Query 019405
Match_columns 341
No_of_seqs 518 out of 1988
Neff 11.6
Searched_HMMs 46136
Date Fri Mar 29 09:12:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019405.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019405hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 7.8E-46 1.7E-50 289.6 24.4 286 14-339 127-447 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 7.2E-45 1.6E-49 287.4 21.4 273 12-329 185-458 (459)
3 KOG0272 U4/U6 small nuclear ri 100.0 8.3E-43 1.8E-47 275.7 18.8 252 47-339 173-426 (459)
4 KOG0271 Notchless-like WD40 re 100.0 5.5E-41 1.2E-45 262.5 21.0 257 41-339 107-405 (480)
5 KOG0315 G-protein beta subunit 100.0 6.4E-39 1.4E-43 237.4 29.6 280 12-338 8-295 (311)
6 KOG0279 G protein beta subunit 100.0 2.3E-38 5.1E-43 238.0 28.7 276 14-331 28-313 (315)
7 KOG0286 G-protein beta subunit 100.0 3.8E-38 8.3E-43 238.4 29.5 269 13-329 66-343 (343)
8 KOG0279 G protein beta subunit 100.0 1.8E-37 3.9E-42 233.3 26.9 259 41-339 7-270 (315)
9 KOG0284 Polyadenylation factor 100.0 3.1E-39 6.7E-44 254.6 16.2 270 15-330 109-379 (464)
10 KOG0263 Transcription initiati 100.0 2.4E-38 5.3E-43 268.7 22.9 258 42-334 371-652 (707)
11 KOG0295 WD40 repeat-containing 100.0 6.6E-38 1.4E-42 243.7 20.9 280 17-340 79-373 (406)
12 KOG0273 Beta-transducin family 100.0 1.5E-36 3.3E-41 243.5 28.5 268 14-331 247-523 (524)
13 KOG0295 WD40 repeat-containing 100.0 6.1E-37 1.3E-41 238.3 24.5 269 17-330 123-405 (406)
14 KOG0291 WD40-repeat-containing 100.0 1.3E-35 2.7E-40 250.9 31.1 277 18-339 324-620 (893)
15 KOG0286 G-protein beta subunit 100.0 3.9E-35 8.5E-40 222.1 28.9 260 43-340 49-312 (343)
16 KOG0318 WD40 repeat stress pro 100.0 6.3E-35 1.4E-39 237.3 32.1 298 12-333 158-562 (603)
17 KOG0319 WD40-repeat-containing 100.0 9.7E-36 2.1E-40 250.9 27.7 306 15-339 118-585 (775)
18 KOG0281 Beta-TrCP (transducin 100.0 7.4E-38 1.6E-42 242.5 12.6 268 11-334 204-480 (499)
19 KOG0273 Beta-transducin family 100.0 4.7E-35 1E-39 235.0 26.5 277 19-339 196-490 (524)
20 KOG0285 Pleiotropic regulator 100.0 5E-36 1.1E-40 233.0 20.2 257 39-339 141-397 (460)
21 KOG0296 Angio-associated migra 100.0 2.1E-34 4.5E-39 224.4 26.6 278 16-331 78-398 (399)
22 KOG0315 G-protein beta subunit 100.0 5.4E-34 1.2E-38 211.3 25.2 255 17-309 54-308 (311)
23 KOG0319 WD40-repeat-containing 100.0 3.4E-34 7.4E-39 241.7 24.1 275 16-332 338-620 (775)
24 KOG0276 Vesicle coat complex C 100.0 2.2E-34 4.8E-39 238.8 22.4 255 44-339 8-265 (794)
25 KOG0284 Polyadenylation factor 100.0 1.1E-35 2.3E-40 234.6 13.9 247 50-338 97-344 (464)
26 KOG0282 mRNA splicing factor [ 100.0 4.9E-35 1.1E-39 235.6 17.0 270 16-329 229-503 (503)
27 cd00200 WD40 WD40 domain, foun 100.0 2.3E-32 5.1E-37 225.2 32.8 268 15-329 22-289 (289)
28 KOG0293 WD40 repeat-containing 100.0 8.1E-34 1.8E-38 224.5 21.9 272 17-332 239-514 (519)
29 KOG0316 Conserved WD40 repeat- 100.0 1.1E-33 2.4E-38 208.1 21.0 251 43-339 11-265 (307)
30 KOG0265 U5 snRNP-specific prot 100.0 5.5E-33 1.2E-37 211.2 25.2 268 16-328 61-335 (338)
31 KOG0318 WD40 repeat stress pro 100.0 2.8E-32 6E-37 222.0 30.5 291 14-331 202-602 (603)
32 KOG0285 Pleiotropic regulator 100.0 7.7E-33 1.7E-37 215.3 24.3 269 15-331 164-439 (460)
33 KOG0266 WD40 repeat-containing 100.0 2.4E-32 5.2E-37 236.8 29.8 253 48-339 158-417 (456)
34 KOG0313 Microtubule binding pr 100.0 2.9E-32 6.3E-37 213.5 26.7 285 12-331 113-418 (423)
35 KOG0263 Transcription initiati 100.0 2.8E-33 6.1E-38 238.1 21.7 262 16-319 392-703 (707)
36 KOG0266 WD40 repeat-containing 100.0 5.6E-32 1.2E-36 234.5 29.4 273 17-331 174-454 (456)
37 KOG0291 WD40-repeat-containing 100.0 1.8E-31 3.9E-36 226.0 30.4 275 17-338 280-557 (893)
38 KOG0276 Vesicle coat complex C 100.0 2.8E-32 6E-37 226.4 24.6 268 16-327 27-295 (794)
39 cd00200 WD40 WD40 domain, foun 100.0 5.2E-31 1.1E-35 217.2 31.6 254 44-339 4-257 (289)
40 PLN00181 protein SPA1-RELATED; 100.0 7.2E-31 1.6E-35 243.7 36.0 275 15-330 496-792 (793)
41 PLN00181 protein SPA1-RELATED; 100.0 4.7E-31 1E-35 245.0 33.5 277 23-335 457-742 (793)
42 KOG0265 U5 snRNP-specific prot 100.0 1.5E-31 3.2E-36 203.5 23.6 258 40-339 38-304 (338)
43 KOG0274 Cdc4 and related F-box 100.0 1.6E-31 3.5E-36 231.1 27.1 272 14-339 218-490 (537)
44 KOG0316 Conserved WD40 repeat- 100.0 1.3E-31 2.7E-36 197.3 22.0 265 16-330 31-298 (307)
45 KOG0306 WD40-repeat-containing 100.0 4E-31 8.8E-36 223.7 27.9 271 22-332 392-665 (888)
46 KOG0645 WD40 repeat protein [G 100.0 1E-30 2.2E-35 196.3 26.8 270 16-331 29-311 (312)
47 KOG0277 Peroxisomal targeting 100.0 1.6E-31 3.4E-36 198.9 20.1 267 23-330 37-308 (311)
48 KOG0281 Beta-TrCP (transducin 100.0 3E-33 6.4E-38 217.1 11.3 233 48-334 196-431 (499)
49 KOG0643 Translation initiation 100.0 2.7E-30 5.8E-35 193.7 24.9 248 44-333 5-319 (327)
50 KOG0282 mRNA splicing factor [ 100.0 3.1E-32 6.8E-37 219.5 15.0 258 40-339 205-470 (503)
51 KOG1446 Histone H3 (Lys4) meth 100.0 2.5E-29 5.4E-34 193.0 29.9 258 40-339 5-270 (311)
52 KOG0306 WD40-repeat-containing 100.0 2.5E-30 5.4E-35 219.0 26.2 292 8-340 330-631 (888)
53 KOG0292 Vesicle coat complex C 100.0 2E-30 4.4E-35 223.2 25.7 280 15-332 22-322 (1202)
54 KOG1407 WD40 repeat protein [F 100.0 5.9E-30 1.3E-34 191.2 23.5 255 44-339 15-269 (313)
55 KOG0268 Sof1-like rRNA process 100.0 1.5E-31 3.3E-36 208.4 15.4 271 16-338 81-352 (433)
56 KOG0275 Conserved WD40 repeat- 100.0 7.3E-32 1.6E-36 207.7 13.3 248 49-329 213-507 (508)
57 KOG0313 Microtubule binding pr 100.0 5.9E-30 1.3E-34 200.6 23.5 250 65-339 115-385 (423)
58 KOG0296 Angio-associated migra 100.0 1.2E-29 2.6E-34 198.0 24.3 253 42-339 57-364 (399)
59 KOG0292 Vesicle coat complex C 100.0 4E-30 8.7E-35 221.4 23.1 250 48-339 8-288 (1202)
60 KOG0305 Anaphase promoting com 100.0 4.5E-29 9.7E-34 208.6 26.2 264 22-332 195-462 (484)
61 KOG0278 Serine/threonine kinas 100.0 2.7E-30 5.9E-35 192.0 16.3 270 17-336 32-302 (334)
62 KOG0283 WD40 repeat-containing 100.0 3.8E-29 8.2E-34 214.7 24.3 254 43-332 260-577 (712)
63 KOG0277 Peroxisomal targeting 100.0 1.9E-29 4.1E-34 187.9 19.4 248 51-334 10-268 (311)
64 KOG1407 WD40 repeat protein [F 100.0 3.3E-28 7.2E-33 181.9 26.1 273 10-331 28-311 (313)
65 KOG0288 WD40 repeat protein Ti 100.0 6.7E-30 1.4E-34 202.3 17.2 266 15-328 188-458 (459)
66 KOG0289 mRNA splicing factor [ 100.0 5.5E-28 1.2E-32 192.8 26.8 270 15-330 232-505 (506)
67 KOG0294 WD40 repeat-containing 100.0 6.9E-28 1.5E-32 184.8 26.2 273 15-333 2-283 (362)
68 KOG0640 mRNA cleavage stimulat 100.0 5.4E-29 1.2E-33 190.7 19.6 259 45-331 108-426 (430)
69 PTZ00421 coronin; Provisional 100.0 2.5E-27 5.5E-32 204.9 31.9 262 52-338 23-297 (493)
70 KOG0645 WD40 repeat protein [G 100.0 2.1E-27 4.5E-32 178.6 27.0 248 42-332 7-262 (312)
71 KOG0310 Conserved WD40 repeat- 100.0 7E-28 1.5E-32 194.8 25.9 245 43-330 62-308 (487)
72 KOG0308 Conserved WD40 repeat- 100.0 6.9E-29 1.5E-33 207.1 19.9 290 9-331 31-327 (735)
73 KOG0772 Uncharacterized conser 100.0 1.6E-28 3.5E-33 199.9 21.2 288 13-329 178-485 (641)
74 KOG0308 Conserved WD40 repeat- 100.0 9.1E-29 2E-33 206.4 20.2 246 61-333 33-287 (735)
75 PTZ00420 coronin; Provisional 100.0 4.8E-27 1E-31 204.2 31.4 261 22-314 52-319 (568)
76 PTZ00421 coronin; Provisional 100.0 5.9E-27 1.3E-31 202.6 31.9 232 44-313 70-315 (493)
77 KOG1539 WD repeat protein [Gen 100.0 2.7E-27 5.8E-32 202.8 27.8 290 15-339 173-614 (910)
78 KOG0289 mRNA splicing factor [ 100.0 1.1E-27 2.5E-32 191.0 22.6 230 66-330 232-461 (506)
79 KOG0264 Nucleosome remodeling 100.0 1.1E-27 2.3E-32 192.2 22.4 261 48-331 123-404 (422)
80 KOG0274 Cdc4 and related F-box 100.0 1.1E-27 2.4E-32 207.4 23.8 241 49-340 208-450 (537)
81 PTZ00420 coronin; Provisional 100.0 2.8E-26 6.1E-31 199.4 30.7 235 71-334 50-296 (568)
82 KOG0310 Conserved WD40 repeat- 100.0 2.6E-27 5.7E-32 191.5 22.4 250 48-339 25-276 (487)
83 KOG0300 WD40 repeat-containing 100.0 2.7E-27 5.9E-32 182.1 20.5 265 40-339 139-435 (481)
84 KOG0647 mRNA export protein (c 100.0 7.5E-27 1.6E-31 178.2 22.6 250 47-338 25-288 (347)
85 KOG1539 WD repeat protein [Gen 100.0 1.4E-26 2.9E-31 198.6 26.5 290 12-331 211-648 (910)
86 KOG0293 WD40 repeat-containing 100.0 2.5E-27 5.5E-32 187.9 19.9 256 43-339 218-478 (519)
87 KOG1446 Histone H3 (Lys4) meth 100.0 4.2E-25 9.2E-30 169.9 30.2 272 14-332 26-304 (311)
88 KOG1408 WD40 repeat protein [F 100.0 7.7E-27 1.7E-31 197.2 22.1 287 13-332 391-714 (1080)
89 KOG0275 Conserved WD40 repeat- 100.0 5.7E-29 1.2E-33 191.8 7.1 174 162-340 213-387 (508)
90 KOG0973 Histone transcription 100.0 4.1E-26 9E-31 201.1 25.6 291 15-333 26-357 (942)
91 KOG0288 WD40 repeat protein Ti 100.0 3.2E-27 6.9E-32 187.3 15.8 251 44-339 170-425 (459)
92 KOG0643 Translation initiation 100.0 1.9E-25 4.1E-30 167.8 23.7 211 100-340 7-229 (327)
93 KOG0646 WD40 repeat protein [G 100.0 4.7E-26 1E-30 183.3 21.6 269 24-339 18-315 (476)
94 KOG0299 U3 snoRNP-associated p 100.0 9.2E-26 2E-30 181.4 23.1 269 15-328 155-453 (479)
95 KOG1036 Mitotic spindle checkp 100.0 2.8E-25 6E-30 170.2 24.4 256 15-320 26-293 (323)
96 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 4.3E-24 9.3E-29 177.7 33.8 271 17-339 4-287 (300)
97 KOG0299 U3 snoRNP-associated p 99.9 1.3E-25 2.8E-30 180.5 23.1 256 43-333 136-412 (479)
98 KOG1036 Mitotic spindle checkp 99.9 2.4E-25 5.2E-30 170.5 23.4 246 48-339 12-270 (323)
99 KOG0301 Phospholipase A2-activ 99.9 2.2E-25 4.7E-30 187.7 25.1 265 13-332 24-289 (745)
100 KOG1332 Vesicle coat complex C 99.9 8.1E-26 1.8E-30 167.7 19.5 241 15-331 24-286 (299)
101 KOG0283 WD40 repeat-containing 99.9 7.9E-26 1.7E-30 194.4 21.8 212 43-288 363-576 (712)
102 KOG0640 mRNA cleavage stimulat 99.9 1.8E-26 3.9E-31 176.9 16.0 205 125-339 126-343 (430)
103 KOG0278 Serine/threonine kinas 99.9 1.1E-26 2.3E-31 173.0 14.2 228 15-292 72-301 (334)
104 KOG3881 Uncharacterized conser 99.9 3.4E-25 7.4E-30 174.8 23.2 305 15-340 17-329 (412)
105 KOG0647 mRNA export protein (c 99.9 1.1E-24 2.5E-29 166.3 25.0 259 17-319 43-311 (347)
106 KOG0268 Sof1-like rRNA process 99.9 1.1E-26 2.4E-31 181.5 13.4 247 41-335 58-306 (433)
107 KOG0641 WD40 repeat protein [G 99.9 1E-23 2.3E-28 155.1 27.8 257 46-331 86-349 (350)
108 KOG0772 Uncharacterized conser 99.9 1.8E-25 3.9E-30 182.3 20.5 274 44-339 162-453 (641)
109 KOG2096 WD40 repeat protein [G 99.9 8E-25 1.7E-29 168.5 22.2 255 43-329 80-400 (420)
110 KOG0646 WD40 repeat protein [G 99.9 4.2E-25 9.1E-30 177.9 21.0 251 25-314 62-332 (476)
111 KOG0301 Phospholipase A2-activ 99.9 4E-25 8.7E-30 186.1 21.7 250 40-339 5-255 (745)
112 KOG1274 WD40 repeat protein [G 99.9 2.2E-24 4.7E-29 187.1 26.6 243 47-332 11-263 (933)
113 KOG0269 WD40 repeat-containing 99.9 1.2E-25 2.5E-30 191.5 17.9 192 124-333 101-298 (839)
114 KOG2106 Uncharacterized conser 99.9 2E-23 4.4E-28 170.0 29.9 273 17-330 215-520 (626)
115 KOG1408 WD40 repeat protein [F 99.9 1E-24 2.2E-29 184.6 22.6 258 66-340 271-680 (1080)
116 KOG0300 WD40 repeat-containing 99.9 5.1E-24 1.1E-28 164.2 20.8 277 17-334 163-479 (481)
117 KOG2445 Nuclear pore complex c 99.9 2.6E-23 5.6E-28 159.4 24.4 262 47-331 11-318 (361)
118 KOG0973 Histone transcription 99.9 6.9E-24 1.5E-28 187.2 24.3 271 44-338 7-319 (942)
119 KOG0294 WD40 repeat-containing 99.9 1.2E-23 2.5E-28 161.8 22.2 255 6-310 45-306 (362)
120 KOG0305 Anaphase promoting com 99.9 8.2E-24 1.8E-28 177.3 23.3 232 67-339 190-427 (484)
121 KOG0269 WD40 repeat-containing 99.9 2E-24 4.4E-29 184.0 19.8 270 23-333 59-342 (839)
122 KOG0641 WD40 repeat protein [G 99.9 2.7E-22 5.9E-27 147.6 27.7 252 48-331 31-303 (350)
123 KOG0267 Microtubule severing p 99.9 4.9E-26 1.1E-30 192.4 8.8 228 67-338 6-233 (825)
124 KOG0321 WD40 repeat-containing 99.9 2.1E-23 4.5E-28 174.3 23.9 302 10-334 58-394 (720)
125 KOG0650 WD40 repeat nucleolar 99.9 3.9E-24 8.4E-29 177.5 19.4 263 43-328 394-732 (733)
126 KOG0270 WD40 repeat-containing 99.9 1.1E-23 2.4E-28 168.8 20.1 246 63-338 190-456 (463)
127 KOG1034 Transcriptional repres 99.9 3.4E-23 7.4E-28 160.1 21.5 287 16-331 56-383 (385)
128 KOG0639 Transducin-like enhanc 99.9 2.7E-24 5.8E-29 175.1 15.9 250 48-338 418-670 (705)
129 KOG4283 Transcription-coupled 99.9 5.7E-23 1.2E-27 156.8 21.7 214 47-291 41-279 (397)
130 KOG0639 Transducin-like enhanc 99.9 2.1E-23 4.6E-28 169.9 19.3 269 16-330 433-703 (705)
131 KOG0264 Nucleosome remodeling 99.9 1.3E-23 2.8E-28 168.9 17.9 218 102-332 123-348 (422)
132 KOG2106 Uncharacterized conser 99.9 8.3E-22 1.8E-26 160.7 28.4 231 13-287 256-520 (626)
133 KOG4283 Transcription-coupled 99.9 4.2E-23 9.2E-28 157.5 19.0 218 100-335 40-280 (397)
134 KOG0302 Ribosome Assembly prot 99.9 5.6E-23 1.2E-27 161.6 20.1 237 14-329 165-436 (440)
135 KOG2048 WD40 repeat protein [G 99.9 5.3E-22 1.2E-26 167.0 26.8 246 48-334 24-278 (691)
136 KOG0307 Vesicle coat complex C 99.9 1E-23 2.2E-28 187.2 16.8 285 21-334 36-330 (1049)
137 KOG2055 WD40 repeat protein [G 99.9 1.5E-22 3.3E-27 163.1 22.0 273 17-331 228-512 (514)
138 KOG2048 WD40 repeat protein [G 99.9 1.5E-21 3.3E-26 164.3 27.4 278 15-331 38-319 (691)
139 KOG1274 WD40 repeat protein [G 99.9 2.3E-21 5.1E-26 168.5 28.4 267 14-324 25-293 (933)
140 KOG0267 Microtubule severing p 99.9 2.9E-24 6.2E-29 181.8 10.3 237 45-323 24-260 (825)
141 KOG0322 G-protein beta subunit 99.9 2.3E-22 5E-27 151.1 18.1 266 41-330 6-322 (323)
142 KOG4328 WD40 protein [Function 99.9 1.1E-21 2.3E-26 158.1 23.1 284 15-332 201-496 (498)
143 KOG1273 WD40 repeat protein [G 99.9 9.6E-22 2.1E-26 151.4 20.8 273 17-332 38-323 (405)
144 KOG0302 Ribosome Assembly prot 99.9 5.9E-22 1.3E-26 155.9 19.3 198 125-332 167-379 (440)
145 KOG2445 Nuclear pore complex c 99.9 3.3E-21 7.1E-26 148.0 22.7 270 14-311 25-342 (361)
146 KOG4378 Nuclear protein COP1 [ 99.9 5.2E-22 1.1E-26 161.6 19.4 275 17-334 5-283 (673)
147 KOG1063 RNA polymerase II elon 99.9 3.2E-21 7E-26 162.8 24.5 297 24-333 166-650 (764)
148 KOG1332 Vesicle coat complex C 99.9 3.8E-22 8.2E-27 148.3 15.2 193 125-331 25-241 (299)
149 KOG4378 Nuclear protein COP1 [ 99.9 4.1E-21 8.9E-26 156.4 21.0 211 67-313 93-305 (673)
150 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.1E-19 2.3E-24 151.3 30.4 233 66-339 2-245 (300)
151 KOG0270 WD40 repeat-containing 99.9 8.3E-21 1.8E-25 152.5 20.6 217 104-333 174-406 (463)
152 KOG4328 WD40 protein [Function 99.9 1.7E-20 3.6E-25 151.3 21.4 260 48-340 185-459 (498)
153 KOG1188 WD40 repeat protein [G 99.9 1.6E-20 3.5E-25 146.1 19.9 280 16-331 42-346 (376)
154 KOG2055 WD40 repeat protein [G 99.9 4.6E-20 1E-24 148.9 21.8 248 49-334 213-470 (514)
155 KOG2919 Guanine nucleotide-bin 99.9 4.7E-20 1E-24 142.7 20.1 262 61-334 57-331 (406)
156 KOG1445 Tumor-specific antigen 99.9 1.7E-20 3.7E-25 157.3 18.7 117 216-334 630-753 (1012)
157 KOG1063 RNA polymerase II elon 99.9 2.3E-19 5.1E-24 151.7 25.3 284 15-331 280-699 (764)
158 KOG1007 WD repeat protein TSSC 99.9 1.1E-19 2.3E-24 138.6 19.6 287 15-332 27-362 (370)
159 KOG2096 WD40 repeat protein [G 99.9 8.7E-20 1.9E-24 141.0 18.8 214 101-332 84-309 (420)
160 KOG0642 Cell-cycle nuclear pro 99.9 1.5E-20 3.3E-25 155.3 14.7 269 39-338 284-568 (577)
161 KOG1009 Chromatin assembly com 99.9 2.7E-19 5.9E-24 142.4 20.9 295 16-334 28-375 (434)
162 KOG0307 Vesicle coat complex C 99.9 7.1E-21 1.5E-25 169.3 12.9 221 103-340 64-293 (1049)
163 KOG0290 Conserved WD40 repeat- 99.8 1.3E-18 2.8E-23 132.9 22.6 274 24-327 73-361 (364)
164 KOG0321 WD40 repeat-containing 99.8 2E-19 4.2E-24 150.8 19.1 252 14-290 112-393 (720)
165 KOG1273 WD40 repeat protein [G 99.8 1.1E-18 2.4E-23 134.7 21.6 250 52-339 26-288 (405)
166 KOG2919 Guanine nucleotide-bin 99.8 7.5E-19 1.6E-23 136.1 20.0 277 16-322 63-361 (406)
167 KOG1587 Cytoplasmic dynein int 99.8 3E-18 6.5E-23 148.0 25.6 285 24-332 222-517 (555)
168 KOG0649 WD40 repeat protein [G 99.8 2.5E-18 5.5E-23 128.1 21.7 241 57-331 14-274 (325)
169 KOG1517 Guanine nucleotide bin 99.8 1.2E-18 2.6E-23 154.0 23.3 250 63-337 1074-1338(1387)
170 KOG1538 Uncharacterized conser 99.8 6.4E-19 1.4E-23 148.9 20.3 278 5-332 5-294 (1081)
171 KOG1517 Guanine nucleotide bin 99.8 1.4E-18 3.1E-23 153.6 23.1 283 17-334 1079-1384(1387)
172 PRK11028 6-phosphogluconolacto 99.8 2.2E-16 4.7E-21 132.9 33.2 279 18-331 6-304 (330)
173 KOG0771 Prolactin regulatory e 99.8 5.8E-19 1.3E-23 141.3 16.4 189 125-332 158-355 (398)
174 KOG0642 Cell-cycle nuclear pro 99.8 2.9E-19 6.3E-24 147.8 14.9 256 16-299 308-572 (577)
175 KOG2110 Uncharacterized conser 99.8 7.2E-17 1.6E-21 127.3 27.1 163 159-333 84-250 (391)
176 KOG1007 WD repeat protein TSSC 99.8 1.9E-18 4E-23 131.9 16.3 192 134-332 94-290 (370)
177 KOG0290 Conserved WD40 repeat- 99.8 1.1E-17 2.4E-22 127.8 18.9 260 50-333 45-320 (364)
178 COG2319 FOG: WD40 repeat [Gene 99.8 2.2E-15 4.7E-20 131.4 34.4 274 16-334 79-362 (466)
179 KOG1034 Transcriptional repres 99.8 1.8E-18 3.9E-23 134.2 12.6 248 17-288 108-383 (385)
180 KOG0303 Actin-binding protein 99.8 7.8E-17 1.7E-21 128.2 22.1 213 44-334 76-297 (472)
181 KOG1524 WD40 repeat-containing 99.8 1.3E-17 2.8E-22 137.6 17.7 207 67-328 77-283 (737)
182 KOG1188 WD40 repeat protein [G 99.8 5.4E-17 1.2E-21 126.7 20.0 201 67-296 42-250 (376)
183 KOG1240 Protein kinase contain 99.8 2.1E-16 4.5E-21 142.2 24.5 287 15-329 1062-1431(1431)
184 COG2319 FOG: WD40 repeat [Gene 99.8 3.4E-15 7.4E-20 130.1 31.8 255 45-338 61-321 (466)
185 KOG0322 G-protein beta subunit 99.8 2.8E-17 6E-22 124.0 15.7 245 14-287 25-322 (323)
186 KOG1524 WD40 repeat-containing 99.8 4.7E-17 1E-21 134.3 18.4 247 48-335 13-259 (737)
187 KOG0649 WD40 repeat protein [G 99.8 1.2E-14 2.6E-19 108.8 29.2 278 16-328 24-313 (325)
188 KOG0303 Actin-binding protein 99.8 1E-17 2.2E-22 133.2 13.3 168 160-332 79-250 (472)
189 KOG2111 Uncharacterized conser 99.8 1.2E-15 2.7E-20 118.2 24.4 238 54-333 10-258 (346)
190 KOG4227 WD40 repeat protein [G 99.8 9.5E-17 2.1E-21 127.8 18.5 250 45-330 52-386 (609)
191 KOG0644 Uncharacterized conser 99.8 5.6E-18 1.2E-22 146.5 10.6 260 43-337 184-474 (1113)
192 KOG1240 Protein kinase contain 99.7 7.7E-16 1.7E-20 138.5 23.7 271 40-334 1039-1337(1431)
193 KOG2110 Uncharacterized conser 99.7 2.5E-14 5.5E-19 113.1 29.4 264 19-332 22-331 (391)
194 KOG1963 WD40 repeat protein [G 99.7 1.7E-15 3.7E-20 132.0 25.1 287 17-336 30-327 (792)
195 KOG1009 Chromatin assembly com 99.7 3.8E-17 8.1E-22 130.3 13.0 172 161-338 12-202 (434)
196 KOG1334 WD40 repeat protein [G 99.7 4E-17 8.6E-22 133.2 13.1 268 43-333 136-468 (559)
197 KOG1587 Cytoplasmic dynein int 99.7 6.1E-16 1.3E-20 133.9 20.3 238 74-332 221-473 (555)
198 KOG1538 Uncharacterized conser 99.7 6.5E-16 1.4E-20 131.0 19.8 238 51-338 14-258 (1081)
199 KOG1445 Tumor-specific antigen 99.7 2.8E-16 6.2E-21 132.4 16.7 240 67-332 593-845 (1012)
200 PF08662 eIF2A: Eukaryotic tra 99.7 2.2E-15 4.8E-20 115.4 20.4 116 214-339 60-186 (194)
201 KOG1272 WD40-repeat-containing 99.7 3.8E-17 8.3E-22 132.5 9.3 224 61-329 137-360 (545)
202 KOG2394 WD40 protein DMR-N9 [G 99.7 5E-15 1.1E-19 122.5 20.0 178 67-268 187-384 (636)
203 KOG1963 WD40 repeat protein [G 99.7 5.4E-14 1.2E-18 122.9 26.7 291 15-332 218-539 (792)
204 PRK11028 6-phosphogluconolacto 99.7 1.5E-13 3.3E-18 115.7 28.9 235 68-333 5-260 (330)
205 KOG0650 WD40 repeat nucleolar 99.7 6.2E-15 1.3E-19 123.4 19.6 243 15-285 413-732 (733)
206 KOG2139 WD40 repeat protein [G 99.7 2.1E-14 4.6E-19 113.4 21.2 237 67-332 112-384 (445)
207 PF02239 Cytochrom_D1: Cytochr 99.7 1.2E-13 2.5E-18 116.4 26.4 293 16-339 50-355 (369)
208 KOG3881 Uncharacterized conser 99.7 5.4E-15 1.2E-19 117.7 16.3 208 67-313 117-343 (412)
209 KOG1523 Actin-related protein 99.7 4.3E-15 9.3E-20 115.3 15.2 206 104-333 11-238 (361)
210 KOG1272 WD40-repeat-containing 99.7 2E-16 4.4E-21 128.3 7.2 191 125-341 143-333 (545)
211 KOG1310 WD40 repeat protein [G 99.7 2.3E-15 5E-20 124.9 13.1 234 43-295 44-310 (758)
212 KOG2111 Uncharacterized conser 99.7 6E-13 1.3E-17 103.5 25.3 226 75-340 75-334 (346)
213 KOG1523 Actin-related protein 99.6 1.3E-13 2.7E-18 107.3 21.3 230 13-269 11-260 (361)
214 KOG2321 WD40 repeat protein [G 99.6 6.6E-14 1.4E-18 116.9 20.4 247 48-339 50-310 (703)
215 PRK01742 tolB translocation pr 99.6 8.9E-14 1.9E-18 120.8 21.9 220 74-339 183-411 (429)
216 KOG2394 WD40 protein DMR-N9 [G 99.6 6.5E-15 1.4E-19 121.8 13.7 161 171-338 182-369 (636)
217 KOG1354 Serine/threonine prote 99.6 2.2E-14 4.8E-19 112.5 16.0 271 50-334 26-362 (433)
218 PRK01742 tolB translocation pr 99.6 7E-14 1.5E-18 121.5 20.6 221 44-312 198-426 (429)
219 PF08662 eIF2A: Eukaryotic tra 99.6 1.8E-13 4E-18 104.9 20.1 140 133-297 37-187 (194)
220 KOG1310 WD40 repeat protein [G 99.6 3.5E-15 7.5E-20 123.8 9.2 163 160-331 48-231 (758)
221 KOG0974 WD-repeat protein WDR6 99.6 3.2E-13 6.9E-18 120.2 19.7 189 125-332 101-289 (967)
222 KOG0771 Prolactin regulatory e 99.6 4.5E-14 9.7E-19 113.6 12.8 159 166-338 148-318 (398)
223 KOG0644 Uncharacterized conser 99.6 2.2E-14 4.9E-19 124.6 10.3 232 15-292 203-472 (1113)
224 KOG4547 WD40 repeat-containing 99.6 4.5E-13 9.8E-18 112.4 17.6 212 64-332 4-221 (541)
225 TIGR02658 TTQ_MADH_Hv methylam 99.5 4E-10 8.8E-15 93.1 33.0 279 10-339 8-338 (352)
226 PRK03629 tolB translocation pr 99.5 3.3E-11 7.2E-16 104.6 27.9 219 76-339 180-413 (429)
227 KOG2321 WD40 repeat protein [G 99.5 8.5E-12 1.8E-16 104.6 22.2 265 25-333 75-345 (703)
228 PF02239 Cytochrom_D1: Cytochr 99.5 1.6E-10 3.4E-15 97.6 30.1 198 68-295 9-209 (369)
229 KOG4227 WD40 repeat protein [G 99.5 1.6E-12 3.4E-17 104.1 16.2 211 102-332 55-275 (609)
230 KOG2139 WD40 repeat protein [G 99.5 4.4E-12 9.5E-17 100.5 18.2 181 125-320 112-299 (445)
231 KOG1354 Serine/threonine prote 99.5 2E-11 4.3E-16 96.3 20.5 293 14-328 37-431 (433)
232 PF10282 Lactonase: Lactonase, 99.5 6.1E-09 1.3E-13 88.1 37.3 281 24-337 13-330 (345)
233 PRK05137 tolB translocation pr 99.5 1.6E-10 3.4E-15 100.9 28.1 217 75-335 182-416 (435)
234 KOG4497 Uncharacterized conser 99.5 1.1E-12 2.4E-17 102.6 12.7 230 55-337 14-246 (447)
235 PRK04922 tolB translocation pr 99.5 4E-11 8.8E-16 104.5 24.0 214 75-332 184-412 (433)
236 KOG2315 Predicted translation 99.5 8.4E-11 1.8E-15 98.5 23.7 133 185-337 252-395 (566)
237 PRK03629 tolB translocation pr 99.5 6.9E-11 1.5E-15 102.6 24.5 218 47-312 196-428 (429)
238 PRK02889 tolB translocation pr 99.5 1E-10 2.2E-15 101.7 25.2 223 45-312 191-425 (427)
239 TIGR03300 assembly_YfgL outer 99.5 3.6E-10 7.9E-15 97.1 28.2 277 13-339 64-346 (377)
240 PRK02889 tolB translocation pr 99.5 2.7E-11 5.7E-16 105.3 21.3 161 161-335 194-364 (427)
241 KOG1064 RAVE (regulator of V-A 99.4 5.6E-13 1.2E-17 124.7 11.1 180 125-339 2222-2406(2439)
242 KOG0280 Uncharacterized conser 99.4 9.2E-11 2E-15 90.6 20.5 256 50-334 70-336 (339)
243 KOG4497 Uncharacterized conser 99.4 2.5E-10 5.5E-15 89.7 22.8 272 17-324 64-425 (447)
244 KOG1409 Uncharacterized conser 99.4 1.1E-10 2.5E-15 92.0 21.0 226 17-288 39-270 (404)
245 KOG4532 WD40-like repeat conta 99.4 1.3E-10 2.8E-15 88.7 20.3 235 67-334 86-334 (344)
246 KOG1334 WD40 repeat protein [G 99.4 4E-12 8.6E-17 104.4 13.0 253 10-290 195-468 (559)
247 PRK04922 tolB translocation pr 99.4 7.7E-11 1.7E-15 102.8 21.9 160 161-336 202-373 (433)
248 KOG0974 WD-repeat protein WDR6 99.4 1.8E-11 4E-16 109.2 17.1 188 67-289 101-289 (967)
249 PRK05137 tolB translocation pr 99.4 3E-10 6.6E-15 99.2 23.9 157 161-333 200-368 (435)
250 KOG1409 Uncharacterized conser 99.4 5.8E-11 1.3E-15 93.6 16.9 256 40-334 15-273 (404)
251 KOG2041 WD40 repeat protein [G 99.4 1.7E-10 3.6E-15 99.6 20.7 283 15-332 27-338 (1189)
252 KOG0280 Uncharacterized conser 99.4 1.4E-10 3E-15 89.7 16.7 234 73-332 44-285 (339)
253 TIGR02800 propeller_TolB tol-p 99.3 2.9E-09 6.3E-14 92.9 27.5 219 75-338 170-403 (417)
254 TIGR03300 assembly_YfgL outer 99.3 2E-09 4.4E-14 92.5 25.8 259 14-328 105-376 (377)
255 TIGR02800 propeller_TolB tol-p 99.3 1.2E-09 2.5E-14 95.4 23.2 157 162-334 189-357 (417)
256 KOG4532 WD40-like repeat conta 99.3 1.7E-09 3.6E-14 82.8 19.7 196 125-339 86-290 (344)
257 PF10282 Lactonase: Lactonase, 99.3 1.3E-07 2.8E-12 80.1 33.5 265 23-309 61-345 (345)
258 COG5170 CDC55 Serine/threonine 99.3 1.2E-10 2.7E-15 90.8 13.7 264 51-331 28-367 (460)
259 PLN02919 haloacid dehalogenase 99.3 2.3E-08 5E-13 95.5 30.9 167 166-335 686-892 (1057)
260 PRK01029 tolB translocation pr 99.3 9.2E-09 2E-13 89.2 25.8 160 163-335 231-407 (428)
261 KOG2695 WD40 repeat protein [G 99.3 4E-11 8.7E-16 94.6 9.9 148 178-340 228-385 (425)
262 COG2706 3-carboxymuconate cycl 99.3 3.3E-07 7.1E-12 73.6 32.2 276 23-331 15-321 (346)
263 PRK00178 tolB translocation pr 99.3 4.7E-09 1E-13 91.8 23.7 159 161-335 197-367 (430)
264 KOG4547 WD40 repeat-containing 99.3 6E-10 1.3E-14 94.0 17.0 164 172-339 3-180 (541)
265 KOG2315 Predicted translation 99.3 8.6E-09 1.9E-13 86.7 23.4 136 156-311 264-410 (566)
266 PF13360 PQQ_2: PQQ-like domai 99.2 1.7E-08 3.8E-13 80.9 24.5 224 74-338 2-237 (238)
267 KOG3914 WD repeat protein WDR4 99.2 1.3E-10 2.9E-15 93.5 11.8 159 166-339 66-231 (390)
268 PRK00178 tolB translocation pr 99.2 2E-08 4.4E-13 87.9 26.3 213 76-332 180-407 (430)
269 PRK04792 tolB translocation pr 99.2 2.5E-08 5.4E-13 87.2 25.8 157 165-339 264-432 (448)
270 KOG1064 RAVE (regulator of V-A 99.2 3.6E-10 7.8E-15 106.6 14.5 160 163-339 2209-2374(2439)
271 PRK04792 tolB translocation pr 99.2 7.4E-09 1.6E-13 90.5 21.6 158 162-335 217-386 (448)
272 PF15492 Nbas_N: Neuroblastoma 99.2 1.4E-07 3.1E-12 73.3 24.8 204 125-338 10-266 (282)
273 PRK11138 outer membrane biogen 99.1 1.8E-07 4E-12 80.8 27.8 136 174-330 256-393 (394)
274 COG2706 3-carboxymuconate cycl 99.1 1.6E-06 3.4E-11 69.8 29.9 268 23-310 63-345 (346)
275 COG5354 Uncharacterized protei 99.1 1.9E-07 4.2E-12 78.0 25.1 257 24-332 108-396 (561)
276 TIGR02658 TTQ_MADH_Hv methylam 99.1 5.7E-07 1.2E-11 74.7 28.1 234 22-297 75-339 (352)
277 KOG4190 Uncharacterized conser 99.1 3.9E-10 8.4E-15 94.8 9.1 213 100-335 732-952 (1034)
278 KOG0309 Conserved WD40 repeat- 99.1 1.4E-09 3E-14 94.4 11.9 190 125-332 83-340 (1081)
279 COG4946 Uncharacterized protei 99.1 2.2E-07 4.7E-12 77.1 23.8 146 159-319 356-506 (668)
280 KOG4714 Nucleoporin [Nuclear s 99.1 3.1E-09 6.8E-14 81.0 12.1 74 215-289 181-255 (319)
281 PRK01029 tolB translocation pr 99.1 9.3E-08 2E-12 83.0 23.1 134 165-313 283-426 (428)
282 KOG4190 Uncharacterized conser 99.1 3.8E-09 8.3E-14 88.9 13.7 273 15-327 748-1032(1034)
283 COG4946 Uncharacterized protei 99.1 1.5E-06 3.3E-11 72.3 28.1 148 173-337 331-483 (668)
284 PF15492 Nbas_N: Neuroblastoma 99.1 5.4E-07 1.2E-11 70.2 23.9 217 52-299 46-270 (282)
285 KOG1912 WD40 repeat protein [G 99.1 1E-07 2.2E-12 83.6 22.0 110 228-338 438-558 (1062)
286 PF04762 IKI3: IKI3 family; I 99.0 5.4E-07 1.2E-11 84.8 26.9 212 102-334 74-336 (928)
287 KOG4714 Nucleoporin [Nuclear s 99.0 4E-09 8.6E-14 80.4 10.2 150 170-332 97-255 (319)
288 PF00400 WD40: WD domain, G-be 99.0 1.9E-09 4.1E-14 59.3 6.2 39 290-329 1-39 (39)
289 PF08450 SGL: SMP-30/Gluconola 99.0 3.4E-06 7.4E-11 68.0 27.5 210 65-318 12-242 (246)
290 PF04762 IKI3: IKI3 family; I 99.0 6.2E-07 1.3E-11 84.5 26.2 271 17-329 90-377 (928)
291 KOG1912 WD40 repeat protein [G 98.9 3.2E-07 7E-12 80.6 20.3 288 18-335 29-368 (1062)
292 KOG2314 Translation initiation 98.9 1.9E-06 4.2E-11 73.0 23.8 239 50-332 250-526 (698)
293 KOG2695 WD40 repeat protein [G 98.9 6.5E-09 1.4E-13 82.4 8.2 143 162-310 252-401 (425)
294 PF13360 PQQ_2: PQQ-like domai 98.9 1.2E-06 2.7E-11 70.2 21.8 192 67-295 38-237 (238)
295 KOG2041 WD40 repeat protein [G 98.9 9.3E-08 2E-12 83.2 15.4 237 51-322 16-279 (1189)
296 PLN02919 haloacid dehalogenase 98.9 8.6E-06 1.9E-10 78.4 30.3 224 53-292 627-892 (1057)
297 KOG0882 Cyclophilin-related pe 98.9 2.9E-08 6.2E-13 81.6 11.6 281 16-339 22-313 (558)
298 COG5170 CDC55 Serine/threonine 98.9 2.9E-07 6.3E-12 72.4 15.9 121 164-287 223-366 (460)
299 cd00216 PQQ_DH Dehydrogenases 98.9 1.2E-05 2.6E-10 71.3 27.8 163 168-339 222-432 (488)
300 KOG0882 Cyclophilin-related pe 98.8 2.7E-08 5.8E-13 81.7 9.8 198 125-339 22-239 (558)
301 KOG1275 PAB-dependent poly(A) 98.8 1.6E-07 3.4E-12 83.9 15.2 188 125-339 149-349 (1118)
302 PRK11138 outer membrane biogen 98.8 7E-06 1.5E-10 71.1 25.3 255 66-339 70-361 (394)
303 PF00400 WD40: WD domain, G-be 98.8 1.7E-08 3.6E-13 55.5 6.1 37 250-286 3-39 (39)
304 KOG1832 HIV-1 Vpr-binding prot 98.8 3.1E-09 6.7E-14 94.2 4.4 221 44-317 1096-1317(1516)
305 PF11768 DUF3312: Protein of u 98.8 1.9E-05 4.2E-10 67.9 26.1 71 213-288 259-329 (545)
306 COG5354 Uncharacterized protei 98.8 7.5E-06 1.6E-10 68.8 23.0 244 50-336 72-353 (561)
307 PRK04043 tolB translocation pr 98.8 9.7E-06 2.1E-10 70.2 24.9 154 164-335 189-361 (419)
308 KOG3914 WD repeat protein WDR4 98.8 1.8E-07 4E-12 75.8 13.1 82 212-297 150-232 (390)
309 KOG2314 Translation initiation 98.8 5.3E-06 1.1E-10 70.5 21.0 112 214-331 446-573 (698)
310 PF08450 SGL: SMP-30/Gluconola 98.7 7E-05 1.5E-09 60.3 27.2 190 125-339 14-220 (246)
311 PF07433 DUF1513: Protein of u 98.7 1.2E-05 2.5E-10 64.8 20.7 166 165-339 7-255 (305)
312 PRK04043 tolB translocation pr 98.7 1.3E-05 2.8E-10 69.4 22.8 207 57-306 191-416 (419)
313 KOG0309 Conserved WD40 repeat- 98.7 1.1E-07 2.3E-12 83.1 9.5 158 164-332 69-233 (1081)
314 KOG4649 PQQ (pyrrolo-quinoline 98.7 5.7E-05 1.2E-09 58.5 22.6 276 6-333 54-353 (354)
315 PF07433 DUF1513: Protein of u 98.7 6E-05 1.3E-09 60.8 23.4 220 67-322 19-277 (305)
316 KOG2114 Vacuolar assembly/sort 98.6 3.2E-05 7E-10 69.3 23.3 202 66-297 36-252 (933)
317 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.6 0.00032 7E-09 62.7 30.9 167 168-339 239-498 (527)
318 KOG2066 Vacuolar assembly/sort 98.6 2.3E-06 4.9E-11 75.7 15.1 147 164-339 41-195 (846)
319 KOG1275 PAB-dependent poly(A) 98.5 3.5E-06 7.7E-11 75.6 14.8 180 67-286 149-340 (1118)
320 PF06433 Me-amine-dh_H: Methyl 98.5 0.00031 6.7E-09 57.5 26.8 235 71-339 63-328 (342)
321 KOG1645 RING-finger-containing 98.5 1E-05 2.2E-10 66.1 15.7 249 45-332 189-462 (463)
322 PF11768 DUF3312: Protein of u 98.5 2.3E-06 5.1E-11 73.4 12.6 74 257-333 258-331 (545)
323 KOG2114 Vacuolar assembly/sort 98.5 2.5E-05 5.5E-10 69.9 18.0 194 125-335 37-247 (933)
324 KOG2066 Vacuolar assembly/sort 98.5 1.7E-05 3.7E-10 70.4 16.8 173 125-332 51-234 (846)
325 PRK02888 nitrous-oxide reducta 98.4 0.00038 8.2E-09 61.7 23.8 94 236-332 295-405 (635)
326 KOG1920 IkappaB kinase complex 98.4 0.00019 4.1E-09 67.0 22.7 208 102-334 67-325 (1265)
327 cd00216 PQQ_DH Dehydrogenases 98.4 0.00039 8.4E-09 61.9 24.4 243 67-338 63-381 (488)
328 KOG4649 PQQ (pyrrolo-quinoline 98.3 0.00018 3.9E-09 55.8 17.8 137 174-326 23-160 (354)
329 PF03178 CPSF_A: CPSF A subuni 98.3 0.0012 2.6E-08 55.5 25.5 227 75-328 2-262 (321)
330 PF08596 Lgl_C: Lethal giant l 98.3 0.00064 1.4E-08 58.2 22.1 183 153-339 78-298 (395)
331 PF14783 BBS2_Mid: Ciliary BBS 98.3 0.0001 2.2E-09 49.6 13.6 104 52-187 2-109 (111)
332 KOG1920 IkappaB kinase complex 98.3 0.0006 1.3E-08 63.9 22.7 245 50-330 69-364 (1265)
333 KOG1832 HIV-1 Vpr-binding prot 98.2 1.4E-06 3E-11 78.1 4.8 155 162-336 1101-1260(1516)
334 PRK02888 nitrous-oxide reducta 98.2 0.0013 2.8E-08 58.5 22.0 94 183-289 295-405 (635)
335 PF04053 Coatomer_WDAD: Coatom 98.2 0.003 6.5E-08 55.0 23.8 221 47-332 30-263 (443)
336 PF00780 CNH: CNH domain; Int 98.2 0.0026 5.6E-08 52.2 25.5 231 65-340 7-264 (275)
337 KOG4640 Anaphase-promoting com 98.1 1.6E-05 3.6E-10 68.7 9.2 94 214-311 21-115 (665)
338 KOG3621 WD40 repeat-containing 98.1 2.8E-05 6.1E-10 68.1 10.1 115 216-332 36-155 (726)
339 KOG1008 Uncharacterized conser 98.1 7.2E-07 1.6E-11 76.9 0.2 188 125-332 72-276 (783)
340 KOG3617 WD40 and TPR repeat-co 98.1 0.00039 8.5E-09 62.7 16.2 105 61-192 23-131 (1416)
341 KOG1008 Uncharacterized conser 98.1 1.6E-06 3.5E-11 74.8 1.6 202 51-288 58-275 (783)
342 PF04841 Vps16_N: Vps16, N-ter 98.0 0.0073 1.6E-07 52.5 26.0 208 76-313 62-271 (410)
343 PF06433 Me-amine-dh_H: Methyl 98.0 0.0022 4.7E-08 52.7 18.9 215 55-299 100-331 (342)
344 KOG4640 Anaphase-promoting com 98.0 3.4E-05 7.3E-10 66.8 8.8 78 259-338 21-99 (665)
345 PF03178 CPSF_A: CPSF A subuni 98.0 0.0014 3.1E-08 55.1 18.6 144 174-332 42-203 (321)
346 KOG1645 RING-finger-containing 98.0 4.1E-05 8.8E-10 62.7 8.4 85 161-256 192-277 (463)
347 PF04053 Coatomer_WDAD: Coatom 98.0 0.0019 4E-08 56.2 19.0 140 164-331 34-173 (443)
348 PF08553 VID27: VID27 cytoplas 98.0 0.00033 7.1E-09 64.3 14.9 145 173-330 492-646 (794)
349 smart00320 WD40 WD40 repeats. 98.0 3.1E-05 6.8E-10 41.6 5.6 39 290-329 2-40 (40)
350 PF06977 SdiA-regulated: SdiA- 97.9 0.0065 1.4E-07 48.4 21.7 199 104-328 22-247 (248)
351 KOG3621 WD40 repeat-containing 97.9 0.00018 3.9E-09 63.3 11.6 117 163-289 34-155 (726)
352 KOG2444 WD40 repeat protein [G 97.9 2.5E-05 5.4E-10 59.3 4.8 107 226-332 69-178 (238)
353 PF14655 RAB3GAP2_N: Rab3 GTPa 97.8 0.017 3.6E-07 49.7 26.6 81 259-339 308-406 (415)
354 TIGR03074 PQQ_membr_DH membran 97.8 0.021 4.5E-07 53.4 23.7 255 65-339 194-485 (764)
355 COG0823 TolB Periplasmic compo 97.8 0.0018 3.8E-08 56.1 15.8 156 163-334 193-361 (425)
356 PF08553 VID27: VID27 cytoplas 97.7 0.001 2.3E-08 61.2 14.0 139 131-287 502-646 (794)
357 smart00320 WD40 WD40 repeats. 97.7 0.00013 2.7E-09 39.0 5.3 37 250-286 4-40 (40)
358 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.7 0.037 8E-07 49.8 26.8 61 237-299 441-501 (527)
359 KOG3617 WD40 and TPR repeat-co 97.7 0.00014 3.1E-09 65.4 7.1 107 219-331 21-131 (1416)
360 KOG2079 Vacuolar assembly/sort 97.6 0.00033 7E-09 64.8 8.4 102 226-330 98-202 (1206)
361 COG3391 Uncharacterized conser 97.6 0.029 6.3E-07 48.4 19.8 158 165-338 76-246 (381)
362 KOG2395 Protein involved in va 97.5 0.0027 5.9E-08 54.5 12.2 143 173-330 344-499 (644)
363 PF05096 Glu_cyclase_2: Glutam 97.5 0.033 7.2E-07 44.4 22.1 170 154-339 36-211 (264)
364 PF06977 SdiA-regulated: SdiA- 97.5 0.034 7.4E-07 44.4 20.9 213 45-285 17-247 (248)
365 PF12894 Apc4_WD40: Anaphase-p 97.5 0.00044 9.6E-09 39.0 5.0 35 301-336 11-45 (47)
366 COG3386 Gluconolactonase [Carb 97.4 0.057 1.2E-06 44.7 20.8 191 127-339 41-250 (307)
367 PF08596 Lgl_C: Lethal giant l 97.4 0.021 4.7E-07 49.1 16.2 238 45-322 82-327 (395)
368 PF14783 BBS2_Mid: Ciliary BBS 97.4 0.021 4.5E-07 38.7 14.4 102 216-326 2-109 (111)
369 KOG1897 Damage-specific DNA bi 97.3 0.14 3.1E-06 47.9 26.4 287 1-331 582-898 (1096)
370 KOG2395 Protein involved in va 97.3 0.018 4E-07 49.6 14.9 144 125-288 348-500 (644)
371 PF04841 Vps16_N: Vps16, N-ter 97.3 0.096 2.1E-06 45.6 21.3 162 163-337 81-252 (410)
372 COG3391 Uncharacterized conser 97.3 0.096 2.1E-06 45.2 24.2 189 125-338 88-290 (381)
373 COG0823 TolB Periplasmic compo 97.2 0.0092 2E-07 51.8 12.5 137 166-318 241-386 (425)
374 PF00930 DPPIV_N: Dipeptidyl p 97.2 0.052 1.1E-06 46.4 16.6 169 162-334 42-271 (353)
375 PF12894 Apc4_WD40: Anaphase-p 97.2 0.0015 3.2E-08 36.8 4.8 35 258-293 11-45 (47)
376 COG3386 Gluconolactonase [Carb 97.1 0.12 2.7E-06 42.8 23.8 214 67-322 39-277 (307)
377 PRK13616 lipoprotein LpqB; Pro 97.1 0.037 8.1E-07 50.3 15.2 147 164-330 351-524 (591)
378 KOG4499 Ca2+-binding protein R 97.0 0.099 2.1E-06 40.5 17.4 92 217-311 161-263 (310)
379 COG3204 Uncharacterized protei 97.0 0.11 2.4E-06 41.7 15.5 165 163-338 86-269 (316)
380 COG3490 Uncharacterized protei 97.0 0.083 1.8E-06 42.2 14.6 148 164-320 69-244 (366)
381 KOG3630 Nuclear pore complex, 97.0 0.013 2.7E-07 55.2 11.5 158 158-318 96-260 (1405)
382 KOG2444 WD40 repeat protein [G 96.9 0.0068 1.5E-07 46.4 7.5 107 173-289 69-178 (238)
383 KOG2079 Vacuolar assembly/sort 96.8 0.0074 1.6E-07 56.3 8.7 98 173-281 98-198 (1206)
384 KOG4441 Proteins containing BT 96.8 0.33 7.1E-06 44.3 18.9 146 173-334 380-549 (571)
385 PF00780 CNH: CNH domain; Int 96.7 0.25 5.5E-06 40.4 27.7 256 9-299 2-266 (275)
386 PF00930 DPPIV_N: Dipeptidyl p 96.7 0.34 7.4E-06 41.4 25.2 150 165-320 186-346 (353)
387 PHA02713 hypothetical protein; 96.6 0.59 1.3E-05 42.7 19.8 146 173-334 351-536 (557)
388 PF12234 Rav1p_C: RAVE protein 96.5 0.5 1.1E-05 43.1 17.4 114 165-288 32-156 (631)
389 PF12234 Rav1p_C: RAVE protein 96.4 0.23 5E-06 45.1 15.1 130 44-192 24-156 (631)
390 PRK13616 lipoprotein LpqB; Pro 96.3 0.13 2.8E-06 47.0 13.2 102 215-327 351-472 (591)
391 PF02897 Peptidase_S9_N: Proly 96.3 0.73 1.6E-05 40.4 19.3 111 167-290 128-262 (414)
392 PF10647 Gmad1: Lipoprotein Lp 96.2 0.5 1.1E-05 38.2 16.9 144 164-323 25-187 (253)
393 TIGR03074 PQQ_membr_DH membran 96.1 1.3 2.7E-05 42.0 31.6 65 183-248 413-480 (764)
394 PF08728 CRT10: CRT10; InterP 96.0 1.2 2.7E-05 41.1 17.8 155 174-330 49-245 (717)
395 KOG4441 Proteins containing BT 96.0 1.2 2.7E-05 40.7 20.2 225 26-292 300-550 (571)
396 PF02897 Peptidase_S9_N: Proly 96.0 1 2.2E-05 39.5 28.6 241 61-335 131-408 (414)
397 KOG1916 Nuclear protein, conta 96.0 0.0059 1.3E-07 55.9 3.0 147 184-336 153-328 (1283)
398 PF10168 Nup88: Nuclear pore c 95.9 0.23 4.9E-06 46.3 13.1 75 260-334 86-182 (717)
399 TIGR02604 Piru_Ver_Nterm putat 95.8 0.86 1.9E-05 39.2 15.6 144 164-322 15-204 (367)
400 KOG4499 Ca2+-binding protein R 95.8 0.5 1.1E-05 36.8 12.2 97 125-234 172-273 (310)
401 KOG4659 Uncharacterized conser 95.8 2.2 4.7E-05 41.9 20.2 75 5-87 348-431 (1899)
402 PHA02713 hypothetical protein; 95.8 0.89 1.9E-05 41.5 16.1 72 226-299 463-544 (557)
403 PF15390 DUF4613: Domain of un 95.8 0.85 1.9E-05 40.6 14.9 120 164-289 58-187 (671)
404 PF14583 Pectate_lyase22: Olig 95.8 1.1 2.3E-05 38.2 20.6 193 125-335 50-276 (386)
405 KOG2377 Uncharacterized conser 95.7 0.48 1E-05 40.7 12.9 136 125-276 35-171 (657)
406 PF10168 Nup88: Nuclear pore c 95.6 0.98 2.1E-05 42.3 15.9 90 164-255 86-189 (717)
407 PF10313 DUF2415: Uncharacteri 95.5 0.079 1.7E-06 29.0 5.2 32 302-333 1-35 (43)
408 PF08728 CRT10: CRT10; InterP 95.1 0.47 1E-05 43.7 11.9 160 125-287 51-245 (717)
409 PF02333 Phytase: Phytase; In 95.1 1.9 4.1E-05 36.8 17.0 148 172-331 66-237 (381)
410 PF15390 DUF4613: Domain of un 95.0 0.96 2.1E-05 40.3 12.8 124 50-192 57-186 (671)
411 COG3204 Uncharacterized protei 95.0 1.6 3.5E-05 35.4 19.4 177 49-246 85-264 (316)
412 PF14655 RAB3GAP2_N: Rab3 GTPa 94.9 0.5 1.1E-05 40.9 11.0 95 167-267 6-117 (415)
413 PF10313 DUF2415: Uncharacteri 94.9 0.14 3E-06 28.0 4.9 31 259-289 1-34 (43)
414 KOG1897 Damage-specific DNA bi 94.8 4 8.6E-05 38.9 28.3 294 10-338 495-822 (1096)
415 PF05096 Glu_cyclase_2: Glutam 94.7 1.8 4E-05 34.8 23.4 130 175-320 101-249 (264)
416 PF14870 PSII_BNR: Photosynthe 94.6 2 4.2E-05 35.7 13.3 104 214-322 145-253 (302)
417 PF14727 PHTB1_N: PTHB1 N-term 94.6 2.8 6.1E-05 36.5 25.7 292 14-332 37-361 (418)
418 COG5167 VID27 Protein involved 94.5 1.1 2.3E-05 39.3 11.8 143 173-331 478-632 (776)
419 PF07569 Hira: TUP1-like enhan 94.3 0.7 1.5E-05 36.4 9.9 69 224-293 19-100 (219)
420 PF14583 Pectate_lyase22: Olig 94.2 3.2 6.9E-05 35.4 16.2 149 169-331 42-222 (386)
421 PHA03098 kelch-like protein; P 94.1 1.8 4E-05 39.4 13.6 146 173-334 342-514 (534)
422 PF11715 Nup160: Nucleoporin N 94.1 0.37 8E-06 44.0 9.1 37 303-339 216-256 (547)
423 PHA03098 kelch-like protein; P 94.0 2.4 5.1E-05 38.7 14.1 148 173-334 294-467 (534)
424 PF07569 Hira: TUP1-like enhan 93.8 0.65 1.4E-05 36.6 8.8 67 266-333 18-97 (219)
425 KOG4460 Nuclear pore complex, 93.7 1.1 2.4E-05 39.3 10.4 75 260-334 105-201 (741)
426 PF07995 GSDH: Glucose / Sorbo 93.6 4.1 8.8E-05 34.5 25.6 76 250-326 245-330 (331)
427 PF14781 BBS2_N: Ciliary BBSom 93.0 2.3 5E-05 30.2 13.3 109 125-246 12-126 (136)
428 PRK13684 Ycf48-like protein; P 93.0 5 0.00011 34.0 16.2 151 163-330 173-330 (334)
429 PF10647 Gmad1: Lipoprotein Lp 92.9 4.3 9.2E-05 32.9 15.1 109 216-330 26-143 (253)
430 KOG3630 Nuclear pore complex, 92.8 0.96 2.1E-05 43.5 9.3 106 224-331 109-228 (1405)
431 COG5167 VID27 Protein involved 92.7 6.7 0.00014 34.7 16.6 143 125-288 482-632 (776)
432 PHA02790 Kelch-like protein; P 92.3 7.5 0.00016 34.9 14.2 141 173-334 318-473 (480)
433 PF05694 SBP56: 56kDa selenium 92.2 7.3 0.00016 33.9 21.1 195 125-332 90-343 (461)
434 COG4590 ABC-type uncharacteriz 92.1 1.3 2.9E-05 38.2 8.6 162 163-335 221-390 (733)
435 PF11715 Nup160: Nucleoporin N 92.1 1.3 2.8E-05 40.6 9.4 72 225-296 156-256 (547)
436 PF05694 SBP56: 56kDa selenium 92.1 7.5 0.00016 33.8 27.7 148 165-319 183-391 (461)
437 KOG2377 Uncharacterized conser 91.9 6 0.00013 34.4 12.1 102 210-316 63-168 (657)
438 KOG2280 Vacuolar assembly/sort 91.7 11 0.00024 35.0 18.0 55 258-312 216-270 (829)
439 KOG2247 WD40 repeat-containing 91.7 0.021 4.5E-07 48.9 -2.3 134 169-318 41-176 (615)
440 TIGR02276 beta_rpt_yvtn 40-res 91.6 1.3 2.7E-05 23.9 6.1 31 268-298 1-32 (42)
441 PF11635 Med16: Mediator compl 91.5 13 0.00029 35.5 19.3 68 259-326 260-345 (753)
442 KOG1983 Tomosyn and related SN 91.4 7.7 0.00017 38.2 14.0 72 257-335 197-268 (993)
443 KOG1900 Nuclear pore complex, 91.3 14 0.00031 36.6 15.2 162 72-246 96-273 (1311)
444 PF07250 Glyoxal_oxid_N: Glyox 91.3 6.5 0.00014 31.5 11.6 140 186-339 48-205 (243)
445 KOG1916 Nuclear protein, conta 91.2 0.13 2.7E-06 47.8 1.9 112 214-330 133-264 (1283)
446 PRK10115 protease 2; Provision 91.0 14 0.00031 34.9 18.3 110 165-287 129-254 (686)
447 PF14727 PHTB1_N: PTHB1 N-term 90.9 10 0.00023 33.1 30.3 158 64-245 36-204 (418)
448 COG1520 FOG: WD40-like repeat 90.9 9.8 0.00021 32.8 16.4 151 175-338 69-224 (370)
449 COG3823 Glutamine cyclotransfe 90.4 6.9 0.00015 30.2 12.8 123 181-319 108-247 (262)
450 PF14761 HPS3_N: Hermansky-Pud 90.4 7.1 0.00015 30.3 12.3 104 228-333 29-165 (215)
451 COG1520 FOG: WD40-like repeat 90.2 11 0.00025 32.4 19.8 191 125-339 70-276 (370)
452 smart00564 PQQ beta-propeller 89.8 1.1 2.4E-05 22.6 4.1 26 175-200 7-32 (33)
453 PF13449 Phytase-like: Esteras 89.7 12 0.00025 31.8 16.3 164 163-331 20-249 (326)
454 PLN00033 photosystem II stabil 89.4 14 0.0003 32.3 17.8 147 165-328 241-396 (398)
455 PF07995 GSDH: Glucose / Sorbo 89.2 13 0.00027 31.6 15.4 107 165-278 4-133 (331)
456 PRK05560 DNA gyrase subunit A; 89.2 22 0.00048 34.4 25.0 251 65-331 498-772 (805)
457 KOG1900 Nuclear pore complex, 89.2 20 0.00042 35.8 14.2 142 181-332 96-273 (1311)
458 COG3490 Uncharacterized protei 89.1 11 0.00024 30.7 21.5 227 68-329 83-346 (366)
459 TIGR02604 Piru_Ver_Nterm putat 89.1 14 0.0003 31.9 13.1 101 216-320 16-142 (367)
460 PHA02790 Kelch-like protein; P 88.7 18 0.00039 32.6 14.4 144 173-334 271-426 (480)
461 KOG2063 Vacuolar assembly/sort 88.5 25 0.00054 34.0 15.7 21 65-85 26-46 (877)
462 PF01011 PQQ: PQQ enzyme repea 88.0 1.4 3.1E-05 23.3 3.8 29 176-204 2-30 (38)
463 PF10395 Utp8: Utp8 family; I 87.9 23 0.00049 32.9 26.4 258 60-337 34-311 (670)
464 smart00564 PQQ beta-propeller 87.7 1.5 3.3E-05 22.1 3.8 25 315-339 8-32 (33)
465 PF14781 BBS2_N: Ciliary BBSom 87.5 8.3 0.00018 27.4 13.0 112 224-339 7-133 (136)
466 TIGR02276 beta_rpt_yvtn 40-res 87.4 2.1 4.6E-05 23.0 4.5 29 311-339 1-30 (42)
467 PF11635 Med16: Mediator compl 87.1 29 0.00064 33.3 23.5 224 10-240 58-345 (753)
468 PF07676 PD40: WD40-like Beta 86.6 3.3 7.2E-05 21.9 5.3 29 257-285 7-38 (39)
469 PF08801 Nucleoporin_N: Nup133 86.5 22 0.00048 31.3 15.9 31 302-332 190-220 (422)
470 PF12657 TFIIIC_delta: Transcr 86.4 12 0.00026 28.2 9.9 31 259-289 86-122 (173)
471 COG4257 Vgb Streptogramin lyas 86.2 17 0.00036 29.6 15.1 168 150-333 49-220 (353)
472 TIGR03118 PEPCTERM_chp_1 conse 85.9 18 0.0004 29.9 21.1 258 48-311 17-307 (336)
473 COG4257 Vgb Streptogramin lyas 85.9 17 0.00037 29.5 18.4 148 163-332 148-306 (353)
474 PF05935 Arylsulfotrans: Aryls 85.8 26 0.00057 31.5 16.4 111 224-339 156-309 (477)
475 TIGR03606 non_repeat_PQQ dehyd 85.4 26 0.00057 31.1 13.6 105 216-322 32-166 (454)
476 PF01011 PQQ: PQQ enzyme repea 84.9 3 6.6E-05 22.1 4.1 27 272-298 2-28 (38)
477 PF07250 Glyoxal_oxid_N: Glyox 84.4 20 0.00043 28.8 12.3 136 153-298 57-207 (243)
478 PF14870 PSII_BNR: Photosynthe 84.2 23 0.0005 29.5 29.8 149 162-328 144-301 (302)
479 PRK13684 Ycf48-like protein; P 84.2 25 0.00054 29.9 11.7 107 214-326 173-283 (334)
480 COG3823 Glutamine cyclotransfe 84.0 18 0.00039 28.1 11.7 151 173-338 55-211 (262)
481 PF12657 TFIIIC_delta: Transcr 83.4 13 0.00028 28.1 8.4 31 302-332 86-122 (173)
482 KOG2247 WD40 repeat-containing 83.2 0.15 3.2E-06 44.0 -2.3 231 67-340 48-289 (615)
483 TIGR03118 PEPCTERM_chp_1 conse 82.9 26 0.00056 29.1 20.0 77 165-245 25-118 (336)
484 KOG4460 Nuclear pore complex, 82.8 35 0.00077 30.6 11.4 83 164-247 105-200 (741)
485 PF03022 MRJP: Major royal jel 82.6 27 0.00058 29.0 14.9 181 76-278 35-255 (287)
486 TIGR03548 mutarot_permut cycli 81.9 30 0.00065 29.1 15.3 65 226-292 123-198 (323)
487 PF14269 Arylsulfotran_2: Aryl 81.3 31 0.00066 28.8 15.9 76 164-245 145-220 (299)
488 KOG1898 Splicing factor 3b, su 81.2 58 0.0013 32.0 13.3 148 185-340 854-1013(1205)
489 TIGR01063 gyrA DNA gyrase, A s 81.0 56 0.0012 31.7 25.4 252 65-331 496-769 (800)
490 PF14761 HPS3_N: Hermansky-Pud 80.5 25 0.00055 27.4 14.8 110 67-194 30-165 (215)
491 PF10214 Rrn6: RNA polymerase 80.2 59 0.0013 31.4 23.5 168 154-332 71-277 (765)
492 PF02333 Phytase: Phytase; In 78.2 44 0.00096 28.9 24.0 215 16-254 70-299 (381)
493 KOG3522 Predicted guanine nucl 78.0 11 0.00025 35.4 7.4 140 175-334 548-700 (925)
494 PF12341 DUF3639: Protein of u 77.7 6.6 0.00014 19.1 3.5 25 260-286 3-27 (27)
495 COG4590 ABC-type uncharacteriz 77.6 41 0.00088 29.6 10.0 106 125-247 282-388 (733)
496 COG5308 NUP170 Nuclear pore co 77.5 62 0.0013 31.3 11.7 105 72-191 99-208 (1263)
497 PF14269 Arylsulfotran_2: Aryl 76.9 15 0.00033 30.6 7.5 70 261-330 146-219 (299)
498 PF10433 MMS1_N: Mono-function 75.8 63 0.0014 29.4 26.7 268 12-311 220-503 (504)
499 PF01436 NHL: NHL repeat; Int 75.2 8 0.00017 18.8 3.6 23 305-327 5-27 (28)
500 COG5276 Uncharacterized conser 74.7 47 0.001 27.4 20.8 193 130-341 58-251 (370)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.8e-46 Score=289.60 Aligned_cols=286 Identities=17% Similarity=0.238 Sum_probs=243.9
Q ss_pred CceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchh-eee
Q 019405 14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRV-AIS 92 (341)
Q Consensus 14 ~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~-~~~ 92 (341)
.-++++|+.|-++++|++..+ .+..+.++|..-|.+++++||++ .||+|+.||.|++||.++|+++. .+.
T Consensus 127 g~~l~tGsGD~TvR~WD~~Te-----Tp~~t~KgH~~WVlcvawsPDgk----~iASG~~dg~I~lwdpktg~~~g~~l~ 197 (480)
T KOG0271|consen 127 GSRLVTGSGDTTVRLWDLDTE-----TPLFTCKGHKNWVLCVAWSPDGK----KIASGSKDGSIRLWDPKTGQQIGRALR 197 (480)
T ss_pred CceEEecCCCceEEeeccCCC-----CcceeecCCccEEEEEEECCCcc----hhhccccCCeEEEecCCCCCccccccc
Confidence 357888999999999999987 67778899999999999998887 89999999999999999987754 344
Q ss_pred ccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecC
Q 019405 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI 172 (341)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~ 172 (341)
+ |.+.|++++|-+.+... ..+.|++++.||.++||++.... .++.. ..|..+|+|+.|-.
T Consensus 198 g--------H~K~It~Lawep~hl~p---~~r~las~skDg~vrIWd~~~~~--------~~~~l-sgHT~~VTCvrwGG 257 (480)
T KOG0271|consen 198 G--------HKKWITALAWEPLHLVP---PCRRLASSSKDGSVRIWDTKLGT--------CVRTL-SGHTASVTCVRWGG 257 (480)
T ss_pred C--------cccceeEEeecccccCC---CccceecccCCCCEEEEEccCce--------EEEEe-ccCccceEEEEEcC
Confidence 4 67999999997765431 23389999999999999986432 33333 35788999999975
Q ss_pred CCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEe---------cCC-----------------
Q 019405 173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS---------IDD----------------- 226 (341)
Q Consensus 173 ~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---------~~~----------------- 226 (341)
+ .+|++|+.|++|++|+...|...+.+++|. .+|+.++... .|.
T Consensus 258 ~-gliySgS~DrtIkvw~a~dG~~~r~lkGHa---------hwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~r 327 (480)
T KOG0271|consen 258 E-GLIYSGSQDRTIKVWRALDGKLCRELKGHA---------HWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALER 327 (480)
T ss_pred C-ceEEecCCCceEEEEEccchhHHHhhcccc---------hheeeeeccchhhhhccccccccccCCChHHHHHHHHHH
Confidence 4 589999999999999999999999888865 5666666510 122
Q ss_pred --------CCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEec
Q 019405 227 --------HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG 298 (341)
Q Consensus 227 --------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 298 (341)
+..+++|+.|.++.+|+....++|+..+.+|..-|+.+.||||++++|+++.|..|++||-++|+.+.+|++
T Consensus 328 Y~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRG 407 (480)
T KOG0271|consen 328 YEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRG 407 (480)
T ss_pred HHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhh
Confidence 245999999999999999887888999999999999999999999999999999999999999999999999
Q ss_pred cccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 299 KCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 299 ~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
| -++|+.++|+.|.++|++||.|.++++||+++.++...+
T Consensus 408 H-v~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DL 447 (480)
T KOG0271|consen 408 H-VAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDL 447 (480)
T ss_pred c-cceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccC
Confidence 9 899999999999999999999999999999998776543
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=7.2e-45 Score=287.36 Aligned_cols=273 Identities=16% Similarity=0.154 Sum_probs=245.2
Q ss_pred CCCceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchhee
Q 019405 12 CPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAI 91 (341)
Q Consensus 12 ~~~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 91 (341)
.....+++|+-+|.+|+|+.... ..+.+|.+|...+.++.|.|..+ +.-+|+++.||++++|++++..++..+
T Consensus 185 ~ds~~laT~swsG~~kvW~~~~~-----~~~~~l~gH~~~v~~~~fhP~~~--~~~lat~s~Dgtvklw~~~~e~~l~~l 257 (459)
T KOG0272|consen 185 RDSKHLATGSWSGLVKVWSVPQC-----NLLQTLRGHTSRVGAAVFHPVDS--DLNLATASADGTVKLWKLSQETPLQDL 257 (459)
T ss_pred cCCCeEEEeecCCceeEeecCCc-----ceeEEEeccccceeeEEEccCCC--ccceeeeccCCceeeeccCCCcchhhh
Confidence 34567899999999999998876 57778999999999999999852 335999999999999999988899998
Q ss_pred eccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEec
Q 019405 92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD 171 (341)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~ 171 (341)
.+| ...+..++|.+... .|.+++.|.+-++||+..... .+..-.|...|.+++|+
T Consensus 258 ~gH--------~~RVs~VafHPsG~--------~L~TasfD~tWRlWD~~tk~E---------lL~QEGHs~~v~~iaf~ 312 (459)
T KOG0272|consen 258 EGH--------LARVSRVAFHPSGK--------FLGTASFDSTWRLWDLETKSE---------LLLQEGHSKGVFSIAFQ 312 (459)
T ss_pred hcc--------hhhheeeeecCCCc--------eeeecccccchhhcccccchh---------hHhhcccccccceeEec
Confidence 884 46777777777776 999999999999999976542 23334577899999999
Q ss_pred CCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCcee
Q 019405 172 ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPV 251 (341)
Q Consensus 172 ~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 251 (341)
+||.++++|+.|..-+|||+++++++..+.+|. ..|.+++| +|+|..|++|+.|++++|||++.... +
T Consensus 313 ~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~---------k~I~~V~f--sPNGy~lATgs~Dnt~kVWDLR~r~~-l 380 (459)
T KOG0272|consen 313 PDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHI---------KEILSVAF--SPNGYHLATGSSDNTCKVWDLRMRSE-L 380 (459)
T ss_pred CCCceeeccCccchhheeecccCcEEEEecccc---------cceeeEeE--CCCceEEeecCCCCcEEEeeeccccc-c
Confidence 999999999999999999999999999999876 55999999 99999999999999999999998654 8
Q ss_pred EEEEecCCCeEEEEEcC-CCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEE
Q 019405 252 MSFDFRETPIKAVAEEP-DSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWD 329 (341)
Q Consensus 252 ~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd 329 (341)
.++..|..-|+.++|+| .|.+|++++.|++++||..+++.+++++.+| ++.|.++..+++++.+++++.|.++++|.
T Consensus 381 y~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGH-e~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 381 YTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGH-EGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred eecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCC-ccceEEEEeccCCceEEEeccCceeeecc
Confidence 89999999999999999 7899999999999999999999999999999 99999999999999999999999999995
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=8.3e-43 Score=275.73 Aligned_cols=252 Identities=16% Similarity=0.183 Sum_probs=225.8
Q ss_pred CCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecc-ccccccccce
Q 019405 47 DPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQ-REESSSRSRT 125 (341)
Q Consensus 47 ~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 125 (341)
+.+.++..+.||.++. .|+||+.+|.++||+..+...+.++.+| ...+.++.|.+.. .. .
T Consensus 173 gd~rPis~~~fS~ds~----~laT~swsG~~kvW~~~~~~~~~~l~gH--------~~~v~~~~fhP~~~~~-------~ 233 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSK----HLATGSWSGLVKVWSVPQCNLLQTLRGH--------TSRVGAAVFHPVDSDL-------N 233 (459)
T ss_pred cCCCcceeeEeecCCC----eEEEeecCCceeEeecCCcceeEEEecc--------ccceeeEEEccCCCcc-------c
Confidence 4567888889998887 8999999999999999999888899884 4778888888874 32 8
Q ss_pred eEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCC
Q 019405 126 LLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPK 205 (341)
Q Consensus 126 l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~ 205 (341)
+++++.||++++|+++... .+..+. .|...|..++|+|+|++|++++.|.+-++||++++..+....+|.
T Consensus 234 lat~s~Dgtvklw~~~~e~--------~l~~l~-gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs- 303 (459)
T KOG0272|consen 234 LATASADGTVKLWKLSQET--------PLQDLE-GHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHS- 303 (459)
T ss_pred eeeeccCCceeeeccCCCc--------chhhhh-cchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccc-
Confidence 9999999999999987543 233232 356789999999999999999999999999999999888777765
Q ss_pred CccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEE
Q 019405 206 NSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASV 285 (341)
Q Consensus 206 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iw 285 (341)
..|.+++| .++|.++++|+.|..-+|||++++.+ +..+.+|..+|.+++|+|+|..||+|+.|++++||
T Consensus 304 --------~~v~~iaf--~~DGSL~~tGGlD~~~RvWDlRtgr~-im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVW 372 (459)
T KOG0272|consen 304 --------KGVFSIAF--QPDGSLAATGGLDSLGRVWDLRTGRC-IMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVW 372 (459)
T ss_pred --------cccceeEe--cCCCceeeccCccchhheeecccCcE-EEEecccccceeeEeECCCceEEeecCCCCcEEEe
Confidence 55999999 89999999999999999999999887 88999999999999999999999999999999999
Q ss_pred ECCCCeEEeEEeccccCceeEEEecC-CCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 286 DIRTGKLLGCFIGKCSGSIRSIARHP-TLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 286 d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
|++..+.++.+.+| .+-|+.+.|+| .|.+|+|++.|++++||...+.++++++
T Consensus 373 DLR~r~~ly~ipAH-~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksL 426 (459)
T KOG0272|consen 373 DLRMRSELYTIPAH-SNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSL 426 (459)
T ss_pred eecccccceecccc-cchhhheEecccCCeEEEEcccCcceeeecCCCcccchhh
Confidence 99999999999998 99999999999 6789999999999999999999998765
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.5e-41 Score=262.50 Aligned_cols=257 Identities=11% Similarity=0.082 Sum_probs=221.8
Q ss_pred eeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccc
Q 019405 41 VVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS 120 (341)
Q Consensus 41 ~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (341)
....+.+|.++|.+++|+++++ .|++|+.|.++|+||+.+..++.+.++| ...+.|+.|.+..+
T Consensus 107 CssS~~GH~e~Vl~~~fsp~g~----~l~tGsGD~TvR~WD~~TeTp~~t~KgH--------~~WVlcvawsPDgk---- 170 (480)
T KOG0271|consen 107 CSSSIAGHGEAVLSVQFSPTGS----RLVTGSGDTTVRLWDLDTETPLFTCKGH--------KNWVLCVAWSPDGK---- 170 (480)
T ss_pred eccccCCCCCcEEEEEecCCCc----eEEecCCCceEEeeccCCCCcceeecCC--------ccEEEEEEECCCcc----
Confidence 3456778999999999998777 8999999999999999999999999884 57788888888777
Q ss_pred cccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecC-----CCCEEEEeeCCCeEEEEECCCCc
Q 019405 121 SRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-----SEKFSLFGGKGVEVNVWDLDKCE 195 (341)
Q Consensus 121 ~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~d~~v~i~d~~~~~ 195 (341)
.+++|+.||+|.+|+...+.. ..+.+ ..|...|.+++|.| ..+++++++.||.|+|||+..++
T Consensus 171 ----~iASG~~dg~I~lwdpktg~~-------~g~~l-~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~ 238 (480)
T KOG0271|consen 171 ----KIASGSKDGSIRLWDPKTGQQ-------IGRAL-RGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT 238 (480)
T ss_pred ----hhhccccCCeEEEecCCCCCc-------ccccc-cCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce
Confidence 999999999999999765442 11222 24778999999976 56899999999999999999999
Q ss_pred eeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEc--------
Q 019405 196 KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEE-------- 267 (341)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~-------- 267 (341)
.+..+.+|. ..|+|+.| . ...++++|+.|++|++|+...+.. .+.+++|...|+.++.+
T Consensus 239 ~~~~lsgHT---------~~VTCvrw--G-G~gliySgS~DrtIkvw~a~dG~~-~r~lkGHahwvN~lalsTdy~LRtg 305 (480)
T KOG0271|consen 239 CVRTLSGHT---------ASVTCVRW--G-GEGLIYSGSQDRTIKVWRALDGKL-CRELKGHAHWVNHLALSTDYVLRTG 305 (480)
T ss_pred EEEEeccCc---------cceEEEEE--c-CCceEEecCCCceEEEEEccchhH-HHhhcccchheeeeeccchhhhhcc
Confidence 999998876 66999999 3 345999999999999999998765 88999999999998877
Q ss_pred ---CCCc-------------------------eEEEEeCCCCEEEEECCC-CeEEeEEeccccCceeEEEecCCCCEEEE
Q 019405 268 ---PDSF-------------------------NIYIGNGSGDLASVDIRT-GKLLGCFIGKCSGSIRSIARHPTLPIIAS 318 (341)
Q Consensus 268 ---~~~~-------------------------~l~~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 318 (341)
|.++ .|++|+.|.++.+|+... .+++..+.+| ...|+.+.|+||++++|+
T Consensus 306 af~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgH-q~lVn~V~fSPd~r~IAS 384 (480)
T KOG0271|consen 306 AFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGH-QALVNHVSFSPDGRYIAS 384 (480)
T ss_pred ccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhch-hhheeeEEECCCccEEEE
Confidence 2233 499999999999999764 4588889998 899999999999999999
Q ss_pred EeCCCcEEEEEcCCCceeeee
Q 019405 319 CGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 319 ~~~dg~v~iwd~~~~~~~~~~ 339 (341)
+|.|..|++||.++|+.+.++
T Consensus 385 aSFDkSVkLW~g~tGk~lasf 405 (480)
T KOG0271|consen 385 ASFDKSVKLWDGRTGKFLASF 405 (480)
T ss_pred eecccceeeeeCCCcchhhhh
Confidence 999999999999999988765
No 5
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=6.4e-39 Score=237.39 Aligned_cols=280 Identities=14% Similarity=0.150 Sum_probs=237.9
Q ss_pred CCCceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcc--hh
Q 019405 12 CPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL--RV 89 (341)
Q Consensus 12 ~~~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--~~ 89 (341)
.+++-+++++-|-+||.|++..+ .+..+++..+..|+.+...++.+ +||+|+ ...||+||+.++.. +.
T Consensus 8 d~~viLvsA~YDhTIRfWqa~tG-----~C~rTiqh~dsqVNrLeiTpdk~----~LAaa~-~qhvRlyD~~S~np~Pv~ 77 (311)
T KOG0315|consen 8 DDPVILVSAGYDHTIRFWQALTG-----ICSRTIQHPDSQVNRLEITPDKK----DLAAAG-NQHVRLYDLNSNNPNPVA 77 (311)
T ss_pred CCceEEEeccCcceeeeeehhcC-----eEEEEEecCccceeeEEEcCCcc----hhhhcc-CCeeEEEEccCCCCCcee
Confidence 37788999999999999999987 77888888889999998887777 677776 77999999998765 55
Q ss_pred eeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEE
Q 019405 90 AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSK 169 (341)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~ 169 (341)
++.+ +.+.+..+.|-.... .+.++++||+++||+++.-. .-+.++ +..+|.++.
T Consensus 78 t~e~--------h~kNVtaVgF~~dgr--------WMyTgseDgt~kIWdlR~~~--------~qR~~~--~~spVn~vv 131 (311)
T KOG0315|consen 78 TFEG--------HTKNVTAVGFQCDGR--------WMYTGSEDGTVKIWDLRSLS--------CQRNYQ--HNSPVNTVV 131 (311)
T ss_pred EEec--------cCCceEEEEEeecCe--------EEEecCCCceEEEEeccCcc--------cchhcc--CCCCcceEE
Confidence 5555 447787777766666 99999999999999997522 334444 458999999
Q ss_pred ecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCC-
Q 019405 170 VDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR- 248 (341)
Q Consensus 170 ~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~- 248 (341)
.+|+...|++|..+|.|++||+.+......+..... ..|.++.. .|+|.+++.+...|+.++|++-...
T Consensus 132 lhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~--------~~i~sl~v--~~dgsml~a~nnkG~cyvW~l~~~~~ 201 (311)
T KOG0315|consen 132 LHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDD--------TSIQSLTV--MPDGSMLAAANNKGNCYVWRLLNHQT 201 (311)
T ss_pred ecCCcceEEeecCCCcEEEEEccCCccccccCCCCC--------cceeeEEE--cCCCcEEEEecCCccEEEEEccCCCc
Confidence 999999999999999999999988766655544322 45899999 8999999999999999999987632
Q ss_pred ----ceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCC-eEEeEEeccccCceeEEEecCCCCEEEEEeCCC
Q 019405 249 ----RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG-KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDS 323 (341)
Q Consensus 249 ----~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg 323 (341)
.|+.+++.|+.-+..+.+||++++|++++.|.+++||+.++. +....+.+| ...++..+||.||++|+|++.|+
T Consensus 202 ~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh-~rWvWdc~FS~dg~YlvTassd~ 280 (311)
T KOG0315|consen 202 ASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGH-QRWVWDCAFSADGEYLVTASSDH 280 (311)
T ss_pred cccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecC-CceEEeeeeccCccEEEecCCCC
Confidence 367888999999999999999999999999999999999988 667778888 89999999999999999999999
Q ss_pred cEEEEEcCCCceeee
Q 019405 324 YLRFWDIKTRQLLSA 338 (341)
Q Consensus 324 ~v~iwd~~~~~~~~~ 338 (341)
.+++|++..++.+..
T Consensus 281 ~~rlW~~~~~k~v~q 295 (311)
T KOG0315|consen 281 TARLWDLSAGKEVRQ 295 (311)
T ss_pred ceeecccccCceeee
Confidence 999999999987654
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.3e-38 Score=238.03 Aligned_cols=276 Identities=11% Similarity=0.107 Sum_probs=228.5
Q ss_pred CceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeec
Q 019405 14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN 93 (341)
Q Consensus 14 ~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 93 (341)
+-.++.++.|-.+.+|++.......-.++.+|.+|...+.-++.+++++ +.++++.|+++++||+.+++..+.+.+
T Consensus 28 ~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~----~alS~swD~~lrlWDl~~g~~t~~f~G 103 (315)
T KOG0279|consen 28 SDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGN----FALSASWDGTLRLWDLATGESTRRFVG 103 (315)
T ss_pred CceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCc----eEEeccccceEEEEEecCCcEEEEEEe
Confidence 3448889999999999998874333356779999999999999888887 899999999999999999988888888
Q ss_pred cCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCC
Q 019405 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS 173 (341)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~ 173 (341)
| ..-+.++++.+.+. .+++++.|.++.+|++-..- ...+-+..+...|.|+.|+|+
T Consensus 104 H--------~~dVlsva~s~dn~--------qivSGSrDkTiklwnt~g~c--------k~t~~~~~~~~WVscvrfsP~ 159 (315)
T KOG0279|consen 104 H--------TKDVLSVAFSTDNR--------QIVSGSRDKTIKLWNTLGVC--------KYTIHEDSHREWVSCVRFSPN 159 (315)
T ss_pred c--------CCceEEEEecCCCc--------eeecCCCcceeeeeeecccE--------EEEEecCCCcCcEEEEEEcCC
Confidence 5 46688888877766 99999999999999975332 233333333568999999997
Q ss_pred --CCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCcee
Q 019405 174 --EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPV 251 (341)
Q Consensus 174 --~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 251 (341)
..+|++++.|++|++||+++.+....+.+|. ..++.+++ +|||.+.++|+.||.+.+||++.++. +
T Consensus 160 ~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~---------~~v~t~~v--SpDGslcasGgkdg~~~LwdL~~~k~-l 227 (315)
T KOG0279|consen 160 ESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHS---------GYVNTVTV--SPDGSLCASGGKDGEAMLWDLNEGKN-L 227 (315)
T ss_pred CCCcEEEEccCCceEEEEccCCcchhhcccccc---------ccEEEEEE--CCCCCEEecCCCCceEEEEEccCCce-e
Confidence 6899999999999999999988888777754 67999999 99999999999999999999998775 6
Q ss_pred EEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccc--------cCceeEEEecCCCCEEEEEeCCC
Q 019405 252 MSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC--------SGSIRSIARHPTLPIIASCGLDS 323 (341)
Q Consensus 252 ~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~--------~~~i~~~~~~~~~~~l~s~~~dg 323 (341)
..+. |...|.+++|+|+...|+.+. +..|+|||+.++..+..++... .....+++|+++|..|+++-.|+
T Consensus 228 ysl~-a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~ 305 (315)
T KOG0279|consen 228 YSLE-AFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDN 305 (315)
T ss_pred Eecc-CCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCC
Confidence 5554 778999999999987666654 4569999999988876664321 12356789999999999999999
Q ss_pred cEEEEEcC
Q 019405 324 YLRFWDIK 331 (341)
Q Consensus 324 ~v~iwd~~ 331 (341)
.|++|.+.
T Consensus 306 ~irv~qv~ 313 (315)
T KOG0279|consen 306 VIRVWQVA 313 (315)
T ss_pred cEEEEEee
Confidence 99999875
No 7
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.8e-38 Score=238.39 Aligned_cols=269 Identities=17% Similarity=0.222 Sum_probs=229.5
Q ss_pred CCceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCc------
Q 019405 13 PPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD------ 86 (341)
Q Consensus 13 ~~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~------ 86 (341)
..-++++++.||.+.+|+.+.. ..++.+.-...-|...||+|.+. ++|.|+-|+...||++.+.+
T Consensus 66 Dsr~ivSaSqDGklIvWDs~Tt-----nK~haipl~s~WVMtCA~sPSg~----~VAcGGLdN~Csiy~ls~~d~~g~~~ 136 (343)
T KOG0286|consen 66 DSRRIVSASQDGKLIVWDSFTT-----NKVHAIPLPSSWVMTCAYSPSGN----FVACGGLDNKCSIYPLSTRDAEGNVR 136 (343)
T ss_pred CcCeEEeeccCCeEEEEEcccc-----cceeEEecCceeEEEEEECCCCC----eEEecCcCceeEEEecccccccccce
Confidence 3467999999999999999986 23334544566677778877666 89999999999999998552
Q ss_pred chheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceE
Q 019405 87 LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIA 166 (341)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~ 166 (341)
..+++.+ |.+.+.|..+.+ +. .+++++.|.+..+||++... .+..|. .|.+.|.
T Consensus 137 v~r~l~g--------HtgylScC~f~d-D~--------~ilT~SGD~TCalWDie~g~--------~~~~f~-GH~gDV~ 190 (343)
T KOG0286|consen 137 VSRELAG--------HTGYLSCCRFLD-DN--------HILTGSGDMTCALWDIETGQ--------QTQVFH-GHTGDVM 190 (343)
T ss_pred eeeeecC--------ccceeEEEEEcC-CC--------ceEecCCCceEEEEEcccce--------EEEEec-CCcccEE
Confidence 2223333 556677777766 55 89999999999999998665 566666 5789999
Q ss_pred EEEecC-CCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcC
Q 019405 167 FSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS 245 (341)
Q Consensus 167 ~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~ 245 (341)
+++++| +++.+++|+-|+..++||++.+...+.|.+|. .-|++++| .|+|.-+++|+.|++.|+||++
T Consensus 191 slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghe---------sDINsv~f--fP~G~afatGSDD~tcRlyDlR 259 (343)
T KOG0286|consen 191 SLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHE---------SDINSVRF--FPSGDAFATGSDDATCRLYDLR 259 (343)
T ss_pred EEecCCCCCCeEEecccccceeeeeccCcceeEeecccc---------cccceEEE--ccCCCeeeecCCCceeEEEeec
Confidence 999999 99999999999999999999999999999976 45999999 7899999999999999999999
Q ss_pred CCCceeEEEEe--cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCC
Q 019405 246 AQRRPVMSFDF--RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDS 323 (341)
Q Consensus 246 ~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg 323 (341)
..++ +..+.. -..+|++++||..|++|++|..|..+.+||.-.++.+..+.+| ++.|.++..+|||.-+++||.|.
T Consensus 260 aD~~-~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GH-eNRvScl~~s~DG~av~TgSWDs 337 (343)
T KOG0286|consen 260 ADQE-LAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGH-ENRVSCLGVSPDGMAVATGSWDS 337 (343)
T ss_pred CCcE-EeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeecc-CCeeEEEEECCCCcEEEecchhH
Confidence 8665 666653 2457999999999999999999999999999999999999998 99999999999999999999999
Q ss_pred cEEEEE
Q 019405 324 YLRFWD 329 (341)
Q Consensus 324 ~v~iwd 329 (341)
.+|||.
T Consensus 338 ~lriW~ 343 (343)
T KOG0286|consen 338 TLRIWA 343 (343)
T ss_pred heeecC
Confidence 999994
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-37 Score=233.26 Aligned_cols=259 Identities=13% Similarity=0.202 Sum_probs=213.1
Q ss_pred eeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCC-----CcchheeeccCCCCCCCCCCceeeEeeeecc
Q 019405 41 VVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN-----GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQ 115 (341)
Q Consensus 41 ~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (341)
+..++.+|...|+.++...... +.|++++.|.++.+|++.. |..++.+.+| ...+..+...+..
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~---~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GH--------sH~v~dv~~s~dg 75 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNS---DILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGH--------SHFVSDVVLSSDG 75 (315)
T ss_pred eeeeecCCCceEEEEEeecCCC---ceEEEcccceEEEEEEeccCccccCceeeeeecc--------ceEecceEEccCC
Confidence 4457888999999999887744 3799999999999998753 4455666654 4555556655555
Q ss_pred ccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCc
Q 019405 116 REESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE 195 (341)
Q Consensus 116 ~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~ 195 (341)
. +.++++.|+.+++||+..+. +.+.|. .|...|.+++|++|...+++|+.|.+|++||.....
T Consensus 76 ~--------~alS~swD~~lrlWDl~~g~--------~t~~f~-GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~c 138 (315)
T KOG0279|consen 76 N--------FALSASWDGTLRLWDLATGE--------STRRFV-GHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVC 138 (315)
T ss_pred c--------eEEeccccceEEEEEecCCc--------EEEEEE-ecCCceEEEEecCCCceeecCCCcceeeeeeecccE
Confidence 5 99999999999999997543 445554 478899999999999999999999999999986544
Q ss_pred eeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEE
Q 019405 196 KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYI 275 (341)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 275 (341)
. .++.... +.+||.|++|.|+++..+|++++.|++|++||+++.+. ...+.+|+..++.+++||||.++++
T Consensus 139 k-~t~~~~~-------~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l-~~~~~gh~~~v~t~~vSpDGslcas 209 (315)
T KOG0279|consen 139 K-YTIHEDS-------HREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL-RTTFIGHSGYVNTVTVSPDGSLCAS 209 (315)
T ss_pred E-EEEecCC-------CcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch-hhccccccccEEEEEECCCCCEEec
Confidence 3 3333332 13899999996555588999999999999999998664 7888999999999999999999999
Q ss_pred EeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 276 GNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 276 g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
|+.||.+.+||++.++.++.+.. ...|.+++|+|+...|+.+ .+..|+|||+.++.++.++
T Consensus 210 Ggkdg~~~LwdL~~~k~lysl~a--~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l 270 (315)
T KOG0279|consen 210 GGKDGEAMLWDLNEGKNLYSLEA--FDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEEL 270 (315)
T ss_pred CCCCceEEEEEccCCceeEeccC--CCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhc
Confidence 99999999999999999988874 6899999999998777766 4456999999999988765
No 9
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3.1e-39 Score=254.56 Aligned_cols=270 Identities=16% Similarity=0.200 Sum_probs=229.7
Q ss_pred ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 94 (341)
-|+++|+..|...+|+...- .++. .+.+|+.+|.++.++.++. ++++|+.+|.|++|+.. ...++.+..|
T Consensus 109 RRLltgs~SGEFtLWNg~~f---nFEt--ilQaHDs~Vr~m~ws~~g~----wmiSgD~gG~iKyWqpn-mnnVk~~~ah 178 (464)
T KOG0284|consen 109 RRLLTGSQSGEFTLWNGTSF---NFET--ILQAHDSPVRTMKWSHNGT----WMISGDKGGMIKYWQPN-MNNVKIIQAH 178 (464)
T ss_pred ceeEeecccccEEEecCcee---eHHH--HhhhhcccceeEEEccCCC----EEEEcCCCceEEecccc-hhhhHHhhHh
Confidence 57889999999998887443 1122 4678999999999998877 99999999999999985 4455556653
Q ss_pred CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC
Q 019405 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (341)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~ 174 (341)
+...|.++++.+.+. .+++++.||+++||+....... ++. ..|+-.|.+++|+|..
T Consensus 179 -------h~eaIRdlafSpnDs--------kF~t~SdDg~ikiWdf~~~kee--------~vL-~GHgwdVksvdWHP~k 234 (464)
T KOG0284|consen 179 -------HAEAIRDLAFSPNDS--------KFLTCSDDGTIKIWDFRMPKEE--------RVL-RGHGWDVKSVDWHPTK 234 (464)
T ss_pred -------hhhhhheeccCCCCc--------eeEEecCCCeEEEEeccCCchh--------hee-ccCCCCcceeccCCcc
Confidence 447788888877655 9999999999999997654421 222 3577789999999999
Q ss_pred CEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEE
Q 019405 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF 254 (341)
Q Consensus 175 ~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 254 (341)
.+++++++|+.|++||.++++++..+..|+ ..|..+.| ++++++|++++.|..++++|+++.+. ++.+
T Consensus 235 gLiasgskDnlVKlWDprSg~cl~tlh~HK---------ntVl~~~f--~~n~N~Llt~skD~~~kv~DiR~mkE-l~~~ 302 (464)
T KOG0284|consen 235 GLIASGSKDNLVKLWDPRSGSCLATLHGHK---------NTVLAVKF--NPNGNWLLTGSKDQSCKVFDIRTMKE-LFTY 302 (464)
T ss_pred ceeEEccCCceeEeecCCCcchhhhhhhcc---------ceEEEEEE--cCCCCeeEEccCCceEEEEehhHhHH-HHHh
Confidence 999999999999999999999999998876 55999999 89999999999999999999997665 8999
Q ss_pred EecCCCeEEEEEcCC-CceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEc
Q 019405 255 DFRETPIKAVAEEPD-SFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDI 330 (341)
Q Consensus 255 ~~~~~~v~~~~~~~~-~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~ 330 (341)
++|+..++++.|+|- ..+|.+|+.||.|..|.+...+++..+...|...|++++|+|-|.+|++|+.|.++++|.-
T Consensus 303 r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 303 RGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred hcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence 999999999999994 4688899999999999998667777776555999999999999999999999999999964
No 10
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.4e-38 Score=268.70 Aligned_cols=258 Identities=17% Similarity=0.234 Sum_probs=222.0
Q ss_pred eeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc-----------------CCC-------
Q 019405 42 VERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA-----------------GDS------- 97 (341)
Q Consensus 42 ~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-----------------~~~------- 97 (341)
.+++......++|..|+.|.+ +||.|..|..|++|.+...+ ++.++.. .+.
T Consensus 371 ~YT~~nt~~~v~ca~fSddss----mlA~Gf~dS~i~~~Sl~p~k-l~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~ 445 (707)
T KOG0263|consen 371 MYTFHNTYQGVTCAEFSDDSS----MLACGFVDSSVRVWSLTPKK-LKKLKDASDLSNIDTESADVDVDMLDDDSSGTSR 445 (707)
T ss_pred EEEEEEcCCcceeEeecCCcc----hhhccccccEEEEEecchhh-hccccchhhhccccccccchhhhhccccCCceeE
Confidence 345555667788888888888 89999999999999987432 1111110 000
Q ss_pred CCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEE
Q 019405 98 GAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFS 177 (341)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l 177 (341)
.-.+|.+++.+..+.+... .|+++++|+++++|++.... .+-.+. .|..+|+.+.|+|.|-++
T Consensus 446 ~L~GH~GPVyg~sFsPd~r--------fLlScSED~svRLWsl~t~s--------~~V~y~-GH~~PVwdV~F~P~GyYF 508 (707)
T KOG0263|consen 446 TLYGHSGPVYGCSFSPDRR--------FLLSCSEDSSVRLWSLDTWS--------CLVIYK-GHLAPVWDVQFAPRGYYF 508 (707)
T ss_pred EeecCCCceeeeeeccccc--------ceeeccCCcceeeeecccce--------eEEEec-CCCcceeeEEecCCceEE
Confidence 0125788999998888877 99999999999999997654 455555 678899999999999999
Q ss_pred EEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEec
Q 019405 178 LFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR 257 (341)
Q Consensus 178 ~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 257 (341)
|+++.|++-++|.....++++.+.+|- +-|.|+.| +|+.+++++|+.|.+||+||+.++.. ++.|.+|
T Consensus 509 atas~D~tArLWs~d~~~PlRifaghl---------sDV~cv~F--HPNs~Y~aTGSsD~tVRlWDv~~G~~-VRiF~GH 576 (707)
T KOG0263|consen 509 ATASHDQTARLWSTDHNKPLRIFAGHL---------SDVDCVSF--HPNSNYVATGSSDRTVRLWDVSTGNS-VRIFTGH 576 (707)
T ss_pred EecCCCceeeeeecccCCchhhhcccc---------cccceEEE--CCcccccccCCCCceEEEEEcCCCcE-EEEecCC
Confidence 999999999999999988888888875 44999999 88999999999999999999999886 9999999
Q ss_pred CCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCc
Q 019405 258 ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ 334 (341)
Q Consensus 258 ~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 334 (341)
.++|.+++|||+|++|++|+.||.|.+||+.+++++..+.+| .+.|+++.|+.+|..||+++.|.+|++||+..-.
T Consensus 577 ~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~H-t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 577 KGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGH-TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred CCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcc-cCceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 999999999999999999999999999999999999999999 9999999999999999999999999999987543
No 11
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.6e-38 Score=243.71 Aligned_cols=280 Identities=18% Similarity=0.248 Sum_probs=234.0
Q ss_pred eeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCC
Q 019405 17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGD 96 (341)
Q Consensus 17 ~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 96 (341)
++.|.+.|..+....|-. -+.+.+++.+|..+++.+-|-++.. ++++++.|++|++||..++++...+++|
T Consensus 79 l~~g~pt~~~~~~~~wip---Rp~l~~~l~g~r~~vt~v~~hp~~~----~v~~as~d~tikv~D~~tg~~e~~LrGH-- 149 (406)
T KOG0295|consen 79 LIAGDPTGSKRTPALWIP---RPNLVQKLAGHRSSVTRVIFHPSEA----LVVSASEDATIKVFDTETGELERSLRGH-- 149 (406)
T ss_pred cccCCCCcCccChhhcCC---CCCchhhhhccccceeeeeeccCce----EEEEecCCceEEEEEccchhhhhhhhcc--
Confidence 556666676665555433 1124455667888888888865555 7888999999999999999999999985
Q ss_pred CCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCE
Q 019405 97 SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKF 176 (341)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~ 176 (341)
.+.+..+.+-.... .+++++.|-.+.+|+.+..-. .++. ...|...|.++.|-|.|.+
T Consensus 150 ------t~sv~di~~~a~Gk--------~l~tcSsDl~~~LWd~~~~~~-------c~ks-~~gh~h~vS~V~f~P~gd~ 207 (406)
T KOG0295|consen 150 ------TDSVFDISFDASGK--------YLATCSSDLSAKLWDFDTFFR-------CIKS-LIGHEHGVSSVFFLPLGDH 207 (406)
T ss_pred ------ccceeEEEEecCcc--------EEEecCCccchhheeHHHHHH-------HHHH-hcCcccceeeEEEEecCCe
Confidence 35566666655555 999999999999999764211 1221 2345667899999999999
Q ss_pred EEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEe
Q 019405 177 SLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF 256 (341)
Q Consensus 177 l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 256 (341)
+++++.|.+|+.|++.++..+..+..|. .||..++. ..||.++++++.|.+|++|-+.+.++ ...++.
T Consensus 208 ilS~srD~tik~We~~tg~cv~t~~~h~---------ewvr~v~v--~~DGti~As~s~dqtl~vW~~~t~~~-k~~lR~ 275 (406)
T KOG0295|consen 208 ILSCSRDNTIKAWECDTGYCVKTFPGHS---------EWVRMVRV--NQDGTIIASCSNDQTLRVWVVATKQC-KAELRE 275 (406)
T ss_pred eeecccccceeEEecccceeEEeccCch---------HhEEEEEe--cCCeeEEEecCCCceEEEEEeccchh-hhhhhc
Confidence 9999999999999999999999999865 78999998 89999999999999999999998654 778889
Q ss_pred cCCCeEEEEEcCC---------------CceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeC
Q 019405 257 RETPIKAVAEEPD---------------SFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGL 321 (341)
Q Consensus 257 ~~~~v~~~~~~~~---------------~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 321 (341)
|+.+|-+++|.|. ++++.+++.|++|++||+.++.++.++.+| .+.|..++|+|.|++|+++.+
T Consensus 276 hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~gh-dnwVr~~af~p~Gkyi~ScaD 354 (406)
T KOG0295|consen 276 HEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGH-DNWVRGVAFSPGGKYILSCAD 354 (406)
T ss_pred cccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecc-cceeeeeEEcCCCeEEEEEec
Confidence 9999999999663 368999999999999999999999999999 999999999999999999999
Q ss_pred CCcEEEEEcCCCceeeeec
Q 019405 322 DSYLRFWDIKTRQLLSAVC 340 (341)
Q Consensus 322 dg~v~iwd~~~~~~~~~~~ 340 (341)
|+++++||+++++|+.+++
T Consensus 355 Dktlrvwdl~~~~cmk~~~ 373 (406)
T KOG0295|consen 355 DKTLRVWDLKNLQCMKTLE 373 (406)
T ss_pred CCcEEEEEeccceeeeccC
Confidence 9999999999999998764
No 12
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.5e-36 Score=243.48 Aligned_cols=268 Identities=14% Similarity=0.219 Sum_probs=232.0
Q ss_pred CceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeec
Q 019405 14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN 93 (341)
Q Consensus 14 ~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 93 (341)
.-.+++|+.+|.+++|+.... ++.++..|.++|..+.++..+. ||++++.|+++.+||..++.....+..
T Consensus 247 G~~LatG~~~G~~riw~~~G~------l~~tl~~HkgPI~slKWnk~G~----yilS~~vD~ttilwd~~~g~~~q~f~~ 316 (524)
T KOG0273|consen 247 GTLLATGSEDGEARIWNKDGN------LISTLGQHKGPIFSLKWNKKGT----YILSGGVDGTTILWDAHTGTVKQQFEF 316 (524)
T ss_pred CCeEEEeecCcEEEEEecCch------hhhhhhccCCceEEEEEcCCCC----EEEeccCCccEEEEeccCceEEEeeee
Confidence 456788999999999998764 5668889999999888877666 999999999999999999988888877
Q ss_pred cCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCC
Q 019405 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS 173 (341)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~ 173 (341)
|. .+...+.|.+.. .+++++.|+.++++.+. .++++..+.- |.++|.++.|+|.
T Consensus 317 ~s--------~~~lDVdW~~~~---------~F~ts~td~~i~V~kv~--------~~~P~~t~~G-H~g~V~alk~n~t 370 (524)
T KOG0273|consen 317 HS--------APALDVDWQSND---------EFATSSTDGCIHVCKVG--------EDRPVKTFIG-HHGEVNALKWNPT 370 (524)
T ss_pred cc--------CCccceEEecCc---------eEeecCCCceEEEEEec--------CCCcceeeec-ccCceEEEEECCC
Confidence 42 333445554433 79999999999999987 4557777776 8899999999999
Q ss_pred CCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCC---------CCEEEEEeCCCeEEEEEc
Q 019405 174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD---------HRKFVAGTNDHQVRLYDT 244 (341)
Q Consensus 174 ~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---------~~~l~~~~~d~~i~iwd~ 244 (341)
+.+|++++.|++++||..........+..|.+ .|..+.| +|. +..+++++.|++|++||+
T Consensus 371 g~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hsk---------ei~t~~w--sp~g~v~~n~~~~~~l~sas~dstV~lwdv 439 (524)
T KOG0273|consen 371 GSLLASCSDDGTLKIWSMGQSNSVHDLQAHSK---------EIYTIKW--SPTGPVTSNPNMNLMLASASFDSTVKLWDV 439 (524)
T ss_pred CceEEEecCCCeeEeeecCCCcchhhhhhhcc---------ceeeEee--cCCCCccCCCcCCceEEEeecCCeEEEEEc
Confidence 99999999999999999988888877877663 4777788 443 357899999999999999
Q ss_pred CCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCc
Q 019405 245 SAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSY 324 (341)
Q Consensus 245 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~ 324 (341)
..+. +++.|..|..+|.+++|+|+|+++|+|+.||.|.||+++++++.+.+.+ .+.|..++|+.+|.+|..+-.|+.
T Consensus 440 ~~gv-~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~--~~~Ifel~Wn~~G~kl~~~~sd~~ 516 (524)
T KOG0273|consen 440 ESGV-PIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG--TGGIFELCWNAAGDKLGACASDGS 516 (524)
T ss_pred cCCc-eeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC--CCeEEEEEEcCCCCEEEEEecCCC
Confidence 9977 4999999999999999999999999999999999999999999999987 577999999999999999999999
Q ss_pred EEEEEcC
Q 019405 325 LRFWDIK 331 (341)
Q Consensus 325 v~iwd~~ 331 (341)
+++-|++
T Consensus 517 vcvldlr 523 (524)
T KOG0273|consen 517 VCVLDLR 523 (524)
T ss_pred ceEEEec
Confidence 9999875
No 13
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.1e-37 Score=238.33 Aligned_cols=269 Identities=12% Similarity=0.163 Sum_probs=231.7
Q ss_pred eeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCC-CcchheeeccC
Q 019405 17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN-GDLRVAISNAG 95 (341)
Q Consensus 17 ~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~ 95 (341)
.+++++|++|++|+..+. ++...+++|..++..++|...+. +|++++.|-.+++||.++ .++++...+
T Consensus 123 v~~as~d~tikv~D~~tg-----~~e~~LrGHt~sv~di~~~a~Gk----~l~tcSsDl~~~LWd~~~~~~c~ks~~g-- 191 (406)
T KOG0295|consen 123 VVSASEDATIKVFDTETG-----ELERSLRGHTDSVFDISFDASGK----YLATCSSDLSAKLWDFDTFFRCIKSLIG-- 191 (406)
T ss_pred EEEecCCceEEEEEccch-----hhhhhhhccccceeEEEEecCcc----EEEecCCccchhheeHHHHHHHHHHhcC--
Confidence 356678999999999987 56678899999988888877665 899999999999999976 445555554
Q ss_pred CCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCC
Q 019405 96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK 175 (341)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~ 175 (341)
++..+.++.+++.+. .+++++.|.++++|++..+- .++.+.. +...|..++.+.||.
T Consensus 192 ------h~h~vS~V~f~P~gd--------~ilS~srD~tik~We~~tg~--------cv~t~~~-h~ewvr~v~v~~DGt 248 (406)
T KOG0295|consen 192 ------HEHGVSSVFFLPLGD--------HILSCSRDNTIKAWECDTGY--------CVKTFPG-HSEWVRMVRVNQDGT 248 (406)
T ss_pred ------cccceeeEEEEecCC--------eeeecccccceeEEecccce--------eEEeccC-chHhEEEEEecCCee
Confidence 456677788888776 99999999999999987554 5666654 566899999999999
Q ss_pred EEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEec-------------CCCCEEEEEeCCCeEEEE
Q 019405 176 FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSI-------------DDHRKFVAGTNDHQVRLY 242 (341)
Q Consensus 176 ~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------------~~~~~l~~~~~d~~i~iw 242 (341)
++++++.|.+|++|-+.+++....+..|. .+|.+++|.|- ..+.++.+++.|++|++|
T Consensus 249 i~As~s~dqtl~vW~~~t~~~k~~lR~hE---------h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~w 319 (406)
T KOG0295|consen 249 IIASCSNDQTLRVWVVATKQCKAELREHE---------HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIW 319 (406)
T ss_pred EEEecCCCceEEEEEeccchhhhhhhccc---------cceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEE
Confidence 99999999999999999998777777754 55888888541 123589999999999999
Q ss_pred EcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCC
Q 019405 243 DTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLD 322 (341)
Q Consensus 243 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d 322 (341)
|+.++.+ +.++.+|...|..++|+|.|++|+++..|+++++||++++++...+..| ..-++++.|+.+..++++|+-|
T Consensus 320 dv~tg~c-L~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah-~hfvt~lDfh~~~p~VvTGsVd 397 (406)
T KOG0295|consen 320 DVSTGMC-LFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAH-EHFVTSLDFHKTAPYVVTGSVD 397 (406)
T ss_pred eccCCeE-EEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCC-cceeEEEecCCCCceEEecccc
Confidence 9999876 9999999999999999999999999999999999999999999999988 9999999999999999999999
Q ss_pred CcEEEEEc
Q 019405 323 SYLRFWDI 330 (341)
Q Consensus 323 g~v~iwd~ 330 (341)
..+++|.-
T Consensus 398 qt~KvwEc 405 (406)
T KOG0295|consen 398 QTVKVWEC 405 (406)
T ss_pred ceeeeeec
Confidence 99999964
No 14
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.3e-35 Score=250.87 Aligned_cols=277 Identities=18% Similarity=0.260 Sum_probs=236.5
Q ss_pred eeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCC
Q 019405 18 LTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDS 97 (341)
Q Consensus 18 ~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 97 (341)
+.+++-|++-||+...+ ..+.+.++|-..++++++|+|+. ++|+|+.||+|+|||...+-|..++..|
T Consensus 324 ~g~~klgQLlVweWqsE-----sYVlKQQgH~~~i~~l~YSpDgq----~iaTG~eDgKVKvWn~~SgfC~vTFteH--- 391 (893)
T KOG0291|consen 324 FGCSKLGQLLVWEWQSE-----SYVLKQQGHSDRITSLAYSPDGQ----LIATGAEDGKVKVWNTQSGFCFVTFTEH--- 391 (893)
T ss_pred EcCCccceEEEEEeecc-----ceeeeccccccceeeEEECCCCc----EEEeccCCCcEEEEeccCceEEEEeccC---
Confidence 34456689999999887 56677888999999999988777 9999999999999999999999988874
Q ss_pred CCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEE
Q 019405 98 GAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFS 177 (341)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l 177 (341)
...++.+.+..... .+++.+-||+++.||+.... ..+.|....+....|++.+|.|.++
T Consensus 392 -----ts~Vt~v~f~~~g~--------~llssSLDGtVRAwDlkRYr--------NfRTft~P~p~QfscvavD~sGelV 450 (893)
T KOG0291|consen 392 -----TSGVTAVQFTARGN--------VLLSSSLDGTVRAWDLKRYR--------NFRTFTSPEPIQFSCVAVDPSGELV 450 (893)
T ss_pred -----CCceEEEEEEecCC--------EEEEeecCCeEEeeeecccc--------eeeeecCCCceeeeEEEEcCCCCEE
Confidence 46788888877766 99999999999999997443 5666666666677899999999999
Q ss_pred EEeeCCC-eEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEe
Q 019405 178 LFGGKGV-EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF 256 (341)
Q Consensus 178 ~~~~~d~-~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 256 (341)
++|+.|. .|++|++++|+.+-.+.+|. ++|.+++| +|.++.|++++.|.+||+||+-.....+..+.
T Consensus 451 ~AG~~d~F~IfvWS~qTGqllDiLsGHE---------gPVs~l~f--~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~- 518 (893)
T KOG0291|consen 451 CAGAQDSFEIFVWSVQTGQLLDILSGHE---------GPVSGLSF--SPDGSLLASGSWDKTVRIWDIFSSSGTVETLE- 518 (893)
T ss_pred EeeccceEEEEEEEeecCeeeehhcCCC---------CcceeeEE--ccccCeEEeccccceEEEEEeeccCceeeeEe-
Confidence 9999885 59999999999999998865 77999999 89999999999999999999987655456665
Q ss_pred cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEecc-------------------ccCceeEEEecCCCCEEE
Q 019405 257 RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK-------------------CSGSIRSIARHPTLPIIA 317 (341)
Q Consensus 257 ~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~-------------------~~~~i~~~~~~~~~~~l~ 317 (341)
+...+..++|+|+|+.|+++..||.|.+||...+..+..+.+. ....++.+++++||..++
T Consensus 519 i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~Il 598 (893)
T KOG0291|consen 519 IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCIL 598 (893)
T ss_pred eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEE
Confidence 5567999999999999999999999999999876555443321 135799999999999999
Q ss_pred EEeCCCcEEEEEcCCCceeeee
Q 019405 318 SCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 318 s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
+|+....|++||+.++-.++++
T Consensus 599 AgG~sn~iCiY~v~~~vllkkf 620 (893)
T KOG0291|consen 599 AGGESNSICIYDVPEGVLLKKF 620 (893)
T ss_pred ecCCcccEEEEECchhheeeeE
Confidence 9999999999999999888765
No 15
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.9e-35 Score=222.14 Aligned_cols=260 Identities=15% Similarity=0.160 Sum_probs=219.8
Q ss_pred eeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccc
Q 019405 43 ERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSR 122 (341)
Q Consensus 43 ~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (341)
..+++|...|+++-|+.|.. +|++++.||.+.|||.-+...+..+... ...+...++.|...
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr----~ivSaSqDGklIvWDs~TtnK~haipl~--------s~WVMtCA~sPSg~------ 110 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSR----RIVSASQDGKLIVWDSFTTNKVHAIPLP--------SSWVMTCAYSPSGN------ 110 (343)
T ss_pred EEecccccceeeeEecCCcC----eEEeeccCCeEEEEEcccccceeEEecC--------ceeEEEEEECCCCC------
Confidence 36889999999999888877 8999999999999999887766666552 24455555555544
Q ss_pred cceeEEEcccceeEEEEeeecccccccCCceEEEE--EeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeec
Q 019405 123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSW--NVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTA 200 (341)
Q Consensus 123 ~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~ 200 (341)
.++.|+-|+.-.||++.+.. .++.+++- -..|.+.+.|+.|-+ ...|++++.|.+..+||+++++.+..|
T Consensus 111 --~VAcGGLdN~Csiy~ls~~d-----~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f 182 (343)
T KOG0286|consen 111 --FVACGGLDNKCSIYPLSTRD-----AEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVF 182 (343)
T ss_pred --eEEecCcCceeEEEeccccc-----ccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEe
Confidence 88999999999999997543 22233322 335678899999976 667899999999999999999999999
Q ss_pred CCCCCCccCccCCeeeeEEEEEecC-CCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCC
Q 019405 201 KPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS 279 (341)
Q Consensus 201 ~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d 279 (341)
.+|. +-|.++.+ +| +++.+++|+-|+..++||++.+.. ++.|.+|+..|++++|.|+|.-+++|+.|
T Consensus 183 ~GH~---------gDV~slsl--~p~~~ntFvSg~cD~~aklWD~R~~~c-~qtF~ghesDINsv~ffP~G~afatGSDD 250 (343)
T KOG0286|consen 183 HGHT---------GDVMSLSL--SPSDGNTFVSGGCDKSAKLWDVRSGQC-VQTFEGHESDINSVRFFPSGDAFATGSDD 250 (343)
T ss_pred cCCc---------ccEEEEec--CCCCCCeEEecccccceeeeeccCcce-eEeecccccccceEEEccCCCeeeecCCC
Confidence 9876 44999999 66 999999999999999999999865 99999999999999999999999999999
Q ss_pred CCEEEEECCCCeEEeEEecc-ccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeeec
Q 019405 280 GDLASVDIRTGKLLGCFIGK-CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVC 340 (341)
Q Consensus 280 g~i~iwd~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 340 (341)
++.++||++..+.+..+... ...+|++++|+..|++|++|..|.++.+||.-.++.+..|+
T Consensus 251 ~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~ 312 (343)
T KOG0286|consen 251 ATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLA 312 (343)
T ss_pred ceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEee
Confidence 99999999999888877632 14589999999999999999999999999998888877765
No 16
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=6.3e-35 Score=237.30 Aligned_cols=298 Identities=17% Similarity=0.178 Sum_probs=235.2
Q ss_pred CCCceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchhee
Q 019405 12 CPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAI 91 (341)
Q Consensus 12 ~~~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 91 (341)
.-|+|++++++|+.+.+++-..- +...++++|..-|.++.|+||++ ++++++.||+|.|||-.+|+.+..+
T Consensus 158 sRPfRi~T~sdDn~v~ffeGPPF-----KFk~s~r~HskFV~~VRysPDG~----~Fat~gsDgki~iyDGktge~vg~l 228 (603)
T KOG0318|consen 158 SRPFRIATGSDDNTVAFFEGPPF-----KFKSSFREHSKFVNCVRYSPDGS----RFATAGSDGKIYIYDGKTGEKVGEL 228 (603)
T ss_pred CCceEEEeccCCCeEEEeeCCCe-----eeeecccccccceeeEEECCCCC----eEEEecCCccEEEEcCCCccEEEEe
Confidence 34799999999999998875554 66668889999999999998877 8999999999999999999999888
Q ss_pred eccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccc------------------------c
Q 019405 92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS------------------------A 147 (341)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~------------------------~ 147 (341)
.. ..+|.+.|..+.|.+... .+++++.|.+++||++...+.. +
T Consensus 229 ~~-----~~aHkGsIfalsWsPDs~--------~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lIt 295 (603)
T KOG0318|consen 229 ED-----SDAHKGSIFALSWSPDST--------QFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLIT 295 (603)
T ss_pred cC-----CCCccccEEEEEECCCCc--------eEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEE
Confidence 75 125779999999988887 9999999999999999876542 1
Q ss_pred ccCCceEEEEEee----------cCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeee-----------cCCCC--
Q 019405 148 ESSCSTVKSWNVC----------ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT-----------AKPPP-- 204 (341)
Q Consensus 148 ~~~~~~v~~~~~~----------~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~-----------~~~~~-- 204 (341)
-+..|.+..++.. |...|+++..++++++|++|+.||.|.-|+..++..-+. +....
T Consensus 296 VSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~ 375 (603)
T KOG0318|consen 296 VSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESG 375 (603)
T ss_pred EEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCC
Confidence 1222333333322 346799999999999999999999999999976532110 00000
Q ss_pred ----------------------CC--------c-----------------------------cCccCCeeeeEEEEEecC
Q 019405 205 ----------------------KN--------S-----------------------------LGIFTPTWFTSAAFLSID 225 (341)
Q Consensus 205 ----------------------~~--------~-----------------------------~~~~~~~~v~~~~~~~~~ 225 (341)
.. + ..+.-.-...++++ +|
T Consensus 376 ~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv--~~ 453 (603)
T KOG0318|consen 376 ELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAV--SP 453 (603)
T ss_pred cEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEE--cC
Confidence 00 0 00000112456666 78
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCC-ceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCce
Q 019405 226 DHRKFVAGTNDHQVRLYDTSAQR-RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSI 304 (341)
Q Consensus 226 ~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i 304 (341)
+++.+++|+.|+.|++|.+.... .....+..|..+|+++++||++.+||+|...+.+.+||+.+.+.....-..|.+.|
T Consensus 454 ~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI 533 (603)
T KOG0318|consen 454 DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKI 533 (603)
T ss_pred CCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeE
Confidence 99999999999999999998755 33445667999999999999999999999999999999998877544444349999
Q ss_pred eEEEecCCCCEEEEEeCCCcEEEEEcCCC
Q 019405 305 RSIARHPTLPIIASCGLDSYLRFWDIKTR 333 (341)
Q Consensus 305 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 333 (341)
.+++|+|+..++||||.|..|.||+++..
T Consensus 534 ~~~aWsP~n~~vATGSlDt~Viiysv~kP 562 (603)
T KOG0318|consen 534 NCVAWSPNNKLVATGSLDTNVIIYSVKKP 562 (603)
T ss_pred EEEEeCCCceEEEeccccceEEEEEccCh
Confidence 99999999999999999999999999753
No 17
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.7e-36 Score=250.93 Aligned_cols=306 Identities=15% Similarity=0.143 Sum_probs=219.3
Q ss_pred ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCc-chheeec
Q 019405 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD-LRVAISN 93 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~ 93 (341)
.-+.+|+.||.++||++... .+.+.|++|.+.|..+.|.++... .+|++|..|+++++||+.+.. ++..+..
