BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019405
(341 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q58D06|WDR74_BOVIN WD repeat-containing protein 74 OS=Bos taurus GN=WDR74 PE=2 SV=1
Length = 385
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 89/155 (57%), Gaps = 5/155 (3%)
Query: 180 GGKGVEVNVWDLDKCEK-IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ 238
GGK + VWDL E+ ++ AK + L + P W FL + +K V T HQ
Sbjct: 149 GGKENALKVWDLQGSEEPLFRAKNVRNDWLDLRVPVWDQDIQFLP--ESQKLVTCTGYHQ 206
Query: 239 VRLYD-TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI 297
VR+YD S QRRPV+ + E P+ AV P+ ++ +GN G LA +D+R G+LLGC
Sbjct: 207 VRVYDPASPQRRPVLEATYGEYPLTAVTLTPEGNSVIVGNTHGQLAEIDLRQGRLLGCLK 266
Query: 298 GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332
G +GS+R + HP+ P++ASCGLD LR I+
Sbjct: 267 G-LAGSVRGLQCHPSKPLLASCGLDRVLRIHRIRN 300
>sp|Q6RFH5|WDR74_HUMAN WD repeat-containing protein 74 OS=Homo sapiens GN=WDR74 PE=1 SV=1
Length = 385
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 87/155 (56%), Gaps = 5/155 (3%)
Query: 180 GGKGVEVNVWDLDKCEK-IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ 238
GGK + +WDL E+ ++ AK + L + P W FL +K V T HQ
Sbjct: 149 GGKENALKIWDLQGSEEPVFRAKNVRNDWLDLRVPIWDQDIQFLP--GSQKLVTCTGYHQ 206
Query: 239 VRLYD-TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI 297
VR+YD S QRRPV+ + E P+ A+ P ++ +GN G LA +D+R G+LLGC
Sbjct: 207 VRVYDPASPQRRPVLETTYGEYPLTAMTLTPGGNSVIVGNTHGQLAEIDLRQGRLLGCLK 266
Query: 298 GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332
G +GS+R + HP+ P++ASCGLD LR I+
Sbjct: 267 G-LAGSVRGLQCHPSKPLLASCGLDRVLRIHRIQN 300
>sp|Q8VCG3|WDR74_MOUSE WD repeat-containing protein 74 OS=Mus musculus GN=Wdr74 PE=2 SV=1
Length = 384
Score = 108 bits (271), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 61/153 (39%), Positives = 86/153 (56%), Gaps = 5/153 (3%)
Query: 181 GKGVEVNVWDLDKCEK-IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239
GK + VWDL E+ ++ AK + L + P W FL +K V T HQV
Sbjct: 150 GKENALKVWDLQGSEEPVFRAKNVRNDWLDLRVPIWDQDTQFLP--GSQKLVTCTGYHQV 207
Query: 240 RLYD-TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG 298
R+YD S QRRPV+ + E P+ A+ P+ ++ +GN G LA +D R G+LLGC G
Sbjct: 208 RVYDPVSPQRRPVLEATYGEYPLTAMTLTPEGNSVIVGNTHGQLAEIDFRQGRLLGCLKG 267
Query: 299 KCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331
+GS+R + HP+ P++ASCGLD LR I+
Sbjct: 268 -LAGSVRGLQCHPSKPLLASCGLDRVLRIHRIR 299
>sp|Q54FW9|Y0555_DICDI WD repeat-containing protein DDB_G0290555 OS=Dictyostelium
discoideum GN=DDB_G0290555 PE=4 SV=1
Length = 508
Score = 85.1 bits (209), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 95/171 (55%), Gaps = 12/171 (7%)
Query: 173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA 232
++KF+ FGGK V + +WDL+K K ++AK + L + P +++ D K +
Sbjct: 173 NDKFA-FGGKDVNLTIWDLEKQVKTYSAKFK-HDFLNLQEPVSINVVKYMNDD---KILI 227
Query: 233 GTNDHQVRLYD--TSAQRRPVMSFDFRETPIKAV--AEEPDSFNIYIGNGSGDLASVDIR 288
G+ D +++ YD + R + F + PI+++ + + + Y + G + D+R
Sbjct: 228 GS-DFRIKAYDLRSKTNRSSFLDVSFSKHPIQSIQYTNQKEHY-FYASDSIGKVFCYDVR 285
Query: 289 TGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339
T + +G F +GS++ IA HPTLP++A+ GLD +LR +++ R++L +
Sbjct: 286 TSRQVGSF-KDSAGSVKDIAIHPTLPLLATVGLDRHLRVYNLDNRKMLHKI 335
>sp|Q5A2T0|NSA1_CANAL Ribosome biogenesis protein NSA1 OS=Candida albicans (strain SC5314
/ ATCC MYA-2876) GN=NSA1 PE=3 SV=1
Length = 406
Score = 61.6 bits (148), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 72/168 (42%), Gaps = 23/168 (13%)
Query: 193 KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM 252
K + I+ AK + L + P W T+ F K V T Q+RLYDT+ R+P
Sbjct: 192 KPQIIFKAKNVRNDHLELRVPIWITNILFAKAAKGYKLVTSTRYGQIRLYDTAEGRKPRK 251
Query: 253 SFDFRETPIKAVAEEPDSFNIYIGNGSGDLAS------VDIR---------------TGK 291
+ E PI + D I + L + VD + K
Sbjct: 252 DYKVTEKPIVTLTFANDEQTEIIVTDTHSLIAKYSLTQVDEKAFKTISASAGEIVKPVPK 311
Query: 292 LLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339
LLG F G +G+ + H I+A GLD YLR +D+++R++L+ V
Sbjct: 312 LLGKFTGGNTGA--TFGVHAYERIVAFAGLDRYLRVFDLESREILAKV 357
>sp|Q6BUJ2|NSA1_DEBHA Ribosome biogenesis protein NSA1 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=NSA1 PE=3 SV=1
Length = 430
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 77/166 (46%), Gaps = 24/166 (14%)
Query: 197 IWTAKPPPKNSLGIFTPTWFTSAAFLSID--DHRKFVAGTNDHQVRLYDTSAQRRPVMSF 254
I+TA+ + L + P W +S F D KF+ T QVR+YDT+ +RP+ +
Sbjct: 193 IFTARNVKNDHLDLRPPIWISSILFFEEKPKDGYKFLTSTRYGQVRIYDTTHGKRPIQDY 252
Query: 255 DFRETPIKAV----AEEP----DSFNIYIGNGSGDLASVDIRT------------GKLLG 294
E PI + +EE D+ N+ + S +T KLLG
Sbjct: 253 KVCEKPIVTLNFADSEEEVIVSDTHNLVAKYSLAQIDSKAFKTHSASAGEITKPVSKLLG 312
Query: 295 CF-IGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339
F G +G+I + II++ GLD YLR +DI +R++L+ V
Sbjct: 313 KFSAGGNTGAIVGVNIFDD-EIISTGGLDRYLRTYDISSREILAKV 357
>sp|A5DX41|NSA1_LODEL Ribosome biogenesis protein NSA1 OS=Lodderomyces elongisporus
(strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 /
NRRL YB-4239) GN=NSA1 PE=3 SV=1
Length = 447
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 77/167 (46%), Gaps = 26/167 (15%)
Query: 197 IWTAKPPPKNSLGIFTPTWFTSAAFLS---IDDHRKFVAGTNDHQVRLYDTSAQRRPVMS 253
++ AK + L + P W T+ F + + K + T Q+R+YDT R+PV
Sbjct: 237 LFKAKNVSNDHLNLRVPIWITNILFFTNNVTNGQYKLITSTRYGQLRIYDTKHGRKPVKD 296
Query: 254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLA---SVDI------RTG------------KL 292
+ TPI + D + + +L S+DI +T KL
Sbjct: 297 YPVSTTPILTLLFGNDKETEVVLTDTQNLMAKYSLDIIDDKAFKTNSASAGDIIKPVPKL 356
Query: 293 LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339
