Query 019404
Match_columns 341
No_of_seqs 228 out of 710
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 15:34:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019404.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019404hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 100.0 7.1E-34 2.4E-38 224.2 5.7 69 255-324 7-75 (76)
2 1wj2_A Probable WRKY transcrip 100.0 1.5E-33 5E-38 223.3 4.9 73 251-324 6-78 (78)
3 2rpr_A Flywch-type zinc finger 71.1 1.6 5.5E-05 33.6 1.6 49 262-323 24-74 (87)
4 1xiw_B T-cell surface glycopro 28.2 25 0.00085 26.9 1.7 49 263-320 17-75 (79)
5 3iot_A Maltose-binding protein 24.4 44 0.0015 31.5 3.1 14 50-63 359-372 (449)
6 2vsd_A CHIR AB1; immune system 22.7 14 0.00049 27.9 -0.6 36 284-322 69-104 (105)
7 1xiw_A T-cell surface glycopro 20.4 20 0.0007 29.4 -0.1 28 262-289 32-78 (105)
8 1cz6_A Protein (androctonin); 18.7 27 0.00093 21.8 0.2 7 284-290 16-22 (26)
9 2v9t_A Roundabout homolog 1; s 17.9 40 0.0014 25.0 1.0 33 282-320 83-115 (117)
10 3rzn_A GLTP, glycolipid transf 11.0 1.5E+02 0.0051 26.4 3.0 52 17-68 142-196 (209)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=100.00 E-value=7.1e-34 Score=224.16 Aligned_cols=69 Identities=57% Similarity=1.139 Sum_probs=64.1
Q ss_pred cCCccCCCCCcccccccCCccCCCCCCCccccccCCCCCCCcccceeecCCCCCeEEEEEecCCCCCCcc
Q 019404 255 SSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHSQAA 324 (341)
Q Consensus 255 s~~~~d~~~DGy~WRKYGQK~Ikgs~~pRsYYrCs~~~gC~A~K~Ver~~dDp~~~~vtY~G~HnH~~~~ 324 (341)
+....++++|||+|||||||.|||++|||+||||+ ..||+|+|+|||+.+|+.+++|||+|+|||+.|.
T Consensus 7 t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt-~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 75 (76)
T 2ayd_A 7 TQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCS-SPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP 75 (76)
T ss_dssp EECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEEC-STTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred ecCCCCcCCCCchhhhCcccccCCCCCceeEeEcC-CCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence 34567899999999999999999999999999998 5899999999999999999999999999999764
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=99.98 E-value=1.5e-33 Score=223.31 Aligned_cols=73 Identities=52% Similarity=1.013 Sum_probs=65.2
Q ss_pred EecccCCccCCCCCcccccccCCccCCCCCCCccccccCCCCCCCcccceeecCCCCCeEEEEEecCCCCCCcc
Q 019404 251 VPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHSQAA 324 (341)
Q Consensus 251 vp~~s~~~~d~~~DGy~WRKYGQK~Ikgs~~pRsYYrCs~~~gC~A~K~Ver~~dDp~~~~vtY~G~HnH~~~~ 324 (341)
|...+....++++|||+|||||||.|||++|||+||||+ .+||+|+|+|||+.+|+.+++|||+|+|||+.|+
T Consensus 6 ~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt-~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 78 (78)
T 1wj2_A 6 SGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCT-TPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 78 (78)
T ss_dssp --CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEE-CSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred EEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecC-cCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence 334445567899999999999999999999999999998 5999999999999999999999999999999763
No 3
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=71.14 E-value=1.6 Score=33.63 Aligned_cols=49 Identities=18% Similarity=0.367 Sum_probs=31.2
Q ss_pred CCCcccccccCCccCCCCCCCccccccCCC--CCCCcccceeecCCCCCeEEEEEecCCCCCCc
Q 019404 262 PPDEYSWRKYGQKPIKGSPYPRGYYKCSTM--RGCPARKHVERAPDDPTMLIVTYEGEHRHSQA 323 (341)
Q Consensus 262 ~~DGy~WRKYGQK~Ikgs~~pRsYYrCs~~--~gC~A~K~Ver~~dDp~~~~vtY~G~HnH~~~ 323 (341)
.-|||...+--+ ...+.|.+|+.. .+|.|+=.... ++ + ...+.|||++.