T Consensus 118 ~LlAtggaD~~v~VWdi~~~-----~~th~fkG~gGvVssl~F~~~~~~--~lL~sg~~D~~v~vwnl~~~~tcl~~~~~ 190 (775)
T KOG0319|consen 118 TLLATGGADGRVKVWDIKNG-----YCTHSFKGHGGVVSSLLFHPHWNR--WLLASGATDGTVRVWNLNDKRTCLHTMIL 190 (775)
T ss_pred ceEEeccccceEEEEEeeCC-----EEEEEecCCCceEEEEEeCCccch--hheeecCCCceEEEEEcccCchHHHHHHh
Confidence 44678899999999999987 788899999999999999988874 478999999999999998544 3566555
Q ss_pred cCCCCCCCCCCceeeEeeeeccc--------------------------------------cccccccceeEEEccccee
Q 019405 94 AGDSGAQPEDDGIVGLHLFKRQR--------------------------------------EESSSRSRTLLTCTTKGKA 135 (341)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~l~~~~~~g~~ 135 (341)
|. ..++++.+.+... ++.+.....+++++.+|.+
T Consensus 191 H~--------S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~ 262 (775)
T KOG0319|consen 191 HK--------SAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVV 262 (775)
T ss_pred hh--------hheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceE
Confidence 43 2222222222211 0001112256666666777
Q ss_pred EEEEeeecccc------------------------cccCCc---------------------------------------
Q 019405 136 SMRSIEVTKVS------------------------AESSCS--------------------------------------- 152 (341)
Q Consensus 136 ~i~~~~~~~~~------------------------~~~~~~--------------------------------------- 152 (341)
++|+.+..... ....++
T Consensus 263 ~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVA 342 (775)
T KOG0319|consen 263 QYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVA 342 (775)
T ss_pred EEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEE
Confidence 77765433210 000111
Q ss_pred ----eEEEEEee---------cCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCc------------------------
Q 019405 153 ----TVKSWNVC---------ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE------------------------ 195 (341)
Q Consensus 153 ----~v~~~~~~---------~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~------------------------ 195 (341)
.+++++.. |...|.+++...+|.+|++|+.|+++++|.++++.
T Consensus 343 TNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~ 422 (775)
T KOG0319|consen 343 TNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKL 422 (775)
T ss_pred eCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeeccc
Confidence 11111111 01234455544455677777777777777653211
Q ss_pred --------------eeeecCCCC---------CCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeE
Q 019405 196 --------------KIWTAKPPP---------KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM 252 (341)
Q Consensus 196 --------------~~~~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 252 (341)
.++.+.... .......|...|+++++ +|+.++++||+.|.+.+||++.... ...
T Consensus 423 ~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vai--a~ndkLiAT~SqDktaKiW~le~~~-l~~ 499 (775)
T KOG0319|consen 423 GASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAI--APNDKLIATGSQDKTAKIWDLEQLR-LLG 499 (775)
T ss_pred CccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEe--cCCCceEEecccccceeeecccCce-EEE
Confidence 011111100 00123346678999999 8999999999999999999999654 588
Q ss_pred EEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405 253 SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (341)
Q Consensus 253 ~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 332 (341)
.+.+|...|.++.|+|..+.+++++.|++|+||.+.++.++.+|.+| ...|..+.|-.++.+|++++.||.+++|++++
T Consensus 500 vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH-~~aVlra~F~~~~~qliS~~adGliKlWnikt 578 (775)
T KOG0319|consen 500 VLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGH-TSAVLRASFIRNGKQLISAGADGLIKLWNIKT 578 (775)
T ss_pred EeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCc-cceeEeeeeeeCCcEEEeccCCCcEEEEeccc
Confidence 99999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred Cceeeee
Q 019405 333 RQLLSAV 339 (341)
Q Consensus 333 ~~~~~~~ 339 (341)
+.|+.++
T Consensus 579 ~eC~~tl 585 (775)
T KOG0319|consen 579 NECEMTL 585 (775)
T ss_pred hhhhhhh
Confidence 9998765
No 18
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=7.4e-38 Score=242.48 Aligned_cols=268 Identities=14% Similarity=0.212 Sum_probs=222.8
Q ss_pred CCCCceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchhe
Q 019405 11 GCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVA 90 (341)
Q Consensus 11 ~~~~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 90 (341)
+-..-.+++|..|.+|++|+..+- ..+..+.+|.++|.|+.|.. ..+++|+.|.+|+|||+++++++++
T Consensus 204 QYDD~kiVSGlrDnTikiWD~n~~-----~c~~~L~GHtGSVLCLqyd~------rviisGSSDsTvrvWDv~tge~l~t 272 (499)
T KOG0281|consen 204 QYDDEKIVSGLRDNTIKIWDKNSL-----ECLKILTGHTGSVLCLQYDE------RVIVSGSSDSTVRVWDVNTGEPLNT 272 (499)
T ss_pred EecchhhhcccccCceEEeccccH-----HHHHhhhcCCCcEEeeeccc------eEEEecCCCceEEEEeccCCchhhH
Confidence 334456788999999999998887 56677889999999998763 2699999999999999999999999
Q ss_pred eeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEe
Q 019405 91 ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV 170 (341)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~ 170 (341)
+-.| .+.+..+.+.+. .+++++.|+++.+|++...... +++-.-..|...|..+.|
T Consensus 273 lihH--------ceaVLhlrf~ng----------~mvtcSkDrsiaVWdm~sps~i------t~rrVLvGHrAaVNvVdf 328 (499)
T KOG0281|consen 273 LIHH--------CEAVLHLRFSNG----------YMVTCSKDRSIAVWDMASPTDI------TLRRVLVGHRAAVNVVDF 328 (499)
T ss_pred Hhhh--------cceeEEEEEeCC----------EEEEecCCceeEEEeccCchHH------HHHHHHhhhhhheeeecc
Confidence 8874 366777766432 9999999999999998654322 222222356678888888
Q ss_pred cCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCce
Q 019405 171 DISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP 250 (341)
Q Consensus 171 ~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 250 (341)
+ .+++++++.|.+|++|++.+++.++.+.+|. ..|-|+.+ .++++++|+.|.+|++||+..+.+
T Consensus 329 d--~kyIVsASgDRTikvW~~st~efvRtl~gHk---------RGIAClQY----r~rlvVSGSSDntIRlwdi~~G~c- 392 (499)
T KOG0281|consen 329 D--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHK---------RGIACLQY----RDRLVVSGSSDNTIRLWDIECGAC- 392 (499)
T ss_pred c--cceEEEecCCceEEEEeccceeeehhhhccc---------ccceehhc----cCeEEEecCCCceEEEEeccccHH-
Confidence 5 5699999999999999999999999999876 44888877 789999999999999999999886
Q ss_pred eEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCe---------EEeEEeccccCceeEEEecCCCCEEEEEeC
Q 019405 251 VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK---------LLGCFIGKCSGSIRSIARHPTLPIIASCGL 321 (341)
Q Consensus 251 ~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~---------~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 321 (341)
++.+.+|+.-|.++.| +.+.+++|.+||+|++||+..+. ++..+..| .+.|..+.| |...+++++.
T Consensus 393 LRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~h-sgRVFrLQF--D~fqIvsssH 467 (499)
T KOG0281|consen 393 LRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEH-SGRVFRLQF--DEFQIISSSH 467 (499)
T ss_pred HHHHhchHHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhc-cceeEEEee--cceEEEeccC
Confidence 8999999999999999 45689999999999999998753 34445555 889999999 5678999999
Q ss_pred CCcEEEEEcCCCc
Q 019405 322 DSYLRFWDIKTRQ 334 (341)
Q Consensus 322 dg~v~iwd~~~~~ 334 (341)
|.+|.|||..++-
T Consensus 468 ddtILiWdFl~~~ 480 (499)
T KOG0281|consen 468 DDTILIWDFLNGP 480 (499)
T ss_pred CCeEEEEEcCCCC
Confidence 9999999987764
No 19
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=4.7e-35 Score=235.00 Aligned_cols=277 Identities=16% Similarity=0.167 Sum_probs=225.0
Q ss_pred eecCCCCeEEEEEecC-ccCcccee----eeccC----CCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchh
Q 019405 19 TFDSLGLIKVIEARGE-HGGVPKVV----ERWGD----PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRV 89 (341)
Q Consensus 19 ~~~~~g~i~~~~~~~~-~~g~~~~~----~~~~~----~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~ 89 (341)
+++.+-.-++|++... -.+...++ ..+++ ....|++++|+.++. +||+|..||.++||+. +|..+.
T Consensus 196 sg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~----~LatG~~~G~~riw~~-~G~l~~ 270 (524)
T KOG0273|consen 196 SGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGT----LLATGSEDGEARIWNK-DGNLIS 270 (524)
T ss_pred ccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCC----eEEEeecCcEEEEEec-Cchhhh
Confidence 4555556688988862 11111111 11222 335688888887777 8999999999999998 577777
Q ss_pred eeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEE
Q 019405 90 AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSK 169 (341)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~ 169 (341)
++.. |.++|.++.|..... ++++++.|+++.+||...+ +++.-...+..+-..+.
T Consensus 271 tl~~--------HkgPI~slKWnk~G~--------yilS~~vD~ttilwd~~~g---------~~~q~f~~~s~~~lDVd 325 (524)
T KOG0273|consen 271 TLGQ--------HKGPIFSLKWNKKGT--------YILSGGVDGTTILWDAHTG---------TVKQQFEFHSAPALDVD 325 (524)
T ss_pred hhhc--------cCCceEEEEEcCCCC--------EEEeccCCccEEEEeccCc---------eEEEeeeeccCCccceE
Confidence 7776 558899999987777 9999999999999997432 33332223444445566
Q ss_pred ecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCc
Q 019405 170 VDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR 249 (341)
Q Consensus 170 ~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 249 (341)
|- +...+++++.|+.|+++.+....+..++.+|. +.|.++.| +|.+.+|++++.|++++||.+.....
T Consensus 326 W~-~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~---------g~V~alk~--n~tg~LLaS~SdD~TlkiWs~~~~~~ 393 (524)
T KOG0273|consen 326 WQ-SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHH---------GEVNALKW--NPTGSLLASCSDDGTLKIWSMGQSNS 393 (524)
T ss_pred Ee-cCceEeecCCCceEEEEEecCCCcceeeeccc---------CceEEEEE--CCCCceEEEecCCCeeEeeecCCCcc
Confidence 64 34578999999999999999888888888865 66999999 89999999999999999999887654
Q ss_pred eeEEEEecCCCeEEEEEcCCC---------ceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEe
Q 019405 250 PVMSFDFRETPIKAVAEEPDS---------FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG 320 (341)
Q Consensus 250 ~~~~~~~~~~~v~~~~~~~~~---------~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 320 (341)
...+..|...|..+.|+|.| ..+++++.|++|++||+..+.+++.|..| ..+|++++|+|+|+++|+|+
T Consensus 394 -~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH-~~pVysvafS~~g~ylAsGs 471 (524)
T KOG0273|consen 394 -VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKH-QEPVYSVAFSPNGRYLASGS 471 (524)
T ss_pred -hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccC-CCceEEEEecCCCcEEEecC
Confidence 88899999999999999964 47899999999999999999999999998 99999999999999999999
Q ss_pred CCCcEEEEEcCCCceeeee
Q 019405 321 LDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 321 ~dg~v~iwd~~~~~~~~~~ 339 (341)
.||.|.+|++++++.++.+
T Consensus 472 ~dg~V~iws~~~~~l~~s~ 490 (524)
T KOG0273|consen 472 LDGCVHIWSTKTGKLVKSY 490 (524)
T ss_pred CCCeeEeccccchheeEee
Confidence 9999999999999988765
No 20
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=5e-36 Score=232.96 Aligned_cols=257 Identities=14% Similarity=0.256 Sum_probs=223.3
Q ss_pred cceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccc
Q 019405 39 PKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREE 118 (341)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (341)
|++...+.+|.+-|.++++-|... +|++|+.|++|+|||+.+|+...++.+| -..+..+++.+.+.
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~n~----wf~tgs~DrtikIwDlatg~LkltltGh--------i~~vr~vavS~rHp-- 206 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPGNE----WFATGSADRTIKIWDLATGQLKLTLTGH--------IETVRGVAVSKRHP-- 206 (460)
T ss_pred ceehhhhhhccceEEEEeeCCCce----eEEecCCCceeEEEEcccCeEEEeecch--------hheeeeeeecccCc--
Confidence 344445667889999999877655 9999999999999999999999998874 35566777777666
Q ss_pred cccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceee
Q 019405 119 SSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIW 198 (341)
Q Consensus 119 ~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~ 198 (341)
++++++.|+.++.||++..+ .|+-|. .|-..|.|++.+|.-..|++|+.|.++++||+++...+.
T Consensus 207 ------YlFs~gedk~VKCwDLe~nk--------vIR~Yh-GHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~ 271 (460)
T KOG0285|consen 207 ------YLFSAGEDKQVKCWDLEYNK--------VIRHYH-GHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVH 271 (460)
T ss_pred ------eEEEecCCCeeEEEechhhh--------hHHHhc-cccceeEEEeccccceeEEecCCcceEEEeeecccceEE
Confidence 99999999999999998655 455554 356789999999999999999999999999999999999
Q ss_pred ecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeC
Q 019405 199 TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG 278 (341)
Q Consensus 199 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~ 278 (341)
.+.+|. ..|.++.+ .|-...+++|+.|++|++||++.++. ...+..|...+.+++.+|....+|+++.
T Consensus 272 ~l~GH~---------~~V~~V~~--~~~dpqvit~S~D~tvrlWDl~agkt-~~tlt~hkksvral~lhP~e~~fASas~ 339 (460)
T KOG0285|consen 272 VLSGHT---------NPVASVMC--QPTDPQVITGSHDSTVRLWDLRAGKT-MITLTHHKKSVRALCLHPKENLFASASP 339 (460)
T ss_pred EecCCC---------CcceeEEe--ecCCCceEEecCCceEEEeeeccCce-eEeeecccceeeEEecCCchhhhhccCC
Confidence 999876 56888888 67788999999999999999999876 8888889999999999999988888887
Q ss_pred CCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 279 SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 279 dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
| .|+-|++..|..+..+.+| .+-|++++.+.|+ ++++|++.|.+.+||.++|...+.+
T Consensus 340 d-nik~w~~p~g~f~~nlsgh-~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~ 397 (460)
T KOG0285|consen 340 D-NIKQWKLPEGEFLQNLSGH-NAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRG 397 (460)
T ss_pred c-cceeccCCccchhhccccc-cceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccc
Confidence 6 6999999999999999998 8999999998776 7889999999999999998776654
No 21
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=2.1e-34 Score=224.39 Aligned_cols=278 Identities=16% Similarity=0.130 Sum_probs=225.2
Q ss_pred eeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccC
Q 019405 16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAG 95 (341)
Q Consensus 16 ~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 95 (341)
.+++|+.|..--+|++.+. .....+.+|..+|+++.||.++. +||||+.+|.|+||...++.....+..
T Consensus 78 l~aTGGgDD~AflW~~~~g-----e~~~eltgHKDSVt~~~Fshdgt----lLATGdmsG~v~v~~~stg~~~~~~~~-- 146 (399)
T KOG0296|consen 78 LVATGGGDDLAFLWDISTG-----EFAGELTGHKDSVTCCSFSHDGT----LLATGDMSGKVLVFKVSTGGEQWKLDQ-- 146 (399)
T ss_pred eEEecCCCceEEEEEccCC-----cceeEecCCCCceEEEEEccCce----EEEecCCCccEEEEEcccCceEEEeec--
Confidence 3568889999999999987 45667889999999999999888 999999999999999999887777652
Q ss_pred CCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCC
Q 019405 96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK 175 (341)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~ 175 (341)
....+.-+.|.+... .|++|+.||.+.+|.+... +..+++.- |..++.+=.|.|+|+
T Consensus 147 ------e~~dieWl~WHp~a~--------illAG~~DGsvWmw~ip~~--------~~~kv~~G-h~~~ct~G~f~pdGK 203 (399)
T KOG0296|consen 147 ------EVEDIEWLKWHPRAH--------ILLAGSTDGSVWMWQIPSQ--------ALCKVMSG-HNSPCTCGEFIPDGK 203 (399)
T ss_pred ------ccCceEEEEeccccc--------EEEeecCCCcEEEEECCCc--------ceeeEecC-CCCCcccccccCCCc
Confidence 125566666666544 9999999999999998643 35666664 778899999999999
Q ss_pred EEEEeeCCCeEEEEECCCCceeeecCCCCCCc------------------------------------------cCccCC
Q 019405 176 FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNS------------------------------------------LGIFTP 213 (341)
Q Consensus 176 ~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~------------------------------------------~~~~~~ 213 (341)
.++++..||+|++||+.+++++..+....... +...+.
T Consensus 204 r~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e 283 (399)
T KOG0296|consen 204 RILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQE 283 (399)
T ss_pred eEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccch
Confidence 99999999999999999998877665211000 000111
Q ss_pred eeeeEEEEEe-cCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeE
Q 019405 214 TWFTSAAFLS-IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL 292 (341)
Q Consensus 214 ~~v~~~~~~~-~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~ 292 (341)
..+.++.+.| +..-.+.|+|+.||+|.|||+.... ++..-.|..+|..+.|-+ ..+|++++.+|.|+.||.++|++
T Consensus 284 ~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~--~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l 360 (399)
T KOG0296|consen 284 ELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST--LRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQL 360 (399)
T ss_pred hhhhhhhhcccccccchhhcccccceEEEEecccch--hheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccce
Confidence 2233333321 2334678899999999999999744 555566999999999998 67999999999999999999999
Q ss_pred EeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcC
Q 019405 293 LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331 (341)
Q Consensus 293 ~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~ 331 (341)
+..+.+| ...|.+++++|+.++++|+|.|+..+||++.
T Consensus 361 ~~~y~GH-~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 361 KFTYTGH-QMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEEecC-chheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 9999999 9999999999999999999999999999875
No 22
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=5.4e-34 Score=211.34 Aligned_cols=255 Identities=11% Similarity=0.100 Sum_probs=203.7
Q ss_pred eeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCC
Q 019405 17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGD 96 (341)
Q Consensus 17 ~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 96 (341)
.++....-.||++++... .+.++.+|.+|...|+++.|-.+++ ++++|+.||+++|||++...+.+.++..
T Consensus 54 ~LAaa~~qhvRlyD~~S~---np~Pv~t~e~h~kNVtaVgF~~dgr----WMyTgseDgt~kIWdlR~~~~qR~~~~~-- 124 (311)
T KOG0315|consen 54 DLAAAGNQHVRLYDLNSN---NPNPVATFEGHTKNVTAVGFQCDGR----WMYTGSEDGTVKIWDLRSLSCQRNYQHN-- 124 (311)
T ss_pred hhhhccCCeeEEEEccCC---CCCceeEEeccCCceEEEEEeecCe----EEEecCCCceEEEEeccCcccchhccCC--
Confidence 344444556789998876 2236779999999999999988877 9999999999999999987766666642
Q ss_pred CCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCE
Q 019405 97 SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKF 176 (341)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~ 176 (341)
.++.++...+... .|+++..+|.|++||+.... ..+..-.+....|.++.+.|||.+
T Consensus 125 -------spVn~vvlhpnQt--------eLis~dqsg~irvWDl~~~~--------c~~~liPe~~~~i~sl~v~~dgsm 181 (311)
T KOG0315|consen 125 -------SPVNTVVLHPNQT--------ELISGDQSGNIRVWDLGENS--------CTHELIPEDDTSIQSLTVMPDGSM 181 (311)
T ss_pred -------CCcceEEecCCcc--------eEEeecCCCcEEEEEccCCc--------cccccCCCCCcceeeEEEcCCCcE
Confidence 6788888888777 99999999999999997543 112222233467999999999999
Q ss_pred EEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEe
Q 019405 177 SLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF 256 (341)
Q Consensus 177 l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 256 (341)
++.+...|..++|++-+.+....+....+ + ..|...+..+.+ +|++++|++++.|.+++||+..+.-+....+++
T Consensus 182 l~a~nnkG~cyvW~l~~~~~~s~l~P~~k--~-~ah~~~il~C~l--SPd~k~lat~ssdktv~iwn~~~~~kle~~l~g 256 (311)
T KOG0315|consen 182 LAAANNKGNCYVWRLLNHQTASELEPVHK--F-QAHNGHILRCLL--SPDVKYLATCSSDKTVKIWNTDDFFKLELVLTG 256 (311)
T ss_pred EEEecCCccEEEEEccCCCccccceEhhh--e-ecccceEEEEEE--CCCCcEEEeecCCceEEEEecCCceeeEEEeec
Confidence 99999999999999976543333322211 1 114567888899 999999999999999999999987344677889
Q ss_pred cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEe
Q 019405 257 RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIAR 309 (341)
Q Consensus 257 ~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~ 309 (341)
|+..++.++||.+|++|++|+.|+.+++||+..++.+..+.+|+. ...+++.
T Consensus 257 h~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K-~~vc~~l 308 (311)
T KOG0315|consen 257 HQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHK-AAVCVAL 308 (311)
T ss_pred CCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCccc-ccEEEEe
Confidence 999999999999999999999999999999999999999999954 4445544
No 23
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.4e-34 Score=241.66 Aligned_cols=275 Identities=11% Similarity=0.113 Sum_probs=227.0
Q ss_pred eeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcc----hhee
Q 019405 16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL----RVAI 91 (341)
Q Consensus 16 ~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~----~~~~ 91 (341)
.+..++..+.+|+++.... -..-+.+|...+.++.....+ .+|++|+.|.++++|.++++.. +...
T Consensus 338 ~laVATNs~~lr~y~~~~~------~c~ii~GH~e~vlSL~~~~~g----~llat~sKD~svilWr~~~~~~~~~~~a~~ 407 (775)
T KOG0319|consen 338 HLAVATNSPELRLYTLPTS------YCQIIPGHTEAVLSLDVWSSG----DLLATGSKDKSVILWRLNNNCSKSLCVAQA 407 (775)
T ss_pred eEEEEeCCCceEEEecCCC------ceEEEeCchhheeeeeecccC----cEEEEecCCceEEEEEecCCcchhhhhhhh
Confidence 3455667788899866654 122578899999888744333 4899999999999998854432 2222
Q ss_pred eccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEE----EEeecCCceEE
Q 019405 92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKS----WNVCASGTIAF 167 (341)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~----~~~~~~~~i~~ 167 (341)
. .|...+.+++..... ...|++++.|.++++|++...+... .++.+ -...|...|.+
T Consensus 408 ~--------gH~~svgava~~~~~-------asffvsvS~D~tlK~W~l~~s~~~~----~~~~~~~~~t~~aHdKdIN~ 468 (775)
T KOG0319|consen 408 N--------GHTNSVGAVAGSKLG-------ASFFVSVSQDCTLKLWDLPKSKETA----FPIVLTCRYTERAHDKDINC 468 (775)
T ss_pred c--------ccccccceeeecccC-------ccEEEEecCCceEEEecCCCccccc----ccceehhhHHHHhhcccccc
Confidence 3 355667777663322 2399999999999999997733211 12222 23457889999
Q ss_pred EEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCC
Q 019405 168 SKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ 247 (341)
Q Consensus 168 ~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 247 (341)
++++|+.+++|+||.|.+.++|++++.+....+.+|. ..|.++.| ++....+++++.|++|+||.+.+.
T Consensus 469 Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~---------RGvw~V~F--s~~dq~laT~SgD~TvKIW~is~f 537 (775)
T KOG0319|consen 469 VAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHT---------RGVWCVSF--SKNDQLLATCSGDKTVKIWSISTF 537 (775)
T ss_pred eEecCCCceEEecccccceeeecccCceEEEEeeCCc---------cceEEEEe--ccccceeEeccCCceEEEEEeccc
Confidence 9999999999999999999999999999999999876 55999999 889999999999999999999998
Q ss_pred CceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEE
Q 019405 248 RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRF 327 (341)
Q Consensus 248 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~i 327 (341)
.+ ++++.+|...|..+.|-.++..|++++.||.|++|++.+++++.++..| ++.|++++-+|....++||+.||.|.+
T Consensus 538 SC-lkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H-~DrvWaL~~~~~~~~~~tgg~Dg~i~~ 615 (775)
T KOG0319|consen 538 SC-LKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAH-NDRVWALSVSPLLDMFVTGGGDGRIIF 615 (775)
T ss_pred ee-eeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhc-cceeEEEeecCccceeEecCCCeEEEE
Confidence 76 9999999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred EEcCC
Q 019405 328 WDIKT 332 (341)
Q Consensus 328 wd~~~ 332 (341)
|.=.|
T Consensus 616 wkD~T 620 (775)
T KOG0319|consen 616 WKDVT 620 (775)
T ss_pred eecCc
Confidence 96443
No 24
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-34 Score=238.76 Aligned_cols=255 Identities=17% Similarity=0.236 Sum_probs=220.1
Q ss_pred eccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccccccc
Q 019405 44 RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS 123 (341)
Q Consensus 44 ~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (341)
++..+...|.++. .+|..++++++-.+|.|.|||.++...++.+.. .+.++....+....+
T Consensus 8 k~~~rSdRVKsVd----~HPtePw~la~LynG~V~IWnyetqtmVksfeV--------~~~PvRa~kfiaRkn------- 68 (794)
T KOG0276|consen 8 KFQSRSDRVKSVD----FHPTEPWILAALYNGDVQIWNYETQTMVKSFEV--------SEVPVRAAKFIARKN------- 68 (794)
T ss_pred HhhccCCceeeee----cCCCCceEEEeeecCeeEEEecccceeeeeeee--------cccchhhheeeeccc-------
Confidence 3444566666554 566677999999999999999999988888876 346677777777666
Q ss_pred ceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCC-ceeeecCC
Q 019405 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC-EKIWTAKP 202 (341)
Q Consensus 124 ~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~-~~~~~~~~ 202 (341)
.+++|+.|..++|++.+... .++.|.+ |..-|.+++.+|...++++++.|-+|++||.+.. .+.+.+.+
T Consensus 69 -Wiv~GsDD~~IrVfnynt~e--------kV~~FeA-H~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeG 138 (794)
T KOG0276|consen 69 -WIVTGSDDMQIRVFNYNTGE--------KVKTFEA-HSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEG 138 (794)
T ss_pred -eEEEecCCceEEEEecccce--------eeEEeec-cccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcC
Confidence 99999999999999988655 7888886 7889999999999999999999999999999864 55666777
Q ss_pred CCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCC--ceEEEEeCCC
Q 019405 203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS--FNIYIGNGSG 280 (341)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~g~~dg 280 (341)
|. ..|.+++|. +.|.+.+++++-|++|++|.+.... +..++.+|+..|+++.+-+.| .+|++|+.|.
T Consensus 139 H~---------HyVMqv~fn-PkD~ntFaS~sLDrTVKVWslgs~~-~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~ 207 (794)
T KOG0276|consen 139 HE---------HYVMQVAFN-PKDPNTFASASLDRTVKVWSLGSPH-PNFTLEGHEKGVNCVDYYTGGDKPYLISGADDL 207 (794)
T ss_pred cc---------eEEEEEEec-CCCccceeeeeccccEEEEEcCCCC-CceeeeccccCcceEEeccCCCcceEEecCCCc
Confidence 54 789999996 4577899999999999999998754 689999999999999998754 7999999999
Q ss_pred CEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 281 DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 281 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
.|+|||.++..+++++.+| ...|..+.|+|.-+++++||.||++|||+..|-+...++
T Consensus 208 tiKvWDyQtk~CV~TLeGH-t~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tL 265 (794)
T KOG0276|consen 208 TIKVWDYQTKSCVQTLEGH-TNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTL 265 (794)
T ss_pred eEEEeecchHHHHHHhhcc-cccceEEEecCCCcEEEEecCCccEEEecCcceehhhhh
Confidence 9999999999999999999 999999999999999999999999999999887665443
No 25
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.1e-35 Score=234.63 Aligned_cols=247 Identities=15% Similarity=0.179 Sum_probs=211.9
Q ss_pred CCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEE
Q 019405 50 SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC 129 (341)
Q Consensus 50 ~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (341)
.+|..+.+. |+|..|++|+..|.+.+|+...-.....++. |+.+|.++.|..... .++++
T Consensus 97 c~V~~v~Wt----PeGRRLltgs~SGEFtLWNg~~fnFEtilQa--------HDs~Vr~m~ws~~g~--------wmiSg 156 (464)
T KOG0284|consen 97 CPVNVVRWT----PEGRRLLTGSQSGEFTLWNGTSFNFETILQA--------HDSPVRTMKWSHNGT--------WMISG 156 (464)
T ss_pred cceeeEEEc----CCCceeEeecccccEEEecCceeeHHHHhhh--------hcccceeEEEccCCC--------EEEEc
Confidence 345555555 4455899999999999999855444333333 678888999888777 99999
Q ss_pred cccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccC
Q 019405 130 TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLG 209 (341)
Q Consensus 130 ~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~ 209 (341)
..+|.|++|+.+.. .++.....+...|.+++|+|+...+++++.||+|+|||....++...+.+|.
T Consensus 157 D~gG~iKyWqpnmn---------nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHg----- 222 (464)
T KOG0284|consen 157 DKGGMIKYWQPNMN---------NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHG----- 222 (464)
T ss_pred CCCceEEecccchh---------hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCC-----
Confidence 99999999997544 4566677777899999999999999999999999999999888877777765
Q ss_pred ccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCC
Q 019405 210 IFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT 289 (341)
Q Consensus 210 ~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~ 289 (341)
--|.++.| +|...+|++++.|..|++||.+++++ +.++..|+..|..+.|+|++.+|++++.|..++++|+++
T Consensus 223 ----wdVksvdW--HP~kgLiasgskDnlVKlWDprSg~c-l~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~ 295 (464)
T KOG0284|consen 223 ----WDVKSVDW--HPTKGLIASGSKDNLVKLWDPRSGSC-LATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRT 295 (464)
T ss_pred ----CCcceecc--CCccceeEEccCCceeEeecCCCcch-hhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhH
Confidence 34899999 78899999999999999999999886 899999999999999999999999999999999999999
Q ss_pred CeEEeEEeccccCceeEEEecCCC-CEEEEEeCCCcEEEEEcCCCceeee
Q 019405 290 GKLLGCFIGKCSGSIRSIARHPTL-PIIASCGLDSYLRFWDIKTRQLLSA 338 (341)
Q Consensus 290 ~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~ 338 (341)
.+.++++++| ...|+++.|+|-. .+|.+|+.||.|..|.+...+++..
T Consensus 296 mkEl~~~r~H-kkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~ 344 (464)
T KOG0284|consen 296 MKELFTYRGH-KKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGE 344 (464)
T ss_pred hHHHHHhhcc-hhhheeeccccccccceeeccCCCceEEEeccccccccC
Confidence 9999999998 9999999999954 5889999999999999885555443
No 26
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=4.9e-35 Score=235.61 Aligned_cols=270 Identities=15% Similarity=0.188 Sum_probs=224.2
Q ss_pred eeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccC
Q 019405 16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAG 95 (341)
Q Consensus 16 ~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 95 (341)
-+++++.||.|++|++++. + .++.+|.+|..+|..++|+.++. .+++++.|+.|++||+++|+++..+..-
T Consensus 229 LlLS~gmD~~vklW~vy~~--~--~~lrtf~gH~k~Vrd~~~s~~g~----~fLS~sfD~~lKlwDtETG~~~~~f~~~- 299 (503)
T KOG0282|consen 229 LLLSGGMDGLVKLWNVYDD--R--RCLRTFKGHRKPVRDASFNNCGT----SFLSASFDRFLKLWDTETGQVLSRFHLD- 299 (503)
T ss_pred EEEecCCCceEEEEEEecC--c--ceehhhhcchhhhhhhhccccCC----eeeeeecceeeeeeccccceEEEEEecC-
Confidence 3688999999999999995 3 68889999999999999998887 7999999999999999999999888762
Q ss_pred CCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCC
Q 019405 96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK 175 (341)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~ 175 (341)
..+.|+.+.+.+.+ .+++|..|+.|..||++.++ .+..++ .|-+.|..+.|-+++.
T Consensus 300 --------~~~~cvkf~pd~~n-------~fl~G~sd~ki~~wDiRs~k--------vvqeYd-~hLg~i~~i~F~~~g~ 355 (503)
T KOG0282|consen 300 --------KVPTCVKFHPDNQN-------IFLVGGSDKKIRQWDIRSGK--------VVQEYD-RHLGAILDITFVDEGR 355 (503)
T ss_pred --------CCceeeecCCCCCc-------EEEEecCCCcEEEEeccchH--------HHHHHH-hhhhheeeeEEccCCc
Confidence 44555555555433 99999999999999998665 333444 3567899999999999
Q ss_pred EEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCC--ceeEE
Q 019405 176 FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR--RPVMS 253 (341)
Q Consensus 176 ~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~ 253 (341)
++++.+.|+.++||+.+....+.....+.. ....++.. +|++++++.-+.|+.|.+|.+...- ...+.
T Consensus 356 rFissSDdks~riWe~~~~v~ik~i~~~~~--------hsmP~~~~--~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~ 425 (503)
T KOG0282|consen 356 RFISSSDDKSVRIWENRIPVPIKNIADPEM--------HTMPCLTL--HPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKR 425 (503)
T ss_pred eEeeeccCccEEEEEcCCCccchhhcchhh--------ccCcceec--CCCCCeehhhccCceEEEEecccccccCHhhh
Confidence 999999999999999988766655444322 22556777 8899999999999999999865421 12455
Q ss_pred EEecCC--CeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCC-EEEEEeCCCcEEEEE
Q 019405 254 FDFRET--PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP-IIASCGLDSYLRFWD 329 (341)
Q Consensus 254 ~~~~~~--~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~dg~v~iwd 329 (341)
+.+|.. .-..+.|||||.+|++|+.||.+.+||.++-+++..++.| ..++..+.|+|... .+|+++.||.|++||
T Consensus 426 feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah-~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 426 FEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAH-DQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred hcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccC-CcceEEEEecCCCcceeEecccCceeEecC
Confidence 667643 3456899999999999999999999999999999999998 99999999999664 899999999999996
No 27
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2.3e-32 Score=225.24 Aligned_cols=268 Identities=19% Similarity=0.260 Sum_probs=222.8
Q ss_pred ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 94 (341)
-.+++++.+|.+++|++... +....+..|...+..+.++++.. +|++++.||.|++|++.+++....+..
T Consensus 22 ~~l~~~~~~g~i~i~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~----~l~~~~~~~~i~i~~~~~~~~~~~~~~- 91 (289)
T cd00200 22 KLLATGSGDGTIKVWDLETG-----ELLRTLKGHTGPVRDVAASADGT----YLASGSSDKTIRLWDLETGECVRTLTG- 91 (289)
T ss_pred CEEEEeecCcEEEEEEeeCC-----CcEEEEecCCcceeEEEECCCCC----EEEEEcCCCeEEEEEcCcccceEEEec-
Confidence 45777888999999999876 34556667888887888887664 799999999999999998777666664
Q ss_pred CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC
Q 019405 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (341)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~ 174 (341)
+...+.++.+.+... .+++++.+|.+.+|++.... .+..+. .+...+.++.++|++
T Consensus 92 -------~~~~i~~~~~~~~~~--------~~~~~~~~~~i~~~~~~~~~--------~~~~~~-~~~~~i~~~~~~~~~ 147 (289)
T cd00200 92 -------HTSYVSSVAFSPDGR--------ILSSSSRDKTIKVWDVETGK--------CLTTLR-GHTDWVNSVAFSPDG 147 (289)
T ss_pred -------cCCcEEEEEEcCCCC--------EEEEecCCCeEEEEECCCcE--------EEEEec-cCCCcEEEEEEcCcC
Confidence 345788888776643 77777779999999986322 334444 356789999999999
Q ss_pred CEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEE
Q 019405 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF 254 (341)
Q Consensus 175 ~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 254 (341)
.++++++.++.|++||+++++....+..+. ..+.++.| .|+++.+++++.|+.|++||++.++ ++..+
T Consensus 148 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~---------~~i~~~~~--~~~~~~l~~~~~~~~i~i~d~~~~~-~~~~~ 215 (289)
T cd00200 148 TFVASSSQDGTIKLWDLRTGKCVATLTGHT---------GEVNSVAF--SPDGEKLLSSSSDGTIKLWDLSTGK-CLGTL 215 (289)
T ss_pred CEEEEEcCCCcEEEEEccccccceeEecCc---------cccceEEE--CCCcCEEEEecCCCcEEEEECCCCc-eecch
Confidence 999988889999999999887777666432 46899999 8899899999999999999999755 37777
Q ss_pred EecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEE
Q 019405 255 DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWD 329 (341)
Q Consensus 255 ~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd 329 (341)
..|...+.++.|+|++.++++++.++.|++||+.+++.+..+..| ...|.+++|+|++++|++++.|+.|++|+
T Consensus 216 ~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 216 RGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH-TNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred hhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcccc-CCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 778889999999999888888888999999999999999989877 88999999999999999999999999996
No 28
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.1e-34 Score=224.53 Aligned_cols=272 Identities=14% Similarity=0.120 Sum_probs=226.3
Q ss_pred eeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCC
Q 019405 17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGD 96 (341)
Q Consensus 17 ~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 96 (341)
+.+++.|.+..+|.+... +..++..++-+|..+|..+.||||+. +|++++.|..+++||+.+|.....+..
T Consensus 239 LAsaSkD~Taiiw~v~~d--~~~kl~~tlvgh~~~V~yi~wSPDdr----yLlaCg~~e~~~lwDv~tgd~~~~y~~--- 309 (519)
T KOG0293|consen 239 LASASKDSTAIIWIVVYD--VHFKLKKTLVGHSQPVSYIMWSPDDR----YLLACGFDEVLSLWDVDTGDLRHLYPS--- 309 (519)
T ss_pred EeeccCCceEEEEEEecC--cceeeeeeeecccCceEEEEECCCCC----eEEecCchHheeeccCCcchhhhhccc---
Confidence 445555666688888876 44677889999999999999999888 899999999999999999999888776
Q ss_pred CCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCE
Q 019405 97 SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKF 176 (341)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~ 176 (341)
..+..+.+.+|++... .+++|+.|+.+..|+++.. .+..|.-.....|.++++.+||++
T Consensus 310 ----~~~~S~~sc~W~pDg~--------~~V~Gs~dr~i~~wdlDgn---------~~~~W~gvr~~~v~dlait~Dgk~ 368 (519)
T KOG0293|consen 310 ----GLGFSVSSCAWCPDGF--------RFVTGSPDRTIIMWDLDGN---------ILGNWEGVRDPKVHDLAITYDGKY 368 (519)
T ss_pred ----CcCCCcceeEEccCCc--------eeEecCCCCcEEEecCCcc---------hhhcccccccceeEEEEEcCCCcE
Confidence 2346788888888877 8999999999999998543 355677666677999999999999
Q ss_pred EEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEe
Q 019405 177 SLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF 256 (341)
Q Consensus 177 l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 256 (341)
+++.+.|..|++|+.++.........+ .+|++... +.+++++++.-.+..+++||+.... .++.+.+
T Consensus 369 vl~v~~d~~i~l~~~e~~~dr~lise~----------~~its~~i--S~d~k~~LvnL~~qei~LWDl~e~~-lv~kY~G 435 (519)
T KOG0293|consen 369 VLLVTVDKKIRLYNREARVDRGLISEE----------QPITSFSI--SKDGKLALVNLQDQEIHLWDLEENK-LVRKYFG 435 (519)
T ss_pred EEEEecccceeeechhhhhhhcccccc----------CceeEEEE--cCCCcEEEEEcccCeeEEeecchhh-HHHHhhc
Confidence 999999999999999875544333332 44888888 8999999999999999999999654 4788888
Q ss_pred cCCC--eEEEEEcC-CCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCC-EEEEEeCCCcEEEEEcCC
Q 019405 257 RETP--IKAVAEEP-DSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP-IIASCGLDSYLRFWDIKT 332 (341)
Q Consensus 257 ~~~~--v~~~~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~dg~v~iwd~~~ 332 (341)
|... +-.-+|.. +..++++|+.|+.|+||+..+++++..+.|| ...|++++|+|..+ .+|++|.||+||||....
T Consensus 436 hkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGH-s~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 436 HKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGH-SKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred ccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCC-cceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 7654 33345644 4489999999999999999999999999999 99999999999765 799999999999998764
No 29
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-33 Score=208.13 Aligned_cols=251 Identities=17% Similarity=0.220 Sum_probs=211.1
Q ss_pred eeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccc
Q 019405 43 ERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSR 122 (341)
Q Consensus 43 ~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (341)
..+..++++|.++.|+.+++ |.++++.|.+|++|++..+.+++++.+| ..++..++....+.
T Consensus 11 ~~l~~~qgaV~avryN~dGn----Y~ltcGsdrtvrLWNp~rg~liktYsgh--------G~EVlD~~~s~Dns------ 72 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDGN----YCLTCGSDRTVRLWNPLRGALIKTYSGH--------GHEVLDAALSSDNS------ 72 (307)
T ss_pred eeecccccceEEEEEccCCC----EEEEcCCCceEEeecccccceeeeecCC--------Cceeeecccccccc------
Confidence 45677899999999998887 9999999999999999999999999984 46666666655555
Q ss_pred cceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCC--Cceeeec
Q 019405 123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDK--CEKIWTA 200 (341)
Q Consensus 123 ~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~--~~~~~~~ 200 (341)
.+++++.|..+.+||++.++ .++.|.. |.+.|..++|+.+...+++|+.|.++++||.++ .++++.+
T Consensus 73 --kf~s~GgDk~v~vwDV~TGk--------v~Rr~rg-H~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQil 141 (307)
T KOG0316|consen 73 --KFASCGGDKAVQVWDVNTGK--------VDRRFRG-HLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQIL 141 (307)
T ss_pred --ccccCCCCceEEEEEcccCe--------eeeeccc-ccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchh
Confidence 89999999999999998766 6778874 788999999999999999999999999999985 3455555
Q ss_pred CCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCC
Q 019405 201 KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG 280 (341)
Q Consensus 201 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg 280 (341)
.... ..|.++.. .+..+++|+.||++|.||++.+.. ...+ -..+|++++|+++++..++++.|+
T Consensus 142 dea~---------D~V~Si~v----~~heIvaGS~DGtvRtydiR~G~l-~sDy--~g~pit~vs~s~d~nc~La~~l~s 205 (307)
T KOG0316|consen 142 DEAK---------DGVSSIDV----AEHEIVAGSVDGTVRTYDIRKGTL-SSDY--FGHPITSVSFSKDGNCSLASSLDS 205 (307)
T ss_pred hhhc---------CceeEEEe----cccEEEeeccCCcEEEEEeeccee-ehhh--cCCcceeEEecCCCCEEEEeeccc
Confidence 4433 45888887 567899999999999999998764 3333 345899999999999999999999
Q ss_pred CEEEEECCCCeEEeEEeccccCcee--EEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 281 DLASVDIRTGKLLGCFIGKCSGSIR--SIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 281 ~i~iwd~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
++++.|-.+|+++..+++| .+.=+ ..+++....++++||+||.|++||+.....+..+
T Consensus 206 tlrLlDk~tGklL~sYkGh-kn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~ 265 (307)
T KOG0316|consen 206 TLRLLDKETGKLLKSYKGH-KNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKL 265 (307)
T ss_pred eeeecccchhHHHHHhccc-ccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeee
Confidence 9999999999999999998 44333 3456667779999999999999999988776654
No 30
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=5.5e-33 Score=211.24 Aligned_cols=268 Identities=17% Similarity=0.177 Sum_probs=221.8
Q ss_pred eeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccC
Q 019405 16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAG 95 (341)
Q Consensus 16 ~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 95 (341)
.+++++.|..|-+|+...+....+ .+.+|.++|.-+.|..|++ .|++++.|.+|+.||.++|+.....+.|.
T Consensus 61 ~~aSgG~Dr~I~LWnv~gdceN~~----~lkgHsgAVM~l~~~~d~s----~i~S~gtDk~v~~wD~~tG~~~rk~k~h~ 132 (338)
T KOG0265|consen 61 CFASGGSDRAIVLWNVYGDCENFW----VLKGHSGAVMELHGMRDGS----HILSCGTDKTVRGWDAETGKRIRKHKGHT 132 (338)
T ss_pred eEeecCCcceEEEEecccccccee----eeccccceeEeeeeccCCC----EEEEecCCceEEEEecccceeeehhcccc
Confidence 367888888999999887643333 4568999999999988888 89999999999999999999999988863
Q ss_pred CCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCC
Q 019405 96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK 175 (341)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~ 175 (341)
+-+..+.-...+. ..+.+++.|+++++||++... .++.+. ..-.++++.|..++.
T Consensus 133 --------~~vNs~~p~rrg~-------~lv~SgsdD~t~kl~D~R~k~--------~~~t~~--~kyqltAv~f~d~s~ 187 (338)
T KOG0265|consen 133 --------SFVNSLDPSRRGP-------QLVCSGSDDGTLKLWDIRKKE--------AIKTFE--NKYQLTAVGFKDTSD 187 (338)
T ss_pred --------ceeeecCccccCC-------eEEEecCCCceEEEEeecccc--------hhhccc--cceeEEEEEeccccc
Confidence 2233333111111 278889999999999997544 444442 234788999999999
Q ss_pred EEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCC---CceeE
Q 019405 176 FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ---RRPVM 252 (341)
Q Consensus 176 ~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~ 252 (341)
.+.+|+-|+.|++||++.......+.+|. ..|+.+.. +++|.++.+-+.|.++++||++.. ++.+.
T Consensus 188 qv~sggIdn~ikvWd~r~~d~~~~lsGh~---------DtIt~lsl--s~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~ 256 (338)
T KOG0265|consen 188 QVISGGIDNDIKVWDLRKNDGLYTLSGHA---------DTITGLSL--SRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVK 256 (338)
T ss_pred ceeeccccCceeeeccccCcceEEeeccc---------CceeeEEe--ccCCCccccccccceEEEEEecccCCCCceEE
Confidence 99999999999999999999999988865 66999999 899999999999999999999853 33467
Q ss_pred EEEecCC----CeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEE
Q 019405 253 SFDFRET----PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFW 328 (341)
Q Consensus 253 ~~~~~~~----~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iw 328 (341)
.+.+|.. ....++|+|++..+.+|+.|..+++||......++.+++| .+.|++++|+|..++|.+++.|.+|++=
T Consensus 257 if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh-~gsvn~~~Fhp~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 257 IFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGH-YGSVNEVDFHPTEPIILSCSSDKTIYLG 335 (338)
T ss_pred EeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCc-ceeEEEeeecCCCcEEEEeccCceeEee
Confidence 7776532 3456789999999999999999999999999999999999 9999999999999999999999998863
No 31
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.8e-32 Score=221.98 Aligned_cols=291 Identities=16% Similarity=0.150 Sum_probs=227.5
Q ss_pred CceeeeecCCCCeEEEEEecCccCccceeeecc---CCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchhe
Q 019405 14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWG---DPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVA 90 (341)
Q Consensus 14 ~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 90 (341)
.-++++.+.||++.+++-.+. +.+..+. +|.+.++.++|+||.. .+++++.|.+++|||+.+++++++
T Consensus 202 G~~Fat~gsDgki~iyDGktg-----e~vg~l~~~~aHkGsIfalsWsPDs~----~~~T~SaDkt~KIWdVs~~slv~t 272 (603)
T KOG0318|consen 202 GSRFATAGSDGKIYIYDGKTG-----EKVGELEDSDAHKGSIFALSWSPDST----QFLTVSADKTIKIWDVSTNSLVST 272 (603)
T ss_pred CCeEEEecCCccEEEEcCCCc-----cEEEEecCCCCccccEEEEEECCCCc----eEEEecCCceEEEEEeeccceEEE
Confidence 356778888888888776655 5566676 6999999999998888 799999999999999998877776
Q ss_pred eeccC-----------------------------------CCCCCCCCCceeeEeeeeccccccccccceeEEEccccee
Q 019405 91 ISNAG-----------------------------------DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKA 135 (341)
Q Consensus 91 ~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 135 (341)
+..-. ....++|.+.|+++...+... .+++++.||.+
T Consensus 273 ~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~--------~i~SgsyDG~I 344 (603)
T KOG0318|consen 273 WPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGK--------TIYSGSYDGHI 344 (603)
T ss_pred eecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCC--------EEEeeccCceE
Confidence 64311 111246788888888887776 99999999999
Q ss_pred EEEEeeeccc-----------------------ccccCCceEEEEEeecC------------------------------
Q 019405 136 SMRSIEVTKV-----------------------SAESSCSTVKSWNVCAS------------------------------ 162 (341)
Q Consensus 136 ~i~~~~~~~~-----------------------~~~~~~~~v~~~~~~~~------------------------------ 162 (341)
.-|+...... .+.+.|.++++......
T Consensus 345 ~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~ 424 (603)
T KOG0318|consen 345 NSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVAC 424 (603)
T ss_pred EEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEe
Confidence 9999765422 02233444444432110
Q ss_pred -------------------CceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEe
Q 019405 163 -------------------GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS 223 (341)
Q Consensus 163 -------------------~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 223 (341)
-...+++++|+++.++.|+.|+.|++|.+.......+... ..|...|++++|
T Consensus 425 ~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~-------~~h~a~iT~vay-- 495 (603)
T KOG0318|consen 425 ISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKL-------LEHRAAITDVAY-- 495 (603)
T ss_pred cCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeee-------ecccCCceEEEE--
Confidence 1245779999999999999999999999986554332221 124577999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCc
Q 019405 224 IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGS 303 (341)
Q Consensus 224 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~ 303 (341)
+|++.+|+++...+.+.+||+.+.+.....+..|...|.+++|+|+..++|+|+.|..|.||++......-.+++.|...
T Consensus 496 Spd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~g 575 (603)
T KOG0318|consen 496 SPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGG 575 (603)
T ss_pred CCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccC
Confidence 99999999999999999999998776566677799999999999999999999999999999998765545555545778
Q ss_pred eeEEEecCCCCEEEEEeCCCcEEEEEcC
Q 019405 304 IRSIARHPTLPIIASCGLDSYLRFWDIK 331 (341)
Q Consensus 304 i~~~~~~~~~~~l~s~~~dg~v~iwd~~ 331 (341)
|+.+.|- +...+++.+.|..|++|++.
T Consensus 576 Vn~v~wl-de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 576 VNSVAWL-DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred ceeEEEe-cCceEEeccCcceeEEeccc
Confidence 9999996 55688899999999999874
No 32
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=7.7e-33 Score=215.33 Aligned_cols=269 Identities=12% Similarity=0.094 Sum_probs=232.2
Q ss_pred ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 94 (341)
-.+.+++.|+++++|++..+ ++..++.+|-..+.-+++|.... ||.+++.|+.|+.||++.++.++.+.+
T Consensus 164 ~wf~tgs~DrtikIwDlatg-----~LkltltGhi~~vr~vavS~rHp----YlFs~gedk~VKCwDLe~nkvIR~YhG- 233 (460)
T KOG0285|consen 164 EWFATGSADRTIKIWDLATG-----QLKLTLTGHIETVRGVAVSKRHP----YLFSAGEDKQVKCWDLEYNKVIRHYHG- 233 (460)
T ss_pred eeEEecCCCceeEEEEcccC-----eEEEeecchhheeeeeeecccCc----eEEEecCCCeeEEEechhhhhHHHhcc-
Confidence 45788999999999999987 67778999999999999987665 999999999999999999999999887
Q ss_pred CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC
Q 019405 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (341)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~ 174 (341)
|-..+.|+...+..+ .+++++.|.++++||++... .|.+.. .|..+|..+.+.|-.
T Consensus 234 -------HlS~V~~L~lhPTld--------vl~t~grDst~RvWDiRtr~--------~V~~l~-GH~~~V~~V~~~~~d 289 (460)
T KOG0285|consen 234 -------HLSGVYCLDLHPTLD--------VLVTGGRDSTIRVWDIRTRA--------SVHVLS-GHTNPVASVMCQPTD 289 (460)
T ss_pred -------ccceeEEEeccccce--------eEEecCCcceEEEeeecccc--------eEEEec-CCCCcceeEEeecCC
Confidence 457799999988888 99999999999999997543 455544 377899999999988
Q ss_pred CEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEE
Q 019405 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF 254 (341)
Q Consensus 175 ~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 254 (341)
..+++|+.|++|++||++.++....+..|. ..+.+++. +|....+++++.| .|+-|++..+.. ++.+
T Consensus 290 pqvit~S~D~tvrlWDl~agkt~~tlt~hk---------ksvral~l--hP~e~~fASas~d-nik~w~~p~g~f-~~nl 356 (460)
T KOG0285|consen 290 PQVITGSHDSTVRLWDLRAGKTMITLTHHK---------KSVRALCL--HPKENLFASASPD-NIKQWKLPEGEF-LQNL 356 (460)
T ss_pred CceEEecCCceEEEeeeccCceeEeeeccc---------ceeeEEec--CCchhhhhccCCc-cceeccCCccch-hhcc
Confidence 899999999999999999999888888765 44889999 7889999999877 589999998876 7779
Q ss_pred EecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEe---cc----ccCceeEEEecCCCCEEEEEeCCCcEEE
Q 019405 255 DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI---GK----CSGSIRSIARHPTLPIIASCGLDSYLRF 327 (341)
Q Consensus 255 ~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~---~~----~~~~i~~~~~~~~~~~l~s~~~dg~v~i 327 (341)
.+|+.-|.+++.+.|+ ++++|+..|.+.+||.++|...+..+ .. .+..|++.+|...|..|++|..|.+|++
T Consensus 357 sgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~ 435 (460)
T KOG0285|consen 357 SGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKM 435 (460)
T ss_pred ccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEE
Confidence 9999999999998887 78899999999999999885544331 11 2467999999999999999999999999
Q ss_pred EEcC
Q 019405 328 WDIK 331 (341)
Q Consensus 328 wd~~ 331 (341)
|.-.
T Consensus 436 ~keD 439 (460)
T KOG0285|consen 436 YKED 439 (460)
T ss_pred Eecc
Confidence 9754
No 33
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.4e-32 Score=236.78 Aligned_cols=253 Identities=19% Similarity=0.219 Sum_probs=215.0
Q ss_pred CCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCc--chheeeccCCCCCCCCCCceeeEeeeeccccccccccce
Q 019405 48 PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD--LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT 125 (341)
Q Consensus 48 ~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (341)
+...+.++.|++++. +|++++.|+.+++|+..+.+ .+..+.. |...+..+.|.+... .
T Consensus 158 ~~~sv~~~~fs~~g~----~l~~~~~~~~i~~~~~~~~~~~~~~~l~~--------h~~~v~~~~fs~d~~--------~ 217 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGR----ALAAASSDGLIRIWKLEGIKSNLLRELSG--------HTRGVSDVAFSPDGS--------Y 217 (456)
T ss_pred ccCceEEEEEcCCCC----eEEEccCCCcEEEeecccccchhhccccc--------cccceeeeEECCCCc--------E
Confidence 467888888888777 89999999999999997776 4444433 557788888888777 9
Q ss_pred eEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCC
Q 019405 126 LLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPK 205 (341)
Q Consensus 126 l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~ 205 (341)
+++++.|++++||++... ...++... .|...|++++|+|+++++++|+.|++|++||+++++....+..|.
T Consensus 218 l~s~s~D~tiriwd~~~~-------~~~~~~l~-gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs- 288 (456)
T KOG0266|consen 218 LLSGSDDKTLRIWDLKDD-------GRNLKTLK-GHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHS- 288 (456)
T ss_pred EEEecCCceEEEeeccCC-------CeEEEEec-CCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccC-
Confidence 999999999999998322 12556665 688899999999999999999999999999999999999999876
Q ss_pred CccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCc-eeEEEEecCCC--eEEEEEcCCCceEEEEeCCCCE
Q 019405 206 NSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR-PVMSFDFRETP--IKAVAEEPDSFNIYIGNGSGDL 282 (341)
Q Consensus 206 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~--v~~~~~~~~~~~l~~g~~dg~i 282 (341)
..|++++| ++++++|++++.|+.|++||+.++.. .+..+..+..+ ++++.|+|++.++++++.|+.+
T Consensus 289 --------~~is~~~f--~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~ 358 (456)
T KOG0266|consen 289 --------DGISGLAF--SPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTL 358 (456)
T ss_pred --------CceEEEEE--CCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeE
Confidence 56999999 99999999999999999999998763 24566665555 9999999999999999999999
Q ss_pred EEEECCCCeEEeEEeccccC--ceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 283 ASVDIRTGKLLGCFIGKCSG--SIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 283 ~iwd~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
++||+..+..+..+.+|... .+.+...++.+.++++++.|+.|++||+.++..+..+
T Consensus 359 ~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l 417 (456)
T KOG0266|consen 359 KLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRL 417 (456)
T ss_pred EEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhh
Confidence 99999999999999998444 4555566789999999999999999999987765543
No 34
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=2.9e-32 Score=213.47 Aligned_cols=285 Identities=14% Similarity=0.119 Sum_probs=224.8
Q ss_pred CCCceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchhee
Q 019405 12 CPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAI 91 (341)
Q Consensus 12 ~~~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 91 (341)
..+-.+++++-||.+++|+.... ....+.+|.+++..+++-...... ..|++++.|.++++|.++.+......
T Consensus 113 ~~~~~IltgsYDg~~riWd~~Gk------~~~~~~Ght~~ik~v~~v~~n~~~-~~fvsas~Dqtl~Lw~~~~~~~~~~~ 185 (423)
T KOG0313|consen 113 GASKWILTGSYDGTSRIWDLKGK------SIKTIVGHTGPIKSVAWVIKNSSS-CLFVSASMDQTLRLWKWNVGENKVKA 185 (423)
T ss_pred ccCceEEEeecCCeeEEEecCCc------eEEEEecCCcceeeeEEEecCCcc-ceEEEecCCceEEEEEecCchhhhhH
Confidence 34577999999999999998864 566788999999866644333322 26999999999999999876543322
Q ss_pred eccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccc-----------------cccCCceE
Q 019405 92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS-----------------AESSCSTV 154 (341)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~-----------------~~~~~~~v 154 (341)
... ..+|...+.++...+... .+++++.|..+.||+.+..... .+....++
T Consensus 186 ~~~----~~GHk~~V~sVsv~~sgt--------r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~ 253 (423)
T KOG0313|consen 186 LKV----CRGHKRSVDSVSVDSSGT--------RFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPL 253 (423)
T ss_pred HhH----hcccccceeEEEecCCCC--------eEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCce
Confidence 211 014667787777766666 9999999999999994332210 01111122
Q ss_pred EEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEe
Q 019405 155 KSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT 234 (341)
Q Consensus 155 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 234 (341)
+--..|.++|..+.|++ ...+++++.|.+|+.||++++.....+... ..+.++.+ .|..++|++|+
T Consensus 254 -vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~----------ksl~~i~~--~~~~~Ll~~gs 319 (423)
T KOG0313|consen 254 -VTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTN----------KSLNCISY--SPLSKLLASGS 319 (423)
T ss_pred -EEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecC----------cceeEeec--ccccceeeecC
Confidence 22234678999999987 778999999999999999999888777654 44889999 78999999999
Q ss_pred CCCeEEEEEcCCCC--ceeEEEEecCCCeEEEEEcCCC-ceEEEEeCCCCEEEEECCCCe-EEeEEeccccCceeEEEec
Q 019405 235 NDHQVRLYDTSAQR--RPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGK-LLGCFIGKCSGSIRSIARH 310 (341)
Q Consensus 235 ~d~~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~ 310 (341)
.|..|++||.+++. ...+++.+|+..|.++.|+|.. .+|++|+.|+++++||+++.+ +++.+.+| .+.|.++.|+
T Consensus 320 sdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h-~DKvl~vdW~ 398 (423)
T KOG0313|consen 320 SDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGH-NDKVLSVDWN 398 (423)
T ss_pred CCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccC-CceEEEEecc
Confidence 99999999998753 4567888999999999999966 678899999999999999887 89999998 9999999996
Q ss_pred CCCCEEEEEeCCCcEEEEEcC
Q 019405 311 PTLPIIASCGLDSYLRFWDIK 331 (341)
Q Consensus 311 ~~~~~l~s~~~dg~v~iwd~~ 331 (341)
++..+++|+.|.+|+|+.-.
T Consensus 399 -~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 399 -EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred -CCceEEeccCcceEEEeccc
Confidence 56689999999999998654
No 35
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.8e-33 Score=238.05 Aligned_cols=262 Identities=12% Similarity=0.086 Sum_probs=213.0
Q ss_pred eeeeecCCCCeEEEEEecCc--------------------------cCccceeeeccCCCCCceeEEEeccCCCCCceEE
Q 019405 16 RALTFDSLGLIKVIEARGEH--------------------------GGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLA 69 (341)
Q Consensus 16 ~~~~~~~~g~i~~~~~~~~~--------------------------~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~ 69 (341)
.+.+|-.|-.|++|.+.... ........++-+|.++|+...|+|+.+ +|+
T Consensus 392 mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~r----fLl 467 (707)
T KOG0263|consen 392 MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRR----FLL 467 (707)
T ss_pred hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeeccccc----cee
Confidence 35667788888888877310 000012245678999999999999888 999
Q ss_pred EEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeeccccccc
Q 019405 70 VARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAES 149 (341)
Q Consensus 70 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~ 149 (341)
+++.|++||+|.+.+..++-.+++| ..++..+.+.+.+- ++++++.|++.++|..+...
T Consensus 468 ScSED~svRLWsl~t~s~~V~y~GH--------~~PVwdV~F~P~Gy--------YFatas~D~tArLWs~d~~~----- 526 (707)
T KOG0263|consen 468 SCSEDSSVRLWSLDTWSCLVIYKGH--------LAPVWDVQFAPRGY--------YFATASHDQTARLWSTDHNK----- 526 (707)
T ss_pred eccCCcceeeeecccceeEEEecCC--------CcceeeEEecCCce--------EEEecCCCceeeeeecccCC-----
Confidence 9999999999999998888888874 45666666654444 99999999999999977543
Q ss_pred CCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCE
Q 019405 150 SCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRK 229 (341)
Q Consensus 150 ~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 229 (341)
++|++- .|-..|.|++|+|+.+++++||.|.+|++||+.+|..++.|.+|. .+|.+++| +|+|.+
T Consensus 527 ---PlRifa-ghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~---------~~V~al~~--Sp~Gr~ 591 (707)
T KOG0263|consen 527 ---PLRIFA-GHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHK---------GPVTALAF--SPCGRY 591 (707)
T ss_pred ---chhhhc-ccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCC---------CceEEEEE--cCCCce
Confidence 666665 467899999999999999999999999999999999999998865 67999999 899999
Q ss_pred EEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCe------------------
Q 019405 230 FVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK------------------ 291 (341)
Q Consensus 230 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~------------------ 291 (341)
|++|+.|+.|.+||+.+++. +..+.+|.+.|.++.|+.+|..||+|+.|++|++||+..-.
T Consensus 592 LaSg~ed~~I~iWDl~~~~~-v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~ 670 (707)
T KOG0263|consen 592 LASGDEDGLIKIWDLANGSL-VKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQE 670 (707)
T ss_pred EeecccCCcEEEEEcCCCcc-hhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccccccccccccccccccc
Confidence 99999999999999999775 88999999999999999999999999999999999986321
Q ss_pred ------EEeEEeccccCceeEEEecCCCCEEEEE
Q 019405 292 ------LLGCFIGKCSGSIRSIARHPTLPIIASC 319 (341)
Q Consensus 292 ------~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 319 (341)
++..+... ..+|..+.|....-.|+.|
T Consensus 671 ~~~~~~llgs~~tK-~tpv~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 671 NNASSLLLGSFYTK-NTPVVGLHFTRRNLLLAVG 703 (707)
T ss_pred CCCCcceeeeeeec-CceEEEEEEeccceeEEec
Confidence 33444444 5577777776655444443
No 36
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=5.6e-32 Score=234.50 Aligned_cols=273 Identities=17% Similarity=0.234 Sum_probs=228.6
Q ss_pred eeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeC-CCCcchheeeccC
Q 019405 17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNP-LNGDLRVAISNAG 95 (341)
Q Consensus 17 ~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~-~~~~~~~~~~~~~ 95 (341)
+++++.++.+++|....... .+...+.+|...|..++|+++++ ++++++.|++|+|||+ ..+..++++.+
T Consensus 174 l~~~~~~~~i~~~~~~~~~~---~~~~~l~~h~~~v~~~~fs~d~~----~l~s~s~D~tiriwd~~~~~~~~~~l~g-- 244 (456)
T KOG0266|consen 174 LAAASSDGLIRIWKLEGIKS---NLLRELSGHTRGVSDVAFSPDGS----YLLSGSDDKTLRIWDLKDDGRNLKTLKG-- 244 (456)
T ss_pred EEEccCCCcEEEeecccccc---hhhccccccccceeeeEECCCCc----EEEEecCCceEEEeeccCCCeEEEEecC--
Confidence 66677888889999855411 24556678999999999999888 8999999999999999 55578888887
Q ss_pred CCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCC
Q 019405 96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK 175 (341)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~ 175 (341)
|...+.++.+.+... .+++|+.|++++||++.... .++.+.. |...|.+++|+++++
T Consensus 245 ------H~~~v~~~~f~p~g~--------~i~Sgs~D~tvriWd~~~~~--------~~~~l~~-hs~~is~~~f~~d~~ 301 (456)
T KOG0266|consen 245 ------HSTYVTSVAFSPDGN--------LLVSGSDDGTVRIWDVRTGE--------CVRKLKG-HSDGISGLAFSPDGN 301 (456)
T ss_pred ------CCCceEEEEecCCCC--------EEEEecCCCcEEEEeccCCe--------EEEeeec-cCCceEEEEECCCCC
Confidence 457788888887775 99999999999999997533 6666664 677999999999999
Q ss_pred EEEEeeCCCeEEEEECCCCc--eeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEE
Q 019405 176 FSLFGGKGVEVNVWDLDKCE--KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS 253 (341)
Q Consensus 176 ~l~~~~~d~~v~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 253 (341)
+|++++.|+.|++||+.++. ....+..+... . +++++.| +|++.++++++.|+.+++||++.+.. +..
T Consensus 302 ~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~------~-~~~~~~f--sp~~~~ll~~~~d~~~~~w~l~~~~~-~~~ 371 (456)
T KOG0266|consen 302 LLVSASYDGTIRVWDLETGSKLCLKLLSGAENS------A-PVTSVQF--SPNGKYLLSASLDRTLKLWDLRSGKS-VGT 371 (456)
T ss_pred EEEEcCCCccEEEEECCCCceeeeecccCCCCC------C-ceeEEEE--CCCCcEEEEecCCCeEEEEEccCCcc-eee
Confidence 99999999999999999988 34555544321 1 5899999 89999999999999999999998775 777
Q ss_pred EEecCCC---eEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEe--CCCcEEEE
Q 019405 254 FDFRETP---IKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG--LDSYLRFW 328 (341)
Q Consensus 254 ~~~~~~~---v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~--~dg~v~iw 328 (341)
+.+|... +.+...++.+.++++|+.|+.|++||+.++..+..+.+|....+..+.++|..+++++++ .|+.+++|
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w 451 (456)
T KOG0266|consen 372 YTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLW 451 (456)
T ss_pred ecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEe
Confidence 8887764 334455788999999999999999999999999999887467889999999999999998 78999999
Q ss_pred EcC
Q 019405 329 DIK 331 (341)
Q Consensus 329 d~~ 331 (341)
..+
T Consensus 452 ~~~ 454 (456)
T KOG0266|consen 452 KYD 454 (456)
T ss_pred cCC
Confidence 764
No 37
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.8e-31 Score=225.96 Aligned_cols=275 Identities=14% Similarity=0.145 Sum_probs=229.7
Q ss_pred eeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccC-CeEEEeeCCCCcchheeeccC
Q 019405 17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKN-GLTDILNPLNGDLRVAISNAG 95 (341)
Q Consensus 17 ~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~ 95 (341)
++++-..|...++++.+- .+++.+.-.+.++..++|+..+. +||.|+.. |.+-||++++...+.+.++
T Consensus 280 lvvgFssG~f~LyelP~f-----~lih~LSis~~~I~t~~~N~tGD----WiA~g~~klgQLlVweWqsEsYVlKQQg-- 348 (893)
T KOG0291|consen 280 LVVGFSSGEFGLYELPDF-----NLIHSLSISDQKILTVSFNSTGD----WIAFGCSKLGQLLVWEWQSESYVLKQQG-- 348 (893)
T ss_pred EEEEecCCeeEEEecCCc-----eEEEEeecccceeeEEEecccCC----EEEEcCCccceEEEEEeeccceeeeccc--
Confidence 456667777788888776 67777766777888888776555 99998754 8999999998877766665
Q ss_pred CCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCC
Q 019405 96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK 175 (341)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~ 175 (341)
|-..+.++++.+... .+++|++||.++||+...+- .+..|. .|...|+.+.|+..++
T Consensus 349 ------H~~~i~~l~YSpDgq--------~iaTG~eDgKVKvWn~~Sgf--------C~vTFt-eHts~Vt~v~f~~~g~ 405 (893)
T KOG0291|consen 349 ------HSDRITSLAYSPDGQ--------LIATGAEDGKVKVWNTQSGF--------CFVTFT-EHTSGVTAVQFTARGN 405 (893)
T ss_pred ------cccceeeEEECCCCc--------EEEeccCCCcEEEEeccCce--------EEEEec-cCCCceEEEEEEecCC
Confidence 457788998887777 99999999999999975432 444454 5788999999999999
Q ss_pred EEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCC-eEEEEEcCCCCceeEEE
Q 019405 176 FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH-QVRLYDTSAQRRPVMSF 254 (341)
Q Consensus 176 ~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~ 254 (341)
.+++.+.||+|+.||+...+..+++..+.. ....|++. .|.|.++..|+.|. .|.+|++++++. +-.+
T Consensus 406 ~llssSLDGtVRAwDlkRYrNfRTft~P~p--------~Qfscvav--D~sGelV~AG~~d~F~IfvWS~qTGql-lDiL 474 (893)
T KOG0291|consen 406 VLLSSSLDGTVRAWDLKRYRNFRTFTSPEP--------IQFSCVAV--DPSGELVCAGAQDSFEIFVWSVQTGQL-LDIL 474 (893)
T ss_pred EEEEeecCCeEEeeeecccceeeeecCCCc--------eeeeEEEE--cCCCCEEEeeccceEEEEEEEeecCee-eehh
Confidence 999999999999999999998888887753 44678888 88999999998886 599999999875 8899
Q ss_pred EecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCC-eEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCC
Q 019405 255 DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG-KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR 333 (341)
Q Consensus 255 ~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 333 (341)
.+|++||.+++|+|++..|++++.|.+|++||+-.. ..+.++.. ...+..++|+|+|+.|+.+..||.|.+||++.+
T Consensus 475 sGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i--~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~ 552 (893)
T KOG0291|consen 475 SGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEI--RSDVLAVSFRPDGKELAVATLDGQITFFDIKEA 552 (893)
T ss_pred cCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEee--ccceeEEEEcCCCCeEEEEEecceEEEEEhhhc
Confidence 999999999999999999999999999999998654 33444543 568999999999999999999999999999988
Q ss_pred ceeee
Q 019405 334 QLLSA 338 (341)
Q Consensus 334 ~~~~~ 338 (341)
..+..
T Consensus 553 ~q~~~ 557 (893)
T KOG0291|consen 553 VQVGS 557 (893)
T ss_pred eeecc
Confidence 76644
No 38
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.8e-32 Score=226.37 Aligned_cols=268 Identities=12% Similarity=0.085 Sum_probs=231.5
Q ss_pred eeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccC
Q 019405 16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAG 95 (341)
Q Consensus 16 ~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 95 (341)
.++++--.|.+.+|+..+. .++..+.-.+.+|....|-..-. ++++|+.|..||||+..+++.+..+..
T Consensus 27 w~la~LynG~V~IWnyetq-----tmVksfeV~~~PvRa~kfiaRkn----Wiv~GsDD~~IrVfnynt~ekV~~FeA-- 95 (794)
T KOG0276|consen 27 WILAALYNGDVQIWNYETQ-----TMVKSFEVSEVPVRAAKFIARKN----WIVTGSDDMQIRVFNYNTGEKVKTFEA-- 95 (794)
T ss_pred eEEEeeecCeeEEEecccc-----eeeeeeeecccchhhheeeeccc----eEEEecCCceEEEEecccceeeEEeec--
Confidence 4677888999999999987 67778876777887776665444 999999999999999999999999887
Q ss_pred CCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecC-CC
Q 019405 96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SE 174 (341)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~-~~ 174 (341)
|.+.+.+++..+... .+++++.|-.+++|+.+..= .....|. .|..-|.+++|+| |.
T Consensus 96 ------H~DyIR~iavHPt~P--------~vLtsSDDm~iKlW~we~~w-------a~~qtfe-GH~HyVMqv~fnPkD~ 153 (794)
T KOG0276|consen 96 ------HSDYIRSIAVHPTLP--------YVLTSSDDMTIKLWDWENEW-------ACEQTFE-GHEHYVMQVAFNPKDP 153 (794)
T ss_pred ------cccceeeeeecCCCC--------eEEecCCccEEEEeeccCce-------eeeeEEc-CcceEEEEEEecCCCc
Confidence 568899999988877 99999999999999976432 1344555 3667899999999 56
Q ss_pred CEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEE
Q 019405 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF 254 (341)
Q Consensus 175 ~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 254 (341)
+.+++++.|++|++|.+.+..+..++++|. ..|+|+.|.+.++..+|++|+.|.+|+|||.++..+ ++++
T Consensus 154 ntFaS~sLDrTVKVWslgs~~~nfTl~gHe---------kGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~C-V~TL 223 (794)
T KOG0276|consen 154 NTFASASLDRTVKVWSLGSPHPNFTLEGHE---------KGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSC-VQTL 223 (794)
T ss_pred cceeeeeccccEEEEEcCCCCCceeeeccc---------cCcceEEeccCCCcceEEecCCCceEEEeecchHHH-HHHh
Confidence 899999999999999999988888888865 559999998777888999999999999999999655 9999
Q ss_pred EecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEE
Q 019405 255 DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRF 327 (341)
Q Consensus 255 ~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~i 327 (341)
.+|...|..+.|+|.-.++++|+.||+++||+..+-++..++... ...+++++-.+.++.++.|.+.|.|.+
T Consensus 224 eGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~g-leRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 224 EGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYG-LERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred hcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcC-CceEEEEeecCCCCeEEEeccCCcEEE
Confidence 999999999999999999999999999999999998888887765 789999999998888888887776543
No 39
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=5.2e-31 Score=217.19 Aligned_cols=254 Identities=19% Similarity=0.301 Sum_probs=212.8
Q ss_pred eccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccccccc
Q 019405 44 RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS 123 (341)
Q Consensus 44 ~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (341)
++.+|..++.++++++++. +|++++.||.|++|++.+++....+.. +...+..+.+.+...
T Consensus 4 ~~~~h~~~i~~~~~~~~~~----~l~~~~~~g~i~i~~~~~~~~~~~~~~--------~~~~i~~~~~~~~~~------- 64 (289)
T cd00200 4 TLKGHTGGVTCVAFSPDGK----LLATGSGDGTIKVWDLETGELLRTLKG--------HTGPVRDVAASADGT------- 64 (289)
T ss_pred HhcccCCCEEEEEEcCCCC----EEEEeecCcEEEEEEeeCCCcEEEEec--------CCcceeEEEECCCCC-------
Confidence 5668999999999988755 899999999999999988776555554 335566777766654
Q ss_pred ceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCC
Q 019405 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP 203 (341)
Q Consensus 124 ~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~ 203 (341)
.+++++.+|.+.+|++.... .+..+. .+...+.++.|+++++++++++.++.|.+||+++++....+..+
T Consensus 65 -~l~~~~~~~~i~i~~~~~~~--------~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 134 (289)
T cd00200 65 -YLASGSSDKTIRLWDLETGE--------CVRTLT-GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGH 134 (289)
T ss_pred -EEEEEcCCCeEEEEEcCccc--------ceEEEe-ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccC
Confidence 89999999999999986432 334444 34568999999999889998888999999999988877777643
Q ss_pred CCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEE
Q 019405 204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLA 283 (341)
Q Consensus 204 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~ 283 (341)
. ..+.++.| +|++.++++++.|+.|++||++..+. +..+..|...+.++.|+|+++.+++++.++.|+
T Consensus 135 ~---------~~i~~~~~--~~~~~~l~~~~~~~~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 202 (289)
T cd00200 135 T---------DWVNSVAF--SPDGTFVASSSQDGTIKLWDLRTGKC-VATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIK 202 (289)
T ss_pred C---------CcEEEEEE--cCcCCEEEEEcCCCcEEEEEcccccc-ceeEecCccccceEEECCCcCEEEEecCCCcEE
Confidence 3 56999999 77888888888899999999987654 777888888999999999999999999999999
Q ss_pred EEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 284 SVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 284 iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
+||+++++.+..+..| ...+.+++|+|++.++++++.|+.|++||+.+++.+..+
T Consensus 203 i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~ 257 (289)
T cd00200 203 LWDLSTGKCLGTLRGH-ENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTL 257 (289)
T ss_pred EEECCCCceecchhhc-CCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEc
Confidence 9999999999888777 789999999999889998888999999999988777654
No 40
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=7.2e-31 Score=243.71 Aligned_cols=275 Identities=14% Similarity=0.141 Sum_probs=210.6
Q ss_pred ceeeeecCCCCeEEEEEecCc-cC--ccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchhee
Q 019405 15 LRALTFDSLGLIKVIEARGEH-GG--VPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAI 91 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~-~g--~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 91 (341)
-.+++++.||.|++|+..... .+ .......+. +...+..++|++.. +.+|++++.||+|+|||+.+++.+..+
T Consensus 496 ~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~---~~~las~~~Dg~v~lWd~~~~~~~~~~ 571 (793)
T PLN00181 496 EFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYI---KSQVASSNFEGVVQVWDVARSQLVTEM 571 (793)
T ss_pred CEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCC---CCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 347788999999999975420 01 111122232 34567777776543 347999999999999999988877777
Q ss_pred eccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEec
Q 019405 92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD 171 (341)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~ 171 (341)
.. |.+.+.++.+.+.+.. .|++++.|+.+++|++.... .+..+. ....+.++.|+
T Consensus 572 ~~--------H~~~V~~l~~~p~~~~-------~L~Sgs~Dg~v~iWd~~~~~--------~~~~~~--~~~~v~~v~~~ 626 (793)
T PLN00181 572 KE--------HEKRVWSIDYSSADPT-------LLASGSDDGSVKLWSINQGV--------SIGTIK--TKANICCVQFP 626 (793)
T ss_pred cC--------CCCCEEEEEEcCCCCC-------EEEEEcCCCEEEEEECCCCc--------EEEEEe--cCCCeEEEEEe
Confidence 65 4577889988764432 89999999999999986432 333333 34578899995
Q ss_pred -CCCCEEEEeeCCCeEEEEECCCCc-eeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCC--
Q 019405 172 -ISEKFSLFGGKGVEVNVWDLDKCE-KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ-- 247 (341)
Q Consensus 172 -~~~~~l~~~~~d~~v~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-- 247 (341)
+++.++++|+.|+.|++||+++.+ ....+..| ...|.++.| . ++.+|++++.|++|++||++..
T Consensus 627 ~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h---------~~~V~~v~f--~-~~~~lvs~s~D~~ikiWd~~~~~~ 694 (793)
T PLN00181 627 SESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGH---------SKTVSYVRF--V-DSSTLVSSSTDNTLKLWDLSMSIS 694 (793)
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCCccceEecCC---------CCCEEEEEE--e-CCCEEEEEECCCEEEEEeCCCCcc
Confidence 578999999999999999998754 34444443 356999999 4 6779999999999999999753
Q ss_pred ---CceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEe------------ccccCceeEEEecCC
Q 019405 248 ---RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI------------GKCSGSIRSIARHPT 312 (341)
Q Consensus 248 ---~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~------------~~~~~~i~~~~~~~~ 312 (341)
..++..+.+|...+.+++|+|++.+|++|+.|+.|++|+......+..+. .++...|.+++|+|+
T Consensus 695 ~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~ 774 (793)
T PLN00181 695 GINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQ 774 (793)
T ss_pred ccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCC
Confidence 23578888999999999999999999999999999999987665443221 112457999999999
Q ss_pred CCEEEEEeCCCcEEEEEc
Q 019405 313 LPIIASCGLDSYLRFWDI 330 (341)
Q Consensus 313 ~~~l~s~~~dg~v~iwd~ 330 (341)
+..|++++.||.|+||++
T Consensus 775 ~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 775 SSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCeEEEecCCCcEEEEec
Confidence 999999999999999996
No 41
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=4.7e-31 Score=244.96 Aligned_cols=277 Identities=14% Similarity=0.102 Sum_probs=209.3
Q ss_pred CCCeEEEEEecCccCccce--eeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCC
Q 019405 23 LGLIKVIEARGEHGGVPKV--VERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQ 100 (341)
Q Consensus 23 ~g~i~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 100 (341)
+|..++|+..... .... ...+..|...|.+++|++++. +||+|+.|++|+||+......... ..+.+....
T Consensus 457 ~gl~~~~~~~~~~--~~~~~~~~~~~~~~~~V~~i~fs~dg~----~latgg~D~~I~iwd~~~~~~~~~-~~~~~~~~~ 529 (793)
T PLN00181 457 EGLCKYLSFSKLR--VKADLKQGDLLNSSNLVCAIGFDRDGE----FFATAGVNKKIKIFECESIIKDGR-DIHYPVVEL 529 (793)
T ss_pred hhhhhhhcccceE--EEEeeccccccCCCCcEEEEEECCCCC----EEEEEeCCCEEEEEECCccccccc-ccccceEEe
Confidence 5666777666541 0000 012334788899999987665 899999999999999754211000 000000000
Q ss_pred CCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecC-CCCEEEE
Q 019405 101 PEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLF 179 (341)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~-~~~~l~~ 179 (341)
.+...+.++.|.+.... .+++++.||.+++|++.... .+..+. .|...|.+++|+| ++.+|++
T Consensus 530 ~~~~~v~~l~~~~~~~~-------~las~~~Dg~v~lWd~~~~~--------~~~~~~-~H~~~V~~l~~~p~~~~~L~S 593 (793)
T PLN00181 530 ASRSKLSGICWNSYIKS-------QVASSNFEGVVQVWDVARSQ--------LVTEMK-EHEKRVWSIDYSSADPTLLAS 593 (793)
T ss_pred cccCceeeEEeccCCCC-------EEEEEeCCCeEEEEECCCCe--------EEEEec-CCCCCEEEEEEcCCCCCEEEE
Confidence 12345667777654332 89999999999999986433 344443 4678899999996 7899999
Q ss_pred eeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCC
Q 019405 180 GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRET 259 (341)
Q Consensus 180 ~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 259 (341)
|+.|+.|++||++++..+..+..+ ..+.++.|. ++++.+|++|+.|+.|++||++..+.++..+.+|..
T Consensus 594 gs~Dg~v~iWd~~~~~~~~~~~~~----------~~v~~v~~~-~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~ 662 (793)
T PLN00181 594 GSDDGSVKLWSINQGVSIGTIKTK----------ANICCVQFP-SESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSK 662 (793)
T ss_pred EcCCCEEEEEECCCCcEEEEEecC----------CCeEEEEEe-CCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCC
Confidence 999999999999988877766532 337888885 467899999999999999999986655778888999
Q ss_pred CeEEEEEcCCCceEEEEeCCCCEEEEECCC------CeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCC
Q 019405 260 PIKAVAEEPDSFNIYIGNGSGDLASVDIRT------GKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR 333 (341)
Q Consensus 260 ~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 333 (341)
.|.++.|. ++.+|++++.|+.|++||++. .+++..+.+| ...+..++|+|++.+|++|+.|+.|++|+....
T Consensus 663 ~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh-~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 663 TVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGH-TNVKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred CEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCC-CCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 99999997 677999999999999999974 3577888888 889999999999999999999999999998755
Q ss_pred ce
Q 019405 334 QL 335 (341)
Q Consensus 334 ~~ 335 (341)
..
T Consensus 741 ~~ 742 (793)
T PLN00181 741 MP 742 (793)
T ss_pred Cc
Confidence 43
No 42
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.5e-31 Score=203.48 Aligned_cols=258 Identities=14% Similarity=0.203 Sum_probs=210.9
Q ss_pred ceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCC-CCcchheeeccCCCCCCCCCCceeeEeeeeccccc
Q 019405 40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPL-NGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREE 118 (341)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (341)
.+...+.+|.+.|+...|.|++. +||+|+.|..|.+|++. +.+....+++ |.+.+..+.+.....
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs----~~aSgG~Dr~I~LWnv~gdceN~~~lkg--------HsgAVM~l~~~~d~s-- 103 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGS----CFASGGSDRAIVLWNVYGDCENFWVLKG--------HSGAVMELHGMRDGS-- 103 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCC----eEeecCCcceEEEEeccccccceeeecc--------ccceeEeeeeccCCC--
Confidence 34456778999999999998666 89999999999999964 2233334444 568899999988777
Q ss_pred cccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC-CEEEEeeCCCeEEEEECCCCcee
Q 019405 119 SSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKI 197 (341)
Q Consensus 119 ~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~ 197 (341)
.+++++.|.++..||++.++ .++.+.. |...+..+....-| .++.+++.|+++++||+++...+
T Consensus 104 ------~i~S~gtDk~v~~wD~~tG~--------~~rk~k~-h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~ 168 (338)
T KOG0265|consen 104 ------HILSCGTDKTVRGWDAETGK--------RIRKHKG-HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAI 168 (338)
T ss_pred ------EEEEecCCceEEEEecccce--------eeehhcc-ccceeeecCccccCCeEEEecCCCceEEEEeecccchh
Confidence 99999999999999998665 4555543 45667777754444 56778999999999999988877
Q ss_pred eecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEe
Q 019405 198 WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN 277 (341)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~ 277 (341)
..++.. ..++++.| ...+..+.+|+-|+.|++||++.... ...+.+|.++|+.+..+|+|.++.+-+
T Consensus 169 ~t~~~k----------yqltAv~f--~d~s~qv~sggIdn~ikvWd~r~~d~-~~~lsGh~DtIt~lsls~~gs~llsns 235 (338)
T KOG0265|consen 169 KTFENK----------YQLTAVGF--KDTSDQVISGGIDNDIKVWDLRKNDG-LYTLSGHADTITGLSLSRYGSFLLSNS 235 (338)
T ss_pred hccccc----------eeEEEEEe--cccccceeeccccCceeeeccccCcc-eEEeecccCceeeEEeccCCCcccccc
Confidence 776543 44899999 78899999999999999999998765 899999999999999999999999999
Q ss_pred CCCCEEEEECCCC----eEEeEEeccc---cCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 278 GSGDLASVDIRTG----KLLGCFIGKC---SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 278 ~dg~i~iwd~~~~----~~~~~~~~~~---~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
.|.++++||++-. +++..+.+|. +......+|+|++..+.+++.|..+++||..+...+..+
T Consensus 236 Md~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lykl 304 (338)
T KOG0265|consen 236 MDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKL 304 (338)
T ss_pred ccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEc
Confidence 9999999999853 4577777761 234567889999999999999999999999887766554
No 43
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=1.6e-31 Score=231.12 Aligned_cols=272 Identities=11% Similarity=0.162 Sum_probs=229.4
Q ss_pred CceeeeecCCCCeEEEEEecCccCccceeee-ccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheee
Q 019405 14 PLRALTFDSLGLIKVIEARGEHGGVPKVVER-WGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS 92 (341)
Q Consensus 14 ~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 92 (341)
...+++++.+.++++|+.... ..+.. +.+|.+.|..+++.... ++|++|+.|.+++|||..+|++...+.
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~-----~~i~~~l~GH~g~V~~l~~~~~~----~~lvsgS~D~t~rvWd~~sg~C~~~l~ 288 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNG-----YLILTRLVGHFGGVWGLAFPSGG----DKLVSGSTDKTERVWDCSTGECTHSLQ 288 (537)
T ss_pred cCeEEecCCCceeEEeecccc-----eEEEeeccCCCCCceeEEEecCC----CEEEEEecCCcEEeEecCCCcEEEEec
Confidence 456788999999999998886 55555 99999999999987633 379999999999999999999999999
Q ss_pred ccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecC
Q 019405 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI 172 (341)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~ 172 (341)
+| ...+.++...+. .+++|+.|.++++|++.... .+.+... |..+|.++..+
T Consensus 289 gh--------~stv~~~~~~~~----------~~~sgs~D~tVkVW~v~n~~--------~l~l~~~-h~~~V~~v~~~- 340 (537)
T KOG0274|consen 289 GH--------TSSVRCLTIDPF----------LLVSGSRDNTVKVWDVTNGA--------CLNLLRG-HTGPVNCVQLD- 340 (537)
T ss_pred CC--------CceEEEEEccCc----------eEeeccCCceEEEEeccCcc--------eEEEecc-ccccEEEEEec-
Confidence 85 344555443221 77888999999999997444 5666665 88999999997
Q ss_pred CCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeE
Q 019405 173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM 252 (341)
Q Consensus 173 ~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 252 (341)
+.++++|+.|++|++||+.+++++..+.+|. .+|.++.+ ... +.+++|+.|++|++||+++..+++.
T Consensus 341 -~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~---------~~V~sl~~--~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~ 407 (537)
T KOG0274|consen 341 -EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHT---------GRVYSLIV--DSE-NRLLSGSLDTTIKVWDLRTKRKCIH 407 (537)
T ss_pred -CCEEEEEecCceEEEEEhhhceeeeeecCCc---------ceEEEEEe--cCc-ceEEeeeeccceEeecCCchhhhhh
Confidence 8899999999999999999999999999865 77999988 333 8999999999999999999724589
Q ss_pred EEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405 253 SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (341)
Q Consensus 253 ~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 332 (341)
.+.+|..-+..+.+ .++.|++++.|+.|++||..++++++.+.+++...|..+++. ...+++++.|+.+++||+++
T Consensus 408 tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~ 483 (537)
T KOG0274|consen 408 TLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRS 483 (537)
T ss_pred hhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEeccc
Confidence 99999888866655 567999999999999999999999999998436888888876 56889999999999999999
Q ss_pred Cceeeee
Q 019405 333 RQLLSAV 339 (341)
Q Consensus 333 ~~~~~~~ 339 (341)
+++.+++
T Consensus 484 ~~~~~~l 490 (537)
T KOG0274|consen 484 GTLIRTL 490 (537)
T ss_pred Cchhhhh
Confidence 9988765
No 44
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-31 Score=197.34 Aligned_cols=265 Identities=13% Similarity=0.117 Sum_probs=221.1
Q ss_pred eeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccC
Q 019405 16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAG 95 (341)
Q Consensus 16 ~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 95 (341)
-+++++.|.++|+|+..+. .++.++.+|...|.-++.+.|.+ .+++++.|..|.+||+.+|+..+.+.+|
T Consensus 31 Y~ltcGsdrtvrLWNp~rg-----~liktYsghG~EVlD~~~s~Dns----kf~s~GgDk~v~vwDV~TGkv~Rr~rgH- 100 (307)
T KOG0316|consen 31 YCLTCGSDRTVRLWNPLRG-----ALIKTYSGHGHEVLDAALSSDNS----KFASCGGDKAVQVWDVNTGKVDRRFRGH- 100 (307)
T ss_pred EEEEcCCCceEEeeccccc-----ceeeeecCCCceeeecccccccc----ccccCCCCceEEEEEcccCeeeeecccc-
Confidence 3678888888899988887 78999999999999999998888 6999999999999999999999999984
Q ss_pred CCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCC
Q 019405 96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK 175 (341)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~ 175 (341)
..++..+.+.+... .+++++.|..+++||..... ..+|.+++. ....|.++.++ +.
T Consensus 101 -------~aqVNtV~fNeesS--------Vv~SgsfD~s~r~wDCRS~s------~ePiQilde-a~D~V~Si~v~--~h 156 (307)
T KOG0316|consen 101 -------LAQVNTVRFNEESS--------VVASGSFDSSVRLWDCRSRS------FEPIQILDE-AKDGVSSIDVA--EH 156 (307)
T ss_pred -------cceeeEEEecCcce--------EEEeccccceeEEEEcccCC------CCccchhhh-hcCceeEEEec--cc
Confidence 57777777766655 99999999999999986543 336777664 34567787775 56
Q ss_pred EEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEE
Q 019405 176 FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD 255 (341)
Q Consensus 176 ~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 255 (341)
.|++|+.||+++.||++.|+.....-.+ +|+++.| +++++..+.++.|+++++.|-.+++. ++.++
T Consensus 157 eIvaGS~DGtvRtydiR~G~l~sDy~g~-----------pit~vs~--s~d~nc~La~~l~stlrLlDk~tGkl-L~sYk 222 (307)
T KOG0316|consen 157 EIVAGSVDGTVRTYDIRKGTLSSDYFGH-----------PITSVSF--SKDGNCSLASSLDSTLRLLDKETGKL-LKSYK 222 (307)
T ss_pred EEEeeccCCcEEEEEeecceeehhhcCC-----------cceeEEe--cCCCCEEEEeeccceeeecccchhHH-HHHhc
Confidence 8999999999999999998877655553 4999999 99999999999999999999999875 88888
Q ss_pred ecCCCeE--EEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCc-eeEEEecCCCCEEEEEeCCCcEEEEEc
Q 019405 256 FRETPIK--AVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGS-IRSIARHPTLPIIASCGLDSYLRFWDI 330 (341)
Q Consensus 256 ~~~~~v~--~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~s~~~dg~v~iwd~ 330 (341)
+|...-. .++++.....+++|+.||.|++||+.+...+..+..+ ... |.++.++|.-..|+++. ++.+..|--
T Consensus 223 Ghkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~-~~v~v~dl~~hp~~~~f~~A~-~~~~~~~~~ 298 (307)
T KOG0316|consen 223 GHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVV-STVIVTDLSCHPTMDDFITAT-GHGDLFWYQ 298 (307)
T ss_pred ccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccC-CceeEEeeecccCccceeEec-CCceeceee
Confidence 8865433 4566777789999999999999999999999999887 555 89999999988777774 345566643
No 45
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4e-31 Score=223.71 Aligned_cols=271 Identities=14% Similarity=0.137 Sum_probs=228.9
Q ss_pred CCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCC
Q 019405 22 SLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQP 101 (341)
Q Consensus 22 ~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 101 (341)
..+.+++|+.... +.+.+++. .-+.+..|.+.+. ++++|..+|.+.+||+.+...+.+++.
T Consensus 392 a~~SikiWn~~t~-----kciRTi~~--~y~l~~~Fvpgd~----~Iv~G~k~Gel~vfdlaS~~l~Eti~A-------- 452 (888)
T KOG0306|consen 392 AGESIKIWNRDTL-----KCIRTITC--GYILASKFVPGDR----YIVLGTKNGELQVFDLASASLVETIRA-------- 452 (888)
T ss_pred CCCcEEEEEccCc-----ceeEEecc--ccEEEEEecCCCc----eEEEeccCCceEEEEeehhhhhhhhhc--------
Confidence 3467799998876 66667733 3555556766666 899999999999999999888888876
Q ss_pred CCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEE---EeecCCceEEEEecCCCCEEE
Q 019405 102 EDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSW---NVCASGTIAFSKVDISEKFSL 178 (341)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~---~~~~~~~i~~~~~~~~~~~l~ 178 (341)
|++.+-.+...+.+. .+++++.|.++++|+........+.....+.+- .+.-...|.|++++||+++|+
T Consensus 453 HdgaIWsi~~~pD~~--------g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~La 524 (888)
T KOG0306|consen 453 HDGAIWSISLSPDNK--------GFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLA 524 (888)
T ss_pred cccceeeeeecCCCC--------ceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEE
Confidence 567788888888777 899999999999999765543222222222211 111246899999999999999
Q ss_pred EeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecC
Q 019405 179 FGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE 258 (341)
Q Consensus 179 ~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 258 (341)
++-.|++|++|-+++.+....+.+|. -+|.|+.. +|++++++||+.|.+|++|-+.-+.+ -+++.+|.
T Consensus 525 VsLLdnTVkVyflDtlKFflsLYGHk---------LPV~smDI--S~DSklivTgSADKnVKiWGLdFGDC-HKS~fAHd 592 (888)
T KOG0306|consen 525 VSLLDNTVKVYFLDTLKFFLSLYGHK---------LPVLSMDI--SPDSKLIVTGSADKNVKIWGLDFGDC-HKSFFAHD 592 (888)
T ss_pred EEeccCeEEEEEecceeeeeeecccc---------cceeEEec--cCCcCeEEeccCCCceEEeccccchh-hhhhhccc
Confidence 99999999999999999988888876 56999999 99999999999999999999998776 78888999
Q ss_pred CCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405 259 TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (341)
Q Consensus 259 ~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 332 (341)
+.|.++.|-|....+++++.|+.|+-||-...+.++.+.+| ...|++++.+|+|.+++++|.|.+||+|....
T Consensus 593 DSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H-~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 593 DSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGH-HSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred CceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccc-hheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 99999999999999999999999999999999999999999 78999999999999999999999999998754
No 46
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1e-30 Score=196.25 Aligned_cols=270 Identities=14% Similarity=0.128 Sum_probs=212.8
Q ss_pred eeeeecCCCCeEEEEEecCccCccceeeecc-CCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCC--cchheee
Q 019405 16 RALTFDSLGLIKVIEARGEHGGVPKVVERWG-DPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG--DLRVAIS 92 (341)
Q Consensus 16 ~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~ 92 (341)
-+.+|+.|..|++|+.... ..+.+...+. +|...|..+|++|.++ +|++|+.|.++.||.-..+ +++.+++
T Consensus 29 ilAscg~Dk~vriw~~~~~--~s~~ck~vld~~hkrsVRsvAwsp~g~----~La~aSFD~t~~Iw~k~~~efecv~~lE 102 (312)
T KOG0645|consen 29 ILASCGTDKAVRIWSTSSG--DSWTCKTVLDDGHKRSVRSVAWSPHGR----YLASASFDATVVIWKKEDGEFECVATLE 102 (312)
T ss_pred EEEeecCCceEEEEecCCC--CcEEEEEeccccchheeeeeeecCCCc----EEEEeeccceEEEeecCCCceeEEeeee
Confidence 4778999999999998863 2244444453 4999999999887766 9999999999999987654 4566666
Q ss_pred ccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecC
Q 019405 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI 172 (341)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~ 172 (341)
+ |+..+-|++|..... +|++++.|..+.||.+.... +...+-+.+ .|...|..+.|+|
T Consensus 103 G--------HEnEVK~Vaws~sG~--------~LATCSRDKSVWiWe~dedd-----Efec~aVL~-~HtqDVK~V~WHP 160 (312)
T KOG0645|consen 103 G--------HENEVKCVAWSASGN--------YLATCSRDKSVWIWEIDEDD-----EFECIAVLQ-EHTQDVKHVIWHP 160 (312)
T ss_pred c--------cccceeEEEEcCCCC--------EEEEeeCCCeEEEEEecCCC-----cEEEEeeec-cccccccEEEEcC
Confidence 6 668888998887777 99999999999999987433 222344444 4778999999999
Q ss_pred CCCEEEEeeCCCeEEEEECCC---CceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCc
Q 019405 173 SEKFSLFGGKGVEVNVWDLDK---CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR 249 (341)
Q Consensus 173 ~~~~l~~~~~d~~v~i~d~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 249 (341)
...+|++++.|++|++|+-.. -+....+..+. +.|.+++| ++.|..|++++.|++++||-....-
T Consensus 161 t~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~---------~TVW~~~F--~~~G~rl~s~sdD~tv~Iw~~~~~~- 228 (312)
T KOG0645|consen 161 TEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHE---------NTVWSLAF--DNIGSRLVSCSDDGTVSIWRLYTDL- 228 (312)
T ss_pred CcceeEEeccCCeEEEEeecCCCCeeEEEEecCcc---------ceEEEEEe--cCCCceEEEecCCcceEeeeeccCc-
Confidence 999999999999999998762 34566777654 45999999 8899999999999999999866421
Q ss_pred eeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCC------eEEeEEeccccCceeEEEecCC-CCEEEEEeCC
Q 019405 250 PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG------KLLGCFIGKCSGSIRSIARHPT-LPIIASCGLD 322 (341)
Q Consensus 250 ~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~------~~~~~~~~~~~~~i~~~~~~~~-~~~l~s~~~d 322 (341)
. ..|..++..+.|. ...|++++.|+.|++|--... +++......|...|++++|+|. ..+|++++.|
T Consensus 229 --~--~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DD 302 (312)
T KOG0645|consen 229 --S--GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDD 302 (312)
T ss_pred --c--hhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCC
Confidence 1 2267789999998 448999999999999965532 2233233334889999999995 6799999999
Q ss_pred CcEEEEEcC
Q 019405 323 SYLRFWDIK 331 (341)
Q Consensus 323 g~v~iwd~~ 331 (341)
|.|++|.+.
T Consensus 303 G~v~~W~l~ 311 (312)
T KOG0645|consen 303 GIVNFWELE 311 (312)
T ss_pred ceEEEEEec
Confidence 999999875
No 47
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-31 Score=198.88 Aligned_cols=267 Identities=13% Similarity=0.154 Sum_probs=211.0
Q ss_pred CCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCC-CcchheeeccCCCCCCC
Q 019405 23 LGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN-GDLRVAISNAGDSGAQP 101 (341)
Q Consensus 23 ~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~ 101 (341)
.|.+-+.++.+. .|+. .+..| .-+....-+++|.... +.+++++.||+++|||... ..++..++.
T Consensus 37 ~G~L~ile~~~~-~gi~-e~~s~-d~~D~LfdV~Wse~~e---~~~~~a~GDGSLrl~d~~~~s~Pi~~~kE-------- 102 (311)
T KOG0277|consen 37 NGRLFILEVTDP-KGIQ-ECQSY-DTEDGLFDVAWSENHE---NQVIAASGDGSLRLFDLTMPSKPIHKFKE-------- 102 (311)
T ss_pred CceEEEEecCCC-CCeE-EEEee-ecccceeEeeecCCCc---ceEEEEecCceEEEeccCCCCcchhHHHh--------
Confidence 456666666543 3443 33445 3566778888887665 3588999999999999643 345666665
Q ss_pred CCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecC-CCCEEEEe
Q 019405 102 EDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFG 180 (341)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~-~~~~l~~~ 180 (341)
|..++.++.|...... .+++++-|+++++|+..... .++.+.- |...|...+|+| ..+.++++
T Consensus 103 H~~EV~Svdwn~~~r~-------~~ltsSWD~TiKLW~~~r~~--------Sv~Tf~g-h~~~Iy~a~~sp~~~nlfas~ 166 (311)
T KOG0277|consen 103 HKREVYSVDWNTVRRR-------IFLTSSWDGTIKLWDPNRPN--------SVQTFNG-HNSCIYQAAFSPHIPNLFASA 166 (311)
T ss_pred hhhheEEeccccccce-------eEEeeccCCceEeecCCCCc--------ceEeecC-CccEEEEEecCCCCCCeEEEc
Confidence 4577888888766553 78888999999999976544 6667664 778999999999 56899999
Q ss_pred eCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCC
Q 019405 181 GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETP 260 (341)
Q Consensus 181 ~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 260 (341)
+.|+++++||++..-....++.|. ..+.++.|. ..+.+.|++|+.|+.|+.||++..+.|+..+.+|.-.
T Consensus 167 Sgd~~l~lwdvr~~gk~~~i~ah~---------~Eil~cdw~-ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~A 236 (311)
T KOG0277|consen 167 SGDGTLRLWDVRSPGKFMSIEAHN---------SEILCCDWS-KYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLA 236 (311)
T ss_pred cCCceEEEEEecCCCceeEEEecc---------ceeEeeccc-ccCCcEEEecCCCceEEEEehhhccccceeecCCceE
Confidence 999999999998644434455543 458999996 5678899999999999999999999999999999999
Q ss_pred eEEEEEcCCC-ceEEEEeCCCCEEEEECCCCe-EEeEEeccccCceeEEEecC-CCCEEEEEeCCCcEEEEEc
Q 019405 261 IKAVAEEPDS-FNIYIGNGSGDLASVDIRTGK-LLGCFIGKCSGSIRSIARHP-TLPIIASCGLDSYLRFWDI 330 (341)
Q Consensus 261 v~~~~~~~~~-~~l~~g~~dg~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~dg~v~iwd~ 330 (341)
|+.++|||.. ..|+++++|-+++|||...+. .+.+.. ||..-+..+.|++ +..++|+++.|+.++||+.
T Consensus 237 VRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~-~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 237 VRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVD-HHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred EEEEecCcchhhHhhhccccceEEecccccchhhhhhhh-ccceEEeccccccccCceeeecccccceeeecc
Confidence 9999999965 688999999999999998554 344444 4588999999998 4559999999999999985
No 48
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=3e-33 Score=217.05 Aligned_cols=233 Identities=13% Similarity=0.218 Sum_probs=195.3
Q ss_pred CCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeE
Q 019405 48 PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL 127 (341)
Q Consensus 48 ~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 127 (341)
....|+|+.+- .+.+++|..|++|+|||..+..++..+.+ |.+.+.|+.+-+. .++
T Consensus 196 ~skgVYClQYD------D~kiVSGlrDnTikiWD~n~~~c~~~L~G--------HtGSVLCLqyd~r----------vii 251 (499)
T KOG0281|consen 196 NSKGVYCLQYD------DEKIVSGLRDNTIKIWDKNSLECLKILTG--------HTGSVLCLQYDER----------VIV 251 (499)
T ss_pred cCCceEEEEec------chhhhcccccCceEEeccccHHHHHhhhc--------CCCcEEeeeccce----------EEE
Confidence 44567766642 23599999999999999999999988887 4588999887443 899
Q ss_pred EEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCce---eeecCCCC
Q 019405 128 TCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK---IWTAKPPP 204 (341)
Q Consensus 128 ~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~---~~~~~~~~ 204 (341)
+|+.|.++++||++... .++.+ ..|...|..+.|+ ..++++++.|.++.+||+..... .+.+.+
T Consensus 252 sGSSDsTvrvWDv~tge--------~l~tl-ihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvG-- 318 (499)
T KOG0281|consen 252 SGSSDSTVRVWDVNTGE--------PLNTL-IHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVG-- 318 (499)
T ss_pred ecCCCceEEEEeccCCc--------hhhHH-hhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhh--
Confidence 99999999999998665 33333 2466788899986 57999999999999999976432 223334
Q ss_pred CCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEE
Q 019405 205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLAS 284 (341)
Q Consensus 205 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~i 284 (341)
|...|+.+.| +.+++++++.|++|++|++.+.+. ++++.+|...|-|+.+ .++++++|+.|.+|++
T Consensus 319 -------HrAaVNvVdf----d~kyIVsASgDRTikvW~~st~ef-vRtl~gHkRGIAClQY--r~rlvVSGSSDntIRl 384 (499)
T KOG0281|consen 319 -------HRAAVNVVDF----DDKYIVSASGDRTIKVWSTSTCEF-VRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRL 384 (499)
T ss_pred -------hhhheeeecc----ccceEEEecCCceEEEEeccceee-ehhhhcccccceehhc--cCeEEEecCCCceEEE
Confidence 3466899988 677999999999999999999876 9999999999998887 6889999999999999
Q ss_pred EECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCc
Q 019405 285 VDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ 334 (341)
Q Consensus 285 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 334 (341)
||+..|++++.+++| +.-|.++.| +.+.+++|+.||+|++||+.++.
T Consensus 385 wdi~~G~cLRvLeGH-EeLvRciRF--d~krIVSGaYDGkikvWdl~aal 431 (499)
T KOG0281|consen 385 WDIECGACLRVLEGH-EELVRCIRF--DNKRIVSGAYDGKIKVWDLQAAL 431 (499)
T ss_pred EeccccHHHHHHhch-HHhhhheee--cCceeeeccccceEEEEeccccc
Confidence 999999999999999 999999999 56789999999999999998764
No 49
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=2.7e-30 Score=193.69 Aligned_cols=248 Identities=19% Similarity=0.252 Sum_probs=209.8
Q ss_pred eccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccccccc
Q 019405 44 RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS 123 (341)
Q Consensus 44 ~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (341)
.+.+|+++++-+.++.++. +|.+++.|.+..||-..+|+.+.++.+| .+.+-|+..-....
T Consensus 5 ~l~GHERplTqiKyN~eGD----LlFscaKD~~~~vw~s~nGerlGty~GH--------tGavW~~Did~~s~------- 65 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGD----LLFSCAKDSTPTVWYSLNGERLGTYDGH--------TGAVWCCDIDWDSK------- 65 (327)
T ss_pred ccccCccccceEEecCCCc----EEEEecCCCCceEEEecCCceeeeecCC--------CceEEEEEecCCcc-------
Confidence 3668999999999887776 9999999999999999999999999985 47787777765555
Q ss_pred ceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeC-----CCeEEEEECCC-----
Q 019405 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK-----GVEVNVWDLDK----- 193 (341)
Q Consensus 124 ~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----d~~v~i~d~~~----- 193 (341)
.+++++.|.++++||+..++ .+..|. .+.+|..+.|+++|++++.+.. .+.|.++|++.
T Consensus 66 -~liTGSAD~t~kLWDv~tGk--------~la~~k--~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~ 134 (327)
T KOG0643|consen 66 -HLITGSADQTAKLWDVETGK--------QLATWK--TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDI 134 (327)
T ss_pred -eeeeccccceeEEEEcCCCc--------EEEEee--cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhh
Confidence 99999999999999998766 566666 4678999999999999887643 46799999983
Q ss_pred --CceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCc
Q 019405 194 --CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSF 271 (341)
Q Consensus 194 --~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 271 (341)
.++...+..+. ..++.+-| .|-+..|++|..||.|.+||.++++..+...+.|...|+.++++|+..
T Consensus 135 ~s~ep~~kI~t~~---------skit~a~W--g~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T 203 (327)
T KOG0643|consen 135 DSEEPYLKIPTPD---------SKITSALW--GPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRT 203 (327)
T ss_pred cccCceEEecCCc---------cceeeeee--cccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcc
Confidence 34455555543 45888899 899999999999999999999998877888888999999999999999
Q ss_pred eEEEEeCCCCEEEEECCCCeEEeEE-------------------------------------------------------
Q 019405 272 NIYIGNGSGDLASVDIRTGKLLGCF------------------------------------------------------- 296 (341)
Q Consensus 272 ~l~~g~~dg~i~iwd~~~~~~~~~~------------------------------------------------------- 296 (341)
++++++.|.+-++||.++.+.+.++
T Consensus 204 ~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrv 283 (327)
T KOG0643|consen 204 YFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRV 283 (327)
T ss_pred eEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccc
Confidence 9999999999999998765444332
Q ss_pred eccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCC
Q 019405 297 IGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR 333 (341)
Q Consensus 297 ~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 333 (341)
++| -++|++++|||+|+..++|+.||.||+......
T Consensus 284 kGH-FGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 284 KGH-FGPINSVAFHPDGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred ccc-ccCcceeEECCCCcccccCCCCceEEEEEeccc
Confidence 344 789999999999999999999999999877653
No 50
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=3.1e-32 Score=219.52 Aligned_cols=258 Identities=14% Similarity=0.195 Sum_probs=210.9
Q ss_pred ceeeeccCCCCCceeEEEec-cCCCCCceEEEEccCCeEEEeeCCC-CcchheeeccCCCCCCCCCCceeeEeeeecccc
Q 019405 40 KVVERWGDPHSSNCVLAASI-DDSQNDPLLAVARKNGLTDILNPLN-GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQRE 117 (341)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~s~-~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (341)
+++..|.+|...|.++.|.+ ..+ +|++++.|+.|+||++.. +++++++.+| ..++..+.|.+...
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~h----LlLS~gmD~~vklW~vy~~~~~lrtf~gH--------~k~Vrd~~~s~~g~- 271 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGH----LLLSGGMDGLVKLWNVYDDRRCLRTFKGH--------RKPVRDASFNNCGT- 271 (503)
T ss_pred hheeeccCCccccchhhhccceee----EEEecCCCceEEEEEEecCcceehhhhcc--------hhhhhhhhccccCC-
Confidence 45678999999999999887 555 899999999999999876 8899999885 46677777766666
Q ss_pred ccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC-CEEEEeeCCCeEEEEECCCCce
Q 019405 118 ESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEK 196 (341)
Q Consensus 118 ~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~ 196 (341)
.+++++.|+.+++||++.+. .+.. ...+..+.|+.|+|++ +.+++|+.|+.|+.||+++++.
T Consensus 272 -------~fLS~sfD~~lKlwDtETG~--------~~~~--f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv 334 (503)
T KOG0282|consen 272 -------SFLSASFDRFLKLWDTETGQ--------VLSR--FHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV 334 (503)
T ss_pred -------eeeeeecceeeeeeccccce--------EEEE--EecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHH
Confidence 99999999999999997655 2333 3456788999999998 8899999999999999999998
Q ss_pred eeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeE-EEEecCCCeEEEEEcCCCceEEE
Q 019405 197 IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM-SFDFRETPIKAVAEEPDSFNIYI 275 (341)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~ 275 (341)
++++..+- +.|..+.| -+++.++++.+.|++++||+.+..-. ++ ....+.....++..+|++.++++
T Consensus 335 vqeYd~hL---------g~i~~i~F--~~~g~rFissSDdks~riWe~~~~v~-ik~i~~~~~hsmP~~~~~P~~~~~~a 402 (503)
T KOG0282|consen 335 VQEYDRHL---------GAILDITF--VDEGRRFISSSDDKSVRIWENRIPVP-IKNIADPEMHTMPCLTLHPNGKWFAA 402 (503)
T ss_pred HHHHHhhh---------hheeeeEE--ccCCceEeeeccCccEEEEEcCCCcc-chhhcchhhccCcceecCCCCCeehh
Confidence 88877654 66999999 68999999999999999999987542 32 22223345678999999999999
Q ss_pred EeCCCCEEEEECCCC---eEEeEEeccc-cCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 276 GNGSGDLASVDIRTG---KLLGCFIGKC-SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 276 g~~dg~i~iwd~~~~---~~~~~~~~~~-~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
-+.|+.|.+|.+... .....|.+|. .+--..+.|||||.+|++|+.||.+.+||.++-+++..+
T Consensus 403 Qs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~l 470 (503)
T KOG0282|consen 403 QSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKL 470 (503)
T ss_pred hccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcc
Confidence 999999999987543 2234566662 234556899999999999999999999999987766543
No 51
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-29 Score=192.97 Aligned_cols=258 Identities=16% Similarity=0.201 Sum_probs=205.0
Q ss_pred ceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccc
Q 019405 40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES 119 (341)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (341)
++...|++....+.++.|+.++. +|++++.|.+++|||..+++.++++.... -.+-...+.....
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~----~litss~dDsl~LYd~~~g~~~~ti~skk--------yG~~~~~Fth~~~--- 69 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGL----LLITSSEDDSLRLYDSLSGKQVKTINSKK--------YGVDLACFTHHSN--- 69 (311)
T ss_pred ccccccccCCCceeEEEecCCCC----EEEEecCCCeEEEEEcCCCceeeEeeccc--------ccccEEEEecCCc---
Confidence 34455767778888888887776 89999999999999999999999887631 1222333333333
Q ss_pred ccccceeEEEcc--cceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCcee
Q 019405 120 SSRSRTLLTCTT--KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI 197 (341)
Q Consensus 120 ~~~~~~l~~~~~--~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~ 197 (341)
.++.++. |.+|+..++...+ .+|.|. .|...|..++.+|-+..+++++.|++|++||++..++.
T Consensus 70 -----~~i~sStk~d~tIryLsl~dNk--------ylRYF~-GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cq 135 (311)
T KOG1446|consen 70 -----TVIHSSTKEDDTIRYLSLHDNK--------YLRYFP-GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQ 135 (311)
T ss_pred -----eEEEccCCCCCceEEEEeecCc--------eEEEcC-CCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCc
Confidence 5666665 7788888886444 677776 57899999999999999999999999999999976655
Q ss_pred eecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCC-CceeEEEEec---CCCeEEEEEcCCCceE
Q 019405 198 WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ-RRPVMSFDFR---ETPIKAVAEEPDSFNI 273 (341)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~---~~~v~~~~~~~~~~~l 273 (341)
..+.... -..++| +|+|-++|++.....|++||++.. +.|..++... ....+.+.|||+|++|
T Consensus 136 g~l~~~~-----------~pi~Af--Dp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~i 202 (311)
T KOG1446|consen 136 GLLNLSG-----------RPIAAF--DPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSI 202 (311)
T ss_pred eEEecCC-----------CcceeE--CCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEE
Confidence 4444322 234688 999999999988889999999975 5566666544 5678999999999999
Q ss_pred EEEeCCCCEEEEECCCCeEEeEEeccccCc--eeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 274 YIGNGSGDLASVDIRTGKLLGCFIGKCSGS--IRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 274 ~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
+.+...+.+++.|.-+|..+.++..+.... -....|+||++++++|+.||+|.+|++++|+.+..+
T Consensus 203 LlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~ 270 (311)
T KOG1446|consen 203 LLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVL 270 (311)
T ss_pred EEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEe
Confidence 999999999999999999999988762211 246789999999999999999999999999988764
No 52
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.5e-30 Score=218.95 Aligned_cols=292 Identities=16% Similarity=0.184 Sum_probs=233.8
Q ss_pred ecCCCCCceeeeecCCCCeEEEEEecCccCc-cce----eeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeC
Q 019405 8 ECPGCPPLRALTFDSLGLIKVIEARGEHGGV-PKV----VERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNP 82 (341)
Q Consensus 8 ~~~~~~~~~~~~~~~~g~i~~~~~~~~~~g~-~~~----~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~ 82 (341)
++++.+ ..++. -.+..+..+.+... .+. ++. ...+++|...|..+++|.+.. .+++| ..+.|+||+.
T Consensus 330 ~~~~~~-~~lv~-l~nNtv~~ysl~~s-~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~----~~~Sg-a~~SikiWn~ 401 (888)
T KOG0306|consen 330 PSGGTE-NTLVL-LANNTVEWYSLENS-GKTSPEADRTSNIEIGGHRSDVRSLCVSSDSI----LLASG-AGESIKIWNR 401 (888)
T ss_pred ecCCcc-eeEEE-eecCceEEEEeccC-CCCCccccccceeeeccchhheeEEEeecCce----eeeec-CCCcEEEEEc
Confidence 444444 22333 45666766666652 111 111 135678999999999998877 44444 4889999999
Q ss_pred CCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecC
Q 019405 83 LNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCAS 162 (341)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~ 162 (341)
.+.++++++.. +.+.+..+.+.+. .++.|...|.+.++++..... +...+ .|.
T Consensus 402 ~t~kciRTi~~----------~y~l~~~Fvpgd~--------~Iv~G~k~Gel~vfdlaS~~l--------~Eti~-AHd 454 (888)
T KOG0306|consen 402 DTLKCIRTITC----------GYILASKFVPGDR--------YIVLGTKNGELQVFDLASASL--------VETIR-AHD 454 (888)
T ss_pred cCcceeEEecc----------ccEEEEEecCCCc--------eEEEeccCCceEEEEeehhhh--------hhhhh-ccc
Confidence 99999999987 6777888888777 999999999999999976552 22333 578
Q ss_pred CceEEEEecCCCCEEEEeeCCCeEEEEECCC-----CceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCC
Q 019405 163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDK-----CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH 237 (341)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~ 237 (341)
+.|+.++.+||+..+++|+.|.+|++||..- +.....+.-.....+.+ +..|.|+.+ +||+++|+++--|+
T Consensus 455 gaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel--~ddvL~v~~--Spdgk~LaVsLLdn 530 (888)
T KOG0306|consen 455 GAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLEL--EDDVLCVSV--SPDGKLLAVSLLDN 530 (888)
T ss_pred cceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEec--cccEEEEEE--cCCCcEEEEEeccC
Confidence 8999999999999999999999999999752 11111122222222222 356999999 99999999999999
Q ss_pred eEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEE
Q 019405 238 QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIA 317 (341)
Q Consensus 238 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 317 (341)
++++|-+.+.+- ..++.+|.-||.|+..+||++++++|+.|..|+||-++-|.+-..+-+| .+.|.++.|.|....+.
T Consensus 531 TVkVyflDtlKF-flsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAH-dDSvm~V~F~P~~~~FF 608 (888)
T KOG0306|consen 531 TVKVYFLDTLKF-FLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAH-DDSVMSVQFLPKTHLFF 608 (888)
T ss_pred eEEEEEecceee-eeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcc-cCceeEEEEcccceeEE
Confidence 999999998764 7788999999999999999999999999999999999999999999998 99999999999999999
Q ss_pred EEeCCCcEEEEEcCCCceeeeec
Q 019405 318 SCGLDSYLRFWDIKTRQLLSAVC 340 (341)
Q Consensus 318 s~~~dg~v~iwd~~~~~~~~~~~ 340 (341)
++|.|+.|+-||-..-+++++++
T Consensus 609 t~gKD~kvKqWDg~kFe~iq~L~ 631 (888)
T KOG0306|consen 609 TCGKDGKVKQWDGEKFEEIQKLD 631 (888)
T ss_pred EecCcceEEeechhhhhhheeec
Confidence 99999999999999888888875
No 53
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-30 Score=223.21 Aligned_cols=280 Identities=15% Similarity=0.145 Sum_probs=227.6
Q ss_pred ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 94 (341)
-.++++--.|.|.+|+..-. .++.+|.+|+++|..+.|-+ .++++++|+.|-+|+||+..+.+++.++.+|
T Consensus 22 PwILtslHsG~IQlWDYRM~-----tli~rFdeHdGpVRgv~FH~----~qplFVSGGDDykIkVWnYk~rrclftL~GH 92 (1202)
T KOG0292|consen 22 PWILTSLHSGVIQLWDYRMG-----TLIDRFDEHDGPVRGVDFHP----TQPLFVSGGDDYKIKVWNYKTRRCLFTLLGH 92 (1202)
T ss_pred CEEEEeecCceeeeehhhhh-----hHHhhhhccCCccceeeecC----CCCeEEecCCccEEEEEecccceehhhhccc
Confidence 45788889999999998876 78899999999999888654 4559999999999999999999999999884
Q ss_pred CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC
Q 019405 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (341)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~ 174 (341)
.+.+..+.+..... .+++++.|-+|+||+....+ .|.+.. .|...|.|..|+|..
T Consensus 93 --------lDYVRt~~FHheyP--------WIlSASDDQTIrIWNwqsr~--------~iavlt-GHnHYVMcAqFhptE 147 (1202)
T KOG0292|consen 93 --------LDYVRTVFFHHEYP--------WILSASDDQTIRIWNWQSRK--------CIAVLT-GHNHYVMCAQFHPTE 147 (1202)
T ss_pred --------cceeEEeeccCCCc--------eEEEccCCCeEEEEeccCCc--------eEEEEe-cCceEEEeeccCCcc
Confidence 46666666655555 99999999999999987544 444443 467789999999999
Q ss_pred CEEEEeeCCCeEEEEECCCCceeeecCC--------CCC------------CccCccCCeeeeEEEEEecCCCCEEEEEe
Q 019405 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKP--------PPK------------NSLGIFTPTWFTSAAFLSIDDHRKFVAGT 234 (341)
Q Consensus 175 ~~l~~~~~d~~v~i~d~~~~~~~~~~~~--------~~~------------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 234 (341)
..++++|.|.+|++||+...+.....+. ... ...-.+|...|+-++| +|.-.++++|+
T Consensus 148 DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAf--hpTlpliVSG~ 225 (1202)
T KOG0292|consen 148 DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAF--HPTLPLIVSGA 225 (1202)
T ss_pred ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEe--cCCcceEEecC
Confidence 9999999999999999964322111111 000 0122346677999999 78889999999
Q ss_pred CCCeEEEEEcCCCCc-eeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCC
Q 019405 235 NDHQVRLYDTSAQRR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL 313 (341)
Q Consensus 235 ~d~~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~ 313 (341)
.|+.|++|.+...+. .+-+..+|...|.++-|+|...++++.+.|++|++||+...+.+++|+-. .+..+.++-+|..
T Consensus 226 DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrre-ndRFW~laahP~l 304 (1202)
T KOG0292|consen 226 DDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRE-NDRFWILAAHPEL 304 (1202)
T ss_pred CcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeecc-CCeEEEEEecCCc
Confidence 999999999886432 35667889999999999999999999999999999999999999999876 7899999999999
Q ss_pred CEEEEEeCCCcEEEEEcCC
Q 019405 314 PIIASCGLDSYLRFWDIKT 332 (341)
Q Consensus 314 ~~l~s~~~dg~v~iwd~~~ 332 (341)
+++++| .|+-+.+|.++.
T Consensus 305 NLfAAg-HDsGm~VFkleR 322 (1202)
T KOG0292|consen 305 NLFAAG-HDSGMIVFKLER 322 (1202)
T ss_pred ceeeee-cCCceEEEEEcc
Confidence 988877 566677777763
No 54
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.98 E-value=5.9e-30 Score=191.22 Aligned_cols=255 Identities=12% Similarity=0.098 Sum_probs=213.4
Q ss_pred eccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccccccc
Q 019405 44 RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS 123 (341)
Q Consensus 44 ~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (341)
.+++|...+..++|+.++. .|++|+.|+++++|+++..+....... ..|.+.+..++|.+.+..
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~----~lasgs~dktv~v~n~e~~r~~~~~~~------~gh~~svdql~w~~~~~d------ 78 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGT----KLASGSFDKTVSVWNLERDRFRKELVY------RGHTDSVDQLCWDPKHPD------ 78 (313)
T ss_pred HhhhhhhcceEEEEcccCc----eeeecccCCceEEEEecchhhhhhhcc------cCCCcchhhheeCCCCCc------
Confidence 4567888999999998888 899999999999999987755544433 246678888999887765
Q ss_pred ceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCC
Q 019405 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP 203 (341)
Q Consensus 124 ~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~ 203 (341)
.+++++.|.++++|++...+ .+... ...+.=.-+.|+|+|++++.++.|..|.+.|.++.+.....+..
T Consensus 79 -~~atas~dk~ir~wd~r~~k--------~~~~i--~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~ 147 (313)
T KOG1407|consen 79 -LFATASGDKTIRIWDIRSGK--------CTARI--ETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFK 147 (313)
T ss_pred -ceEEecCCceEEEEEeccCc--------EEEEe--eccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhccc
Confidence 89999999999999997655 33322 33444556789999999999999999999999987766544432
Q ss_pred CCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEE
Q 019405 204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLA 283 (341)
Q Consensus 204 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~ 283 (341)
..+..++| +.++++++.....|+|.|......+ |+..++.|.....|+.|+|+|+++|+|+.|..+.
