Query 019403
Match_columns 341
No_of_seqs 132 out of 1858
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 09:11:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019403.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019403hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 5.6E-47 1.2E-51 352.1 36.5 321 2-325 129-453 (455)
2 PRK10189 MATE family multidrug 100.0 6.7E-43 1.5E-47 327.5 36.3 316 2-319 143-466 (478)
3 PRK00187 multidrug efflux prot 100.0 2.2E-42 4.7E-47 323.8 37.7 315 2-318 121-447 (464)
4 PRK01766 multidrug efflux prot 100.0 1.1E-40 2.5E-45 312.6 37.4 315 3-319 125-446 (456)
5 PRK09575 vmrA multidrug efflux 100.0 1.2E-39 2.7E-44 304.6 35.9 309 2-314 125-435 (453)
6 PRK10367 DNA-damage-inducible 100.0 2.7E-39 5.8E-44 300.5 36.9 307 2-319 122-434 (441)
7 TIGR01695 mviN integral membra 100.0 7.3E-31 1.6E-35 249.4 36.0 304 3-315 118-428 (502)
8 KOG1347 Uncharacterized membra 100.0 2.5E-30 5.5E-35 239.1 21.6 333 2-335 140-472 (473)
9 TIGR02900 spore_V_B stage V sp 100.0 1.6E-27 3.5E-32 225.7 34.8 302 8-314 115-433 (488)
10 TIGR00797 matE putative efflux 100.0 1.3E-26 2.8E-31 209.6 27.9 233 3-237 106-341 (342)
11 COG0534 NorM Na+-driven multid 100.0 1.7E-26 3.6E-31 215.1 26.2 210 105-317 12-223 (455)
12 PRK15099 O-antigen translocase 100.0 4.9E-25 1.1E-29 204.5 33.7 292 9-313 116-410 (416)
13 PF03023 MVIN: MviN-like prote 100.0 2.7E-24 5.9E-29 200.4 38.0 304 3-315 92-403 (451)
14 PRK00187 multidrug efflux prot 99.9 1.2E-25 2.6E-30 210.8 26.5 207 105-315 5-215 (464)
15 PRK10367 DNA-damage-inducible 99.9 1.4E-25 3E-30 208.7 26.4 206 107-314 6-211 (441)
16 PRK10189 MATE family multidrug 99.9 4.3E-25 9.4E-30 207.3 26.3 205 107-314 26-236 (478)
17 PRK09575 vmrA multidrug efflux 99.9 3.7E-25 8E-30 207.1 21.3 207 106-315 8-215 (453)
18 PRK01766 multidrug efflux prot 99.9 3.3E-24 7.2E-29 201.3 25.4 210 104-316 6-219 (456)
19 COG0728 MviN Uncharacterized m 99.9 5.4E-22 1.2E-26 182.7 36.0 302 7-315 131-437 (518)
20 PRK10459 colanic acid exporter 99.9 1.5E-18 3.3E-23 164.6 34.0 293 8-314 111-404 (492)
21 TIGR00797 matE putative efflux 99.9 8.9E-20 1.9E-24 164.9 22.3 194 118-314 1-196 (342)
22 PF01554 MatE: MatE; InterPro 99.9 6.1E-22 1.3E-26 159.6 7.0 162 118-281 1-162 (162)
23 COG2244 RfbX Membrane protein 99.8 3.8E-17 8.2E-22 154.6 32.2 280 7-297 115-394 (480)
24 KOG1347 Uncharacterized membra 99.6 8.5E-14 1.8E-18 129.4 20.0 206 106-315 24-230 (473)
25 TIGR02900 spore_V_B stage V sp 99.6 8.2E-13 1.8E-17 125.3 21.8 195 113-314 2-203 (488)
26 TIGR01695 mviN integral membra 99.5 1.8E-11 3.9E-16 116.6 23.5 196 112-314 2-206 (502)
27 PRK15099 O-antigen translocase 99.4 2.5E-11 5.4E-16 112.8 18.7 191 113-314 4-196 (416)
28 PF01943 Polysacc_synt: Polysa 99.2 1.1E-08 2.3E-13 89.2 21.3 155 19-179 119-273 (273)
29 PF03023 MVIN: MviN-like prote 99.1 3.2E-09 7E-14 99.4 18.2 174 138-316 3-183 (451)
30 PF13440 Polysacc_synt_3: Poly 98.9 3.9E-07 8.3E-12 78.4 21.3 158 9-177 91-250 (251)
31 PF04506 Rft-1: Rft protein; 98.8 2.7E-06 5.9E-11 80.8 24.6 203 109-314 252-469 (549)
32 COG0728 MviN Uncharacterized m 98.7 3.9E-06 8.4E-11 78.5 22.3 206 105-315 6-216 (518)
33 PF14667 Polysacc_synt_C: Poly 98.7 2.5E-06 5.4E-11 67.0 18.4 79 12-92 2-80 (146)
34 KOG2864 Nuclear division RFT1 98.6 3.9E-05 8.6E-10 69.0 23.0 294 12-314 126-448 (530)
35 PF01943 Polysacc_synt: Polysa 98.4 0.00013 2.8E-09 63.3 21.1 186 114-314 3-190 (273)
36 PF14667 Polysacc_synt_C: Poly 98.3 8.5E-06 1.8E-10 64.0 10.0 79 234-315 2-80 (146)
37 PF07260 ANKH: Progressive ank 98.2 0.00071 1.5E-08 58.6 20.8 160 106-271 7-169 (345)
38 PRK10459 colanic acid exporter 98.2 0.00011 2.5E-09 69.9 17.9 180 111-308 6-187 (492)
39 PF13440 Polysacc_synt_3: Poly 98.1 0.00079 1.7E-08 57.7 20.1 163 133-313 8-171 (251)
40 COG2244 RfbX Membrane protein 97.4 0.018 3.9E-07 54.6 18.2 148 110-270 6-156 (480)
41 PF01554 MatE: MatE; InterPro 97.2 0.00013 2.9E-09 58.1 1.4 57 2-58 105-162 (162)
42 PF07260 ANKH: Progressive ank 96.8 0.15 3.2E-06 44.7 15.9 153 3-156 123-285 (345)
43 COG4267 Predicted membrane pro 89.9 15 0.00033 33.4 20.4 136 162-314 75-210 (467)
44 PF04506 Rft-1: Rft protein; 86.0 21 0.00045 34.7 13.1 84 8-92 384-470 (549)
45 PF05975 EcsB: Bacterial ABC t 72.2 82 0.0018 29.0 15.6 36 183-218 89-124 (386)
46 COG4267 Predicted membrane pro 67.7 1E+02 0.0022 28.3 24.2 269 19-307 141-434 (467)
47 PF04505 Dispanin: Interferon- 58.8 58 0.0012 22.5 6.9 34 171-204 40-73 (82)
48 PRK09757 PTS system N-acetylga 43.0 2.3E+02 0.0049 24.7 16.2 45 149-193 96-143 (267)
49 PF01595 DUF21: Domain of unkn 37.0 2.1E+02 0.0046 22.7 12.4 54 170-223 101-154 (183)
50 PF06422 PDR_CDR: CDR ABC tran 34.5 14 0.0003 26.9 0.1 28 287-314 48-75 (103)
51 COG0170 SEC59 Dolichol kinase 33.6 87 0.0019 26.2 4.7 22 161-182 119-140 (216)
52 KOG2234 Predicted UDP-galactos 32.8 3.8E+02 0.0082 24.3 21.4 63 76-142 53-118 (345)
53 PF06800 Sugar_transport: Suga 32.7 3.4E+02 0.0073 23.7 8.4 43 263-308 194-236 (269)
54 PRK09546 zntB zinc transporter 32.4 1.4E+02 0.0031 26.6 6.3 49 265-317 266-323 (324)
55 TIGR00822 EII-Sor PTS system, 31.8 3.5E+02 0.0075 23.6 17.0 44 149-192 95-141 (265)
56 COG0109 CyoE Polyprenyltransfe 31.6 3.7E+02 0.0081 23.9 9.0 153 5-185 15-174 (304)
57 TIGR00383 corA magnesium Mg(2+ 29.3 2.3E+02 0.005 25.1 7.1 57 258-317 253-317 (318)
58 PF01102 Glycophorin_A: Glycop 26.6 85 0.0018 23.6 3.1 26 291-316 67-92 (122)
59 PF01148 CTP_transf_1: Cytidyl 21.1 5E+02 0.011 21.8 8.6 25 158-182 132-156 (259)
60 PF01384 PHO4: Phosphate trans 20.7 6.2E+02 0.014 22.7 9.3 87 196-282 224-325 (326)
61 PRK11085 magnesium/nickel/coba 20.2 3.6E+02 0.0078 24.1 6.4 54 260-317 253-315 (316)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=5.6e-47 Score=352.07 Aligned_cols=321 Identities=26% Similarity=0.359 Sum_probs=303.1
Q ss_pred cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHH-hC-CCcchHHHHHHHHHH
Q 019403 2 LSFWDHAGKFALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILK-LG-WGLIGAAITLNLSWW 79 (341)
Q Consensus 2 ~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~~~~l~i~~-~~-~g~~gaalat~is~~ 79 (341)
.|+.+.|.+|++++.++.|+..++.++++.+|+.||+|.|++.++.++++|+++||+|+++ ++ ||+.|+|+||++++.
T Consensus 129 ~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~ 208 (455)
T COG0534 129 AEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMYILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARW 208 (455)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHH
Confidence 3589999999999999999999999999999999999999999999999999999999998 67 999999999999999
Q ss_pred HHHHHHHHHHHHhcc--CCcCCCCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 019403 80 LIVILQLLYIFITKS--DGAWSGFSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQ 157 (341)
Q Consensus 80 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~k~il~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~aa~~~~~~i~ 157 (341)
+.++.+++++++++. .....+..+++++.+|++++.|+|..++++.+...+...+.+++++|++ ++|+|+++.++.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~--~lAa~~i~~~i~ 286 (455)
T COG0534 209 IGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTV--ALAAYGIALRIA 286 (455)
T ss_pred HHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChH--HHHHHHHHHHHH
Confidence 999999999998742 2222334466789999999999999999999999999999999999976 999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHH
Q 019403 158 GWDAMIAIGFNAAISVRVSNELGAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILL 237 (341)
Q Consensus 158 ~~~~~i~~~~~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~~~i~ 237 (341)
++..++..|++++++++++|++|+||+|++++..+.+..+++.++...++.++.+++++.++|++|+|+.+.+.+++++.
T Consensus 287 ~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~ 366 (455)
T COG0534 287 SFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIA 366 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHHHhhcCcchhhHHHHHHHHHHhhhhHHhHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHhcCH
Q 019403 238 AITVLMNCLQPVLSGVAVGAGWQSLVAYINLGCYYIVGLPLGILLGFTFGFGAEGIWSGMIGGIGLQTLILIVITSITNW 317 (341)
Q Consensus 238 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~l~~~~ii~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~ 317 (341)
...+++++.+.+..+.+||.||++.++..++.+.|++.+|+.+++.... +|..|+|+++.+++.++.+...+++++.+|
T Consensus 367 ~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~ 445 (455)
T COG0534 367 ALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRW 445 (455)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999865 999999999999999999999999999998
Q ss_pred HHHHHHHH
Q 019403 318 RKEADEAA 325 (341)
Q Consensus 318 ~~~~~~~~ 325 (341)
+++..+.+
T Consensus 446 ~~~~~~~~ 453 (455)
T COG0534 446 RRKAVAAA 453 (455)
T ss_pred hhhhhhcc
Confidence 88665543
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=6.7e-43 Score=327.48 Aligned_cols=316 Identities=16% Similarity=0.177 Sum_probs=292.2
Q ss_pred cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHh----CCCcchHHHHHHHH
Q 019403 2 LSFWDHAGKFALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKL----GWGLIGAAITLNLS 77 (341)
Q Consensus 2 ~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~~~~l~i~~~----~~g~~gaalat~is 77 (341)
.|+.+.+.+|++++.++.|+..+...+.+++|+.||++.++..+++..++|+++|++++++. ++|+.|+++||.++
T Consensus 143 ~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is 222 (478)
T PRK10189 143 PEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPLLINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTIS 222 (478)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhHHHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999753 79999999999999
Q ss_pred HHHHHHHHHHHHHHh-c--cCCcCCCCC-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 019403 78 WWLIVILQLLYIFIT-K--SDGAWSGFS-WLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVC 153 (341)
Q Consensus 78 ~~~~~~~~~~~~~~~-~--~~~~~~~~~-~~~~~~~k~il~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~aa~~~~ 153 (341)
+.+.+++..++++++ + .+.++++.. +.+++.+|++++.|+|..++.........+.+.+++++|++ ++|+++++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~--~~Aa~~I~ 300 (478)
T PRK10189 223 RYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTS--VIAGNFIA 300 (478)
T ss_pred HHHHHHHHHHHHHhccCccceeeeccccccCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHH--HHHHHHHH
Confidence 999998877666543 2 122222211 23678899999999999999999998888888889999976 89999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHH
Q 019403 154 MNIQGWDAMIAIGFNAAISVRVSNELGAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKL 233 (341)
Q Consensus 154 ~~i~~~~~~i~~~~~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~ 233 (341)
.++.++..++..|+++|.++++||++|+||+|++|+..+.+.+++++.+...+++++.+++++.++|++|+|+.+.+..+
T Consensus 301 ~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~ 380 (478)
T PRK10189 301 FSIAALINLPGNALGSASTIITGTRLGKGQIAQAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKIL 380 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhhcCcchhhHHHHHHHHHHhhhhHHhHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHH
Q 019403 234 SILLAITVLMNCLQPVLSGVAVGAGWQSLVAYINLGCYYIVGLPLGILLGFTFGFGAEGIWSGMIGGIGLQTLILIVITS 313 (341)
Q Consensus 234 ~~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~l~~~~ii~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~ 313 (341)
+++.+...++++.+.+..+.+||.||++.+++.++.+.|++.+|+.+++...+++|+.|+|++..+++.+..++..++++
T Consensus 381 l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~ 460 (478)
T PRK10189 381 IWLNALFMPIWAASWVLPAGLKGARDARYAMWVSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMV 460 (478)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998878899999999999999999999999999
Q ss_pred hcCHHH
Q 019403 314 ITNWRK 319 (341)
Q Consensus 314 ~~~~~~ 319 (341)
+++|++
T Consensus 461 ~~~W~~ 466 (478)
T PRK10189 461 SGRWLW 466 (478)
T ss_pred cCcccc
Confidence 999988
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=2.2e-42 Score=323.75 Aligned_cols=315 Identities=23% Similarity=0.255 Sum_probs=285.6
Q ss_pred cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHh----CCCcchHHHHHHHH
Q 019403 2 LSFWDHAGKFALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKL----GWGLIGAAITLNLS 77 (341)
Q Consensus 2 ~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~~~~l~i~~~----~~g~~gaalat~is 77 (341)
.|+.+.+.+|++++.++.|+..+...+++++|+.||++.+++.++.+.++|+++|++|+++. ++|+.|+++||.++
T Consensus 121 ~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~ 200 (464)
T PRK00187 121 PQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMVISLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALV 200 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999753 59999999999999
Q ss_pred HHHHHHHHHHHHHHhc-c-CCcC-CCCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 019403 78 WWLIVILQLLYIFITK-S-DGAW-SGFSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCM 154 (341)
Q Consensus 78 ~~~~~~~~~~~~~~~~-~-~~~~-~~~~~~~~~~~k~il~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~aa~~~~~ 154 (341)
+.+..+.+.+++++++ . +.++ ++..+.+++.+|+++|.++|.+++++.+...+.+++.+++++|++ ++++++++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~--alAa~~i~~ 278 (464)
T PRK00187 201 SNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGST--QLAAHQIAL 278 (464)
T ss_pred HHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHH--HHHHHHHHH
Confidence 9998888777776542 1 1111 122244667899999999999999999999999999999999986 899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccC--cH---HHHHH
Q 019403 155 NIQGWDAMIAIGFNAAISVRVSNELGAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTN--SE---AVAAE 229 (341)
Q Consensus 155 ~i~~~~~~i~~~~~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~--~~---~~~~~ 229 (341)
++..+...+..|++++..+++||++|+||+|++++..+.+...+++.+++.++..+++++++.++|++ |+ |+.+.
