKYYYIAGFFLTVS----P-------ESIQMVAEHAA-AKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEA 223 (341)
Q Consensus 156 ~~~~~v~i~~~~~~~~----~-------~~~~~~~~~~~-~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~ 223 (341)
.++|.++++|+.+.-. . +.+.+.++..+ ..+.++.+++.+....+..+..+..+++++|.+-+|++|+
T Consensus 208 ~~~d~~vlSGlq~l~~~~~d~~~~~~~l~~~~~~i~~l~~~~~~~iH~E~As~~d~~l~~~i~~~ilp~vDSlGmNEqEL 287 (444)
T PF04587_consen 208 FKPDLAVLSGLQMLDEFYFDGETYEERLKRLKEQIKLLKSNPDIPIHLELASFADEELRKEILEKILPHVDSLGMNEQEL 287 (444)
T ss_dssp TT-SEEEEE-GGG--TB-TTSTCHHHHHHHHHHHHHHHH-HTT-EEEEE----SSHHHHHHHHHHHGGGSSEEEEEHHHH
T ss_pred cCCCEEEEeccccchhhccchhHHHHHHHHHHHHHHhccCCCCCceEEEeccccCHHHHHHHHHHhhccccccccCHHHH
Confidence 4499999999985321 1 23344444555 5788999999876655556677778999999999999999
Q ss_pred HHHHhhcC
Q 019402 224 RTFAKVHG 231 (341)
Q Consensus 224 ~~l~~~~~ 231 (341)
..++...+
T Consensus 288 ~~l~~~lg 295 (444)
T PF04587_consen 288 ANLLSVLG 295 (444)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhC
Confidence 98876544
No 84
>PRK14038 ADP-dependent glucokinase; Provisional
Probab=98.03 E-value=0.00032 Score=65.25 Aligned_cols=78 Identities=18% Similarity=0.061 Sum_probs=52.4
Q ss_pred hhhhcceEEEEeccccccC---HHH---HHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCCCCcEEEcCHHHHHHH
Q 019402 153 SIVEKAKYYYIAGFFLTVS---PES---IQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTF 226 (341)
Q Consensus 153 ~~~~~~~~v~i~~~~~~~~---~~~---~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l 226 (341)
+...+.|+++++|+.+... .+. +.+.++..++.++++.+++........... +.++++++|-+-+|++|+..+
T Consensus 220 ei~~~~Dl~vlSG~q~l~~~~~~~~l~~~~~~l~~l~~~~i~iH~EfAs~~d~~~r~~-i~~ilp~vDSlGmNE~ELa~l 298 (453)
T PRK14038 220 EIAKKAELAIISGLQALTEENYREPFETVREHLKVLNERGIPAHLEFAFTPDETVREE-ILGLLGKFYSVGLNEVELASI 298 (453)
T ss_pred hhccCCCEEEEEchhhhccccHHHHHHHHHHHHHhcCcCCceEEEEeeccchHHHHHH-HHhhCccccccccCHHHHHHH
Confidence 3446799999999984221 123 333333434467889999975543333334 446999999999999999988
Q ss_pred HhhcC
Q 019402 227 AKVHG 231 (341)
Q Consensus 227 ~~~~~ 231 (341)
....+
T Consensus 299 l~~lg 303 (453)
T PRK14038 299 MEVMG 303 (453)
T ss_pred HHHhc
Confidence 87544
No 85
>PF01256 Carb_kinase: Carbohydrate kinase; InterPro: IPR000631 This family is related to Hydroxyethylthiazole kinase IPR000417 from INTERPRO and PfkB carbohydrate kinase IPR011611 from INTERPRO implying that it also a carbohydrate kinase. Several uncharacterised proteins have been shown to share regions of similarities, including yeast chromosome XI hypothetical protein YKL151c; Caenorhabditis elegans hypothetical protein R107.2; Escherichia coli hypothetical protein yjeF; Bacillus subtilis hypothetical protein yxkO; Helicobacter pylori hypothetical protein HP1363; Mycobacterium tuberculosis hypothetical protein MtCY77.05c; Mycobacterium leprae hypothetical protein B229_C2_201; Synechocystis sp. (strain PCC 6803) hypothetical protein sll1433; and Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1586. These are proteins of about 30 to 40 kDa whose central region is well conserved.; PDB: 3RSG_A 3RT9_A 3RRF_A 3RTB_A 3RRE_A 3RS9_A 3RSS_A 3RRB_A 3RTA_A 3RTD_A ....
Probab=97.96 E-value=0.00018 Score=62.32 Aligned_cols=157 Identities=17% Similarity=0.091 Sum_probs=101.2
Q ss_pred hhhhcceEEEEeccccccCHHHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCCCCcEEEcCHHHHHHHHhhcCC
Q 019402 153 SIVEKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGW 232 (341)
Q Consensus 153 ~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~ 232 (341)
+.++++|.+.+.+ .+.... ....+++...+...++++|-.....-.... ...+.--|+.|+.-|+.+|++....
T Consensus 63 ~~~~~~~av~iGP-Glg~~~-~~~~~~~~~~~~~~p~VlDADaL~~l~~~~----~~~~~~~IlTPH~gE~~rL~~~~~~ 136 (242)
T PF01256_consen 63 ELLEKADAVVIGP-GLGRDE-ETEELLEELLESDKPLVLDADALNLLAENP----KKRNAPVILTPHPGEFARLLGKSVE 136 (242)
T ss_dssp HHHCH-SEEEE-T-T-SSSH-HHHHHHHHHHHHCSTEEEECHHHHCHHHCC----CCSSSCEEEE-BHHHHHHHHTTTCH
T ss_pred hhhccCCEEEeec-CCCCch-hhHHHHHHHHhhcceEEEehHHHHHHHhcc----ccCCCCEEECCCHHHHHHHhCCccc
Confidence 5678899999976 223333 334466666667778999986543211100 2344566777999999999986542
Q ss_pred CCCCHHHHHHHHhcCCCCCCCCccEEEEeeCCCCEEEEeCCeEEEEecccCCCCcccCCCCcchhhHHHHHHHHhcCCCH
Q 019402 233 ETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEKPV 312 (341)
Q Consensus 233 ~~~~~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~v~~~~~~~~~vvdttGAGDaf~a~~~~~l~~g~~~ 312 (341)
..++..++++++.+. .+.+|+=.|..-.....+++.+..+.-. .-.-+-|.||.+++-+..-+.++.++
T Consensus 137 ~~~~~~~~a~~~a~~-------~~~~vvLKG~~t~I~~p~~~~~~n~~gn----~~la~gGsGDvLaGii~~llaq~~~~ 205 (242)
T PF01256_consen 137 IQEDRIEAAREFAKE-------YGAVVVLKGAVTIIASPGGRVYVNPTGN----PGLATGGSGDVLAGIIAGLLAQGYDP 205 (242)
T ss_dssp HCCSHHHHHHHHHHH-------HTSEEEEESTSSEEEEETSEEEEE--------GGGSSTTHHHHHHHHHHHHHHHTSSH
T ss_pred chhhHHHHHHHHHhh-------cCcEEEEeCCCcEEEecCcceeEeCCCC----CCCCCCCcccHHHHHHHHHHHccCCH
Confidence 345667777776431 2335666688666666688777766432 45678999999998888888999999
Q ss_pred HHHHHHHHHHHhhh
Q 019402 313 EDCVRTGCYAANVV 326 (341)
Q Consensus 313 ~~a~~~A~~~aa~~ 326 (341)
.+|...|+..=+.+
T Consensus 206 ~~Aa~~av~lHg~A 219 (242)
T PF01256_consen 206 FEAACLAVYLHGRA 219 (242)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99988887654433
No 86
>PF02110 HK: Hydroxyethylthiazole kinase family; InterPro: IPR000417 Thiamine pyrophosphate (TPP), a required cofactor for many enzymes in the cell, is synthesised de novo in Salmonella typhimurium []. Five kinase activities have been implicated in TPP synthesis, which involves joining a 4-methyl-5-(beta-hydroxyethyl)thiazole (THZ) moiety and a 4-amino-5- hydroxymethyl-2-methylpyrimidine (HMP) moiety [, ]. THZ kinase (2.7.1.50 from EC) activity is involved in the salvage synthesis of TH-P from the thiazole: 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate + 4-4-methyl-5-(2-phosphonooxyethyl)-thiazole = pyrophosphate + thiamin monophosphate Hydroxyethylthiazole kinase expression is regulated at the mRNA level by intracellular thiamin pyrophosphate [].; GO: 0004417 hydroxyethylthiazole kinase activity, 0009228 thiamine biosynthetic process; PDB: 1EKK_A 1ESQ_C 1C3Q_B 1ESJ_A 1EKQ_B 3HPD_A 3DZV_A 3NL5_A 3NL2_A 3NM1_A ....
Probab=97.95 E-value=0.00029 Score=60.57 Aligned_cols=161 Identities=17% Similarity=0.093 Sum_probs=98.5
Q ss_pred hhHhhhhcceEEEEecccccc-CHHHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCC--CCcEEEcCHHHHHHH
Q 019402 150 EIWSIVEKAKYYYIAGFFLTV-SPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALP--YMDYVFGNETEARTF 226 (341)
Q Consensus 150 ~~~~~~~~~~~v~i~~~~~~~-~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~--~~dil~~n~~E~~~l 226 (341)
|..+..+.++.+++.--++.- ..+.+...++.+.+.++|+++||-+-.......+...++++ +.++|+.|..|...|
T Consensus 42 E~~e~~~~a~al~iNiGTl~~~~~~~m~~A~~~A~~~~~PvVLDPVgvGas~~R~~~~~~LL~~~~~~vIrGN~sEI~aL 121 (246)
T PF02110_consen 42 EVEEFASIADALVINIGTLTDERIEAMKKAAKAANELGIPVVLDPVGVGASKFRTEFALELLNNYKPTVIRGNASEIAAL 121 (246)
T ss_dssp THHHHHHCTSEEEEESTTSSHHHHHHHHHHHHHHHHTT--EEEE-TTBTTBHHHHHHHHHHHCHS--SEEEEEHHHHHHH
T ss_pred HHHHHHHHcCEEEEECCCCCHhHHHHHHHHHHHHHHcCCCEEEeCcccCCcHHHHHHHHHHHHhCCCcEEEeCHHHHHHH
Confidence 344667788888886433211 12678888899999999999999654433334556777884 689999999999999
Q ss_pred HhhcCC----CC----CCHHHHHHHHhcCCCCCCCCccEEEEeeCCCCEEEEeCCeEEEEecccCCCCcccCCCCcchhh
Q 019402 227 AKVHGW----ET----DNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAF 298 (341)
Q Consensus 227 ~~~~~~----~~----~~~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~v~~~~~~~~~vvdttGAGDaf 298 (341)
.+.... |. .+..+.++.+.+. . -..|++| |+.... .++.+.+.++--.. -.-.-||.|+..
T Consensus 122 ag~~~~~kGVDs~~~~~~~~~~a~~lA~k-----~-~~vVvvT-G~~D~I-sdg~~~~~i~nG~~---~l~~itGtGC~l 190 (246)
T PF02110_consen 122 AGEDSKAKGVDSGDSDEDAIEAAKQLAQK-----Y-NCVVVVT-GEVDYI-SDGNRVYRIPNGSP---LLSKITGTGCML 190 (246)
T ss_dssp HTCCCCSCSSSSSCGSHHHHHHHHHHHHH-----T-TSEEEEE-SSSEEE-EESSCEEEECSSSG---GGGGSTTHHHHH
T ss_pred hCcCCCCCCcCcCCcchHHHHHHHHHHHh-----c-CCEEEEe-cCCcEE-ECCCeEEEeCCCCh---HhcceeccchHH
Confidence 985422 21 1134566666431 1 2344444 775554 45666666653211 344569999998
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHH
Q 019402 299 VGGFLSQLVQEKPVEDCVRTGCY 321 (341)
Q Consensus 299 ~a~~~~~l~~g~~~~~a~~~A~~ 321 (341)
.+-+.+.+....+.-++...|..
T Consensus 191 galiaaf~av~~d~~~aa~~a~~ 213 (246)
T PF02110_consen 191 GALIAAFLAVAEDPLEAAVAAVA 213 (246)
T ss_dssp HHHHHHHHCCCSSHHHHHHHHHH
T ss_pred HHHHHHHHhccccchHHHHHHHH
Confidence 87777777665666665544443
No 87
>PRK10565 putative carbohydrate kinase; Provisional
Probab=97.93 E-value=0.00033 Score=67.34 Aligned_cols=151 Identities=17% Similarity=0.111 Sum_probs=92.5
Q ss_pred hhhhcceEEEEeccccccCHHHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCCCCcEEEcCHHHHHHHHhhcCC
Q 019402 153 SIVEKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGW 232 (341)
Q Consensus 153 ~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~ 232 (341)
+.++.+|.+++..-. ..+ +....+++.+++.+.++++|.....+-..... .....+|.||..|+..|++....
T Consensus 316 ~~~~~~~a~viGpGl-g~~-~~~~~~~~~~~~~~~P~VLDAdaL~ll~~~~~-----~~~~~VLTPh~gE~~rL~~~~~~ 388 (508)
T PRK10565 316 ESLEWADVVVIGPGL-GQQ-EWGKKALQKVENFRKPMLWDADALNLLAINPD-----KRHNRVITPHPGEAARLLGCSVA 388 (508)
T ss_pred HHhhcCCEEEEeCCC-CCC-HHHHHHHHHHHhcCCCEEEEchHHHHHhhCcc-----ccCCeEECCCHHHHHHHhCCChh
Confidence 345678888887522 222 33355557777778899999976442111100 11246899999999999873221
Q ss_pred CC-CCHHHHHHHHhcCCCCCCCCccEEEEeeCCCCEEEEeC-CeEEEEecccCCCCcccCCCCcchhhHHHHHHHHhcCC
Q 019402 233 ET-DNVEEIALKISQWPKASGTHKRITVITQGADPVVVAED-GKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQEK 310 (341)
Q Consensus 233 ~~-~~~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~-~~~~~v~~~~~~~~~vvdttGAGDaf~a~~~~~l~~g~ 310 (341)
.. .+..+.++.+.+ ....+||+ .|.. .+++.. +..+..+.- . ...-++|.||.++|.+.+-++++.
T Consensus 389 ~v~~~~~~~a~~~a~------~~~~~vvl-KG~~-~iI~~~~~~~~~~~~G-~---~~ma~~GsGDvLaGiIaalla~g~ 456 (508)
T PRK10565 389 EIESDRLLSARRLVK------RYGGVVVL-KGAG-TVIAAEPDALAIIDVG-N---AGMASGGMGDVLSGIIGALLGQKL 456 (508)
T ss_pred hhhhhHHHHHHHHHH------HhCCEEEE-eCCC-cEEEcCCceEEEECCC-C---CCCCCCChHHHHHHHHHHHHHcCC
Confidence 11 133445555532 22234554 4663 455543 444444322 1 445679999999998888889999
Q ss_pred CHHHHHHHHHHH
Q 019402 311 PVEDCVRTGCYA 322 (341)
Q Consensus 311 ~~~~a~~~A~~~ 322 (341)
++.+|+..|+..
T Consensus 457 ~~~~Aa~~a~~l 468 (508)
T PRK10565 457 SPYDAACAGCVA 468 (508)
T ss_pred CHHHHHHHHHHH
Confidence 998888887743
No 88
>COG2145 ThiM Hydroxyethylthiazole kinase, sugar kinase family [Coenzyme metabolism]
Probab=97.75 E-value=0.0014 Score=56.01 Aligned_cols=158 Identities=17% Similarity=0.120 Sum_probs=97.9
Q ss_pred hHhhhhcceEEEEecccccc-CHHHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCCC--CcEEEcCHHHHHHHH
Q 019402 151 IWSIVEKAKYYYIAGFFLTV-SPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPY--MDYVFGNETEARTFA 227 (341)
Q Consensus 151 ~~~~~~~~~~v~i~~~~~~~-~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~--~dil~~n~~E~~~l~ 227 (341)
..+..+-++.+.|.--++.- ..+.+...++.+.+.+.|+++||-+-.-.+..++...++|++ .++|..|.-|...|.
T Consensus 49 ~~e~~kia~AL~INIGTL~~~~~~~m~~A~~~An~~~~PvvLDPVgvgAt~~R~~~~~~LL~~~~~~~IrGN~sEI~~La 128 (265)
T COG2145 49 VEEFAKIADALLINIGTLSAERIQAMRAAIKAANESGKPVVLDPVGVGATKFRTKFALELLAEVKPAAIRGNASEIAALA 128 (265)
T ss_pred HHHHHHhccceEEeeccCChHHHHHHHHHHHHHHhcCCCEEecCccCCchHHHHHHHHHHHHhcCCcEEeccHHHHHHHh
Confidence 33556667777776444322 346788888999999999999996544334445567777774 699999999999998
Q ss_pred hhcC----CC----CCCHHHHHHHHhcCCCCCCCCccEEEEeeCCCCEEEEeCCeEEEEecccCCCCcccCCCCcchhhH
Q 019402 228 KVHG----WE----TDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFV 299 (341)
Q Consensus 228 ~~~~----~~----~~~~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~v~~~~~~~~~vvdttGAGDaf~ 299 (341)
+..+ .| ..++.++++.+.+ .. +.+++-.|+..+. .++++.+.+.--. | -.-..||+|+...
T Consensus 129 g~~~~~kGVDa~~~~~~~~~~a~~~A~-----~~--~~vvvvTG~vD~I-sdg~~~~~i~nG~-p--ll~~ItGtGCllg 197 (265)
T COG2145 129 GEAGGGKGVDAGDGAADAIEAAKKAAQ-----KY--GTVVVVTGEVDYI-SDGTRVVVIHNGS-P--LLGKITGTGCLLG 197 (265)
T ss_pred cccccccccccccchhhHHHHHHHHHH-----Hh--CcEEEEECCeeEE-EcCCeEEEEECCC-c--HHhhhhccccHHH
Confidence 6442 22 3344555555532 12 2344444664433 3455555443221 1 2345689999888
Q ss_pred HHHHHHHhcCCC-HHHHHHHH
Q 019402 300 GGFLSQLVQEKP-VEDCVRTG 319 (341)
Q Consensus 300 a~~~~~l~~g~~-~~~a~~~A 319 (341)
|...+.+....+ .-+|..-|
T Consensus 198 av~aaF~av~~d~~~~A~~~A 218 (265)
T COG2145 198 AVVAAFLAVEKDPLLDAAAEA 218 (265)
T ss_pred HHHHHHHhcCCCHHHHHHHHH
Confidence 777777776666 34544443
No 89
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=97.58 E-value=0.0037 Score=53.19 Aligned_cols=165 Identities=16% Similarity=0.248 Sum_probs=106.1
Q ss_pred hhhhcceEEEEeccccccCH---HHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCC-C-CcEEEcCHHHHHHHH
Q 019402 153 SIVEKAKYYYIAGFFLTVSP---ESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALP-Y-MDYVFGNETEARTFA 227 (341)
Q Consensus 153 ~~~~~~~~v~i~~~~~~~~~---~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~-~-~dil~~n~~E~~~l~ 227 (341)
..+.+-+++++.+ .+..++ ..+..+++.++++++++++|-.+........+ .++. + .-|+.||.-|+..|+
T Consensus 97 k~L~RlhavVIGP-GLGRdp~~~k~i~~iley~~~~dvP~VIDaDGL~Lv~q~~e---~l~~~~~~viLTPNvvEFkRLc 172 (306)
T KOG3974|consen 97 KLLQRLHAVVIGP-GLGRDPAILKEIAKILEYLRGKDVPLVIDADGLWLVEQLPE---RLIGGYPKVILTPNVVEFKRLC 172 (306)
T ss_pred HHHhheeEEEECC-CCCCCHHHHHHHHHHHHHHhcCCCcEEEcCCceEehhhchh---hhhccCceeeeCCcHHHHHHHH
Confidence 4578889999976 344454 56888999999999999999976554332222 2333 2 356679999999999
Q ss_pred hhcCCCCCCHHHHHHHHhcCCCCCCCCccEEEEeeCCCCEEEEeCCeEEEEecccCCCCcccCCCCcchhhHHHHHHHH-
Q 019402 228 KVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQL- 306 (341)
Q Consensus 228 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~v~~~~~~~~~vvdttGAGDaf~a~~~~~l- 306 (341)
+....+.+... .+..|.. .-....|+-.|+...++..+.+.+..+.. - ...-.-|=||..++.+..-+
T Consensus 173 d~~l~~~d~~~-~~~~L~~------~l~nv~vvqKG~~D~ils~~~ev~~~s~e-G---s~kRcGGQGDiLaGsla~fl~ 241 (306)
T KOG3974|consen 173 DAELDKVDSHS-QMQHLAA------ELMNVTVVQKGESDKILSPDSEVRVCSTE-G---SLKRCGGQGDILAGSLATFLS 241 (306)
T ss_pred HHhhccccchH-HHHHHHH------HhcCeEEEEecCCceeeCCCCeeEEccCC-C---CccccCCCcchhhhHHHHHHH
Confidence 87553333333 3333311 11345777788888766666666555432 1 33445678999988766543
Q ss_pred -h--cCCCHHHHHHHHHHHHhhhhhhccc
Q 019402 307 -V--QEKPVEDCVRTGCYAANVVIQRSGC 332 (341)
Q Consensus 307 -~--~g~~~~~a~~~A~~~aa~~v~~~g~ 332 (341)
+ ...+.+++.-.|..+++..+++.+.
T Consensus 242 w~k~~~~e~~~~~~~a~~a~s~~vr~a~r 270 (306)
T KOG3974|consen 242 WAKLLSGEQDSAAFLAAVAGSIMVRRAGR 270 (306)
T ss_pred HHHhccCCccchhhhhhhhhHHHHHHHHH
Confidence 3 3344557788888888777776554
No 90
>cd01938 ADPGK_ADPPFK ADP-dependent glucokinase (ADPGK) and phosphofructokinase (ADPPFK). ADPGK and ADPPFK are proteins that rely on ADP rather than ATP to donate a phosphoryl group. They are found in certain hyperthermophilic archaea and in higher eukaryotes. A functional ADPGK has been characterized in mouse and is assumed to be desirable during ischemia/hypoxia. ADPGK and ADPPFK contain a large and a small domain with the binding site located in a groove between the domains. Partial domain closing is seen when ADP is bound, and further domain closing is observed when glucose is also bound. The oligomerization state apparently varies depending on the species, with some existing as monomers, some as dimers, and some as tetramers.
Probab=96.72 E-value=0.031 Score=52.59 Aligned_cols=170 Identities=15% Similarity=0.058 Sum_probs=91.5
Q ss_pred CceeecCchhHHHHHHHHHHhCCCC-ceEEEEeecCCchhHHHHHHHHhcCCceeEeecCCCCcceEEE-EEeCCeece-
Q 019402 55 NVEYIAGGATQNSIKVAQWMLQIPG-ATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAV-CVVGGERSL- 131 (341)
Q Consensus 55 ~~~~~~GG~~~n~a~~l~~l~~lg~-~v~li~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~-~~~~g~~~~- 131 (341)
....+.||.+.-+|..++. +|. +|.+.+++... .....+...+|-.-.......+.-.-++ .+..|++..
T Consensus 100 ~~~~~mGGnAgimAn~la~---~g~~~Vil~~p~~~k----~~~~L~~d~~i~~p~~e~~~~~d~IHlIlEy~~G~~~~~ 172 (445)
T cd01938 100 WDELRMGGNAGLMANRLAG---EGDLKVLLGVPQSSK----LQAELFLDGPIVVPTFENLIEEDEIHLILEYPRGESWGD 172 (445)
T ss_pred CceEEeCChHHHHHHHHHh---cCCceEEEecCCCcH----HHHHhCCCCCeeecccccCCCCCccEEEEEcCCCCEecc
Confidence 4568999998888888876 446 77777775443 2222222211111101100111222222 222454321
Q ss_pred eecccccccCCccc----CC-CchhH-hhhhc-ceEEEEeccccccC----HHHHHHHHHHHH----h--cCCeEEEeCC
Q 019402 132 VANLSAANCYKSEH----LK-RPEIW-SIVEK-AKYYYIAGFFLTVS----PESIQMVAEHAA----A--KNKVFMMNLS 194 (341)
Q Consensus 132 ~~~~~~~~~~~~~~----~~-~~~~~-~~~~~-~~~v~i~~~~~~~~----~~~~~~~~~~~~----~--~~~~v~~d~~ 194 (341)
+..+-+|+.+-..+ +. .+++. +..+. .|.++++|+.+.-. .....+.++.++ . ..+++.+++.
T Consensus 173 ~~aPraNRfI~~~d~~n~l~~~ee~~~~i~~~~pDl~vlSGlqmm~~~~~~~~~~~~~l~~~~~~l~~l~~~i~iH~E~A 252 (445)
T cd01938 173 FVAPRANRFIFHDDDNNPMLMREEFFSSILEFQPDLAVLSGLQMMEGQSFDEGTRKELLERVKSILEILPPLIPIHLELA 252 (445)
T ss_pred eEcCCCCeEEEecCCcchhhhhHHHHHHHhhcCCCEEEEechhhhcccCCChhhHHHHHHHHHHHHHhccccCcEEEEec
Confidence 11122222111111 11 11222 23333 89999999985221 233333333332 2 3378999998
Q ss_pred cHHHHhhhhHHHHhhCCCCcEEEcCHHHHHHHHhhcC
Q 019402 195 APFICEFFREPQEKALPYMDYVFGNETEARTFAKVHG 231 (341)
Q Consensus 195 ~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~ 231 (341)
+....+...+.+..+++++|-+=+|++|+..+....+
T Consensus 253 s~~d~~l~~~i~~~ilp~VDSlGmNEqEL~~l~~~lg 289 (445)
T cd01938 253 STVDEELREEILHEVVPYVDSLGLNEQELANLLQVLG 289 (445)
T ss_pred ccccHHHHHHHHHHhcccccccccCHHHHHHHHHHhC
Confidence 7665555677778899999999999999999887544
No 91
>COG0063 Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=95.68 E-value=0.33 Score=43.00 Aligned_cols=138 Identities=20% Similarity=0.112 Sum_probs=75.7
Q ss_pred hhcceEEEEeccccccCHHHHHHHHHHHHhcC-CeEEEeCCcHHHHhhhhHHHHhhCCC-CcEEEcCHHHHHHHHhhcC-
Q 019402 155 VEKAKYYYIAGFFLTVSPESIQMVAEHAAAKN-KVFMMNLSAPFICEFFREPQEKALPY-MDYVFGNETEARTFAKVHG- 231 (341)
Q Consensus 155 ~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~-~~v~~d~~~~~~~~~~~~~~~~~l~~-~dil~~n~~E~~~l~~~~~- 231 (341)
.+..|.+.+.+ .+....+ ..++++..-+.. .++++|......- ......... .-|+.|..-|++.|++...