LG + G +G+ ++A+ I+A GLD YLR +D+++RQ+L+ V
Sbjct: 357 LGKYTGGNTGA--TLAQQVYEGIVAFAGLDRYLRVFDVESRQILAKV 401
>sp|A3LVX0|NSA1_PICST Ribosome biogenesis protein NSA1 OS=Scheffersomyces stipitis
(strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL
Y-11545) GN=NSA1 PE=3 SV=2
Length = 430
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 84/187 (44%), Gaps = 36/187 (19%)
Query: 177 SLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR--KFVAGT 234
+F + VE N K E ++TAK + L + P W T F + + KF+ T
Sbjct: 185 EIFDTENVENNF----KSEVVFTAKNVKNDHLDLRVPVWITKIRFFTEQPEKGYKFITAT 240
Query: 235 NDHQVRLYDTSAQRRPVMSFDFRETPIKAVA---EEP------DSFNIYIGNGSGDLASV 285
+ Q+R+YDT+ RRPV F + PI + EE DS N+ I S L V
Sbjct: 241 HYGQIRVYDTNHGRRPVRDFTVCQKPILTLTFANEEESEVIISDSHNL-IAKHS--LIQV 297
Query: 286 DIR---------------TGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDI 330
D + KLLG F+ + G+ + L + + GLD YLR +D+
Sbjct: 298 DDKASKTHSASAGDIIKPVAKLLGRFVDQF-GATYGVEVGEGL--LVTGGLDRYLRVFDL 354
Query: 331 KTRQLLS 337
+R++++
Sbjct: 355 ASREIVA 361
>sp|O94698|NSA1_SCHPO Ribosome biogenesis protein nsa1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=nsa1 PE=3 SV=1
Length = 387
Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 71/167 (42%), Gaps = 16/167 (9%)
Query: 185 EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFL----------SIDDHR---KFV 231
E+ +W + K++ K +SL + W T F S DD F
Sbjct: 167 ELELWRTENVVKVFQGKNVKNDSLNLRVRVWITGIVFTEDIINVIDGKSEDDESLCFHFA 226
Query: 232 AGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK 291
T+ Q+R YDT RRPV +FD +P+ V P +Y + ++ D K
Sbjct: 227 TITHYGQLRFYDTKHGRRPVSTFDVSTSPLSHVGLLPSIKLLYFADKRAQISIFDHSKKK 286
Query: 292 LLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSA 338
++G F G G+ SI H ++A GLD +R +D + L +A
Sbjct: 287 VIGRFQG-VKGAPSSI--HCLGNVVAITGLDRNVRIFDADRKPLANA 330
>sp|A5DKC4|NSA1_PICGU Ribosome biogenesis protein NSA1 OS=Meyerozyma guilliermondii
(strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC
10279 / NRRL Y-324) GN=NSA1 PE=3 SV=2
Length = 398
Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 115/269 (42%), Gaps = 53/269 (19%)
Query: 107 VGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTV--------KSWN 158
V LH+F S L+ GKA++ + K + E C V +++
Sbjct: 98 VSLHVF--------SEFDALVMGLDSGKAAL--VGFHKNTLEKECQIVDLPGGKPIEAFE 147
Query: 159 VCAS--GTIAF----SKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFT 212
C S G A+ + + I + F + GK V++ L+ E ++ AK + L +
Sbjct: 148 ACPSQPGVFAYGGKENDLRIVKMFEV--GKKVKL----LESVEVLFAAKNVKNDHLDLRV 201
Query: 213 PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVA-EEPDSF 271
P W T F+S + K + T Q+R+YDT+ R+P + PI + +S
Sbjct: 202 PIWITKIRFISSKNSYKLITATRYGQLRIYDTNHGRKPAHDYQVCTNPIITLNFAGSNSD 261
Query: 272 NIYIGNGSG-----DLASVDIRTGK---------------LLGCFI-GKCSGSIRSIARH 310
+ I + L S+D + K LLG + G +G+I ++
Sbjct: 262 EVIITDNRNMVARHSLVSIDKKAFKTNSATVGDIIKPVPRLLGKYQEGGNTGAIFGVSCF 321
Query: 311 PTLPIIASCGLDSYLRFWDIKTRQLLSAV 339
+A+ GLD YLR +D++TR+++S V
Sbjct: 322 KD-TFVATGGLDRYLRVYDLETREMVSKV 349
>sp|Q96WV5|COPA_SCHPO Putative coatomer subunit alpha OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBPJ4664.04 PE=1 SV=1
Length = 1207
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL 313
F+ R + K VA P I +G + D R G LL F G G +R IA HPT
Sbjct: 7 FESRSSRAKGVAFHPTQPWILTSLHNGRIQLWDYRMGTLLDRFDGH-DGPVRGIAFHPTQ 65
Query: 314 PIIASCGLDSYLRFWDIKTRQLLSAVC 340
P+ S G D + W+ K+R+LL ++C
Sbjct: 66 PLFVSGGDDYKVNVWNYKSRKLLFSLC 92
>sp|Q754U4|NSA1_ASHGO Ribosome biogenesis protein NSA1 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=NSA1
PE=3 SV=1
Length = 435
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 97/226 (42%), Gaps = 36/226 (15%)
Query: 147 AESSCSTVKSWNVCASGTIAFSKV-DISEKFSL---FGG-----KGVEVNVWDLDKCEKI 197
A+ K+++V G + F+++ D+ E L +GG K VEV+ DL++ E+I
Sbjct: 151 ADGDLKLQKTFSV--RGPVEFAQLYDLEETEKLVFAYGGEDNLIKLVEVS-RDLEQLEQI 207
Query: 198 WTAKPPPKNSLGIFTPTWFTSAAFL-------SIDDHRKFVAGTNDHQVRLYDTSAQRRP 250
W AK + L + P W + FL S + +F+A T + Y T+ R+P
Sbjct: 208 WEAKNVKNDRLDLKVPIWPAALRFLQPAVSPASEGLNYQFIAVTRHSHLHFYQTTHGRKP 267
Query: 251 VMSFDF---RE-----------TPIKAVAEEP-DSFNIYIGNGSGDLASVDIRTGKLLGC 295
S D RE TP+ V + F+I + + + +G LLG
Sbjct: 268 FRSVDLLPNREPTTSLEVVGDVTPLGNVKSTSFEGFSIITTDTKKSILQFEP-SGHLLGK 326
Query: 296 FIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVCS 341
F G S H + GLD Y+R +++K R +L V +
Sbjct: 327 FGGSDIKGFPSYI-HVQGKYLVEGGLDRYVRVFELKNRNMLLKVFA 371
>sp|Q6CKH7|NSA1_KLULA Ribosome biogenesis protein NSA1 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=NSA1 PE=3 SV=1
Length = 436
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 117/269 (43%), Gaps = 47/269 (17%)
Query: 103 DDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA- 161
+D V L+L K+ S+++ L T G ++ +++ + S + S + A
Sbjct: 121 EDQFVELYLIKK-----SAKNPIFLAATKSGNVTIIEVDL----HSTKISKIASHKIKAP 171
Query: 162 SGTIAFSKVDISEKFSL-FGGKGVEVNVW----DLDKCEKIWTAKPPPKNSLGIFTPTWF 216
+ +D S+KF + +GG+ V + D + IW AK P +++G+ P W
Sbjct: 172 VEFVTLYDLDKSDKFVMAYGGEENLVRLIELSSDFKEISDIWAAKNVPFDNIGLRVPAWD 231
Query: 217 TSAAFLSIDDH--RKFVAGTNDHQVRLYDTSAQR-RPVMSFDFRETPIKAVAEEPDSFNI 273
+ FL + + F+ T Q+R Y T+A+ RPV S + E+ +S I
Sbjct: 232 VALRFLESEKNGVYNFITITKYAQLRKYSTNAEDCRPVKSI-----TLLPKGEQLNSCKI 286
Query: 274 YIGNGS--GDLASVDIRTGKLLGC--------FIGKCSGSIRSIARHPTLPIIASC---- 319
IG+ S G+ S + + L F GK +R IA+ + ASC
Sbjct: 287 -IGDTSPLGNFQSSNFDELEFLAADSRKDVYQFNGKGR-LLRKIAK-GDITGFASCIAVT 343
Query: 320 -------GLDSYLRFWDIKTRQLLSAVCS 341
GLD Y+R +D+ +LL+ + +
Sbjct: 344 DKYLLQGGLDRYVRIFDLADYKLLAKIFT 372