T Consensus 279 ~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~ 358 (464)
T PRK00187 279 QIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQL 358 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999964 44 68889
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhhHHHHHHHHHHhhhhHHhHHHHhcCCCcchhhHHHHHHHHHHHHHHH
Q 019403 230 TTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVAYINLGCYYIVGLPLGILLGFTFGFGAEGIWSGMIGGIGLQTLILI 309 (341)
Q Consensus 230 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~l~~~~ii~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~ 309 (341)
+..++++.+++.++.+++.++.+++||.||++.++..++.+.|++++|++|++.+++++|+.|+|+++.+++.+..+...
T Consensus 359 ~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~ 438 (464)
T PRK00187 359 AVSLLAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALT 438 (464)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhHhccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998889999999999999999988776
Q ss_pred HHHHhcCHH
Q 019403 310 VITSITNWR 318 (341)
Q Consensus 310 ~~~~~~~~~ 318 (341)
.+++.++|+
T Consensus 439 ~~~~~~~~~ 447 (464)
T PRK00187 439 LAFEWKTAR 447 (464)
T ss_pred HHHHHHHHH
Confidence 666544433
No 4
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=1.1e-40 Score=312.60 Aligned_cols=315 Identities=21% Similarity=0.356 Sum_probs=290.0
Q ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHH----hCCCcchHHHHHHHHH
Q 019403 3 SFWDHAGKFALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILK----LGWGLIGAAITLNLSW 78 (341)
Q Consensus 3 ~~~~~a~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~~~~l~i~~----~~~g~~gaalat~is~ 78 (341)
|+.+.+.+|+++..++.|+..+...+++++|+.||++.+++.++++.++|+++|++++++ .++|+.|+++||.+++
T Consensus 125 ~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~ 204 (456)
T PRK01766 125 EVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMVIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVY 204 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHH
Confidence 567889999999999999999999999999999999999999999999999999999864 3689999999999999
Q ss_pred HHHHHHHHHHHHHhc-cC--CcCCCCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 019403 79 WLIVILQLLYIFITK-SD--GAWSGFSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMN 155 (341)
Q Consensus 79 ~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~k~il~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~aa~~~~~~ 155 (341)
++..++..+++++++ .+ +.+.++.+++++.+|++++.++|.++++..+...+.+++.+++++|++ ++++++++.+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~--~lAa~~i~~~ 282 (456)
T PRK01766 205 WVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTV--TVAAHQIALN 282 (456)
T ss_pred HHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChH--HHHHHHHHHH
Confidence 999999888887652 11 111222234667899999999999999999999999999999999976 8999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHH
Q 019403 156 IQGWDAMIAIGFNAAISVRVSNELGAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSI 235 (341)
Q Consensus 156 i~~~~~~i~~~~~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~~~ 235 (341)
+.+++.++..|++.+.++.+||++|+||+|++++..+.+.+++++++++.++..+.+++++.++|++||++.+.+..+++
T Consensus 283 i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~ 362 (456)
T PRK01766 283 FSSLLFMLPLSLAMALTIRVGFELGAGRTLDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLL 362 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHHHhhcCcchhhHHHHHHHHHHhhhhHHhHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHhc
Q 019403 236 LLAITVLMNCLQPVLSGVAVGAGWQSLVAYINLGCYYIVGLPLGILLGFTFGFGAEGIWSGMIGGIGLQTLILIVITSIT 315 (341)
Q Consensus 236 i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~l~~~~ii~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 315 (341)
+..+..++.+++.+..+++||.||++.++..++.+.|++++|.++++.+.+++|+.|+|+++.+++.+..++..+++++.
T Consensus 363 ~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~ 442 (456)
T PRK01766 363 FAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKL 442 (456)
T ss_pred HHHHHHHHHHHHHHHHhchhccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887789999999999999999999988888777
Q ss_pred CHHH
Q 019403 316 NWRK 319 (341)
Q Consensus 316 ~~~~ 319 (341)
+|+.
T Consensus 443 ~~~~ 446 (456)
T PRK01766 443 QRQP 446 (456)
T ss_pred HHHH
Confidence 6654
No 5
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=1.2e-39 Score=304.64 Aligned_cols=309 Identities=17% Similarity=0.178 Sum_probs=280.3
Q ss_pred cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Q 019403 2 LSFWDHAGKFALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLI 81 (341)
Q Consensus 2 ~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~~~~l~i~~~~~g~~gaalat~is~~~~ 81 (341)
.|+.+.+.+|+++..++.|+..+.....+++|+.||++.++..++...++|+++|+++++.+++|+.|+++||.+++++.
T Consensus 125 ~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~ 204 (453)
T PRK09575 125 GRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATGLMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVV 204 (453)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred HHHHHHHHHHhccCCcCC-CCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Q 019403 82 VILQLLYIFITKSDGAWS-GFSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWD 160 (341)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~k~il~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~aa~~~~~~i~~~~ 160 (341)
.++.++++++++.+.++. +..+.+++.+|++++.|.|..+++........+.+.+.+++|+++ ++++++++.++.++.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~-~lAa~~i~~~i~~~~ 283 (453)
T PRK09575 205 TVLGLGYFFSSRANIRLTLKELRFNWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSAL-TVGAYAIVGYLMVLY 283 (453)
T ss_pred HHHHHHHHHCCCceeEEeeccCCcCHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchH-HHHHHHHHHHHHHHH
Confidence 999888876553222221 112346678999999999999999999999999888999999632 799999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccC-cHHHHHHHHHHHHHHHH
Q 019403 161 AMIAIGFNAAISVRVSNELGAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTN-SEAVAAETTKLSILLAI 239 (341)
Q Consensus 161 ~~i~~~~~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~-~~~~~~~~~~~~~i~~~ 239 (341)
.++..|++++..+++||++|+||+|++++..+.++++++..+++.++.++.+++++.++|++ |||+.+.+..++++..+
T Consensus 284 ~~~~~gi~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~ 363 (453)
T PRK09575 284 YLVAEGIAEGMQPPVSYYFGARQYDNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLF 363 (453)
T ss_pred HHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999995 78999999999999999
Q ss_pred HHHHhhHHHHHHHHHhhcCcchhhHHHHHHHHHHhhhhHHhHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHh
Q 019403 240 TVLMNCLQPVLSGVAVGAGWQSLVAYINLGCYYIVGLPLGILLGFTFGFGAEGIWSGMIGGIGLQTLILIVITSI 314 (341)
Q Consensus 240 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~l~~~~ii~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 314 (341)
+.+++++..+..+++||.||++.++..++.+. ++++|..+++.. .+|+.|+|+++.+++.+..+....++++
T Consensus 364 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~v~ip~~~ll~~--~~G~~Gvw~a~~~~~~~~~~~~~~~~~~ 435 (453)
T PRK09575 364 AMFLDGFLVLASAYFMAVNQGGKALFISIGNM-LIQLPFLFILPK--WLGVDGVWLAMPLSNIALSLVVAPMLWR 435 (453)
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHhH-HHHHHHHHHHHH--HHCcchHhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998776 789999999875 3799999999999999988877665554
No 6
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=2.7e-39 Score=300.47 Aligned_cols=307 Identities=16% Similarity=0.159 Sum_probs=264.7
Q ss_pred cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Q 019403 2 LSFWDHAGKFALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLI 81 (341)
Q Consensus 2 ~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~~~~l~i~~~~~g~~gaalat~is~~~~ 81 (341)
.|+.+++.+|++++.++.|+..+..++++++|+.||++.|++.++++.++|+++|+++++++++|+.|+++||.+++.+.
T Consensus 122 ~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~ 201 (441)
T PRK10367 122 EAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVILLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYAT 201 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc-cCC-cCCCCCHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 019403 82 VILQLLYIFITK-SDG-AWSGFSWLA-FADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQG 158 (341)
Q Consensus 82 ~~~~~~~~~~~~-~~~-~~~~~~~~~-~~~~k~il~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~aa~~~~~~i~~ 158 (341)
+++..+++++++ .++ +.+.+ +++ ++.+|++++.|.|..+++..+...+.+.+.+++++|++ ++|+|+++.++.+
T Consensus 202 ~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G~~--alAa~~I~~~i~~ 278 (441)
T PRK10367 202 LLIGLLMVRKVLKLRGISLEML-KTAWRGNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSD--IIAVNAVLMTLLT 278 (441)
T ss_pred HHHHHHHHHHHHhhccccHHHh-hhhhHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHH
Confidence 988888777642 111 11111 222 24789999999999999999999999999999999976 8999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHH
Q 019403 159 WDAMIAIGFNAAISVRVSNELGAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLA 238 (341)
Q Consensus 159 ~~~~i~~~~~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~~~i~~ 238 (341)
+..++..|+++|.++++||++|+||+|++|+..+.+.+++.+.+.+.++.++.+++++.++|++|+|+.+.+..++++..
T Consensus 279 ~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~ 358 (441)
T PRK10367 279 FTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGIVALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQV 358 (441)
T ss_pred HHHHHHHhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHhhHHHHHHHHHhhcC---cchhhHHHHHHHHHHhhhhHHhHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHhc
Q 019403 239 ITVLMNCLQPVLSGVAVGAG---WQSLVAYINLGCYYIVGLPLGILLGFTFGFGAEGIWSGMIGGIGLQTLILIVITSIT 315 (341)
Q Consensus 239 ~~~~~~~~~~~~~~~l~~~g---~~~~~~~~~l~~~~ii~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 315 (341)
...+.........++++|.+ |++.++..++.+.|+..++. +++|..|+|++..+++.++++++..++++.
T Consensus 359 ~~~~~~~~~~~~~~~~~g~lrg~dt~~~~~~~~~~~~~~~~~~-------~~~g~~Gvw~a~~~~~~~~~i~~~~~~~~~ 431 (441)
T PRK10367 359 ILPLVGVWCYLLDGMFIGATRAAEMRNSMAVAAAGFALTLLTL-------PWLGNHGLWLALTVFLALRGLSLAAIWRRH 431 (441)
T ss_pred HHHHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHH-------HHcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76443334444444455555 59999999999886422211 257999999999999999999877665553
Q ss_pred CHHH
Q 019403 316 NWRK 319 (341)
Q Consensus 316 ~~~~ 319 (341)
|++
T Consensus 432 -~~~ 434 (441)
T PRK10367 432 -WRN 434 (441)
T ss_pred -Hhc
Confidence 643
No 7
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=100.00 E-value=7.3e-31 Score=249.43 Aligned_cols=304 Identities=15% Similarity=0.109 Sum_probs=268.4
Q ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHH--HHHHHHHHH
Q 019403 3 SFWDHAGKFALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAA--ITLNLSWWL 80 (341)
Q Consensus 3 ~~~~~a~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~~~~l~i~~~~~g~~gaa--lat~is~~~ 80 (341)
|..+.+.+|++++.++.|+..+....++++|+.||++.+++.++..++++++..+++ ..++|..|++ +++++++.+
T Consensus 118 ~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~i~~i~~~~~~--~~~~g~~~~~~~~~~~i~~~~ 195 (502)
T TIGR01695 118 ETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFSPILFNIGVILSLLFF--DWNYGQYSLALAIGVLIGGVA 195 (502)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHHHHHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHH
Confidence 566789999999999999999999999999999999999999999998887754443 4678999988 999999999
Q ss_pred HHHHHHHHHHHhccCCcCCCCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Q 019403 81 IVILQLLYIFITKSDGAWSGFSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWD 160 (341)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~aa~~~~~~i~~~~ 160 (341)
..++.+++.++++.+.+ +++ +.+++.+|++++.+.|..+++........++..+.+.+|.+ ++++|+.+.++.++.
T Consensus 196 ~~~~~~~~~~~~~~~~~-~~~-~~~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~--~v~~~~~a~~l~~~~ 271 (502)
T TIGR01695 196 QLLIQLPFLRKAGFLLK-PRF-NFRDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIG--SVSALYYANRIYQLP 271 (502)
T ss_pred HHHHHHHHHHHCCCccc-CcC-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--hHHHHHHHHHHHHHH
Confidence 98888777765532211 111 22456889999999999999999999999999888888876 889999999999887
Q ss_pred HH-HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccC----cHHHHHHHHHHHH
Q 019403 161 AM-IAIGFNAAISVRVSNELGAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTN----SEAVAAETTKLSI 235 (341)
Q Consensus 161 ~~-i~~~~~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~----~~~~~~~~~~~~~ 235 (341)
.. +..+++++..|.+|+++|+||.|+.++..+++.++...++.+.+++++.+++++.++|.+ |+|..+.+..+++
T Consensus 272 ~~~~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~ 351 (502)
T TIGR01695 272 LGIFGISLSTVLLPKLSRHASEGNWNELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILA 351 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 65 678999999999999999999999999999999999999999999999999999998865 5677888999999
Q ss_pred HHHHHHHHhhHHHHHHHHHhhcCcchhhHHHHHHHHHHhhhhHHhHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHhc
Q 019403 236 LLAITVLMNCLQPVLSGVAVGAGWQSLVAYINLGCYYIVGLPLGILLGFTFGFGAEGIWSGMIGGIGLQTLILIVITSIT 315 (341)
Q Consensus 236 i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~l~~~~ii~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 315 (341)
+++++.++.++...+.+.+++.||++.+++.++.+. ++++++++++.. .+|..|+|+++.+++.+..+...++.+|+
T Consensus 352 ~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~-~i~i~l~~~l~~--~~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 352 AYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVISV-VLNALLSLLLIF--PLGLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred HHHHHHHHHHHHHHHHHhhHhccCCccCHHHHHHHH-HHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999988 889999998875 47999999999999999998877777664
No 8
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.97 E-value=2.5e-30 Score=239.10 Aligned_cols=333 Identities=44% Similarity=0.756 Sum_probs=316.0
Q ss_pred cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Q 019403 2 LSFWDHAGKFALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLI 81 (341)
Q Consensus 2 ~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~~~~l~i~~~~~g~~gaalat~is~~~~ 81 (341)
.|+...+..|.++++++.+.+.....++.++|++++..+..+......++|+.+++++++..++|..|++++..+++++.
T Consensus 140 ~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~ 219 (473)
T KOG1347|consen 140 PDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVIGLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLN 219 (473)
T ss_pred hhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHH
Confidence 46888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCcCCCCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Q 019403 82 VILQLLYIFITKSDGAWSGFSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDA 161 (341)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~aa~~~~~~i~~~~~ 161 (341)
...+.+|.........|..++++ ++.+++.++++.|.+++...+.+.+.+.....+.++++..++++.++..++.....
T Consensus 220 ~~~l~~yi~~~~~~~~w~~~s~~-~~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~ 298 (473)
T KOG1347|consen 220 VRILLLYAVLSGCLAAWSGFSGE-FDSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHL 298 (473)
T ss_pred HHHHHHHheecCchhhhhhhhHh-hhhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999876656677777766 89999999999999999999999999999999999997778999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHH
Q 019403 162 MIAIGFNAAISVRVSNELGAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITV 241 (341)
Q Consensus 162 ~i~~~~~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~~~i~~~~~ 241 (341)
++..+++.+.++.+++.+|++|.+++|...+.+...++..+...+...+..++.+..+|++|+++.+...+..++++.+.
T Consensus 299 ~~~~~~~~a~strv~neLGag~p~~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~ 378 (473)
T KOG1347|consen 299 MIPGAFSAAVSTRVSNELGAGKPKRARVSAKVALQTSVAIGASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSI 378 (473)
T ss_pred HHhhhhhhhHHHHHHHHHcCCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHHHHHHHHhhcCcchhhHHHHHHHHHHhhhhHHhHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHhcCHHHHH
Q 019403 242 LMNCLQPVLSGVAVGAGWQSLVAYINLGCYYIVGLPLGILLGFTFGFGAEGIWSGMIGGIGLQTLILIVITSITNWRKEA 321 (341)
Q Consensus 242 ~~~~~~~~~~~~l~~~g~~~~~~~~~l~~~~ii~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (341)
+.++.+.+..+..+|.|+++...+.++...+++++|+...+.+..++|..|+|.++..+..+....+.....+.+|+++.