T Consensus 24 v~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~~--~~---~--~~~~~HnH~p~ 74 (87)
T 2rpr_A 24 VHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQG--HR---I--MVMRSHCHQPD 74 (87)
T ss_dssp EETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEET--TE---E--EECSCCSSCCC
T ss_pred EECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEcC--CC---E--ECCCCcCCCCc
Confidence 358887775321 123689999852 48999855442 22 2 35799999754
No 4
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=28.17 E-value=25 Score=26.86 Aligned_cols=49 Identities=18% Similarity=0.287 Sum_probs=26.9
Q ss_pred CCcccccccCCcc--------CC--CCCCCccccccCCCCCCCcccceeecCCCCCeEEEEEecCCCC
Q 019404 263 PDEYSWRKYGQKP--------IK--GSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRH 320 (341)
Q Consensus 263 ~DGy~WRKYGQK~--------Ik--gs~~pRsYYrCs~~~gC~A~K~Ver~~dDp~~~~vtY~G~HnH 320 (341)
.+++.|-|-|... +. ...-|||||.|. +.+.+. ...+.|.|-|.=-+||
T Consensus 17 ~~~i~W~k~~~~i~~~~~~tL~L~~~~~d~sG~Y~C~------~~~~~~---~~~s~LqV~yR~C~NC 75 (79)
T 1xiw_B 17 NTSITWVEGTVGTLLSDITRLDLGKRILDPRGIYRCN------GTDIYK---DKESTVQVHYRMCQSC 75 (79)
T ss_dssp SSCEEEEEECCCEEEGGGTEEEEEEGGGCCEEEEEEC-----------------CEEEEEEEECSCC-
T ss_pred CCCEEEEECCcccccccCCeEEeccCcCCCCeEEEec------CCCCCC---cccEEEEEEhhhcCCc
Confidence 4678999988642 23 334499999994 111111 0012466778776666
No 5
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=24.43 E-value=44 Score=31.48 Aligned_cols=14 Identities=0% Similarity=-0.121 Sum_probs=5.6
Q ss_pred hhHHHHHHhhhhhh
Q 019404 50 DLTDLTVSKFKKVI 63 (341)
Q Consensus 50 ~itd~AVskFKkVI 63 (341)
+..+.+..+.++++
T Consensus 359 eal~~~~~~~~~i~ 372 (449)
T 3iot_A 359 AALAAAQTNAAAMA 372 (449)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 33344444444433
No 6
>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus}
Probab=22.75 E-value=14 Score=27.94 Aligned_cols=36 Identities=33% Similarity=0.610 Sum_probs=16.0
Q ss_pred cccccCCCCCCCcccceeecCCCCCeEEEEEecCCCCCC
Q 019404 284 GYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHSQ 322 (341)
Q Consensus 284 sYYrCs~~~gC~A~K~Ver~~dDp~~~~vtY~G~HnH~~ 322 (341)
+-|+|....+-+ .+.....|+-.|.|+|.+.|.|..
T Consensus 69 G~Y~C~~~n~~~---~~~s~~Sdpl~L~V~~~~~~~~~~ 104 (105)
T 2vsd_A 69 GTYQCRYQVSEP---LWTSNQSDPVELVLTIEGRHHHHH 104 (105)
T ss_dssp EEEEEEEEEETT---EEECCCCCCEEECCC---------
T ss_pred eEEEEEEEcCCC---CcccCCCCCEEEEEEEeccccccC
Confidence 789995211111 122335789999999999998863
No 7
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=20.38 E-value=20 Score=29.44 Aligned_cols=28 Identities=25% Similarity=0.491 Sum_probs=19.2
Q ss_pred CCCcccccccCCcc----------------CCCCCC---CccccccC
Q 019404 262 PPDEYSWRKYGQKP----------------IKGSPY---PRGYYKCS 289 (341)
Q Consensus 262 ~~DGy~WRKYGQK~----------------Ikgs~~---pRsYYrCs 289 (341)
+++...|-|-|+.. +.++-. ||+||.|.
