Query 019403
Match_columns 341
No_of_seqs 132 out of 1858
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 15:33:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019403.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019403hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 100.0 2.2E-38 7.6E-43 296.2 20.4 311 3-315 124-446 (460)
2 3mkt_A Multi antimicrobial ext 99.9 8.5E-21 2.9E-25 176.9 16.9 208 104-315 6-217 (460)
3 4aps_A DI-OR tripeptide H+ sym 75.3 46 0.0016 29.8 19.1 12 172-183 339-350 (491)
4 2ks1_B Epidermal growth factor 27.7 91 0.0031 17.9 4.2 6 68-73 14-19 (44)
5 2k1k_A Ephrin type-A receptor 23.9 53 0.0018 18.1 2.1 12 68-79 14-25 (38)
6 4ev6_A Magnesium transport pro 22.5 1.7E+02 0.0057 25.1 6.2 52 262-317 278-338 (339)
7 2knc_B Integrin beta-3; transm 21.5 1.8E+02 0.0061 19.0 5.7 19 289-307 9-27 (79)
8 2jwa_A Receptor tyrosine-prote 19.5 1.4E+02 0.0048 17.1 3.9 8 85-92 31-38 (44)
9 1pw4_A Glycerol-3-phosphate tr 14.3 5.8E+02 0.02 21.8 25.1 20 287-306 409-428 (451)
10 1s4x_A Integrin beta-3; cell a 10.4 88 0.003 19.8 0.8 37 305-341 10-46 (67)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=100.00 E-value=2.2e-38 Score=296.18 Aligned_cols=311 Identities=23% Similarity=0.369 Sum_probs=286.0
Q ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHH-h---CCCcchHHHHHHHHH
Q 019403 3 SFWDHAGKFALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILK-L---GWGLIGAAITLNLSW 78 (341)
Q Consensus 3 ~~~~~a~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~~~~l~i~~-~---~~g~~gaalat~is~ 78 (341)
|+.+.+.+|++++.++.|+..+...+++++|+.||++.++..++++.++|+++++++++. + ++|+.|+++|+.+++
T Consensus 124 ~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~ 203 (460)
T 3mkt_A 124 AMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVY 203 (460)
T ss_dssp HHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHHHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHH
Confidence 567899999999999999999999999999999999999999999999999999999975 4 799999999999999
Q ss_pred HHHHHHHHHHHHHhccCC--c-CCCCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 019403 79 WLIVILQLLYIFITKSDG--A-WSGFSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMN 155 (341)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~k~il~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~aa~~~~~~ 155 (341)
.+..++..+++++++... + ++++.+.+++.+|++++.++|..++++.....+.+++.+++++|++ ++++|+++.+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~--~va~~~i~~~ 281 (460)
T 3mkt_A 204 WIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGST--VVAAHQVALN 281 (460)
T ss_dssp HHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChH--HHHHHHHHHH
Confidence 999999888887663211 1 1223345678899999999999999999999999999999999876 8999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHH
Q 019403 156 IQGWDAMIAIGFNAAISVRVSNELGAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSI 235 (341)
Q Consensus 156 i~~~~~~i~~~~~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~~~ 235 (341)
+.++...+..+++++..|.+++++|+||.|+.++..+++.++++.++++.++.+.++++++.++|++|+++.+.+..+++
T Consensus 282 i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~ 361 (460)
T 3mkt_A 282 FSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLL 361 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888899999999
Q ss_pred HHHHHHHHhhHHHHHHHHHhhcCcchhhHHHHHHHHHHhhhhHHhHHHHh----cC-CCcchhhHHHHHHHHHHHHHHHH
Q 019403 236 LLAITVLMNCLQPVLSGVAVGAGWQSLVAYINLGCYYIVGLPLGILLGFT----FG-FGAEGIWSGMIGGIGLQTLILIV 310 (341)
Q Consensus 236 i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~l~~~~ii~i~~~~~l~~~----~~-~g~~G~~~a~~~~~~~~~~~~~~ 310 (341)
+++++.++.+++....+++++.||++.++..++.+.|++++|+++++... ++ +|+.|+|+++.+++.+.+++..+
T Consensus 362 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~ 441 (460)
T 3mkt_A 362 FAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQ 441 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999986 56 99999999999999999887766
Q ss_pred HHHhc
Q 019403 311 ITSIT 315 (341)
Q Consensus 311 ~~~~~ 315 (341)
++++.