T Consensus 99 ~~~~~avviGp-GlG~~~~-~~~~~~~~l~~~~~p~ViDADaL~~l----a~~~~~~~~~~~VlTPH~gEf~rL~g~~~~ 172 (284)
T COG0063 99 VERADAVVIGP-GLGRDAE-GQEALKELLSSDLKPLVLDADALNLL----AELPDLLDERKVVLTPHPGEFARLLGTEVD 172 (284)
T ss_pred hccCCEEEECC-CCCCCHH-HHHHHHHHHhccCCCEEEeCcHHHHH----HhCcccccCCcEEECCCHHHHHHhcCCccc
Confidence 45788999874 2233332 233333333333 7889998653310 011122222 2666699999999987322
Q ss_pred CCCCCHHHHHHHHhcCCCCCCCCccEEEEeeCCCCEEEEeCCeEEEEecccCCCCcccCCCCcchhhHHHHHHHHhcC
Q 019402 232 WETDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQE 309 (341)
Q Consensus 232 ~~~~~~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~v~~~~~~~~~vvdttGAGDaf~a~~~~~l~~g 309 (341)
....+..+.++.+.+. ...+||=.|..-.....+++.+..+.-. .-.-+=|.||+.++-+.+-|+++
T Consensus 173 ~~~~~r~~~a~~~a~~-------~~~vvVLKG~~tvI~~~~g~~~~n~~G~----~~ma~GGtGDvLaGii~alLAq~ 239 (284)
T COG0063 173 EIEVDRLEAARELAAK-------YGAVVVLKGAVTVIADPDGEVFVNPTGN----PGMATGGTGDVLAGIIGALLAQG 239 (284)
T ss_pred ccccchHHHHHHHHHH-------cCCEEEEeCCCCEEEcCCCcEEEcCCCC----HHhccCcchHHHHHHHHHHHhCC
Confidence 2223445566666321 2335555677555544344555443221 23456789999887776667777
No 92
>COG4809 Archaeal ADP-dependent phosphofructokinase/glucokinase [Carbohydrate transport and metabolism]
Probab=93.75 E-value=2.6 Score=38.60 Aligned_cols=79 Identities=16% Similarity=0.048 Sum_probs=57.7
Q ss_pred hhhhcceEEEEecccccc------C-----HHHHHHHHHHHHh-cCCeEEEeCCcHHHHhhhhHHHHhhCCCCcEEEcCH
Q 019402 153 SIVEKAKYYYIAGFFLTV------S-----PESIQMVAEHAAA-KNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNE 220 (341)
Q Consensus 153 ~~~~~~~~v~i~~~~~~~------~-----~~~~~~~~~~~~~-~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~~n~ 220 (341)
+...+.|...++|+..-. + -+...+-++..++ .++++.+++.........+..+.++++.++-+=+|+
T Consensus 221 ~i~~~vDgaiiSGyq~l~eey~dg~t~~~yle~s~e~i~~lk~~~~irvHlEfas~~d~~irk~i~~~il~~v~SvGldE 300 (466)
T COG4809 221 EIAKEVDGAIISGYQGLKEEYSDGSTYKYYLERSREDIKALKDRENIRVHLEFASIQDRKIRKEILTNILSIVYSVGLDE 300 (466)
T ss_pred HHhhhcceeeeechhhhhhhcCCCCcHHHHHHHHHHHHHHHhccccceEEEEecccccHHHHHHHHHHHHhhhhhcCCCH
Confidence 455679999999987411 1 1234444555566 778899999876655666777888999999999999
Q ss_pred HHHHHHHhhcC
Q 019402 221 TEARTFAKVHG 231 (341)
Q Consensus 221 ~E~~~l~~~~~ 231 (341)
.|...+....+
T Consensus 301 ~ElA~vl~vlG 311 (466)
T COG4809 301 VELANVLNVLG 311 (466)
T ss_pred HHHHHHHHhhC
Confidence 99998876554
No 93
>KOG4184 consensus Predicted sugar kinase [Carbohydrate transport and metabolism; General function prediction only]
Probab=92.93 E-value=1 Score=40.42 Aligned_cols=166 Identities=14% Similarity=0.150 Sum_probs=90.0
Q ss_pred CCceeecCchhHHHHHHHHHHhCCCCceEEEEeecCCchhHHHHHHHHhcCCceeEeecCCCCcceEEEEEeCCeece-e
Q 019402 54 ENVEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVVGGERSL-V 132 (341)
Q Consensus 54 ~~~~~~~GG~~~n~a~~l~~l~~lg~~v~li~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~g~~~~-~ 132 (341)
.....+.||++.-+|.-.. .. ..++++|+.|.-.. +- |--.-+.+..-+++.++-. -++.+..|+..- .
T Consensus 136 ~R~~~~mGGNA~LMA~R~~--~~--~~~~LlG~~~~R~~----~~-L~P~~~R~~~~~I~~DdiH-lILEYK~Gd~~G~~ 205 (478)
T KOG4184|consen 136 ERINWYMGGNAPLMAVRFF--ME--GAQVLLGAHMSRKL----RP-LLPKEIRLAGDEIPNDDIH-LILEYKAGDKWGPY 205 (478)
T ss_pred hhhhhhccCCchHHHHHHH--hc--cceeeecccccchh----cc-ccchhhhcccCcCcCCceE-EEEEeccCCccccc
Confidence 4667899998777666544 12 58999999886422 11 1111133333333322221 122233454422 1
Q ss_pred ecccccccCCcccCC------CchhHhhhh--cceEEEEecccc-cc-CHHH----HHHHHHHHH--hcCCeEEEeCCcH
Q 019402 133 ANLSAANCYKSEHLK------RPEIWSIVE--KAKYYYIAGFFL-TV-SPES----IQMVAEHAA--AKNKVFMMNLSAP 196 (341)
Q Consensus 133 ~~~~~~~~~~~~~~~------~~~~~~~~~--~~~~v~i~~~~~-~~-~~~~----~~~~~~~~~--~~~~~v~~d~~~~ 196 (341)
.-+.+++.+...+-. -+.+.+.++ +.|+++++|..+ ++ +.+. +..+-+.+- ..|+++.+++.+.
T Consensus 206 VAP~anR~I~~~D~~n~~m~~~E~f~~Al~~fqPdLvVvsGlhmme~qske~r~~rl~~V~r~L~~iP~gip~HlElaS~ 285 (478)
T KOG4184|consen 206 VAPRANRYILHNDRNNPHMRAVEQFTDALKMFQPDLVVVSGLHMMEMQSKEEREARLQQVVRSLSDIPTGIPVHLELASM 285 (478)
T ss_pred ccccccceeeecCCCChHHHHHHHHHHHHHHhCCCEEEEechhHHhhhhHHHHHHHHHHHHHHHhcCCCCCchhhhHhHH
Confidence 222333322222111 112223332 569999999874 33 2222 222222222 2567888888766
Q ss_pred HHHhhhhHHHHhhCCCCcEEEcCHHHHHHHHhh
Q 019402 197 FICEFFREPQEKALPYMDYVFGNETEARTFAKV 229 (341)
Q Consensus 197 ~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~ 229 (341)
.......+.+...++++|-+=+|++|+..|...
T Consensus 286 ~~~~l~~~i~h~VlPyVdSLGlNEQEL~fL~q~ 318 (478)
T KOG4184|consen 286 TNRELMSSIVHQVLPYVDSLGLNEQELLFLTQS 318 (478)
T ss_pred HHHHHHHHHHHHhhhhccccCCCHHHHHHHHHH
Confidence 544445566778999999999999999988764
No 94
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=91.22 E-value=0.88 Score=38.64 Aligned_cols=68 Identities=12% Similarity=-0.038 Sum_probs=50.6
Q ss_pred cceEEEEeccccccCHHHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCCCCcEEEc-----CHHHHHHHHh
Q 019402 157 KAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFG-----NETEARTFAK 228 (341)
Q Consensus 157 ~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~~-----n~~E~~~l~~ 228 (341)
....|.++|-.+.+.++.+.++++.+++.|+.+.+|..+.. ..+.+.++++++|.+.+ +.+.-+.+++
T Consensus 38 sggGVt~SGGEPllq~~fl~~l~~~~k~~gi~~~leTnG~~----~~~~~~~l~~~~D~~l~DiK~~d~~~~~~~tG 110 (213)
T PRK10076 38 SGGGVTLSGGEVLMQAEFATRFLQRLRLWGVSCAIETAGDA----PASKLLPLAKLCDEVLFDLKIMDATQARDVVK 110 (213)
T ss_pred CCCEEEEeCchHHcCHHHHHHHHHHHHHcCCCEEEECCCCC----CHHHHHHHHHhcCEEEEeeccCCHHHHHHHHC
Confidence 34689999877777889999999999999999999998755 23446667777777655 4444455554
No 95
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=76.40 E-value=14 Score=32.33 Aligned_cols=81 Identities=16% Similarity=0.085 Sum_probs=57.1
Q ss_pred cceEEEEeccccccCHHHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCCCCcEEEcC-----HHHHHHHHhhcC
Q 019402 157 KAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGN-----ETEARTFAKVHG 231 (341)
Q Consensus 157 ~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~~n-----~~E~~~l~~~~~ 231 (341)
..+.|.++|-.+.+..+.+.++++.+|+.|..+.+|..+.. ..+...++++..|.+.++ .+..+.+++..
T Consensus 83 ~~~gvt~SGGEP~~q~e~~~~~~~~ake~Gl~~~l~TnG~~----~~~~~~~l~~~~D~v~~DlK~~~~~~y~~~tg~~- 157 (260)
T COG1180 83 SGGGVTFSGGEPTLQAEFALDLLRAAKERGLHVALDTNGFL----PPEALEELLPLLDAVLLDLKAFDDELYRKLTGAD- 157 (260)
T ss_pred CCCEEEEECCcchhhHHHHHHHHHHHHHCCCcEEEEcCCCC----CHHHHHHHHhhcCeEEEeeccCChHHHHHHhCCC-
Confidence 67889999877777889999999999999999999998765 233345666667766543 33355555432
Q ss_pred CCCCCHHHHHHHH
Q 019402 232 WETDNVEEIALKI 244 (341)
Q Consensus 232 ~~~~~~~~~~~~l 244 (341)
.+...+.++.+
T Consensus 158 --~~~vl~~~~~l 168 (260)
T COG1180 158 --NEPVLENLELL 168 (260)
T ss_pred --cHHHHHHHHHH
Confidence 34445566666
No 96
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=69.61 E-value=17 Score=31.01 Aligned_cols=50 Identities=18% Similarity=0.113 Sum_probs=39.3
Q ss_pred cceEEEEeccccccCHHHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCCCCcEEE
Q 019402 157 KAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVF 217 (341)
Q Consensus 157 ~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~ 217 (341)
..|.+.++|.. ++..+.+.++++.+|+..+|+++.|++.. .+.+++|.++
T Consensus 27 gtdai~vGGS~-~vt~~~~~~~v~~ik~~~lPvilfp~~~~----------~i~~~aDa~l 76 (223)
T TIGR01768 27 GTDAILIGGSQ-GVTYEKTDTLIEALRRYGLPIILFPSNPT----------NVSRDADALF 76 (223)
T ss_pred CCCEEEEcCCC-cccHHHHHHHHHHHhccCCCEEEeCCCcc----------ccCcCCCEEE
Confidence 46999999853 56778899999999999999999987644 4556777665
No 97
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=68.37 E-value=26 Score=28.98 Aligned_cols=68 Identities=15% Similarity=0.172 Sum_probs=46.6
Q ss_pred cceEEEEeccccccCHHHHHHHHHHHHhcCCeEEEeCCcHHHHhh-hhHHHH-------h-hCCCCcEEEcCHHHHHHHH
Q 019402 157 KAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEF-FREPQE-------K-ALPYMDYVFGNETEARTFA 227 (341)
Q Consensus 157 ~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~-~~~~~~-------~-~l~~~dil~~n~~E~~~l~ 227 (341)
+.|++++-+.. ....+..+++..+..|.++++|+.+..|... |....+ . ...++|.++...++.+...
T Consensus 92 ~~~ii~ilg~~---~g~~~~~~~r~~~~~g~~v~vN~DGlEWkR~KW~~~~k~~lk~~E~~avk~ad~lIaDs~~I~~y~ 168 (185)
T PF09314_consen 92 KYDIILILGYG---IGPFFLPFLRKLRKKGGKVVVNMDGLEWKRAKWGRPAKKYLKFSEKLAVKYADRLIADSKGIQDYI 168 (185)
T ss_pred cCCEEEEEcCC---ccHHHHHHHHhhhhcCCcEEECCCcchhhhhhcCHHHHHHHHHHHHHHHHhCCEEEEcCHHHHHHH
Confidence 35788887643 2346778888888999999999999888654 222222 2 2357899998777655543
No 98
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=65.39 E-value=24 Score=30.37 Aligned_cols=52 Identities=10% Similarity=0.006 Sum_probs=39.8
Q ss_pred hhcceEEEEeccccccCHHHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCCCCcEEE
Q 019402 155 VEKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVF 217 (341)
Q Consensus 155 ~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~ 217 (341)
....|.+.++|.. ++..+.+.++++.+|+..+|+++.|++.. .+-+++|.++
T Consensus 30 ~~gtdai~vGGS~-~vt~~~~~~~v~~ik~~~lPvilfp~~~~----------~i~~~aDa~l 81 (232)
T PRK04169 30 ESGTDAIIVGGSD-GVTEENVDELVKAIKEYDLPVILFPGNIE----------GISPGADAYL 81 (232)
T ss_pred hcCCCEEEEcCCC-ccchHHHHHHHHHHhcCCCCEEEeCCCcc----------ccCcCCCEEE
Confidence 3557999999853 46678889999999988889999887644 4556677665
No 99
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=62.57 E-value=30 Score=26.14 Aligned_cols=39 Identities=13% Similarity=0.200 Sum_probs=29.9
Q ss_pred hhhhcceEEEEeccccccCHHHHHHHHHHHHhcCCeEEEeCCcHH
Q 019402 153 SIVEKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPF 197 (341)
Q Consensus 153 ~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~ 197 (341)
+.+.+.|+++++ .+.+...++...+.+.|+ .++|.++..
T Consensus 62 ~~~~~~Dvvf~a-----~~~~~~~~~~~~~~~~g~-~ViD~s~~~ 100 (121)
T PF01118_consen 62 EELSDVDVVFLA-----LPHGASKELAPKLLKAGI-KVIDLSGDF 100 (121)
T ss_dssp HHHTTESEEEE------SCHHHHHHHHHHHHHTTS-EEEESSSTT
T ss_pred hHhhcCCEEEec-----CchhHHHHHHHHHhhCCc-EEEeCCHHH
Confidence 556899999996 466778888888888888 557887654
No 100
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=62.05 E-value=31 Score=28.29 Aligned_cols=45 Identities=11% Similarity=0.141 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCCCCcEEE
Q 019402 173 ESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVF 217 (341)
Q Consensus 173 ~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~ 217 (341)
+.+..+++.+.+.+.++++=-+.+...+...+.+.+-.+...+.-
T Consensus 35 dl~~~l~~~~~~~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g 79 (177)
T TIGR00696 35 DLMEELCQRAGKEKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVG 79 (177)
T ss_pred HHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 566777777777776665555555443334444555555555543
No 101
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=61.31 E-value=34 Score=27.85 Aligned_cols=44 Identities=11% Similarity=0.073 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCCCCcEE
Q 019402 173 ESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYV 216 (341)
Q Consensus 173 ~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dil 216 (341)
+.+..+++.+.+.+.++++=-+.+.......+.+.+..+..+++
T Consensus 35 dl~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~iv 78 (172)
T PF03808_consen 35 DLFPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIV 78 (172)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEE
Confidence 55666666666666665554444443333333455555555554
No 102
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=60.96 E-value=36 Score=30.28 Aligned_cols=56 Identities=20% Similarity=0.117 Sum_probs=39.3
Q ss_pred eEEEEeccccccCHHHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCCCCcEEEc
Q 019402 159 KYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFG 218 (341)
Q Consensus 159 ~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~~ 218 (341)
..|.++|-.+-+.++.+.++++.+++.|..+.++..+... .+.+.++++..|++.+
T Consensus 127 ~~V~~sGGEPll~~~~l~~l~~~~k~~g~~~~i~TnG~~~----~~~~~~ll~~~d~~~i 182 (295)
T TIGR02494 127 GGVTLSGGEPLLQPEFALALLQACHERGIHTAVETSGFTP----WETIEKVLPYVDLFLF 182 (295)
T ss_pred CcEEeeCcchhchHHHHHHHHHHHHHcCCcEeeeCCCCCC----HHHHHHHHhhCCEEEE
Confidence 4677777545567788889999999999888887766432 2335566666777554
No 103
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=59.99 E-value=28 Score=31.09 Aligned_cols=79 Identities=11% Similarity=-0.048 Sum_probs=50.0
Q ss_pred ccCCcccCCCchhHh----hhhcceEEEEeccccc-----cCHHHHHHHHHHHHhcCCeEEEeCCcHHHHh-hhhHHHHh
Q 019402 139 NCYKSEHLKRPEIWS----IVEKAKYYYIAGFFLT-----VSPESIQMVAEHAAAKNKVFMMNLSAPFICE-FFREPQEK 208 (341)
Q Consensus 139 ~~~~~~~~~~~~~~~----~~~~~~~v~i~~~~~~-----~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~-~~~~~~~~ 208 (341)
..++++++.. ... ...+..+|+++..+.. .+.+.+..+.+.|+++|+++.+|-....... .....+.+
T Consensus 104 G~l~~~~l~~--~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~~a~~~~~~~~~e 181 (290)
T PF01212_consen 104 GKLTPEDLEA--AIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGARLANAAAALGVSLAE 181 (290)
T ss_dssp TBB-HHHHHH--HHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETTHHHHHCHHHHHHHH
T ss_pred CCCCHHHHHH--HhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHHHhhhcccccHHH
Confidence 4566666654 111 1245788898876532 3568999999999999999999986432221 12344667
Q ss_pred hCCCCcEEEcC
Q 019402 209 ALPYMDYVFGN 219 (341)
Q Consensus 209 ~l~~~dil~~n 219 (341)
+..++|.+.++
T Consensus 182 ~~~~~D~v~~~ 192 (290)
T PF01212_consen 182 IAAGADSVSFG 192 (290)
T ss_dssp HHTTSSEEEEE
T ss_pred HhhhCCEEEEE
Confidence 77888888763
No 104
>COG1159 Era GTPase [General function prediction only]
Probab=58.71 E-value=89 Score=27.92 Aligned_cols=109 Identities=7% Similarity=0.027 Sum_probs=55.6
Q ss_pred CCceEEEEeecCCchhHH-HHHHHHhcCCceeEeecCCCCcceEEEEEe-CCeeceeecccccccCCcccCCC---chhH
Q 019402 78 PGATSYIGCIGKDKFGEE-MKKNSTAAGVNVKYYEDESAPTGTCAVCVV-GGERSLVANLSAANCYKSEHLKR---PEIW 152 (341)
Q Consensus 78 g~~v~li~~vG~D~~g~~-i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~---~~~~ 152 (341)
+.++.+++.+|....|+. +.+.+-.. +++-+......|+..+.-+. +++..+++...+.-+-....+.. ...+
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~--KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~ 80 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLNALVGQ--KISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAAR 80 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHHHHhcC--ceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHH
Confidence 368899999999888876 66666433 33333333333444443332 33443333322222222222222 2345
Q ss_pred hhhhcceEEEEeccccccCHHHHHHHHHHHHhcCCe
Q 019402 153 SIVEKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKV 188 (341)
Q Consensus 153 ~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (341)
+.++++|++.+--....-....-..+++..+....+
T Consensus 81 ~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~p 116 (298)
T COG1159 81 SALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTP 116 (298)
T ss_pred HHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCC
Confidence 778899988875433221122344555555554334
No 105
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=58.61 E-value=1.1e+02 Score=28.39 Aligned_cols=96 Identities=10% Similarity=0.105 Sum_probs=54.4
Q ss_pred ceEEEEeecCCchhHHHHH-HHHhcCCceeEee-cCCCCcceEEEEEeCCeeceeecccccccCCcccCCCchhHhhhhc
Q 019402 80 ATSYIGCIGKDKFGEEMKK-NSTAAGVNVKYYE-DESAPTGTCAVCVVGGERSLVANLSAANCYKSEHLKRPEIWSIVEK 157 (341)
Q Consensus 80 ~v~li~~vG~D~~g~~i~~-~l~~~gi~~~~~~-~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (341)
++.++|.-| .-|+.+.+ .|++..+....+. ......+.....+ .|+ ......+.. .+.+.+
T Consensus 3 ~VAIVGATG--~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f-~g~-----------~~~v~~~~~---~~~~~~ 65 (369)
T PRK06598 3 KVGFVGWRG--MVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSF-GGK-----------EGTLQDAFD---IDALKK 65 (369)
T ss_pred EEEEEeCCC--HHHHHHHHHHHhCCCCCcCcEEEecchhhCCccccc-CCC-----------cceEEecCC---hhHhcC
Confidence 456666655 67888887 8887777644332 1111111111111 111 011111111 134567
Q ss_pred ceEEEEeccccccCHHHHHHHHHHHHhcCCe-EEEeCCcHH
Q 019402 158 AKYYYIAGFFLTVSPESIQMVAEHAAAKNKV-FMMNLSAPF 197 (341)
Q Consensus 158 ~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~-v~~d~~~~~ 197 (341)
.|+++++ .+.+...++...+.+.|.+ +++|.++..
T Consensus 66 ~Divf~a-----~~~~~s~~~~~~~~~aG~~~~VID~Ss~f 101 (369)
T PRK06598 66 LDIIITC-----QGGDYTNEVYPKLRAAGWQGYWIDAASTL 101 (369)
T ss_pred CCEEEEC-----CCHHHHHHHHHHHHhCCCCeEEEECChHH
Confidence 9999885 3567888888888888985 789998654
No 106
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=55.40 E-value=25 Score=29.83 Aligned_cols=52 Identities=19% Similarity=0.209 Sum_probs=40.6
Q ss_pred cceEEEEeccccccCHHHHHHHHHHHHhcCCe--EEEeCCcHHHHhhhhHHHHhhCCCCcEEEc
Q 019402 157 KAKYYYIAGFFLTVSPESIQMVAEHAAAKNKV--FMMNLSAPFICEFFREPQEKALPYMDYVFG 218 (341)
Q Consensus 157 ~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~--v~~d~~~~~~~~~~~~~~~~~l~~~dil~~ 218 (341)
.+|++.+-. + ......+++++.|+.|++ ++++|..+. +.+..+++.+|++.+
T Consensus 84 gad~It~H~---E-~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~------~~i~~~l~~vD~Vll 137 (220)
T COG0036 84 GADIITFHA---E-ATEHIHRTIQLIKELGVKAGLVLNPATPL------EALEPVLDDVDLVLL 137 (220)
T ss_pred CCCEEEEEe---c-cCcCHHHHHHHHHHcCCeEEEEECCCCCH------HHHHHHHhhCCEEEE
Confidence 468887754 3 345678888999999988 789998776 568889999998873
No 107
>PHA00438 hypothetical protein
Probab=54.00 E-value=10 Score=25.99 Aligned_cols=16 Identities=44% Similarity=0.841 Sum_probs=14.5
Q ss_pred CCcchhhHHHHHHHHh
Q 019402 292 NGAGDAFVGGFLSQLV 307 (341)
Q Consensus 292 tGAGDaf~a~~~~~l~ 307 (341)
-|..++|+|||++|+.
T Consensus 47 ~G~SE~~IaGfl~Gl~ 62 (81)
T PHA00438 47 AGYSEAFIAGFLAGLQ 62 (81)
T ss_pred cCCcHHHHHHHHHHHH
Confidence 6899999999999984
No 108
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=53.81 E-value=47 Score=28.92 Aligned_cols=101 Identities=17% Similarity=0.212 Sum_probs=64.8
Q ss_pred chhHhhhhcceEEEEecccccc---------------CHHHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCCCC
Q 019402 149 PEIWSIVEKAKYYYIAGFFLTV---------------SPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYM 213 (341)
Q Consensus 149 ~~~~~~~~~~~~v~i~~~~~~~---------------~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~ 213 (341)
.+..+.++++++++.+|..... ..+.+..+++.+.+.+.+|.+=-+.+.......+.+.+-.+..
T Consensus 56 ~e~~~~i~~A~li~pDG~gvV~~ar~~~g~~~~~rv~G~Dl~~~Ll~~a~~~~~~vfllGgkp~V~~~a~~~l~~~~p~l 135 (253)
T COG1922 56 PEFREILNQADLILPDGIGVVRAARRLLGQPLPERVAGTDLVEALLKRAAEEGKRVFLLGGKPGVAEQAAAKLRAKYPGL 135 (253)
T ss_pred HHHHHHHhhcCEEccCchhHHHHHHHHhCccCcccCChHHHHHHHHHHhCccCceEEEecCCHHHHHHHHHHHHHHCCCc
Confidence 4456788899999999875311 1267889999999888888777666665555555566777777
Q ss_pred cEEEcCHHHHHHHHhhcCCCCCCHHHHHHHHhcCCCCCCCCccEEEEeeCC
Q 019402 214 DYVFGNETEARTFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGA 264 (341)
Q Consensus 214 dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vvvt~G~ 264 (341)
+++-...-- +. .+..+...+.+ ...+++.++|=+|.