>sp|Q12417|PRP46_YEAST Pre-mRNA-splicing factor PRP46 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PRP46 PE=1 SV=1
Length = 451
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 57/108 (52%), Gaps = 2/108 (1%)
Query: 226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASV 285
D+ F+ G+ND ++++D + + + ++ VA ++ + +
Sbjct: 151 DNEWFITGSNDTTMKVWDLATGKLKT-TLAGHVMTVRDVAVSDRHPYLFSVSEDKTVKCW 209
Query: 286 DIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR 333
D+ +++ + G SG +R+++ HPTL +IA+ G DS ++ WD++TR
Sbjct: 210 DLEKNQIIRDYYGHLSG-VRTVSIHPTLDLIATAGRDSVIKLWDMRTR 256
>sp|Q6CEC9|NSA1_YARLI Ribosome biogenesis protein NSA1 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=NSA1 PE=3 SV=1
Length = 410
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 68/157 (43%), Gaps = 20/157 (12%)
Query: 198 WTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF 256
+ A+ N + + P W + F + D D + + T Q+R+Y+T +RP F
Sbjct: 185 FQARNVKSNEIDMRVPVWISGILFQASDKDGFRVITATRHGQIRVYETWHGKRPKWDFKV 244
Query: 257 RETPIKAVAEEPDSFNI-------------YIGNGSGDLASVDIRTGKLLG----CFIGK 299
+ P++ +A D+ N+ + N L + D K C + K
Sbjct: 245 TKDPLRTLAPGMDASNVVSSDAHSSTFKFNFADNEKIVLKNKDNNQNKEHNRKSPCVVEK 304
Query: 300 CSGSIRSIARHPTLP--IIASCGLDSYLRFWDIKTRQ 334
GS+ ++ T ++A+ GLD YLR +D++T +
Sbjct: 305 FPGSLGAVLHLVTTDNGLLATVGLDRYLRIFDLETTE 341
>sp|P25382|NLE1_YEAST Ribosome assembly protein 4 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RSA4 PE=1 SV=3
Length = 515
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 1/106 (0%)
Query: 230 FVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT 289
V ++D+ + L++ +P+ + + VA PD I + + D R
Sbjct: 374 MVTASDDYTMFLWNPLKSTKPIARMTGHQKLVNHVAFSPDGRYIVSASFDNSIKLWDGRD 433
Query: 290 GKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL 335
GK + F G + S+ +A ++ SC D+ L+ WD++TR+L
Sbjct: 434 GKFISTFRGHVA-SVYQVAWSSDCRLLVSCSKDTTLKVWDVRTRKL 478
>sp|Q8BG40|KTNB1_MOUSE Katanin p80 WD40 repeat-containing subunit B1 OS=Mus musculus
GN=Katnb1 PE=1 SV=1
Length = 658
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 79/176 (44%), Gaps = 23/176 (13%)
Query: 169 KVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR 228
+++ E+ + G + + VWDL+ + + T +G A S+D H
Sbjct: 70 RLNTPEELIVAGSQSGSIRVWDLEAAKILRTL-------MG-------HKANICSLDFHP 115
Query: 229 --KFVA-GTNDHQVRLYDTSAQRRPVMSFDFR--ETPIKAVAEEPDSFNIYIGNGSGDLA 283
+FVA G+ D ++L+D RR F +R ++ + PD + +
Sbjct: 116 YGEFVASGSQDTNIKLWDI---RRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVK 172
Query: 284 SVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339
D+ GK++ F G +G + + HP ++AS D +RFWD++ Q++S +
Sbjct: 173 LWDLTAGKMMSEFPGH-TGPVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCI 227
>sp|Q9BVA0|KTNB1_HUMAN Katanin p80 WD40 repeat-containing subunit B1 OS=Homo sapiens
GN=KATNB1 PE=1 SV=1
Length = 655
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 79/176 (44%), Gaps = 23/176 (13%)
Query: 169 KVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR 228
+++ E+ + G + + VWDL+ + + T +G A S+D H
Sbjct: 70 RLNTPEELIVAGSQSGSIRVWDLEAAKILRTL-------MG-------HKANICSLDFHP 115
Query: 229 --KFVA-GTNDHQVRLYDTSAQRRPVMSFDFR--ETPIKAVAEEPDSFNIYIGNGSGDLA 283
+FVA G+ D ++L+D RR F +R ++ + PD + +
Sbjct: 116 YGEFVASGSQDTNIKLWDI---RRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVK 172
Query: 284 SVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339
D+ GK++ F G +G + + HP ++AS D +RFWD++ Q++S +
Sbjct: 173 LWDLTAGKMMSEFPGH-TGPVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCI 227
>sp|Q6C709|PRP46_YARLI Pre-mRNA-splicing factor PRP46 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=PRP46 PE=3 SV=2
Length = 441
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 55/108 (50%), Gaps = 2/108 (1%)
Query: 226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASV 285
+++ F G+ D ++++D A + ++ ++A+ P ++ G +
Sbjct: 143 ENQWFATGSADKTIKIWDL-ATGKLRLTLTGHIMGVRALGVSPRHPYMFSGGEDKMVKCW 201
Query: 286 DIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR 333
D+ T K++ + G S ++ S+ HPTL ++ S G D+ R WDI+TR
Sbjct: 202 DLETNKVVRHYHGHLS-AVYSLDIHPTLDVLVSAGRDAVARVWDIRTR 248
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 12/90 (13%)
Query: 261 IKAVAEEPDSFNIYIGNGSGD--LASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIAS 318
+++V EP+ N + GS D + D+ TGKL G G +R++ P P + S
Sbjct: 135 VRSVCVEPE--NQWFATGSADKTIKIWDLATGKLRLTLTGHIMG-VRALGVSPRHPYMFS 191
Query: 319 CGLDSYLRFWDIKTRQL-------LSAVCS 341
G D ++ WD++T ++ LSAV S
Sbjct: 192 GGEDKMVKCWDLETNKVVRHYHGHLSAVYS 221
>sp|Q32LN7|WDR61_BOVIN WD repeat-containing protein 61 OS=Bos taurus GN=WDR61 PE=2 SV=1
Length = 305
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 74/169 (43%), Gaps = 17/169 (10%)
Query: 170 VDISEKFSLFGGKGVEVNV--WDLDKCEKIWTAKPPPKNSLGI-FTPTWFTSAAFLSIDD 226
VDIS + ++ ++ WDL+ ++I + P ++ + F+P D
Sbjct: 70 VDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSP------------D 117
Query: 227 HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVD 286
+ GT+ +V ++ + ++ S D R I ++A PD + G G + D
Sbjct: 118 SQYLATGTHVGKVNIFGVESGKKE-YSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFD 176
Query: 287 IRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL 335
I TGKLL G IRS+ P ++ + D Y++ +D++ L
Sbjct: 177 IATGKLLHTLEGHAM-PIRSLTFSPDSQLLVTASDDGYIKIYDVQHANL 224
>sp|Q9GZS3|WDR61_HUMAN WD repeat-containing protein 61 OS=Homo sapiens GN=WDR61 PE=1 SV=1
Length = 305
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 74/169 (43%), Gaps = 17/169 (10%)
Query: 170 VDISEKFSLFGGKGVEVNV--WDLDKCEKIWTAKPPPKNSLGI-FTPTWFTSAAFLSIDD 226