T Consensus 148 ----------~e~ne~~w--~~~nd~Fflt~GlG~v~ILsypsLk-pv~si~AH~snCicI~f~p~GryfA~GsADAlvS 214 (313)
T KOG1407|consen 148 ----------FEVNEISW--NNSNDLFFLTNGLGCVEILSYPSLK-PVQSIKAHPSNCICIEFDPDGRYFATGSADALVS 214 (313)
T ss_pred ----------ceeeeeee--cCCCCEEEEecCCceEEEEeccccc-cccccccCCcceEEEEECCCCceEeeccccceee
Confidence 33677888 5566677766778999999988755 6999999999999999999999999999999999
Q ss_pred EEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 284 SVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 284 iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
+||++..-+++.+..+ .-+|..+.|+.+|++||++|+|..|-|=++++|..+.++
T Consensus 215 LWD~~ELiC~R~isRl-dwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI 269 (313)
T KOG1407|consen 215 LWDVDELICERCISRL-DWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEI 269 (313)
T ss_pred ccChhHhhhheeeccc-cCceEEEEeccCcceeeccCccceEEeEecccCCeEEEe
Confidence 9999998888888887 889999999999999999999999999999999888775
No 55
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=1.5e-31 Score=208.41 Aligned_cols=271 Identities=13% Similarity=0.142 Sum_probs=212.6
Q ss_pred eeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccC
Q 019405 16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAG 95 (341)
Q Consensus 16 ~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 95 (341)
.+.+|+-||.|++|++... ....++..|.+.|.-+++.. . .+++++.|.+|+.|.++ +..+.++.+.
T Consensus 81 ~~aSGs~DG~VkiWnlsqR-----~~~~~f~AH~G~V~Gi~v~~-~-----~~~tvgdDKtvK~wk~~-~~p~~tilg~- 147 (433)
T KOG0268|consen 81 TVASGSCDGEVKIWNLSQR-----ECIRTFKAHEGLVRGICVTQ-T-----SFFTVGDDKTVKQWKID-GPPLHTILGK- 147 (433)
T ss_pred hhhccccCceEEEEehhhh-----hhhheeecccCceeeEEecc-c-----ceEEecCCcceeeeecc-CCcceeeecc-
Confidence 4778999999999999987 56668889999999888776 2 48888899999999985 4555555542
Q ss_pred CCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC-
Q 019405 96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE- 174 (341)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~- 174 (341)
..+..+....... .++++++ .+.|||..... ++..+... -..|.++.|+|..
T Consensus 148 --------s~~~gIdh~~~~~--------~FaTcGe--~i~IWD~~R~~--------Pv~smswG-~Dti~svkfNpvET 200 (433)
T KOG0268|consen 148 --------SVYLGIDHHRKNS--------VFATCGE--QIDIWDEQRDN--------PVSSMSWG-ADSISSVKFNPVET 200 (433)
T ss_pred --------ccccccccccccc--------cccccCc--eeeecccccCC--------ccceeecC-CCceeEEecCCCcc
Confidence 2233333322222 5666553 68899976433 55544432 2468899999965
Q ss_pred CEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEE
Q 019405 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF 254 (341)
Q Consensus 175 ~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 254 (341)
..|++|+.|+.|.+||++++.++..+... -.-+.++| +|+...++++++|..++.||++....|+...
T Consensus 201 sILas~~sDrsIvLyD~R~~~Pl~KVi~~----------mRTN~Isw--nPeafnF~~a~ED~nlY~~DmR~l~~p~~v~ 268 (433)
T KOG0268|consen 201 SILASCASDRSIVLYDLRQASPLKKVILT----------MRTNTICW--NPEAFNFVAANEDHNLYTYDMRNLSRPLNVH 268 (433)
T ss_pred hheeeeccCCceEEEecccCCccceeeee----------ccccceec--Cccccceeeccccccceehhhhhhcccchhh
Confidence 56778889999999999999887765432 22567899 7888889999999999999999988899999
Q ss_pred EecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCc
Q 019405 255 DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ 334 (341)
Q Consensus 255 ~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 334 (341)
.+|.+.|.++.|||.|+-+++|+.|.+|+||..+.+.....+.......|.++.|+.|.+++++||.|+.|++|.....+
T Consensus 269 ~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 269 KDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred cccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence 99999999999999999999999999999999988765544433224579999999999999999999999999987655
Q ss_pred eeee
Q 019405 335 LLSA 338 (341)
Q Consensus 335 ~~~~ 338 (341)
.+..
T Consensus 349 klgv 352 (433)
T KOG0268|consen 349 KLGV 352 (433)
T ss_pred hcCC
Confidence 5443
No 56
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.98 E-value=7.3e-32 Score=207.74 Aligned_cols=248 Identities=17% Similarity=0.253 Sum_probs=213.9
Q ss_pred CCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEE
Q 019405 49 HSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLT 128 (341)
Q Consensus 49 ~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 128 (341)
...+.|..||||+. ||++|+.||-|.+||..+|+..+.++.-....+.-.++++.|+.+..... .+++
T Consensus 213 KSh~EcA~FSPDgq----yLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE--------MlAs 280 (508)
T KOG0275|consen 213 KSHVECARFSPDGQ----YLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE--------MLAS 280 (508)
T ss_pred ccchhheeeCCCCc----eEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH--------Hhhc
Confidence 34455677776666 99999999999999999999888777655555666789999999877766 9999
Q ss_pred EcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCcc
Q 019405 129 CTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSL 208 (341)
Q Consensus 129 ~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~ 208 (341)
|+.||.+++|.+..+. .++.|+-.|...|+|+.|+.|+..+++++.|.++++.-+++|+.+.++.+|.
T Consensus 281 GsqDGkIKvWri~tG~--------ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHs---- 348 (508)
T KOG0275|consen 281 GSQDGKIKVWRIETGQ--------CLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHS---- 348 (508)
T ss_pred cCcCCcEEEEEEecch--------HHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCcc----
Confidence 9999999999998665 7888998899999999999999999999999999999999999999999875
Q ss_pred CccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEE----------------------------------
Q 019405 209 GIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF---------------------------------- 254 (341)
Q Consensus 209 ~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---------------------------------- 254 (341)
..|+...| .++|..+++++.||+|++|+..+.++ +.++
T Consensus 349 -----Syvn~a~f--t~dG~~iisaSsDgtvkvW~~KtteC-~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~im 420 (508)
T KOG0275|consen 349 -----SYVNEATF--TDDGHHIISASSDGTVKVWHGKTTEC-LSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIM 420 (508)
T ss_pred -----ccccceEE--cCCCCeEEEecCCccEEEecCcchhh-hhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEE
Confidence 77999999 89999999999999999999876432 1111
Q ss_pred ----------Ee---cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeC
Q 019405 255 ----------DF---RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGL 321 (341)
Q Consensus 255 ----------~~---~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 321 (341)
.. ..+...+.+.+|.|.++++.+.|+.++.|...+|++..++..| +..+..++-+|..+.||+=+.
T Consensus 421 n~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~Vh-EkdvIGl~HHPHqNllAsYsE 499 (508)
T KOG0275|consen 421 NMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVH-EKDVIGLTHHPHQNLLASYSE 499 (508)
T ss_pred eccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecc-cccccccccCcccchhhhhcc
Confidence 10 1123456678999999999999999999999999999999998 888999999999999999999
Q ss_pred CCcEEEEE
Q 019405 322 DSYLRFWD 329 (341)
Q Consensus 322 dg~v~iwd 329 (341)
||.+++|.
T Consensus 500 DgllKLWk 507 (508)
T KOG0275|consen 500 DGLLKLWK 507 (508)
T ss_pred cchhhhcC
Confidence 99999995
No 57
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.98 E-value=5.9e-30 Score=200.60 Aligned_cols=250 Identities=14% Similarity=0.192 Sum_probs=194.1
Q ss_pred CceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecc
Q 019405 65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK 144 (341)
Q Consensus 65 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~ 144 (341)
++++++|++||.++|||. .|+....+.+| .+++..+.+...+. ..+.|++++.|.++.+|.++...
T Consensus 115 ~~~IltgsYDg~~riWd~-~Gk~~~~~~Gh--------t~~ik~v~~v~~n~-----~~~~fvsas~Dqtl~Lw~~~~~~ 180 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDL-KGKSIKTIVGH--------TGPIKSVAWVIKNS-----SSCLFVSASMDQTLRLWKWNVGE 180 (423)
T ss_pred CceEEEeecCCeeEEEec-CCceEEEEecC--------CcceeeeEEEecCC-----ccceEEEecCCceEEEEEecCch
Confidence 347999999999999998 58888888874 57787777776655 23379999999999999987654
Q ss_pred cccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCC--ceeeecCC--------------CCCCcc
Q 019405 145 VSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC--EKIWTAKP--------------PPKNSL 208 (341)
Q Consensus 145 ~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~--~~~~~~~~--------------~~~~~~ 208 (341)
.. ...+..-. .|...|.+++..+++..+++|+.|..|++|+..+. ..+..... ...-..
T Consensus 181 ~~----~~~~~~~~-GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vt 255 (423)
T KOG0313|consen 181 NK----VKALKVCR-GHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVT 255 (423)
T ss_pred hh----hhHHhHhc-ccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEE
Confidence 32 11111111 67889999999999999999999999999993321 00000000 001112
Q ss_pred CccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECC
Q 019405 209 GIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR 288 (341)
Q Consensus 209 ~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~ 288 (341)
-.+|..+|.++.| ++ ...+++++.|.+|+.||+.++.. ...+. ...++.++.++|..++|++|+.|..|++||.+
T Consensus 256 l~GHt~~Vs~V~w--~d-~~v~yS~SwDHTIk~WDletg~~-~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR 330 (423)
T KOG0313|consen 256 LEGHTEPVSSVVW--SD-ATVIYSVSWDHTIKVWDLETGGL-KSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPR 330 (423)
T ss_pred ecccccceeeEEE--cC-CCceEeecccceEEEEEeecccc-eeeee-cCcceeEeecccccceeeecCCCCceeecCCC
Confidence 3457788999999 44 77899999999999999999775 55555 34689999999999999999999999999999
Q ss_pred CCe---EEeEEeccccCceeEEEecCCCC-EEEEEeCCCcEEEEEcCCCc-eeeee
Q 019405 289 TGK---LLGCFIGKCSGSIRSIARHPTLP-IIASCGLDSYLRFWDIKTRQ-LLSAV 339 (341)
Q Consensus 289 ~~~---~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~-~~~~~ 339 (341)
++. ..++|.+| .+.|.++.|+|... +|++++.|+++++||+++.+ ++..|
T Consensus 331 ~~~gs~v~~s~~gH-~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI 385 (423)
T KOG0313|consen 331 TGDGSVVSQSLIGH-KNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDI 385 (423)
T ss_pred CCCCceeEEeeecc-hhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceee
Confidence 763 46778898 88999999999776 78999999999999999876 55544
No 58
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=1.2e-29 Score=197.98 Aligned_cols=253 Identities=15% Similarity=0.202 Sum_probs=204.7
Q ss_pred eeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccccc
Q 019405 42 VERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSS 121 (341)
Q Consensus 42 ~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (341)
+..|..|..++.+++..|+.. +++||+.|..-.||+..++....++.+ |.+.++++.|.....
T Consensus 57 ~~tF~~H~~svFavsl~P~~~----l~aTGGgDD~AflW~~~~ge~~~eltg--------HKDSVt~~~Fshdgt----- 119 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNN----LVATGGGDDLAFLWDISTGEFAGELTG--------HKDSVTCCSFSHDGT----- 119 (399)
T ss_pred eeehhhcCCceEEEEeCCCCc----eEEecCCCceEEEEEccCCcceeEecC--------CCCceEEEEEccCce-----
Confidence 457889999999888777444 899999999999999999998777776 568899999877777
Q ss_pred ccceeEEEcccceeEEEEeeecccccccCCceEEEEEe-ecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeec
Q 019405 122 RSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV-CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTA 200 (341)
Q Consensus 122 ~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~ 200 (341)
+|++|..+|.+.||.+..... .|.+ .....+.-+.|+|.+..|+.|+.||.+.+|.+.++...+.+
T Consensus 120 ---lLATGdmsG~v~v~~~stg~~----------~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~ 186 (399)
T KOG0296|consen 120 ---LLATGDMSGKVLVFKVSTGGE----------QWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVM 186 (399)
T ss_pred ---EEEecCCCccEEEEEcccCce----------EEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEe
Confidence 999999999999999865441 2222 24567889999999999999999999999999987777777
Q ss_pred CCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEe------------------------
Q 019405 201 KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF------------------------ 256 (341)
Q Consensus 201 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~------------------------ 256 (341)
.+|. .++++=.| .|+|++++++..||+|++||..+++ |+..+..
T Consensus 187 ~Gh~---------~~ct~G~f--~pdGKr~~tgy~dgti~~Wn~ktg~-p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e 254 (399)
T KOG0296|consen 187 SGHN---------SPCTCGEF--IPDGKRILTGYDDGTIIVWNPKTGQ-PLHKITQAEGLELPCISLNLAGSTLTKGNSE 254 (399)
T ss_pred cCCC---------CCcccccc--cCCCceEEEEecCceEEEEecCCCc-eeEEecccccCcCCccccccccceeEeccCC
Confidence 7754 55888889 7899999999999999999999865 3444431
Q ss_pred ---------------------------cCCCeEEEEE---cCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeE
Q 019405 257 ---------------------------RETPIKAVAE---EPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRS 306 (341)
Q Consensus 257 ---------------------------~~~~v~~~~~---~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~ 306 (341)
++..+.++.+ +..-.+.|+|+.||+|.|||+...++.+.+. | ..+|..
T Consensus 255 ~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-h-e~~V~~ 332 (399)
T KOG0296|consen 255 GVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-H-EDGVTK 332 (399)
T ss_pred ccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-C-CCceEE
Confidence 0011122222 2233577899999999999998877776665 3 788999
Q ss_pred EEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 307 IARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 307 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
+.|-+ ..+|++++.||.|+.||.++|+++.++
T Consensus 333 l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y 364 (399)
T KOG0296|consen 333 LKWLN-TDYLLTACANGKVRQWDARTGQLKFTY 364 (399)
T ss_pred EEEcC-cchheeeccCceEEeeeccccceEEEE
Confidence 99998 789999999999999999999998875
No 59
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4e-30 Score=221.44 Aligned_cols=250 Identities=15% Similarity=0.193 Sum_probs=212.9
Q ss_pred CCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeE
Q 019405 48 PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL 127 (341)
Q Consensus 48 ~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 127 (341)
....+..++ .+|..++++++-..|.|++||.+-+.++..+.. |++++.++.+.+... .++
T Consensus 8 kSsRvKgls----FHP~rPwILtslHsG~IQlWDYRM~tli~rFde--------HdGpVRgv~FH~~qp--------lFV 67 (1202)
T KOG0292|consen 8 KSSRVKGLS----FHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDE--------HDGPVRGVDFHPTQP--------LFV 67 (1202)
T ss_pred cccccccee----cCCCCCEEEEeecCceeeeehhhhhhHHhhhhc--------cCCccceeeecCCCC--------eEE
Confidence 344444444 456667999999999999999999999988887 679999999988887 999
Q ss_pred EEcccceeEEEEeeecccccccCCceEEEEE-eecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCC
Q 019405 128 TCTTKGKASMRSIEVTKVSAESSCSTVKSWN-VCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKN 206 (341)
Q Consensus 128 ~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~ 206 (341)
+|+.|-.|++|+..... .++. ..|-..|..+.|++.-.+|+++|.|.+|+||+..+++++..+.+|.
T Consensus 68 SGGDDykIkVWnYk~rr----------clftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHn-- 135 (1202)
T KOG0292|consen 68 SGGDDYKIKVWNYKTRR----------CLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHN-- 135 (1202)
T ss_pred ecCCccEEEEEecccce----------ehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCc--
Confidence 99999999999976433 1222 2455679999999999999999999999999999999999998864
Q ss_pred ccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCc----------------------------eeEEEEecC
Q 019405 207 SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR----------------------------PVMSFDFRE 258 (341)
Q Consensus 207 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----------------------------~~~~~~~~~ 258 (341)
..|.|..| +|...++++++-|.+||+||+...+. ..+.+.+|.
T Consensus 136 -------HYVMcAqF--hptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHD 206 (1202)
T KOG0292|consen 136 -------HYVMCAQF--HPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHD 206 (1202)
T ss_pred -------eEEEeecc--CCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccc
Confidence 78999999 78889999999999999999864110 124567899
Q ss_pred CCeEEEEEcCCCceEEEEeCCCCEEEEECCCCe--EEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCcee
Q 019405 259 TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK--LLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLL 336 (341)
Q Consensus 259 ~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 336 (341)
..|+-++|+|.-.+|++|+.|..|++|....-+ .+.+..+| .+.|.++-|+|...++++.|.|++|++||+...+.+
T Consensus 207 RGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH-~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v 285 (1202)
T KOG0292|consen 207 RGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGH-YNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSV 285 (1202)
T ss_pred cccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcc-cCCcceEEecCccceeEecCCCccEEEEecccccce
Confidence 999999999999999999999999999886443 36677888 899999999999999999999999999999999888
Q ss_pred eee
Q 019405 337 SAV 339 (341)
Q Consensus 337 ~~~ 339 (341)
+++
T Consensus 286 ~tf 288 (1202)
T KOG0292|consen 286 QTF 288 (1202)
T ss_pred eee
Confidence 876
No 60
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.5e-29 Score=208.63 Aligned_cols=264 Identities=16% Similarity=0.157 Sum_probs=213.4
Q ss_pred CCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCC
Q 019405 22 SLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQP 101 (341)
Q Consensus 22 ~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 101 (341)
..-.+.+|+.... ++..-..-+...++++.++.++. +|++|..+|.|.|||..+.+.+..+..+
T Consensus 195 lg~~vylW~~~s~-----~v~~l~~~~~~~vtSv~ws~~G~----~LavG~~~g~v~iwD~~~~k~~~~~~~~------- 258 (484)
T KOG0305|consen 195 LGQSVYLWSASSG-----SVTELCSFGEELVTSVKWSPDGS----HLAVGTSDGTVQIWDVKEQKKTRTLRGS------- 258 (484)
T ss_pred ecceEEEEecCCC-----ceEEeEecCCCceEEEEECCCCC----EEEEeecCCeEEEEehhhccccccccCC-------
Confidence 3334566766665 22222222378899999887777 8999999999999999988888888772
Q ss_pred CCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEee
Q 019405 102 EDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG 181 (341)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~ 181 (341)
|...+-+++|. .. .+.+|+.++.+.++++...... +.. ...|...|..++|++|++++|+|+
T Consensus 259 h~~rvg~laW~--~~--------~lssGsr~~~I~~~dvR~~~~~-------~~~-~~~H~qeVCgLkws~d~~~lASGg 320 (484)
T KOG0305|consen 259 HASRVGSLAWN--SS--------VLSSGSRDGKILNHDVRISQHV-------VST-LQGHRQEVCGLKWSPDGNQLASGG 320 (484)
T ss_pred cCceeEEEecc--Cc--------eEEEecCCCcEEEEEEecchhh-------hhh-hhcccceeeeeEECCCCCeeccCC
Confidence 45777777775 22 8999999999999999866532 121 234788999999999999999999
Q ss_pred CCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEe--CCCeEEEEEcCCCCceeEEEEecCC
Q 019405 182 KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT--NDHQVRLYDTSAQRRPVMSFDFRET 259 (341)
Q Consensus 182 ~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~ 259 (341)
.|+.+.|||....++...+..|. ..|.+++|+| -...+||+|+ .|+.|++||..+++. +..... ..
T Consensus 321 nDN~~~Iwd~~~~~p~~~~~~H~---------aAVKA~awcP-~q~~lLAsGGGs~D~~i~fwn~~~g~~-i~~vdt-gs 388 (484)
T KOG0305|consen 321 NDNVVFIWDGLSPEPKFTFTEHT---------AAVKALAWCP-WQSGLLATGGGSADRCIKFWNTNTGAR-IDSVDT-GS 388 (484)
T ss_pred CccceEeccCCCccccEEEeccc---------eeeeEeeeCC-CccCceEEcCCCcccEEEEEEcCCCcE-eccccc-CC
Confidence 99999999998777777777765 6799999974 3556888854 699999999998775 666553 46
Q ss_pred CeEEEEEcCCCceEEE--EeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405 260 PIKAVAEEPDSFNIYI--GNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (341)
Q Consensus 260 ~v~~~~~~~~~~~l~~--g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 332 (341)
.|.++.|++..+.|++ |..++.|.||+..+.+++..+.+| ...|..++++|||..+++|+.|.++++|++-.
T Consensus 389 QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH-~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 389 QVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGH-TSRVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred ceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCC-cceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 8999999999876665 446788999999999999999999 99999999999999999999999999999865
No 61
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=2.7e-30 Score=191.98 Aligned_cols=270 Identities=16% Similarity=0.189 Sum_probs=217.1
Q ss_pred eeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCC
Q 019405 17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGD 96 (341)
Q Consensus 17 ~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 96 (341)
+++++.||.-- +....+|.| +.+|.+|.+.|-..+...+.. +-|+++.|=+-+|||.-+|..+..+..
T Consensus 32 lisa~kd~~pm---lr~g~tgdw--igtfeghkgavw~~~l~~na~----~aasaaadftakvw~a~tgdelhsf~h--- 99 (334)
T KOG0278|consen 32 LISASKDGKPM---LRNGDTGDW--IGTFEGHKGAVWSATLNKNAT----RAASAAADFTAKVWDAVTGDELHSFEH--- 99 (334)
T ss_pred EEEeccCCCch---hccCCCCCc--EEeeeccCcceeeeecCchhh----hhhhhcccchhhhhhhhhhhhhhhhhh---
Confidence 45556665433 233446755 668999999987666555444 688899999999999999999988876
Q ss_pred CCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCE
Q 019405 97 SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKF 176 (341)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~ 176 (341)
+.|+..+.|..+.+ .|++++.+..++|++++... .+...+. .|.+.|..+.|....+.
T Consensus 100 -------khivk~~af~~ds~-------~lltgg~ekllrvfdln~p~-------App~E~~-ghtg~Ir~v~wc~eD~~ 157 (334)
T KOG0278|consen 100 -------KHIVKAVAFSQDSN-------YLLTGGQEKLLRVFDLNRPK-------APPKEIS-GHTGGIRTVLWCHEDKC 157 (334)
T ss_pred -------hheeeeEEecccch-------hhhccchHHHhhhhhccCCC-------CCchhhc-CCCCcceeEEEeccCce
Confidence 66777777776664 99999999999999987543 2333333 35678889999888889
Q ss_pred EEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEe
Q 019405 177 SLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF 256 (341)
Q Consensus 177 l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 256 (341)
|++.+.|++|++||.+++..+..+... ..|+++.+ +++|.+|.++ ..+.|++||..+... ++.++-
T Consensus 158 iLSSadd~tVRLWD~rTgt~v~sL~~~----------s~VtSlEv--s~dG~ilTia-~gssV~Fwdaksf~~-lKs~k~ 223 (334)
T KOG0278|consen 158 ILSSADDKTVRLWDHRTGTEVQSLEFN----------SPVTSLEV--SQDGRILTIA-YGSSVKFWDAKSFGL-LKSYKM 223 (334)
T ss_pred EEeeccCCceEEEEeccCcEEEEEecC----------CCCcceee--ccCCCEEEEe-cCceeEEeccccccc-eeeccC
Confidence 999999999999999999999887754 44888999 7888776665 567899999998653 555543
Q ss_pred cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEE-eccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCce
Q 019405 257 RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCF-IGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL 335 (341)
Q Consensus 257 ~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 335 (341)
...|.+..++|+...+++|+.|..++.||..+++.+..+ ++| .++|.++.|+|+|...++||.||+|++|.+..++.
T Consensus 224 -P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh-~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 224 -PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGH-FGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred -ccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCC-CCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 346888999999999999999999999999999999886 777 89999999999999999999999999999887664
Q ss_pred e
Q 019405 336 L 336 (341)
Q Consensus 336 ~ 336 (341)
.
T Consensus 302 ~ 302 (334)
T KOG0278|consen 302 Y 302 (334)
T ss_pred h
Confidence 3
No 62
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.8e-29 Score=214.71 Aligned_cols=254 Identities=17% Similarity=0.208 Sum_probs=193.9
Q ss_pred eecc-CCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchh---------------------------eeec-
Q 019405 43 ERWG-DPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRV---------------------------AISN- 93 (341)
Q Consensus 43 ~~~~-~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~---------------------------~~~~- 93 (341)
+.+. +|.++|.++.||+|++ |||+|+.|+.|+||.+...+... ....
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGK----yLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~ 335 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGK----YLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSR 335 (712)
T ss_pred eccccccCCcEEEEEeCCCCc----eeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccc
Confidence 4455 7999999999999888 99999999999999886511000 0000
Q ss_pred -------cC-------CC----------CCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeeccccccc
Q 019405 94 -------AG-------DS----------GAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAES 149 (341)
Q Consensus 94 -------~~-------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~ 149 (341)
.. .. .+.+|.+.|..+.|.. ++.|++++.|.++++|.+...
T Consensus 336 ~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK---------n~fLLSSSMDKTVRLWh~~~~------ 400 (712)
T KOG0283|consen 336 TSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK---------NNFLLSSSMDKTVRLWHPGRK------ 400 (712)
T ss_pred ccccccccCCccccCCCccccccccchhhhhccchhheeccccc---------CCeeEeccccccEEeecCCCc------
Confidence 00 00 0123455565665532 238999999999999998743
Q ss_pred CCceEEEEEeecCCceEEEEecC-CCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCC
Q 019405 150 SCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR 228 (341)
Q Consensus 150 ~~~~v~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 228 (341)
..+++|. |...|+|++|+| |.+++++|+.|+.|+||++...+...-...+ .-|++++| .|+|+
T Consensus 401 --~CL~~F~--HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~----------~lITAvcy--~PdGk 464 (712)
T KOG0283|consen 401 --ECLKVFS--HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR----------DLITAVCY--SPDGK 464 (712)
T ss_pred --ceeeEEe--cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhh----------hhheeEEe--ccCCc
Confidence 3778875 678999999999 7899999999999999999877665444333 34999999 89999
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeEEEEe--c------CCCeEEEEEcCCC-ceEEEEeCCCCEEEEECCCCeEEeEEecc
Q 019405 229 KFVAGTNDHQVRLYDTSAQRRPVMSFDF--R------ETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLLGCFIGK 299 (341)
Q Consensus 229 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~------~~~v~~~~~~~~~-~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 299 (341)
..++|+.+|.+++|+....+. .....- | ...|+.+.|.|.. ..+++.+.|..|+|||.++.+++..|+++
T Consensus 465 ~avIGt~~G~C~fY~t~~lk~-~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~ 543 (712)
T KOG0283|consen 465 GAVIGTFNGYCRFYDTEGLKL-VSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGF 543 (712)
T ss_pred eEEEEEeccEEEEEEccCCeE-EEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhccc
Confidence 999999999999999887442 322221 1 2379999999854 35778889999999999999999999976
Q ss_pred ccC-ceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405 300 CSG-SIRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (341)
Q Consensus 300 ~~~-~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 332 (341)
+.. .=....|+.||++|+++++|..|++|++..
T Consensus 544 ~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 544 RNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred ccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 433 335678999999999999999999999854
No 63
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.9e-29 Score=187.86 Aligned_cols=248 Identities=17% Similarity=0.206 Sum_probs=198.3
Q ss_pred CceeEEEeccCCCCCceEEEEc-------cCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccccccc
Q 019405 51 SNCVLAASIDDSQNDPLLAVAR-------KNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS 123 (341)
Q Consensus 51 ~~~~~~~s~~~~~~~~~l~~~~-------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (341)
.-+.+.|||-... +||++. ..|++.|.++...+-+.+.... .-.+..-.++|.+...+
T Consensus 10 ~GysvqfSPf~~n---rLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~------d~~D~LfdV~Wse~~e~------ 74 (311)
T KOG0277|consen 10 HGYSVQFSPFVEN---RLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSY------DTEDGLFDVAWSENHEN------ 74 (311)
T ss_pred ccceeEecccccc---hhheeehhhcccccCceEEEEecCCCCCeEEEEee------ecccceeEeeecCCCcc------
Confidence 3456677776553 244432 2689999999766666655543 12367778888777665
Q ss_pred ceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCC-CCEEEEeeCCCeEEEEECCCCceeeecCC
Q 019405 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDKCEKIWTAKP 202 (341)
Q Consensus 124 ~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~v~i~d~~~~~~~~~~~~ 202 (341)
.+++++.||++++|++.. ..++|+.|. +|..+|.++.|++. ...+++++.|++|++|+...++.+.++.+
T Consensus 75 -~~~~a~GDGSLrl~d~~~-------~s~Pi~~~k-EH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~g 145 (311)
T KOG0277|consen 75 -QVIAASGDGSLRLFDLTM-------PSKPIHKFK-EHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNG 145 (311)
T ss_pred -eEEEEecCceEEEeccCC-------CCcchhHHH-hhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecC
Confidence 899999999999999643 334788887 57889999999984 56677889999999999998888888887
Q ss_pred CCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcC-CCceEEEEeCCCC
Q 019405 203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEP-DSFNIYIGNGSGD 281 (341)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~ 281 (341)
+. ..|....|. +...+++++++.|+++++||++...+ ...+..|...|.++.|+. +...|++|+.|+.
T Consensus 146 h~---------~~Iy~a~~s-p~~~nlfas~Sgd~~l~lwdvr~~gk-~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~ 214 (311)
T KOG0277|consen 146 HN---------SCIYQAAFS-PHIPNLFASASGDGTLRLWDVRSPGK-FMSIEAHNSEILCCDWSKYNHNVLATGGVDNL 214 (311)
T ss_pred Cc---------cEEEEEecC-CCCCCeEEEccCCceEEEEEecCCCc-eeEEEeccceeEeecccccCCcEEEecCCCce
Confidence 54 779999995 33678999999999999999997655 444888999999999987 5578899999999
Q ss_pred EEEEECCCC-eEEeEEeccccCceeEEEecCCCC-EEEEEeCCCcEEEEEcCCCc
Q 019405 282 LASVDIRTG-KLLGCFIGKCSGSIRSIARHPTLP-IIASCGLDSYLRFWDIKTRQ 334 (341)
Q Consensus 282 i~iwd~~~~-~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~ 334 (341)
|+.||+++- .++..+.+| .-.|+.+.|||... +|++++.|-++||||...+.
T Consensus 215 vr~wDir~~r~pl~eL~gh-~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d 268 (311)
T KOG0277|consen 215 VRGWDIRNLRTPLFELNGH-GLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD 268 (311)
T ss_pred EEEEehhhccccceeecCC-ceEEEEEecCcchhhHhhhccccceEEecccccch
Confidence 999999875 468888888 89999999999654 89999999999999988544
No 64
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=3.3e-28 Score=181.91 Aligned_cols=273 Identities=13% Similarity=0.111 Sum_probs=222.1
Q ss_pred CCCCCceeeeecCCCCeEEEEEecCccCcccee--eeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcc
Q 019405 10 PGCPPLRALTFDSLGLIKVIEARGEHGGVPKVV--ERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL 87 (341)
Q Consensus 10 ~~~~~~~~~~~~~~g~i~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 87 (341)
-.|..-++.+++.|+++++|++... +.. ..+.+|...|.-+++.+...+ +|++++.|.+|++||...+++
T Consensus 28 wn~~g~~lasgs~dktv~v~n~e~~-----r~~~~~~~~gh~~svdql~w~~~~~d---~~atas~dk~ir~wd~r~~k~ 99 (313)
T KOG1407|consen 28 WNCDGTKLASGSFDKTVSVWNLERD-----RFRKELVYRGHTDSVDQLCWDPKHPD---LFATASGDKTIRIWDIRSGKC 99 (313)
T ss_pred EcccCceeeecccCCceEEEEecch-----hhhhhhcccCCCcchhhheeCCCCCc---ceEEecCCceEEEEEeccCcE
Confidence 3456678899999999999999986 222 245668888887777765553 699999999999999999999
Q ss_pred hheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEE
Q 019405 88 RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAF 167 (341)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~ 167 (341)
...+... ..-..+.|.+.+. +++++..|..+.+.+....+ .+.... ..-.+..
T Consensus 100 ~~~i~~~---------~eni~i~wsp~g~--------~~~~~~kdD~it~id~r~~~--------~~~~~~--~~~e~ne 152 (313)
T KOG1407|consen 100 TARIETK---------GENINITWSPDGE--------YIAVGNKDDRITFIDARTYK--------IVNEEQ--FKFEVNE 152 (313)
T ss_pred EEEeecc---------CcceEEEEcCCCC--------EEEEecCcccEEEEEecccc--------eeehhc--ccceeee
Confidence 8877652 4444567777776 99999999999999876543 111111 2345677
Q ss_pred EEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCC
Q 019405 168 SKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ 247 (341)
Q Consensus 168 ~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 247 (341)
+.|+.++.+++.-...|.|.|......+++..++.|. ....|+.| +|+|++||+|+.|..+.+||+...
T Consensus 153 ~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~---------snCicI~f--~p~GryfA~GsADAlvSLWD~~EL 221 (313)
T KOG1407|consen 153 ISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHP---------SNCICIEF--DPDGRYFATGSADALVSLWDVDEL 221 (313)
T ss_pred eeecCCCCEEEEecCCceEEEEeccccccccccccCC---------cceEEEEE--CCCCceEeeccccceeeccChhHh
Confidence 8888778887777777899999998888888888865 44788889 999999999999999999999986
Q ss_pred CceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCC-----
Q 019405 248 RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLD----- 322 (341)
Q Consensus 248 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d----- 322 (341)
-+ ++.+..+.-+|+.+.|+.+|++||+|+.|-.|-|=++++|..+..++. .++-+.++|+|...+||-++.|
T Consensus 222 iC-~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~--~~~t~tVAWHPk~~LLAyA~ddk~~d~ 298 (313)
T KOG1407|consen 222 IC-ERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPC--EGPTFTVAWHPKRPLLAYACDDKDGDS 298 (313)
T ss_pred hh-heeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeec--cCCceeEEecCCCceeeEEecCCCCcc
Confidence 54 788888999999999999999999999999999999999999998874 7899999999999999988755
Q ss_pred ----CcEEEEEcC
Q 019405 323 ----SYLRFWDIK 331 (341)
Q Consensus 323 ----g~v~iwd~~ 331 (341)
|.|++|-+.
T Consensus 299 ~reag~vKiFG~~ 311 (313)
T KOG1407|consen 299 NREAGTVKIFGLS 311 (313)
T ss_pred ccccceeEEecCC
Confidence 466776544
No 65
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=6.7e-30 Score=202.34 Aligned_cols=266 Identities=15% Similarity=0.161 Sum_probs=214.8
Q ss_pred ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 94 (341)
-++.+++.|..|++|+..... .....++.+..++++.+.|-.+.+ ++++++.|+.+++|++.+.+...++.+|
T Consensus 188 dtlatgg~Dr~Ik~W~v~~~k---~~~~~tLaGs~g~it~~d~d~~~~----~~iAas~d~~~r~Wnvd~~r~~~TLsGH 260 (459)
T KOG0288|consen 188 DTLATGGSDRIIKLWNVLGEK---SELISTLAGSLGNITSIDFDSDNK----HVIAASNDKNLRLWNVDSLRLRHTLSGH 260 (459)
T ss_pred chhhhcchhhhhhhhhcccch---hhhhhhhhccCCCcceeeecCCCc----eEEeecCCCceeeeeccchhhhhhhccc
Confidence 456778888889999988761 235567777788899888887777 7999999999999999999999999884
Q ss_pred CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC
Q 019405 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (341)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~ 174 (341)
.+.++++.+..... .+++++.|.+++.|++.... ..+... ....+..+..+ .
T Consensus 261 --------tdkVt~ak~~~~~~--------~vVsgs~DRtiK~WDl~k~~--------C~kt~l--~~S~cnDI~~~--~ 312 (459)
T KOG0288|consen 261 --------TDKVTAAKFKLSHS--------RVVSGSADRTIKLWDLQKAY--------CSKTVL--PGSQCNDIVCS--I 312 (459)
T ss_pred --------ccceeeehhhcccc--------ceeeccccchhhhhhhhhhh--------eecccc--ccccccceEec--c
Confidence 57888888876665 79999999999999986532 111111 11223333333 5
Q ss_pred CEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEE
Q 019405 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF 254 (341)
Q Consensus 175 ~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 254 (341)
..+++|-.|++|++||++........+.+ +.|+++.. ++++..|++++.|.++.++|+++.+. .+.+
T Consensus 313 ~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g----------g~vtSl~l--s~~g~~lLsssRDdtl~viDlRt~eI-~~~~ 379 (459)
T KOG0288|consen 313 SDVISGHFDKKVRFWDIRSADKTRSVPLG----------GRVTSLDL--SMDGLELLSSSRDDTLKVIDLRTKEI-RQTF 379 (459)
T ss_pred eeeeecccccceEEEeccCCceeeEeecC----------cceeeEee--ccCCeEEeeecCCCceeeeecccccE-EEEe
Confidence 67888999999999999999988887765 44999999 88999999999999999999998653 5555
Q ss_pred Eec----CCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccC-ceeEEEecCCCCEEEEEeCCCcEEEE
Q 019405 255 DFR----ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSG-SIRSIARHPTLPIIASCGLDSYLRFW 328 (341)
Q Consensus 255 ~~~----~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~s~~~dg~v~iw 328 (341)
... ....+.+.|||++.|+++|+.||.|+||++.++++...+...+.. .|++++|+|.|..|++++.++.+.+|
T Consensus 380 sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 380 SAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred eccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 431 234788999999999999999999999999999999888876333 69999999999999999999999999
No 66
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=5.5e-28 Score=192.76 Aligned_cols=270 Identities=11% Similarity=0.117 Sum_probs=225.0
Q ss_pred ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 94 (341)
-..++|+.|...-+++...+ +++..|.+|...++.+.+.++.. .+++++.|-.|+||.............
T Consensus 232 ~~ilTGG~d~~av~~d~~s~-----q~l~~~~Gh~kki~~v~~~~~~~----~v~~aSad~~i~vws~~~~s~~~~~~~- 301 (506)
T KOG0289|consen 232 SKILTGGEDKTAVLFDKPSN-----QILATLKGHTKKITSVKFHKDLD----TVITASADEIIRVWSVPLSSEPTSSRP- 301 (506)
T ss_pred CcceecCCCCceEEEecchh-----hhhhhccCcceEEEEEEeccchh----heeecCCcceEEeeccccccCcccccc-
Confidence 44778888888888888877 77888999999999999988777 699999999999999977665444443
Q ss_pred CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEee-cCCceEEEEecCC
Q 019405 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC-ASGTIAFSKVDIS 173 (341)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~-~~~~i~~~~~~~~ 173 (341)
|+.++..+...+... +|++++.|+...+.+++... .+.+.... ..-.+.+.+|+||
T Consensus 302 -------h~~~V~~ls~h~tge--------YllsAs~d~~w~Fsd~~~g~--------~lt~vs~~~s~v~~ts~~fHpD 358 (506)
T KOG0289|consen 302 -------HEEPVTGLSLHPTGE--------YLLSASNDGTWAFSDISSGS--------QLTVVSDETSDVEYTSAAFHPD 358 (506)
T ss_pred -------ccccceeeeeccCCc--------EEEEecCCceEEEEEccCCc--------EEEEEeeccccceeEEeeEcCC
Confidence 678888888887777 99999999999999987544 33333332 2346899999999
Q ss_pred CCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEE
Q 019405 174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS 253 (341)
Q Consensus 174 ~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 253 (341)
|.++.+|..|+.|+|||+..+.....|.+|. ++|..+.| +.+|.+|+++++|+.|++||+|..+. .++
T Consensus 359 gLifgtgt~d~~vkiwdlks~~~~a~Fpght---------~~vk~i~F--sENGY~Lat~add~~V~lwDLRKl~n-~kt 426 (506)
T KOG0289|consen 359 GLIFGTGTPDGVVKIWDLKSQTNVAKFPGHT---------GPVKAISF--SENGYWLATAADDGSVKLWDLRKLKN-FKT 426 (506)
T ss_pred ceEEeccCCCceEEEEEcCCccccccCCCCC---------CceeEEEe--ccCceEEEEEecCCeEEEEEehhhcc-cce
Confidence 9999999999999999999998888888865 77999999 99999999999999999999998664 666
Q ss_pred EEec-CCCeEEEEEcCCCceEEEEeCCCCEEEEECC--CCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEc
Q 019405 254 FDFR-ETPIKAVAEEPDSFNIYIGNGSGDLASVDIR--TGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDI 330 (341)
Q Consensus 254 ~~~~-~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~ 330 (341)
+... ..++.++.|.+.|.+|+.++.|=.|++++-. +..++..+..| .+..+.+.|....++++++|.|..++++.+
T Consensus 427 ~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~-sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 427 IQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADH-SGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhc-ccccceeeecccceEEeeccchhheEEeec
Confidence 6543 2479999999999999999887677777643 55677778777 788999999999999999999999988764
No 67
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=6.9e-28 Score=184.85 Aligned_cols=273 Identities=15% Similarity=0.231 Sum_probs=212.2
Q ss_pred ceeeeecCCCCeEEEEEecCcc-----Cccce--eeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcc
Q 019405 15 LRALTFDSLGLIKVIEARGEHG-----GVPKV--VERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL 87 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~~-----g~~~~--~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 87 (341)
|++++|+-...|--+.+...+. ..+.+ ...+..|.++++++|.+ ++++|+|+.|-+|+|||+...+.
T Consensus 2 m~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs------~~~~aSGssDetI~IYDm~k~~q 75 (362)
T KOG0294|consen 2 MEIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS------GPYVASGSSDETIHIYDMRKRKQ 75 (362)
T ss_pred eeEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec------ceeEeccCCCCcEEEEeccchhh
Confidence 5778887777776565554421 11222 34567799999999965 45899999999999999999888
Q ss_pred hheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEE
Q 019405 88 RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAF 167 (341)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~ 167 (341)
+..+..| .+.++++.+..+.... .|++|+.||.+.+|++..-. .+.... .|.+.|+.
T Consensus 76 lg~ll~H--------agsitaL~F~~~~S~s------hLlS~sdDG~i~iw~~~~W~--------~~~slK-~H~~~Vt~ 132 (362)
T KOG0294|consen 76 LGILLSH--------AGSITALKFYPPLSKS------HLLSGSDDGHIIIWRVGSWE--------LLKSLK-AHKGQVTD 132 (362)
T ss_pred hcceecc--------ccceEEEEecCCcchh------heeeecCCCcEEEEEcCCeE--------Eeeeec-ccccccce
Confidence 8888764 5889999998776532 89999999999999986443 344444 35667999
Q ss_pred EEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCC
Q 019405 168 SKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ 247 (341)
Q Consensus 168 ~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 247 (341)
++++|.+++.++.+.|+.++.||+-+|+.-..+.-... .+.+.| .|.|.+++.+..+ .|-+|.+.+.
T Consensus 133 lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~----------at~v~w--~~~Gd~F~v~~~~-~i~i~q~d~A 199 (362)
T KOG0294|consen 133 LSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNK----------ATLVSW--SPQGDHFVVSGRN-KIDIYQLDNA 199 (362)
T ss_pred eEecCCCceEEEEcCCceeeeehhhcCccceeeccCCc----------ceeeEE--cCCCCEEEEEecc-EEEEEecccH
Confidence 99999999999999999999999998877665543321 344889 8899988888765 6899988874
Q ss_pred CceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEe--cCCCCEEEEEeCCCcE
Q 019405 248 RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIAR--HPTLPIIASCGLDSYL 325 (341)
Q Consensus 248 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~s~~~dg~v 325 (341)
+. ...+. ....+.++.|- ++..|++|..|+.|.+||..+..+...+.+| ...|-++.+ .|++.+|+|+|.||.|
T Consensus 200 ~v-~~~i~-~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH-~~RVK~i~~~~~~~~~~lvTaSSDG~I 275 (362)
T KOG0294|consen 200 SV-FREIE-NPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAH-ENRVKDIASYTNPEHEYLVTASSDGFI 275 (362)
T ss_pred hH-hhhhh-ccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecc-hhheeeeEEEecCCceEEEEeccCceE
Confidence 42 22222 22456677775 4568999999999999999999999999998 999999984 4677899999999999
Q ss_pred EEEEcCCC
Q 019405 326 RFWDIKTR 333 (341)
Q Consensus 326 ~iwd~~~~ 333 (341)
++||++..
T Consensus 276 ~vWd~~~~ 283 (362)
T KOG0294|consen 276 KVWDIDME 283 (362)
T ss_pred EEEEcccc
Confidence 99999875
No 68
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=5.4e-29 Score=190.66 Aligned_cols=259 Identities=18% Similarity=0.252 Sum_probs=202.8
Q ss_pred ccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCC----cchheeeccC----CCC--CCCCCCceeeEeeeec
Q 019405 45 WGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG----DLRVAISNAG----DSG--AQPEDDGIVGLHLFKR 114 (341)
Q Consensus 45 ~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~----~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~ 114 (341)
+..|..++.+.+|++|++ ++|+|+.|..|+|.|++.- +......+.. +.. .-.|-+++.++.+.+.
T Consensus 108 lt~HK~~cR~aafs~DG~----lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr 183 (430)
T KOG0640|consen 108 LTSHKSPCRAAAFSPDGS----LVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR 183 (430)
T ss_pred EeecccceeeeeeCCCCc----EEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence 456889999999998888 8999999999999998721 1111111100 000 0125688889998888
Q ss_pred cccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCC
Q 019405 115 QREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC 194 (341)
Q Consensus 115 ~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~ 194 (341)
.. .|++++.|++++++|+...... ...+++. ...+|.++.|+|.|.+++.|..-.++++||+++-
T Consensus 184 e~--------ILiS~srD~tvKlFDfsK~saK-----rA~K~~q--d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~ 248 (430)
T KOG0640|consen 184 ET--------ILISGSRDNTVKLFDFSKTSAK-----RAFKVFQ--DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTY 248 (430)
T ss_pred hh--------eEEeccCCCeEEEEecccHHHH-----HHHHHhh--ccceeeeEeecCCCceEEEecCCCceeEEeccce
Confidence 77 9999999999999998654321 1223332 2468999999999999999999999999999998
Q ss_pred ceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEE-ecC-CCeEEEEEcCCCce
Q 019405 195 EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD-FRE-TPIKAVAEEPDSFN 272 (341)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~-~~v~~~~~~~~~~~ 272 (341)
++........ .|...|+++.+ ++.+++.++++.||.|++||--+.++ +.++. .|. ..|.+..|..++++
T Consensus 249 QcfvsanPd~------qht~ai~~V~Y--s~t~~lYvTaSkDG~IklwDGVS~rC-v~t~~~AH~gsevcSa~Ftkn~ky 319 (430)
T KOG0640|consen 249 QCFVSANPDD------QHTGAITQVRY--SSTGSLYVTASKDGAIKLWDGVSNRC-VRTIGNAHGGSEVCSAVFTKNGKY 319 (430)
T ss_pred eEeeecCccc------ccccceeEEEe--cCCccEEEEeccCCcEEeeccccHHH-HHHHHhhcCCceeeeEEEccCCeE
Confidence 7765544222 25678999999 89999999999999999999887665 55553 343 47899999999999
Q ss_pred EEEEeCCCCEEEEECCCCeEEeEEecc------------------------------------------------ccCce
Q 019405 273 IYIGNGSGDLASVDIRTGKLLGCFIGK------------------------------------------------CSGSI 304 (341)
Q Consensus 273 l~~g~~dg~i~iwd~~~~~~~~~~~~~------------------------------------------------~~~~i 304 (341)
+++.+.|..+++|.+.+++++..+.+. |++.+
T Consensus 320 iLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~ 399 (430)
T KOG0640|consen 320 ILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAV 399 (430)
T ss_pred EeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCc
Confidence 999999999999999988877665432 57788
Q ss_pred eEEEecCCCCEEEEEeCCCcEEEEEcC
Q 019405 305 RSIARHPTLPIIASCGLDSYLRFWDIK 331 (341)
Q Consensus 305 ~~~~~~~~~~~l~s~~~dg~v~iwd~~ 331 (341)
..+.-+|.++.+++++.|-.+|+|--+
T Consensus 400 R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 400 RWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred eEEEeCCCCCceeeecccceeeeeeec
Confidence 999999999999999999999999644
No 69
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=2.5e-27 Score=204.86 Aligned_cols=262 Identities=11% Similarity=0.056 Sum_probs=189.1
Q ss_pred ceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeec-----cCCCCCCCCCCceeeEeeeecccccccccccee
Q 019405 52 NCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN-----AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL 126 (341)
Q Consensus 52 ~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 126 (341)
+.+.+.+++.. .++++..+.....|+...+..+..+.. .......+|.+.+.++.|.+.+.. .|
T Consensus 23 i~~~~~~~d~~----~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~-------~L 91 (493)
T PTZ00421 23 VTPSTALWDCS----NTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQ-------KL 91 (493)
T ss_pred cccccccCCCC----CcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCC-------EE
Confidence 44445555544 367777777777777644322111110 001123357788999998773332 89
Q ss_pred EEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC-CEEEEeeCCCeEEEEECCCCceeeecCCCCC
Q 019405 127 LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPK 205 (341)
Q Consensus 127 ~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~ 205 (341)
++++.|+++++|++....... .....+..+. .|...|.+++|+|++ ++|++++.|++|++||+++++....+..+.
T Consensus 92 aSgS~DgtIkIWdi~~~~~~~-~~~~~l~~L~-gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~- 168 (493)
T PTZ00421 92 FTASEDGTIMGWGIPEEGLTQ-NISDPIVHLQ-GHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHS- 168 (493)
T ss_pred EEEeCCCEEEEEecCCCcccc-ccCcceEEec-CCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCC-
Confidence 999999999999986532110 0112334443 367889999999975 799999999999999999998887776643
Q ss_pred CccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCC-eEEEEEcCCCceEEEEe----CCC
Q 019405 206 NSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETP-IKAVAEEPDSFNIYIGN----GSG 280 (341)
Q Consensus 206 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~g~----~dg 280 (341)
..|.+++| +|++.+|++++.|++|++||+++++. +..+..|... ...+.|.+++..+++++ .|+
T Consensus 169 --------~~V~sla~--spdG~lLatgs~Dg~IrIwD~rsg~~-v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr 237 (493)
T PTZ00421 169 --------DQITSLEW--NLDGSLLCTTSKDKKLNIIDPRDGTI-VSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQR 237 (493)
T ss_pred --------CceEEEEE--ECCCCEEEEecCCCEEEEEECCCCcE-EEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCC
Confidence 56999999 88999999999999999999998764 7788888764 44678898877777654 478
Q ss_pred CEEEEECCCCe-EEeEEeccccCceeEEEecCCCCEEEEEe-CCCcEEEEEcCCCceeee
Q 019405 281 DLASVDIRTGK-LLGCFIGKCSGSIRSIARHPTLPIIASCG-LDSYLRFWDIKTRQLLSA 338 (341)
Q Consensus 281 ~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~ 338 (341)
.|++||+++.. ++.....+....+....|++++.+|++++ .|+.|++||+.+++++..
T Consensus 238 ~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 238 QIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFC 297 (493)
T ss_pred eEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEE
Confidence 99999998764 34334333245566678999999998887 499999999999887654
No 70
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=2.1e-27 Score=178.55 Aligned_cols=248 Identities=12% Similarity=0.139 Sum_probs=193.8
Q ss_pred eeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcc---hheeeccCCCCCCCCCCceeeEeeeeccccc
Q 019405 42 VERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL---RVAISNAGDSGAQPEDDGIVGLHLFKRQREE 118 (341)
Q Consensus 42 ~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (341)
.+++.+|.+.+-.+++.+.. |..||+++.|..||||+...+.. ...+.. .|...+.+++|.+...
T Consensus 7 ~~~~~gh~~r~W~~awhp~~---g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~-------~hkrsVRsvAwsp~g~-- 74 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGK---GVILASCGTDKAVRIWSTSSGDSWTCKTVLDD-------GHKRSVRSVAWSPHGR-- 74 (312)
T ss_pred EEeecCCCCcEEEEEeccCC---ceEEEeecCCceEEEEecCCCCcEEEEEeccc-------cchheeeeeeecCCCc--
Confidence 34566777878777776652 44899999999999999975322 222222 3667788888877766
Q ss_pred cccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCc---
Q 019405 119 SSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE--- 195 (341)
Q Consensus 119 ~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~--- 195 (341)
+|++++.|.++.||.-... +-..+...+ .|...|.|++|+++|++||+++.|..|-||.+..+.
T Consensus 75 ------~La~aSFD~t~~Iw~k~~~------efecv~~lE-GHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfe 141 (312)
T KOG0645|consen 75 ------YLASASFDATVVIWKKEDG------EFECVATLE-GHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFE 141 (312)
T ss_pred ------EEEEeeccceEEEeecCCC------ceeEEeeee-ccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEE
Confidence 9999999999999974321 112333333 467889999999999999999999999999987543
Q ss_pred eeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCC--CceeEEEEecCCCeEEEEEcCCCceE
Q 019405 196 KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ--RRPVMSFDFRETPIKAVAEEPDSFNI 273 (341)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l 273 (341)
....++.|. .-|..+.| +|...+|++++.|++|++|+-... -..++++.+|+..|.+++|+|.|..|
T Consensus 142 c~aVL~~Ht---------qDVK~V~W--HPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl 210 (312)
T KOG0645|consen 142 CIAVLQEHT---------QDVKHVIW--HPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRL 210 (312)
T ss_pred EEeeecccc---------ccccEEEE--cCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceE
Confidence 345556654 34888999 788899999999999999987632 23588999999999999999999999
Q ss_pred EEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405 274 YIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (341)
Q Consensus 274 ~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 332 (341)
++++.|++++||-.. ..+...|..+++.+.|. ...|++++.|+.|++|.-..
T Consensus 211 ~s~sdD~tv~Iw~~~-----~~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~ 262 (312)
T KOG0645|consen 211 VSCSDDGTVSIWRLY-----TDLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESD 262 (312)
T ss_pred EEecCCcceEeeeec-----cCcchhcccceEeeeec--ccceEeccCCCEEEEEEecC
Confidence 999999999999765 23333347899999998 55899999999999997654
No 71
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=7e-28 Score=194.80 Aligned_cols=245 Identities=10% Similarity=0.113 Sum_probs=195.8
Q ss_pred eeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccc
Q 019405 43 ERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSR 122 (341)
Q Consensus 43 ~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (341)
.++......++.+.|..|+. +||.|+..|.|+|+|..+...+..+..| ..++....+.+.++.
T Consensus 62 k~~srFk~~v~s~~fR~DG~----LlaaGD~sG~V~vfD~k~r~iLR~~~ah--------~apv~~~~f~~~d~t----- 124 (487)
T KOG0310|consen 62 KTFSRFKDVVYSVDFRSDGR----LLAAGDESGHVKVFDMKSRVILRQLYAH--------QAPVHVTKFSPQDNT----- 124 (487)
T ss_pred hhHHhhccceeEEEeecCCe----EEEccCCcCcEEEeccccHHHHHHHhhc--------cCceeEEEecccCCe-----
Confidence 34545567788888887777 8999999999999998776677888775 344444444443332
Q ss_pred cceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCC-CCEEEEeeCCCeEEEEECCCC-ceeeec
Q 019405 123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDKC-EKIWTA 200 (341)
Q Consensus 123 ~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~v~i~d~~~~-~~~~~~ 200 (341)
.+++|+.|+.+++|++... .+...-..|...|.|.+++|. +.++++|+.||.|++||++.. ..+.++
T Consensus 125 --~l~s~sDd~v~k~~d~s~a---------~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el 193 (487)
T KOG0310|consen 125 --MLVSGSDDKVVKYWDLSTA---------YVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL 193 (487)
T ss_pred --EEEecCCCceEEEEEcCCc---------EEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe
Confidence 8889999999999998543 343333456788999999985 458999999999999999876 455554
Q ss_pred CCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCC
Q 019405 201 KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG 280 (341)
Q Consensus 201 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg 280 (341)
. |..+|..+.+ -|.|.++++++. ..|++||+.++.+.+..+..|...|+|+++..++..|++|+-|+
T Consensus 194 n----------hg~pVe~vl~--lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~ 260 (487)
T KOG0310|consen 194 N----------HGCPVESVLA--LPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDR 260 (487)
T ss_pred c----------CCCceeeEEE--cCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeeccccc
Confidence 4 3356899999 578889998864 58999999977765666666999999999999999999999999
Q ss_pred CEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEc
Q 019405 281 DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDI 330 (341)
Q Consensus 281 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~ 330 (341)
.+++||+.+.+.++.+.. .++|.+++.+|+++.++.|-.||.+.+=+.
T Consensus 261 ~VKVfd~t~~Kvv~s~~~--~~pvLsiavs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 261 HVKVFDTTNYKVVHSWKY--PGPVLSIAVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred ceEEEEccceEEEEeeec--ccceeeEEecCCCceEEEecccceeeeehh
Confidence 999999999999999986 589999999999999999999998876543
No 72
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=6.9e-29 Score=207.11 Aligned_cols=290 Identities=15% Similarity=0.193 Sum_probs=229.0
Q ss_pred cCCCCCce-eeeecCCCCeEEEEEecCccCcc-ceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCC-
Q 019405 9 CPGCPPLR-ALTFDSLGLIKVIEARGEHGGVP-KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG- 85 (341)
Q Consensus 9 ~~~~~~~~-~~~~~~~g~i~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~- 85 (341)
-+..|.-+ +++++.||.|++|+.....+..- ....++..|..-+.-++.+.++. -|++++.|-+|++|+...+
T Consensus 31 q~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~----tlIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 31 QLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK----TLISASSDTTVKVWNAHKDN 106 (735)
T ss_pred cccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC----ceEEecCCceEEEeecccCc
Confidence 35566667 99999999999999887632211 12456777888898888777775 5999999999999999876
Q ss_pred -cchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEe--ecC
Q 019405 86 -DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV--CAS 162 (341)
Q Consensus 86 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~--~~~ 162 (341)
-++.++.. |.+.+.|+++...... .+++|+-|+.|.+|+++......-.....+..-+. .+.
T Consensus 107 ~~c~stir~--------H~DYVkcla~~ak~~~-------lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k 171 (735)
T KOG0308|consen 107 TFCMSTIRT--------HKDYVKCLAYIAKNNE-------LVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPK 171 (735)
T ss_pred chhHhhhhc--------ccchheeeeecccCce-------eEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCc
Confidence 56666766 5688999988433332 89999999999999998653200001111111111 345
Q ss_pred CceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEE
Q 019405 163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY 242 (341)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iw 242 (341)
..|++++.++.+..+++|+..+.+++||.++++.+..+.+|. ..|.++.. +++|..+++++.||+|++|
T Consensus 172 ~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHT---------dNVr~ll~--~dDGt~~ls~sSDgtIrlW 240 (735)
T KOG0308|consen 172 DSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHT---------DNVRVLLV--NDDGTRLLSASSDGTIRLW 240 (735)
T ss_pred cceeeeecCCcceEEEecCcccceEEeccccccceeeeeccc---------cceEEEEE--cCCCCeEeecCCCceEEee
Confidence 679999999999999999999999999999999999999876 55899988 8999999999999999999
Q ss_pred EcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCe-EEeEEeccccCceeEEEecCCCCEEEEEeC
Q 019405 243 DTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK-LLGCFIGKCSGSIRSIARHPTLPIIASCGL 321 (341)
Q Consensus 243 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 321 (341)
|+...++ +.++..|...|+++..+|+=..+++|+.||.|+.=|+++.. +...++. ..+|..+..+...+-+-.++.
T Consensus 241 dLgqQrC-l~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~--daPv~~l~~~~~~~~~WvtTt 317 (735)
T KOG0308|consen 241 DLGQQRC-LATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKE--DAPVLKLHLHEHDNSVWVTTT 317 (735)
T ss_pred eccccce-eeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecC--CCchhhhhhccccCCceeeec
Confidence 9998665 89999999999999999999999999999999999999853 3333332 568888888865555577788
Q ss_pred CCcEEEEEcC
Q 019405 322 DSYLRFWDIK 331 (341)
Q Consensus 322 dg~v~iwd~~ 331 (341)
|+.|+-|..+
T Consensus 318 ds~I~rW~~~ 327 (735)
T KOG0308|consen 318 DSSIKRWKLE 327 (735)
T ss_pred cccceecCCc
Confidence 9999999765
No 73
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=1.6e-28 Score=199.86 Aligned_cols=288 Identities=15% Similarity=0.100 Sum_probs=214.5
Q ss_pred CCceeeeecCCCCeEEEEEecCccCccceeeec-cCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchhee
Q 019405 13 PPLRALTFDSLGLIKVIEARGEHGGVPKVVERW-GDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAI 91 (341)
Q Consensus 13 ~~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 91 (341)
+..|+++|+-|-.|+.|+......... ....+ ......+.++.|++.+. .|++.+.....+|+|....+.....
T Consensus 178 ~GaR~~sGs~Dy~v~~wDf~gMdas~~-~fr~l~P~E~h~i~sl~ys~Tg~----~iLvvsg~aqakl~DRdG~~~~e~~ 252 (641)
T KOG0772|consen 178 SGARFVSGSLDYTVKFWDFQGMDASMR-SFRQLQPCETHQINSLQYSVTGD----QILVVSGSAQAKLLDRDGFEIVEFS 252 (641)
T ss_pred CCceeeeccccceEEEEecccccccch-hhhccCcccccccceeeecCCCC----eEEEEecCcceeEEccCCceeeeee
Confidence 447999999999999999987632211 11112 12445677778776544 6777777889999998654444444
Q ss_pred eccC---CCC-CCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeec----CC
Q 019405 92 SNAG---DSG-AQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA----SG 163 (341)
Q Consensus 92 ~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~----~~ 163 (341)
++-. +.. ..+|...++|-+|.+.... .+++++.||+++||+++..+. ...++.... .-
T Consensus 253 KGDQYI~Dm~nTKGHia~lt~g~whP~~k~-------~FlT~s~DgtlRiWdv~~~k~-------q~qVik~k~~~g~Rv 318 (641)
T KOG0772|consen 253 KGDQYIRDMYNTKGHIAELTCGCWHPDNKE-------EFLTCSYDGTLRIWDVNNTKS-------QLQVIKTKPAGGKRV 318 (641)
T ss_pred ccchhhhhhhccCCceeeeeccccccCccc-------ceEEecCCCcEEEEecCCchh-------heeEEeeccCCCccc
Confidence 3311 111 1245567778888777665 899999999999999987652 333333221 23
Q ss_pred ceEEEEecCCCCEEEEeeCCCeEEEEECCCCce--eeecC-CCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEE
Q 019405 164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK--IWTAK-PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVR 240 (341)
Q Consensus 164 ~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~--~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~ 240 (341)
+++.++|++++++||+|..||.|.+|+...... ...+. .|.. ...|+|+.| +++|++|++-+.|++++
T Consensus 319 ~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~-------g~~Itsi~F--S~dg~~LlSRg~D~tLK 389 (641)
T KOG0772|consen 319 PVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLP-------GQDITSISF--SYDGNYLLSRGFDDTLK 389 (641)
T ss_pred CceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCC-------CCceeEEEe--ccccchhhhccCCCcee
Confidence 578999999999999999999999999754221 11111 1211 135999999 99999999999999999
Q ss_pred EEEcCCCCceeEEEEe--cCCCeEEEEEcCCCceEEEEeC------CCCEEEEECCCCeEEeEEeccccCceeEEEecCC
Q 019405 241 LYDTSAQRRPVMSFDF--RETPIKAVAEEPDSFNIYIGNG------SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPT 312 (341)
Q Consensus 241 iwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~g~~------dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~ 312 (341)
+||++..++++....+ ...+-+.++|||+.++|++|.. .|.+.+||..+.+.++++.-. ...|..+.|||.
T Consensus 390 vWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~-~aSvv~~~Whpk 468 (641)
T KOG0772|consen 390 VWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS-TASVVRCLWHPK 468 (641)
T ss_pred eeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC-CceEEEEeecch
Confidence 9999998888877665 2345678999999999999864 477999999999999998876 788999999999
Q ss_pred CCEEEEEeCCCcEEEEE
Q 019405 313 LPIIASCGLDSYLRFWD 329 (341)
Q Consensus 313 ~~~l~s~~~dg~v~iwd 329 (341)
-+.|..++.||.+++|=
T Consensus 469 LNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 469 LNQIFAGSGDGTAHVYY 485 (641)
T ss_pred hhheeeecCCCceEEEE
Confidence 99999999999998874
No 74
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=9.1e-29 Score=206.41 Aligned_cols=246 Identities=14% Similarity=0.235 Sum_probs=201.8
Q ss_pred CCCCCceEEEEccCCeEEEeeCCCCc------chheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccce
Q 019405 61 DSQNDPLLAVARKNGLTDILNPLNGD------LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGK 134 (341)
Q Consensus 61 ~~~~~~~l~~~~~dg~i~iw~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 134 (341)
.-|.+++|.+|+.||.|++|+..... ....++. |.+.+..+......+ .|++++.|-+
T Consensus 33 da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~--------HsDWVNDiiL~~~~~--------tlIS~SsDtT 96 (735)
T KOG0308|consen 33 DAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEH--------HSDWVNDIILCGNGK--------TLISASSDTT 96 (735)
T ss_pred cCCCCceEEecCCCceEEEeccccccCCcccchhhhhhh--------hHhHHhhHHhhcCCC--------ceEEecCCce
Confidence 34556789999999999999986422 2333443 446666666555555 8999999999
Q ss_pred eEEEEeeecccccccCCceEEEEEeecCCceEEEEe-cCCCCEEEEeeCCCeEEEEECCCC--ceeeecCCCCCCccCcc
Q 019405 135 ASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV-DISEKFSLFGGKGVEVNVWDLDKC--EKIWTAKPPPKNSLGIF 211 (341)
Q Consensus 135 ~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~-~~~~~~l~~~~~d~~v~i~d~~~~--~~~~~~~~~~~~~~~~~ 211 (341)
+++|+...... ..+.... .|...|.|+++ .++...+|+||.|+.|++||+.++ +.+..+.......+..+
T Consensus 97 VK~W~~~~~~~------~c~stir-~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG 169 (735)
T KOG0308|consen 97 VKVWNAHKDNT------FCMSTIR-THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSG 169 (735)
T ss_pred EEEeecccCcc------hhHhhhh-cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCC
Confidence 99999864420 0111111 35678999999 788899999999999999999987 45555555554555545
Q ss_pred CCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCe
Q 019405 212 TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK 291 (341)
Q Consensus 212 ~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~ 291 (341)
+...|++++. ++.+..+++|+..+.+++||.++.++ +..+++|...|..+..+++|..+++++.||+|++||+...+
T Consensus 170 ~k~siYSLA~--N~t~t~ivsGgtek~lr~wDprt~~k-imkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQr 246 (735)
T KOG0308|consen 170 PKDSIYSLAM--NQTGTIIVSGGTEKDLRLWDPRTCKK-IMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQR 246 (735)
T ss_pred Cccceeeeec--CCcceEEEecCcccceEEeccccccc-eeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccc
Confidence 6788999999 88899999999999999999999876 88899999999999999999999999999999999999999
Q ss_pred EEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCC
Q 019405 292 LLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR 333 (341)
Q Consensus 292 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 333 (341)
++.++..| ...|+++..+|+-.++.+|+.||.|..=|+++.
T Consensus 247 Cl~T~~vH-~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 247 CLATYIVH-KEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred eeeeEEec-cCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 99999998 778999999999999999999999999999874
No 75
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=4.8e-27 Score=204.17 Aligned_cols=261 Identities=13% Similarity=0.069 Sum_probs=180.8
Q ss_pred CCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcc-hheeeccCCCCCC
Q 019405 22 SLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL-RVAISNAGDSGAQ 100 (341)
Q Consensus 22 ~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~~ 100 (341)
.+|.+++|+.... ..+..+.+|...|..++|+++.. .+|++|+.|++|+|||+.++.. ...+.. ......
T Consensus 52 ~~gvI~L~~~~r~-----~~v~~L~gH~~~V~~lafsP~~~---~lLASgS~DgtIrIWDi~t~~~~~~~i~~-p~~~L~ 122 (568)
T PTZ00420 52 LIGAIRLENQMRK-----PPVIKLKGHTSSILDLQFNPCFS---EILASGSEDLTIRVWEIPHNDESVKEIKD-PQCILK 122 (568)
T ss_pred ceeEEEeeecCCC-----ceEEEEcCCCCCEEEEEEcCCCC---CEEEEEeCCCeEEEEECCCCCcccccccc-ceEEee
Confidence 3455566655443 45667889999999999988632 3799999999999999976432 111100 000012
Q ss_pred CCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEe
Q 019405 101 PEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFG 180 (341)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~ 180 (341)
.|...+.++.|.+.... .+++++.|+.+++||+.... .+.. ..+...|.+++|+|+|.+|+++
T Consensus 123 gH~~~V~sVaf~P~g~~-------iLaSgS~DgtIrIWDl~tg~--------~~~~--i~~~~~V~SlswspdG~lLat~ 185 (568)
T PTZ00420 123 GHKKKISIIDWNPMNYY-------IMCSSGFDSFVNIWDIENEK--------RAFQ--INMPKKLSSLKWNIKGNLLSGT 185 (568)
T ss_pred cCCCcEEEEEECCCCCe-------EEEEEeCCCeEEEEECCCCc--------EEEE--EecCCcEEEEEECCCCCEEEEE
Confidence 35677888888765441 56789999999999986433 2222 3345789999999999999999
Q ss_pred eCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCC----eEEEEEcCCCCceeEEEEe
Q 019405 181 GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH----QVRLYDTSAQRRPVMSFDF 256 (341)
Q Consensus 181 ~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~----~i~iwd~~~~~~~~~~~~~ 256 (341)
+.|+.|++||+++++.+..+..|..... ...+....| ++++.+|++++.|+ +|++||++....++..+..
T Consensus 186 s~D~~IrIwD~Rsg~~i~tl~gH~g~~~----s~~v~~~~f--s~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~l 259 (568)
T PTZ00420 186 CVGKHMHIIDPRKQEIASSFHIHDGGKN----TKNIWIDGL--GGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSI 259 (568)
T ss_pred ecCCEEEEEECCCCcEEEEEecccCCce----eEEEEeeeE--cCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEe
Confidence 9999999999999998888877653210 011233345 57888999887774 7999999975556665543
Q ss_pred cC--CCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCC
Q 019405 257 RE--TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP 314 (341)
Q Consensus 257 ~~--~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 314 (341)
+. ..+......+++.++++|+.|+.|++|++..+.....-...+..++.+++|.|...
T Consensus 260 d~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 260 DNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred cCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccccCCCccceEEccccc
Confidence 32 23333334556889999999999999999877532222222367889999999753
No 76
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=5.9e-27 Score=202.58 Aligned_cols=232 Identities=14% Similarity=0.146 Sum_probs=177.7
Q ss_pred eccCCCCCceeEEEec-cCCCCCceEEEEccCCeEEEeeCCCCcc-------hheeeccCCCCCCCCCCceeeEeeeecc
Q 019405 44 RWGDPHSSNCVLAASI-DDSQNDPLLAVARKNGLTDILNPLNGDL-------RVAISNAGDSGAQPEDDGIVGLHLFKRQ 115 (341)
Q Consensus 44 ~~~~~~~~~~~~~~s~-~~~~~~~~l~~~~~dg~i~iw~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (341)
.+.+|.+.|..++|++ ++. +|++|+.|++|+|||+.++.. +..+. .|...+.++.|.+..
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~----~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~--------gH~~~V~~l~f~P~~ 137 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQ----KLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQ--------GHTKKVGIVSFHPSA 137 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCC----EEEEEeCCCEEEEEecCCCccccccCcceEEec--------CCCCcEEEEEeCcCC
Confidence 3567999999999998 444 799999999999999976532 22233 356778888887654
Q ss_pred ccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCc
Q 019405 116 REESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE 195 (341)
Q Consensus 116 ~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~ 195 (341)
.+ .|++++.|+.++|||++... .+..+. .|...|.+++|+|++.+|++++.|+.|++||+++++
T Consensus 138 ~~-------iLaSgs~DgtVrIWDl~tg~--------~~~~l~-~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~ 201 (493)
T PTZ00421 138 MN-------VLASAGADMVVNVWDVERGK--------AVEVIK-CHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGT 201 (493)
T ss_pred CC-------EEEEEeCCCEEEEEECCCCe--------EEEEEc-CCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCc
Confidence 32 89999999999999986433 333433 356789999999999999999999999999999998
Q ss_pred eeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEe----CCCeEEEEEcCCCCceeEEEEecC-CCeEEEEEcCCC
Q 019405 196 KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT----NDHQVRLYDTSAQRRPVMSFDFRE-TPIKAVAEEPDS 270 (341)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~----~d~~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~ 270 (341)
.+..+..+.. .....+.| .+++..+++++ .|+.|++||+++...++.....+. ..+....|++++
T Consensus 202 ~v~tl~~H~~--------~~~~~~~w--~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~ 271 (493)
T PTZ00421 202 IVSSVEAHAS--------AKSQRCLW--AKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDT 271 (493)
T ss_pred EEEEEecCCC--------CcceEEEE--cCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCC
Confidence 8887766542 12345567 56666776654 478999999998666565554443 345566789999
Q ss_pred ceEEEEe-CCCCEEEEECCCCeEEeEEeccccCceeEEEecCCC
Q 019405 271 FNIYIGN-GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL 313 (341)
Q Consensus 271 ~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~ 313 (341)
.+|++++ .|+.|++||+.+++++.........++..++|.|.-
T Consensus 272 ~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 272 NLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred CEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccc
Confidence 9998887 599999999999998877665446678899999854
No 77
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=2.7e-27 Score=202.85 Aligned_cols=290 Identities=17% Similarity=0.203 Sum_probs=233.0
Q ss_pred ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 94 (341)
.+++.|+.+|.+++|++... +++++|+++...|+++.-+|.-. .+|.|..+|+|.|+|++.++.+.+++.
T Consensus 173 NKIvvGs~~G~lql~Nvrt~-----K~v~~f~~~~s~IT~ieqsPaLD----VVaiG~~~G~ViifNlK~dkil~sFk~- 242 (910)
T KOG1539|consen 173 NKIVVGSSQGRLQLWNVRTG-----KVVYTFQEFFSRITAIEQSPALD----VVAIGLENGTVIIFNLKFDKILMSFKQ- 242 (910)
T ss_pred eeEEEeecCCcEEEEEeccC-----cEEEEecccccceeEeccCCcce----EEEEeccCceEEEEEcccCcEEEEEEc-
Confidence 56889999999999999998 89999999999999887666555 799999999999999999999988886
Q ss_pred CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccc------------------------cccC
Q 019405 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS------------------------AESS 150 (341)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~------------------------~~~~ 150 (341)
..++++.+.+-..+.. .++++...|.+.+||++..+.. +.+.
T Consensus 243 -------d~g~VtslSFrtDG~p-------~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~ 308 (910)
T KOG1539|consen 243 -------DWGRVTSLSFRTDGNP-------LLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGA 308 (910)
T ss_pred -------cccceeEEEeccCCCe-------eEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccC
Confidence 2366777666544332 6777777788888887655430 1223
Q ss_pred CceEEEEEee----------------------------------------------------------------------
Q 019405 151 CSTVKSWNVC---------------------------------------------------------------------- 160 (341)
Q Consensus 151 ~~~v~~~~~~---------------------------------------------------------------------- 160 (341)
|+.+++|-..
T Consensus 309 DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~ 388 (910)
T KOG1539|consen 309 DNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVF 388 (910)
T ss_pred CCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccccccccccc
Confidence 3333333221
Q ss_pred ------------------------------------------cC----------------CceEEEEecCCCCEEEEeeC
Q 019405 161 ------------------------------------------AS----------------GTIAFSKVDISEKFSLFGGK 182 (341)
Q Consensus 161 ------------------------------------------~~----------------~~i~~~~~~~~~~~l~~~~~ 182 (341)
.. ..+.+++.++-|++.+.|+.
T Consensus 389 ~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S 468 (910)
T KOG1539|consen 389 STEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYS 468 (910)
T ss_pred chhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEecc
Confidence 00 13667788888999999999
Q ss_pred CCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeE
Q 019405 183 GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIK 262 (341)
Q Consensus 183 d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~ 262 (341)
.|.|-+|++.+|-....+.... .|...|+.++. ..-++.+++++.+|.+++||..+.. ++..+.. ..++.
T Consensus 469 ~G~Id~fNmQSGi~r~sf~~~~------ah~~~V~gla~--D~~n~~~vsa~~~Gilkfw~f~~k~-l~~~l~l-~~~~~ 538 (910)
T KOG1539|consen 469 KGTIDRFNMQSGIHRKSFGDSP------AHKGEVTGLAV--DGTNRLLVSAGADGILKFWDFKKKV-LKKSLRL-GSSIT 538 (910)
T ss_pred CCeEEEEEcccCeeecccccCc------cccCceeEEEe--cCCCceEEEccCcceEEEEecCCcc-eeeeecc-CCCcc
Confidence 9999999999988777663111 13467999999 7778889999999999999999744 4566653 35788
Q ss_pred EEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 263 AVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 263 ~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
.+..+.....++++..|-.|+++|..+.+.++.|.+| .+.|++++|||||++|++++.|++||+||+.+++++..+
T Consensus 539 ~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh-~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~ 614 (910)
T KOG1539|consen 539 GIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGH-GNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGL 614 (910)
T ss_pred eeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhcc-ccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeE
Confidence 8899888889999999999999999999999999998 999999999999999999999999999999999988754
No 78
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=1.1e-27 Score=190.95 Aligned_cols=230 Identities=14% Similarity=0.159 Sum_probs=197.2
Q ss_pred ceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeeccc
Q 019405 66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV 145 (341)
Q Consensus 66 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~ 145 (341)
+.+++|+.|..+.++|...++.+..+++| ...+..+.+.+... .+++++.|-.++||.+.....
T Consensus 232 ~~ilTGG~d~~av~~d~~s~q~l~~~~Gh--------~kki~~v~~~~~~~--------~v~~aSad~~i~vws~~~~s~ 295 (506)
T KOG0289|consen 232 SKILTGGEDKTAVLFDKPSNQILATLKGH--------TKKITSVKFHKDLD--------TVITASADEIIRVWSVPLSSE 295 (506)
T ss_pred CcceecCCCCceEEEecchhhhhhhccCc--------ceEEEEEEeccchh--------heeecCCcceEEeeccccccC
Confidence 46999999999999999999999999984 46677777776666 899999999999999765431
Q ss_pred ccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecC
Q 019405 146 SAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID 225 (341)
Q Consensus 146 ~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 225 (341)
.... ..|.++|+.+..+|.|.||++++.|++..+.|++++..+........ ...+++.+| +|
T Consensus 296 --------~~~~-~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s-------~v~~ts~~f--Hp 357 (506)
T KOG0289|consen 296 --------PTSS-RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETS-------DVEYTSAAF--HP 357 (506)
T ss_pred --------cccc-ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccc-------cceeEEeeE--cC
Confidence 1122 24678999999999999999999999999999999988876654321 134889999 89
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCcee
Q 019405 226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIR 305 (341)
Q Consensus 226 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~ 305 (341)
||.+|.+|..|+.|+|||+..+.. +..|.+|.++|..++|+.+|-+|++++.|+.|++||++..+...++.-....++.
T Consensus 358 DgLifgtgt~d~~vkiwdlks~~~-~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~ 436 (506)
T KOG0289|consen 358 DGLIFGTGTPDGVVKIWDLKSQTN-VAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVN 436 (506)
T ss_pred CceEEeccCCCceEEEEEcCCccc-cccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccce
Confidence 999999999999999999998774 8999999999999999999999999999999999999988888777765455799
Q ss_pred EEEecCCCCEEEEEeCCCcEEEEEc
Q 019405 306 SIARHPTLPIIASCGLDSYLRFWDI 330 (341)
Q Consensus 306 ~~~~~~~~~~l~s~~~dg~v~iwd~ 330 (341)
++.|.+.|.+|+.++.|=.|++++-
T Consensus 437 s~~fD~SGt~L~~~g~~l~Vy~~~k 461 (506)
T KOG0289|consen 437 SLSFDQSGTYLGIAGSDLQVYICKK 461 (506)
T ss_pred eEEEcCCCCeEEeecceeEEEEEec
Confidence 9999999999999988877777763
No 79
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=1.1e-27 Score=192.19 Aligned_cols=261 Identities=16% Similarity=0.175 Sum_probs=190.7
Q ss_pred CCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeec-cC-CCCCCCCCCceeeEeeeeccccccccccce
Q 019405 48 PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN-AG-DSGAQPEDDGIVGLHLFKRQREESSSRSRT 125 (341)
Q Consensus 48 ~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (341)
|.+.|+-+..-|-.. .++|+++..+.|.|||..+-.......+ .. .....+|.+.-.++.|..... +.
T Consensus 123 h~gEVnRaRymPQnp---~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~-------g~ 192 (422)
T KOG0264|consen 123 HDGEVNRARYMPQNP---NIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQE-------GT 192 (422)
T ss_pred CCccchhhhhCCCCC---cEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccc-------ee
Confidence 556665555444333 3678888999999999865322221110 00 000112334344466655443 29
Q ss_pred eEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecC-CCCEEEEeeCCCeEEEEECCC--CceeeecCC
Q 019405 126 LLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDK--CEKIWTAKP 202 (341)
Q Consensus 126 l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~i~d~~~--~~~~~~~~~ 202 (341)
+++++.|+.+.+|++....... ... ..+.+...|...|..++|++ +..++++++.|+.+.|||+++ .+.......
T Consensus 193 Lls~~~d~~i~lwdi~~~~~~~-~~~-~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~a 270 (422)
T KOG0264|consen 193 LLSGSDDHTICLWDINAESKED-KVV-DPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKA 270 (422)
T ss_pred EeeccCCCcEEEEeccccccCC-ccc-cceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccc
Confidence 9999999999999997665421 111 22344446788999999998 457888999999999999995 333333333
Q ss_pred CCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCC-ceEEEEeCCCC
Q 019405 203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGD 281 (341)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~ 281 (341)
|...+.|++|. +-++..||+|+.|++|++||+|+.+.++.++.+|+..|..+.|+|.. ..|++++.|+.
T Consensus 271 ---------h~~~vn~~~fn-p~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~r 340 (422)
T KOG0264|consen 271 ---------HSAEVNCVAFN-PFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRR 340 (422)
T ss_pred ---------cCCceeEEEeC-CCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCc
Confidence 45779999995 34677899999999999999999888899999999999999999965 67888999999
Q ss_pred EEEEECCCC--------------eEEeEEeccccCceeEEEecCCCC-EEEEEeCCCcEEEEEcC
Q 019405 282 LASVDIRTG--------------KLLGCFIGKCSGSIRSIARHPTLP-IIASCGLDSYLRFWDIK 331 (341)
Q Consensus 282 i~iwd~~~~--------------~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~dg~v~iwd~~ 331 (341)
+.+||+..- +++..-.|| ...|..+.|+|+.+ .+++.+.|+.+.||++.
T Consensus 341 l~vWDls~ig~eq~~eda~dgppEllF~HgGH-~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 341 LNVWDLSRIGEEQSPEDAEDGPPELLFIHGGH-TAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred EEEEeccccccccChhhhccCCcceeEEecCc-ccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 999998631 334555566 89999999999988 57888999999999986
No 80
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=1.1e-27 Score=207.39 Aligned_cols=241 Identities=15% Similarity=0.232 Sum_probs=203.3
Q ss_pred CCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchhe-eeccCCCCCCCCCCceeeEeeeeccccccccccceeE
Q 019405 49 HSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVA-ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL 127 (341)
Q Consensus 49 ~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 127 (341)
...+.+..+. + .++++++.|++|++|+..++..+.. +.+ |.+.+.++++..... .++
T Consensus 208 ~~~~~~~q~~-~-----~~~~~~s~~~tl~~~~~~~~~~i~~~l~G--------H~g~V~~l~~~~~~~--------~lv 265 (537)
T KOG0274|consen 208 DHVVLCLQLH-D-----GFFKSGSDDSTLHLWDLNNGYLILTRLVG--------HFGGVWGLAFPSGGD--------KLV 265 (537)
T ss_pred cchhhhheee-c-----CeEEecCCCceeEEeecccceEEEeeccC--------CCCCceeEEEecCCC--------EEE
Confidence 4444444444 2 2599999999999999999888777 766 557888888876444 999
Q ss_pred EEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCc
Q 019405 128 TCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNS 207 (341)
Q Consensus 128 ~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~ 207 (341)
+|+.|.++++|++..+. .+.++. .|...+.++... ...+++|+.|.+|++|++.++..+..+.+|.
T Consensus 266 sgS~D~t~rvWd~~sg~--------C~~~l~-gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~--- 331 (537)
T KOG0274|consen 266 SGSTDKTERVWDCSTGE--------CTHSLQ-GHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHT--- 331 (537)
T ss_pred EEecCCcEEeEecCCCc--------EEEEec-CCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEecccc---
Confidence 99999999999976443 666665 366777777764 5678889999999999999999998888754
Q ss_pred cCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEEC
Q 019405 208 LGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDI 287 (341)
Q Consensus 208 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~ 287 (341)
.+|.++.. ++.++++|+.|++|++||..+++. +..+.+|..+|.++.+.+. ..+++|+.|+.|++||+
T Consensus 332 ------~~V~~v~~----~~~~lvsgs~d~~v~VW~~~~~~c-l~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl 399 (537)
T KOG0274|consen 332 ------GPVNCVQL----DEPLLVSGSYDGTVKVWDPRTGKC-LKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDL 399 (537)
T ss_pred ------ccEEEEEe----cCCEEEEEecCceEEEEEhhhcee-eeeecCCcceEEEEEecCc-ceEEeeeeccceEeecC
Confidence 67999998 588999999999999999998775 9999999999999988765 79999999999999999
Q ss_pred CCC-eEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeeec
Q 019405 288 RTG-KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVC 340 (341)
Q Consensus 288 ~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 340 (341)
++. +++..+.+| ..-+..+.+ .+++|++++.|+.|++||..+++++++++
T Consensus 400 ~~~~~c~~tl~~h-~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~ 450 (537)
T KOG0274|consen 400 RTKRKCIHTLQGH-TSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLE 450 (537)
T ss_pred CchhhhhhhhcCC-ccccccccc--ccceeEeccccccEEEeecccCceeeeec
Confidence 999 999999998 777765554 67899999999999999999999998875
No 81
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=2.8e-26 Score=199.39 Aligned_cols=235 Identities=13% Similarity=0.079 Sum_probs=173.5
Q ss_pred EccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccC
Q 019405 71 ARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESS 150 (341)
Q Consensus 71 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~ 150 (341)
|+.++.|++|+......+..+.+ |.+.+.++.|.+.... .|++++.|+.+++|++..........
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~g--------H~~~V~~lafsP~~~~-------lLASgS~DgtIrIWDi~t~~~~~~~i 114 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKG--------HTSSILDLQFNPCFSE-------ILASGSEDLTIRVWEIPHNDESVKEI 114 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcC--------CCCCEEEEEEcCCCCC-------EEEEEeCCCeEEEEECCCCCcccccc
Confidence 56788999999876655555554 5578999988765332 89999999999999986432100000
Q ss_pred CceEEEEEeecCCceEEEEecCCCCE-EEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCE
Q 019405 151 CSTVKSWNVCASGTIAFSKVDISEKF-SLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRK 229 (341)
Q Consensus 151 ~~~v~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 229 (341)
...+..+. .|...|.+++|+|++.. +++++.|++|++||+++++....+..+ ..|.+++| ++++.+
T Consensus 115 ~~p~~~L~-gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~----------~~V~Slsw--spdG~l 181 (568)
T PTZ00420 115 KDPQCILK-GHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMP----------KKLSSLKW--NIKGNL 181 (568)
T ss_pred ccceEEee-cCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecC----------CcEEEEEE--CCCCCE
Confidence 11222333 46788999999998875 578999999999999998876665421 44899999 899999
Q ss_pred EEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEE-----EEEcCCCceEEEEeCCC----CEEEEECCC-CeEEeEEecc
Q 019405 230 FVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKA-----VAEEPDSFNIYIGNGSG----DLASVDIRT-GKLLGCFIGK 299 (341)
Q Consensus 230 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~-----~~~~~~~~~l~~g~~dg----~i~iwd~~~-~~~~~~~~~~ 299 (341)
|++++.|+.|++||+++++. +..+.+|.+.+.. ..|++++.+|++++.|+ .|+|||+++ .+++..+..+
T Consensus 182 Lat~s~D~~IrIwD~Rsg~~-i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld 260 (568)
T PTZ00420 182 LSGTCVGKHMHIIDPRKQEI-ASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSID 260 (568)
T ss_pred EEEEecCCEEEEEECCCCcE-EEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEec
Confidence 99999999999999998764 7888889876543 23468888999877764 699999995 5566555432
Q ss_pred c-cCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCc
Q 019405 300 C-SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ 334 (341)
Q Consensus 300 ~-~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 334 (341)
. .+.+.-....+++.++++|+.|+.|++|++..+.
T Consensus 261 ~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 261 NASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred CCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc
Confidence 1 2333333345568899999999999999998764
No 82
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.6e-27 Score=191.48 Aligned_cols=250 Identities=16% Similarity=0.250 Sum_probs=194.1
Q ss_pred CCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeE
Q 019405 48 PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL 127 (341)
Q Consensus 48 ~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 127 (341)
...+|..++||+...-+ +|+++ .-.+.||+..+....+++..+. +.+.+..+-.... .++
T Consensus 25 e~~~vssl~fsp~~P~d---~aVt~-S~rvqly~~~~~~~~k~~srFk--------~~v~s~~fR~DG~--------Lla 84 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYD---FAVTS-SVRVQLYSSVTRSVRKTFSRFK--------DVVYSVDFRSDGR--------LLA 84 (487)
T ss_pred ccCcceeEecCCCCCCc---eEEec-ccEEEEEecchhhhhhhHHhhc--------cceeEEEeecCCe--------EEE
Confidence 45778889998865532 55554 4789999998887777776541 3344444443433 888
Q ss_pred EEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC-CEEEEeeCCCeEEEEECCCCceeeecCCCCCC
Q 019405 128 TCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKN 206 (341)
Q Consensus 128 ~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~ 206 (341)
+|...|.++|+|+.... .++.++ .|..++..+.|+|++ ..+++|+.|+.+++||+.+......+..|+
T Consensus 85 aGD~sG~V~vfD~k~r~--------iLR~~~-ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~ht-- 153 (487)
T KOG0310|consen 85 AGDESGHVKVFDMKSRV--------ILRQLY-AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHT-- 153 (487)
T ss_pred ccCCcCcEEEeccccHH--------HHHHHh-hccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCc--
Confidence 88899999999954311 344444 367899999999965 567788899999999999988755666654
Q ss_pred ccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEE
Q 019405 207 SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVD 286 (341)
Q Consensus 207 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd 286 (341)
.+|.|.+|. +.++..+++|+.||.|++||.+.....+..+. |..+|-.+.+-|.|..|++++. +.+++||
T Consensus 154 -------DYVR~g~~~-~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgG-n~vkVWD 223 (487)
T KOG0310|consen 154 -------DYVRCGDIS-PANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAGG-NSVKVWD 223 (487)
T ss_pred -------ceeEeeccc-cCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcCC-CeEEEEE
Confidence 889999995 34556899999999999999998644466665 8899999999999999988764 5899999
Q ss_pred CCCC-eEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 287 IRTG-KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 287 ~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
+-+| +++..+..| ...|+|+++..++..|++++.|+.|++||+.+.+.+..+
T Consensus 224 l~~G~qll~~~~~H-~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~ 276 (487)
T KOG0310|consen 224 LTTGGQLLTSMFNH-NKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSW 276 (487)
T ss_pred ecCCceehhhhhcc-cceEEEEEeecCCceEeecccccceEEEEccceEEEEee
Confidence 9955 555555556 889999999999999999999999999998888877654
No 83
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.7e-27 Score=182.10 Aligned_cols=265 Identities=16% Similarity=0.186 Sum_probs=210.8
Q ss_pred ceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccc
Q 019405 40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES 119 (341)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (341)
+++..|.+|...+-.++..... +.+.+++.|.+-+||.+++++++.++.+| .+.+.++.+.+...
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tq----pi~gtASADhTA~iWs~Esg~CL~~Y~GH--------~GSVNsikfh~s~~--- 203 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQ----PICGTASADHTARIWSLESGACLATYTGH--------TGSVNSIKFHNSGL--- 203 (481)
T ss_pred eehhhhcccccceeeehhhcCC----cceeecccccceeEEeeccccceeeeccc--------ccceeeEEeccccc---
Confidence 4556677888888777644322 37999999999999999999999999984 58888998888776
Q ss_pred ccccceeEEEcccceeEEEEeeec----cc-c----------------------cccCC-ceEEEE--E-eecCCceEEE
Q 019405 120 SSRSRTLLTCTTKGKASMRSIEVT----KV-S----------------------AESSC-STVKSW--N-VCASGTIAFS 168 (341)
Q Consensus 120 ~~~~~~l~~~~~~g~~~i~~~~~~----~~-~----------------------~~~~~-~~v~~~--~-~~~~~~i~~~ 168 (341)
.+++++.|++..||..... .. + +...| .++++- . ..|...|.+.
T Consensus 204 -----L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~ 278 (481)
T KOG0300|consen 204 -----LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSAC 278 (481)
T ss_pred -----eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEeh
Confidence 8999999999999973211 00 0 00111 122221 1 1245677888
Q ss_pred EecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCC
Q 019405 169 KVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR 248 (341)
Q Consensus 169 ~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 248 (341)
.|-..++.+++++.|.+-.+||+++++.+..+.+|.. ..+.++- +|..+++++++.|-+.++||++..-
T Consensus 279 dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~---------ELtHcst--HptQrLVvTsSrDtTFRLWDFReaI 347 (481)
T KOG0300|consen 279 DWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDS---------ELTHCST--HPTQRLVVTSSRDTTFRLWDFREAI 347 (481)
T ss_pred hhhcCcceeeeeeccccceeeeeccCceeccccCcch---------hcccccc--CCcceEEEEeccCceeEeccchhhc
Confidence 8888999999999999999999999999999888763 3555566 7889999999999999999999765
Q ss_pred ceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCe-EEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEE
Q 019405 249 RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK-LLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRF 327 (341)
Q Consensus 249 ~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~i 327 (341)
..+..|++|...|+++.|..+. .+++|+.|.+|++||+++.+ ++.++.. ..+++.++.+..++.++.--.+..|++
T Consensus 348 ~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIRt--dS~~NRvavs~g~~iIAiPhDNRqvRl 424 (481)
T KOG0300|consen 348 QSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIRT--DSPANRVAVSKGHPIIAIPHDNRQVRL 424 (481)
T ss_pred ceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeeec--CCccceeEeecCCceEEeccCCceEEE
Confidence 6688999999999999998765 68899999999999999764 5677765 679999999999999999999999999
Q ss_pred EEcCCCceeeee
Q 019405 328 WDIKTRQLLSAV 339 (341)
Q Consensus 328 wd~~~~~~~~~~ 339 (341)
||++ |..+.++
T Consensus 425 fDln-G~RlaRl 435 (481)
T KOG0300|consen 425 FDLN-GNRLARL 435 (481)
T ss_pred EecC-CCccccC
Confidence 9997 5555544
No 84
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=7.5e-27 Score=178.16 Aligned_cols=250 Identities=19% Similarity=0.196 Sum_probs=193.8
Q ss_pred CCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCC-CcchheeeccCCCCCCCCCCceeeEeeeeccccccccccce
Q 019405 47 DPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN-GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT 125 (341)
Q Consensus 47 ~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (341)
..+..|..++||+... .+++.++.||+||+|+++. |....+... .+.+++.+++|.+... .
T Consensus 25 pP~DsIS~l~FSP~~~---~~~~A~SWD~tVR~wevq~~g~~~~ka~~-------~~~~PvL~v~Wsddgs--------k 86 (347)
T KOG0647|consen 25 PPEDSISALAFSPQAD---NLLAAGSWDGTVRIWEVQNSGQLVPKAQQ-------SHDGPVLDVCWSDDGS--------K 86 (347)
T ss_pred CcccchheeEeccccC---ceEEecccCCceEEEEEecCCcccchhhh-------ccCCCeEEEEEccCCc--------e
Confidence 4678899999999333 3677999999999999987 444443222 3678999999988776 8
Q ss_pred eEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCC--EEEEeeCCCeEEEEECCCCceeeecCCC
Q 019405 126 LLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK--FSLFGGKGVEVNVWDLDKCEKIWTAKPP 203 (341)
Q Consensus 126 l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~~ 203 (341)
+++++.|+.+++||+..+ .+.... .|.++|.++.|-+... .|++|+.|.+|+.||.+...++..+..+
T Consensus 87 Vf~g~~Dk~~k~wDL~S~---------Q~~~v~-~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP 156 (347)
T KOG0647|consen 87 VFSGGCDKQAKLWDLASG---------QVSQVA-AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP 156 (347)
T ss_pred EEeeccCCceEEEEccCC---------Ceeeee-ecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc
Confidence 999999999999999654 334443 3678899999876554 8999999999999999998888877765
Q ss_pred CCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEe-cCCCeEEEEEcCCCceEEEEeCCCCE
Q 019405 204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDL 282 (341)
Q Consensus 204 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~g~~dg~i 282 (341)
+.++++.. ...+++++..++.|.+|+++++....+.... -+-.+++++..++....+.|+-+|.+
T Consensus 157 ----------eRvYa~Dv----~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv 222 (347)
T KOG0647|consen 157 ----------ERVYAADV----LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRV 222 (347)
T ss_pred ----------ceeeehhc----cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceE
Confidence 44676665 4568899999999999999875432222111 12357889988888888999999999
Q ss_pred EEEECCCC--eEEeEEecccc--------CceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeee
Q 019405 283 ASVDIRTG--KLLGCFIGKCS--------GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSA 338 (341)
Q Consensus 283 ~iwd~~~~--~~~~~~~~~~~--------~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 338 (341)
.|..+..+ +.-..|+.|.. -.|++++|+|.-..|+|++.||+..+||-+....|.+
T Consensus 223 ~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~ 288 (347)
T KOG0647|consen 223 AIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKT 288 (347)
T ss_pred EEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhc
Confidence 99988876 44556666631 2578899999999999999999999999877665554
No 85
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=1.4e-26 Score=198.58 Aligned_cols=290 Identities=17% Similarity=0.201 Sum_probs=217.5
Q ss_pred CCCceee-eecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchhe
Q 019405 12 CPPLRAL-TFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVA 90 (341)
Q Consensus 12 ~~~~~~~-~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 90 (341)
.|.+.++ .|..+|.|.++++..+ +.+.+|+...+.|+.++|.-|++| ++++|+..|.+.+||++..+....
T Consensus 211 sPaLDVVaiG~~~G~ViifNlK~d-----kil~sFk~d~g~VtslSFrtDG~p---~las~~~~G~m~~wDLe~kkl~~v 282 (910)
T KOG1539|consen 211 SPALDVVAIGLENGTVIIFNLKFD-----KILMSFKQDWGRVTSLSFRTDGNP---LLASGRSNGDMAFWDLEKKKLINV 282 (910)
T ss_pred CCcceEEEEeccCceEEEEEcccC-----cEEEEEEccccceeEEEeccCCCe---eEEeccCCceEEEEEcCCCeeeee
Confidence 3444444 5779999999999998 788889666799999999999997 699999999999999998777666
Q ss_pred eeccCCCCCCCCCCceeeEeeeeccc--------------------c-----------c--------cccccceeEEEcc
Q 019405 91 ISNAGDSGAQPEDDGIVGLHLFKRQR--------------------E-----------E--------SSSRSRTLLTCTT 131 (341)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~-----------~--------~~~~~~~l~~~~~ 131 (341)
.... |.+.+....+.+... . . .++....+++++.
T Consensus 283 ~~na-------h~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~ 355 (910)
T KOG1539|consen 283 TRNA-------HYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQ 355 (910)
T ss_pred eecc-------ccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEeccc
Confidence 6531 222222222222222 0 0 0001113444444
Q ss_pred cceeEEEEeeeccc------------------------------------------------------------------
Q 019405 132 KGKASMRSIEVTKV------------------------------------------------------------------ 145 (341)
Q Consensus 132 ~g~~~i~~~~~~~~------------------------------------------------------------------ 145 (341)
|++.+.+++.....
T Consensus 356 Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G 435 (910)
T KOG1539|consen 356 DRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSG 435 (910)
T ss_pred CcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccc
Confidence 44443333211000
Q ss_pred ----------------------------ccccCCceEEEEEeec-------------CCceEEEEecCCCCEEEEeeCCC
Q 019405 146 ----------------------------SAESSCSTVKSWNVCA-------------SGTIAFSKVDISEKFSLFGGKGV 184 (341)
Q Consensus 146 ----------------------------~~~~~~~~v~~~~~~~-------------~~~i~~~~~~~~~~~l~~~~~d~ 184 (341)
.-+...|.|.+|+++. .++|..++.+.-++.+++++.+|
T Consensus 436 ~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~G 515 (910)
T KOG1539|consen 436 RHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADG 515 (910)
T ss_pred cEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcc
Confidence 0123456666776543 36799999999899999999999
Q ss_pred eEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEE
Q 019405 185 EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAV 264 (341)
Q Consensus 185 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~ 264 (341)
.+++||..+...+..+... ..+.++.+ +.....++.+..|-.|+++|..+.+. ++.+.+|...|+++
T Consensus 516 ilkfw~f~~k~l~~~l~l~----------~~~~~iv~--hr~s~l~a~~~ddf~I~vvD~~t~kv-vR~f~gh~nritd~ 582 (910)
T KOG1539|consen 516 ILKFWDFKKKVLKKSLRLG----------SSITGIVY--HRVSDLLAIALDDFSIRVVDVVTRKV-VREFWGHGNRITDM 582 (910)
T ss_pred eEEEEecCCcceeeeeccC----------CCcceeee--eehhhhhhhhcCceeEEEEEchhhhh-hHHhhccccceeee
Confidence 9999999988766655543 33677777 56777899999999999999998664 89999999999999
Q ss_pred EEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCC-CcEEEEEcC
Q 019405 265 AEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLD-SYLRFWDIK 331 (341)
Q Consensus 265 ~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-g~v~iwd~~ 331 (341)
+|||||++|++++.|++|++||+.++.++-.+.. ..++.++.|+|+|.+|||...| .-|++|--+
T Consensus 583 ~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v--d~~~~sls~SPngD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 583 TFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV--DSPCTSLSFSPNGDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred EeCCCCcEEEEeecCCcEEEEeccCcceeeeEec--CCcceeeEECCCCCEEEEEEecCceEEEEEch
Confidence 9999999999999999999999999999988875 6899999999999999999998 579999654
No 86
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.5e-27 Score=187.93 Aligned_cols=256 Identities=17% Similarity=0.150 Sum_probs=204.0
Q ss_pred eeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcc---hheeeccCCCCCCCCCCceeeEeeeecccccc
Q 019405 43 ERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL---RVAISNAGDSGAQPEDDGIVGLHLFKRQREES 119 (341)
Q Consensus 43 ~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (341)
+.+.+|...|-.+.||.++. |||+|+.|.+..||.+..... .+++.+ |..++.-+.|.+.+.
T Consensus 218 qil~~htdEVWfl~FS~nGk----yLAsaSkD~Taiiw~v~~d~~~kl~~tlvg--------h~~~V~yi~wSPDdr--- 282 (519)
T KOG0293|consen 218 QILQDHTDEVWFLQFSHNGK----YLASASKDSTAIIWIVVYDVHFKLKKTLVG--------HSQPVSYIMWSPDDR--- 282 (519)
T ss_pred hhHhhCCCcEEEEEEcCCCe----eEeeccCCceEEEEEEecCcceeeeeeeec--------ccCceEEEEECCCCC---
Confidence 34677999999999998877 999999999999998865433 344444 457787788777776
Q ss_pred ccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeee
Q 019405 120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT 199 (341)
Q Consensus 120 ~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~ 199 (341)
++++++.+..+.+||+..+. ..+.+...++-.+.+++|.|||..+++|+.|+++..||++. .....
T Consensus 283 -----yLlaCg~~e~~~lwDv~tgd--------~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg-n~~~~ 348 (519)
T KOG0293|consen 283 -----YLLACGFDEVLSLWDVDTGD--------LRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG-NILGN 348 (519)
T ss_pred -----eEEecCchHheeeccCCcch--------hhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCc-chhhc
Confidence 99999999999999987655 34445444467889999999999999999999999999964 33333
Q ss_pred cCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCC
Q 019405 200 AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS 279 (341)
Q Consensus 200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d 279 (341)
.+... ...|.+++. .+||+++++.+.|..|++|+..+... +.... ...+|++++.|.+++++++--.+
T Consensus 349 W~gvr--------~~~v~dlai--t~Dgk~vl~v~~d~~i~l~~~e~~~d-r~lis-e~~~its~~iS~d~k~~LvnL~~ 416 (519)
T KOG0293|consen 349 WEGVR--------DPKVHDLAI--TYDGKYVLLVTVDKKIRLYNREARVD-RGLIS-EEQPITSFSISKDGKLALVNLQD 416 (519)
T ss_pred ccccc--------cceeEEEEE--cCCCcEEEEEecccceeeechhhhhh-hcccc-ccCceeEEEEcCCCcEEEEEccc
Confidence 33222 133889999 89999999999999999999887432 33333 44689999999999999999999
Q ss_pred CCEEEEECCCCeEEeEEeccccC-ceeEEEecC-CCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 280 GDLASVDIRTGKLLGCFIGKCSG-SIRSIARHP-TLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 280 g~i~iwd~~~~~~~~~~~~~~~~-~i~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
..+++||++..+.+..+.||..+ -|-.-+|-- +..++++||+|+.|+||+..+|+++.++
T Consensus 417 qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~L 478 (519)
T KOG0293|consen 417 QEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVL 478 (519)
T ss_pred CeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEee
Confidence 99999999999999999988322 344445644 4479999999999999999999999876
No 87
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.2e-25 Score=169.85 Aligned_cols=272 Identities=14% Similarity=0.163 Sum_probs=212.1
Q ss_pred CceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEcc--CCeEEEeeCCCCcchhee
Q 019405 14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARK--NGLTDILNPLNGDLRVAI 91 (341)
Q Consensus 14 ~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~ 91 (341)
...+++++.|..+++++..+. +.+.+...+.-.+..+.|..... .++.++. |.+||..++.+.+.++.+
T Consensus 26 G~~litss~dDsl~LYd~~~g-----~~~~ti~skkyG~~~~~Fth~~~----~~i~sStk~d~tIryLsl~dNkylRYF 96 (311)
T KOG1446|consen 26 GLLLITSSEDDSLRLYDSLSG-----KQVKTINSKKYGVDLACFTHHSN----TVIHSSTKEDDTIRYLSLHDNKYLRYF 96 (311)
T ss_pred CCEEEEecCCCeEEEEEcCCC-----ceeeEeecccccccEEEEecCCc----eEEEccCCCCCceEEEEeecCceEEEc
Confidence 356777888888899888876 55556656666777777776555 3555555 889999999999999999
Q ss_pred eccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEec
Q 019405 92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD 171 (341)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~ 171 (341)
.+ |.+.|+.+...+.++ .+++++.|.++++||++..+ ..-.... ..-..++++
T Consensus 97 ~G--------H~~~V~sL~~sP~~d--------~FlS~S~D~tvrLWDlR~~~--------cqg~l~~---~~~pi~AfD 149 (311)
T KOG1446|consen 97 PG--------HKKRVNSLSVSPKDD--------TFLSSSLDKTVRLWDLRVKK--------CQGLLNL---SGRPIAAFD 149 (311)
T ss_pred CC--------CCceEEEEEecCCCC--------eEEecccCCeEEeeEecCCC--------CceEEec---CCCcceeEC
Confidence 88 558899999888887 99999999999999997443 2222222 122367899
Q ss_pred CCCCEEEEeeCCCeEEEEECCCC--ceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCc
Q 019405 172 ISEKFSLFGGKGVEVNVWDLDKC--EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR 249 (341)
Q Consensus 172 ~~~~~l~~~~~d~~v~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 249 (341)
|+|-++|++...+.|++||++.- .+...+..... .....+.+.| +|+|+.++.+...+.+++.|.-++..
T Consensus 150 p~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~------~~~ew~~l~F--S~dGK~iLlsT~~s~~~~lDAf~G~~ 221 (311)
T KOG1446|consen 150 PEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDN------DEAEWTDLEF--SPDGKSILLSTNASFIYLLDAFDGTV 221 (311)
T ss_pred CCCcEEEEecCCCeEEEEEecccCCCCceeEccCCC------CccceeeeEE--cCCCCEEEEEeCCCcEEEEEccCCcE
Confidence 99999999988889999999853 23333322211 1245789999 99999999999999999999998874
Q ss_pred eeEEEEecCCCe---EEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEE
Q 019405 250 PVMSFDFRETPI---KAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLR 326 (341)
Q Consensus 250 ~~~~~~~~~~~v---~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~ 326 (341)
..++..+...- -..+|+||++++++|+.||+|.+|++++++.+..+++.+.+++.++.|+|.-..+++++ ..+.
T Consensus 222 -~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~ 298 (311)
T KOG1446|consen 222 -KSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLV 298 (311)
T ss_pred -eeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEE
Confidence 77777654332 46789999999999999999999999999999999995588999999999987777765 4577
Q ss_pred EEEcCC
Q 019405 327 FWDIKT 332 (341)
Q Consensus 327 iwd~~~ 332 (341)
+|=...
T Consensus 299 fw~p~~ 304 (311)
T KOG1446|consen 299 FWLPDE 304 (311)
T ss_pred EEeccc
Confidence 886543
No 88
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=7.7e-27 Score=197.22 Aligned_cols=287 Identities=15% Similarity=0.129 Sum_probs=218.2
Q ss_pred CCceeeeecCCCCeEEEEEecCccCcc-----------ceee------e--------c-------cCCCCCceeEEEecc
Q 019405 13 PPLRALTFDSLGLIKVIEARGEHGGVP-----------KVVE------R--------W-------GDPHSSNCVLAASID 60 (341)
Q Consensus 13 ~~~~~~~~~~~g~i~~~~~~~~~~g~~-----------~~~~------~--------~-------~~~~~~~~~~~~s~~ 60 (341)
|+..+++|++||+|++|++.....+.. +..+ . | -+....+.+++.|++
T Consensus 391 p~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~ 470 (1080)
T KOG1408|consen 391 PRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPD 470 (1080)
T ss_pred CccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCC
Confidence 556699999999999999886211100 0000 0 0 012234566676655
Q ss_pred CCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEe
Q 019405 61 DSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSI 140 (341)
Q Consensus 61 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~ 140 (341)
+. +||+|..-|+++||++.+.+.+..++. |+.+|.|+.+..+.- ....|++++.|..|+|+|+
T Consensus 471 gq----hLAsGDr~GnlrVy~Lq~l~~~~~~eA--------HesEilcLeyS~p~~-----~~kLLASasrdRlIHV~Dv 533 (1080)
T KOG1408|consen 471 GQ----HLASGDRGGNLRVYDLQELEYTCFMEA--------HESEILCLEYSFPVL-----TNKLLASASRDRLIHVYDV 533 (1080)
T ss_pred cc----eecccCccCceEEEEehhhhhhhheec--------ccceeEEEeecCchh-----hhHhhhhccCCceEEEEec
Confidence 55 999999999999999998888888776 568899998865543 2238999999999999998
Q ss_pred eecccccccCCceEEEEEeecCCceEEEEecCCC--CEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeE
Q 019405 141 EVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE--KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTS 218 (341)
Q Consensus 141 ~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~--~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 218 (341)
..+-. .+...+ .|...|++++|...| ..+++++.|..|.+--.........+..+.... ....++.
T Consensus 534 ~rny~-------l~qtld-~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~----~ktTlYD 601 (1080)
T KOG1408|consen 534 KRNYD-------LVQTLD-GHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTL----SKTTLYD 601 (1080)
T ss_pred ccccc-------hhhhhc-ccccceeEEEEeecCCceEEEeccCchhhheehhccccCceecccccccc----ccceEEE
Confidence 65432 222222 356789999998776 678999999877643332211122222222110 1245888
Q ss_pred EEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEe---cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeE
Q 019405 219 AAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF---RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGC 295 (341)
Q Consensus 219 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~ 295 (341)
++. .|..+++++++.|+.|+|||+.++++ ++.|++ |++....+...|.|.||++.+.|.++.++|..+|+++..
T Consensus 602 m~V--dp~~k~v~t~cQDrnirif~i~sgKq-~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~ 678 (1080)
T KOG1408|consen 602 MAV--DPTSKLVVTVCQDRNIRIFDIESGKQ-VKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQ 678 (1080)
T ss_pred eee--CCCcceEEEEecccceEEEeccccce-eeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhh
Confidence 898 88999999999999999999999886 777875 566778899999999999999999999999999999999
Q ss_pred EeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405 296 FIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (341)
Q Consensus 296 ~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 332 (341)
+.+| ...|+.+.|.+|-++|++.+.||.|.||.+..
T Consensus 679 m~GH-sE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 679 MTGH-SEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred hcCc-chheeeeeecccchhheeecCCceEEEEECch
Confidence 9999 89999999999999999999999999999875
No 89
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=5.7e-29 Score=191.83 Aligned_cols=174 Identities=15% Similarity=0.222 Sum_probs=157.3
Q ss_pred CCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEE
Q 019405 162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL 241 (341)
Q Consensus 162 ~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~i 241 (341)
...+.|..|+|||+++++|+.||-|.+||..+|+....++-.....+.+ +...|.|+.| +.|...+++|+.||.|++
T Consensus 213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMM-md~aVlci~F--SRDsEMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMM-MDDAVLCISF--SRDSEMLASGSQDGKIKV 289 (508)
T ss_pred ccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceee-cccceEEEee--cccHHHhhccCcCCcEEE
Confidence 3567899999999999999999999999999998877666554444333 4577999999 899999999999999999
Q ss_pred EEcCCCCceeEEEE-ecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEe
Q 019405 242 YDTSAQRRPVMSFD-FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG 320 (341)
Q Consensus 242 wd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 320 (341)
|.++++.+ ++.+. .|...|+++.|+.|+..+++++.|.++++--+.+|+++..|++| .+-|+...|.++|..+++++
T Consensus 290 Wri~tG~C-lRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGH-sSyvn~a~ft~dG~~iisaS 367 (508)
T KOG0275|consen 290 WRIETGQC-LRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGH-SSYVNEATFTDDGHHIISAS 367 (508)
T ss_pred EEEecchH-HHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCc-cccccceEEcCCCCeEEEec
Confidence 99999887 66665 79999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred CCCcEEEEEcCCCceeeeec
Q 019405 321 LDSYLRFWDIKTRQLLSAVC 340 (341)
Q Consensus 321 ~dg~v~iwd~~~~~~~~~~~ 340 (341)
.||+|++|+.++++|+.++.
T Consensus 368 sDgtvkvW~~KtteC~~Tfk 387 (508)
T KOG0275|consen 368 SDGTVKVWHGKTTECLSTFK 387 (508)
T ss_pred CCccEEEecCcchhhhhhcc
Confidence 99999999999999998764
No 90
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=4.1e-26 Score=201.11 Aligned_cols=291 Identities=14% Similarity=0.107 Sum_probs=221.6
Q ss_pred ceeeeec--CCCCeEEEEEecCc-------cCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCC
Q 019405 15 LRALTFD--SLGLIKVIEARGEH-------GGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG 85 (341)
Q Consensus 15 ~~~~~~~--~~g~i~~~~~~~~~-------~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~ 85 (341)
.++.+|+ .||.+.+|+...-. .-.++.+-+...|.+.+.|+.|++|++ +||+|+.|+.|.||.....
T Consensus 26 ~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~----~lAsGSDD~~v~iW~~~~~ 101 (942)
T KOG0973|consen 26 VKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGS----YLASGSDDRLVMIWERAEI 101 (942)
T ss_pred eeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCC----eEeeccCcceEEEeeeccc
Confidence 6677888 78888899865421 113455566778999999999998888 9999999999999998731
Q ss_pred cchheeec----cCC-------CCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceE
Q 019405 86 DLRVAISN----AGD-------SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTV 154 (341)
Q Consensus 86 ~~~~~~~~----~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v 154 (341)
.....-+ +.. .....|+..+..+.|-+.+. .+++++.|+++.||+..... .+
T Consensus 102 -~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--------~lvS~s~DnsViiwn~~tF~--------~~ 164 (942)
T KOG0973|consen 102 -GSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--------LLVSVSLDNSVIIWNAKTFE--------LL 164 (942)
T ss_pred -CCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--------EEEEecccceEEEEccccce--------ee
Confidence 0000000 000 00123667788888877655 99999999999999976443 56
Q ss_pred EEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEe
Q 019405 155 KSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT 234 (341)
Q Consensus 155 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 234 (341)
++.+. |...|..+.|+|-|++||+-+.|++|++|++.+-.....+..+..+... ...+..+.| +|||.+|++..
T Consensus 165 ~vl~~-H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~---~T~f~RlSW--SPDG~~las~n 238 (942)
T KOG0973|consen 165 KVLRG-HQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPL---TTFFLRLSW--SPDGHHLASPN 238 (942)
T ss_pred eeeec-ccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCC---cceeeeccc--CCCcCeecchh
Confidence 66664 6788999999999999999999999999997765555555554332221 255888999 99999999864
Q ss_pred C----CCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCC-----Cc------------eEEEEeCCCCEEEEECCCCeEE
Q 019405 235 N----DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPD-----SF------------NIYIGNGSGDLASVDIRTGKLL 293 (341)
Q Consensus 235 ~----d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~------------~l~~g~~dg~i~iwd~~~~~~~ 293 (341)
. -.++.|.+..+.+. -..+-+|..++.+++|+|. .. .+|+|+.|++|.||.....+++
T Consensus 239 A~n~~~~~~~IieR~tWk~-~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl 317 (942)
T KOG0973|consen 239 AVNGGKSTIAIIERGTWKV-DKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPL 317 (942)
T ss_pred hccCCcceeEEEecCCcee-eeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCch
Confidence 3 24688888766554 6778899999999999882 11 6789999999999999888887
Q ss_pred eEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCC
Q 019405 294 GCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR 333 (341)
Q Consensus 294 ~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 333 (341)
.....-....|..++|+|||-.|+.+|.||+|.++.++..
T Consensus 318 ~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 318 FVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred hhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 6655444679999999999999999999999999998764
No 91
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=3.2e-27 Score=187.27 Aligned_cols=251 Identities=14% Similarity=0.243 Sum_probs=201.3
Q ss_pred eccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCc--chheeeccCCCCCCCCCCceeeEeeeecccccccc
Q 019405 44 RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD--LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSS 121 (341)
Q Consensus 44 ~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (341)
.+..|.+.+..+-|-.+.. .|++|+.|..|++|+...++ ...++.+ ..+++..+.+-.++.
T Consensus 170 ~ld~h~gev~~v~~l~~sd----tlatgg~Dr~Ik~W~v~~~k~~~~~tLaG--------s~g~it~~d~d~~~~----- 232 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLRNSD----TLATGGSDRIIKLWNVLGEKSELISTLAG--------SLGNITSIDFDSDNK----- 232 (459)
T ss_pred hhhccccccceeEEccCcc----hhhhcchhhhhhhhhcccchhhhhhhhhc--------cCCCcceeeecCCCc-----
Confidence 4556888999888887744 59999999999999997665 3333333 446788888777666
Q ss_pred ccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecC
Q 019405 122 RSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAK 201 (341)
Q Consensus 122 ~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~ 201 (341)
.+++++.|+..++|+++.... ...... |...|+++.|......+++|+.|.+|++||+....+..++-
T Consensus 233 ---~~iAas~d~~~r~Wnvd~~r~--------~~TLsG-HtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l 300 (459)
T KOG0288|consen 233 ---HVIAASNDKNLRLWNVDSLRL--------RHTLSG-HTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL 300 (459)
T ss_pred ---eEEeecCCCceeeeeccchhh--------hhhhcc-cccceeeehhhccccceeeccccchhhhhhhhhhheecccc
Confidence 899999999999999975542 222232 67889999998777779999999999999999877766544
Q ss_pred CCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCC
Q 019405 202 PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGD 281 (341)
Q Consensus 202 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~ 281 (341)
.. ..+..+.. ....+++|..|++|++||.+.... +.....+. .|+++..++++..|.+.+.|..
T Consensus 301 ~~----------S~cnDI~~----~~~~~~SgH~DkkvRfwD~Rs~~~-~~sv~~gg-~vtSl~ls~~g~~lLsssRDdt 364 (459)
T KOG0288|consen 301 PG----------SQCNDIVC----SISDVISGHFDKKVRFWDIRSADK-TRSVPLGG-RVTSLDLSMDGLELLSSSRDDT 364 (459)
T ss_pred cc----------ccccceEe----cceeeeecccccceEEEeccCCce-eeEeecCc-ceeeEeeccCCeEEeeecCCCc
Confidence 32 22555555 256788999999999999998664 77777664 9999999999999999999999
Q ss_pred EEEEECCCCeEEeEEecc---ccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 282 LASVDIRTGKLLGCFIGK---CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 282 i~iwd~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
+.+.|+++.+....+... .....+.+.|||++.|+++||.||.|+||++.++++...+
T Consensus 365 l~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l 425 (459)
T KOG0288|consen 365 LKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVL 425 (459)
T ss_pred eeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEe
Confidence 999999999888777642 1235888999999999999999999999999999987765
No 92
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.95 E-value=1.9e-25 Score=167.82 Aligned_cols=211 Identities=16% Similarity=0.244 Sum_probs=181.9
Q ss_pred CCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEE
Q 019405 100 QPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLF 179 (341)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~ 179 (341)
.+|+.+++.+.+....+ .|++++.|....+|--..++ .+-.++ .|.+.|+|++++.+.+.+++
T Consensus 7 ~GHERplTqiKyN~eGD--------LlFscaKD~~~~vw~s~nGe--------rlGty~-GHtGavW~~Did~~s~~liT 69 (327)
T KOG0643|consen 7 QGHERPLTQIKYNREGD--------LLFSCAKDSTPTVWYSLNGE--------RLGTYD-GHTGAVWCCDIDWDSKHLIT 69 (327)
T ss_pred ccCccccceEEecCCCc--------EEEEecCCCCceEEEecCCc--------eeeeec-CCCceEEEEEecCCcceeee
Confidence 45788899998887777 99999999999999754333 455565 47889999999999999999
Q ss_pred eeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCC-----CeEEEEEcCCC------C
Q 019405 180 GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-----HQVRLYDTSAQ------R 248 (341)
Q Consensus 180 ~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~------~ 248 (341)
|+.|.++++||+++|+++..++.. ..|..+.| ++++++++....+ +.|.++|++.. +
T Consensus 70 GSAD~t~kLWDv~tGk~la~~k~~----------~~Vk~~~F--~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ 137 (327)
T KOG0643|consen 70 GSADQTAKLWDVETGKQLATWKTN----------SPVKRVDF--SFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSE 137 (327)
T ss_pred ccccceeEEEEcCCCcEEEEeecC----------CeeEEEee--ccCCcEEEEEehhhcCcceEEEEEEccCChhhhccc
Confidence 999999999999999999988865 55899999 8899988876543 67999999842 3
Q ss_pred ceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeE-EeEEeccccCceeEEEecCCCCEEEEEeCCCcEEE
Q 019405 249 RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL-LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRF 327 (341)
Q Consensus 249 ~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~i 327 (341)
.|+..+..+.+.++.+-|+|-++.|++|..||.|.+||+++|+. +..-+.| ...|+.|+++|+..+++++|.|.+-++
T Consensus 138 ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h-~~~Ind~q~s~d~T~FiT~s~Dttakl 216 (327)
T KOG0643|consen 138 EPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEH-SSKINDLQFSRDRTYFITGSKDTTAKL 216 (327)
T ss_pred CceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhh-ccccccccccCCcceEEecccCcccee
Confidence 46788888889999999999999999999999999999999855 5555666 889999999999999999999999999
Q ss_pred EEcCCCceeeeec
Q 019405 328 WDIKTRQLLSAVC 340 (341)
Q Consensus 328 wd~~~~~~~~~~~ 340 (341)
||+.+-++++++.
T Consensus 217 ~D~~tl~v~Kty~ 229 (327)
T KOG0643|consen 217 VDVRTLEVLKTYT 229 (327)
T ss_pred eeccceeeEEEee
Confidence 9999998888763
No 93
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=4.7e-26 Score=183.32 Aligned_cols=269 Identities=17% Similarity=0.195 Sum_probs=199.4
Q ss_pred CCeEEEEEecCccCccceeeeccCC-CCCceeEEEeccCCCCCceEEEEcc-CCeEEEeeCCCCcchheeeccCCCCCCC
Q 019405 24 GLIKVIEARGEHGGVPKVVERWGDP-HSSNCVLAASIDDSQNDPLLAVARK-NGLTDILNPLNGDLRVAISNAGDSGAQP 101 (341)
Q Consensus 24 g~i~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 101 (341)
..+.+|++..+ ..+.+|++. ...-..+. ... .++++++.. ...|.+|.+...........