T Consensus 379 ~~~~~q~v~~Gva~g~g~q~~ga~vnl~~yyl~G~p~g~~l~~~~~~g~~glw~G~~~~~~~~~~~l~~~~~~tdW~~~~ 458 (473)
T KOG1347|consen 379 LLNALQAVLSGVARGSGWQQIGAVINLVAYYLVGAPVGLYLGFFTKFGVKGLWIGILLGFSVQTLVLAIVTARTDWKNQA 458 (473)
T ss_pred HhccchhhhhheEEeeccccceEEEeeeeeeEecCcceeEEEEEEecCceEEEeehHHHHHHHHHHHHHheeeccHHHHH
Confidence 99999999999999999999999999999999999999999988899999999999999888888888888889999999
Q ss_pred HHHHHHhcccCCCC
Q 019403 322 DEAASRVMKWGGST 335 (341)
Q Consensus 322 ~~~~~~~~~~~~~~ 335 (341)
++++++...++.++
T Consensus 459 ~~a~~~~~~~~~~~ 472 (473)
T KOG1347|consen 459 EKAFARIIASLVLV 472 (473)
T ss_pred HHHHHHHHhhccCC
Confidence 99999887766543
No 9
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.97 E-value=1.6e-27 Score=225.74 Aligned_cols=302 Identities=16% Similarity=0.129 Sum_probs=254.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHH-----hCCCcchHHHHHHHHHHHHH
Q 019403 8 AGKFALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILK-----LGWGLIGAAITLNLSWWLIV 82 (341)
Q Consensus 8 a~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~~~~l~i~~-----~~~g~~gaalat~is~~~~~ 82 (341)
...++++..++.|+..+....++++|++||++.++..+.++.++|++++..++.. .+.|+.|+++++.+++.+..
T Consensus 115 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~ 194 (488)
T TIGR02900 115 SLYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQIVRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSL 194 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 3467889999999999999999999999999999999999999999888776643 24678899999999999999
Q ss_pred HHHHHHHHHh-ccCCc--CCCCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCh-HHHHHHH----
Q 019403 83 ILQLLYIFIT-KSDGA--WSGFSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRL----PNA-LIAVDAI---- 150 (341)
Q Consensus 83 ~~~~~~~~~~-~~~~~--~~~~~~~~~~~~k~il~~~~p~~~~~~~~~~~~~~~~~~~~~~----g~~-~~~~aa~---- 150 (341)
+...++.+++ +.+++ +.+..+.+++.+|+++++++|..++++.......+|+.++++. |.. +.+.+.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~ 274 (488)
T TIGR02900 195 LYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLS 274 (488)
T ss_pred HHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 9877766554 21222 1222234567899999999999999999999999998888754 210 1122233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHH
Q 019403 151 SVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAET 230 (341)
Q Consensus 151 ~~~~~i~~~~~~i~~~~~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~ 230 (341)
+++.++.++...+..+++++..|.+++++|+||.|+.++..+++.+++...+.+..+.+..+++++..++.++++ +
T Consensus 275 ~~a~~i~~~~~~~~~~l~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~ 350 (488)
T TIGR02900 275 GMAMPLLTFPAVITSSLSTALVPDISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRPD----A 350 (488)
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----h
Confidence 355677788888889999999999999999999999999999999999999999999999999999988876544 5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhhHHHHHHHHHHhhhhHHhHHHHhcCCCcchhhHHHHHHHHHHHHHHHH
Q 019403 231 TKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVAYINLGCYYIVGLPLGILLGFTFGFGAEGIWSGMIGGIGLQTLILIV 310 (341)
Q Consensus 231 ~~~~~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~l~~~~ii~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~ 310 (341)
..+++++++..++..+.....+++++.||++.+++.++.+. ++++++++++...+++|+.|+++++.+++.+..+...+
T Consensus 351 ~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~ 429 (488)
T TIGR02900 351 GNFIRVLAPSFPFLYFSAPLQSILQGLGKQKVALRNSLIGA-IVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLA 429 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH-HHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHH
Confidence 77899999999999999999999999999999999999998 89999999887445789999999999999999998877
Q ss_pred HHHh
Q 019403 311 ITSI 314 (341)
Q Consensus 311 ~~~~ 314 (341)
..+|
T Consensus 430 ~~~~ 433 (488)
T TIGR02900 430 EIKK 433 (488)
T ss_pred HHHH
Confidence 7765
No 10
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.96 E-value=1.3e-26 Score=209.65 Aligned_cols=233 Identities=29% Similarity=0.440 Sum_probs=212.0
Q ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHH-HhC-CCcchHHHHHHHHHHH
Q 019403 3 SFWDHAGKFALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLIL-KLG-WGLIGAAITLNLSWWL 80 (341)
Q Consensus 3 ~~~~~a~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~~~~l~i~-~~~-~g~~gaalat~is~~~ 80 (341)
|..+++.+|++++.++.|+..+..+..+.+|+.||++.++..++++.++|+.++++++. .++ +|+.|+++++.+++++
T Consensus 106 ~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~~li~~~~g~~g~~g~~~~~~~~~~~ 185 (342)
T TIGR00797 106 EVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILNYILIFGKFGFLGIVGAALATVISYWL 185 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhHHHHhcCccccccHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999987 577 8999999999999999
Q ss_pred HHHHHHHHHHHh-ccCCcCCCCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 019403 81 IVILQLLYIFIT-KSDGAWSGFSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGW 159 (341)
Q Consensus 81 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~il~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~aa~~~~~~i~~~ 159 (341)
.+++.+++.+++ +.+.++++..+.+++..|+++++++|.+++++.......+++.+++++|.+ ++++|+++.++.++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~g~~--~v~~~~~a~~~~~~ 263 (342)
T TIGR00797 186 MFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALLALLVARLGSI--ALAAHQIALNVESL 263 (342)
T ss_pred HHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHHH
Confidence 999888777654 333332233345667899999999999999999999999999999999976 89999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHH
Q 019403 160 DAMIAIGFNAAISVRVSNELGAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILL 237 (341)
Q Consensus 160 ~~~i~~~~~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~~~i~ 237 (341)
...+..+++.+..|.+++++|+||.|+.++..++++++.+..+.+...++.++++++.++|++||++.+.+..++++.
T Consensus 264 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 264 LFMPAFGFGIAVSILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILFREFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988888764
No 11
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.96 E-value=1.7e-26 Score=215.09 Aligned_cols=210 Identities=22% Similarity=0.228 Sum_probs=201.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 019403 105 AFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNA 184 (341)
Q Consensus 105 ~~~~~k~il~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~aa~~~~~~i~~~~~~i~~~~~~a~~~~~s~~~g~~~~ 184 (341)
.++..|+++++++|.++.++.+.+.+.+|+.+++|++.+ ++++.++++++..+...+..+++.+..+.+||++|+||+
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~--alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~ 89 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAE--ALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDR 89 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH--HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCch
Confidence 446899999999999999999999999999999999965 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhhH
Q 019403 185 RAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVA 264 (341)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 264 (341)
+++++..+++...++++++++.+..+.+++++..++++++|+.+.+.+|+++..++.|+..+..+..+++|+.||++.++
T Consensus 90 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m 169 (455)
T COG0534 90 KKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPM 169 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhH
Confidence 99999999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHhHHHHh-cC-CCcchhhHHHHHHHHHHHHHHHHHHHhcCH
Q 019403 265 YINLGCYYIVGLPLGILLGFT-FG-FGAEGIWSGMIGGIGLQTLILIVITSITNW 317 (341)
Q Consensus 265 ~~~l~~~~ii~i~~~~~l~~~-~~-~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~ 317 (341)
+.++.+. ++|++++|++++. ++ +|+.|+++|+.+++.+.++....++.+++.
T Consensus 170 ~~~~~~~-~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~ 223 (455)
T COG0534 170 YILLLGN-LLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKR 223 (455)
T ss_pred HHHHHHH-HHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 9999999 9999999999998 56 999999999999999999998888887653
No 12
>PRK15099 O-antigen translocase; Provisional
Probab=99.95 E-value=4.9e-25 Score=204.48 Aligned_cols=292 Identities=10% Similarity=-0.023 Sum_probs=241.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHH
Q 019403 9 GKFALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLY 88 (341)
Q Consensus 9 ~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~~~~l~i~~~~~g~~gaalat~is~~~~~~~~~~~ 88 (341)
.++.++..+..++..+.....+.+|+.||++.++..++.+.++|+++ +++.... .|+.|+++||.+++.+..+..+++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~~~~i~l-~i~~~~~-~Gv~Ga~iat~i~~~i~~~~~~~~ 193 (416)
T PRK15099 116 QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGSLIGVAA-YYLCYRL-GGYEGALLGLALVPALVVLPAGIM 193 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-hcchHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777788889999999999999999999999999999887 4444332 399999999999999998887777
Q ss_pred HHHhcc-CCcCCCCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHH-HHHHHH
Q 019403 89 IFITKS-DGAWSGFSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITG-RLPNALIAVDAISVCMNIQGW-DAMIAI 165 (341)
Q Consensus 89 ~~~~~~-~~~~~~~~~~~~~~~k~il~~~~p~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~aa~~~~~~i~~~-~~~i~~ 165 (341)
+++++. +.+..++ +.+++.+|+++++|.|..+++....+....++.+++ ++|++ +++.|+.+.++.+. ...+..
T Consensus 194 ~~~~~~~~~~~~~~-~~~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~--~vg~y~~a~~i~~~~~~~~~~ 270 (416)
T PRK15099 194 LIRRGTIPLSYLKP-SWDNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWD--EVGIWQGVSSISDAYLQFITA 270 (416)
T ss_pred HHHccceehHhhhc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH--HhhHHHHHHHHHHHHHHHHHH
Confidence 765421 1111111 335678999999999999999999999999888885 88865 89999999999775 478999
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHhh
Q 019403 166 GFNAAISVRVSNELGAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNC 245 (341)
Q Consensus 166 ~~~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~~~i~~~~~~~~~ 245 (341)
+++++..|.++++ +|.||.++..++..+.....+.+.++..+++++++.+++.+|+ .+...++.++++.+.++..
T Consensus 271 ~~~~a~~P~~s~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~ 345 (416)
T PRK15099 271 SFSVYLLPTLSRL---TEKRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKV 345 (416)
T ss_pred HHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHH
Confidence 9999999999995 6789999999999999999999999999999999999998765 2236778889888888888
Q ss_pred HHHHHHHHHhhcCcchhhHHHHHHHHHHhhhhHHhHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHH
Q 019403 246 LQPVLSGVAVGAGWQSLVAYINLGCYYIVGLPLGILLGFTFGFGAEGIWSGMIGGIGLQTLILIVITS 313 (341)
Q Consensus 246 ~~~~~~~~l~~~g~~~~~~~~~l~~~~ii~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~ 313 (341)
.+..+...+-+.++++......+... ++++|+++++.. .+|..|+++++.+++.+..........
T Consensus 346 ~~~~~g~~~~~~~~~~~~~~~~~~~~-~l~i~l~~~li~--~~G~~G~a~a~~is~~~~~~~~~~~~~ 410 (416)
T PRK15099 346 GAYVFGYLVIAKASLRFYILAEVSQF-TLLTGFAHWLIP--LHGALGAAQAYMATYIVYFSLCCGVFL 410 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777666667777777777776666 889999999886 579999999999999999887654443
No 13
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.95 E-value=2.7e-24 Score=200.36 Aligned_cols=304 Identities=16% Similarity=0.126 Sum_probs=268.0
Q ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHhCCC---cchHHHHHHHHHH
Q 019403 3 SFWDHAGKFALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWG---LIGAAITLNLSWW 79 (341)
Q Consensus 3 ~~~~~a~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~~~~l~i~~~~~g---~~gaalat~is~~ 79 (341)
|..+.+.++.|++.|..++..+..++.+.+|+++|...|....+..++.-++.-.++. ...| +.+.++|..++.+
T Consensus 92 ~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~--~~~~~~~i~~la~g~~~g~~ 169 (451)
T PF03023_consen 92 ETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLS--NSWGQENIYALAWGVLIGAI 169 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHH--HhcCchHHHHHHHHHHHHHH
Confidence 6778999999999999999999999999999999999999988888877555443333 3455 8899999999999
Q ss_pred HHHHHHHHHHHHhccCCcCCCCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 019403 80 LIVILQLLYIFITKSDGAWSGFSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGW 159 (341)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~aa~~~~~~i~~~ 159 (341)
++.+..+.+.++...+.++ ++ +.+.+..|+.++...|..+.+....+...+++.+++.+++. .+++++.+.++.++
T Consensus 170 ~~~l~~l~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G--~vs~l~YA~~l~~l 245 (451)
T PF03023_consen 170 IQFLIQLPYLRRFGFRFRP-KF-DWRDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEG--SVSALNYAQRLYQL 245 (451)
T ss_pred HHHHHHHHHHHHCCCcccc-cC-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--HHHHHHHHHHHHHH
Confidence 9999988888776332111 11 11235799999999999999999999999999999999977 89999999999999
Q ss_pred HH-HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc----CcHHHHHHHHHHH
Q 019403 160 DA-MIAIGFNAAISVRVSNELGAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFT----NSEAVAAETTKLS 234 (341)
Q Consensus 160 ~~-~i~~~~~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~----~~~~~~~~~~~~~ 234 (341)
.. .+..++++...|..|+...+||.++.++..++.++..+.+.+|.++.+..+++++.+++. -|.|..+.....+
T Consensus 246 p~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l 325 (451)
T PF03023_consen 246 PLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASAL 325 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 87 567899999999999999999999999999999999999999999999999999987774 2567788899999
Q ss_pred HHHHHHHHHhhHHHHHHHHHhhcCcchhhHHHHHHHHHHhhhhHHhHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHh
Q 019403 235 ILLAITVLMNCLQPVLSGVAVGAGWQSLVAYINLGCYYIVGLPLGILLGFTFGFGAEGIWSGMIGGIGLQTLILIVITSI 314 (341)
Q Consensus 235 ~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~l~~~~ii~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 314 (341)
++++++.++.++...+...+++.||++.+++.++.+. ++++.+++++.. .+|..|+.+|+.++..+.++.....++|
T Consensus 326 ~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~~-~lni~l~~~l~~--~~g~~Glala~sl~~~i~~~~l~~~l~r 402 (451)
T PF03023_consen 326 RIYALGLPFYALNDLLSRVFYALGDTKTPVRISVISV-VLNIILSILLVP--FFGVAGLALATSLSAIISALLLYILLRR 402 (451)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHHH-HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 899999988876 6799999999999999999988887777
Q ss_pred c
Q 019403 315 T 315 (341)
Q Consensus 315 ~ 315 (341)
+
T Consensus 403 ~ 403 (451)
T PF03023_consen 403 R 403 (451)
T ss_pred H
Confidence 4
No 14
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.95 E-value=1.2e-25 Score=210.83 Aligned_cols=207 Identities=17% Similarity=0.116 Sum_probs=191.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 019403 105 AFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNA 184 (341)
Q Consensus 105 ~~~~~k~il~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~aa~~~~~~i~~~~~~i~~~~~~a~~~~~s~~~g~~~~ 184 (341)
+++++|+++++++|.+++++.+.+...+|+.+++++|++ ++++++++.++.++..++..|++++..+.+||++|+||+
T Consensus 5 ~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~--alAa~~i~~~i~~~~~~~~~gl~~~~~~i~aq~~Ga~~~ 82 (464)
T PRK00187 5 PTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPE--ALAGGGLGAASYSFVSIFCVGVIAAVGTLVAIRHGAGDI 82 (464)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence 457899999999999999999999999999999999976 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhhH
Q 019403 185 RAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVA 264 (341)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 264 (341)
|++++..+.+..++++++++.++..+ +.+++.++|+.|||+.+.+.+|++++.++.++..+...+++++|+.||++.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~ 161 (464)
T PRK00187 83 EGATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVM 161 (464)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 99999999999999999998887766 67889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHhHHHHhc----CCCcchhhHHHHHHHHHHHHHHHHHHHhc
Q 019403 265 YINLGCYYIVGLPLGILLGFTF----GFGAEGIWSGMIGGIGLQTLILIVITSIT 315 (341)
Q Consensus 265 ~~~l~~~~ii~i~~~~~l~~~~----~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 315 (341)
+.++.+. ++|+++++++++.+ ++|+.|+++|+.+++....+...++++++
T Consensus 162 ~~~~~~~-~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~ 215 (464)
T PRK00187 162 VISLAGA-VANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRH 215 (464)
T ss_pred HHHHHHH-HHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999 88999999988752 58999999999999888777665655543
No 15
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.95 E-value=1.4e-25 Score=208.69 Aligned_cols=206 Identities=14% Similarity=0.098 Sum_probs=194.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHH
Q 019403 107 ADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNARA 186 (341)
Q Consensus 107 ~~~k~il~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~aa~~~~~~i~~~~~~i~~~~~~a~~~~~s~~~g~~~~~~ 186 (341)
++.|+++++++|.+++++.+...+.+|+.+++++|+++ ++++.+++.++.++...+..+++.+..+.+||++|+||+|+
T Consensus 6 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~-alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~ 84 (441)
T PRK10367 6 SSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPV-YLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQA 84 (441)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 57899999999999999999999999999999995422 79999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhhHHH
Q 019403 187 AKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVAYI 266 (341)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 266 (341)
+++..++++..+++.+++..+....+.+++.++++.|||+.+.+.+|++++.++.|+..+..++.+++|+.||++.++..