VDIS + ++ ++ WDL+ ++I + P ++ + F+P D
Sbjct: 70 VDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSP------------D 117
Query: 227 HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVD 286
+ GT+ +V ++ + ++ S D R I ++A PD + G G + D
Sbjct: 118 SQYLATGTHVGKVNIFGVESGKKE-YSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFD 176
Query: 287 IRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL 335
I TGKLL G IRS+ P ++ + D Y++ +D++ L
Sbjct: 177 IATGKLLHTLEGHAM-PIRSLTFSPDSQLLVTASDDGYIKIYDVQHANL 224
>sp|Q4V7A0|WDR61_RAT WD repeat-containing protein 61 OS=Rattus norvegicus GN=Wdr61 PE=1
SV=1
Length = 305
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 74/169 (43%), Gaps = 17/169 (10%)
Query: 170 VDISEKFSLFGGKGVEVNV--WDLDKCEKIWTAKPPPKNSLGI-FTPTWFTSAAFLSIDD 226
VDIS + ++ ++ WDL+ +++ + P ++ + F+P D
Sbjct: 70 VDISHTLPIAASSSLDAHIRLWDLENGKQMKSIDAGPVDAWTLAFSP------------D 117
Query: 227 HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVD 286
+ GT+ +V ++ + ++ S D R I ++A PD + G G + D
Sbjct: 118 SQHLATGTHMGKVNIFGVESGKKE-YSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFD 176
Query: 287 IRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL 335
I TGKLL G IRS+ P ++ + D Y++ +D++ L
Sbjct: 177 IATGKLLHTLEGHAM-PIRSLTFSPDSQLLVTASDDGYIKIYDVQHANL 224
>sp|Q8BQM8|EMAL5_MOUSE Echinoderm microtubule-associated protein-like 5 OS=Mus musculus
GN=Eml5 PE=2 SV=2
Length = 1977
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 53/124 (42%), Gaps = 13/124 (10%)
Query: 228 RKFVAGTNDHQVRLYDTSAQR----RPVMSFDFRETPIKAVAEEPDSF--------NIYI 275
+ FV G D V L+D S +R + D + E+ S +I +
Sbjct: 914 KGFVTGGKDGMVALWDDSFERCLKTYAIKRADLAPGSKGLLLEDNPSIRAISLGHGHILV 973
Query: 276 GNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL 335
G +G++ VD ++G + G G + +A HP LPI A+ D LR WD+
Sbjct: 974 GTKNGEILEVD-KSGPITLLVQGHMEGEVWGLATHPYLPICATVSDDKTLRIWDLSPSHC 1032
Query: 336 LSAV 339
+ AV
Sbjct: 1033 MLAV 1036
Score = 40.0 bits (92), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 12/116 (10%)
Query: 230 FVAGTNDHQVRLYDTSAQRRPVMSFDFRETP-------IKAVAEEPDSFNIYIGNGSGDL 282
F G D +RL+D + +P+ D RET +++V D +I +G ++
Sbjct: 250 FATGGRDGCIRLWDLTF--KPITVIDLRETEQGYKGLSVRSVCWRGD--HILVGTQDSEI 305
Query: 283 ASVDIRT-GKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLS 337
+ + K G C G + ++A HPT P+ + D +R W + L++
Sbjct: 306 FEIVVHERNKPFLIMQGHCEGELWALAVHPTKPLAVTGSDDRSVRIWSLVDHALIA 361
Score = 32.3 bits (72), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 298 GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339
G G I +A HP+ S D +R WDI +++L+ V
Sbjct: 1699 GHVDGPIWGLATHPSRDFFLSAAEDGTVRLWDIADKKMLNKV 1740
>sp|Q9ERF3|WDR61_MOUSE WD repeat-containing protein 61 OS=Mus musculus GN=Wdr61 PE=2 SV=1
Length = 305
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 74/169 (43%), Gaps = 17/169 (10%)
Query: 170 VDISEKFSLFGGKGVEVNV--WDLDKCEKIWTAKPPPKNSLGI-FTPTWFTSAAFLSIDD 226
VDIS + ++ ++ WDL+ +++ + P ++ + F+P D
Sbjct: 70 VDISHTLPIAASSSLDAHIRLWDLENGKQMKSIDAGPVDAWTLAFSP------------D 117
Query: 227 HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVD 286
+ GT+ +V ++ + ++ S D R I ++A PD + G G + D
Sbjct: 118 SQYLATGTHMGKVNIFGVESGKKE-YSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFD 176
Query: 287 IRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL 335
I TGKLL G IRS+ P ++ + D Y++ +D++ L
Sbjct: 177 IATGKLLHTLEGHAM-PIRSLTFSPDSQLLVTASDDGYIKIYDVQHANL 224
>sp|A8QD31|ERB1_MALGO Ribosome biogenesis protein ERB1 OS=Malassezia globosa (strain ATCC
MYA-4612 / CBS 7966) GN=ERB1 PE=3 SV=2
Length = 864
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 83/213 (38%), Gaps = 24/213 (11%)
Query: 129 CTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS-EKFSLFGGKGVEVN 187
T +A+ ++ + +VS S + + + +A V + LF V
Sbjct: 661 ATVSPEAAGEAVLIHQVSKHRSQAPFRRTRRAGNSAMAVQCVCFHPSRPWLFVATQRYVR 720
Query: 188 VWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ 247
V+DL + + T +P G+ W +S DH + G+ D +V +D
Sbjct: 721 VYDLVQQSLVKTLQP------GV---RWISSLDVHPSGDH--VIIGSYDRRVLWFDLDLS 769
Query: 248 RRPVMSFDFRETPIKAVAEEPD-----------SFNIYIGNGSGDLASVDIRTG-KLLGC 295
RP + + ++AVA P + ++Y G DL + K+L
Sbjct: 770 ERPYKALRYHSRAVRAVAYHPRFPLFASAADDGTVHVYHGTVYSDLLQNALLVPLKILRG 829
Query: 296 FIGKCSGSIRSIARHPTLPIIASCGLDSYLRFW 328
+ + + SIA HPTLP + S G D R W
Sbjct: 830 HAVQDALGVLSIAWHPTLPWLVSAGADGDARLW 862
>sp|Q6CKE8|PRP46_KLULA Pre-mRNA-splicing factor PRP46 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=PRP46 PE=3 SV=1
Length = 434
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 54/108 (50%), Gaps = 2/108 (1%)
Query: 226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASV 285
D+ F G+ND ++++D +A + + + ++ +A ++ + +
Sbjct: 134 DNEWFATGSNDTTIKIWDLAAGKLKI-TLIGHVMSVRDIAISKRHPYMFSASEDKLVKCW 192
Query: 286 DIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR 333
D+ + F G SG + ++ HP+L IIA+ G D+ +R WDI++R
Sbjct: 193 DLERNTAIRDFHGHLSG-VHTVDVHPSLDIIATAGRDAVVRLWDIRSR 239
>sp|Q4V7Y7|KTNB1_XENLA Katanin p80 WD40 repeat-containing subunit B1 OS=Xenopus laevis
GN=katnb1 PE=1 SV=1
Length = 655
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 2/116 (1%)
Query: 218 SAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN 277
S+ L R G +D +V L+ + + +MS TP+++V I G+
Sbjct: 24 SSVVLGRSSGRLVATGGDDCRVHLWSVN-KPNCIMSLTGHTTPVESVRFNNSEELIVAGS 82
Query: 278 GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR 333
SG L D+ K+L +G ++ S+ HP +AS LD+ ++ WD++ +
Sbjct: 83 QSGSLRIWDLEAAKILRTLMGH-KANVSSLDFHPYGEFVASGSLDTNIKLWDVRRK 137
Score = 40.4 bits (93), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 72/167 (43%), Gaps = 19/167 (11%)