T Consensus 18 ~~~~~~dl~TG-----t~~~~ykg~~~a~~~sl~-~l~----~~yllsaq~~rp~l~vw~i~k~~~~~q~~v-------- 79 (476)
T KOG0646|consen 18 INCIVWDLRTG-----TSLLQYKGSYLAQAASLT-ALN----NEYLLSAQLKRPLLHVWEILKKDQVVQYIV-------- 79 (476)
T ss_pred cceeEEecCCC-----ceeEEecCcccccchhhh-hhc----hhheeeecccCccccccccCchhhhhhhcc--------
Confidence 45789999886 444466543 11111111 011 135666653 45799999865443331111
Q ss_pred CCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEee
Q 019405 102 EDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG 181 (341)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~ 181 (341)
-.+++.++...+... +++.++..|.+.+|.+..+. .+.+|. .|-..|+|+.|+.|+.+|++|+
T Consensus 80 ~Pg~v~al~s~n~G~--------~l~ag~i~g~lYlWelssG~--------LL~v~~-aHYQ~ITcL~fs~dgs~iiTgs 142 (476)
T KOG0646|consen 80 LPGPVHALASSNLGY--------FLLAGTISGNLYLWELSSGI--------LLNVLS-AHYQSITCLKFSDDGSHIITGS 142 (476)
T ss_pred cccceeeeecCCCce--------EEEeecccCcEEEEEecccc--------HHHHHH-hhccceeEEEEeCCCcEEEecC
Confidence 236788888777665 77777799999999998665 455663 5778999999999999999999
Q ss_pred CCCeEEEEECCC---------CceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeE
Q 019405 182 KGVEVNVWDLDK---------CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM 252 (341)
Q Consensus 182 ~d~~v~i~d~~~---------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 252 (341)
.||.|.+|.+.. -++...+..| .-+|+.+..-+.+...+|++++.|.++++||+..+.. +.
T Consensus 143 kDg~V~vW~l~~lv~a~~~~~~~p~~~f~~H---------tlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~L-Ll 212 (476)
T KOG0646|consen 143 KDGAVLVWLLTDLVSADNDHSVKPLHIFSDH---------TLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVL-LL 212 (476)
T ss_pred CCccEEEEEEEeecccccCCCccceeeeccC---------cceeEEEEecCCCccceEEEecCCceEEEEEecccee-eE
Confidence 999999998743 2233444443 3568888774344567899999999999999999864 55
Q ss_pred EEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCC----------------eEEeEEeccccC--ceeEEEecCCCC
Q 019405 253 SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG----------------KLLGCFIGKCSG--SIRSIARHPTLP 314 (341)
Q Consensus 253 ~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~----------------~~~~~~~~~~~~--~i~~~~~~~~~~ 314 (341)
++. ...++.+++.+|-++.+++|+.+|.|.+.++... ..+..+.+| .+ +|++++.+-||.
T Consensus 213 ti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh-~~~~~ITcLais~Dgt 290 (476)
T KOG0646|consen 213 TIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGH-ENESAITCLAISTDGT 290 (476)
T ss_pred EEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccc-cCCcceeEEEEecCcc
Confidence 554 3468999999999999999999999999886532 345667787 66 999999999999
Q ss_pred EEEEEeCCCcEEEEEcCCCceeeee
Q 019405 315 IIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 315 ~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
.|++|+.||.|+|||+.+.++++++
T Consensus 291 lLlSGd~dg~VcvWdi~S~Q~iRtl 315 (476)
T KOG0646|consen 291 LLLSGDEDGKVCVWDIYSKQCIRTL 315 (476)
T ss_pred EEEeeCCCCCEEEEecchHHHHHHH
Confidence 9999999999999999999998875
No 94
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=9.2e-26 Score=181.37 Aligned_cols=269 Identities=18% Similarity=0.191 Sum_probs=204.0
Q ss_pred ceeeeecCCCCeEEEEEecCcc--Cccce-----------eeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEee
Q 019405 15 LRALTFDSLGLIKVIEARGEHG--GVPKV-----------VERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILN 81 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~~--g~~~~-----------~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~ 81 (341)
-+.++++++|+|..|++..... .+++- ......|...+.+++.|+|++ |||+|+.|..|.||+
T Consensus 155 ~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk----ylatgg~d~~v~Iw~ 230 (479)
T KOG0299|consen 155 KRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK----YLATGGRDRHVQIWD 230 (479)
T ss_pred cceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc----EEEecCCCceEEEec
Confidence 3688999999998888776521 11111 011135777888889888877 999999999999999
Q ss_pred CCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeec
Q 019405 82 PLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA 161 (341)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~ 161 (341)
.++.+.++.+.. |.+.|.++++..... .+.+++.|..+++|+++... .+... ..|
T Consensus 231 ~~t~ehv~~~~g--------hr~~V~~L~fr~gt~--------~lys~s~Drsvkvw~~~~~s--------~vetl-yGH 285 (479)
T KOG0299|consen 231 CDTLEHVKVFKG--------HRGAVSSLAFRKGTS--------ELYSASADRSVKVWSIDQLS--------YVETL-YGH 285 (479)
T ss_pred Ccccchhhcccc--------cccceeeeeeecCcc--------ceeeeecCCceEEEehhHhH--------HHHHH-hCC
Confidence 999999888776 568899999887776 89999999999999986443 22221 235
Q ss_pred CCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEE
Q 019405 162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL 241 (341)
Q Consensus 162 ~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~i 241 (341)
...|..+....-++.+-+|+.|.++++|++....+ ..+..+. +.+.|++|. +...+++|+.||.|.+
T Consensus 286 qd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesq-lifrg~~---------~sidcv~~I---n~~HfvsGSdnG~IaL 352 (479)
T KOG0299|consen 286 QDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQ-LIFRGGE---------GSIDCVAFI---NDEHFVSGSDNGSIAL 352 (479)
T ss_pred ccceeeechhcccceEEeccccceeEEEeccccce-eeeeCCC---------CCeeeEEEe---cccceeeccCCceEEE
Confidence 67788888877777777888999999999954322 2233332 558999995 6678999999999999
Q ss_pred EEcCCCCceeEEEEe-c-----------CCCeEEEEEcCCCceEEEEeCCCCEEEEECCCC----eEEeEEeccccCcee
Q 019405 242 YDTSAQRRPVMSFDF-R-----------ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG----KLLGCFIGKCSGSIR 305 (341)
Q Consensus 242 wd~~~~~~~~~~~~~-~-----------~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~----~~~~~~~~~~~~~i~ 305 (341)
|++.+.+ |+.+... | ..+|++++..|...++++|+.+|.|++|-+..+ +++..+.. .+.|+
T Consensus 353 Ws~~KKk-plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~--~GfVN 429 (479)
T KOG0299|consen 353 WSLLKKK-PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSL--VGFVN 429 (479)
T ss_pred eeecccC-ceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeeccc--ccEEE
Confidence 9998743 5655432 2 238999999999999999999999999998877 45666663 68999
Q ss_pred EEEecCCCCEE-EEEeCCCcEEEE
Q 019405 306 SIARHPTLPII-ASCGLDSYLRFW 328 (341)
Q Consensus 306 ~~~~~~~~~~l-~s~~~dg~v~iw 328 (341)
+++|+++|+.+ +..+....+--|
T Consensus 430 sl~f~~sgk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 430 SLAFSNSGKRIVAGIGKEHRLGRW 453 (479)
T ss_pred EEEEccCCCEEEEeccccccccee
Confidence 99999999954 444555555444
No 95
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=2.8e-25 Score=170.15 Aligned_cols=256 Identities=12% Similarity=0.102 Sum_probs=197.9
Q ss_pred ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 94 (341)
-.+++++-||.+++++.... .+...+ .|..++...+|..+.+ +++|+.||.|+.+|+.++.... +..
T Consensus 26 ~~LLvssWDgslrlYdv~~~-----~l~~~~-~~~~plL~c~F~d~~~-----~~~G~~dg~vr~~Dln~~~~~~-igt- 92 (323)
T KOG1036|consen 26 SDLLVSSWDGSLRLYDVPAN-----SLKLKF-KHGAPLLDCAFADEST-----IVTGGLDGQVRRYDLNTGNEDQ-IGT- 92 (323)
T ss_pred CcEEEEeccCcEEEEeccch-----hhhhhe-ecCCceeeeeccCCce-----EEEeccCceEEEEEecCCccee-ecc-
Confidence 34677788999999998876 343345 5788999888887666 9999999999999998775533 222
Q ss_pred CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC
Q 019405 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (341)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~ 174 (341)
|.+++.|+......+ .+++|+.|+++++||..... .......++.|.++... +
T Consensus 93 -------h~~~i~ci~~~~~~~--------~vIsgsWD~~ik~wD~R~~~----------~~~~~d~~kkVy~~~v~--g 145 (323)
T KOG1036|consen 93 -------HDEGIRCIEYSYEVG--------CVISGSWDKTIKFWDPRNKV----------VVGTFDQGKKVYCMDVS--G 145 (323)
T ss_pred -------CCCceEEEEeeccCC--------eEEEcccCccEEEEeccccc----------cccccccCceEEEEecc--C
Confidence 568899999886666 99999999999999976421 11222334577777764 7
Q ss_pred CEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCC---cee
Q 019405 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR---RPV 251 (341)
Q Consensus 175 ~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---~~~ 251 (341)
+.|++|+.+..+.+||+++...........- .-.+.|+++. |++.=+++++-||.|.+=.+.... ...
T Consensus 146 ~~LvVg~~~r~v~iyDLRn~~~~~q~reS~l-------kyqtR~v~~~--pn~eGy~~sSieGRVavE~~d~s~~~~skk 216 (323)
T KOG1036|consen 146 NRLVVGTSDRKVLIYDLRNLDEPFQRRESSL-------KYQTRCVALV--PNGEGYVVSSIEGRVAVEYFDDSEEAQSKK 216 (323)
T ss_pred CEEEEeecCceEEEEEcccccchhhhccccc-------eeEEEEEEEe--cCCCceEEEeecceEEEEccCCchHHhhhc
Confidence 7899999999999999998765543332221 1458899994 566667888999999887666541 113
Q ss_pred EEEEecC---------CCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEe
Q 019405 252 MSFDFRE---------TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG 320 (341)
Q Consensus 252 ~~~~~~~---------~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 320 (341)
..|+.|. .+|++++|+|-...|++|+.||.|.+||+.+.+.+..+... ...|.+++|+.+|..||.++
T Consensus 217 yaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~-~~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 217 YAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY-ETSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred eeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC-CCceEEEEeccCCCeEEEEe
Confidence 4555553 37999999999889999999999999999999999999876 78899999999999999987
No 96
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.95 E-value=4.3e-24 Score=177.74 Aligned_cols=271 Identities=13% Similarity=0.143 Sum_probs=191.1
Q ss_pred eeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceE-EEEccCCeEEEeeCCCCcchheeeccC
Q 019405 17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLL-AVARKNGLTDILNPLNGDLRVAISNAG 95 (341)
Q Consensus 17 ~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~ 95 (341)
+++.+.||.+++|++... +.+..+..+.. +..+++++++. .+ ++++.++.|++||..+++.+..+..+
T Consensus 4 ~~s~~~d~~v~~~d~~t~-----~~~~~~~~~~~-~~~l~~~~dg~----~l~~~~~~~~~v~~~d~~~~~~~~~~~~~- 72 (300)
T TIGR03866 4 YVSNEKDNTISVIDTATL-----EVTRTFPVGQR-PRGITLSKDGK----LLYVCASDSDTIQVIDLATGEVIGTLPSG- 72 (300)
T ss_pred EEEecCCCEEEEEECCCC-----ceEEEEECCCC-CCceEECCCCC----EEEEEECCCCeEEEEECCCCcEEEeccCC-
Confidence 567889999999998765 45556654433 45677776654 55 56778999999999988776555432
Q ss_pred CCCCCCCCCceeeEeeeecccccccccccee-EEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC
Q 019405 96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTL-LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (341)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~ 174 (341)
.....+.+.+... .+ +++..++.+.+|++.... .+..+. ....+..++++|++
T Consensus 73 --------~~~~~~~~~~~g~--------~l~~~~~~~~~l~~~d~~~~~--------~~~~~~--~~~~~~~~~~~~dg 126 (300)
T TIGR03866 73 --------PDPELFALHPNGK--------ILYIANEDDNLVTVIDIETRK--------VLAEIP--VGVEPEGMAVSPDG 126 (300)
T ss_pred --------CCccEEEECCCCC--------EEEEEcCCCCeEEEEECCCCe--------EEeEee--CCCCcceEEECCCC
Confidence 1223344443333 44 455668999999986432 333332 23456789999999
Q ss_pred CEEEEeeCCC-eEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEE-eCCCeEEEEEcCCCCceeE
Q 019405 175 KFSLFGGKGV-EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG-TNDHQVRLYDTSAQRRPVM 252 (341)
Q Consensus 175 ~~l~~~~~d~-~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~ 252 (341)
++++++..++ .+.+||.++++........ ....++.| ++++.+|+++ ..++.|++||+.+++. +.
T Consensus 127 ~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~----------~~~~~~~~--s~dg~~l~~~~~~~~~v~i~d~~~~~~-~~ 193 (300)
T TIGR03866 127 KIVVNTSETTNMAHFIDTKTYEIVDNVLVD----------QRPRFAEF--TADGKELWVSSEIGGTVSVIDVATRKV-IK 193 (300)
T ss_pred CEEEEEecCCCeEEEEeCCCCeEEEEEEcC----------CCccEEEE--CCCCCEEEEEcCCCCEEEEEEcCccee-ee
Confidence 9999888764 5778899887665543221 12456788 8899888654 4689999999998654 44
Q ss_pred EEEecC-----C--CeEEEEEcCCCceEEEE-eCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEE-eCCC
Q 019405 253 SFDFRE-----T--PIKAVAEEPDSFNIYIG-NGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASC-GLDS 323 (341)
Q Consensus 253 ~~~~~~-----~--~v~~~~~~~~~~~l~~g-~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~~dg 323 (341)
.+..+. . ....++|+|++++++++ ..++.+.+||+++++.+..+.. ...+.+++|+|++++|+++ +.++
T Consensus 194 ~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~--~~~~~~~~~~~~g~~l~~~~~~~~ 271 (300)
T TIGR03866 194 KITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLV--GQRVWQLAFTPDEKYLLTTNGVSN 271 (300)
T ss_pred eeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEe--CCCcceEEECCCCCEEEEEcCCCC
Confidence 444321 1 23468899999886554 4567899999999888766542 4578999999999998876 4689
Q ss_pred cEEEEEcCCCceeeee
Q 019405 324 YLRFWDIKTRQLLSAV 339 (341)
Q Consensus 324 ~v~iwd~~~~~~~~~~ 339 (341)
.|++||+++++++.++
T Consensus 272 ~i~v~d~~~~~~~~~~ 287 (300)
T TIGR03866 272 DVSVIDVAALKVIKSI 287 (300)
T ss_pred eEEEEECCCCcEEEEE
Confidence 9999999999988776
No 97
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.3e-25 Score=180.48 Aligned_cols=256 Identities=20% Similarity=0.177 Sum_probs=208.9
Q ss_pred eeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchh-eeec------cC-CCCCC--CCCCceeeEeee
Q 019405 43 ERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRV-AISN------AG-DSGAQ--PEDDGIVGLHLF 112 (341)
Q Consensus 43 ~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~-~~~~------~~-~~~~~--~~~~~~~~~~~~ 112 (341)
..++.|..++++++++++.+ +.++++.||+|.=|++.+++... .++. |. +...+ .|.+.+.+++..
T Consensus 136 ~~~~~H~~s~~~vals~d~~----~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS 211 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDK----RVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVS 211 (479)
T ss_pred eeeccccCcceEEEeecccc----ceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEc
Confidence 45778999999999999888 89999999999999999887542 1111 11 11112 567888888888
Q ss_pred eccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECC
Q 019405 113 KRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLD 192 (341)
Q Consensus 113 ~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~ 192 (341)
+... +|+++..|..+.||+.+..+ .++.|. .|.+.|.+++|-.....+++++.|..|++|+++
T Consensus 212 ~Dgk--------ylatgg~d~~v~Iw~~~t~e--------hv~~~~-ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~ 274 (479)
T KOG0299|consen 212 SDGK--------YLATGGRDRHVQIWDCDTLE--------HVKVFK-GHRGAVSSLAFRKGTSELYSASADRSVKVWSID 274 (479)
T ss_pred CCCc--------EEEecCCCceEEEecCcccc--------hhhccc-ccccceeeeeeecCccceeeeecCCceEEEehh
Confidence 8777 99999999999999987554 555555 478899999999888899999999999999999
Q ss_pred CCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCce
Q 019405 193 KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFN 272 (341)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 272 (341)
....+..+.+|. ..|.++.. ..-++.+-+|+.|+++++|++.... ...+.++...+-|++|-.+ ..
T Consensus 275 ~~s~vetlyGHq---------d~v~~Ida--L~reR~vtVGgrDrT~rlwKi~ees--qlifrg~~~sidcv~~In~-~H 340 (479)
T KOG0299|consen 275 QLSYVETLYGHQ---------DGVLGIDA--LSRERCVTVGGRDRTVRLWKIPEES--QLIFRGGEGSIDCVAFIND-EH 340 (479)
T ss_pred HhHHHHHHhCCc---------cceeeech--hcccceEEeccccceeEEEeccccc--eeeeeCCCCCeeeEEEecc-cc
Confidence 888888887764 55777777 4456667777799999999996533 5567888889999999654 47
Q ss_pred EEEEeCCCCEEEEECCCCeEEeEEeccc-----------cCceeEEEecCCCCEEEEEeCCCcEEEEEcCCC
Q 019405 273 IYIGNGSGDLASVDIRTGKLLGCFIGKC-----------SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR 333 (341)
Q Consensus 273 l~~g~~dg~i~iwd~~~~~~~~~~~~~~-----------~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 333 (341)
+++|+.+|.|.+|++...+++.+.+..| ..+|++++..|...++++|+.+|.|++|.+..|
T Consensus 341 fvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 341 FVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred eeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 8999999999999999998887765322 128999999999999999999999999999987
No 98
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=2.4e-25 Score=170.49 Aligned_cols=246 Identities=16% Similarity=0.181 Sum_probs=191.3
Q ss_pred CCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeE
Q 019405 48 PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL 127 (341)
Q Consensus 48 ~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 127 (341)
....+..+.|++... .|++++.||.+++|+.........+. +..++.+.++.+ .. .++
T Consensus 12 P~d~IS~v~f~~~~~----~LLvssWDgslrlYdv~~~~l~~~~~---------~~~plL~c~F~d-~~--------~~~ 69 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSS----DLLVSSWDGSLRLYDVPANSLKLKFK---------HGAPLLDCAFAD-ES--------TIV 69 (323)
T ss_pred ChhceeeEEEcCcCC----cEEEEeccCcEEEEeccchhhhhhee---------cCCceeeeeccC-Cc--------eEE
Confidence 456678888884444 68888899999999998876555554 347788777766 33 799
Q ss_pred EEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCc
Q 019405 128 TCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNS 207 (341)
Q Consensus 128 ~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~ 207 (341)
+++.||.++.+|++..+. .. -..|...|.|+...+....+++|+.|++|++||.++......+...
T Consensus 70 ~G~~dg~vr~~Dln~~~~--------~~--igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~---- 135 (323)
T KOG1036|consen 70 TGGLDGQVRRYDLNTGNE--------DQ--IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQG---- 135 (323)
T ss_pred EeccCceEEEEEecCCcc--------ee--eccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccC----
Confidence 999999999999976542 11 1246789999999998899999999999999999875554444433
Q ss_pred cCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEE-ecCCCeEEEEEcCCCceEEEEeCCCCEEEEE
Q 019405 208 LGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD-FRETPIKAVAEEPDSFNIYIGNGSGDLASVD 286 (341)
Q Consensus 208 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd 286 (341)
..|.++.. .++.|++|+.|..+.+||+++...+.+.-. .-+..++++++-|++.=.++++-||.|.+=.
T Consensus 136 ------kkVy~~~v----~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~ 205 (323)
T KOG1036|consen 136 ------KKVYCMDV----SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEY 205 (323)
T ss_pred ------ceEEEEec----cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEc
Confidence 34888776 688999999999999999998765442221 1235689999999888899999999988765
Q ss_pred CCCC----eEEeEEeccc--------cCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 287 IRTG----KLLGCFIGKC--------SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 287 ~~~~----~~~~~~~~~~--------~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
+... +....|+.|. --+|++|+|+|-...|+||+.||.|.+||+.+.+.+..+
T Consensus 206 ~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~ 270 (323)
T KOG1036|consen 206 FDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQL 270 (323)
T ss_pred cCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhc
Confidence 5544 4456666662 137999999999999999999999999999998877654
No 99
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=2.2e-25 Score=187.68 Aligned_cols=265 Identities=13% Similarity=0.103 Sum_probs=207.4
Q ss_pred CCceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCcee-EEEeccCCCCCceEEEEccCCeEEEeeCCCCcchhee
Q 019405 13 PPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCV-LAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAI 91 (341)
Q Consensus 13 ~~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 91 (341)
++..+++++.||++++|.-..+ .+...+.+.+|.+-+.. +++-. .++-.|++|+.|.+|.+|......++..+
T Consensus 24 ~~~~i~s~sRd~t~~vw~~~~~---~~l~~~~~~~~~g~i~~~i~y~e---~~~~~l~~g~~D~~i~v~~~~~~~P~~~L 97 (745)
T KOG0301|consen 24 DGVCIISGSRDGTVKVWAKKGK---QYLETHAFEGPKGFIANSICYAE---SDKGRLVVGGMDTTIIVFKLSQAEPLYTL 97 (745)
T ss_pred CCeEEeecCCCCceeeeeccCc---ccccceecccCcceeeccceecc---ccCcceEeecccceEEEEecCCCCchhhh
Confidence 3456889999999999987665 12222345556555554 44443 22235999999999999999999999999
Q ss_pred eccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEec
Q 019405 92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD 171 (341)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~ 171 (341)
.+| ...+.++..... . .+++++.|.++++|.+.. ....+. .|...|+.++.-
T Consensus 98 kgH--------~snVC~ls~~~~-~--------~~iSgSWD~TakvW~~~~----------l~~~l~-gH~asVWAv~~l 149 (745)
T KOG0301|consen 98 KGH--------KSNVCSLSIGED-G--------TLISGSWDSTAKVWRIGE----------LVYSLQ-GHTASVWAVASL 149 (745)
T ss_pred hcc--------ccceeeeecCCc-C--------ceEecccccceEEecchh----------hhcccC-Ccchheeeeeec
Confidence 985 466666665432 1 689999999999998643 223344 477889999888
Q ss_pred CCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCcee
Q 019405 172 ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPV 251 (341)
Q Consensus 172 ~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 251 (341)
|++ .+++|+.|.+|++|.- ++.+..+.+|. ..|+.+++. +...+++++.||.|++|++. ++. +
T Consensus 150 ~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHt---------D~VRgL~vl---~~~~flScsNDg~Ir~w~~~-ge~-l 212 (745)
T KOG0301|consen 150 PEN-TYVTGSADKTIKLWKG--GTLLKTFSGHT---------DCVRGLAVL---DDSHFLSCSNDGSIRLWDLD-GEV-L 212 (745)
T ss_pred CCC-cEEeccCcceeeeccC--Cchhhhhccch---------hheeeeEEe---cCCCeEeecCCceEEEEecc-Cce-e
Confidence 877 8899999999999986 66777777754 679999995 34578999999999999995 465 8
Q ss_pred EEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcC
Q 019405 252 MSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331 (341)
Q Consensus 252 ~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~ 331 (341)
..+.+|+.-+.++...+++..+++++.|++++||+.. ++.+.+.-+ ...|+++.+-++|. +++|+.||.||||...
T Consensus 213 ~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lP-ttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 213 LEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLP-TTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred eeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecC-ccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence 8899999999999988888899999999999999986 777777655 66899999988885 5678899999999876
Q ss_pred C
Q 019405 332 T 332 (341)
Q Consensus 332 ~ 332 (341)
.
T Consensus 289 k 289 (745)
T KOG0301|consen 289 K 289 (745)
T ss_pred c
Confidence 4
No 100
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=8.1e-26 Score=167.66 Aligned_cols=241 Identities=15% Similarity=0.140 Sum_probs=179.7
Q ss_pred ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 94 (341)
.|+.+++.|++||++..... +-.+++.++.+|.+++.-++|.. ...|.+||+++.||+|.||.-++++..+....
T Consensus 24 krlATcsSD~tVkIf~v~~n--~~s~ll~~L~Gh~GPVwqv~wah--Pk~G~iLAScsYDgkVIiWke~~g~w~k~~e~- 98 (299)
T KOG1332|consen 24 KRLATCSSDGTVKIFEVRNN--GQSKLLAELTGHSGPVWKVAWAH--PKFGTILASCSYDGKVIIWKEENGRWTKAYEH- 98 (299)
T ss_pred ceeeeecCCccEEEEEEcCC--CCceeeeEecCCCCCeeEEeecc--cccCcEeeEeecCceEEEEecCCCchhhhhhh-
Confidence 58999999999999999987 33367789999999999888774 23467999999999999999887754332221
Q ss_pred CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCC-
Q 019405 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS- 173 (341)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~- 173 (341)
..|...|.+++|.|.
T Consensus 99 ----------------------------------------------------------------~~h~~SVNsV~waphe 114 (299)
T KOG1332|consen 99 ----------------------------------------------------------------AAHSASVNSVAWAPHE 114 (299)
T ss_pred ----------------------------------------------------------------hhhcccceeecccccc
Confidence 024456677777664
Q ss_pred -CCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecC-CC-----------CEEEEEeCCCeEE
Q 019405 174 -EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID-DH-----------RKFVAGTNDHQVR 240 (341)
Q Consensus 174 -~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~-----------~~l~~~~~d~~i~ 240 (341)
|-.|++++.||.|.+.+.+....-. .......|+-.|++++|.|.. .| +.|++|+.|..|+
T Consensus 115 ygl~LacasSDG~vsvl~~~~~g~w~------t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~Vk 188 (299)
T KOG1332|consen 115 YGLLLACASSDGKVSVLTYDSSGGWT------TSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVK 188 (299)
T ss_pred cceEEEEeeCCCcEEEEEEcCCCCcc------chhhhhccccccceeeecCcCCCccccccCcccccceeeccCCcccee
Confidence 5678899999999999887531100 001112244568899995421 12 5799999999999
Q ss_pred EEEcCCCC-ceeEEEEecCCCeEEEEEcCCC----ceEEEEeCCCCEEEEECCCC--eE-EeEEeccccCceeEEEecCC
Q 019405 241 LYDTSAQR-RPVMSFDFRETPIKAVAEEPDS----FNIYIGNGSGDLASVDIRTG--KL-LGCFIGKCSGSIRSIARHPT 312 (341)
Q Consensus 241 iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~----~~l~~g~~dg~i~iwd~~~~--~~-~~~~~~~~~~~i~~~~~~~~ 312 (341)
||+...++ ...+.+.+|.+.|+.++|.|.- .+|++++.||++.||..+.- .. ...+... ...++++.|+..
T Consensus 189 iW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f-~~~~w~vSWS~s 267 (299)
T KOG1332|consen 189 IWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEF-PDVVWRVSWSLS 267 (299)
T ss_pred eeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccC-CcceEEEEEecc
Confidence 99998753 2234588999999999999954 68999999999999976521 11 1112222 678999999999
Q ss_pred CCEEEEEeCCCcEEEEEcC
Q 019405 313 LPIIASCGLDSYLRFWDIK 331 (341)
Q Consensus 313 ~~~l~s~~~dg~v~iwd~~ 331 (341)
|++|+.++.|+.|.+|.-+
T Consensus 268 Gn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 268 GNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ccEEEEecCCcEEEEEEeC
Confidence 9999999999999999754
No 101
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=7.9e-26 Score=194.44 Aligned_cols=212 Identities=15% Similarity=0.105 Sum_probs=169.5
Q ss_pred eeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccc
Q 019405 43 ERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSR 122 (341)
Q Consensus 43 ~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (341)
..|.+|...|..++||.++- |++++.|.+||+|++...++++.+.. .+-++|+++.+.++.
T Consensus 363 ~ef~GHt~DILDlSWSKn~f-----LLSSSMDKTVRLWh~~~~~CL~~F~H---------ndfVTcVaFnPvDDr----- 423 (712)
T KOG0283|consen 363 CEFKGHTADILDLSWSKNNF-----LLSSSMDKTVRLWHPGRKECLKVFSH---------NDFVTCVAFNPVDDR----- 423 (712)
T ss_pred hhhhccchhheecccccCCe-----eEeccccccEEeecCCCcceeeEEec---------CCeeEEEEecccCCC-----
Confidence 44567888888888887654 99999999999999999999988874 488999999998875
Q ss_pred cceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCC
Q 019405 123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKP 202 (341)
Q Consensus 123 ~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~ 202 (341)
++++|+-||.++||++ .+..|-.|.-. ..-|+++++.|+|+..++|+.+|.+++|+....+.......
T Consensus 424 --yFiSGSLD~KvRiWsI---------~d~~Vv~W~Dl-~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I 491 (712)
T KOG0283|consen 424 --YFISGSLDGKVRLWSI---------SDKKVVDWNDL-RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHI 491 (712)
T ss_pred --cEeecccccceEEeec---------CcCeeEeehhh-hhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeE
Confidence 9999999999999998 45577778753 47899999999999999999999999999988776655443
Q ss_pred CCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCC--CeEEEEEcCCCceEEEEeCCC
Q 019405 203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRET--PIKAVAEEPDSFNIYIGNGSG 280 (341)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~g~~dg 280 (341)
.....-...+. .|+.+.|+| .+...+++.+.|..|||||.++.. ++..+++... .-....|+.+|++|++++.|.
T Consensus 492 ~~~~~Kk~~~~-rITG~Q~~p-~~~~~vLVTSnDSrIRI~d~~~~~-lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs 568 (712)
T KOG0283|consen 492 RLHNKKKKQGK-RITGLQFFP-GDPDEVLVTSNDSRIRIYDGRDKD-LVHKFKGFRNTSSQISASFSSDGKHIVSASEDS 568 (712)
T ss_pred eeccCccccCc-eeeeeEecC-CCCCeEEEecCCCceEEEeccchh-hhhhhcccccCCcceeeeEccCCCEEEEeecCc
Confidence 32222222233 699999963 334467777899999999998744 4777776432 234568999999999999999
Q ss_pred CEEEEECC
Q 019405 281 DLASVDIR 288 (341)
Q Consensus 281 ~i~iwd~~ 288 (341)
.|++|+..
T Consensus 569 ~VYiW~~~ 576 (712)
T KOG0283|consen 569 WVYIWKND 576 (712)
T ss_pred eEEEEeCC
Confidence 99999974
No 102
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=1.8e-26 Score=176.91 Aligned_cols=205 Identities=16% Similarity=0.151 Sum_probs=164.6
Q ss_pred eeEEEcccceeEEEEeeecc------c-cccc---CCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCC
Q 019405 125 TLLTCTTKGKASMRSIEVTK------V-SAES---SCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC 194 (341)
Q Consensus 125 ~l~~~~~~g~~~i~~~~~~~------~-~~~~---~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~ 194 (341)
.+++|+.|-.|+|.+++..- . ..+. .--.|+.+- .|-.+|.++.|+|....|++++.|++|++||+...
T Consensus 126 lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlY-DH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~ 204 (430)
T KOG0640|consen 126 LVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLY-DHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKT 204 (430)
T ss_pred EEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehh-hccCcccceeecchhheEEeccCCCeEEEEecccH
Confidence 89999999999999987321 1 0111 111233322 35688999999999999999999999999999764
Q ss_pred ceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEE--EEecCCCeEEEEEcCCCce
Q 019405 195 EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS--FDFRETPIKAVAEEPDSFN 272 (341)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~ 272 (341)
...+.++.-. ....|.++.| +|.|.+|+.|..-.++++||+.+.++-+.. -..|.+.|+++.+++.+++
T Consensus 205 saKrA~K~~q-------d~~~vrsiSf--HPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~l 275 (430)
T KOG0640|consen 205 SAKRAFKVFQ-------DTEPVRSISF--HPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSL 275 (430)
T ss_pred HHHHHHHHhh-------ccceeeeEee--cCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccE
Confidence 3333222211 1255999999 789999999999999999999986642221 2348899999999999999
Q ss_pred EEEEeCCCCEEEEECCCCeEEeEEe-ccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 273 IYIGNGSGDLASVDIRTGKLLGCFI-GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 273 l~~g~~dg~i~iwd~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
.++|+.||.|+|||--+++++.++. .|....|.+..|..+++++++.+.|..|++|.+.+++++.++
T Consensus 276 YvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Y 343 (430)
T KOG0640|consen 276 YVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEY 343 (430)
T ss_pred EEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEE
Confidence 9999999999999999999998886 454568999999999999999999999999999999999875
No 103
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=1.1e-26 Score=172.95 Aligned_cols=228 Identities=18% Similarity=0.192 Sum_probs=183.6
Q ss_pred ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCc-chheeec
Q 019405 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD-LRVAISN 93 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~ 93 (341)
.++.+++.|=+-|+|+.-.. ..++.| +|..-|..++|+.|.+ +|++|+.+..+||||++..+ +..++.+
T Consensus 72 ~~aasaaadftakvw~a~tg-----delhsf-~hkhivk~~af~~ds~----~lltgg~ekllrvfdln~p~App~E~~g 141 (334)
T KOG0278|consen 72 TRAASAAADFTAKVWDAVTG-----DELHSF-EHKHIVKAVAFSQDSN----YLLTGGQEKLLRVFDLNRPKAPPKEISG 141 (334)
T ss_pred hhhhhhcccchhhhhhhhhh-----hhhhhh-hhhheeeeEEecccch----hhhccchHHHhhhhhccCCCCCchhhcC
Confidence 44555556666688887765 455566 6788899999999888 89999999999999997533 3344444
Q ss_pred cCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCC
Q 019405 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS 173 (341)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~ 173 (341)
|.+.|..+.|...+. .+++.+.|+++++||..... .+.. +....+|.++.++++
T Consensus 142 --------htg~Ir~v~wc~eD~--------~iLSSadd~tVRLWD~rTgt--------~v~s--L~~~s~VtSlEvs~d 195 (334)
T KOG0278|consen 142 --------HTGGIRTVLWCHEDK--------CILSSADDKTVRLWDHRTGT--------EVQS--LEFNSPVTSLEVSQD 195 (334)
T ss_pred --------CCCcceeEEEeccCc--------eEEeeccCCceEEEEeccCc--------EEEE--EecCCCCcceeeccC
Confidence 567888888887777 89999999999999987544 3333 345678999999999
Q ss_pred CCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEE
Q 019405 174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS 253 (341)
Q Consensus 174 ~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 253 (341)
|.+|.++. .+.|++||..+...+..++.+. .|.+... +|+...+++|++|..++.||..+++. +..
T Consensus 196 G~ilTia~-gssV~Fwdaksf~~lKs~k~P~----------nV~SASL--~P~k~~fVaGged~~~~kfDy~TgeE-i~~ 261 (334)
T KOG0278|consen 196 GRILTIAY-GSSVKFWDAKSFGLLKSYKMPC----------NVESASL--HPKKEFFVAGGEDFKVYKFDYNTGEE-IGS 261 (334)
T ss_pred CCEEEEec-CceeEEeccccccceeeccCcc----------ccccccc--cCCCceEEecCcceEEEEEeccCCce-eee
Confidence 98877654 4589999999988888777653 3777788 78889999999999999999999886 555
Q ss_pred E-EecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeE
Q 019405 254 F-DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL 292 (341)
Q Consensus 254 ~-~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~ 292 (341)
+ ++|-++|.|+.|+|+|...++|+.||+|+||....++.
T Consensus 262 ~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 262 YNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred cccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 4 88999999999999999999999999999998765543
No 104
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.95 E-value=3.4e-25 Score=174.83 Aligned_cols=305 Identities=34% Similarity=0.517 Sum_probs=222.9
Q ss_pred ceeeeecCCCCeEEEEEecCccCc-cc---eeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchhe
Q 019405 15 LRALTFDSLGLIKVIEARGEHGGV-PK---VVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVA 90 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~~g~-~~---~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 90 (341)
+.+..+...|..+-..+.....+. .+ .+..--.....+..++|..++. .+.|.....|..+.....+.......
T Consensus 17 ~~~~Vg~~tG~lkgi~~~~~t~~~~~~nls~~~s~~~~~~ris~l~~~~d~~--tevl~~r~~~~~~~~~~~~E~~~~s~ 94 (412)
T KOG3881|consen 17 MPLYVGTHTGQLKGIYLKRNTVISEDENLSALNSGVDELDRISSLLFGVDGE--TEVLNARSADDDLPKFVIEEFEISSS 94 (412)
T ss_pred cceEEeccccccccceEeeccccccchhhhhhhcccchhhhhhhheeecCCc--eeEeeccccCcccccccccCCccccc
Confidence 345566666666555554431000 00 0000112334455666665544 22333333666666666665554444
Q ss_pred eeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEe
Q 019405 91 ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV 170 (341)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~ 170 (341)
..... ..+...++|..+... ++.|++|..+|.+.+|.+.....- +..+..|. .+..+..+.-
T Consensus 95 ~~~~~--~~~l~~~~I~gl~~~----------dg~Litc~~sG~l~~~~~k~~d~h----ss~l~~la--~g~g~~~~r~ 156 (412)
T KOG3881|consen 95 LDDAK--TVSLGTKSIKGLKLA----------DGTLITCVSSGNLQVRHDKSGDLH----SSKLIKLA--TGPGLYDVRQ 156 (412)
T ss_pred ccccc--ccccccccccchhhc----------CCEEEEEecCCcEEEEeccCCccc----cccceeee--cCCceeeecc
Confidence 31100 011233555555542 338999999999999998754321 22333333 3456667766
Q ss_pred cCCC-CEEEEeeCC--CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCC
Q 019405 171 DISE-KFSLFGGKG--VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ 247 (341)
Q Consensus 171 ~~~~-~~l~~~~~d--~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 247 (341)
++.. .++++|+.. +.+++||+++.++++..++..+..+++..|.|++++.|.+......|++++.-+++++||.+.+
T Consensus 157 ~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~q 236 (412)
T KOG3881|consen 157 TDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQ 236 (412)
T ss_pred CCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCccc
Confidence 6644 556669998 8899999999999999999999999999999999999964333789999999999999999999
Q ss_pred CceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeE-EeccccCceeEEEecCCCCEEEEEeCCCcEE
Q 019405 248 RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGC-FIGKCSGSIRSIARHPTLPIIASCGLDSYLR 326 (341)
Q Consensus 248 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~ 326 (341)
.+|+..+...+.+++++...|.+++|++|..-+.+..||++.++.+.. +++. .+.|.++..+|.+++|+++|.|..||
T Consensus 237 RRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~-tGsirsih~hp~~~~las~GLDRyvR 315 (412)
T KOG3881|consen 237 RRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI-TGSIRSIHCHPTHPVLASCGLDRYVR 315 (412)
T ss_pred CcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCc-cCCcceEEEcCCCceEEeeccceeEE
Confidence 999999999999999999999999999999999999999999999877 7776 89999999999999999999999999
Q ss_pred EEEcCCCceeeeec
Q 019405 327 FWDIKTRQLLSAVC 340 (341)
Q Consensus 327 iwd~~~~~~~~~~~ 340 (341)
|+|+++.+++..+|
T Consensus 316 IhD~ktrkll~kvY 329 (412)
T KOG3881|consen 316 IHDIKTRKLLHKVY 329 (412)
T ss_pred Eeecccchhhhhhh
Confidence 99999999988877
No 105
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.1e-24 Score=166.32 Aligned_cols=259 Identities=12% Similarity=0.101 Sum_probs=197.2
Q ss_pred eeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCC
Q 019405 17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGD 96 (341)
Q Consensus 17 ~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 96 (341)
+.+++-||+||+|++.+. |.... .....|++++.+++|+.|++ .+++|+.|+.+++||+.+++. ..+..
T Consensus 43 ~~A~SWD~tVR~wevq~~--g~~~~-ka~~~~~~PvL~v~Wsddgs----kVf~g~~Dk~~k~wDL~S~Q~-~~v~~--- 111 (347)
T KOG0647|consen 43 LAAGSWDGTVRIWEVQNS--GQLVP-KAQQSHDGPVLDVCWSDDGS----KVFSGGCDKQAKLWDLASGQV-SQVAA--- 111 (347)
T ss_pred EEecccCCceEEEEEecC--Ccccc-hhhhccCCCeEEEEEccCCc----eEEeeccCCceEEEEccCCCe-eeeee---
Confidence 457788999999999996 32222 23556899999999999887 799999999999999999854 44444
Q ss_pred CCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCE
Q 019405 97 SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKF 176 (341)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~ 176 (341)
|+.++..+.|++...-. .|++|+.|.+++.||.+... ++...+ -.+.+++++. ...+
T Consensus 112 -----Hd~pvkt~~wv~~~~~~------cl~TGSWDKTlKfWD~R~~~--------pv~t~~--LPeRvYa~Dv--~~pm 168 (347)
T KOG0647|consen 112 -----HDAPVKTCHWVPGMNYQ------CLVTGSWDKTLKFWDTRSSN--------PVATLQ--LPERVYAADV--LYPM 168 (347)
T ss_pred -----cccceeEEEEecCCCcc------eeEecccccceeecccCCCC--------eeeeee--ccceeeehhc--cCce
Confidence 56888899998765522 88999999999999987433 333333 3456666654 3457
Q ss_pred EEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCC-ceeEEEE
Q 019405 177 SLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR-RPVMSFD 255 (341)
Q Consensus 177 l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~ 255 (341)
++++..+..|.+|+++++........... .-.++|++.+ .+....+.|+-+|.+-+..+..+. ..-..++
T Consensus 169 ~vVata~r~i~vynL~n~~te~k~~~SpL-------k~Q~R~va~f--~d~~~~alGsiEGrv~iq~id~~~~~~nFtFk 239 (347)
T KOG0647|consen 169 AVVATAERHIAVYNLENPPTEFKRIESPL-------KWQTRCVACF--QDKDGFALGSIEGRVAIQYIDDPNPKDNFTFK 239 (347)
T ss_pred eEEEecCCcEEEEEcCCCcchhhhhcCcc-------cceeeEEEEE--ecCCceEeeeecceEEEEecCCCCccCceeEE
Confidence 88888999999999987544332221111 1347888884 566666999999999999888742 1244566
Q ss_pred ecCC---------CeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEE
Q 019405 256 FRET---------PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASC 319 (341)
Q Consensus 256 ~~~~---------~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 319 (341)
.|.. +|++++|+|.-..|++.+.||+..+||-+....+.+.+.| ..+|++..|+.+|.+++-+
T Consensus 240 CHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~-~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 240 CHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETH-PQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred EeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcC-CCccceeEecCCCCEEEEE
Confidence 6652 5788999999899999999999999999888888888887 8999999999999987754
No 106
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1.1e-26 Score=181.46 Aligned_cols=247 Identities=13% Similarity=0.166 Sum_probs=195.8
Q ss_pred eeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccc
Q 019405 41 VVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS 120 (341)
Q Consensus 41 ~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (341)
.+..+.+|...|.+++-.+..- ..+++|+.||.|+|||+.+..+..++.. |.+.+.++.+-. .
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~l---s~~aSGs~DG~VkiWnlsqR~~~~~f~A--------H~G~V~Gi~v~~--~---- 120 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKL---STVASGSCDGEVKIWNLSQRECIRTFKA--------HEGLVRGICVTQ--T---- 120 (433)
T ss_pred chhhccccccccchhhcCcchh---hhhhccccCceEEEEehhhhhhhheeec--------ccCceeeEEecc--c----
Confidence 3456678999999888555442 2599999999999999999999999887 456777777755 3
Q ss_pred cccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeec
Q 019405 121 SRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTA 200 (341)
Q Consensus 121 ~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~ 200 (341)
.+++++.|.+++.|.++.. .++.+.. ...+..++-+..+..++++|.+ |.|||.....++..+
T Consensus 121 ----~~~tvgdDKtvK~wk~~~~---------p~~tilg--~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~Pv~sm 183 (433)
T KOG0268|consen 121 ----SFFTVGDDKTVKQWKIDGP---------PLHTILG--KSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDNPVSSM 183 (433)
T ss_pred ----ceEEecCCcceeeeeccCC---------cceeeec--cccccccccccccccccccCce--eeecccccCCcccee
Confidence 8999999999999997642 3344332 3456666666677888988864 999999877777666
Q ss_pred CCCCCCccCccCCeeeeEEEEEecCC-CCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCC
Q 019405 201 KPPPKNSLGIFTPTWFTSAAFLSIDD-HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS 279 (341)
Q Consensus 201 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d 279 (341)
.-.. ..|.++.| +|. ...|+++..|+.|.+||+++.. |++.+.. ...-+.++|+|++-.+++|+.|
T Consensus 184 swG~---------Dti~svkf--NpvETsILas~~sDrsIvLyD~R~~~-Pl~KVi~-~mRTN~IswnPeafnF~~a~ED 250 (433)
T KOG0268|consen 184 SWGA---------DSISSVKF--NPVETSILASCASDRSIVLYDLRQAS-PLKKVIL-TMRTNTICWNPEAFNFVAANED 250 (433)
T ss_pred ecCC---------CceeEEec--CCCcchheeeeccCCceEEEecccCC-ccceeee-eccccceecCccccceeecccc
Confidence 5533 44899999 554 4567777799999999999865 5665543 2456789999988889999999
Q ss_pred CCEEEEECCCC-eEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCce
Q 019405 280 GDLASVDIRTG-KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL 335 (341)
Q Consensus 280 g~i~iwd~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 335 (341)
..++.||++.. +++...++| .+.|.+++|+|.|+-+++||.|.+|+||.++.+..
T Consensus 251 ~nlY~~DmR~l~~p~~v~~dh-vsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~S 306 (433)
T KOG0268|consen 251 HNLYTYDMRNLSRPLNVHKDH-VSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHS 306 (433)
T ss_pred ccceehhhhhhcccchhhccc-ceeEEEeccCCCcchhccccccceEEEeecCCCcc
Confidence 99999999875 457778888 89999999999999999999999999999987654
No 107
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1e-23 Score=155.06 Aligned_cols=257 Identities=15% Similarity=0.167 Sum_probs=187.7
Q ss_pred cCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccce
Q 019405 46 GDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT 125 (341)
Q Consensus 46 ~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (341)
+.|.++++|++||+.+. +|++|+.|.+|++.-+....+.. .+ .+..+.-|++.+..+++.+... +.. .
T Consensus 86 khhkgsiyc~~ws~~ge----liatgsndk~ik~l~fn~dt~~~--~g-~dle~nmhdgtirdl~fld~~~----s~~-~ 153 (350)
T KOG0641|consen 86 KHHKGSIYCTAWSPCGE----LIATGSNDKTIKVLPFNADTCNA--TG-HDLEFNMHDGTIRDLAFLDDPE----SGG-A 153 (350)
T ss_pred cccCccEEEEEecCccC----eEEecCCCceEEEEecccccccc--cC-cceeeeecCCceeeeEEecCCC----cCc-e
Confidence 45889999999887766 99999999999998665432211 11 1122334778899999987654 122 4
Q ss_pred eEEEcccceeEEE--EeeecccccccCCceEEEEEeecCCceEEE-EecCCCCEEEEeeCCCeEEEEECCCCceeeecCC
Q 019405 126 LLTCTTKGKASMR--SIEVTKVSAESSCSTVKSWNVCASGTIAFS-KVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKP 202 (341)
Q Consensus 126 l~~~~~~g~~~i~--~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~-~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~ 202 (341)
++.....|.-.|| +...+. ....+.- |.+.|..+ .| ++-++++|+.|.+|++||++-...+..+.+
T Consensus 154 il~s~gagdc~iy~tdc~~g~--------~~~a~sg-htghilalysw--n~~m~~sgsqdktirfwdlrv~~~v~~l~~ 222 (350)
T KOG0641|consen 154 ILASAGAGDCKIYITDCGRGQ--------GFHALSG-HTGHILALYSW--NGAMFASGSQDKTIRFWDLRVNSCVNTLDN 222 (350)
T ss_pred EEEecCCCcceEEEeecCCCC--------cceeecC-CcccEEEEEEe--cCcEEEccCCCceEEEEeeeccceeeeccC
Confidence 4433334444444 432221 2333332 34445444 34 478999999999999999998877776654
Q ss_pred CCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCE
Q 019405 203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDL 282 (341)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i 282 (341)
..... .+ ....|.+++. .|.|++|++|-.|....+||++.+. +++.+..|...|.++.|+|...++++++.|..|
T Consensus 223 ~~~~~-gl-essavaav~v--dpsgrll~sg~~dssc~lydirg~r-~iq~f~phsadir~vrfsp~a~yllt~syd~~i 297 (350)
T KOG0641|consen 223 DFHDG-GL-ESSAVAAVAV--DPSGRLLASGHADSSCMLYDIRGGR-MIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKI 297 (350)
T ss_pred cccCC-Cc-ccceeEEEEE--CCCcceeeeccCCCceEEEEeeCCc-eeeeeCCCccceeEEEeCCCceEEEEecccceE
Confidence 32211 00 1256888999 8999999999999999999999765 699999999999999999999999999999999
Q ss_pred EEEECCCC---e-EEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcC
Q 019405 283 ASVDIRTG---K-LLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331 (341)
Q Consensus 283 ~iwd~~~~---~-~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~ 331 (341)
++-|++.. + .+.....| .+.+..+.|+|..--+++.+.|.++.+|-++
T Consensus 298 kltdlqgdla~el~~~vv~eh-kdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 298 KLTDLQGDLAHELPIMVVAEH-KDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEeecccchhhcCceEEEEec-cCceEEEEecCccceeeeccCcceEEEeccC
Confidence 99998732 2 23334455 8888899999999999999999999999764
No 108
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=1.8e-25 Score=182.26 Aligned_cols=274 Identities=14% Similarity=0.094 Sum_probs=188.9
Q ss_pred eccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCc-chheeeccCCCCCCCCCCceeeEeeeeccccccccc
Q 019405 44 RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD-LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSR 122 (341)
Q Consensus 44 ~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (341)
.+.+|...|..+++-+.+. .|++|+.|.+|+.||+..-. ..+.++...+ .....+.++.|....+
T Consensus 162 ~l~hgtk~Vsal~~Dp~Ga----R~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P----~E~h~i~sl~ys~Tg~------ 227 (641)
T KOG0772|consen 162 QLKHGTKIVSALAVDPSGA----RFVSGSLDYTVKFWDFQGMDASMRSFRQLQP----CETHQINSLQYSVTGD------ 227 (641)
T ss_pred eccCCceEEEEeeecCCCc----eeeeccccceEEEEecccccccchhhhccCc----ccccccceeeecCCCC------
Confidence 5667788888888776666 89999999999999996421 1222322211 1234555666655555
Q ss_pred cceeEEEcccceeEEEEeeeccccc-ccCCceEEEEEe--ecCCceEEEEecCCC-CEEEEeeCCCeEEEEECCCCc-ee
Q 019405 123 SRTLLTCTTKGKASMRSIEVTKVSA-ESSCSTVKSWNV--CASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCE-KI 197 (341)
Q Consensus 123 ~~~l~~~~~~g~~~i~~~~~~~~~~-~~~~~~v~~~~~--~~~~~i~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~-~~ 197 (341)
.+++.+.....+++|-+...... ...|..|+-... .|-..++|.+|+|.. +.+++++.||++++||+.+.+ ++
T Consensus 228 --~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~ 305 (641)
T KOG0772|consen 228 --QILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQL 305 (641)
T ss_pred --eEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhe
Confidence 78888878888888743222110 112222221111 123467889999965 678999999999999998643 33
Q ss_pred eecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCC-ce-eEEEEecCC--CeEEEEEcCCCceE
Q 019405 198 WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR-RP-VMSFDFRET--PIKAVAEEPDSFNI 273 (341)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~-~~~~~~~~~--~v~~~~~~~~~~~l 273 (341)
..++..... .....++.++| ++++++||+|+.||.|.+|+..... .+ ...-..|.. .|+++.||++|++|
T Consensus 306 qVik~k~~~----g~Rv~~tsC~~--nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~L 379 (641)
T KOG0772|consen 306 QVIKTKPAG----GKRVPVTSCAW--NRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYL 379 (641)
T ss_pred eEEeeccCC----CcccCceeeec--CCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchh
Confidence 333322111 12245889999 9999999999999999999975432 22 233345766 89999999999999
Q ss_pred EEEeCCCCEEEEECCCCe-EEeEEecc-ccCceeEEEecCCCCEEEEEe------CCCcEEEEEcCCCceeeee
Q 019405 274 YIGNGSGDLASVDIRTGK-LLGCFIGK-CSGSIRSIARHPTLPIIASCG------LDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 274 ~~g~~dg~i~iwd~~~~~-~~~~~~~~-~~~~i~~~~~~~~~~~l~s~~------~dg~v~iwd~~~~~~~~~~ 339 (341)
++-+.|+++++||+++.+ ++....+- ..-+-+.++|||+.++|++|. ..|.+.+||..+-..+++|
T Consensus 380 lSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki 453 (641)
T KOG0772|consen 380 LSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKI 453 (641)
T ss_pred hhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEe
Confidence 999999999999999764 45544432 123567899999999999986 4568999999887777765
No 109
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=8e-25 Score=168.51 Aligned_cols=255 Identities=15% Similarity=0.134 Sum_probs=183.1
Q ss_pred eeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcc--hheeeccCCCCCCCCCCceeeEeeeeccccccc
Q 019405 43 ERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL--RVAISNAGDSGAQPEDDGIVGLHLFKRQREESS 120 (341)
Q Consensus 43 ~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (341)
..+++|...|++++|+.|++ +|++++.|++|+||++++... .+.++.. -.-+..+.+.+-+....
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK----~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n------ve~dhpT~V~FapDc~s--- 146 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGK----KLATISGDRSIRLWDVRDFENKEHRCIRQN------VEYDHPTRVVFAPDCKS--- 146 (420)
T ss_pred hhhhccCCceeeeEEcCCCc----eeEEEeCCceEEEEecchhhhhhhhHhhcc------ccCCCceEEEECCCcce---
Confidence 35678999999999999888 899999999999999986321 1222211 12234455555555442
Q ss_pred cccceeEEEcccceeEEEEeeecccccccCCceEEEEE-----eecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCc
Q 019405 121 SRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN-----VCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE 195 (341)
Q Consensus 121 ~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~ 195 (341)
.+++......+.+|.+....+.. ..-...-|+ -.|...+..+-....+++|++++.|..|.+|+++ |+
T Consensus 147 ----~vv~~~~g~~l~vyk~~K~~dG~--~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq 219 (420)
T KOG2096|consen 147 ----VVVSVKRGNKLCVYKLVKKTDGS--GSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQ 219 (420)
T ss_pred ----EEEEEccCCEEEEEEeeecccCC--CCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cc
Confidence 66667777789999887665432 111222233 2234556677777788999999999999999998 88
Q ss_pred eeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCC-------ceeEEEEecCCCeEEEEEcC
Q 019405 196 KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR-------RPVMSFDFRETPIKAVAEEP 268 (341)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-------~~~~~~~~~~~~v~~~~~~~ 268 (341)
.+..+...... -+..+. +|+|+++++++.---|++|..--++ ..+..+++|...|..++|++
T Consensus 220 ~L~~idtnq~~---------n~~aav--SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn 288 (420)
T KOG2096|consen 220 LLQSIDTNQSS---------NYDAAV--SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSN 288 (420)
T ss_pred eeeeecccccc---------ccceee--CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCC
Confidence 87776654321 334456 8999999999999999999863211 12677899999999999999
Q ss_pred CCceEEEEeCCCCEEEEECCC-------------C---------eEE-------------------eEE-----------
Q 019405 269 DSFNIYIGNGSGDLASVDIRT-------------G---------KLL-------------------GCF----------- 296 (341)
Q Consensus 269 ~~~~l~~g~~dg~i~iwd~~~-------------~---------~~~-------------------~~~----------- 296 (341)
+...+++.+.||+++|||+.- + +++ +.+
T Consensus 289 ~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~ 368 (420)
T KOG2096|consen 289 SSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPEL 368 (420)
T ss_pred CcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhH
Confidence 999999999999999998641 1 000 000
Q ss_pred eccccCceeEEEecCCCCEEEEEeCCCcEEEEE
Q 019405 297 IGKCSGSIRSIARHPTLPIIASCGLDSYLRFWD 329 (341)
Q Consensus 297 ~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd 329 (341)
..-|...|.+++|+++|+++++++ |..++++.
T Consensus 369 e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 369 EDIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred HHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 011467899999999999999985 66788876
No 110
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=4.2e-25 Score=177.91 Aligned_cols=251 Identities=15% Similarity=0.131 Sum_probs=200.5
Q ss_pred CeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCC
Q 019405 25 LIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDD 104 (341)
Q Consensus 25 ~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 104 (341)
.+.+|.+.+.. .+ +.+---.+++.+++-++.+. +|+.|+-.|.|++|.+.+|..+..+.. |-.
T Consensus 62 ~l~vw~i~k~~----~~-~q~~v~Pg~v~al~s~n~G~----~l~ag~i~g~lYlWelssG~LL~v~~a--------HYQ 124 (476)
T KOG0646|consen 62 LLHVWEILKKD----QV-VQYIVLPGPVHALASSNLGY----FLLAGTISGNLYLWELSSGILLNVLSA--------HYQ 124 (476)
T ss_pred cccccccCchh----hh-hhhcccccceeeeecCCCce----EEEeecccCcEEEEEeccccHHHHHHh--------hcc
Confidence 45677766652 11 11223457788888666666 788887999999999999999998876 447
Q ss_pred ceeeEeeeeccccccccccceeEEEcccceeEEEEeeeccccccc-CCceEEEEEeecCCceEEEEecCC--CCEEEEee
Q 019405 105 GIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAES-SCSTVKSWNVCASGTIAFSKVDIS--EKFSLFGG 181 (341)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~-~~~~v~~~~~~~~~~i~~~~~~~~--~~~l~~~~ 181 (341)
.++|+.+..++. .+++++.||.+.+|.+..--.+... ...+++.|. .|.-+|+.+...+. ..++++++
T Consensus 125 ~ITcL~fs~dgs--------~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~-~HtlsITDl~ig~Gg~~~rl~TaS 195 (476)
T KOG0646|consen 125 SITCLKFSDDGS--------HIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFS-DHTLSITDLQIGSGGTNARLYTAS 195 (476)
T ss_pred ceeEEEEeCCCc--------EEEecCCCccEEEEEEEeecccccCCCccceeeec-cCcceeEEEEecCCCccceEEEec
Confidence 899999988777 9999999999999998654332211 345677887 47788999988764 46899999
Q ss_pred CCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCC-------------
Q 019405 182 KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR------------- 248 (341)
Q Consensus 182 ~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~------------- 248 (341)
.|.++++||+..+..+..+..+ ..+.+++. +|.+..+..|+.+|.|.+.++....
T Consensus 196 ~D~t~k~wdlS~g~LLlti~fp----------~si~av~l--Dpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~ 263 (476)
T KOG0646|consen 196 EDRTIKLWDLSLGVLLLTITFP----------SSIKAVAL--DPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHE 263 (476)
T ss_pred CCceEEEEEeccceeeEEEecC----------CcceeEEE--cccccEEEecCCcceEEeeehhcCCccccccccccccc
Confidence 9999999999999988887764 45899999 8999999999999999988875422
Q ss_pred --ceeEEEEecCC--CeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCC
Q 019405 249 --RPVMSFDFRET--PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP 314 (341)
Q Consensus 249 --~~~~~~~~~~~--~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 314 (341)
..+..+.+|.. +|+|++++-||.+|++|+.||.+.|||+.+.++++++... .++|+.+.+.|-.+
T Consensus 264 ~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~-kgpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 264 ENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTS-KGPVTNLQINPLER 332 (476)
T ss_pred ccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhh-ccccceeEeecccc
Confidence 12556777877 9999999999999999999999999999999999888754 78999999976543
No 111
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=4e-25 Score=186.08 Aligned_cols=250 Identities=14% Similarity=0.200 Sum_probs=195.3
Q ss_pred ceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceee-Eeeeeccccc
Q 019405 40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVG-LHLFKRQREE 118 (341)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 118 (341)
++...+.+|...+..+++.... .+++++.||++++|+...++.+...... .+.+-+.+ +++.+.++
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~-----~i~s~sRd~t~~vw~~~~~~~l~~~~~~------~~~g~i~~~i~y~e~~~-- 71 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGV-----CIISGSRDGTVKVWAKKGKQYLETHAFE------GPKGFIANSICYAESDK-- 71 (745)
T ss_pred eeEEEeccCccchheeEecCCe-----EEeecCCCCceeeeeccCcccccceecc------cCcceeeccceeccccC--
Confidence 4555678898888877755433 5999999999999998776665533221 12344444 55554332
Q ss_pred cccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceee
Q 019405 119 SSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIW 198 (341)
Q Consensus 119 ~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~ 198 (341)
..+++++.|+.+.+|.+.... ++.... .|...|.+++...++. +++|+.|.++++|... +...
T Consensus 72 -----~~l~~g~~D~~i~v~~~~~~~--------P~~~Lk-gH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~--~l~~ 134 (745)
T KOG0301|consen 72 -----GRLVVGGMDTTIIVFKLSQAE--------PLYTLK-GHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG--ELVY 134 (745)
T ss_pred -----cceEeecccceEEEEecCCCC--------chhhhh-ccccceeeeecCCcCc-eEecccccceEEecch--hhhc
Confidence 179999999999999876443 344433 4778899999887777 9999999999999874 3444
Q ss_pred ecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeC
Q 019405 199 TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG 278 (341)
Q Consensus 199 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~ 278 (341)
.+++| +..|.++... |++ .+++|+.|.+|++|.-. + .++++.+|.+-|+.+++-+++ .+++++.
T Consensus 135 ~l~gH---------~asVWAv~~l--~e~-~~vTgsaDKtIklWk~~--~-~l~tf~gHtD~VRgL~vl~~~-~flScsN 198 (745)
T KOG0301|consen 135 SLQGH---------TASVWAVASL--PEN-TYVTGSADKTIKLWKGG--T-LLKTFSGHTDCVRGLAVLDDS-HFLSCSN 198 (745)
T ss_pred ccCCc---------chheeeeeec--CCC-cEEeccCcceeeeccCC--c-hhhhhccchhheeeeEEecCC-CeEeecC
Confidence 45554 4668898884 455 88999999999999753 3 488999999999999998876 5778999
Q ss_pred CCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 279 SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 279 dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
||.|++|++ +|+.+.++.+| .+-|+++...+++..++++++|++++||+.. ++.+.|
T Consensus 199 Dg~Ir~w~~-~ge~l~~~~gh-tn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I 255 (745)
T KOG0301|consen 199 DGSIRLWDL-DGEVLLEMHGH-TNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVI 255 (745)
T ss_pred CceEEEEec-cCceeeeeecc-ceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEE
Confidence 999999999 79999999998 9999999988888899999999999999987 566554
No 112
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.2e-24 Score=187.07 Aligned_cols=243 Identities=12% Similarity=0.102 Sum_probs=193.1
Q ss_pred CCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCC-cchheeeccCCCCCCCCCCceeeEeeeeccccccccccce
Q 019405 47 DPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG-DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT 125 (341)
Q Consensus 47 ~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (341)
.|...-+.+++.+++. +|++++.||.|++|+..+- +.-.++.. +...+.++.... +.
T Consensus 11 aht~G~t~i~~d~~ge----fi~tcgsdg~ir~~~~~sd~e~P~ti~~--------~g~~v~~ia~~s----------~~ 68 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGE----FICTCGSDGDIRKWKTNSDEEEPETIDI--------SGELVSSIACYS----------NH 68 (933)
T ss_pred hccCceEEEEEcCCCC----EEEEecCCCceEEeecCCcccCCchhhc--------cCceeEEEeecc----------cc
Confidence 3666677777776666 8999999999999987654 22222221 224454444322 28
Q ss_pred eEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCC
Q 019405 126 LLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPK 205 (341)
Q Consensus 126 l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~ 205 (341)
|++++.++++..+.+.... .++.+..+.. ++.+++++.+|+++|.|+.|-.|++-++.+......+..+.
T Consensus 69 f~~~s~~~tv~~y~fps~~-----~~~iL~Rftl----p~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~- 138 (933)
T KOG1274|consen 69 FLTGSEQNTVLRYKFPSGE-----EDTILARFTL----PIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHD- 138 (933)
T ss_pred eEEeeccceEEEeeCCCCC-----ccceeeeeec----cceEEEEecCCcEEEeecCceeEEEEeccccchheeecccC-
Confidence 9999999999999876544 4445555443 78999999999999999999999999999988888888865
Q ss_pred CccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEe-------c-CCCeEEEEEcCCCceEEEEe
Q 019405 206 NSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF-------R-ETPIKAVAEEPDSFNIYIGN 277 (341)
Q Consensus 206 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-------~-~~~v~~~~~~~~~~~l~~g~ 277 (341)
.+|.++.| +|++++||+.+.||.|++||+.++.. .+.+.+ - ...+..++|+|++..+++..
T Consensus 139 --------apVl~l~~--~p~~~fLAvss~dG~v~iw~~~~~~~-~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~ 207 (933)
T KOG1274|consen 139 --------APVLQLSY--DPKGNFLAVSSCDGKVQIWDLQDGIL-SKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP 207 (933)
T ss_pred --------CceeeeeE--cCCCCEEEEEecCceEEEEEcccchh-hhhcccCCccccccccceeeeeeecCCCCeEEeec
Confidence 66999999 89999999999999999999998653 333322 1 34567799999988899999
Q ss_pred CCCCEEEEECCCCeEEeEEeccc-cCceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405 278 GSGDLASVDIRTGKLLGCFIGKC-SGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (341)
Q Consensus 278 ~dg~i~iwd~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 332 (341)
.|+.|++|+..+++....+...+ ...+..+.|+|+|.|||+++.||.|.|||+++
T Consensus 208 ~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 208 VDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred cCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 99999999999999888876532 34599999999999999999999999999996
No 113
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.2e-25 Score=191.47 Aligned_cols=192 Identities=15% Similarity=0.230 Sum_probs=159.3
Q ss_pred ceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecC-CCCEEEEeeCCCeEEEEECCCCceeeecCC
Q 019405 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKP 202 (341)
Q Consensus 124 ~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~ 202 (341)
+.+++++..|.+.+||+.... ....+.+|+ +|...+.+++|++ ..++|++|+.||.|++||++..+....+..
T Consensus 101 NlIAT~s~nG~i~vWdlnk~~-----rnk~l~~f~-EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~ 174 (839)
T KOG0269|consen 101 NLIATCSTNGVISVWDLNKSI-----RNKLLTVFN-EHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRS 174 (839)
T ss_pred hhheeecCCCcEEEEecCccc-----cchhhhHhh-hhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccc
Confidence 389999999999999997632 233555665 5788999999987 457899999999999999998766665555
Q ss_pred CCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCE
Q 019405 203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDL 282 (341)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i 282 (341)
.. ..|..|.|.|. .++.++++...|.+++||++...++...+..|.++|.++.|+|++.+||+|+.|+.|
T Consensus 175 nS---------ESiRDV~fsp~-~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~v 244 (839)
T KOG0269|consen 175 NS---------ESIRDVKFSPG-YGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMV 244 (839)
T ss_pred cc---------hhhhceeeccC-CCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccE
Confidence 22 55999999744 478999999999999999999888889999999999999999999999999999999
Q ss_pred EEEECCCCeE--EeEEeccccCceeEEEecCCCC-EEEEEe--CCCcEEEEEcCCC
Q 019405 283 ASVDIRTGKL--LGCFIGKCSGSIRSIARHPTLP-IIASCG--LDSYLRFWDIKTR 333 (341)
Q Consensus 283 ~iwd~~~~~~--~~~~~~~~~~~i~~~~~~~~~~-~l~s~~--~dg~v~iwd~~~~ 333 (341)
+|||..+.+. +.++. ...+|.++.|-|..+ +|++++ .|-.|+|||++..
T Consensus 245 kiWd~t~~~~~~~~tIn--Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP 298 (839)
T KOG0269|consen 245 KIWDMTDSRAKPKHTIN--TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP 298 (839)
T ss_pred EEEeccCCCccceeEEe--ecceeeeeeeccCccchhhhhhccccceEEEEeeccc
Confidence 9999986654 44443 367999999999877 577766 5779999999753
No 114
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=2e-23 Score=169.98 Aligned_cols=273 Identities=14% Similarity=0.138 Sum_probs=203.4
Q ss_pred eeeecCCCCeEEEEEecCccCccceeeeccCCC-CCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccC
Q 019405 17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPH-SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAG 95 (341)
Q Consensus 17 ~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 95 (341)
++.....|.+..|..... +..+....|+.++ ..|.+++|..++. +++|..+|.|.||+..+.+..+....
T Consensus 215 liit~Gk~H~~Fw~~~~~--~l~k~~~~fek~ekk~Vl~v~F~engd-----viTgDS~G~i~Iw~~~~~~~~k~~~a-- 285 (626)
T KOG2106|consen 215 LIITCGKGHLYFWTLRGG--SLVKRQGIFEKREKKFVLCVTFLENGD-----VITGDSGGNILIWSKGTNRISKQVHA-- 285 (626)
T ss_pred EEEEeCCceEEEEEccCC--ceEEEeeccccccceEEEEEEEcCCCC-----EEeecCCceEEEEeCCCceEEeEeee--
Confidence 334446788899977765 4334444454432 5678888888888 99999999999999977666555543
Q ss_pred CCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccc---cccCCceEEEE---------------
Q 019405 96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS---AESSCSTVKSW--------------- 157 (341)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~---~~~~~~~v~~~--------------- 157 (341)
|++.+-+++..... .|++|..|..+..|+-+..+.. -..+.|.+|..
T Consensus 286 ------H~ggv~~L~~lr~G---------tllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~ 350 (626)
T KOG2106|consen 286 ------HDGGVFSLCMLRDG---------TLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNF 350 (626)
T ss_pred ------cCCceEEEEEecCc---------cEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccce
Confidence 66888888876543 6788999999999994433221 00111222211
Q ss_pred -------------EeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEec
Q 019405 158 -------------NVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSI 224 (341)
Q Consensus 158 -------------~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 224 (341)
-..|......++.+|+.+.+++++.|+.+++|+ ..+..+..... .++.|+.| +
T Consensus 351 iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~----------d~~~~~~f--h 416 (626)
T KOG2106|consen 351 ILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIE----------DPAECADF--H 416 (626)
T ss_pred EEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEec----------CceeEeec--c
Confidence 112335678889999999999999999999999 44444443322 44889999 7
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCC-CeEEeEEeccccCc
Q 019405 225 DDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT-GKLLGCFIGKCSGS 303 (341)
Q Consensus 225 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~ 303 (341)
|.+ .++.|...|...+.|.++ +..+. +...+.++++++|+|+|.+||.|+.|+.|+||-+.. +........++..+
T Consensus 417 psg-~va~Gt~~G~w~V~d~e~-~~lv~-~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ 493 (626)
T KOG2106|consen 417 PSG-VVAVGTATGRWFVLDTET-QDLVT-IHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSP 493 (626)
T ss_pred Ccc-eEEEeeccceEEEEeccc-ceeEE-EEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCce
Confidence 788 999999999999999998 33344 443488999999999999999999999999998864 44444454444689
Q ss_pred eeEEEecCCCCEEEEEeCCCcEEEEEc
Q 019405 304 IRSIARHPTLPIIASCGLDSYLRFWDI 330 (341)
Q Consensus 304 i~~~~~~~~~~~l~s~~~dg~v~iwd~ 330 (341)
|+.+.|++|+++|.+-+-|-.|..|..
T Consensus 494 ithLDwS~Ds~~~~~~S~d~eiLyW~~ 520 (626)
T KOG2106|consen 494 ITHLDWSSDSQFLVSNSGDYEILYWKP 520 (626)
T ss_pred eEEeeecCCCceEEeccCceEEEEEcc
Confidence 999999999999999999999999943
No 115
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=1e-24 Score=184.57 Aligned_cols=258 Identities=16% Similarity=0.207 Sum_probs=195.6
Q ss_pred ceEEEEccCCeEEEeeCCCCcchheeeccCCC----C--------C---CCCCCceeeEeeeeccccccccccceeEEEc
Q 019405 66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDS----G--------A---QPEDDGIVGLHLFKRQREESSSRSRTLLTCT 130 (341)
Q Consensus 66 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~----~--------~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 130 (341)
++++.|+.+|+|+|++.++-..+.++...... + + ++..-+-.-...|++... .+....
T Consensus 271 r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~-------klscVY 343 (1080)
T KOG1408|consen 271 RLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTD-------KLSCVY 343 (1080)
T ss_pred ceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCc-------eEEEEE
Confidence 48999999999999999987777666531100 0 0 000001111122332222 777788
Q ss_pred ccceeEEEEeeeccc-------------------------------------ccccCCceEEEEEeecC-----------
Q 019405 131 TKGKASMRSIEVTKV-------------------------------------SAESSCSTVKSWNVCAS----------- 162 (341)
Q Consensus 131 ~~g~~~i~~~~~~~~-------------------------------------~~~~~~~~v~~~~~~~~----------- 162 (341)
.|+.+.|||++.-+. .+++.|++|++|+....
T Consensus 344 ndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNil 423 (1080)
T KOG1408|consen 344 NDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNIL 423 (1080)
T ss_pred cCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccc
Confidence 888899998765432 14678899999987541
Q ss_pred ------------------------------------CceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCC
Q 019405 163 ------------------------------------GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKN 206 (341)
Q Consensus 163 ------------------------------------~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~ 206 (341)
-.+.+++++|++++||+|...|.+++|++...+....++.|.
T Consensus 424 s~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHe-- 501 (1080)
T KOG1408|consen 424 SANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHE-- 501 (1080)
T ss_pred hhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheeccc--
Confidence 147899999999999999999999999998887777776654
Q ss_pred ccCccCCeeeeEEEEEecC--CCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEE------------------
Q 019405 207 SLGIFTPTWFTSAAFLSID--DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAE------------------ 266 (341)
Q Consensus 207 ~~~~~~~~~v~~~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~------------------ 266 (341)
..|.|+.|. .| ..++|++++.|+.|.+||....-.+++++.+|...|+++.|
T Consensus 502 -------sEilcLeyS-~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksi 573 (1080)
T KOG1408|consen 502 -------SEILCLEYS-FPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSI 573 (1080)
T ss_pred -------ceeEEEeec-CchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhh
Confidence 669999994 22 34789999999999999987654456666666655555555
Q ss_pred -------------------------------cCCCceEEEEeCCCCEEEEECCCCeEEeEEecc--ccCceeEEEecCCC
Q 019405 267 -------------------------------EPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK--CSGSIRSIARHPTL 313 (341)
Q Consensus 267 -------------------------------~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~--~~~~i~~~~~~~~~ 313 (341)
.|..+++++++.|..|+|||+++++..+.|++. +++....+...|.|
T Consensus 574 mFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSg 653 (1080)
T KOG1408|consen 574 MFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSG 653 (1080)
T ss_pred heehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCc
Confidence 444558899999999999999999999999864 25678889999999
Q ss_pred CEEEEEeCCCcEEEEEcCCCceeeeec
Q 019405 314 PIIASCGLDSYLRFWDIKTRQLLSAVC 340 (341)
Q Consensus 314 ~~l~s~~~dg~v~iwd~~~~~~~~~~~ 340 (341)
.+|++.+.|.++.++|..+|+|+.++|
T Consensus 654 iY~atScsdktl~~~Df~sgEcvA~m~ 680 (1080)
T KOG1408|consen 654 IYLATSCSDKTLCFVDFVSGECVAQMT 680 (1080)
T ss_pred cEEEEeecCCceEEEEeccchhhhhhc
Confidence 999999999999999999999999876
No 116
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=5.1e-24 Score=164.19 Aligned_cols=277 Identities=14% Similarity=0.200 Sum_probs=210.1
Q ss_pred eeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCC----CCc--c---
Q 019405 17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPL----NGD--L--- 87 (341)
Q Consensus 17 ~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~----~~~--~--- 87 (341)
+-+++.|.+-++|.++.. +++.+|.+|.++|+++.|.+.+. ++++++.|++-.||... ..+ .
T Consensus 163 ~gtASADhTA~iWs~Esg-----~CL~~Y~GH~GSVNsikfh~s~~----L~lTaSGD~taHIW~~av~~~vP~~~a~~~ 233 (481)
T KOG0300|consen 163 CGTASADHTARIWSLESG-----ACLATYTGHTGSVNSIKFHNSGL----LLLTASGDETAHIWKAAVNWEVPSNNAPSD 233 (481)
T ss_pred eeecccccceeEEeeccc-----cceeeecccccceeeEEeccccc----eEEEccCCcchHHHHHhhcCcCCCCCCCCC
Confidence 334566667789998887 77889999999999999987555 89999999999999721 100 0
Q ss_pred ---hheee---ccCC-----------------CCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecc
Q 019405 88 ---RVAIS---NAGD-----------------SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK 144 (341)
Q Consensus 88 ---~~~~~---~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~ 144 (341)
..+.. .+.. ..+.+|...+.+..|+.... .+++++.|.+..+||++.+.
T Consensus 234 hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~--------Q~vTaSWDRTAnlwDVEtge 305 (481)
T KOG0300|consen 234 HSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQ--------QMVTASWDRTANLWDVETGE 305 (481)
T ss_pred CCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcc--------eeeeeeccccceeeeeccCc
Confidence 00000 0000 01123455666667776666 89999999999999998665
Q ss_pred cccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCC-ceeeecCCCCCCccCccCCeeeeEEEEEe
Q 019405 145 VSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC-EKIWTAKPPPKNSLGIFTPTWFTSAAFLS 223 (341)
Q Consensus 145 ~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 223 (341)
.+.... .|....+.+.-+|..+++++.+.|.+.++||++.. ..+..|++|. ..|+++.|
T Consensus 306 --------~v~~Lt-GHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHt---------dtVTS~vF-- 365 (481)
T KOG0300|consen 306 --------VVNILT-GHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHT---------DTVTSVVF-- 365 (481)
T ss_pred --------eecccc-CcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccc---------cceeEEEE--
Confidence 333332 45667888888999999999999999999999843 3345566654 66999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeE-----Eec
Q 019405 224 IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGC-----FIG 298 (341)
Q Consensus 224 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~-----~~~ 298 (341)
. .+..+++|+.|.+|++||+++...|+.++.. .++++.++.+..+..|+.--.+..|++||+...+ +.. -++
T Consensus 366 ~-~dd~vVSgSDDrTvKvWdLrNMRsplATIRt-dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R-laRlPrtsRqg 442 (481)
T KOG0300|consen 366 N-TDDRVVSGSDDRTVKVWDLRNMRSPLATIRT-DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR-LARLPRTSRQG 442 (481)
T ss_pred e-cCCceeecCCCceEEEeeeccccCcceeeec-CCccceeEeecCCceEEeccCCceEEEEecCCCc-cccCCcccccc
Confidence 4 4568899999999999999998888888874 4689999999888899988888899999996433 333 346
Q ss_pred cccCceeEEEecCCCC--EEEEEeCCCcEEEEEcCCCc
Q 019405 299 KCSGSIRSIARHPTLP--IIASCGLDSYLRFWDIKTRQ 334 (341)
Q Consensus 299 ~~~~~i~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~ 334 (341)
| ..-|.+++|..+.+ -|++++.|..+.=|++....
T Consensus 443 H-rRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 443 H-RRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred c-ceeeeeeeccccCcccccccccccceeeeeEecccC
Confidence 6 78899999987665 58899999999999987643
No 117
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2.6e-23 Score=159.39 Aligned_cols=262 Identities=10% Similarity=0.120 Sum_probs=184.5
Q ss_pred CCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccccccccee
Q 019405 47 DPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL 126 (341)
Q Consensus 47 ~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 126 (341)
+|..-+.++.|.+.+. ++|+++.|++|+|||..+.........++ ..|++.+..+.|.++.-. ..+
T Consensus 11 ~h~DlihdVs~D~~GR----RmAtCSsDq~vkI~d~~~~s~~W~~Ts~W----rah~~Si~rV~WAhPEfG------qvv 76 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGR----RMATCSSDQTVKIWDSTSDSGTWSCTSSW----RAHDGSIWRVVWAHPEFG------QVV 76 (361)
T ss_pred CCcceeeeeeecccCc----eeeeccCCCcEEEEeccCCCCceEEeeeE----EecCCcEEEEEecCcccc------ceE
Confidence 4777788888776665 89999999999999975543332222211 136788999999877643 389
Q ss_pred EEEcccceeEEEEeeecccccccCCceEEEEEe-----ecCCceEEEEecC--CCCEEEEeeCCCeEEEEECCCCce---
Q 019405 127 LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV-----CASGTIAFSKVDI--SEKFSLFGGKGVEVNVWDLDKCEK--- 196 (341)
Q Consensus 127 ~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~-----~~~~~i~~~~~~~--~~~~l~~~~~d~~v~i~d~~~~~~--- 196 (341)
++++.|+++.||.=..... +..-+.|.. .....|+.+.|.| -|-.+|+++.||.|+||+.-..-.
T Consensus 77 A~cS~Drtv~iWEE~~~~~-----~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~ 151 (361)
T KOG2445|consen 77 ATCSYDRTVSIWEEQEKSE-----EAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQ 151 (361)
T ss_pred EEEecCCceeeeeeccccc-----ccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcccccc
Confidence 9999999999997432221 111122322 2356899999988 467899999999999998754221
Q ss_pred ---eeecCCCCCCccCccCCeeeeEEEEEecC-CCCEEEEEeCC-----CeEEEEEcCCCCc---eeEEEEecCCCeEEE
Q 019405 197 ---IWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTND-----HQVRLYDTSAQRR---PVMSFDFRETPIKAV 264 (341)
Q Consensus 197 ---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~d-----~~i~iwd~~~~~~---~~~~~~~~~~~v~~~ 264 (341)
..++...... .-.+.....|+.|+|+. ...+|+.|+.+ +.++||......+ .+..+..|..+|+++
T Consensus 152 W~Lq~Ei~~~~~p--p~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di 229 (361)
T KOG2445|consen 152 WTLQHEIQNVIDP--PGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDI 229 (361)
T ss_pred chhhhhhhhccCC--cccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceee
Confidence 1222210000 00123457788995432 23567777765 4789998765431 255667899999999
Q ss_pred EEcCCC----ceEEEEeCCCCEEEEECCCC--------------------eEEeEEeccccCceeEEEecCCCCEEEEEe
Q 019405 265 AEEPDS----FNIYIGNGSGDLASVDIRTG--------------------KLLGCFIGKCSGSIRSIARHPTLPIIASCG 320 (341)
Q Consensus 265 ~~~~~~----~~l~~g~~dg~i~iwd~~~~--------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 320 (341)
+|.|+- .+||+++.|| |+||.++.. +.+..+..| .+.|+.+.|+-.|..|++.|
T Consensus 230 ~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H-~~~VWrv~wNmtGtiLsStG 307 (361)
T KOG2445|consen 230 SWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDH-NGEVWRVRWNMTGTILSSTG 307 (361)
T ss_pred eeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCC-CCceEEEEEeeeeeEEeecC
Confidence 999953 6799999999 999998731 345556777 89999999999999999999
Q ss_pred CCCcEEEEEcC
Q 019405 321 LDSYLRFWDIK 331 (341)
Q Consensus 321 ~dg~v~iwd~~ 331 (341)
.||.||+|...
T Consensus 308 dDG~VRLWkan 318 (361)
T KOG2445|consen 308 DDGCVRLWKAN 318 (361)
T ss_pred CCceeeehhhh
Confidence 99999999754
No 118
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.93 E-value=6.9e-24 Score=187.23 Aligned_cols=271 Identities=13% Similarity=0.124 Sum_probs=202.8
Q ss_pred eccCCCCCceeEEEeccCCCCCceEEEEc--cCCeEEEeeCCCCc-chheee--ccCCC-CCCCCCCceeeEeeeecccc
Q 019405 44 RWGDPHSSNCVLAASIDDSQNDPLLAVAR--KNGLTDILNPLNGD-LRVAIS--NAGDS-GAQPEDDGIVGLHLFKRQRE 117 (341)
Q Consensus 44 ~~~~~~~~~~~~~~s~~~~~~~~~l~~~~--~dg~i~iw~~~~~~-~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~ 117 (341)
.|-.|.... .|+.|-+|+|..++||+ .|+.++||+.+.-- ...... ..... ....|.+.+.|+.|.+...
T Consensus 7 ~wv~H~~~~---IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~- 82 (942)
T KOG0973|consen 7 TWVNHNEKS---IFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGS- 82 (942)
T ss_pred cccccCCee---EEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCC-
Confidence 455555544 57777788888999999 89999999875310 000000 00001 1124667888888777766
Q ss_pred ccccccceeEEEcccceeEEEEeeecccc----cccCCceEEEEE-----eecCCceEEEEecCCCCEEEEeeCCCeEEE
Q 019405 118 ESSSRSRTLLTCTTKGKASMRSIEVTKVS----AESSCSTVKSWN-----VCASGTIAFSKVDISEKFSLFGGKGVEVNV 188 (341)
Q Consensus 118 ~~~~~~~~l~~~~~~g~~~i~~~~~~~~~----~~~~~~~v~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i 188 (341)
+|++|++|..+.||........ +......+.-|. ..|...|..+.|+|++.++++++.|++|.+
T Consensus 83 -------~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsVii 155 (942)
T KOG0973|consen 83 -------YLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVII 155 (942)
T ss_pred -------eEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEE
Confidence 9999999999999998751111 111122222232 247889999999999999999999999999
Q ss_pred EECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEec------CCCeE
Q 019405 189 WDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR------ETPIK 262 (341)
Q Consensus 189 ~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~------~~~v~ 262 (341)
||..+.+.+..+..|. ..|..+.| .|-|++|++-+.|++|++|+..+... .+.+..+ ..-..
T Consensus 156 wn~~tF~~~~vl~~H~---------s~VKGvs~--DP~Gky~ASqsdDrtikvwrt~dw~i-~k~It~pf~~~~~~T~f~ 223 (942)
T KOG0973|consen 156 WNAKTFELLKVLRGHQ---------SLVKGVSW--DPIGKYFASQSDDRTLKVWRTSDWGI-EKSITKPFEESPLTTFFL 223 (942)
T ss_pred Eccccceeeeeeeccc---------ccccceEE--CCccCeeeeecCCceEEEEEccccee-eEeeccchhhCCCcceee
Confidence 9999998888888865 56899999 99999999999999999999776432 4444433 23467
Q ss_pred EEEEcCCCceEEEEeC----CCCEEEEECCCCeEEeEEeccccCceeEEEecCC------C-------C----EEEEEeC
Q 019405 263 AVAEEPDSFNIYIGNG----SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPT------L-------P----IIASCGL 321 (341)
Q Consensus 263 ~~~~~~~~~~l~~g~~----dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~------~-------~----~l~s~~~ 321 (341)
.+.|||||++|++... -..+.|.+-.+.+.-..|-+| .+++.++.|+|. . . .+|+||.
T Consensus 224 RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH-~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSq 302 (942)
T KOG0973|consen 224 RLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGH-SAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQ 302 (942)
T ss_pred ecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecC-CCceEEEEeChHHhccccccCCccCCCcceEEEEEecC
Confidence 8999999999998653 345889998888888899999 889999999982 1 1 6889999
Q ss_pred CCcEEEEEcCCCceeee
Q 019405 322 DSYLRFWDIKTRQLLSA 338 (341)
Q Consensus 322 dg~v~iwd~~~~~~~~~ 338 (341)
|++|.||.....+++..
T Consensus 303 DrSlSVW~T~~~RPl~v 319 (942)
T KOG0973|consen 303 DRSLSVWNTALPRPLFV 319 (942)
T ss_pred CccEEEEecCCCCchhh
Confidence 99999999987777654
No 119
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.2e-23 Score=161.76 Aligned_cols=255 Identities=15% Similarity=0.169 Sum_probs=200.0
Q ss_pred eeecCCCCCceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCC
Q 019405 6 TLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG 85 (341)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~ 85 (341)
.+.+.++....+++|+.|.+|+++++... +-+..+-.|.+.++++.|.+..+.. .|++|+.||.|.+|+....
T Consensus 45 sitavAVs~~~~aSGssDetI~IYDm~k~-----~qlg~ll~HagsitaL~F~~~~S~s--hLlS~sdDG~i~iw~~~~W 117 (362)
T KOG0294|consen 45 SITALAVSGPYVASGSSDETIHIYDMRKR-----KQLGILLSHAGSITALKFYPPLSKS--HLLSGSDDGHIIIWRVGSW 117 (362)
T ss_pred ceeEEEecceeEeccCCCCcEEEEeccch-----hhhcceeccccceEEEEecCCcchh--heeeecCCCcEEEEEcCCe
Confidence 34555666677889999999999999987 3334455689999999999877532 6999999999999999998
Q ss_pred cchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCce
Q 019405 86 DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTI 165 (341)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i 165 (341)
.++..++.| .+.++.+...+..+ .-++.+.|+.++.|++-.+..+ .+.++.+ .-
T Consensus 118 ~~~~slK~H--------~~~Vt~lsiHPS~K--------LALsVg~D~~lr~WNLV~Gr~a--------~v~~L~~--~a 171 (362)
T KOG0294|consen 118 ELLKSLKAH--------KGQVTDLSIHPSGK--------LALSVGGDQVLRTWNLVRGRVA--------FVLNLKN--KA 171 (362)
T ss_pred EEeeeeccc--------ccccceeEecCCCc--------eEEEEcCCceeeeehhhcCccc--------eeeccCC--cc
Confidence 888888874 46688888888877 8899999999999998766532 2333332 23
Q ss_pred EEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcC
Q 019405 166 AFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS 245 (341)
Q Consensus 166 ~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~ 245 (341)
..+.|+|.|.+++.++.+ .|-+|.+++......+..+ ..+.++.|. ++..|++|..|+.|++||..
T Consensus 172 t~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~----------~r~l~~~~l---~~~~L~vG~d~~~i~~~D~d 237 (362)
T KOG0294|consen 172 TLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENP----------KRILCATFL---DGSELLVGGDNEWISLKDTD 237 (362)
T ss_pred eeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhcc----------ccceeeeec---CCceEEEecCCceEEEeccC
Confidence 348999999999988877 6999999887776666554 336777773 67899999999999999998
Q ss_pred CCCceeEEEEecCCCeEEEEE--cCCCceEEEEeCCCCEEEEECCCC-----eEEeEEeccccCceeEEEec
Q 019405 246 AQRRPVMSFDFRETPIKAVAE--EPDSFNIYIGNGSGDLASVDIRTG-----KLLGCFIGKCSGSIRSIARH 310 (341)
Q Consensus 246 ~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~g~~dg~i~iwd~~~~-----~~~~~~~~~~~~~i~~~~~~ 310 (341)
... +...+.+|...|.++.+ .|++.+|++++.||.|++||++.. +++..+.. ...++|+...
T Consensus 238 s~~-~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~--~~RltCl~~~ 306 (362)
T KOG0294|consen 238 SDT-PLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNT--NVRLTCLRVK 306 (362)
T ss_pred CCc-cceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEeec--CCccceeeeh
Confidence 744 68999999999999884 578899999999999999999865 34444433 4556666543
No 120
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=8.2e-24 Score=177.27 Aligned_cols=232 Identities=14% Similarity=0.165 Sum_probs=189.9
Q ss_pred eEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccc
Q 019405 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS 146 (341)
Q Consensus 67 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~ 146 (341)
.|++|. ...|++|+..+++....... +++.++++.|..... .|++|..+|.+.|||+...+
T Consensus 190 ~laVal-g~~vylW~~~s~~v~~l~~~--------~~~~vtSv~ws~~G~--------~LavG~~~g~v~iwD~~~~k-- 250 (484)
T KOG0305|consen 190 VLAVAL-GQSVYLWSASSGSVTELCSF--------GEELVTSVKWSPDGS--------HLAVGTSDGTVQIWDVKEQK-- 250 (484)
T ss_pred eEEEEe-cceEEEEecCCCceEEeEec--------CCCceEEEEECCCCC--------EEEEeecCCeEEEEehhhcc--
Confidence 477776 56899999998886555444 247788888877766 99999999999999987655
Q ss_pred cccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeee-cCCCCCCccCccCCeeeeEEEEEecC
Q 019405 147 AESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT-AKPPPKNSLGIFTPTWFTSAAFLSID 225 (341)
Q Consensus 147 ~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~ 225 (341)
.++.....|...|-+++|+ +..+.+|+.|+.|..+|++..+.... +..| ...|..+.| ++
T Consensus 251 ------~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H---------~qeVCgLkw--s~ 311 (484)
T KOG0305|consen 251 ------KTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGH---------RQEVCGLKW--SP 311 (484)
T ss_pred ------ccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcc---------cceeeeeEE--CC
Confidence 4455555577899999998 67899999999999999998766555 4443 356999999 89
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCC-CceEEEEe--CCCCEEEEECCCCeEEeEEeccccC
Q 019405 226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPD-SFNIYIGN--GSGDLASVDIRTGKLLGCFIGKCSG 302 (341)
Q Consensus 226 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~g~--~dg~i~iwd~~~~~~~~~~~~~~~~ 302 (341)
++.++|+|+.|+.+.|||... ..+...+..|...|.+++|+|- ..+||+|+ .|+.|++||..+++.+..+.. .+
T Consensus 312 d~~~lASGgnDN~~~Iwd~~~-~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt--gs 388 (484)
T KOG0305|consen 312 DGNQLASGGNDNVVFIWDGLS-PEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT--GS 388 (484)
T ss_pred CCCeeccCCCccceEeccCCC-ccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc--CC
Confidence 999999999999999999965 4468889999999999999994 46788765 589999999999999998876 57
Q ss_pred ceeEEEecCCCCEEEEEe--CCCcEEEEEcCCCceeeee
Q 019405 303 SIRSIARHPTLPIIASCG--LDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 303 ~i~~~~~~~~~~~l~s~~--~dg~v~iwd~~~~~~~~~~ 339 (341)
.|.+|.|++..+-|+++. .++.|.||+..+.+.+..+
T Consensus 389 QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l 427 (484)
T KOG0305|consen 389 QVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAEL 427 (484)
T ss_pred ceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeee
Confidence 899999999987665543 5678999999987776654
No 121
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2e-24 Score=184.02 Aligned_cols=270 Identities=14% Similarity=0.160 Sum_probs=195.1
Q ss_pred CCCeEEEEEecCccCccceeeeccCCCCCce---eEEEeccCCCCCceEEEEccCCeEEEeeCCC---CcchheeeccCC
Q 019405 23 LGLIKVIEARGEHGGVPKVVERWGDPHSSNC---VLAASIDDSQNDPLLAVARKNGLTDILNPLN---GDLRVAISNAGD 96 (341)
Q Consensus 23 ~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~---~~~~~~~~~~~~ 96 (341)
.-.++++.+.... -..++...++..+..-+ -|.+. .-..++|||++.+|.|.+||+.. .+.+..+..
T Consensus 59 rs~lklyai~~~~-~~~~~~~~~k~kqn~~~S~~DVkW~---~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~E--- 131 (839)
T KOG0269|consen 59 RSLLKLYAINPND-FSEKCNHRFKTKQNKFYSAADVKWG---QLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNE--- 131 (839)
T ss_pred ccceeeEeeCccc-CCcceeeecccccceeeehhhcccc---cchhhhheeecCCCcEEEEecCccccchhhhHhhh---
Confidence 3344666666552 22234444443332222 23343 22345899999999999999976 444455555
Q ss_pred CCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecC-CCC
Q 019405 97 SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEK 175 (341)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~-~~~ 175 (341)
|...+.++.|...... .|++|+.||.+++||+...+ ....+.- ....|..++|+| .+.
T Consensus 132 -----H~Rs~~~ldfh~tep~-------iliSGSQDg~vK~~DlR~~~--------S~~t~~~-nSESiRDV~fsp~~~~ 190 (839)
T KOG0269|consen 132 -----HERSANKLDFHSTEPN-------ILISGSQDGTVKCWDLRSKK--------SKSTFRS-NSESIRDVKFSPGYGN 190 (839)
T ss_pred -----hccceeeeeeccCCcc-------EEEecCCCceEEEEeeeccc--------ccccccc-cchhhhceeeccCCCc
Confidence 5577888888877665 99999999999999998654 2222222 457899999998 467
Q ss_pred EEEEeeCCCeEEEEECCCCc-eeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCC-ceeEE
Q 019405 176 FSLFGGKGVEVNVWDLDKCE-KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR-RPVMS 253 (341)
Q Consensus 176 ~l~~~~~d~~v~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~ 253 (341)
.++++...|.+.+||++... ....+..| .++|.|+.| +|+..+||+|+.|+.|+|||+.+.+ .++.+
T Consensus 191 ~F~s~~dsG~lqlWDlRqp~r~~~k~~AH---------~GpV~c~nw--hPnr~~lATGGRDK~vkiWd~t~~~~~~~~t 259 (839)
T KOG0269|consen 191 KFASIHDSGYLQLWDLRQPDRCEKKLTAH---------NGPVLCLNW--HPNREWLATGGRDKMVKIWDMTDSRAKPKHT 259 (839)
T ss_pred eEEEecCCceEEEeeccCchhHHHHhhcc---------cCceEEEee--cCCCceeeecCCCccEEEEeccCCCccceeE
Confidence 89999999999999998643 34445543 477999999 7899999999999999999998643 23444
Q ss_pred EEecCCCeEEEEEcCCCc-eEEEEe--CCCCEEEEECCCCe-EEeEEeccccCceeEEEecC-CCCEEEEEeCCCcEEEE
Q 019405 254 FDFRETPIKAVAEEPDSF-NIYIGN--GSGDLASVDIRTGK-LLGCFIGKCSGSIRSIARHP-TLPIIASCGLDSYLRFW 328 (341)
Q Consensus 254 ~~~~~~~v~~~~~~~~~~-~l~~g~--~dg~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~dg~v~iw 328 (341)
+. ...++.+++|-|..+ +|++++ .|-.|+|||++..- +..++..| ...++.++|.. |...|.+++.||.|...
T Consensus 260 In-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH-~~~vt~i~W~~~d~~~l~s~sKD~tv~qh 337 (839)
T KOG0269|consen 260 IN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEH-TDSVTGIAWDSGDRINLWSCSKDGTVLQH 337 (839)
T ss_pred Ee-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeecc-CccccceeccCCCceeeEeecCccHHHHh
Confidence 44 347899999999774 455555 47789999998653 45667777 89999999966 44589999999998766
Q ss_pred EcCCC
Q 019405 329 DIKTR 333 (341)
Q Consensus 329 d~~~~ 333 (341)
.++++
T Consensus 338 ~~kna 342 (839)
T KOG0269|consen 338 LFKNA 342 (839)
T ss_pred hhhcc
Confidence 65543
No 122
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.7e-22 Score=147.62 Aligned_cols=252 Identities=15% Similarity=0.147 Sum_probs=189.3
Q ss_pred CCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCC---------CCCCCCceeeEeeeeccccc
Q 019405 48 PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSG---------AQPEDDGIVGLHLFKRQREE 118 (341)
Q Consensus 48 ~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~ 118 (341)
....+..++|-+.+. +.++|+...++||-....-.. ....|.... ...|.+.|.|.+|.+...
T Consensus 31 dsqairav~fhp~g~----lyavgsnskt~ric~yp~l~~--~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ge-- 102 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGG----LYAVGSNSKTFRICAYPALID--LRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGE-- 102 (350)
T ss_pred chhheeeEEecCCCc----eEEeccCCceEEEEccccccC--cccccccccCCCeEEeeeccccCccEEEEEecCccC--
Confidence 445677777665554 899999999999976542111 111111111 123678899998887777
Q ss_pred cccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecC----CCCEEEEee-CCCeEEEEECCC
Q 019405 119 SSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI----SEKFSLFGG-KGVEVNVWDLDK 193 (341)
Q Consensus 119 ~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~----~~~~l~~~~-~d~~v~i~d~~~ 193 (341)
.+++++.|..+++...+..... ..+.-..+++ |.+.|..++|-. .+.+|++++ .|..|++-|..+
T Consensus 103 ------liatgsndk~ik~l~fn~dt~~---~~g~dle~nm-hdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~ 172 (350)
T KOG0641|consen 103 ------LIATGSNDKTIKVLPFNADTCN---ATGHDLEFNM-HDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGR 172 (350)
T ss_pred ------eEEecCCCceEEEEeccccccc---ccCcceeeee-cCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCC
Confidence 9999999999998876543221 2223334454 567888888843 345677655 466788888889
Q ss_pred CceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEe--c-----CCCeEEEEE
Q 019405 194 CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF--R-----ETPIKAVAE 266 (341)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~-----~~~v~~~~~ 266 (341)
++....+.+|... |.++- +-++-.+++|+.|.+|++||++-..+ +..+.. | .+.|.+++.
T Consensus 173 g~~~~a~sghtgh---------ilaly---swn~~m~~sgsqdktirfwdlrv~~~-v~~l~~~~~~~glessavaav~v 239 (350)
T KOG0641|consen 173 GQGFHALSGHTGH---------ILALY---SWNGAMFASGSQDKTIRFWDLRVNSC-VNTLDNDFHDGGLESSAVAAVAV 239 (350)
T ss_pred CCcceeecCCccc---------EEEEE---EecCcEEEccCCCceEEEEeeeccce-eeeccCcccCCCcccceeEEEEE
Confidence 9998888887643 54442 23788999999999999999997554 555532 2 357999999
Q ss_pred cCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcC
Q 019405 267 EPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331 (341)
Q Consensus 267 ~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~ 331 (341)
.|.|++|++|-.|....+||++.++.++.+..| ...|.++.|+|...++++++.|..|++=|++
T Consensus 240 dpsgrll~sg~~dssc~lydirg~r~iq~f~ph-sadir~vrfsp~a~yllt~syd~~ikltdlq 303 (350)
T KOG0641|consen 240 DPSGRLLASGHADSSCMLYDIRGGRMIQRFHPH-SADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ 303 (350)
T ss_pred CCCcceeeeccCCCceEEEEeeCCceeeeeCCC-ccceeEEEeCCCceEEEEecccceEEEeecc
Confidence 999999999999999999999999999999998 9999999999999999999999999999986
No 123
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=4.9e-26 Score=192.41 Aligned_cols=228 Identities=20% Similarity=0.308 Sum_probs=188.4
Q ss_pred eEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccc
Q 019405 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS 146 (341)
Q Consensus 67 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~ 146 (341)
+++....+-.+++|+.+...... ..+.++..-.... .++.|+.+..+-+|.+....
T Consensus 6 ~~m~~~~~t~Lr~~~~~~~~~hs--------------aav~~lk~~~s~r--------~~~~Gg~~~k~~L~~i~kp~-- 61 (825)
T KOG0267|consen 6 FLMKTKRATKLRVWDTREFVAHS--------------AAVGCLKIRKSSR--------SLVTGGEDEKVNLWAIGKPN-- 61 (825)
T ss_pred ccceeeeeeccccccchhhhhhh--------------hhhceeeeeccce--------eeccCCCceeeccccccCCc--
Confidence 45555566778888875432222 2333444422222 78899999999999876433
Q ss_pred cccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCC
Q 019405 147 AESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD 226 (341)
Q Consensus 147 ~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 226 (341)
.+.-+. .|..+|.++.|+++..+|++|+.+|+|++||++.++.++.+.++. ..+.++.| +|-
T Consensus 62 ------~i~S~~-~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~---------~~~~sv~f--~P~ 123 (825)
T KOG0267|consen 62 ------AITSLT-GHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHL---------LNITSVDF--HPY 123 (825)
T ss_pred ------hhheee-ccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccc---------cCcceeee--ccc
Confidence 222233 467899999999999999999999999999999999888888875 44788889 889
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeE
Q 019405 227 HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRS 306 (341)
Q Consensus 227 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~ 306 (341)
+.+++.|+.|+.+++||.+... +.+.+.+|...+..++|+|+|++++.|+.|..++|||+..|+.+..|..| +..+..
T Consensus 124 ~~~~a~gStdtd~~iwD~Rk~G-c~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~-e~~v~s 201 (825)
T KOG0267|consen 124 GEFFASGSTDTDLKIWDIRKKG-CSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSH-EGKVQS 201 (825)
T ss_pred eEEeccccccccceehhhhccC-ceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccc-cccccc
Confidence 9999999999999999999644 48889999999999999999999999999999999999999999999998 999999
Q ss_pred EEecCCCCEEEEEeCCCcEEEEEcCCCceeee
Q 019405 307 IARHPTLPIIASCGLDSYLRFWDIKTRQLLSA 338 (341)
Q Consensus 307 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 338 (341)
+.|+|..-++++||.|++|++||+++.+.+..
T Consensus 202 le~hp~e~Lla~Gs~d~tv~f~dletfe~I~s 233 (825)
T KOG0267|consen 202 LEFHPLEVLLAPGSSDRTVRFWDLETFEVISS 233 (825)
T ss_pred cccCchhhhhccCCCCceeeeeccceeEEeec
Confidence 99999999999999999999999998776643
No 124
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.93 E-value=2.1e-23 Score=174.33 Aligned_cols=302 Identities=13% Similarity=0.156 Sum_probs=207.5
Q ss_pred CCCCC--ceeeeecCCCCeEEEEEecCccC-ccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCc
Q 019405 10 PGCPP--LRALTFDSLGLIKVIEARGEHGG-VPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD 86 (341)
Q Consensus 10 ~~~~~--~~~~~~~~~g~i~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 86 (341)
+.+|. ..+..++++|.|.+++....... ...-+..|..|...+.-+.+.+... .|++++.|.++++||+.+++
T Consensus 58 s~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~----~lVsasGDsT~r~Wdvk~s~ 133 (720)
T KOG0321|consen 58 SAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGES----LLVSASGDSTIRPWDVKTSR 133 (720)
T ss_pred cCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCce----eEEEccCCceeeeeeeccce
Confidence 34554 34677899999999887765211 0111345667889988888777444 79999999999999999888
Q ss_pred chhe--eeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeeccc---------ccccC-----
Q 019405 87 LRVA--ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV---------SAESS----- 150 (341)
Q Consensus 87 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~---------~~~~~----- 150 (341)
+... +.+ |...+-++++.+.+.. .|++|+.||.+.|||+..... .++..
T Consensus 134 l~G~~~~~G--------H~~SvkS~cf~~~n~~-------vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~pt 198 (720)
T KOG0321|consen 134 LVGGRLNLG--------HTGSVKSECFMPTNPA-------VFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPT 198 (720)
T ss_pred eecceeecc--------cccccchhhhccCCCc-------ceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCC
Confidence 7766 444 4566777777666554 899999999999999876541 01111
Q ss_pred -----CceEEEEEeecCCceEE---EEecCCCCEEEEeeC-CCeEEEEECCCCceeeecCCCCCCccCcc--CCeeeeEE
Q 019405 151 -----CSTVKSWNVCASGTIAF---SKVDISEKFSLFGGK-GVEVNVWDLDKCEKIWTAKPPPKNSLGIF--TPTWFTSA 219 (341)
Q Consensus 151 -----~~~v~~~~~~~~~~i~~---~~~~~~~~~l~~~~~-d~~v~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~ 219 (341)
...++.|.+. ...|.. +-+..|...||+++. |+.|++||+++..............+... ....+.++
T Consensus 199 pskp~~kr~~k~kA~-s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL 277 (720)
T KOG0321|consen 199 PSKPLKKRIRKWKAA-SNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNL 277 (720)
T ss_pred CCchhhccccccccc-cCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEE
Confidence 1123334332 233444 455568889998887 99999999997654443332211111110 11235566
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEEcCCCC-ceeEEEEecCCC--eEEEEEcCCCceEEEEeCCCCEEEEECCCCeE-EeE
Q 019405 220 AFLSIDDHRKFVAGTNDHQVRLYDTSAQR-RPVMSFDFRETP--IKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL-LGC 295 (341)
Q Consensus 220 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~--v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~-~~~ 295 (341)
.. ...|.+|.+.+.|+.|+.|++.... .|+..+.++... -..-..+|++.+|++|+.|...++|.+.+.+. ...
T Consensus 278 ~l--DssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~ 355 (720)
T KOG0321|consen 278 IL--DSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPAL 355 (720)
T ss_pred Ee--cCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhh
Confidence 66 6778888888889999999998743 345555544221 11234689999999999999999999987654 455
Q ss_pred EeccccCceeEEEecCCC-CEEEEEeCCCcEEEEEcCCCc
Q 019405 296 FIGKCSGSIRSIARHPTL-PIIASCGLDSYLRFWDIKTRQ 334 (341)
Q Consensus 296 ~~~~~~~~i~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~~ 334 (341)
+.+| .-.|++++|.|.. .-+++++.|..+++|++..+-
T Consensus 356 l~Gh-t~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 356 LLGH-TREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred hhCc-ceEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence 6677 8899999999854 357777999999999997653
No 125
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=3.9e-24 Score=177.46 Aligned_cols=263 Identities=13% Similarity=0.142 Sum_probs=186.7
Q ss_pred eeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccc
Q 019405 43 ERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSR 122 (341)
Q Consensus 43 ~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (341)
..|.+|.+.|.+++..+. |.+|++|+.||+||||.+.+|.++.++..- +.|.|++|.+....
T Consensus 394 lvyrGHtg~Vr~iSvdp~----G~wlasGsdDGtvriWEi~TgRcvr~~~~d---------~~I~~vaw~P~~~~----- 455 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPS----GEWLASGSDDGTVRIWEIATGRCVRTVQFD---------SEIRSVAWNPLSDL----- 455 (733)
T ss_pred eeEeccCCeEEEEEecCC----cceeeecCCCCcEEEEEeecceEEEEEeec---------ceeEEEEecCCCCc-----
Confidence 457789999998886654 559999999999999999999999998862 56777777665543
Q ss_pred cceeEEEcccceeEEEEeeecccc----------c----ccCCceEEEEEe--------------ecCCceEEEEecCCC
Q 019405 123 SRTLLTCTTKGKASMRSIEVTKVS----------A----ESSCSTVKSWNV--------------CASGTIAFSKVDISE 174 (341)
Q Consensus 123 ~~~l~~~~~~g~~~i~~~~~~~~~----------~----~~~~~~v~~~~~--------------~~~~~i~~~~~~~~~ 174 (341)
.+++++.+..+.|.+..++... + ...+..+-.|.- .+...|..+.|+..|
T Consensus 456 --~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG 533 (733)
T KOG0650|consen 456 --CVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG 533 (733)
T ss_pred --eeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC
Confidence 4555555555666665544210 0 112223334432 234566677777777
Q ss_pred CEEEEeeCC---CeEEEEECCCCceeeec----------CCCCCCc---------c-------------CccCCeeeeEE
Q 019405 175 KFSLFGGKG---VEVNVWDLDKCEKIWTA----------KPPPKNS---------L-------------GIFTPTWFTSA 219 (341)
Q Consensus 175 ~~l~~~~~d---~~v~i~d~~~~~~~~~~----------~~~~~~~---------~-------------~~~~~~~v~~~ 219 (341)
.+|++...+ ..|.|+++........| ..|.... . .+....+|..+
T Consensus 534 DYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~m 613 (733)
T KOG0650|consen 534 DYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSM 613 (733)
T ss_pred ceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeee
Confidence 777765432 34666666532211100 0010000 0 01123688999
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECC------CC---
Q 019405 220 AFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR------TG--- 290 (341)
Q Consensus 220 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~------~~--- 290 (341)
+. +|.|..|+.++.|+.+..||+.-...|.+.+..|...+++++|++.-.++++|+.||++.+|.-. ..
T Consensus 614 si--hp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpli 691 (733)
T KOG0650|consen 614 SI--HPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLI 691 (733)
T ss_pred ee--cCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCce
Confidence 99 78999999999999999999998878899999999999999999999999999999999998532 11
Q ss_pred eEEeEEeccccCc----eeEEEecCCCCEEEEEeCCCcEEEE
Q 019405 291 KLLGCFIGKCSGS----IRSIARHPTLPIIASCGLDSYLRFW 328 (341)
Q Consensus 291 ~~~~~~~~~~~~~----i~~~~~~~~~~~l~s~~~dg~v~iw 328 (341)
-++..+++| ... |....|||...+|++++.||+|++|
T Consensus 692 VPlK~L~gH-~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 692 VPLKRLRGH-EKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred EeeeeccCc-eeecccceEeecccCCCceEEecCCCceEEee
Confidence 246677787 443 8888999999999999999999998
No 126
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.1e-23 Score=168.83 Aligned_cols=246 Identities=15% Similarity=0.157 Sum_probs=179.9
Q ss_pred CCCceEEEEccCCeEEEeeCCCCcc-hhee------------eccCCCCCCCCCCceeeEeeeeccccccccccceeEEE
Q 019405 63 QNDPLLAVARKNGLTDILNPLNGDL-RVAI------------SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC 129 (341)
Q Consensus 63 ~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (341)
..|+|+|.|+.|..|.|||+.=... +..+ ........+.|.+.+..+.|...-.+ .|++|
T Consensus 190 ~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~n-------VLaSg 262 (463)
T KOG0270|consen 190 GAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRN-------VLASG 262 (463)
T ss_pred CCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccce-------eEEec
Confidence 3467999999999999999862111 1111 01112223456677777777654443 99999
Q ss_pred cccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCC-CCEEEEeeCCCeEEEEECCC---CceeeecCCCCC
Q 019405 130 TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDK---CEKIWTAKPPPK 205 (341)
Q Consensus 130 ~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~v~i~d~~~---~~~~~~~~~~~~ 205 (341)
+.|.++++||++..+. ..... .+++.|.+++|+|. ..+|++|+.|++|.+.|.+. ....+.+.
T Consensus 263 saD~TV~lWD~~~g~p--------~~s~~-~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~---- 329 (463)
T KOG0270|consen 263 SADKTVKLWDVDTGKP--------KSSIT-HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFD---- 329 (463)
T ss_pred CCCceEEEEEcCCCCc--------ceehh-hcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEec----
Confidence 9999999999987653 22322 57889999999985 57899999999999999984 22223332
Q ss_pred CccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCC-ceEEEEeCCCCEEE
Q 019405 206 NSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLAS 284 (341)
Q Consensus 206 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~i 284 (341)
+.|..++|. +.....++++..||+|+-+|+|....++.+++.|.++|.++++++.- .++++++.|+.|++
T Consensus 330 --------g~VEkv~w~-~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vkl 400 (463)
T KOG0270|consen 330 --------GEVEKVAWD-PHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKL 400 (463)
T ss_pred --------cceEEEEec-CCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEE
Confidence 448889995 23455677888999999999999878899999999999999998755 57889999999999
Q ss_pred EECCCCeE--EeEEeccccCceeEEEecCCCC-EEEEEeCCCcEEEEEcCCCceeee
Q 019405 285 VDIRTGKL--LGCFIGKCSGSIRSIARHPTLP-IIASCGLDSYLRFWDIKTRQLLSA 338 (341)
Q Consensus 285 wd~~~~~~--~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~ 338 (341)
|++..... +..-... -+...|.++.|+-. +++.|+..+.++|||+.+...+.+
T Consensus 401 w~~~~~~~~~v~~~~~~-~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~k 456 (463)
T KOG0270|consen 401 WKFDVDSPKSVKEHSFK-LGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVRK 456 (463)
T ss_pred EeecCCCCccccccccc-ccceeecccCCCcceEEEecCccceEEEeecccChhHHH
Confidence 99874332 2111111 23466777888766 677888888899999998776554
No 127
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.92 E-value=3.4e-23 Score=160.11 Aligned_cols=287 Identities=13% Similarity=0.172 Sum_probs=209.1
Q ss_pred eeeeecCCCCeEEEEEecCccCccceeeeccC--CCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeec
Q 019405 16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGD--PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN 93 (341)
Q Consensus 16 ~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 93 (341)
.+++......+.+++.... +..++++++.. ++..-+.++++.+.....++||+|+.-|.|+|.|+.++++...+.+
T Consensus 56 ~vfatvG~~rvtiy~c~~d--~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~g 133 (385)
T KOG1034|consen 56 QVFATVGGNRVTIYECPGD--GGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRG 133 (385)
T ss_pred ceEEEeCCcEEEEEEECCc--cceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceec
Confidence 3444444455666666554 33345566543 6667777888888776678999999999999999999999998887
Q ss_pred cCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEe--ecCCceEEEEec
Q 019405 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV--CASGTIAFSKVD 171 (341)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~--~~~~~i~~~~~~ 171 (341)
|+..|..+.+.+...+ +++++++|+.+++|+++... .+.++-- .|...|.+++|+
T Consensus 134 --------hG~sINeik~~p~~~q-------lvls~SkD~svRlwnI~~~~--------Cv~VfGG~egHrdeVLSvD~~ 190 (385)
T KOG1034|consen 134 --------HGGSINEIKFHPDRPQ-------LVLSASKDHSVRLWNIQTDV--------CVAVFGGVEGHRDEVLSVDFS 190 (385)
T ss_pred --------cCccchhhhcCCCCCc-------EEEEecCCceEEEEeccCCe--------EEEEecccccccCcEEEEEEc
Confidence 4577888888777654 89999999999999998544 6666643 356789999999
Q ss_pred CCCCEEEEeeCCCeEEEEECCCCceeee---------------cCCCCCCc----cCccCCeeeeEEEEEecCCCCEEEE
Q 019405 172 ISEKFSLFGGKGVEVNVWDLDKCEKIWT---------------AKPPPKNS----LGIFTPTWFTSAAFLSIDDHRKFVA 232 (341)
Q Consensus 172 ~~~~~l~~~~~d~~v~i~d~~~~~~~~~---------------~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~l~~ 232 (341)
+++.+|++++.|.+|++|++...+.... ++...... ..--|.++|.|+.| -|+++++
T Consensus 191 ~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw----~gd~ilS 266 (385)
T KOG1034|consen 191 LDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW----FGDFILS 266 (385)
T ss_pred CCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH----Hhhheee
Confidence 9999999999999999999984322111 11111100 11226678888888 3689999
Q ss_pred EeCCCeEEEEEcCCCCc-------------eeEEEEecCCCeEEEEE--cCCCceEEEEeCCCCEEEEECCCCeEEe--E
Q 019405 233 GTNDHQVRLYDTSAQRR-------------PVMSFDFRETPIKAVAE--EPDSFNIYIGNGSGDLASVDIRTGKLLG--C 295 (341)
Q Consensus 233 ~~~d~~i~iwd~~~~~~-------------~~~~~~~~~~~v~~~~~--~~~~~~l~~g~~dg~i~iwd~~~~~~~~--~ 295 (341)
-+-++.|..|..-..+. .+..+......|+.+.| .|-++.||.|...|.|++||++..++.. +
T Consensus 267 kscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~tt 346 (385)
T KOG1034|consen 267 KSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTT 346 (385)
T ss_pred cccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCce
Confidence 88899999998722111 12233334455666554 6778999999999999999998765521 1
Q ss_pred Ee-ccccCceeEEEecCCCCEEEEEeCCCcEEEEEcC
Q 019405 296 FI-GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331 (341)
Q Consensus 296 ~~-~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~ 331 (341)
+. ......|...+|+.|+.+|+..+.|++|.-||..
T Consensus 347 l~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 347 LTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 11 1124689999999999999999999999999864
No 128
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=2.7e-24 Score=175.06 Aligned_cols=250 Identities=14% Similarity=0.111 Sum_probs=194.9
Q ss_pred CCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCC---cchheeeccCCCCCCCCCCceeeEeeeeccccccccccc
Q 019405 48 PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG---DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSR 124 (341)
Q Consensus 48 ~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (341)
|..-|..++.|.... ++.||+ .|-|+|||+... ..+..+... .-+..+.+..+++...
T Consensus 418 HGEvVcAvtIS~~tr----hVyTgG-kgcVKVWdis~pg~k~PvsqLdcl------~rdnyiRSckL~pdgr-------- 478 (705)
T KOG0639|consen 418 HGEVVCAVTISNPTR----HVYTGG-KGCVKVWDISQPGNKSPVSQLDCL------NRDNYIRSCKLLPDGR-------- 478 (705)
T ss_pred cCcEEEEEEecCCcc----eeEecC-CCeEEEeeccCCCCCCcccccccc------CcccceeeeEecCCCc--------
Confidence 666677777776555 688887 789999999642 122222221 1234566666666666
Q ss_pred eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCC
Q 019405 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP 204 (341)
Q Consensus 125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~ 204 (341)
.|++|++-.++.|||+..... .|+.--.......+.++++||.+..+++..||.|.|||+.+...++.|++|.
T Consensus 479 tLivGGeastlsiWDLAapTp-------rikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGht 551 (705)
T KOG0639|consen 479 TLIVGGEASTLSIWDLAAPTP-------RIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT 551 (705)
T ss_pred eEEeccccceeeeeeccCCCc-------chhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCC
Confidence 899999999999999864321 2222111122457788999999999999999999999999999999999875
Q ss_pred CCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEE
Q 019405 205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLAS 284 (341)
Q Consensus 205 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~i 284 (341)
..+.|+.. +++|..|.+|+-|++||.||++++.+ ++... ..+.|.++.++|.+.+|++|-.++.+.+
T Consensus 552 ---------DGascIdi--s~dGtklWTGGlDntvRcWDlregrq-lqqhd-F~SQIfSLg~cP~~dWlavGMens~vev 618 (705)
T KOG0639|consen 552 ---------DGASCIDI--SKDGTKLWTGGLDNTVRCWDLREGRQ-LQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEV 618 (705)
T ss_pred ---------CCceeEEe--cCCCceeecCCCccceeehhhhhhhh-hhhhh-hhhhheecccCCCccceeeecccCcEEE
Confidence 66899999 89999999999999999999998765 43333 3467999999999999999999999999
Q ss_pred EECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeee
Q 019405 285 VDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSA 338 (341)
Q Consensus 285 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 338 (341)
.... +...+.+..| ++-|.++.|.+.|+++++.+.|..+..|.+.-|..+..
T Consensus 619 lh~s-kp~kyqlhlh-eScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFq 670 (705)
T KOG0639|consen 619 LHTS-KPEKYQLHLH-ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ 670 (705)
T ss_pred EecC-Cccceeeccc-ccEEEEEEecccCceeeecCchhhhhhccCccccceee
Confidence 8875 4445556666 89999999999999999999999999999988876654
No 129
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=5.7e-23 Score=156.77 Aligned_cols=214 Identities=9% Similarity=0.091 Sum_probs=161.9
Q ss_pred CCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcch-h--eeeccCC----CCCCCCCCceeeEeeeecccccc
Q 019405 47 DPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR-V--AISNAGD----SGAQPEDDGIVGLHLFKRQREES 119 (341)
Q Consensus 47 ~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~-~--~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 119 (341)
.|.++|+.+..-+ ..|+|+++|+.||.|.|||+++.... . .+..+.. .....|.-.|..+.|++.+..
T Consensus 41 ~HgGsvNsL~id~---tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG-- 115 (397)
T KOG4283|consen 41 PHGGSVNSLQIDL---TEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG-- 115 (397)
T ss_pred cCCCccceeeecc---ccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc--
Confidence 4778888777554 34579999999999999999864311 0 0111111 111235567888999998774
Q ss_pred ccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCC---CCEEEEeeCCCeEEEEECCCCce
Q 019405 120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS---EKFSLFGGKGVEVNVWDLDKCEK 196 (341)
Q Consensus 120 ~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~---~~~l~~~~~d~~v~i~d~~~~~~ 196 (341)
.+.+++.|+++++||.+... ....|.. ++.|.+-+++|- ..++|+|..+-.|++-|+..|..
T Consensus 116 -----mFtssSFDhtlKVWDtnTlQ--------~a~~F~m--e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~ 180 (397)
T KOG4283|consen 116 -----MFTSSSFDHTLKVWDTNTLQ--------EAVDFKM--EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF 180 (397)
T ss_pred -----eeecccccceEEEeecccce--------eeEEeec--CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc
Confidence 89999999999999987544 4444544 567888888873 45788899999999999999999
Q ss_pred eeecCCCCCCccCccCCeeeeEEEEEecCCCC-EEEEEeCCCeEEEEEcCCCCceeEEE--------------EecCCCe
Q 019405 197 IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQVRLYDTSAQRRPVMSF--------------DFRETPI 261 (341)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~--------------~~~~~~v 261 (341)
...+.+|. ..|.++.| +|... .|++|+.||.|++||++........+ ..|.+.+
T Consensus 181 sH~LsGHr---------~~vlaV~W--sp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkv 249 (397)
T KOG4283|consen 181 SHTLSGHR---------DGVLAVEW--SPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKV 249 (397)
T ss_pred eeeecccc---------CceEEEEe--ccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccccccccccee
Confidence 99999876 55999999 55544 57789999999999998742223333 3466789
Q ss_pred EEEEEcCCCceEEEEeCCCCEEEEECCCCe
Q 019405 262 KAVAEEPDSFNIYIGNGSGDLASVDIRTGK 291 (341)
Q Consensus 262 ~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~ 291 (341)
..++|+.++.++++.+.|..+++|+..+|+
T Consensus 250 ngla~tSd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 250 NGLAWTSDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred eeeeecccchhhhhccCccceEEeecccCc
Confidence 999999999999999999999999987653
No 130
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=2.1e-23 Score=169.88 Aligned_cols=269 Identities=13% Similarity=0.087 Sum_probs=203.2
Q ss_pred eeeeecCCCCeEEEEEecCccCccceeeeccC--CCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeec
Q 019405 16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGD--PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN 93 (341)
Q Consensus 16 ~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 93 (341)
++++| ..|-||||++... |....+..+.- .+.-+......+|+. -|++|+.-.++.|||+..-...-..+.
T Consensus 433 hVyTg-GkgcVKVWdis~p--g~k~PvsqLdcl~rdnyiRSckL~pdgr----tLivGGeastlsiWDLAapTprikael 505 (705)
T KOG0639|consen 433 HVYTG-GKGCVKVWDISQP--GNKSPVSQLDCLNRDNYIRSCKLLPDGR----TLIVGGEASTLSIWDLAAPTPRIKAEL 505 (705)
T ss_pred eeEec-CCCeEEEeeccCC--CCCCccccccccCcccceeeeEecCCCc----eEEeccccceeeeeeccCCCcchhhhc
Confidence 34444 5688999999886 33334444433 334444444555544 799999999999999975433221111
Q ss_pred cCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCC
Q 019405 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS 173 (341)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~ 173 (341)
.. ..-....++..+..+ ..+++..||.|.|||+.... .|+.+.- |...+.||.+++|
T Consensus 506 ts------sapaCyALa~spDak--------vcFsccsdGnI~vwDLhnq~--------~VrqfqG-htDGascIdis~d 562 (705)
T KOG0639|consen 506 TS------SAPACYALAISPDAK--------VCFSCCSDGNIAVWDLHNQT--------LVRQFQG-HTDGASCIDISKD 562 (705)
T ss_pred CC------cchhhhhhhcCCccc--------eeeeeccCCcEEEEEcccce--------eeecccC-CCCCceeEEecCC
Confidence 00 001112233333333 88999999999999997544 5666653 5677899999999
Q ss_pred CCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEE
Q 019405 174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS 253 (341)
Q Consensus 174 ~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 253 (341)
|..|-+|+.|++|+.||+++++++...... ..|.++.+ .|++.+|++|-.++.+.+......+ ...