T Consensus 136 ~ivg~h~GY----f~-----~~e~~~i~~~I------~~s~pdil~VgmG~ 171 (253)
T COG1922 136 KIVGSHDGY----FD-----PEEEEAIVERI------AASGPDILLVGMGV 171 (253)
T ss_pred eEEEecCCC----CC-----hhhHHHHHHHH------HhcCCCEEEEeCCC
Confidence 776654311 00 11113555556 44556777777765
No 109
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=53.06 E-value=86 Score=25.48 Aligned_cols=103 Identities=16% Similarity=0.186 Sum_probs=54.5
Q ss_pred chhHHHHHHHHhcCCceeEee-----cCCCCcceEEEEEeCCeeceeecccccc-cC-----CcccCC---CchhHhhhh
Q 019402 91 KFGEEMKKNSTAAGVNVKYYE-----DESAPTGTCAVCVVGGERSLVANLSAAN-CY-----KSEHLK---RPEIWSIVE 156 (341)
Q Consensus 91 ~~g~~i~~~l~~~gi~~~~~~-----~~~~~t~~~~~~~~~g~~~~~~~~~~~~-~~-----~~~~~~---~~~~~~~~~ 156 (341)
..-..+.+.|++.|.++-++. ..+..+++.++-++.|++..+..-+... .+ ..+.+. .+....+++
T Consensus 20 Tl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v~~le~i~~~al~rA~~ 99 (179)
T COG1618 20 TLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNVEGLEEIAIPALRRALE 99 (179)
T ss_pred HHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeHHHHHHHhHHHHHHHhh
Confidence 455667888898988776642 2333344454444467777665433211 01 111111 122234556
Q ss_pred cceEEEEecccc-ccCHHHHHHHHHHHHhcCCeEEEeC
Q 019402 157 KAKYYYIAGFFL-TVSPESIQMVAEHAAAKNKVFMMNL 193 (341)
Q Consensus 157 ~~~~v~i~~~~~-~~~~~~~~~~~~~~~~~~~~v~~d~ 193 (341)
.+|++.++-..+ +.--....++++..-..+.++.+-+
T Consensus 100 ~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpliatl 137 (179)
T COG1618 100 EADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLIATL 137 (179)
T ss_pred cCCEEEEecccchhhccHHHHHHHHHHhcCCCcEEEEE
Confidence 789999996553 2222345555555555666654444
No 110
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=52.26 E-value=1.8e+02 Score=26.35 Aligned_cols=90 Identities=8% Similarity=0.019 Sum_probs=53.1
Q ss_pred ceEEEEeecCCchhHHHHHHHHhcCCceeEeec--CC-CCcceEEEEEeCCeeceeecccccccCCcccCCCchhHhhhh
Q 019402 80 ATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYED--ES-APTGTCAVCVVGGERSLVANLSAANCYKSEHLKRPEIWSIVE 156 (341)
Q Consensus 80 ~v~li~~vG~D~~g~~i~~~l~~~gi~~~~~~~--~~-~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (341)
++.+ |.-| .-|+.+++.|++.+.....++. .. ...+..+ .+ +|+. ++.+.+.. ..++
T Consensus 5 ~iAi-GATg--~VG~~~l~~Leer~fpv~~l~l~~s~~~s~gk~i-~f-~g~~-----------~~V~~l~~----~~f~ 64 (322)
T PRK06901 5 NIAI-AAEF--ELSEKLLEALEQSDLEIEQISIVEIEPFGEEQGI-RF-NNKA-----------VEQIAPEE----VEWA 64 (322)
T ss_pred eEEE-ecCc--HHHHHHHHHHHhcCCchhheeecccccccCCCEE-EE-CCEE-----------EEEEECCc----cCcc
Confidence 4445 6555 5799999999999998875532 11 2233222 22 2222 22223332 3456
Q ss_pred cceEEEEeccccccCHHHHHHHHHHHHhcCCeEEEeCCcH
Q 019402 157 KAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAP 196 (341)
Q Consensus 157 ~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~ 196 (341)
+.|++.+.+ .+...++...+.+.|..+ +|-++.
T Consensus 65 ~vDia~fag------~~~s~~~ap~a~~aG~~V-IDnSsa 97 (322)
T PRK06901 65 DFNYVFFAG------KMAQAEHLAQAAEAGCIV-IDLYGI 97 (322)
T ss_pred cCCEEEEcC------HHHHHHHHHHHHHCCCEE-EECChH
Confidence 799988832 356777788888888776 455443
No 111
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=50.76 E-value=62 Score=27.56 Aligned_cols=60 Identities=15% Similarity=0.063 Sum_probs=38.9
Q ss_pred eEEEEeccccccCHHHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCCCCcEEEcCH
Q 019402 159 KYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNE 220 (341)
Q Consensus 159 ~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~~n~ 220 (341)
+.|.++|-.+-+.++.+.++++.+++.|..+.+...+... . ..+.+.++++..|.+.++.
T Consensus 67 ~~I~~~GGEPll~~~~~~~li~~~~~~g~~~~i~TNG~~~-~-~~~~~~~ll~~~d~v~isl 126 (235)
T TIGR02493 67 GGVTFSGGEPLLQPEFLSELFKACKELGIHTCLDTSGFLG-G-CTEAADELLEYTDLVLLDI 126 (235)
T ss_pred CeEEEeCcccccCHHHHHHHHHHHHHCCCCEEEEcCCCCC-c-cHHHHHHHHHhCCEEEEeC
Confidence 4677777555667788889999999999887777655221 0 1233445556667666543
No 112
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=49.38 E-value=71 Score=27.26 Aligned_cols=133 Identities=16% Similarity=0.055 Sum_probs=66.8
Q ss_pred ecCCchhHHHHHHHHhcCCceeEeecCCCCcceEEEEEeCCeeceeecccccccCCcccCCCchhHhhhhcceEEEEecc
Q 019402 87 IGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVVGGERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYIAGF 166 (341)
Q Consensus 87 vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~ 166 (341)
+|++.....+.+.|++.+.+.........+........ ......... .......... ....+.+.+++.|.
T Consensus 2 ~GD~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~----~~~~~~~~vii~GG 72 (286)
T PF04230_consen 2 IGDDLILEALLKLLKKHGPDAEIIIFSPDPDEFSKYYK-NKSIFNIDL----SKLWRKRRRK----SKIKNADDVIIGGG 72 (286)
T ss_pred chHHHHHHHHHHHHHhcCCceEEEEeCCChHHHHHHhc-ccccchhhh----hhhhhhhhcc----cccccCCeEEEECC
Confidence 58888888899999999987776643322111110000 000000000 0000000000 00035566666654
Q ss_pred c----cccCHH---HHHHHHHHHHhcCCeEEEeCCc--HHHHhhhhHHHHhhCCCCcEEEcCHHHHHHHHh
Q 019402 167 F----LTVSPE---SIQMVAEHAAAKNKVFMMNLSA--PFICEFFREPQEKALPYMDYVFGNETEARTFAK 228 (341)
Q Consensus 167 ~----~~~~~~---~~~~~~~~~~~~~~~v~~d~~~--~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~ 228 (341)
. ...... ........++..++++++-..+ +......+.....++++++++.+-++....+..
T Consensus 73 g~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~g~g~gp~~~~~~~~~~~~~l~~~~~i~vRD~~S~~~l~ 143 (286)
T PF04230_consen 73 GGSDNNFIDLWSLPIFLRWLFLAKKLGKPVIILGQGIGPFRSEEFKKLLRRILSKADYISVRDEYSYELLK 143 (286)
T ss_pred cccccCCCcchhhHHHHHHHHHHHhcCCCeEEECceECccCCHHHHHHHHHHHhCCCEEEECCHHHHHHHH
Confidence 1 111111 2366667777888885554432 222333556688899999998887776555443
No 113
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=48.11 E-value=32 Score=27.37 Aligned_cols=59 Identities=14% Similarity=0.068 Sum_probs=37.0
Q ss_pred eEEEEeccccccCH--HHHHHHHHHHHhc-CCeEEEeCCcHHHHhhhh-HHHHhhCCCCcEEE
Q 019402 159 KYYYIAGFFLTVSP--ESIQMVAEHAAAK-NKVFMMNLSAPFICEFFR-EPQEKALPYMDYVF 217 (341)
Q Consensus 159 ~~v~i~~~~~~~~~--~~~~~~~~~~~~~-~~~v~~d~~~~~~~~~~~-~~~~~~l~~~dil~ 217 (341)
..|.++|-.+-+.+ +.+.++++.+++. +...+++.++....+... ....++++++|+++
T Consensus 65 ~gVt~sGGEPllq~~~~~l~~ll~~~k~~~~~~~~~~~tG~~~~~~~~~~~~~~~l~~~D~li 127 (154)
T TIGR02491 65 DGLTLSGGDPLYPRNVEELIELVKKIKAEFPEKDIWLWTGYTWEEILEDEKHLEVLKYIDVLV 127 (154)
T ss_pred CeEEEeChhhCCCCCHHHHHHHHHHHHHhCCCCCEEEeeCccHHHHhcchhHHHHHhhCCEEE
Confidence 45777765554544 7899999999976 556556666654322211 11236889999764
No 114
>PF10911 DUF2717: Protein of unknown function (DUF2717); InterPro: IPR020121 The proteins in this entry are uncharacterised.
Probab=47.45 E-value=15 Score=25.22 Aligned_cols=19 Identities=26% Similarity=0.527 Sum_probs=15.8
Q ss_pred CCCCcchhhHHHHHHHHhc
Q 019402 290 DTNGAGDAFVGGFLSQLVQ 308 (341)
Q Consensus 290 dttGAGDaf~a~~~~~l~~ 308 (341)
...|+.++|++||+.|+..
T Consensus 45 r~~G~SE~~I~Gfl~Gl~~ 63 (77)
T PF10911_consen 45 RKQGWSESYILGFLAGLQY 63 (77)
T ss_pred HHccccHHHHHHHHHHHHH
Confidence 3469999999999999843
No 115
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=47.24 E-value=52 Score=28.19 Aligned_cols=41 Identities=17% Similarity=0.161 Sum_probs=33.5
Q ss_pred hcceEEEEeccccccCHHHHHHHHHHHH-hcCCeEEEeCCcHH
Q 019402 156 EKAKYYYIAGFFLTVSPESIQMVAEHAA-AKNKVFMMNLSAPF 197 (341)
Q Consensus 156 ~~~~~v~i~~~~~~~~~~~~~~~~~~~~-~~~~~v~~d~~~~~ 197 (341)
...|.+.++|.. .+..+.+.++++.+| +.+.|+++.|+++.
T Consensus 40 ~GTDaImIGGS~-gvt~~~~~~~v~~ik~~~~lPvilfP~~~~ 81 (240)
T COG1646 40 AGTDAIMIGGSD-GVTEENVDNVVEAIKERTDLPVILFPGSPS 81 (240)
T ss_pred cCCCEEEECCcc-cccHHHHHHHHHHHHhhcCCCEEEecCChh
Confidence 457999999853 566678889999998 88899999998754
No 116
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=46.86 E-value=32 Score=29.96 Aligned_cols=31 Identities=19% Similarity=0.124 Sum_probs=20.8
Q ss_pred CCCHHHHHHHHhcCCCCCCCCccEEEEeeCCCCEEEE
Q 019402 234 TDNVEEIALKISQWPKASGTHKRITVITQGADPVVVA 270 (341)
Q Consensus 234 ~~~~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~ 270 (341)
.++.+++++.+ ...+.+.|++|.|++..-.+
T Consensus 115 v~~~~eA~~~l------~~~~~~~iflttGsk~L~~f 145 (249)
T PF02571_consen 115 VDSYEEAAELL------KELGGGRIFLTTGSKNLPPF 145 (249)
T ss_pred eCCHHHHHHHH------hhcCCCCEEEeCchhhHHHH
Confidence 45667777777 33445779999999765433
No 117
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=46.85 E-value=1.5e+02 Score=28.23 Aligned_cols=38 Identities=13% Similarity=0.153 Sum_probs=24.9
Q ss_pred cceEEEEecccccc-CHHHHHHHHHHHHhcCCeEEEeCC
Q 019402 157 KAKYYYIAGFFLTV-SPESIQMVAEHAAAKNKVFMMNLS 194 (341)
Q Consensus 157 ~~~~v~i~~~~~~~-~~~~~~~~~~~~~~~~~~v~~d~~ 194 (341)
+.+.|++....... ..--+..+.+.|+++|+.++.|-.
T Consensus 147 ~Tk~I~~e~pgnP~~~v~Di~~I~~iA~~~gi~livD~T 185 (432)
T PRK06702 147 KTKLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIVDNT 185 (432)
T ss_pred CCeEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEECC
Confidence 45677765432111 111378888999999999999875
No 118
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=46.64 E-value=74 Score=26.91 Aligned_cols=112 Identities=10% Similarity=0.012 Sum_probs=62.9
Q ss_pred HHHHHHHHHhCCCCceEEEEeecCCchhHHHHHHHHhcCCceeEee-cCCCCcceEEEEEeCCeeceee-cccccccCCc
Q 019402 66 NSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYE-DESAPTGTCAVCVVGGERSLVA-NLSAANCYKS 143 (341)
Q Consensus 66 n~a~~l~~l~~lg~~v~li~~vG~D~~g~~i~~~l~~~gi~~~~~~-~~~~~t~~~~~~~~~g~~~~~~-~~~~~~~~~~ 143 (341)
+..-++.+|-+++..|.|++.--.+ .-+.+.+.|++.|++++--. ...-+.... ++..++-|-++. ...+...|..
T Consensus 27 ga~eAl~rLr~~~~kVkFvTNttk~-Sk~~l~~rL~rlgf~v~eeei~tsl~aa~~-~~~~~~lrP~l~v~d~a~~dF~g 104 (262)
T KOG3040|consen 27 GAVEALKRLRDQHVKVKFVTNTTKE-SKRNLHERLQRLGFDVSEEEIFTSLPAARQ-YLEENQLRPYLIVDDDALEDFDG 104 (262)
T ss_pred CHHHHHHHHHhcCceEEEEecCcch-hHHHHHHHHHHhCCCccHHHhcCccHHHHH-HHHhcCCCceEEEcccchhhCCC
Confidence 3566777766578999999987775 45678999999999997643 222221111 111233343322 2233233322
Q ss_pred ccCCCchhHhhhhcceEEEEeccccccCHHHHHHHHHHHHhcCCe
Q 019402 144 EHLKRPEIWSIVEKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKV 188 (341)
Q Consensus 144 ~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (341)
.+- +..++|++.-..-..+.+.+-++.+.+.+...+
T Consensus 105 idT---------s~pn~VViglape~F~y~~ln~AFrvL~e~~k~ 140 (262)
T KOG3040|consen 105 IDT---------SDPNCVVIGLAPEGFSYQRLNRAFRVLLEMKKP 140 (262)
T ss_pred ccC---------CCCCeEEEecCcccccHHHHHHHHHHHHcCCCC
Confidence 221 245666664322234567777777777766543
No 119
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=45.55 E-value=2.5e+02 Score=25.84 Aligned_cols=95 Identities=16% Similarity=0.207 Sum_probs=53.4
Q ss_pred CCceEEEEeecCCchhHHHHHHHHhcCCceeEee--cCCCCcceEEEEEeCCeeceeecccccccCCcccCCCchhHhhh
Q 019402 78 PGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYE--DESAPTGTCAVCVVGGERSLVANLSAANCYKSEHLKRPEIWSIV 155 (341)
Q Consensus 78 g~~v~li~~vG~D~~g~~i~~~l~~~gi~~~~~~--~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (341)
+.++.++|.-| .-|..+.+.|.+.+.....+. ......+..+-. .+ ..+..+.+.. +.+
T Consensus 7 ~~kVaVvGAtG--~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~--~~-----------~~~~v~~~~~----~~~ 67 (344)
T PLN02383 7 GPSVAIVGVTG--AVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTF--EG-----------RDYTVEELTE----DSF 67 (344)
T ss_pred CCeEEEEcCCC--hHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeee--cC-----------ceeEEEeCCH----HHH
Confidence 36777888766 579999999987554333221 112222222211 11 1111222221 345
Q ss_pred hcceEEEEeccccccCHHHHHHHHHHHHhcCCeEEEeCCcHH
Q 019402 156 EKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPF 197 (341)
Q Consensus 156 ~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~ 197 (341)
.++|+++++ .+.+...++...+.+.|++ ++|.++.+
T Consensus 68 ~~~D~vf~a-----~p~~~s~~~~~~~~~~g~~-VIDlS~~f 103 (344)
T PLN02383 68 DGVDIALFS-----AGGSISKKFGPIAVDKGAV-VVDNSSAF 103 (344)
T ss_pred cCCCEEEEC-----CCcHHHHHHHHHHHhCCCE-EEECCchh
Confidence 679999885 3456677777777777764 57887654
No 120
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=45.17 E-value=1.9e+02 Score=26.80 Aligned_cols=96 Identities=7% Similarity=0.076 Sum_probs=54.0
Q ss_pred ceEEEEeecCCchhHHHHHHHH-hcCCceeEee-cCCCCcceEEEEEeCCeeceeecccccccCCcccCCCchhHhhhhc
Q 019402 80 ATSYIGCIGKDKFGEEMKKNST-AAGVNVKYYE-DESAPTGTCAVCVVGGERSLVANLSAANCYKSEHLKRPEIWSIVEK 157 (341)
Q Consensus 80 ~v~li~~vG~D~~g~~i~~~l~-~~gi~~~~~~-~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (341)
++.++|.-| .-|+.+.+.|+ +..+....++ ......+...+.+ +|+ ....+.+.. .+.+.+
T Consensus 2 ~VavvGATG--~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~f-~~~-----------~~~v~~~~~---~~~~~~ 64 (366)
T TIGR01745 2 NVGLVGWRG--MVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSF-GGT-----------TGTLQDAFD---IDALKA 64 (366)
T ss_pred eEEEEcCcC--HHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCCC-CCC-----------cceEEcCcc---cccccC
Confidence 355666655 67999999888 5566543332 1111111111111 111 111222221 124568
Q ss_pred ceEEEEeccccccCHHHHHHHHHHHHhcCCe-EEEeCCcHH
Q 019402 158 AKYYYIAGFFLTVSPESIQMVAEHAAAKNKV-FMMNLSAPF 197 (341)
Q Consensus 158 ~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~-v~~d~~~~~ 197 (341)
.|++.++. +.+...++...++++|.+ +++|-++..
T Consensus 65 vDivffa~-----g~~~s~~~~p~~~~aG~~~~VIDnSSa~ 100 (366)
T TIGR01745 65 LDIIITCQ-----GGDYTNEIYPKLRESGWQGYWIDAASSL 100 (366)
T ss_pred CCEEEEcC-----CHHHHHHHHHHHHhCCCCeEEEECChhh
Confidence 89999853 556888888999999975 778887654
No 121
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=45.03 E-value=1.9e+02 Score=27.07 Aligned_cols=94 Identities=14% Similarity=0.160 Sum_probs=54.2
Q ss_pred HHHHhCCCCceEEEEeecCCchhHHHHHHHHhcCCceeEeecCCCCcceEEEEEeCCeeceeecccccccCCcccCCCch
Q 019402 71 AQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVVGGERSLVANLSAANCYKSEHLKRPE 150 (341)
Q Consensus 71 l~~l~~lg~~v~li~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 150 (341)
+..+...|.+|..+. -| .||+.+.+.++..|.++..+..+. | ..++++.+..
T Consensus 73 v~sl~~pgdkVLv~~-nG--~FG~R~~~ia~~~g~~v~~~~~~w------------g-----------~~v~p~~v~~-- 124 (383)
T COG0075 73 VASLVEPGDKVLVVV-NG--KFGERFAEIAERYGAEVVVLEVEW------------G-----------EAVDPEEVEE-- 124 (383)
T ss_pred HHhccCCCCeEEEEe-CC--hHHHHHHHHHHHhCCceEEEeCCC------------C-----------CCCCHHHHHH--
Confidence 334565566665554 23 699999999999999987764321 1 1233333332
Q ss_pred hHh---hhhcceEEEEeccccccCHHHHHHHHHHHHhcCCeEEEeCC
Q 019402 151 IWS---IVEKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLS 194 (341)
Q Consensus 151 ~~~---~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~ 194 (341)
.++ .++-.-++|....+-..+ -+.++.+.+|+++..+++|--
T Consensus 125 ~L~~~~~~~~V~~vH~ETSTGvln--pl~~I~~~~k~~g~l~iVDaV 169 (383)
T COG0075 125 ALDKDPDIKAVAVVHNETSTGVLN--PLKEIAKAAKEHGALLIVDAV 169 (383)
T ss_pred HHhcCCCccEEEEEeccCcccccC--cHHHHHHHHHHcCCEEEEEec
Confidence 111 122233444443332222 467788888888999888863
No 122
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=44.57 E-value=89 Score=24.70 Aligned_cols=56 Identities=9% Similarity=-0.024 Sum_probs=42.1
Q ss_pred eEEEEeccccccCHHHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCCCCcEEEcCHH
Q 019402 159 KYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNET 221 (341)
Q Consensus 159 ~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~~n~~ 221 (341)
+.|.++|-. ...+.+.++++.+++.|.++.++..... .+...+++++.|+++...-
T Consensus 63 ~gVt~SGGE--l~~~~l~~ll~~lk~~Gl~i~l~Tg~~~-----~~~~~~il~~iD~l~~g~y 118 (147)
T TIGR02826 63 SCVLFLGGE--WNREALLSLLKIFKEKGLKTCLYTGLEP-----KDIPLELVQHLDYLKTGRW 118 (147)
T ss_pred CEEEEechh--cCHHHHHHHHHHHHHCCCCEEEECCCCC-----HHHHHHHHHhCCEEEEChH
Confidence 567787765 6667899999999999999888865322 1345677889999998764
No 123
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=44.31 E-value=48 Score=28.48 Aligned_cols=52 Identities=10% Similarity=0.121 Sum_probs=36.8
Q ss_pred cceEEEEeccccccCHHHHHHHHHHHHhcCCe--EEEeCCcHHHHhhhhHHHHhhCCCCcEEE
Q 019402 157 KAKYYYIAGFFLTVSPESIQMVAEHAAAKNKV--FMMNLSAPFICEFFREPQEKALPYMDYVF 217 (341)
Q Consensus 157 ~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~--v~~d~~~~~~~~~~~~~~~~~l~~~dil~ 217 (341)
.+|++.+-. +........+++.+|+.|.+ +.++|..+. +.+..+++.+|++.
T Consensus 82 Gad~it~H~---Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~~------~~l~~~l~~vD~VL 135 (229)
T PRK09722 82 GADFITLHP---ETINGQAFRLIDEIRRAGMKVGLVLNPETPV------ESIKYYIHLLDKIT 135 (229)
T ss_pred CCCEEEECc---cCCcchHHHHHHHHHHcCCCEEEEeCCCCCH------HHHHHHHHhcCEEE
Confidence 568777743 22223457788999999987 788887654 55778888888776
No 124
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=44.14 E-value=2.1e+02 Score=27.04 Aligned_cols=118 Identities=13% Similarity=0.144 Sum_probs=63.9
Q ss_pred eecCCchhHHHHHHHHhcCCceeEeecCCCCcceEEEEEeCCeeceeecccccccCCcccCCCchhHhhhhcceEEEEec
Q 019402 86 CIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVVGGERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYIAG 165 (341)
Q Consensus 86 ~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~ 165 (341)
.+|....|+.+.+.|.+.|+..-.+. ++ .-+|.. .-...+..+.+.-.+..+.+.++|+|+.+.
T Consensus 183 vIGAGem~~lva~~L~~~g~~~i~Ia--NR----------T~erA~----~La~~~~~~~~~l~el~~~l~~~DvVissT 246 (414)
T COG0373 183 VIGAGEMGELVAKHLAEKGVKKITIA--NR----------TLERAE----ELAKKLGAEAVALEELLEALAEADVVISST 246 (414)
T ss_pred EEcccHHHHHHHHHHHhCCCCEEEEE--cC----------CHHHHH----HHHHHhCCeeecHHHHHHhhhhCCEEEEec
Confidence 34555688999999999888554432 10 001110 000111111111122346889999999886
Q ss_pred ccc--ccCHHHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCCCCcEEEcCHHHHHHHHh
Q 019402 166 FFL--TVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAK 228 (341)
Q Consensus 166 ~~~--~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~ 228 (341)
..+ .++.+.+...++.-+. .+++|.+.|. +.-...-+.-++...+.++++....
T Consensus 247 sa~~~ii~~~~ve~a~~~r~~---~livDiavPR------die~~v~~l~~v~l~~iDDL~~iv~ 302 (414)
T COG0373 247 SAPHPIITREMVERALKIRKR---LLIVDIAVPR------DVEPEVGELPNVFLYTIDDLEEIVE 302 (414)
T ss_pred CCCccccCHHHHHHHHhcccC---eEEEEecCCC------CCCccccCcCCeEEEehhhHHHHHH
Confidence 542 3444555555443222 7889998765 2222233345677777777776654
No 125
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=42.72 E-value=1.7e+02 Score=24.00 Aligned_cols=84 Identities=19% Similarity=0.218 Sum_probs=55.4
Q ss_pred cceEEEEeccccccCHHHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCCCCcEEEcCHHHHHHHHhhcCCCCCC
Q 019402 157 KAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGWETDN 236 (341)
Q Consensus 157 ~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~ 236 (341)
+++++...|+ .++.+.+..+.+..+.+|+.+..||..+.. .-+..+.+.++.+--.+++.+++..=-+..|....+
T Consensus 22 d~~~I~T~Gs--~i~~~~i~~i~~~~~~rgVIIfTDpD~~Ge--kIRk~i~~~vp~~khafi~~~~a~~~~~~iGVE~As 97 (174)
T TIGR00334 22 DVDVIETNGS--ALKDETINLIKKAQKKQGVIILTDPDFPGE--KIRKKIEQHLPGYENCFIPKHLAKPNKKKIGVEEAS 97 (174)
T ss_pred CceEEEECCC--ccCHHHHHHHHHHhhcCCEEEEeCCCCchH--HHHHHHHHHCCCCeEEeeeHHhcCcCCCCcccCCCC
Confidence 5788888886 457788888888888899888777754321 134456777788888888888865201112344455
Q ss_pred HHHHHHHH
Q 019402 237 VEEIALKI 244 (341)
Q Consensus 237 ~~~~~~~l 244 (341)
+++..+.|
T Consensus 98 ~e~I~~AL 105 (174)
T TIGR00334 98 VEAIIAAL 105 (174)
T ss_pred HHHHHHHH
Confidence 66666666
No 126
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=42.06 E-value=32 Score=27.24 Aligned_cols=45 Identities=27% Similarity=0.248 Sum_probs=33.5
Q ss_pred hHhhhhcceEEEEeccccccCHHHHHHHHHHHHhcCCeEEEeCCcHH
Q 019402 151 IWSIVEKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPF 197 (341)
Q Consensus 151 ~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~ 197 (341)
..+.+..+|++.++|.++ -..++..+++.+++....+.+=++.+.