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~~ 164 (441)
T PRK10367 85 LARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVIL 164 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHH
Confidence 99999999999999999999888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHhHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHh
Q 019403 267 NLGCYYIVGLPLGILLGFTFGFGAEGIWSGMIGGIGLQTLILIVITSI 314 (341)
Q Consensus 267 ~l~~~~ii~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 314 (341)
++++. ++|+++++++.+.+++|+.|+++|+.+++.+.++...+++.+
T Consensus 165 ~ii~~-~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~ 211 (441)
T PRK10367 165 LVVGN-ILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRK 211 (441)
T ss_pred HHHHH-HHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998 999999999999889999999999999999988876666654
No 16
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.94 E-value=4.3e-25 Score=207.31 Aligned_cols=205 Identities=16% Similarity=0.108 Sum_probs=192.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHH
Q 019403 107 ADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNARA 186 (341)
Q Consensus 107 ~~~k~il~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~aa~~~~~~i~~~~~~i~~~~~~a~~~~~s~~~g~~~~~~ 186 (341)
+..|+++++++|.+++++.+.....+|+.+++++|++ ++|+++++.++.++...+..|++++..+++||++|+||+|+
T Consensus 26 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~--alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~~~ 103 (478)
T PRK10189 26 LFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKE--AMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDRRR 103 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 4589999999999999999999999999999999976 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc--CcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhhH
Q 019403 187 AKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFT--NSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVA 264 (341)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 264 (341)
+++..+.+...++.++++.+++.+.+++++..+|+ .|+|+.+.+.+|++++.++.++..+..+..+++||.||++.++
T Consensus 104 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~ 183 (478)
T PRK10189 104 ARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPL 183 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhH
Confidence 99999999999999999999999999999999995 6999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHhHHHHh----cCCCcchhhHHHHHHHHHHHHHHHHHHHh
Q 019403 265 YINLGCYYIVGLPLGILLGFT----FGFGAEGIWSGMIGGIGLQTLILIVITSI 314 (341)
Q Consensus 265 ~~~l~~~~ii~i~~~~~l~~~----~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 314 (341)
..++.+. ++|+++++++.+. +++|+.|+++|+.+++.+..+...+++.+
T Consensus 184 ~i~~~~~-~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~ 236 (478)
T PRK10189 184 LINGGMN-ILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMI 236 (478)
T ss_pred HHHHHHH-HHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999877 9999999999875 37999999999999999988876555543
No 17
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.94 E-value=3.7e-25 Score=207.12 Aligned_cols=207 Identities=11% Similarity=0.040 Sum_probs=195.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 019403 106 FADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRL-PNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNA 184 (341)
Q Consensus 106 ~~~~k~il~~~~p~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~aa~~~~~~i~~~~~~i~~~~~~a~~~~~s~~~g~~~~ 184 (341)
++..|+++++++|.+++++.+.+...+|+.+++++ |++ ++++++++.++.++...+..+++.+..+++||++|+||+
T Consensus 8 ~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~--~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~~ 85 (453)
T PRK09575 8 QSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAE--GLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEGDL 85 (453)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHH--HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCH
Confidence 35789999999999999999999999999999996 755 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhhH
Q 019403 185 RAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVA 264 (341)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 264 (341)
|++++..+.+++++++.+++.+++.+.+++++..+|+.|+++.+.+.+|+++..++.++..+.....+++|+.||++.++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~ 165 (453)
T PRK09575 86 EKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLAT 165 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHhHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHhc
Q 019403 265 YINLGCYYIVGLPLGILLGFTFGFGAEGIWSGMIGGIGLQTLILIVITSIT 315 (341)
Q Consensus 265 ~~~l~~~~ii~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 315 (341)
..++.+. ++|+++++++.+.+++|+.|+++|+.+++.+..+...++++++
T Consensus 166 ~~~~~~~-~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~ 215 (453)
T PRK09575 166 GLMVIGA-LINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSS 215 (453)
T ss_pred HHHHHHH-HHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 9999998 9999999999988899999999999999999998876666543
No 18
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.93 E-value=3.3e-24 Score=201.25 Aligned_cols=210 Identities=14% Similarity=0.078 Sum_probs=195.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 019403 104 LAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGN 183 (341)
Q Consensus 104 ~~~~~~k~il~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~aa~~~~~~i~~~~~~i~~~~~~a~~~~~s~~~g~~~ 183 (341)
+.++.+|+++++++|.+++++...+...+|+.+++++|++ ++++++++.++..+...+..|++.+..+.+||++|++|
T Consensus 6 ~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~--~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~~ 83 (456)
T PRK01766 6 KYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSAT--DLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLNGAGR 83 (456)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3457899999999999999999999999999999999976 89999999999888888999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhh
Q 019403 184 ARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLV 263 (341)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 263 (341)
+|++++..+.++.+++++++++++..+++++++.++++.|+++.+.+.+|+++++++.++..+...+.+++++.||++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 163 (456)
T PRK01766 84 RERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPT 163 (456)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHhHHHHh----cCCCcchhhHHHHHHHHHHHHHHHHHHHhcC
Q 019403 264 AYINLGCYYIVGLPLGILLGFT----FGFGAEGIWSGMIGGIGLQTLILIVITSITN 316 (341)
Q Consensus 264 ~~~~l~~~~ii~i~~~~~l~~~----~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~ 316 (341)
++.++.+. ++++++++++++. +++|+.|+++++.+++.+..+...+++++++
T Consensus 164 ~~~~~i~~-ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~ 219 (456)
T PRK01766 164 MVIGFLGL-LINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRAR 219 (456)
T ss_pred HHHHHHHH-HHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 99999998 8999999998863 3689999999999999999988777666543
No 19
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.93 E-value=5.4e-22 Score=182.75 Aligned_cols=302 Identities=14% Similarity=0.067 Sum_probs=264.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHH
Q 019403 7 HAGKFALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQL 86 (341)
Q Consensus 7 ~a~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~~~~l~i~~~~~g~~gaalat~is~~~~~~~~~ 86 (341)
.|....+++.|.+++..+.....+.+++.+|...|.+..+..++.-+.....+.........+.++++.++-+.+.++.+
T Consensus 131 ~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~a~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~l 210 (518)
T COG0728 131 LAVLLTRILFPYLLFISLSALFGAILNSRNRFFIPAFAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQL 210 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechhhhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 58888899999999999999999999999999999999998888877555444433333467889999999999999999
Q ss_pred HHHHHhccCCcCCCCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HHHH
Q 019403 87 LYIFITKSDGAWSGFSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDA-MIAI 165 (341)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~k~il~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~aa~~~~~~i~~~~~-~i~~ 165 (341)
..++|.+...+++ +.. +.+.+|++++.-.|..+.....++...+++.+++.+.+. .++.+..+.+++++.. .+..
T Consensus 211 p~l~~~g~~~~p~-~~~-~~~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~G--sis~l~YA~rl~qlPlGifgv 286 (518)
T COG0728 211 PALRKAGLLIKPR-FGF-KDPGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEG--SVSWLYYADRLYQLPLGIFGV 286 (518)
T ss_pred HHHHHcccccCCC-CCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--cHHHHHHHHHHHHhhHHHHHH
Confidence 9998874222111 111 126899999999999999999999999999999999876 8999999999999998 6789
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccC----cHHHHHHHHHHHHHHHHHH
Q 019403 166 GFNAAISVRVSNELGAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTN----SEAVAAETTKLSILLAITV 241 (341)
Q Consensus 166 ~~~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~----~~~~~~~~~~~~~i~~~~~ 241 (341)
++++...|..|++..++|.++.++..+.+.+.++.+++|.++++.++++++.++... +++......+.+..++.+.
T Consensus 287 ai~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL 366 (518)
T COG0728 287 ALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGL 366 (518)
T ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999877732 4566788999999999999
Q ss_pred HHhhHHHHHHHHHhhcCcchhhHHHHHHHHHHhhhhHHhHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHhc
Q 019403 242 LMNCLQPVLSGVAVGAGWQSLVAYINLGCYYIVGLPLGILLGFTFGFGAEGIWSGMIGGIGLQTLILIVITSIT 315 (341)
Q Consensus 242 ~~~~~~~~~~~~l~~~g~~~~~~~~~l~~~~ii~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 315 (341)
++..+..++...+++.+|+|.|+++.+++. ++|+.+++.+.. .+|..|+.+++.++.++++.++++..+++
T Consensus 367 ~~~~L~~ll~~~FYAr~d~ktP~~i~ii~~-~~n~~l~~~l~~--~~~~~giala~s~a~~~~~~ll~~~l~k~ 437 (518)
T COG0728 367 IPFALVKLLSRVFYAREDTKTPMKIAIISL-VVNILLNLLLIP--PLGHVGLALATSLAAWVNALLLYYLLRKR 437 (518)
T ss_pred HHHHHHHHHHHHHHHccCCCcChHHHHHHH-HHHHHHHHHHHh--hccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999 999999966655 67899999999999999998887777764
No 20
>PRK10459 colanic acid exporter; Provisional
Probab=99.86 E-value=1.5e-18 Score=164.62 Aligned_cols=293 Identities=12% Similarity=0.049 Sum_probs=239.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHH
Q 019403 8 AGKFALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLL 87 (341)
Q Consensus 8 a~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~~~~l~i~~~~~g~~gaalat~is~~~~~~~~~~ 87 (341)
....+++..+..++..+....++.+|.+++.+..........++..++...+. ..+.|+.+.+++..++..+..+...+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~~~~i~~~~~~i~~~-~~~~g~~~l~~~~~~~~~~~~l~~~~ 189 (492)
T PRK10459 111 LAPLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEISAVVAGFTFAVVSA-FFWPGALAAILGYLVNSSVRTLLFGY 189 (492)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-HHCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888889999999999999999988888888777765554 35789999999999998887765433
Q ss_pred HHHHhccCCcCCCCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HHHHH
Q 019403 88 YIFITKSDGAWSGFSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDA-MIAIG 166 (341)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~k~il~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~aa~~~~~~i~~~~~-~i~~~ 166 (341)
.. +++.++++ +.+++..|++++++.|...+++...+....|..+++++.+++ +++.|+.+.++.+... .+...
T Consensus 190 ~~-~~~~~~~~----~~~~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~-~vG~Y~~A~~l~~~~~~~i~~~ 263 (492)
T PRK10459 190 FG-RKIYRPAL----HFSLASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAE-VLGGYNLAYNVATVPPMKINPI 263 (492)
T ss_pred Hh-cccCCccc----eecHHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchH-hhhhHHHHHHHHHHHHHHHHHH
Confidence 22 22222211 123467899999999999999999999999999888765433 8999999999988765 45566
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHhhH
Q 019403 167 FNAAISVRVSNELGAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCL 246 (341)
Q Consensus 167 ~~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~~~i~~~~~~~~~~ 246 (341)
++....|..++. ++|.++.++..+++.+....+++|+.+++..+++++..++.+++ .+.+...++++++..++...
T Consensus 264 i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~ 339 (492)
T PRK10459 264 ITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSV 339 (492)
T ss_pred HHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHH
Confidence 788889999885 57889999999999999999999999999999999877765543 34577899999999999999
Q ss_pred HHHHHHHHhhcCcchhhHHHHHHHHHHhhhhHHhHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHh
Q 019403 247 QPVLSGVAVGAGWQSLVAYINLGCYYIVGLPLGILLGFTFGFGAEGIWSGMIGGIGLQTLILIVITSI 314 (341)
Q Consensus 247 ~~~~~~~l~~~g~~~~~~~~~l~~~~ii~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 314 (341)
.......+++.||++.+++.++... ++.+|..+++.. .+|+.|+.+++.+++.+......+...+
T Consensus 340 ~~~~~~~l~a~g~~~~~~~~~~~~~-~~~i~~~~~~~~--~~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 340 GNPIGSLLLAKGRADLSFKWNVFKT-FLFIPAIVIGGQ--LAGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred HHHHHHHHHHcCccchhHHHHHHHH-HHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998887 778887777664 5799999999999999988877776633
No 21
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.86 E-value=8.9e-20 Score=164.95 Aligned_cols=194 Identities=20% Similarity=0.192 Sum_probs=181.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 019403 118 ASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNARAAKFSVLVVSIT 197 (341)
Q Consensus 118 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~aa~~~~~~i~~~~~~i~~~~~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~ 197 (341)
|.+++++...+...+++.+++++|++ ++++++.+.++..+...+..+++++..+.+++++|++|+|++++..+....+
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~ 78 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPV--DLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLL 78 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHH--HHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 67888999999999999999999965 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhhHHHHHHHHHHhhhh
Q 019403 198 AVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVAYINLGCYYIVGLP 277 (341)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~l~~~~ii~i~ 277 (341)
.++.+++.++..+.+++++..+++.|++..+++.++++++.++.++.++.....+++++.||++.+...++.+. +++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~-~~~i~ 157 (342)
T TIGR00797 79 ALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGN-VINII 157 (342)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH-HHHHH
Confidence 99999999999999999999999888888899999999999999999999999999999999999999999998 88999
Q ss_pred HHhHHHH-hcC-CCcchhhHHHHHHHHHHHHHHHHHHHh
Q 019403 278 LGILLGF-TFG-FGAEGIWSGMIGGIGLQTLILIVITSI 314 (341)
Q Consensus 278 ~~~~l~~-~~~-~g~~G~~~a~~~~~~~~~~~~~~~~~~ 314 (341)
.++++.. .++ +|+.|+++++.+++.+..+...++.++
T Consensus 158 ~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (342)
T TIGR00797 158 LNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKK 196 (342)
T ss_pred HhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9988876 567 889999999999999988887666654
No 22
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.86 E-value=6.1e-22 Score=159.55 Aligned_cols=162 Identities=24% Similarity=0.367 Sum_probs=158.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 019403 118 ASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNARAAKFSVLVVSIT 197 (341)
Q Consensus 118 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~aa~~~~~~i~~~~~~i~~~~~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~ 197 (341)
|.+++++.+.+.+.+++.+++++|++ ++++++++.++.++...+..|++++..+.+||++|++|+|++++..+.++.+
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~--~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~ 78 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPE--ALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLL 78 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTC--CCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHH--HHHHHHHHHHHHHHHhhhcccccccccceeeccccccccccccccccccccc
Confidence 88999999999999999999999876 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhhHHHHHHHHHHhhhh
Q 019403 198 AVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVAYINLGCYYIVGLP 277 (341)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~l~~~~ii~i~ 277 (341)
+++++++.++..+.+++++.++|++|+|+.+.+.+++++..++.++..+.....++++|.||++.++..++.+.|++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 158 (162)
T PF01554_consen 79 SLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIP 158 (162)
T ss_dssp HHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHH
T ss_pred chhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhH
Q 019403 278 LGIL 281 (341)
Q Consensus 278 ~~~~ 281 (341)
++|+
T Consensus 159 l~yl 162 (162)
T PF01554_consen 159 LAYL 162 (162)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9875
No 23
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.82 E-value=3.8e-17 Score=154.60 Aligned_cols=280 Identities=16% Similarity=0.108 Sum_probs=226.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHH
Q 019403 7 HAGKFALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQL 86 (341)
Q Consensus 7 ~a~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~~~~l~i~~~~~g~~gaalat~is~~~~~~~~~ 86 (341)
.....++....+.+........++.+|+.++++......+.+ ..-....+.+. .....+..++..++.........