Query: 173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA 232
SE+ + G + + +WDL+ + + T N + L + +FVA
Sbjct: 74 SEELIVAGSQSGSLRIWDLEAAKILRTLMGHKAN------------VSSLDFHPYGEFVA 121
Query: 233 -GTNDHQVRLYDTSAQRRPVMSFDFR--ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT 289
G+ D ++L+D RR F ++ ++ + PD + + + D+
Sbjct: 122 SGSLDTNIKLWDV---RRKGCVFRYKGHTQAVRCLRFSPDGKWLASASDDHSVKLWDLTA 178
Query: 290 GKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLL 336
GK++ + + G + I HP ++AS D +RFWD++ QL+
Sbjct: 179 GKMMA-ELSEHKGPVNIIEFHPNEYLLASGSADRTVRFWDLEKFQLV 224
>sp|P49177|GBB_ARATH Guanine nucleotide-binding protein subunit beta OS=Arabidopsis
thaliana GN=GB1 PE=1 SV=1
Length = 377
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 32/67 (47%)
Query: 230 FVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT 289
F++G+ D RL+DT A R V +F E + V PD + G+ G DIRT
Sbjct: 220 FISGSCDSTARLWDTRAASRAVRTFHGHEGDVNTVKFFPDGYRFGTGSDDGTCRLYDIRT 279
Query: 290 GKLLGCF 296
G L +
Sbjct: 280 GHQLQVY 286
>sp|Q5ZJH5|WDR61_CHICK WD repeat-containing protein 61 OS=Gallus gallus GN=WDR61 PE=2 SV=1
Length = 305
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 74/169 (43%), Gaps = 17/169 (10%)
Query: 170 VDISEKFSLFGGKGVEVNV--WDLDKCEKIWTAKPPPKNSLGI-FTPTWFTSAAFLSIDD 226
VDIS S+ ++ ++ WDL+ ++I + P ++ + F+P D
Sbjct: 70 VDISHTGSIAASSSLDAHIRLWDLETGKQIKSIDAGPVDAWSLAFSP------------D 117
Query: 227 HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVD 286
+ G++ +V ++ ++ S D R I ++A PD + G G + D
Sbjct: 118 SQFLATGSHVGKVNIFGVETGKKE-YSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFD 176
Query: 287 IRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL 335
I TGKLL G IRS+ P ++ + D Y++ +D++ L
Sbjct: 177 IATGKLLHTLEGHAM-PIRSLTFSPDSQLLVTASDDGYIKIYDVQHANL 224
Score = 32.3 bits (72), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 70/159 (44%), Gaps = 19/159 (11%)
Query: 184 VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTN--DHQVR 240
V+V W+ +K + WT + + LG+ +S+D H +A ++ D +R
Sbjct: 44 VKVWKWNDEKLDLQWTLEG---HQLGV-----------VSVDISHTGSIAASSSLDAHIR 89
Query: 241 LYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC 300
L+D ++ + S D ++A PDS + G+ G + + TGK +
Sbjct: 90 LWDLETGKQ-IKSIDAGPVDAWSLAFSPDSQFLATGSHVGKVNIFGVETGKKEYSLDTRG 148
Query: 301 SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339
I SIA P +AS +D + +DI T +LL +
Sbjct: 149 K-FILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL 186
>sp|Q58D20|NLE1_BOVIN Notchless protein homolog 1 OS=Bos taurus GN=NLE1 PE=2 SV=3
Length = 486
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Query: 229 KFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR 288
+ V+G++D + L+ + ++P+ + I V PDS I + + D R
Sbjct: 344 RLVSGSDDFTLFLWSPAEDKKPLARMTGHQALINQVVFSPDSRVIASASFDKSIKLWDGR 403
Query: 289 TGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL 335
TGK L G + ++ IA ++ S DS L+ WD+K ++L
Sbjct: 404 TGKYLASLRGHVA-AVYQIAWSADSRLLVSGSSDSTLKVWDVKAQKL 449
>sp|Q05BV3|EMAL5_HUMAN Echinoderm microtubule-associated protein-like 5 OS=Homo sapiens
GN=EML5 PE=2 SV=3
Length = 1969
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 53/130 (40%), Gaps = 25/130 (19%)
Query: 228 RKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSF---------------- 271
+ FV G D V L+D S +R + IK A P S
Sbjct: 914 KGFVTGGKDGIVALWDDSFERC------LKTYAIKRAALAPGSKGLLLEDNPSIRAISLG 967
Query: 272 --NIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWD 329
+I +G +G++ VD ++G + G G + +A HP LPI A+ D LR WD
Sbjct: 968 HGHILVGTKNGEILEVD-KSGPITLLVQGHMEGEVWGLATHPYLPICATVSDDKTLRIWD 1026
Query: 330 IKTRQLLSAV 339
+ + AV
Sbjct: 1027 LSPSHCMLAV 1036
Score = 40.4 bits (93), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 12/116 (10%)
Query: 230 FVAGTNDHQVRLYDTSAQRRPVMSFDFRET-------PIKAVAEEPDSFNIYIGNGSGDL 282
F G D +RL+D + +P+ D RET +++V D +I +G ++
Sbjct: 250 FATGGRDGCIRLWDLTF--KPITVIDLRETDQGYKGLSVRSVCWRGD--HILVGTQDSEI 305
Query: 283 ASVDIRT-GKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLS 337
+ ++ K G C G + ++A HPT P+ + D +R W + L++
Sbjct: 306 FEIVVQERNKPFLIMQGHCEGELWALAVHPTKPLAVTGSDDRSVRIWSLVDHALIA 361
Score = 32.0 bits (71), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 298 GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339
G G I +A HP+ S D +R WDI +++L+ V
Sbjct: 1691 GHVDGPIWGLATHPSRDFFLSAAEDGTVRLWDIADKKMLNKV 1732
>sp|Q75BY3|PRP46_ASHGO Pre-mRNA-splicing factor PRP46 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=PRP46
PE=3 SV=2
Length = 425
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 10/112 (8%)
Query: 226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRET--PIKAVAEEPDSFNIYIGNGSGD-- 281
D+ F G+ND +R++D + + V T I A P Y+ + S D
Sbjct: 125 DNAWFATGSNDSTIRVWDLATGKLKVTLQGHIMTVRDICISARHP-----YMFSASQDKL 179
Query: 282 LASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR 333
+ D+ ++ F G SG + S+ HP+L +I S G DS +R WDI++R
Sbjct: 180 VKCWDLERNTVVRDFHGTLSG-VHSVDLHPSLDLIVSAGRDSVVRVWDIRSR 230
>sp|O13615|PRP46_SCHPO Pre-mRNA-splicing factor prp5 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=prp5 PE=1 SV=1
Length = 473
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 286 DIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ 334
D+ T K++ + G SG + ++ HPTL ++ + G D+ R WD++TRQ
Sbjct: 233 DLETNKVIRHYHGHLSG-VYALKLHPTLDVLVTAGRDAVARVWDMRTRQ 280
Score = 35.8 bits (81), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 261 IKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG 320
++ V EP + G G + D+ +G L G + ++R +A P P + SCG
Sbjct: 166 VRCVDVEPGNQWFCTGAGDRTIKIWDLASGVLKLTLTGHIA-TVRGLAVSPRHPYLFSCG 224