T Consensus 56 ~~~~l~~aD~viiTGsTl--vN~Ti~~iL~~~~~~~~vil~GpS~~~ 100 (147)
T PF04016_consen 56 AEEILPWADVVIITGSTL--VNGTIDDILELARNAREVILYGPSAPL 100 (147)
T ss_dssp HHHHGGG-SEEEEECHHC--CTTTHHHHHHHTTTSSEEEEESCCGGS
T ss_pred HHHHHccCCEEEEEeeee--ecCCHHHHHHhCccCCeEEEEecCchh
Confidence 457889999999999864 236788888888865556777787765
No 127
>PRK09028 cystathionine beta-lyase; Provisional
Probab=42.03 E-value=2.5e+02 Score=26.31 Aligned_cols=38 Identities=13% Similarity=0.241 Sum_probs=27.7
Q ss_pred cceEEEEeccc-cccCHHHHHHHHHHHHhcCCeEEEeCC
Q 019402 157 KAKYYYIAGFF-LTVSPESIQMVAEHAAAKNKVFMMNLS 194 (341)
Q Consensus 157 ~~~~v~i~~~~-~~~~~~~~~~~~~~~~~~~~~v~~d~~ 194 (341)
+.++++++.-+ +......+.++++.++++|+.+++|-.
T Consensus 146 ~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t 184 (394)
T PRK09028 146 NTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNT 184 (394)
T ss_pred CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECC
Confidence 57788887543 233346688889999999999888864
No 128
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=41.47 E-value=1.1e+02 Score=24.71 Aligned_cols=44 Identities=20% Similarity=0.147 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCCCCcEE
Q 019402 173 ESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYV 216 (341)
Q Consensus 173 ~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dil 216 (341)
+.+..+++.+.+++.++++=-+.+...+...+.+.+..+..+++
T Consensus 33 dl~~~ll~~~~~~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~ 76 (171)
T cd06533 33 DLMPALLELAAQKGLRVFLLGAKPEVLEKAAERLRARYPGLKIV 76 (171)
T ss_pred HHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCcEEE
Confidence 44555555555555444443333332222223344444444443
No 129
>PRK05968 hypothetical protein; Provisional
Probab=40.83 E-value=3e+02 Score=25.57 Aligned_cols=40 Identities=20% Similarity=0.209 Sum_probs=28.0
Q ss_pred hhcceEEEEeccc-cccCHHHHHHHHHHHHhcCCeEEEeCC
Q 019402 155 VEKAKYYYIAGFF-LTVSPESIQMVAEHAAAKNKVFMMNLS 194 (341)
Q Consensus 155 ~~~~~~v~i~~~~-~~~~~~~~~~~~~~~~~~~~~v~~d~~ 194 (341)
+.+.++|++..-+ ......-+.++.+.++++|+++++|-.
T Consensus 145 i~~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a 185 (389)
T PRK05968 145 LPGAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNS 185 (389)
T ss_pred cccCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECC
Confidence 3456777776433 233456788888888999998888864
No 130
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=40.74 E-value=74 Score=22.92 Aligned_cols=39 Identities=18% Similarity=0.073 Sum_probs=31.2
Q ss_pred hhhhcceEEEEeccccccCHHHHHHHHHHHHhcCCeEEEeC
Q 019402 153 SIVEKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNL 193 (341)
Q Consensus 153 ~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~ 193 (341)
..++++|+|++-.. .++-+....+-+.|++.++|+++--
T Consensus 44 ~~i~~aD~VIv~t~--~vsH~~~~~vk~~akk~~ip~~~~~ 82 (97)
T PF10087_consen 44 SKIKKADLVIVFTD--YVSHNAMWKVKKAAKKYGIPIIYSR 82 (97)
T ss_pred HhcCCCCEEEEEeC--CcChHHHHHHHHHHHHcCCcEEEEC
Confidence 45778999988543 5677889999999999999987765
No 131
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=40.24 E-value=2.6e+02 Score=24.68 Aligned_cols=81 Identities=12% Similarity=-0.014 Sum_probs=47.9
Q ss_pred hHhhhhcceEEEEeccccccC------HHHHHHHHHHHHhcCCeEEEeC-C-cHHHHhhhhHHHHhhCCCCcEEEcCHHH
Q 019402 151 IWSIVEKAKYYYIAGFFLTVS------PESIQMVAEHAAAKNKVFMMNL-S-APFICEFFREPQEKALPYMDYVFGNETE 222 (341)
Q Consensus 151 ~~~~~~~~~~v~i~~~~~~~~------~~~~~~~~~~~~~~~~~v~~d~-~-~~~~~~~~~~~~~~~l~~~dil~~n~~E 222 (341)
....+.++|++++.|-.+-.+ .-....++..++..|+++++-. + +|......+...+.+++.+|.+.+-++.
T Consensus 58 ~~~~l~~~D~vI~gGG~l~~d~~~~~~~~~~~~~~~~a~~~~k~~~~~g~giGP~~~~~~r~~~~~~l~~~~~i~vRD~~ 137 (298)
T TIGR03609 58 VLRALRRADVVIWGGGSLLQDVTSFRSLLYYLGLMRLARLFGKPVILWGQGIGPLRRRLSRWLVRRVLRGCRAISVRDAA 137 (298)
T ss_pred HHHHHHHCCEEEECCcccccCCcccccHHHHHHHHHHHHHcCCCEEEEecccCCcCCHHHHHHHHHHHccCCEEEEeCHH
Confidence 446788999998887543111 1122335566777787754432 2 1222222445577889999999986666
Q ss_pred HHHHHhhcC
Q 019402 223 ARTFAKVHG 231 (341)
Q Consensus 223 ~~~l~~~~~ 231 (341)
...+....+
T Consensus 138 S~~~l~~~g 146 (298)
T TIGR03609 138 SYRLLKRLG 146 (298)
T ss_pred HHHHHHHhC
Confidence 555554333
No 132
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=40.12 E-value=3e+02 Score=25.33 Aligned_cols=94 Identities=11% Similarity=0.173 Sum_probs=54.8
Q ss_pred CceEEEEeecCCchhHHHHHHHHh-cCCceeEee--cCCCCcceEEEEEeCCeeceeecccccccCCcccCCCchhHhhh
Q 019402 79 GATSYIGCIGKDKFGEEMKKNSTA-AGVNVKYYE--DESAPTGTCAVCVVGGERSLVANLSAANCYKSEHLKRPEIWSIV 155 (341)
Q Consensus 79 ~~v~li~~vG~D~~g~~i~~~l~~-~gi~~~~~~--~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (341)
.++.++|.-| .-|+.+.+.|++ ..+....+. .+....+..+.+ .++ .+..+.++. ..+
T Consensus 6 ~~VaIvGATG--~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~--~~~-----------~l~v~~~~~----~~~ 66 (347)
T PRK06728 6 YHVAVVGATG--AVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQF--KGR-----------EIIIQEAKI----NSF 66 (347)
T ss_pred CEEEEEeCCC--HHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeee--CCc-----------ceEEEeCCH----HHh
Confidence 5677777766 679999999994 667744321 222233333311 111 111222221 234
Q ss_pred hcceEEEEeccccccCHHHHHHHHHHHHhcCCeEEEeCCcHH
Q 019402 156 EKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPF 197 (341)
Q Consensus 156 ~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~ 197 (341)
.+.|+++++ .+.+...++...+.+.|. +++|.++.+
T Consensus 67 ~~~Divf~a-----~~~~~s~~~~~~~~~~G~-~VID~Ss~f 102 (347)
T PRK06728 67 EGVDIAFFS-----AGGEVSRQFVNQAVSSGA-IVIDNTSEY 102 (347)
T ss_pred cCCCEEEEC-----CChHHHHHHHHHHHHCCC-EEEECchhh
Confidence 678998885 355677888888877775 457777654
No 133
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=39.95 E-value=2.6e+02 Score=24.57 Aligned_cols=35 Identities=9% Similarity=0.235 Sum_probs=28.5
Q ss_pred CCCCcchhhHHHHHHHHhc------CCCHHHHHHHHHHHHh
Q 019402 290 DTNGAGDAFVGGFLSQLVQ------EKPVEDCVRTGCYAAN 324 (341)
Q Consensus 290 dttGAGDaf~a~~~~~l~~------g~~~~~a~~~A~~~aa 324 (341)
-.+|+|-+|.+-|+-++.. |.+.++|.+++.....
T Consensus 170 al~gsgPA~~~~~~~al~~a~~~~ggl~~~~a~~l~~~~~~ 210 (277)
T PRK06928 170 NLTSSSPGFIAAIFEEFAEAAVRNSSLSDEEAFQFLNFALA 210 (277)
T ss_pred eeecCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3589999999999988876 5899998888875543
No 134
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=39.41 E-value=69 Score=21.23 Aligned_cols=27 Identities=19% Similarity=0.046 Sum_probs=18.4
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 019402 296 DAFVGGFLSQLVQEKPVEDCVRTGCYAA 323 (341)
Q Consensus 296 Daf~a~~~~~l~~g~~~~~a~~~A~~~a 323 (341)
|+|.+++.+++. +.+.+..+..+...+
T Consensus 4 Daf~vg~~~g~~-~~~~~~~~~~~~~ig 30 (67)
T PF02659_consen 4 DAFAVGISYGLR-GISRRIILLIALIIG 30 (67)
T ss_pred HHHHHHHHHHHH-cCChHHHHHHHHHHH
Confidence 999999999998 444444444444443
No 135
>PF11469 Ribonucleas_3_2: Ribonuclease III; InterPro: IPR021568 This archaeal family of proteins has no known function. ; PDB: 1ZTD_A.
Probab=39.37 E-value=40 Score=24.74 Aligned_cols=32 Identities=22% Similarity=0.253 Sum_probs=26.5
Q ss_pred ccCCCCcchhhHHHHHHHHhcCC-CHHHHHHHH
Q 019402 288 LVDTNGAGDAFVGGFLSQLVQEK-PVEDCVRTG 319 (341)
Q Consensus 288 vvdttGAGDaf~a~~~~~l~~g~-~~~~a~~~A 319 (341)
-.|-.|-||..-|-+.|+|+.|. +.++|++.=
T Consensus 52 R~dkh~kGd~aEA~iAyAWLeg~it~eEaveil 84 (120)
T PF11469_consen 52 RTDKHGKGDIAEALIAYAWLEGKITIEEAVEIL 84 (120)
T ss_dssp CGGCCGHHHHHHHHHHHHHHTTSS-HHHHHHHH
T ss_pred cccccCccHHHHHHHHHHHHhccccHHHHHHHH
Confidence 35889999999999999999984 788888753
No 136
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=39.10 E-value=3e+02 Score=25.83 Aligned_cols=105 Identities=14% Similarity=0.118 Sum_probs=58.3
Q ss_pred cCCceeecCchhHHHHHHHHHHhCCCCceEEEEe-ecCCchhHHHHHHHHhcCCceeEeecCCCCcceEEEEEeCCeece
Q 019402 53 KENVEYIAGGATQNSIKVAQWMLQIPGATSYIGC-IGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVVGGERSL 131 (341)
Q Consensus 53 ~~~~~~~~GG~~~n~a~~l~~l~~lg~~v~li~~-vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~g~~~~ 131 (341)
.......+.|.++-.+..++ +++.|..+.+... .|. -=+.+...+++.||++.++..... +
T Consensus 78 ~~~~~afsSGmaAI~~~~l~-ll~~GD~vl~~~~~YG~--t~~~~~~~l~~~gi~~~~~d~~~~------------~--- 139 (396)
T COG0626 78 GEDAFAFSSGMAAISTALLA-LLKAGDHVLLPDDLYGG--TYRLFEKILQKFGVEVTFVDPGDD------------E--- 139 (396)
T ss_pred CCcEEEecCcHHHHHHHHHH-hcCCCCEEEecCCccch--HHHHHHHHHHhcCeEEEEECCCCh------------H---
Confidence 34566677787777666666 4555655554433 222 124456666778887766531110 0
Q ss_pred eecccccccCCcccCCCchhHhhh--hcceEEEEecccc-ccCHHHHHHHHHHHHhcCCeEEEeC
Q 019402 132 VANLSAANCYKSEHLKRPEIWSIV--EKAKYYYIAGFFL-TVSPESIQMVAEHAAAKNKVFMMNL 193 (341)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~i~~~~~-~~~~~~~~~~~~~~~~~~~~v~~d~ 193 (341)
..+..+ .+.++|++..-+. .+.-.-+..+.+.+++.|..+++|-
T Consensus 140 ------------------~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDN 186 (396)
T COG0626 140 ------------------ALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDN 186 (396)
T ss_pred ------------------HHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEEC
Confidence 001112 2577777765331 1122346777788888887777775
No 137
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=39.05 E-value=93 Score=21.20 Aligned_cols=40 Identities=10% Similarity=0.055 Sum_probs=28.0
Q ss_pred HHHHHHHHhCCCCceEEEEeecC------CchhHHHHHHHHhcCCceeE
Q 019402 67 SIKVAQWMLQIPGATSYIGCIGK------DKFGEEMKKNSTAAGVNVKY 109 (341)
Q Consensus 67 ~a~~l~~l~~lg~~v~li~~vG~------D~~g~~i~~~l~~~gi~~~~ 109 (341)
+|..+++ +|.+++++..-.. ....+.+.+.|++.||++.+
T Consensus 14 ~A~~l~~---~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~ 59 (80)
T PF00070_consen 14 LAEALAE---LGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHT 59 (80)
T ss_dssp HHHHHHH---TTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHH---hCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEe
Confidence 4555555 5699999876432 13467788899999998864
No 138
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=38.26 E-value=3.2e+02 Score=25.02 Aligned_cols=94 Identities=12% Similarity=0.072 Sum_probs=54.3
Q ss_pred CceEEEEeecCCchhHHHHHHHHhcCCceeEee--cCCCCcceEEEEEeCCeeceeecccccccCCccc-CCCchhHhhh
Q 019402 79 GATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYE--DESAPTGTCAVCVVGGERSLVANLSAANCYKSEH-LKRPEIWSIV 155 (341)
Q Consensus 79 ~~v~li~~vG~D~~g~~i~~~l~~~gi~~~~~~--~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 155 (341)
.++.++|.-| .-|+.+.+.|++......-+. .+.+..+..+..+.+.. +...+ .. ....+
T Consensus 2 ~~VavvGATG--~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~------------~~v~~~~~---~~~~~ 64 (334)
T COG0136 2 LNVAVLGATG--AVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKS------------IGVPEDAA---DEFVF 64 (334)
T ss_pred cEEEEEeccc--hHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCcc------------ccCccccc---ccccc
Confidence 5677888766 579999999998766665332 23333333322221111 11111 11 11235
Q ss_pred hcceEEEEeccccccCHHHHHHHHHHHHhcCCeEEEeCCc
Q 019402 156 EKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSA 195 (341)
Q Consensus 156 ~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~ 195 (341)
++.|+++++. +.+...++..++.+.|+.+ +|-++
T Consensus 65 ~~~Divf~~a-----g~~~s~~~~p~~~~~G~~V-IdnsS 98 (334)
T COG0136 65 SDVDIVFFAA-----GGSVSKEVEPKAAEAGCVV-IDNSS 98 (334)
T ss_pred ccCCEEEEeC-----chHHHHHHHHHHHHcCCEE-EeCCc
Confidence 5889999864 4456688889999999555 45544
No 139
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=37.71 E-value=1.9e+02 Score=24.49 Aligned_cols=73 Identities=21% Similarity=0.060 Sum_probs=48.7
Q ss_pred hHhhhhcceEEEEeccccccCHHHHHHHHHHHHh-cCCeEEEeCCcHHH---H----------hhhhHHHHhhCCCCcEE
Q 019402 151 IWSIVEKAKYYYIAGFFLTVSPESIQMVAEHAAA-KNKVFMMNLSAPFI---C----------EFFREPQEKALPYMDYV 216 (341)
Q Consensus 151 ~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~-~~~~v~~d~~~~~~---~----------~~~~~~~~~~l~~~dil 216 (341)
..+..+.+|+|++. +|.+.+..+++..+. .+-++++|+..+.. . ...-+.+.++++.+.++
T Consensus 54 ~~dA~~~aDVVvLA-----VP~~a~~~v~~~l~~~~~~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~akVV 128 (211)
T COG2085 54 NEDAAALADVVVLA-----VPFEAIPDVLAELRDALGGKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGAKVV 128 (211)
T ss_pred hHHHHhcCCEEEEe-----ccHHHHHhHHHHHHHHhCCeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCcchh
Confidence 34677889999995 566777777777765 44588888877621 0 01345677788888777
Q ss_pred E-cCHHHHHHHHh
Q 019402 217 F-GNETEARTFAK 228 (341)
Q Consensus 217 ~-~n~~E~~~l~~ 228 (341)
+ .|.-.+..|..
T Consensus 129 kAFn~i~a~~l~~ 141 (211)
T COG2085 129 KAFNTIPAAVLAD 141 (211)
T ss_pred hhhcccCHHHhcc
Confidence 7 66666665543
No 140
>PRK07050 cystathionine beta-lyase; Provisional
Probab=37.21 E-value=3.5e+02 Score=25.24 Aligned_cols=38 Identities=11% Similarity=0.182 Sum_probs=27.2
Q ss_pred cceEEEEeccc-cccCHHHHHHHHHHHHhcCCeEEEeCC
Q 019402 157 KAKYYYIAGFF-LTVSPESIQMVAEHAAAKNKVFMMNLS 194 (341)
Q Consensus 157 ~~~~v~i~~~~-~~~~~~~~~~~~~~~~~~~~~v~~d~~ 194 (341)
+.++|+++.-. +..+...+..+.+.++++|+.+++|-.
T Consensus 150 ~tklV~le~p~Np~~~~~di~~I~~ia~~~gi~livD~a 188 (394)
T PRK07050 150 NTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNT 188 (394)
T ss_pred CCeEEEEECCCCCCccHhhHHHHHHHHHHcCCEEEEECC
Confidence 45677765432 234566788888889999999888875
No 141
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=37.10 E-value=60 Score=27.90 Aligned_cols=50 Identities=10% Similarity=0.147 Sum_probs=28.2
Q ss_pred hcceEEEEeccccccCHHHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCCCCcEEE
Q 019402 156 EKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVF 217 (341)
Q Consensus 156 ~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~ 217 (341)
...|.+.++|...+...+.+..+++.. ..+|+++.|++.. .+-+++|.++
T Consensus 31 ~gtDai~VGGS~~~~~~d~vv~~ik~~--~~lPvilfPg~~~----------~vs~~aDail 80 (230)
T PF01884_consen 31 SGTDAIIVGGSDTGVTLDNVVALIKRV--TDLPVILFPGSPS----------QVSPGADAIL 80 (230)
T ss_dssp TT-SEEEEE-STHCHHHHHHHHHHHHH--SSS-EEEETSTCC----------G--TTSSEEE
T ss_pred cCCCEEEECCCCCccchHHHHHHHHhc--CCCCEEEeCCChh----------hcCcCCCEEE
Confidence 678999999965122233444444443 7788999998654 2345677655
No 142
>PRK05967 cystathionine beta-lyase; Provisional
Probab=36.95 E-value=3.6e+02 Score=25.30 Aligned_cols=38 Identities=21% Similarity=0.144 Sum_probs=28.7
Q ss_pred cceEEEEeccc-cccCHHHHHHHHHHHHhcCCeEEEeCC
Q 019402 157 KAKYYYIAGFF-LTVSPESIQMVAEHAAAKNKVFMMNLS 194 (341)
Q Consensus 157 ~~~~v~i~~~~-~~~~~~~~~~~~~~~~~~~~~v~~d~~ 194 (341)
+.++|+++.-+ +.....-+..+.+.++++|+.+++|-.
T Consensus 149 ~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t 187 (395)
T PRK05967 149 NTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNT 187 (395)
T ss_pred CceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECC
Confidence 46788887432 344557789999999999999988864
No 143
>KOG0174 consensus 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3 [Posttranslational modification, protein turnover, chaperones]
Probab=36.72 E-value=20 Score=29.54 Aligned_cols=41 Identities=32% Similarity=0.585 Sum_probs=35.6
Q ss_pred CCcchhhHHHHHHH-HhcCCCHHHHHHHHHHHHhhhhhhccc
Q 019402 292 NGAGDAFVGGFLSQ-LVQEKPVEDCVRTGCYAANVVIQRSGC 332 (341)
Q Consensus 292 tGAGDaf~a~~~~~-l~~g~~~~~a~~~A~~~aa~~v~~~g~ 332 (341)
-|.|-+|+=||+-. |-.|+++|||.+|-..+-++.+.+-|.
T Consensus 147 gGSGStfIYGf~D~~~r~nMt~EE~~~fvk~Av~lAi~rDGs 188 (224)
T KOG0174|consen 147 GGSGSTFIYGFCDANWRPNMTLEECVRFVKNAVSLAIERDGS 188 (224)
T ss_pred ccCCceeeeeeehhhcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence 58898988888875 567899999999999999999998876
No 144
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=35.95 E-value=2.5e+02 Score=24.60 Aligned_cols=62 Identities=13% Similarity=0.030 Sum_probs=46.0
Q ss_pred hhhcceEEEEeccccccCHHHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhC-CCCcEEEcCHHHHH
Q 019402 154 IVEKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKAL-PYMDYVFGNETEAR 224 (341)
Q Consensus 154 ~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l-~~~dil~~n~~E~~ 224 (341)
....+|++++.... .+++.+.++++.++..|..+.+|..... + ..... -.+|++-+|.....
T Consensus 130 ~~~GAD~VlLi~~~--l~~~~l~~li~~a~~lGl~~lvevh~~~------E-~~~A~~~gadiIgin~rdl~ 192 (260)
T PRK00278 130 RAAGADAILLIVAA--LDDEQLKELLDYAHSLGLDVLVEVHDEE------E-LERALKLGAPLIGINNRNLK 192 (260)
T ss_pred HHcCCCEEEEEecc--CCHHHHHHHHHHHHHcCCeEEEEeCCHH------H-HHHHHHcCCCEEEECCCCcc
Confidence 34578999998754 3668999999999999999999997654 2 22222 36899998865543
No 145
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=35.94 E-value=70 Score=27.35 Aligned_cols=52 Identities=15% Similarity=0.168 Sum_probs=37.4
Q ss_pred cceEEEEeccccccCHHHHHHHHHHHHhcCCe--EEEeCCcHHHHhhhhHHHHhhCCCCcEEEc
Q 019402 157 KAKYYYIAGFFLTVSPESIQMVAEHAAAKNKV--FMMNLSAPFICEFFREPQEKALPYMDYVFG 218 (341)
Q Consensus 157 ~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~--v~~d~~~~~~~~~~~~~~~~~l~~~dil~~ 218 (341)
.+|++.+-.. .. ....+.++.+|+.|++ +.++|..+. +.+..+++.+|.+.+
T Consensus 85 gad~I~~H~E---a~-~~~~~~l~~Ir~~g~k~GlalnP~T~~------~~i~~~l~~vD~Vlv 138 (223)
T PRK08745 85 GATTISFHPE---AS-RHVHRTIQLIKSHGCQAGLVLNPATPV------DILDWVLPELDLVLV 138 (223)
T ss_pred CCCEEEEccc---Cc-ccHHHHHHHHHHCCCceeEEeCCCCCH------HHHHHHHhhcCEEEE
Confidence 5687777432 12 2467888999999987 788887654 557788889987763
No 146
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=35.76 E-value=1.2e+02 Score=25.63 Aligned_cols=49 Identities=14% Similarity=0.165 Sum_probs=37.5
Q ss_pred ceEEEEeccccccCHHHHHHHHHHHHh-cCCeEEEeCCcHHHHhhhhHHHHhhCCCCcEEE
Q 019402 158 AKYYYIAGFFLTVSPESIQMVAEHAAA-KNKVFMMNLSAPFICEFFREPQEKALPYMDYVF 217 (341)
Q Consensus 158 ~~~v~i~~~~~~~~~~~~~~~~~~~~~-~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~ 217 (341)
+|.+.++|+ .++..+.+.++++.+|+ ..+|+++.|++.. .+-+++|.++
T Consensus 25 tDaI~VGGS-~gvt~~~~~~~v~~ik~~~~lPvilfp~~~~----------~i~~~aD~~~ 74 (205)
T TIGR01769 25 TDAIMVGGS-LGIVESNLDQTVKKIKKITNLPVILFPGNVN----------GLSRYADAVF 74 (205)
T ss_pred CCEEEEcCc-CCCCHHHHHHHHHHHHhhcCCCEEEECCCcc----------ccCcCCCEEE
Confidence 699999985 35678889999999998 5689998887644 3456677665
No 147
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=35.46 E-value=3.6e+02 Score=25.10 Aligned_cols=38 Identities=16% Similarity=0.206 Sum_probs=22.1
Q ss_pred cceEEEEeccc-cccCHHHHHHHHHHHHhcCCeEEEeCC
Q 019402 157 KAKYYYIAGFF-LTVSPESIQMVAEHAAAKNKVFMMNLS 194 (341)
Q Consensus 157 ~~~~v~i~~~~-~~~~~~~~~~~~~~~~~~~~~v~~d~~ 194 (341)
+.++|+++.-+ +.....-+.++.+.+++.++.++.|-.