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 190 (480)
T COG2244 115 VLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALSIVSS-IFLLAAVFALL---FAALGLAVWALVLGAVVSLLVLL 190 (480)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHH-HHHHHHHHHHH---HHhhhHHHHHHHHHHHHHHHHHH
Confidence 344557778899999999999999999999999999884444 11112222221 13445666777777777666666
Q ss_pred HHHHHhccCCcCCCCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 019403 87 LYIFITKSDGAWSGFSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIG 166 (341)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~k~il~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~aa~~~~~~i~~~~~~i~~~ 166 (341)
.+..+++.+.....+ +..++..|+.++.++|....+....+....|+.++++.-+++ +++.|+.+.++......+..+
T Consensus 191 ~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~-~vG~Y~~a~~i~~~~~~~~~~ 268 (480)
T COG2244 191 ILLGKKKRGLKRPIL-RFSLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPA-QVGIYSAAQRLVSLLLIVASA 268 (480)
T ss_pred HHHHHhhhhcccccc-CchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh-HheecccccHHHHHHHHHHHH
Confidence 666432111111111 224689999999999999999999999999999988875533 789999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHhhH
Q 019403 167 FNAAISVRVSNELGAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCL 246 (341)
Q Consensus 167 ~~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~~~i~~~~~~~~~~ 246 (341)
++.+..|..++.+.++|.++.++..+++.++....+.+..++...+++++..++.+++.. .+...+.++++..++..+
T Consensus 269 l~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~~--~~~~~l~il~~~~~~~~~ 346 (480)
T COG2244 269 LNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKYA--SAAPILQLLALAGLFLSL 346 (480)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCccc--chhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998887777655432 278899999999999999
Q ss_pred HHHHHHHHhhcCcchhhHHHHHHHHHHhhhhHHhHHHHhcCCCcchhhHHH
Q 019403 247 QPVLSGVAVGAGWQSLVAYINLGCYYIVGLPLGILLGFTFGFGAEGIWSGM 297 (341)
Q Consensus 247 ~~~~~~~l~~~g~~~~~~~~~l~~~~ii~i~~~~~l~~~~~~g~~G~~~a~ 297 (341)
.......+++.|+++..++.+..+. ++++.++++++. ..|..|+..++
T Consensus 347 ~~~~~~~l~~~g~~~~~~~~~~~~~-i~~~~l~~~li~--~~g~~g~~~a~ 394 (480)
T COG2244 347 VSLTSSLLQALGKQRLLLLISLISA-LLNLILNLLLIP--RFGLIGAAIAT 394 (480)
T ss_pred HHHHHHHHHHcCcchhhHHHHHHHH-HHHHHHHhHHHH--hhhhhhHHHHH
Confidence 9999999999999999999999999 889999998886 66888888888
No 24
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.61 E-value=8.5e-14 Score=129.43 Aligned_cols=206 Identities=14% Similarity=0.209 Sum_probs=192.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCh
Q 019403 106 FADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWD-AMIAIGFNAAISVRVSNELGAGNA 184 (341)
Q Consensus 106 ~~~~k~il~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~aa~~~~~~i~~~~-~~i~~~~~~a~~~~~s~~~g~~~~ 184 (341)
.++.|++++++.|..+....+.....+++.+++|+|+. ++++.++++...+.. ..+..|...+..++.+|++|++++
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~l--eLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~ 101 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNL--ELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKF 101 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccch--HHHHHHHHHHhhcccchHHhhccchhhhcchHhhhccccc
Confidence 68899999999999999999999999999999999986 788999998887774 578899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhhH
Q 019403 185 RAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVA 264 (341)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 264 (341)
+.......++.......+++.+.. +.+.+++...+++||++.+.+..|.+++.+..+.+.........+|++++.....
T Consensus 102 ~~lg~~lqrs~~~l~~~~~~~~~l-~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~ 180 (473)
T KOG1347|consen 102 TALGVYLQRSGIVLLVQGLPISLL-ILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLL 180 (473)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHH-HHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHH
Confidence 999999999999999999999854 5578999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHhHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHhc
Q 019403 265 YINLGCYYIVGLPLGILLGFTFGFGAEGIWSGMIGGIGLQTLILIVITSIT 315 (341)
Q Consensus 265 ~~~l~~~~ii~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 315 (341)
++..... ++++++++++...+++|..|+.++..+++.........+....
T Consensus 181 ~~~~~~~-~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~ 230 (473)
T KOG1347|consen 181 VIGLVAL-VLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLS 230 (473)
T ss_pred HHHHHHH-HHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheec
Confidence 9999999 9999999999999999999999999999999998877776553
No 25
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.55 E-value=8.2e-13 Score=125.31 Aligned_cols=195 Identities=17% Similarity=0.124 Sum_probs=163.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCChHHHHHH
Q 019403 113 VKLSLASAVMLCLEFWYLMLLVVITGR-LPNALIAVDAISVCMNIQGWDAMIA-IGFNAAISVRVSNELGAGNARAAKFS 190 (341)
Q Consensus 113 l~~~~p~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~aa~~~~~~i~~~~~~i~-~~~~~a~~~~~s~~~g~~~~~~~~~~ 190 (341)
.|-+.|..+++........+++.++++ +|++ +.++++.+.++..+...+. .|++++....+++..|++|+|+.++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~--~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~ 79 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAE--GVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKI 79 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHH--HhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHH
Confidence 467889999999999999999999998 5876 7899999999988887765 58999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhhHHHHHHH
Q 019403 191 VLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVAYINLGC 270 (341)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~l~~ 270 (341)
.+.++...+..+++.++..+++.+++...+.+|++. ..+++++.+..++..+.....+++|+.+|.+..+..+..+
T Consensus 80 ~~~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~ 155 (488)
T TIGR02900 80 LKVSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIE 155 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHH
Confidence 999999999999999999999999988776666653 3567888899999999999999999999999999999988
Q ss_pred HHHhhhhHHhHHHH-----hcCCCcchhhHHHHHHHHHHHHHHHHHHHh
Q 019403 271 YYIVGLPLGILLGF-----TFGFGAEGIWSGMIGGIGLQTLILIVITSI 314 (341)
Q Consensus 271 ~~ii~i~~~~~l~~-----~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 314 (341)
. ++++.....+.. ..++++.|..+++.++..+..+....++++
T Consensus 156 ~-i~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~ 203 (488)
T TIGR02900 156 Q-IVRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKR 203 (488)
T ss_pred H-HHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 666655444332 224567778888888888888776555444
No 26
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.47 E-value=1.8e-11 Score=116.56 Aligned_cols=196 Identities=13% Similarity=0.095 Sum_probs=152.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHH-HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCChHHH
Q 019403 112 FVKLSLASAVMLCLEFWYLMLLVVITGR-LPNALIAV-DAISVCMNIQGWDAMIAI--GFNAAISVRVSNELGAGNARAA 187 (341)
Q Consensus 112 il~~~~p~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~-aa~~~~~~i~~~~~~i~~--~~~~a~~~~~s~~~g~~~~~~~ 187 (341)
.+|.+.-....++.......++..++++ +|++ +. ++++.+.++.+....+.. |++++..+...++.+++ |++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~--~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~ 77 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAG--LTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEA 77 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--hHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHH
Confidence 3566666777888888889999999998 7887 67 799999999877765543 57777666666554332 677
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHhcccccccc--cCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhhH
Q 019403 188 KFSVLVVSITAVTIG-VCCTILVLATRYNFPFLF--TNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVA 264 (341)
Q Consensus 188 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~lf--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 264 (341)
++....+.....+.+ +...+..+++++++..++ +.|+|..+.+..|++++.++.++..+.....+++|+.||.+.++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 157 (502)
T TIGR01695 78 RRAFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPS 157 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHH
Confidence 777777666655444 445777888899999888 34677778999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHhHHHHhcCCCcchhh--HHHHHHHHHHHHHHHHHHHh
Q 019403 265 YINLGCYYIVGLPLGILLGFTFGFGAEGIW--SGMIGGIGLQTLILIVITSI 314 (341)
Q Consensus 265 ~~~l~~~~ii~i~~~~~l~~~~~~g~~G~~--~a~~~~~~~~~~~~~~~~~~ 314 (341)
+.++... ++++...+++ ..++|..|+. +++.++..+..+......++
T Consensus 158 ~~~i~~~-i~~i~~~~~~--~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~ 206 (502)
T TIGR01695 158 FSPILFN-IGVILSLLFF--DWNYGQYSLALAIGVLIGGVAQLLIQLPFLRK 206 (502)
T ss_pred HHHHHHH-HHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999887 5555433333 3478999988 99999999888876665554
No 27
>PRK15099 O-antigen translocase; Provisional
Probab=99.40 E-value=2.5e-11 Score=112.84 Aligned_cols=191 Identities=13% Similarity=0.036 Sum_probs=147.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHhcCCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCChHHHHHH
Q 019403 113 VKLSLASAVMLCLEFWYLML-LVVITGRLPNALIAVDAISVCMNIQGWDAMI-AIGFNAAISVRVSNELGAGNARAAKFS 190 (341)
Q Consensus 113 l~~~~p~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~aa~~~~~~i~~~~~~i-~~~~~~a~~~~~s~~~g~~~~~~~~~~ 190 (341)
.|.+...............+ ..+....+|++ +.+..+...++..+...+ ..|++++....++++ ++|+|+.++.
T Consensus 4 ~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~--~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~ 79 (416)
T PRK15099 4 AKASLWTAASTLVKIGAGLLVVKLLAVSFGPA--GVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAV 79 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcH--HHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHH
Confidence 34444444555555444444 44555666776 788888888888877665 778888888888887 6889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhhHHHHHHH
Q 019403 191 VLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVAYINLGC 270 (341)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~l~~ 270 (341)
.+.++...+..++++++..+++.+++...+.+|++ ...+..+..+..++..+.....+.+|+.||++.++...+.+
T Consensus 80 ~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~ 155 (416)
T PRK15099 80 VGTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTD----YQGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVG 155 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999887777665 24566666666777788889999999999999999999999
Q ss_pred HHHhhhhHHhHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHh
Q 019403 271 YYIVGLPLGILLGFTFGFGAEGIWSGMIGGIGLQTLILIVITSI 314 (341)
Q Consensus 271 ~~ii~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 314 (341)
. ++++.+ +++.... .|+.|+.+|+.+++.+..+...+.+++
T Consensus 156 ~-~~~i~l-~i~~~~~-~Gv~Ga~iat~i~~~i~~~~~~~~~~~ 196 (416)
T PRK15099 156 S-LIGVAA-YYLCYRL-GGYEGALLGLALVPALVVLPAGIMLIR 196 (416)
T ss_pred H-HHHHHH-HHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 888776 4444332 399999999999999988765555544
No 28
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.16 E-value=1.1e-08 Score=89.19 Aligned_cols=155 Identities=20% Similarity=0.229 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhccCCcC
Q 019403 19 LFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFITKSDGAW 98 (341)
Q Consensus 19 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~~~~l~i~~~~~g~~gaalat~is~~~~~~~~~~~~~~~~~~~~~ 98 (341)
.+..........++++.++.+.....++...++..+...+++.. +.+..+...+..++.++..++..++.+++. +
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--- 193 (273)
T PF01943_consen 119 LILSSLSSVFSGLLQGLQRFKYIAISNIISSLLSLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKL-R--- 193 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-c---
Confidence 35788889999999999999999999999999988877666643 344889999999999999888888877652 1
Q ss_pred CCCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019403 99 SGFSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNE 178 (341)
Q Consensus 99 ~~~~~~~~~~~k~il~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~aa~~~~~~i~~~~~~i~~~~~~a~~~~~s~~ 178 (341)
++..+.+++..|++++.+.|..++++...+....|..+++++.+++ +++.|+.+.++......+...+.+...|..++.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g~~-~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l 272 (273)
T PF01943_consen 194 PRFSFFSKKFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFLGPE-AVGIYSVAYRLASAISFLLSSISTVLFPRLSRL 272 (273)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2222334689999999999999999999999999999999987644 799999999999999999999999999999985
Q ss_pred h
Q 019403 179 L 179 (341)
Q Consensus 179 ~ 179 (341)
+
T Consensus 273 ~ 273 (273)
T PF01943_consen 273 W 273 (273)
T ss_pred C
Confidence 3
No 29
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.14 E-value=3.2e-09 Score=99.39 Aligned_cols=174 Identities=17% Similarity=0.078 Sum_probs=147.5
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 019403 138 GRLPNALIAVDAISVCMNIQGWDAMIA--IGFNAAISVRVSNELGAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYN 215 (341)
Q Consensus 138 ~~~g~~~~~~aa~~~~~~i~~~~~~i~--~~~~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (341)
..+|..+ +.++|.++.++-.++..+. .+++++..|..++.. +++.|+.++..+....+..+.+..+++..++++++
T Consensus 3 ~~fG~s~-~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~ 80 (451)
T PF03023_consen 3 YFFGASA-EADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPP 80 (451)
T ss_pred HHhcCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566644 6789999999999987543 468999999999999 89999999999999999999999999999999999
Q ss_pred cccccc--CcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhhHHHHHHHHHHhhhhHHhHHHHhcCCC---c
Q 019403 216 FPFLFT--NSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVAYINLGCYYIVGLPLGILLGFTFGFG---A 290 (341)
Q Consensus 216 i~~lf~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~l~~~~ii~i~~~~~l~~~~~~g---~ 290 (341)
+..++. .|++..+.+.+.++++.+..++.++..++.+++|+.+|...+....+... +..+....++ ....| +
T Consensus 81 iv~~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N-~~~I~~~~~~--~~~~~~~~i 157 (451)
T PF03023_consen 81 IVRLLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFN-LSIILSLLLL--SNSWGQENI 157 (451)
T ss_pred HHHHHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHH-HHHHHHHHHH--HHhcCchHH
Confidence 999884 47888999999999999999999999999999999999999999888776 4433333333 23456 8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhcC
Q 019403 291 EGIWSGMIGGIGLQTLILIVITSITN 316 (341)
Q Consensus 291 ~G~~~a~~~~~~~~~~~~~~~~~~~~ 316 (341)
.++.++..++.++..+......++..
T Consensus 158 ~~la~g~~~g~~~~~l~~l~~~~~~~ 183 (451)
T PF03023_consen 158 YALAWGVLIGAIIQFLIQLPYLRRFG 183 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 88999999999999988888777743
No 30
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=98.93 E-value=3.9e-07 Score=78.42 Aligned_cols=158 Identities=18% Similarity=0.199 Sum_probs=124.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHH
Q 019403 9 GKFALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLY 88 (341)
Q Consensus 9 ~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~~~~l~i~~~~~g~~gaalat~is~~~~~~~~~~~ 88 (341)
..++....+..++..+....++.+++++|.+.....+....++..+...++.. .+.+..+..++..++.++..++....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (251)
T PF13440_consen 91 FWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLY-LGLNLWSILLAFIISALLALLISFYL 169 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777888999999999999999999999999999999988544444443 34488889999999888887776553
Q ss_pred HHHhccCCcCCCCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHH-HHHHH
Q 019403 89 IFITKSDGAWSGFSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGR-LPNALIAVDAISVCMNIQGWDA-MIAIG 166 (341)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~k~il~~~~p~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~aa~~~~~~i~~~~~-~i~~~ 166 (341)
.+++ .+..+ +.+..| .++.+.|....++........+..+++. +|.+ +++.|+.+.++..... .+..+
T Consensus 170 ~~~~---~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~--~~g~y~~a~~l~~~~~~~~~~~ 239 (251)
T PF13440_consen 170 LRRK---LRLSF----KFSWRR-LLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPE--AVGIYSVAQRLASLPASLLSSA 239 (251)
T ss_pred hccc---cCCCc----hhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 3321 11111 222334 7999999999999999999999999999 7654 8999999999999888 89999
Q ss_pred HHHHHHHHHHH
Q 019403 167 FNAAISVRVSN 177 (341)
Q Consensus 167 ~~~a~~~~~s~ 177 (341)
+++...|.++|
T Consensus 240 i~~~~~p~lar 250 (251)
T PF13440_consen 240 ISSVFFPKLAR 250 (251)
T ss_pred HHHHHHHHHhC
Confidence 99999998886
No 31
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.83 E-value=2.7e-06 Score=80.80 Aligned_cols=203 Identities=11% Similarity=0.016 Sum_probs=159.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCh-
Q 019403 109 LWAFVKLSLASAVMLCLEFWYLMLLVVITGR--LPNALIAVDAISVCMNIQGWDA-MIAIGFNAAISVRVSNELGAGNA- 184 (341)
Q Consensus 109 ~k~il~~~~p~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~aa~~~~~~i~~~~~-~i~~~~~~a~~~~~s~~~g~~~~- 184 (341)
-++.++.+.....+++.-.+...-+..++.. +.+.+ +-+.|++++++-++.. .+...+-.+.....++...+++.