T Consensus 442 ~~~~~ 446 (460)
T 3mkt_A 442 RLYWL 446 (460)
T ss_dssp SSSSS
T ss_pred HHHHH
Confidence 55554
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.86 E-value=8.5e-21 Score=176.93 Aligned_cols=208 Identities=16% Similarity=0.125 Sum_probs=192.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 019403 104 LAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGN 183 (341)
Q Consensus 104 ~~~~~~k~il~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~aa~~~~~~i~~~~~~i~~~~~~a~~~~~s~~~g~~~ 183 (341)
..++..|++++.++|..++++...+...+|+.+++++|++ ++++++.+.++..+...+..+++.+..+.+++++|++|
T Consensus 6 ~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~--~~~~~~~~~~i~~~~~~~~~g~~~~~~~~is~~~g~~~ 83 (460)
T 3mkt_A 6 RYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAI--DMAAVSIAASIWLPSILFGVGLLMALVPVVAQLNGAGR 83 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTT--TSSHHHHHHHHHHHHHHHHHHHHHHHGGGCTTTTSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4567899999999999999999999999999999999976 88999999999998888999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhh
Q 019403 184 ARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLV 263 (341)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 263 (341)
+|+.++..+.++...++.+++..+. +.+.+++..+++.|++..+.+..+++++.++.++..+.....+++|+.||++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 162 (460)
T 3mkt_A 84 QHKIPFEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPA 162 (460)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 9999999999999999999998876 678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHhHHHHh----cCCCcchhhHHHHHHHHHHHHHHHHHHHhc
Q 019403 264 AYINLGCYYIVGLPLGILLGFT----FGFGAEGIWSGMIGGIGLQTLILIVITSIT 315 (341)
Q Consensus 264 ~~~~l~~~~ii~i~~~~~l~~~----~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 315 (341)
+..++.+. ++++++++++.+. +++|+.|+.+++.+++.+..+....+++++
T Consensus 163 ~~~~~~~~-~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 217 (460)
T 3mkt_A 163 MVIGFIGL-LLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTS 217 (460)
T ss_dssp HHHHHHHH-HHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHH-HHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999 8999999999875 279999999999999999998877766654
No 3
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=75.30 E-value=46 Score=29.83 Aligned_cols=12 Identities=0% Similarity=-0.174 Sum_probs=6.4
Q ss_pred HHHHHHHhcCCC
Q 019403 172 SVRVSNELGAGN 183 (341)
Q Consensus 172 ~~~~s~~~g~~~ 183 (341)
....++.+|+++
T Consensus 339 ~~~l~~r~~~r~ 350 (491)
T 4aps_A 339 FAWLWTAWKKNQ 350 (491)
T ss_dssp HHHHHHHTTTC-
T ss_pred HHHHHHHHhccC
Confidence 344566677554
No 4
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=27.66 E-value=91 Score=17.85 Aligned_cols=6 Identities=0% Similarity=-0.003 Sum_probs=2.2
Q ss_pred chHHHH
Q 019403 68 IGAAIT 73 (341)
Q Consensus 68 ~gaala 73 (341)
.+...+
T Consensus 14 A~gVVg 19 (44)
T 2ks1_B 14 ATGMVG 19 (44)
T ss_dssp THHHHH
T ss_pred EeehhH
Confidence 333333
No 5
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=23.93 E-value=53 Score=18.12 Aligned_cols=12 Identities=17% Similarity=0.030 Sum_probs=5.2
Q ss_pred chHHHHHHHHHH
Q 019403 68 IGAAITLNLSWW 79 (341)
Q Consensus 68 ~gaalat~is~~ 79 (341)
.|.+.+.+.+-.