T Consensus 146 ~tklV~ie~p~NptG~v~dl~~I~~la~~~gi~livD~t 184 (390)
T PRK08133 146 NTKLFFLETPSNPLTELADIAALAEIAHAAGALLVVDNC 184 (390)
T ss_pred CCeEEEEECCCCCCCCcCCHHHHHHHHHHcCCEEEEECC
Confidence 45666664322 111112356777777888888877764
No 148
>PRK06444 prephenate dehydrogenase; Provisional
Probab=35.23 E-value=1.6e+02 Score=24.58 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=18.7
Q ss_pred eEEEEeecCCchhHHHHHHHHhcCCce
Q 019402 81 TSYIGCIGKDKFGEEMKKNSTAAGVNV 107 (341)
Q Consensus 81 v~li~~vG~D~~g~~i~~~l~~~gi~~ 107 (341)
+.+||. .+..|+++.+.|++.|..+
T Consensus 3 ~~iiG~--~G~mG~~~~~~~~~~g~~v 27 (197)
T PRK06444 3 EIIIGK--NGRLGRVLCSILDDNGLGV 27 (197)
T ss_pred EEEEec--CCcHHHHHHHHHHhCCCEE
Confidence 344553 3578999999999999776
No 149
>PRK08005 epimerase; Validated
Probab=34.71 E-value=72 Score=26.98 Aligned_cols=52 Identities=12% Similarity=0.143 Sum_probs=36.5
Q ss_pred cceEEEEeccccccCHHHHHHHHHHHHhcCCe--EEEeCCcHHHHhhhhHHHHhhCCCCcEEEc
Q 019402 157 KAKYYYIAGFFLTVSPESIQMVAEHAAAKNKV--FMMNLSAPFICEFFREPQEKALPYMDYVFG 218 (341)
Q Consensus 157 ~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~--v~~d~~~~~~~~~~~~~~~~~l~~~dil~~ 218 (341)
.+|.+.+-.. .. ....+.++.+|+.|.+ +.++|..+. +.+..+++.+|.+.+
T Consensus 81 gad~It~H~E---a~-~~~~~~l~~Ik~~G~k~GlAlnP~Tp~------~~i~~~l~~vD~Vlv 134 (210)
T PRK08005 81 RPGWIFIHAE---SV-QNPSEILADIRAIGAKAGLALNPATPL------LPYRYLALQLDALMI 134 (210)
T ss_pred CCCEEEEccc---Cc-cCHHHHHHHHHHcCCcEEEEECCCCCH------HHHHHHHHhcCEEEE
Confidence 4577777432 11 2457788999999988 788887654 457778888887773
No 150
>PLN02409 serine--glyoxylate aminotransaminase
Probab=34.15 E-value=3.7e+02 Score=25.00 Aligned_cols=48 Identities=15% Similarity=0.061 Sum_probs=24.2
Q ss_pred cCchhHHHHHHHHHHhCCCCceEEEEeecCCchhHHHHHHHHhcCCceeEee
Q 019402 60 AGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYE 111 (341)
Q Consensus 60 ~GG~~~n~a~~l~~l~~lg~~v~li~~vG~D~~g~~i~~~l~~~gi~~~~~~ 111 (341)
.+|.+.+.+.... +++.|.++ ++...| .++....+.++..|+++..+.
T Consensus 67 ~~gt~a~~~a~~~-~~~~Gd~V-lv~~~~--~~~~~~~~~~~~~g~~v~~v~ 114 (401)
T PLN02409 67 TTGTGAWESALTN-TLSPGDKV-VSFRIG--QFSLLWIDQMQRLNFDVDVVE 114 (401)
T ss_pred CCcHHHHHHHHHh-cCCCCCEE-EEeCCC--chhHHHHHHHHHcCCceEEEE
Confidence 3444444333322 34445444 344333 455555566677777766554
No 151
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=33.90 E-value=77 Score=26.59 Aligned_cols=51 Identities=20% Similarity=0.183 Sum_probs=34.5
Q ss_pred cceEEEEeccccccCHHHHHHHHHHHHhcCCe--EEEeCCcHHHHhhhhHHHHhhCCCCcEEE
Q 019402 157 KAKYYYIAGFFLTVSPESIQMVAEHAAAKNKV--FMMNLSAPFICEFFREPQEKALPYMDYVF 217 (341)
Q Consensus 157 ~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~--v~~d~~~~~~~~~~~~~~~~~l~~~dil~ 217 (341)
.++.+.+-.. ..+...++++.+|+.|++ +.++|..+. +.+.++++.+|.+.
T Consensus 80 g~~~i~~H~E----~~~~~~~~i~~ik~~g~k~GialnP~T~~------~~~~~~l~~vD~Vl 132 (201)
T PF00834_consen 80 GADYITFHAE----ATEDPKETIKYIKEAGIKAGIALNPETPV------EELEPYLDQVDMVL 132 (201)
T ss_dssp T-SEEEEEGG----GTTTHHHHHHHHHHTTSEEEEEE-TTS-G------GGGTTTGCCSSEEE
T ss_pred CCCEEEEccc----chhCHHHHHHHHHHhCCCEEEEEECCCCc------hHHHHHhhhcCEEE
Confidence 3577776432 223566788999999988 677886654 45778899999877
No 152
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=33.60 E-value=78 Score=26.96 Aligned_cols=52 Identities=12% Similarity=0.096 Sum_probs=37.3
Q ss_pred cceEEEEeccccccCHHHHHHHHHHHHhcCCe--EEEeCCcHHHHhhhhHHHHhhCCCCcEEEc
Q 019402 157 KAKYYYIAGFFLTVSPESIQMVAEHAAAKNKV--FMMNLSAPFICEFFREPQEKALPYMDYVFG 218 (341)
Q Consensus 157 ~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~--v~~d~~~~~~~~~~~~~~~~~l~~~dil~~ 218 (341)
.+|++.+-.. . .....+.++.+|+.|++ +.++|..+. +.+..+++.+|.+.+
T Consensus 81 gad~i~~H~E---a-~~~~~~~l~~ik~~g~k~GlalnP~Tp~------~~i~~~l~~~D~vlv 134 (220)
T PRK08883 81 GASMITFHVE---A-SEHVDRTLQLIKEHGCQAGVVLNPATPL------HHLEYIMDKVDLILL 134 (220)
T ss_pred CCCEEEEccc---C-cccHHHHHHHHHHcCCcEEEEeCCCCCH------HHHHHHHHhCCeEEE
Confidence 5677777432 1 23467888999999987 677887655 557788888887773
No 153
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=33.31 E-value=2.4e+02 Score=25.85 Aligned_cols=145 Identities=17% Similarity=0.103 Sum_probs=69.5
Q ss_pred CCceeecCchhHHHHHHHHHHhCCCCc-eEEEEeecCCchhHHHHHHHHhcCCceeEeecCCCCcceEEEEEeCCeecee
Q 019402 54 ENVEYIAGGATQNSIKVAQWMLQIPGA-TSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVVGGERSLV 132 (341)
Q Consensus 54 ~~~~~~~GG~~~n~a~~l~~l~~lg~~-v~li~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~g~~~~~ 132 (341)
.-...-+||.|.|+...+.. - |.+ +.++. +..| .+.|+...++..... ... .+ .|..
T Consensus 13 ~I~VIGvGg~G~n~v~~m~~-~--~~~gve~ia-~nTD------~q~L~~~~a~~ki~i-G~~-~t-------~GlG--- 70 (338)
T COG0206 13 RIKVIGVGGAGGNAVNRMIE-E--GVEGVEFIA-INTD------AQALKSSKADRKILI-GES-IT-------RGLG--- 70 (338)
T ss_pred eEEEEEeCCcchHHHHHHHH-h--hhCceEEEE-eccC------HHHHhccccCeEEEe-ccc-ee-------eccC---
Confidence 33456789999998877765 2 344 55555 4666 445554444332221 110 00 0111
Q ss_pred ecccccccCCccc--CCCchhHhhhhcceEEEEe-ccccccCHHHHHHHHHHHHhcCCeEEEeCCcHHH------Hhhhh
Q 019402 133 ANLSAANCYKSEH--LKRPEIWSIVEKAKYYYIA-GFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFI------CEFFR 203 (341)
Q Consensus 133 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~i~-~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~------~~~~~ 203 (341)
-++++..-..- -+..+..+.++.+|.+++. |..-.-......-+.+.+++.|..++--...|.. .....
T Consensus 71 --aGa~P~vG~~aAee~~~~I~~~l~g~dmvfitaG~GGGTGtGaaPVvakiake~g~ltvavvt~Pf~~EG~~r~~~A~ 148 (338)
T COG0206 71 --AGANPEVGRAAAEESIEEIEEALKGADMVFVTAGMGGGTGTGAAPVVAEIAKELGALTVAVVTLPFSFEGSPRMENAE 148 (338)
T ss_pred --CCCCcHHHHHHHHHHHHHHHHHhccCCeEEEEeeecCCccccccHHHHHHHHhcCCcEEEEEEecchhcCchHHHHHH
Confidence 01111111110 0112345678899955544 4322223345566677777888763222211211 11133
Q ss_pred HHHHhhCCCCcEEE--cCHHH
Q 019402 204 EPQEKALPYMDYVF--GNETE 222 (341)
Q Consensus 204 ~~~~~~l~~~dil~--~n~~E 222 (341)
+.++++-+++|-++ +|+.=
T Consensus 149 ~gi~~L~~~~DtlIvi~Ndkl 169 (338)
T COG0206 149 EGIEELREVVDTLIVIPNDKL 169 (338)
T ss_pred HHHHHHHHhCCcEEEEecHHH
Confidence 45677777776554 66553
No 154
>COG0219 CspR Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]
Probab=33.27 E-value=78 Score=25.24 Aligned_cols=101 Identities=15% Similarity=0.083 Sum_probs=53.4
Q ss_pred chhHHHHHHHHHHhCCCCceEEEEeecCCchhHHHHHHHHhcCCceeE-eecCCCCcceEEEEEeC-Ceeceeecccccc
Q 019402 62 GATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKY-YEDESAPTGTCAVCVVG-GERSLVANLSAAN 139 (341)
Q Consensus 62 G~~~n~a~~l~~l~~lg~~v~li~~vG~D~~g~~i~~~l~~~gi~~~~-~~~~~~~t~~~~~~~~~-g~~~~~~~~~~~~ 139 (341)
++..|+++.++. . |.+..+|-++|=+-. -+.|++.|.|... +......+-..++.... |.|.+.....+..
T Consensus 14 ~NTGNI~R~ca~-t--ga~LhlI~PlGF~l~----dk~lkRAGlDY~~~~~l~~h~s~e~fl~~~~~~~rl~~~tt~~~~ 86 (155)
T COG0219 14 PNTGNIIRTCAA-T--GAELHLIEPLGFDLD----DKRLKRAGLDYHEKASLTEHDSLEAFLEAEPIGGRLFALTTKGTT 86 (155)
T ss_pred CchhHHHHHHHh-c--CCeEEEEccCCCccc----hhhhhhcccchHhhcceEEeCCHHHHHhhccCCceEEEEEecccc
Confidence 345688888886 4 499999999996644 3346667777653 22222222222222211 3333322222222
Q ss_pred cCCcccCCCchhHhhhhcceEEEEeccccccCHHHHHHH
Q 019402 140 CYKSEHLKRPEIWSIVEKAKYYYIAGFFLTVSPESIQMV 178 (341)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~ 178 (341)
..+.. .++..|++.++..+-.++.+.+...
T Consensus 87 ~~~~~---------~f~~~d~llFG~Es~GLP~~i~~~~ 116 (155)
T COG0219 87 TYTDV---------SFQKGDYLLFGPESRGLPEEILDAA 116 (155)
T ss_pred ccccc---------cCCCCCEEEECCCCCCCCHHHHHhC
Confidence 22221 2445778888876655555444443
No 155
>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=33.07 E-value=1e+02 Score=31.12 Aligned_cols=43 Identities=14% Similarity=0.138 Sum_probs=26.4
Q ss_pred hhhhcceEEEEeccccc-cCHHHHHHHHHHHHhc-CCe-EEEeCCcH
Q 019402 153 SIVEKAKYYYIAGFFLT-VSPESIQMVAEHAAAK-NKV-FMMNLSAP 196 (341)
Q Consensus 153 ~~~~~~~~v~i~~~~~~-~~~~~~~~~~~~~~~~-~~~-v~~d~~~~ 196 (341)
..++++|++++-|.+.. ..+-....+ ..++++ |.+ +++|++..
T Consensus 165 ~Di~nAd~Ili~GsNpae~hPv~~~~i-~~Ak~~~GaklIvVDPR~t 210 (649)
T cd02752 165 NDIKNADVILVMGGNPAEAHPVSFKWI-LEAKEKNGAKLIVVDPRFT 210 (649)
T ss_pred HHHhcCCEEEEECCChHHhCcHHHHHH-HHHHHcCCCeEEEEcCCCC
Confidence 34678999999886542 223334444 445554 755 88999753
No 156
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=32.34 E-value=2.2e+02 Score=21.49 Aligned_cols=114 Identities=10% Similarity=0.075 Sum_probs=58.5
Q ss_pred eecC-CchhHHHHHHHHh-cCCceeEeecCCCCcceEEEEEeCCeeceeecccccccCCcccCCCchhHhhhhcceEEEE
Q 019402 86 CIGK-DKFGEEMKKNSTA-AGVNVKYYEDESAPTGTCAVCVVGGERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYI 163 (341)
Q Consensus 86 ~vG~-D~~g~~i~~~l~~-~gi~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i 163 (341)
.+|. ...|+.+.+.+.+ .++.+........+. . .|+..- ...+.. ........ +..+.+..+|+++-
T Consensus 5 i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~-~------~g~d~g-~~~~~~-~~~~~v~~--~l~~~~~~~DVvID 73 (124)
T PF01113_consen 5 IVGASGRMGRAIAEAILESPGFELVGAVDRKPSA-K------VGKDVG-ELAGIG-PLGVPVTD--DLEELLEEADVVID 73 (124)
T ss_dssp EETTTSHHHHHHHHHHHHSTTEEEEEEEETTTST-T------TTSBCH-HHCTSS-T-SSBEBS---HHHHTTH-SEEEE
T ss_pred EECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcc-c------ccchhh-hhhCcC-Ccccccch--hHHHhcccCCEEEE
Confidence 3444 4689998888887 667766653221100 0 011110 000100 00010011 23355667886654
Q ss_pred eccccccCHHHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCCCCcEEE
Q 019402 164 AGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVF 217 (341)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~ 217 (341)
- -.|+.....++.+.++++++++-..+. .+...+.++++.+.+.++.
T Consensus 74 f-----T~p~~~~~~~~~~~~~g~~~ViGTTG~--~~~~~~~l~~~a~~~~vl~ 120 (124)
T PF01113_consen 74 F-----TNPDAVYDNLEYALKHGVPLVIGTTGF--SDEQIDELEELAKKIPVLI 120 (124)
T ss_dssp E-----S-HHHHHHHHHHHHHHT-EEEEE-SSS--HHHHHHHHHHHTTTSEEEE
T ss_pred c-----CChHHhHHHHHHHHhCCCCEEEECCCC--CHHHHHHHHHHhccCCEEE
Confidence 2 157888999999999999988866553 2223345677777777766
No 157
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=32.29 E-value=3.5e+02 Score=23.82 Aligned_cols=186 Identities=19% Similarity=0.227 Sum_probs=96.9
Q ss_pred EEeecCCchhHHHHHHHHhcC-CceeEeecCCCCcceEEEEEeCCeec-eeecccccccCCcccCCCchhHhhhhcceEE
Q 019402 84 IGCIGKDKFGEEMKKNSTAAG-VNVKYYEDESAPTGTCAVCVVGGERS-LVANLSAANCYKSEHLKRPEIWSIVEKAKYY 161 (341)
Q Consensus 84 i~~vG~D~~g~~i~~~l~~~g-i~~~~~~~~~~~t~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 161 (341)
|+.+|....|+.+..-|.+.| ++-..+...+.. ...+. +....+. .. .....+...++|++
T Consensus 4 IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~---------~e~~~~l~~~~g~------~~--~~~~~~~~~~advv 66 (266)
T COG0345 4 IGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRS---------EEKRAALAAEYGV------VT--TTDNQEAVEEADVV 66 (266)
T ss_pred EEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCC---------HHHHHHHHHHcCC------cc--cCcHHHHHhhCCEE
Confidence 677787788999999988888 454443322211 11111 1111111 10 11133567789999
Q ss_pred EEeccccccCHHHHHHHHHHHHh--cCC-eEEEeCCcHHHHhhhhHHHHhhCCCCcEEE--cCHHHHH--HHHhhcCCC-
Q 019402 162 YIAGFFLTVSPESIQMVAEHAAA--KNK-VFMMNLSAPFICEFFREPQEKALPYMDYVF--GNETEAR--TFAKVHGWE- 233 (341)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~--~~~-~v~~d~~~~~~~~~~~~~~~~~l~~~dil~--~n~~E~~--~l~~~~~~~- 233 (341)
+++ +-|..+..++..++. .+. .+.+-.+.+ .+.++++++...++- ||.-=.- ..+......
T Consensus 67 ~La-----vKPq~~~~vl~~l~~~~~~~lvISiaAGv~------~~~l~~~l~~~~vvR~MPNt~a~vg~g~t~i~~~~~ 135 (266)
T COG0345 67 FLA-----VKPQDLEEVLSKLKPLTKDKLVISIAAGVS------IETLERLLGGLRVVRVMPNTPALVGAGVTAISANAN 135 (266)
T ss_pred EEE-----eChHhHHHHHHHhhcccCCCEEEEEeCCCC------HHHHHHHcCCCceEEeCCChHHHHcCcceeeecCcc
Confidence 995 567788888888874 232 233333322 244667776555555 6654211 111111100
Q ss_pred -CCCHHHHHHHHhcCCCCCCCCccEEEEeeCCCCEEEEeCCeEEEEecccCCCCcccCCCCcchhhHHHHHHHHh-----
Q 019402 234 -TDNVEEIALKISQWPKASGTHKRITVITQGADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFLSQLV----- 307 (341)
Q Consensus 234 -~~~~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~v~~~~~~~~~vvdttGAGDaf~a~~~~~l~----- 307 (341)
.+...+.+..|. + +. |-.+.-.++... -+...+|+|-+|.+-|+-++.
T Consensus 136 ~~~~~~~~v~~l~----------~----~~---G~v~~v~E~~~d---------a~TaisGSgPAyv~~~iEal~~agv~ 189 (266)
T COG0345 136 VSEEDKAFVEALL----------S----AV---GKVVEVEESLMD---------AVTALSGSGPAYVFLFIEALADAGVR 189 (266)
T ss_pred CCHHHHHHHHHHH----------H----hc---CCeEEechHHhh---------HHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 011122333331 1 11 212211121111 234668999999998887664
Q ss_pred cCCCHHHHHHHHHHHH
Q 019402 308 QEKPVEDCVRTGCYAA 323 (341)
Q Consensus 308 ~g~~~~~a~~~A~~~a 323 (341)
.|.+.++|.+++...-
T Consensus 190 ~Gl~~~~A~~l~~~t~ 205 (266)
T COG0345 190 LGLPREEARELAAQTV 205 (266)
T ss_pred cCCCHHHHHHHHHHHH
Confidence 5889999988887653
No 158
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=31.53 E-value=1e+02 Score=26.82 Aligned_cols=30 Identities=20% Similarity=0.200 Sum_probs=20.1
Q ss_pred CCCHHHHHHHHhcCCCCCCCCccEEEEeeCCCCEEEE
Q 019402 234 TDNVEEIALKISQWPKASGTHKRITVITQGADPVVVA 270 (341)
Q Consensus 234 ~~~~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~ 270 (341)
..+.+++++.+. .. .+.|+.|.|.+...-|
T Consensus 114 V~d~~ea~~~~~------~~-~~rVflt~G~~~l~~f 143 (257)
T COG2099 114 VADIEEAAEAAK------QL-GRRVFLTTGRQNLAHF 143 (257)
T ss_pred ecCHHHHHHHHh------cc-CCcEEEecCccchHHH
Confidence 455666666662 22 2679999999887655
No 159
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=31.10 E-value=1.5e+02 Score=26.11 Aligned_cols=68 Identities=10% Similarity=0.212 Sum_probs=36.1
Q ss_pred hhhhcceEEEEeccccccCHHHHHHHHHHHHh-----cCCeEEEeCCcHHHHhhhhHHHHhhCCC----CcEEEcCHHHH
Q 019402 153 SIVEKAKYYYIAGFFLTVSPESIQMVAEHAAA-----KNKVFMMNLSAPFICEFFREPQEKALPY----MDYVFGNETEA 223 (341)
Q Consensus 153 ~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~d~~~~~~~~~~~~~~~~~l~~----~dil~~n~~E~ 223 (341)
..+++..++|++ ++|++.+..+++.+.. ..+-+++|.++........+.+.++-.+ .+++++..++.
T Consensus 19 ~~lEDlGyycvD----NLPp~Llp~~~~~~~~~~~~~~kvAv~iDiRs~~~~~~l~~~l~~l~~~~~~~~~iLFLeA~~~ 94 (286)
T COG1660 19 RVLEDLGYYCVD----NLPPQLLPKLADLMLTLESRITKVAVVIDVRSREFFGDLEEVLDELKDNGDIDPRVLFLEADDE 94 (286)
T ss_pred HHHHhcCeeeec----CCCHHHHHHHHHHHhhcccCCceEEEEEecccchhHHHHHHHHHHHHhcCCCCceEEEEECchh
Confidence 456667777776 5677766666664422 1223677777654333333333333322 56777554443
Q ss_pred H
Q 019402 224 R 224 (341)
Q Consensus 224 ~ 224 (341)
.
T Consensus 95 ~ 95 (286)
T COG1660 95 T 95 (286)
T ss_pred H
Confidence 3
No 160
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=30.84 E-value=3.4e+02 Score=23.11 Aligned_cols=61 Identities=15% Similarity=0.088 Sum_probs=41.2
Q ss_pred hcceEEEEeccccccCHHHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCCCCcEEE--cCHH
Q 019402 156 EKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVF--GNET 221 (341)
Q Consensus 156 ~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~--~n~~ 221 (341)
..+||+.+.+ .-+.+++...++.+++.|..+.+|+-+.........++++ -.+|++. .+.+
T Consensus 79 aGAd~~tV~g---~A~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~~~~~l~~--~gvd~~~~H~g~D 141 (217)
T COG0269 79 AGADWVTVLG---AADDATIKKAIKVAKEYGKEVQIDLIGVWDPEQRAKWLKE--LGVDQVILHRGRD 141 (217)
T ss_pred cCCCEEEEEe---cCCHHHHHHHHHHHHHcCCeEEEEeecCCCHHHHHHHHHH--hCCCEEEEEeccc
Confidence 5789999987 4567899999999999999999998544322222223333 2455555 4444
No 161
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=30.75 E-value=1e+02 Score=26.43 Aligned_cols=51 Identities=14% Similarity=0.173 Sum_probs=36.6
Q ss_pred cceEEEEeccccccCHHHHHHHHHHHHhcCC--e--EEEeCCcHHHHhhhhHHHHhhCCCCcEEE
Q 019402 157 KAKYYYIAGFFLTVSPESIQMVAEHAAAKNK--V--FMMNLSAPFICEFFREPQEKALPYMDYVF 217 (341)
Q Consensus 157 ~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~--~--v~~d~~~~~~~~~~~~~~~~~l~~~dil~ 217 (341)
.+|++.+-. +.. ....+.++.+|+.|. + +.++|..+. +.+..+++.+|.+.
T Consensus 91 Gad~It~H~---Ea~-~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~------~~i~~~l~~vD~VL 145 (228)
T PRK08091 91 GADIVTLQV---EQT-HDLALTIEWLAKQKTTVLIGLCLCPETPI------SLLEPYLDQIDLIQ 145 (228)
T ss_pred CCCEEEEcc---cCc-ccHHHHHHHHHHCCCCceEEEEECCCCCH------HHHHHHHhhcCEEE
Confidence 568777743 222 235788899999997 6 788887655 55778888888776
No 162
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=30.64 E-value=4.1e+02 Score=24.32 Aligned_cols=94 Identities=15% Similarity=0.173 Sum_probs=51.7
Q ss_pred CceEEEEeecCCchhHHHHHHHHhcCCceeEee--cCCCCcceEEEEEeCCeeceeecccccccCCcccCCCchhHhhhh
Q 019402 79 GATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYE--DESAPTGTCAVCVVGGERSLVANLSAANCYKSEHLKRPEIWSIVE 156 (341)
Q Consensus 79 ~~v~li~~vG~D~~g~~i~~~l~~~gi~~~~~~--~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (341)
.++.++|.-| .-|..+.+.|.+.+.....+. ...... |++.. ..+ ..+..+.++. ..++
T Consensus 5 ~~IaIvGATG--~vG~eLlrlL~~~~hP~~~l~~v~s~~~a---------G~~l~--~~~--~~l~~~~~~~----~~~~ 65 (336)
T PRK05671 5 LDIAVVGATG--TVGEALVQILEERDFPVGTLHLLASSESA---------GHSVP--FAG--KNLRVREVDS----FDFS 65 (336)
T ss_pred CEEEEEccCC--HHHHHHHHHHhhCCCCceEEEEEECcccC---------CCeec--cCC--cceEEeeCCh----HHhc
Confidence 3566666655 579999999986554443321 111112 22111 111 1122222222 2246
Q ss_pred cceEEEEeccccccCHHHHHHHHHHHHhcCCeEEEeCCcHH
Q 019402 157 KAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPF 197 (341)
Q Consensus 157 ~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~ 197 (341)
+.|++++. .+.+....+...+.+.|++ ++|.++.+
T Consensus 66 ~vD~vFla-----~p~~~s~~~v~~~~~~G~~-VIDlS~~f 100 (336)
T PRK05671 66 QVQLAFFA-----AGAAVSRSFAEKARAAGCS-VIDLSGAL 100 (336)
T ss_pred CCCEEEEc-----CCHHHHHHHHHHHHHCCCe-EEECchhh
Confidence 78999885 3456777788888888875 57777544
No 163
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=30.20 E-value=1.2e+02 Score=26.14 Aligned_cols=60 Identities=8% Similarity=-0.065 Sum_probs=40.3
Q ss_pred eEEEEeccccccCHHHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCCCCcEEEcCH
Q 019402 159 KYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNE 220 (341)
Q Consensus 159 ~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~~n~ 220 (341)
+.|.++|-.+-+.++.+.++++.+++.|..+.++..+.... ..+.+.++++.+|.+.++.