T Consensus 563 GtklWTGGlDntvRcWDlregrqlqqhdF~----------SQIfSLg~--cP~~dWlavGMens~vevlh~skp~--kyq 628 (705)
T KOG0639|consen 563 GTKLWTGGLDNTVRCWDLREGRQLQQHDFS----------SQIFSLGY--CPTGDWLAVGMENSNVEVLHTSKPE--KYQ 628 (705)
T ss_pred CceeecCCCccceeehhhhhhhhhhhhhhh----------hhheeccc--CCCccceeeecccCcEEEEecCCcc--cee
Confidence 999999999999999999998776544332 44888888 7899999999999999888776543 456
Q ss_pred EEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEc
Q 019405 254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDI 330 (341)
Q Consensus 254 ~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~ 330 (341)
+..|++-|.++.|.+.|+++++.+.|+.+..|...-|..+...+. .+.|.++.++.|.++++||+.|....+|.+
T Consensus 629 lhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE--~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 629 LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE--SSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccc--cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 677999999999999999999999999999999988888877664 689999999999999999999988888765
No 131
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=1.3e-23 Score=168.86 Aligned_cols=218 Identities=17% Similarity=0.192 Sum_probs=161.4
Q ss_pred CCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeeccccccc---CCceEEEEEeecCCceEEEEecCC-CCEE
Q 019405 102 EDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAES---SCSTVKSWNVCASGTIAFSKVDIS-EKFS 177 (341)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~---~~~~v~~~~~~~~~~i~~~~~~~~-~~~l 177 (341)
|++.+..+.+.+.... .+++.+..+.+.||+....+..... ..-.+++. .|.+.-+.+.|++. .-.+
T Consensus 123 h~gEVnRaRymPQnp~-------iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~--gH~~eg~glsWn~~~~g~L 193 (422)
T KOG0264|consen 123 HDGEVNRARYMPQNPN-------IVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLK--GHEKEGYGLSWNRQQEGTL 193 (422)
T ss_pred CCccchhhhhCCCCCc-------EEEecCCCCCEEEEEeccCCCcccccccCCCceEEE--eecccccccccccccceeE
Confidence 4566666666665553 7777888999999998776532211 11112222 23445677899875 4578
Q ss_pred EEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCC-CCceeEEEEe
Q 019405 178 LFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA-QRRPVMSFDF 256 (341)
Q Consensus 178 ~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~ 256 (341)
++++.|++|.+||+......... ......-..|...|..++|+ .-+..+|++++.|+.+.|||.|+ ...+.+....
T Consensus 194 ls~~~d~~i~lwdi~~~~~~~~~--~~p~~~~~~h~~~VeDV~~h-~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~a 270 (422)
T KOG0264|consen 194 LSGSDDHTICLWDINAESKEDKV--VDPKTIFSGHEDVVEDVAWH-PLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKA 270 (422)
T ss_pred eeccCCCcEEEEeccccccCCcc--ccceEEeecCCcceehhhcc-ccchhhheeecCCCeEEEEEcCCCCCCCcccccc
Confidence 99999999999999753321000 00011112245779999996 34667899999999999999995 3445777888
Q ss_pred cCCCeEEEEEcCC-CceEEEEeCCCCEEEEECCCC-eEEeEEeccccCceeEEEecCCC-CEEEEEeCCCcEEEEEcCC
Q 019405 257 RETPIKAVAEEPD-SFNIYIGNGSGDLASVDIRTG-KLLGCFIGKCSGSIRSIARHPTL-PIIASCGLDSYLRFWDIKT 332 (341)
Q Consensus 257 ~~~~v~~~~~~~~-~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~dg~v~iwd~~~ 332 (341)
|..+|.|++|+|- +..||+|+.|++|.+||+|+. +++.++.+| ...|..+.|+|.. ..||+++.|+.+.+||+..
T Consensus 271 h~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H-~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ 348 (422)
T KOG0264|consen 271 HSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGH-EDEVFQVEWSPHNETVLASSGTDRRLNVWDLSR 348 (422)
T ss_pred cCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCC-CcceEEEEeCCCCCceeEecccCCcEEEEeccc
Confidence 9999999999994 577889999999999999975 568899998 9999999999966 4899999999999999964
No 132
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.92 E-value=8.3e-22 Score=160.67 Aligned_cols=231 Identities=16% Similarity=0.139 Sum_probs=166.0
Q ss_pred CCceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheee
Q 019405 13 PPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS 92 (341)
Q Consensus 13 ~~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 92 (341)
+.-.+++++++|.|.+|..... +..+....|++.|.++.+..++. |++|+.|.+|..|| .+-+.++..+
T Consensus 256 engdviTgDS~G~i~Iw~~~~~-----~~~k~~~aH~ggv~~L~~lr~Gt-----llSGgKDRki~~Wd-~~y~k~r~~e 324 (626)
T KOG2106|consen 256 ENGDVITGDSGGNILIWSKGTN-----RISKQVHAHDGGVFSLCMLRDGT-----LLSGGKDRKIILWD-DNYRKLRETE 324 (626)
T ss_pred CCCCEEeecCCceEEEEeCCCc-----eEEeEeeecCCceEEEEEecCcc-----EeecCccceEEecc-cccccccccc
Confidence 4456889999999999987443 44444448999999999999888 88899999999999 3333333332
Q ss_pred ccCCCC---------------------------------CCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEE
Q 019405 93 NAGDSG---------------------------------AQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRS 139 (341)
Q Consensus 93 ~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~ 139 (341)
...... ...|.+....++..+... .+++++.|+.+.+|+
T Consensus 325 lPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~--------q~~T~gqdk~v~lW~ 396 (626)
T KOG2106|consen 325 LPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKN--------QLLTCGQDKHVRLWN 396 (626)
T ss_pred CchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChh--------heeeccCcceEEEcc
Confidence 210000 011223333344333333 667777777777776
Q ss_pred eeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEE
Q 019405 140 IEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSA 219 (341)
Q Consensus 140 ~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 219 (341)
+ .-.+|......++.|+.|+|.| .++.|+..|...+.|.++...+..-.. . .+++++
T Consensus 397 -~-----------~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~---------~~ls~v 453 (626)
T KOG2106|consen 397 -D-----------HKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-N---------EQLSVV 453 (626)
T ss_pred -C-----------CceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-C---------CceEEE
Confidence 1 1234555556789999999999 999999999999999998554433222 2 559999
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEE-EecCCCeEEEEEcCCCceEEEEeCCCCEEEEEC
Q 019405 220 AFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF-DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDI 287 (341)
Q Consensus 220 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~ 287 (341)
+| +|+|.+||.|+.|+.|++|.+......+... +.+.++|+.+.|++|+++|.+-+.|-.|-.|..
T Consensus 454 ~y--sp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~ 520 (626)
T KOG2106|consen 454 RY--SPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKP 520 (626)
T ss_pred EE--cCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEcc
Confidence 99 9999999999999999999988755434333 234589999999999999999999999999943
No 133
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=4.2e-23 Score=157.46 Aligned_cols=218 Identities=18% Similarity=0.199 Sum_probs=166.7
Q ss_pred CCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeeccc--ccccCCceEEEEEe----ecCCceEEEEecC-
Q 019405 100 QPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV--SAESSCSTVKSWNV----CASGTIAFSKVDI- 172 (341)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~--~~~~~~~~v~~~~~----~~~~~i~~~~~~~- 172 (341)
.+|.+.+..+..-+.... ++++|+.||.+.+||++.... .++.--..+.+... .|.-.|..+.|-|
T Consensus 40 r~HgGsvNsL~id~tegr-------ymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~ 112 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGR-------YMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPI 112 (397)
T ss_pred ccCCCccceeeeccccce-------EEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeee
Confidence 356788888877665543 999999999999999987653 22111112222221 2334578888877
Q ss_pred CCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecC-CCCEEEEEeCCCeEEEEEcCCCCcee
Q 019405 173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQVRLYDTSAQRRPV 251 (341)
Q Consensus 173 ~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~ 251 (341)
|..++.+++-|.++++||..+.+....|..+. .|++-++.|-. ...++++|..+-.|++-|+..+.. -
T Consensus 113 DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~----------~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~-s 181 (397)
T KOG4283|consen 113 DTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEG----------KVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF-S 181 (397)
T ss_pred cCceeecccccceEEEeecccceeeEEeecCc----------eeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc-e
Confidence 66788899999999999999988887777543 36666662211 356889999999999999999886 8
Q ss_pred EEEEecCCCeEEEEEcCCCce-EEEEeCCCCEEEEECCCC-eEEeEEecc-------------ccCceeEEEecCCCCEE
Q 019405 252 MSFDFRETPIKAVAEEPDSFN-IYIGNGSGDLASVDIRTG-KLLGCFIGK-------------CSGSIRSIARHPTLPII 316 (341)
Q Consensus 252 ~~~~~~~~~v~~~~~~~~~~~-l~~g~~dg~i~iwd~~~~-~~~~~~~~~-------------~~~~i~~~~~~~~~~~l 316 (341)
+.+.+|.+.|.++.|+|...+ |++|+.||.|++||++.. .+...+..| |.+.|+.++|..++.++
T Consensus 182 H~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l 261 (397)
T KOG4283|consen 182 HTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYL 261 (397)
T ss_pred eeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhh
Confidence 999999999999999997754 678999999999999854 233333222 37889999999999999
Q ss_pred EEEeCCCcEEEEEcCCCce
Q 019405 317 ASCGLDSYLRFWDIKTRQL 335 (341)
Q Consensus 317 ~s~~~dg~v~iwd~~~~~~ 335 (341)
++++.|..+++|+..+|+-
T Consensus 262 ~~~gtd~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 262 ASCGTDDRIRVWNMESGRN 280 (397)
T ss_pred hhccCccceEEeecccCcc
Confidence 9999999999999998764
No 134
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.92 E-value=5.6e-23 Score=161.62 Aligned_cols=237 Identities=12% Similarity=0.196 Sum_probs=171.3
Q ss_pred CceeeeecCCCCeEEEEEecC-----------ccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeC
Q 019405 14 PLRALTFDSLGLIKVIEARGE-----------HGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNP 82 (341)
Q Consensus 14 ~~~~~~~~~~g~i~~~~~~~~-----------~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~ 82 (341)
..-+.+.++.|.|++|++... +....+++.++.+|...-+.+.||+.... .|++|..-+.|++|..
T Consensus 165 ~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g---~LlsGDc~~~I~lw~~ 241 (440)
T KOG0302|consen 165 EVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG---RLLSGDCVKGIHLWEP 241 (440)
T ss_pred cceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc---ccccCccccceEeeee
Confidence 445678899999999998752 11233556777778877778888773332 3888888888888887
Q ss_pred CCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecC
Q 019405 83 LNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCAS 162 (341)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~ 162 (341)
.+|..... . . + + +.|.
T Consensus 242 ~~g~W~vd--~-------------------------------------------------~---------P---f-~gH~ 257 (440)
T KOG0302|consen 242 STGSWKVD--Q-------------------------------------------------R---------P---F-TGHT 257 (440)
T ss_pred ccCceeec--C-------------------------------------------------c---------c---c-cccc
Confidence 66443110 0 0 0 0 1245
Q ss_pred CceEEEEecCC-CCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEE
Q 019405 163 GTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL 241 (341)
Q Consensus 163 ~~i~~~~~~~~-~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~i 241 (341)
..|-.++|+|. ...|++|+.||+|+|||++.+.....+.. ..|..-|+.+.| +....+|++|+.||+++|
T Consensus 258 ~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-------kAh~sDVNVISW--nr~~~lLasG~DdGt~~i 328 (440)
T KOG0302|consen 258 KSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-------KAHNSDVNVISW--NRREPLLASGGDDGTLSI 328 (440)
T ss_pred cchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-------eccCCceeeEEc--cCCcceeeecCCCceEEE
Confidence 67778889885 46889999999999999998733221111 113456999999 777779999999999999
Q ss_pred EEcCCC--CceeEEEEecCCCeEEEEEcCC-CceEEEEeCCCCEEEEECCCC-------------------eEEeEEecc
Q 019405 242 YDTSAQ--RRPVMSFDFRETPIKAVAEEPD-SFNIYIGNGSGDLASVDIRTG-------------------KLLGCFIGK 299 (341)
Q Consensus 242 wd~~~~--~~~~~~~~~~~~~v~~~~~~~~-~~~l~~g~~dg~i~iwd~~~~-------------------~~~~~~~~~ 299 (341)
||++.. .+|+..++.|..+|+++.|+|. ...|++++.|..|.|||+..- +++..-++
T Consensus 329 wDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqG- 407 (440)
T KOG0302|consen 329 WDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQG- 407 (440)
T ss_pred EEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecc-
Confidence 999964 3579999999999999999995 468889999999999998521 12332233
Q ss_pred ccCceeEEEecCCCC-EEEEEeCCCcEEEEE
Q 019405 300 CSGSIRSIARHPTLP-IIASCGLDSYLRFWD 329 (341)
Q Consensus 300 ~~~~i~~~~~~~~~~-~l~s~~~dg~v~iwd 329 (341)
...+..+.|+++-+ +|++.+.|| +.||.
T Consensus 408 -Qke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 408 -QKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred -hhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 46788999999776 788888888 45553
No 135
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=5.3e-22 Score=167.03 Aligned_cols=246 Identities=18% Similarity=0.193 Sum_probs=197.1
Q ss_pred CCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcch-heeeccCCCCCCCCCCceeeEeeeecccccccccccee
Q 019405 48 PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR-VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL 126 (341)
Q Consensus 48 ~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 126 (341)
....+.++|++.... .||.+-.||.|.||++..+-.. ..+.+ +.+..+-+++|. ... +|
T Consensus 24 ~Ps~I~slA~s~kS~----~lAvsRt~g~IEiwN~~~~w~~~~vi~g-------~~drsIE~L~W~-e~~--------RL 83 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSN----QLAVSRTDGNIEIWNLSNNWFLEPVIHG-------PEDRSIESLAWA-EGG--------RL 83 (691)
T ss_pred eccceEEEEEeccCC----ceeeeccCCcEEEEccCCCceeeEEEec-------CCCCceeeEEEc-cCC--------eE
Confidence 567899999998887 5999999999999999875433 33333 344667778776 333 89
Q ss_pred EEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCC
Q 019405 127 LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKN 206 (341)
Q Consensus 127 ~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~ 206 (341)
++.+.+|.+.-||+...+ +.+..+. .++.|++++.+|.+..++.|+.||.++.++...++......-..
T Consensus 84 FS~g~sg~i~EwDl~~lk--------~~~~~d~-~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~r-- 152 (691)
T KOG2048|consen 84 FSSGLSGSITEWDLHTLK--------QKYNIDS-NGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMR-- 152 (691)
T ss_pred EeecCCceEEEEecccCc--------eeEEecC-CCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeeccc--
Confidence 999999999999987544 4455553 57899999999999999999999988888887776654433322
Q ss_pred ccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEe--------cCCCeEEEEEcCCCceEEEEeC
Q 019405 207 SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF--------RETPIKAVAEEPDSFNIYIGNG 278 (341)
Q Consensus 207 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~g~~ 278 (341)
..+++.++.| ++++..++.|+.||.|++||...+.. +...+- ...-|+++.|-.++ .|++|..
T Consensus 153 -----q~sRvLslsw--~~~~~~i~~Gs~Dg~Iriwd~~~~~t-~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS 223 (691)
T KOG2048|consen 153 -----QKSRVLSLSW--NPTGTKIAGGSIDGVIRIWDVKSGQT-LHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDS 223 (691)
T ss_pred -----ccceEEEEEe--cCCccEEEecccCceEEEEEcCCCce-EEEeeecccccccCCceEEEEEEEeecC-cEEEecC
Confidence 1377999999 89999999999999999999998764 331111 12246777776554 7999999
Q ss_pred CCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCc
Q 019405 279 SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ 334 (341)
Q Consensus 279 dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 334 (341)
.|+|.+||...+.++..+..| .+.|.+++..+++..+++++.|+.|..|...+++
T Consensus 224 ~G~V~FWd~~~gTLiqS~~~h-~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~ 278 (691)
T KOG2048|consen 224 AGTVTFWDSIFGTLIQSHSCH-DADVLALAVADNEDRVFSAGVDPKIIQYSLTTNK 278 (691)
T ss_pred CceEEEEcccCcchhhhhhhh-hcceeEEEEcCCCCeEEEccCCCceEEEEecCCc
Confidence 999999999999999999998 8999999999999999999999999988877654
No 136
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1e-23 Score=187.17 Aligned_cols=285 Identities=13% Similarity=0.184 Sum_probs=212.3
Q ss_pred cCCCCeEEEEEecCc-cCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCC---CcchheeeccCC
Q 019405 21 DSLGLIKVIEARGEH-GGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN---GDLRVAISNAGD 96 (341)
Q Consensus 21 ~~~g~i~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~---~~~~~~~~~~~~ 96 (341)
+.+..+.+|.++... .+..+.+..+ .....-+.++|+..++....+||.|..||.|.+||... +.....+..
T Consensus 36 st~~slEifeld~~~~~~dlk~~~s~-~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~--- 111 (1049)
T KOG0307|consen 36 STSASLEIFELDFSDESSDLKPVGSL-QSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLAT--- 111 (1049)
T ss_pred ccccccceeeecccCccccccccccc-cccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhh---
Confidence 445666777766541 1212232222 12334456777776664334688899999999999865 222211111
Q ss_pred CCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCC-CC
Q 019405 97 SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS-EK 175 (341)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~-~~ 175 (341)
.+.|.+.|..+.+.....+ .+++|+.+|.|.|||++.-.... ..+ .......|.+++|+.. ..
T Consensus 112 --~~~h~G~V~gLDfN~~q~n-------lLASGa~~geI~iWDlnn~~tP~--~~~-----~~~~~~eI~~lsWNrkvqh 175 (1049)
T KOG0307|consen 112 --KSKHTGPVLGLDFNPFQGN-------LLASGADDGEILIWDLNKPETPF--TPG-----SQAPPSEIKCLSWNRKVSH 175 (1049)
T ss_pred --hcccCCceeeeeccccCCc-------eeeccCCCCcEEEeccCCcCCCC--CCC-----CCCCcccceEeccchhhhH
Confidence 1246789999888776654 89999999999999998743221 111 2234568999999874 46
Q ss_pred EEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCC---eEEEEEcCCCCceeE
Q 019405 176 FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH---QVRLYDTSAQRRPVM 252 (341)
Q Consensus 176 ~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~ 252 (341)
.|++++.+|.+.|||++..+++..+..+... ..+..+.|+|+ +...+++++.|. .|.+||+|....+++
T Consensus 176 ILAS~s~sg~~~iWDlr~~~pii~ls~~~~~-------~~~S~l~WhP~-~aTql~~As~dd~~PviqlWDlR~assP~k 247 (1049)
T KOG0307|consen 176 ILASGSPSGRAVIWDLRKKKPIIKLSDTPGR-------MHCSVLAWHPD-HATQLLVASGDDSAPVIQLWDLRFASSPLK 247 (1049)
T ss_pred HhhccCCCCCceeccccCCCcccccccCCCc-------cceeeeeeCCC-CceeeeeecCCCCCceeEeecccccCCchh
Confidence 7888999999999999998888777766532 33788999532 334566666553 699999998888899
Q ss_pred EEEecCCCeEEEEEcCCC-ceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCC-EEEEEeCCCcEEEEEc
Q 019405 253 SFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP-IIASCGLDSYLRFWDI 330 (341)
Q Consensus 253 ~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~dg~v~iwd~ 330 (341)
.+++|+..|.++.|++.+ ++|++++.|+.|.+|+.++++.+..+... .+++..+.|+|... .++.++.||.|-|+.+
T Consensus 248 ~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~-~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl 326 (1049)
T KOG0307|consen 248 ILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQ-GNWCFDVQWCPRNPSVMAAASFDGKISIYSL 326 (1049)
T ss_pred hhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCC-CcceeeeeecCCCcchhhhheeccceeeeee
Confidence 999999999999999966 89999999999999999999999999986 89999999999887 8899999999999998
Q ss_pred CCCc
Q 019405 331 KTRQ 334 (341)
Q Consensus 331 ~~~~ 334 (341)
..+.
T Consensus 327 ~~~~ 330 (1049)
T KOG0307|consen 327 QGTD 330 (1049)
T ss_pred ecCC
Confidence 7653
No 137
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.5e-22 Score=163.11 Aligned_cols=273 Identities=12% Similarity=0.145 Sum_probs=203.7
Q ss_pred eeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCC
Q 019405 17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGD 96 (341)
Q Consensus 17 ~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 96 (341)
+++++-||.++++.+..... ..++.+.-..-++....|.+.++. .+++++....++.||+++.+..+.-...
T Consensus 228 llvaG~d~~lrifqvDGk~N---~~lqS~~l~~fPi~~a~f~p~G~~---~i~~s~rrky~ysyDle~ak~~k~~~~~-- 299 (514)
T KOG2055|consen 228 LLVAGLDGTLRIFQVDGKVN---PKLQSIHLEKFPIQKAEFAPNGHS---VIFTSGRRKYLYSYDLETAKVTKLKPPY-- 299 (514)
T ss_pred EEEecCCCcEEEEEecCccC---hhheeeeeccCccceeeecCCCce---EEEecccceEEEEeeccccccccccCCC--
Confidence 67888999999999987622 233344335677888888887663 5999999999999999887664432221
Q ss_pred CCCCCCCCceeeEeee---eccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCC
Q 019405 97 SGAQPEDDGIVGLHLF---KRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS 173 (341)
Q Consensus 97 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~ 173 (341)
+.+. ..+..| +... .++..+..|.|.+....... .+..+. -.+.|..+.|+.+
T Consensus 300 ----g~e~--~~~e~FeVShd~~--------fia~~G~~G~I~lLhakT~e--------li~s~K--ieG~v~~~~fsSd 355 (514)
T KOG2055|consen 300 ----GVEE--KSMERFEVSHDSN--------FIAIAGNNGHIHLLHAKTKE--------LITSFK--IEGVVSDFTFSSD 355 (514)
T ss_pred ----Cccc--chhheeEecCCCC--------eEEEcccCceEEeehhhhhh--------hhheee--eccEEeeEEEecC
Confidence 0111 123333 3333 88888888988887654443 222233 3578999999999
Q ss_pred CCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCC-----CC
Q 019405 174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA-----QR 248 (341)
Q Consensus 174 ~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~-----~~ 248 (341)
++.|++++.+|.|.+||+++...++.+.... .|....+++++++.+||+|+..|.|.|||..+ ..
T Consensus 356 sk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G----------~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~P 425 (514)
T KOG2055|consen 356 SKELLASGGTGEVYVWNLRQNSCLHRFVDDG----------SVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNP 425 (514)
T ss_pred CcEEEEEcCCceEEEEecCCcceEEEEeecC----------ccceeeeeecCCCceEEeccCcceEEEeccchhhccCCC
Confidence 9999999999999999999998888777543 34444554488999999999999999999654 22
Q ss_pred ceeEEEEecCCCeEEEEEcCCCceEEEEeC--CCCEEEEECCCCeEEeEEecc--ccCceeEEEecCCCCEEEEEeCCCc
Q 019405 249 RPVMSFDFRETPIKAVAEEPDSFNIYIGNG--SGDLASVDIRTGKLLGCFIGK--CSGSIRSIARHPTLPIIASCGLDSY 324 (341)
Q Consensus 249 ~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~--dg~i~iwd~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~s~~~dg~ 324 (341)
+|+..+..-...|++++|+|++++||.++. ...+++-.+.+......|+.. .-+.|++|+|+|.+.+||.|..+|.
T Consensus 426 kPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~gr 505 (514)
T KOG2055|consen 426 KPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGR 505 (514)
T ss_pred CchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCc
Confidence 456666655678999999999999988875 577999988877666656543 1346999999999999999999999
Q ss_pred EEEEEcC
Q 019405 325 LRFWDIK 331 (341)
Q Consensus 325 v~iwd~~ 331 (341)
|.+|.+.
T Consensus 506 v~l~kL~ 512 (514)
T KOG2055|consen 506 VHLFKLH 512 (514)
T ss_pred eeeEeec
Confidence 9999875
No 138
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.5e-21 Score=164.28 Aligned_cols=278 Identities=14% Similarity=0.094 Sum_probs=208.3
Q ss_pred ceeeeecCCCCeEEEEEecCccCccceeee-ccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeec
Q 019405 15 LRALTFDSLGLIKVIEARGEHGGVPKVVER-WGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN 93 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 93 (341)
-.+..+-.+|.|.+|++... |-.... .++.++.+..++|+..+ .|.+.+.+|.|.-||+.+++....+..
T Consensus 38 ~~lAvsRt~g~IEiwN~~~~----w~~~~vi~g~~drsIE~L~W~e~~-----RLFS~g~sg~i~EwDl~~lk~~~~~d~ 108 (691)
T KOG2048|consen 38 NQLAVSRTDGNIEIWNLSNN----WFLEPVIHGPEDRSIESLAWAEGG-----RLFSSGLSGSITEWDLHTLKQKYNIDS 108 (691)
T ss_pred CceeeeccCCcEEEEccCCC----ceeeEEEecCCCCceeeEEEccCC-----eEEeecCCceEEEEecccCceeEEecC
Confidence 33556678899999999886 222222 34578889999999444 499999999999999999988877765
Q ss_pred cCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCC
Q 019405 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS 173 (341)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~ 173 (341)
..+.+-+++..+... .++.+++||.+..+++...... .-+.+. ...+.+.+++|+|+
T Consensus 109 --------~gg~IWsiai~p~~~--------~l~IgcddGvl~~~s~~p~~I~------~~r~l~-rq~sRvLslsw~~~ 165 (691)
T KOG2048|consen 109 --------NGGAIWSIAINPENT--------ILAIGCDDGVLYDFSIGPDKIT------YKRSLM-RQKSRVLSLSWNPT 165 (691)
T ss_pred --------CCcceeEEEeCCccc--------eEEeecCCceEEEEecCCceEE------EEeecc-cccceEEEEEecCC
Confidence 347777888877776 8899999996666654322210 011111 23578999999999
Q ss_pred CCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEE
Q 019405 174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS 253 (341)
Q Consensus 174 ~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 253 (341)
+..++.|+.||.|++||..++..+..... ....+....+.-|.++.|. ....|++|..-|+|.+||...+.. ++.
T Consensus 166 ~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~-~~d~l~k~~~~iVWSv~~L---rd~tI~sgDS~G~V~FWd~~~gTL-iqS 240 (691)
T KOG2048|consen 166 GTKIAGGSIDGVIRIWDVKSGQTLHIITM-QLDRLSKREPTIVWSVLFL---RDSTIASGDSAGTVTFWDSIFGTL-IQS 240 (691)
T ss_pred ccEEEecccCceEEEEEcCCCceEEEeee-cccccccCCceEEEEEEEe---ecCcEEEecCCceEEEEcccCcch-hhh
Confidence 99999999999999999998877662211 1111111123558888885 345899999999999999998775 888
Q ss_pred EEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeE---EeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEc
Q 019405 254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL---LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDI 330 (341)
Q Consensus 254 ~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~ 330 (341)
+..|...|.+++..+++..+++++.|+.|..|...+++. ....+.+|...|.+++..++ .+++|+.|..+.+-..
T Consensus 241 ~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s 318 (691)
T KOG2048|consen 241 HSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSS 318 (691)
T ss_pred hhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccc
Confidence 888999999999999999999999999999998776643 22233334788999999877 8999999998887654
Q ss_pred C
Q 019405 331 K 331 (341)
Q Consensus 331 ~ 331 (341)
.
T Consensus 319 ~ 319 (691)
T KOG2048|consen 319 R 319 (691)
T ss_pred c
Confidence 4
No 139
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.3e-21 Score=168.48 Aligned_cols=267 Identities=12% Similarity=0.061 Sum_probs=194.4
Q ss_pred CceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeec
Q 019405 14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN 93 (341)
Q Consensus 14 ~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 93 (341)
.-.+++++.||.|++|+-.... ..++. ...+...+.+++ .... +|++|+.+++|.+|...+++.-..+..
T Consensus 25 gefi~tcgsdg~ir~~~~~sd~-e~P~t---i~~~g~~v~~ia--~~s~----~f~~~s~~~tv~~y~fps~~~~~iL~R 94 (933)
T KOG1274|consen 25 GEFICTCGSDGDIRKWKTNSDE-EEPET---IDISGELVSSIA--CYSN----HFLTGSEQNTVLRYKFPSGEEDTILAR 94 (933)
T ss_pred CCEEEEecCCCceEEeecCCcc-cCCch---hhccCceeEEEe--eccc----ceEEeeccceEEEeeCCCCCccceeee
Confidence 3468899999999999877652 22222 211444454444 2233 699999999999999988876555544
Q ss_pred cCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCC
Q 019405 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS 173 (341)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~ 173 (341)
.+ -++.++++.-... .++.|+.|-.+++.++.... ..+... .|.++|.++.++|.
T Consensus 95 ft--------lp~r~~~v~g~g~--------~iaagsdD~~vK~~~~~D~s--------~~~~lr-gh~apVl~l~~~p~ 149 (933)
T KOG1274|consen 95 FT--------LPIRDLAVSGSGK--------MIAAGSDDTAVKLLNLDDSS--------QEKVLR-GHDAPVLQLSYDPK 149 (933)
T ss_pred ee--------ccceEEEEecCCc--------EEEeecCceeEEEEeccccc--------hheeec-ccCCceeeeeEcCC
Confidence 21 3455566554444 89999999999999875433 334443 57889999999999
Q ss_pred CCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEE
Q 019405 174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS 253 (341)
Q Consensus 174 ~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 253 (341)
+++||+.+-||.|++||+.++.....+....+.. .......+..++| +|++..++..+.|+.|++|+....+. ...
T Consensus 150 ~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n-~~~~s~i~~~~aW--~Pk~g~la~~~~d~~Vkvy~r~~we~-~f~ 225 (933)
T KOG1274|consen 150 GNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDN-EFILSRICTRLAW--HPKGGTLAVPPVDNTVKVYSRKGWEL-QFK 225 (933)
T ss_pred CCEEEEEecCceEEEEEcccchhhhhcccCCccc-cccccceeeeeee--cCCCCeEEeeccCCeEEEEccCCcee-hee
Confidence 9999999999999999999988777766543321 1111345778899 88988888889999999999988664 444
Q ss_pred EEe--cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCc
Q 019405 254 FDF--RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSY 324 (341)
Q Consensus 254 ~~~--~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~ 324 (341)
+.. +...+..++|+|+|+|||+++.+|.|.|||.++-.. +.+ ...|.+++|.|+.+.+-.-...|.
T Consensus 226 Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-~~~----~~~Vc~~aw~p~~n~it~~~~~g~ 293 (933)
T KOG1274|consen 226 LRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-HEF----KRAVCCEAWKPNANAITLITALGT 293 (933)
T ss_pred ecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh-ccc----cceeEEEecCCCCCeeEEEeeccc
Confidence 443 444589999999999999999999999999987222 212 568999999999886544433343
No 140
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=2.9e-24 Score=181.82 Aligned_cols=237 Identities=16% Similarity=0.179 Sum_probs=195.9
Q ss_pred ccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccc
Q 019405 45 WGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSR 124 (341)
Q Consensus 45 ~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (341)
+..|...+.++..-. .+..+++|+.|..+-+|....-..+..+.+ |+.+|-++.+-....
T Consensus 24 ~~~hsaav~~lk~~~----s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~--------hespIeSl~f~~~E~-------- 83 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRK----SSRSLVTGGEDEKVNLWAIGKPNAITSLTG--------HESPIESLTFDTSER-------- 83 (825)
T ss_pred hhhhhhhhceeeeec----cceeeccCCCceeeccccccCCchhheeec--------cCCcceeeecCcchh--------
Confidence 334666676666422 233799999999999999866555555554 567888888776666
Q ss_pred eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCC
Q 019405 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP 204 (341)
Q Consensus 125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~ 204 (341)
.+++|+.+|++++||++..+ .++.. ..|...+..+.|+|-+.+.+.|+.|..+++||++..-+...+..+.
T Consensus 84 LlaagsasgtiK~wDleeAk--------~vrtL-tgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~ 154 (825)
T KOG0267|consen 84 LLAAGSASGTIKVWDLEEAK--------IVRTL-TGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHT 154 (825)
T ss_pred hhcccccCCceeeeehhhhh--------hhhhh-hccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCc
Confidence 89999999999999998554 22221 1345678899999999999999999999999999777777777643
Q ss_pred CCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEE
Q 019405 205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLAS 284 (341)
Q Consensus 205 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~i 284 (341)
..+..+.| +|+|.+++.++.|.+++|||...++. ...|..|+..+.++.|+|..-+++.|+.|+++++
T Consensus 155 ---------~vv~~l~l--sP~Gr~v~~g~ed~tvki~d~~agk~-~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f 222 (825)
T KOG0267|consen 155 ---------RVVDVLRL--SPDGRWVASGGEDNTVKIWDLTAGKL-SKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRF 222 (825)
T ss_pred ---------ceeEEEee--cCCCceeeccCCcceeeeeccccccc-ccccccccccccccccCchhhhhccCCCCceeee
Confidence 55888999 99999999999999999999998775 8889999999999999999999999999999999
Q ss_pred EECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCC
Q 019405 285 VDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDS 323 (341)
Q Consensus 285 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg 323 (341)
||+++.+.+...... ...|.++.|+|++..+++|..+.
T Consensus 223 ~dletfe~I~s~~~~-~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 223 WDLETFEVISSGKPE-TDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred eccceeEEeeccCCc-cCCceeeeecCCceeeecCchhh
Confidence 999999999888876 78999999999999998887654
No 141
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.91 E-value=2.3e-22 Score=151.09 Aligned_cols=266 Identities=15% Similarity=0.127 Sum_probs=193.4
Q ss_pred eeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccc
Q 019405 41 VVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS 120 (341)
Q Consensus 41 ~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (341)
+...++.|...++++.|-..+. |.+|..-|.|++|++.+...+..++.+ +...++.+...+. +
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-----L~sg~~~G~V~~w~lqt~r~~~~~r~~-------g~~~it~lq~~p~-d---- 68 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-----LMSGLSVGIVKMWVLQTERDLPLIRLF-------GRLFITNLQSIPN-D---- 68 (323)
T ss_pred CeeEeccccchheehhhccchh-----hhcccccceEEEEEeecCccchhhhhh-------ccceeeceeecCC-c----
Confidence 4446668888888887766555 999999999999999998888888753 4466777766654 3
Q ss_pred cccceeEEEcccceeEEEEeeeccccc--------------------------------ccCC---------ceEEEEEe
Q 019405 121 SRSRTLLTCTTKGKASMRSIEVTKVSA--------------------------------ESSC---------STVKSWNV 159 (341)
Q Consensus 121 ~~~~~l~~~~~~g~~~i~~~~~~~~~~--------------------------------~~~~---------~~v~~~~~ 159 (341)
.+.+-+.|..+.+|++.++.-.+ +++. -.+++-+-
T Consensus 69 ----~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd 144 (323)
T KOG0322|consen 69 ----SLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADD 144 (323)
T ss_pred ----chhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCc
Confidence 67888888999999887632110 0000 00000000
Q ss_pred ---ecCCceEEEEecC-CC--CEEEEeeCCCeEEEEECCCCceeeecCCCCCCcc-CccCCeeeeEEEEEecCCCCEEEE
Q 019405 160 ---CASGTIAFSKVDI-SE--KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSL-GIFTPTWFTSAAFLSIDDHRKFVA 232 (341)
Q Consensus 160 ---~~~~~i~~~~~~~-~~--~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~ 232 (341)
...+.+.|..+.. .+ -++++|..+|.+.+||+.++..+..++...+... ...|..+|.++.| .+.-+.=++
T Consensus 145 ~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldy--as~~~rGis 222 (323)
T KOG0322|consen 145 SERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDY--ASSCDRGIS 222 (323)
T ss_pred hhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeee--chhhcCCcC
Confidence 0013466666432 22 3566788999999999999877666654433221 2335678999999 554455577
Q ss_pred EeCCCeEEEEEcCCC--CceeE-EEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEe
Q 019405 233 GTNDHQVRLYDTSAQ--RRPVM-SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIAR 309 (341)
Q Consensus 233 ~~~d~~i~iwd~~~~--~~~~~-~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~ 309 (341)
|+.+..+..|.+... ..++. .....+-.|..+..-||++.+|+++.|+.|++|+.++.+++..++.| .+.|++++|
T Consensus 223 gga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyH-sagvn~vAf 301 (323)
T KOG0322|consen 223 GGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYH-SAGVNAVAF 301 (323)
T ss_pred CCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhh-hcceeEEEe
Confidence 888888999988753 22222 22334456888999999999999999999999999999999999998 899999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEc
Q 019405 310 HPTLPIIASCGLDSYLRFWDI 330 (341)
Q Consensus 310 ~~~~~~l~s~~~dg~v~iwd~ 330 (341)
+|+.+++|.+|.|++|.+|++
T Consensus 302 spd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 302 SPDCELMAAASKDARISLWKL 322 (323)
T ss_pred CCCCchhhhccCCceEEeeec
Confidence 999999999999999999986
No 142
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.91 E-value=1.1e-21 Score=158.11 Aligned_cols=284 Identities=14% Similarity=0.104 Sum_probs=200.4
Q ss_pred ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 94 (341)
-.+++|+..|+|-+|++...... ..-+..+..|..+|..+.|++.... .+++.+.||+|++-|++.+.....+...
T Consensus 201 ~lva~GdK~G~VG~Wn~~~~~~d-~d~v~~f~~hs~~Vs~l~F~P~n~s---~i~ssSyDGtiR~~D~~~~i~e~v~s~~ 276 (498)
T KOG4328|consen 201 KLVAVGDKGGQVGLWNFGTQEKD-KDGVYLFTPHSGPVSGLKFSPANTS---QIYSSSYDGTIRLQDFEGNISEEVLSLD 276 (498)
T ss_pred eEEEEccCCCcEEEEecCCCCCc-cCceEEeccCCccccceEecCCChh---heeeeccCceeeeeeecchhhHHHhhcC
Confidence 45778999999999999422101 1223467789999999999998764 5999999999999999876554444331
Q ss_pred CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCC-
Q 019405 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS- 173 (341)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~- 173 (341)
. ....+..+.+..... .++.+..=|...+||.+.... ....|.+ |...|..++++|-
T Consensus 277 ~------d~~~fs~~d~~~e~~--------~vl~~~~~G~f~~iD~R~~~s-------~~~~~~l-h~kKI~sv~~NP~~ 334 (498)
T KOG4328|consen 277 T------DNIWFSSLDFSAESR--------SVLFGDNVGNFNVIDLRTDGS-------EYENLRL-HKKKITSVALNPVC 334 (498)
T ss_pred c------cceeeeeccccCCCc--------cEEEeecccceEEEEeecCCc-------cchhhhh-hhcccceeecCCCC
Confidence 0 112233333333333 677777777889999875432 2334444 4558999999995
Q ss_pred CCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcC---CCCce
Q 019405 174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS---AQRRP 250 (341)
Q Consensus 174 ~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~---~~~~~ 250 (341)
..++++++.|++.+|||+++...... .-.....|...|.+..| +|.+..|++.+.|..|+|||.. ..-.+
T Consensus 335 p~~laT~s~D~T~kIWD~R~l~~K~s-----p~lst~~HrrsV~sAyF--SPs~gtl~TT~~D~~IRv~dss~~sa~~~p 407 (498)
T KOG4328|consen 335 PWFLATASLDQTAKIWDLRQLRGKAS-----PFLSTLPHRRSVNSAYF--SPSGGTLLTTCQDNEIRVFDSSCISAKDEP 407 (498)
T ss_pred chheeecccCcceeeeehhhhcCCCC-----cceecccccceeeeeEE--cCCCCceEeeccCCceEEeecccccccCCc
Confidence 56799999999999999986443332 01112335577999999 8888889999999999999984 22223
Q ss_pred eEEEEecCC----C--eEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEE-EecCCCC-EEEEEeCC
Q 019405 251 VMSFDFRET----P--IKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSI-ARHPTLP-IIASCGLD 322 (341)
Q Consensus 251 ~~~~~~~~~----~--v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~-~~~~~~~-~l~s~~~d 322 (341)
...+. |.. . .....|.|+..++++|..-..|-|+|-..++.+..+.......|.++ .|+|-+. +++.++..
T Consensus 408 ~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~ 486 (498)
T KOG4328|consen 408 LGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSS 486 (498)
T ss_pred cceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCcc
Confidence 43333 321 2 23468999999999999999999999999998888876634466664 7999888 55555677
Q ss_pred CcEEEEEcCC
Q 019405 323 SYLRFWDIKT 332 (341)
Q Consensus 323 g~v~iwd~~~ 332 (341)
|.|+||--+.
T Consensus 487 Gki~vft~k~ 496 (498)
T KOG4328|consen 487 GKIYVFTNKK 496 (498)
T ss_pred ceEEEEecCC
Confidence 8999997553
No 143
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=9.6e-22 Score=151.43 Aligned_cols=273 Identities=15% Similarity=0.155 Sum_probs=200.8
Q ss_pred eeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCC
Q 019405 17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGD 96 (341)
Q Consensus 17 ~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 96 (341)
+..|..+|.+-+|+...- .+...+++|-.+++++++|++++ .|+|++.|..|.+||+..|.+++.+...
T Consensus 38 lAvGc~nG~vvI~D~~T~-----~iar~lsaH~~pi~sl~WS~dgr----~LltsS~D~si~lwDl~~gs~l~rirf~-- 106 (405)
T KOG1273|consen 38 LAVGCANGRVVIYDFDTF-----RIARMLSAHVRPITSLCWSRDGR----KLLTSSRDWSIKLWDLLKGSPLKRIRFD-- 106 (405)
T ss_pred eeeeccCCcEEEEEcccc-----chhhhhhccccceeEEEecCCCC----EeeeecCCceeEEEeccCCCceeEEEcc--
Confidence 456778999999998886 34456889999999999999888 8999999999999999999999888863
Q ss_pred CCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeeccc--ccccCCceEEEEEeecCCceEEEEecCCC
Q 019405 97 SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV--SAESSCSTVKSWNVCASGTIAFSKVDISE 174 (341)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~--~~~~~~~~v~~~~~~~~~~i~~~~~~~~~ 174 (341)
.++....|.+...+ .+++.-.+..-.+-++..... ..-..++... ..-.+..|++.|
T Consensus 107 -------spv~~~q~hp~k~n-------~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln-------~sas~~~fdr~g 165 (405)
T KOG1273|consen 107 -------SPVWGAQWHPRKRN-------KCVATIMEESPVVIDFSDPKHSVLPKDDDGDLN-------SSASHGVFDRRG 165 (405)
T ss_pred -------CccceeeeccccCC-------eEEEEEecCCcEEEEecCCceeeccCCCccccc-------cccccccccCCC
Confidence 56777777776653 444444443333433322110 0000111110 112233688899
Q ss_pred CEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCC------
Q 019405 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR------ 248 (341)
Q Consensus 175 ~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~------ 248 (341)
+++++|...|.+.+||.++.+.+..++... ...|..+.+ +..+.+|+.-+.|+.||.|+++.--
T Consensus 166 ~yIitGtsKGkllv~~a~t~e~vas~rits--------~~~IK~I~~--s~~g~~liiNtsDRvIR~ye~~di~~~~r~~ 235 (405)
T KOG1273|consen 166 KYIITGTSKGKLLVYDAETLECVASFRITS--------VQAIKQIIV--SRKGRFLIINTSDRVIRTYEISDIDDEGRDG 235 (405)
T ss_pred CEEEEecCcceEEEEecchheeeeeeeech--------heeeeEEEE--eccCcEEEEecCCceEEEEehhhhcccCccC
Confidence 999999999999999999988877666433 134888888 8899999999999999999987311
Q ss_pred c--eeEEEEe--cCCCeEEEEEcCCCceEEEEeCC-CCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCC
Q 019405 249 R--PVMSFDF--RETPIKAVAEEPDSFNIYIGNGS-GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDS 323 (341)
Q Consensus 249 ~--~~~~~~~--~~~~v~~~~~~~~~~~l~~g~~d-g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg 323 (341)
. +.++++. ....-.+++|+.+|.++++|+.. ..++||....|.+++.+.|........+.|+|-...+++- ..|
T Consensus 236 e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg 314 (405)
T KOG1273|consen 236 EVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASG 314 (405)
T ss_pred CcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCC
Confidence 0 1111110 12345678999999999888743 5599999999999999998744678889999999999888 788
Q ss_pred cEEEEEcCC
Q 019405 324 YLRFWDIKT 332 (341)
Q Consensus 324 ~v~iwd~~~ 332 (341)
.|++|....
T Consensus 315 ~v~iw~~~~ 323 (405)
T KOG1273|consen 315 VVYIWAVVQ 323 (405)
T ss_pred ceEEEEeec
Confidence 999998764
No 144
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.90 E-value=5.9e-22 Score=155.93 Aligned_cols=198 Identities=15% Similarity=0.202 Sum_probs=152.4
Q ss_pred eeEEEcccceeEEEEeeecccc--------cccCCceEEEEEeecCCceEEEEecCC-CCEEEEeeCCCeEEEEECCCCc
Q 019405 125 TLLTCTTKGKASMRSIEVTKVS--------AESSCSTVKSWNVCASGTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDKCE 195 (341)
Q Consensus 125 ~l~~~~~~g~~~i~~~~~~~~~--------~~~~~~~v~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~v~i~d~~~~~ 195 (341)
..++.++.|.+.||++...-.+ .-+...++..++. |.+.-+.++|+|- ...+++|.--+.|++|...++.
T Consensus 167 ~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~g-hk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~ 245 (440)
T KOG0302|consen 167 LCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNG-HKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGS 245 (440)
T ss_pred eeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecc-cCccceeeecccccccccccCccccceEeeeeccCc
Confidence 6778889999999998654321 1234455555554 5577789999993 2347777777889999988754
Q ss_pred eeeecCCCCCCccCccCCeeeeEEEEEecC-CCCEEEEEeCCCeEEEEEcCCCC-ceeEEEEecCCCeEEEEEcCCCceE
Q 019405 196 KIWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQVRLYDTSAQR-RPVMSFDFRETPIKAVAEEPDSFNI 273 (341)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l 273 (341)
-.. ... + -..|...|..++| +| ....|++|+.||+|+|||++.+. .+....+.|.+.|+.+.|+..-.+|
T Consensus 246 W~v--d~~---P-f~gH~~SVEDLqW--SptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lL 317 (440)
T KOG0302|consen 246 WKV--DQR---P-FTGHTKSVEDLQW--SPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLL 317 (440)
T ss_pred eee--cCc---c-ccccccchhhhcc--CCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCccee
Confidence 221 111 0 1125577999999 44 45689999999999999999863 3344457899999999999988899
Q ss_pred EEEeCCCCEEEEECCC---CeEEeEEeccccCceeEEEecCCC-CEEEEEeCCCcEEEEEcCC
Q 019405 274 YIGNGSGDLASVDIRT---GKLLGCFIGKCSGSIRSIARHPTL-PIIASCGLDSYLRFWDIKT 332 (341)
Q Consensus 274 ~~g~~dg~i~iwd~~~---~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~dg~v~iwd~~~ 332 (341)
|+|+.||+++|||+++ ++++..|+.| ..+|+++.|+|.. ..|++++.|.+|.+||+..
T Consensus 318 asG~DdGt~~iwDLR~~~~~~pVA~fk~H-k~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 318 ASGGDDGTLSIWDLRQFKSGQPVATFKYH-KAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred eecCCCceEEEEEhhhccCCCcceeEEec-cCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 9999999999999985 4678899988 9999999999954 5888899999999999864
No 145
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=3.3e-21 Score=147.99 Aligned_cols=270 Identities=11% Similarity=0.090 Sum_probs=186.2
Q ss_pred CceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcch---he
Q 019405 14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR---VA 90 (341)
Q Consensus 14 ~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~---~~ 90 (341)
.-|..+|+.|+.+++|+..+. +|.|.+...|+.|++++.-+.+.. ...|+.+|+++.|++++||.-...+.. ..
T Consensus 25 GRRmAtCSsDq~vkI~d~~~~-s~~W~~Ts~Wrah~~Si~rV~WAh--PEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~ 101 (361)
T KOG2445|consen 25 GRRMATCSSDQTVKIWDSTSD-SGTWSCTSSWRAHDGSIWRVVWAH--PEFGQVVATCSYDRTVSIWEEQEKSEEAHGRR 101 (361)
T ss_pred CceeeeccCCCcEEEEeccCC-CCceEEeeeEEecCCcEEEEEecC--ccccceEEEEecCCceeeeeecccccccccce
Confidence 357889999999999998544 799999999999999998887765 345889999999999999975311110 00
Q ss_pred eeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeec---------
Q 019405 91 ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA--------- 161 (341)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~--------- 161 (341)
...... .......+..+.|-+.... -.+++++.||.++||..-.. ..+..|.+.+
T Consensus 102 Wv~~tt--l~DsrssV~DV~FaP~hlG------LklA~~~aDG~lRIYEA~dp--------~nLs~W~Lq~Ei~~~~~pp 165 (361)
T KOG2445|consen 102 WVRRTT--LVDSRSSVTDVKFAPKHLG------LKLAAASADGILRIYEAPDP--------MNLSQWTLQHEIQNVIDPP 165 (361)
T ss_pred eEEEEE--eecCCcceeEEEecchhcc------eEEEEeccCcEEEEEecCCc--------cccccchhhhhhhhccCCc
Confidence 100000 0123466777777766552 28899999999999986432 2455565544
Q ss_pred ---CCceEEEEecCC---CCEEEEeeCC-----CeEEEEECCCCc-eeeecCCCCCCccCccCCeeeeEEEEEecC--CC
Q 019405 162 ---SGTIAFSKVDIS---EKFSLFGGKG-----VEVNVWDLDKCE-KIWTAKPPPKNSLGIFTPTWFTSAAFLSID--DH 227 (341)
Q Consensus 162 ---~~~i~~~~~~~~---~~~l~~~~~d-----~~v~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~ 227 (341)
..+..|+.|+|. ..+||.|+.+ +.++||...... ......... .+..+|+.++|.|+- .-
T Consensus 166 ~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~------d~~dpI~di~wAPn~Gr~y 239 (361)
T KOG2445|consen 166 GKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELP------DHTDPIRDISWAPNIGRSY 239 (361)
T ss_pred ccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcC------CCCCcceeeeeccccCCce
Confidence 345789999873 4678888776 478888765432 222221111 245789999995432 23
Q ss_pred CEEEEEeCCCeEEEEEcCCCC-------------------ceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECC
Q 019405 228 RKFVAGTNDHQVRLYDTSAQR-------------------RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR 288 (341)
Q Consensus 228 ~~l~~~~~d~~i~iwd~~~~~-------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~ 288 (341)
.+||+++.|| |+||.+.... ..+..+..|+.+|..+.|+-.|..|++.+.||.|++|...
T Consensus 240 ~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 240 HLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred eeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 5799999999 9999987311 1244566799999999999999999999999999999653
Q ss_pred ---CCeEEeEEeccccCceeEEEecC
Q 019405 289 ---TGKLLGCFIGKCSGSIRSIARHP 311 (341)
Q Consensus 289 ---~~~~~~~~~~~~~~~i~~~~~~~ 311 (341)
..++...+.. ++.+....|++
T Consensus 319 y~n~~kC~sv~~~--e~~~~~~~~~~ 342 (361)
T KOG2445|consen 319 YNNLWKCTSVLKA--EGSVTKPDFSQ 342 (361)
T ss_pred hhhhheeeeEEec--cCCCCCccccc
Confidence 3455555554 34444444443
No 146
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.90 E-value=5.2e-22 Score=161.60 Aligned_cols=275 Identities=9% Similarity=0.074 Sum_probs=195.3
Q ss_pred eeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEE--ccCCeEEEeeCCCCcchheeecc
Q 019405 17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVA--RKNGLTDILNPLNGDLRVAISNA 94 (341)
Q Consensus 17 ~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~--~~dg~i~iw~~~~~~~~~~~~~~ 94 (341)
+...+....+++|+..+. .+..+ +-.+..+-....|+..... +|+++ +.|..|++|.-. ++ +.++...
T Consensus 5 l~~aS~gd~~kl~D~s~~-~~~~~----~~~~t~~pg~~s~~w~~~n---~lvvas~~gdk~~~~~~K~-g~-~~~Vp~~ 74 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDL-ETKSE----YVHQTAEPGDFSFNWQRRN---FLVVASMAGDKVMRIKEKD-GK-TPEVPRV 74 (673)
T ss_pred eeeeccCCceEEeecccc-cCccc----cccCCCCCcceeeeccccc---eEEEeecCCceeEEEeccc-CC-CCcccee
Confidence 334445557899999887 23232 3223322222233332221 25554 457889999753 33 2222221
Q ss_pred CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC
Q 019405 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (341)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~ 174 (341)
.. ...+.-.|+....... ++++++..+.++|||+... .+..+-..|...|+++.++...
T Consensus 75 ~k----~~gd~~~Cv~~~s~S~--------y~~sgG~~~~Vkiwdl~~k---------l~hr~lkdh~stvt~v~YN~~D 133 (673)
T KOG4378|consen 75 RK----LTGDNAFCVACASQSL--------YEISGGQSGCVKIWDLRAK---------LIHRFLKDHQSTVTYVDYNNTD 133 (673)
T ss_pred ec----cccchHHHHhhhhcce--------eeeccCcCceeeehhhHHH---------HHhhhccCCcceeEEEEecCCc
Confidence 00 0113333444433333 8999999999999998622 3444445677889999999999
Q ss_pred CEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCC-EEEEEeCCCeEEEEEcCCCCceeEE
Q 019405 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQVRLYDTSAQRRPVMS 253 (341)
Q Consensus 175 ~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~ 253 (341)
.+||+++..|.|.+..+.++.....|....+ ..|.-+.| ++..+ +|.+++.+|.|.+||+.........
T Consensus 134 eyiAsvs~gGdiiih~~~t~~~tt~f~~~sg--------qsvRll~y--s~skr~lL~~asd~G~VtlwDv~g~sp~~~~ 203 (673)
T KOG4378|consen 134 EYIASVSDGGDIIIHGTKTKQKTTTFTIDSG--------QSVRLLRY--SPSKRFLLSIASDKGAVTLWDVQGMSPIFHA 203 (673)
T ss_pred ceeEEeccCCcEEEEecccCccccceecCCC--------CeEEEeec--ccccceeeEeeccCCeEEEEeccCCCcccch
Confidence 9999999999999999999888777766543 33667888 55444 5667899999999999975543444
Q ss_pred EEecCCCeEEEEEcCCC-ceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405 254 FDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (341)
Q Consensus 254 ~~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 332 (341)
...|..+...++|+|.. .+|++.+.|..|.+||.+..+....+.. ..+...++|.++|.+|+.|+..|.|..||++.
T Consensus 204 ~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y--~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 204 SEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY--SHPLSTVAFSECGTYLCAGNSKGELIAYDMRS 281 (673)
T ss_pred hhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeee--cCCcceeeecCCceEEEeecCCceEEEEeccc
Confidence 56699999999999965 6778899999999999998877777764 57899999999999999999999999999986
Q ss_pred Cc
Q 019405 333 RQ 334 (341)
Q Consensus 333 ~~ 334 (341)
.+
T Consensus 282 ~k 283 (673)
T KOG4378|consen 282 TK 283 (673)
T ss_pred CC
Confidence 43
No 147
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.90 E-value=3.2e-21 Score=162.80 Aligned_cols=297 Identities=12% Similarity=0.082 Sum_probs=212.9
Q ss_pred CCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchh----e---------
Q 019405 24 GLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRV----A--------- 90 (341)
Q Consensus 24 g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~----~--------- 90 (341)
|..+++.+.....+.++.+..+.+|...|..++|..-.. +.-+||++++|..||||.+.-+.... +
T Consensus 166 gs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~-~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~ 244 (764)
T KOG1063|consen 166 GSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGG-DDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNL 244 (764)
T ss_pred CcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCC-CcEEEEecCCceEEEEEEEEecCCccccccccccccccCC
Confidence 334555555543455667778899999999999987666 23469999999999999875332111 0
Q ss_pred --------ee--ccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeeccc---------------
Q 019405 91 --------IS--NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV--------------- 145 (341)
Q Consensus 91 --------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~--------------- 145 (341)
+. .....-..+|++.+.++.|.+... .|++++.|.++.+|.......
T Consensus 245 ~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~--------~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a 316 (764)
T KOG1063|consen 245 PVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGL--------DLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSA 316 (764)
T ss_pred ceeeeeeeEEEEEehhhhhcCcccceEEEEEccchh--------hheecccCcceEEEecCCccceEEEEEEeecccccc
Confidence 00 000011236889999999888776 899999999999998654421
Q ss_pred ---------------ccccCCceEEEEEee-------------cCCceEEEEecCCCCEEEEeeCCCeEEEEECCCC---
Q 019405 146 ---------------SAESSCSTVKSWNVC-------------ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC--- 194 (341)
Q Consensus 146 ---------------~~~~~~~~v~~~~~~-------------~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~--- 194 (341)
.+.+..|..++|... |-..|..++|+|.|++|++.+.|.+-++|---..
T Consensus 317 ~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~ 396 (764)
T KOG1063|consen 317 GGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQE 396 (764)
T ss_pred cceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccc
Confidence 012334555667622 1256899999999999999999988777643200
Q ss_pred --------------------------------ceeeecCCCC--------------------------------------
Q 019405 195 --------------------------------EKIWTAKPPP-------------------------------------- 204 (341)
Q Consensus 195 --------------------------------~~~~~~~~~~-------------------------------------- 204 (341)
+.++.+..+.
T Consensus 397 wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~ 476 (764)
T KOG1063|consen 397 WHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFP 476 (764)
T ss_pred eeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcc
Confidence 0000000000
Q ss_pred ------CC------------c----------------------cCccCCeeeeEEEEEecCCCCEEEEEeCCC-----eE
Q 019405 205 ------KN------------S----------------------LGIFTPTWFTSAAFLSIDDHRKFVAGTNDH-----QV 239 (341)
Q Consensus 205 ------~~------------~----------------------~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~-----~i 239 (341)
.. + --.+|-..|.+++. +|+++++|+++... .|
T Consensus 477 ~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~--s~~gnliASaCKS~~~ehAvI 554 (764)
T KOG1063|consen 477 GETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAI--SPTGNLIASACKSSLKEHAVI 554 (764)
T ss_pred cccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEe--cCCCCEEeehhhhCCccceEE
Confidence 00 0 01234567899999 89999999988653 58
Q ss_pred EEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeE----EeEEeccccCceeEEEecCCCCE
Q 019405 240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL----LGCFIGKCSGSIRSIARHPTLPI 315 (341)
Q Consensus 240 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~ 315 (341)
++|+..+..+ ++.+.+|.-.|+.++||||+++|++.+.|.++.+|....... ....+.| ..-|++..|+|++.+
T Consensus 555 ~lw~t~~W~~-~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~H-tRIIWdcsW~pde~~ 632 (764)
T KOG1063|consen 555 RLWNTANWLQ-VQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAH-TRIIWDCSWSPDEKY 632 (764)
T ss_pred EEEeccchhh-hheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhcccccc-ceEEEEcccCcccce
Confidence 9999988665 778999999999999999999999999999999998764322 2235566 889999999999999
Q ss_pred EEEEeCCCcEEEEEcCCC
Q 019405 316 IASCGLDSYLRFWDIKTR 333 (341)
Q Consensus 316 l~s~~~dg~v~iwd~~~~ 333 (341)
++|+|.|.+|++|.....
T Consensus 633 FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 633 FATASRDKKVKVWEEPDL 650 (764)
T ss_pred eEEecCCceEEEEeccCc
Confidence 999999999999998877
No 148
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=3.8e-22 Score=148.32 Aligned_cols=193 Identities=15% Similarity=0.153 Sum_probs=152.4
Q ss_pred eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecC--CCCEEEEeeCCCeEEEEECCCCceeeecCC
Q 019405 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI--SEKFSLFGGKGVEVNVWDLDKCEKIWTAKP 202 (341)
Q Consensus 125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~ 202 (341)
+|++++.|++++|+.++.+.. ...+... ..|.++|..++|.. -|.+||+++.||.|.||.-++++-.. ...
T Consensus 25 rlATcsSD~tVkIf~v~~n~~-----s~ll~~L-~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k-~~e 97 (299)
T KOG1332|consen 25 RLATCSSDGTVKIFEVRNNGQ-----SKLLAEL-TGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTK-AYE 97 (299)
T ss_pred eeeeecCCccEEEEEEcCCCC-----ceeeeEe-cCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhh-hhh
Confidence 899999999999999876542 1122222 35789999999965 78999999999999999988773221 221
Q ss_pred CCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCC--CceeEEEEecCCCeEEEEEcCC---C-------
Q 019405 203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ--RRPVMSFDFRETPIKAVAEEPD---S------- 270 (341)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~---~------- 270 (341)
+. .|...|++++|.|+.-|-.|++++.||.|.+.+.+.. ....+....|.-.|++++|.|- |
T Consensus 98 ~~------~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~ 171 (299)
T KOG1332|consen 98 HA------AHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGP 171 (299)
T ss_pred hh------hhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCc
Confidence 11 1447799999977777889999999999999998864 1223445679899999999985 4
Q ss_pred ----ceEEEEeCCCCEEEEECCCCe--EEeEEeccccCceeEEEecCCC----CEEEEEeCCCcEEEEEcC
Q 019405 271 ----FNIYIGNGSGDLASVDIRTGK--LLGCFIGKCSGSIRSIARHPTL----PIIASCGLDSYLRFWDIK 331 (341)
Q Consensus 271 ----~~l~~g~~dg~i~iwd~~~~~--~~~~~~~~~~~~i~~~~~~~~~----~~l~s~~~dg~v~iwd~~ 331 (341)
+.|++|+.|+.|+||+..+++ +-.++.+| .+.|+.++|.|.- ..||++|.||+|.||..+
T Consensus 172 ~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H-~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~ 241 (299)
T KOG1332|consen 172 AAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGH-KDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKD 241 (299)
T ss_pred ccccceeeccCCccceeeeecCCcchhhhhhhhhc-chhhhhhhhccccCCCceeeEEecCCCcEEEEEec
Confidence 569999999999999998763 34558888 9999999999964 379999999999999765
No 149
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.89 E-value=4.1e-21 Score=156.45 Aligned_cols=211 Identities=13% Similarity=0.230 Sum_probs=167.3
Q ss_pred eEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccc
Q 019405 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS 146 (341)
Q Consensus 67 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~ 146 (341)
|+++|+..+.|+|||++...+.+.++. |.+.++++.+...+. ++++++..|.+.|..+......
T Consensus 93 y~~sgG~~~~Vkiwdl~~kl~hr~lkd--------h~stvt~v~YN~~De--------yiAsvs~gGdiiih~~~t~~~t 156 (673)
T KOG4378|consen 93 YEISGGQSGCVKIWDLRAKLIHRFLKD--------HQSTVTYVDYNNTDE--------YIASVSDGGDIIIHGTKTKQKT 156 (673)
T ss_pred eeeccCcCceeeehhhHHHHHhhhccC--------CcceeEEEEecCCcc--------eeEEeccCCcEEEEecccCccc
Confidence 899999999999999985555566665 457788888877666 9999999999999998765432
Q ss_pred cccCCceEEEEEeecCCceEEEEecCCCCE-EEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecC
Q 019405 147 AESSCSTVKSWNVCASGTIAFSKVDISEKF-SLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID 225 (341)
Q Consensus 147 ~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 225 (341)
..+....+..+..+.+++..+. |.+++.+|.|.+||+....++..+... |..+...++|. +.
T Consensus 157 --------t~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~--------HsAP~~gicfs-ps 219 (673)
T KOG4378|consen 157 --------TTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEA--------HSAPCRGICFS-PS 219 (673)
T ss_pred --------cceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhh--------ccCCcCcceec-CC
Confidence 2334444567788999997765 557899999999999877776655432 34668889995 23
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCC-eEEeEEeccccCce
Q 019405 226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG-KLLGCFIGKCSGSI 304 (341)
Q Consensus 226 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~~~~~~i 304 (341)
+..+|++.+.|..|.+||.+..+. ...+. ...+...++|+++|.+|++|...|.|..||++.. .++..+..| ...|
T Consensus 220 ne~l~vsVG~Dkki~~yD~~s~~s-~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah-~~sV 296 (673)
T KOG4378|consen 220 NEALLVSVGYDKKINIYDIRSQAS-TDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAH-DASV 296 (673)
T ss_pred ccceEEEecccceEEEeecccccc-cceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeec-ccce
Confidence 556888999999999999997543 55554 3468999999999999999999999999999854 567788887 8889
Q ss_pred eEEEecCCC
Q 019405 305 RSIARHPTL 313 (341)
Q Consensus 305 ~~~~~~~~~ 313 (341)
++++|-|..
T Consensus 297 t~vafq~s~ 305 (673)
T KOG4378|consen 297 TRVAFQPSP 305 (673)
T ss_pred eEEEeeecc
Confidence 999998764
No 150
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=1.1e-19 Score=151.26 Aligned_cols=233 Identities=11% Similarity=0.081 Sum_probs=164.7
Q ss_pred ceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccccccccee-EEEcccceeEEEEeeecc
Q 019405 66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL-LTCTTKGKASMRSIEVTK 144 (341)
Q Consensus 66 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~g~~~i~~~~~~~ 144 (341)
.++++++.|+.|++||+.+++.+..+..+ ..+.++.+.+... .+ +++..++.+.+|++....
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~---------~~~~~l~~~~dg~--------~l~~~~~~~~~v~~~d~~~~~ 64 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVG---------QRPRGITLSKDGK--------LLYVCASDSDTIQVIDLATGE 64 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECC---------CCCCceEECCCCC--------EEEEEECCCCeEEEEECCCCc
Confidence 46889999999999999988877777642 2234555544333 44 667788999999975432
Q ss_pred cccccCCceEEEEEeecCCceEEEEecCCCCEEEE-eeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEe
Q 019405 145 VSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLF-GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS 223 (341)
Q Consensus 145 ~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 223 (341)
.+..+. ....+..+.++|+++.+++ ++.++.|++||+++.+.+..+... ..+.+++|
T Consensus 65 --------~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~----------~~~~~~~~-- 122 (300)
T TIGR03866 65 --------VIGTLP--SGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG----------VEPEGMAV-- 122 (300)
T ss_pred --------EEEecc--CCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC----------CCcceEEE--
Confidence 222222 2234567889999987765 456899999999988776665432 12567888
Q ss_pred cCCCCEEEEEeCCC-eEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEE-eCCCCEEEEECCCCeEEeEEeccc-
Q 019405 224 IDDHRKFVAGTNDH-QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIG-NGSGDLASVDIRTGKLLGCFIGKC- 300 (341)
Q Consensus 224 ~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g-~~dg~i~iwd~~~~~~~~~~~~~~- 300 (341)
+|++.+++++..++ .+.+||..+.+. +.... .......++|+|++++|+++ ..++.|++||+++++.+..+..+.
T Consensus 123 ~~dg~~l~~~~~~~~~~~~~d~~~~~~-~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~ 200 (300)
T TIGR03866 123 SPDGKIVVNTSETTNMAHFIDTKTYEI-VDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIP 200 (300)
T ss_pred CCCCCEEEEEecCCCeEEEEeCCCCeE-EEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeeccc
Confidence 89999999888765 567789887553 33332 23355789999999888655 468999999999998877664320
Q ss_pred -----cCceeEEEecCCCCEEEE-EeCCCcEEEEEcCCCceeeee
Q 019405 301 -----SGSIRSIARHPTLPIIAS-CGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 301 -----~~~i~~~~~~~~~~~l~s-~~~dg~v~iwd~~~~~~~~~~ 339 (341)
......++|+|++++++. .+.++.+.+||+++++.+..+
T Consensus 201 ~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~ 245 (300)
T TIGR03866 201 GVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYL 245 (300)
T ss_pred ccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence 112356889999997544 455678999999998876543
No 151
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=8.3e-21 Score=152.45 Aligned_cols=217 Identities=13% Similarity=0.201 Sum_probs=162.6
Q ss_pred CceeeEeeeeccccccccccceeEEEcccceeEEEEeeeccccc-----ccCCceE------EEEE-eecCCceEEEEec
Q 019405 104 DGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSA-----ESSCSTV------KSWN-VCASGTIAFSKVD 171 (341)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~-----~~~~~~v------~~~~-~~~~~~i~~~~~~ 171 (341)
....|+.|... +...+...++++.|+.+..|.|||+.....+. ++..... +-.. ..|...|..++|+
T Consensus 174 afPLC~ewld~-~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n 252 (463)
T KOG0270|consen 174 AFPLCIEWLDH-GSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWN 252 (463)
T ss_pred Ccchhhhhhhc-CCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhc
Confidence 33467777765 22334456699999999999999987543221 0000000 0011 1233456677776
Q ss_pred CC-CCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCce
Q 019405 172 IS-EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP 250 (341)
Q Consensus 172 ~~-~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 250 (341)
.. .+.||+||.|.+|++||+.++++...+..+. ..|.++.|+ +.....|++|+.|++|.+.|.+.....
T Consensus 253 ~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~---------k~Vq~l~wh-~~~p~~LLsGs~D~~V~l~D~R~~~~s 322 (463)
T KOG0270|consen 253 RNFRNVLASGSADKTVKLWDVDTGKPKSSITHHG---------KKVQTLEWH-PYEPSVLLSGSYDGTVALKDCRDPSNS 322 (463)
T ss_pred cccceeEEecCCCceEEEEEcCCCCcceehhhcC---------CceeEEEec-CCCceEEEeccccceEEeeeccCcccc
Confidence 54 4689999999999999999999998888654 559999997 557789999999999999999964332
Q ss_pred eEEEEecCCCeEEEEEcCCC-ceEEEEeCCCCEEEEECCCC-eEEeEEeccccCceeEEEecCCCC-EEEEEeCCCcEEE
Q 019405 251 VMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTG-KLLGCFIGKCSGSIRSIARHPTLP-IIASCGLDSYLRF 327 (341)
Q Consensus 251 ~~~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~iwd~~~~-~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~dg~v~i 327 (341)
-..++ -.+.|-.++|.|.. ..++++..||+|+-+|+|.. +++.+++.| .++|.++++++.-+ ++++++.|+.|++
T Consensus 323 ~~~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AH-d~~ISgl~~n~~~p~~l~t~s~d~~Vkl 400 (463)
T KOG0270|consen 323 GKEWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAH-DDEISGLSVNIQTPGLLSTASTDKVVKL 400 (463)
T ss_pred CceEE-eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEec-cCCcceEEecCCCCcceeeccccceEEE
Confidence 33333 34678999999866 56778889999999999975 899999998 99999999998665 7899999999999
Q ss_pred EEcCCC
Q 019405 328 WDIKTR 333 (341)
Q Consensus 328 wd~~~~ 333 (341)
|++..-
T Consensus 401 w~~~~~ 406 (463)
T KOG0270|consen 401 WKFDVD 406 (463)
T ss_pred EeecCC
Confidence 998643
No 152
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.88 E-value=1.7e-20 Score=151.28 Aligned_cols=260 Identities=14% Similarity=0.118 Sum_probs=189.1
Q ss_pred CCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCc--chheeeccCCCCCCCCCCceeeEeeeeccccccccccce
Q 019405 48 PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD--LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT 125 (341)
Q Consensus 48 ~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (341)
+.+.+++++|-|... -+++|+|+.-|.|-+||+.+.+ .-..+.. .+|..++.++.+.+.+.. .
T Consensus 185 ~~~Rit~l~fHPt~~--~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f------~~hs~~Vs~l~F~P~n~s-------~ 249 (498)
T KOG4328|consen 185 TDRRITSLAFHPTEN--RKLVAVGDKGGQVGLWNFGTQEKDKDGVYLF------TPHSGPVSGLKFSPANTS-------Q 249 (498)
T ss_pred cccceEEEEecccCc--ceEEEEccCCCcEEEEecCCCCCccCceEEe------ccCCccccceEecCCChh-------h
Confidence 667788888777665 2379999999999999995322 1222222 357788999999887764 8
Q ss_pred eEEEcccceeEEEEeeecccccccCCceEEEEEe-ecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCce-eeecCCC
Q 019405 126 LLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV-CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK-IWTAKPP 203 (341)
Q Consensus 126 l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~-~~~~~~~ 203 (341)
+++.+.||+++.-|++...... ++.. .....+..++++.+...++.+..=|...+||++++.. ...+..|
T Consensus 250 i~ssSyDGtiR~~D~~~~i~e~--------v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh 321 (498)
T KOG4328|consen 250 IYSSSYDGTIRLQDFEGNISEE--------VLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLH 321 (498)
T ss_pred eeeeccCceeeeeeecchhhHH--------HhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhh
Confidence 9999999999999987553211 1111 1123456677877777777777777999999997544 4444444
Q ss_pred CCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCC--c-eeEEEEecCCCeEEEEEcCCCceEEEEeCCC
Q 019405 204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR--R-PVMSFDFRETPIKAVAEEPDSFNIYIGNGSG 280 (341)
Q Consensus 204 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~-~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg 280 (341)
. ..|.+++++| -...+|++++.|++++|||++... . |+.....|..+|.+..|||.+-.|++.+.|+
T Consensus 322 ~---------kKI~sv~~NP-~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~ 391 (498)
T KOG4328|consen 322 K---------KKITSVALNP-VCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDN 391 (498)
T ss_pred h---------cccceeecCC-CCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCC
Confidence 3 3489999942 245678999999999999998632 2 3445556999999999999987899999999
Q ss_pred CEEEEECC----CCeEEeEEecccc----CceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeeec
Q 019405 281 DLASVDIR----TGKLLGCFIGKCS----GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVC 340 (341)
Q Consensus 281 ~i~iwd~~----~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 340 (341)
.|+|||.. ...++..+.-.+. -.....+|.|+..+++.|-.-..|-|+|-+.++.+.+++
T Consensus 392 ~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~ 459 (498)
T KOG4328|consen 392 EIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELH 459 (498)
T ss_pred ceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeecc
Confidence 99999983 3333433331101 134557899999999999999999999999998777654
No 153
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.6e-20 Score=146.12 Aligned_cols=280 Identities=12% Similarity=0.106 Sum_probs=195.8
Q ss_pred eeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccC
Q 019405 16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAG 95 (341)
Q Consensus 16 ~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 95 (341)
+++++-..|.+++++.... ..+..|.++...+..+.|..+..|+ .+.+++.||+|++||++.......+....
T Consensus 42 ~vav~lSngsv~lyd~~tg-----~~l~~fk~~~~~~N~vrf~~~ds~h--~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~ 114 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTG-----QLLEEFKGPPATTNGVRFISCDSPH--GVISCSSDGTVRLWDIRSQAESARISWTQ 114 (376)
T ss_pred eEEEEecCCeEEEEeccch-----hhhheecCCCCcccceEEecCCCCC--eeEEeccCCeEEEEEeecchhhhheeccC
Confidence 4677778999999998875 5677888888888899998876655 69999999999999999876655554321
Q ss_pred CCCCCCCCCceeeEeeeeccccccccccceeEEEcc----cceeEEEEeeecccccccCCceEEEEEeecCCceEEEEec
Q 019405 96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT----KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD 171 (341)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~ 171 (341)
. ...+.+++....... .++.+++ +-.+.+||++... +.++.|.-.|...|+++.|+
T Consensus 115 ~-----~~~~f~~ld~nck~~--------ii~~GtE~~~s~A~v~lwDvR~~q-------q~l~~~~eSH~DDVT~lrFH 174 (376)
T KOG1188|consen 115 Q-----SGTPFICLDLNCKKN--------IIACGTELTRSDASVVLWDVRSEQ-------QLLRQLNESHNDDVTQLRFH 174 (376)
T ss_pred C-----CCCcceEeeccCcCC--------eEEeccccccCceEEEEEEecccc-------chhhhhhhhccCcceeEEec
Confidence 1 124566665543333 5555543 5678899997644 24888888899999999999
Q ss_pred CC-CCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCce
Q 019405 172 IS-EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP 250 (341)
Q Consensus 172 ~~-~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 250 (341)
|. .++|++|+.||.|.+||++....--.+.. -+.+...|.++.|+ ++..+.|.+-+...+..+|+++.+..
T Consensus 175 P~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~------viN~~sSI~~igw~-~~~ykrI~clTH~Etf~~~ele~~~~- 246 (376)
T KOG1188|consen 175 PSDPNLLLSGSVDGLVNLFDTKKDNEEDALLH------VINHGSSIHLIGWL-SKKYKRIMCLTHMETFAIYELEDGSE- 246 (376)
T ss_pred CCCCCeEEeecccceEEeeecCCCcchhhHHH------hhcccceeeeeeee-cCCcceEEEEEccCceeEEEccCCCh-
Confidence 94 58999999999999999975422111111 11123569999996 55556788889999999999998653
Q ss_pred eEEEEec------------CCCeEEEEEcC-CCceEEEEeC-CCCEEEEECC---C---CeEEeEEeccccCceeEEEec
Q 019405 251 VMSFDFR------------ETPIKAVAEEP-DSFNIYIGNG-SGDLASVDIR---T---GKLLGCFIGKCSGSIRSIARH 310 (341)
Q Consensus 251 ~~~~~~~------------~~~v~~~~~~~-~~~~l~~g~~-dg~i~iwd~~---~---~~~~~~~~~~~~~~i~~~~~~ 310 (341)
...+... ...+-. ..+| +...++.++. -|...++-+. + .+.+..+.++|..-|+++.|.
T Consensus 247 ~~~~~~~~~~~~d~r~~~~~dY~I~-~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~ 325 (376)
T KOG1188|consen 247 ETWLENPDVSADDLRKEDNCDYVIN-EHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFD 325 (376)
T ss_pred hhcccCccchhhhHHhhhhhhheee-cccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhh
Confidence 3222211 001111 1223 3345555444 5666665433 2 345667888668889999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcC
Q 019405 311 PTLPIIASCGLDSYLRFWDIK 331 (341)
Q Consensus 311 ~~~~~l~s~~~dg~v~iwd~~ 331 (341)
..+.++.||+.||.+.+|..+
T Consensus 326 ~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 326 VKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred cccceeeccCCCceEEEEecC
Confidence 889999999999999999853
No 154
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=4.6e-20 Score=148.94 Aligned_cols=248 Identities=15% Similarity=0.143 Sum_probs=184.7
Q ss_pred CCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEE
Q 019405 49 HSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLT 128 (341)
Q Consensus 49 ~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 128 (341)
.+.++++.|-+. .++|++|+.|++++||.++ |+.-..+.... -..-++.+..+.+.+.. .+++
T Consensus 213 ~~~I~sv~FHp~----~plllvaG~d~~lrifqvD-Gk~N~~lqS~~-----l~~fPi~~a~f~p~G~~-------~i~~ 275 (514)
T KOG2055|consen 213 HGGITSVQFHPT----APLLLVAGLDGTLRIFQVD-GKVNPKLQSIH-----LEKFPIQKAEFAPNGHS-------VIFT 275 (514)
T ss_pred cCCceEEEecCC----CceEEEecCCCcEEEEEec-CccChhheeee-----eccCccceeeecCCCce-------EEEe
Confidence 456777776554 4489999999999999885 33322222210 02245666666654432 7888
Q ss_pred EcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCcc
Q 019405 129 CTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSL 208 (341)
Q Consensus 129 ~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~ 208 (341)
++.......||+...+.. .+..-.......+....+++++++|+..+..|.|.+....+++.+..++..
T Consensus 276 s~rrky~ysyDle~ak~~------k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Kie----- 344 (514)
T KOG2055|consen 276 SGRRKYLYSYDLETAKVT------KLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIE----- 344 (514)
T ss_pred cccceEEEEeeccccccc------cccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeec-----
Confidence 888899999999755422 111111112345677888999999999999999999999999988877754
Q ss_pred CccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCe--EEEEEcCCCceEEEEeCCCCEEEEE
Q 019405 209 GIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPI--KAVAEEPDSFNIYIGNGSGDLASVD 286 (341)
Q Consensus 209 ~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~g~~dg~i~iwd 286 (341)
+.|..++| +.+++.|++++.+|.|.+||++...+ ++.+... +.| ++++.++++.+||+|+..|.|.|||
T Consensus 345 -----G~v~~~~f--sSdsk~l~~~~~~GeV~v~nl~~~~~-~~rf~D~-G~v~gts~~~S~ng~ylA~GS~~GiVNIYd 415 (514)
T KOG2055|consen 345 -----GVVSDFTF--SSDSKELLASGGTGEVYVWNLRQNSC-LHRFVDD-GSVHGTSLCISLNGSYLATGSDSGIVNIYD 415 (514)
T ss_pred -----cEEeeEEE--ecCCcEEEEEcCCceEEEEecCCcce-EEEEeec-CccceeeeeecCCCceEEeccCcceEEEec
Confidence 55899999 78899999999999999999998754 6666643 333 5677889999999999999999999
Q ss_pred CCC------CeEEeEEeccccCceeEEEecCCCCEEEEEe--CCCcEEEEEcCCCc
Q 019405 287 IRT------GKLLGCFIGKCSGSIRSIARHPTLPIIASCG--LDSYLRFWDIKTRQ 334 (341)
Q Consensus 287 ~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~--~dg~v~iwd~~~~~ 334 (341)
.++ .+++..+..- ...|++|.|+|+.++||.+| .+..+|+-.+.+-.
T Consensus 416 ~~s~~~s~~PkPik~~dNL-tt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~T 470 (514)
T KOG2055|consen 416 GNSCFASTNPKPIKTVDNL-TTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCT 470 (514)
T ss_pred cchhhccCCCCchhhhhhh-heeeeeeeeCcchhhhhhhhhccccceEEEecccee
Confidence 753 3566666655 67899999999999988877 56688888877643
No 155
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.87 E-value=4.7e-20 Score=142.66 Aligned_cols=262 Identities=14% Similarity=0.137 Sum_probs=175.1
Q ss_pred CCCCCceEEEEccCCeEEEeeCCCCcchhe------eeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccce
Q 019405 61 DSQNDPLLAVARKNGLTDILNPLNGDLRVA------ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGK 134 (341)
Q Consensus 61 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 134 (341)
++|+|..|++-+.|..+++|++...-.-.. ++.+. .-.-.....+...+|++..+... ...+.+++.+.+.-
T Consensus 57 WSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~-~~r~~eg~tvydy~wYs~M~s~q-P~t~l~a~ssr~~P 134 (406)
T KOG2919|consen 57 WSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHL-SYRYQEGETVYDYCWYSRMKSDQ-PSTNLFAVSSRDQP 134 (406)
T ss_pred eCCCCceEEeecccCeeeEEecChhhcccCCCCccccccce-eEEeccCCEEEEEEeeeccccCC-CccceeeeccccCc
Confidence 455555899999999999999853211111 00000 00012345566667775433211 12337777788888
Q ss_pred eEEEEeeecccccccCCceEEEEEeec-CCceEEEEecCCCCEEEEeeCCCeEEEEEC-CCCceeeecCCCCCCccCccC
Q 019405 135 ASMRSIEVTKVSAESSCSTVKSWNVCA-SGTIAFSKVDISEKFSLFGGKGVEVNVWDL-DKCEKIWTAKPPPKNSLGIFT 212 (341)
Q Consensus 135 ~~i~~~~~~~~~~~~~~~~v~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~-~~~~~~~~~~~~~~~~~~~~~ 212 (341)
|++|+.-.++... .-+.++... -....+++|+|||..|++|.. ..|++||+ +.|+........... ....
T Consensus 135 Ih~wdaftG~lra-----Sy~~ydh~de~taAhsL~Fs~DGeqlfaGyk-rcirvFdt~RpGr~c~vy~t~~~~--k~gq 206 (406)
T KOG2919|consen 135 IHLWDAFTGKLRA-----SYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK-RCIRVFDTSRPGRDCPVYTTVTKG--KFGQ 206 (406)
T ss_pred eeeeecccccccc-----chhhhhhHHhhhhheeEEecCCCCeEeeccc-ceEEEeeccCCCCCCcchhhhhcc--cccc
Confidence 8888875544322 122233211 124569999999999997665 58999999 555433322221111 1112
Q ss_pred CeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeC-CCCEEEEECCC-C
Q 019405 213 PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SGDLASVDIRT-G 290 (341)
Q Consensus 213 ~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-dg~i~iwd~~~-~ 290 (341)
.+-+.+++|+ +.+...++.++....+-||.-.. ..|+..+.+|.+.|+.++|.++|..|++|.. |..|..||++. .
T Consensus 207 ~giisc~a~s-P~~~~~~a~gsY~q~~giy~~~~-~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~ 284 (406)
T KOG2919|consen 207 KGIISCFAFS-PMDSKTLAVGSYGQRVGIYNDDG-RRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR 284 (406)
T ss_pred cceeeeeecc-CCCCcceeeecccceeeeEecCC-CCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc
Confidence 3568899994 23455899999888888887665 4479999999999999999999999999885 77899999985 4
Q ss_pred eEEeEEeccccCceeEEEe--cCCCCEEEEEeCCCcEEEEEcCC-Cc
Q 019405 291 KLLGCFIGKCSGSIRSIAR--HPTLPIIASCGLDSYLRFWDIKT-RQ 334 (341)
Q Consensus 291 ~~~~~~~~~~~~~i~~~~~--~~~~~~l~s~~~dg~v~iwd~~~-~~ 334 (341)
.++..+..|..+.-..|.| .|++++|++|+.||.|++||++. |.
T Consensus 285 ~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn 331 (406)
T KOG2919|consen 285 DPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN 331 (406)
T ss_pred chhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCC
Confidence 5677777773334445555 57899999999999999999987 44
No 156
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.87 E-value=1.7e-20 Score=157.34 Aligned_cols=117 Identities=21% Similarity=0.280 Sum_probs=100.7
Q ss_pred eeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCC------ceeEEEEecCCCeEEEEEcCCC-ceEEEEeCCCCEEEEECC
Q 019405 216 FTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR------RPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIR 288 (341)
Q Consensus 216 v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~------~~~~~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~iwd~~ 288 (341)
|+.+.|. +.|...|++++.||.|++|.+..+. .|...++.|...|+++.|+|-. ..|+++++|-+|++||++
T Consensus 630 vtDl~Wd-PFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~ 708 (1012)
T KOG1445|consen 630 VTDLHWD-PFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA 708 (1012)
T ss_pred eeecccC-CCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence 4455553 2345679999999999999987532 2567788899999999999943 689999999999999999
Q ss_pred CCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCc
Q 019405 289 TGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ 334 (341)
Q Consensus 289 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 334 (341)
+++....+.+| .+.|.+++|+|+|+.+++.+.||+|++|+.++++
T Consensus 709 ~~~~~~~l~gH-tdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e 753 (1012)
T KOG1445|consen 709 NAKLYSRLVGH-TDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSRE 753 (1012)
T ss_pred hhhhhheeccC-cCceeEEEECCCCcceeeeecCceEEEeCCCCCC
Confidence 99999999998 9999999999999999999999999999988754
No 157
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.87 E-value=2.3e-19 Score=151.69 Aligned_cols=284 Identities=12% Similarity=0.090 Sum_probs=206.4
Q ss_pred ceeeeecCCCCeEEEEEecCccCccceeeeccCCCC---CceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCc---ch
Q 019405 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHS---SNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD---LR 88 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~---~~ 88 (341)
+.+++++.|.++.+|+-.+. +|+|..+.++++-.+ .-...-|+++. +.+++-+..|-.++|..++.. ..
T Consensus 280 ~~LLSASaDksmiiW~pd~~-tGiWv~~vRlGe~gg~a~GF~g~lw~~n~----~~ii~~g~~Gg~hlWkt~d~~~w~~~ 354 (764)
T KOG1063|consen 280 LDLLSASADKSMIIWKPDEN-TGIWVDVVRLGEVGGSAGGFWGGLWSPNS----NVIIAHGRTGGFHLWKTKDKTFWTQE 354 (764)
T ss_pred hhheecccCcceEEEecCCc-cceEEEEEEeecccccccceeeEEEcCCC----CEEEEecccCcEEEEeccCccceeec
Confidence 57899999999999998876 799988888876442 22333445444 478888999999999833321 12
Q ss_pred heeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecc------------------------
Q 019405 89 VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK------------------------ 144 (341)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~------------------------ 144 (341)
..+ ++|-+.+..+.|-+.+. ++++++.|-+-+++.--..+
T Consensus 355 ~~i--------SGH~~~V~dv~W~psGe--------flLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~ 418 (764)
T KOG1063|consen 355 PVI--------SGHVDGVKDVDWDPSGE--------FLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE 418 (764)
T ss_pred ccc--------ccccccceeeeecCCCC--------EEEEeccccceeeecccccccceeeecccccccccceeeehccC
Confidence 222 34567777777766666 77777777777666432000
Q ss_pred ---cccccCCceEEEEEeec------------------------------------------------------------
Q 019405 145 ---VSAESSCSTVKSWNVCA------------------------------------------------------------ 161 (341)
Q Consensus 145 ---~~~~~~~~~v~~~~~~~------------------------------------------------------------ 161 (341)
-.++.+++.+|+|+...
T Consensus 419 ~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~ 498 (764)
T KOG1063|consen 419 DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPC 498 (764)
T ss_pred CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCch
Confidence 01223333333333211
Q ss_pred --------------------------CCceEEEEecCCCCEEEEeeCCC-----eEEEEECCCCceeeecCCCCCCccCc
Q 019405 162 --------------------------SGTIAFSKVDISEKFSLFGGKGV-----EVNVWDLDKCEKIWTAKPPPKNSLGI 210 (341)
Q Consensus 162 --------------------------~~~i~~~~~~~~~~~l~~~~~d~-----~v~i~d~~~~~~~~~~~~~~~~~~~~ 210 (341)
+-.|++++.+|+++++|++.... .|++|+..+-.....+..|.
T Consensus 499 ~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~Hs------ 572 (764)
T KOG1063|consen 499 ELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHS------ 572 (764)
T ss_pred hccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccc------
Confidence 12689999999999999987654 48999998877777777765
Q ss_pred cCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCce---eEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEEC
Q 019405 211 FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP---VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDI 287 (341)
Q Consensus 211 ~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~ 287 (341)
-.|+.++| +|++++|++.+.|+++.+|........ ....+.|..-|+++.|+|++.++++++.|.+|++|..
T Consensus 573 ---LTVT~l~F--Spdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~ 647 (764)
T KOG1063|consen 573 ---LTVTRLAF--SPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEE 647 (764)
T ss_pred ---eEEEEEEE--CCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEec
Confidence 45999999 999999999999999999998654322 2336679999999999999999999999999999998
Q ss_pred CCC--eEEeE--EeccccCceeEEEecCC-----CCEEEEEeCCCcEEEEEcC
Q 019405 288 RTG--KLLGC--FIGKCSGSIRSIARHPT-----LPIIASCGLDSYLRFWDIK 331 (341)
Q Consensus 288 ~~~--~~~~~--~~~~~~~~i~~~~~~~~-----~~~l~s~~~dg~v~iwd~~ 331 (341)
... +.+.. ...+ ...|+.++|.|- +..++.|-..|.|.+|...
T Consensus 648 ~~~~d~~i~~~a~~~~-~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 648 PDLRDKYISRFACLKF-SLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred cCchhhhhhhhchhcc-CCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 876 44433 2233 789999999872 2267788889999999865
No 158
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.86 E-value=1.1e-19 Score=138.64 Aligned_cols=287 Identities=14% Similarity=0.091 Sum_probs=195.5
Q ss_pred ceeeeec----CCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccC-------CeEEEeeCC
Q 019405 15 LRALTFD----SLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKN-------GLTDILNPL 83 (341)
Q Consensus 15 ~~~~~~~----~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~d-------g~i~iw~~~ 83 (341)
++++.|. +|..|.+.++..+...+ ....|..|.+.|..++-+|.... +|++...+ -.+.||.+.
T Consensus 27 icFlvgTnslK~dNqVhll~~d~e~s~l--~skvf~h~agEvw~las~P~d~~---ilaT~yn~~s~s~vl~~aaiw~ip 101 (370)
T KOG1007|consen 27 ICFLVGTNSLKEDNQVHLLRLDSEGSEL--LSKVFFHHAGEVWDLASSPFDQR---ILATVYNDTSDSGVLTGAAIWQIP 101 (370)
T ss_pred eEEEEeccccCCcceeEEEEecCccchh--hhhhhhcCCcceehhhcCCCCCc---eEEEEEeccCCCcceeeEEEEecc
Confidence 5555553 46777888877763332 23356667888888876665552 45554332 347899886
Q ss_pred CCcchhe---eeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEE-EEe
Q 019405 84 NGDLRVA---ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKS-WNV 159 (341)
Q Consensus 84 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~-~~~ 159 (341)
....... ++....... .+-+.+.|+.|-+... .+++- .+..+.+|+++.++... ..+.. -..
T Consensus 102 e~~~~S~~~tlE~v~~Ldt-eavg~i~cvew~Pns~--------klasm-~dn~i~l~~l~ess~~v----aev~ss~s~ 167 (370)
T KOG1007|consen 102 EPLGQSNSSTLECVASLDT-EAVGKINCVEWEPNSD--------KLASM-DDNNIVLWSLDESSKIV----AEVLSSESA 167 (370)
T ss_pred cccCccccchhhHhhcCCH-HHhCceeeEEEcCCCC--------eeEEe-ccCceEEEEcccCcchh----eeecccccc
Confidence 4322111 111111100 1235788888877554 44444 48999999998776411 00000 001
Q ss_pred ecCCceEEEEecC--CCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCC-EEEEEeCC
Q 019405 160 CASGTIAFSKVDI--SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTND 236 (341)
Q Consensus 160 ~~~~~i~~~~~~~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d 236 (341)
.+....++-+|+| +++.+++. .|+++..||+++..+...+.... ...|..+.| +|+.. +|++++.|
T Consensus 168 e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAH--------gq~vrdlDf--Npnkq~~lvt~gDd 236 (370)
T KOG1007|consen 168 EMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAH--------GQRVRDLDF--NPNKQHILVTCGDD 236 (370)
T ss_pred cccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhh--------cceeeeccC--CCCceEEEEEcCCC
Confidence 1233456678887 67777764 56799999999988777766543 255889999 56554 67889999
Q ss_pred CeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCC-ceEEEEeCCCCEEEEECCC--------------------------
Q 019405 237 HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRT-------------------------- 289 (341)
Q Consensus 237 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~iwd~~~-------------------------- 289 (341)
|.|++||.+..+.|++.+.+|...|+++.|+|.- ++|++|+.|..|.+|....
T Consensus 237 gyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~k 316 (370)
T KOG1007|consen 237 GYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVK 316 (370)
T ss_pred ccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcc
Confidence 9999999999888999999999999999999954 7888999999999996431
Q ss_pred ---CeEEeEEeccccCceeEEEecCCCC-EEEEEeCCCcEEEEEcCC
Q 019405 290 ---GKLLGCFIGKCSGSIRSIARHPTLP-IIASCGLDSYLRFWDIKT 332 (341)
Q Consensus 290 ---~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~dg~v~iwd~~~ 332 (341)
...+.++..| ++.|++++|+.-.+ .+|+-|.||.+.|=.+..
T Consensus 317 pL~dg~l~tydeh-EDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 317 PLQDGQLETYDEH-EDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred ccccccccccccc-ccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 0123456666 89999999998777 678899999999877764
No 159
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=8.7e-20 Score=140.99 Aligned_cols=214 Identities=13% Similarity=0.097 Sum_probs=156.4
Q ss_pred CCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEE-
Q 019405 101 PEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLF- 179 (341)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~- 179 (341)
+|.+.++++++.+..+ .|++++.|+.|++|++...... +-..++. ++. -+.-+.+.|.||.+-++.
T Consensus 84 gH~~~vt~~~FsSdGK--------~lat~~~Dr~Ir~w~~~DF~~~---eHr~~R~-nve-~dhpT~V~FapDc~s~vv~ 150 (420)
T KOG2096|consen 84 GHKKEVTDVAFSSDGK--------KLATISGDRSIRLWDVRDFENK---EHRCIRQ-NVE-YDHPTRVVFAPDCKSVVVS 150 (420)
T ss_pred ccCCceeeeEEcCCCc--------eeEEEeCCceEEEEecchhhhh---hhhHhhc-ccc-CCCceEEEECCCcceEEEE
Confidence 4779999999988877 9999999999999998653321 0111111 111 124578899999876554
Q ss_pred eeCCCeEEEEECCCCc---eeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEe
Q 019405 180 GGKGVEVNVWDLDKCE---KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF 256 (341)
Q Consensus 180 ~~~d~~v~i~d~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 256 (341)
+-...++++|.+...+ ....+.......+...|...+..+-. ..++.+|++++.|..|.+|+++ ++. +..+..
T Consensus 151 ~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGi--A~~~k~imsas~dt~i~lw~lk-Gq~-L~~idt 226 (420)
T KOG2096|consen 151 VKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGI--AGNAKYIMSASLDTKICLWDLK-GQL-LQSIDT 226 (420)
T ss_pred EccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEee--cCCceEEEEecCCCcEEEEecC-Cce-eeeecc
Confidence 4456689999875422 21111111111122223444555666 6788999999999999999999 453 777777
Q ss_pred cCCCeEEEEEcCCCceEEEEeCCCCEEEEECC---CC-----eEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEE
Q 019405 257 RETPIKAVAEEPDSFNIYIGNGSGDLASVDIR---TG-----KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFW 328 (341)
Q Consensus 257 ~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~---~~-----~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iw 328 (341)
....-+..+.||+|+++++++..-.|++|.+- .| ..+..+++| .+.|..++|+++...+++.|.||++++|
T Consensus 227 nq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH-~saV~~~aFsn~S~r~vtvSkDG~wriw 305 (420)
T KOG2096|consen 227 NQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGH-QSAVLAAAFSNSSTRAVTVSKDGKWRIW 305 (420)
T ss_pred ccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccc-hhheeeeeeCCCcceeEEEecCCcEEEe
Confidence 76777788999999999999999999999863 22 346778898 9999999999999999999999999999
Q ss_pred EcCC
Q 019405 329 DIKT 332 (341)
Q Consensus 329 d~~~ 332 (341)
|++-
T Consensus 306 dtdV 309 (420)
T KOG2096|consen 306 DTDV 309 (420)
T ss_pred eccc
Confidence 9863
No 160
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=1.5e-20 Score=155.33 Aligned_cols=269 Identities=13% Similarity=0.150 Sum_probs=188.3
Q ss_pred cceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCC--------cchheeeccCCCCCCCCCCceeeEe
Q 019405 39 PKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG--------DLRVAISNAGDSGAQPEDDGIVGLH 110 (341)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (341)
|.+..++..|...+..++|-+... .|++++.||+|++|+++.. +++.++. +|.++|.|++
T Consensus 284 w~ik~tl~s~~d~ir~l~~~~sep----~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfr--------aH~gPVl~v~ 351 (577)
T KOG0642|consen 284 WNIKFTLRSHDDCIRALAFHPSEP----VLITASEDGTLKLWNLQKAKKSAEKDVEPILTFR--------AHEGPVLCVV 351 (577)
T ss_pred cceeeeeecchhhhhhhhcCCCCC----eEEEeccccchhhhhhcccCCccccceeeeEEEe--------cccCceEEEE
Confidence 334345556777777777665554 6999999999999999432 1223333 4779999999
Q ss_pred eeeccccccccccceeEEEcccceeEEEEeeecccccccCCc-eEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEE
Q 019405 111 LFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCS-TVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVW 189 (341)
Q Consensus 111 ~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~-~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~ 189 (341)
+-.... .+++|+.||+|+.|++.-+.+...+.+- .+.---..|...++.+++++....|++++.||++++|
T Consensus 352 v~~n~~--------~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w 423 (577)
T KOG0642|consen 352 VPSNGE--------HCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLW 423 (577)
T ss_pred ecCCce--------EEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEee
Confidence 887777 9999999999999987633222111111 1222223467789999999999999999999999999
Q ss_pred ECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEec-------CCCeE
Q 019405 190 DLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR-------ETPIK 262 (341)
Q Consensus 190 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-------~~~v~ 262 (341)
+.....+ ..+...... +...++.+. +..-...++...-+.--++++..... +..+... ...+.
T Consensus 424 ~~~~~~~-~~f~~~~e~-------g~Plsvd~~-ss~~a~~~~s~~~~~~~~~~~ev~s~-~~~~~s~~~~~~~~~~~in 493 (577)
T KOG0642|consen 424 EPTEESP-CTFGEPKEH-------GYPLSVDRT-SSRPAHSLASFRFGYTSIDDMEVVSD-LLIFESSASPGPRRYPQIN 493 (577)
T ss_pred ccCCcCc-cccCCcccc-------CCcceEeec-cchhHhhhhhcccccccchhhhhhhh-eeeccccCCCcccccCccc
Confidence 9876555 333333211 224455552 11112233333333333444443332 3333221 13467
Q ss_pred EEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeee
Q 019405 263 AVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSA 338 (341)
Q Consensus 263 ~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 338 (341)
.+.++|.+...+++..|+.|+++|..+++++.....| ...++++++.|+|.+|++++.|+.+++|.+....++..
T Consensus 494 ~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~-~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~e 568 (577)
T KOG0642|consen 494 KVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAH-KDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLE 568 (577)
T ss_pred eEEecCCCCeeEecccCCceecccccccccchheeec-cceecceeecCCCceEEeecCCceeehhhccchheeec
Confidence 7889999999999999999999999999999999998 89999999999999999999999999999987777654
No 161
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.85 E-value=2.7e-19 Score=142.36 Aligned_cols=295 Identities=12% Similarity=0.085 Sum_probs=205.4
Q ss_pred eeeeecCCCCeEEEEEecCccC----ccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcc----
Q 019405 16 RALTFDSLGLIKVIEARGEHGG----VPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL---- 87 (341)
Q Consensus 16 ~~~~~~~~g~i~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~---- 87 (341)
++.+++.|..|++|.+...+.+ .-+.+..+..|+.+|+++.|++++. +||+|+.+|.|.+|...+-..
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~ge----lLASg~D~g~v~lWk~~~~~~~~~d 103 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGE----LLASGGDGGEVFLWKQGDVRIFDAD 103 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcC----eeeecCCCceEEEEEecCcCCcccc
Confidence 7889999999999999887332 2223456788999999999998777 899999999999998762111
Q ss_pred --hheeeccCC--CCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCC
Q 019405 88 --RVAISNAGD--SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASG 163 (341)
Q Consensus 88 --~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~ 163 (341)
....+..+- .....|.+.+..++|.+.+. .+++++-|..+.+||+..+.. +...+ .|..
T Consensus 104 ~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--------~l~s~s~dns~~l~Dv~~G~l--------~~~~~-dh~~ 166 (434)
T KOG1009|consen 104 TEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--------FLVSGSVDNSVRLWDVHAGQL--------LAILD-DHEH 166 (434)
T ss_pred chhhhCccceEEEEEecccccchhhhhccCCCc--------eeeeeeccceEEEEEecccee--------Eeecc-cccc
Confidence 000000000 00013667888899988877 999999999999999976542 22222 4667
Q ss_pred ceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecC----------CCCCCccCccC----CeeeeEEEEEecCCCCE
Q 019405 164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAK----------PPPKNSLGIFT----PTWFTSAAFLSIDDHRK 229 (341)
Q Consensus 164 ~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~----------~~~~~~~~~~~----~~~v~~~~~~~~~~~~~ 229 (341)
.++.++|+|-++++++-+.|...+.+.+...+.+.... ......+.+.| +.....++| +|+|.+
T Consensus 167 yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsf--TPdG~l 244 (434)
T KOG1009|consen 167 YVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSF--TPDGSL 244 (434)
T ss_pred ccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhccc--CCCCcE
Confidence 88999999999999998888877777765433322221 01111112222 234567778 899999
Q ss_pred EEEEeC---------CCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCC------------------CceEEEEeCCCCE
Q 019405 230 FVAGTN---------DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPD------------------SFNIYIGNGSGDL 282 (341)
Q Consensus 230 l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~------------------~~~l~~g~~dg~i 282 (341)
+++... -++.++|+-...++|...+..-..+...+.|+|- +..++.+ ..+.|
T Consensus 245 lvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiA-t~~sv 323 (434)
T KOG1009|consen 245 LVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIA-TKNSV 323 (434)
T ss_pred EEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEe-ecceE
Confidence 887532 1334667666556677777666666666666551 1223444 45689
Q ss_pred EEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCc
Q 019405 283 ASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ 334 (341)
Q Consensus 283 ~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 334 (341)
++||.++.+++.....-|-..|+.++|+++|..|+..|.||...+--++..+
T Consensus 324 yvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 324 YVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred EEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchh
Confidence 9999999998888877668999999999999999999999988776666543
No 162
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=7.1e-21 Score=169.30 Aligned_cols=221 Identities=15% Similarity=0.213 Sum_probs=165.6
Q ss_pred CCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC-CEEEEee
Q 019405 103 DDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGG 181 (341)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~-~~l~~~~ 181 (341)
..++..++|-+...+ ..+.++.|.+||.|.+|+..... .......+...+ .|.+.|..++|++.. ++||+|+
T Consensus 64 ~~rF~kL~W~~~g~~----~~GlIaGG~edG~I~ly~p~~~~--~~~~~~~la~~~-~h~G~V~gLDfN~~q~nlLASGa 136 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSH----SHGLIAGGLEDGNIVLYDPASII--ANASEEVLATKS-KHTGPVLGLDFNPFQGNLLASGA 136 (1049)
T ss_pred cccceeeeecccCCC----ccceeeccccCCceEEecchhhc--cCcchHHHhhhc-ccCCceeeeeccccCCceeeccC
Confidence 466778888766553 22479999999999999976531 111222233333 477899999999965 5999999
Q ss_pred CCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCC--
Q 019405 182 KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRET-- 259 (341)
Q Consensus 182 ~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-- 259 (341)
.||.|.|||+.+.+.-..... ...+..|.+++|. ......|++++.+|.+.|||++..+ ++..+..+..
T Consensus 137 ~~geI~iWDlnn~~tP~~~~~-------~~~~~eI~~lsWN-rkvqhILAS~s~sg~~~iWDlr~~~-pii~ls~~~~~~ 207 (1049)
T KOG0307|consen 137 DDGEILIWDLNKPETPFTPGS-------QAPPSEIKCLSWN-RKVSHILASGSPSGRAVIWDLRKKK-PIIKLSDTPGRM 207 (1049)
T ss_pred CCCcEEEeccCCcCCCCCCCC-------CCCcccceEeccc-hhhhHHhhccCCCCCceeccccCCC-cccccccCCCcc
Confidence 999999999987544333321 1123569999994 3345678899999999999999854 5777766544
Q ss_pred CeEEEEEcCCC-ceEEEEeCCC---CEEEEECCCC-eEEeEEeccccCceeEEEecCCC-CEEEEEeCCCcEEEEEcCCC
Q 019405 260 PIKAVAEEPDS-FNIYIGNGSG---DLASVDIRTG-KLLGCFIGKCSGSIRSIARHPTL-PIIASCGLDSYLRFWDIKTR 333 (341)
Q Consensus 260 ~v~~~~~~~~~-~~l~~g~~dg---~i~iwd~~~~-~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~ 333 (341)
.+..++|+|+. ..|++++.|. .|.+||+|.- ..++.+.+| ...|.+|.|++.+ ++|++++.|+.|.+|+.++|
T Consensus 208 ~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H-~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg 286 (1049)
T KOG0307|consen 208 HCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGH-QRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG 286 (1049)
T ss_pred ceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhccc-ccceeeeccCCCCchhhhcccCCCCeeEecCCCc
Confidence 46789999987 5566666553 4999999854 467777787 8999999999977 78999999999999999999
Q ss_pred ceeeeec
Q 019405 334 QLLSAVC 340 (341)
Q Consensus 334 ~~~~~~~ 340 (341)
+.+.++-
T Consensus 287 Evl~~~p 293 (1049)
T KOG0307|consen 287 EVLGELP 293 (1049)
T ss_pred eEeeecC
Confidence 9988763
No 163
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.85 E-value=1.3e-18 Score=132.92 Aligned_cols=274 Identities=14% Similarity=0.114 Sum_probs=192.4
Q ss_pred CCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCC-ceEEEEccCCeEEEeeCCCC--cch--heeeccCCCC
Q 019405 24 GLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQND-PLLAVARKNGLTDILNPLNG--DLR--VAISNAGDSG 98 (341)
Q Consensus 24 g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~-~~l~~~~~dg~i~iw~~~~~--~~~--~~~~~~~~~~ 98 (341)
.+|.+..+.++ .+.......| +|.-+++-+.|.++....- ++||+.+ ..+|+|.+... +.. ..+..+.
T Consensus 73 Nkvqiv~ld~~-s~e~~~~a~f-d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~k--- 145 (364)
T KOG0290|consen 73 NKVQIVQLDED-SGELVEDANF-DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNK--- 145 (364)
T ss_pred CeeEEEEEccC-CCceeccCCC-CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCc---
Confidence 45566666644 3422222233 6888899999998875222 3455544 68999998742 221 1122221
Q ss_pred CCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC-CEE
Q 019405 99 AQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFS 177 (341)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~-~~l 177 (341)
.+....++++..|...+.+ ++.+.+-|-+-.||+++.+ ..+.++.--+.|.++|..++|...+ +.+
T Consensus 146 ns~~~aPlTSFDWne~dp~-------~igtSSiDTTCTiWdie~~------~~~~vkTQLIAHDKEV~DIaf~~~s~~~F 212 (364)
T KOG0290|consen 146 NSEFCAPLTSFDWNEVDPN-------LIGTSSIDTTCTIWDIETG------VSGTVKTQLIAHDKEVYDIAFLKGSRDVF 212 (364)
T ss_pred ccccCCcccccccccCCcc-------eeEeecccCeEEEEEEeec------cccceeeEEEecCcceeEEEeccCccceE
Confidence 2334578888888777664 8899999999999999864 2446777777899999999998854 678
Q ss_pred EEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeC-CCeEEEEEcCCCCceeEEEEe
Q 019405 178 LFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DHQVRLYDTSAQRRPVMSFDF 256 (341)
Q Consensus 178 ~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~ 256 (341)
|+.+.||.|++||++..+....+...... ..+...++|+ ..+.+++|+-.. ...|.|.|++....++..++.
T Consensus 213 ASvgaDGSvRmFDLR~leHSTIIYE~p~~------~~pLlRLswn-kqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~ 285 (364)
T KOG0290|consen 213 ASVGADGSVRMFDLRSLEHSTIIYEDPSP------STPLLRLSWN-KQDPNYMATFAMDSNKVVILDIRVPCTPVARLRN 285 (364)
T ss_pred EEecCCCcEEEEEecccccceEEecCCCC------CCcceeeccC-cCCchHHhhhhcCCceEEEEEecCCCcceehhhc
Confidence 99999999999999976544333322211 1446778885 456677777544 457999999998889999999
Q ss_pred cCCCeEEEEEcCCC-ceEEEEeCCCCEEEEECCCCe------EEeEEeccccCceeEEEecCCCC-EEEEEeCCCcEEE
Q 019405 257 RETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGK------LLGCFIGKCSGSIRSIARHPTLP-IIASCGLDSYLRF 327 (341)
Q Consensus 257 ~~~~v~~~~~~~~~-~~l~~g~~dg~i~iwd~~~~~------~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~dg~v~i 327 (341)
|.+.|+.++|.|.. ..|++++.|..+.|||+.+.- ++..+.. .+.|+.+.|++..+ .++.+. +..+.+
T Consensus 286 H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a--~~EVNqi~Ws~~~~Dwiai~~-~kklei 361 (364)
T KOG0290|consen 286 HQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTA--GGEVNQIQWSSSQPDWIAICF-GKKLEI 361 (364)
T ss_pred CcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhc--cceeeeeeecccCCCEEEEEe-cCeeeE
Confidence 99999999999955 789999999999999997531 2333332 67899999997554 666553 334433
No 164
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.84 E-value=2e-19 Score=150.85 Aligned_cols=252 Identities=10% Similarity=0.071 Sum_probs=175.2
Q ss_pred CceeeeecCCCCeEEEEEecCccCccceeee--ccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcc--h-
Q 019405 14 PLRALTFDSLGLIKVIEARGEHGGVPKVVER--WGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL--R- 88 (341)
Q Consensus 14 ~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--~- 88 (341)
.+++|+.+.|.+++.|++... ++... +-+|...+..++|.+.+.. .|++|+.||.|.|||..-... +
T Consensus 112 e~~lVsasGDsT~r~Wdvk~s-----~l~G~~~~~GH~~SvkS~cf~~~n~~---vF~tGgRDg~illWD~R~n~~d~~e 183 (720)
T KOG0321|consen 112 ESLLVSASGDSTIRPWDVKTS-----RLVGGRLNLGHTGSVKSECFMPTNPA---VFCTGGRDGEILLWDCRCNGVDALE 183 (720)
T ss_pred ceeEEEccCCceeeeeeeccc-----eeecceeecccccccchhhhccCCCc---ceeeccCCCcEEEEEEeccchhhHH
Confidence 477999999999999999987 34333 6689999999999988774 699999999999999864321 1
Q ss_pred ----heeeccCCC--CCC----------CCCCceee---EeeeeccccccccccceeEEEcc-cceeEEEEeeecccccc
Q 019405 89 ----VAISNAGDS--GAQ----------PEDDGIVG---LHLFKRQREESSSRSRTLLTCTT-KGKASMRSIEVTKVSAE 148 (341)
Q Consensus 89 ----~~~~~~~~~--~~~----------~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~-~g~~~i~~~~~~~~~~~ 148 (341)
..+..|... ..+ .+...+.+ ..+|.++. .|++++. |+.++|||+.....+..
T Consensus 184 ~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~--------tlaSaga~D~~iKVWDLRk~~~~~r 255 (720)
T KOG0321|consen 184 EFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDES--------TLASAGAADSTIKVWDLRKNYTAYR 255 (720)
T ss_pred HHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccc--------eeeeccCCCcceEEEeecccccccc
Confidence 111112110 000 12233333 55666655 7888877 99999999987654322
Q ss_pred cCCceEEEEEeec--CCceEEEEecCCCCEEEEeeCCCeEEEEECCCCc--eeeecCCCCCCccCccCCeeeeEEEEEec
Q 019405 149 SSCSTVKSWNVCA--SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE--KIWTAKPPPKNSLGIFTPTWFTSAAFLSI 224 (341)
Q Consensus 149 ~~~~~v~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 224 (341)
.+...+.-+.... .-.+.++..+..|.+|++.+.|+.|++||+.+.. ++..+..+.... -.+.+ .. +
T Consensus 256 ~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~s------f~vks-~l--S 326 (720)
T KOG0321|consen 256 QEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSS------FYVKS-EL--S 326 (720)
T ss_pred cCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccce------eeeee-ec--C
Confidence 1111222222111 2346778888888888888889999999997532 233333322111 11111 12 7
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCC-ceEEEEeCCCCEEEEECCCC
Q 019405 225 DDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTG 290 (341)
Q Consensus 225 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~iwd~~~~ 290 (341)
|++.++++|+.|...++|.+.+.+.+...+.+|...|++++|.|.. .-+++++.|..++||++.++
T Consensus 327 pd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 327 PDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred CCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 8999999999999999999999888888999999999999998844 45677799999999998654
No 165
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.1e-18 Score=134.73 Aligned_cols=250 Identities=13% Similarity=0.068 Sum_probs=176.0
Q ss_pred ceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcc
Q 019405 52 NCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT 131 (341)
Q Consensus 52 ~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (341)
-.++.|+.-+. +||+|+.||.|.|||+.+...-+.+.. |-.++.+++|.+.+. .|++++.
T Consensus 26 a~~~~Fs~~G~----~lAvGc~nG~vvI~D~~T~~iar~lsa--------H~~pi~sl~WS~dgr--------~LltsS~ 85 (405)
T KOG1273|consen 26 AECCQFSRWGD----YLAVGCANGRVVIYDFDTFRIARMLSA--------HVRPITSLCWSRDGR--------KLLTSSR 85 (405)
T ss_pred cceEEeccCcc----eeeeeccCCcEEEEEccccchhhhhhc--------cccceeEEEecCCCC--------EeeeecC
Confidence 45666666555 999999999999999999887777766 457888999887777 9999999
Q ss_pred cceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCC-EEEEeeCCCeEEEEECCCCceeeecCCCCCCccCc
Q 019405 132 KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK-FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGI 210 (341)
Q Consensus 132 ~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~ 210 (341)
|..+.+||+..+. .++ .+....+|+...|+|... .+++.-.+..-.+-++..+... .+.......+.
T Consensus 86 D~si~lwDl~~gs--------~l~--rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~Lp~d~d~dln- 153 (405)
T KOG1273|consen 86 DWSIKLWDLLKGS--------PLK--RIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-VLPKDDDGDLN- 153 (405)
T ss_pred CceeEEEeccCCC--------cee--EEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee-eccCCCccccc-
Confidence 9999999986543 222 334467999999998543 3333333333444455432221 12221111111
Q ss_pred cCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecC-CCeEEEEEcCCCceEEEEeCCCCEEEEECCC
Q 019405 211 FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE-TPIKAVAEEPDSFNIYIGNGSGDLASVDIRT 289 (341)
Q Consensus 211 ~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~ 289 (341)
....+..| .+.|+++++|...|.+.++|..+.+. +..++-.. ..|..+.++..|+.|+.-+.|..|+.|+++.
T Consensus 154 ---~sas~~~f--dr~g~yIitGtsKGkllv~~a~t~e~-vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~d 227 (405)
T KOG1273|consen 154 ---SSASHGVF--DRRGKYIITGTSKGKLLVYDAETLEC-VASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISD 227 (405)
T ss_pred ---cccccccc--cCCCCEEEEecCcceEEEEecchhee-eeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhh
Confidence 11223356 78999999999999999999998764 77776655 6899999999999999999999999999862
Q ss_pred C-------e--EEeEEecc-ccCceeEEEecCCCCEEEEEeC-CCcEEEEEcCCCceeeee
Q 019405 290 G-------K--LLGCFIGK-CSGSIRSIARHPTLPIIASCGL-DSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 290 ~-------~--~~~~~~~~-~~~~i~~~~~~~~~~~l~s~~~-dg~v~iwd~~~~~~~~~~ 339 (341)
- + +.++++.- +...=.+++|+.+|.+++.++. -..++||.-..|.+++.+
T Consensus 228 i~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKIL 288 (405)
T KOG1273|consen 228 IDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKIL 288 (405)
T ss_pred hcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeee
Confidence 1 1 11222110 1223356789999999887764 457999999999888765
No 166
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.84 E-value=7.5e-19 Score=136.08 Aligned_cols=277 Identities=15% Similarity=0.184 Sum_probs=193.6
Q ss_pred eeeeecCCCCeEEEEEecCc----cCcc---ceeeeccCCCCCceeEEEe-----ccCCCCCceEEEEccCCeEEEeeCC
Q 019405 16 RALTFDSLGLIKVIEARGEH----GGVP---KVVERWGDPHSSNCVLAAS-----IDDSQNDPLLAVARKNGLTDILNPL 83 (341)
Q Consensus 16 ~~~~~~~~g~i~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~s-----~~~~~~~~~l~~~~~dg~i~iw~~~ 83 (341)
.+++-++|..+++|++..+. .+.. +....++- ....++...+ ....|+..++++.+.+.-|++||.-
T Consensus 63 ciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~-~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaf 141 (406)
T KOG2919|consen 63 CILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRY-QEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAF 141 (406)
T ss_pred eEEeecccCeeeEEecChhhcccCCCCccccccceeEEe-ccCCEEEEEEeeeccccCCCccceeeeccccCceeeeecc
Confidence 36677788888999876541 0100 00011111 1122222222 2345677799999999999999999
Q ss_pred CCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEE----Ee
Q 019405 84 NGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSW----NV 159 (341)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~----~~ 159 (341)
+|+....+....... .-....++++.+... .|+ ++....|+++++..... +-.++.- ..
T Consensus 142 tG~lraSy~~ydh~d---e~taAhsL~Fs~DGe--------qlf-aGykrcirvFdt~RpGr-----~c~vy~t~~~~k~ 204 (406)
T KOG2919|consen 142 TGKLRASYRAYDHQD---EYTAAHSLQFSPDGE--------QLF-AGYKRCIRVFDTSRPGR-----DCPVYTTVTKGKF 204 (406)
T ss_pred ccccccchhhhhhHH---hhhhheeEEecCCCC--------eEe-ecccceEEEeeccCCCC-----CCcchhhhhcccc
Confidence 999988887642110 012233555544443 454 45578899999843221 1111110 11
Q ss_pred ecCCceEEEEecCCC-CEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeC-CC
Q 019405 160 CASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DH 237 (341)
Q Consensus 160 ~~~~~i~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-d~ 237 (341)
...+.|.|++++|.. +.++.|+....+-||.-..+.++..+.++. +.|+.+.| .++|+.|.+|.. |.
T Consensus 205 gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~---------gGvThL~~--~edGn~lfsGaRk~d 273 (406)
T KOG2919|consen 205 GQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHG---------GGVTHLQW--CEDGNKLFSGARKDD 273 (406)
T ss_pred cccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccC---------CCeeeEEe--ccCcCeecccccCCC
Confidence 123568899999955 589999999999999988888888877655 66999999 789999999875 67
Q ss_pred eEEEEEcCCCCceeEEEEecCC-CeEEE--EEcCCCceEEEEeCCCCEEEEECCC-CeEEeEEeccccCceeEEEecCCC
Q 019405 238 QVRLYDTSAQRRPVMSFDFRET-PIKAV--AEEPDSFNIYIGNGSGDLASVDIRT-GKLLGCFIGKCSGSIRSIARHPTL 313 (341)
Q Consensus 238 ~i~iwd~~~~~~~~~~~~~~~~-~v~~~--~~~~~~~~l~~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~i~~~~~~~~~ 313 (341)
.|-.||++....++..+..|.. .-..| ...|.+++|++|+.||.|++||+++ +..+..+..+ ...++.++++|--
T Consensus 274 kIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~-sd~vNgvslnP~m 352 (406)
T KOG2919|consen 274 KILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNY-SDTVNGVSLNPIM 352 (406)
T ss_pred eEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccc-cccccceecCccc
Confidence 8999999988777877777654 22233 4468999999999999999999998 7777778777 8999999999999
Q ss_pred CEEEEEeCC
Q 019405 314 PIIASCGLD 322 (341)
Q Consensus 314 ~~l~s~~~d 322 (341)
+++++++..
T Consensus 353 pilatssGq 361 (406)
T KOG2919|consen 353 PILATSSGQ 361 (406)
T ss_pred ceeeeccCc
Confidence 999988754
No 167
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.84 E-value=3e-18 Score=148.04 Aligned_cols=285 Identities=14% Similarity=0.092 Sum_probs=195.3
Q ss_pred CCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcc--hheeeccCCCCCCC
Q 019405 24 GLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL--RVAISNAGDSGAQP 101 (341)
Q Consensus 24 g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--~~~~~~~~~~~~~~ 101 (341)
+.+.+|++.+. ..++. .+ .-...+.++.|++... .+|+.|+.+|.|.+||+..+.. ...+..+ ...
T Consensus 222 ~~~~vW~~~~p--~~Pe~--~~-~~~s~v~~~~f~p~~p---~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~----~~s 289 (555)
T KOG1587|consen 222 GVLLVWSLKNP--NTPEL--VL-ESPSEVTCLKFCPFDP---NLLAGGCYNGQVVLWDLRKGSDTPPSGLSAL----EVS 289 (555)
T ss_pred ceEEEEecCCC--CCceE--EE-ecCCceeEEEeccCCc---ceEEeeccCceEEEEEccCCCCCCCcccccc----ccc
Confidence 46788888886 43344 33 3467889999998665 3688899999999999987655 2222211 124
Q ss_pred CCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEE---EEeecCCceEEEEecC-CCCEE
Q 019405 102 EDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKS---WNVCASGTIAFSKVDI-SEKFS 177 (341)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~---~~~~~~~~i~~~~~~~-~~~~l 177 (341)
|.++++.+.|.....+ ..+++++.||.+..|+++.-............. -+......+++++|.+ +...+
T Consensus 290 h~~~v~~vvW~~~~~~------~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~F 363 (555)
T KOG1587|consen 290 HSEPVTAVVWLQNEHN------TEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHF 363 (555)
T ss_pred CCcCeEEEEEeccCCC------CceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceE
Confidence 7788888888775441 269999999999999876543311000000011 0001124578888877 45778
Q ss_pred EEeeCCCeEEEEECCCCcee--eecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEE
Q 019405 178 LFGGKGVEVNVWDLDKCEKI--WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD 255 (341)
Q Consensus 178 ~~~~~d~~v~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 255 (341)
++|+.+|.|.--+-...+.. ..++.+ .....|.+.|+++.+ +|=+..+...+.|-+++||.......|+..+.
T Consensus 364 iVGTe~G~v~~~~r~g~~~~~~~~~~~~---~~~~~h~g~v~~v~~--nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~ 438 (555)
T KOG1587|consen 364 IVGTEEGKVYKGCRKGYTPAPEVSYKGH---STFITHIGPVYAVSR--NPFYPKNFLSVGDWTVRIWSEDVIASPLLSLD 438 (555)
T ss_pred EEEcCCcEEEEEeccCCccccccccccc---ccccccCcceEeeec--CCCccceeeeeccceeEeccccCCCCcchhhh
Confidence 89999999886332221111 111211 112235678999999 66555444444499999999885566788888
Q ss_pred ecCCCeEEEEEcCCC-ceEEEEeCCCCEEEEECCCC--eEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405 256 FRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTG--KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (341)
Q Consensus 256 ~~~~~v~~~~~~~~~-~~l~~g~~dg~i~iwd~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 332 (341)
.+...+++++|||.. ..++++..||.|.+||+... .++.+.+.+ ....+.+.|++.|+.|+.|...|.+++|++..