T Consensus 32 ~~~~I~W~k~~~~i~~~~~~~~~~~~~~~L~L~~~~~~d~sG~Y~C~ 78 (105)
T 1xiw_A 32 PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCY 78 (105)
T ss_dssp TTSCEEEEETTEEESSSCSCTTEEEETTEEEETTCCHHHHCEEEEEE
T ss_pred CCCceEEEeCCccccccccccccccCCCeEEeccccccCCCceEEEc
Confidence 34568888877542 445533 99999994
No 8
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=18.71 E-value=27 Score=21.82 Aligned_cols=7 Identities=57% Similarity=1.440 Sum_probs=5.8
Q ss_pred cccccCC
Q 019404 284 GYYKCST 290 (341)
Q Consensus 284 sYYrCs~ 290 (341)
.||+|++
T Consensus 16 cyykctn 22 (26)
T 1cz6_A 16 CYYKCTN 22 (26)
T ss_dssp CEEEECC
T ss_pred eEEEccC
Confidence 5999974
No 9
>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}
Probab=17.89 E-value=40 Score=25.04 Aligned_cols=33 Identities=30% Similarity=0.461 Sum_probs=13.0
Q ss_pred CccccccCCCCCCCcccceeecCCCCCeEEEEEecCCCC
Q 019404 282 PRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRH 320 (341)
Q Consensus 282 pRsYYrCs~~~gC~A~K~Ver~~dDp~~~~vtY~G~HnH 320 (341)
..+.|.|. |...+-........+.|.|.-+|.|
T Consensus 83 D~G~Y~C~------a~N~~G~~~s~~~~l~~~~~~~~~~ 115 (117)
T 2v9t_A 83 DEGVYVCV------ARNYLGEAVSHDASLEVAAAAHHHH 115 (117)
T ss_dssp SCEEEEEE------EEETTEEEECCCEEEEEC-------
T ss_pred cCEEEEEE------EEeCccceEeeeEEEEhhhhhhhhc
Confidence 34566664 3333343344455566656555554
No 10
>3rzn_A GLTP, glycolipid transfer protein; GLTP-fold, lipid transport; HET: CIS; 1.10A {Homo sapiens} PDB: 1sx6_A* 2euk_A* 2eum_A* 2evd_A* 2evl_A* 2evs_A* 1swx_A 3rwv_A* 3s0k_A* 3s0i_A* 2evt_A* 1wbe_A* 3ric_A* 1tfj_A* 2bv7_A*
Probab=11.01 E-value=1.5e+02 Score=26.43 Aligned_cols=52 Identities=12% Similarity=0.265 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHH---HHHHHHHhcCCCCCCCCcchhhHHHHHHhhhhhhhhccc
Q 019404 17 TAIQEAATQGIKS---MEHLIRLMSHHQSSNHVDCSDLTDLTVSKFKKVISLLNR 68 (341)
Q Consensus 17 ~AvqEAA~agl~S---~e~li~lLSq~~~q~q~d~~~itd~AVskFKkVISLL~R 68 (341)
..|+.|+++|+.. -+.|+..|+..++..+.++.+.-...+..+++||..|+.
T Consensus 142 w~vr~a~~~A~~a~P~R~~fl~~l~~g~~~~ee~~~~~l~~~l~~l~~iv~~i~~ 196 (209)
T 3rzn_A 142 WIVQKIFQAALYAAPYKSDFLKALSKGQNVTEEECLEKIRLFLVNYTATIDVIYE 196 (209)
T ss_dssp HHHHHHHHHHGGGCCCHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3588888888887 489999997654433456777778888889999887753
Done!