T Consensus 72 ~~V~~sGGEPll~~~~~~~l~~~~k~~g~~i~l~TNG~~~~--~~~~~~~ll~~~d~v~isl 131 (246)
T PRK11145 72 GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRR--YDPVIDELLDVTDLVMLDL 131 (246)
T ss_pred CeEEEeCccHhcCHHHHHHHHHHHHHcCCCEEEECCCCCCc--chHHHHHHHHhCCEEEECC
Confidence 46777775555677888899999999999888876554310 1234555666678665544
No 164
>COG4588 AcfC Accessory colonization factor AcfC, contains ABC-type periplasmic domain [General function prediction only]
Probab=29.61 E-value=3.5e+02 Score=22.91 Aligned_cols=66 Identities=17% Similarity=0.096 Sum_probs=42.6
Q ss_pred hhcceEEEEeccccccCHHHHHHHHHH-HHhcCCeEEEeCCcHHHHhhhhHHHHhhCCCCcEEE-cCHHHHHHHHhh
Q 019402 155 VEKAKYYYIAGFFLTVSPESIQMVAEH-AAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVF-GNETEARTFAKV 229 (341)
Q Consensus 155 ~~~~~~v~i~~~~~~~~~~~~~~~~~~-~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~-~n~~E~~~l~~~ 229 (341)
...+|+..-.+ ..|...+..+... .++.|.+|-+..++.. .+.++.-+++|+|+ .|++-+..+...
T Consensus 18 ~~~adinlYGp---GGPhtaL~~vA~~~~ektg~kVnvt~GPq~------tW~~kAkknADilfgaseqsalaia~~ 85 (252)
T COG4588 18 AANADINLYGP---GGPHTALKDVAKKYEEKTGIKVNVTAGPQA------TWNEKAKKNADILFGASEQSALAIAED 85 (252)
T ss_pred hhcceEEEecC---CCCcHHHHHHHHHHHHHhCeEEEEecCCcc------hhhhhhhccCceeecccHHHHHHHHHh
Confidence 34566665543 4444556665544 4567888888886533 34667888999999 777766666543
No 165
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=29.06 E-value=2.2e+02 Score=23.45 Aligned_cols=52 Identities=17% Similarity=0.141 Sum_probs=34.5
Q ss_pred HHHHHHHhCCCCceEEEEe---ecCCchh--------HHHHHHHHhcCCceeEe-ecCCCCcce
Q 019402 68 IKVAQWMLQIPGATSYIGC---IGKDKFG--------EEMKKNSTAAGVNVKYY-EDESAPTGT 119 (341)
Q Consensus 68 a~~l~~l~~lg~~v~li~~---vG~D~~g--------~~i~~~l~~~gi~~~~~-~~~~~~t~~ 119 (341)
.-++++|-..|....++|. +|..++. ..+.+.|++.|+.++.+ ..++.+...
T Consensus 37 i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~~~gv~id~i~~Cph~p~~~ 100 (181)
T COG0241 37 IPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILASQGVKIDGILYCPHHPEDN 100 (181)
T ss_pred HHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHHHHcCCccceEEECCCCCCCC
Confidence 3344444456799999998 8876553 34677788999888776 345554443
No 166
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=28.96 E-value=1.7e+02 Score=25.55 Aligned_cols=81 Identities=14% Similarity=0.130 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCCCCcEEEcCHHHHHH--HHh---hcC----------CCCCC
Q 019402 172 PESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEART--FAK---VHG----------WETDN 236 (341)
Q Consensus 172 ~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~--l~~---~~~----------~~~~~ 236 (341)
.+.+..+.+.+++.|++++-++-... .+..+.+++|++++--.+.+. |.. ..+ .+.++
T Consensus 65 ~~gl~~L~~~~~~~Gl~~~Tev~d~~-------~v~~~~e~vdilqIgs~~~~n~~LL~~va~tgkPVilk~G~~~t~~e 137 (250)
T PRK13397 65 LQGIRYLHEVCQEFGLLSVSEIMSER-------QLEEAYDYLDVIQVGARNMQNFEFLKTLSHIDKPILFKRGLMATIEE 137 (250)
T ss_pred HHHHHHHHHHHHHcCCCEEEeeCCHH-------HHHHHHhcCCEEEECcccccCHHHHHHHHccCCeEEEeCCCCCCHHH
Confidence 46788888999999999988887654 244455578888854333321 111 111 12355
Q ss_pred HHHHHHHHhcCCCCCCCCccEEEEee-CCC
Q 019402 237 VEEIALKISQWPKASGTHKRITVITQ-GAD 265 (341)
Q Consensus 237 ~~~~~~~l~~~~~~~~~~~~~vvvt~-G~~ 265 (341)
+..+++++ ...|.+.+++.. |-.
T Consensus 138 ~~~A~e~i------~~~Gn~~i~L~eRg~~ 161 (250)
T PRK13397 138 YLGALSYL------QDTGKSNIILCERGVR 161 (250)
T ss_pred HHHHHHHH------HHcCCCeEEEEccccC
Confidence 66677777 455666566554 553
No 167
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=28.91 E-value=1.2e+02 Score=26.21 Aligned_cols=60 Identities=20% Similarity=0.205 Sum_probs=45.3
Q ss_pred ccchHHHHhccCCceeecCchhHHHHHHHHHHhCCCCceEEEEeecCCchhHHHHHHHHhcC
Q 019402 43 HLPMYDELASKENVEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAG 104 (341)
Q Consensus 43 ~~p~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~~lg~~v~li~~vG~D~~g~~i~~~l~~~g 104 (341)
+.+...+.........+.|| |.+..-.+.+++.+|..-..+|...-. .-+++.+.+++.|
T Consensus 63 n~~~i~~i~~~~~~~vQvGG-GIRs~~~v~~ll~~G~~rViiGt~av~-~p~~v~~~~~~~g 122 (241)
T COG0106 63 NLEAIKEILEATDVPVQVGG-GIRSLEDVEALLDAGVARVIIGTAAVK-NPDLVKELCEEYG 122 (241)
T ss_pred cHHHHHHHHHhCCCCEEeeC-CcCCHHHHHHHHHCCCCEEEEecceec-CHHHHHHHHHHcC
Confidence 34556666667788899999 555555556678888998999888853 4578999999988
No 168
>cd07044 CofD_YvcK Family of CofD-like proteins and proteins related to YvcK. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis. YvcK from Bacillus subtilis is a member of a family of mostly uncharacterized proteins and has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and pentose phosphate pathway. Both families appear to have a conserved phosphate binding site, but ha
Probab=28.72 E-value=2.2e+02 Score=25.78 Aligned_cols=76 Identities=13% Similarity=0.099 Sum_probs=42.1
Q ss_pred hhHHHHHHHHhcCCceeEeecCCCCcceEEEEEeCCe-----eceeecccccc--cCCccc-CCC-chhHhhhhcceEEE
Q 019402 92 FGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVVGGE-----RSLVANLSAAN--CYKSEH-LKR-PEIWSIVEKAKYYY 162 (341)
Q Consensus 92 ~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~g~-----~~~~~~~~~~~--~~~~~~-~~~-~~~~~~~~~~~~v~ 162 (341)
+.+.+....+-.|++-.-+..++.+...+ ...++|. ..+......-. .+.+.. ... ++..+.+.++|+++
T Consensus 101 ~~~ai~~~~~~l~v~g~VlP~t~~~v~l~-a~~~dG~~v~gq~~i~~~~~~I~~v~l~~~~~~~~~~~~l~AI~~ADlIv 179 (309)
T cd07044 101 FTDAIVELSKVFNIKGNILPSSDDPVSLH-AEXEDGTIVHGESFIPKGEKKIDRVFLTPVDEASPSREVLEAIEKADNIV 179 (309)
T ss_pred HHHHHHHHHHHhCCCCEEEcCcCCceEEE-EEECCCceEeeeeeeecCCCCceEEEEcCCCCCCCCHHHHHHHHhCCEEE
Confidence 46677777777888876655555544444 3334443 22221111111 222221 222 45668999999999
Q ss_pred Eecccc
Q 019402 163 IAGFFL 168 (341)
Q Consensus 163 i~~~~~ 168 (341)
+.+.++
T Consensus 180 lgPGSl 185 (309)
T cd07044 180 IGPGSL 185 (309)
T ss_pred ECCCcC
Confidence 998764
No 169
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=28.61 E-value=1.9e+02 Score=24.66 Aligned_cols=50 Identities=16% Similarity=0.075 Sum_probs=31.9
Q ss_pred hcceEEEEeccccccCHHHHHHHHHHHHhc--CCeEEEeCCcHHHHhhhhHHHHhhCCCCcEEE
Q 019402 156 EKAKYYYIAGFFLTVSPESIQMVAEHAAAK--NKVFMMNLSAPFICEFFREPQEKALPYMDYVF 217 (341)
Q Consensus 156 ~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~--~~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~ 217 (341)
...|.+.++|.. .+. +.....++.+++. ..++++.|+++. ..-+++|.++
T Consensus 24 ~gtdai~vGGS~-~v~-~~~~~~~~~ik~~~~~~Pvilfp~~~~----------~i~~~aDa~l 75 (219)
T cd02812 24 SGTDAIMVGGSD-GVS-STLDNVVRLIKRIRRPVPVILFPSNPE----------AVSPGADAYL 75 (219)
T ss_pred cCCCEEEECCcc-chh-hhHHHHHHHHHHhcCCCCEEEeCCCcc----------ccCcCCCEEE
Confidence 457999999864 333 4445444444443 488999998654 3456777665
No 170
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=28.21 E-value=2.5e+02 Score=27.17 Aligned_cols=55 Identities=20% Similarity=0.249 Sum_probs=38.4
Q ss_pred hCCCCceEEEEeecCCchhHHHHHHHHhcCCceeEeecCCCCcceEEEEEeCCeeceeeccc
Q 019402 75 LQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVVGGERSLVANLS 136 (341)
Q Consensus 75 ~~lg~~v~li~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~~ 136 (341)
||+|.++.|+|-+.- +.+.+.|+++ .+...+. ..||-.+-+...+|+...+.+++
T Consensus 339 LGfGfRcGFLGlLHm----eiiqERLeRE-f~ldlI~--TaPsV~Y~v~~~~g~~~~i~NPs 393 (603)
T COG0481 339 LGFGFRCGFLGLLHM----EIIQERLERE-FDLDLIT--TAPSVVYKVELTDGEEIEVDNPS 393 (603)
T ss_pred ccCceeehhhhHHHH----HHHHHHHHHh-hCcceEe--cCCceEEEEEEcCCcEEEecChH
Confidence 678899999998764 4566777654 5555453 45677777777788887766543
No 171
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=28.17 E-value=2.3e+02 Score=20.61 Aligned_cols=60 Identities=13% Similarity=0.093 Sum_probs=34.3
Q ss_pred hhcceEEEEecccccc-CHHHHHHHHHHHHhcC---CeEEEeCCcHHHHhhhhHHHHhhCCCCcEEE
Q 019402 155 VEKAKYYYIAGFFLTV-SPESIQMVAEHAAAKN---KVFMMNLSAPFICEFFREPQEKALPYMDYVF 217 (341)
Q Consensus 155 ~~~~~~v~i~~~~~~~-~~~~~~~~~~~~~~~~---~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~ 217 (341)
.+++|++++..-+..- ..+.....++.+++.+ .++++----+. ...+.+.+..+.+|+++
T Consensus 34 ~e~AD~iiiNTC~V~~~Ae~k~~~~i~~l~~~~~~~~~ivv~GC~aq---~~~~~l~~~~p~vd~v~ 97 (98)
T PF00919_consen 34 PEEADVIIINTCTVRESAEQKSRNRIRKLKKLKKPGAKIVVTGCMAQ---RYGEELKKEFPEVDLVV 97 (98)
T ss_pred cccCCEEEEEcCCCCcHHHHHHHHHHHHHHHhcCCCCEEEEEeCccc---cChHHHHhhCCCeEEEe
Confidence 3578999998765322 2234444445555444 55555433222 13455777888888875
No 172
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=28.14 E-value=3.3e+02 Score=22.80 Aligned_cols=40 Identities=8% Similarity=-0.041 Sum_probs=27.8
Q ss_pred HhhhhcceEEEEecccc-ccCHHHHHHHHHHHHhcCCeEEE
Q 019402 152 WSIVEKAKYYYIAGFFL-TVSPESIQMVAEHAAAKNKVFMM 191 (341)
Q Consensus 152 ~~~~~~~~~v~i~~~~~-~~~~~~~~~~~~~~~~~~~~v~~ 191 (341)
...++..|.+++..... ....+....+++.+++.|++.++
T Consensus 59 ~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v 99 (233)
T PF05368_consen 59 VAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFV 99 (233)
T ss_dssp HHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEE
T ss_pred HHHHcCCceEEeecCcchhhhhhhhhhHHHhhhccccceEE
Confidence 36788999988765322 22346788899999999987555
No 173
>KOG3361 consensus Iron binding protein involved in Fe-S cluster formation [Energy production and conversion]
Probab=28.12 E-value=59 Score=25.03 Aligned_cols=35 Identities=20% Similarity=0.337 Sum_probs=27.2
Q ss_pred CCCCcchhhHHHHH-HHHhcCCCHHHHHHHHHHHHh
Q 019402 290 DTNGAGDAFVGGFL-SQLVQEKPVEDCVRTGCYAAN 324 (341)
Q Consensus 290 dttGAGDaf~a~~~-~~l~~g~~~~~a~~~A~~~aa 324 (341)
-|.|||-+-++.-+ .-|.+|.++++++.+-|.--|
T Consensus 85 KTFGCGSAIASSS~aTewvkgkt~dea~kIkNteIA 120 (157)
T KOG3361|consen 85 KTFGCGSAIASSSLATEWVKGKTLDEALKIKNTEIA 120 (157)
T ss_pred eecccchHhhhhHHHHHHHccccHHHHHhcccHHHH
Confidence 57899998776544 469999999999987765443
No 174
>COG4868 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.02 E-value=97 Score=27.96 Aligned_cols=52 Identities=13% Similarity=0.108 Sum_probs=40.4
Q ss_pred hCCCCceEEEEeecCCchhHHHHHHHHhcCCceeEe-ecCCCCcceEEEEEeC
Q 019402 75 LQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYY-EDESAPTGTCAVCVVG 126 (341)
Q Consensus 75 ~~lg~~v~li~~vG~D~~g~~i~~~l~~~gi~~~~~-~~~~~~t~~~~~~~~~ 126 (341)
+++-+....++..-+++....+++.|+++||+...- .+++.||....++.++
T Consensus 104 l~~~v~sVViTqyed~p~a~aF~~rLEr~Gikvy~H~~ikGYPtD~~~IvS~E 156 (493)
T COG4868 104 LDIKVGSVVITQYEDQPAADAFRTRLERNGIKVYLHYPIKGYPTDVDHIVSDE 156 (493)
T ss_pred cCeeeeeEEEEecCCChhHHHHHHHHHhcCcceEEecccCCCCCchhheeCcc
Confidence 343345678899999999999999999999988643 4678888877766653
No 175
>cd02772 MopB_NDH-1_NuoG2 MopB_NDH-1_NuoG2: The second domain of the NuoG subunit of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1), found in beta- and gammaproteobacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evidence remains of a molybdopterin binding site, this protein domain belongs to t
Probab=27.69 E-value=3.2e+02 Score=25.53 Aligned_cols=44 Identities=11% Similarity=0.041 Sum_probs=28.2
Q ss_pred hhhhcceEEEEeccccccCHHHHHHHHHHHHhcCCe-EEEeCCcH
Q 019402 153 SIVEKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKV-FMMNLSAP 196 (341)
Q Consensus 153 ~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~-v~~d~~~~ 196 (341)
..+.++|++.+=|..+..........+.+++++|.+ +++|++..
T Consensus 148 ~di~~ad~il~~G~n~~~~~p~~~~~l~~a~~~g~k~i~idp~~~ 192 (414)
T cd02772 148 AEISELDRVLVIGSNLRKEHPLLAQRLRQAVKKGAKLSAINPADD 192 (414)
T ss_pred HHHHhCCEEEEECCCccccchHHHHHHHHHHHcCCEEEEEeCccc
Confidence 457789999888765422222344555667777866 67798654
No 176
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=27.56 E-value=1.8e+02 Score=23.18 Aligned_cols=90 Identities=11% Similarity=0.059 Sum_probs=50.4
Q ss_pred CCchhHHHHHHHHhcCCceeEeecCCCCcceEEEEEeCCeeceeecccccccCCcccCCCchhHhhhhcceEEEEecccc
Q 019402 89 KDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVVGGERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYIAGFFL 168 (341)
Q Consensus 89 ~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~ 168 (341)
+...|..+.+.|.+.|.++..+......... ..+-+.+.. +..++ ....+.++.+|.++......
T Consensus 7 tG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-----~~~~~~~~~-----d~~d~-----~~~~~al~~~d~vi~~~~~~ 71 (183)
T PF13460_consen 7 TGFVGRALAKQLLRRGHEVTALVRSPSKAED-----SPGVEIIQG-----DLFDP-----DSVKAALKGADAVIHAAGPP 71 (183)
T ss_dssp TSHHHHHHHHHHHHTTSEEEEEESSGGGHHH-----CTTEEEEES-----CTTCH-----HHHHHHHTTSSEEEECCHST
T ss_pred CChHHHHHHHHHHHCCCEEEEEecCchhccc-----cccccccee-----eehhh-----hhhhhhhhhcchhhhhhhhh
Confidence 3578888999998888777665322221111 111111110 01111 12335778899988875322
Q ss_pred ccCHHHHHHHHHHHHhcCCeEEEeC
Q 019402 169 TVSPESIQMVAEHAAAKNKVFMMNL 193 (341)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~v~~d~ 193 (341)
....+....+++.+++.+++-++-.
T Consensus 72 ~~~~~~~~~~~~a~~~~~~~~~v~~ 96 (183)
T PF13460_consen 72 PKDVDAAKNIIEAAKKAGVKRVVYL 96 (183)
T ss_dssp TTHHHHHHHHHHHHHHTTSSEEEEE
T ss_pred cccccccccccccccccccccceee
Confidence 2235678888899988887644433
No 177
>PRK09330 cell division protein FtsZ; Validated
Probab=27.49 E-value=4.1e+02 Score=24.84 Aligned_cols=73 Identities=16% Similarity=0.065 Sum_probs=40.7
Q ss_pred hHhhhhcceEEEEeccccccC-HHHHHHHHHHHHhcCCeEEEeCCcH------HHHhhhhHHHHhhCCCCcEEE-cCHHH
Q 019402 151 IWSIVEKAKYYYIAGFFLTVS-PESIQMVAEHAAAKNKVFMMNLSAP------FICEFFREPQEKALPYMDYVF-GNETE 222 (341)
Q Consensus 151 ~~~~~~~~~~v~i~~~~~~~~-~~~~~~~~~~~~~~~~~v~~d~~~~------~~~~~~~~~~~~~l~~~dil~-~n~~E 222 (341)
..+.++.+|.+++..-.-... .....-+.+.+++.++.++-=+..| .........+.++.+++|.++ ++.+.
T Consensus 91 I~~~l~~~D~vfI~AGmGGGTGTGaapvIA~iake~g~ltvaVvt~PF~fEG~~r~~nA~~gL~~L~~~~D~vIvi~Nd~ 170 (384)
T PRK09330 91 IREALEGADMVFITAGMGGGTGTGAAPVVAEIAKELGILTVAVVTKPFSFEGKKRMKQAEEGIEELRKHVDTLIVIPNDK 170 (384)
T ss_pred HHHHHcCCCEEEEEecCCCcccHHHHHHHHHHHHHcCCcEEEEEecCccccchhHHHHHHHHHHHHHHHCCEEEEEecHH
Confidence 346788999998875322222 2344455677778886532211111 112224456778888998877 44444
Q ss_pred H
Q 019402 223 A 223 (341)
Q Consensus 223 ~ 223 (341)
+
T Consensus 171 L 171 (384)
T PRK09330 171 L 171 (384)
T ss_pred H
Confidence 3
No 178
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=27.06 E-value=68 Score=24.69 Aligned_cols=91 Identities=26% Similarity=0.357 Sum_probs=47.3
Q ss_pred EEeecCCchhHHHHHHHHhcCCceeEeecCCCCcceEEEEEeCCeeceeecccccccCCcccCCCchhHhhhhcceEEEE
Q 019402 84 IGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVVGGERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYI 163 (341)
Q Consensus 84 i~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i 163 (341)
|+.+|...-|..+-..|.+.|..+..+........ ++. -...+..... . ..+.+.++|++.+
T Consensus 13 I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa---------~~a-~~~~~~~~~~---~-----~~~~~~~aDlv~i 74 (127)
T PF10727_consen 13 IGIIGAGRVGTALARALARAGHEVVGVYSRSPASA---------ERA-AAFIGAGAIL---D-----LEEILRDADLVFI 74 (127)
T ss_dssp EEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HH---------HHH-HC--TT-------------TTGGGCC-SEEEE
T ss_pred EEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccc---------ccc-cccccccccc---c-----cccccccCCEEEE
Confidence 45566667888899999999887766531110000 000 0000000001 1 1245678999999
Q ss_pred eccccccCHHHHHHHHHHHHhcC----CeEEEeCCcHH
Q 019402 164 AGFFLTVSPESIQMVAEHAAAKN----KVFMMNLSAPF 197 (341)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~----~~v~~d~~~~~ 197 (341)
+ .+++.+..+++.+.+.+ -++++-.++..
T Consensus 75 a-----vpDdaI~~va~~La~~~~~~~g~iVvHtSGa~ 107 (127)
T PF10727_consen 75 A-----VPDDAIAEVAEQLAQYGAWRPGQIVVHTSGAL 107 (127)
T ss_dssp ------S-CCHHHHHHHHHHCC--S-TT-EEEES-SS-
T ss_pred E-----echHHHHHHHHHHHHhccCCCCcEEEECCCCC
Confidence 5 57778899998888762 24666665543
No 179
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=26.53 E-value=5e+02 Score=23.75 Aligned_cols=93 Identities=16% Similarity=0.193 Sum_probs=52.2
Q ss_pred CceEEEEeecCCchhHHHHHHHHhcCCce---eEeecCCCCcceEEEEEeCCeeceeecccccccCCcccCCCchhHhhh
Q 019402 79 GATSYIGCIGKDKFGEEMKKNSTAAGVNV---KYYEDESAPTGTCAVCVVGGERSLVANLSAANCYKSEHLKRPEIWSIV 155 (341)
Q Consensus 79 ~~v~li~~vG~D~~g~~i~~~l~~~gi~~---~~~~~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (341)
.++.++|.-| .-|+.+.+.|.+..... ..+ .+....+..+.+ .+. .+..+.++. ..+
T Consensus 5 ~~vaIvGATG--~vG~ellrlL~~~~hP~~~l~~l-aS~~saG~~~~~--~~~-----------~~~v~~~~~----~~~ 64 (336)
T PRK08040 5 WNIALLGATG--AVGEALLELLAERQFPVGELYAL-ASEESAGETLRF--GGK-----------SVTVQDAAE----FDW 64 (336)
T ss_pred CEEEEEccCC--HHHHHHHHHHhcCCCCceEEEEE-EccCcCCceEEE--CCc-----------ceEEEeCch----hhc
Confidence 6677777755 67999999999843222 222 222233333321 111 111111221 123
Q ss_pred hcceEEEEeccccccCHHHHHHHHHHHHhcCCeEEEeCCcHH
Q 019402 156 EKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPF 197 (341)
Q Consensus 156 ~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~ 197 (341)
.+.|+++++ .+.+...++...+.+.|++ ++|.++.+
T Consensus 65 ~~~Dvvf~a-----~p~~~s~~~~~~~~~~g~~-VIDlS~~f 100 (336)
T PRK08040 65 SQAQLAFFV-----AGREASAAYAEEATNAGCL-VIDSSGLF 100 (336)
T ss_pred cCCCEEEEC-----CCHHHHHHHHHHHHHCCCE-EEECChHh
Confidence 578988884 3566777888888777775 57777544
No 180
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=26.46 E-value=3.8e+02 Score=23.23 Aligned_cols=66 Identities=12% Similarity=0.204 Sum_probs=38.2
Q ss_pred hhHhhhhcceEEEEecccc---------cc------CHHHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCCCCc
Q 019402 150 EIWSIVEKAKYYYIAGFFL---------TV------SPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMD 214 (341)
Q Consensus 150 ~~~~~~~~~~~v~i~~~~~---------~~------~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~d 214 (341)
+..+.+.++|+++.+|... .. ..+.+..+++.+.+.+.++++=-+.+...+...+.+.+-. ..+
T Consensus 54 ~~~~~l~~ad~i~~DG~gvv~~~~~~~~~~~~~Rv~G~dl~~~ll~~~~~~~~~v~llG~~~~v~~~a~~~l~~~y-~l~ 132 (243)
T PRK03692 54 ELRELINAAEYKYADGISVVRSIRKKYPQAQVSRVAGADLWEALMARAGKEGTPVFLVGGKPEVLAQTEAKLRTQW-NVN 132 (243)
T ss_pred HHHHHHHhCCEEecCCHHHHHHHHHhcCCCCCCeeChHHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHHHh-CCE
Confidence 3456777888888888621 00 1266778888888888777665555543333333343333 344
Q ss_pred EE
Q 019402 215 YV 216 (341)
Q Consensus 215 il 216 (341)
++
T Consensus 133 i~ 134 (243)
T PRK03692 133 IV 134 (243)
T ss_pred EE
Confidence 43
No 181
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=26.25 E-value=4.5e+02 Score=23.09 Aligned_cols=35 Identities=17% Similarity=0.263 Sum_probs=28.5
Q ss_pred CCCCcchhhHHHHHHHHh-----cCCCHHHHHHHHHHHHh
Q 019402 290 DTNGAGDAFVGGFLSQLV-----QEKPVEDCVRTGCYAAN 324 (341)
Q Consensus 290 dttGAGDaf~a~~~~~l~-----~g~~~~~a~~~A~~~aa 324 (341)
.-+|+|-+|..-|+-++. .|.+-++|.+++.....