T Consensus 252 d~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~-~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~ 330 (549)
T PF04506_consen 252 DRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFE-DQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSK 330 (549)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHH-HhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCch
Confidence 3788999999988888888888888888888 55533 6789999999999885 77888999999999988765544
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh
Q 019403 185 --------RAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVG 256 (341)
Q Consensus 185 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~ 256 (341)
++..+.....++....+++++..+....++.+.+++.++.-....+...++.++...|+.+++.++.++.++
T Consensus 331 ~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s 410 (549)
T PF04506_consen 331 KKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFS 410 (549)
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 345666777788888888877777777778888877654433344688999999999999999999999999
Q ss_pred cCcchhhH---HHHHHHHHHhhhhHHhHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHh
Q 019403 257 AGWQSLVA---YINLGCYYIVGLPLGILLGFTFGFGAEGIWSGMIGGIGLQTLILIVITSI 314 (341)
Q Consensus 257 ~g~~~~~~---~~~l~~~~ii~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 314 (341)
..+.+.-. ..+.... ++.+..++++... ++|..|..+|..+.+.++.+....++++
T Consensus 411 ~a~~~~l~~~~~~m~~~S-~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~ 469 (549)
T PF04506_consen 411 VASESQLDRYNYWMVVFS-AIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRR 469 (549)
T ss_pred hCCHHHHHHHHHHHHHHH-HHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 97765433 3333344 5566678888866 7899999999999999999887777755
No 32
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=98.75 E-value=3.9e-06 Score=78.51 Aligned_cols=206 Identities=17% Similarity=0.106 Sum_probs=154.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCC
Q 019403 105 AFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIA--IGFNAAISVRVSNELGAG 182 (341)
Q Consensus 105 ~~~~~k~il~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~aa~~~~~~i~~~~~~i~--~~~~~a~~~~~s~~~g~~ 182 (341)
+.+.+|.....+.-..++... ...=+.+++..+|.+. ..+|+.++.++-+++.-+. .+++++..|...+...++
T Consensus 6 ~~sllks~~~vs~~Tl~SRi~---G~vRd~~iA~~fGa~~-~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~ 81 (518)
T COG0728 6 KMSLLKSLIIVSSATLLSRIL---GFVRDVLIAAAFGAGA-AADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKE 81 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhCCch-HHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcc
Confidence 345556666665555553332 3333677888888843 6789999999999997654 447899999999999888
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-ccccC--cHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCc
Q 019403 183 NARAAKFSVLVVSITAVTIGVCCTILVLATRYNFP-FLFTN--SEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGW 259 (341)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~lf~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~g~ 259 (341)
..|+.++......-....+.+...+...++++++. .++.. |++....+....+++.+..++.++.....+++++.++
T Consensus 82 ~~~~~~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~ 161 (518)
T COG0728 82 GEEAARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNR 161 (518)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCe
Confidence 78888888888876777777778888888888888 44443 3343346888889999999999999999999999999
Q ss_pred chhhHHHHHHHHHHhhhhHHhHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHhc
Q 019403 260 QSLVAYINLGCYYIVGLPLGILLGFTFGFGAEGIWSGMIGGIGLQTLILIVITSIT 315 (341)
Q Consensus 260 ~~~~~~~~l~~~~ii~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 315 (341)
-..+.+.-+... +..+.....+..+......+..++..++-+...+.....+++.
T Consensus 162 F~~~a~aPvl~N-v~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~ 216 (518)
T COG0728 162 FFIPAFAPVLLN-VSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKA 216 (518)
T ss_pred echhhhhHHHHH-HHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999888776 4444344444433222356777889999999999988888773
No 33
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.75 E-value=2.5e-06 Score=67.03 Aligned_cols=79 Identities=25% Similarity=0.330 Sum_probs=73.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 019403 12 ALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFI 91 (341)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~~~~l~i~~~~~g~~gaalat~is~~~~~~~~~~~~~~ 91 (341)
+++++++.++..+.....+.+++.||++.++.....+.++|++++++++ .++|..|+++|+.++..+..+...++.+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li--~~~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILI--PRFGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788899999999999999999999999999999999999999999996 57999999999999999999998888877
Q ss_pred h
Q 019403 92 T 92 (341)
Q Consensus 92 ~ 92 (341)
+
T Consensus 80 ~ 80 (146)
T PF14667_consen 80 K 80 (146)
T ss_pred H
Confidence 6
No 34
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.60 E-value=3.9e-05 Score=69.05 Aligned_cols=294 Identities=14% Similarity=0.066 Sum_probs=182.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHH-HhC-CCcchHHHHHHHHHHHHHHHHHHHH
Q 019403 12 ALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLIL-KLG-WGLIGAAITLNLSWWLIVILQLLYI 89 (341)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~~~~l~i~-~~~-~g~~gaalat~is~~~~~~~~~~~~ 89 (341)
+.+...+.....+...+.-..|..-+.+.-++..-...++.-++.+..+. +.+ .++..-|+|-......-.++..++.
T Consensus 126 I~~~~~S~vvELlsEp~~iv~Q~~~~~~~~~i~e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Y 205 (530)
T KOG2864|consen 126 IFIIGLSIVVELLSEPLYIVSQCGLKVQLRAIAEGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFY 205 (530)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34444555556666666677777777787788777777777555544433 333 3333444444443333333223333
Q ss_pred HHh-ccCCcC--------------CC--CCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCChHHHHHH
Q 019403 90 FIT-KSDGAW--------------SG--FSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGR---LPNALIAVDA 149 (341)
Q Consensus 90 ~~~-~~~~~~--------------~~--~~~~~~~~~k~il~~~~p~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~aa 149 (341)
.+. +.++.. ++ ....+++..|...++.... +.-.+...-+..+++. +.-+ +-+.
T Consensus 206 f~~~~s~~~~~~~~r~Sdllpk~~~n~~~~ffd~d~~~~~~s~~~Qs----~lKqlLTeGdkyvmt~~~~ls~~--~Qgv 279 (530)
T KOG2864|consen 206 FYIRGSIPETEPFSRFSDLLPKVSENERGIFFDNDLLKLTKSFTFQS----FLKQLLTEGDKYVMTFTELLSFG--DQGV 279 (530)
T ss_pred HHHcCCcccccchhhhhhhccCCCCCCccccccHHHHHHHHHHHHHH----HHHHHhhcccceeEeeeccCCcc--hhhH
Confidence 222 210000 00 1112334444444444433 3344444434433332 2222 3458
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcccccccccCcHH
Q 019403 150 ISVCMNIQGWDA-MIAIGFNAAISVRVSNELGAGNARAAKFSVLV---VSITAVTIGVCCTILVLATRYNFPFLFTNSEA 225 (341)
Q Consensus 150 ~~~~~~i~~~~~-~i~~~~~~a~~~~~s~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~ 225 (341)
|...++.-++.. .+...+-.......+|....++.|+.|+.... ..+....+++.+..+....++....+++++.-
T Consensus 280 Yd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kw 359 (530)
T KOG2864|consen 280 YDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKW 359 (530)
T ss_pred HHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccc
Confidence 999999988775 78888999999999998888888888776544 44555555555555555566777777766543
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhhH---HHHHHHHHHhhhhHHhHHHHhcCCCcchhhHHHHHHHH
Q 019403 226 VAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVA---YINLGCYYIVGLPLGILLGFTFGFGAEGIWSGMIGGIG 302 (341)
Q Consensus 226 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~---~~~l~~~~ii~i~~~~~l~~~~~~g~~G~~~a~~~~~~ 302 (341)
....+...++++++..++.+++.+..++..+.++.+..- ...+... ++.+..+|+++- .+|..|..+|..+.+.
T Consensus 360 ss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~~~n~~mlafS-viflilsylL~~--~~~~~GlIlANiiNm~ 436 (530)
T KOG2864|consen 360 SSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQIDKHNKFMLAFS-VIFLILSYLLIR--WFGLVGLILANIINMS 436 (530)
T ss_pred cCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHHhcccchhHHH-HHHHHHHHHHHH--HhchhHHHHHHHHHHH
Confidence 333467899999999999999999999999987665532 3344444 566788999987 4577999999988888
Q ss_pred HHHHHHHHHHHh
Q 019403 303 LQTLILIVITSI 314 (341)
Q Consensus 303 ~~~~~~~~~~~~ 314 (341)
++-+-...++++
T Consensus 437 lRIlys~~fI~~ 448 (530)
T KOG2864|consen 437 LRILYSLRFIRH 448 (530)
T ss_pred HHHHHHHHHHHH
Confidence 887766556555
No 35
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=98.39 E-value=0.00013 Score=63.28 Aligned_cols=186 Identities=17% Similarity=0.180 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhcCCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCChHHHHHHH
Q 019403 114 KLSLASAVMLCLEFWYLMLLVV-ITGRLPNALIAVDAISVCMNIQGWDAMI-AIGFNAAISVRVSNELGAGNARAAKFSV 191 (341)
Q Consensus 114 ~~~~p~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~aa~~~~~~i~~~~~~i-~~~~~~a~~~~~s~~~g~~~~~~~~~~~ 191 (341)
|.+.-....+........+... +...+|++ +.+.++....+..++..+ ..|++++..-..++...+ .++.++..
T Consensus 3 k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~--~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~ 78 (273)
T PF01943_consen 3 KNSLWLFLSNILSALIGFITIPILARYLGPE--EYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYF 78 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH--HhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHH
Confidence 3444444555555444444444 44455665 788999999998888765 678888887777776543 34444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhhHHHHHHHH
Q 019403 192 LVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVAYINLGCY 271 (341)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~l~~~ 271 (341)
.......++.++.......... .+. +++. ...+........++.........++++.++.+.....++...
T Consensus 79 ~~~~~~~~~~~~i~~~~~~~~~-----~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (273)
T PF01943_consen 79 SSVLFLLLIFSLIFLLILLIAS-----FFG-NPSL---SLILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISS 149 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HcC-CchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444333333323 333 3332 122222222222678888889999999999999999998887
Q ss_pred HHhhhhHHhHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHh
Q 019403 272 YIVGLPLGILLGFTFGFGAEGIWSGMIGGIGLQTLILIVITSI 314 (341)
Q Consensus 272 ~ii~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 314 (341)
+.......++... +.+..+...+..++..+..+......++
T Consensus 150 -~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (273)
T PF01943_consen 150 -LLSLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRR 190 (273)
T ss_pred -HHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555433 3458888888888888887776666654
No 36
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.28 E-value=8.5e-06 Score=63.99 Aligned_cols=79 Identities=18% Similarity=0.103 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhhcCcchhhHHHHHHHHHHhhhhHHhHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHH
Q 019403 234 SILLAITVLMNCLQPVLSGVAVGAGWQSLVAYINLGCYYIVGLPLGILLGFTFGFGAEGIWSGMIGGIGLQTLILIVITS 313 (341)
Q Consensus 234 ~~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~l~~~~ii~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~ 313 (341)
+++++++.++.++......++++.||++..++.++.+. ++++++++++.+ ++|..|+.+|+.+++........+..+
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~-~v~i~~~~~li~--~~G~~Gaa~a~~i~~~~~~~~~~~~~~ 78 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGA-IVNIILNYILIP--RFGIYGAAIATAISEIVSFILNLWYVR 78 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH-HHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999 999999999965 789999999999999999998888887
Q ss_pred hc
Q 019403 314 IT 315 (341)
Q Consensus 314 ~~ 315 (341)
|.
T Consensus 79 k~ 80 (146)
T PF14667_consen 79 KK 80 (146)
T ss_pred HH
Confidence 73
No 37
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.22 E-value=0.00071 Score=58.56 Aligned_cols=160 Identities=12% Similarity=0.128 Sum_probs=110.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 019403 106 FADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRL-PNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNA 184 (341)
Q Consensus 106 ~~~~k~il~~~~p~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~aa~~~~~~i~~~~~~i~~~~~~a~~~~~s~~~g~~~~ 184 (341)
...++++.++-.|..+++....+.-.+.+.-+++- .++.+.+|+|+++..+.-++..+...+-+....++.+ +.
T Consensus 7 ~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~s-----~r 81 (345)
T PF07260_consen 7 LTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVNS-----KR 81 (345)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhcc-----hh
Confidence 35788999999999999999988888877777763 4433469999999999999998888887776555443 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-Hhccc-ccccccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchh
Q 019403 185 RAAKFSVLVVSITAVTIGVCCTILVL-ATRYN-FPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSL 262 (341)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-i~~lf~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 262 (341)
+|- +........+.+..++..++.+ -+.+. +-.+++-||++.+.+...+.++.+..+++++...+.+++-=.+++..
T Consensus 82 srr-~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~i 160 (345)
T PF07260_consen 82 SRR-KAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWI 160 (345)
T ss_pred hhH-HHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeE
Confidence 221 1222222222222222122221 12222 35666789999999999999999999999999999999886666666
Q ss_pred hHHHHHHHH
Q 019403 263 VAYINLGCY 271 (341)
Q Consensus 263 ~~~~~l~~~ 271 (341)
....++...
T Consensus 161 V~~aSI~~v 169 (345)
T PF07260_consen 161 VGSASIADV 169 (345)
T ss_pred eehHHHHHH
Confidence 555555544
No 38
>PRK10459 colanic acid exporter; Provisional
Probab=98.21 E-value=0.00011 Score=69.87 Aligned_cols=180 Identities=14% Similarity=0.201 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCChHHHH
Q 019403 111 AFVKLSLASAVMLCLEFWYLMLLVVITGR-LPNALIAVDAISVCMNIQGWDAMIA-IGFNAAISVRVSNELGAGNARAAK 188 (341)
Q Consensus 111 ~il~~~~p~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~aa~~~~~~i~~~~~~i~-~~~~~a~~~~~s~~~g~~~~~~~~ 188 (341)
+..+-+....+.+........+...+.++ +|++ +.+.++.+..+..+...+. .|++++. .+. .+++.
T Consensus 6 ~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~--~~G~~~~~~~~~~~~~~~~~~Gl~~ai----i~~-~~~~~---- 74 (492)
T PRK10459 6 KTISGAKWTAISTVIIIGLQLVQLTVLARILDNH--QFGLLTMSLVIIGFADTLSDMGIGASI----IQR-QDISH---- 74 (492)
T ss_pred HHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHH--HccHHHHHHHHHHHHHHHHHcCHHHHH----Hhc-ccCCH----
Confidence 34455555566666665555566555555 5655 7788888888888776544 5676654 222 11222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhhHHHHH
Q 019403 189 FSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVAYINL 268 (341)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~l 268 (341)
+.....+...+..++...+..+.+.+++..+++ +|+ ....+++..+..++.++.....+.+++.++.+.......