T Consensus 439 ~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~-~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 439 SSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVC-SPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred hccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccccc-ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 888889999999965 67788888999999999754 445555554 56778888999999999999999999999963
No 168
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=2.5e-18 Score=128.14 Aligned_cols=241 Identities=18% Similarity=0.120 Sum_probs=172.4
Q ss_pred EeccCCCCCceEEEEccCCeEEEeeCCCCcchheeec--cCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccce
Q 019405 57 ASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN--AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGK 134 (341)
Q Consensus 57 ~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 134 (341)
|+...+|.+++|++|..+|.|.+..+.+-..-..... ..-.++..|++++..+.+.+. .|++++ ||.
T Consensus 14 f~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~----------~Lls~g-dG~ 82 (325)
T KOG0649|consen 14 FAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD----------FLLSGG-DGL 82 (325)
T ss_pred HHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh----------heeecc-Cce
Confidence 4445566677999999999999998864211111111 011123468889988888632 666665 599
Q ss_pred eEEEEeeecccccccCCceEEEEEeecC--------CceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCC
Q 019405 135 ASMRSIEVTKVSAESSCSTVKSWNVCAS--------GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKN 206 (341)
Q Consensus 135 ~~i~~~~~~~~~~~~~~~~v~~~~~~~~--------~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~ 206 (341)
++-|..+..... .+.-++|+...+ ..|..+.+.|..+.++.++.|+.++.||+++|+..+.+++|.
T Consensus 83 V~gw~W~E~~es----~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHt-- 156 (325)
T KOG0649|consen 83 VYGWEWNEEEES----LATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHT-- 156 (325)
T ss_pred EEEeeehhhhhh----ccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCc--
Confidence 998887654321 223344544322 358899999988888888899999999999999999999975
Q ss_pred ccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEec----------CCCeEEEEEcCCCceEEEE
Q 019405 207 SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR----------ETPIKAVAEEPDSFNIYIG 276 (341)
Q Consensus 207 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~l~~g 276 (341)
.++.++.- ......+++|++||++|+||.++++. +..+... ...|-+++.+. .+|++|
T Consensus 157 -------DYvH~vv~--R~~~~qilsG~EDGtvRvWd~kt~k~-v~~ie~yk~~~~lRp~~g~wigala~~e--dWlvCG 224 (325)
T KOG0649|consen 157 -------DYVHSVVG--RNANGQILSGAEDGTVRVWDTKTQKH-VSMIEPYKNPNLLRPDWGKWIGALAVNE--DWLVCG 224 (325)
T ss_pred -------ceeeeeee--cccCcceeecCCCccEEEEeccccce-eEEeccccChhhcCcccCceeEEEeccC--ceEEec
Confidence 77999887 55667899999999999999999775 5555431 23456666544 488776
Q ss_pred eCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcC
Q 019405 277 NGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331 (341)
Q Consensus 277 ~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~ 331 (341)
+ ...+.+|+++..++...|.- .+++..+.|..+ .+++++..+.|.-|.+.
T Consensus 225 g-Gp~lslwhLrsse~t~vfpi--pa~v~~v~F~~d--~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 225 G-GPKLSLWHLRSSESTCVFPI--PARVHLVDFVDD--CVLIGGEGNHVQSYTLN 274 (325)
T ss_pred C-CCceeEEeccCCCceEEEec--ccceeEeeeecc--eEEEeccccceeeeeec
Confidence 5 56799999999998888875 467888888544 57777777777777664
No 169
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=1.2e-18 Score=154.03 Aligned_cols=250 Identities=19% Similarity=0.248 Sum_probs=182.2
Q ss_pred CCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeee
Q 019405 63 QNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEV 142 (341)
Q Consensus 63 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~ 142 (341)
|..+.++++...-+|+|||.+.++.+..+.... +....+..+.+.+..+.. .+++++.||.++||+--.
T Consensus 1074 pf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~-----~~~t~Vs~l~liNe~D~a------LlLtas~dGvIRIwk~y~ 1142 (1387)
T KOG1517|consen 1074 PFEPQIAAADDRERIRVWDWEKGRLLNGFDNGA-----FPDTRVSDLELINEQDDA------LLLTASSDGVIRIWKDYA 1142 (1387)
T ss_pred CCCceeEEcCCcceEEEEecccCceeccccCCC-----CCCCccceeeeecccchh------heeeeccCceEEEecccc
Confidence 444479999888899999999998877776643 334778889998877643 899999999999997422
Q ss_pred cccccccCCceEEEEEeecC------CceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeee
Q 019405 143 TKVSAESSCSTVKSWNVCAS------GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWF 216 (341)
Q Consensus 143 ~~~~~~~~~~~v~~~~~~~~------~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v 216 (341)
..- .....|..|..-.+ +.-.-++|.....+|+++|.-..|+|||.........+..... ..+
T Consensus 1143 ~~~---~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~--------t~v 1211 (1387)
T KOG1517|consen 1143 DKW---KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSS--------TLV 1211 (1387)
T ss_pred ccc---CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCC--------ccc
Confidence 210 11223444442211 1114456766666777777778999999998877777665432 346
Q ss_pred eEEEEEecCCCCEEEEEeCCCeEEEEEcCCCC--ceeEEEEecCCC--eEEEEEcCCC-ceEEEEeCCCCEEEEECCCCe
Q 019405 217 TSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR--RPVMSFDFRETP--IKAVAEEPDS-FNIYIGNGSGDLASVDIRTGK 291 (341)
Q Consensus 217 ~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~--v~~~~~~~~~-~~l~~g~~dg~i~iwd~~~~~ 291 (341)
+++.-. ...|+.+++|..||.|++||.+... .++...+.|+.. |..+.+.+.| ..|++|+.+|.|++||++...
T Consensus 1212 TaLS~~-~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~ 1290 (1387)
T KOG1517|consen 1212 TALSAD-LVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSS 1290 (1387)
T ss_pred eeeccc-ccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCc
Confidence 666553 3457999999999999999998643 357788888887 9999998877 359999999999999999742
Q ss_pred EE--eEEeccc--cCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceee
Q 019405 292 LL--GCFIGKC--SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLS 337 (341)
Q Consensus 292 ~~--~~~~~~~--~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 337 (341)
.. .....|. .+..+++..|+..+.+|+|+. +.|+||++. |+.+.
T Consensus 1291 ~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~ 1338 (1387)
T KOG1517|consen 1291 KETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLN 1338 (1387)
T ss_pred ccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhc
Confidence 21 1222221 235999999999999999998 999999987 44443
No 170
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.84 E-value=6.4e-19 Score=148.86 Aligned_cols=278 Identities=12% Similarity=0.112 Sum_probs=200.2
Q ss_pred ceeecCCCCCceeeeecCCCCe---------EEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCC
Q 019405 5 TTLECPGCPPLRALTFDSLGLI---------KVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNG 75 (341)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~g~i---------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg 75 (341)
.+.+-|+-..+.-+++-+||+. .+++..++ .+.+++++|...|++++++.++. ++|+|+.|.
T Consensus 5 ~~~r~~~~hci~d~afkPDGsqL~lAAg~rlliyD~ndG-----~llqtLKgHKDtVycVAys~dGk----rFASG~aDK 75 (1081)
T KOG1538|consen 5 LTWRDKAEHCINDIAFKPDGTQLILAAGSRLLVYDTSDG-----TLLQPLKGHKDTVYCVAYAKDGK----RFASGSADK 75 (1081)
T ss_pred hhhhcccccchheeEECCCCceEEEecCCEEEEEeCCCc-----ccccccccccceEEEEEEccCCc----eeccCCCce
Confidence 3344445455556677777765 34455544 56778999999999999999888 899999999
Q ss_pred eEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEE
Q 019405 76 LTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVK 155 (341)
Q Consensus 76 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~ 155 (341)
.|.||+.. ....++. .|.+.|.|+.+.+... .+++++- ....+|+.+.. .+.
T Consensus 76 ~VI~W~~k---lEG~LkY-------SH~D~IQCMsFNP~~h--------~LasCsL-sdFglWS~~qK---------~V~ 127 (1081)
T KOG1538|consen 76 SVIIWTSK---LEGILKY-------SHNDAIQCMSFNPITH--------QLASCSL-SDFGLWSPEQK---------SVS 127 (1081)
T ss_pred eEEEeccc---ccceeee-------ccCCeeeEeecCchHH--------Hhhhcch-hhccccChhhh---------hHH
Confidence 99999864 2233333 3568888888777665 6666653 34556765322 222
Q ss_pred EEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCC---CCEEEE
Q 019405 156 SWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD---HRKFVA 232 (341)
Q Consensus 156 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~l~~ 232 (341)
.+ .....+.+++|..||++++.|-.+|+|.+-+- ++++...+..+.+. ..+|.+++|+|+.. ...+++
T Consensus 128 K~--kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~------Nspiwsi~~~p~sg~G~~di~aV 198 (1081)
T KOG1538|consen 128 KH--KSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGS------NSPIWSICWNPSSGEGRNDILAV 198 (1081)
T ss_pred hh--hhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCC------CCCceEEEecCCCCCCccceEEE
Confidence 21 12356889999999999999999999999864 44444444443322 36699999954221 246777
Q ss_pred EeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCC
Q 019405 233 GTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPT 312 (341)
Q Consensus 233 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~ 312 (341)
.....++.+|.+.. +. +..-+.-+..-.|+.+.++|.+++.|+.|+.+.+|. +.|-.+.++... ..+|+.++..|+
T Consensus 199 ~DW~qTLSFy~LsG-~~-Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~-D~WIWtV~~~PN 274 (1081)
T KOG1538|consen 199 ADWGQTLSFYQLSG-KQ-IGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQ-DSWIWTVQAKPN 274 (1081)
T ss_pred EeccceeEEEEecc-ee-ecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeecccc-ceeEEEEEEccC
Confidence 77788888887774 22 222222233456889999999999999999999995 568788777665 889999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCC
Q 019405 313 LPIIASCGLDSYLRFWDIKT 332 (341)
Q Consensus 313 ~~~l~s~~~dg~v~iwd~~~ 332 (341)
++.++.|+.||+|..|++..
T Consensus 275 sQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 275 SQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred CceEEEEEccCeeehhhhHH
Confidence 99999999999999998753
No 171
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=1.4e-18 Score=153.60 Aligned_cols=283 Identities=17% Similarity=0.190 Sum_probs=182.8
Q ss_pred eeeecCCCCeEEEEEecCccCccceeeeccCCC---CCceeEEEeccCCCCCceEEEEccCCeEEEeeCC-CC-c---ch
Q 019405 17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPH---SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPL-NG-D---LR 88 (341)
Q Consensus 17 ~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~-~~-~---~~ 88 (341)
+++.++.-.|.+|+..+. +.+..|..+. ..|+.+.+- ...+..+|++|+.||.||||+-- +. + .+
T Consensus 1079 i~~ad~r~~i~vwd~e~~-----~~l~~F~n~~~~~t~Vs~l~li--Ne~D~aLlLtas~dGvIRIwk~y~~~~~~~eLV 1151 (1387)
T KOG1517|consen 1079 IAAADDRERIRVWDWEKG-----RLLNGFDNGAFPDTRVSDLELI--NEQDDALLLTASSDGVIRIWKDYADKWKKPELV 1151 (1387)
T ss_pred eEEcCCcceEEEEecccC-----ceeccccCCCCCCCccceeeee--cccchhheeeeccCceEEEecccccccCCceeE
Confidence 566666788999998887 5555554432 334433333 33334589999999999999643 22 2 22
Q ss_pred heeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEE
Q 019405 89 VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS 168 (341)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~ 168 (341)
..+....+.- +.......+.-|..... .|++++.-..++|||...... +.-........++++
T Consensus 1152 Taw~~Ls~~~--~~~r~~~~v~dWqQ~~G-------~Ll~tGd~r~IRIWDa~~E~~--------~~diP~~s~t~vTaL 1214 (1387)
T KOG1517|consen 1152 TAWSSLSDQL--PGARGTGLVVDWQQQSG-------HLLVTGDVRSIRIWDAHKEQV--------VADIPYGSSTLVTAL 1214 (1387)
T ss_pred EeeccccccC--ccCCCCCeeeehhhhCC-------eEEecCCeeEEEEEeccccee--------EeecccCCCccceee
Confidence 2222211111 11122223333433322 777777788899999765432 222222234456666
Q ss_pred EecC-CCCEEEEeeCCCeEEEEECCCCce---eeecCCCCCCccCccCCeeeeEEEEEecCCCC-EEEEEeCCCeEEEEE
Q 019405 169 KVDI-SEKFSLFGGKGVEVNVWDLDKCEK---IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQVRLYD 243 (341)
Q Consensus 169 ~~~~-~~~~l~~~~~d~~v~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~~i~iwd 243 (341)
.-+- .|+.+++|..||.|++||.+.... +...+.|.. ...|..+.+ .+.|- .|++|+.||.|++||
T Consensus 1215 S~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~-------~~~Iv~~sl--q~~G~~elvSgs~~G~I~~~D 1285 (1387)
T KOG1517|consen 1215 SADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHND-------VEPIVHLSL--QRQGLGELVSGSQDGDIQLLD 1285 (1387)
T ss_pred cccccCCceEEEeecCCceEEeecccCCccccceeecccCC-------cccceeEEe--ecCCCcceeeeccCCeEEEEe
Confidence 5543 479999999999999999875433 223333321 123888888 44333 599999999999999
Q ss_pred cCCC-CceeEEEEecC--C-CeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEe------ccccCceeEEEecCCC
Q 019405 244 TSAQ-RRPVMSFDFRE--T-PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI------GKCSGSIRSIARHPTL 313 (341)
Q Consensus 244 ~~~~-~~~~~~~~~~~--~-~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~------~~~~~~i~~~~~~~~~ 313 (341)
++.. +........|. + ..+++..+++...+|+|+. +.|+||++. |+.+..++ +...+.+.+++|||-.
T Consensus 1286 lR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~ 1363 (1387)
T KOG1517|consen 1286 LRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHR 1363 (1387)
T ss_pred cccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchh
Confidence 9973 22222333332 2 5899999999999999998 999999986 44444333 2234678999999999
Q ss_pred CEEEEEeCCCcEEEEEcCCCc
Q 019405 314 PIIASCGLDSYLRFWDIKTRQ 334 (341)
Q Consensus 314 ~~l~s~~~dg~v~iwd~~~~~ 334 (341)
-++|.|+.|..|.||.....+
T Consensus 1364 ~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1364 LLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred HhhhhccCCceEEEeecCCcC
Confidence 999999999999999887654
No 172
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.82 E-value=2.2e-16 Score=132.92 Aligned_cols=279 Identities=11% Similarity=0.098 Sum_probs=169.7
Q ss_pred eeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEE-ccCCeEEEeeCCC-CcchheeeccC
Q 019405 18 LTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVA-RKNGLTDILNPLN-GDLRVAISNAG 95 (341)
Q Consensus 18 ~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~-~~dg~i~iw~~~~-~~~~~~~~~~~ 95 (341)
++...++.|.+|++... |..+++.++.. ......++++++.+ +|+++ ..++.|.+|++.. ++. ......
T Consensus 6 ~~~~~~~~I~~~~~~~~--g~l~~~~~~~~-~~~~~~l~~spd~~----~lyv~~~~~~~i~~~~~~~~g~l-~~~~~~- 76 (330)
T PRK11028 6 IASPESQQIHVWNLNHE--GALTLLQVVDV-PGQVQPMVISPDKR----HLYVGVRPEFRVLSYRIADDGAL-TFAAES- 76 (330)
T ss_pred EEcCCCCCEEEEEECCC--CceeeeeEEec-CCCCccEEECCCCC----EEEEEECCCCcEEEEEECCCCce-EEeeee-
Confidence 44467899999999643 54455556633 34455677776655 77665 4588899999863 332 222211
Q ss_pred CCCCCCCCCceeeEeeeeccccccccccceeEEE-cccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC
Q 019405 96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC-TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (341)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~ 174 (341)
+..+....+.+.+..+ .++++ ..++.+.+|+++..... ...+.. .........++++|++
T Consensus 77 -----~~~~~p~~i~~~~~g~--------~l~v~~~~~~~v~v~~~~~~g~~----~~~~~~--~~~~~~~~~~~~~p~g 137 (330)
T PRK11028 77 -----PLPGSPTHISTDHQGR--------FLFSASYNANCVSVSPLDKDGIP----VAPIQI--IEGLEGCHSANIDPDN 137 (330)
T ss_pred -----cCCCCceEEEECCCCC--------EEEEEEcCCCeEEEEEECCCCCC----CCceee--ccCCCcccEeEeCCCC
Confidence 0112334455444443 45544 45889999998532110 011111 1222346678899999
Q ss_pred CEEEEe-eCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeC-CCeEEEEEcCCC--C-c
Q 019405 175 KFSLFG-GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DHQVRLYDTSAQ--R-R 249 (341)
Q Consensus 175 ~~l~~~-~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~--~-~ 249 (341)
++++++ ..++.|.+||+.+...+......... .........++| +|++++++++.. +++|.+|++... + .
T Consensus 138 ~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~---~~~g~~p~~~~~--~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~ 212 (330)
T PRK11028 138 RTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVT---TVEGAGPRHMVF--HPNQQYAYCVNELNSSVDVWQLKDPHGEIE 212 (330)
T ss_pred CEEEEeeCCCCEEEEEEECCCCcccccCCCcee---cCCCCCCceEEE--CCCCCEEEEEecCCCEEEEEEEeCCCCCEE
Confidence 988654 45689999999763322110000000 000122567889 899999988776 899999999742 2 1
Q ss_pred eeEEEEec------CCCeEEEEEcCCCceEEEEeC-CCCEEEEECCCCe----EEeEEeccccCceeEEEecCCCCEEEE
Q 019405 250 PVMSFDFR------ETPIKAVAEEPDSFNIYIGNG-SGDLASVDIRTGK----LLGCFIGKCSGSIRSIARHPTLPIIAS 318 (341)
Q Consensus 250 ~~~~~~~~------~~~v~~~~~~~~~~~l~~g~~-dg~i~iwd~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~s 318 (341)
.+..+... ......+.++|++++++++.. ++.|.+|++.... .+..... ......+.++|+|++|++
T Consensus 213 ~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~--~~~p~~~~~~~dg~~l~v 290 (330)
T PRK11028 213 CVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT--ETQPRGFNIDHSGKYLIA 290 (330)
T ss_pred EEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec--cccCCceEECCCCCEEEE
Confidence 23333221 112335889999999999864 6889999986432 2232222 224568999999999887
Q ss_pred EeC-CCcEEEEEcC
Q 019405 319 CGL-DSYLRFWDIK 331 (341)
Q Consensus 319 ~~~-dg~v~iwd~~ 331 (341)
++. +++|.+|+++
T Consensus 291 a~~~~~~v~v~~~~ 304 (330)
T PRK11028 291 AGQKSHHISVYEID 304 (330)
T ss_pred EEccCCcEEEEEEc
Confidence 775 8899999874
No 173
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=5.8e-19 Score=141.28 Aligned_cols=189 Identities=18% Similarity=0.141 Sum_probs=137.0
Q ss_pred eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCC
Q 019405 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP 204 (341)
Q Consensus 125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~ 204 (341)
.+.+++.||.++||+.... ........|.+.|.++.|+||+++|++.+.| ..+||+.+++..+.......
T Consensus 158 ~latgg~dg~lRv~~~Ps~---------~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~ 227 (398)
T KOG0771|consen 158 KLATGGTDGTLRVWEWPSM---------LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFS 227 (398)
T ss_pred EeeeccccceEEEEecCcc---------hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcc
Confidence 6666666666666664221 1122334577899999999999999999999 89999999996665554322
Q ss_pred CCccCccCCeeeeEEEEEecCCC---C--EEEEEeCCCeEEEEEcCCCCc----eeEEEEecCCCeEEEEEcCCCceEEE
Q 019405 205 KNSLGIFTPTWFTSAAFLSIDDH---R--KFVAGTNDHQVRLYDTSAQRR----PVMSFDFRETPIKAVAEEPDSFNIYI 275 (341)
Q Consensus 205 ~~~~~~~~~~~v~~~~~~~~~~~---~--~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~ 275 (341)
++ .....+.| ..++ . .++....-+.|+.||+..... +..+.......|++++.+++|++++.
T Consensus 228 k~-------~~~~~cRF--~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~Al 298 (398)
T KOG0771|consen 228 KD-------EMFSSCRF--SVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLAL 298 (398)
T ss_pred cc-------hhhhhcee--cccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEE
Confidence 21 23556667 4444 2 223333445677766654322 12222223458999999999999999
Q ss_pred EeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405 276 GNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (341)
Q Consensus 276 g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 332 (341)
|+.||.|-|++..+.+.++-.+..|...|+.+.|+|+.+++++.+.|....+..+.-
T Consensus 299 GT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 299 GTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred eccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999999999999988877765699999999999999999999999988887653
No 174
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=2.9e-19 Score=147.82 Aligned_cols=256 Identities=10% Similarity=0.050 Sum_probs=176.0
Q ss_pred eeeeecCCCCeEEEEEe---cCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheee
Q 019405 16 RALTFDSLGLIKVIEAR---GEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS 92 (341)
Q Consensus 16 ~~~~~~~~g~i~~~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 92 (341)
.++++++||.+++|++. .......+.+.+|.+|.++|.|++++.... .+.+|+.||+|+.|++.... ..+.
T Consensus 308 ~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~----~~ysgg~Dg~I~~w~~p~n~--dp~d 381 (577)
T KOG0642|consen 308 VLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE----HCYSGGIDGTIRCWNLPPNQ--DPDD 381 (577)
T ss_pred eEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce----EEEeeccCceeeeeccCCCC--Cccc
Confidence 48999999999999993 333466678889999999999999988777 89999999999999765211 1111
Q ss_pred ccC----CCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeec-CCceEE
Q 019405 93 NAG----DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA-SGTIAF 167 (341)
Q Consensus 93 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~-~~~i~~ 167 (341)
.+. .....+|.+.+..+.+..... .|++++.||+++.|....... +.|.... .+.-.+
T Consensus 382 s~dp~vl~~~l~Ghtdavw~l~~s~~~~--------~Llscs~DgTvr~w~~~~~~~---------~~f~~~~e~g~Pls 444 (577)
T KOG0642|consen 382 SYDPSVLSGTLLGHTDAVWLLALSSTKD--------RLLSCSSDGTVRLWEPTEESP---------CTFGEPKEHGYPLS 444 (577)
T ss_pred ccCcchhccceeccccceeeeeeccccc--------ceeeecCCceEEeeccCCcCc---------cccCCccccCCcce
Confidence 111 111234667777777777666 899999999999998754332 2222211 122233
Q ss_pred EEecCCC-CEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCC
Q 019405 168 SKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA 246 (341)
Q Consensus 168 ~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 246 (341)
+++-... ...++...-+.--+++++....+..+........ .....+.-+.+ .|...+.+++..|+.|+++|..+
T Consensus 445 vd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~--~~~~~in~vVs--~~~~~~~~~~hed~~Ir~~dn~~ 520 (577)
T KOG0642|consen 445 VDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGP--RRYPQINKVVS--HPTADITFTAHEDRSIRFFDNKT 520 (577)
T ss_pred EeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcc--cccCccceEEe--cCCCCeeEecccCCceecccccc
Confidence 3332211 2222222233333445555544444433221100 01133666677 67889999999999999999998
Q ss_pred CCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEecc
Q 019405 247 QRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK 299 (341)
Q Consensus 247 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 299 (341)
++ +++....|...++++++.|+|.+|++++.|+.+++|.+....++.....|
T Consensus 521 ~~-~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 521 GK-ILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred cc-cchheeeccceecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 76 48888899999999999999999999999999999999877777666554
No 175
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.82 E-value=7.2e-17 Score=127.34 Aligned_cols=163 Identities=17% Similarity=0.239 Sum_probs=130.7
Q ss_pred eecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEE--eCC
Q 019405 159 VCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG--TND 236 (341)
Q Consensus 159 ~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~--~~d 236 (341)
..-..+|.++.++. +.|+++-.+ .|+|||+++.+.+..+.....+ +..+.++.+ ++.+.+++-- ...
T Consensus 84 ~~fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n------~~gl~AlS~--n~~n~ylAyp~s~t~ 152 (391)
T KOG2110|consen 84 IFFPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPN------PKGLCALSP--NNANCYLAYPGSTTS 152 (391)
T ss_pred EecCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCC------ccceEeecc--CCCCceEEecCCCCC
Confidence 33456788888864 566666665 5999999999999888765322 233444444 6666677753 346
Q ss_pred CeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCC-EEEEECCCCeEEeEEecc-ccCceeEEEecCCCC
Q 019405 237 HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGD-LASVDIRTGKLLGCFIGK-CSGSIRSIARHPTLP 314 (341)
Q Consensus 237 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~-i~iwd~~~~~~~~~~~~~-~~~~i~~~~~~~~~~ 314 (341)
|.|.+||..+-+ ++..+..|++++-+++|+++|.+||+++..|+ ||+|++.+|+.+++|+-. ....|++++|+|+++
T Consensus 153 GdV~l~d~~nl~-~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~ 231 (391)
T KOG2110|consen 153 GDVVLFDTINLQ-PVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQ 231 (391)
T ss_pred ceEEEEEcccce-eeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCC
Confidence 899999999855 58999999999999999999999999999887 899999999999999742 235799999999999
Q ss_pred EEEEEeCCCcEEEEEcCCC
Q 019405 315 IIASCGLDSYLRFWDIKTR 333 (341)
Q Consensus 315 ~l~s~~~dg~v~iwd~~~~ 333 (341)
+|++.|..++|++|.+...
T Consensus 232 ~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 232 FLAASSNTETVHIFKLEKV 250 (391)
T ss_pred eEEEecCCCeEEEEEeccc
Confidence 9999999999999998754
No 176
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.81 E-value=1.9e-18 Score=131.93 Aligned_cols=192 Identities=17% Similarity=0.172 Sum_probs=143.3
Q ss_pred eeEEEEeeeccccc-ccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCce-eeecCCCCCCccCcc
Q 019405 134 KASMRSIEVTKVSA-ESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK-IWTAKPPPKNSLGIF 211 (341)
Q Consensus 134 ~~~i~~~~~~~~~~-~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~-~~~~~~~~~~~~~~~ 211 (341)
...||.+......+ ...-..+...+...-+.|.|+.|.|++..+++-. |+.|.+|++..+.. ...+.......
T Consensus 94 ~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e---- 168 (370)
T KOG1007|consen 94 GAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAE---- 168 (370)
T ss_pred eEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeeccccccc----
Confidence 46788876543321 1112234444444456899999999999988765 77899999987665 34333322111
Q ss_pred CCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCC-ceEEEEeCCCCEEEEECCCC
Q 019405 212 TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTG 290 (341)
Q Consensus 212 ~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~iwd~~~~ 290 (341)
+....++-+|.|+.+++.+++. .|+++..||+++.++....-..|...|..+.|+|+- .+|++++.||.|+|||.+.-
T Consensus 169 ~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t 247 (370)
T KOG1007|consen 169 MRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT 247 (370)
T ss_pred ccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC
Confidence 2344777789655688888876 588999999999776455556688899999999987 46788999999999999854
Q ss_pred -eEEeEEeccccCceeEEEecCCC-CEEEEEeCCCcEEEEEcCC
Q 019405 291 -KLLGCFIGKCSGSIRSIARHPTL-PIIASCGLDSYLRFWDIKT 332 (341)
Q Consensus 291 -~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~dg~v~iwd~~~ 332 (341)
.++.++.+| ...|+++.|+|.- +++++++.|..|.+|...+
T Consensus 248 k~pv~el~~H-sHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 248 KFPVQELPGH-SHWVWAVRFNPEHDQLILSGGSDSAVNLSCASS 290 (370)
T ss_pred CccccccCCC-ceEEEEEEecCccceEEEecCCCceeEEEeccc
Confidence 578889998 9999999999965 5889999999999998654
No 177
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.80 E-value=1.1e-17 Score=127.83 Aligned_cols=260 Identities=15% Similarity=0.129 Sum_probs=172.7
Q ss_pred CCceeEEEeccCCCCCceEEEEcc----CCeEEEeeCCC--CcchheeeccCCCCCCCCCCceeeEeeeecccccccccc
Q 019405 50 SSNCVLAASIDDSQNDPLLAVARK----NGLTDILNPLN--GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS 123 (341)
Q Consensus 50 ~~~~~~~~s~~~~~~~~~l~~~~~----dg~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (341)
-..+.+.||.. ...+.+||.|+. .++|.|-.+.. ++.+..-. -.+.-+++.+.|.+.... ...
T Consensus 45 ~~lya~~Ws~~-~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~-------fd~~YP~tK~~wiPd~~g---~~p 113 (364)
T KOG0290|consen 45 WPLYAMNWSVR-PDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDAN-------FDHPYPVTKLMWIPDSKG---VYP 113 (364)
T ss_pred CceeeeccccC-CCcceeEEEeeeccccCCeeEEEEEccCCCceeccCC-------CCCCCCccceEecCCccc---cCc
Confidence 44556666644 222346888874 46777776542 22222211 135567778888877642 121
Q ss_pred ceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecC-CCCEEEEeeCCCeEEEEECCCCce---eee
Q 019405 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEK---IWT 199 (341)
Q Consensus 124 ~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~---~~~ 199 (341)
..|+ +.+..+++|.+.........+.-...--+.....+++++.|+. +.++|.+++-|-+..|||++++.. ...
T Consensus 114 dlLA--Ts~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQ 191 (364)
T KOG0290|consen 114 DLLA--TSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQ 191 (364)
T ss_pred chhh--cccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeE
Confidence 1333 3355899999875321100000000001223456899999986 678999999999999999998622 223
Q ss_pred cCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEec--CCCeEEEEEcCCC-ceEEEE
Q 019405 200 AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR--ETPIKAVAEEPDS-FNIYIG 276 (341)
Q Consensus 200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~-~~l~~g 276 (341)
+.. |...|..++|. ...-+.+++.+.||.+|+||++..+.....+... ..+...++|++.. +++|+-
T Consensus 192 LIA---------HDKEV~DIaf~-~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf 261 (364)
T KOG0290|consen 192 LIA---------HDKEVYDIAFL-KGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATF 261 (364)
T ss_pred EEe---------cCcceeEEEec-cCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhh
Confidence 333 44669999994 2334689999999999999999865433333332 4578889998855 677765
Q ss_pred eCC-CCEEEEECCCC-eEEeEEeccccCceeEEEecCCC-CEEEEEeCCCcEEEEEcCCC
Q 019405 277 NGS-GDLASVDIRTG-KLLGCFIGKCSGSIRSIARHPTL-PIIASCGLDSYLRFWDIKTR 333 (341)
Q Consensus 277 ~~d-g~i~iwd~~~~-~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~ 333 (341)
..| ..|.|.|++.. .++..+++| .+.|+.++|.|.. ..|++++.|..+.+||+.+.
T Consensus 262 ~~dS~~V~iLDiR~P~tpva~L~~H-~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 262 AMDSNKVVILDIRVPCTPVARLRNH-QASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred hcCCceEEEEEecCCCcceehhhcC-cccccceEecCCCCceeeecCCcceEEEEecccc
Confidence 544 66999999864 578889998 9999999999965 58999999999999999753
No 178
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.79 E-value=2.2e-15 Score=131.38 Aligned_cols=274 Identities=20% Similarity=0.317 Sum_probs=194.3
Q ss_pred eeeeecCCCCeEEEEEecCccCccceeeeccCCCC-CceeEEEeccCCCCCc-eEEEE-ccCCeEEEeeCCC-Ccchhee
Q 019405 16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHS-SNCVLAASIDDSQNDP-LLAVA-RKNGLTDILNPLN-GDLRVAI 91 (341)
Q Consensus 16 ~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~-~l~~~-~~dg~i~iw~~~~-~~~~~~~ 91 (341)
.++.++.++.+.+|+..... .....+..... .+..+.+. .+++. +++.. ..|+.+++|+... ......+
T Consensus 79 ~~~~~~~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 151 (466)
T COG2319 79 LLLSGSSDGTIKLWDLDNGE----KLIKSLEGLHDSSVSKLALS---SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTL 151 (466)
T ss_pred EEEEecCCCcEEEEEcCCCc----eeEEEEeccCCCceeeEEEE---CCCcceEEeccCCCCccEEEEEecCCCeEEEEE
Confidence 35556679999999988862 13334444222 44444442 22333 44443 4499999999987 5555555
Q ss_pred eccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcc-cceeEEEEeeecccccccCCceEEEEEeecCCceEEEEe
Q 019405 92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT-KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV 170 (341)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~ 170 (341)
.. +...+..+.+.+... .++.++. ++.+.+|++.... .+..... +...+.++++
T Consensus 152 ~~--------~~~~v~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~-~~~~v~~~~~ 206 (466)
T COG2319 152 EG--------HSESVTSLAFSPDGK--------LLASGSSLDGTIKLWDLRTGK--------PLSTLAG-HTDPVSSLAF 206 (466)
T ss_pred ec--------CcccEEEEEECCCCC--------EEEecCCCCCceEEEEcCCCc--------eEEeecc-CCCceEEEEE
Confidence 55 345566666666554 6777775 9999999986522 3333332 6788999999
Q ss_pred cCCCC-EEEEeeCCCeEEEEECCCCceee-ecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCC
Q 019405 171 DISEK-FSLFGGKGVEVNVWDLDKCEKIW-TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR 248 (341)
Q Consensus 171 ~~~~~-~l~~~~~d~~v~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 248 (341)
+|++. .+++++.|+.|++||...+.... .+..+.. .. ...| ++++.++++++.|+.+++|+.....
T Consensus 207 ~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~---------~~-~~~~--~~~~~~~~~~~~d~~~~~~~~~~~~ 274 (466)
T COG2319 207 SPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSD---------SV-VSSF--SPDGSLLASGSSDGTIRLWDLRSSS 274 (466)
T ss_pred cCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCc---------ce-eEeE--CCCCCEEEEecCCCcEEEeeecCCC
Confidence 99998 55555999999999988777766 4555432 12 1267 7788888999999999999999755
Q ss_pred ceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEe--ccccCceeEEEecCCCCEEEEE-eCCCcE
Q 019405 249 RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI--GKCSGSIRSIARHPTLPIIASC-GLDSYL 325 (341)
Q Consensus 249 ~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~s~-~~dg~v 325 (341)
..+..+..|...+.++.|+|++..+++++.|+.+.+||..+........ .| ...+..+.|.+++..++.+ ..|+.+
T Consensus 275 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~ 353 (466)
T COG2319 275 SLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGH-EGPVSSLSFSPDGSLLVSGGSDDGTI 353 (466)
T ss_pred cEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeeccc-CCceEEEEECCCCCEEEEeecCCCcE
Confidence 4344446788899999999988888889889889999999887766665 66 6679999994332455555 688999
Q ss_pred EEEEcCCCc
Q 019405 326 RFWDIKTRQ 334 (341)
Q Consensus 326 ~iwd~~~~~ 334 (341)
.+|++....
T Consensus 354 ~~~~~~~~~ 362 (466)
T COG2319 354 RLWDLRTGK 362 (466)
T ss_pred EeeecCCCc
Confidence 999998776
No 179
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.79 E-value=1.8e-18 Score=134.22 Aligned_cols=248 Identities=13% Similarity=0.129 Sum_probs=175.5
Q ss_pred eeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCC
Q 019405 17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGD 96 (341)
Q Consensus 17 ~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 96 (341)
+++++..|.|++++.... ++...+.+|..+++.+.|.++.. +++++++.|..||+|++++..++..+-+.
T Consensus 108 la~~G~~GvIrVid~~~~-----~~~~~~~ghG~sINeik~~p~~~---qlvls~SkD~svRlwnI~~~~Cv~VfGG~-- 177 (385)
T KOG1034|consen 108 LAAGGYLGVIRVIDVVSG-----QCSKNYRGHGGSINEIKFHPDRP---QLVLSASKDHSVRLWNIQTDVCVAVFGGV-- 177 (385)
T ss_pred EEeecceeEEEEEecchh-----hhccceeccCccchhhhcCCCCC---cEEEEecCCceEEEEeccCCeEEEEeccc--
Confidence 444558899999999887 67778899999999999988776 48999999999999999999999988774
Q ss_pred CCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccc-------cccCCceE--------EEEE---
Q 019405 97 SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS-------AESSCSTV--------KSWN--- 158 (341)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~-------~~~~~~~v--------~~~~--- 158 (341)
.+|.+.+.++.+..... ++++++.|+++++|++...... .-..+++. .+.+
T Consensus 178 ---egHrdeVLSvD~~~~gd--------~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst 246 (385)
T KOG1034|consen 178 ---EGHRDEVLSVDFSLDGD--------RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFST 246 (385)
T ss_pred ---ccccCcEEEEEEcCCCC--------eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccc
Confidence 25779999999877776 9999999999999999733210 00111111 1111
Q ss_pred -eecCCceEEEEecCCCCEEEEeeCCCeEEEEECCC-CceeeecCCCCCCc-----cCccCCeeeeEEEEEecCCCCEEE
Q 019405 159 -VCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDK-CEKIWTAKPPPKNS-----LGIFTPTWFTSAAFLSIDDHRKFV 231 (341)
Q Consensus 159 -~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~-~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~l~ 231 (341)
-.|...|.|+.|- |+++++=+-++.|..|...+ .+.+.....+.... +.. ....+.-+.|..++-.+.|+
T Consensus 247 ~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~-~~c~iWfirf~~d~~~~~la 323 (385)
T KOG1034|consen 247 TDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDY-PMCDIWFIRFAFDPWQKMLA 323 (385)
T ss_pred cccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEecc-CccceEEEEEeecHHHHHHh
Confidence 1133455566664 57899888899999998732 22222222211110 000 01224455554378889999
Q ss_pred EEeCCCeEEEEEcCCCCcee-EEEEe--cCCCeEEEEEcCCCceEEEEeCCCCEEEEECC
Q 019405 232 AGTNDHQVRLYDTSAQRRPV-MSFDF--RETPIKAVAEEPDSFNIYIGNGSGDLASVDIR 288 (341)
Q Consensus 232 ~~~~d~~i~iwd~~~~~~~~-~~~~~--~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~ 288 (341)
.|...|.|.+||++....+. .++.. ....|...+|+.++..|+..+.|+.|.-||..
T Consensus 324 ~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 324 LGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred hccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 99999999999999755322 22221 23568899999999999999999999999864
No 180
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.79 E-value=7.8e-17 Score=128.15 Aligned_cols=213 Identities=15% Similarity=0.102 Sum_probs=158.7
Q ss_pred eccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccccccc
Q 019405 44 RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS 123 (341)
Q Consensus 44 ~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (341)
.+.+|.+++.-++|++.... .||+|+.|.+|.||++..+.....+. .+++.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~---vIASgSeD~~v~vW~IPe~~l~~~lt-----------epvv~L-------------- 127 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDC---VIASGSEDTKVMVWQIPENGLTRDLT-----------EPVVEL-------------- 127 (472)
T ss_pred CccCccccccccccCccCCc---eeecCCCCceEEEEECCCcccccCcc-----------cceEEE--------------
Confidence 46689999999999986653 59999999999999987654433222 111111
Q ss_pred ceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCC-CCEEEEeeCCCeEEEEECCCCceeeecCC
Q 019405 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDKCEKIWTAKP 202 (341)
Q Consensus 124 ~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~v~i~d~~~~~~~~~~~~ 202 (341)
..|...|-.++|+|. .+.|++++.|++|.+||+.+++.+..+.
T Consensus 128 -----------------------------------~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~- 171 (472)
T KOG0303|consen 128 -----------------------------------YGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD- 171 (472)
T ss_pred -----------------------------------eecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-
Confidence 134566778888885 4788999999999999999999887766
Q ss_pred CCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCC-eEEEEEcCCCceEEEEe---C
Q 019405 203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETP-IKAVAEEPDSFNIYIGN---G 278 (341)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~g~---~ 278 (341)
|+.-|.++.| +.+|.+|++.+.|..|||||.++++. +..-.+|.+. -..+.|-.++..+-+|. .
T Consensus 172 ---------hpd~i~S~sf--n~dGs~l~TtckDKkvRv~dpr~~~~-v~e~~~heG~k~~Raifl~~g~i~tTGfsr~s 239 (472)
T KOG0303|consen 172 ---------HPDMVYSMSF--NRDGSLLCTTCKDKKVRVIDPRRGTV-VSEGVAHEGAKPARAIFLASGKIFTTGFSRMS 239 (472)
T ss_pred ---------CCCeEEEEEe--ccCCceeeeecccceeEEEcCCCCcE-eeecccccCCCcceeEEeccCceeeecccccc
Confidence 3466999999 89999999999999999999999774 6666667543 34466777887555554 3
Q ss_pred CCCEEEEECCCCeE---EeEEeccccCceeEEEecCCCCEEEE-EeCCCcEEEEEcCCCc
Q 019405 279 SGDLASVDIRTGKL---LGCFIGKCSGSIRSIARHPTLPIIAS-CGLDSYLRFWDIKTRQ 334 (341)
Q Consensus 279 dg~i~iwd~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~s-~~~dg~v~iwd~~~~~ 334 (341)
+..+-+||..+.+. ..++.. ++.|.---|.++...+.. |-.|+.||.|.+.+-.
T Consensus 240 eRq~aLwdp~nl~eP~~~~elDt--SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 240 ERQIALWDPNNLEEPIALQELDT--SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred ccceeccCcccccCcceeEEecc--CCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 67799999876532 344443 456777778888886654 4579999999997654
No 181
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.79 E-value=1.3e-17 Score=137.56 Aligned_cols=207 Identities=16% Similarity=0.143 Sum_probs=157.1
Q ss_pred eEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccc
Q 019405 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS 146 (341)
Q Consensus 67 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~ 146 (341)
-|+.++.||++.|.+- .++..+.+..| .+.+.+-.|.+... -|+++++||.+++|+
T Consensus 77 ~~~i~s~DGkf~il~k-~~rVE~sv~AH--------~~A~~~gRW~~dGt--------gLlt~GEDG~iKiWS------- 132 (737)
T KOG1524|consen 77 TLLICSNDGRFVILNK-SARVERSISAH--------AAAISSGRWSPDGA--------GLLTAGEDGVIKIWS------- 132 (737)
T ss_pred eEEEEcCCceEEEecc-cchhhhhhhhh--------hhhhhhcccCCCCc--------eeeeecCCceEEEEe-------
Confidence 5888888999999986 57777777764 45666666666555 899999999999998
Q ss_pred cccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCC
Q 019405 147 AESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD 226 (341)
Q Consensus 147 ~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 226 (341)
..|.++.--+....+|.|++|.|+.+.++.+-. +.+.|=.+.-...+...+.|. +-|.++.| ++.
T Consensus 133 ---rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~h~~IKpL~~n~k~i~WkAHD---------GiiL~~~W--~~~ 197 (737)
T KOG1524|consen 133 ---RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQG-GHISIKPLAANSKIIRWRAHD---------GLVLSLSW--STQ 197 (737)
T ss_pred ---ccchHHHHHhhcCceeEEEEECCCCCceEEecC-CeEEEeecccccceeEEeccC---------cEEEEeec--Ccc
Confidence 333444433455679999999998877666543 467776665544444455543 66999999 889
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeE
Q 019405 227 HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRS 306 (341)
Q Consensus 227 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~ 306 (341)
.+++++|++|-..++||-.. . ++..-..|+.+|++++|+|+ ..++.++.. +++ +.....+.|..
T Consensus 198 s~lI~sgGED~kfKvWD~~G-~-~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R------------~~~p~~GSifn 261 (737)
T KOG1524|consen 198 SNIIASGGEDFRFKIWDAQG-A-NLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TAR------------FSSPRVGSIFN 261 (737)
T ss_pred ccceeecCCceeEEeecccC-c-ccccCChhccceeeeeeccc-cceeeeeee-eee------------ecCCCccceEE
Confidence 99999999999999999775 2 46666779999999999999 566666643 333 33334688999
Q ss_pred EEecCCCCEEEEEeCCCcEEEE
Q 019405 307 IARHPTLPIIASCGLDSYLRFW 328 (341)
Q Consensus 307 ~~~~~~~~~l~s~~~dg~v~iw 328 (341)
++|++||..++.|+..|.+.+=
T Consensus 262 lsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 262 LSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred EEEcCCCceeeccccCceEEEe
Confidence 9999999999999999977653
No 182
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=5.4e-17 Score=126.71 Aligned_cols=201 Identities=15% Similarity=0.228 Sum_probs=151.5
Q ss_pred eEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccc
Q 019405 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS 146 (341)
Q Consensus 67 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~ 146 (341)
.+|++..+|.|++||..+++.+..++.+. ..+..+.+.+.+. ...+.+++.||++++||++....
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~--------~~~N~vrf~~~ds------~h~v~s~ssDG~Vr~wD~Rs~~e- 106 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPP--------ATTNGVRFISCDS------PHGVISCSSDGTVRLWDIRSQAE- 106 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCC--------CcccceEEecCCC------CCeeEEeccCCeEEEEEeecchh-
Confidence 58999999999999999999999998842 3344555555322 11899999999999999976542
Q ss_pred cccCCceEEEEEeecCCceEEEEecCCCCEEEEeeC----CCeEEEEECCCCce-eeecCCCCCCccCccCCeeeeEEEE
Q 019405 147 AESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK----GVEVNVWDLDKCEK-IWTAKPPPKNSLGIFTPTWFTSAAF 221 (341)
Q Consensus 147 ~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~----d~~v~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~ 221 (341)
.....|....+.+..|++.+..++.+++|.. +-.|.+||++..++ +..+... |..-|+++.|
T Consensus 107 -----~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eS--------H~DDVT~lrF 173 (376)
T KOG1188|consen 107 -----SARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNES--------HNDDVTQLRF 173 (376)
T ss_pred -----hhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhh--------ccCcceeEEe
Confidence 2445565555567888888888888888754 56799999998766 4443322 4466999999
Q ss_pred EecCCCCEEEEEeCCCeEEEEEcCCCCc--eeEEEEecCCCeEEEEEcCCC-ceEEEEeCCCCEEEEECCCCeEEeEE
Q 019405 222 LSIDDHRKFVAGTNDHQVRLYDTSAQRR--PVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLLGCF 296 (341)
Q Consensus 222 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~iwd~~~~~~~~~~ 296 (341)
+ +.+.++|++|+.||.|.+||+..... ++...-.|...|..+.|...+ +.|.+-+......+|+++.+.....+
T Consensus 174 H-P~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~ 250 (376)
T KOG1188|consen 174 H-PSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWL 250 (376)
T ss_pred c-CCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcc
Confidence 8 45778999999999999999986432 233333367789999998877 55888888999999999988755444
No 183
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.77 E-value=2.1e-16 Score=142.15 Aligned_cols=287 Identities=14% Similarity=0.153 Sum_probs=189.5
Q ss_pred ceeeeecCCCCeEEEEEecCc--cCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheee
Q 019405 15 LRALTFDSLGLIKVIEARGEH--GGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS 92 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 92 (341)
--+++|+.||+||+|+..+.. ++..+-..+|......+.+++++..+. .+|+++.||.|++.+++-....+...
T Consensus 1062 s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~----~~Av~t~DG~v~~~~id~~~~~~~~~ 1137 (1431)
T KOG1240|consen 1062 SLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD----QFAVSTKDGSVRVLRIDHYNVSKRVA 1137 (1431)
T ss_pred ceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC----eEEEEcCCCeEEEEEcccccccccee
Confidence 347899999999999998862 244555567766778888999888777 79999999999999987521111110
Q ss_pred ccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEee---cCCceEEEE
Q 019405 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC---ASGTIAFSK 169 (341)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~---~~~~i~~~~ 169 (341)
...........+.++.+..+..... ...++.+...+.+..||+..... .|... ..+.|++++
T Consensus 1138 ~~~ri~n~~~~g~vv~m~a~~~~~~-----S~~lvy~T~~~~iv~~D~r~~~~----------~w~lk~~~~hG~vTSi~ 1202 (1431)
T KOG1240|consen 1138 TQVRIPNLKKDGVVVSMHAFTAIVQ-----SHVLVYATDLSRIVSWDTRMRHD----------AWRLKNQLRHGLVTSIV 1202 (1431)
T ss_pred eeeecccccCCCceEEeeccccccc-----ceeEEEEEeccceEEecchhhhh----------HHhhhcCccccceeEEE
Confidence 0000001123355666666554441 13788888889999999865442 23332 246899999
Q ss_pred ecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEec-CCCCEEEE-Ee-CCCeEEEEEcCC
Q 019405 170 VDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSI-DDHRKFVA-GT-NDHQVRLYDTSA 246 (341)
Q Consensus 170 ~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~l~~-~~-~d~~i~iwd~~~ 246 (341)
.+|.++++++|+..|.+.+||++=+.++.....+. ..++..+..+|- +.....++ +. ..+.|.+|++.+
T Consensus 1203 idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~--------~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~ 1274 (1431)
T KOG1240|consen 1203 IDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPA--------RAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMET 1274 (1431)
T ss_pred ecCCceEEEEecCCceEEEEEeecCceeecccCcc--------cCCcceEEeeccCCCCceEEEecccCCCceeeeeccc
Confidence 99999999999999999999999877776665443 244666665432 22234444 44 578899999998
Q ss_pred CCceeEEEEec-C------------------CCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEE--------------
Q 019405 247 QRRPVMSFDFR-E------------------TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLL-------------- 293 (341)
Q Consensus 247 ~~~~~~~~~~~-~------------------~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~-------------- 293 (341)
+.+ ...+-.. . -......+..-+..+++|+.|..|+.||....+..
T Consensus 1275 g~~-~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~ 1353 (1431)
T KOG1240|consen 1275 GLR-QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTN 1353 (1431)
T ss_pred Ccc-eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCcccccccc
Confidence 754 2222211 0 01112233334568899999999999997532111
Q ss_pred ---------------eE-------------------Ee-------ccccCceeEEEecCCC-CEEEEEeCCCcEEEEE
Q 019405 294 ---------------GC-------------------FI-------GKCSGSIRSIARHPTL-PIIASCGLDSYLRFWD 329 (341)
Q Consensus 294 ---------------~~-------------------~~-------~~~~~~i~~~~~~~~~-~~l~s~~~dg~v~iwd 329 (341)
.. .. ..|..+|++|++.... .+|++++.||.|+||.
T Consensus 1354 ~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1354 SESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred chhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 00 00 1135688888876544 5899999999999994
No 184
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.77 E-value=3.4e-15 Score=130.13 Aligned_cols=255 Identities=22% Similarity=0.291 Sum_probs=185.4
Q ss_pred ccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCc-chheeeccCCCCCCCCCCceeeEeeeecccccccccc
Q 019405 45 WGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD-LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS 123 (341)
Q Consensus 45 ~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (341)
+..+...+..+.+..... .++.++.|+.+.+|+...+. ....+.... ...+..+... ... ..
T Consensus 61 ~~~~~~~i~~~~~~~~~~----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~-~~~-----~~ 123 (466)
T COG2319 61 LRGHEDSITSIAFSPDGE----LLLSGSSDGTIKLWDLDNGEKLIKSLEGLH-------DSSVSKLALS-SPD-----GN 123 (466)
T ss_pred eeeccceEEEEEECCCCc----EEEEecCCCcEEEEEcCCCceeEEEEeccC-------CCceeeEEEE-CCC-----cc
Confidence 345677777777766665 78888899999999998776 445544421 1233333332 111 01
Q ss_pred ceeEEE-cccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeC-CCeEEEEECCCCceeeecC
Q 019405 124 RTLLTC-TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK-GVEVNVWDLDKCEKIWTAK 201 (341)
Q Consensus 124 ~~l~~~-~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~v~i~d~~~~~~~~~~~ 201 (341)
..++.. ..++.+.+|++.. ..........+...|..++++|++..+++++. ++.+++|++.++..+..+.
T Consensus 124 ~~~~~~~~~d~~~~~~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (466)
T COG2319 124 SILLASSSLDGTVKLWDLST--------PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLA 195 (466)
T ss_pred eEEeccCCCCccEEEEEecC--------CCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeec
Confidence 134443 4488999999864 01222223346678889999999998888885 9999999999877777666
Q ss_pred CCCCCccCccCCeeeeEEEEEecCCCC-EEEEEeCCCeEEEEEcCCCCceeE-EEEecCCCeEEEEEcCCCceEEEEeCC
Q 019405 202 PPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQVRLYDTSAQRRPVM-SFDFRETPIKAVAEEPDSFNIYIGNGS 279 (341)
Q Consensus 202 ~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~g~~d 279 (341)
.+. ..+.+++| .|++. .+++++.|+.|++||...+.. +. .+..|.... ...|+|++..+++++.|
T Consensus 196 ~~~---------~~v~~~~~--~~~~~~~~~~~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d 262 (466)
T COG2319 196 GHT---------DPVSSLAF--SPDGGLLIASGSSDGTIRLWDLSTGKL-LRSTLSGHSDSV-VSSFSPDGSLLASGSSD 262 (466)
T ss_pred cCC---------CceEEEEE--cCCcceEEEEecCCCcEEEEECCCCcE-EeeecCCCCcce-eEeECCCCCEEEEecCC
Confidence 633 56999999 67887 555558999999999885543 44 577777665 44899999888899999
Q ss_pred CCEEEEECCCCeE-EeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeee
Q 019405 280 GDLASVDIRTGKL-LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSA 338 (341)
Q Consensus 280 g~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 338 (341)
+.+++|+.+.... +..+..| ...|.++.|+|++..+++++.|+.+++||..+......
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 321 (466)
T COG2319 263 GTIRLWDLRSSSSLLRTLSGH-SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSS 321 (466)
T ss_pred CcEEEeeecCCCcEEEEEecC-CccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEE
Confidence 9999999987664 4445565 88999999999888888899999999999987765543
No 185
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.77 E-value=2.8e-17 Score=124.02 Aligned_cols=245 Identities=15% Similarity=0.108 Sum_probs=166.1
Q ss_pred CceeeeecCCCCeEEEEEecCccCccceeeecc-CCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheee
Q 019405 14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWG-DPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS 92 (341)
Q Consensus 14 ~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 92 (341)
+-|+++++..|.++.|.+... +....|+ .+...++-+.--+.+ .|.+-+.|+.+.+|++.-+..+..-.
T Consensus 25 ~~rL~sg~~~G~V~~w~lqt~-----r~~~~~r~~g~~~it~lq~~p~d-----~l~tqgRd~~L~lw~ia~s~~i~i~S 94 (323)
T KOG0322|consen 25 NERLMSGLSVGIVKMWVLQTE-----RDLPLIRLFGRLFITNLQSIPND-----SLDTQGRDPLLILWTIAYSAFISIHS 94 (323)
T ss_pred chhhhcccccceEEEEEeecC-----ccchhhhhhccceeeceeecCCc-----chhhcCCCceEEEEEccCcceEEEee
Confidence 456889999999999999987 3333555 355566555544433 38888899999999986532211100
Q ss_pred --c----------cC-----------CC----------------------CCCCCCCceeeEeeeeccccccccccceeE
Q 019405 93 --N----------AG-----------DS----------------------GAQPEDDGIVGLHLFKRQREESSSRSRTLL 127 (341)
Q Consensus 93 --~----------~~-----------~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 127 (341)
. +. +. ...+..+.+.|..+--... ..-.++
T Consensus 95 i~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~-----s~~lll 169 (323)
T KOG0322|consen 95 IVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACG-----STFLLL 169 (323)
T ss_pred eeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccccc-----ceEEEE
Confidence 0 00 00 0001122333333111111 112678
Q ss_pred EEcccceeEEEEeeeccccc-ccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCC--ce----eeec
Q 019405 128 TCTTKGKASMRSIEVTKVSA-ESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC--EK----IWTA 200 (341)
Q Consensus 128 ~~~~~g~~~i~~~~~~~~~~-~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~--~~----~~~~ 200 (341)
+|.++|.+.+|++......- -.....+..-...|.+++.++.+.+....=++|+.+..+..|++... .. ...+
T Consensus 170 aGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~l 249 (323)
T KOG0322|consen 170 AGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITL 249 (323)
T ss_pred EeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEe
Confidence 89999999999997652110 00111222223456789999999887777788888888999988642 21 1222
Q ss_pred CCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCC
Q 019405 201 KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG 280 (341)
Q Consensus 201 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg 280 (341)
+++ .+..+.. .||++.+|+++.|+.||+|..++.+ |+..++.|...|++++|+|+...+|+++.|+
T Consensus 250 knp-----------Gv~gvrI--RpD~KIlATAGWD~RiRVyswrtl~-pLAVLkyHsagvn~vAfspd~~lmAaaskD~ 315 (323)
T KOG0322|consen 250 KNP-----------GVSGVRI--RPDGKILATAGWDHRIRVYSWRTLN-PLAVLKYHSAGVNAVAFSPDCELMAAASKDA 315 (323)
T ss_pred cCC-----------CccceEE--ccCCcEEeecccCCcEEEEEeccCC-chhhhhhhhcceeEEEeCCCCchhhhccCCc
Confidence 222 2777888 8999999999999999999999976 6999999999999999999999999999999
Q ss_pred CEEEEEC
Q 019405 281 DLASVDI 287 (341)
Q Consensus 281 ~i~iwd~ 287 (341)
.|.+|++
T Consensus 316 rISLWkL 322 (323)
T KOG0322|consen 316 RISLWKL 322 (323)
T ss_pred eEEeeec
Confidence 9999986
No 186
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.77 E-value=4.7e-17 Score=134.33 Aligned_cols=247 Identities=13% Similarity=0.103 Sum_probs=161.6
Q ss_pred CCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeE
Q 019405 48 PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL 127 (341)
Q Consensus 48 ~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 127 (341)
|...+.++.++.... ++..+.|..+.+|+--+......+... .. .-...+...+... ..+.....++
T Consensus 13 ~~e~vc~v~w~~~ee-----i~~~~dDh~~~~~~~~~~~s~~~~~~p--~d-----f~pt~~h~~~rs~-~~g~~~d~~~ 79 (737)
T KOG1524|consen 13 NSEKVCCVDWSSNEE-----IYFVSDDHQIFKWSDVSRDSVEVAKLP--DD-----FVPTDMHLGGRSS-GGGKGSDTLL 79 (737)
T ss_pred cceeEEeecccccce-----EEEeccCceEEEeecccchhhhhhhCC--cc-----cCCcccccccccc-CCCCCcceEE
Confidence 444455555544444 555555667666654444433333321 11 1111111221111 1122334788
Q ss_pred EEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCc
Q 019405 128 TCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNS 207 (341)
Q Consensus 128 ~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~ 207 (341)
.++.||.+.|.+- .+.+..--..|.+.+.+-.|+|+|.-|++++.||.|++|.- +|-....+..
T Consensus 80 i~s~DGkf~il~k----------~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q----- 143 (737)
T KOG1524|consen 80 ICSNDGRFVILNK----------SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQ----- 143 (737)
T ss_pred EEcCCceEEEecc----------cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhh-----
Confidence 8999999988762 22222222246778999999999999999999999999984 3332222221
Q ss_pred cCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEEC
Q 019405 208 LGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDI 287 (341)
Q Consensus 208 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~ 287 (341)
....|.|++| .|+.+.++.+. .+.+.|=-+..... +..++.|.+-|.++.|++...++++|+.|-..++||.
T Consensus 144 ----~~~~v~c~~W--~p~S~~vl~c~-g~h~~IKpL~~n~k-~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~ 215 (737)
T KOG1524|consen 144 ----NEESIRCARW--APNSNSIVFCQ-GGHISIKPLAANSK-IIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA 215 (737)
T ss_pred ----cCceeEEEEE--CCCCCceEEec-CCeEEEeecccccc-eeEEeccCcEEEEeecCccccceeecCCceeEEeecc
Confidence 1256999999 77777666553 45667666665444 7778999999999999999999999999999999997
Q ss_pred CCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCce
Q 019405 288 RTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL 335 (341)
Q Consensus 288 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 335 (341)
. |+.+..-..| +.+|++++|+|+ ..++.+|.+ ++|+=..+.|..
T Consensus 216 ~-G~~Lf~S~~~-ey~ITSva~npd-~~~~v~S~n-t~R~~~p~~GSi 259 (737)
T KOG1524|consen 216 Q-GANLFTSAAE-EYAITSVAFNPE-KDYLLWSYN-TARFSSPRVGSI 259 (737)
T ss_pred c-CcccccCChh-ccceeeeeeccc-cceeeeeee-eeeecCCCccce
Confidence 5 7777777777 899999999999 666666543 555544444443
No 187
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=1.2e-14 Score=108.81 Aligned_cols=278 Identities=14% Similarity=0.109 Sum_probs=184.2
Q ss_pred eeeeecCCCCeEEEEEecCc------cCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcc--
Q 019405 16 RALTFDSLGLIKVIEARGEH------GGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL-- 87 (341)
Q Consensus 16 ~~~~~~~~g~i~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-- 87 (341)
-++++..+|.|.++.+..-. .|. ..+..+++|+++++.++|- | .+|++|+ ||.|+=|.+.....
T Consensus 24 ~l~agn~~G~iav~sl~sl~s~sa~~~gk-~~iv~eqahdgpiy~~~f~-d-----~~Lls~g-dG~V~gw~W~E~~es~ 95 (325)
T KOG0649|consen 24 YLFAGNLFGDIAVLSLKSLDSGSAEPPGK-LKIVPEQAHDGPIYYLAFH-D-----DFLLSGG-DGLVYGWEWNEEEESL 95 (325)
T ss_pred EEEEecCCCeEEEEEehhhhccccCCCCC-cceeeccccCCCeeeeeee-h-----hheeecc-CceEEEeeehhhhhhc
Confidence 37789999999998877531 222 2334567899999999977 2 2477777 69999998764322
Q ss_pred --hheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCce
Q 019405 88 --RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTI 165 (341)
Q Consensus 88 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i 165 (341)
...++...+......+-+-+...+..+..+ .++.++.|+.+.-||++ +|++..---.|...+
T Consensus 96 ~~K~lwe~~~P~~~~~~evPeINam~ldP~en-------Si~~AgGD~~~y~~dlE---------~G~i~r~~rGHtDYv 159 (325)
T KOG0649|consen 96 ATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN-------SILFAGGDGVIYQVDLE---------DGRIQREYRGHTDYV 159 (325)
T ss_pred cchhhhhhcCccccCcccCCccceeEeccCCC-------cEEEecCCeEEEEEEec---------CCEEEEEEcCCccee
Confidence 111111111111012223334445554443 66677789999999995 445544333577889
Q ss_pred EEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCc-cCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEc
Q 019405 166 AFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGI-FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDT 244 (341)
Q Consensus 166 ~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~ 244 (341)
.++........+++|+.||++++||.++++.+..+.........- ....||.+++. +..++++|+ ...+.+|.+
T Consensus 160 H~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~----~edWlvCGg-Gp~lslwhL 234 (325)
T KOG0649|consen 160 HSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV----NEDWLVCGG-GPKLSLWHL 234 (325)
T ss_pred eeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec----cCceEEecC-CCceeEEec
Confidence 999886667789999999999999999999988877654332211 12367888877 677888775 457999999
Q ss_pred CCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCC-CEEEEEeCCC
Q 019405 245 SAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL-PIIASCGLDS 323 (341)
Q Consensus 245 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~dg 323 (341)
+..+. ...+.. ..++..+.|-.+ .+++++..+.|.-|.+. |.+....+.. ....++..|+..- ++|-.++...
T Consensus 235 rsse~-t~vfpi-pa~v~~v~F~~d--~vl~~G~g~~v~~~~l~-Gvl~a~ip~~-s~~c~s~s~~~~p~k~~s~ag~s~ 308 (325)
T KOG0649|consen 235 RSSES-TCVFPI-PARVHLVDFVDD--CVLIGGEGNHVQSYTLN-GVLQANIPVE-STACYSASWQTSPIKFISIAGFSN 308 (325)
T ss_pred cCCCc-eEEEec-ccceeEeeeecc--eEEEeccccceeeeeec-cEEEEeccCC-ccceeeecccCCceEEEEecccce
Confidence 98664 665553 357788888655 78888888899999774 6655555544 4456666665443 3455566666
Q ss_pred cEEEE
Q 019405 324 YLRFW 328 (341)
Q Consensus 324 ~v~iw 328 (341)
.+.|+
T Consensus 309 ~~~i~ 313 (325)
T KOG0649|consen 309 KLHIL 313 (325)
T ss_pred eeeee
Confidence 67665
No 188
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.77 E-value=1e-17 Score=133.15 Aligned_cols=168 Identities=9% Similarity=0.089 Sum_probs=134.1
Q ss_pred ecCCceEEEEecC-CCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCe
Q 019405 160 CASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ 238 (341)
Q Consensus 160 ~~~~~i~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~ 238 (341)
.|.++|..++|+| +.+.||+|+.|.+|.||.+..+.....+..+. ..-.+|...|.-+.|+|. -.+.|++++.|.+
T Consensus 79 GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepv--v~L~gH~rrVg~V~wHPt-A~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 79 GHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPV--VELYGHQRRVGLVQWHPT-APNVLLSAGSDNT 155 (472)
T ss_pred CccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccce--EEEeecceeEEEEeeccc-chhhHhhccCCce
Confidence 3678899999998 56789999999999999997654444333211 112235577999999743 4568889999999
Q ss_pred EEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEE
Q 019405 239 VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIAS 318 (341)
Q Consensus 239 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 318 (341)
|.+||+.+++. +..+. |..-|.++.|+.+|.+|++.+.|..|+|||.++++.+..-.+|....-..+.|-.++.++-|
T Consensus 156 v~iWnv~tgea-li~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tT 233 (472)
T KOG0303|consen 156 VSIWNVGTGEA-LITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTT 233 (472)
T ss_pred EEEEeccCCce-eeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeee
Confidence 99999999886 55666 99999999999999999999999999999999999999888885556677888889984444
Q ss_pred Ee---CCCcEEEEEcCC
Q 019405 319 CG---LDSYLRFWDIKT 332 (341)
Q Consensus 319 ~~---~dg~v~iwd~~~ 332 (341)
|- .+..+-+||..+
T Consensus 234 Gfsr~seRq~aLwdp~n 250 (472)
T KOG0303|consen 234 GFSRMSERQIALWDPNN 250 (472)
T ss_pred ccccccccceeccCccc
Confidence 32 567899998765
No 189
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.77 E-value=1.2e-15 Score=118.18 Aligned_cols=238 Identities=14% Similarity=0.094 Sum_probs=154.7
Q ss_pred eEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcc--
Q 019405 54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT-- 131 (341)
Q Consensus 54 ~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-- 131 (341)
.++|..|.+ .+++|. |.-.+||+.+--+.....+.+ ..+-.++.+.+ ..+- ..++|+.
T Consensus 10 svs~NQD~S----cFava~-~~Gfriyn~~P~ke~~~r~~~------~~G~~~veMLf-R~N~--------laLVGGg~~ 69 (346)
T KOG2111|consen 10 SVSFNQDHS----CFAVAT-DTGFRIYNCDPFKESASRQFI------DGGFKIVEMLF-RSNY--------LALVGGGSR 69 (346)
T ss_pred EEEEccCCc----eEEEEe-cCceEEEecCchhhhhhhccc------cCchhhhhHhh-hhce--------EEEecCCCC
Confidence 377887777 577776 556899998642221111111 01111221111 1111 2223322
Q ss_pred ----cceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECC-CCceeeecCCCCCC
Q 019405 132 ----KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLD-KCEKIWTAKPPPKN 206 (341)
Q Consensus 132 ----~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~-~~~~~~~~~~~~~~ 206 (341)
...+.|||-. ....+.. .....+|..+.+.++ .|++.- .+.|++|... +.+.++.+.....
T Consensus 70 pky~pNkviIWDD~--------k~~~i~e--l~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~N- 135 (346)
T KOG2111|consen 70 PKYPPNKVIIWDDL--------KERCIIE--LSFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSN- 135 (346)
T ss_pred CCCCCceEEEEecc--------cCcEEEE--EEeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccC-
Confidence 2567777721 1113333 233567888888754 455443 4589999987 5555655554321
Q ss_pred ccCccCCeeeeEEEEEecCCCCEEEE-EeCCCeEEEEEcCCCCc-eeEEEEecCCCeEEEEEcCCCceEEEEeCCCC-EE
Q 019405 207 SLGIFTPTWFTSAAFLSIDDHRKFVA-GTNDHQVRLYDTSAQRR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGD-LA 283 (341)
Q Consensus 207 ~~~~~~~~~v~~~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~-i~ 283 (341)
|....+ ..|..+..+|+. |-.-|.|+|-|+...+. +-..+..|...|.+++.+-+|..+|+++..|+ ||
T Consensus 136 ------PkGlC~--~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIR 207 (346)
T KOG2111|consen 136 ------PKGLCS--LCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIR 207 (346)
T ss_pred ------CCceEe--ecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEE
Confidence 122222 222334445554 44568999999987543 34778889999999999999999999999988 89
Q ss_pred EEECCCCeEEeEEec-cccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCC
Q 019405 284 SVDIRTGKLLGCFIG-KCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR 333 (341)
Q Consensus 284 iwd~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 333 (341)
|||..+|+++.+++- .....|++|+|||+..+|+.+|+-|+|+||.++..
T Consensus 208 IFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 208 IFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 999999999999863 33568999999999999999999999999998753
No 190
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=9.5e-17 Score=127.78 Aligned_cols=250 Identities=16% Similarity=0.198 Sum_probs=179.4
Q ss_pred ccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCC------cchheeeccCCCCCCCCCCceeeEeeeeccccc
Q 019405 45 WGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG------DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREE 118 (341)
Q Consensus 45 ~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (341)
+.+|.+.|.++.||.++. +|++|+.|..+++|+++.. +++..... +|...|.|+.+-..+.
T Consensus 52 ~~~H~GCiNAlqFS~N~~----~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~-------~H~SNIF~L~F~~~N~-- 118 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDR----FLASGGDDMHGRVWNVDELMVRKTPKPIGVMEH-------PHRSNIFSLEFDLENR-- 118 (609)
T ss_pred hhhhccccceeeeccCCe----EEeecCCcceeeeechHHHHhhcCCCCceeccC-------ccccceEEEEEccCCe--
Confidence 346889999999998755 9999999999999998642 22222221 4667888998876666
Q ss_pred cccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeec-CCceEEEEecCCCCEEEEeeCCCeEEEEECCCCcee
Q 019405 119 SSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA-SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI 197 (341)
Q Consensus 119 ~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~ 197 (341)
.+.+|..++++..-+++... .+.++.... .+.|+.+..+|..+.+++.+.++.|.+||.+..+.-
T Consensus 119 ------~~~SG~~~~~VI~HDiEt~q--------si~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~ 184 (609)
T KOG4227|consen 119 ------FLYSGERWGTVIKHDIETKQ--------SIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNP 184 (609)
T ss_pred ------eEecCCCcceeEeeecccce--------eeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCC
Confidence 89999999999999998655 677766433 468999999999999999999999999999865411
Q ss_pred eecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEE------------------------
Q 019405 198 WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS------------------------ 253 (341)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~------------------------ 253 (341)
..+-.+.. .+.....+.|+ +....+|++.+..+-+.+||.+....++..
T Consensus 185 ~~~~~~AN------~~~~F~t~~F~-P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~ 257 (609)
T KOG4227|consen 185 ISLVLPAN------SGKNFYTAEFH-PETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGN 257 (609)
T ss_pred CceeeecC------CCccceeeeec-CCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCC
Confidence 11111100 12346777884 234567888888888999998753221100
Q ss_pred -------------EEec-----------C-------CCeEEEEEcCCCceEEEEeCCCCEEEEECCC----------C--
Q 019405 254 -------------FDFR-----------E-------TPIKAVAEEPDSFNIYIGNGSGDLASVDIRT----------G-- 290 (341)
Q Consensus 254 -------------~~~~-----------~-------~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~----------~-- 290 (341)
+..| + ..+.+++|-.+ ..+++|+.+-.|++|.+.. |
T Consensus 258 Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~ 336 (609)
T KOG4227|consen 258 QFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPRANDSYGFTQIGHD 336 (609)
T ss_pred eehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecc-eeeeccCcccceEEEecCCCccccCccccCcc
Confidence 0011 1 12344555433 3588999999999997642 1
Q ss_pred -----------eEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEc
Q 019405 291 -----------KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDI 330 (341)
Q Consensus 291 -----------~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~ 330 (341)
+.+..+++| ..-++.+.|+|...+|++.+-...++||.-
T Consensus 337 ~~~~~~~~~i~~~~~VLrGH-RSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 337 EEEMPSEIFIEKELTVLRGH-RSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred hhhCchhheecceeEEEecc-cccccceeecCCcceEeccchhhheecccc
Confidence 234567888 889999999999999999999999999964
No 191
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.75 E-value=5.6e-18 Score=146.46 Aligned_cols=260 Identities=12% Similarity=0.082 Sum_probs=184.2
Q ss_pred eeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccc
Q 019405 43 ERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSR 122 (341)
Q Consensus 43 ~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (341)
.++.+|...|+|++|-..+. ++++|+.|..++||..+++.++....+| .+.+..++....+.
T Consensus 184 krLlgH~naVyca~fDrtg~----~Iitgsdd~lvKiwS~et~~~lAs~rGh--------s~ditdlavs~~n~------ 245 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDRTGR----YIITGSDDRLVKIWSMETARCLASCRGH--------SGDITDLAVSSNNT------ 245 (1113)
T ss_pred HHHHhhhhheeeeeeccccc----eEeecCccceeeeeeccchhhhccCCCC--------ccccchhccchhhh------
Confidence 34557999999999887776 8999999999999999999999999884 46677777766555
Q ss_pred cceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCC
Q 019405 123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKP 202 (341)
Q Consensus 123 ~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~ 202 (341)
.+++++.|..|++|.+.... .+.+.. .|.+.|++++|+|-. +.+.||++++||.+-.-.+..-..
T Consensus 246 --~iaaaS~D~vIrvWrl~~~~--------pvsvLr-ghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp 310 (1113)
T KOG0644|consen 246 --MIAAASNDKVIRVWRLPDGA--------PVSVLR-GHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRP 310 (1113)
T ss_pred --hhhhcccCceEEEEecCCCc--------hHHHHh-ccccceeeeccCccc----cCCCCCceEeccccccccccCCCC
Confidence 88899999999999986543 333333 467899999999954 678899999999871111110000
Q ss_pred CC---CC------------------ccCccCCeeeeEEEE-------E--ecCCCCEEEEEeCCCeEEEEEcCCCCceeE
Q 019405 203 PP---KN------------------SLGIFTPTWFTSAAF-------L--SIDDHRKFVAGTNDHQVRLYDTSAQRRPVM 252 (341)
Q Consensus 203 ~~---~~------------------~~~~~~~~~v~~~~~-------~--~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 252 (341)
.. +. .-.......+.+++| . .+....+.+++-.+..+++|++.++.. ++
T Consensus 311 ~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l-~H 389 (1113)
T KOG0644|consen 311 LKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQL-LH 389 (1113)
T ss_pred CCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchh-hh
Confidence 00 00 000000000111111 0 001112344455567788999998764 88
Q ss_pred EEEecCCCeEEEEEcCCC-ceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcC
Q 019405 253 SFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331 (341)
Q Consensus 253 ~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~ 331 (341)
.+.+|...+..+.++|-+ +...+++.||...|||+-.|.+++.+.-. ...+..-.|+++|..++....-|.++|...-
T Consensus 390 ~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g-h~kl~d~kFSqdgts~~lsd~hgql~i~g~g 468 (1113)
T KOG0644|consen 390 NLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG-HGKLVDGKFSQDGTSIALSDDHGQLYILGTG 468 (1113)
T ss_pred hhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc-cceeeccccCCCCceEecCCCCCceEEeccC
Confidence 888999999999999965 55568899999999999988877665543 4677788999999999998888999998876
Q ss_pred CCceee
Q 019405 332 TRQLLS 337 (341)
Q Consensus 332 ~~~~~~ 337 (341)
.++...
T Consensus 469 qs~s~k 474 (1113)
T KOG0644|consen 469 QSKSQK 474 (1113)
T ss_pred CCcccc
Confidence 655443
No 192
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.75 E-value=7.7e-16 Score=138.54 Aligned_cols=271 Identities=17% Similarity=0.193 Sum_probs=181.4
Q ss_pred ceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcch-heeeccCCCCCCCCCCceeeEeeeeccccc
Q 019405 40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR-VAISNAGDSGAQPEDDGIVGLHLFKRQREE 118 (341)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (341)
.++..+.+|...+.-++.+... +.++++|+.||+|++||...-... .+++. ....++.+.++.++.......
T Consensus 1039 ~lVAhL~Ehs~~v~k~a~s~~~---~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS--~ltys~~~sr~~~vt~~~~~~-- 1111 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEH---TSLFVSGSDDGTVKVWNLRKLEGEGGSARS--ELTYSPEGSRVEKVTMCGNGD-- 1111 (1431)
T ss_pred eEeehhhhccccccceeecCCC---CceEEEecCCceEEEeeehhhhcCcceeee--eEEEeccCCceEEEEeccCCC--
Confidence 5677888899988877776554 348999999999999998642111 11111 001112346666666665555
Q ss_pred cccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEE-EecC-CCC-EEEEeeCCCeEEEEECCCCc
Q 019405 119 SSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS-KVDI-SEK-FSLFGGKGVEVNVWDLDKCE 195 (341)
Q Consensus 119 ~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~-~~~~-~~~-~l~~~~~d~~v~i~d~~~~~ 195 (341)
.++.++.||.+.+.+++..... ...-..++.-+....+.+..+ ++.. .+. .++.+..-+.|..||++...
T Consensus 1112 ------~~Av~t~DG~v~~~~id~~~~~-~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~ 1184 (1431)
T KOG1240|consen 1112 ------QFAVSTKDGSVRVLRIDHYNVS-KRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRH 1184 (1431)
T ss_pred ------eEEEEcCCCeEEEEEccccccc-cceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhh
Confidence 8999999999999998763211 001113344444444444433 3322 233 67888888999999999888
Q ss_pred eeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEe-cCCCeEEEEEcCC---Cc
Q 019405 196 KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF-RETPIKAVAEEPD---SF 271 (341)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~---~~ 271 (341)
..+.++....+ +.|++++. +|.++++++|+..|.+.+||++-+. ++..+.. +..++..+..+|- ..
T Consensus 1185 ~~w~lk~~~~h-------G~vTSi~i--dp~~~WlviGts~G~l~lWDLRF~~-~i~sw~~P~~~~i~~v~~~~~~~~~S 1254 (1431)
T KOG1240|consen 1185 DAWRLKNQLRH-------GLVTSIVI--DPWCNWLVIGTSRGQLVLWDLRFRV-PILSWEHPARAPIRHVWLCPTYPQES 1254 (1431)
T ss_pred hHHhhhcCccc-------cceeEEEe--cCCceEEEEecCCceEEEEEeecCc-eeecccCcccCCcceEEeeccCCCCc
Confidence 87777765432 66999999 8999999999999999999999643 5665542 4567888877763 23
Q ss_pred eEEEEe--CCCCEEEEECCCCeEEeEEeccc------------------cCceeEEEecCCCCEEEEEeCCCcEEEEEcC
Q 019405 272 NIYIGN--GSGDLASVDIRTGKLLGCFIGKC------------------SGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331 (341)
Q Consensus 272 ~l~~g~--~dg~i~iwd~~~~~~~~~~~~~~------------------~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~ 331 (341)
..++++ ..+.|.+|++.+|.+...+.... .-......+...+.++++|+.|..||.||..
T Consensus 1255 ~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1255 VSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPT 1334 (1431)
T ss_pred eEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCC
Confidence 444444 46889999999987665554320 0111223333445689999999999999987
Q ss_pred CCc
Q 019405 332 TRQ 334 (341)
Q Consensus 332 ~~~ 334 (341)
..+
T Consensus 1335 ~p~ 1337 (1431)
T KOG1240|consen 1335 RPE 1337 (1431)
T ss_pred Ccc
Confidence 644
No 193
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.75 E-value=2.5e-14 Score=113.15 Aligned_cols=264 Identities=12% Similarity=0.147 Sum_probs=176.7
Q ss_pred eecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccC--CeEEEeeCCCCcchheeeccCC
Q 019405 19 TFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKN--GLTDILNPLNGDLRVAISNAGD 96 (341)
Q Consensus 19 ~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~d--g~i~iw~~~~~~~~~~~~~~~~ 96 (341)
.|++|| .++++...- + + .+....+.+.++-.-+..+ ++|..+.+ ..+++++.+.+..+..+...
T Consensus 22 vGs~~G-yk~~~~~~~--~--k---~~~~~~~~~~IvEmLFSSS----LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fp-- 87 (391)
T KOG2110|consen 22 VGSKDG-YKIFSCSPF--E--K---CFSKDTEGVSIVEMLFSSS----LVAIVSIKQPRKLKVVHFKKKTTICEIFFP-- 87 (391)
T ss_pred ccCCCc-eeEEecCch--H--H---hhcccCCCeEEEEeecccc----eeEEEecCCCceEEEEEcccCceEEEEecC--
Confidence 444555 355555543 1 1 2323344555555444444 55554443 45999999877777766652
Q ss_pred CCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCE
Q 019405 97 SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKF 176 (341)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~ 176 (341)
.+|.++..... +|+++-++. +.|+|+...+... +|..|. .+...+..+.+++.+.+
T Consensus 88 -------t~IL~VrmNr~----------RLvV~Lee~-IyIydI~~MklLh-----TI~t~~-~n~~gl~AlS~n~~n~y 143 (391)
T KOG2110|consen 88 -------TSILAVRMNRK----------RLVVCLEES-IYIYDIKDMKLLH-----TIETTP-PNPKGLCALSPNNANCY 143 (391)
T ss_pred -------CceEEEEEccc----------eEEEEEccc-EEEEecccceeeh-----hhhccC-CCccceEeeccCCCCce
Confidence 55666655322 667666555 9999997655321 333332 13455777777777788
Q ss_pred EEEe--eCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCe-EEEEEcCCCCceeEE
Q 019405 177 SLFG--GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ-VRLYDTSAQRRPVMS 253 (341)
Q Consensus 177 l~~~--~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~ 253 (341)
++.- ...|.|.+||..+.+....+..|. +.+.+++| +++|.+||+++..|+ ||+|.+.++++ +..
T Consensus 144 lAyp~s~t~GdV~l~d~~nl~~v~~I~aH~---------~~lAalaf--s~~G~llATASeKGTVIRVf~v~~G~k-l~e 211 (391)
T KOG2110|consen 144 LAYPGSTTSGDVVLFDTINLQPVNTINAHK---------GPLAALAF--SPDGTLLATASEKGTVIRVFSVPEGQK-LYE 211 (391)
T ss_pred EEecCCCCCceEEEEEcccceeeeEEEecC---------CceeEEEE--CCCCCEEEEeccCceEEEEEEcCCccE-eee
Confidence 8853 346899999999999988888765 66999999 999999999999997 68999998876 777
Q ss_pred EEecC--CCeEEEEEcCCCceEEEEeCCCCEEEEECCCCe-------------------------------------EEe
Q 019405 254 FDFRE--TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK-------------------------------------LLG 294 (341)
Q Consensus 254 ~~~~~--~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~-------------------------------------~~~ 294 (341)
|+... ..|.+++|+|++++|++.+..++|++|.+..-. ...
T Consensus 212 FRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FA 291 (391)
T KOG2110|consen 212 FRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFA 291 (391)
T ss_pred eeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhcccee
Confidence 76543 357889999999999999999999999775311 000
Q ss_pred EEeccccC--ceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405 295 CFIGKCSG--SIRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (341)
Q Consensus 295 ~~~~~~~~--~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 332 (341)
..+....+ .+..+.=.+..+++..++.||.++.|.+..
T Consensus 292 t~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~ 331 (391)
T KOG2110|consen 292 TAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPP 331 (391)
T ss_pred EEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCC
Confidence 01111011 233333234678899999999999998764
No 194
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1.7e-15 Score=132.03 Aligned_cols=287 Identities=14% Similarity=0.117 Sum_probs=185.3
Q ss_pred eeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCC
Q 019405 17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGD 96 (341)
Q Consensus 17 ~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 96 (341)
.+-+..+..|+++...+. ..+..+.+|..++..+.+.+...+ ..++.+.+.||.|++||..++..++++....
T Consensus 30 ~l~~~~~~~V~VyS~~Tg-----~~i~~l~~~~a~l~s~~~~~~~~~-~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~- 102 (792)
T KOG1963|consen 30 FLFLCTGNFVKVYSTATG-----ECITSLEDHTAPLTSVIVLPSSEN-ANYLIVCSLDGTIRVWDWSDGELLKTFDNNL- 102 (792)
T ss_pred EEEEeeCCEEEEEecchH-----hhhhhcccccCccceeeecCCCcc-ceEEEEEecCccEEEecCCCcEEEEEEecCC-
Confidence 333444556777777765 556678889999999888877764 3478899999999999999999988887632
Q ss_pred CCCCCCCCceeeEeeeecccccc-----ccc-cceeEEEccc--ceeEEEEeeecccccccCCceEEEEEeecCCceEEE
Q 019405 97 SGAQPEDDGIVGLHLFKRQREES-----SSR-SRTLLTCTTK--GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS 168 (341)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~l~~~~~~--g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~ 168 (341)
++..+.+.+...... +.. ...+.+.+.+ ++..=+.+.... ....-+...+ ..-.++
T Consensus 103 --------~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~-------~~~~d~~~~~-~~~~~I 166 (792)
T KOG1963|consen 103 --------PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFD-------SAKGDFLKEH-QEPKSI 166 (792)
T ss_pred --------ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeecc-------ccchhhhhhh-cCCccE
Confidence 122111111000000 000 0011111111 111111110000 0000001111 113466
Q ss_pred EecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCC--
Q 019405 169 KVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA-- 246 (341)
Q Consensus 169 ~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~-- 246 (341)
..++.+++.+..-.+ .+.+|+..+.... ..... ....|...+++.++ +|++++++++..||.|.+|.-..
T Consensus 167 ~~~~~ge~~~i~~~~-~~~~~~v~~~~~~--~~~~~---~~~~Htf~~t~~~~--spn~~~~Aa~d~dGrI~vw~d~~~~ 238 (792)
T KOG1963|consen 167 VDNNSGEFKGIVHMC-KIHIYFVPKHTKH--TSSRD---ITVHHTFNITCVAL--SPNERYLAAGDSDGRILVWRDFGSS 238 (792)
T ss_pred EEcCCceEEEEEEee-eEEEEEeccccee--eccch---hhhhhcccceeEEe--ccccceEEEeccCCcEEEEeccccc
Confidence 777777776665554 6889998775521 11111 11223444889999 89999999999999999996433
Q ss_pred -CCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcE
Q 019405 247 -QRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYL 325 (341)
Q Consensus 247 -~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v 325 (341)
.....+.+..|..+|.+++|+++|.+|++|+.+|.+.+|.+.+++. .-++.- .++|..+.++||+...+....|+.|
T Consensus 239 ~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k-qfLPRL-gs~I~~i~vS~ds~~~sl~~~DNqI 316 (792)
T KOG1963|consen 239 DDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKK-QFLPRL-GSPILHIVVSPDSDLYSLVLEDNQI 316 (792)
T ss_pred cccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCc-cccccc-CCeeEEEEEcCCCCeEEEEecCceE
Confidence 1223567888999999999999999999999999999999999882 233333 7899999999999999999999999
Q ss_pred EEEEcCCCcee
Q 019405 326 RFWDIKTRQLL 336 (341)
Q Consensus 326 ~iwd~~~~~~~ 336 (341)
.+-...+....
T Consensus 317 ~li~~~dl~~k 327 (792)
T KOG1963|consen 317 HLIKASDLEIK 327 (792)
T ss_pred EEEeccchhhh
Confidence 99887665443
No 195
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.74 E-value=3.8e-17 Score=130.31 Aligned_cols=172 Identities=15% Similarity=0.142 Sum_probs=139.5
Q ss_pred cCCceEEEEecCCCC-EEEEeeCCCeEEEEECCCCceee---ecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCC
Q 019405 161 ASGTIAFSKVDISEK-FSLFGGKGVEVNVWDLDKCEKIW---TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND 236 (341)
Q Consensus 161 ~~~~i~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 236 (341)
...++..+.|.++.. .+++|+.|..|++|-+..++.-. .+.-+ ..-..|...|+++.| +|+|++|++|+.+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~---s~Ls~H~~aVN~vRf--~p~gelLASg~D~ 86 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYL---SSLSRHTRAVNVVRF--SPDGELLASGGDG 86 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEe---ecccCCcceeEEEEE--cCCcCeeeecCCC
Confidence 467899999988766 99999999999999887543221 00000 011124577999999 9999999999999
Q ss_pred CeEEEEEcC--------C-----CC--ceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEecccc
Q 019405 237 HQVRLYDTS--------A-----QR--RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCS 301 (341)
Q Consensus 237 ~~i~iwd~~--------~-----~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~ 301 (341)
|.|.+|... + .+ ...+.+.+|...|..++|+|++.++++++.|+.+++||+..|+.+..+..| .
T Consensus 87 g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh-~ 165 (434)
T KOG1009|consen 87 GEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDH-E 165 (434)
T ss_pred ceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccc-c
Confidence 999999765 2 00 123456679999999999999999999999999999999999999999998 8
Q ss_pred CceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeee
Q 019405 302 GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSA 338 (341)
Q Consensus 302 ~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 338 (341)
.-+..++|.|-++++++-+.|...+.+.+...+.++.
T Consensus 166 ~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~ 202 (434)
T KOG1009|consen 166 HYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKR 202 (434)
T ss_pred cccceeecchhhhhhhhhccCcccceeeeeeeeeeee
Confidence 9999999999999999999999888888876655543
No 196
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=4e-17 Score=133.15 Aligned_cols=268 Identities=18% Similarity=0.244 Sum_probs=182.3
Q ss_pred eeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccc
Q 019405 43 ERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSR 122 (341)
Q Consensus 43 ~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (341)
.++..|.+.|..|.|...+. .|++|+.|..|.+||+..++....+.. +|...+....+++..+
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd----~l~SgSDD~~vv~WdW~~~~~~l~f~S-------GH~~NvfQaKFiP~s~------ 198 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGD----VLASGSDDLQVVVWDWVSGSPKLSFES-------GHCNNVFQAKFIPFSG------ 198 (559)
T ss_pred hcccCCCCccceeeecccCc----eeeccCccceEEeehhhccCccccccc-------ccccchhhhhccCCCC------
Confidence 45667999999888887666 899999999999999998877766654 2333333333433322
Q ss_pred cceeEEEcccceeEEEEeeeccc---------------------------ccccCCceEEEEEeecC-------------
Q 019405 123 SRTLLTCTTKGKASMRSIEVTKV---------------------------SAESSCSTVKSWNVCAS------------- 162 (341)
Q Consensus 123 ~~~l~~~~~~g~~~i~~~~~~~~---------------------------~~~~~~~~v~~~~~~~~------------- 162 (341)
+..+++++.||.+++-.+..... .+.+.|+.+.-+++...
T Consensus 199 d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~ 278 (559)
T KOG1334|consen 199 DRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADE 278 (559)
T ss_pred CcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCC
Confidence 22555555555555444322110 12334444443333221
Q ss_pred C---ceEEEEecCCC-CEEEEeeCCCeEEEEECCCCcee------eecCCCCCCccCccCCeeeeEEEEEecCCCCEEEE
Q 019405 163 G---TIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKI------WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA 232 (341)
Q Consensus 163 ~---~i~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 232 (341)
. ....++.+|.. ..+++++.|..+++||.+.-... ..+..+. +....+..|++++| +.++.-|++
T Consensus 279 ~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~h---l~~d~~v~ITgl~Y--sh~~sElLa 353 (559)
T KOG1334|consen 279 KERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHH---LVEDDPVNITGLVY--SHDGSELLA 353 (559)
T ss_pred ccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCcc---ccccCcccceeEEe--cCCccceee
Confidence 1 35667777755 47889999999999998753221 2222111 11123466999999 767777777
Q ss_pred EeCCCeEEEEEcCCCC-----------ceeEE-EEecCC--CeEEEEE-cCCCceEEEEeCCCCEEEEECCCCeEEeEEe
Q 019405 233 GTNDHQVRLYDTSAQR-----------RPVMS-FDFRET--PIKAVAE-EPDSFNIYIGNGSGDLASVDIRTGKLLGCFI 297 (341)
Q Consensus 233 ~~~d~~i~iwd~~~~~-----------~~~~~-~~~~~~--~v~~~~~-~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~ 297 (341)
+..|-.|++|.-..+. ..+.. +++|.. .|..+-| -|...++++|+.-|.|.||+-.+++.+.-+.
T Consensus 354 SYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Me 433 (559)
T KOG1334|consen 354 SYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFME 433 (559)
T ss_pred eecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhh
Confidence 7889999999533211 11223 677754 4666655 6888999999999999999999999999898
Q ss_pred ccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCC
Q 019405 298 GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR 333 (341)
Q Consensus 298 ~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 333 (341)
+. ..-|+||.=+|--++||+++.|..|+||-..+.
T Consensus 434 gD-r~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 434 GD-RHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred cc-cceEeccCCCCCCchhhccCCccceeeecCCcc
Confidence 87 569999999999999999999999999987443
No 197
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.73 E-value=6.1e-16 Score=133.92 Aligned_cols=238 Identities=15% Similarity=0.133 Sum_probs=167.2
Q ss_pred CCeEEEeeCCCC-cchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCc
Q 019405 74 NGLTDILNPLNG-DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCS 152 (341)
Q Consensus 74 dg~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~ 152 (341)
++.+.||++.+. .+...+.. ...+.++.+.+.+.. .++.|..+|.+.+||+......- ..
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~~---------~s~v~~~~f~p~~p~-------ll~gG~y~GqV~lWD~~~~~~~~---~s 281 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLES---------PSEVTCLKFCPFDPN-------LLAGGCYNGQVVLWDLRKGSDTP---PS 281 (555)
T ss_pred CceEEEEecCCCCCceEEEec---------CCceeEEEeccCCcc-------eEEeeccCceEEEEEccCCCCCC---Cc
Confidence 358999999875 33333332 367888888777664 88999999999999997665310 11
Q ss_pred eEEEEEeecCCceEEEEecCCC--CEEEEeeCCCeEEEEECCCCce-eee--cCCCCCCccCccCCeeeeEEEEEecCCC
Q 019405 153 TVKSWNVCASGTIAFSKVDISE--KFSLFGGKGVEVNVWDLDKCEK-IWT--AKPPPKNSLGIFTPTWFTSAAFLSIDDH 227 (341)
Q Consensus 153 ~v~~~~~~~~~~i~~~~~~~~~--~~l~~~~~d~~v~i~d~~~~~~-~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 227 (341)
.+..-...|..++..+.|-.+. .-+++++.||.|..|+++.... ... ................++++.|. ..+.
T Consensus 282 ~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~-~~~p 360 (555)
T KOG1587|consen 282 GLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFE-PTDP 360 (555)
T ss_pred ccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeec-cCCC
Confidence 3444455677888888886543 4599999999999998864322 111 11111001111123558899996 4566
Q ss_pred CEEEEEeCCCeEEEEEcCC---CC----ceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECC-CCeEEeEEecc
Q 019405 228 RKFVAGTNDHQVRLYDTSA---QR----RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR-TGKLLGCFIGK 299 (341)
Q Consensus 228 ~~l~~~~~d~~i~iwd~~~---~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~-~~~~~~~~~~~ 299 (341)
+.+++|+.+|.|..=+... .. .+...+..|.++|+++.++|=+..++..+.|.+++||... ...++..+..+
T Consensus 361 ~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~ 440 (555)
T KOG1587|consen 361 NHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSS 440 (555)
T ss_pred ceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhc
Confidence 7899999999987733332 22 1233556688999999999987666655559999999988 66777777776
Q ss_pred ccCceeEEEecCCCC-EEEEEeCCCcEEEEEcCC
Q 019405 300 CSGSIRSIARHPTLP-IIASCGLDSYLRFWDIKT 332 (341)
Q Consensus 300 ~~~~i~~~~~~~~~~-~l~s~~~dg~v~iwd~~~ 332 (341)
...|++++|||... .|+++..||.|.+||+..
T Consensus 441 -~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~ 473 (555)
T KOG1587|consen 441 -PDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQ 473 (555)
T ss_pred -cceeeeeEEcCcCceEEEEEcCCCceehhhhhc
Confidence 67799999999886 788888999999999864
No 198
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.73 E-value=6.5e-16 Score=131.00 Aligned_cols=238 Identities=11% Similarity=0.104 Sum_probs=179.2
Q ss_pred CceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEc
Q 019405 51 SNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT 130 (341)
Q Consensus 51 ~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 130 (341)
.+.-++|.||++ .|+.+. +..+.|||+.+|..+.++++| .+.+.|++|....+ .+++|+
T Consensus 14 ci~d~afkPDGs----qL~lAA-g~rlliyD~ndG~llqtLKgH--------KDtVycVAys~dGk--------rFASG~ 72 (1081)
T KOG1538|consen 14 CINDIAFKPDGT----QLILAA-GSRLLVYDTSDGTLLQPLKGH--------KDTVYCVAYAKDGK--------RFASGS 72 (1081)
T ss_pred chheeEECCCCc----eEEEec-CCEEEEEeCCCcccccccccc--------cceEEEEEEccCCc--------eeccCC
Confidence 778889988888 455544 579999999999999999985 47788888877777 999999
Q ss_pred ccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCc
Q 019405 131 TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGI 210 (341)
Q Consensus 131 ~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~ 210 (341)
.|..+.+|+-.. +|.+ ...|+..|.|+.|+|-...+++++.+ ..-+|..+...... +.
T Consensus 73 aDK~VI~W~~kl--------EG~L---kYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K----~k------ 130 (1081)
T KOG1538|consen 73 ADKSVIIWTSKL--------EGIL---KYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSK----HK------ 130 (1081)
T ss_pred CceeEEEecccc--------ccee---eeccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHh----hh------
Confidence 999999998542 2233 33578899999999999999999876 47788776432221 11
Q ss_pred cCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEE--ecCCCeEEEEEcCCC-----ceEEEEeCCCCEE
Q 019405 211 FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD--FRETPIKAVAEEPDS-----FNIYIGNGSGDLA 283 (341)
Q Consensus 211 ~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~-----~~l~~g~~dg~i~ 283 (341)
....+.+++| ..||.+++.|-.||+|.+-+-...+. +..-+ +.+++|++++|+|.. ..+++.....++.
T Consensus 131 -ss~R~~~CsW--tnDGqylalG~~nGTIsiRNk~gEek-~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLS 206 (1081)
T KOG1538|consen 131 -SSSRIICCSW--TNDGQYLALGMFNGTISIRNKNGEEK-VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLS 206 (1081)
T ss_pred -hheeEEEeee--cCCCcEEEEeccCceEEeecCCCCcc-eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeE
Confidence 1255889999 89999999999999999986554222 33222 367899999999853 5677888888888
Q ss_pred EEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeee
Q 019405 284 SVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSA 338 (341)
Q Consensus 284 iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 338 (341)
++.+. |+.+..-+.- .-.-.++.+.++|.+++.|+.|+.+++|.-+ |-.+.+
T Consensus 207 Fy~Ls-G~~Igk~r~L-~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~-GvrLGT 258 (1081)
T KOG1538|consen 207 FYQLS-GKQIGKDRAL-NFDPCCISYFTNGEYILLGGSDKQLSLFTRD-GVRLGT 258 (1081)
T ss_pred EEEec-ceeecccccC-CCCchhheeccCCcEEEEccCCCceEEEeec-CeEEee
Confidence 88774 6665543332 3345688999999999999999999998643 555544
No 199
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.73 E-value=2.8e-16 Score=132.38 Aligned_cols=240 Identities=14% Similarity=0.114 Sum_probs=165.8
Q ss_pred eEEE--EccCCeEEEeeCCC-Ccchh-eeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeee
Q 019405 67 LLAV--ARKNGLTDILNPLN-GDLRV-AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEV 142 (341)
Q Consensus 67 ~l~~--~~~dg~i~iw~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~ 142 (341)
++|+ ++..|.|-||++.. |+.-. .+... .....++.+.|-+-+.. .|++++.||.|.+|.+..
T Consensus 593 rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l------~Ngt~vtDl~WdPFD~~-------rLAVa~ddg~i~lWr~~a 659 (1012)
T KOG1445|consen 593 RVAVPLAGSGGVIAIYELNEPGRLPDGVMPGL------FNGTLVTDLHWDPFDDE-------RLAVATDDGQINLWRLTA 659 (1012)
T ss_pred eEEEEecCCCceEEEEEcCCCCCCCccccccc------ccCceeeecccCCCChH-------HeeecccCceEEEEEecc
Confidence 4555 56679999999865 22211 11111 13356777777666554 899999999999999875
Q ss_pred cccccccCCceEEEEEeecCCceEEEEecC-CCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEE
Q 019405 143 TKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAF 221 (341)
Q Consensus 143 ~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 221 (341)
+..... ....-.+.. .|...|+++.|+| ..+.|++++.|-+|++||+.+++....+.+|. +.|..++|
T Consensus 660 ~gl~e~-~~tPe~~lt-~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHt---------dqIf~~AW 728 (1012)
T KOG1445|consen 660 NGLPEN-EMTPEKILT-IHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHT---------DQIFGIAW 728 (1012)
T ss_pred CCCCcc-cCCcceeee-cccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCc---------CceeEEEE
Confidence 543211 111122222 3678899999999 45788999999999999999999888888865 66999999
Q ss_pred EecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecC-CCeEEEEEcCCCceEEEEeCC----CCEEEEECCCC--eEEe
Q 019405 222 LSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE-TPIKAVAEEPDSFNIYIGNGS----GDLASVDIRTG--KLLG 294 (341)
Q Consensus 222 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~g~~d----g~i~iwd~~~~--~~~~ 294 (341)
+|+|+++++.+.||+|++|+.+..+.++..-.+-. ..--.+.|.-+|+++++.+.| ..|.+||.++- ..+.
T Consensus 729 --SpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~ 806 (1012)
T KOG1445|consen 729 --SPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLY 806 (1012)
T ss_pred --CCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcce
Confidence 99999999999999999999998777665543321 223357788899998887766 45888988753 3333
Q ss_pred EEeccccCceeEEEecCCCC-EEEEEeCCCcEEEEEcCC
Q 019405 295 CFIGKCSGSIRSIARHPTLP-IIASCGLDSYLRFWDIKT 332 (341)
Q Consensus 295 ~~~~~~~~~i~~~~~~~~~~-~l~s~~~dg~v~iwd~~~ 332 (341)
+..-...-.+.--.+.+|.. +|++|-.|..|.+|.+-.
T Consensus 807 t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~ 845 (1012)
T KOG1445|consen 807 TQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIY 845 (1012)
T ss_pred eeeecccCccccccccCCCceEEEecCCCceEEEEEecC
Confidence 32211011122223445555 677888899999998754
No 200
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.73 E-value=2.2e-15 Score=115.42 Aligned_cols=116 Identities=21% Similarity=0.338 Sum_probs=93.3
Q ss_pred eeeeEEEEEecCCCCEEEEE--eCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCC---CCEEEEECC
Q 019405 214 TWFTSAAFLSIDDHRKFVAG--TNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS---GDLASVDIR 288 (341)
Q Consensus 214 ~~v~~~~~~~~~~~~~l~~~--~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d---g~i~iwd~~ 288 (341)
+.|.+++| +|+++.|++. ..++.|.+||++. + ++..+ +...+..+.|+|+|++|++++.+ |.|.+||.+
T Consensus 60 ~~I~~~~W--sP~g~~favi~g~~~~~v~lyd~~~-~-~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~ 133 (194)
T PF08662_consen 60 GPIHDVAW--SPNGNEFAVIYGSMPAKVTLYDVKG-K-KIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVR 133 (194)
T ss_pred CceEEEEE--CcCCCEEEEEEccCCcccEEEcCcc-c-EeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECC
Confidence 45999999 8999887654 4567999999973 3 35554 45678899999999999998754 669999999
Q ss_pred CCeEEeEEeccccCceeEEEecCCCCEEEEEeC------CCcEEEEEcCCCceeeee
Q 019405 289 TGKLLGCFIGKCSGSIRSIARHPTLPIIASCGL------DSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 289 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~------dg~v~iwd~~~~~~~~~~ 339 (341)
+.+.+..+.. ..++.++|+|+|++|+++.. |+.++||+.. |+++.+.
T Consensus 134 ~~~~i~~~~~---~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 134 KKKKISTFEH---SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred CCEEeecccc---CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence 9999887753 35789999999999998874 7899999995 7776653
No 201
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.71 E-value=3.8e-17 Score=132.49 Aligned_cols=224 Identities=8% Similarity=0.076 Sum_probs=174.6
Q ss_pred CCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEe
Q 019405 61 DSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSI 140 (341)
Q Consensus 61 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~ 140 (341)
...+|.+|+.|+.-|.|..+|+.+++...++... ..+..+.|+... .+++......+.|||=
T Consensus 137 ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~---------Etv~Dv~~LHne---------q~~AVAQK~y~yvYD~ 198 (545)
T KOG1272|consen 137 YTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM---------ETVRDVTFLHNE---------QFFAVAQKKYVYVYDN 198 (545)
T ss_pred ecCCccEEEecCCccceeeeecccceeeeeeehh---------hhhhhhhhhcch---------HHHHhhhhceEEEecC
Confidence 3444559999999999999999999988888763 445556666554 4555556677777762
Q ss_pred eecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEE
Q 019405 141 EVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAA 220 (341)
Q Consensus 141 ~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 220 (341)
. -+.+..+.....|..+.|-|..-+|++++..|.++.-|+.+|+.+..+.... +.+..++
T Consensus 199 ~-----------GtElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~---------G~~~vm~ 258 (545)
T KOG1272|consen 199 N-----------GTELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGA---------GRTDVMK 258 (545)
T ss_pred C-----------CcEEeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccC---------Cccchhh
Confidence 2 1233334445678889999988899999999999999999999988877654 3355555
Q ss_pred EEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccc
Q 019405 221 FLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC 300 (341)
Q Consensus 221 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~ 300 (341)
- +|-+..+-+|..+|+|.+|.....+ |+..+..|.++|.++++.++|+++++.+.|..++|||++....+.++..
T Consensus 259 q--NP~NaVih~GhsnGtVSlWSP~ske-PLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-- 333 (545)
T KOG1272|consen 259 Q--NPYNAVIHLGHSNGTVSLWSPNSKE-PLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-- 333 (545)
T ss_pred c--CCccceEEEcCCCceEEecCCCCcc-hHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec--
Confidence 5 7777888999999999999988744 6777778999999999999999999999999999999999887777665
Q ss_pred cCceeEEEecCCCCEEEEEeCCCcEEEEE
Q 019405 301 SGSIRSIARHPTLPIIASCGLDSYLRFWD 329 (341)
Q Consensus 301 ~~~i~~~~~~~~~~~l~s~~~dg~v~iwd 329 (341)
..+...+++|..| +++.+....|.||.
T Consensus 334 p~~a~~ls~Sqkg--lLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 334 PHPASNLSLSQKG--LLALSYGDHVQIWK 360 (545)
T ss_pred CCCcccccccccc--ceeeecCCeeeeeh
Confidence 2467778888666 44555666899994
No 202
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.70 E-value=5e-15 Score=122.53 Aligned_cols=178 Identities=15% Similarity=0.195 Sum_probs=136.6
Q ss_pred eEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccc
Q 019405 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS 146 (341)
Q Consensus 67 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~ 146 (341)
-|+.|-.-|.|.+.|....+..+.+..... -....++|+.|.+..+. .++++..+|.+.+++.+..-.+
T Consensus 187 dllIGf~tGqvq~idp~~~~~sklfne~r~----i~ktsvT~ikWvpg~~~-------~Fl~a~~sGnlyly~~~~~~~~ 255 (636)
T KOG2394|consen 187 DLLIGFTTGQVQLIDPINFEVSKLFNEERL----INKSSVTCIKWVPGSDS-------LFLVAHASGNLYLYDKEIVCGA 255 (636)
T ss_pred ceEEeeccCceEEecchhhHHHHhhhhccc----ccccceEEEEEEeCCCc-------eEEEEEecCceEEeeccccccC
Confidence 488888889999999876433332322111 13378899999988775 8899999999999976432111
Q ss_pred --------------------cccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCC
Q 019405 147 --------------------AESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKN 206 (341)
Q Consensus 147 --------------------~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~ 206 (341)
.-...+++..|... .+.|..++|+|||++||+.+.||.++|||..+.+.+-.++.--
T Consensus 256 t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~-~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYF-- 332 (636)
T KOG2394|consen 256 TAPSYQALKDGDQFAILTSKSKKTRNPVARWHIG-EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYF-- 332 (636)
T ss_pred CCCcccccCCCCeeEEeeeeccccCCccceeEec-cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhc--
Confidence 11133566667664 3489999999999999999999999999999877665544322
Q ss_pred ccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcC
Q 019405 207 SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEP 268 (341)
Q Consensus 207 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 268 (341)
+...|++| +|||++|++|++|..|.||.+...+ .+..-++|.++|..++|.|
T Consensus 333 -------GGLLCvcW--SPDGKyIvtGGEDDLVtVwSf~erR-VVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 333 -------GGLLCVCW--SPDGKYIVTGGEDDLVTVWSFEERR-VVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred -------cceEEEEE--cCCccEEEecCCcceEEEEEeccce-EEEeccccccceeeEeecc
Confidence 44899999 9999999999999999999999855 4788889999999999987
No 203
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=5.4e-14 Score=122.86 Aligned_cols=291 Identities=12% Similarity=0.069 Sum_probs=189.4
Q ss_pred ceeeeecCCCCeEEEEEec-CccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeec
Q 019405 15 LRALTFDSLGLIKVIEARG-EHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN 93 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 93 (341)
.-+.+++.||.|.+|+-.. +..........| |...|.+++|+.++. +|++|+..|.+.+|..++++ .+-+..
T Consensus 218 ~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHW--H~~~V~~L~fS~~G~----~LlSGG~E~VLv~Wq~~T~~-kqfLPR 290 (792)
T KOG1963|consen 218 RYLAAGDSDGRILVWRDFGSSDDSETCTLLHW--HHDEVNSLSFSSDGA----YLLSGGREGVLVLWQLETGK-KQFLPR 290 (792)
T ss_pred ceEEEeccCCcEEEEeccccccccccceEEEe--cccccceeEEecCCc----eEeecccceEEEEEeecCCC-cccccc
Confidence 3467889999999998665 211211222345 889999999999888 89999999999999999887 222222
Q ss_pred cCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeeccc-ccccCCceE-EEEEeecCCceEEEEec
Q 019405 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV-SAESSCSTV-KSWNVCASGTIAFSKVD 171 (341)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~-~~~~~~~~v-~~~~~~~~~~i~~~~~~ 171 (341)
-..++..+.+.+... ......+|..+.+........ .+.+.-... ........+-.+.+.++
T Consensus 291 --------Lgs~I~~i~vS~ds~--------~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~id 354 (792)
T KOG1963|consen 291 --------LGSPILHIVVSPDSD--------LYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSID 354 (792)
T ss_pred --------cCCeeEEEEEcCCCC--------eEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEc
Confidence 236677777776555 777778899888887532211 100000000 00011123346678889
Q ss_pred CCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCc--cCccCCeeeeEEEEEecCCCCEEEEEeC--------C--CeE
Q 019405 172 ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNS--LGIFTPTWFTSAAFLSIDDHRKFVAGTN--------D--HQV 239 (341)
Q Consensus 172 ~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~~~~~--------d--~~i 239 (341)
|..+.++-.+..+.|.+||+-+.+.+..+.....+. -...+...++.++. +..|++++|... | -.+
T Consensus 355 pr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~--~~~gs~maT~E~~~d~~~~~~~e~~L 432 (792)
T KOG1963|consen 355 PRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVAR--SRFGSWMATLEARIDKFNFFDGEVSL 432 (792)
T ss_pred CCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehh--hccceEEEEeeeeehhhhccCceEEE
Confidence 988888889999999999998877766554321111 01122345677776 667888888532 2 257
Q ss_pred EEEEcCCCCc----eeEEEEecCCCeEEEEEcC-CC-ceEEEEeCCCCEEEEECCCC----------eEEeEEeccccCc
Q 019405 240 RLYDTSAQRR----PVMSFDFRETPIKAVAEEP-DS-FNIYIGNGSGDLASVDIRTG----------KLLGCFIGKCSGS 303 (341)
Q Consensus 240 ~iwd~~~~~~----~~~~~~~~~~~v~~~~~~~-~~-~~l~~g~~dg~i~iwd~~~~----------~~~~~~~~~~~~~ 303 (341)
++|-.....+ .......|...+...++.+ .. ..+++++.||.++||-+... .+...-..| ..+
T Consensus 433 KFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~-k~~ 511 (792)
T KOG1963|consen 433 KFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYH-KTP 511 (792)
T ss_pred EEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccc-cCc
Confidence 8887665332 1222345777666666543 33 37889999999999987322 121111123 789
Q ss_pred eeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405 304 IRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (341)
Q Consensus 304 i~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 332 (341)
+++++|+.||..| +.+.|+.|.+||..+
T Consensus 512 i~a~~fs~dGsll-a~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 512 ITALCFSQDGSLL-AVSFDDTITIWDYDT 539 (792)
T ss_pred ccchhhcCCCcEE-EEecCCEEEEecCCC
Confidence 9999999999555 566888999999987
No 204
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.69 E-value=1.5e-13 Score=115.71 Aligned_cols=235 Identities=12% Similarity=0.074 Sum_probs=142.0
Q ss_pred EEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEE-EcccceeEEEEeeecccc
Q 019405 68 LAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLT-CTTKGKASMRSIEVTKVS 146 (341)
Q Consensus 68 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~g~~~i~~~~~~~~~ 146 (341)
+++...++.|++|++.+...+..++.. +..+....+.+.+..+ .|++ +..++.+.+|+++.
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~------~~~~~~~~l~~spd~~--------~lyv~~~~~~~i~~~~~~~---- 66 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVV------DVPGQVQPMVISPDKR--------HLYVGVRPEFRVLSYRIAD---- 66 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEE------ecCCCCccEEECCCCC--------EEEEEECCCCcEEEEEECC----
Confidence 344467899999999643222222221 0112333444433333 4444 45678888898852
Q ss_pred cccCCceEEEEE-eecCCceEEEEecCCCCEEEEeeC-CCeEEEEECCCCc-eeeecCCCCCCccCccCCeeeeEEEEEe
Q 019405 147 AESSCSTVKSWN-VCASGTIAFSKVDISEKFSLFGGK-GVEVNVWDLDKCE-KIWTAKPPPKNSLGIFTPTWFTSAAFLS 223 (341)
Q Consensus 147 ~~~~~~~v~~~~-~~~~~~i~~~~~~~~~~~l~~~~~-d~~v~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 223 (341)
++.+.... ....+....+.++|+++++++++. ++.|.+|++++.. ......... ......++++
T Consensus 67 ----~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-------~~~~~~~~~~-- 133 (330)
T PRK11028 67 ----DGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-------GLEGCHSANI-- 133 (330)
T ss_pred ----CCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-------CCCcccEeEe--
Confidence 11222111 122345678999999998887764 7899999996422 111111000 0122566778
Q ss_pred cCCCCEEEEE-eCCCeEEEEEcCCCCcee----EEEE-ecCCCeEEEEEcCCCceEEEEeC-CCCEEEEECCC--C--eE
Q 019405 224 IDDHRKFVAG-TNDHQVRLYDTSAQRRPV----MSFD-FRETPIKAVAEEPDSFNIYIGNG-SGDLASVDIRT--G--KL 292 (341)
Q Consensus 224 ~~~~~~l~~~-~~d~~i~iwd~~~~~~~~----~~~~-~~~~~v~~~~~~~~~~~l~~g~~-dg~i~iwd~~~--~--~~ 292 (341)
+|++++++++ ..++.|.+||+.+..... .... ........++|+|++++++++.. ++.|.+|++.. + +.
T Consensus 134 ~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~ 213 (330)
T PRK11028 134 DPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIEC 213 (330)
T ss_pred CCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEE
Confidence 8899888654 456999999998633211 0111 11234568999999999988876 89999999973 3 33
Q ss_pred EeEEecc-----ccCceeEEEecCCCCEEEEEeC-CCcEEEEEcCCC
Q 019405 293 LGCFIGK-----CSGSIRSIARHPTLPIIASCGL-DSYLRFWDIKTR 333 (341)
Q Consensus 293 ~~~~~~~-----~~~~i~~~~~~~~~~~l~s~~~-dg~v~iwd~~~~ 333 (341)
+..+... .......+.++|++++|+++.. ++.|.+|++.+.
T Consensus 214 ~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~ 260 (330)
T PRK11028 214 VQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSED 260 (330)
T ss_pred EEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCC
Confidence 4443321 0112336889999998888854 789999998643
No 205
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=6.2e-15 Score=123.45 Aligned_cols=243 Identities=15% Similarity=0.125 Sum_probs=163.4
Q ss_pred ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeec-
Q 019405 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN- 93 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~- 93 (341)
..+.+|+.||++++|++... .++.++ ..+..|.+++|++...-. .||++- ...+.|-+..-|..+.....
T Consensus 413 ~wlasGsdDGtvriWEi~Tg-----Rcvr~~-~~d~~I~~vaw~P~~~~~--vLAvA~-~~~~~ivnp~~G~~~e~~~t~ 483 (733)
T KOG0650|consen 413 EWLASGSDDGTVRIWEIATG-----RCVRTV-QFDSEIRSVAWNPLSDLC--VLAVAV-GECVLIVNPIFGDRLEVGPTK 483 (733)
T ss_pred ceeeecCCCCcEEEEEeecc-----eEEEEE-eecceeEEEEecCCCCce--eEEEEe-cCceEEeCccccchhhhcchh
Confidence 45788999999999999987 666666 456789999999877632 455555 44477777654522211100
Q ss_pred -----c----CCC----CCC---------------CCCCceeeEeeeeccccccccccceeEEEccc---ceeEEEEeee
Q 019405 94 -----A----GDS----GAQ---------------PEDDGIVGLHLFKRQREESSSRSRTLLTCTTK---GKASMRSIEV 142 (341)
Q Consensus 94 -----~----~~~----~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~~i~~~~~ 142 (341)
. .+. ..+ .+.+.+..+.|...+. +|++...+ ..+.|..+..
T Consensus 484 ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGD--------YlatV~~~~~~~~VliHQLSK 555 (733)
T KOG0650|consen 484 ELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGD--------YLATVMPDSGNKSVLIHQLSK 555 (733)
T ss_pred hhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCc--------eEEEeccCCCcceEEEEeccc
Confidence 0 000 000 1334455566655555 67666553 4556666654
Q ss_pred ccccc----------------------ccCCceEEEEEeecC----------CceEEEEecCCCCEEEEeeCCCeEEEEE
Q 019405 143 TKVSA----------------------ESSCSTVKSWNVCAS----------GTIAFSKVDISEKFSLFGGKGVEVNVWD 190 (341)
Q Consensus 143 ~~~~~----------------------~~~~~~v~~~~~~~~----------~~i~~~~~~~~~~~l~~~~~d~~v~i~d 190 (341)
...-. .+....|++|++... ..|..++++|.|..|+.++.|+.+..||
T Consensus 556 ~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfD 635 (733)
T KOG0650|consen 556 RKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFD 635 (733)
T ss_pred ccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEE
Confidence 32210 113334556655332 3577889999999999999999999999
Q ss_pred CCCC-ceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCC--------CceeEEEEecCCC-
Q 019405 191 LDKC-EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ--------RRPVMSFDFRETP- 260 (341)
Q Consensus 191 ~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--------~~~~~~~~~~~~~- 260 (341)
+.-. ++.+.+..|. ..+++++| ++.-.++++|+.||++.||--.-. -.|++.+.+|...
T Consensus 636 ldlsskPyk~lr~H~---------~avr~Va~--H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~ 704 (733)
T KOG0650|consen 636 LDLSSKPYKTLRLHE---------KAVRSVAF--HKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTN 704 (733)
T ss_pred cccCcchhHHhhhhh---------hhhhhhhh--ccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeec
Confidence 8743 4455555543 66999999 778899999999999998853211 1367788888655
Q ss_pred ---eEEEEEcCCCceEEEEeCCCCEEEE
Q 019405 261 ---IKAVAEEPDSFNIYIGNGSGDLASV 285 (341)
Q Consensus 261 ---v~~~~~~~~~~~l~~g~~dg~i~iw 285 (341)
|..+.|+|...+|++++.||+|++|
T Consensus 705 ~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 705 DLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ccceEeecccCCCceEEecCCCceEEee
Confidence 8889999999999999999999998
No 206
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=2.1e-14 Score=113.38 Aligned_cols=237 Identities=13% Similarity=0.115 Sum_probs=157.6
Q ss_pred eEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccc
Q 019405 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS 146 (341)
Q Consensus 67 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~ 146 (341)
.+|++..|..|++|+-.. ++...++. .....+.|++|-+.... .++.+.. +-+.||..+.....
T Consensus 112 ~fava~nddvVriy~kss-t~pt~Lks-------~sQrnvtclawRPlsas-------elavgCr-~gIciW~~s~tln~ 175 (445)
T KOG2139|consen 112 AFAVATNDDVVRIYDKSS-TCPTKLKS-------VSQRNVTCLAWRPLSAS-------ELAVGCR-AGICIWSDSRTLNA 175 (445)
T ss_pred hhhhhccCcEEEEeccCC-CCCceecc-------hhhcceeEEEeccCCcc-------eeeeeec-ceeEEEEcCccccc
Confidence 488899999999999865 55555554 35578999999877663 5555554 55889987654432
Q ss_pred c----ccCCceEEEEEeecCCceEEEEecCCCCEEEEeeC-CCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEE
Q 019405 147 A----ESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK-GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAF 221 (341)
Q Consensus 147 ~----~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 221 (341)
. ........+.......+|++++|++||..+++++. |..|.|||..++..+.-.... .+.+.-+.|
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~g---------lgg~slLkw 246 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKG---------LGGFSLLKW 246 (445)
T ss_pred ccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccC---------CCceeeEEE
Confidence 1 11223334444444568999999999999998775 568999999988765433221 144788999
Q ss_pred EecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCC----C-------
Q 019405 222 LSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT----G------- 290 (341)
Q Consensus 222 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~----~------- 290 (341)
+|++.+|..+.-|+..++|+........+ .....+.|...+|+|+|+.|+-.+. |.-++|.+.- .
T Consensus 247 --SPdgd~lfaAt~davfrlw~e~q~wt~er-w~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~ 322 (445)
T KOG2139|consen 247 --SPDGDVLFAATCDAVFRLWQENQSWTKER-WILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQS 322 (445)
T ss_pred --cCCCCEEEEecccceeeeehhcccceecc-eeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCccc
Confidence 99999999999999999996554332122 2223458999999999977654432 2333443321 0
Q ss_pred ----eEEeEEe------c--cccCceeEEEecCCCCEEEEEeCCC--------cEEEEEcCC
Q 019405 291 ----KLLGCFI------G--KCSGSIRSIARHPTLPIIASCGLDS--------YLRFWDIKT 332 (341)
Q Consensus 291 ----~~~~~~~------~--~~~~~i~~~~~~~~~~~l~s~~~dg--------~v~iwd~~~ 332 (341)
.++..+. + -..+++.+++|.|.|.+||..-..+ .|.+||.+.
T Consensus 323 ~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~ 384 (445)
T KOG2139|consen 323 IKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRK 384 (445)
T ss_pred ceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccc
Confidence 0111111 0 0146789999999999999875444 356676654
No 207
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.68 E-value=1.2e-13 Score=116.38 Aligned_cols=293 Identities=13% Similarity=0.083 Sum_probs=168.8
Q ss_pred eeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEc-cCCeEEEeeCCCCcchheeecc
Q 019405 16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR-KNGLTDILNPLNGDLRVAISNA 94 (341)
Q Consensus 16 ~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~ 94 (341)
.++..+.||.+.++++.+. +++.+...... ...+++|+|++ +++++. .++.+.|+|.++.+.++.+...