T Consensus 170 alsgsgPAf~~~~~eal~~a~v~~Gl~~~~A~~l~~~t~~ 209 (272)
T PRK12491 170 SISGSSPAYVYMFIEAMADAAVLGGMPRKQAYKFAAQAVL 209 (272)
T ss_pred HhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 458999999999997765 58899999998877543
No 182
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=25.87 E-value=5.1e+02 Score=23.74 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=23.3
Q ss_pred cceEEEEeccc-cccCHHHHHHHHHHHHhcCCeEEEeCC
Q 019402 157 KAKYYYIAGFF-LTVSPESIQMVAEHAAAKNKVFMMNLS 194 (341)
Q Consensus 157 ~~~~v~i~~~~-~~~~~~~~~~~~~~~~~~~~~v~~d~~ 194 (341)
+.+++++.... +.....-+.++.+.+++.|+.+++|-.
T Consensus 125 ~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~t 163 (369)
T cd00614 125 ETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNT 163 (369)
T ss_pred CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECC
Confidence 45677765432 111112366777888888888888864
No 183
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=25.86 E-value=2e+02 Score=25.43 Aligned_cols=59 Identities=14% Similarity=0.097 Sum_probs=41.5
Q ss_pred Hhhhh-cceEEEEeccccccCHHHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCCC-CcEEEcC
Q 019402 152 WSIVE-KAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPY-MDYVFGN 219 (341)
Q Consensus 152 ~~~~~-~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~-~dil~~n 219 (341)
.+.++ .+|++.++ +++++.+.++.+.++.++ .+.++.++.. ..+.+..+.+. +|+++.+
T Consensus 202 ~eAl~agaDiImLD----Nm~~e~~~~av~~l~~~~-~~~lEaSGgI----t~~ni~~yA~tGVD~IS~g 262 (280)
T COG0157 202 EEALEAGADIIMLD----NMSPEELKEAVKLLGLAG-RALLEASGGI----TLENIREYAETGVDVISVG 262 (280)
T ss_pred HHHHHcCCCEEEec----CCCHHHHHHHHHHhccCC-ceEEEEeCCC----CHHHHHHHhhcCCCEEEeC
Confidence 34443 48999999 578888888888874333 6667776654 44556677665 9999874
No 184
>PRK07582 cystathionine gamma-lyase; Validated
Probab=25.85 E-value=5.2e+02 Score=23.73 Aligned_cols=56 Identities=11% Similarity=0.087 Sum_probs=26.5
Q ss_pred CCceeecCchhHHHHHHHHHHhCCCCceEEEEeecCCchhHHHHHHHHhcCCceeEee
Q 019402 54 ENVEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYE 111 (341)
Q Consensus 54 ~~~~~~~GG~~~n~a~~l~~l~~lg~~v~li~~vG~D~~g~~i~~~l~~~gi~~~~~~ 111 (341)
...-...+|...+.+...+ +++.|.++ ++..-+.......+...++..|+++.++.
T Consensus 66 ~~~v~~~sG~~Ai~~~l~a-ll~~Gd~V-l~~~~~y~~~~~~~~~~l~~~G~~v~~v~ 121 (366)
T PRK07582 66 AEALVFPSGMAAITAVLRA-LLRPGDTV-VVPADGYYQVRALAREYLAPLGVTVREAP 121 (366)
T ss_pred CCEEEECCHHHHHHHHHHH-hcCCCCEE-EEeCCCcHhHHHHHHHHHhcCeEEEEEEC
Confidence 3444555665554443333 45545433 33322211122233345667788777764
No 185
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=25.42 E-value=3.5e+02 Score=24.93 Aligned_cols=66 Identities=14% Similarity=0.004 Sum_probs=35.7
Q ss_pred HhhhhcceEEEEeccccccCH-HHHHHHHHHHHhcCCeE-EE--eCCc---HHHHhhhhHHHHhhCCCCcEEE
Q 019402 152 WSIVEKAKYYYIAGFFLTVSP-ESIQMVAEHAAAKNKVF-MM--NLSA---PFICEFFREPQEKALPYMDYVF 217 (341)
Q Consensus 152 ~~~~~~~~~v~i~~~~~~~~~-~~~~~~~~~~~~~~~~v-~~--d~~~---~~~~~~~~~~~~~~l~~~dil~ 217 (341)
.+.++.+|.+.+....-.... ....-+.+.+++.++.+ .+ -|.. ..........+.++.+++|.++
T Consensus 96 r~~le~~D~vfI~aglGGGTGSG~apvia~~ake~~~l~vaivt~Pf~~Eg~~r~~nA~~~l~~L~~~~D~vi 168 (349)
T TIGR00065 96 RKLLEGADMVFITAGMGGGTGTGAAPVVAKIAKELGALTVAVVTKPFKFEGLKRRKKAEEGLERLKQAVDTLI 168 (349)
T ss_pred HHHHhCCCEEEEEEeccCccchhHHHHHHHHHHHcCCCEEEEEeCCccccchhhHHHHHHHHHHHHHhCCEEE
Confidence 357788999888653222222 33445556667777552 22 2211 1111223445777888888877
No 186
>PRK13018 cell division protein FtsZ; Provisional
Probab=25.30 E-value=3.2e+02 Score=25.48 Aligned_cols=66 Identities=14% Similarity=0.046 Sum_probs=37.5
Q ss_pred HhhhhcceEEEEeccccccC-HHHHHHHHHHHHhcCCeE---EEeCCc---HHHHhhhhHHHHhhCCCCcEEE
Q 019402 152 WSIVEKAKYYYIAGFFLTVS-PESIQMVAEHAAAKNKVF---MMNLSA---PFICEFFREPQEKALPYMDYVF 217 (341)
Q Consensus 152 ~~~~~~~~~v~i~~~~~~~~-~~~~~~~~~~~~~~~~~v---~~d~~~---~~~~~~~~~~~~~~l~~~dil~ 217 (341)
.+.++.+|.|++....-... ......+++.+++.+..+ +.-|-. ..........+.++.+++|.++
T Consensus 107 ~~~le~~D~vfI~aGLGGGTGSGaapvIa~iake~g~ltv~vVt~Pf~~EG~~r~~nA~~gL~~L~e~~D~vi 179 (378)
T PRK13018 107 KEVLKGADLVFVTAGMGGGTGTGAAPVVAEIAKEQGALVVGVVTKPFKFEGRARMQKAEEGIERLREAADTVI 179 (378)
T ss_pred HHHhcCCCEEEEEeeccCcchhhHHHHHHHHHHHcCCCeEEEEEcCcccccHhHHHHHHHHHHHHHHhCCEEE
Confidence 35678899988865332222 244566667777777653 222211 1111113345778888888877
No 187
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=25.24 E-value=3.5e+02 Score=24.69 Aligned_cols=66 Identities=15% Similarity=0.162 Sum_probs=36.4
Q ss_pred hhHhhhhcceEEEEeccccccCHHHHHHHHHHHH---hcCCeEEEeCCcHHH--HhhhhHHHHhhCCC--CcEEE-cCH
Q 019402 150 EIWSIVEKAKYYYIAGFFLTVSPESIQMVAEHAA---AKNKVFMMNLSAPFI--CEFFREPQEKALPY--MDYVF-GNE 220 (341)
Q Consensus 150 ~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~---~~~~~v~~d~~~~~~--~~~~~~~~~~~l~~--~dil~-~n~ 220 (341)
+..+.++.+|++++. +|...+..++++.+ ..+.+++.-..+... .....+.+.+.++. +-+++ ||.
T Consensus 64 Dl~~a~~~ad~iv~a-----vPs~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~ 137 (329)
T COG0240 64 DLAEALDGADIIVIA-----VPSQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSF 137 (329)
T ss_pred CHHHHHhcCCEEEEE-----CChHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECccH
Confidence 445677889999994 67777788887775 233444332211110 11134556667763 34444 444
No 188
>PF11167 DUF2953: Protein of unknown function (DUF2953); InterPro: IPR021338 This family of proteins has no known function.
Probab=25.16 E-value=49 Score=20.87 Aligned_cols=19 Identities=42% Similarity=0.427 Sum_probs=16.2
Q ss_pred CCCcchhhHHHHHHHHhcC
Q 019402 291 TNGAGDAFVGGFLSQLVQE 309 (341)
Q Consensus 291 ttGAGDaf~a~~~~~l~~g 309 (341)
+.|.+|+...|+++|++..
T Consensus 2 ~~G~~Daa~Tgi~~G~l~~ 20 (53)
T PF11167_consen 2 TIGLGDAADTGILYGLLWA 20 (53)
T ss_pred eeeccCHHHHHHHHHHHHH
Confidence 3699999999999998763
No 189
>COG1244 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=25.04 E-value=5.3e+02 Score=23.54 Aligned_cols=86 Identities=19% Similarity=0.222 Sum_probs=57.2
Q ss_pred EEEecccc---ccCHHHHHHHHHHHHhcC--CeEEEeCCcHHHHhhhhHHHHhhCCC--CcEEE---cCHHHHHHHHhhc
Q 019402 161 YYIAGFFL---TVSPESIQMVAEHAAAKN--KVFMMNLSAPFICEFFREPQEKALPY--MDYVF---GNETEARTFAKVH 230 (341)
Q Consensus 161 v~i~~~~~---~~~~~~~~~~~~~~~~~~--~~v~~d~~~~~~~~~~~~~~~~~l~~--~dil~---~n~~E~~~l~~~~ 230 (341)
++-+|+.+ ++++++..++++...+.+ ..++++-++.+..+++.+.+.++++. ..+-+ -..++.+..+=-.
T Consensus 106 IFTSGSFLD~~EVP~e~R~~Il~~is~~~~v~~vvvESRpE~I~eE~l~e~~~il~gk~~EvaIGLETanD~ire~sINK 185 (358)
T COG1244 106 IFTSGSFLDPEEVPREARRYILERISENDNVKEVVVESRPEFIREERLEEITEILEGKIVEVAIGLETANDKIREDSINK 185 (358)
T ss_pred EEcccccCChhhCCHHHHHHHHHHHhhccceeEEEeecCchhcCHHHHHHHHHhhCCceEEEEEecccCcHHHHHHhhhc
Confidence 33444443 667899999999998886 45999999888887777778887664 44444 2334445444344
Q ss_pred CCCCCCHHHHHHHHhc
Q 019402 231 GWETDNVEEIALKISQ 246 (341)
Q Consensus 231 ~~~~~~~~~~~~~l~~ 246 (341)
|.+.++..++++.++.
T Consensus 186 GftF~df~~A~~~ir~ 201 (358)
T COG1244 186 GFTFEDFVRAAEIIRN 201 (358)
T ss_pred CCcHHHHHHHHHHHHH
Confidence 5555666667777753
No 190
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=24.98 E-value=2.2e+02 Score=20.11 Aligned_cols=37 Identities=19% Similarity=0.070 Sum_probs=28.5
Q ss_pred hcceEEEEeccccccCHHHHHHHHHHHHhcCCeEEEeCCc
Q 019402 156 EKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSA 195 (341)
Q Consensus 156 ~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~ 195 (341)
.....+++.. +.++..+..+...|.+.++++.+-++-
T Consensus 28 g~~~~v~iA~---Da~~~vv~~l~~lceek~Ip~v~V~s~ 64 (84)
T PRK13600 28 DQVTSLIIAE---DVEVYLMTRVLSQINQKNIPVSFFKSK 64 (84)
T ss_pred CCceEEEEeC---CCCHHHHHHHHHHHHHcCCCEEEECCH
Confidence 3467888876 667778888889999999888776653
No 191
>PRK05939 hypothetical protein; Provisional
Probab=24.95 E-value=5.7e+02 Score=23.87 Aligned_cols=38 Identities=0% Similarity=0.148 Sum_probs=25.8
Q ss_pred cceEEEEeccc-cccCHHHHHHHHHHHHhcCCeEEEeCC
Q 019402 157 KAKYYYIAGFF-LTVSPESIQMVAEHAAAKNKVFMMNLS 194 (341)
Q Consensus 157 ~~~~v~i~~~~-~~~~~~~~~~~~~~~~~~~~~v~~d~~ 194 (341)
+.++|++...+ +.....-+..+.+.++++|+.+++|-.
T Consensus 131 ~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t 169 (397)
T PRK05939 131 NTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNT 169 (397)
T ss_pred CCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECC
Confidence 46677776432 222234577888888999999988874
No 192
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=24.83 E-value=5e+02 Score=23.89 Aligned_cols=72 Identities=18% Similarity=0.139 Sum_probs=41.2
Q ss_pred cceEEEEeccc-------cccCHHHHHHHHHHHHhcCCeEEEeCCcHHHH---hhhhHHHHhhCC-CCcEEEcCHHHHHH
Q 019402 157 KAKYYYIAGFF-------LTVSPESIQMVAEHAAAKNKVFMMNLSAPFIC---EFFREPQEKALP-YMDYVFGNETEART 225 (341)
Q Consensus 157 ~~~~v~i~~~~-------~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~---~~~~~~~~~~l~-~~dil~~n~~E~~~ 225 (341)
.+|.||++... .+.+.+.+.+.++.++++|+++++-....... ..+.+.++.+.+ .+|-+++++--+-.
T Consensus 26 GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~GvDaviv~Dpg~i~ 105 (347)
T COG0826 26 GADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLVELGVDAVIVADPGLIM 105 (347)
T ss_pred CCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 46888887541 13455678888888888888754433221111 112344455544 47777777666555
Q ss_pred HHh
Q 019402 226 FAK 228 (341)
Q Consensus 226 l~~ 228 (341)
+..
T Consensus 106 l~~ 108 (347)
T COG0826 106 LAR 108 (347)
T ss_pred HHH
Confidence 554
No 193
>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=24.81 E-value=1.5e+02 Score=28.83 Aligned_cols=42 Identities=10% Similarity=0.065 Sum_probs=28.1
Q ss_pred hhhhcceEEEEecccccc-CHHHHHHHHHHHHhcCCe-EEEeCCc
Q 019402 153 SIVEKAKYYYIAGFFLTV-SPESIQMVAEHAAAKNKV-FMMNLSA 195 (341)
Q Consensus 153 ~~~~~~~~v~i~~~~~~~-~~~~~~~~~~~~~~~~~~-v~~d~~~ 195 (341)
+.+.++|++.+=|.++.. .+ .....+..++++|.+ +++||+.
T Consensus 153 ~d~~~ad~il~~G~Np~~s~p-~~~~~~~~a~~~GaklivvDPr~ 196 (501)
T cd02766 153 EDMVNADLIVIWGINPAATNI-HLMRIIQEARKRGAKVVVIDPYR 196 (501)
T ss_pred HHHhcCCEEEEECCChhhhch-hHHHHHHHHHHCCCEEEEECCCC
Confidence 457789999998876422 23 233445567788866 7889865
No 194
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=24.44 E-value=2.7e+02 Score=24.67 Aligned_cols=73 Identities=11% Similarity=-0.122 Sum_probs=41.0
Q ss_pred hcceEEEEeccccccCHHHHHHHHHHHHhcCCeEEEeCCcH--HHHh-hhhHHHHhhCCCCcEEEcC-HHHHHHHHh
Q 019402 156 EKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAP--FICE-FFREPQEKALPYMDYVFGN-ETEARTFAK 228 (341)
Q Consensus 156 ~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~--~~~~-~~~~~~~~~l~~~dil~~n-~~E~~~l~~ 228 (341)
.+.|++++..+.....+.....+....+..+.++++..... .... ........+++.+|.+++. .+.++.+..
T Consensus 75 ~~~dii~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~ 151 (366)
T cd03822 75 SGPDVVVIQHEYGIFGGEAGLYLLLLLRGLGIPVVVTLHTVLLHEPRPGDRALLRLLLRRADAVIVMSSELLRALLL 151 (366)
T ss_pred cCCCEEEEeeccccccchhhHHHHHHHhhcCCCEEEEEecCCccccchhhhHHHHHHHhcCCEEEEeeHHHHHHHHh
Confidence 46789998653222233333444444456777776666543 1111 1223355677888888855 777776654
No 195
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=24.32 E-value=1.4e+02 Score=24.51 Aligned_cols=46 Identities=17% Similarity=0.255 Sum_probs=35.6
Q ss_pred ceEEEEeecCCchhHHHHHHHHhcCCceeEeecCCCCcceEEEEEeC
Q 019402 80 ATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVVG 126 (341)
Q Consensus 80 ~v~li~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~ 126 (341)
.=++||.+|++.--..|...+...|. +..+++.-.|.+++|+.+++
T Consensus 11 ~kVYVGnL~~~a~k~eLE~~F~~yG~-lrsvWvArnPPGfAFVEFed 56 (195)
T KOG0107|consen 11 TKVYVGNLGSRATKRELERAFSKYGP-LRSVWVARNPPGFAFVEFED 56 (195)
T ss_pred ceEEeccCCCCcchHHHHHHHHhcCc-ceeEEEeecCCCceEEeccC
Confidence 44789999999887888889998984 55555555788999998864
No 196
>PRK15447 putative protease; Provisional
Probab=24.15 E-value=5.2e+02 Score=23.11 Aligned_cols=70 Identities=14% Similarity=0.036 Sum_probs=42.6
Q ss_pred cceEEEEecccc----ccCHHHHHHHHHHHHhcCCeEEEeCCcHH-HHhhhhHHHHhhCC-CCcEEE-cCHHHHHHHH
Q 019402 157 KAKYYYIAGFFL----TVSPESIQMVAEHAAAKNKVFMMNLSAPF-ICEFFREPQEKALP-YMDYVF-GNETEARTFA 227 (341)
Q Consensus 157 ~~~~v~i~~~~~----~~~~~~~~~~~~~~~~~~~~v~~d~~~~~-~~~~~~~~~~~~l~-~~dil~-~n~~E~~~l~ 227 (341)
.+|.||++.... +.+.+.+.++++.++++|+++++-...-. ...+. +.+.++++ ..|.+. -|-.++..+-
T Consensus 28 gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~gkkvyva~p~i~~~~~e~-~~l~~~l~~~~~~v~v~d~g~l~~~~ 104 (301)
T PRK15447 28 PVDIVYLGETVCSKRRELKVGDWLELAERLAAAGKEVVLSTLALVEAPSEL-KELRRLVENGEFLVEANDLGAVRLLA 104 (301)
T ss_pred CCCEEEECCccCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccccCHHHH-HHHHHHHhcCCCEEEEeCHHHHHHHH
Confidence 689999985432 36778999999999999999877542211 11111 22333443 345444 4666655444
No 197
>PRK04296 thymidine kinase; Provisional
Probab=23.87 E-value=1.6e+02 Score=24.23 Aligned_cols=60 Identities=15% Similarity=-0.065 Sum_probs=36.8
Q ss_pred cceEEEEeccccccCHHHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCCCCcEEE
Q 019402 157 KAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVF 217 (341)
Q Consensus 157 ~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~ 217 (341)
+.|+|.++.... ++.+.+.++++.+++.|+.+++--..............++++.+|.+.
T Consensus 78 ~~dvviIDEaq~-l~~~~v~~l~~~l~~~g~~vi~tgl~~~~~~~~f~~~~~L~~~aD~V~ 137 (190)
T PRK04296 78 KIDCVLIDEAQF-LDKEQVVQLAEVLDDLGIPVICYGLDTDFRGEPFEGSPYLLALADKVT 137 (190)
T ss_pred CCCEEEEEcccc-CCHHHHHHHHHHHHHcCCeEEEEecCcccccCcCchHHHHHHhcCeEE
Confidence 578999987543 445667889999899998876644332211111112445666677665
No 198
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=23.85 E-value=2.8e+02 Score=22.90 Aligned_cols=58 Identities=14% Similarity=0.045 Sum_probs=37.3
Q ss_pred hcceEEEEeccccccCHHHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCC-CCcEEEcC
Q 019402 156 EKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALP-YMDYVFGN 219 (341)
Q Consensus 156 ~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~-~~dil~~n 219 (341)
..+|++.+... .+...+.++++.+++.|+++.++...+.. ..+....+.+ .+|++.++
T Consensus 75 ~Gad~i~vh~~---~~~~~~~~~i~~~~~~g~~~~~~~~~~~t---~~~~~~~~~~~g~d~v~~~ 133 (206)
T TIGR03128 75 AGADIVTVLGV---ADDATIKGAVKAAKKHGKEVQVDLINVKD---KVKRAKELKELGADYIGVH 133 (206)
T ss_pred cCCCEEEEecc---CCHHHHHHHHHHHHHcCCEEEEEecCCCC---hHHHHHHHHHcCCCEEEEc
Confidence 35788877653 24456788999999999998877533211 1122334444 79999874
No 199
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=23.55 E-value=1.2e+02 Score=18.74 Aligned_cols=23 Identities=9% Similarity=0.059 Sum_probs=17.7
Q ss_pred EcCHHHHHHHHhhcCCCCCCHHHHHHHH
Q 019402 217 FGNETEARTFAKVHGWETDNVEEIALKI 244 (341)
Q Consensus 217 ~~n~~E~~~l~~~~~~~~~~~~~~~~~l 244 (341)
+++.+|+..|++ .....+.++.|
T Consensus 2 fLT~~El~elTG-----~k~~~~Q~~~L 24 (47)
T PF13986_consen 2 FLTDEELQELTG-----YKRPSKQIRWL 24 (47)
T ss_pred CCCHHHHHHHHC-----CCCHHHHHHHH
Confidence 578999999998 34566777777
No 200
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=23.32 E-value=2.5e+02 Score=26.51 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=14.7
Q ss_pred CHHHHHHHHHHHHhcCCeEEEe
Q 019402 171 SPESIQMVAEHAAAKNKVFMMN 192 (341)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~v~~d 192 (341)
+++.+..++.-+.+.++.++.|
T Consensus 244 ~~e~L~~ll~Fa~~kniHvI~D 265 (471)
T KOG0256|consen 244 SPEELISLLNFASRKNIHVISD 265 (471)
T ss_pred CHHHHHHHHHHHhhcceEEEee
Confidence 5667777777777766666555
No 201
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=23.26 E-value=5.8e+02 Score=23.90 Aligned_cols=107 Identities=11% Similarity=0.128 Sum_probs=58.7
Q ss_pred HhCCCCceEEEEeecCCchhHHHHHHHHhcCCceeEeecCCCCcceEEEEEeCCeeceeecccccccCCcccCCCchhHh
Q 019402 74 MLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVVGGERSLVANLSAANCYKSEHLKRPEIWS 153 (341)
Q Consensus 74 l~~lg~~v~li~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (341)
+.+.|.++.--+.+=...+ ..+...|++.||++.++...+..+ +.. .
T Consensus 97 la~aGD~iVss~~LYGGT~-~lf~~tl~~~Gi~v~fvd~~d~~~----------------------------~~~----a 143 (426)
T COG2873 97 LAGAGDNIVSSSKLYGGTY-NLFSHTLKRLGIEVRFVDPDDPEN----------------------------FEA----A 143 (426)
T ss_pred hccCCCeeEeeccccCchH-HHHHHHHHhcCcEEEEeCCCCHHH----------------------------HHH----H
Confidence 4555666655544322223 345666789999888874222100 000 0
Q ss_pred hhhcceEEEEeccc-cccCHHHHHHHHHHHHhcCCeEEEeCCc--HHHHhhhhHHHHhhCCCCcEEEcCH
Q 019402 154 IVEKAKYYYIAGFF-LTVSPESIQMVAEHAAAKNKVFMMNLSA--PFICEFFREPQEKALPYMDYVFGNE 220 (341)
Q Consensus 154 ~~~~~~~v~i~~~~-~~~~~~~~~~~~~~~~~~~~~v~~d~~~--~~~~~~~~~~~~~~l~~~dil~~n~ 220 (341)
.-.+.+.|++.... +...---++.+.+.|+++|+++++|-.- ++ .++.+-..+||++=|.