T Consensus 14 AGiVvG~v~gv~ 25 (38)
T 2k1k_A 14 VAVIFGLLLGAA 25 (38)
T ss_dssp HHHHHHHHHHHH
T ss_pred eeeehHHHHHHH
Confidence 444444444333
No 6
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=22.51 E-value=1.7e+02 Score=25.10 Aligned_cols=52 Identities=15% Similarity=0.343 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHHhhhhHHhHHHHhcCCCc---------chhhHHHHHHHHHHHHHHHHHHHhcCH
Q 019403 262 LVAYINLGCYYIVGLPLGILLGFTFGFGA---------EGIWSGMIGGIGLQTLILIVITSITNW 317 (341)
Q Consensus 262 ~~~~~~l~~~~ii~i~~~~~l~~~~~~g~---------~G~~~a~~~~~~~~~~~~~~~~~~~~~ 317 (341)
..-.+++++. +.+|+.++.+. ++|+. .|.|++..+ .++.++..++++++++|
T Consensus 278 ~mk~LTiit~--IflP~T~IaGi-yGMNf~~mPel~~~~gy~~~l~~-m~~~~~~~~~~fkrk~W 338 (339)
T 4ev6_A 278 IMKILTMVTT--IFAVPMWITGI-YGMNFSYLPLANNPQGFWLVMAL-MVVIIMIFVYIFRRSGW 338 (339)
T ss_dssp HHHHHHHHHH--HSSHHHHHHHH-TTCCCSCCTTSSCTTHHHHHHHH-HHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHH--HHHHHHHHHhh-ccCcCCCCCCccCchHHHHHHHH-HHHHHHHHHHHHHHcCC
Confidence 3334555554 44667666554 23333 234444433 34444555667777777
No 7
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=21.48 E-value=1.8e+02 Score=19.01 Aligned_cols=19 Identities=21% Similarity=0.158 Sum_probs=8.9
Q ss_pred CcchhhHHHHHHHHHHHHH
Q 019403 289 GAEGIWSGMIGGIGLQTLI 307 (341)
Q Consensus 289 g~~G~~~a~~~~~~~~~~~ 307 (341)
++.++..+.+.+-++..++
T Consensus 9 n~~~Iv~gvi~gilliGll 27 (79)
T 2knc_B 9 DILVVLLSVMGAILLIGLA 27 (79)
T ss_dssp CSHHHHHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHH
Confidence 3444555555554444443
No 8
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=19.46 E-value=1.4e+02 Score=17.07 Aligned_cols=8 Identities=13% Similarity=-0.251 Sum_probs=3.7
Q ss_pred HHHHHHHh
Q 019403 85 QLLYIFIT 92 (341)
Q Consensus 85 ~~~~~~~~ 92 (341)
..+|++++
T Consensus 31 ~~~~~RRR 38 (44)
T 2jwa_A 31 FGILIKRR 38 (44)
T ss_dssp HHHHHHHH
T ss_pred HHhheehh
Confidence 34444444
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=14.25 E-value=5.8e+02 Score=21.79 Aligned_cols=20 Identities=40% Similarity=0.506 Sum_probs=9.8
Q ss_pred CCCcchhhHHHHHHHHHHHH
Q 019403 287 GFGAEGIWSGMIGGIGLQTL 306 (341)
Q Consensus 287 ~~g~~G~~~a~~~~~~~~~~ 306 (341)
..|....++...+...+..+
T Consensus 409 ~~g~~~~~~~~~~~~~~~~~ 428 (451)
T 1pw4_A 409 FFGWDGGFMVMIGGSILAVI 428 (451)
T ss_dssp SSCSHHHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHH
Confidence 34655555554444444443
No 10
>1s4x_A Integrin beta-3; cell adhesion; NMR {Homo sapiens} SCOP: j.60.1.1 PDB: 2ljd_A* 2lje_A* 2ljf_A*
Probab=10.36 E-value=88 Score=19.81 Aligned_cols=37 Identities=8% Similarity=-0.054 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhcccCCCCCCCcCC
Q 019403 305 TLILIVITSITNWRKEADEAASRVMKWGGSTGEHWTE 341 (341)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 341 (341)
.++.++.+...++.....++++-...+....++.|++
T Consensus 10 ~liGl~lLliwKll~~i~DrrEyakFE~Er~~akw~~ 46 (67)
T 1s4x_A 10 SSGLVPRGSHMKLLITIHDRKEFAKFEEERARAKWDT 46 (67)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHTTTTTCS
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHccccc
Done!