Query 019403
Match_columns 341
No_of_seqs 132 out of 1858
Neff 10.1
Searched_HMMs 13730
Date Mon Mar 25 15:33:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019403.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019403hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 28.1 1.2E+02 0.0085 24.1 8.8 17 164-180 71-87 (447)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 8.4 4.2E+02 0.031 20.3 23.4 22 287-308 406-427 (447)
3 d2onkc1 f.58.1.1 (C:1-252) Mol 8.3 3.6E+02 0.026 19.4 10.2 36 175-210 161-196 (252)
4 d1m56d_ f.23.8.1 (D:) Bacteria 5.6 2.3E+02 0.017 14.6 4.8 33 178-210 3-35 (42)
5 d1v54l_ f.23.6.1 (L:) Mitochon 5.5 1.3E+02 0.0094 15.8 1.3 26 191-216 18-43 (46)
6 d1jb0i_ f.23.17.1 (I:) Subunit 5.3 85 0.0062 15.6 0.4 23 8-30 6-28 (38)
7 d1qled_ f.23.8.1 (D:) Bacteria 4.9 2.6E+02 0.019 14.5 4.8 32 179-210 5-36 (43)
8 d2iuba2 f.17.3.1 (A:286-349) M 4.7 3.1E+02 0.022 15.1 2.9 10 274-283 15-24 (64)
9 d2r6gg1 f.58.1.1 (G:7-296) Mal 4.1 6.8E+02 0.049 18.2 6.2 48 175-223 185-233 (290)
10 d2o3fa1 a.4.1.20 (A:1-83) Puta 3.5 3.6E+02 0.026 15.9 2.6 30 165-194 46-75 (83)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=28.12 E-value=1.2e+02 Score=24.08 Aligned_cols=17 Identities=35% Similarity=0.376 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHhc
Q 019403 164 AIGFNAAISVRVSNELG 180 (341)
Q Consensus 164 ~~~~~~a~~~~~s~~~g 180 (341)
..+++.-..-..++++|
T Consensus 71 ~~~~~~~~~G~l~Dr~g 87 (447)
T d1pw4a_ 71 AYGFSKFIMGSVSDRSN 87 (447)
T ss_dssp HHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 33344444455667666
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=8.38 E-value=4.2e+02 Score=20.32 Aligned_cols=22 Identities=41% Similarity=0.563 Sum_probs=11.9
Q ss_pred CCCcchhhHHHHHHHHHHHHHH
Q 019403 287 GFGAEGIWSGMIGGIGLQTLIL 308 (341)
Q Consensus 287 ~~g~~G~~~a~~~~~~~~~~~~ 308 (341)
..|..+.++.......+..++.
T Consensus 406 ~~g~~~~~~~~~~~~~~~~~~~ 427 (447)
T d1pw4a_ 406 FFGWDGGFMVMIGGSILAVILL 427 (447)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHH
T ss_pred HhChHHHHHHHHHHHHHHHHHH
Confidence 4566666655555555544443
No 3
>d2onkc1 f.58.1.1 (C:1-252) Molybdate/tungstate transport system permease protein WtpB (ModB) {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=8.28 E-value=3.6e+02 Score=19.40 Aligned_cols=36 Identities=19% Similarity=0.160 Sum_probs=27.0
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019403 175 VSNELGAGNARAAKFSVLVVSITAVTIGVCCTILVL 210 (341)
Q Consensus 175 ~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (341)
.++..|+++.+..++..--..+-+...+.......-
T Consensus 161 aA~~lGas~~~~~~~i~lP~~~p~i~~~~~l~~~~~ 196 (252)
T d2onkc1 161 VARTLGSSPLRVFFTVSLPLSVRHIVAGAIMSWARG 196 (252)
T ss_dssp HHHHTTCCHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCccccceEEEhHHhHHHHHHHHHHHHHHH
Confidence 688999999999998877777766666666655444
No 4
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=5.60 E-value=2.3e+02 Score=14.60 Aligned_cols=33 Identities=6% Similarity=-0.056 Sum_probs=19.8
Q ss_pred HhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019403 178 ELGAGNARAAKFSVLVVSITAVTIGVCCTILVL 210 (341)
Q Consensus 178 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (341)
..|+-|.+.-.+.+.-.+++..-.++.+.+++.