Query: 321 LDSYLRFWDIKTRQLL 336
D ++ WD++T +++
Sbjct: 225 EDKMVKCWDLETNKVI 240
>sp|Q5SQM0|EMAL6_MOUSE Echinoderm microtubule-associated protein-like 6 OS=Mus musculus
GN=Eml6 PE=2 SV=1
Length = 1958
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 19/134 (14%)
Query: 220 AFLSIDDHRKFVAGTNDHQVRLYD--------TSAQRRPVMS-----FDFRETP-IKAVA 265
A ++D + FV G D V L+D T A +R +S + P I+A+
Sbjct: 908 AMYALD--KGFVTGGKDGIVELWDDMFERCLKTYAIKRTALSTSSKGLLLEDNPSIRAIT 965
Query: 266 EEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYL 325
+I +G +G++ +D ++G + G G + +A HP LPI A+ D L
Sbjct: 966 --LGHGHILVGTKNGEILEID-KSGPMTLLVQGHMEGEVWGLAAHPLLPICATVSDDKTL 1022
Query: 326 RFWDIKTRQLLSAV 339
R W++ ++ + AV
Sbjct: 1023 RIWELSSQHRMLAV 1036
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 12/116 (10%)
Query: 230 FVAGTNDHQVRLYDTSAQRRPVMSFDFRETP-------IKAVAEEPDSFNIYIGNGSGDL 282
F G D +RL+DT +P+ D RET I++V + D + G ++
Sbjct: 250 FATGGRDGCIRLWDTDF--KPITKIDLRETEQGYKGLSIRSVCWKAD--RLLAGTQDSEI 305
Query: 283 ASVDIRT-GKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLS 337
V +R K + G C G + ++A HP P+ + D +R W + L++
Sbjct: 306 FEVIVRERDKPMLILQGHCEGELWALALHPKKPLAVTGSDDRSVRLWSLADHALIA 361
Score = 33.5 bits (75), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 30/67 (44%)
Query: 273 IYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332
I +G G++ V ++ G G I +A HP+ + S D R WD+
Sbjct: 1659 ILVGTKDGEIIEVGEKSAASNILIDGHMEGEIWGLATHPSKDMFISASNDGTARIWDLAD 1718
Query: 333 RQLLSAV 339
++LL+ V
Sbjct: 1719 KKLLNKV 1725
>sp|Q6ED65|EMAL5_RAT Echinoderm microtubule-associated protein-like 5 OS=Rattus norvegicus
GN=Eml5 PE=1 SV=2
Length = 1977
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 53/124 (42%), Gaps = 13/124 (10%)
Query: 228 RKFVAGTNDHQVRLYDTSAQR----RPVMSFDFRETPIKAVAEEPDSF--------NIYI 275
+ FV G D V L+D S +R + D + E+ S +I +
Sbjct: 914 KGFVTGGKDGVVALWDDSFERCLKTYAIKRADLAPGSKGLLLEDNPSIRAISLGHGHILV 973
Query: 276 GNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL 335
G +G++ VD ++G + G G + +A HP LPI A+ D LR WD+
Sbjct: 974 GTKNGEILEVD-KSGPVTLLVQGHMEGEVWGLATHPYLPICATVSDDKTLRIWDLSPSHC 1032
Query: 336 LSAV 339
+ AV
Sbjct: 1033 MLAV 1036
Score = 40.0 bits (92), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 12/116 (10%)
Query: 230 FVAGTNDHQVRLYDTSAQRRPVMSFDFRETP-------IKAVAEEPDSFNIYIGNGSGDL 282
F G D +RL+D + +P+ D RET +++V D +I +G ++
Sbjct: 250 FATGGRDGCIRLWDLTF--KPITVIDLRETEQGYKGLSVRSVCWRGD--HILVGTQDSEI 305
Query: 283 ASVDIRT-GKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLS 337
+ + K G C G + ++A HPT P+ + D +R W + L++
Sbjct: 306 FEIVVHERNKPFLIMQGHCEGELWALAVHPTKPLAVTGSDDRSVRIWSLVDHALIA 361
Score = 32.0 bits (71), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 298 GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339
G G I +A HP+ S D +R WDI +++L+ V
Sbjct: 1699 GHVDGPIWGLATHPSRDFFLSAAEDGTVRLWDIADKKMLNKV 1740
>sp|Q54J37|STRN_DICDI Striatin homolog OS=Dictyostelium discoideum GN=strn PE=3 SV=1
Length = 827
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 74/166 (44%), Gaps = 18/166 (10%)
Query: 186 VNVWDLDKCEKIWTAKPPPKNSLGI-FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDT 244
V++W+ E+++T + +S G+ + PT S A + +++RK + ND + L+D
Sbjct: 636 VSLWNTTTSEQLYTLQ----HSNGLSYIPT---SIALPATENNRKLLTSYNDGSILLFDL 688
Query: 245 SAQR---------RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGC 295
Q+ + + + I + P G+ + D+ + ++
Sbjct: 689 ETQQIISQLKQGSSNNNNNNNNNSQINKIVSHPFMPLAMTGSEDHKIEFFDLNSNTVVHS 748
Query: 296 FIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVCS 341
I S SI S+ P+ IASC DS +RFWDI ++ + + S
Sbjct: 749 MIAH-SNSISSLTIDPSGLYIASCAHDSSIRFWDISSKTCIQDLNS 793
>sp|Q6P5M2|WDR61_DANRE WD repeat-containing protein 61 OS=Danio rerio GN=wdr61 PE=2 SV=1
Length = 305
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 76/169 (44%), Gaps = 17/169 (10%)
Query: 170 VDISEKFSLFGGKGVEVNV--WDLDKCEKIWTAKPPPKNSLGI-FTPTWFTSAAFLSIDD 226
V+IS+ ++ ++ ++ WDL+ ++I + P ++ + F+P D
Sbjct: 70 VNISQNGAIAASSSLDAHIRLWDLETGKQIKSMDAGPVDAWTVAFSP------------D 117
Query: 227 HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVD 286
+ G++ +V ++ + ++ S D R I ++A PD + G G + D
Sbjct: 118 SKYIATGSHLGKVNIFGVESGKKE-HSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFD 176
Query: 287 IRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL 335
I TGKLL G IRS+ P ++ + D Y++ +D++ L
Sbjct: 177 IATGKLLHTLEGHAM-PIRSLTFSPDSQLLVTASDDGYIKIYDVQHANL 224
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 2/108 (1%)
Query: 226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASV 285
D + +G D + ++D A + + + + PI+++ PDS + + G +
Sbjct: 159 DGKYLASGAIDGIINIFDI-ATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIY 217
Query: 286 DIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR 333
D++ L G G S + S+A P S D ++ WD +R
Sbjct: 218 DVQHANLAGTLSGHGSW-VLSVAFSPDDTHFVSSSSDKSIKVWDTSSR 264
Score = 33.5 bits (75), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 66/154 (42%), Gaps = 15/154 (9%)
Query: 184 VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DHQVRLY 242
V+V W +K E WT + + LG+ + ++I + A ++ D +RL+
Sbjct: 44 VKVWKWSDEKLELQWTLEG---HQLGVVS---------VNISQNGAIAASSSLDAHIRLW 91
Query: 243 DTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSG 302
D ++ + S D VA PDS I G+ G + + +GK +
Sbjct: 92 DLETGKQ-IKSMDAGPVDAWTVAFSPDSKYIATGSHLGKVNIFGVESGKKEHSLDTRGK- 149
Query: 303 SIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLL 336
I SIA P +AS +D + +DI T +LL
Sbjct: 150 FILSIAYSPDGKYLASGAIDGIINIFDIATGKLL 183