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~ 149 (492)
T PRK10459 75 LQLSTLYWLNVGLGIVVFVLVFLLSPLIADFYH-NPE----LAPLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEI 149 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-Chh----hHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHH
Confidence 233445556666677777777777788877664 344 345677778888888888889999999999998888888
Q ss_pred HHHHHhhhhHHhHHHHhcCCCcchhhHHHHHHHHHHHHHH
Q 019403 269 GCYYIVGLPLGILLGFTFGFGAEGIWSGMIGGIGLQTLIL 308 (341)
Q Consensus 269 ~~~~ii~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~ 308 (341)
... ++.......+.. .+.|..+..++..++..+..+..
T Consensus 150 ~~~-i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~ 187 (492)
T PRK10459 150 SAV-VAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLF 187 (492)
T ss_pred HHH-HHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHH
Confidence 777 555555555543 46788888899888888776654
No 39
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=98.13 E-value=0.00079 Score=57.70 Aligned_cols=163 Identities=17% Similarity=0.259 Sum_probs=107.3
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019403 133 LVVITGRLPNALIAVDAISVCMNIQGWDAMI-AIGFNAAISVRVSNELGAGNARAAKFSVLVVSITAVTIGVCCTILVLA 211 (341)
Q Consensus 133 ~~~~~~~~g~~~~~~aa~~~~~~i~~~~~~i-~~~~~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (341)
...+...+|.+ +.+.|+....+..+...+ ..|+.+... + ..++|.++.++..+......++.++...+....
T Consensus 8 ~~~lar~l~~~--~~G~~~~~~s~~~~~~~~~~~g~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (251)
T PF13440_consen 8 LILLARYLGPE--DFGIYALIFSIVSILSIVASLGLRQSLV----R-SAARDKQDIRSLLRFSLLVSLLLAVILAILAIL 80 (251)
T ss_pred HHHHHHHCCHH--HhHHHHHHHHHHHHHHHHHHHHHHHHHH----H-hhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556665 788888888888877765 344444432 2 234667777777777766666655555544332
Q ss_pred hcccccccccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhhHHHHHHHHHHhhhhHHhHHHHhcCCCcc
Q 019403 212 TRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVAYINLGCYYIVGLPLGILLGFTFGFGAE 291 (341)
Q Consensus 212 ~~~~i~~lf~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~l~~~~ii~i~~~~~l~~~~~~g~~ 291 (341)
... .+ ++++ ...++.......++........+.+++.+|.+.......... +..+.....+.. .+.+..
T Consensus 81 ~~~----~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~ 149 (251)
T PF13440_consen 81 IAY----FF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRS-LLRLLLLVLLLY-LGLNLW 149 (251)
T ss_pred HHH----Hh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH-HHHHHHHHHHHH-HHhhHH
Confidence 323 33 3333 344566677788889999999999999999999999998888 555333333332 234788
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 019403 292 GIWSGMIGGIGLQTLILIVITS 313 (341)
Q Consensus 292 G~~~a~~~~~~~~~~~~~~~~~ 313 (341)
+..++..++..+..+......+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~ 171 (251)
T PF13440_consen 150 SILLAFIISALLALLISFYLLR 171 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 8889988888887776554433
No 40
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=97.39 E-value=0.018 Score=54.65 Aligned_cols=148 Identities=16% Similarity=0.154 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCChHHH
Q 019403 110 WAFVKLSLASAVMLCLEFWYLMLL-VVITGRLPNALIAVDAISVCMNIQGWDAMIA-IGFNAAISVRVSNELGAGNARAA 187 (341)
Q Consensus 110 k~il~~~~p~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~aa~~~~~~i~~~~~~i~-~~~~~a~~~~~s~~~g~~~~~~~ 187 (341)
++..|.+......++.......+. ..+...+|++ +.+.++.+..+..++..+. .|+..+..-.+++...+++++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~--~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~~ 83 (480)
T COG2244 6 KKLIKGALWLLLGTLISALLGLITIPLLARLLGPE--GFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLLL 83 (480)
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcc--cceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHHH
Confidence 344445555555555554444444 4555556765 7888999999999888766 88999998889988887777777
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhhHHH
Q 019403 188 KFS-VLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVAYI 266 (341)
Q Consensus 188 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 266 (341)
+.. ...........+.+........... +++ ....+++.....+.........+.+|+.++.+.....
T Consensus 84 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (480)
T COG2244 84 ILLSVLLLLLLALILLLLLLLIAYLLAPI-------DPV----LALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALS 152 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc-------Chh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Confidence 776 6666666666666555555544333 332 5667788899999999999999999999999999988
Q ss_pred HHHH
Q 019403 267 NLGC 270 (341)
Q Consensus 267 ~l~~ 270 (341)
.+..
T Consensus 153 ~~~~ 156 (480)
T COG2244 153 IVSS 156 (480)
T ss_pred HHHH
Confidence 5444
No 41
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=97.22 E-value=0.00013 Score=58.14 Aligned_cols=57 Identities=19% Similarity=0.275 Sum_probs=54.5
Q ss_pred cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHH-HHHHHHHHH
Q 019403 2 LSFWDHAGKFALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVL-VLHALFSWL 58 (341)
Q Consensus 2 ~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-~~ni~~~~l 58 (341)
.|+.+.+.+|+++..++.|+..+....++++|+.||++.+++.++.+. ++|++++|+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~yl 162 (162)
T PF01554_consen 105 PEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPLAYL 162 (162)
T ss_dssp TCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhHHhC
Confidence 368899999999999999999999999999999999999999999999 999999985
No 42
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=96.77 E-value=0.15 Score=44.65 Aligned_cols=153 Identities=17% Similarity=0.081 Sum_probs=81.9
Q ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCc-----chHHHHHHHH
Q 019403 3 SFWDHAGKFALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGL-----IGAAITLNLS 77 (341)
Q Consensus 3 ~~~~~a~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~~~~l~i~~~~~g~-----~gaalat~is 77 (341)
++.+.+++-..++..-=.+..+....+|++-=+.++...-..++...+..+++...++.. +... .+.......+
T Consensus 123 ~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~iV~~aSI~~v~~qvV~v~~ll~~-~l~~~~pllipil~~y~g~ 201 (345)
T PF07260_consen 123 SVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWIVGSASIADVIAQVVLVAILLSM-HLEPQDPLLIPILALYAGI 201 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeEeehHHHHHHHHHHHHHHHHHcc-ccCccccHHHHHHHHHHHH
Confidence 566677777777666666666666677666644454444444333333333333333321 1111 1221111111
Q ss_pred HHHHHHHHHHHHHHh-ccCCcCCCCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCChH---HHHHHHHH
Q 019403 78 WWLIVILQLLYIFIT-KSDGAWSGFSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGR-LPNAL---IAVDAISV 152 (341)
Q Consensus 78 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~il~~~~p~~~~~~~~~~~~~~~~~~~~~-~g~~~---~~~aa~~~ 152 (341)
..-..++.+-|..+- +.++...+..+.+...+++++++.+|.+.....+..+-.+.+.++++ +++.+ ++++..+.
T Consensus 202 ~vr~t~v~LGy~~~i~~~~p~~~~~~~~~~~tl~~~l~F~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~~avavl~~ 281 (345)
T PF07260_consen 202 AVRFTIVCLGYYQSIHDIIPQLSGLEKGDSATLQRMLKFWWPLALVLATQRISRPLVNLFVSRDLSGSQAATEAVAVLTA 281 (345)
T ss_pred HHHHHHHHHHHHHHHhhhccccCCcccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhhcc
Confidence 111122222222222 33333333334444689999999999999999999999999999999 55531 24444444
Q ss_pred HHHH
Q 019403 153 CMNI 156 (341)
Q Consensus 153 ~~~i 156 (341)
.++.
T Consensus 282 ~ypv 285 (345)
T PF07260_consen 282 TYPV 285 (345)
T ss_pred ccCC
Confidence 4443
No 43
>COG4267 Predicted membrane protein [Function unknown]
Probab=89.87 E-value=15 Score=33.35 Aligned_cols=136 Identities=19% Similarity=0.104 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHH
Q 019403 162 MIAIGFNAAISVRVSNELGAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITV 241 (341)
Q Consensus 162 ~i~~~~~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~~~i~~~~~ 241 (341)
.++.|+.-...-.+|.+.=+||.++....+.-........+..++....+. ++++ ...+-...+...
T Consensus 75 IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf~~--------~~~~-----si~yk~l~~~~F 141 (467)
T COG4267 75 IITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVFFV--------NNQY-----SIVYKILACALF 141 (467)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhh--------cCch-----hHHHHHHHHHHH
Confidence 345667777777888888889999988888877777776666666432221 1222 122222334444
Q ss_pred HHhhHHHHHHHHHhhcCcchhhHHHHHHHHHHhhhhHHhHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHh
Q 019403 242 LMNCLQPVLSGVAVGAGWQSLVAYINLGCYYIVGLPLGILLGFTFGFGAEGIWSGMIGGIGLQTLILIVITSI 314 (341)
Q Consensus 242 ~~~~~~~~~~~~l~~~g~~~~~~~~~l~~~~ii~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 314 (341)
...+..-.....+.+++|.+...+..+++. ++...+++++- +.+++|.-++.-++..+...+...++.+
T Consensus 142 V~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~-~~sv~La~~~~---~~~ie~lLL~~~IGi~~i~~l~~~~Ilr 210 (467)
T COG4267 142 VGMSLVWILMIFLSGLKKYKLIVLSFFIGY-VVSVLLARLFL---KSPIEGLLLTLDIGIFIILFLLNFYILR 210 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH---HhHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 555555566778889999998888887777 77777776665 4689999999999998888776666654
No 44
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=85.95 E-value=21 Score=34.67 Aligned_cols=84 Identities=17% Similarity=0.112 Sum_probs=67.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHcCchhHHH---HHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHH
Q 019403 8 AGKFALWMLPQLFAYALNFPIQKFLQAQRKVLVMA---WISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVIL 84 (341)
Q Consensus 8 a~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~---~~~~~~~~~ni~~~~l~i~~~~~g~~gaalat~is~~~~~~~ 84 (341)
+.+-+++....+|+..++.+..+++++....+--. .......++-+..+++++.. ++|..|..+|.++...+..+.
T Consensus 384 ~~~~l~~yc~yi~~la~NGi~EaF~~s~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~y 462 (549)
T PF04506_consen 384 APSLLRAYCYYIPFLAINGITEAFVFSVASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIY 462 (549)
T ss_pred chHHHHHHHHHHHHHHHccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHH
Confidence 45667888899999999999999999987765433 33444555556777888766 899999999999999999999
Q ss_pred HHHHHHHh
Q 019403 85 QLLYIFIT 92 (341)
Q Consensus 85 ~~~~~~~~ 92 (341)
...++++.
T Consensus 463 s~~fI~~~ 470 (549)
T PF04506_consen 463 SLRFIRRY 470 (549)
T ss_pred HHHHHHHH
Confidence 88888665
No 45
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=72.16 E-value=82 Score=29.04 Aligned_cols=36 Identities=8% Similarity=-0.012 Sum_probs=30.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 019403 183 NARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPF 218 (341)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 218 (341)
+.++.+++.+.+.+++++.......+.....-|+..
T Consensus 89 ~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~ 124 (386)
T PF05975_consen 89 KESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLM 124 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457799999999999999999988888887777765
No 46
>COG4267 Predicted membrane protein [Function unknown]
Probab=67.68 E-value=1e+02 Score=28.32 Aligned_cols=269 Identities=13% Similarity=0.087 Sum_probs=132.8
Q ss_pred HHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHh-ccC-C
Q 019403 19 LFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFIT-KSD-G 96 (341)
Q Consensus 19 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~~~~l~i~~~~~g~~gaalat~is~~~~~~~~~~~~~~~-~~~-~ 96 (341)
....+..=..-.++.+.+|.+.....-.++.++...+..++- .++..|.-++-.++..+..+....++.+. +.+ +
T Consensus 141 FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~---~~~ie~lLL~~~IGi~~i~~l~~~~Ilr~fk~~~~ 217 (467)
T COG4267 141 FVGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFL---KSPIEGLLLTLDIGIFIILFLLNFYILRYFKSSRR 217 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccc
Confidence 333444444556778888888888888888888887776654 45899999999999999999888888776 211 1
Q ss_pred cCCCCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH-------HHHHHHHHHHHHHHHHH-HH
Q 019403 97 AWSGFSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDA-------ISVCMNIQGWDAMIAIG-FN 168 (341)
Q Consensus 97 ~~~~~~~~~~~~~k~il~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~aa-------~~~~~~i~~~~~~i~~~-~~ 168 (341)
...++... ++..-+ ..+...+.++.--+++.+.=..++.+ .++. |.+..-...+...+... +.
T Consensus 218 i~FdFL~~-~~~y~S-------LllIg~FY~lgiwid~FifW~~~~~~-~Iag~~~~S~lYDvpiF~ayl~~iPs~vvF~ 288 (467)
T COG4267 218 IGFDFLLY-RRKYPS-------LLLIGFFYNLGIWIDNFIFWKVPTGI-EIAGPFFASPLYDVPIFYAYLFIIPSMVVFL 288 (467)
T ss_pred cceehhhh-hhcchH-------HHHHHHHHHhHhhhhheeeEecCCCC-EeecceecchhhhHHHHHHHHHhcchhheee
Confidence 11111111 111111 12233334444444443322222111 1211 11111111111111111 11
Q ss_pred HHHHHHH--------H-------HHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHH
Q 019403 169 AAISVRV--------S-------NELGAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKL 233 (341)
Q Consensus 169 ~a~~~~~--------s-------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~ 233 (341)
....+-. . ...-+++.++.....++.+.-..=+-...++.+..+++.+...++-|+.-.+....-
T Consensus 289 i~lET~F~~~Yk~~y~~I~~g~tl~~I~~~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~~~l~lF~vd 368 (467)
T COG4267 289 ISLETDFQENYKEYYQAIRGGGTLREIENNLKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSEYYLDLFYVD 368 (467)
T ss_pred eeeeehHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHH
Confidence 1111111 1 111223444555556666666666777888888999999999998776544444333
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhhcCcchhhHHHHHHHHHHhhhhHHhHHHHhcCCCcchhhHHHHHHHHHHHHH
Q 019403 234 SILLAITVLMNCLQPVLSGVAVGAGWQSLVAYINLGCYYIVGLPLGILLGFTFGFGAEGIWSGMIGGIGLQTLI 307 (341)
Q Consensus 234 ~~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~l~~~~ii~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~ 307 (341)
..-......+.++-++. -=..+-+.....+..-. +.|-.+.++.. ++|...-..+..++..+..+.
T Consensus 369 ~lg~s~~i~f~~ll~i~----lyfd~r~i~l~~t~~fl-i~N~ilT~i~l---~lgp~~~g~gff~a~fl~vlv 434 (467)
T COG4267 369 VLGVSCQIVFMSLLNIF----LYFDYRRIALELTALFL-ISNGILTFIFL---ELGPGYYGVGFFLASFLYVLV 434 (467)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHhhhhhhhhhhHHH-HHhHHHHHHHH---HhCccceehHHHHHHHHHHHH
Confidence 33333333333322222 11233333333333333 44555555444 344444444444444444443
No 47
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=58.82 E-value=58 Score=22.51 Aligned_cols=34 Identities=15% Similarity=0.111 Sum_probs=26.0
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHH
Q 019403 171 ISVRVSNELGAGNARAAKFSVLVVSITAVTIGVC 204 (341)
Q Consensus 171 ~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 204 (341)
...-+-.++.+||+|++++..+++-+++.+-.++
T Consensus 40 ~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~ 73 (82)
T PF04505_consen 40 YSSKVRSRYAAGDYEGARRASRKAKKWSIIAIII 73 (82)
T ss_pred echhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHH
Confidence 3445667888999999999999988887654443
No 48
>PRK09757 PTS system N-acetylgalactosamine-specific transporter subunit IIC; Provisional
Probab=42.95 E-value=2.3e+02 Score=24.71 Aligned_cols=45 Identities=7% Similarity=-0.074 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 019403 149 AISVCMNIQGWD---AMIAIGFNAAISVRVSNELGAGNARAAKFSVLV 193 (341)
Q Consensus 149 a~~~~~~i~~~~---~~i~~~~~~a~~~~~s~~~g~~~~~~~~~~~~~ 193 (341)
+.+++.++-.+. ..+...+........-+.-.++|+++.++....