T Consensus 50 ~~yv~~rdg~vsviD~~~~-----~~v~~i~~G~~-~~~i~~s~DG~----~~~v~n~~~~~v~v~D~~tle~v~~I~~~ 119 (369)
T PF02239_consen 50 YLYVANRDGTVSVIDLATG-----KVVATIKVGGN-PRGIAVSPDGK----YVYVANYEPGTVSVIDAETLEPVKTIPTG 119 (369)
T ss_dssp EEEEEETTSEEEEEETTSS-----SEEEEEE-SSE-EEEEEE--TTT----EEEEEEEETTEEEEEETTT--EEEEEE--
T ss_pred EEEEEcCCCeEEEEECCcc-----cEEEEEecCCC-cceEEEcCCCC----EEEEEecCCCceeEeccccccceeecccc
Confidence 3556677899999999887 66666644333 34577776666 887765 6899999999999988887652
Q ss_pred CCCCCCCCCCceeeEeeeeccccccccccceeEEEc-ccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCC
Q 019405 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT-TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS 173 (341)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~ 173 (341)
..... ....++..+...+... .++..- +.+.+.+.+.... ..+..-............|+|+
T Consensus 120 ~~~~~-~~~~Rv~aIv~s~~~~--------~fVv~lkd~~~I~vVdy~d~--------~~~~~~~i~~g~~~~D~~~dpd 182 (369)
T PF02239_consen 120 GMPVD-GPESRVAAIVASPGRP--------EFVVNLKDTGEIWVVDYSDP--------KNLKVTTIKVGRFPHDGGFDPD 182 (369)
T ss_dssp EE-TT-TS---EEEEEE-SSSS--------EEEEEETTTTEEEEEETTTS--------SCEEEEEEE--TTEEEEEE-TT
T ss_pred ccccc-ccCCCceeEEecCCCC--------EEEEEEccCCeEEEEEeccc--------cccceeeecccccccccccCcc
Confidence 11100 0123344444433333 444443 3466655553321 1333333344566778899999
Q ss_pred CCEEEEe-eCCCeEEEEECCCCceeeecCCCCCCc----cCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCC
Q 019405 174 EKFSLFG-GKGVEVNVWDLDKCEKIWTAKPPPKNS----LGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR 248 (341)
Q Consensus 174 ~~~l~~~-~~d~~v~i~d~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 248 (341)
+++++.+ ..++.|-++|.++++....+....... ..+.|+.. ...|.....+...++.-....+.+||....+
T Consensus 183 gry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~--g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wk 260 (369)
T PF02239_consen 183 GRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGF--GPVWATSGLGYFAIPLIGTDPVSVHDDYAWK 260 (369)
T ss_dssp SSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTT--EEEEEEEBSSSSEEEEEE--TTT-STTTBTS
T ss_pred cceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCc--ceEEeeccccceecccccCCccccchhhcCe
Confidence 9987664 556799999999988776654422110 01111110 1112101123333333333456678888766
Q ss_pred ceeEEEEecCCCeEEEEEcCCCceEEEE----eCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCC-
Q 019405 249 RPVMSFDFRETPIKAVAEEPDSFNIYIG----NGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDS- 323 (341)
Q Consensus 249 ~~~~~~~~~~~~v~~~~~~~~~~~l~~g----~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg- 323 (341)
. ++.+.....+ ..+..+|+++++.+. ...+.|.++|.++.+.+..+.......+..+.|+++|+.+..+..++
T Consensus 261 v-v~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~ 338 (369)
T PF02239_consen 261 V-VKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGN 338 (369)
T ss_dssp E-EEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--T
T ss_pred E-EEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCC
Confidence 4 8888876666 788899999999988 44588999999999888877643234699999999999766555443
Q ss_pred -cEEEEEcCCCceeeee
Q 019405 324 -YLRFWDIKTRQLLSAV 339 (341)
Q Consensus 324 -~v~iwd~~~~~~~~~~ 339 (341)
.|.+||.++.+.+.++
T Consensus 339 ~~i~v~D~~Tl~~~~~i 355 (369)
T PF02239_consen 339 GAIVVYDAKTLKEKKRI 355 (369)
T ss_dssp TEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCcEEEEEE
Confidence 6999999999998876
No 208
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=5.4e-15 Score=117.71 Aligned_cols=208 Identities=12% Similarity=0.063 Sum_probs=153.9
Q ss_pred eEEEEccCCeEEEeeCCCCcc----hheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEccc--ceeEEEEe
Q 019405 67 LLAVARKNGLTDILNPLNGDL----RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK--GKASMRSI 140 (341)
Q Consensus 67 ~l~~~~~dg~i~iw~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~i~~~ 140 (341)
.|+++..+|.+.+|..+.+.. +..+..+ .++..+.-.+... ..+++|+.. ..+.||++
T Consensus 117 ~Litc~~sG~l~~~~~k~~d~hss~l~~la~g---------~g~~~~r~~~~~p-------~Iva~GGke~~n~lkiwdl 180 (412)
T KOG3881|consen 117 TLITCVSSGNLQVRHDKSGDLHSSKLIKLATG---------PGLYDVRQTDTDP-------YIVATGGKENINELKIWDL 180 (412)
T ss_pred EEEEEecCCcEEEEeccCCccccccceeeecC---------CceeeeccCCCCC-------ceEecCchhcccceeeeec
Confidence 588889999999999885432 2222221 2233333333322 156668888 88999998
Q ss_pred eecccccccCCceEEEEEeecC----------CceEEEEecCC--CCEEEEeeCCCeEEEEECCCC-ceeeecCCCCCCc
Q 019405 141 EVTKVSAESSCSTVKSWNVCAS----------GTIAFSKVDIS--EKFSLFGGKGVEVNVWDLDKC-EKIWTAKPPPKNS 207 (341)
Q Consensus 141 ~~~~~~~~~~~~~v~~~~~~~~----------~~i~~~~~~~~--~~~l~~~~~d~~v~i~d~~~~-~~~~~~~~~~~~~ 207 (341)
+.. ..+|....- -.++.+.|-+. ...|++++.-++|++||.+.+ +++..+....
T Consensus 181 e~~----------~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E--- 247 (412)
T KOG3881|consen 181 EQS----------KQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLE--- 247 (412)
T ss_pred ccc----------eeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEecccc---
Confidence 654 345544321 13456777776 788999999999999999854 4555555433
Q ss_pred cCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEEC
Q 019405 208 LGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDI 287 (341)
Q Consensus 208 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~ 287 (341)
..++++.. .|+++++++|..-+.+..||++.++.+...+.+-.+.|+++..+|..+++++++-|..|+|+|+
T Consensus 248 ------~~is~~~l--~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ 319 (412)
T KOG3881|consen 248 ------NPISSTGL--TPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDI 319 (412)
T ss_pred ------Ccceeeee--cCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeec
Confidence 55888888 7899999999999999999999987656668888899999999999999999999999999999
Q ss_pred CCCeEEeEEeccccCceeEEEecCCC
Q 019405 288 RTGKLLGCFIGKCSGSIRSIARHPTL 313 (341)
Q Consensus 288 ~~~~~~~~~~~~~~~~i~~~~~~~~~ 313 (341)
++.+++..... ...++++.+.++-
T Consensus 320 ktrkll~kvYv--Ks~lt~il~~~~~ 343 (412)
T KOG3881|consen 320 KTRKLLHKVYV--KSRLTFILLRDDV 343 (412)
T ss_pred ccchhhhhhhh--hccccEEEecCCc
Confidence 99877765543 4567777776543
No 209
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.67 E-value=4.3e-15 Score=115.32 Aligned_cols=206 Identities=11% Similarity=0.058 Sum_probs=156.5
Q ss_pred CceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCC
Q 019405 104 DGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKG 183 (341)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 183 (341)
.+|.|.+|.+... .++.+..++.+.|+....... -...+... .|...|+.++|+|..+.|++|+.|
T Consensus 11 ~pitchAwn~drt--------~iAv~~~~~evhiy~~~~~~~-----w~~~htls-~Hd~~vtgvdWap~snrIvtcs~d 76 (361)
T KOG1523|consen 11 EPITCHAWNSDRT--------QIAVSPNNHEVHIYSMLGADL-----WEPAHTLS-EHDKIVTGVDWAPKSNRIVTCSHD 76 (361)
T ss_pred CceeeeeecCCCc--------eEEeccCCceEEEEEecCCCC-----ceeceehh-hhCcceeEEeecCCCCceeEccCC
Confidence 6788888877666 889999999999998764331 12333333 356789999999999999999999
Q ss_pred CeEEEEECCC-CceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCce---eEEEEecCC
Q 019405 184 VEVNVWDLDK-CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP---VMSFDFRET 259 (341)
Q Consensus 184 ~~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~ 259 (341)
..-++|.... ++-...+.. +++....+++.| +|.++.|++|+.-+.|.||-++..+.- .+.-+.+.+
T Consensus 77 rnayVw~~~~~~~WkptlvL-------lRiNrAAt~V~W--sP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirS 147 (361)
T KOG1523|consen 77 RNAYVWTQPSGGTWKPTLVL-------LRINRAATCVKW--SPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRS 147 (361)
T ss_pred CCccccccCCCCeeccceeE-------EEeccceeeEee--cCcCceEEeccCccEEEEEEEecccceehhhhhCCcccc
Confidence 9999999843 221111111 112355899999 899999999999999999988764320 122344667
Q ss_pred CeEEEEEcCCCceEEEEeCCCCEEEEECC------------------CCeEEeEEeccccCceeEEEecCCCCEEEEEeC
Q 019405 260 PIKAVAEEPDSFNIYIGNGSGDLASVDIR------------------TGKLLGCFIGKCSGSIRSIARHPTLPIIASCGL 321 (341)
Q Consensus 260 ~v~~~~~~~~~~~l~~g~~dg~i~iwd~~------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 321 (341)
.|+++.|+|++-+|++|+.|+..++|..- -|+++.++... .+.|..+.|+|+|..|+-.+.
T Consensus 148 tv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~-ggwvh~v~fs~sG~~lawv~H 226 (361)
T KOG1523|consen 148 TVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSS-GGWVHGVLFSPSGNRLAWVGH 226 (361)
T ss_pred ceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccC-CCceeeeEeCCCCCEeeEecC
Confidence 89999999999999999999999999642 12344445333 689999999999999999999
Q ss_pred CCcEEEEEcCCC
Q 019405 322 DSYLRFWDIKTR 333 (341)
Q Consensus 322 dg~v~iwd~~~~ 333 (341)
|+.+.+=|....
T Consensus 227 ds~v~~~da~~p 238 (361)
T KOG1523|consen 227 DSTVSFVDAAGP 238 (361)
T ss_pred CCceEEeecCCC
Confidence 999999887654
No 210
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.66 E-value=2e-16 Score=128.33 Aligned_cols=191 Identities=19% Similarity=0.213 Sum_probs=160.2
Q ss_pred eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCC
Q 019405 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP 204 (341)
Q Consensus 125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~ 204 (341)
.++.++..|.+..+|.....+ . +.+.-...|..+.|-.+.+++|++ ....++|||- .|..+..+..+
T Consensus 143 hlllgGrKGHlAa~Dw~t~~L--------~--~Ei~v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~-~GtElHClk~~- 209 (545)
T KOG1272|consen 143 HLLLGGRKGHLAAFDWVTKKL--------H--FEINVMETVRDVTFLHNEQFFAVA-QKKYVYVYDN-NGTELHCLKRH- 209 (545)
T ss_pred EEEecCCccceeeeeccccee--------e--eeeehhhhhhhhhhhcchHHHHhh-hhceEEEecC-CCcEEeehhhc-
Confidence 888888889998888765442 2 222234567888888888887765 5568999995 57777776654
Q ss_pred CCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEE
Q 019405 205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLAS 284 (341)
Q Consensus 205 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~i 284 (341)
..|..+.| -|..-+|++++..|.++.-|+.+++. +..+....+.+..++-+|-+..+-+|...|+|.+
T Consensus 210 ---------~~v~rLeF--LPyHfLL~~~~~~G~L~Y~DVS~Gkl-Va~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSl 277 (545)
T KOG1272|consen 210 ---------IRVARLEF--LPYHFLLVAASEAGFLKYQDVSTGKL-VASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSL 277 (545)
T ss_pred ---------Cchhhhcc--cchhheeeecccCCceEEEeechhhh-hHHHHccCCccchhhcCCccceEEEcCCCceEEe
Confidence 44888899 57788999999999999999999885 8888878888999999999989999999999999
Q ss_pred EECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeeecC
Q 019405 285 VDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVCS 341 (341)
Q Consensus 285 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~s 341 (341)
|.....+++..+..| .++|.++++.++|++++|++.|..++|||++....+.++++
T Consensus 278 WSP~skePLvKiLcH-~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t 333 (545)
T KOG1272|consen 278 WSPNSKEPLVKILCH-RGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT 333 (545)
T ss_pred cCCCCcchHHHHHhc-CCCcceEEECCCCcEEeecccccceeEeeeccccccceeec
Confidence 999999999999888 99999999999999999999999999999999888877764
No 211
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=2.3e-15 Score=124.86 Aligned_cols=234 Identities=13% Similarity=0.104 Sum_probs=162.5
Q ss_pred eeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccc
Q 019405 43 ERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSR 122 (341)
Q Consensus 43 ~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (341)
..+.+|++.|+++.|+.++. +|++|+.|-.+.|||+-..+.+..+.. +|...|-+..+.+...+.
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~----lL~SGSDD~r~ivWd~~~~KllhsI~T-------gHtaNIFsvKFvP~tnnr---- 108 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGE----LLASGSDDTRLIVWDPFEYKLLHSIST-------GHTANIFSVKFVPYTNNR---- 108 (758)
T ss_pred hhhccccceecceeecCCCC----EEeecCCcceEEeecchhcceeeeeec-------ccccceeEEeeeccCCCe----
Confidence 34678999999999888777 999999999999999988888887775 577889899998876643
Q ss_pred cceeEEEcccceeEEEEeeeccccc--ccCCceEEEEEeecCCceEEEEecCCC-CEEEEeeCCCeEEEEECCCCceeee
Q 019405 123 SRTLLTCTTKGKASMRSIEVTKVSA--ESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWT 199 (341)
Q Consensus 123 ~~~l~~~~~~g~~~i~~~~~~~~~~--~~~~~~v~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~ 199 (341)
.+++|..|..|+++++...+... -....+.+.|.- |...|..++..|++ +.+.+++.||+|+.||++.......
T Consensus 109 --iv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~c-ht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p 185 (758)
T KOG1310|consen 109 --IVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSC-HTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNP 185 (758)
T ss_pred --EEEeccCcceEEEEecccccccccccCccchhhhhhh-hhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCc
Confidence 89999999999999997644321 112234555653 56678888888887 7899999999999999986321110
Q ss_pred cCCCCCCccC-ccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCc-----------------eeEEEEe-cC--
Q 019405 200 AKPPPKNSLG-IFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR-----------------PVMSFDF-RE-- 258 (341)
Q Consensus 200 ~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-----------------~~~~~~~-~~-- 258 (341)
-......... ...--...|+... +.+..+|++|+.|-..++||.+.... .++.+.. |-
T Consensus 186 ~~~~~~~l~ny~~~lielk~ltis-p~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn 264 (758)
T KOG1310|consen 186 DEDCPSILVNYNPQLIELKCLTIS-PSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKN 264 (758)
T ss_pred cccccHHHHHhchhhheeeeeeec-CCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccC
Confidence 0000000000 0001235677774 23567899999999999999543110 1222211 11
Q ss_pred ---------CCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeE
Q 019405 259 ---------TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGC 295 (341)
Q Consensus 259 ---------~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~ 295 (341)
..++-+.|+|+|..|++.-....|+++|+..++....
T Consensus 265 ~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~ 310 (758)
T KOG1310|consen 265 SQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTP 310 (758)
T ss_pred cccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCcee
Confidence 1256688999998888877777899999987765443
No 212
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.65 E-value=6e-13 Score=103.53 Aligned_cols=226 Identities=13% Similarity=0.088 Sum_probs=149.3
Q ss_pred CeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceE
Q 019405 75 GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTV 154 (341)
Q Consensus 75 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v 154 (341)
++|.|||=...+++.++... .+|..+.+-.. .+++ -..+.+.+|.....+ +.+
T Consensus 75 NkviIWDD~k~~~i~el~f~---------~~I~~V~l~r~----------riVv-vl~~~I~VytF~~n~-------k~l 127 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFN---------SEIKAVKLRRD----------RIVV-VLENKIYVYTFPDNP-------KLL 127 (346)
T ss_pred ceEEEEecccCcEEEEEEec---------cceeeEEEcCC----------eEEE-EecCeEEEEEcCCCh-------hhe
Confidence 57999996666677666653 45555554221 3333 346788888765333 255
Q ss_pred EEEEeec-CCceEEEEecCCCCEEEE-eeCCCeEEEEECCCCcee--eecCCCCCCccCccCCeeeeEEEEEecCCCCEE
Q 019405 155 KSWNVCA-SGTIAFSKVDISEKFSLF-GGKGVEVNVWDLDKCEKI--WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF 230 (341)
Q Consensus 155 ~~~~~~~-~~~i~~~~~~~~~~~l~~-~~~d~~v~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 230 (341)
+.++... +..+.++.-..+..+||. |-.-|.|.|-|+...+.- ..+.. |...|.|++. +-+|.++
T Consensus 128 ~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~A---------H~s~Iacv~L--n~~Gt~v 196 (346)
T KOG2111|consen 128 HVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINA---------HDSDIACVAL--NLQGTLV 196 (346)
T ss_pred eeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEc---------ccCceeEEEE--cCCccEE
Confidence 5655543 344555544445555554 455689999998754431 22333 4577999999 8899999
Q ss_pred EEEeCCCe-EEEEEcCCCCceeEEEEec--CCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCe---E------------
Q 019405 231 VAGTNDHQ-VRLYDTSAQRRPVMSFDFR--ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK---L------------ 292 (341)
Q Consensus 231 ~~~~~d~~-i~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~---~------------ 292 (341)
|+++..|+ |||||..++.. +..++.. ...|.+++|||+..+|++++..|++.||.++... .
T Consensus 197 ATaStkGTLIRIFdt~~g~~-l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~l 275 (346)
T KOG2111|consen 197 ATASTKGTLIRIFDTEDGTL-LQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVL 275 (346)
T ss_pred EEeccCcEEEEEEEcCCCcE-eeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCCCcccccccccccccc
Confidence 99999997 79999999875 7777643 3579999999999999999999999999886422 1
Q ss_pred ---------EeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEE--Ec-CCCceeeeec
Q 019405 293 ---------LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFW--DI-KTRQLLSAVC 340 (341)
Q Consensus 293 ---------~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iw--d~-~~~~~~~~~~ 340 (341)
+..+.-. .++..-++|-.+.+.++..+.||.-+-+ +. +.|++.+..|
T Consensus 276 pky~~S~wS~~~f~l~-~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f~~~~~g~~~~~~~ 334 (346)
T KOG2111|consen 276 PKYFSSEWSFAKFQLP-QGTQCIIAFGSETNTVIAICADGSYYKFKFDPKNGGESSRHEY 334 (346)
T ss_pred chhcccceeEEEEEcc-CCCcEEEEecCCCCeEEEEEeCCcEEEEEeccccccchhhhhh
Confidence 1112222 4455667777775667777788866433 33 3455554443
No 213
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.65 E-value=1.3e-13 Score=107.32 Aligned_cols=230 Identities=10% Similarity=0.028 Sum_probs=155.0
Q ss_pred CCceeeeecCCCCe----------EEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeC
Q 019405 13 PPLRALTFDSLGLI----------KVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNP 82 (341)
Q Consensus 13 ~~~~~~~~~~~g~i----------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~ 82 (341)
.++.+-+.++|++. .+++.... +.|+..+++.+|+..++.+.+++... .|++++.|..-+||..
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~--~~w~~~htls~Hd~~vtgvdWap~sn----rIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGA--DLWEPAHTLSEHDKIVTGVDWAPKSN----RIVTCSHDRNAYVWTQ 84 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecCC--CCceeceehhhhCcceeEEeecCCCC----ceeEccCCCCcccccc
Confidence 34555566666555 34443333 55888899999999999888776554 7999999999999998
Q ss_pred -CCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeec
Q 019405 83 -LNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA 161 (341)
Q Consensus 83 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~ 161 (341)
+.++...++... .......++.|.+..+ .+++++....+.||.++..++=- .-+......
T Consensus 85 ~~~~~WkptlvLl------RiNrAAt~V~WsP~en--------kFAVgSgar~isVcy~E~ENdWW-----VsKhikkPi 145 (361)
T KOG1523|consen 85 PSGGTWKPTLVLL------RINRAATCVKWSPKEN--------KFAVGSGARLISVCYYEQENDWW-----VSKHIKKPI 145 (361)
T ss_pred CCCCeeccceeEE------EeccceeeEeecCcCc--------eEEeccCccEEEEEEEeccccee-----hhhhhCCcc
Confidence 555544443321 1346778888888777 89999999999999887544200 000001122
Q ss_pred CCceEEEEecCCCCEEEEeeCCCeEEEEECCCCcee-eecCCCC--CCc-----cCc-cCCeeeeEEEEEecCCCCEEEE
Q 019405 162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI-WTAKPPP--KNS-----LGI-FTPTWFTSAAFLSIDDHRKFVA 232 (341)
Q Consensus 162 ~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~-~~~~~~~--~~~-----~~~-~~~~~v~~~~~~~~~~~~~l~~ 232 (341)
...|.+++|+|++-++++|+.|+..++|..--.... +....+- +.+ .+. ...+++..+.| +|+|+.|+-
T Consensus 146 rStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~f--s~sG~~law 223 (361)
T KOG1523|consen 146 RSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLF--SPSGNRLAW 223 (361)
T ss_pred ccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEe--CCCCCEeeE
Confidence 456899999999999999999999999875211000 0000000 000 011 34589999999 999999999
Q ss_pred EeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCC
Q 019405 233 GTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPD 269 (341)
Q Consensus 233 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 269 (341)
.+.|.++.+-|.....+.+.......-+..++.|-.+
T Consensus 224 v~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise 260 (361)
T KOG1523|consen 224 VGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISE 260 (361)
T ss_pred ecCCCceEEeecCCCchhccchhhccCCceeeEeecC
Confidence 9999999999987754334444444467777777544
No 214
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=6.6e-14 Score=116.92 Aligned_cols=247 Identities=15% Similarity=0.174 Sum_probs=160.0
Q ss_pred CCCCceeEEEeccCCCCCce-EEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccccccccee
Q 019405 48 PHSSNCVLAASIDDSQNDPL-LAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL 126 (341)
Q Consensus 48 ~~~~~~~~~~s~~~~~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 126 (341)
+....+.+..++|+. | +|+|..--.|++||+.+-. ..+..|. +..++.+..+..+-. ..
T Consensus 50 ~p~ast~ik~s~DGq----Y~lAtG~YKP~ikvydlanLS--LKFERhl-------Dae~V~feiLsDD~S-------K~ 109 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQ----YLLATGTYKPQIKVYDLANLS--LKFERHL-------DAEVVDFEILSDDYS-------KS 109 (703)
T ss_pred CccccceeEecCCCc----EEEEecccCCceEEEEcccce--eeeeecc-------cccceeEEEeccchh-------hh
Confidence 445555566666665 6 6778889999999996532 3344432 133333333333221 22
Q ss_pred EEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCC
Q 019405 127 LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKN 206 (341)
Q Consensus 127 ~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~ 206 (341)
+.-..|..|.+-. ..| +-+.+.-+..-..++++.-..-|+.++....|+-++++.|+.+..+....
T Consensus 110 v~L~~DR~IefHa----------k~G--~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~-- 175 (703)
T KOG2321|consen 110 VFLQNDRTIEFHA----------KYG--RHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDS-- 175 (703)
T ss_pred eEeecCceeeehh----------hcC--eeeeeecCcCCccccccCCCccEEEeecCcceEEEEcccccccccccccc--
Confidence 2222233332221 011 11111112233445554323334444555579999999999988777654
Q ss_pred ccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEe------cC-----CCeEEEEEcCCCceEEE
Q 019405 207 SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF------RE-----TPIKAVAEEPDSFNIYI 275 (341)
Q Consensus 207 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~------~~-----~~v~~~~~~~~~~~l~~ 275 (341)
..++++.. ++.+.+|++|+.+|.|..||.+.... +..+.. |. ..|+++.|+.+|-.+++
T Consensus 176 -------~~lN~v~i--n~~hgLla~Gt~~g~VEfwDpR~ksr-v~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aV 245 (703)
T KOG2321|consen 176 -------GELNVVSI--NEEHGLLACGTEDGVVEFWDPRDKSR-VGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAV 245 (703)
T ss_pred -------ccceeeee--cCccceEEecccCceEEEecchhhhh-heeeecccccCCCccccccCcceEEEecCCceeEEe
Confidence 45888888 78888999999999999999998543 444432 22 24999999999999999
Q ss_pred EeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCC--CEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 276 GNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL--PIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 276 g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
|..+|.+.|||+++.+++..-.....-+|..+.|.+.+ +.+++. ....++|||-.+|+....+
T Consensus 246 Gts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asi 310 (703)
T KOG2321|consen 246 GTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASI 310 (703)
T ss_pred eccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeec
Confidence 99999999999999888754432236689999998863 455554 4458899999999887654
No 215
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=8.9e-14 Score=120.80 Aligned_cols=220 Identities=9% Similarity=0.002 Sum_probs=139.5
Q ss_pred CCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEccc---ceeEEEEeeecccccccC
Q 019405 74 NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK---GKASMRSIEVTKVSAESS 150 (341)
Q Consensus 74 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~~i~~~~~~~~~~~~~ 150 (341)
+..|.+||.+... ...+.. +...+....|.+... .++..+.+ ..+.+|++....
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~--------~~~~v~~p~wSPDG~--------~la~~s~~~~~~~i~i~dl~tg~------ 239 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNR--------SSQPLMSPAWSPDGS--------KLAYVSFENKKSQLVVHDLRSGA------ 239 (429)
T ss_pred eEEEEEECCCCCC-ceEecc--------CCCccccceEcCCCC--------EEEEEEecCCCcEEEEEeCCCCc------
Confidence 4689999986433 333333 234556666666554 56655433 468888875332
Q ss_pred CceEEEEEeecCCceEEEEecCCCCEEEEee-CCCeEEE--EECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCC
Q 019405 151 CSTVKSWNVCASGTIAFSKVDISEKFSLFGG-KGVEVNV--WDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH 227 (341)
Q Consensus 151 ~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~v~i--~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 227 (341)
.+... ...+....++|+|||+.|+.++ .+|.+.| ||+.+++. ..+..+. ..+....| +|++
T Consensus 240 ---~~~l~-~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~---------~~~~~~~w--SpDG 303 (429)
T PRK01742 240 ---RKVVA-SFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGA---------GNNTEPSW--SPDG 303 (429)
T ss_pred ---eEEEe-cCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCC---------CCcCCEEE--CCCC
Confidence 11111 1122344689999999888764 5776555 56655543 3333221 23667889 8999
Q ss_pred CEEEEEe-CCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeE
Q 019405 228 RKFVAGT-NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRS 306 (341)
Q Consensus 228 ~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~ 306 (341)
+.|+..+ .++...||++.........+ .+.. ....|+|+|++|+..+.+ .+.+||+.+++........ ....
T Consensus 304 ~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~-~i~~~Dl~~g~~~~lt~~~---~~~~ 376 (429)
T PRK01742 304 QSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGD-NVVKQDLTSGSTEVLSSTF---LDES 376 (429)
T ss_pred CEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCC-CEEEEECCCCCeEEecCCC---CCCC
Confidence 9877655 57888888875432223333 3333 457899999999887775 4666999988764322222 2356
Q ss_pred EEecCCCCEEEEEeCCCcEEEEEc--CCCceeeee
Q 019405 307 IARHPTLPIIASCGLDSYLRFWDI--KTRQLLSAV 339 (341)
Q Consensus 307 ~~~~~~~~~l~s~~~dg~v~iwd~--~~~~~~~~~ 339 (341)
+.|+|+|++|+.++.++.+.+|++ .+|+.+.++
T Consensus 377 ~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l 411 (429)
T PRK01742 377 PSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARL 411 (429)
T ss_pred ceECCCCCEEEEEEcCCCceEEEEEECCCCceEEc
Confidence 889999999999999998888875 356666655
No 216
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.63 E-value=6.5e-15 Score=121.84 Aligned_cols=161 Identities=20% Similarity=0.255 Sum_probs=123.3
Q ss_pred cCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCC---
Q 019405 171 DISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ--- 247 (341)
Q Consensus 171 ~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--- 247 (341)
.+.+--++.|-.-|.|.+.|....+..+.+.... ......++|+.|.| .+...++.+-.+|.+++||....
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r-----~i~ktsvT~ikWvp-g~~~~Fl~a~~sGnlyly~~~~~~~~ 255 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEER-----LINKSSVTCIKWVP-GSDSLFLVAHASGNLYLYDKEIVCGA 255 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHHHHhhhhcc-----cccccceEEEEEEe-CCCceEEEEEecCceEEeeccccccC
Confidence 3456667888888999998876632222122111 01226699999974 45567777788999999975320
Q ss_pred ------------------------CceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCc
Q 019405 248 ------------------------RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGS 303 (341)
Q Consensus 248 ------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~ 303 (341)
..|+..+...+..|...+|+|||++||+.+.||.++|||..+.+++..++.. -+.
T Consensus 256 t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSY-FGG 334 (636)
T KOG2394|consen 256 TAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSY-FGG 334 (636)
T ss_pred CCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhh-ccc
Confidence 0133334444568899999999999999999999999999998888888877 788
Q ss_pred eeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeee
Q 019405 304 IRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSA 338 (341)
Q Consensus 304 i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 338 (341)
..|++|+|||++|++|++|--|.||.+..++.+.+
T Consensus 335 LLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVAR 369 (636)
T KOG2394|consen 335 LLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVAR 369 (636)
T ss_pred eEEEEEcCCccEEEecCCcceEEEEEeccceEEEe
Confidence 99999999999999999999999999999888764
No 217
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.63 E-value=2.2e-14 Score=112.53 Aligned_cols=271 Identities=12% Similarity=0.095 Sum_probs=175.2
Q ss_pred CCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCc-----chheeeccCCCC----CCCCCCceeeEeeeeccccccc
Q 019405 50 SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD-----LRVAISNAGDSG----AQPEDDGIVGLHLFKRQREESS 120 (341)
Q Consensus 50 ~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 120 (341)
.-+.++.|...+. +||+|+.+|.|.++.-+... ....++.|.+.- .-..+..+..+.|++..+.
T Consensus 26 diis~vef~~~Ge----~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~--- 98 (433)
T KOG1354|consen 26 DIISAVEFDHYGE----RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNL--- 98 (433)
T ss_pred cceeeEEeecccc----eEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCc---
Confidence 3445566665555 99999999999999765322 222333332211 0112456677788877653
Q ss_pred cccceeEEEcccceeEEEEeeeccccc---------------------------ccCCceEEEEEeecCCceEEEEecCC
Q 019405 121 SRSRTLLTCTTKGKASMRSIEVTKVSA---------------------------ESSCSTVKSWNVCASGTIAFSKVDIS 173 (341)
Q Consensus 121 ~~~~~l~~~~~~g~~~i~~~~~~~~~~---------------------------~~~~~~v~~~~~~~~~~i~~~~~~~~ 173 (341)
..++..+.|.++++|.+....... .....+.+++...|.-.|.++.++.|
T Consensus 99 ---a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD 175 (433)
T KOG1354|consen 99 ---AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSD 175 (433)
T ss_pred ---cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCc
Confidence 278888899999999986543210 00112334455555567899999999
Q ss_pred CCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCce---
Q 019405 174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP--- 250 (341)
Q Consensus 174 ~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--- 250 (341)
.+.++++ .|-.|.+|+++--.....+..-++..+.. -..-|++..|+| ...+.++-.+..|+|++-|++....+
T Consensus 176 ~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEe-LteVITsaEFhp-~~cn~f~YSSSKGtIrLcDmR~~aLCd~h 252 (433)
T KOG1354|consen 176 KETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEE-LTEVITSAEFHP-HHCNVFVYSSSKGTIRLCDMRQSALCDAH 252 (433)
T ss_pred cceEeec-cceeeeeccccccCCceeEEEccccCHHH-HHHHHhhhccCH-hHccEEEEecCCCcEEEeechhhhhhcch
Confidence 9988874 56689999997543333322221111100 013378888953 24467777788999999999953211
Q ss_pred eEEEE------------ecCCCeEEEEEcCCCceEEEEeCCCCEEEEEC-CCCeEEeEEeccc-----------cCce--
Q 019405 251 VMSFD------------FRETPIKAVAEEPDSFNIYIGNGSGDLASVDI-RTGKLLGCFIGKC-----------SGSI-- 304 (341)
Q Consensus 251 ~~~~~------------~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~-~~~~~~~~~~~~~-----------~~~i-- 304 (341)
.+.+. .--..|..+.|+++|+++++-.. -+|++||+ ...+++.+++.|. .+.|
T Consensus 253 sKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~Ifd 331 (433)
T KOG1354|consen 253 SKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFD 331 (433)
T ss_pred hhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhh
Confidence 01111 11246888999999999988654 58999999 4567777776651 2223
Q ss_pred -eEEEecCCCCEEEEEeCCCcEEEEEcCCCc
Q 019405 305 -RSIARHPTLPIIASCGLDSYLRFWDIKTRQ 334 (341)
Q Consensus 305 -~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 334 (341)
..++|+.++.+++||+....+++|++..|.
T Consensus 332 KFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 332 KFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred eeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 457899999999999999999999976654
No 218
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=7e-14 Score=121.45 Aligned_cols=221 Identities=14% Similarity=0.067 Sum_probs=139.6
Q ss_pred eccCCCCCceeEEEeccCCCCCceEEEEccC---CeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccc
Q 019405 44 RWGDPHSSNCVLAASIDDSQNDPLLAVARKN---GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS 120 (341)
Q Consensus 44 ~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (341)
.+..+...+...+||+++. .|+..+.+ ..|++||+.+++.... ... .+......|.+...
T Consensus 198 ~lt~~~~~v~~p~wSPDG~----~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~--------~g~~~~~~wSPDG~---- 260 (429)
T PRK01742 198 IVNRSSQPLMSPAWSPDGS----KLAYVSFENKKSQLVVHDLRSGARKVV-ASF--------RGHNGAPAFSPDGS---- 260 (429)
T ss_pred EeccCCCccccceEcCCCC----EEEEEEecCCCcEEEEEeCCCCceEEE-ecC--------CCccCceeECCCCC----
Confidence 4555666777777777665 78876543 4699999987754221 111 01122344444333
Q ss_pred cccceeEEE-cccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEee-CCCeEEEEECCCC-cee
Q 019405 121 SRSRTLLTC-TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG-KGVEVNVWDLDKC-EKI 197 (341)
Q Consensus 121 ~~~~~l~~~-~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~v~i~d~~~~-~~~ 197 (341)
.++.+ ..+|...||.++... +.++... .+...+....|+||++.|+..+ .++...+|++... ...
T Consensus 261 ----~La~~~~~~g~~~Iy~~d~~~-------~~~~~lt-~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~ 328 (429)
T PRK01742 261 ----RLAFASSKDGVLNIYVMGANG-------GTPSQLT-SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA 328 (429)
T ss_pred ----EEEEEEecCCcEEEEEEECCC-------CCeEeec-cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence 55554 467877777654321 1222222 2334577899999999877655 5677888876432 111
Q ss_pred eecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEe
Q 019405 198 WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN 277 (341)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~ 277 (341)
..+ .+. . ....| +|++++|+..+.++ +.+||+.+++. ..+..+ .....+.|+|+|++|+.++
T Consensus 329 ~~l-~~~---------~--~~~~~--SpDG~~ia~~~~~~-i~~~Dl~~g~~--~~lt~~-~~~~~~~~sPdG~~i~~~s 390 (429)
T PRK01742 329 SLV-GGR---------G--YSAQI--SADGKTLVMINGDN-VVKQDLTSGST--EVLSST-FLDESPSISPNGIMIIYSS 390 (429)
T ss_pred EEe-cCC---------C--CCccC--CCCCCEEEEEcCCC-EEEEECCCCCe--EEecCC-CCCCCceECCCCCEEEEEE
Confidence 212 111 1 23567 89999998887765 55699987653 222222 1335678999999999999
Q ss_pred CCCCEEEEEC--CCCeEEeEEeccccCceeEEEecCC
Q 019405 278 GSGDLASVDI--RTGKLLGCFIGKCSGSIRSIARHPT 312 (341)
Q Consensus 278 ~dg~i~iwd~--~~~~~~~~~~~~~~~~i~~~~~~~~ 312 (341)
.++...+|++ .+++.+..+..| .+.+..++|+|-
T Consensus 391 ~~g~~~~l~~~~~~G~~~~~l~~~-~g~~~~p~wsp~ 426 (429)
T PRK01742 391 TQGLGKVLQLVSADGRFKARLPGS-DGQVKFPAWSPY 426 (429)
T ss_pred cCCCceEEEEEECCCCceEEccCC-CCCCCCcccCCC
Confidence 9998888875 367888888877 788899999985
No 219
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.62 E-value=1.8e-13 Score=104.86 Aligned_cols=140 Identities=14% Similarity=0.159 Sum_probs=102.7
Q ss_pred ceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEe--eCCCeEEEEECCCCceeeecCCCCCCccCc
Q 019405 133 GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFG--GKGVEVNVWDLDKCEKIWTAKPPPKNSLGI 210 (341)
Q Consensus 133 g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~--~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~ 210 (341)
+...++.++.. +..+....+...++|..++|+|+++.+++. ..++.|.+||++ ++.+..+..
T Consensus 37 ~~~~l~~~~~~-------~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~~-------- 100 (194)
T PF08662_consen 37 GEFELFYLNEK-------NIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFGT-------- 100 (194)
T ss_pred eeEEEEEEecC-------CCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeecC--------
Confidence 44556655332 234555666556679999999999987654 467799999996 666666654
Q ss_pred cCCeeeeEEEEEecCCCCEEEEEeC---CCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeC------CCC
Q 019405 211 FTPTWFTSAAFLSIDDHRKFVAGTN---DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG------SGD 281 (341)
Q Consensus 211 ~~~~~v~~~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~------dg~ 281 (341)
..+..+.| +|+|++|++++. .|.|.+||.++.+. +.... | ..++.++|+|+|++|+++.. |+.
T Consensus 101 ---~~~n~i~w--sP~G~~l~~~g~~n~~G~l~~wd~~~~~~-i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng 172 (194)
T PF08662_consen 101 ---QPRNTISW--SPDGRFLVLAGFGNLNGDLEFWDVRKKKK-ISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNG 172 (194)
T ss_pred ---CCceEEEE--CCCCCEEEEEEccCCCcEEEEEECCCCEE-eeccc-c-CcEEEEEEcCCCCEEEEEEeccceecccc
Confidence 23678999 999999999874 46799999997553 54443 3 35789999999999998874 688
Q ss_pred EEEEECCCCeEEeEEe
Q 019405 282 LASVDIRTGKLLGCFI 297 (341)
Q Consensus 282 i~iwd~~~~~~~~~~~ 297 (341)
++||+.. |+++....
T Consensus 173 ~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 173 FKIWSFQ-GRLLYKKP 187 (194)
T ss_pred EEEEEec-CeEeEecc
Confidence 9999984 77765543
No 220
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=3.5e-15 Score=123.84 Aligned_cols=163 Identities=17% Similarity=0.343 Sum_probs=131.4
Q ss_pred ecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeE
Q 019405 160 CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239 (341)
Q Consensus 160 ~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i 239 (341)
.|.++|.|+.|+.+|.+|++|+.|-.+.|||.-..+.+..+... |...|.++.|.|..+..++++|..|..|
T Consensus 48 GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~Tg--------HtaNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 48 GHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTG--------HTANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred cccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecc--------cccceeEEeeeccCCCeEEEeccCcceE
Confidence 46789999999999999999999999999999877776665543 4466999999988888999999999999
Q ss_pred EEEEcCC---------CCceeEEEEecCCCeEEEEEcCCC-ceEEEEeCCCCEEEEECCCCeE----------EeEEecc
Q 019405 240 RLYDTSA---------QRRPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKL----------LGCFIGK 299 (341)
Q Consensus 240 ~iwd~~~---------~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~iwd~~~~~~----------~~~~~~~ 299 (341)
++||+.. .+.+...+..|...|..++-.|++ ..+.+++.||+|+-+|++.... +..+...
T Consensus 120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~ 199 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ 199 (758)
T ss_pred EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchh
Confidence 9999985 223455667788899999999988 7888999999999999986311 1111111
Q ss_pred ccCceeEEEecCCCC-EEEEEeCCCcEEEEEcC
Q 019405 300 CSGSIRSIARHPTLP-IIASCGLDSYLRFWDIK 331 (341)
Q Consensus 300 ~~~~i~~~~~~~~~~-~l~s~~~dg~v~iwd~~ 331 (341)
--...++..+|..+ +|+.|+.|-..++||.+
T Consensus 200 -lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 200 -LIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred -hheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 23567889999765 78999999999999954
No 221
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.58 E-value=3.2e-13 Score=120.20 Aligned_cols=189 Identities=16% Similarity=0.095 Sum_probs=140.7
Q ss_pred eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCC
Q 019405 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP 204 (341)
Q Consensus 125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~ 204 (341)
.++.+..+..+.+|+......+............ ...-+-.+++.-++++|+.-+.|.+|+....+.-.
T Consensus 101 ~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~-----~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~------ 169 (967)
T KOG0974|consen 101 KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLY-----SSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPI------ 169 (967)
T ss_pred eEEEEEcCceEEEEecccCceehhcCCCceEEEE-----eEEEEeccCcEEEEEeccccccEEEEeccccCCcc------
Confidence 5566666666666665443322111000000000 11223345677789999999999999986221111
Q ss_pred CCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEE
Q 019405 205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLAS 284 (341)
Q Consensus 205 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~i 284 (341)
....|.+.|.++.+ +.+|.++++.++|+++|+|++.+.+......-+|...+..+.|.|+ .+++++.|.+.++
T Consensus 170 ---~l~GHeG~iF~i~~--s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrv 242 (967)
T KOG0974|consen 170 ---RLKGHEGSIFSIVT--SLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRV 242 (967)
T ss_pred ---eecccCCceEEEEE--ccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEE
Confidence 22335577999999 8999999999999999999999987655466679999999999999 8999999999999
Q ss_pred EECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405 285 VDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (341)
Q Consensus 285 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 332 (341)
|+.. ++.+..+.+|....|+.++..++...++|++.|+.+++||+..
T Consensus 243 W~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 243 WGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred Eecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 9764 5566688888788999999999999999999999999999864
No 222
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=4.5e-14 Score=113.60 Aligned_cols=159 Identities=16% Similarity=0.091 Sum_probs=120.1
Q ss_pred EEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcC
Q 019405 166 AFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS 245 (341)
Q Consensus 166 ~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~ 245 (341)
.+++++++|..+++++.||++++|+..+...+.....+. ..|.++.| +||+++|++-+.| ..+||+.+
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~---------~eV~DL~F--S~dgk~lasig~d-~~~VW~~~ 215 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHH---------AEVKDLDF--SPDGKFLASIGAD-SARVWSVN 215 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhc---------Ccccccee--CCCCcEEEEecCC-ceEEEEec
Confidence 688999999999999999999999987776665555544 55999999 9999999999999 89999999
Q ss_pred CCCceeEEEEe--cCCCeEEEEEcCCC-----ceEEEEeCCCCEEEEECCCCeE-----EeEEeccccCceeEEEecCCC
Q 019405 246 AQRRPVMSFDF--RETPIKAVAEEPDS-----FNIYIGNGSGDLASVDIRTGKL-----LGCFIGKCSGSIRSIARHPTL 313 (341)
Q Consensus 246 ~~~~~~~~~~~--~~~~v~~~~~~~~~-----~~l~~g~~dg~i~iwd~~~~~~-----~~~~~~~~~~~i~~~~~~~~~ 313 (341)
++.. +..... .......+.|+.++ ..++.....+.|+.||+..... ..+.... ...|.+++.+++|
T Consensus 216 ~g~~-~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~-~~siSsl~VS~dG 293 (398)
T KOG0771|consen 216 TGAA-LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKR-FKSISSLAVSDDG 293 (398)
T ss_pred cCch-hhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhc-cCcceeEEEcCCC
Confidence 9753 554442 23345677888766 3333334456677776643221 1111121 3589999999999
Q ss_pred CEEEEEeCCCcEEEEEcCCCceeee
Q 019405 314 PIIASCGLDSYLRFWDIKTRQLLSA 338 (341)
Q Consensus 314 ~~l~s~~~dg~v~iwd~~~~~~~~~ 338 (341)
++++.|+.||.|.|++..+.++++-
T Consensus 294 kf~AlGT~dGsVai~~~~~lq~~~~ 318 (398)
T KOG0771|consen 294 KFLALGTMDGSVAIYDAKSLQRLQY 318 (398)
T ss_pred cEEEEeccCCcEEEEEeceeeeeEe
Confidence 9999999999999999998877654
No 223
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.56 E-value=2.2e-14 Score=124.61 Aligned_cols=232 Identities=10% Similarity=0.079 Sum_probs=168.1
Q ss_pred ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 94 (341)
-.+++|+.|-.+|+|..++. .+.....+|.+.++-++.+.... ++++++.|..|++|.+.++.++..+.+|
T Consensus 203 ~~Iitgsdd~lvKiwS~et~-----~~lAs~rGhs~ditdlavs~~n~----~iaaaS~D~vIrvWrl~~~~pvsvLrgh 273 (1113)
T KOG0644|consen 203 RYIITGSDDRLVKIWSMETA-----RCLASCRGHSGDITDLAVSSNNT----MIAAASNDKVIRVWRLPDGAPVSVLRGH 273 (1113)
T ss_pred ceEeecCccceeeeeeccch-----hhhccCCCCccccchhccchhhh----hhhhcccCceEEEEecCCCchHHHHhcc
Confidence 46889999999999997776 66778899999999999887776 7999999999999999999999999984
Q ss_pred CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccc---------------------------c
Q 019405 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS---------------------------A 147 (341)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~---------------------------~ 147 (341)
.+.++.+++.+. .+.+.||+..+|+..+.+.. +
T Consensus 274 --------tgavtaiafsP~------------~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~T 333 (1113)
T KOG0644|consen 274 --------TGAVTAIAFSPR------------ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLT 333 (1113)
T ss_pred --------ccceeeeccCcc------------ccCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccc
Confidence 577888777542 35678999999998744321 1
Q ss_pred ccCCceEEEEEeecCCceEEEEecCCC-----------CEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeee
Q 019405 148 ESSCSTVKSWNVCASGTIAFSKVDISE-----------KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWF 216 (341)
Q Consensus 148 ~~~~~~v~~~~~~~~~~i~~~~~~~~~-----------~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v 216 (341)
++.++.-..|.. .++++.... .+.+++-.+-.+.+|++.+++....+..+. ..+
T Consensus 334 gs~d~ea~n~e~------~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghs---------d~~ 398 (1113)
T KOG0644|consen 334 GSRDGEARNHEF------EQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHS---------DEV 398 (1113)
T ss_pred ccCCcccccchh------hHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccc---------cce
Confidence 222222222221 122222211 233444455668889998888777766654 557
Q ss_pred eEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeE
Q 019405 217 TSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL 292 (341)
Q Consensus 217 ~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~ 292 (341)
..+.++ +.+.....+++.||...|||+..+.. ++.+......+...+||++|..++....-|.++|.....++.
T Consensus 399 yvLd~H-pfn~ri~msag~dgst~iwdi~eg~p-ik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 399 YVLDVH-PFNPRIAMSAGYDGSTIIWDIWEGIP-IKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKS 472 (1113)
T ss_pred eeeeec-CCCcHhhhhccCCCceEeeecccCCc-ceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCcc
Confidence 778885 34556667899999999999998764 444433345677889999999999988889999997765543
No 224
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.56 E-value=4.5e-13 Score=112.37 Aligned_cols=212 Identities=10% Similarity=0.109 Sum_probs=154.9
Q ss_pred CCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeec
Q 019405 64 NDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT 143 (341)
Q Consensus 64 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~ 143 (341)
...++|....||.++||+..+++....+.... ..+..++-..|.+.-.
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~--------------------------------~~s~t~~~~~w~L~~~ 51 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIA--------------------------------SLSGTCTYTKWGLSAD 51 (541)
T ss_pred hhheEeecCCCCeEEEEEccCceeeeeeccch--------------------------------hccCcceeEEEEEEec
Confidence 34589999999999999999888776665421 1111222333332111
Q ss_pred ccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEe
Q 019405 144 KVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS 223 (341)
Q Consensus 144 ~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 223 (341)
+.+.+.-... .....+.+...++-|...|.|.+|+...++..+.+.... |.+.|.++.+
T Consensus 52 -------~s~~k~~~~~-----~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~-------h~~~v~~~~~-- 110 (541)
T KOG4547|consen 52 -------YSPMKWLSLE-----KAKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDK-------HYGNVNEILD-- 110 (541)
T ss_pred -------cchHHHHhHH-----HHhhccCCceEEEeecCCccEEEEEecCCeEEEEEecCC-------CCCcceeeec--
Confidence 0011100000 001122355678888999999999999999888887544 5577999988
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCc
Q 019405 224 IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGS 303 (341)
Q Consensus 224 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~ 303 (341)
+.+-..|.+++.|+.+..|+..... .+..+......+.+++.+||+..+++++ +.|++||+++++.+..|.+| .++
T Consensus 111 ~~~~~ciyS~~ad~~v~~~~~~~~~-~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh-~s~ 186 (541)
T KOG4547|consen 111 AQRLGCIYSVGADLKVVYILEKEKV-IIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGH-GSP 186 (541)
T ss_pred ccccCceEecCCceeEEEEecccce-eeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCC-Ccc
Confidence 7778899999999999999999855 4778888888899999999999999886 47999999999999999998 999
Q ss_pred eeEEEecCC-----CCEEE-EEeCCCcEEEEEcCC
Q 019405 304 IRSIARHPT-----LPIIA-SCGLDSYLRFWDIKT 332 (341)
Q Consensus 304 i~~~~~~~~-----~~~l~-s~~~dg~v~iwd~~~ 332 (341)
|.++.|--+ |.+++ +...+.-+.+|-+..
T Consensus 187 v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 187 VRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred eEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 999999876 55554 445666778887654
No 225
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.53 E-value=4e-10 Score=93.09 Aligned_cols=279 Identities=18% Similarity=0.130 Sum_probs=158.3
Q ss_pred CCCCCceeeeecCC-----CCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEc----------cC
Q 019405 10 PGCPPLRALTFDSL-----GLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR----------KN 74 (341)
Q Consensus 10 ~~~~~~~~~~~~~~-----g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~----------~d 74 (341)
|..++.+++..+.. |.+.+++.... +++..+.....+.. + +|+|++ .|+++. .+
T Consensus 8 ~~~~~~~v~V~d~~~~~~~~~v~ViD~~~~-----~v~g~i~~G~~P~~-~-~spDg~----~lyva~~~~~R~~~G~~~ 76 (352)
T TIGR02658 8 PASDARRVYVLDPGHFAATTQVYTIDGEAG-----RVLGMTDGGFLPNP-V-VASDGS----FFAHASTVYSRIARGKRT 76 (352)
T ss_pred CCCCCCEEEEECCcccccCceEEEEECCCC-----EEEEEEEccCCCce-e-ECCCCC----EEEEEeccccccccCCCC
Confidence 44455666666655 88999998886 66666644444443 3 666665 555544 47
Q ss_pred CeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEc-c-cceeEEEEeeecccccccCCc
Q 019405 75 GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT-T-KGKASMRSIEVTKVSAESSCS 152 (341)
Q Consensus 75 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~-~g~~~i~~~~~~~~~~~~~~~ 152 (341)
..|.+||..+.+.+.++..-....+. . ..-.....+.++++ .++... . +..+.+.|+.
T Consensus 77 d~V~v~D~~t~~~~~~i~~p~~p~~~-~-~~~~~~~~ls~dgk-------~l~V~n~~p~~~V~VvD~~----------- 136 (352)
T TIGR02658 77 DYVEVIDPQTHLPIADIELPEGPRFL-V-GTYPWMTSLTPDNK-------TLLFYQFSPSPAVGVVDLE----------- 136 (352)
T ss_pred CEEEEEECccCcEEeEEccCCCchhh-c-cCccceEEECCCCC-------EEEEecCCCCCEEEEEECC-----------
Confidence 89999999999998888752111000 0 01111112222221 333222 1 3445555543
Q ss_pred eEEEEEeecCCceEEEEecCCCCEEEEe--------eCCCeEEEEECCC-Ccee-eecCC--CCCCccCccCCeeeeEEE
Q 019405 153 TVKSWNVCASGTIAFSKVDISEKFSLFG--------GKGVEVNVWDLDK-CEKI-WTAKP--PPKNSLGIFTPTWFTSAA 220 (341)
Q Consensus 153 ~v~~~~~~~~~~i~~~~~~~~~~~l~~~--------~~d~~v~i~d~~~-~~~~-~~~~~--~~~~~~~~~~~~~v~~~~ 220 (341)
.+..+..+.. |++..++.. +.||......+.+ ++.. ..... .....+ ..++ .
T Consensus 137 --------~~kvv~ei~v-p~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v-~~rP------~ 200 (352)
T TIGR02658 137 --------GKAFVRMMDV-PDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYL-INHP------A 200 (352)
T ss_pred --------CCcEEEEEeC-CCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCcccc-ccCC------c
Confidence 3333333333 444443333 2333333322221 2111 10000 000000 0011 2
Q ss_pred EEecCCCCEEEEEeCCCeEEEEEcCCCC----ceeEEEEe-------cCCCeEEEEEcCCCceEEEEe----------CC
Q 019405 221 FLSIDDHRKFVAGTNDHQVRLYDTSAQR----RPVMSFDF-------RETPIKAVAEEPDSFNIYIGN----------GS 279 (341)
Q Consensus 221 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~----~~~~~~~~-------~~~~v~~~~~~~~~~~l~~g~----------~d 279 (341)
|. ..++.++.+... |+|.+.|+.... .+...+.. ....+.-++++|+++.+++.. ..
T Consensus 201 ~~-~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~ 278 (352)
T TIGR02658 201 YS-NKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTAS 278 (352)
T ss_pred eE-cCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCC
Confidence 31 337777777666 999999975432 11222211 122334499999998888743 22
Q ss_pred CCEEEEECCCCeEEeEEeccccCceeEEEecCCCC-EEEEEe-CCCcEEEEEcCCCceeeee
Q 019405 280 GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP-IIASCG-LDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 280 g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~-~dg~v~iwd~~~~~~~~~~ 339 (341)
+.|.++|..+++.+..+.. ...+..++++||++ +|++.+ .++.|.++|+.+++.++++
T Consensus 279 ~~V~ViD~~t~kvi~~i~v--G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 279 RFLFVVDAKTGKRLRKIEL--GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CEEEEEECCCCeEEEEEeC--CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 5799999999999998885 45899999999999 777666 6788999999999999886
No 226
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=3.3e-11 Score=104.61 Aligned_cols=219 Identities=9% Similarity=0.040 Sum_probs=133.8
Q ss_pred eEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEc---ccceeEEEEeeecccccccCCc
Q 019405 76 LTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT---TKGKASMRSIEVTKVSAESSCS 152 (341)
Q Consensus 76 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~g~~~i~~~~~~~~~~~~~~~ 152 (341)
.|.+||.+.... ..+.. +...+....|.+... .++..+ .+..+.+|++..+.
T Consensus 180 ~l~~~d~dg~~~-~~lt~--------~~~~~~~p~wSPDG~--------~la~~s~~~g~~~i~i~dl~~G~-------- 234 (429)
T PRK03629 180 ELRVSDYDGYNQ-FVVHR--------SPQPLMSPAWSPDGS--------KLAYVTFESGRSALVIQTLANGA-------- 234 (429)
T ss_pred eEEEEcCCCCCC-EEeec--------CCCceeeeEEcCCCC--------EEEEEEecCCCcEEEEEECCCCC--------
Confidence 688888864433 33322 224455566655544 454432 23456677764321
Q ss_pred eEEEEEeecCCceEEEEecCCCCEEEEe-eCCC--eEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCE
Q 019405 153 TVKSWNVCASGTIAFSKVDISEKFSLFG-GKGV--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRK 229 (341)
Q Consensus 153 ~v~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 229 (341)
.+... ...+......|+|||+.|+.. ..++ .|++||+.+++........ ..+....| +|+++.
T Consensus 235 -~~~l~-~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~----------~~~~~~~w--SPDG~~ 300 (429)
T PRK03629 235 -VRQVA-SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGR----------SNNTEPTW--FPDSQN 300 (429)
T ss_pred -eEEcc-CCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCC----------CCcCceEE--CCCCCE
Confidence 11111 112334568999999988864 3344 5999999887654332221 22566788 899998
Q ss_pred EEEEeCC-C--eEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCC---CCEEEEECCCCeEEeEEeccccCc
Q 019405 230 FVAGTND-H--QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS---GDLASVDIRTGKLLGCFIGKCSGS 303 (341)
Q Consensus 230 l~~~~~d-~--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d---g~i~iwd~~~~~~~~~~~~~~~~~ 303 (341)
|+..+.+ + .|.++|+.+++ ...+..+........|+|+|++|+..+.+ ..|++||+.+++.. .+... ..
T Consensus 301 I~f~s~~~g~~~Iy~~d~~~g~--~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~--~~ 375 (429)
T PRK03629 301 LAYTSDQAGRPQVYKVNINGGA--PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT--FL 375 (429)
T ss_pred EEEEeCCCCCceEEEEECCCCC--eEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC--CC
Confidence 8877654 3 45555666543 34444444456678999999998876543 35889999887643 33322 23
Q ss_pred eeEEEecCCCCEEEEEeCCCc---EEEEEcCCCceeeee
Q 019405 304 IRSIARHPTLPIIASCGLDSY---LRFWDIKTRQLLSAV 339 (341)
Q Consensus 304 i~~~~~~~~~~~l~s~~~dg~---v~iwd~~~~~~~~~~ 339 (341)
.....|+|||+.|+.++.++. +.++++. |+...++
T Consensus 376 ~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l 413 (429)
T PRK03629 376 DETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARL 413 (429)
T ss_pred CCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEEC
Confidence 456789999999999888764 6777774 4444443
No 227
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=8.5e-12 Score=104.59 Aligned_cols=265 Identities=15% Similarity=0.135 Sum_probs=171.2
Q ss_pred CeEEEEEecCccCccceeeeccCCC--CCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCC
Q 019405 25 LIKVIEARGEHGGVPKVVERWGDPH--SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPE 102 (341)
Q Consensus 25 ~i~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 102 (341)
.|+++++..- .+ .|..|- ..|.....+-|.+ .++.-..|.+|.+-.-........+..
T Consensus 75 ~ikvydlanL-----SL--KFERhlDae~V~feiLsDD~S----K~v~L~~DR~IefHak~G~hy~~RIP~--------- 134 (703)
T KOG2321|consen 75 QIKVYDLANL-----SL--KFERHLDAEVVDFEILSDDYS----KSVFLQNDRTIEFHAKYGRHYRTRIPK--------- 134 (703)
T ss_pred ceEEEEcccc-----ee--eeeecccccceeEEEeccchh----hheEeecCceeeehhhcCeeeeeecCc---------
Confidence 4477777764 23 555543 3344445555555 355566677777654321111111111
Q ss_pred CCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeC
Q 019405 103 DDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK 182 (341)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 182 (341)
.+. .+.+....- -|+.++....+.=++++.+. .+.-+.. ..+.++++.+++-..+|++|+.
T Consensus 135 ~GR--Dm~y~~~sc--------Dly~~gsg~evYRlNLEqGr--------fL~P~~~-~~~~lN~v~in~~hgLla~Gt~ 195 (703)
T KOG2321|consen 135 FGR--DMKYHKPSC--------DLYLVGSGSEVYRLNLEQGR--------FLNPFET-DSGELNVVSINEEHGLLACGTE 195 (703)
T ss_pred CCc--cccccCCCc--------cEEEeecCcceEEEEccccc--------ccccccc-ccccceeeeecCccceEEeccc
Confidence 011 122222222 44555555556555665443 3333333 3478999999999999999999
Q ss_pred CCeEEEEECCCCceeeecCCCCC--CccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCC
Q 019405 183 GVEVNVWDLDKCEKIWTAKPPPK--NSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETP 260 (341)
Q Consensus 183 d~~v~i~d~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 260 (341)
+|.|..||.+....+..+..... ..........|+++.| +.+|-.+++|+.+|.+.|||++..+..+..-.....+
T Consensus 196 ~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F--~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~p 273 (703)
T KOG2321|consen 196 DGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKF--RDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELP 273 (703)
T ss_pred CceEEEecchhhhhheeeecccccCCCccccccCcceEEEe--cCCceeEEeeccCCcEEEEEcccCCceeecccCCccc
Confidence 99999999998766555543322 0011111234999999 7789999999999999999999865433333334568
Q ss_pred eEEEEEcCCC--ceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCC
Q 019405 261 IKAVAEEPDS--FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR 333 (341)
Q Consensus 261 v~~~~~~~~~--~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 333 (341)
|..+.|.+.+ ..+++ .....++|||-.+|+....+.. ...++.+++-|++.+++++-.++.+..|=+..-
T Consensus 274 i~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEp--t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 274 IKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPMASIEP--TSDLNDFCFVPGSGMFFTANESSKMHTYYIPSL 345 (703)
T ss_pred eeeecccccCCCceEEe-cchHHhhhcccccCCceeeccc--cCCcCceeeecCCceEEEecCCCcceeEEcccc
Confidence 8999997753 34443 4456799999999999888875 456999999999999999998888877766543
No 228
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.52 E-value=1.6e-10 Score=97.59 Aligned_cols=198 Identities=17% Similarity=0.176 Sum_probs=125.7
Q ss_pred EEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeeccccc
Q 019405 68 LAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSA 147 (341)
Q Consensus 68 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~ 147 (341)
+++-..++.|.|.|..+.+.+.++... ........+.+++. ++.+++.||.+.++|+...+
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~---------~~~h~~~~~s~Dgr-------~~yv~~rdg~vsviD~~~~~--- 69 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTG---------GAPHAGLKFSPDGR-------YLYVANRDGTVSVIDLATGK--- 69 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-S---------TTEEEEEE-TT-SS-------EEEEEETTSEEEEEETTSSS---
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCC---------CCceeEEEecCCCC-------EEEEEcCCCeEEEEECCccc---
Confidence 345667899999999999998888762 23333334444332 67777889999999987544
Q ss_pred ccCCceEEEEEeecCCceEEEEecCCCCEEEEee-CCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCC
Q 019405 148 ESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG-KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD 226 (341)
Q Consensus 148 ~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 226 (341)
.+.... .+.....+++++||++++++. .++.+.++|.++.+.+..+.......-. ....+..+.. ++.
T Consensus 70 -----~v~~i~--~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~--~~~Rv~aIv~--s~~ 138 (369)
T PF02239_consen 70 -----VVATIK--VGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDG--PESRVAAIVA--SPG 138 (369)
T ss_dssp -----EEEEEE---SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTT--S---EEEEEE---SS
T ss_pred -----EEEEEe--cCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccc--cCCCceeEEe--cCC
Confidence 444433 356778999999999988764 6899999999999998877654211100 1244666666 666
Q ss_pred CCEEEEEeC-CCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEE-eCCCCEEEEECCCCeEEeE
Q 019405 227 HRKFVAGTN-DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIG-NGSGDLASVDIRTGKLLGC 295 (341)
Q Consensus 227 ~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g-~~dg~i~iwd~~~~~~~~~ 295 (341)
...++..-. .+.|.+.|....+.+...............|+|++++++++ ..++.|-++|.++++.+..
T Consensus 139 ~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~ 209 (369)
T PF02239_consen 139 RPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVAL 209 (369)
T ss_dssp SSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred CCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEE
Confidence 665555444 58888888877544333333344567789999999987664 4567888898887765543
No 229
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=1.6e-12 Score=104.10 Aligned_cols=211 Identities=12% Similarity=0.082 Sum_probs=154.0
Q ss_pred CCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEee
Q 019405 102 EDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG 181 (341)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~ 181 (341)
|.+-|..+.+...+. .|++|+.|..+.+|.++..-... ..++|.+....|...|.|++|+-....+++|+
T Consensus 55 H~GCiNAlqFS~N~~--------~L~SGGDD~~~~~W~~de~~~~k--~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~ 124 (609)
T KOG4227|consen 55 HTGCINALQFSHNDR--------FLASGGDDMHGRVWNVDELMVRK--TPKPIGVMEHPHRSNIFSLEFDLENRFLYSGE 124 (609)
T ss_pred hccccceeeeccCCe--------EEeecCCcceeeeechHHHHhhc--CCCCceeccCccccceEEEEEccCCeeEecCC
Confidence 446677777766655 89999999999999986532211 23467777777778999999999999999999
Q ss_pred CCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEe--cCC
Q 019405 182 KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF--RET 259 (341)
Q Consensus 182 ~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~~~ 259 (341)
.+++|...|+++.+.+..+..... .+.|+.+.. +|..+.|++.+.++.|.+||.+....+...+.. ...
T Consensus 125 ~~~~VI~HDiEt~qsi~V~~~~~~-------~~~VY~m~~--~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~ 195 (609)
T KOG4227|consen 125 RWGTVIKHDIETKQSIYVANENNN-------RGDVYHMDQ--HPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGK 195 (609)
T ss_pred CcceeEeeecccceeeeeecccCc-------ccceeeccc--CCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCc
Confidence 999999999999888877654331 246888888 778899999999999999999975533333322 234
Q ss_pred CeEEEEEcCCC-ceEEEEeCCCCEEEEECCCCeE-EeE------EeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcC
Q 019405 260 PIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKL-LGC------FIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331 (341)
Q Consensus 260 ~v~~~~~~~~~-~~l~~g~~dg~i~iwd~~~~~~-~~~------~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~ 331 (341)
....+.|+|.. .+|++.+..+-+.+||.+..+. +.. ++.. ...-.++.|+|+|..|++--....-.+||+.
T Consensus 196 ~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~-~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~ 274 (609)
T KOG4227|consen 196 NFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQE-NTEWMGSLWSPSGNQFMSIRRGKCPLYFDFI 274 (609)
T ss_pred cceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCccc-chhhhheeeCCCCCeehhhhccCCCEEeeee
Confidence 56788999966 6778888889999999985432 211 1111 1223567899999888776554445566665
Q ss_pred C
Q 019405 332 T 332 (341)
Q Consensus 332 ~ 332 (341)
+
T Consensus 275 S 275 (609)
T KOG4227|consen 275 S 275 (609)
T ss_pred c
Confidence 5
No 230
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=4.4e-12 Score=100.51 Aligned_cols=181 Identities=9% Similarity=0.068 Sum_probs=124.2
Q ss_pred eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC-CEEEEeeCCCeEEEEECCC----Cceeee
Q 019405 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDK----CEKIWT 199 (341)
Q Consensus 125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~i~d~~~----~~~~~~ 199 (341)
.++++..|-.+++|+-.. .............|.|++|-|.+ ..|++|... -|.+|.... +..+..
T Consensus 112 ~fava~nddvVriy~kss---------t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~ 181 (445)
T KOG2139|consen 112 AFAVATNDDVVRIYDKSS---------TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRM 181 (445)
T ss_pred hhhhhccCcEEEEeccCC---------CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccccccccc
Confidence 678888888888887532 12233333345689999999954 567777766 499998753 122222
Q ss_pred cCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeC-CCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeC
Q 019405 200 AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG 278 (341)
Q Consensus 200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~ 278 (341)
...+....+.-....+|+++.| .+|+..+++++. |..|.|||..++.. +......-+.++-+.||||+.+|+++.-
T Consensus 182 ~s~~~~qvl~~pgh~pVtsmqw--n~dgt~l~tAS~gsssi~iWdpdtg~~-~pL~~~glgg~slLkwSPdgd~lfaAt~ 258 (445)
T KOG2139|consen 182 MSTHHLQVLQDPGHNPVTSMQW--NEDGTILVTASFGSSSIMIWDPDTGQK-IPLIPKGLGGFSLLKWSPDGDVLFAATC 258 (445)
T ss_pred ccccchhheeCCCCceeeEEEE--cCCCCEEeecccCcceEEEEcCCCCCc-ccccccCCCceeeEEEcCCCCEEEEecc
Confidence 2222222222223377999999 889999998774 67899999998764 2222234457888999999999999999
Q ss_pred CCCEEEEECC-CCeEEeEEeccccCceeEEEecCCCCEEEEEe
Q 019405 279 SGDLASVDIR-TGKLLGCFIGKCSGSIRSIARHPTLPIIASCG 320 (341)
Q Consensus 279 dg~i~iwd~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 320 (341)
|+..++|... +.....-.-+ .+.|...+|+|+|++|+.++
T Consensus 259 davfrlw~e~q~wt~erw~lg--sgrvqtacWspcGsfLLf~~ 299 (445)
T KOG2139|consen 259 DAVFRLWQENQSWTKERWILG--SGRVQTACWSPCGSFLLFAC 299 (445)
T ss_pred cceeeeehhcccceecceecc--CCceeeeeecCCCCEEEEEE
Confidence 9999999544 3333333333 56899999999999765543
No 231
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.49 E-value=2e-11 Score=96.27 Aligned_cols=293 Identities=12% Similarity=0.101 Sum_probs=168.4
Q ss_pred CceeeeecCCCCeEEEEEecCccCccceeeeccCCC------------CCceeEEEeccCCCCCceEEEEccCCeEEEee
Q 019405 14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPH------------SSNCVLAASIDDSQNDPLLAVARKNGLTDILN 81 (341)
Q Consensus 14 ~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~------------~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~ 81 (341)
.-++.+|+.+|.+-++.-.....|.......++.|+ ..+.-+.+...... ..++..+.|.+|++|.
T Consensus 37 Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~--a~FLlstNdktiKlWK 114 (433)
T KOG1354|consen 37 GERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNL--AEFLLSTNDKTIKLWK 114 (433)
T ss_pred cceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCc--cEEEEecCCcceeeee
Confidence 356888999998877765554333333333443333 33555666665553 3677778899999998
Q ss_pred CCCCcchhe-eec--cCCC---------CC----------------CCCCCceeeEeeeeccccccccccceeEEEcccc
Q 019405 82 PLNGDLRVA-ISN--AGDS---------GA----------------QPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG 133 (341)
Q Consensus 82 ~~~~~~~~~-~~~--~~~~---------~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g 133 (341)
+........ +.. ..+. .. -.|.-.+.++...+.. ..+....|=
T Consensus 115 i~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~---------Et~lSADdL 185 (433)
T KOG1354|consen 115 IRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDK---------ETFLSADDL 185 (433)
T ss_pred eeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCcc---------ceEeeccce
Confidence 865432220 000 0000 00 0011112222221111 222223344
Q ss_pred eeEEEEeeecccccccCCceEEEEEeecC------CceEEEEecCC-CCEEEEeeCCCeEEEEECCCCcee------eec
Q 019405 134 KASMRSIEVTKVSAESSCSTVKSWNVCAS------GTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDKCEKI------WTA 200 (341)
Q Consensus 134 ~~~i~~~~~~~~~~~~~~~~v~~~~~~~~------~~i~~~~~~~~-~~~l~~~~~d~~v~i~d~~~~~~~------~~~ 200 (341)
.|.+|+++.. ++...+.++... ..|++..|+|. .+.++..+..|+|++-|++..... ...
T Consensus 186 RINLWnlei~-------d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEe 258 (433)
T KOG1354|consen 186 RINLWNLEII-------DQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEE 258 (433)
T ss_pred eeeecccccc-------CCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcc
Confidence 5555555432 223333333221 24677888885 467888888999999999853221 111
Q ss_pred C-CCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCC------------Ce---EEE
Q 019405 201 K-PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRET------------PI---KAV 264 (341)
Q Consensus 201 ~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~------------~v---~~~ 264 (341)
+ .+....+-......|..+.| +.+|+++++-.. -+|++||+....+|+.+++-|.. .| ..+
T Consensus 259 pedp~~rsffseiIsSISDvKF--s~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec 335 (433)
T KOG1354|consen 259 PEDPSSRSFFSEIISSISDVKF--SHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFEC 335 (433)
T ss_pred ccCCcchhhHHHHhhhhhceEE--ccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEE
Confidence 1 11111111111245888999 889999998643 58999999776778888877642 22 357
Q ss_pred EEcCCCceEEEEeCCCCEEEEECCCCeEE-eE-------------------Ee-cc------------ccCceeEEEecC
Q 019405 265 AEEPDSFNIYIGNGSGDLASVDIRTGKLL-GC-------------------FI-GK------------CSGSIRSIARHP 311 (341)
Q Consensus 265 ~~~~~~~~l~~g~~dg~i~iwd~~~~~~~-~~-------------------~~-~~------------~~~~i~~~~~~~ 311 (341)
+|+.++.++++|+..+..++|+...|... .+ .. +. ....|...+|+|
T Consensus 336 ~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp 415 (433)
T KOG1354|consen 336 SWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHP 415 (433)
T ss_pred EEcCCcceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccccccccchhhhhhHHHhhccCC
Confidence 89999999999999999999996543110 00 00 00 022467788999
Q ss_pred CCCEEEEEeCCCcEEEE
Q 019405 312 TLPIIASCGLDSYLRFW 328 (341)
Q Consensus 312 ~~~~l~s~~~dg~v~iw 328 (341)
..+.+|.+..+ .++||
T Consensus 416 ~en~ia~aatn-nlyif 431 (433)
T KOG1354|consen 416 KENSIAVAATN-NLYIF 431 (433)
T ss_pred ccceeeeeecC-ceEEe
Confidence 99988888655 45555
No 232
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.48 E-value=6.1e-09 Score=88.05 Aligned_cols=281 Identities=17% Similarity=0.128 Sum_probs=165.1
Q ss_pred CCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEcc----CCeEEEeeCCCC-cchheeeccCCCC
Q 019405 24 GLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARK----NGLTDILNPLNG-DLRVAISNAGDSG 98 (341)
Q Consensus 24 g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~----dg~i~iw~~~~~-~~~~~~~~~~~~~ 98 (341)
+.|.++++... +|..+.+.... .......++++++.. +|.+... ++.|..|.+... ..+..+....
T Consensus 13 ~gI~~~~~d~~-~g~l~~~~~~~-~~~~Ps~l~~~~~~~----~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~--- 83 (345)
T PF10282_consen 13 GGIYVFRFDEE-TGTLTLVQTVA-EGENPSWLAVSPDGR----RLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVP--- 83 (345)
T ss_dssp TEEEEEEEETT-TTEEEEEEEEE-ESSSECCEEE-TTSS----EEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEE---
T ss_pred CcEEEEEEcCC-CCCceEeeeec-CCCCCceEEEEeCCC----EEEEEEccccCCCCEEEEEECCCcceeEEeeeec---
Confidence 67888888555 46555544432 333445566666555 7777655 578999988754 2222222210
Q ss_pred CCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEe---------ecCCceEEEE
Q 019405 99 AQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV---------CASGTIAFSK 169 (341)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~---------~~~~~i~~~~ 169 (341)
........+...+.... .+++-..+|.+.++++....... .....+.. .......++.
T Consensus 84 --~~g~~p~~i~~~~~g~~-------l~vany~~g~v~v~~l~~~g~l~----~~~~~~~~~g~g~~~~rq~~~h~H~v~ 150 (345)
T PF10282_consen 84 --SGGSSPCHIAVDPDGRF-------LYVANYGGGSVSVFPLDDDGSLG----EVVQTVRHEGSGPNPDRQEGPHPHQVV 150 (345)
T ss_dssp --ESSSCEEEEEECTTSSE-------EEEEETTTTEEEEEEECTTSEEE----EEEEEEESEEEESSTTTTSSTCEEEEE
T ss_pred --cCCCCcEEEEEecCCCE-------EEEEEccCCeEEEEEccCCcccc----eeeeecccCCCCCcccccccccceeEE
Confidence 01133333444333331 44444578999999987532110 01112211 1234578999
Q ss_pred ecCCCCEEEEeeC-CCeEEEEECCCCc--ee--eecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEE-eCCCeEEEEE
Q 019405 170 VDISEKFSLFGGK-GVEVNVWDLDKCE--KI--WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG-TNDHQVRLYD 243 (341)
Q Consensus 170 ~~~~~~~l~~~~~-d~~v~i~d~~~~~--~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~-~~d~~i~iwd 243 (341)
++|+++++++... ...|.+|++.... .. ..+..+. ......++| +|+++++.+. ..++.|.+++
T Consensus 151 ~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~--------G~GPRh~~f--~pdg~~~Yv~~e~s~~v~v~~ 220 (345)
T PF10282_consen 151 FSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPP--------GSGPRHLAF--SPDGKYAYVVNELSNTVSVFD 220 (345)
T ss_dssp E-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECST--------TSSEEEEEE---TTSSEEEEEETTTTEEEEEE
T ss_pred ECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccccc--------CCCCcEEEE--cCCcCEEEEecCCCCcEEEEe
Confidence 9999998887543 3479999997654 21 1122111 134678899 8898877655 4578899999
Q ss_pred cC--CCCc-eeEEEEec------CCCeEEEEEcCCCceEEEEeC-CCCEEEEECC--CCe--EEeEEeccccCceeEEEe
Q 019405 244 TS--AQRR-PVMSFDFR------ETPIKAVAEEPDSFNIYIGNG-SGDLASVDIR--TGK--LLGCFIGKCSGSIRSIAR 309 (341)
Q Consensus 244 ~~--~~~~-~~~~~~~~------~~~v~~~~~~~~~~~l~~g~~-dg~i~iwd~~--~~~--~~~~~~~~~~~~i~~~~~ 309 (341)
+. .+.. .++..... ......++++|+|++|+++.. ++.|.+|++. +++ .+..+... ....+.+++
T Consensus 221 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~-G~~Pr~~~~ 299 (345)
T PF10282_consen 221 YDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG-GKFPRHFAF 299 (345)
T ss_dssp EETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES-SSSEEEEEE
T ss_pred ecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC-CCCccEEEE
Confidence 88 3221 12222211 125678999999999888764 5779999983 343 34444433 445789999
Q ss_pred cCCCCEEEEEe-CCCcEEEEEc--CCCceee
Q 019405 310 HPTLPIIASCG-LDSYLRFWDI--KTRQLLS 337 (341)
Q Consensus 310 ~~~~~~l~s~~-~dg~v~iwd~--~~~~~~~ 337 (341)
+|+|++|+.+. .++.|.+|++ ++|++..
T Consensus 300 s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~ 330 (345)
T PF10282_consen 300 SPDGRYLYVANQDSNTVSVFDIDPDTGKLTP 330 (345)
T ss_dssp -TTSSEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred eCCCCEEEEEecCCCeEEEEEEeCCCCcEEE
Confidence 99999988877 5568999876 5666443
No 233
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=1.6e-10 Score=100.93 Aligned_cols=217 Identities=10% Similarity=0.043 Sum_probs=136.2
Q ss_pred CeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcc---cceeEEEEeeecccccccCC
Q 019405 75 GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT---KGKASMRSIEVTKVSAESSC 151 (341)
Q Consensus 75 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~g~~~i~~~~~~~~~~~~~~ 151 (341)
..|.++|.+ +.....+.. +...+....|.+... .|+..+. +..+.+|++....
T Consensus 182 ~~l~~~d~d-g~~~~~lt~--------~~~~v~~p~wSpDG~--------~lay~s~~~g~~~i~~~dl~~g~------- 237 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTD--------GSSLVLTPRFSPNRQ--------EITYMSYANGRPRVYLLDLETGQ------- 237 (435)
T ss_pred eEEEEECCC-CCCcEEEec--------CCCCeEeeEECCCCC--------EEEEEEecCCCCEEEEEECCCCc-------
Confidence 378888885 443344443 234566666655544 5555432 3578888875332
Q ss_pred ceEEEEEeecCCceEEEEecCCCCEEE-EeeCCC--eEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCC
Q 019405 152 STVKSWNVCASGTIAFSKVDISEKFSL-FGGKGV--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR 228 (341)
Q Consensus 152 ~~v~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 228 (341)
.+... ...+.+...+|+|||+.|+ +.+.++ .|++||+.+++... +..+. .......| +|+++
T Consensus 238 --~~~l~-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-Lt~~~---------~~~~~~~~--spDG~ 302 (435)
T PRK05137 238 --RELVG-NFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR-LTDSP---------AIDTSPSY--SPDGS 302 (435)
T ss_pred --EEEee-cCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEE-ccCCC---------CccCceeE--cCCCC
Confidence 12211 2344667889999998876 445454 47888988765533 33221 22456788 89999
Q ss_pred EEEEEeC-C--CeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCC---CCEEEEECCCCeEEeEEeccccC
Q 019405 229 KFVAGTN-D--HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS---GDLASVDIRTGKLLGCFIGKCSG 302 (341)
Q Consensus 229 ~l~~~~~-d--~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d---g~i~iwd~~~~~~~~~~~~~~~~ 302 (341)
.|+..+. + ..|+++|+..++ .+.+..+...+....|+|+|+.|+....+ ..|.+||+..+.. ..+.. ..
T Consensus 303 ~i~f~s~~~g~~~Iy~~d~~g~~--~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~--~~ 377 (435)
T PRK05137 303 QIVFESDRSGSPQLYVMNADGSN--PRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS--GF 377 (435)
T ss_pred EEEEEECCCCCCeEEEEECCCCC--eEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC--CC
Confidence 8887664 3 368888877644 44454445566778999999999876543 3588889865543 33332 23
Q ss_pred ceeEEEecCCCCEEEEEeCC------CcEEEEEcCCCce
Q 019405 303 SIRSIARHPTLPIIASCGLD------SYLRFWDIKTRQL 335 (341)
Q Consensus 303 ~i~~~~~~~~~~~l~s~~~d------g~v~iwd~~~~~~ 335 (341)
.+..+.|+|||+.|+..+.+ ..+.++|+..++.
T Consensus 378 ~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 378 LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence 56788999999987765543 2578888875543
No 234
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.47 E-value=1.1e-12 Score=102.60 Aligned_cols=230 Identities=13% Similarity=0.053 Sum_probs=148.3
Q ss_pred EEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccce
Q 019405 55 LAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGK 134 (341)
Q Consensus 55 ~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 134 (341)
..||++++ ++|+... -.+.|-|.++-+..+.+... +.|.-+.|-...-. .+...+.++.
T Consensus 14 c~fSp~g~----yiAs~~~-yrlviRd~~tlq~~qlf~cl---------dki~yieW~ads~~-------ilC~~yk~~~ 72 (447)
T KOG4497|consen 14 CSFSPCGN----YIASLSR-YRLVIRDSETLQLHQLFLCL---------DKIVYIEWKADSCH-------ILCVAYKDPK 72 (447)
T ss_pred eeECCCCC----eeeeeee-eEEEEeccchhhHHHHHHHH---------HHhhheeeecccee-------eeeeeeccce
Confidence 35665555 8998874 48999999988877766653 55555555433332 6778888999
Q ss_pred eEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCE-EEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCC
Q 019405 135 ASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKF-SLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTP 213 (341)
Q Consensus 135 ~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~ 213 (341)
+.+|++...+- -...+ .....+..+.|+|||+. |.+..-+-.|.+|.+.+.+.... +.++
T Consensus 73 vqvwsl~Qpew--------~ckId-eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK--------- 133 (447)
T KOG4497|consen 73 VQVWSLVQPEW--------YCKID-EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPK--------- 133 (447)
T ss_pred EEEEEeeccee--------EEEec-cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccc---------
Confidence 99999864321 11111 23457889999999955 45666788999999987655432 2222
Q ss_pred eeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCC--CceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCe
Q 019405 214 TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ--RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK 291 (341)
Q Consensus 214 ~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~ 291 (341)
..+..++| +|+|++.+..+.-...-...+..- -..+..+....-..+.+.|+|||..|++ ||---.-
T Consensus 134 ~~~kg~~f--~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laV---------wd~~Ley 202 (447)
T KOG4497|consen 134 TNVKGYAF--HPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDNVLEY 202 (447)
T ss_pred cCceeEEE--CCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEE---------ecchhhh
Confidence 23678899 899998887765322111111110 1123444445556788999999988765 4322111
Q ss_pred EEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceee
Q 019405 292 LLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLS 337 (341)
Q Consensus 292 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 337 (341)
.+..+ +..-.+..++|+|.+++|+.|+.|+.+|+-+--+-+++.
T Consensus 203 kv~aY--e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~ 246 (447)
T KOG4497|consen 203 KVYAY--ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFG 246 (447)
T ss_pred eeeee--eeccceeEEEeccccceEEeeccchhhhhhceeeeeehh
Confidence 11122 213568889999999999999999999987655544443
No 235
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=4e-11 Score=104.50 Aligned_cols=214 Identities=12% Similarity=0.058 Sum_probs=131.5
Q ss_pred CeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcc---cceeEEEEeeecccccccCC
Q 019405 75 GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT---KGKASMRSIEVTKVSAESSC 151 (341)
Q Consensus 75 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~g~~~i~~~~~~~~~~~~~~ 151 (341)
..|.+||.... ....+.. +...+....|.+... .++..+. ...+.+|++....
T Consensus 184 ~~l~i~D~~g~-~~~~lt~--------~~~~v~~p~wSpDg~--------~la~~s~~~~~~~l~~~dl~~g~------- 239 (433)
T PRK04922 184 YALQVADSDGY-NPQTILR--------SAEPILSPAWSPDGK--------KLAYVSFERGRSAIYVQDLATGQ------- 239 (433)
T ss_pred EEEEEECCCCC-CceEeec--------CCCccccccCCCCCC--------EEEEEecCCCCcEEEEEECCCCC-------
Confidence 46899998543 3333332 223455555555444 5555442 2457777764322
Q ss_pred ceEEEEEeecCCceEEEEecCCCCEEEE-eeCCC--eEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCC
Q 019405 152 STVKSWNVCASGTIAFSKVDISEKFSLF-GGKGV--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR 228 (341)
Q Consensus 152 ~~v~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 228 (341)
...+-. ..+.....+|+|+|+.++. .+.++ .|++||+.+++... +..+. ......+| +|+++
T Consensus 240 -~~~l~~--~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt~~~---------~~~~~~~~--spDG~ 304 (433)
T PRK04922 240 -RELVAS--FRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR-LTNHF---------GIDTEPTW--APDGK 304 (433)
T ss_pred -EEEecc--CCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE-CccCC---------CCccceEE--CCCCC
Confidence 111211 2234457899999987764 44444 59999998876433 33221 12345688 89999
Q ss_pred EEEEEeC-CCe--EEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCC---CEEEEECCCCeEEeEEeccccC
Q 019405 229 KFVAGTN-DHQ--VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG---DLASVDIRTGKLLGCFIGKCSG 302 (341)
Q Consensus 229 ~l~~~~~-d~~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg---~i~iwd~~~~~~~~~~~~~~~~ 302 (341)
+|+..+. ++. |+++|+.+++ ...+..+.......+|+|+|++|+..+.++ .|.+||+.+++.. .+. + ..
T Consensus 305 ~l~f~sd~~g~~~iy~~dl~~g~--~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~-~~ 379 (433)
T PRK04922 305 SIYFTSDRGGRPQIYRVAASGGS--AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-P-GS 379 (433)
T ss_pred EEEEEECCCCCceEEEEECCCCC--eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-C-CC
Confidence 8887664 444 6666776644 333333434455789999999988765443 5999999888765 332 2 22
Q ss_pred ceeEEEecCCCCEEEEEeCC---CcEEEEEcCC
Q 019405 303 SIRSIARHPTLPIIASCGLD---SYLRFWDIKT 332 (341)
Q Consensus 303 ~i~~~~~~~~~~~l~s~~~d---g~v~iwd~~~ 332 (341)
......|+|||++|+..+.+ +.|.++++..
T Consensus 380 ~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 380 LDESPSFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred CCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 45577999999987776653 3678888854
No 236
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=8.4e-11 Score=98.47 Aligned_cols=133 Identities=17% Similarity=0.259 Sum_probs=99.5
Q ss_pred eEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEE--EeCCCeEEEEEcCCCCceeEEEEecCCCeE
Q 019405 185 EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA--GTNDHQVRLYDTSAQRRPVMSFDFRETPIK 262 (341)
Q Consensus 185 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~--~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~ 262 (341)
+++++++........+. ..++|.++.| +++++-+++ |-.-..+.|||++. . ++..+ .+++-+
T Consensus 252 ~Lyll~t~g~s~~V~L~----------k~GPVhdv~W--~~s~~EF~VvyGfMPAkvtifnlr~-~-~v~df--~egpRN 315 (566)
T KOG2315|consen 252 TLYLLATQGESVSVPLL----------KEGPVHDVTW--SPSGREFAVVYGFMPAKVTIFNLRG-K-PVFDF--PEGPRN 315 (566)
T ss_pred eEEEEEecCceEEEecC----------CCCCceEEEE--CCCCCEEEEEEecccceEEEEcCCC-C-EeEeC--CCCCcc
Confidence 57777766333332232 2377999999 788866655 55677899999885 2 35444 567888
Q ss_pred EEEEcCCCceEEEEeC---CCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEe------CCCcEEEEEcCCC
Q 019405 263 AVAEEPDSFNIYIGNG---SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG------LDSYLRFWDIKTR 333 (341)
Q Consensus 263 ~~~~~~~~~~l~~g~~---dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~------~dg~v~iwd~~~~ 333 (341)
++-|+|.|++|+.++- .|.|.+||+.+.+++..+... .-+-..|+|||++|+|+. .|+.++||+.. |
T Consensus 316 ~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~---~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G 391 (566)
T KOG2315|consen 316 TAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA---NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-G 391 (566)
T ss_pred ceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC---CceEEEEcCCCcEEEEEeccccEEecCCeEEEEec-C
Confidence 9999999999887765 488999999999999888764 345578999999999886 46889999985 6
Q ss_pred ceee
Q 019405 334 QLLS 337 (341)
Q Consensus 334 ~~~~ 337 (341)
..++
T Consensus 392 ~~l~ 395 (566)
T KOG2315|consen 392 SLLH 395 (566)
T ss_pred ceee
Confidence 5554
No 237
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=6.9e-11 Score=102.63 Aligned_cols=218 Identities=12% Similarity=0.027 Sum_probs=131.4
Q ss_pred CCCCCceeEEEeccCCCCCceEEEEc---cCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccccccc
Q 019405 47 DPHSSNCVLAASIDDSQNDPLLAVAR---KNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS 123 (341)
Q Consensus 47 ~~~~~~~~~~~s~~~~~~~~~l~~~~---~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (341)
.+...+...+||+|+. .|+..+ .+..|.+|++.+++....... .+......|.+...
T Consensus 196 ~~~~~~~~p~wSPDG~----~la~~s~~~g~~~i~i~dl~~G~~~~l~~~---------~~~~~~~~~SPDG~------- 255 (429)
T PRK03629 196 RSPQPLMSPAWSPDGS----KLAYVTFESGRSALVIQTLANGAVRQVASF---------PRHNGAPAFSPDGS------- 255 (429)
T ss_pred cCCCceeeeEEcCCCC----EEEEEEecCCCcEEEEEECCCCCeEEccCC---------CCCcCCeEECCCCC-------
Confidence 3445566666666655 777643 245799999987754322111 01122334444333
Q ss_pred ceeE-EEcccce--eEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCC-C--eEEEEECCCCcee
Q 019405 124 RTLL-TCTTKGK--ASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKG-V--EVNVWDLDKCEKI 197 (341)
Q Consensus 124 ~~l~-~~~~~g~--~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~--~v~i~d~~~~~~~ 197 (341)
.++ +...+|. +.+|+++.. .++... .....+....|+||++.|+..+.+ + .|+++|+.+++..
T Consensus 256 -~La~~~~~~g~~~I~~~d~~tg---------~~~~lt-~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~ 324 (429)
T PRK03629 256 -KLAFALSKTGSLNLYVMDLASG---------QIRQVT-DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ 324 (429)
T ss_pred -EEEEEEcCCCCcEEEEEECCCC---------CEEEcc-CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE
Confidence 444 3344554 666665432 222211 123456788999999988877654 3 4555677665443
Q ss_pred eecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCC---CeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEE
Q 019405 198 WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND---HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIY 274 (341)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 274 (341)
.+.... .......| +|++++|+..+.+ ..|.+||+.+++ ...+... .......|+|||+.|+
T Consensus 325 -~lt~~~---------~~~~~~~~--SpDG~~Ia~~~~~~g~~~I~~~dl~~g~--~~~Lt~~-~~~~~p~~SpDG~~i~ 389 (429)
T PRK03629 325 -RITWEG---------SQNQDADV--SSDGKFMVMVSSNGGQQHIAKQDLATGG--VQVLTDT-FLDETPSIAPNGTMVI 389 (429)
T ss_pred -EeecCC---------CCccCEEE--CCCCCEEEEEEccCCCceEEEEECCCCC--eEEeCCC-CCCCCceECCCCCEEE
Confidence 222211 22445678 8999998876543 358889988765 3344322 2234678999999999
Q ss_pred EEeCCCC---EEEEECCCCeEEeEEeccccCceeEEEecCC
Q 019405 275 IGNGSGD---LASVDIRTGKLLGCFIGKCSGSIRSIARHPT 312 (341)
Q Consensus 275 ~g~~dg~---i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~ 312 (341)
.++.++. ++++++ +|+....+..+ .+.+...+|+|-
T Consensus 390 ~~s~~~~~~~l~~~~~-~G~~~~~l~~~-~~~~~~p~Wsp~ 428 (429)
T PRK03629 390 YSSSQGMGSVLNLVST-DGRFKARLPAT-DGQVKFPAWSPY 428 (429)
T ss_pred EEEcCCCceEEEEEEC-CCCCeEECccC-CCCcCCcccCCC
Confidence 8887764 677777 46666677776 778899999873
No 238
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=1e-10 Score=101.66 Aligned_cols=223 Identities=14% Similarity=0.099 Sum_probs=132.1
Q ss_pred ccCCCCCceeEEEeccCCCCCceEEEEccC---CeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccccc
Q 019405 45 WGDPHSSNCVLAASIDDSQNDPLLAVARKN---GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSS 121 (341)
Q Consensus 45 ~~~~~~~~~~~~~s~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (341)
+..+...+...+|++|+. .|+..+.+ ..|.+||+.+++... +... .+......|.+....
T Consensus 191 l~~~~~~v~~p~wSPDG~----~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~--------~g~~~~~~~SPDG~~---- 253 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGT----KLAYVSFESKKPVVYVHDLATGRRRV-VANF--------KGSNSAPAWSPDGRT---- 253 (427)
T ss_pred eccCCCCcccceEcCCCC----EEEEEEccCCCcEEEEEECCCCCEEE-eecC--------CCCccceEECCCCCE----
Confidence 334555666666666554 77776532 459999998876532 2211 122333444444331
Q ss_pred ccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeC-CCeEEEE--ECCCCceee
Q 019405 122 RSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK-GVEVNVW--DLDKCEKIW 198 (341)
Q Consensus 122 ~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~v~i~--d~~~~~~~~ 198 (341)
.+++...+|...||.++... +.++... .+........|+|||+.|+..+. ++...+| ++.+++...
T Consensus 254 ---la~~~~~~g~~~Iy~~d~~~-------~~~~~lt-~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~ 322 (427)
T PRK02889 254 ---LAVALSRDGNSQIYTVNADG-------SGLRRLT-QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR 322 (427)
T ss_pred ---EEEEEccCCCceEEEEECCC-------CCcEECC-CCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE
Confidence 34466778888888775321 1122221 12233456789999998886654 3555555 444443222
Q ss_pred ecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCC---eEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEE
Q 019405 199 TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH---QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYI 275 (341)
Q Consensus 199 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 275 (341)
+.... .......| +|+|++|+..+.++ .|.+||+.+++ ...+... .......|+|+|+.|+.
T Consensus 323 -lt~~g---------~~~~~~~~--SpDG~~Ia~~s~~~g~~~I~v~d~~~g~--~~~lt~~-~~~~~p~~spdg~~l~~ 387 (427)
T PRK02889 323 -VTFTG---------SYNTSPRI--SPDGKLLAYISRVGGAFKLYVQDLATGQ--VTALTDT-TRDESPSFAPNGRYILY 387 (427)
T ss_pred -EecCC---------CCcCceEE--CCCCCEEEEEEccCCcEEEEEEECCCCC--eEEccCC-CCccCceECCCCCEEEE
Confidence 11111 11234578 89999998776554 69999998765 3333322 23467899999998887
Q ss_pred EeCCC---CEEEEECCCCeEEeEEeccccCceeEEEecCC
Q 019405 276 GNGSG---DLASVDIRTGKLLGCFIGKCSGSIRSIARHPT 312 (341)
Q Consensus 276 g~~dg---~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~ 312 (341)
.+.++ .+++.++ +++....+..+ .+.+...+|+|-
T Consensus 388 ~~~~~g~~~l~~~~~-~g~~~~~l~~~-~g~~~~p~wsp~ 425 (427)
T PRK02889 388 ATQQGGRSVLAAVSS-DGRIKQRLSVQ-GGDVREPSWGPF 425 (427)
T ss_pred EEecCCCEEEEEEEC-CCCceEEeecC-CCCCCCCccCCC
Confidence 76543 3666666 46666666655 677888888874
No 239
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.45 E-value=3.6e-10 Score=97.07 Aligned_cols=277 Identities=13% Similarity=0.138 Sum_probs=163.6
Q ss_pred CCceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheee
Q 019405 13 PPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS 92 (341)
Q Consensus 13 ~~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 92 (341)
..-+++.++.+|.+..++..+. .-.|+. .++. ......+ ..+..+++++.+|.+..+|..+|+.+....
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG-~~~W~~--~~~~--~~~~~p~------v~~~~v~v~~~~g~l~ald~~tG~~~W~~~ 132 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETG-KRLWRV--DLDE--RLSGGVG------ADGGLVFVGTEKGEVIALDAEDGKELWRAK 132 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCC-cEeeee--cCCC--CcccceE------EcCCEEEEEcCCCEEEEEECCCCcEeeeec
Confidence 3456788888888888887665 112211 2211 1111111 123468888999999999999998876654
Q ss_pred ccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEE--e
Q 019405 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSK--V 170 (341)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~--~ 170 (341)
.. +.+.+.... .++ .++.+..+|.+..++....+ .+|..........+. .
T Consensus 133 ~~---------~~~~~~p~v-~~~--------~v~v~~~~g~l~a~d~~tG~----------~~W~~~~~~~~~~~~~~~ 184 (377)
T TIGR03300 133 LS---------SEVLSPPLV-ANG--------LVVVRTNDGRLTALDAATGE----------RLWTYSRVTPALTLRGSA 184 (377)
T ss_pred cC---------ceeecCCEE-ECC--------EEEEECCCCeEEEEEcCCCc----------eeeEEccCCCceeecCCC
Confidence 31 112111111 112 66777788888888875433 345443322211111 0
Q ss_pred cC--CCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCc-cCccCCeee-eEEEEEecCCCCEEEEEeCCCeEEEEEcCC
Q 019405 171 DI--SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNS-LGIFTPTWF-TSAAFLSIDDHRKFVAGTNDHQVRLYDTSA 246 (341)
Q Consensus 171 ~~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~v-~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 246 (341)
+| .+..++.+..++.+..+|.++++.++......... ........+ ....+ .+..+++++.++.++.||..+
T Consensus 185 sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~----~~~~vy~~~~~g~l~a~d~~t 260 (377)
T TIGR03300 185 SPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV----DGGQVYAVSYQGRVAALDLRS 260 (377)
T ss_pred CCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE----ECCEEEEEEcCCEEEEEECCC
Confidence 01 13467778888999999999998887644221100 000000000 11112 345788888899999999998
Q ss_pred CCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEE
Q 019405 247 QRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLR 326 (341)
Q Consensus 247 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~ 326 (341)
++. +-.... ........ .+..+++++.+|.++.+|..+++.+................ .+..|++++.||.|+
T Consensus 261 G~~-~W~~~~--~~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~ 333 (377)
T TIGR03300 261 GRV-LWKRDA--SSYQGPAV--DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLH 333 (377)
T ss_pred CcE-EEeecc--CCccCceE--eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEE
Confidence 764 333321 11122222 45678888899999999999998876653210112222222 466888999999999
Q ss_pred EEEcCCCceeeee
Q 019405 327 FWDIKTRQLLSAV 339 (341)
Q Consensus 327 iwd~~~~~~~~~~ 339 (341)
++|..+|+.+.++
T Consensus 334 ~~d~~tG~~~~~~ 346 (377)
T TIGR03300 334 WLSREDGSFVARL 346 (377)
T ss_pred EEECCCCCEEEEE
Confidence 9999999988765
No 240
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=2.7e-11 Score=105.30 Aligned_cols=161 Identities=16% Similarity=0.057 Sum_probs=107.1
Q ss_pred cCCceEEEEecCCCCEEEEeeCC---CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEE-EEeCC
Q 019405 161 ASGTIAFSKVDISEKFSLFGGKG---VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV-AGTND 236 (341)
Q Consensus 161 ~~~~i~~~~~~~~~~~l~~~~~d---~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-~~~~d 236 (341)
+...+.+.+|+||++.|+..+.+ ..|.+||+.+++........ ......+| +|+++.|+ +.+.+
T Consensus 194 ~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~----------g~~~~~~~--SPDG~~la~~~~~~ 261 (427)
T PRK02889 194 SPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFK----------GSNSAPAW--SPDGRTLAVALSRD 261 (427)
T ss_pred CCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCC----------CCccceEE--CCCCCEEEEEEccC
Confidence 45678899999999999876643 35999999888654322111 22456788 89998887 45677
Q ss_pred CeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeC-CCCEEEE--ECCCCeEEeEEeccccCceeEEEecCCC
Q 019405 237 HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SGDLASV--DIRTGKLLGCFIGKCSGSIRSIARHPTL 313 (341)
Q Consensus 237 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-dg~i~iw--d~~~~~~~~~~~~~~~~~i~~~~~~~~~ 313 (341)
+...+|.+.........+..+........|+|||+.|+..+. ++...|| ++.+++... +... ........|+|+|
T Consensus 262 g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~-g~~~~~~~~SpDG 339 (427)
T PRK02889 262 GNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFT-GSYNTSPRISPDG 339 (427)
T ss_pred CCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecC-CCCcCceEECCCC
Confidence 776666553221124555555555667899999998876554 4555555 444444322 2222 2334568899999
Q ss_pred CEEEEEeCCC---cEEEEEcCCCce
Q 019405 314 PIIASCGLDS---YLRFWDIKTRQL 335 (341)
Q Consensus 314 ~~l~s~~~dg---~v~iwd~~~~~~ 335 (341)
++|+..+.++ .|.+||+.+++.
T Consensus 340 ~~Ia~~s~~~g~~~I~v~d~~~g~~ 364 (427)
T PRK02889 340 KLLAYISRVGGAFKLYVQDLATGQV 364 (427)
T ss_pred CEEEEEEccCCcEEEEEEECCCCCe
Confidence 9998777654 699999988764
No 241
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.45 E-value=5.6e-13 Score=124.71 Aligned_cols=180 Identities=14% Similarity=0.187 Sum_probs=144.9
Q ss_pred eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCC
Q 019405 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP 204 (341)
Q Consensus 125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~ 204 (341)
..++++.||.+++|.... ...|..|+......++.+.|+.+|+.+..+..||.+.+|.+. .+.....+.|.
T Consensus 2222 ~Yltgs~dgsv~~~~w~~--------~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchn 2292 (2439)
T KOG1064|consen 2222 YYLTGSQDGSVRMFEWGH--------GQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHN 2292 (2439)
T ss_pred eEEecCCCceEEEEeccC--------CCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCC
Confidence 899999999999998753 348889998777889999999999999999999999999986 44455555543
Q ss_pred CCccCccCCeeeeEEEEEecCCCCEEEEEe---CCCeEEEEEcCCC--CceeEEEEecCCCeEEEEEcCCCceEEEEeCC
Q 019405 205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAGT---NDHQVRLYDTSAQ--RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS 279 (341)
Q Consensus 205 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d 279 (341)
.......|. +..+++++ .++.+.+||.... ...+. +.|.+.++++++-|..++|++|+.+
T Consensus 2293 ---------k~~~Df~Fi----~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~ 2357 (2439)
T KOG1064|consen 2293 ---------KALSDFRFI----GSLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRK 2357 (2439)
T ss_pred ---------ccccceeee----ehhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCc
Confidence 335666773 25666654 5789999996542 22233 7799999999999999999999999
Q ss_pred CCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 280 GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 280 g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
|.|++||++..++++.++. ++ ...++++++..|.++||++..-..+.++
T Consensus 2358 G~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2358 GEVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred CcEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccccchhhcC
Confidence 9999999999888877753 44 5678999999999999999887766654
No 242
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.44 E-value=9.2e-11 Score=90.62 Aligned_cols=256 Identities=14% Similarity=0.163 Sum_probs=157.5
Q ss_pred CCceeEEEeccCCCCCc-eEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEE
Q 019405 50 SSNCVLAASIDDSQNDP-LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLT 128 (341)
Q Consensus 50 ~~~~~~~~s~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 128 (341)
..+..+.++..... |. .|+-+..+|.|.++..........++.......+. ....++.+-.... .+++
T Consensus 70 s~~~dm~w~~~~~~-g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~--~~~lslD~~~~~~--------~i~v 138 (339)
T KOG0280|consen 70 STEFDMLWRIRETD-GDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISV--VEALSLDISTSGT--------KIFV 138 (339)
T ss_pred cccceeeeeeccCC-ccceeeeccccceEEEEeeccceeeeeecccchhhhhh--eeeeEEEeeccCc--------eEEE
Confidence 33444455543332 22 47778889999999876544444444322111110 1233444444444 6888
Q ss_pred EcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecC-CCCEEEEeeCCCeEEEEECCC-CceeeecCCCCCC
Q 019405 129 CTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDK-CEKIWTAKPPPKN 206 (341)
Q Consensus 129 ~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~i~d~~~-~~~~~~~~~~~~~ 206 (341)
...+|.+.+-+..... -..+..|.. |.-+++...|+. +.+++++|+.|+.+..||++. ++.++. +...
T Consensus 139 s~s~G~~~~v~~t~~~------le~vq~wk~-He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~--n~kv- 208 (339)
T KOG0280|consen 139 SDSRGSISGVYETEMV------LEKVQTWKV-HEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH--NSKV- 208 (339)
T ss_pred EcCCCcEEEEecceee------eeecccccc-cceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee--ccee-
Confidence 8888888744432211 113345654 455677777764 457899999999999999983 333332 1111
Q ss_pred ccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCc-eEEEEeCCCCEEEE
Q 019405 207 SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSF-NIYIGNGSGDLASV 285 (341)
Q Consensus 207 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~g~~dg~i~iw 285 (341)
|...|.++.-. +|.+.++++|+.|..|++||.++..+|+..-. -.+.|+.+.++|.-. .+++++.-+-.+|.
T Consensus 209 -----H~~GV~SI~ss-~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~ 281 (339)
T KOG0280|consen 209 -----HTSGVVSIYSS-PPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKIL 281 (339)
T ss_pred -----eecceEEEecC-CCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEE
Confidence 33457777664 56788999999999999999998777766544 337899999999542 33344444456777
Q ss_pred ECCCCe-----EEeEEeccccCceeEEEecCCCCEEEEEe-CCCcEE-EEEcCCCc
Q 019405 286 DIRTGK-----LLGCFIGKCSGSIRSIARHPTLPIIASCG-LDSYLR-FWDIKTRQ 334 (341)
Q Consensus 286 d~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-~dg~v~-iwd~~~~~ 334 (341)
+...+. .....+.| .+-.+.-.|.....+|+|++ .|..++ +|-..++.
T Consensus 282 ~~~~~~~e~~~~~~s~~~h-dSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 282 DSSDKVLEFQIVLPSDKIH-DSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred Eecccccchheeeeccccc-cceeeccccccccceeeeeeccccceeeeeeeccCC
Confidence 766542 23444555 66677777765556788876 577755 88666654
No 243
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.43 E-value=2.5e-10 Score=89.68 Aligned_cols=272 Identities=12% Similarity=0.103 Sum_probs=163.6
Q ss_pred eeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCC
Q 019405 17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGD 96 (341)
Q Consensus 17 ~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 96 (341)
+.....++.|.+|++... +-.-+..+.+.+...+.+|+|+.. +|.+...|-+|.||.+.+.+....-..
T Consensus 64 lC~~yk~~~vqvwsl~Qp-----ew~ckIdeg~agls~~~WSPdgrh---iL~tseF~lriTVWSL~t~~~~~~~~p--- 132 (447)
T KOG4497|consen 64 LCVAYKDPKVQVWSLVQP-----EWYCKIDEGQAGLSSISWSPDGRH---ILLTSEFDLRITVWSLNTQKGYLLPHP--- 132 (447)
T ss_pred eeeeeccceEEEEEeecc-----eeEEEeccCCCcceeeeECCCcce---EeeeecceeEEEEEEeccceeEEeccc---
Confidence 344568889999999875 333367777888888899888852 577788899999999977543211000
Q ss_pred CCCCCCCCceeeEeeeeccccccccccceeEEEccc----------------------ceeEEEEeeecccccccCCceE
Q 019405 97 SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK----------------------GKASMRSIEVTKVSAESSCSTV 154 (341)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------------------g~~~i~~~~~~~~~~~~~~~~v 154 (341)
...+.... +.++.. ..+.++.- .++-+-.++..+ ++.-+
T Consensus 133 ------K~~~kg~~-f~~dg~-------f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsP-----dg~~l 193 (447)
T KOG4497|consen 133 ------KTNVKGYA-FHPDGQ-------FCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSP-----DGNWL 193 (447)
T ss_pred ------ccCceeEE-ECCCCc-------eeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECC-----CCcEE
Confidence 00011111 111110 11111000 001111111111 12233
Q ss_pred EEEEe---------ecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeee--------------------------
Q 019405 155 KSWNV---------CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT-------------------------- 199 (341)
Q Consensus 155 ~~~~~---------~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~-------------------------- 199 (341)
.+|+. +-+-.+..++|+|.+++|++|+.|+.+++.+--+-+...+
T Consensus 194 aVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~ 273 (447)
T KOG4497|consen 194 AVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLL 273 (447)
T ss_pred EEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhc
Confidence 33332 1234688899999999999999999988765432111000
Q ss_pred -----cCCCC--------C----------------C-ccCccC-CeeeeEEEEEecCCCCEEEEEeCC--CeEEEEEcCC
Q 019405 200 -----AKPPP--------K----------------N-SLGIFT-PTWFTSAAFLSIDDHRKFVAGTND--HQVRLYDTSA 246 (341)
Q Consensus 200 -----~~~~~--------~----------------~-~~~~~~-~~~v~~~~~~~~~~~~~l~~~~~d--~~i~iwd~~~ 246 (341)
+.... . . ..+..+ ...+.-++| ++|..++++-... +.+-+||++.
T Consensus 274 ~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~laf--s~Ds~y~aTrnd~~PnalW~Wdlq~ 351 (447)
T KOG4497|consen 274 HHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAF--SCDSTYAATRNDKYPNALWLWDLQN 351 (447)
T ss_pred ccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeee--cCCceEEeeecCCCCceEEEEechh
Confidence 00000 0 0 000000 123567788 8888888876432 5689999997
Q ss_pred CCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCc
Q 019405 247 QRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSY 324 (341)
Q Consensus 247 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~ 324 (341)
.+ +...-....+|....|+|....|+.+.....+++|...-...+. .+.. .-.|..+.|+-+|..++..+.|..
T Consensus 352 l~--l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~-vP~~-GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 352 LK--LHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVG-VPKK-GFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred hh--hhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEe-cCCC-CceeeeEEecCCCcEEEEEcCCce
Confidence 44 44444456799999999999888888888889999886544443 3333 468999999999999999999864
No 244
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.43 E-value=1.1e-10 Score=92.03 Aligned_cols=226 Identities=12% Similarity=0.154 Sum_probs=145.1
Q ss_pred eeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCC----Ccchheee
Q 019405 17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN----GDLRVAIS 92 (341)
Q Consensus 17 ~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~----~~~~~~~~ 92 (341)
+++.+.|-.+|+|--.+. ...|.-+.. .-..++.++.+..... .|++|-.+|++.-+.+.. ....+.+.
T Consensus 39 v~~~s~drtvrv~lkrds-~q~wpsI~~--~mP~~~~~~~y~~e~~----~L~vg~~ngtvtefs~sedfnkm~~~r~~~ 111 (404)
T KOG1409|consen 39 VISVSEDRTVRVWLKRDS-GQYWPSIYH--YMPSPCSAMEYVSESR----RLYVGQDNGTVTEFALSEDFNKMTFLKDYL 111 (404)
T ss_pred eEEccccceeeeEEeccc-cccCchhhh--hCCCCceEeeeeccce----EEEEEEecceEEEEEhhhhhhhcchhhhhh
Confidence 678889999999987765 232322211 1345566666665555 799999999999887642 12223333
Q ss_pred ccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecC
Q 019405 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI 172 (341)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~ 172 (341)
. |...+..+.+..... .+++.+.|..+.--..+++. .+--+...... ..+.+.-
T Consensus 112 ~--------h~~~v~~~if~~~~e--------~V~s~~~dk~~~~hc~e~~~--------~lg~Y~~~~~~--t~~~~d~ 165 (404)
T KOG1409|consen 112 A--------HQARVSAIVFSLTHE--------WVLSTGKDKQFAWHCTESGN--------RLGGYNFETPA--SALQFDA 165 (404)
T ss_pred h--------hhcceeeEEecCCce--------eEEEeccccceEEEeeccCC--------cccceEeeccC--CCCceee
Confidence 3 334555555444444 67777776655433333222 11112211110 1111111
Q ss_pred CCCEEEEeeCCCeEEEEECC--CCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCce
Q 019405 173 SEKFSLFGGKGVEVNVWDLD--KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP 250 (341)
Q Consensus 173 ~~~~l~~~~~d~~v~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 250 (341)
.+...|-..|.|..-.+. ....+..+..+. +.+.+++| .+...+|.+|..|..+.+||+-..+..
T Consensus 166 --~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~---------~~~~~l~W--d~~~~~LfSg~~d~~vi~wdigg~~g~ 232 (404)
T KOG1409|consen 166 --LYAFVGDHSGQITMLKLEQNGCQLITTFNGHT---------GEVTCLKW--DPGQRLLFSGASDHSVIMWDIGGRKGT 232 (404)
T ss_pred --EEEEecccccceEEEEEeecCCceEEEEcCcc---------cceEEEEE--cCCCcEEEeccccCceEEEeccCCcce
Confidence 144455556666555443 344556666654 66999999 888899999999999999999876655
Q ss_pred eEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECC
Q 019405 251 VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR 288 (341)
Q Consensus 251 ~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~ 288 (341)
...+.+|...|..+..-+.-+.+++++.||.|.+|+..
T Consensus 233 ~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 233 AYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred eeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence 67788899999999888888899999999999999875
No 245
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.42 E-value=1.3e-10 Score=88.74 Aligned_cols=235 Identities=11% Similarity=0.043 Sum_probs=152.6
Q ss_pred eEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccc
Q 019405 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS 146 (341)
Q Consensus 67 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~ 146 (341)
+||.|+..|...+|...+.+....+-.. +...+.-....... ...+..++.|+++++..++.....
T Consensus 86 ~la~gG~~g~fd~~~~~tn~~h~~~cd~-------snn~v~~~~r~cd~-------~~~~~i~sndht~k~~~~~~~s~~ 151 (344)
T KOG4532|consen 86 TLADGGASGQFDLFACNTNDGHLYQCDV-------SNNDVTLVKRYCDL-------KFPLNIASNDHTGKTMVVSGDSNK 151 (344)
T ss_pred EEEeccccceeeeecccCcccceeeecc-------cccchhhhhhhccc-------ccceeeccCCcceeEEEEecCccc
Confidence 6999999999999999865543222210 11111111111111 116788889999999988754422
Q ss_pred cccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCC-CceeeecCCCCCCccCccCCeeeeEEEEEecC
Q 019405 147 AESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDK-CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID 225 (341)
Q Consensus 147 ~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 225 (341)
. .+.. . .-.+.++.+++|++++++.+....|..|.+.. ++.+........ ...-.+..| +.
T Consensus 152 ~-----~~h~--~--~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t-------~D~gF~~S~--s~ 213 (344)
T KOG4532|consen 152 F-----AVHN--Q--NLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPT-------SDHGFYNSF--SE 213 (344)
T ss_pred c-----eeec--c--ccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEeccc-------CCCceeeee--cc
Confidence 1 1111 1 02377889999999999999999999999875 333332111111 122456677 77
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCceeEEE----EecCCCeEEEEEcCCC--ceEEEEeCCCCEEEEECCCCeEEeEEe--
Q 019405 226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSF----DFRETPIKAVAEEPDS--FNIYIGNGSGDLASVDIRTGKLLGCFI-- 297 (341)
Q Consensus 226 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~----~~~~~~v~~~~~~~~~--~~l~~g~~dg~i~iwd~~~~~~~~~~~-- 297 (341)
....+|++..||++.|||++....|.... ..|.++++.+.|++.| .+|+..-.-+.+.+.|+++++....+.
T Consensus 214 ~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~ 293 (344)
T KOG4532|consen 214 NDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIP 293 (344)
T ss_pred CcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecC
Confidence 88899999999999999999865544332 3388999999999866 345554455789999999886544332
Q ss_pred -----ccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCc
Q 019405 298 -----GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ 334 (341)
Q Consensus 298 -----~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 334 (341)
.|....|..-.|+.++..+...+++ .+.-|++.+..
T Consensus 294 ~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~srs 334 (344)
T KOG4532|consen 294 DDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILSRS 334 (344)
T ss_pred ccccccccccccccccccCCCcccccccch-hhheeeccccc
Confidence 2323448888888888766666555 45667666543
No 246
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=4e-12 Score=104.43 Aligned_cols=253 Identities=9% Similarity=0.024 Sum_probs=177.0
Q ss_pred CCCCCceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchh
Q 019405 10 PGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRV 89 (341)
Q Consensus 10 ~~~~~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~ 89 (341)
|.+....+++++.||.+++=.+-.. |..+-..++..|.+++..++.-++... -|.+++.|+.+.-.|+..+....
T Consensus 195 P~s~d~ti~~~s~dgqvr~s~i~~t--~~~e~t~rl~~h~g~vhklav~p~sp~---~f~S~geD~~v~~~Dlr~~~pa~ 269 (559)
T KOG1334|consen 195 PFSGDRTIVTSSRDGQVRVSEILET--GYVENTKRLAPHEGPVHKLAVEPDSPK---PFLSCGEDAVVFHIDLRQDVPAE 269 (559)
T ss_pred CCCCCcCceeccccCceeeeeeccc--cceecceecccccCccceeeecCCCCC---cccccccccceeeeeeccCCccc
Confidence 3444556889999999998887765 433434567789999999997776653 38999999999999998876655
Q ss_pred eeeccCCCCCCCCCC---ceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEe-----ec
Q 019405 90 AISNAGDSGAQPEDD---GIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV-----CA 161 (341)
Q Consensus 90 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~-----~~ 161 (341)
.+.... .... ....++..+... ..+++++.|-.+++|+...-.... ..+.+..+-. ..
T Consensus 270 ~~~cr~-----~~~~~~v~L~~Ia~~P~nt-------~~faVgG~dqf~RvYD~R~~~~e~--~n~~~~~f~p~hl~~d~ 335 (559)
T KOG1334|consen 270 KFVCRE-----ADEKERVGLYTIAVDPRNT-------NEFAVGGSDQFARVYDQRRIDKEE--NNGVLDKFCPHHLVEDD 335 (559)
T ss_pred eeeeec-----cCCccceeeeeEecCCCCc-------cccccCChhhhhhhhcccchhhcc--ccchhhhcCCccccccC
Confidence 554311 1112 222333333332 288999999999999876543321 1111222211 22
Q ss_pred CCceEEEEecCCCCEEEEeeCCCeEEEEECCC--C----------ceeee-cCCCCCCccCccCCeeeeEEEEEecCCCC
Q 019405 162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDK--C----------EKIWT-AKPPPKNSLGIFTPTWFTSAAFLSIDDHR 228 (341)
Q Consensus 162 ~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~--~----------~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 228 (341)
...|++++++.++.-+.+...|-.|+++.-.- | ..... +++|.+. ..|..+-|. .|...
T Consensus 336 ~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~-------~TVKgVNFf-GPrsE 407 (559)
T KOG1334|consen 336 PVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNS-------RTVKGVNFF-GPRSE 407 (559)
T ss_pred cccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccc-------cccceeeec-cCccc
Confidence 34689999998887777788888899995432 2 11222 3444432 348888887 78899
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCC
Q 019405 229 KFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG 290 (341)
Q Consensus 229 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~ 290 (341)
++++|+.=|.|.||+-.+++. ++.+.+...-|+|+.=+|.-..||+.+-|..|+||...+.
T Consensus 408 yVvSGSDCGhIFiW~K~t~ei-i~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 408 YVVSGSDCGHIFIWDKKTGEI-IRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred eEEecCccceEEEEecchhHH-HHHhhcccceEeccCCCCCCchhhccCCccceeeecCCcc
Confidence 999999999999999888664 7777776668999999999999999999999999987543
No 247
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=7.7e-11 Score=102.77 Aligned_cols=160 Identities=14% Similarity=0.085 Sum_probs=110.4
Q ss_pred cCCceEEEEecCCCCEEEEeeCC---CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEE-EeCC
Q 019405 161 ASGTIAFSKVDISEKFSLFGGKG---VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA-GTND 236 (341)
Q Consensus 161 ~~~~i~~~~~~~~~~~l~~~~~d---~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-~~~d 236 (341)
+...+...+|+||++.|+..+.+ ..|++||+.+++..... ... .......| +|+++.|+. .+.+
T Consensus 202 ~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~-~~~---------g~~~~~~~--SpDG~~l~~~~s~~ 269 (433)
T PRK04922 202 SAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVA-SFR---------GINGAPSF--SPDGRRLALTLSRD 269 (433)
T ss_pred CCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEec-cCC---------CCccCceE--CCCCCEEEEEEeCC
Confidence 34578899999999999987643 46999999877654322 111 12346688 899987764 4455
Q ss_pred C--eEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeC-CCC--EEEEECCCCeEEeEEeccccCceeEEEecC
Q 019405 237 H--QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SGD--LASVDIRTGKLLGCFIGKCSGSIRSIARHP 311 (341)
Q Consensus 237 ~--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-dg~--i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~ 311 (341)
+ .|++||+.+++ +..+..+.......+|+|+|+.|+..+. +|. |+++|+.+++... +... ......++|+|
T Consensus 270 g~~~Iy~~d~~~g~--~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~-g~~~~~~~~Sp 345 (433)
T PRK04922 270 GNPEIYVMDLGSRQ--LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQ-GNYNARASVSP 345 (433)
T ss_pred CCceEEEEECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecC-CCCccCEEECC
Confidence 5 59999998765 4455555555567899999998887663 444 7777877765432 2222 33455789999
Q ss_pred CCCEEEEEeCCC---cEEEEEcCCCcee
Q 019405 312 TLPIIASCGLDS---YLRFWDIKTRQLL 336 (341)
Q Consensus 312 ~~~~l~s~~~dg---~v~iwd~~~~~~~ 336 (341)
+|++|+..+.++ .|.+||+.+++..
T Consensus 346 DG~~Ia~~~~~~~~~~I~v~d~~~g~~~ 373 (433)
T PRK04922 346 DGKKIAMVHGSGGQYRIAVMDLSTGSVR 373 (433)
T ss_pred CCCEEEEEECCCCceeEEEEECCCCCeE
Confidence 999888765443 6999999887643
No 248
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.40 E-value=1.8e-11 Score=109.24 Aligned_cols=188 Identities=11% Similarity=0.129 Sum_probs=141.2
Q ss_pred eEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccc
Q 019405 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS 146 (341)
Q Consensus 67 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~ 146 (341)
.++.++.++.+.+||...+....++... ......+...+-... ...++++++.-+.+.+|+....+
T Consensus 101 ~i~l~~~~ns~~i~d~~~~~~~~~i~~~-------er~~l~~~~~~g~s~-----~~~~i~~gsv~~~iivW~~~~dn-- 166 (967)
T KOG0974|consen 101 KIALVTSRNSLLIRDSKNSSVLSKIQSD-------ERCTLYSSLIIGDSA-----EELYIASGSVFGEIIVWKPHEDN-- 166 (967)
T ss_pred eEEEEEcCceEEEEecccCceehhcCCC-------ceEEEEeEEEEeccC-----cEEEEEeccccccEEEEeccccC--
Confidence 6888999999999999877766665541 111111122211111 12278888999999999986222
Q ss_pred cccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCC
Q 019405 147 AESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD 226 (341)
Q Consensus 147 ~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 226 (341)
..+ .-..|.+.|..+.++.||.++++.++|.++++|++++.+... ....+|+..+..+.| .|+
T Consensus 167 -----~p~--~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--------~~~fgHsaRvw~~~~--~~n 229 (967)
T KOG0974|consen 167 -----KPI--RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--------CTGFGHSARVWACCF--LPN 229 (967)
T ss_pred -----Ccc--eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC--------cccccccceeEEEEe--ccc
Confidence 123 345678999999999999999999999999999999877654 223457788999999 454
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceeEEEEecC-CCeEEEEEcCCCceEEEEeCCCCEEEEECCC
Q 019405 227 HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE-TPIKAVAEEPDSFNIYIGNGSGDLASVDIRT 289 (341)
Q Consensus 227 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~ 289 (341)
.+++++.|.+.++|+... .. +..+..|. ..+..++..++...+++++.|+.+++||+..
T Consensus 230 --~i~t~gedctcrvW~~~~-~~-l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 230 --RIITVGEDCTCRVWGVNG-TQ-LEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred --eeEEeccceEEEEEeccc-ce-ehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 999999999999997664 33 55676664 4689999999999999999999999999753
No 249
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=3e-10 Score=99.18 Aligned_cols=157 Identities=13% Similarity=0.067 Sum_probs=110.4
Q ss_pred cCCceEEEEecCCCCEEEEeeC---CCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEE-EEeCC
Q 019405 161 ASGTIAFSKVDISEKFSLFGGK---GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV-AGTND 236 (341)
Q Consensus 161 ~~~~i~~~~~~~~~~~l~~~~~---d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-~~~~d 236 (341)
+...+...+|+|||+.|+..+. +..|++||+.+++... +.... ..+...+| +|+++.|+ +.+.+
T Consensus 200 ~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~~~~---------g~~~~~~~--SPDG~~la~~~~~~ 267 (435)
T PRK05137 200 GSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-VGNFP---------GMTFAPRF--SPDGRKVVMSLSQG 267 (435)
T ss_pred CCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-eecCC---------CcccCcEE--CCCCCEEEEEEecC
Confidence 4567899999999999887653 4689999998876532 22211 23566788 89998876 44555
Q ss_pred Ce--EEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeC-CC--CEEEEECCCCeEEeEEeccccCceeEEEecC
Q 019405 237 HQ--VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SG--DLASVDIRTGKLLGCFIGKCSGSIRSIARHP 311 (341)
Q Consensus 237 ~~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-dg--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~ 311 (341)
+. |.+||+.+++ ...+..+........|+|+|+.|+..+. +| .|+++|+..++.. .+..+ ...+....|+|
T Consensus 268 g~~~Iy~~d~~~~~--~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~-~~~~~~~~~Sp 343 (435)
T PRK05137 268 GNTDIYTMDLRSGT--TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFG-GGRYSTPVWSP 343 (435)
T ss_pred CCceEEEEECCCCc--eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecC-CCcccCeEECC
Confidence 54 7777887754 4556656656677999999998887663 33 5888898766543 33322 45567789999
Q ss_pred CCCEEEEEeCC---CcEEEEEcCCC
Q 019405 312 TLPIIASCGLD---SYLRFWDIKTR 333 (341)
Q Consensus 312 ~~~~l~s~~~d---g~v~iwd~~~~ 333 (341)
+|+.|+..+.+ ..|.+||+.++
T Consensus 344 dG~~ia~~~~~~~~~~i~~~d~~~~ 368 (435)
T PRK05137 344 RGDLIAFTKQGGGQFSIGVMKPDGS 368 (435)
T ss_pred CCCEEEEEEcCCCceEEEEEECCCC
Confidence 99998877643 36888887654
No 250
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.39 E-value=5.8e-11 Score=93.64 Aligned_cols=256 Identities=10% Similarity=0.136 Sum_probs=173.6
Q ss_pred ceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEee-CCCCcchheeeccCCCCCCCCCCceeeEeeeeccccc
Q 019405 40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILN-PLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREE 118 (341)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (341)
.++.++.++...++....-+-.. -+++.+.|.++|||- .+.++.-..+... ...+..++.+.....