>sp|Q10051|PRP19_CAEEL Pre-mRNA-processing factor 19 homolog OS=Caenorhabditis elegans
GN=T10F2.4 PE=3 SV=2
Length = 492
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 76/183 (41%), Gaps = 16/183 (8%)
Query: 159 VCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTS 218
+ ++GT + +DI SL GG V ++D +K + + T K K + +
Sbjct: 206 IHSTGTPGITALDIKGNLSLTGGIDKTVVLYDYEKEQVMQTFKGHNKKINAVVLHPDNIT 265
Query: 219 AAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG 278
A S D H + + T+ + D + PV + ++ DS+
Sbjct: 266 AISASADSHIRVWSATDSSSKAIIDV--HQAPVTDISLNASGDYILSASDDSY------- 316
Query: 279 SGDLASVDIRTGKLLGCFIGKCSGS---IRSIARHPTLPIIASCGLDSYLRFWDIKTRQL 335
A DIR+GK L C + GS + SI HP I + D+ ++ WD+K + +
Sbjct: 317 ---WAFSDIRSGKSL-CKVSVEPGSQIAVHSIEFHPDGLIFGTGAADAVVKIWDLKNQTV 372
Query: 336 LSA 338
+A
Sbjct: 373 AAA 375
>sp|P41318|LST8_YEAST Target of rapamycin complex subunit LST8 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LST8 PE=1
SV=1
Length = 303
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 3/114 (2%)
Query: 222 LSIDDHRKFVAGTNDHQVRLYDT-SAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG 280
L I + +K +A VRLYD + PV SF+ + +V+ + D+ + + G
Sbjct: 38 LEITNDKKLLATAGHQNVRLYDIRTTNPNPVASFEGHRGNVTSVSFQQDNRWMVTSSEDG 97
Query: 281 DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ 334
+ D+R+ + + K + + + HP + SC D +R WD+ Q
Sbjct: 98 TIKVWDVRSPSIPRNY--KHNAPVNEVVIHPNQGELISCDRDGNIRIWDLGENQ 149
>sp|Q9LZW9|RTOR2_ARATH Regulatory-associated protein of TOR 2 OS=Arabidopsis thaliana
GN=RAPTOR2 PE=2 SV=2
Length = 1336
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 78/195 (40%), Gaps = 27/195 (13%)
Query: 152 STVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIF 211
S+++ ASG A + G+ + + VWDLDK E++ + P F
Sbjct: 1108 SSIQGQKPGASGLNAVVDWQQQSGYLYVSGESLSIMVWDLDK-EQLVKSMP--------F 1158
Query: 212 TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF---------RETPIK 262
+A S + AG D VRLYD R P DF R +
Sbjct: 1159 ESGCSVTALSASQVHGSQLAAGFADGSVRLYDV---RTP----DFLVCATRPHQRVEKVV 1211
Query: 263 AVAEEP--DSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG 320
++ +P D I + +GD+ +D+R K I GS+ ++ H PIIAS
Sbjct: 1212 GLSFQPGLDPAKIVSASQAGDIQFLDLRRPKETYLTIDAHRGSLTALGVHRHAPIIASGS 1271
Query: 321 LDSYLRFWDIKTRQL 335
++ + +K QL
Sbjct: 1272 AKQLIKVFSLKGEQL 1286
>sp|Q6ZMW3|EMAL6_HUMAN Echinoderm microtubule-associated protein-like 6 OS=Homo sapiens
GN=EML6 PE=2 SV=2
Length = 1958
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 19/134 (14%)
Query: 220 AFLSIDDHRKFVAGTNDHQVRLYD--------TSAQRRPVMS-----FDFRETP-IKAVA 265
A ++D + FV G D V L+D T A +R +S + P I+A+
Sbjct: 908 AMYALD--KGFVTGGKDGIVELWDDMFERCLKTYAIKRSALSTSSKGLLLEDNPSIRAIT 965
Query: 266 EEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYL 325
+I +G +G++ +D ++G + G G + +A HP LPI A+ D L
Sbjct: 966 --LGHGHILVGTKNGEILEID-KSGPMTLLVQGHMEGEVWGLAAHPLLPICATVSDDKTL 1022
Query: 326 RFWDIKTRQLLSAV 339
R W++ + + AV
Sbjct: 1023 RIWELSAQHRMLAV 1036
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 12/116 (10%)
Query: 230 FVAGTNDHQVRLYDTSAQRRPVMSFDFRETP-------IKAVAEEPDSFNIYIGNGSGDL 282
F G D +RL+DT +P+ D RET I++V + D + G ++
Sbjct: 250 FATGGRDGCIRLWDTDF--KPITKIDLRETEQGYKGLSIRSVCWKAD--RLLAGTQDSEI 305
Query: 283 ASVDIRT-GKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLS 337
V +R K + G C G + ++A HP P+ + D +R W + L++
Sbjct: 306 FEVIVRERDKPMLILQGHCEGELWALALHPKKPLAVTGSDDRSVRLWSLADHALIA 361
Score = 33.1 bits (74), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 29/67 (43%)
Query: 273 IYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332
I +G G++ V + G G I +A HP+ + S D R WD+
Sbjct: 1659 ILVGTKDGEIIEVGEKNAASNILIDGHMEGEIWGLATHPSKDLFISASNDGTARIWDLAD 1718
Query: 333 RQLLSAV 339
++LL+ V
Sbjct: 1719 KKLLNKV 1725
>sp|Q9D994|WDR38_MOUSE WD repeat-containing protein 38 OS=Mus musculus GN=Wdr38 PE=2 SV=1
Length = 303
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 52/106 (49%), Gaps = 2/106 (1%)
Query: 226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASV 285
D R + ++DH +RL+D A+ + + + ++ V+ PDS + G
Sbjct: 79 DGRLIASSSSDHSIRLWDV-ARSKCLHVLKGHQRSVETVSFSPDSKQLASGGWDKRAIVW 137
Query: 286 DIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331
++++G+ + +G C SI+S PT +A+ DS + WD++
Sbjct: 138 EVQSGRRVHLLVGHCD-SIQSSDFSPTSDSLATGSWDSTVHIWDLR 182
>sp|Q54D08|LST8_DICDI Protein LST8 homolog OS=Dictyostelium discoideum GN=lst8 PE=1 SV=1
Length = 304
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 10/122 (8%)
Query: 222 LSIDDHRKFVAGTNDHQVRLYDTSAQRR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGSG 280
L I + ++A + Q RL++ + P MSFD + + V + + +Y G+ G
Sbjct: 39 LEITHDKLYIAAAGNPQTRLFEVNTNNNSPAMSFDGHKGNVTGVGFQKEGKWMYTGSEDG 98
Query: 281 DLASVDIRTGKLLGCFIG-KCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339
+ D+ K GC +CS + ++ HP + S + +R WD L+S
Sbjct: 99 TVKIWDL---KAPGCQRDYECSAPVNTVVLHPNQAELISGDQNGSIRVWD-----LISNT 150
Query: 340 CS 341
CS
Sbjct: 151 CS 152
>sp|Q5ZIU8|KTNB1_CHICK Katanin p80 WD40 repeat-containing subunit B1 OS=Gallus gallus
GN=KATNB1 PE=2 SV=2
Length = 657
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 77/176 (43%), Gaps = 23/176 (13%)
Query: 169 KVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR 228
++ E+ + G + + VWDL+ + + T LG A S+D H
Sbjct: 70 QISAKEELIVAGSQSGSIRVWDLEAAKILRTL-------LG-------HKANICSLDFHP 115
Query: 229 --KFVA-GTNDHQVRLYDTSAQRRPVMSFDFRE--TPIKAVAEEPDSFNIYIGNGSGDLA 283
FVA G+ D ++L+D RR F ++ ++ + PD + +
Sbjct: 116 YGSFVASGSLDTDIKLWDV---RRKGCIFKYKSHTQAVRCLRFSPDGKWLASAADDHTVK 172
Query: 284 SVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339