T Consensus 144 I~~nTkavf~EtigNP~~~v~Die~ia~iAh~~gvpliVDNT~atpy-------l~rP~~hGADIVvHS~ 206 (426)
T COG2873 144 IDENTKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTFATPY-------LCRPIEHGADIVVHSA 206 (426)
T ss_pred hCcccceEEEEeccCCCccccCHHHHHHHHHHcCCcEEEecCCCcce-------ecchhhcCCCEEEEee
Confidence 11244555555433 1111223577788899999999998642 22 2445556799998643
No 202
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=23.23 E-value=2.5e+02 Score=19.74 Aligned_cols=36 Identities=14% Similarity=0.068 Sum_probs=26.5
Q ss_pred hcceEEEEeccccccCHHHHHHHHHHHHhcCCeEEEeCC
Q 019402 156 EKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLS 194 (341)
Q Consensus 156 ~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~ 194 (341)
.++..|++.. +.++++...+...|+..++++.+..+
T Consensus 23 gkakLViiA~---Da~~~~~k~i~~~c~~~~Vpv~~~~t 58 (82)
T PRK13601 23 CNVLQVYIAK---DAEEHVTKKIKELCEEKSIKIVYIDT 58 (82)
T ss_pred CCeeEEEEeC---CCCHHHHHHHHHHHHhCCCCEEEeCC
Confidence 4667777765 66778888888888888888765554
No 203
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=22.80 E-value=1.3e+02 Score=31.54 Aligned_cols=52 Identities=29% Similarity=0.528 Sum_probs=33.2
Q ss_pred HhcCCCCCCCCccEEEEeeC----CCCEEEEeCCeEEEEecccCCCCcccCCCCcchhhHHHHH
Q 019402 244 ISQWPKASGTHKRITVITQG----ADPVVVAEDGKVKLFPVILLPKEKLVDTNGAGDAFVGGFL 303 (341)
Q Consensus 244 l~~~~~~~~~~~~~vvvt~G----~~G~~~~~~~~~~~v~~~~~~~~~vvdttGAGDaf~a~~~ 303 (341)
|.+++++-++|+-+.|.-.| +-|..+.+.|+... .+++|.|||||.=++.-+
T Consensus 72 L~kyPeYDGRgV~IaIlDtGvDP~apGl~vttdGkpKv--------~dviDctGaGDVDts~~v 127 (1304)
T KOG1114|consen 72 LKKYPEYDGRGVTIAILDTGVDPSAPGLQVTTDGKPKV--------KDVIDCTGAGDVDTSTEV 127 (1304)
T ss_pred HHhCcCCCCCceEEEEeecCCCCCCCCceEecCCCcce--------eEEEecCCCCccccceEE
Confidence 44444434666666665554 45777777776532 178999999998665433
No 204
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=22.47 E-value=3.3e+02 Score=20.28 Aligned_cols=76 Identities=20% Similarity=0.250 Sum_probs=43.5
Q ss_pred CCchhHHHHHHHHhcCCceeEeecCCCCcceEEEEEeCCeeceeecccccccCCcccCCCchhHhhhhcceEEEEecccc
Q 019402 89 KDKFGEEMKKNSTAAGVNVKYYEDESAPTGTCAVCVVGGERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYYYIAGFFL 168 (341)
Q Consensus 89 ~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~ 168 (341)
.+.+|..+.+.|.+.|.++..+..... . + .|...+- .+. ++ -...|++.+
T Consensus 12 ~~~~g~~v~~~l~~~G~~v~~Vnp~~~----~---i-~G~~~y~-------sl~--e~--------p~~iDlavv----- 61 (116)
T PF13380_consen 12 PGKFGYRVLRNLKAAGYEVYPVNPKGG----E---I-LGIKCYP-------SLA--EI--------PEPIDLAVV----- 61 (116)
T ss_dssp TTSHHHHHHHHHHHTT-EEEEESTTCS----E---E-TTEE-BS-------SGG--GC--------SST-SEEEE-----
T ss_pred CCChHHHHHHHHHhCCCEEEEECCCce----E---E-CcEEeec-------ccc--CC--------CCCCCEEEE-----
Confidence 367899999999998877766532211 0 0 2333321 111 11 235677777
Q ss_pred ccCHHHHHHHHHHHHhcCCe-EEEeCC
Q 019402 169 TVSPESIQMVAEHAAAKNKV-FMMNLS 194 (341)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~-v~~d~~ 194 (341)
..+++...++++.+.+.|++ +.+.++
T Consensus 62 ~~~~~~~~~~v~~~~~~g~~~v~~~~g 88 (116)
T PF13380_consen 62 CVPPDKVPEIVDEAAALGVKAVWLQPG 88 (116)
T ss_dssp -S-HHHHHHHHHHHHHHT-SEEEE-TT
T ss_pred EcCHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 46788999999999998877 455554
No 205
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=22.45 E-value=3.4e+02 Score=24.22 Aligned_cols=42 Identities=17% Similarity=0.348 Sum_probs=26.0
Q ss_pred hhhhcceEEEEeccccccCHHHHHHHHHHHHhcC-----CeEEEeCCcHHH
Q 019402 153 SIVEKAKYYYIAGFFLTVSPESIQMVAEHAAAKN-----KVFMMNLSAPFI 198 (341)
Q Consensus 153 ~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~d~~~~~~ 198 (341)
..+++.-+.+++ ++|+..+..+++.+.+.+ +-+++|.++...
T Consensus 19 ~~lED~Gy~cvD----NlP~~Ll~~l~~~~~~~~~~~~~~Ai~iD~R~~~~ 65 (284)
T PF03668_consen 19 RALEDLGYYCVD----NLPPSLLPQLIELLAQSNSKIEKVAIVIDIRSREF 65 (284)
T ss_pred HHHHhcCeeEEc----CCcHHHHHHHHHHHHhcCCCCceEEEEEeCCChHH
Confidence 456667777777 567777777776666322 226777776543
No 206
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=22.07 E-value=3.9e+02 Score=23.12 Aligned_cols=34 Identities=24% Similarity=0.344 Sum_probs=25.2
Q ss_pred CCCCcchhhHHHHHHHHh-----cCCCHHHHHHHHHHHH
Q 019402 290 DTNGAGDAFVGGFLSQLV-----QEKPVEDCVRTGCYAA 323 (341)
Q Consensus 290 dttGAGDaf~a~~~~~l~-----~g~~~~~a~~~A~~~a 323 (341)
.-+|+|-+|...|+.++. .|.+.+++.+++...-
T Consensus 168 a~~~~~pa~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~ 206 (267)
T PRK11880 168 AVSGSGPAYVFLFIEALADAGVKLGLPREQARKLAAQTV 206 (267)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 358999999988877654 5788888887766553
No 207
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=21.92 E-value=6.6e+02 Score=23.50 Aligned_cols=38 Identities=16% Similarity=0.043 Sum_probs=23.1
Q ss_pred cceEEEEeccc-cccCHHHHHHHHHHHHhcCCeEEEeCC
Q 019402 157 KAKYYYIAGFF-LTVSPESIQMVAEHAAAKNKVFMMNLS 194 (341)
Q Consensus 157 ~~~~v~i~~~~-~~~~~~~~~~~~~~~~~~~~~v~~d~~ 194 (341)
+.++|+++.-+ +....--+..+.+.+++.++.+++|-.
T Consensus 155 ~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a 193 (403)
T PRK07810 155 PTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNV 193 (403)
T ss_pred CceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECC
Confidence 45677765332 211122367777778888888888764
No 208
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=21.62 E-value=1.1e+02 Score=25.59 Aligned_cols=101 Identities=10% Similarity=0.057 Sum_probs=59.0
Q ss_pred hHhhhhcceEEEEeccccccCHHHHHHHHHHHHhcCCeEEEeCCcHHHHhh---hhHHHHhh-CCCCcEEEcCHHHHHHH
Q 019402 151 IWSIVEKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEF---FREPQEKA-LPYMDYVFGNETEARTF 226 (341)
Q Consensus 151 ~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~---~~~~~~~~-l~~~dil~~n~~E~~~l 226 (341)
..+.+.++|.|+++-.+-.+..+.+.++...+..... ...+..+ ..-.+++. -.+..++.++....+.+
T Consensus 9 ~~~~~~~~~aVcFDvDSTvi~eEgIdelA~~~G~~~~-------Va~~T~rAMng~~~F~eaL~~Rl~llqp~~~qv~~~ 81 (227)
T KOG1615|consen 9 LAKLWRSADAVCFDVDSTVIQEEGIDELAAYCGVGEA-------VAEVTRRAMNGEADFQEALAARLSLLQPLQVQVEQF 81 (227)
T ss_pred HHHHHHhcCeEEEecCcchhHHhhHHHHHHHhCchHH-------HHHHHHHHhCCCCcHHHHHHHHHHHhcccHHHHHHH
Confidence 3467889999999865545566777777766632110 0011000 00012222 23567888888887766
Q ss_pred Hhh-cCCCCCCHHHHHHHHhcCCCCCCCCccEEEEeeCC
Q 019402 227 AKV-HGWETDNVEEIALKISQWPKASGTHKRITVITQGA 264 (341)
Q Consensus 227 ~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~vvvt~G~ 264 (341)
... ...=...+++++++| +..|+...+++-|-
T Consensus 82 v~~~k~~lT~Gi~eLv~~L------~~~~~~v~liSGGF 114 (227)
T KOG1615|consen 82 VIKQKPTLTPGIRELVSRL------HARGTQVYLISGGF 114 (227)
T ss_pred HhcCCCccCCCHHHHHHHH------HHcCCeEEEEcCCh
Confidence 532 111135688899999 67788877777553
No 209
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=21.34 E-value=4.5e+02 Score=21.29 Aligned_cols=38 Identities=8% Similarity=-0.053 Sum_probs=26.7
Q ss_pred ceEEEEeccccccCHHHHHHHHHHHHhcCCeEEEeCCcH
Q 019402 158 AKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAP 196 (341)
Q Consensus 158 ~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~ 196 (341)
.+.+.++|-.+-+.++ +.++++.+++.|..+.+...+.
T Consensus 63 ~~~i~~sGGEPll~~~-l~~li~~~~~~g~~v~i~TNg~ 100 (191)
T TIGR02495 63 IDGVVITGGEPTLQAG-LPDFLRKVRELGFEVKLDTNGS 100 (191)
T ss_pred CCeEEEECCcccCcHh-HHHHHHHHHHCCCeEEEEeCCC
Confidence 3566777644545555 7888999999998877766553
No 210
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=21.29 E-value=7.1e+02 Score=23.62 Aligned_cols=38 Identities=11% Similarity=0.075 Sum_probs=25.4
Q ss_pred cceEEEEeccccc-cCHHHHHHHHHHHHhcCCeEEEeCC
Q 019402 157 KAKYYYIAGFFLT-VSPESIQMVAEHAAAKNKVFMMNLS 194 (341)
Q Consensus 157 ~~~~v~i~~~~~~-~~~~~~~~~~~~~~~~~~~v~~d~~ 194 (341)
+.++|++...... ....-+..+.+.+++.|+++++|-.
T Consensus 149 ~TklV~~e~~~np~g~v~Di~~I~~la~~~gi~livD~t 187 (433)
T PRK08134 149 NTRLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVDST 187 (433)
T ss_pred CCeEEEEECCCcccCcccCHHHHHHHHHHcCCEEEEECC
Confidence 5677777643321 1113367888888999999999975
No 211
>PRK13663 hypothetical protein; Provisional
Probab=21.07 E-value=4.6e+02 Score=24.85 Aligned_cols=113 Identities=12% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCeEEEeCCcHHHHhh-------------hhHHHHhhCCCCcEEE-cCHHHHH--HHHhhcCCC-CCCHH
Q 019402 176 QMVAEHAAAKNKVFMMNLSAPFICEF-------------FREPQEKALPYMDYVF-GNETEAR--TFAKVHGWE-TDNVE 238 (341)
Q Consensus 176 ~~~~~~~~~~~~~v~~d~~~~~~~~~-------------~~~~~~~~l~~~dil~-~n~~E~~--~l~~~~~~~-~~~~~ 238 (341)
.++.++..+.+-++++++++....+. .-..+.++-..+.|++ +|..+.+ .+-+..|.+ ..+.-
T Consensus 16 ~~I~eRi~~f~~KLYLEFGGKLfdD~HAsRVLPGF~pdsKi~mL~~lkD~~EIvi~I~A~DIe~nKiRgDlGItYd~dVL 95 (493)
T PRK13663 16 DHILERINQFDGKLYLEFGGKLFDDYHASRVLPGFEPDNKIKLLQELKDQVEIVIAINANDIERNKIRGDLGITYDQDVL 95 (493)
T ss_pred HHHHHHHHhcCCEEEEEecccccccccHhhcCCCCCcCHHHHHHHHhhccceEEEEEEhhhhhhccccccCCCchhHHHH
Q ss_pred HHHHHHhcCCCCCCCCccEEEEeeCC--------------CCEEEEeCCeEEEEecccCCCCcccCCCCcc
Q 019402 239 EIALKISQWPKASGTHKRITVITQGA--------------DPVVVAEDGKVKLFPVILLPKEKLVDTNGAG 295 (341)
Q Consensus 239 ~~~~~l~~~~~~~~~~~~~vvvt~G~--------------~G~~~~~~~~~~~v~~~~~~~~~vvdttGAG 295 (341)
.+...++. .+.-+..||||+-. .|.-+| ..+.++.+|...-.+|+.-|=|
T Consensus 96 RLiD~fr~----~gl~V~sVVITqy~~qp~a~~F~~rLe~~GIkvy---~Hy~i~GYP~dv~~IVSdeGyG 159 (493)
T PRK13663 96 RLIDDFRE----LGLYVGSVVITQYDGQPAADAFRNRLERLGIKVY---RHYPIKGYPTDVDHIVSDEGYG 159 (493)
T ss_pred HHHHHHHh----cCceeeeEEEEecCCChHHHHHHHHHHHCCCceE---EecCcCCCCCCCCceECcCCCC
No 212
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=21.06 E-value=6e+02 Score=22.71 Aligned_cols=76 Identities=11% Similarity=-0.032 Sum_probs=39.9
Q ss_pred HhhhhcceEEEEeccccccC-HHHHHHHHHHHHhcCCe---EEEeCCcH---HHHhhhhHHHHhhCCCCcEEE-cCHHHH
Q 019402 152 WSIVEKAKYYYIAGFFLTVS-PESIQMVAEHAAAKNKV---FMMNLSAP---FICEFFREPQEKALPYMDYVF-GNETEA 223 (341)
Q Consensus 152 ~~~~~~~~~v~i~~~~~~~~-~~~~~~~~~~~~~~~~~---v~~d~~~~---~~~~~~~~~~~~~l~~~dil~-~n~~E~ 223 (341)
.+.++.+|.+++....-... ......+.+.+++.+.. ++..|... .........+.++.+++|.++ ++.+.+
T Consensus 79 ~~~l~~~d~v~i~aglGGGTGSG~ap~ia~~a~e~g~~~~~vvt~Pf~~Eg~~~~~nA~~~l~~L~~~~d~~ividN~~L 158 (304)
T cd02201 79 KEALEGADMVFITAGMGGGTGTGAAPVIAKIAKEMGALTVAVVTKPFSFEGKKRMRQAEEGLEELRKHVDTLIVIPNDKL 158 (304)
T ss_pred HHHHhCCCEEEEeeccCCCcchhHHHHHHHHHHHcCCCEEEEEeCCccccchhHHHHHHHHHHHHHHhCCEEEEEecHHH
Confidence 36778899988864322112 23444466777777764 22222211 111113345667778888777 444444
Q ss_pred HHHH
Q 019402 224 RTFA 227 (341)
Q Consensus 224 ~~l~ 227 (341)
..++
T Consensus 159 ~~~~ 162 (304)
T cd02201 159 LEVV 162 (304)
T ss_pred HHhh
Confidence 4433
No 213
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=21.03 E-value=6.7e+02 Score=23.85 Aligned_cols=37 Identities=19% Similarity=0.189 Sum_probs=23.6
Q ss_pred ceEEEEeccccc-cCHHHHHHHHHHHHhcCCeEEEeCC
Q 019402 158 AKYYYIAGFFLT-VSPESIQMVAEHAAAKNKVFMMNLS 194 (341)
Q Consensus 158 ~~~v~i~~~~~~-~~~~~~~~~~~~~~~~~~~v~~d~~ 194 (341)
.+++++...... ....-+..+.+.+++.|+.+++|-.
T Consensus 156 tk~V~~e~~~Np~~~v~di~~I~~la~~~gi~livD~t 193 (437)
T PRK05613 156 TKAFFGETFANPQADVLDIPAVAEVAHRNQVPLIVDNT 193 (437)
T ss_pred CeEEEEECCCCCCCcccCHHHHHHHHHHcCCeEEEECC
Confidence 456666433211 1123467777888899999999986
No 214
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=20.97 E-value=5.1e+02 Score=24.20 Aligned_cols=38 Identities=13% Similarity=0.130 Sum_probs=23.6
Q ss_pred cceEEEEeccc-cccCHHHHHHHHHHHHhcCCeEEEeCC
Q 019402 157 KAKYYYIAGFF-LTVSPESIQMVAEHAAAKNKVFMMNLS 194 (341)
Q Consensus 157 ~~~~v~i~~~~-~~~~~~~~~~~~~~~~~~~~~v~~d~~ 194 (341)
+.++|+++.-+ +....--+..+.+.+++.++.+++|-.
T Consensus 149 ~tklV~ie~p~NPtg~v~dl~~I~~la~~~gi~livD~t 187 (398)
T PRK08249 149 GCDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVVDNT 187 (398)
T ss_pred CCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECC
Confidence 46778775332 111112256677778888998888875
No 215
>PF14252 DUF4347: Domain of unknown function (DUF4347)
Probab=20.96 E-value=3.7e+02 Score=21.69 Aligned_cols=64 Identities=11% Similarity=0.242 Sum_probs=38.6
Q ss_pred EEEeCCcHHHHhhhhHHHHhhCCCCcEEEcCHHHHHHHHhhcCCCCCCHHHHHHHHhcCCCCCCCCccEEEEeeCCCCEE
Q 019402 189 FMMNLSAPFICEFFREPQEKALPYMDYVFGNETEARTFAKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGADPVV 268 (341)
Q Consensus 189 v~~d~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~~ 268 (341)
+++|.+.+. ....+..+.+.+.++.++..+ +.++++.+.+..... --..-++.+|+.|++
T Consensus 3 v~iD~~v~d----~~~L~~~l~~~~~v~~ld~~~------------d~~~qI~~~L~~~~~----i~~lhivsHG~~G~l 62 (165)
T PF14252_consen 3 VFIDSRVED----YESLLAGLPPGVEVVILDPSR------------DGLEQIAQALAGYQN----IDALHIVSHGSPGAL 62 (165)
T ss_pred EEEeCCCCC----HHHHHhcCcCCCEEEEEeCCC------------chHHHHHHHHhcCCC----CceEEEEcCCCcceE
Confidence 566776554 223445566778888876542 345566666643211 134567889999988
Q ss_pred EEeC
Q 019402 269 VAED 272 (341)
Q Consensus 269 ~~~~ 272 (341)
..-+
T Consensus 63 ~LG~ 66 (165)
T PF14252_consen 63 QLGN 66 (165)
T ss_pred EECC
Confidence 8743
No 216
>PRK08114 cystathionine beta-lyase; Provisional
Probab=20.92 E-value=6e+02 Score=23.85 Aligned_cols=56 Identities=9% Similarity=0.112 Sum_probs=31.0
Q ss_pred CCceeecCchhHHHHHHHHHHhCCCCceEEEEeecCCchhHHHHHHHHhcCCceeEee
Q 019402 54 ENVEYIAGGATQNSIKVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSTAAGVNVKYYE 111 (341)
Q Consensus 54 ~~~~~~~GG~~~n~a~~l~~l~~lg~~v~li~~vG~D~~g~~i~~~l~~~gi~~~~~~ 111 (341)
........|.+...+..++ +++.|.++. ++.-.....-..+.+.+++.||++.++.
T Consensus 78 ~~a~~~~SGmaAi~~~~~~-ll~~GD~Vv-~~~~~Yg~t~~l~~~~l~~~Gi~v~~vd 133 (395)
T PRK08114 78 AGCALYPCGAAAVANAILA-FVEQGDHVL-MTGTAYEPTQDFCSKILSKLGVTTTWFD 133 (395)
T ss_pred CeEEEEhHHHHHHHHHHHH-HcCCCCEEE-EeCCCcHHHHHHHHHHHHhcCcEEEEEC
Confidence 3555677787777766665 456555433 3321211122334456788888877653
No 217
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=20.85 E-value=87 Score=25.44 Aligned_cols=68 Identities=12% Similarity=0.033 Sum_probs=36.0
Q ss_pred cceEEEEeccccccCHHHHHH---HHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCCCCcEEEcCHHHHH
Q 019402 157 KAKYYYIAGFFLTVSPESIQM---VAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEAR 224 (341)
Q Consensus 157 ~~~~v~i~~~~~~~~~~~~~~---~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~ 224 (341)
+.|++.+.......+...+.. +.+.++-..+..++|.............+.+.+.++|++++|.-+..
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~ADvIvlnK~D~~ 154 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFADVIVLNKIDLV 154 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-SEEEEE-GGGH
T ss_pred CcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhcCEEEEeccccC
Confidence 578888877653222222111 11111223344677885532223344567788999999999997643
No 218
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=20.70 E-value=6.6e+02 Score=23.02 Aligned_cols=38 Identities=13% Similarity=0.164 Sum_probs=27.0
Q ss_pred cceEEEEeccc-cccCHHHHHHHHHHHHhcCCeEEEeCC
Q 019402 157 KAKYYYIAGFF-LTVSPESIQMVAEHAAAKNKVFMMNLS 194 (341)
Q Consensus 157 ~~~~v~i~~~~-~~~~~~~~~~~~~~~~~~~~~v~~d~~ 194 (341)
+.+++++..-+ +..+...+.++.+.+++.++.++.|-.
T Consensus 136 ~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t 174 (366)
T PRK08247 136 NTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNT 174 (366)
T ss_pred CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECC
Confidence 46777774332 334556788888889999988888864
No 219
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=20.66 E-value=6.9e+02 Score=23.22 Aligned_cols=38 Identities=13% Similarity=0.134 Sum_probs=24.3
Q ss_pred cceEEEEeccc-cccCHHHHHHHHHHHHhcCCeEEEeCC
Q 019402 157 KAKYYYIAGFF-LTVSPESIQMVAEHAAAKNKVFMMNLS 194 (341)
Q Consensus 157 ~~~~v~i~~~~-~~~~~~~~~~~~~~~~~~~~~v~~d~~ 194 (341)
+.++|+++.-+ +....--+.++.+.+++.++.+++|-.
T Consensus 144 ~tklV~le~p~Np~G~v~dl~~I~~la~~~gi~livD~a 182 (391)
T TIGR01328 144 NTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNT 182 (391)
T ss_pred CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECC
Confidence 46777776432 111122366777888888999888875
No 220
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=20.54 E-value=6.8e+02 Score=23.10 Aligned_cols=38 Identities=16% Similarity=0.081 Sum_probs=22.7
Q ss_pred cceEEEEecccc-ccCHHHHHHHHHHHHhcCCeEEEeCC
Q 019402 157 KAKYYYIAGFFL-TVSPESIQMVAEHAAAKNKVFMMNLS 194 (341)
Q Consensus 157 ~~~~v~i~~~~~-~~~~~~~~~~~~~~~~~~~~v~~d~~ 194 (341)
+.++|+++.-+. .....-+.++.+.+++.|+.+++|-.
T Consensus 139 ~tklV~le~p~np~g~~~dl~~I~~la~~~gi~livD~a 177 (380)
T TIGR01325 139 NTKLVFVETPSNPLGELVDIAALAELAHAIGALLVVDNV 177 (380)
T ss_pred CceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECC
Confidence 356677653321 11122356677777888888888875
No 221
>PF14748 P5CR_dimer: Pyrroline-5-carboxylate reductase dimerisation; PDB: 2RCY_D 3TRI_A 2IZZ_B 2GR9_B 2GRA_B 2GER_C 1YQG_A 2AG8_A 3GT0_A 2AMF_E ....
Probab=20.29 E-value=1.8e+02 Score=21.44 Aligned_cols=34 Identities=24% Similarity=0.298 Sum_probs=25.0
Q ss_pred CCCCcchhhHHHHHHHHh-----cCCCHHHHHHHHHHHH
Q 019402 290 DTNGAGDAFVGGFLSQLV-----QEKPVEDCVRTGCYAA 323 (341)
Q Consensus 290 dttGAGDaf~a~~~~~l~-----~g~~~~~a~~~A~~~a 323 (341)
..+|+|-+|...|+-++. .|.+.++|-+++...-
T Consensus 11 alsGsgpA~~~~~~eal~~a~v~~Gl~~~~A~~lv~~t~ 49 (107)
T PF14748_consen 11 ALSGSGPAYFFLFIEALADAAVAQGLPREEARKLVAQTF 49 (107)
T ss_dssp HHCTTHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 358999999999988775 5788888888776543
No 222
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=20.07 E-value=4.1e+02 Score=24.69 Aligned_cols=81 Identities=20% Similarity=0.336 Sum_probs=47.7
Q ss_pred EEEeecCCchhHHHHHHHHhcCCceeEee-cCCCCcceEEEEEeCCeeceeecccccccCCcccCCCchhHhhhhcceEE
Q 019402 83 YIGCIGKDKFGEEMKKNSTAAGVNVKYYE-DESAPTGTCAVCVVGGERSLVANLSAANCYKSEHLKRPEIWSIVEKAKYY 161 (341)
Q Consensus 83 li~~vG~D~~g~~i~~~l~~~gi~~~~~~-~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 161 (341)
-||.+|+...|+++...-+..|+++..+. ..+.|.... .++.+... .+ +.....+....+|++
T Consensus 3 tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~v------a~~~i~~~--------~d--D~~al~ela~~~DVi 66 (375)
T COG0026 3 TVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQV------ADRVIVAA--------YD--DPEALRELAAKCDVI 66 (375)
T ss_pred eEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhc------ccceeecC--------CC--CHHHHHHHHhhCCEE
Confidence 47899999999999999999999987764 233322221 11221111 00 111233667788988
Q ss_pred EEeccccccCHHHHHHHHHH
Q 019402 162 YIAGFFLTVSPESIQMVAEH 181 (341)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~ 181 (341)
-..-. +++.+.+..+...
T Consensus 67 T~EfE--~V~~~aL~~l~~~ 84 (375)
T COG0026 67 TYEFE--NVPAEALEKLAAS 84 (375)
T ss_pred EEeec--cCCHHHHHHHHhh
Confidence 88643 3445555555443
No 223
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=20.02 E-value=2.6e+02 Score=21.04 Aligned_cols=65 Identities=18% Similarity=0.064 Sum_probs=38.1
Q ss_pred hcceEEEEeccccccCHHHHHHHHHHHHhcCCeEEEeCCcHHHHhhhhHHHHhhCCCCcEEEcCHHHHH
Q 019402 156 EKAKYYYIAGFFLTVSPESIQMVAEHAAAKNKVFMMNLSAPFICEFFREPQEKALPYMDYVFGNETEAR 224 (341)
Q Consensus 156 ~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~ 224 (341)
.+.|+|.++..+. +......+++.+|+.+....+-.+++.... ..+.+ .....+|+++..+-|..
T Consensus 38 ~~pdiv~~S~~~~--~~~~~~~~~~~ik~~~p~~~iv~GG~~~t~-~p~~~-~~~~~~D~vv~GEgE~~ 102 (127)
T cd02068 38 LKPDVVGISLMTS--AIYEALELAKIAKEVLPNVIVVVGGPHATF-FPEEI-LEEPGVDFVVIGEGEET 102 (127)
T ss_pred cCCCEEEEeeccc--cHHHHHHHHHHHHHHCCCCEEEECCcchhh-CHHHH-hcCCCCCEEEECCcHHH
Confidence 5889999987543 334677788888887633222233332111 12222 23467999998887743
No 224
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=20.01 E-value=1.3e+02 Score=26.16 Aligned_cols=22 Identities=23% Similarity=0.370 Sum_probs=15.7
Q ss_pred cCCchhHHHHHHHHhcCCceeE
Q 019402 88 GKDKFGEEMKKNSTAAGVNVKY 109 (341)
Q Consensus 88 G~D~~g~~i~~~l~~~gi~~~~ 109 (341)
|.-..|+.+.+.|.+.|+++..
T Consensus 9 gGT~egr~la~~L~~~g~~v~~ 30 (248)
T PRK08057 9 GGTSEARALARALAAAGVDIVL 30 (248)
T ss_pred echHHHHHHHHHHHhCCCeEEE
Confidence 3335688999999888876543
Done!