T Consensus 3 kHG~MDi~vQEKTF~gFik~~t~~~i~~i~~li 35 (42)
T d1m56d_ 3 VAGSMDITQQEKTFAGFVRMVTWAAVVIVAALI 35 (42)
T ss_dssp CTTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777766666666555554444433
No 5
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.51 E-value=1.3e+02 Score=15.84 Aligned_cols=26 Identities=8% Similarity=0.128 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc
Q 019403 191 VLVVSITAVTIGVCCTILVLATRYNF 216 (341)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~i 216 (341)
.+....+++.++..+++.+++...++
T Consensus 18 ~rLla~m~~~fGsgfa~PF~ivRhqL 43 (46)
T d1v54l_ 18 WRLLAMMTLFFGSGFAAPFFIVRHQL 43 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccchHHHHHHHH
Confidence 44444555555555555555555443
No 6
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=5.30 E-value=85 Score=15.65 Aligned_cols=23 Identities=13% Similarity=0.387 Sum_probs=11.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHH
Q 019403 8 AGKFALWMLPQLFAYALNFPIQK 30 (341)
Q Consensus 8 a~~y~~~~~~~~~~~~~~~~~~~ 30 (341)
|.+|+-++..-+....+..+.-+
T Consensus 6 AAsyLPwI~iPvv~wl~p~vvMg 28 (38)
T d1jb0i_ 6 AASFLPWIFIPVVCWLMPTVVMG 28 (38)
T ss_dssp TTTTHHHHHHHHHHTHHHHHHHH
T ss_pred HHHhcchhHHHHHHHHHHHHHHH
Confidence 44566665555444444444333
No 7
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=4.92 E-value=2.6e+02 Score=14.46 Aligned_cols=32 Identities=9% Similarity=0.063 Sum_probs=19.0
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019403 179 LGAGNARAAKFSVLVVSITAVTIGVCCTILVL 210 (341)
Q Consensus 179 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (341)
.|+-|.+.-.+.+.-.+++..-.++.+.+++.
T Consensus 5 HG~MDi~vQEkTF~gFi~~~t~~~i~~i~~li 36 (43)
T d1qled_ 5 HGEMDIRHQQATFAGFIKGATWVSILSIAVLV 36 (43)
T ss_dssp TTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677776667666666666555554444333
No 8
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=4.68 E-value=3.1e+02 Score=15.14 Aligned_cols=10 Identities=30% Similarity=0.680 Sum_probs=4.8
Q ss_pred hhhhHHhHHH
Q 019403 274 VGLPLGILLG 283 (341)
Q Consensus 274 i~i~~~~~l~ 283 (341)
+-+|.+++-.
T Consensus 15 iflP~t~i~g 24 (64)
T d2iuba2 15 IFMPLTFIAG 24 (64)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 3455555443
No 9
>d2r6gg1 f.58.1.1 (G:7-296) Maltose transport system permease protein MalG {Escherichia coli [TaxId: 562]}
Probab=4.09 E-value=6.8e+02 Score=18.18 Aligned_cols=48 Identities=13% Similarity=0.103 Sum_probs=32.4
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-ccccccCc
Q 019403 175 VSNELGAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYN-FPFLFTNS 223 (341)
Q Consensus 175 ~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~lf~~~ 223 (341)
.++..|+++.+..++..--..+=+...+..++...- +.+. ...+++.+
T Consensus 185 AA~~~GAs~~~~f~~I~lPl~~p~i~~~~il~fi~~-~~~f~~~~~~~~~ 233 (290)
T d2r6gg1 185 AAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAA-ITEVPVASLLLRD 233 (290)
T ss_dssp HHHHTTCCHHHHHHHTTHHHHHHHHHHHHHHHHHHH-HTCCHHHHHHCCS
T ss_pred hHhhcCCCHHHHHHHHHHHhhhhhhhhHHHHHhhhh-ccccccceeccCC
Confidence 577889998888888888777777777777665544 3443 33444433
No 10
>d2o3fa1 a.4.1.20 (A:1-83) Putative transcriptional regulator YbbH {Bacillus subtilis [TaxId: 1423]}
Probab=3.52 E-value=3.6e+02 Score=15.85 Aligned_cols=30 Identities=20% Similarity=0.176 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 019403 165 IGFNAAISVRVSNELGAGNARAAKFSVLVV 194 (341)
Q Consensus 165 ~~~~~a~~~~~s~~~g~~~~~~~~~~~~~~ 194 (341)
.+++.++.....+.+|=+.+++.+......
T Consensus 46 ~~vS~sTi~Rf~kklG~~gf~e~k~~l~~e 75 (83)
T d2o3fa1 46 ANSSDAAVIRLCKSLGLKGFQDLKMRVAGD 75 (83)
T ss_dssp TTCCHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 456778888999999999999998876654
Done!