D+ GK++ F G SG + + HP+ ++AS D +RFWD++ ++S +
Sbjct: 173 LWDLTAGKVMFEFTGH-SGPVNVVEFHPSEYLLASGSSDRTIRFWDLEKFHVVSCI 227
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 228 RKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDI 287
R G +D +V ++ + + VMS TPI+++ I G+ SG + D+
Sbjct: 34 RLLATGGDDCRVNVWSVN-KPNCVMSLTGHTTPIESLQISAKEELIVAGSQSGSIRVWDL 92
Query: 288 RTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR 333
K+L +G +I S+ HP +AS LD+ ++ WD++ +
Sbjct: 93 EAAKILRTLLGH-KANICSLDFHPYGSFVASGSLDTDIKLWDVRRK 137
>sp|Q6NVM2|KTNB1_XENTR Katanin p80 WD40 repeat-containing subunit B1 OS=Xenopus tropicalis
GN=katnb1 PE=2 SV=1
Length = 655
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 2/116 (1%)
Query: 218 SAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN 277
S+ L R G +D +V L+ + + +MS TP+++V I G+
Sbjct: 24 SSVVLGKSSGRLVATGGDDCRVNLWSVN-KPNCIMSLTGHTTPVESVRFNNAEELIVAGS 82
Query: 278 GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR 333
SG L D+ K+L +G ++ S+ HP +AS LD+ ++ WD++ +
Sbjct: 83 QSGSLRVWDLEAAKILRTLMGH-KANVCSLDFHPYGDFVASGSLDTNIKLWDVRRK 137
Score = 39.3 bits (90), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 74/169 (43%), Gaps = 23/169 (13%)
Query: 173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR--KF 230
+E+ + G + + VWDL+ + + T +G A S+D H F
Sbjct: 74 AEELIVAGSQSGSLRVWDLEAAKILRTL-------MG-------HKANVCSLDFHPYGDF 119
Query: 231 VA-GTNDHQVRLYDTSAQRRPVMSFDFR--ETPIKAVAEEPDSFNIYIGNGSGDLASVDI 287
VA G+ D ++L+D RR F ++ ++ + PD + + + D+
Sbjct: 120 VASGSLDTNIKLWDV---RRKGCVFRYKGHTQAVRCLRFSPDGKWLASASDDHSVKLWDL 176
Query: 288 RTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLL 336
GK++ + + G + I HP ++AS D +RFWD++ QL+
Sbjct: 177 TAGKMMA-ELSEHKGPVNIIEFHPNEYLLASGSADRTVRFWDLEKFQLI 224
>sp|Q8VEJ4|NLE1_MOUSE Notchless protein homolog 1 OS=Mus musculus GN=Nle1 PE=2 SV=4
Length = 485
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Query: 229 KFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR 288
+ V+G++D + L+ + ++P+ + I V PDS + + + D R
Sbjct: 343 RLVSGSDDFTLFLWSPAEDKKPLARMTGHQALINQVLFSPDSRIVASASFDKSIKLWDGR 402
Query: 289 TGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL 335
TGK L G + ++ IA ++ S DS L+ WD+K ++L
Sbjct: 403 TGKYLASLRGHVA-AVYQIAWSADSRLLVSGSSDSTLKVWDVKAQKL 448
>sp|Q9NVX2|NLE1_HUMAN Notchless protein homolog 1 OS=Homo sapiens GN=NLE1 PE=1 SV=4
Length = 485
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Query: 229 KFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR 288
+ V+G++D + L+ + ++P+ + I V PDS + + + D R
Sbjct: 343 RLVSGSDDFTLFLWSPAEDKKPLTRMTGHQALINQVLFSPDSRIVASASFDKSIKLWDGR 402
Query: 289 TGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL 335
TGK L G + ++ IA ++ S DS L+ WD+K ++L
Sbjct: 403 TGKYLASLRGHVA-AVYQIAWSADSRLLVSGSSDSTLKVWDVKAQKL 448
>sp|Q5RFF8|NLE1_PONAB Notchless protein homolog 1 OS=Pongo abelii GN=NLE1 PE=2 SV=3
Length = 485
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Query: 229 KFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR 288
+ V+G++D + L+ + ++P+ + I V PDS + + + D R
Sbjct: 343 RLVSGSDDFTLFLWSPAEDKKPLTRMTGHQALINQVLFSPDSRIVASASFDKSIKLWDGR 402
Query: 289 TGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL 335
TGK L G + ++ IA ++ S DS L+ WD+K ++L
Sbjct: 403 TGKYLASLRGHVA-AVYQIAWSADSRLLVSGSSDSTLKVWDVKAQKL 448
>sp|Q09715|TUP11_SCHPO Transcriptional repressor tup11 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=tup11 PE=1 SV=1
Length = 614
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 82/208 (39%), Gaps = 49/208 (23%)
Query: 145 VSAESSCSTVKSWNVCASGTIAFSKVDISEKFS-----LFGGKGVEVNVWDLDKCEKIWT 199
V+ +C V +N+ T+ V KFS L G NV+D+ +K++T
Sbjct: 292 VTYNPACKRV--FNINLVHTLEHPSVVCCVKFSNNGKYLATGCNQAANVFDVQTGKKLFT 349
Query: 200 ---AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR-RPVMSFD 255
P P L + T + +L V GT D Q++L+D S Q+ R V S
Sbjct: 350 LHEESPDPSRDLYVRTIAFSPDGKYL--------VTGTEDRQIKLWDLSTQKVRYVFS-- 399
Query: 256 FRETPIKAVAEEPDSFNI-------YIGNGSGDLASVDIRTGKLLGCFIGKC------SG 302
E D +++ +I +GSGD RT +L G+C
Sbjct: 400 ---------GHEQDIYSLDFSHNGRFIVSGSGD------RTARLWDVETGQCILKLEIEN 444
Query: 303 SIRSIARHPTLPIIASCGLDSYLRFWDI 330
+ +IA P IA LD +R W +
Sbjct: 445 GVTAIAISPNDQFIAVGSLDQIIRVWSV 472
>sp|Q6PBD6|WDR61_XENTR WD repeat-containing protein 61 OS=Xenopus tropicalis GN=wdr61 PE=2
SV=1
Length = 305
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 73/169 (43%), Gaps = 17/169 (10%)
Query: 170 VDISEKFSLFGGKGVEVNV--WDLDKCEKIWTAKPPPKNSLGI-FTPTWFTSAAFLSIDD 226
VD+S ++ ++ ++ WDL+ ++I P ++ + F+P D
Sbjct: 70 VDVSPSGNIMASSSLDAHIRLWDLESGKQIRAIDAGPVDAWSVAFSP------------D 117
Query: 227 HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVD 286
+ G++ +V ++ ++ S D R I ++A PD + G G + D
Sbjct: 118 SQHLATGSHVGKVNIFGVETGKKE-YSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFD 176
Query: 287 IRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL 335
I TGKLL G IRS+ P ++ + D Y++ ++++ L
Sbjct: 177 IATGKLLHTLEGHAM-PIRSLTFSPDSQLLVTASDDGYIKIYEVQHASL 224
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 128,487,992
Number of Sequences: 539616
Number of extensions: 5300771
Number of successful extensions: 14592
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 222
Number of HSP's that attempted gapping in prelim test: 14104
Number of HSP's gapped (non-prelim): 671
length of query: 341
length of database: 191,569,459
effective HSP length: 118
effective length of query: 223
effective length of database: 127,894,771
effective search space: 28520533933
effective search space used: 28520533933
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)