T Consensus 96 AialAvPvgllg~~l~~~~~~~~~~~~~~adk~ae~gn~k~i~~~~~~ 143 (267)
T PRK09757 96 AIGLGLPFSLLMQYVILFFYSAFSLFMTKADKCAKEADTAAFSRLNWT 143 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhHHHHHH
Confidence 445555543333 333444555566666677777888877665443
No 49
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).
Probab=37.00 E-value=2.1e+02 Score=22.68 Aligned_cols=54 Identities=7% Similarity=-0.036 Sum_probs=43.4
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCc
Q 019403 170 AISVRVSNELGAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNS 223 (341)
Q Consensus 170 a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~ 223 (341)
...-.+-+.+|.++.++.........+....+.-|+...+....+.+.+.++.+
T Consensus 101 if~e~lPk~l~~~~~~~~~~~~a~~l~~~~~l~~P~~~~l~~i~~~~~~~~~~~ 154 (183)
T PF01595_consen 101 IFGEILPKALARRHPEKIALRLAPLLRVLMILLYPLVWLLSFISNKILKLFGIE 154 (183)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 444566788888888998888888888888888888888888888888887654
No 50
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=34.54 E-value=14 Score=26.85 Aligned_cols=28 Identities=14% Similarity=0.001 Sum_probs=17.8
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHh
Q 019403 287 GFGAEGIWSGMIGGIGLQTLILIVITSI 314 (341)
Q Consensus 287 ~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 314 (341)
.|=-.|+.++..+..++..++..-++..
T Consensus 48 ~WRN~GIli~f~i~f~~~~~~~~e~~~~ 75 (103)
T PF06422_consen 48 RWRNFGILIAFWIFFIVLTLLATEFIKF 75 (103)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445677777777777766665555544
No 51
>COG0170 SEC59 Dolichol kinase [Lipid metabolism]
Probab=33.56 E-value=87 Score=26.24 Aligned_cols=22 Identities=5% Similarity=0.329 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC
Q 019403 161 AMIAIGFNAAISVRVSNELGAG 182 (341)
Q Consensus 161 ~~i~~~~~~a~~~~~s~~~g~~ 182 (341)
.....++|+++.+++++.+|++
T Consensus 119 ~I~~l~~GD~lAsiiG~~~G~~ 140 (216)
T COG0170 119 GILVLALGDGLASIIGKRYGRH 140 (216)
T ss_pred HHHHHHHhhHHHHHhCcccCcc
Confidence 4567889999999999999985
No 52
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=32.80 E-value=3.8e+02 Score=24.30 Aligned_cols=63 Identities=14% Similarity=0.116 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHh-cc--CCcCCCCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 019403 76 LSWWLIVILQLLYIFIT-KS--DGAWSGFSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPN 142 (341)
Q Consensus 76 is~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~k~il~~~~p~~~~~~~~~~~~~~~~~~~~~~g~ 142 (341)
.+.++-.++......++ +. ++..+..++..+...++.+|.++|..+ ..+.+++..+-.+++..
T Consensus 53 ~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~vPa~i----YalqNnl~yval~~lda 118 (345)
T KOG2234|consen 53 LTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVSVPALI----YALQNNLQYVALSNLDA 118 (345)
T ss_pred HHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHHHHHHH----HHHhhhHHHHHHhcCCc
Confidence 44444444444444433 11 222233444556677899999999876 44445555566666554
No 53
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=32.69 E-value=3.4e+02 Score=23.69 Aligned_cols=43 Identities=12% Similarity=-0.062 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHhhhhHHhHHHHhcCCCcchhhHHHHHHHHHHHHHH
Q 019403 263 VAYINLGCYYIVGLPLGILLGFTFGFGAEGIWSGMIGGIGLQTLIL 308 (341)
Q Consensus 263 ~~~~~l~~~~ii~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~ 308 (341)
..+.++.+..+..+.-...+. ..+..|+..|..+++.-..+-.
T Consensus 194 ~~~~nil~G~~w~ignl~~~i---s~~~~G~a~af~lSQ~~vvISt 236 (269)
T PF06800_consen 194 KSWKNILTGLIWGIGNLFYLI---SAQKNGVATAFTLSQLGVVIST 236 (269)
T ss_pred chHHhhHHHHHHHHHHHHHHH---hHHhccchhhhhHHhHHHHHHH
Confidence 345555555343332222221 3457899999999996655443
No 54
>PRK09546 zntB zinc transporter; Reviewed
Probab=32.43 E-value=1.4e+02 Score=26.62 Aligned_cols=49 Identities=18% Similarity=0.134 Sum_probs=25.0
Q ss_pred HHHHHHHHHhhhhHHhHHHHhcCCCcc---------hhhHHHHHHHHHHHHHHHHHHHhcCH
Q 019403 265 YINLGCYYIVGLPLGILLGFTFGFGAE---------GIWSGMIGGIGLQTLILIVITSITNW 317 (341)
Q Consensus 265 ~~~l~~~~ii~i~~~~~l~~~~~~g~~---------G~~~a~~~~~~~~~~~~~~~~~~~~~ 317 (341)
..++++. +.+|+.++.++. +|+.. |-++...+ .++.++..++++++++|
T Consensus 266 ~Ltilt~--IflPlT~IaGiy-GMNf~~mPel~~~~gy~~~l~i-m~~i~~~~~~~fkrk~W 323 (324)
T PRK09546 266 TMSLMAM--VFLPTTFLTGLF-GVNLGGIPGGGWPFGFSIFCLL-LVVLIGGVAWWLKRSKW 323 (324)
T ss_pred HHHHHHH--HHHHHHHHHhhh-ccccCCCCCcCCcchHHHHHHH-HHHHHHHHHHHHHhccc
Confidence 4455554 456777776542 33332 33333333 33344445667777776
No 55
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=31.80 E-value=3.5e+02 Score=23.56 Aligned_cols=44 Identities=7% Similarity=0.037 Sum_probs=24.8
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 019403 149 AISVCMNIQGW---DAMIAIGFNAAISVRVSNELGAGNARAAKFSVL 192 (341)
Q Consensus 149 a~~~~~~i~~~---~~~i~~~~~~a~~~~~s~~~g~~~~~~~~~~~~ 192 (341)
+.+++.++-.+ +..+...+........-+...++|+++.++...
T Consensus 95 AialAvPva~Lg~~l~~~~~~~~s~~~h~adk~ae~gn~k~i~~~~~ 141 (265)
T TIGR00822 95 GIALALPLAAAGQVLTIFVRTITVLFQHAADKAAKEANTAAISRLHV 141 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhHHHHH
Confidence 33455554333 333444455555666667777788887766533
No 56
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=31.59 E-value=3.7e+02 Score=23.86 Aligned_cols=153 Identities=10% Similarity=0.031 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcC-chhHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHH
Q 019403 5 WDHAGKFALWMLPQLFAYALNFPIQKFLQAQR-KVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVI 83 (341)
Q Consensus 5 ~~~a~~y~~~~~~~~~~~~~~~~~~~~l~~~g-~~~~~~~~~~~~~~~ni~~~~l~i~~~~~g~~gaalat~is~~~~~~ 83 (341)
.+-.++|+...-|.+....+...+.+++-+.+ ...+. .-. ....|.+++..-+..++..
T Consensus 15 ~~~~k~yl~LtKPrvi~L~~it~~~g~~lA~~~~~~~~-------------l~~-------~~~~g~~L~a~~a~a~N~~ 74 (304)
T COG0109 15 RSTIKDYLQLTKPRVISLLLITAFAGMLLAPRGSINPL-------------LLL-------LTLLGGALGAGGAGAFNMY 74 (304)
T ss_pred HHHHHHHHHHhCCeeeehHHHHHHHHHHHcccccccHH-------------HHH-------HHHHHHHHHHHHHHHHhhh
Confidence 34567888888888777777777777777764 11111 111 1122334444444444432
Q ss_pred HHHHHHHHhc--cCCcCCCCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH----H
Q 019403 84 LQLLYIFITK--SDGAWSGFSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNI----Q 157 (341)
Q Consensus 84 ~~~~~~~~~~--~~~~~~~~~~~~~~~~k~il~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~aa~~~~~~i----~ 157 (341)
. -+-.+ .++..+|+....+-.-++.+.+|+-. +.+...+.....+...+.++.- .+.-|.+.+++ .
T Consensus 75 ~----DrDID~~M~RT~~RP~~~G~i~p~~al~fgl~L--~~~g~~~l~~~vn~laa~l~~~--gi~~Yv~vYT~~lKR~ 146 (304)
T COG0109 75 I----DRDIDALMERTRKRPLVTGLISPREALAFGLVL--GVAGFSLLWFLVNLLAAVLGLF--GIFFYVVVYTLWLKRR 146 (304)
T ss_pred h----hhhHHHhhhhccCCCCCCCccCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhhhccCC
Confidence 2 11111 11111111111111234555555543 3344444444555555555533 44555555555 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChH
Q 019403 158 GWDAMIAIGFNAAISVRVSNELGAGNAR 185 (341)
Q Consensus 158 ~~~~~i~~~~~~a~~~~~s~~~g~~~~~ 185 (341)
+.-..+.-|++++.-|.++..--.++.+
T Consensus 147 T~~NiviGg~aGa~PpliGwaAvtg~~~ 174 (304)
T COG0109 147 TPQNIVIGGFAGAMPPLIGWAAVTGSIS 174 (304)
T ss_pred cccceeeeeccccccccceeeeeeCCCC
Confidence 3556677889999999999877666665
No 57
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=29.29 E-value=2.3e+02 Score=25.10 Aligned_cols=57 Identities=11% Similarity=0.258 Sum_probs=28.0
Q ss_pred CcchhhHHHHHHHHHHhhhhHHhHHHHhcCCCcch--------hhHHHHHHHHHHHHHHHHHHHhcCH
Q 019403 258 GWQSLVAYINLGCYYIVGLPLGILLGFTFGFGAEG--------IWSGMIGGIGLQTLILIVITSITNW 317 (341)
Q Consensus 258 g~~~~~~~~~l~~~~ii~i~~~~~l~~~~~~g~~G--------~~~a~~~~~~~~~~~~~~~~~~~~~ 317 (341)
...+..-.+++++. +..|..++-+. ++|+..+ .+.......++.++..++++++++|
T Consensus 253 ~~N~~mk~LTvvt~--IflP~t~IaGi-yGMNf~~mP~l~~~~gy~~~l~~m~~i~~~~~~~fkrk~W 317 (318)
T TIGR00383 253 KMNEIMKILTVVST--IFIPLTFIAGI-YGMNFKFMPELNWKYGYPAVLIVMAVIALGPLIYFRRKGW 317 (318)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHH-HhCCcccCccccchhHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33444445555554 34566666554 2333321 2223333333444455677777777
No 58
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=26.63 E-value=85 Score=23.63 Aligned_cols=26 Identities=19% Similarity=0.184 Sum_probs=11.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhcC
Q 019403 291 EGIWSGMIGGIGLQTLILIVITSITN 316 (341)
Q Consensus 291 ~G~~~a~~~~~~~~~~~~~~~~~~~~ 316 (341)
.|+.++...+-+...++..+.++|++
T Consensus 67 ~~Ii~gv~aGvIg~Illi~y~irR~~ 92 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILLISYCIRRLR 92 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444544444443334444444433
No 59
>PF01148 CTP_transf_1: Cytidylyltransferase family; InterPro: IPR000374 Phosphatidate cytidylyltransferase (2.7.7.41 from EC) [, , ] (also known as CDP- diacylglycerol synthase) (CDS) is the enzyme that catalyzes the synthesis of CDP-diacylglycerol from CTP and phosphatidate (PA): CTP + phosphatidate = diphosphate + CDP-diacylglycerol CDP-diacylglycerol is an important branch point intermediate in both prokaryotic and eukaryotic organisms. CDS is a membrane-bound enzyme.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016020 membrane
Probab=21.05 E-value=5e+02 Score=21.80 Aligned_cols=25 Identities=12% Similarity=0.304 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC
Q 019403 158 GWDAMIAIGFNAAISVRVSNELGAG 182 (341)
Q Consensus 158 ~~~~~i~~~~~~a~~~~~s~~~g~~ 182 (341)
.+......+.+++...++++.+|++
T Consensus 132 ~~~~i~~~~~gD~~A~l~G~~fGk~ 156 (259)
T PF01148_consen 132 ALIGILILGIGDSFAYLVGRRFGKH 156 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3445677889999999999999988
No 60
>PF01384 PHO4: Phosphate transporter family; InterPro: IPR001204 The PHO-4 family of transporters includes the phosphate-repressible phosphate permease (PHO-4) from Neurospora crassa which is probably a sodium-phosphate symporter []. This family also includes the human leukemia virus receptor.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0006817 phosphate ion transport, 0016020 membrane
Probab=20.66 E-value=6.2e+02 Score=22.71 Aligned_cols=87 Identities=15% Similarity=0.140 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHhcccccccccCc-------HHHHHHHHHHHHHHHHHHHHhhHHHH--HH------HHHhhcCcc
Q 019403 196 ITAVTIGVCCTILVLATRYNFPFLFTNS-------EAVAAETTKLSILLAITVLMNCLQPV--LS------GVAVGAGWQ 260 (341)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~i~~lf~~~-------~~~~~~~~~~~~i~~~~~~~~~~~~~--~~------~~l~~~g~~ 260 (341)
+..++.++.+++..+.+.+.+.+-.+.+ .....+......+...+..-...+.. .. +.-++.+..
T Consensus 224 ~~~~~~~~~i~~G~~~~G~rv~~tvG~~it~l~p~~g~~a~l~sa~~v~~as~~GlPvStT~~~vgaivGvG~~~~~~~V 303 (326)
T PF01384_consen 224 WILLLGGLAIALGTLTGGWRVIRTVGEKITKLDPSRGFSAQLSSALTVLIASLLGLPVSTTHAIVGAIVGVGLARGFRSV 303 (326)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhccchhccCcchhHHHHHHHHHHHHHHHhcCCCcchhheeeeeeEeeeeecCCCcc
Confidence 3566677777888888888887776543 12222333333333333332322222 22 333444566
Q ss_pred hhhHHHHHHHHHHhhhhHHhHH
Q 019403 261 SLVAYINLGCYYIVGLPLGILL 282 (341)
Q Consensus 261 ~~~~~~~l~~~~ii~i~~~~~l 282 (341)
++...-.++..|++.+|.+.++
T Consensus 304 ~w~~~~~I~~~Wi~T~p~a~~~ 325 (326)
T PF01384_consen 304 NWKTVRKIVLGWILTLPIAALL 325 (326)
T ss_pred cHHHHHHHHHHHHHHHHHHHHh
Confidence 6788888888899988887653
No 61
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=20.16 E-value=3.6e+02 Score=24.14 Aligned_cols=54 Identities=20% Similarity=0.289 Sum_probs=25.0
Q ss_pred chhhHHHHHHHHHHhhhhHHhHHHHhcCCCcc---------hhhHHHHHHHHHHHHHHHHHHHhcCH
Q 019403 260 QSLVAYINLGCYYIVGLPLGILLGFTFGFGAE---------GIWSGMIGGIGLQTLILIVITSITNW 317 (341)
Q Consensus 260 ~~~~~~~~l~~~~ii~i~~~~~l~~~~~~g~~---------G~~~a~~~~~~~~~~~~~~~~~~~~~ 317 (341)
.+..-..++++. +..|...+... ++|+.. |.+++..+ .++.++..++++++++|
T Consensus 253 N~~mk~lTv~s~--if~pptliagi-yGMNf~~mP~~~~~~g~~~~l~~-~~~~~~~~~~~f~rk~W 315 (316)
T PRK11085 253 NRIIKIFSVVSV--VFLPPTLVASS-YGMNFEFMPELKWSFGYPGAIIL-MILAGLAPYLYFKRKNW 315 (316)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHhh-cccccCCCCCCCCcHHHHHHHHH-HHHHHHHHHHHHHHccc
Confidence 344444455554 34555555443 233322 33333333 33334445667777777
Done!