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~----gv~~~s~drtvrv~lkrds~q~wpsI~~~-------mP~~~~~~~y~~e~~-- 81 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEE----GVISVSEDRTVRVWLKRDSGQYWPSIYHY-------MPSPCSAMEYVSESR-- 81 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCC----CeEEccccceeeeEEeccccccCchhhhh-------CCCCceEeeeeccce--
Confidence 45566777777776555433332 499999999999994 4456665555442 224555555555544
Q ss_pred cccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceee
Q 019405 119 SSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIW 198 (341)
Q Consensus 119 ~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~ 198 (341)
.|+.+-.+|++.-+.+...-. ....++.|. .|...+..+-|+...+++++.+.|..+.---.+.+..+.
T Consensus 82 ------~L~vg~~ngtvtefs~sedfn----km~~~r~~~-~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg 150 (404)
T KOG1409|consen 82 ------RLYVGQDNGTVTEFALSEDFN----KMTFLKDYL-AHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLG 150 (404)
T ss_pred ------EEEEEEecceEEEEEhhhhhh----hcchhhhhh-hhhcceeeEEecCCceeEEEeccccceEEEeeccCCccc
Confidence 888888889888777643211 111344443 467788999999888999999999766544444444332
Q ss_pred ecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCC-CCceeEEEEecCCCeEEEEEcCCCceEEEEe
Q 019405 199 TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA-QRRPVMSFDFRETPIKAVAEEPDSFNIYIGN 277 (341)
Q Consensus 199 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~ 277 (341)
..... .+..++.+ +-.+...|...|.|.+-.+.. .-.++..+.+|..++.+++|.|..+.|++|.
T Consensus 151 ~Y~~~----------~~~t~~~~----d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~ 216 (404)
T KOG1409|consen 151 GYNFE----------TPASALQF----DALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGA 216 (404)
T ss_pred ceEee----------ccCCCCce----eeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEecc
Confidence 11110 00111122 111444555566666555443 2345788999999999999999999999999
Q ss_pred CCCCEEEEECCCCe-EEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCc
Q 019405 278 GSGDLASVDIRTGK-LLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ 334 (341)
Q Consensus 278 ~dg~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 334 (341)
.|..+.+||+.-++ ....+.+| .+.|..+..-+--+.+.+++.||.|.+||++...
T Consensus 217 ~d~~vi~wdigg~~g~~~el~gh-~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 217 SDHSVIMWDIGGRKGTAYELQGH-NDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred ccCceEEEeccCCcceeeeeccc-hhhhhhhhhhhhheeeeeccCCCeEEEEecccee
Confidence 99999999997544 34567777 8899999888888899999999999999998543
No 251
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.38 E-value=1.7e-10 Score=99.64 Aligned_cols=283 Identities=13% Similarity=0.118 Sum_probs=191.0
Q ss_pred ceeeeecCCCCeEEEEEecCcc-----Cc-----cceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCC
Q 019405 15 LRALTFDSLGLIKVIEARGEHG-----GV-----PKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN 84 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~~-----g~-----~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~ 84 (341)
.-+.+|+.||.+||..+....+ |. ..+-+++.+|..+|..++|..... .|-+...+|.|.||-+-.
T Consensus 27 gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q----KLTtSDt~GlIiVWmlyk 102 (1189)
T KOG2041|consen 27 GYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ----KLTTSDTSGLIIVWMLYK 102 (1189)
T ss_pred CeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc----cccccCCCceEEEEeeec
Confidence 4467889999999999887521 21 112256788999999999887665 588899999999999988
Q ss_pred CcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecC-C
Q 019405 85 GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCAS-G 163 (341)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~-~ 163 (341)
|....++-.. ....-+.++.|...+. .+....+||.+.+=+++.+ ++|.-.-. .
T Consensus 103 gsW~EEMiNn------RnKSvV~SmsWn~dG~--------kIcIvYeDGavIVGsvdGN-----------RIwgKeLkg~ 157 (1189)
T KOG2041|consen 103 GSWCEEMINN------RNKSVVVSMSWNLDGT--------KICIVYEDGAVIVGSVDGN-----------RIWGKELKGQ 157 (1189)
T ss_pred ccHHHHHhhC------cCccEEEEEEEcCCCc--------EEEEEEccCCEEEEeeccc-----------eecchhcchh
Confidence 8776655442 1123345555554444 8888999999988776522 45553322 2
Q ss_pred ceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCC---CCccCccCCeeeeEEEEEe------cCCCCEEEEEe
Q 019405 164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP---KNSLGIFTPTWFTSAAFLS------IDDHRKFVAGT 234 (341)
Q Consensus 164 ~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~------~~~~~~l~~~~ 234 (341)
....+.|++|.+.++.+-..|.+++||.... ....++... ........+..+..+.|.. .|+...|+++.
T Consensus 158 ~l~hv~ws~D~~~~Lf~~ange~hlydnqgn-F~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy 236 (1189)
T KOG2041|consen 158 LLAHVLWSEDLEQALFKKANGETHLYDNQGN-FERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCY 236 (1189)
T ss_pred eccceeecccHHHHHhhhcCCcEEEeccccc-HHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEE
Confidence 3557889999999888888999999997532 111111000 0000000012244444421 46788999999
Q ss_pred CCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCC---------CCEEEEECCCCeEEeEEeccccCcee
Q 019405 235 NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS---------GDLASVDIRTGKLLGCFIGKCSGSIR 305 (341)
Q Consensus 235 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d---------g~i~iwd~~~~~~~~~~~~~~~~~i~ 305 (341)
.+|.+.|..-.+...|+..-.+ ..+....|+++|..|++++.+ +.|.+|.. -|+.+.+++.+ ...|+
T Consensus 237 ~nGr~QiMR~eND~~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvp-g~~It 312 (1189)
T KOG2041|consen 237 ANGRMQIMRSENDPEPVVVDTG--MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVP-GSCIT 312 (1189)
T ss_pred cCceehhhhhcCCCCCeEEecc--cEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecC-Cceee
Confidence 9999999876665555544333 678899999999999998764 24666654 47788888887 88999
Q ss_pred EEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405 306 SIARHPTLPIIASCGLDSYLRFWDIKT 332 (341)
Q Consensus 306 ~~~~~~~~~~l~s~~~dg~v~iwd~~~ 332 (341)
+++|-..|-.++.+ .|+.|++=+++.
T Consensus 313 ~lsWEg~gLriA~A-vdsfiyfanIRP 338 (1189)
T KOG2041|consen 313 GLSWEGTGLRIAIA-VDSFIYFANIRP 338 (1189)
T ss_pred eeEEcCCceEEEEE-ecceEEEEeecc
Confidence 99998777666655 566666655543
No 252
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.35 E-value=1.4e-10 Score=89.70 Aligned_cols=234 Identities=12% Similarity=0.080 Sum_probs=141.0
Q ss_pred cCCeEEEeeCCCCcchh--eeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccC
Q 019405 73 KNGLTDILNPLNGDLRV--AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESS 150 (341)
Q Consensus 73 ~dg~i~iw~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~ 150 (341)
..|++.+|++.+.+... ++... ....+..+.|-.... .++-.++-+...|.+.++......... .
T Consensus 44 R~Gkl~Lys~~d~~~~~l~~~q~~-------dts~~~dm~w~~~~~----~g~~~l~~a~a~G~i~~~r~~~~~ss~--~ 110 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSPLDTLQCT-------DTSTEFDMLWRIRET----DGDFNLLDAHARGQIQLYRNDEDESSV--H 110 (339)
T ss_pred eccceEEEeecccccCccceeeee-------cccccceeeeeeccC----CccceeeeccccceEEEEeeccceeee--e
Confidence 35788889887765544 22210 011222233322111 011256667778888888765433110 0
Q ss_pred CceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCcee--eecCCCCCCccCccCCeeeeEEEEEecCCCC
Q 019405 151 CSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI--WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR 228 (341)
Q Consensus 151 ~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 228 (341)
-..+..-... .....++.|++.+..++++-.+|.+.+-+....... +..+.|. -.+.-..|. ..+.+
T Consensus 111 L~~ls~~ki~-~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He---------~E~Wta~f~-~~~pn 179 (339)
T KOG0280|consen 111 LRGLSSKKIS-VVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHE---------FEAWTAKFS-DKEPN 179 (339)
T ss_pred ecccchhhhh-heeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccc---------eeeeeeecc-cCCCc
Confidence 0000000000 013457888999999999999999886555433222 2344433 335556663 34568
Q ss_pred EEEEEeCCCeEEEEEcCCCCcee-EEEEecCCCeEEEEEcC-CCceEEEEeCCCCEEEEECC-CCeEEeEEeccccCcee
Q 019405 229 KFVAGTNDHQVRLYDTSAQRRPV-MSFDFRETPIKAVAEEP-DSFNIYIGNGSGDLASVDIR-TGKLLGCFIGKCSGSIR 305 (341)
Q Consensus 229 ~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~-~~~~~~~~~~~~~~~i~ 305 (341)
++.+|+.|+.+..||++..+.-+ +..+-|...|.++.-+| .+.+|++|++|..|++||.+ -++++..-.. .+.|+
T Consensus 180 lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v--~GGVW 257 (339)
T KOG0280|consen 180 LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKV--GGGVW 257 (339)
T ss_pred eEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCcc--ccceE
Confidence 99999999999999999433222 22456888999998876 57899999999999999999 4667654433 58899
Q ss_pred EEEecCCCC-EEEEEeCCCcEEEEEcCC
Q 019405 306 SIARHPTLP-IIASCGLDSYLRFWDIKT 332 (341)
Q Consensus 306 ~~~~~~~~~-~l~s~~~dg~v~iwd~~~ 332 (341)
.+.++|.-. .|+.++.-+-.+|-+++.
T Consensus 258 Ri~~~p~~~~~lL~~CMh~G~ki~~~~~ 285 (339)
T KOG0280|consen 258 RIKHHPEIFHRLLAACMHNGAKILDSSD 285 (339)
T ss_pred EEEecchhhhHHHHHHHhcCceEEEecc
Confidence 999999543 233333333355555544
No 253
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.35 E-value=2.9e-09 Score=92.94 Aligned_cols=219 Identities=13% Similarity=0.080 Sum_probs=131.3
Q ss_pred CeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEccc---ceeEEEEeeecccccccCC
Q 019405 75 GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK---GKASMRSIEVTKVSAESSC 151 (341)
Q Consensus 75 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~~i~~~~~~~~~~~~~~ 151 (341)
..|.++|.... ....+..+ ...+....|.+... .++..... ..+.+|++....
T Consensus 170 ~~l~~~d~~g~-~~~~l~~~--------~~~~~~p~~Spdg~--------~la~~~~~~~~~~i~v~d~~~g~------- 225 (417)
T TIGR02800 170 YELQVADYDGA-NPQTITRS--------REPILSPAWSPDGQ--------KLAYVSFESGKPEIYVQDLATGQ------- 225 (417)
T ss_pred ceEEEEcCCCC-CCEEeecC--------CCceecccCCCCCC--------EEEEEEcCCCCcEEEEEECCCCC-------
Confidence 35888887533 33333321 12344444444333 45444332 467788775332
Q ss_pred ceEEEEEeecCCceEEEEecCCCCEEEE-eeCCC--eEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCC
Q 019405 152 STVKSWNVCASGTIAFSKVDISEKFSLF-GGKGV--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR 228 (341)
Q Consensus 152 ~~v~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 228 (341)
..... ...+.+....|+|+++.|+. .+.++ .|++||+.+++... +..+. .......| +|+++
T Consensus 226 --~~~~~-~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~---------~~~~~~~~--s~dg~ 290 (417)
T TIGR02800 226 --REKVA-SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR-LTNGP---------GIDTEPSW--SPDGK 290 (417)
T ss_pred --EEEee-cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEE-CCCCC---------CCCCCEEE--CCCCC
Confidence 12211 12345667899999987764 34443 58899998765433 22221 11334578 88999
Q ss_pred EEEEEeCC-C--eEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCC---CEEEEECCCCeEEeEEeccccC
Q 019405 229 KFVAGTND-H--QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG---DLASVDIRTGKLLGCFIGKCSG 302 (341)
Q Consensus 229 ~l~~~~~d-~--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg---~i~iwd~~~~~~~~~~~~~~~~ 302 (341)
.|+..+.. + .|+++|+.+++ ...+..+........|+|+|++|+.++.++ .|.+||+.++... .+... .
T Consensus 291 ~l~~~s~~~g~~~iy~~d~~~~~--~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~--~ 365 (417)
T TIGR02800 291 SIAFTSDRGGSPQIYMMDADGGE--VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT--G 365 (417)
T ss_pred EEEEEECCCCCceEEEEECCCCC--EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC--C
Confidence 88766543 3 57888877654 444554556677889999999999888775 7899999876543 23222 2
Q ss_pred ceeEEEecCCCCEEEEEeCCC---cEEEEEcCCCceeee
Q 019405 303 SIRSIARHPTLPIIASCGLDS---YLRFWDIKTRQLLSA 338 (341)
Q Consensus 303 ~i~~~~~~~~~~~l~s~~~dg---~v~iwd~~~~~~~~~ 338 (341)
......|+|+++.|+..+.++ .+++.+.. |+....
T Consensus 366 ~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~ 403 (417)
T TIGR02800 366 LDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRAR 403 (417)
T ss_pred CCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeE
Confidence 345678999999888777654 45565644 444433
No 254
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.34 E-value=2e-09 Score=92.47 Aligned_cols=259 Identities=14% Similarity=0.093 Sum_probs=152.6
Q ss_pred CceeeeecCCCCeEEEEEecCccCccceeeeccCCC-CCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheee
Q 019405 14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPH-SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS 92 (341)
Q Consensus 14 ~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 92 (341)
.-+++.++.+|.+..++..+. ++ .|.... ..+. .++.. .+..++.+..+|.|..||.++|+.+.++.
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG-----~~--~W~~~~~~~~~---~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 172 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDG-----KE--LWRAKLSSEVL---SPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYS 172 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCC-----cE--eeeeccCceee---cCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEc
Confidence 456777888888888877654 33 232111 1111 11110 12357778889999999999998877765
Q ss_pred ccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCc--------
Q 019405 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGT-------- 164 (341)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~-------- 164 (341)
...+.... ......... ++ .++.+..+|.+..++++.+. .+|......+
T Consensus 173 ~~~~~~~~---~~~~sp~~~--~~--------~v~~~~~~g~v~ald~~tG~----------~~W~~~~~~~~g~~~~~~ 229 (377)
T TIGR03300 173 RVTPALTL---RGSASPVIA--DG--------GVLVGFAGGKLVALDLQTGQ----------PLWEQRVALPKGRTELER 229 (377)
T ss_pred cCCCceee---cCCCCCEEE--CC--------EEEEECCCCEEEEEEccCCC----------EeeeeccccCCCCCchhh
Confidence 42111000 000001111 12 56777777887777764432 2333211000
Q ss_pred eEEEEecC--CCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEE
Q 019405 165 IAFSKVDI--SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY 242 (341)
Q Consensus 165 i~~~~~~~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iw 242 (341)
...+.-+| .+..++.++.+|.+..||.++++.++...... ...... .+..++.++.+|.+..+
T Consensus 230 ~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~-----------~~~p~~----~~~~vyv~~~~G~l~~~ 294 (377)
T TIGR03300 230 LVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS-----------YQGPAV----DDNRLYVTDADGVVVAL 294 (377)
T ss_pred hhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC-----------ccCceE----eCCEEEEECCCCeEEEE
Confidence 00000011 35677888889999999999999888765321 111222 45678888899999999
Q ss_pred EcCCCCceeEEEEe-cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCcee-EEEecCCCCEEEEEe
Q 019405 243 DTSAQRRPVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIR-SIARHPTLPIIASCG 320 (341)
Q Consensus 243 d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~s~~ 320 (341)
|..+++. +..... ......+... .+..|++++.+|.|+++|..+++.+.+++.+ ...+. +.++. + ..|+.++
T Consensus 295 d~~tG~~-~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~-~~~~~~sp~~~-~-~~l~v~~ 368 (377)
T TIGR03300 295 DRRSGSE-LWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTD-GSGIASPPVVV-G-DGLLVQT 368 (377)
T ss_pred ECCCCcE-EEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcC-CCccccCCEEE-C-CEEEEEe
Confidence 9988764 333311 1111222222 3568889999999999999999999988865 43332 22332 3 3577888
Q ss_pred CCCcEEEE
Q 019405 321 LDSYLRFW 328 (341)
Q Consensus 321 ~dg~v~iw 328 (341)
.||.|+.|
T Consensus 369 ~dG~l~~~ 376 (377)
T TIGR03300 369 RDGDLYAF 376 (377)
T ss_pred CCceEEEe
Confidence 99998765
No 255
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.32 E-value=1.2e-09 Score=95.45 Aligned_cols=157 Identities=16% Similarity=0.116 Sum_probs=110.4
Q ss_pred CCceEEEEecCCCCEEEEeeCC---CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEE-EeCCC
Q 019405 162 SGTIAFSKVDISEKFSLFGGKG---VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA-GTNDH 237 (341)
Q Consensus 162 ~~~i~~~~~~~~~~~l~~~~~d---~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-~~~d~ 237 (341)
...+...+|+|++++|+....+ ..|++||+.+++...... .. ..+.+++| +|+++.|+. .+.++
T Consensus 189 ~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~-~~---------~~~~~~~~--spDg~~l~~~~~~~~ 256 (417)
T TIGR02800 189 REPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS-FP---------GMNGAPAF--SPDGSKLAVSLSKDG 256 (417)
T ss_pred CCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec-CC---------CCccceEE--CCCCCEEEEEECCCC
Confidence 4467888999999999877654 479999998875543222 11 22456788 889987764 44444
Q ss_pred --eEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeC-CC--CEEEEECCCCeEEeEEeccccCceeEEEecCC
Q 019405 238 --QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SG--DLASVDIRTGKLLGCFIGKCSGSIRSIARHPT 312 (341)
Q Consensus 238 --~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-dg--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~ 312 (341)
.|++||+.++. ...+..+........|+|+|+.|+..+. ++ .|+++|+.+++.. .+..+ ...+..+.|+|+
T Consensus 257 ~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~-~~~~~~~~~spd 332 (417)
T TIGR02800 257 NPDIYVMDLDGKQ--LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFR-GGYNASPSWSPD 332 (417)
T ss_pred CccEEEEECCCCC--EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecC-CCCccCeEECCC
Confidence 58888988754 3444445444557789999988876554 33 5888898876643 33333 456778899999
Q ss_pred CCEEEEEeCCC---cEEEEEcCCCc
Q 019405 313 LPIIASCGLDS---YLRFWDIKTRQ 334 (341)
Q Consensus 313 ~~~l~s~~~dg---~v~iwd~~~~~ 334 (341)
+++|+.++.++ .|.+||+.++.
T Consensus 333 g~~i~~~~~~~~~~~i~~~d~~~~~ 357 (417)
T TIGR02800 333 GDLIAFVHREGGGFNIAVMDLDGGG 357 (417)
T ss_pred CCEEEEEEccCCceEEEEEeCCCCC
Confidence 99998888776 78999988754
No 256
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.30 E-value=1.7e-09 Score=82.83 Aligned_cols=196 Identities=9% Similarity=-0.049 Sum_probs=132.1
Q ss_pred eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecC-CCCEEEEeeCCCeEEEEECCCCceeeecCCC
Q 019405 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP 203 (341)
Q Consensus 125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~ 203 (341)
.|+.++..|...+|..... ++..++.+.... .|.-+.=.. ..-.+..++.|.++++.+++-+.....+..+
T Consensus 86 ~la~gG~~g~fd~~~~~tn-------~~h~~~cd~snn-~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~ 157 (344)
T KOG4532|consen 86 TLADGGASGQFDLFACNTN-------DGHLYQCDVSNN-DVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQ 157 (344)
T ss_pred EEEeccccceeeeecccCc-------ccceeeeccccc-chhhhhhhcccccceeeccCCcceeEEEEecCcccceeecc
Confidence 7888889999999987542 233444443221 111111001 1223556788888888887654333333222
Q ss_pred CCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEE--EEecCCCeEEEEEcCCCceEEEEeCCCC
Q 019405 204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS--FDFRETPIKAVAEEPDSFNIYIGNGSGD 281 (341)
Q Consensus 204 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~g~~dg~ 281 (341)
. -.+.++++ +++++++++.+....|-.|.+......+.. ....++.-.+..|+.....+|++..||+
T Consensus 158 ~---------~~~ns~~~--snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~ 226 (344)
T KOG4532|consen 158 N---------LTQNSLHY--SNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGT 226 (344)
T ss_pred c---------cceeeeEE--cCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCc
Confidence 1 11667788 899999999999999999998764332222 2223445567889999999999999999
Q ss_pred EEEEECCCCeEE----eEEeccccCceeEEEecCCCC--EEEEEeCCCcEEEEEcCCCceeeee
Q 019405 282 LASVDIRTGKLL----GCFIGKCSGSIRSIARHPTLP--IIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 282 i~iwd~~~~~~~----~~~~~~~~~~i~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
+.|||++..... ..-+.||.+.+..+.|++.|. +|+..-.-+.+.+-|+++++-.+.+
T Consensus 227 ~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I 290 (344)
T KOG4532|consen 227 CAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVI 290 (344)
T ss_pred EEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEE
Confidence 999999875432 233455699999999999776 5666656778999999998766554
No 257
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.30 E-value=1.3e-07 Score=80.06 Aligned_cols=265 Identities=18% Similarity=0.148 Sum_probs=150.1
Q ss_pred CCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEc-cCCeEEEeeCCC-Ccchheee-----ccC
Q 019405 23 LGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR-KNGLTDILNPLN-GDLRVAIS-----NAG 95 (341)
Q Consensus 23 ~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~-~dg~i~iw~~~~-~~~~~~~~-----~~~ 95 (341)
.|.|..+.+... +|..+.+.+..........+++++++. +|+++. .+|.|.++++.. +....... ...
T Consensus 61 ~g~v~~~~i~~~-~g~L~~~~~~~~~g~~p~~i~~~~~g~----~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g 135 (345)
T PF10282_consen 61 SGGVSSYRIDPD-TGTLTLLNSVPSGGSSPCHIAVDPDGR----FLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSG 135 (345)
T ss_dssp TTEEEEEEEETT-TTEEEEEEEEEESSSCEEEEEECTTSS----EEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEE
T ss_pred CCCEEEEEECCC-cceeEEeeeeccCCCCcEEEEEecCCC----EEEEEEccCCeEEEEEccCCcccceeeeecccCCCC
Confidence 567778887765 244444444432334445677766665 777775 589999999986 43332211 111
Q ss_pred CCCCCCCCCceeeEeeeeccccccccccceeEE-EcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC
Q 019405 96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLT-CTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (341)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~ 174 (341)
+...........++.+.+..+ .+++ ......+.+++++..... -..........+..-..+.|+|++
T Consensus 136 ~~~~rq~~~h~H~v~~~pdg~--------~v~v~dlG~D~v~~~~~~~~~~~----l~~~~~~~~~~G~GPRh~~f~pdg 203 (345)
T PF10282_consen 136 PNPDRQEGPHPHQVVFSPDGR--------FVYVPDLGADRVYVYDIDDDTGK----LTPVDSIKVPPGSGPRHLAFSPDG 203 (345)
T ss_dssp SSTTTTSSTCEEEEEE-TTSS--------EEEEEETTTTEEEEEEE-TTS-T----EEEEEEEECSTTSSEEEEEE-TTS
T ss_pred CcccccccccceeEEECCCCC--------EEEEEecCCCEEEEEEEeCCCce----EEEeeccccccCCCCcEEEEcCCc
Confidence 111111223344444444333 4444 334456777777543210 001233345556678899999999
Q ss_pred CEEEEe-eCCCeEEEEECC--CCce--eeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEe-CCCeEEEEEcCC--
Q 019405 175 KFSLFG-GKGVEVNVWDLD--KCEK--IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-NDHQVRLYDTSA-- 246 (341)
Q Consensus 175 ~~l~~~-~~d~~v~i~d~~--~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~-- 246 (341)
+++++. -.++.|.++++. ++.. +..+...... .........+++ +|++++|+++. ..+.|.+|++..
T Consensus 204 ~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~i~i--spdg~~lyvsnr~~~sI~vf~~d~~~ 278 (345)
T PF10282_consen 204 KYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG---FTGENAPAEIAI--SPDGRFLYVSNRGSNSISVFDLDPAT 278 (345)
T ss_dssp SEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT---SCSSSSEEEEEE---TTSSEEEEEECTTTEEEEEEECTTT
T ss_pred CEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc---ccccCCceeEEE--ecCCCEEEEEeccCCEEEEEEEecCC
Confidence 988665 457889999987 3322 2222221110 111124677888 89999888765 467899999943
Q ss_pred CC-ceeEEEEecCCCeEEEEEcCCCceEEEEeC-CCCEEEEEC--CCCeEEeEEeccccCceeEEEe
Q 019405 247 QR-RPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SGDLASVDI--RTGKLLGCFIGKCSGSIRSIAR 309 (341)
Q Consensus 247 ~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-dg~i~iwd~--~~~~~~~~~~~~~~~~i~~~~~ 309 (341)
++ ..+..+......-+.++++|+|++|+++.. ++.|.+|++ ++|++...-....-....|+.|
T Consensus 279 g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 279 GTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp TTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred CceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 22 123334434445789999999999998874 578998865 5777654432211344556655
No 258
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.29 E-value=1.2e-10 Score=90.78 Aligned_cols=264 Identities=12% Similarity=0.103 Sum_probs=165.2
Q ss_pred CceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCc-----chheeeccCCCC----CCCCCCceeeEeeeecccccccc
Q 019405 51 SNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD-----LRVAISNAGDSG----AQPEDDGIVGLHLFKRQREESSS 121 (341)
Q Consensus 51 ~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 121 (341)
.++++-|... |.||++|...|+|.++.-+... ...+++.|...- ...-+..+..+.|+.+.+.
T Consensus 28 ~ItaVefd~t----g~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r---- 99 (460)
T COG5170 28 KITAVEFDET----GLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGR---- 99 (460)
T ss_pred eeeEEEeccc----cceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCc----
Confidence 3444444433 4599999999999999876432 223344432210 0112356677888887653
Q ss_pred ccceeEEEcccceeEEEEeeecccc----------------------------ccc-CC-----ceEEEEEeecCCceEE
Q 019405 122 RSRTLLTCTTKGKASMRSIEVTKVS----------------------------AES-SC-----STVKSWNVCASGTIAF 167 (341)
Q Consensus 122 ~~~~l~~~~~~g~~~i~~~~~~~~~----------------------------~~~-~~-----~~v~~~~~~~~~~i~~ 167 (341)
+.++..+.|.++++|.+...... ..+ .+ .+.+++...|.-.|.+
T Consensus 100 --~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNS 177 (460)
T COG5170 100 --NHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINS 177 (460)
T ss_pred --ceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeee
Confidence 27888889999999998654210 000 11 1123343345556889
Q ss_pred EEecCCCCEEEEeeCCCeEEEEECCCCceeee---cCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEc
Q 019405 168 SKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT---AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDT 244 (341)
Q Consensus 168 ~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~ 244 (341)
+.++.|.+.++++ .|-.|.+|+++....... ++.+....+ ..-|++..|+| ...+.+.-.+..|.|++-|+
T Consensus 178 iS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeL----teVItSaeFhp-~~cn~fmYSsSkG~Ikl~Dl 251 (460)
T COG5170 178 ISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEEL----TEVITSAEFHP-EMCNVFMYSSSKGEIKLNDL 251 (460)
T ss_pred eeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHH----HHHHhhcccCH-hHcceEEEecCCCcEEehhh
Confidence 9999888888764 566899999875443333 222222111 12377788852 23456666778999999999
Q ss_pred CCCCc-----eeEEE----------EecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCC-eEEeEEecc---------
Q 019405 245 SAQRR-----PVMSF----------DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG-KLLGCFIGK--------- 299 (341)
Q Consensus 245 ~~~~~-----~~~~~----------~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~~--------- 299 (341)
+.... .+... .+-...|..+.|+++|+++++-+. -+|+|||.+.. .++.++..|
T Consensus 252 Rq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d 330 (460)
T COG5170 252 RQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELND 330 (460)
T ss_pred hhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHh
Confidence 85321 11111 112346888999999999987654 58999999854 466666544
Q ss_pred --ccCce---eEEEecCCCCEEEEEeCCCcEEEEEcC
Q 019405 300 --CSGSI---RSIARHPTLPIIASCGLDSYLRFWDIK 331 (341)
Q Consensus 300 --~~~~i---~~~~~~~~~~~l~s~~~dg~v~iwd~~ 331 (341)
....| ..+.|+.+...+++|+.....-++-+.
T Consensus 331 ~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 331 VYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred hhhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence 12233 347888888999999988877777643
No 259
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.28 E-value=2.3e-08 Score=95.50 Aligned_cols=167 Identities=10% Similarity=-0.004 Sum_probs=111.1
Q ss_pred EEEEecC-CCCEEEEeeCCCeEEEEECCCCceeeecCCCC------CCccCccCCeeeeEEEEEecCCCC-EEEEEeCCC
Q 019405 166 AFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP------KNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDH 237 (341)
Q Consensus 166 ~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~ 237 (341)
..++++| ++.++++.+.++.|++||..++.... +.... ........-.....+++ +|+++ ++++-+.++
T Consensus 686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~~~~~g~~~~~~~~~~P~GIav--spdG~~LYVADs~n~ 762 (1057)
T PLN02919 686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYERNLNGSSGTSTSFAQPSGISL--SPDLKELYIADSESS 762 (1057)
T ss_pred eEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCccccCCCCccccccccCccEEEE--eCCCCEEEEEECCCC
Confidence 5789999 55666777778899999998765421 11110 00000001123567888 78887 555666779
Q ss_pred eEEEEEcCCCCceeEE------------EEec--------CCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEe
Q 019405 238 QVRLYDTSAQRRPVMS------------FDFR--------ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI 297 (341)
Q Consensus 238 ~i~iwd~~~~~~~~~~------------~~~~--------~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~ 297 (341)
.|++||+.++...+.. +..+ -..-..++++++|.++++-..++.|++||..++.......
T Consensus 763 ~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG 842 (1057)
T PLN02919 763 SIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAG 842 (1057)
T ss_pred eEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEec
Confidence 9999999875421110 0000 0123578999999988888889999999998876553221
Q ss_pred cc------------ccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCce
Q 019405 298 GK------------CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL 335 (341)
Q Consensus 298 ~~------------~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 335 (341)
.. .-.....++++++|+++++-+.++.|++||+++++.
T Consensus 843 ~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 843 TGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred cCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 00 012567899999999999989999999999998765
No 260
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=9.2e-09 Score=89.21 Aligned_cols=160 Identities=13% Similarity=0.086 Sum_probs=100.5
Q ss_pred CceEEEEecCCCCEEEEeeC-----CCeEEEEECCCC---ceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEe
Q 019405 163 GTIAFSKVDISEKFSLFGGK-----GVEVNVWDLDKC---EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT 234 (341)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~~-----d~~v~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 234 (341)
+.....+|+|||+.|+..+. +..+..|++..+ +......... ......+| +|+|+.|+..+
T Consensus 231 g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~---------~~~~~p~w--SPDG~~Laf~s 299 (428)
T PRK01029 231 GNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAF---------GTQGNPSF--SPDGTRLVFVS 299 (428)
T ss_pred CCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCC---------CCcCCeEE--CCCCCEEEEEE
Confidence 34456799999998886543 223444676643 2221111110 12345688 89999887665
Q ss_pred -CCCeEEEE--EcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCC---CCEEEEECCCCeEEeEEeccccCceeEEE
Q 019405 235 -NDHQVRLY--DTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS---GDLASVDIRTGKLLGCFIGKCSGSIRSIA 308 (341)
Q Consensus 235 -~d~~i~iw--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d---g~i~iwd~~~~~~~~~~~~~~~~~i~~~~ 308 (341)
.++...+| ++.........+..+...+....|+|+|+.|+....+ ..|++||+.+++...... . ...+....
T Consensus 300 ~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~-~~~~~~p~ 377 (428)
T PRK01029 300 NKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-S-PENKESPS 377 (428)
T ss_pred CCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-C-CCCccceE
Confidence 45655555 4432111244455455567789999999988866543 369999999887643332 2 34567899
Q ss_pred ecCCCCEEEEEeC---CCcEEEEEcCCCce
Q 019405 309 RHPTLPIIASCGL---DSYLRFWDIKTRQL 335 (341)
Q Consensus 309 ~~~~~~~l~s~~~---dg~v~iwd~~~~~~ 335 (341)
|+|||+.|+.... ...|+++|+.+++.
T Consensus 378 wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 378 WAIDSLHLVYSAGNSNESELYLISLITKKT 407 (428)
T ss_pred ECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 9999997765433 35788999987654
No 261
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.27 E-value=4e-11 Score=94.62 Aligned_cols=148 Identities=13% Similarity=0.189 Sum_probs=111.4
Q ss_pred EEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCC----ceeEE
Q 019405 178 LFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR----RPVMS 253 (341)
Q Consensus 178 ~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~----~~~~~ 253 (341)
++.+.+..|-+-|++++.... |.. .+-|.++.| ...++++..|+.+|.|..+|++... .+.+.
T Consensus 228 fs~G~sqqv~L~nvetg~~qs-f~s----------ksDVfAlQf--~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r 294 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQS-FQS----------KSDVFALQF--AGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR 294 (425)
T ss_pred ecccccceeEEEEeecccccc-ccc----------chhHHHHHh--cccCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence 445566678888888764432 221 133777788 5678899999999999999999752 23444
Q ss_pred EEecCCCeEEEEEcC-CCceEEEEeCCCCEEEEECCCCeE---EeEEeccccCceeE--EEecCCCCEEEEEeCCCcEEE
Q 019405 254 FDFRETPIKAVAEEP-DSFNIYIGNGSGDLASVDIRTGKL---LGCFIGKCSGSIRS--IARHPTLPIIASCGLDSYLRF 327 (341)
Q Consensus 254 ~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~~~~~---~~~~~~~~~~~i~~--~~~~~~~~~l~s~~~dg~v~i 327 (341)
+ .|.+.|+++..-. ++++|++.+.+|+|++||++--++ +..+.+| -+.-.- +-.++....+++++.|...||
T Consensus 295 l-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGH-vN~~a~l~~~v~~eeg~I~s~GdDcytRi 372 (425)
T KOG2695|consen 295 L-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGH-VNLSAYLPAHVKEEEGSIFSVGDDCYTRI 372 (425)
T ss_pred E-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecc-cccccccccccccccceEEEccCeeEEEE
Confidence 4 3888999987766 778999999999999999987666 8888888 332222 233456678899999999999
Q ss_pred EEcCCCceeeeec
Q 019405 328 WDIKTRQLLSAVC 340 (341)
Q Consensus 328 wd~~~~~~~~~~~ 340 (341)
|.+++|+++.++.
T Consensus 373 Wsl~~ghLl~tip 385 (425)
T KOG2695|consen 373 WSLDSGHLLCTIP 385 (425)
T ss_pred EecccCceeeccC
Confidence 9999999998864
No 262
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.27 E-value=3.3e-07 Score=73.59 Aligned_cols=276 Identities=12% Similarity=0.080 Sum_probs=166.1
Q ss_pred CCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEcc---CCeEEEeeCCC--CcchheeeccCCC
Q 019405 23 LGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARK---NGLTDILNPLN--GDLRVAISNAGDS 97 (341)
Q Consensus 23 ~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~---dg~i~iw~~~~--~~~~~~~~~~~~~ 97 (341)
..-|.+|++... +|.....+ .-......+.++++++.. +|.++-. +|.|.-|.++. |+....-+.. .
T Consensus 15 s~gI~v~~ld~~-~g~l~~~~-~v~~~~nptyl~~~~~~~----~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~--~ 86 (346)
T COG2706 15 SQGIYVFNLDTK-TGELSLLQ-LVAELGNPTYLAVNPDQR----HLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQT--L 86 (346)
T ss_pred CCceEEEEEeCc-ccccchhh-hccccCCCceEEECCCCC----EEEEEEecCCcCcEEEEEEcCCCCeEEEeeccc--c
Confidence 467899999966 34333332 335667788889888776 6777544 57788887764 4432221111 0
Q ss_pred CCCCCCCceeeEeeeeccccccccccceeE-EEcccceeEEEEeeecccccccCCceEEEEEee--------cCCceEEE
Q 019405 98 GAQPEDDGIVGLHLFKRQREESSSRSRTLL-TCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC--------ASGTIAFS 168 (341)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~--------~~~~i~~~ 168 (341)
...+.+.+.. +.++. .++ +-...|.+.++.+...... ...+.+.... ....+...
T Consensus 87 ----~g~~p~yvsv-d~~g~-------~vf~AnY~~g~v~v~p~~~dG~l----~~~v~~~~h~g~~p~~rQ~~~h~H~a 150 (346)
T COG2706 87 ----PGSPPCYVSV-DEDGR-------FVFVANYHSGSVSVYPLQADGSL----QPVVQVVKHTGSGPHERQESPHVHSA 150 (346)
T ss_pred ----CCCCCeEEEE-CCCCC-------EEEEEEccCceEEEEEcccCCcc----ccceeeeecCCCCCCccccCCcccee
Confidence 1122233333 33331 444 4455688888887543211 0011111110 01227788
Q ss_pred EecCCCCEEEEeeCC-CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEe-CCCeEEEEEcCC
Q 019405 169 KVDISEKFSLFGGKG-VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-NDHQVRLYDTSA 246 (341)
Q Consensus 169 ~~~~~~~~l~~~~~d-~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~ 246 (341)
.+.|+++++++.... ..|.+|++..+.....-...- ......+.+.| +|++++....+ -+++|-+|....
T Consensus 151 ~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v------~~G~GPRHi~F--Hpn~k~aY~v~EL~stV~v~~y~~ 222 (346)
T COG2706 151 NFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV------KPGAGPRHIVF--HPNGKYAYLVNELNSTVDVLEYNP 222 (346)
T ss_pred eeCCCCCEEEEeecCCceEEEEEcccCcccccccccc------CCCCCcceEEE--cCCCcEEEEEeccCCEEEEEEEcC
Confidence 999999999987542 379999998765433221111 11134678899 78998877654 589999999887
Q ss_pred CCceeEEEEe---------cCCCeEEEEEcCCCceEEEEeC-CCCEEEEECC--CCeEE--eEEeccccCceeEEEecCC
Q 019405 247 QRRPVMSFDF---------RETPIKAVAEEPDSFNIYIGNG-SGDLASVDIR--TGKLL--GCFIGKCSGSIRSIARHPT 312 (341)
Q Consensus 247 ~~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~g~~-dg~i~iwd~~--~~~~~--~~~~~~~~~~i~~~~~~~~ 312 (341)
....+..++. .......+..+|+|++|+++.. ...|.+|.+. ++++. .....+ ...-+...|++.
T Consensus 223 ~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~te-g~~PR~F~i~~~ 301 (346)
T COG2706 223 AVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTE-GQFPRDFNINPS 301 (346)
T ss_pred CCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccC-CcCCccceeCCC
Confidence 4222333332 2345677899999999998874 3578888765 34332 222222 334678899999
Q ss_pred CCEEEEEeCCC-cEEEEEcC
Q 019405 313 LPIIASCGLDS-YLRFWDIK 331 (341)
Q Consensus 313 ~~~l~s~~~dg-~v~iwd~~ 331 (341)
+++|+.+..++ .|.+|.+.
T Consensus 302 g~~Liaa~q~sd~i~vf~~d 321 (346)
T COG2706 302 GRFLIAANQKSDNITVFERD 321 (346)
T ss_pred CCEEEEEccCCCcEEEEEEc
Confidence 99999988664 68888654
No 263
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.26 E-value=4.7e-09 Score=91.82 Aligned_cols=159 Identities=10% Similarity=0.024 Sum_probs=107.6
Q ss_pred cCCceEEEEecCCCCEEEEeeCC---CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEE-EeCC
Q 019405 161 ASGTIAFSKVDISEKFSLFGGKG---VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA-GTND 236 (341)
Q Consensus 161 ~~~~i~~~~~~~~~~~l~~~~~d---~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-~~~d 236 (341)
+...+....|+|||+.|+..+.+ ..|.+||+.+++....... . .......| +|+++.|+. ...+
T Consensus 197 ~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~-~---------g~~~~~~~--SpDG~~la~~~~~~ 264 (430)
T PRK00178 197 SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNF-E---------GLNGAPAW--SPDGSKLAFVLSKD 264 (430)
T ss_pred CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCC-C---------CCcCCeEE--CCCCCEEEEEEccC
Confidence 34578889999999998876543 3699999988765432211 1 12345788 899988874 4444
Q ss_pred C--eEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeC-CC--CEEEEECCCCeEEeEEeccccCceeEEEecC
Q 019405 237 H--QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SG--DLASVDIRTGKLLGCFIGKCSGSIRSIARHP 311 (341)
Q Consensus 237 ~--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-dg--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~ 311 (341)
+ .|++||+.+++ ...+..+........|+|+|+.|+..+. ++ .|+++|+.+++..... .. ........|+|
T Consensus 265 g~~~Iy~~d~~~~~--~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-~~-~~~~~~~~~Sp 340 (430)
T PRK00178 265 GNPEIYVMDLASRQ--LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT-FV-GNYNARPRLSA 340 (430)
T ss_pred CCceEEEEECCCCC--eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cC-CCCccceEECC
Confidence 4 68888988754 4445555555667899999988776553 33 5888888877643322 11 22334578999
Q ss_pred CCCEEEEEeCC-C--cEEEEEcCCCce
Q 019405 312 TLPIIASCGLD-S--YLRFWDIKTRQL 335 (341)
Q Consensus 312 ~~~~l~s~~~d-g--~v~iwd~~~~~~ 335 (341)
+|+.|+..+.+ + .|.++|+.+++.
T Consensus 341 dg~~i~~~~~~~~~~~l~~~dl~tg~~ 367 (430)
T PRK00178 341 DGKTLVMVHRQDGNFHVAAQDLQRGSV 367 (430)
T ss_pred CCCEEEEEEccCCceEEEEEECCCCCE
Confidence 99988777643 3 588899988754
No 264
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.26 E-value=6e-10 Score=93.99 Aligned_cols=164 Identities=14% Similarity=0.157 Sum_probs=125.3
Q ss_pred CCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEe------------cCCCCEEEEEeCCCeE
Q 019405 172 ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS------------IDDHRKFVAGTNDHQV 239 (341)
Q Consensus 172 ~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------------~~~~~~l~~~~~d~~i 239 (341)
|...++|....||.+++||..+++....+.....-.-......|...+...| +.+-..++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4567889999999999999998887776654321110000012222222211 1233567888999999
Q ss_pred EEEEcCCCCceeEEEE--ecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEE
Q 019405 240 RLYDTSAQRRPVMSFD--FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIA 317 (341)
Q Consensus 240 ~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 317 (341)
.+|+...++. ...+. .|.+.|.++.++.+-..|.+++.|+.+..|+...++.++.++.. ...+.+++.+||+..|+
T Consensus 83 ~~ys~~~g~i-t~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~-~~~~~sl~is~D~~~l~ 160 (541)
T KOG4547|consen 83 LLYSVAGGEI-TAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQ-KPLVSSLCISPDGKILL 160 (541)
T ss_pred EEEEecCCeE-EEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccC-CCccceEEEcCCCCEEE
Confidence 9999998764 33443 48889999999999899999999999999999999999999987 78899999999999999
Q ss_pred EEeCCCcEEEEEcCCCceeeee
Q 019405 318 SCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 318 s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
+++ +.|++||+++++.+.++
T Consensus 161 ~as--~~ik~~~~~~kevv~~f 180 (541)
T KOG4547|consen 161 TAS--RQIKVLDIETKEVVITF 180 (541)
T ss_pred ecc--ceEEEEEccCceEEEEe
Confidence 886 56999999999988775
No 265
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=8.6e-09 Score=86.72 Aligned_cols=136 Identities=13% Similarity=0.116 Sum_probs=101.4
Q ss_pred EEEeecCCceEEEEecCCCCEEEE--eeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEE
Q 019405 156 SWNVCASGTIAFSKVDISEKFSLF--GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG 233 (341)
Q Consensus 156 ~~~~~~~~~i~~~~~~~~~~~l~~--~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 233 (341)
...+...++|.++.|++++..+++ |.+-..+.|||++ +..+..+... +-+++-| +|.|++++.+
T Consensus 264 ~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~eg-----------pRN~~~f--np~g~ii~lA 329 (566)
T KOG2315|consen 264 SVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPEG-----------PRNTAFF--NPHGNIILLA 329 (566)
T ss_pred EEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCCCC-----------CccceEE--CCCCCEEEEe
Confidence 344455789999999999977664 5677889999985 6677776653 2456778 8999999987
Q ss_pred eCC---CeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeC------CCCEEEEECCCCeEEeEEeccccCce
Q 019405 234 TND---HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG------SGDLASVDIRTGKLLGCFIGKCSGSI 304 (341)
Q Consensus 234 ~~d---~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~------dg~i~iwd~~~~~~~~~~~~~~~~~i 304 (341)
+.+ |.+-+||+.+.+. +..+... ..+-+.|+|||++++++.. |+.++||+. +|.+++...-. ...
T Consensus 330 GFGNL~G~mEvwDv~n~K~-i~~~~a~--~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~~~~f~--sEL 403 (566)
T KOG2315|consen 330 GFGNLPGDMEVWDVPNRKL-IAKFKAA--NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLLHEKMFK--SEL 403 (566)
T ss_pred ecCCCCCceEEEeccchhh-ccccccC--CceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCceeehhhhh--HhH
Confidence 764 7899999998554 6666543 3456899999999998875 678999997 47766544332 257
Q ss_pred eEEEecC
Q 019405 305 RSIARHP 311 (341)
Q Consensus 305 ~~~~~~~ 311 (341)
+.+.|-|
T Consensus 404 ~qv~W~P 410 (566)
T KOG2315|consen 404 LQVEWRP 410 (566)
T ss_pred hheeeee
Confidence 7778875
No 266
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.24 E-value=1.7e-08 Score=80.93 Aligned_cols=224 Identities=17% Similarity=0.217 Sum_probs=139.2
Q ss_pred CCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCce
Q 019405 74 NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCST 153 (341)
Q Consensus 74 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~ 153 (341)
+|.|..||..+|+.+....... ......+. .....+ .+++++.++.+..++...++
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~------~~~~~~~~-~~~~~~--------~v~~~~~~~~l~~~d~~tG~--------- 57 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGP------GIGGPVAT-AVPDGG--------RVYVASGDGNLYALDAKTGK--------- 57 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSS------SCSSEEET-EEEETT--------EEEEEETTSEEEEEETTTSE---------
T ss_pred CCEEEEEECCCCCEEEEEECCC------CCCCccce-EEEeCC--------EEEEEcCCCEEEEEECCCCC---------
Confidence 6899999999999888775411 01222211 222223 67777888889888864332
Q ss_pred EEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeec-CCCCCCccCccCCeeeeEEEEEecCCCCEEEE
Q 019405 154 VKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTA-KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA 232 (341)
Q Consensus 154 v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 232 (341)
.+|.......+.... ...+..+++++.++.|..+|..+|+.++.. .... ..... .......+ .+..++.
T Consensus 58 -~~W~~~~~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~-~~~~~---~~~~~~~~----~~~~~~~ 127 (238)
T PF13360_consen 58 -VLWRFDLPGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSS-PPAGV---RSSSSPAV----DGDRLYV 127 (238)
T ss_dssp -EEEEEECSSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SS-CTCST---B--SEEEE----ETTEEEE
T ss_pred -EEEEeecccccccee-eecccccccccceeeeEecccCCcceeeeeccccc-ccccc---ccccCceE----ecCEEEE
Confidence 345544333322211 224556677778889999999999999884 3221 10000 11222233 4778888
Q ss_pred EeCCCeEEEEEcCCCCceeEEEEecCCC----------e-EEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEecccc
Q 019405 233 GTNDHQVRLYDTSAQRRPVMSFDFRETP----------I-KAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCS 301 (341)
Q Consensus 233 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~ 301 (341)
+..++.|..+|.++++. +......... + ..+.+. ++ .++.+..++.+.-+|+.+++.+.... .
T Consensus 128 ~~~~g~l~~~d~~tG~~-~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~-- 201 (238)
T PF13360_consen 128 GTSSGKLVALDPKTGKL-LWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAVDLATGEKLWSKP-I-- 201 (238)
T ss_dssp EETCSEEEEEETTTTEE-EEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEEETTTTEEEEEEC-S--
T ss_pred EeccCcEEEEecCCCcE-EEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEEECCCCCEEEEec-C--
Confidence 88899999999999875 5555553322 1 222232 44 77777778864444999999765333 2
Q ss_pred CceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeee
Q 019405 302 GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSA 338 (341)
Q Consensus 302 ~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 338 (341)
..+..+ ....+..|+.++.++.|..||+++|+.+.+
T Consensus 202 ~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 202 SGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp S-ECEC-EECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred CCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 223331 346777788777999999999999998764
No 267
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.24 E-value=1.3e-10 Score=93.50 Aligned_cols=159 Identities=16% Similarity=0.186 Sum_probs=109.9
Q ss_pred EEEEecCCCCEEEEeeCCCeEEEEECCCCce----eeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEe---CCCe
Q 019405 166 AFSKVDISEKFSLFGGKGVEVNVWDLDKCEK----IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT---NDHQ 238 (341)
Q Consensus 166 ~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~---~d~~ 238 (341)
..+..++.++++|++..+....++++..... ......+ ..-+++.|. .+...+..+. ....
T Consensus 66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~----------~~~~ai~~~--~~~~sv~v~dkagD~~~ 133 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVP----------KRPTAISFI--REDTSVLVADKAGDVYS 133 (390)
T ss_pred cccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecc----------cCcceeeee--eccceEEEEeecCCcee
Confidence 3445677888999888888877777764332 1111111 112334442 2233333333 3344
Q ss_pred EEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEE
Q 019405 239 VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIAS 318 (341)
Q Consensus 239 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 318 (341)
+.+|....+. ...+-+|-+-++.++|+||+++|+++..|..|++-....-..+..|.-.|..-|..++.-++. .|++
T Consensus 134 ~di~s~~~~~--~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS 210 (390)
T KOG3914|consen 134 FDILSADSGR--CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLS 210 (390)
T ss_pred eeeecccccC--cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeee
Confidence 5555544322 444567989999999999999999999999999988776666666654338999999987655 5899
Q ss_pred EeCCCcEEEEEcCCCceeeee
Q 019405 319 CGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 319 ~~~dg~v~iwd~~~~~~~~~~ 339 (341)
+|.|++|++||+.+|+++.++
T Consensus 211 ~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 211 GSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred cCCCCcEEEEecccCCccccc
Confidence 999999999999999998764
No 268
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.23 E-value=2e-08 Score=87.87 Aligned_cols=213 Identities=12% Similarity=0.072 Sum_probs=124.3
Q ss_pred eEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEc-cc--ceeEEEEeeecccccccCCc
Q 019405 76 LTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT-TK--GKASMRSIEVTKVSAESSCS 152 (341)
Q Consensus 76 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~--g~~~i~~~~~~~~~~~~~~~ 152 (341)
.|.++|.+.+. ...+.. +...+....|.+... .++..+ .+ ..+.+|++....
T Consensus 180 ~l~~~d~~g~~-~~~l~~--------~~~~~~~p~wSpDG~--------~la~~s~~~~~~~l~~~~l~~g~-------- 234 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQ--------SREPILSPRWSPDGK--------RIAYVSFEQKRPRIFVQNLDTGR-------- 234 (430)
T ss_pred EEEEECCCCCC-ceEEec--------CCCceeeeeECCCCC--------EEEEEEcCCCCCEEEEEECCCCC--------
Confidence 47777876443 333332 224455555555444 554443 33 346666664322
Q ss_pred eEEEEEeecCCceEEEEecCCCCEEEE-eeCCC--eEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCE
Q 019405 153 TVKSWNVCASGTIAFSKVDISEKFSLF-GGKGV--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRK 229 (341)
Q Consensus 153 ~v~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 229 (341)
...+.. ..+......|+|||+.|+. ...++ .|++||+.+++... +.... .......| +|+++.
T Consensus 235 ~~~l~~--~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~---------~~~~~~~~--spDg~~ 300 (430)
T PRK00178 235 REQITN--FEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR-VTNHP---------AIDTEPFW--GKDGRT 300 (430)
T ss_pred EEEccC--CCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-cccCC---------CCcCCeEE--CCCCCE
Confidence 111111 1234456899999998874 44444 68888998776433 32221 12345678 899988
Q ss_pred EEEEeC-CC--eEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCC-C--CEEEEECCCCeEEeEEeccccCc
Q 019405 230 FVAGTN-DH--QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS-G--DLASVDIRTGKLLGCFIGKCSGS 303 (341)
Q Consensus 230 l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d-g--~i~iwd~~~~~~~~~~~~~~~~~ 303 (341)
|+..+. ++ .|+++|+.+++ ...+...........|+|+|+.|+....+ + .|.++|+.+++... +.. ...
T Consensus 301 i~f~s~~~g~~~iy~~d~~~g~--~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~--~~~ 375 (430)
T PRK00178 301 LYFTSDRGGKPQIYKVNVNGGR--AERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTD--TSL 375 (430)
T ss_pred EEEEECCCCCceEEEEECCCCC--EEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccC--CCC
Confidence 776654 33 57777877655 23333222334457899999998876643 3 48889998876532 221 122
Q ss_pred eeEEEecCCCCEEEEEeCC---CcEEEEEcCC
Q 019405 304 IRSIARHPTLPIIASCGLD---SYLRFWDIKT 332 (341)
Q Consensus 304 i~~~~~~~~~~~l~s~~~d---g~v~iwd~~~ 332 (341)
.....|+|+|+.++..+.+ ..|.+.++..
T Consensus 376 ~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 376 DESPSVAPNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred CCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 3356899999988776644 2467777753
No 269
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.22 E-value=2.5e-08 Score=87.22 Aligned_cols=157 Identities=13% Similarity=0.104 Sum_probs=97.1
Q ss_pred eEEEEecCCCCEEEE-eeCCCe--EEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeC-CC--e
Q 019405 165 IAFSKVDISEKFSLF-GGKGVE--VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DH--Q 238 (341)
Q Consensus 165 i~~~~~~~~~~~l~~-~~~d~~--v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-d~--~ 238 (341)
.....|+||++.|+. ...++. |+++|+.+++... +..+. .......| +|+++.|+..+. ++ .
T Consensus 264 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~-lt~~~---------~~~~~p~w--SpDG~~I~f~s~~~g~~~ 331 (448)
T PRK04792 264 NGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTR-ITRHR---------AIDTEPSW--HPDGKSLIFTSERGGKPQ 331 (448)
T ss_pred cCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEE-CccCC---------CCccceEE--CCCCCEEEEEECCCCCce
Confidence 346799999998775 455554 8888888765433 22221 22455688 899998876553 33 5
Q ss_pred EEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeC-CC--CEEEEECCCCeEEeEEeccccCceeEEEecCCCCE
Q 019405 239 VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SG--DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPI 315 (341)
Q Consensus 239 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-dg--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 315 (341)
|.++|+.+++ ...+..........+|+|+|++|+..+. ++ .|.++|+.+++... +... .......|+|+|+.
T Consensus 332 Iy~~dl~~g~--~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~--~~d~~ps~spdG~~ 406 (448)
T PRK04792 332 IYRVNLASGK--VSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST--RLDESPSVAPNGTM 406 (448)
T ss_pred EEEEECCCCC--EEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC--CCCCCceECCCCCE
Confidence 6677777654 3333323233445789999998877654 33 46667888776532 2221 12234589999998
Q ss_pred EEEEeCC-C--cEEEEEcCCCceeeee
Q 019405 316 IASCGLD-S--YLRFWDIKTRQLLSAV 339 (341)
Q Consensus 316 l~s~~~d-g--~v~iwd~~~~~~~~~~ 339 (341)
|+..+.+ + .+++++.+ |+....+
T Consensus 407 I~~~~~~~g~~~l~~~~~~-G~~~~~l 432 (448)
T PRK04792 407 VIYSTTYQGKQVLAAVSID-GRFKARL 432 (448)
T ss_pred EEEEEecCCceEEEEEECC-CCceEEC
Confidence 7765543 3 36777764 5544443
No 270
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.21 E-value=3.6e-10 Score=106.60 Aligned_cols=160 Identities=16% Similarity=0.217 Sum_probs=132.1
Q ss_pred CceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEE
Q 019405 163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY 242 (341)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iw 242 (341)
..+.++.-+|...+-++|+.||.|++|....++.+..+..... ..|+.+.| +.+|+.+..+..||.+.+|
T Consensus 2209 ~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~--------s~vtr~~f--~~qGnk~~i~d~dg~l~l~ 2278 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN--------SRVTRSRF--NHQGNKFGIVDGDGDLSLW 2278 (2439)
T ss_pred CceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc--------chhhhhhh--cccCCceeeeccCCceeec
Confidence 4677888899999999999999999999998888877765542 45888899 7889999999999999999
Q ss_pred EcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEe---CCCCEEEEECCCC---eEEeEEeccccCceeEEEecCCCCEE
Q 019405 243 DTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN---GSGDLASVDIRTG---KLLGCFIGKCSGSIRSIARHPTLPII 316 (341)
Q Consensus 243 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~---~dg~i~iwd~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l 316 (341)
... .++....+.|+.....+.|-. ..+++++ .++.+.+||..-. .++. ..| .+.++++++-|..+.|
T Consensus 2279 q~~--pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H-~~gaT~l~~~P~~qll 2351 (2439)
T KOG1064|consen 2279 QAS--PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCH-DGGATVLAYAPKHQLL 2351 (2439)
T ss_pred ccC--CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eec-CCCceEEEEcCcceEE
Confidence 987 356888888999888888865 4666654 3578999997532 2343 555 8899999999999999
Q ss_pred EEEeCCCcEEEEEcCCCceeeee
Q 019405 317 ASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 317 ~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
++||.+|.|++||++..++++++
T Consensus 2352 isggr~G~v~l~D~rqrql~h~~ 2374 (2439)
T KOG1064|consen 2352 ISGGRKGEVCLFDIRQRQLRHTF 2374 (2439)
T ss_pred EecCCcCcEEEeehHHHHHHHHh
Confidence 99999999999999988776653
No 271
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.20 E-value=7.4e-09 Score=90.49 Aligned_cols=158 Identities=12% Similarity=0.072 Sum_probs=104.5
Q ss_pred CCceEEEEecCCCCEEEEeeCC---CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEE-EeCCC
Q 019405 162 SGTIAFSKVDISEKFSLFGGKG---VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA-GTNDH 237 (341)
Q Consensus 162 ~~~i~~~~~~~~~~~l~~~~~d---~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-~~~d~ 237 (341)
...+....|+|||+.|+..+.+ ..|++||+.+++........ .......| +|+++.|+. ...++
T Consensus 217 ~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~----------g~~~~~~w--SPDG~~La~~~~~~g 284 (448)
T PRK04792 217 PEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFP----------GINGAPRF--SPDGKKLALVLSKDG 284 (448)
T ss_pred CCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCC----------CCcCCeeE--CCCCCEEEEEEeCCC
Confidence 4567889999999998876543 36899999877653221111 11335688 899998765 45566
Q ss_pred e--EEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeC-CC--CEEEEECCCCeEEeEEeccccCceeEEEecCC
Q 019405 238 Q--VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SG--DLASVDIRTGKLLGCFIGKCSGSIRSIARHPT 312 (341)
Q Consensus 238 ~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-dg--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~ 312 (341)
. |+++|+.+++ ...+..+.......+|+|+|+.|+..+. ++ .|+++|+.+++.... ... .......+|+|+
T Consensus 285 ~~~Iy~~dl~tg~--~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~-g~~~~~~~~SpD 360 (448)
T PRK04792 285 QPEIYVVDIATKA--LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFE-GEQNLGGSITPD 360 (448)
T ss_pred CeEEEEEECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-ecC-CCCCcCeeECCC
Confidence 4 7777887654 4455555555677899999988876553 33 477778877765332 211 223456789999
Q ss_pred CCEEEEEeCC-C--cEEEEEcCCCce
Q 019405 313 LPIIASCGLD-S--YLRFWDIKTRQL 335 (341)
Q Consensus 313 ~~~l~s~~~d-g--~v~iwd~~~~~~ 335 (341)
|++|+..+.+ + .|.++|+.+++.
T Consensus 361 G~~l~~~~~~~g~~~I~~~dl~~g~~ 386 (448)
T PRK04792 361 GRSMIMVNRTNGKFNIARQDLETGAM 386 (448)
T ss_pred CCEEEEEEecCCceEEEEEECCCCCe
Confidence 9988776543 3 456678877754
No 272
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.17 E-value=1.4e-07 Score=73.35 Aligned_cols=204 Identities=16% Similarity=0.166 Sum_probs=128.5
Q ss_pred eeEEEcccceeEEEEeeecccccccCCceEEEEEeecC--CceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCC
Q 019405 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCAS--GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKP 202 (341)
Q Consensus 125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~--~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~ 202 (341)
.+++.-.|..+.|......- ...+....+... ..=..++|+||+.+||.+...|+|++||+.. ..+..+..
T Consensus 10 k~lAi~qd~~iEiRsa~Ddf------~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p 82 (282)
T PF15492_consen 10 KLLAILQDQCIEIRSAKDDF------SSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPP 82 (282)
T ss_pred cEEEEEeccEEEEEeccCCc------hheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCc
Confidence 77777778888777653221 012233333221 2345789999999999999999999999964 55555544
Q ss_pred CCCCccCccCCeeeeEEEEEecCC-----CCEEEEEeCCCeEEEEEcCCC--C--ceeEEEEe---cCCCeEEEEEcCCC
Q 019405 203 PPKNSLGIFTPTWFTSAAFLSIDD-----HRKFVAGTNDHQVRLYDTSAQ--R--RPVMSFDF---RETPIKAVAEEPDS 270 (341)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~~~~~~~-----~~~l~~~~~d~~i~iwd~~~~--~--~~~~~~~~---~~~~v~~~~~~~~~ 270 (341)
....... -...|..+.|.. +. ...|++-..+|.++-|-+..+ + +..+.+.. +...|.++.++|..
T Consensus 83 ~~~~~~d--~~~Aiagl~Fl~-~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 83 AMSFPGD--LSDAIAGLIFLE-YKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred ccccCCc--cccceeeeEeec-cccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 3211111 124577777752 22 224566667888887765321 1 12333333 35689999999998
Q ss_pred ceEEEEeCCC-----------CEEEEECCCCeE-----------------------Ee-----EEeccccCceeEEEecC
Q 019405 271 FNIYIGNGSG-----------DLASVDIRTGKL-----------------------LG-----CFIGKCSGSIRSIARHP 311 (341)
Q Consensus 271 ~~l~~g~~dg-----------~i~iwd~~~~~~-----------------------~~-----~~~~~~~~~i~~~~~~~ 311 (341)
++|++|+... -+.-|.+-++.+ +. ..++.....|..|..||
T Consensus 160 ~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSP 239 (282)
T PF15492_consen 160 RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSP 239 (282)
T ss_pred CEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECC
Confidence 8888776421 255664432110 00 01122256899999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCceeee
Q 019405 312 TLPIIASCGLDSYLRFWDIKTRQLLSA 338 (341)
Q Consensus 312 ~~~~l~s~~~dg~v~iwd~~~~~~~~~ 338 (341)
||..||+...+|.|.+|++.+-++.++
T Consensus 240 dg~~La~ih~sG~lsLW~iPsL~~~~~ 266 (282)
T PF15492_consen 240 DGSLLACIHFSGSLSLWEIPSLRLQRS 266 (282)
T ss_pred CCCEEEEEEcCCeEEEEecCcchhhcc
Confidence 999999999999999999998665543
No 273
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.15 E-value=1.8e-07 Score=80.81 Aligned_cols=136 Identities=13% Similarity=0.033 Sum_probs=86.8
Q ss_pred CCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEE
Q 019405 174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS 253 (341)
Q Consensus 174 ~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 253 (341)
+..++.++.+|.+..+|..+++.++...... ...+.. .+..++.++.++.+..+|..+++. +-.
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~-----------~~~~~~----~~~~vy~~~~~g~l~ald~~tG~~-~W~ 319 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREYGS-----------VNDFAV----DGGRIYLVDQNDRVYALDTRGGVE-LWS 319 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecCCC-----------ccCcEE----ECCEEEEEcCCCeEEEEECCCCcE-EEc
Confidence 4456666777888888888888777654221 111222 356777778899999999988764 222
Q ss_pred EEe-cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeE-EEecCCCCEEEEEeCCCcEEEEEc
Q 019405 254 FDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRS-IARHPTLPIIASCGLDSYLRFWDI 330 (341)
Q Consensus 254 ~~~-~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~s~~~dg~v~iwd~ 330 (341)
... ......+... .+..|+.++.+|.|+..|..+|+.+.+.+.. ...+.+ ..+ .+..|+.++.||.|+.++.
T Consensus 320 ~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~-~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 320 QSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVD-SSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred ccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcC-CCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 211 1111122222 2457888999999999999999998877643 233322 222 2447888899999988765
No 274
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.14 E-value=1.6e-06 Score=69.81 Aligned_cols=268 Identities=12% Similarity=0.115 Sum_probs=151.9
Q ss_pred CCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEcc-CCeEEEeeCCC-CcchheeeccCCCCCC
Q 019405 23 LGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARK-NGLTDILNPLN-GDLRVAISNAGDSGAQ 100 (341)
Q Consensus 23 ~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~-dg~i~iw~~~~-~~~~~~~~~~~~~~~~ 100 (341)
+|.+..+.+... .|..+++.+......+-+.++++.++. +|+++.. -|.|.++-+.+ |...............
T Consensus 63 ~ggvaay~iD~~-~G~Lt~ln~~~~~g~~p~yvsvd~~g~----~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~ 137 (346)
T COG2706 63 EGGVAAYRIDPD-DGRLTFLNRQTLPGSPPCYVSVDEDGR----FVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSG 137 (346)
T ss_pred cCcEEEEEEcCC-CCeEEEeeccccCCCCCeEEEECCCCC----EEEEEEccCceEEEEEcccCCccccceeeeecCCCC
Confidence 456666666653 354444333322333336777776665 7888764 58899999865 5444333332222222
Q ss_pred CCCC---ceeeEeeeeccccccccccceeEEEcc-cceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCE
Q 019405 101 PEDD---GIVGLHLFKRQREESSSRSRTLLTCTT-KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKF 176 (341)
Q Consensus 101 ~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~ 176 (341)
+++. +-....-+.++.+ .+++..- --.+.+|+++.++.. ......+..+..-..+.|+|++++
T Consensus 138 p~~rQ~~~h~H~a~~tP~~~-------~l~v~DLG~Dri~~y~~~dg~L~------~~~~~~v~~G~GPRHi~FHpn~k~ 204 (346)
T COG2706 138 PHERQESPHVHSANFTPDGR-------YLVVPDLGTDRIFLYDLDDGKLT------PADPAEVKPGAGPRHIVFHPNGKY 204 (346)
T ss_pred CCccccCCccceeeeCCCCC-------EEEEeecCCceEEEEEcccCccc------cccccccCCCCCcceEEEcCCCcE
Confidence 2221 1122333444432 4444432 246667777644321 111222344566789999999999
Q ss_pred EEEee-CCCeEEEEECCCC-ceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeC-CCeEEEEEcCCCCceeEE
Q 019405 177 SLFGG-KGVEVNVWDLDKC-EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DHQVRLYDTSAQRRPVMS 253 (341)
Q Consensus 177 l~~~~-~d~~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~ 253 (341)
.+... .+++|.+|..... ..+..++....-+-......+...+.. +++|++|.++.. ...|.+|.+......+..
T Consensus 205 aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhi--s~dGrFLYasNRg~dsI~~f~V~~~~g~L~~ 282 (346)
T COG2706 205 AYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHI--SPDGRFLYASNRGHDSIAVFSVDPDGGKLEL 282 (346)
T ss_pred EEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEE--CCCCCEEEEecCCCCeEEEEEEcCCCCEEEE
Confidence 88655 4889999998763 333333333222222334466777777 999999988753 347888877654322222
Q ss_pred E---EecCCCeEEEEEcCCCceEEEEeCC-CCEEEEEC--CCCeEEeEEeccccCceeEEEec
Q 019405 254 F---DFRETPIKAVAEEPDSFNIYIGNGS-GDLASVDI--RTGKLLGCFIGKCSGSIRSIARH 310 (341)
Q Consensus 254 ~---~~~~~~v~~~~~~~~~~~l~~g~~d-g~i~iwd~--~~~~~~~~~~~~~~~~i~~~~~~ 310 (341)
. ..+...-+...++|.+++|+++..+ ..|.+|.. .+|++-............|+.|.
T Consensus 283 ~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 283 VGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred EEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 2 2233446789999999999998875 45777754 46665443332113344455553
No 275
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.12 E-value=1.9e-07 Score=77.98 Aligned_cols=257 Identities=15% Similarity=0.124 Sum_probs=148.9
Q ss_pred CCeEEEEEecCccCccceeeeccCCCCC--ce-eEEEeccCCCCCceEEEEccCCeEEEeeCCCCcc----hheee--cc
Q 019405 24 GLIKVIEARGEHGGVPKVVERWGDPHSS--NC-VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL----RVAIS--NA 94 (341)
Q Consensus 24 g~i~~~~~~~~~~g~~~~~~~~~~~~~~--~~-~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~----~~~~~--~~ 94 (341)
..+.+|++..+ .++..|.....+ .- .+.|+.++. |+|=- ....+.|+++ +... .+.++ +.
T Consensus 108 n~~~vwd~~sg-----~iv~sf~~~~q~~~~Wp~~k~s~~D~----y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi 176 (561)
T COG5354 108 NNVFVWDIASG-----MIVFSFNGISQPYLGWPVLKFSIDDK----YVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGI 176 (561)
T ss_pred CceeEEeccCc-----eeEeeccccCCcccccceeeeeecch----hhhhh-ccCeEEEEec-CCccccCchhhccccce
Confidence 34678888776 566666554333 33 667888777 43332 3467999996 3221 11111 11
Q ss_pred CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC
Q 019405 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (341)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~ 174 (341)
.+..+++..+.-. +++|.+.. ....+.+++|.+....... +..++.+ .-..+.|++.|
T Consensus 177 ~dFsisP~~n~~~-la~~tPEk------------~~kpa~~~i~sIp~~s~l~-----tk~lfk~----~~~qLkW~~~g 234 (561)
T COG5354 177 LDFSISPEGNHDE-LAYWTPEK------------LNKPAMVRILSIPKNSVLV-----TKNLFKV----SGVQLKWQVLG 234 (561)
T ss_pred eeEEecCCCCCce-EEEEcccc------------CCCCcEEEEEEccCCCeee-----eeeeEee----cccEEEEecCC
Confidence 1111122211111 33333332 1345667777765433211 2222332 22356777777
Q ss_pred CEEEEee-----------CCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEE--eCCCeEEE
Q 019405 175 KFSLFGG-----------KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG--TNDHQVRL 241 (341)
Q Consensus 175 ~~l~~~~-----------~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~--~~d~~i~i 241 (341)
++++.-- ....+++++++.... ..... -.++|...+| .|.++.+++. ..+-.+.+
T Consensus 235 ~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i-~V~~~---------~~~pVhdf~W--~p~S~~F~vi~g~~pa~~s~ 302 (561)
T COG5354 235 KYLLVLVMTHTKSNKSYFGESNLYLLRITERSI-PVEKD---------LKDPVHDFTW--EPLSSRFAVISGYMPASVSV 302 (561)
T ss_pred ceEEEEEEEeeecccceeccceEEEEeeccccc-ceecc---------ccccceeeee--cccCCceeEEecccccceee
Confidence 7766321 124577777763221 11111 1266999999 7777766654 57888999
Q ss_pred EEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCC---CCEEEEECCCCeEE-eEEeccccCceeEEEecCCCCEEE
Q 019405 242 YDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS---GDLASVDIRTGKLL-GCFIGKCSGSIRSIARHPTLPIIA 317 (341)
Q Consensus 242 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d---g~i~iwd~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~ 317 (341)
+|++.. ... ...+..=..+.|+|.+++++.++-| |.+.+||....... ..+.+. ...-+.|+|+++++.
T Consensus 303 ~~lr~N--l~~--~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~---n~s~~~wspd~qF~~ 375 (561)
T COG5354 303 FDLRGN--LRF--YFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL---NTSYCDWSPDGQFYD 375 (561)
T ss_pred cccccc--eEE--ecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC---CceEeeccCCceEEE
Confidence 999963 132 2334455678899999999987755 77999998765443 366554 345567999999887
Q ss_pred EEe------CCCcEEEEEcCC
Q 019405 318 SCG------LDSYLRFWDIKT 332 (341)
Q Consensus 318 s~~------~dg~v~iwd~~~ 332 (341)
+.. .|..|.|||+..
T Consensus 376 ~~~ts~k~~~Dn~i~l~~v~g 396 (561)
T COG5354 376 TDTTSEKLRVDNSIKLWDVYG 396 (561)
T ss_pred ecCCCcccccCcceEEEEecC
Confidence 664 578899999964
No 276
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.12 E-value=5.7e-07 Score=74.71 Aligned_cols=234 Identities=12% Similarity=0.132 Sum_probs=138.0
Q ss_pred CCCCeEEEEEecCccCccceeeeccCCCC-------CceeEEEeccCCCCCceEEEEc-c-CCeEEEeeCCCCcchheee
Q 019405 22 SLGLIKVIEARGEHGGVPKVVERWGDPHS-------SNCVLAASIDDSQNDPLLAVAR-K-NGLTDILNPLNGDLRVAIS 92 (341)
Q Consensus 22 ~~g~i~~~~~~~~~~g~~~~~~~~~~~~~-------~~~~~~~s~~~~~~~~~l~~~~-~-dg~i~iw~~~~~~~~~~~~ 92 (341)
.++.|.+|++.+. +++..+.-... ....+++++|++ +|++.. . +..|.+.|+.+++.+.++.
T Consensus 75 ~~d~V~v~D~~t~-----~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk----~l~V~n~~p~~~V~VvD~~~~kvv~ei~ 145 (352)
T TIGR02658 75 RTDYVEVIDPQTH-----LPIADIELPEGPRFLVGTYPWMTSLTPDNK----TLLFYQFSPSPAVGVVDLEGKAFVRMMD 145 (352)
T ss_pred CCCEEEEEECccC-----cEEeEEccCCCchhhccCccceEEECCCCC----EEEEecCCCCCEEEEEECCCCcEEEEEe
Confidence 6788899998886 55544432211 122456666665 777665 3 7899999999999988887
Q ss_pred ccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeec----CCceEEE
Q 019405 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA----SGTIAFS 168 (341)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~----~~~i~~~ 168 (341)
.- + |...+..... .+..-+.||......++..... ......+++... ..+
T Consensus 146 vp---------~---~~~vy~t~e~-------~~~~~~~Dg~~~~v~~d~~g~~---~~~~~~vf~~~~~~v~~rP---- 199 (352)
T TIGR02658 146 VP---------D---CYHIFPTAND-------TFFMHCRDGSLAKVGYGTKGNP---KIKPTEVFHPEDEYLINHP---- 199 (352)
T ss_pred CC---------C---CcEEEEecCC-------ccEEEeecCceEEEEecCCCce---EEeeeeeecCCccccccCC----
Confidence 51 1 1111111110 2223334554444333322110 011122222210 111
Q ss_pred EecC-CCCEEEEeeCCCeEEEEECCCCc-----eeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEe--------
Q 019405 169 KVDI-SEKFSLFGGKGVEVNVWDLDKCE-----KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-------- 234 (341)
Q Consensus 169 ~~~~-~~~~l~~~~~d~~v~i~d~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-------- 234 (341)
.+.+ +++++..... |.|.+.|+.... ....+...... .--.+....-+++ +++++++.+..
T Consensus 200 ~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~--~~wrP~g~q~ia~--~~dg~~lyV~~~~~~~~th 274 (352)
T TIGR02658 200 AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKA--DGWRPGGWQQVAY--HRARDRIYLLADQRAKWTH 274 (352)
T ss_pred ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccc--cccCCCcceeEEE--cCCCCEEEEEecCCccccc
Confidence 3345 7777776666 999999964432 22222111100 0012344555888 78888888743
Q ss_pred --CCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCc-eEEEEe-CCCCEEEEECCCCeEEeEEe
Q 019405 235 --NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSF-NIYIGN-GSGDLASVDIRTGKLLGCFI 297 (341)
Q Consensus 235 --~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~g~-~dg~i~iwd~~~~~~~~~~~ 297 (341)
..+.|.++|..+.+. +..+.. ...+..++++||++ +|++.+ .++.|.++|..+++.+.++.
T Consensus 275 k~~~~~V~ViD~~t~kv-i~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 275 KTASRFLFVVDAKTGKR-LRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred cCCCCEEEEEECCCCeE-EEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 125799999998765 555553 35789999999999 888777 57889999999999998883
No 277
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.11 E-value=3.9e-10 Score=94.76 Aligned_cols=213 Identities=14% Similarity=0.178 Sum_probs=143.7
Q ss_pred CCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEE-eecCCceEEEEecCCCCEEE
Q 019405 100 QPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN-VCASGTIAFSKVDISEKFSL 178 (341)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~-~~~~~~i~~~~~~~~~~~l~ 178 (341)
.+|...+..+...+..+ .+++++.|.++++|++....+..+. ....|. ..|..+|..+.|-.+-++++
T Consensus 732 ~GH~~~iRai~AidNEN--------SFiSASkDKTVKLWSik~EgD~~~t---saCQfTY~aHkk~i~~igfL~~lr~i~ 800 (1034)
T KOG4190|consen 732 TGHQEKIRAIAAIDNEN--------SFISASKDKTVKLWSIKPEGDEIGT---SACQFTYQAHKKPIHDIGFLADLRSIA 800 (1034)
T ss_pred cCcHHHhHHHHhccccc--------ceeeccCCceEEEEEeccccCcccc---ceeeeEhhhccCcccceeeeeccceee
Confidence 44556666666666666 8999999999999999755432111 112222 24678899999988888887
Q ss_pred EeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEE-eCCCeEEEEEcCCCCceeEEEE--
Q 019405 179 FGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG-TNDHQVRLYDTSAQRRPVMSFD-- 255 (341)
Q Consensus 179 ~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~-- 255 (341)
+ .||.|++||.--++.+......... +.+..+...++-+...++.+ +...+|+++|.+..+- ...++
T Consensus 801 S--cD~giHlWDPFigr~Laq~~dapk~-------~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~-~~E~kVc 870 (1034)
T KOG4190|consen 801 S--CDGGIHLWDPFIGRLLAQMEDAPKE-------GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEW-TCELKVC 870 (1034)
T ss_pred e--ccCcceeecccccchhHhhhcCccc-------CCCceeEecccCcchheeeeccchhhheeeecccccc-eeeEEec
Confidence 5 5788999998877776544433221 11222222223344455554 6788999999997552 33333
Q ss_pred ---ecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEE-EEcC
Q 019405 256 ---FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRF-WDIK 331 (341)
Q Consensus 256 ---~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~i-wd~~ 331 (341)
+.+.-+++++..+.|++++++-..|.|.+.|.++|+.+..++.- +-....++- |..+.|+....|.++.+ |..-
T Consensus 871 na~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpm-ecdllqlaa-psdq~L~~saldHslaVnWhal 948 (1034)
T KOG4190|consen 871 NAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPM-ECDLLQLAA-PSDQALAQSALDHSLAVNWHAL 948 (1034)
T ss_pred cCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcc-cchhhhhcC-chhHHHHhhcccceeEeeehhc
Confidence 23456889999999999999999999999999999998877654 333444432 55566777777777777 7655
Q ss_pred CCce
Q 019405 332 TRQL 335 (341)
Q Consensus 332 ~~~~ 335 (341)
+|..
T Consensus 949 dgim 952 (1034)
T KOG4190|consen 949 DGIM 952 (1034)
T ss_pred CCee
Confidence 5543
No 278
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.09 E-value=1.4e-09 Score=94.36 Aligned_cols=190 Identities=12% Similarity=0.167 Sum_probs=138.0
Q ss_pred eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC-CEEEEeeCCCeEEEEECCCCc-eeeecCC
Q 019405 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCE-KIWTAKP 202 (341)
Q Consensus 125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~-~~~~~~~ 202 (341)
+-++........+|++... .++.|...-..|...|+.+.|+|+. ..+++++.|-.+..||+++.. ++.....
T Consensus 83 ~wiVsts~qkaiiwnlA~s------s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~ 156 (1081)
T KOG0309|consen 83 YWIVSTSNQKAIIWNLAKS------SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSS 156 (1081)
T ss_pred eeEEecCcchhhhhhhhcC------CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeec
Confidence 4555556677788987643 4557777777788999999999854 678999999999999998743 2333222
Q ss_pred CCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCC-CceEEEEeCCCC
Q 019405 203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPD-SFNIYIGNGSGD 281 (341)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~g~~dg~ 281 (341)
-. .....+.| +.....+++.+..+.|++||.+.+..|+..+++|...|..+.|..- ...+.+.+.|++
T Consensus 157 w~---------s~asqVkw--nyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~t 225 (1081)
T KOG0309|consen 157 WR---------SAASQVKW--NYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGT 225 (1081)
T ss_pred cc---------ccCceeee--cccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCc
Confidence 21 33566788 4444445555677789999999999899999999989999988652 246778889999
Q ss_pred EEEEECCC-------------------------------------------------------CeEEeEEeccccCceeE
Q 019405 282 LASVDIRT-------------------------------------------------------GKLLGCFIGKCSGSIRS 306 (341)
Q Consensus 282 i~iwd~~~-------------------------------------------------------~~~~~~~~~~~~~~i~~ 306 (341)
|+.||... .++++.|.+| .+.|..
T Consensus 226 vkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH-~D~V~e 304 (1081)
T KOG0309|consen 226 VKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGH-DDVVLE 304 (1081)
T ss_pred eeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCc-chHHHH
Confidence 99998542 1345566676 666665
Q ss_pred EEecCCC--------C--EEEEEeCCCcEEEEEcCC
Q 019405 307 IARHPTL--------P--IIASCGLDSYLRFWDIKT 332 (341)
Q Consensus 307 ~~~~~~~--------~--~l~s~~~dg~v~iwd~~~ 332 (341)
..|-..+ + .|+|=|.|..+++|-+.+
T Consensus 305 FlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 305 FLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred HhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 5554322 1 699999999999998864
No 279
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.09 E-value=2.2e-07 Score=77.14 Aligned_cols=146 Identities=15% Similarity=0.125 Sum_probs=109.4
Q ss_pred eecCCceEEEEecCCCCEEEEeeCCC-eEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCC
Q 019405 159 VCASGTIAFSKVDISEKFSLFGGKGV-EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH 237 (341)
Q Consensus 159 ~~~~~~i~~~~~~~~~~~l~~~~~d~-~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~ 237 (341)
+.+.+.|.-..+..+++-++.|..|| .+-+||.++++........ +.|.++.. +++|++++.+....
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~l----------g~I~av~v--s~dGK~~vvaNdr~ 423 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDL----------GNIEAVKV--SPDGKKVVVANDRF 423 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCc----------cceEEEEE--cCCCcEEEEEcCce
Confidence 34455666667777777889999998 8999999988754433322 44888998 99999999999999
Q ss_pred eEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCC----CEEEEECCCCeEEeEEeccccCceeEEEecCCC
Q 019405 238 QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG----DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL 313 (341)
Q Consensus 238 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg----~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~ 313 (341)
.|.+.|+.+++. ...-+...+-|+.+.|||+++++|-+.-+| .|+++|+..++....-. . .+.=.+-+|.|++
T Consensus 424 el~vididngnv-~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~-ta~DfsPaFD~d~ 500 (668)
T COG4946 424 ELWVIDIDNGNV-RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-P-TAYDFSPAFDPDG 500 (668)
T ss_pred EEEEEEecCCCe-eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-C-cccccCcccCCCC
Confidence 999999999874 333344556799999999999999776554 59999999877654332 2 3344567899999
Q ss_pred CEEEEE
Q 019405 314 PIIASC 319 (341)
Q Consensus 314 ~~l~s~ 319 (341)
++|.--
T Consensus 501 ryLYfL 506 (668)
T COG4946 501 RYLYFL 506 (668)
T ss_pred cEEEEE
Confidence 976544
No 280
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.08 E-value=3.1e-09 Score=80.96 Aligned_cols=74 Identities=22% Similarity=0.241 Sum_probs=63.3
Q ss_pred eeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcC-CCceEEEEeCCCCEEEEECCC
Q 019405 215 WFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEP-DSFNIYIGNGSGDLASVDIRT 289 (341)
Q Consensus 215 ~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~~ 289 (341)
.|.+++-+|. ...++++|+.||.+-+||.+....|+..+..|+.+++.+-|+| ++..|++++.||.+..||..+
T Consensus 181 ~v~~l~~hp~-qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 181 AVTALCSHPA-QQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cchhhhCCcc-cccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 3778887533 3457888999999999999998777888889999999999999 558899999999999999864
No 281
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.08 E-value=9.3e-08 Score=83.03 Aligned_cols=134 Identities=15% Similarity=0.084 Sum_probs=86.3
Q ss_pred eEEEEecCCCCEEEEee-CCCe--EEEEECCC-CceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCC---C
Q 019405 165 IAFSKVDISEKFSLFGG-KGVE--VNVWDLDK-CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND---H 237 (341)
Q Consensus 165 i~~~~~~~~~~~l~~~~-~d~~--v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---~ 237 (341)
....+|+|||+.|+..+ .+|. |.++++.. +.....+.... ..+....| +|+|++|+....+ .
T Consensus 283 ~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~---------~~~~~p~w--SPDG~~Laf~~~~~g~~ 351 (428)
T PRK01029 283 QGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKY---------RNSSCPAW--SPDGKKIAFCSVIKGVR 351 (428)
T ss_pred cCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCC---------CCccceeE--CCCCCEEEEEEcCCCCc
Confidence 45679999999888665 4554 44445432 22222222211 23556788 8999998876543 4
Q ss_pred eEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeC---CCCEEEEECCCCeEEeEEeccccCceeEEEecCCC
Q 019405 238 QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG---SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL 313 (341)
Q Consensus 238 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~---dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~ 313 (341)
.|.+||+.+++ ...+......+....|+|+|+.|+.... ...|+++|+..++...... . .+.+...+|+|-.
T Consensus 352 ~I~v~dl~~g~--~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~-~-~g~~~~p~Ws~~~ 426 (428)
T PRK01029 352 QICVYDLATGR--DYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI-G-SGEKRFPSWGAFP 426 (428)
T ss_pred EEEEEECCCCC--eEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-C-CCcccCceecCCC
Confidence 69999998765 3444433345678999999988775433 3568999998776544443 2 4567778888754
No 282
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.08 E-value=3.8e-09 Score=88.95 Aligned_cols=273 Identities=10% Similarity=0.061 Sum_probs=171.0
Q ss_pred ceeeeecCCCCeEEEEEecCccC--ccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheee
Q 019405 15 LRALTFDSLGLIKVIEARGEHGG--VPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS 92 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 92 (341)
..++++++|.++|+|.+..+..+ .-....+|..|..++..+.|-.+.. +++ +.||-|.+||.--++.+..+.
T Consensus 748 NSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr----~i~--ScD~giHlWDPFigr~Laq~~ 821 (1034)
T KOG4190|consen 748 NSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR----SIA--SCDGGIHLWDPFIGRLLAQME 821 (1034)
T ss_pred cceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc----eee--eccCcceeecccccchhHhhh
Confidence 45788999999999999887333 2235567888999999998877665 344 447999999998887766543
Q ss_pred ccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeec---C-CceEEE
Q 019405 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA---S-GTIAFS 168 (341)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~---~-~~i~~~ 168 (341)
.. ......+.+.|+.-....- .++.++...+++++|.+... -+..|.+.. . .-+.++
T Consensus 822 da---pk~~a~~~ikcl~nv~~~i--------liAgcsaeSTVKl~DaRsce--------~~~E~kVcna~~Pna~~R~i 882 (1034)
T KOG4190|consen 822 DA---PKEGAGGNIKCLENVDRHI--------LIAGCSAESTVKLFDARSCE--------WTCELKVCNAPGPNALTRAI 882 (1034)
T ss_pred cC---cccCCCceeEecccCcchh--------eeeeccchhhheeeeccccc--------ceeeEEeccCCCCchheeEE
Confidence 21 1111223343433322221 33344777889998865433 334444432 2 457899
Q ss_pred EecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEE-EEcCCC
Q 019405 169 KVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL-YDTSAQ 247 (341)
Q Consensus 169 ~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~i-wd~~~~ 247 (341)
++.+.|+.++.+-.+|.|.+.|.++|+.+..........+ .++ .|....++....|.++.+ |-...+
T Consensus 883 aVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdll---------qla---apsdq~L~~saldHslaVnWhaldg 950 (1034)
T KOG4190|consen 883 AVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLL---------QLA---APSDQALAQSALDHSLAVNWHALDG 950 (1034)
T ss_pred EeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhh---------hhc---CchhHHHHhhcccceeEeeehhcCC
Confidence 9999999999999999999999999998876665443222 222 356667788788888888 876554
Q ss_pred CceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECC-C---CeEEeEEec-cccCceeEEEecCCCCEEEEEeCC
Q 019405 248 RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR-T---GKLLGCFIG-KCSGSIRSIARHPTLPIIASCGLD 322 (341)
Q Consensus 248 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~-~---~~~~~~~~~-~~~~~i~~~~~~~~~~~l~s~~~d 322 (341)
.. ..+.+....+...+ -.-|.-|++....+.+.+|--. . ...+.+++. ...+..++++--|-..-++.|...
T Consensus 951 im-h~q~kpppepahfl--qsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~ 1027 (1034)
T KOG4190|consen 951 IM-HLQDKPPPEPAHFL--QSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEH 1027 (1034)
T ss_pred ee-eeccCCCCcchhhh--hccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCC
Confidence 32 22222221222111 1234556666666667776311 0 011111211 114567888888877777888888
Q ss_pred CcEEE
Q 019405 323 SYLRF 327 (341)
Q Consensus 323 g~v~i 327 (341)
|.|.+
T Consensus 1028 G~IaL 1032 (1034)
T KOG4190|consen 1028 GAIAL 1032 (1034)
T ss_pred Cceee
Confidence 88875
No 283
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.08 E-value=1.5e-06 Score=72.33 Aligned_cols=148 Identities=19% Similarity=0.194 Sum_probs=114.8
Q ss_pred CCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCC-eEEEEEcCCCCcee
Q 019405 173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH-QVRLYDTSAQRRPV 251 (341)
Q Consensus 173 ~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~ 251 (341)
+|.+++..+.. ...+.+...+-.+.. .++..|.-..+ ..+++-++.|..|| .+-|+|..+++ +
T Consensus 331 ~Gd~ia~VSRG-kaFi~~~~~~~~iqv-----------~~~~~VrY~r~--~~~~e~~vigt~dgD~l~iyd~~~~e--~ 394 (668)
T COG4946 331 NGDYIALVSRG-KAFIMRPWDGYSIQV-----------GKKGGVRYRRI--QVDPEGDVIGTNDGDKLGIYDKDGGE--V 394 (668)
T ss_pred CCcEEEEEecC-cEEEECCCCCeeEEc-----------CCCCceEEEEE--ccCCcceEEeccCCceEEEEecCCce--E
Confidence 57888877764 677766554433322 12344777777 55666888999998 89999999865 5
Q ss_pred EEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCC----cEEE
Q 019405 252 MSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDS----YLRF 327 (341)
Q Consensus 252 ~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg----~v~i 327 (341)
+.+...-+.|.++..+|+|+.++++.....|.+.|+.++.....-+.. .+-|+...|||+++++|-+--+| .|++
T Consensus 395 kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~-~~lItdf~~~~nsr~iAYafP~gy~tq~Ikl 473 (668)
T COG4946 395 KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSE-YGLITDFDWHPNSRWIAYAFPEGYYTQSIKL 473 (668)
T ss_pred EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccc-cceeEEEEEcCCceeEEEecCcceeeeeEEE
Confidence 666667788999999999999999999999999999999775544444 78899999999999999876655 7899
Q ss_pred EEcCCCceee
Q 019405 328 WDIKTRQLLS 337 (341)
Q Consensus 328 wd~~~~~~~~ 337 (341)
+|+..++...
T Consensus 474 ydm~~~Kiy~ 483 (668)
T COG4946 474 YDMDGGKIYD 483 (668)
T ss_pred EecCCCeEEE
Confidence 9999877543
No 284
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.07 E-value=5.4e-07 Score=70.23 Aligned_cols=217 Identities=19% Similarity=0.120 Sum_probs=120.4
Q ss_pred ceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcc
Q 019405 52 NCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT 131 (341)
Q Consensus 52 ~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (341)
=.-++||+|.. +||.+...|+|+++|+.. ..+..+....... ..-...+.++.+.+.... ......|++-..
T Consensus 46 WRkl~WSpD~t----lLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~-~d~~~Aiagl~Fl~~~~s--~~ws~ELlvi~Y 117 (282)
T PF15492_consen 46 WRKLAWSPDCT----LLAYAESTGTIRVFDLMG-SELFVIPPAMSFP-GDLSDAIAGLIFLEYKKS--AQWSYELLVINY 117 (282)
T ss_pred heEEEECCCCc----EEEEEcCCCeEEEEeccc-ceeEEcCcccccC-CccccceeeeEeeccccc--cccceeEEEEec
Confidence 35678886666 899999999999999964 4444444321110 012366777777666532 223347777888
Q ss_pred cceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCcc
Q 019405 132 KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIF 211 (341)
Q Consensus 132 ~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~ 211 (341)
.|.++-+-+...... .........+.......|.++.++|..++|++||.... +.+. .....
T Consensus 118 ~G~L~Sy~vs~gt~q-~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~--s~a~~--------- 179 (282)
T PF15492_consen 118 RGQLRSYLVSVGTNQ-GYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM--SKASS--------- 179 (282)
T ss_pred cceeeeEEEEcccCC-cceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc--ccccc---------
Confidence 888888877432211 01111112222233567999999999888888775422 0000 00000
Q ss_pred CCeeeeEEEEEe-cCCCCEEEEEeCCCe------EEEEEcCCCCceeEEE-EecCCCeEEEEEcCCCceEEEEeCCCCEE
Q 019405 212 TPTWFTSAAFLS-IDDHRKFVAGTNDHQ------VRLYDTSAQRRPVMSF-DFRETPIKAVAEEPDSFNIYIGNGSGDLA 283 (341)
Q Consensus 212 ~~~~v~~~~~~~-~~~~~~l~~~~~d~~------i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~g~~dg~i~ 283 (341)
..+++-.... .|... .++...|+. -.+|.+-+.+ .... ......|..|..||||..||+...+|.|.
T Consensus 180 --~GLtaWRiL~~~Pyyk-~v~~~~~~~~~~~~~~~~~~~~~~~--~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~ls 254 (282)
T PF15492_consen 180 --CGLTAWRILSDSPYYK-QVTSSEDDITASSKRRGLLRIPSFK--FFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLS 254 (282)
T ss_pred --cCceEEEEcCCCCcEE-EccccCccccccccccceeecccee--eeeccccCCCceEEEEECCCCCEEEEEEcCCeEE
Confidence 0011111110 01111 111221211 1222222211 1111 12356799999999999999999999999
Q ss_pred EEECCCCeEEeEEecc
Q 019405 284 SVDIRTGKLLGCFIGK 299 (341)
Q Consensus 284 iwd~~~~~~~~~~~~~ 299 (341)
+|++.+-++..++...
T Consensus 255 LW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 255 LWEIPSLRLQRSWKQD 270 (282)
T ss_pred EEecCcchhhcccchh
Confidence 9999988777776543
No 285
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.06 E-value=1e-07 Score=83.63 Aligned_cols=110 Identities=25% Similarity=0.268 Sum_probs=87.1
Q ss_pred CEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEE---------EeCCCCEEEEECCCCeE--EeEE
Q 019405 228 RKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYI---------GNGSGDLASVDIRTGKL--LGCF 296 (341)
Q Consensus 228 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~---------g~~dg~i~iwd~~~~~~--~~~~ 296 (341)
.+++.|...|+|.++|+.++.. ...+..|...|.++.|-...+++-. |+.-+.+.+-|+++|.. .+.+
T Consensus 438 pLvAvGT~sGTV~vvdvst~~v-~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l 516 (1062)
T KOG1912|consen 438 PLVAVGTNSGTVDVVDVSTNAV-AASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGL 516 (1062)
T ss_pred eeEEeecCCceEEEEEecchhh-hhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccC
Confidence 3688999999999999998654 6777889999999999766554432 22335588889999854 4444
Q ss_pred eccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeee
Q 019405 297 IGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSA 338 (341)
Q Consensus 297 ~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 338 (341)
++..+.+|..+..+..+++|+..-.|.-+.+||+++..+++.
T Consensus 517 ~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~ 558 (1062)
T KOG1912|consen 517 QKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRL 558 (1062)
T ss_pred CCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHH
Confidence 565678999999999999999999999999999988766543
No 286
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.02 E-value=5.4e-07 Score=84.85 Aligned_cols=212 Identities=13% Similarity=0.082 Sum_probs=137.5
Q ss_pred CCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEee
Q 019405 102 EDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG 181 (341)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~ 181 (341)
..+.++++.++.... .++.+..+|.+.+...+... ....+.+-. .-...|.+++|+||+..++..+
T Consensus 74 ~~~~ivs~~yl~d~~--------~l~~~~~~Gdi~~~~~~~~~-----~~~~~E~VG-~vd~GI~a~~WSPD~Ella~vT 139 (928)
T PF04762_consen 74 PNDKIVSFQYLADSE--------SLCIALASGDIILVREDPDP-----DEDEIEIVG-SVDSGILAASWSPDEELLALVT 139 (928)
T ss_pred CCCcEEEEEeccCCC--------cEEEEECCceEEEEEccCCC-----CCceeEEEE-EEcCcEEEEEECCCcCEEEEEe
Confidence 457899999998887 89999999999988433211 122333322 1246899999999999999999
Q ss_pred CCCeEEEEECCC-----------------------CceeeecCCCCCCc---------------cCccCCeeeeEEEEEe
Q 019405 182 KGVEVNVWDLDK-----------------------CEKIWTAKPPPKNS---------------LGIFTPTWFTSAAFLS 223 (341)
Q Consensus 182 ~d~~v~i~d~~~-----------------------~~~~~~~~~~~~~~---------------~~~~~~~~v~~~~~~~ 223 (341)
.+++|.+.+-.= |+....|++..... ..+.....-..++|
T Consensus 140 ~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISW-- 217 (928)
T PF04762_consen 140 GEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISW-- 217 (928)
T ss_pred CCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEE--
Confidence 998887764210 11112222211111 00002224567889
Q ss_pred cCCCCEEEEEeC------CCeEEEEEcCCCCceeEEEEe-cCCCeEEEEEcCCCceEEEEeC---CCCEEEEECCCCeEE
Q 019405 224 IDDHRKFVAGTN------DHQVRLYDTSAQRRPVMSFDF-RETPIKAVAEEPDSFNIYIGNG---SGDLASVDIRTGKLL 293 (341)
Q Consensus 224 ~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~g~~---dg~i~iwd~~~~~~~ 293 (341)
..||.++|+.+. -+.+|+|+.. +. +..... -.+--.+++|.|.|.+||+.-. .-.|.+|. ++|..-
T Consensus 218 RGDG~yFAVss~~~~~~~~R~iRVy~Re-G~--L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrh 293 (928)
T PF04762_consen 218 RGDGEYFAVSSVEPETGSRRVIRVYSRE-GE--LQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRH 293 (928)
T ss_pred CCCCcEEEEEEEEcCCCceeEEEEECCC-ce--EEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEe
Confidence 899999998775 2579999866 33 222211 1122346899999999988764 23466665 455444
Q ss_pred eEEec---cccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCc
Q 019405 294 GCFIG---KCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ 334 (341)
Q Consensus 294 ~~~~~---~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 334 (341)
..|.- +....|..+.|++++..||..-.|. |.+|-..+..
T Consensus 294 geF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH 336 (928)
T PF04762_consen 294 GEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH 336 (928)
T ss_pred eeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE
Confidence 44432 2256899999999999999987665 9999887754
No 287
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.01 E-value=4e-09 Score=80.43 Aligned_cols=150 Identities=15% Similarity=0.205 Sum_probs=95.0
Q ss_pred ecCCCCEEEEeeCCCeEEEEECCCCceee-ecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEe-----CCCeEEEEE
Q 019405 170 VDISEKFSLFGGKGVEVNVWDLDKCEKIW-TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-----NDHQVRLYD 243 (341)
Q Consensus 170 ~~~~~~~l~~~~~d~~v~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-----~d~~i~iwd 243 (341)
.+-.++.+++++.||.+.+++.+.-..+. ....... . -.+.++ -..++++.++. .-+..+.|+
T Consensus 97 ~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~---~------~as~~~--~~~~~~i~s~~~g~~n~~d~~~a~~ 165 (319)
T KOG4714|consen 97 CTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHS---G------SASRKI--CRHGNSILSGGCGNWNAQDNFYANT 165 (319)
T ss_pred ccccCCceEecCCCceEEEEechHHHhhhhhcccccc---c------ccccce--eecccEEecCCcceEeeccceeeec
Confidence 33356789999999999999987621111 1111100 0 111122 11233333321 123456677
Q ss_pred cCCCCceeEEEEecCCCeEEEEEcCCC-ceEEEEeCCCCEEEEECCCCeEE-eEEeccccCceeEEEecCC-CCEEEEEe
Q 019405 244 TSAQRRPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLL-GCFIGKCSGSIRSIARHPT-LPIIASCG 320 (341)
Q Consensus 244 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~iwd~~~~~~~-~~~~~~~~~~i~~~~~~~~-~~~l~s~~ 320 (341)
++..+..+...+ ....|++++-+|.. +.+++|+.||.+.+||.++.... ..++.| +.+|+.+-|+|. +..|++++
T Consensus 166 ~~p~~t~~~~~~-~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ah-k~~i~eV~FHpk~p~~Lft~s 243 (319)
T KOG4714|consen 166 LDPIKTLIPSKK-ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAH-KAEIWEVHFHPKNPEHLFTCS 243 (319)
T ss_pred cccccccccccc-ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHh-hhhhhheeccCCCchheeEec
Confidence 665332111112 22348999999955 56778889999999999987543 344566 999999999995 55899999
Q ss_pred CCCcEEEEEcCC
Q 019405 321 LDSYLRFWDIKT 332 (341)
Q Consensus 321 ~dg~v~iwd~~~ 332 (341)
.||.+..||..+
T Consensus 244 edGslw~wdas~ 255 (319)
T KOG4714|consen 244 EDGSLWHWDAST 255 (319)
T ss_pred CCCcEEEEcCCC
Confidence 999999999874
No 288
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.00 E-value=1.9e-09 Score=59.34 Aligned_cols=39 Identities=44% Similarity=0.624 Sum_probs=36.8
Q ss_pred CeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEE
Q 019405 290 GKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWD 329 (341)
Q Consensus 290 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd 329 (341)
++++.++.+| .+.|++|+|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h-~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGH-SSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESS-SSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCC-CCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4678899998 99999999999999999999999999997
No 289
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.00 E-value=3.4e-06 Score=67.96 Aligned_cols=210 Identities=19% Similarity=0.126 Sum_probs=131.2
Q ss_pred CceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecc
Q 019405 65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK 144 (341)
Q Consensus 65 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~ 144 (341)
+.++++--..+.|..|+..+++.. .+.. ....++.+...++ .++.+...+... +++...
T Consensus 12 g~l~~~D~~~~~i~~~~~~~~~~~-~~~~----------~~~~G~~~~~~~g--------~l~v~~~~~~~~-~d~~~g- 70 (246)
T PF08450_consen 12 GRLYWVDIPGGRIYRVDPDTGEVE-VIDL----------PGPNGMAFDRPDG--------RLYVADSGGIAV-VDPDTG- 70 (246)
T ss_dssp TEEEEEETTTTEEEEEETTTTEEE-EEES----------SSEEEEEEECTTS--------EEEEEETTCEEE-EETTTT-
T ss_pred CEEEEEEcCCCEEEEEECCCCeEE-EEec----------CCCceEEEEccCC--------EEEEEEcCceEE-EecCCC-
Confidence 446777777899999999776442 2332 2255555553334 666666555443 355332
Q ss_pred cccccCCceEE-EEEee----cCCceEEEEecCCCCEEEEeeCC--------CeEEEEECCCCceeeecCCCCCCccCcc
Q 019405 145 VSAESSCSTVK-SWNVC----ASGTIAFSKVDISEKFSLFGGKG--------VEVNVWDLDKCEKIWTAKPPPKNSLGIF 211 (341)
Q Consensus 145 ~~~~~~~~~v~-~~~~~----~~~~i~~~~~~~~~~~l~~~~~d--------~~v~i~d~~~~~~~~~~~~~~~~~~~~~ 211 (341)
.+. +.... .......++++++|++.++.... |.|..++.. ++........
T Consensus 71 --------~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~-------- 133 (246)
T PF08450_consen 71 --------KVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGL-------- 133 (246)
T ss_dssp --------EEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEE--------
T ss_pred --------cEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCc--------
Confidence 222 22221 23457789999999977765443 567777776 4433322221
Q ss_pred CCeeeeEEEEEecCCCCEEE-EEeCCCeEEEEEcCCCCc---eeEEE-EecCC--CeEEEEEcCCCceEEEEeCCCCEEE
Q 019405 212 TPTWFTSAAFLSIDDHRKFV-AGTNDHQVRLYDTSAQRR---PVMSF-DFRET--PIKAVAEEPDSFNIYIGNGSGDLAS 284 (341)
Q Consensus 212 ~~~~v~~~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~---~~~~~-~~~~~--~v~~~~~~~~~~~l~~g~~dg~i~i 284 (341)
...+.++| +|+++.|+ +-+..+.|..+++..... ....+ ..... ..-.+++..+|++.++....+.|.+
T Consensus 134 --~~pNGi~~--s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~ 209 (246)
T PF08450_consen 134 --GFPNGIAF--SPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVV 209 (246)
T ss_dssp --SSEEEEEE--ETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEE
T ss_pred --ccccceEE--CCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEE
Confidence 23678999 88998765 566788899999864322 11222 22222 3678999999988888888999999
Q ss_pred EECCCCeEEeEEeccccCceeEEEec-CCCCEEEE
Q 019405 285 VDIRTGKLLGCFIGKCSGSIRSIARH-PTLPIIAS 318 (341)
Q Consensus 285 wd~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~s 318 (341)
+|.+ |+.+..+... ...+++++|. ++...|..
T Consensus 210 ~~p~-G~~~~~i~~p-~~~~t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 210 FDPD-GKLLREIELP-VPRPTNCAFGGPDGKTLYV 242 (246)
T ss_dssp EETT-SCEEEEEE-S-SSSEEEEEEESTTSSEEEE
T ss_pred ECCC-ccEEEEEcCC-CCCEEEEEEECCCCCEEEE
Confidence 9987 9988888876 5689999994 56554443
No 290
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.00 E-value=6.2e-07 Score=84.46 Aligned_cols=271 Identities=13% Similarity=0.087 Sum_probs=155.6
Q ss_pred eeeecCCCCeEEEEEecC-ccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccC
Q 019405 17 ALTFDSLGLIKVIEARGE-HGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAG 95 (341)
Q Consensus 17 ~~~~~~~g~i~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 95 (341)
++.+..+|.|-++..... ... .+...+.-+..+.+++||||.. +|+..+.+++|.+-.. +.+.+.+...+.
T Consensus 90 l~~~~~~Gdi~~~~~~~~~~~~---~~E~VG~vd~GI~a~~WSPD~E----lla~vT~~~~l~~mt~-~fd~i~E~~l~~ 161 (928)
T PF04762_consen 90 LCIALASGDIILVREDPDPDED---EIEIVGSVDSGILAASWSPDEE----LLALVTGEGNLLLMTR-DFDPISEVPLDS 161 (928)
T ss_pred EEEEECCceEEEEEccCCCCCc---eeEEEEEEcCcEEEEEECCCcC----EEEEEeCCCEEEEEec-cceEEEEeecCc
Confidence 455567777777743322 112 2333445677899999888887 8888998999988853 455555554432
Q ss_pred CCCCCCCCCceeeEeeeeccccccccccceeEEEccccee--EEEEeeecccccccCCceEEEEEeecCCceEEEEecCC
Q 019405 96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKA--SMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS 173 (341)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~--~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~ 173 (341)
.. ......+.+-|=..... +-|+..... ..-+... ...+.+.+. ++ ..-..++|-.|
T Consensus 162 ~~---~~~~~~VsVGWGkKeTQ---------F~Gs~gK~aa~~~~~p~~----~~~d~~~~s-~d----d~~~~ISWRGD 220 (928)
T PF04762_consen 162 DD---FGESKHVSVGWGKKETQ---------FHGSAGKAAARQLRDPTV----PKVDEGKLS-WD----DGRVRISWRGD 220 (928)
T ss_pred cc---cCCCceeeeccCcccCc---------cCcchhhhhhhhccCCCC----CccccCccc-cC----CCceEEEECCC
Confidence 11 11233333333222210 111100000 0000000 000111222 22 23457889999
Q ss_pred CCEEEEeeC---C---CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeC---CCeEEEEEc
Q 019405 174 EKFSLFGGK---G---VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN---DHQVRLYDT 244 (341)
Q Consensus 174 ~~~l~~~~~---d---~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---d~~i~iwd~ 244 (341)
|+++|+.+. . ..+++|+-+ |+.....+... +--.+++| .|.|+++|+.-. ...|.+|.-
T Consensus 221 G~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~---------gLe~~l~W--rPsG~lIA~~q~~~~~~~VvFfEr 288 (928)
T PF04762_consen 221 GEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVD---------GLEGALSW--RPSGNLIASSQRLPDRHDVVFFER 288 (928)
T ss_pred CcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCC---------CccCCccC--CCCCCEEEEEEEcCCCcEEEEEec
Confidence 999998764 2 468999864 55444333211 22456789 899999998764 356777775
Q ss_pred CCCCceeEEEE--ecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeE--EeEEeccccCceeEEEecCCCC-EEEEE
Q 019405 245 SAQRRPVMSFD--FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL--LGCFIGKCSGSIRSIARHPTLP-IIASC 319 (341)
Q Consensus 245 ~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~--~~~~~~~~~~~i~~~~~~~~~~-~l~s~ 319 (341)
+..+.--..+. .....|..+.|++++..||.-..|. |.+|-..+... .+.+.......+..+.|+|... .|...
T Consensus 289 NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~ 367 (928)
T PF04762_consen 289 NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVL 367 (928)
T ss_pred CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEE
Confidence 54322122222 2456799999999999999977554 99999887653 3344433234566699999765 56666
Q ss_pred eCCCcEEEEE
Q 019405 320 GLDSYLRFWD 329 (341)
Q Consensus 320 ~~dg~v~iwd 329 (341)
+.+|.+..++
T Consensus 368 t~~g~~~~~~ 377 (928)
T PF04762_consen 368 TSNGQYEIYD 377 (928)
T ss_pred ecCCcEEEEE
Confidence 6667665544
No 291
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.94 E-value=3.2e-07 Score=80.61 Aligned_cols=288 Identities=15% Similarity=0.125 Sum_probs=174.0
Q ss_pred eeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCC--------CceEEEEccCCeEEEeeCCCCcchh
Q 019405 18 LTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQN--------DPLLAVARKNGLTDILNPLNGDLRV 89 (341)
Q Consensus 18 ~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~--------~~~l~~~~~dg~i~iw~~~~~~~~~ 89 (341)
++.+.-..|-+++...- +.++.+..|+..|+.+.|++...|. ..+||++...|.|.+||...+..+.
T Consensus 29 iAygshslV~VVDs~s~-----q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~ 103 (1062)
T KOG1912|consen 29 IAYGSHSLVSVVDSRSL-----QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVIN 103 (1062)
T ss_pred EEEecCceEEEEehhhh-----hhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhh
Confidence 34444444466666555 5677787899999999999865443 2368889999999999998887777
Q ss_pred eeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecC-CceEEE
Q 019405 90 AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCAS-GTIAFS 168 (341)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~-~~i~~~ 168 (341)
.++. +.+++..++|...... ....|++-.....+.+|+...+. ++|...-. ....|+
T Consensus 104 ~l~~--------~~~~~qdl~W~~~rd~----Srd~LlaIh~ss~lvLwntdtG~----------k~Wk~~ys~~iLs~f 161 (1062)
T KOG1912|consen 104 WLSH--------SNDSVQDLCWVPARDD----SRDVLLAIHGSSTLVLWNTDTGE----------KFWKYDYSHEILSCF 161 (1062)
T ss_pred hhcC--------CCcchhheeeeeccCc----chheeEEecCCcEEEEEEccCCc----------eeeccccCCcceeee
Confidence 6665 4577777888765542 11267777888899999865443 56664433 345568
Q ss_pred EecC-CCCEEEEeeCCCeEEEEECCC-------CceeeecCCCCC-----------Cc-----cCccCCeeeeEEEEEec
Q 019405 169 KVDI-SEKFSLFGGKGVEVNVWDLDK-------CEKIWTAKPPPK-----------NS-----LGIFTPTWFTSAAFLSI 224 (341)
Q Consensus 169 ~~~~-~~~~l~~~~~d~~v~i~d~~~-------~~~~~~~~~~~~-----------~~-----~~~~~~~~v~~~~~~~~ 224 (341)
.++| |.+.+..-+..|.+.+-+.-. ++..+.-..+.. .. .....+......+| +
T Consensus 162 ~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf--~ 239 (1062)
T KOG1912|consen 162 RVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAF--S 239 (1062)
T ss_pred eeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhc--C
Confidence 8888 556666666667776665421 121111111100 00 00000111223445 5
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCC--ceEEEEeCCCCEEEEECCC-------------
Q 019405 225 DDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS--FNIYIGNGSGDLASVDIRT------------- 289 (341)
Q Consensus 225 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~g~~dg~i~iwd~~~------------- 289 (341)
|.-+.++.....+.+.++|++-. +++....-..+.+..+.+-|++ ..|++.-.||.+.+|-.+.
T Consensus 240 p~~rn~lfi~~prellv~dle~~-~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~ 318 (1062)
T KOG1912|consen 240 PHWRNILFITFPRELLVFDLEYE-CCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLS 318 (1062)
T ss_pred hhhhceEEEEeccceEEEcchhh-ceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhc
Confidence 55554555556788999999864 3466666566667778887765 5789999999999996543
Q ss_pred ---CeEEeEEeccccCceeEEEecCC-CCEEEEEeCCCcEEEEEcCCCce
Q 019405 290 ---GKLLGCFIGKCSGSIRSIARHPT-LPIIASCGLDSYLRFWDIKTRQL 335 (341)
Q Consensus 290 ---~~~~~~~~~~~~~~i~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~ 335 (341)
++....+..-.+-.+...+..|. ...++.--.+|.+.+|.+.+|+.
T Consensus 319 ~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri 368 (1062)
T KOG1912|consen 319 MDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRI 368 (1062)
T ss_pred cccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCc
Confidence 11122221111222333444454 23344344677888999887653
No 292
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=1.9e-06 Score=73.01 Aligned_cols=239 Identities=10% Similarity=0.045 Sum_probs=146.9
Q ss_pred CCceeEEEeccCCCCCceEEEEcc-----------CCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccc
Q 019405 50 SSNCVLAASIDDSQNDPLLAVARK-----------NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREE 118 (341)
Q Consensus 50 ~~~~~~~~s~~~~~~~~~l~~~~~-----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (341)
..+..+.|||... ||+|=+. ...++|||+.+|...+.+.... .....--+-.|+.++
T Consensus 250 p~Vq~idfSP~Ek----YLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~------~~~~~WP~frWS~Dd-- 317 (698)
T KOG2314|consen 250 PGVQFIDFSPNEK----YLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIK------SPYLKWPIFRWSHDD-- 317 (698)
T ss_pred CCceeeecCCccc----eEEEecCCccccCcccCCCceEEEEEccccchhcceeccC------CCccccceEEeccCC--
Confidence 4566777777666 8888442 2569999999999988877631 112233344455555
Q ss_pred cccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeec--CCceEEEEecCCCCEEEEeeC-----CCeEEEEEC
Q 019405 119 SSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA--SGTIAFSKVDISEKFSLFGGK-----GVEVNVWDL 191 (341)
Q Consensus 119 ~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~--~~~i~~~~~~~~~~~l~~~~~-----d~~v~i~d~ 191 (341)
.+++.-....+.|+.... ..+.+... -..|....|+|.++.||.=.. -..+.+..+
T Consensus 318 ------Ky~Arm~~~sisIyEtps-----------f~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~ev 380 (698)
T KOG2314|consen 318 ------KYFARMTGNSISIYETPS-----------FMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEV 380 (698)
T ss_pred ------ceeEEeccceEEEEecCc-----------eeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEec
Confidence 555555557777776432 22222211 245778899999888875322 123555556
Q ss_pred CCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEe----------CCCeEEEEEcCCCCceeEEEEecCCCe
Q 019405 192 DKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT----------NDHQVRLYDTSAQRRPVMSFDFRETPI 261 (341)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~v 261 (341)
.+++.++...... |..+..+-..+|.+|+.-- .--.+.|+.++....|+..... ...|
T Consensus 381 Ps~~~iRt~nlfn-----------VsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~vel-ke~v 448 (698)
T KOG2314|consen 381 PSKREIRTKNLFN-----------VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVEL-KESV 448 (698)
T ss_pred Cccceeeecccee-----------eeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeec-chhe
Confidence 5555554433221 3222222256677766521 1124667777766666666553 3578
Q ss_pred EEEEEcCCCceEEEEeC---CCCEEEEECCC-C---eEEeEEeccccCceeEEEecCCCCEEEEE---eCCCcEEEEEcC
Q 019405 262 KAVAEEPDSFNIYIGNG---SGDLASVDIRT-G---KLLGCFIGKCSGSIRSIARHPTLPIIASC---GLDSYLRFWDIK 331 (341)
Q Consensus 262 ~~~~~~~~~~~l~~g~~---dg~i~iwd~~~-~---~~~~~~~~~~~~~i~~~~~~~~~~~l~s~---~~dg~v~iwd~~ 331 (341)
...+|.|.|..+++-+. ..++.+|.+++ . +++..+. ....+.+.|+|.|++++.+ |..|.+.++|+.
T Consensus 449 i~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d---k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~ 525 (698)
T KOG2314|consen 449 IAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD---KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTD 525 (698)
T ss_pred eeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc---ccccceEEEcCCCcEEEEEEecccccceEEEecc
Confidence 89999999977765443 35688888773 2 3344443 3467889999999987765 457889999987
Q ss_pred C
Q 019405 332 T 332 (341)
Q Consensus 332 ~ 332 (341)
-
T Consensus 526 ~ 526 (698)
T KOG2314|consen 526 Y 526 (698)
T ss_pred h
Confidence 3
No 293
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.91 E-value=6.5e-09 Score=82.42 Aligned_cols=143 Identities=17% Similarity=0.132 Sum_probs=104.9
Q ss_pred CCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEE
Q 019405 162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL 241 (341)
Q Consensus 162 ~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~i 241 (341)
...|.++.|...++++..|..+|.|..+|++.+. .+.......+.|+..|+++... ..++.+|++.+.+|+|++
T Consensus 252 ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rn-----qG~~~~a~rlyh~Ssvtslq~L-q~s~q~LmaS~M~gkikL 325 (425)
T KOG2695|consen 252 KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRN-----QGNGWCAQRLYHDSSVTSLQIL-QFSQQKLMASDMTGKIKL 325 (425)
T ss_pred chhHHHHHhcccCCeeEecccCCcEEEEEeeecc-----cCCCcceEEEEcCcchhhhhhh-ccccceEeeccCcCceeE
Confidence 4678888998889999999999999999998652 1112222234466778888764 447788999999999999
Q ss_pred EEcCCCCc--eeEEEEecCCCeEEE--EEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccc---cCceeEEEec
Q 019405 242 YDTSAQRR--PVMSFDFRETPIKAV--AEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC---SGSIRSIARH 310 (341)
Q Consensus 242 wd~~~~~~--~~~~~~~~~~~v~~~--~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~---~~~i~~~~~~ 310 (341)
||++.-++ -+.++.+|-..-.-+ -..+....+++++.|...+||.++.+.++.+++... +..+.+++|.
T Consensus 326 yD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 326 YDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred eeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence 99986442 377788885543333 335666788899999999999999999998887541 2245566664
No 294
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.91 E-value=1.2e-06 Score=70.16 Aligned_cols=192 Identities=18% Similarity=0.217 Sum_probs=114.4
Q ss_pred eEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccc
Q 019405 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS 146 (341)
Q Consensus 67 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~ 146 (341)
++++++.++.|..||..+|+.+..+.... .+.... ....+ .++.+..++.+..++...++
T Consensus 38 ~v~~~~~~~~l~~~d~~tG~~~W~~~~~~---------~~~~~~-~~~~~--------~v~v~~~~~~l~~~d~~tG~-- 97 (238)
T PF13360_consen 38 RVYVASGDGNLYALDAKTGKVLWRFDLPG---------PISGAP-VVDGG--------RVYVGTSDGSLYALDAKTGK-- 97 (238)
T ss_dssp EEEEEETTSEEEEEETTTSEEEEEEECSS---------CGGSGE-EEETT--------EEEEEETTSEEEEEETTTSC--
T ss_pred EEEEEcCCCEEEEEECCCCCEEEEeeccc---------ccccee-eeccc--------ccccccceeeeEecccCCcc--
Confidence 58888899999999999999887776521 111111 11122 66666677777777754333
Q ss_pred cccCCceEEEEEe-ecC----CceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccC-ccC-CeeeeEE
Q 019405 147 AESSCSTVKSWNV-CAS----GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLG-IFT-PTWFTSA 219 (341)
Q Consensus 147 ~~~~~~~v~~~~~-~~~----~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~-~~~-~~~v~~~ 219 (341)
.+|.. ... ..........+++.++.+..++.|..+|+++|+.++........... ... ......+
T Consensus 98 --------~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~ 169 (238)
T PF13360_consen 98 --------VLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSP 169 (238)
T ss_dssp --------EEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEE
T ss_pred --------eeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccce
Confidence 24552 211 11112222224778888888999999999999998887663321000 000 0001222
Q ss_pred EEEecCCCCEEEEEeCCCe-EEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeE
Q 019405 220 AFLSIDDHRKFVAGTNDHQ-VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGC 295 (341)
Q Consensus 220 ~~~~~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~ 295 (341)
.+ .++ .+..+..++. +.+ |+.+++. +-.. ....+..+ ..+.+..|++++.++.|..||+++|+.+..
T Consensus 170 ~~---~~~-~v~~~~~~g~~~~~-d~~tg~~-~w~~--~~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 170 VI---SDG-RVYVSSGDGRVVAV-DLATGEK-LWSK--PISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EC---CTT-EEEEECCTSSEEEE-ETTTTEE-EEEE--CSS-ECEC-EECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred EE---ECC-EEEEEcCCCeEEEE-ECCCCCE-EEEe--cCCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 22 234 6777777775 555 9998764 3222 22223331 345667888888999999999999998753
No 295
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.90 E-value=9.3e-08 Score=83.20 Aligned_cols=237 Identities=13% Similarity=0.093 Sum_probs=152.1
Q ss_pred CceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCC-------CCCCCCCceeeEeeeecccccccccc
Q 019405 51 SNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDS-------GAQPEDDGIVGLHLFKRQREESSSRS 123 (341)
Q Consensus 51 ~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (341)
...|++|..... +++.|+.||.++|..+.+...-...++.... ...+|...+..+.|.....
T Consensus 16 kL~c~~WNke~g----yIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q------- 84 (1189)
T KOG2041|consen 16 KLHCAEWNKESG----YIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ------- 84 (1189)
T ss_pred eEEEEEEcccCC----eEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc-------
Confidence 345666665555 8999999999999988754332222221100 1123556666666655555
Q ss_pred ceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeee--cC
Q 019405 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT--AK 201 (341)
Q Consensus 124 ~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~--~~ 201 (341)
.|.+...+|.|.+|-+-.+.-. -...+......|.+++|+.+|..++....||.|.+=.++. ..++. ++
T Consensus 85 -KLTtSDt~GlIiVWmlykgsW~-------EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdG-NRIwgKeLk 155 (1189)
T KOG2041|consen 85 -KLTTSDTSGLIIVWMLYKGSWC-------EEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDG-NRIWGKELK 155 (1189)
T ss_pred -cccccCCCceEEEEeeecccHH-------HHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecc-ceecchhcc
Confidence 7888888899999876433210 0011223456788999999999999999999998877653 33321 22
Q ss_pred CCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCC------ceeEEEEe----cCCCeEEEEEc----
Q 019405 202 PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR------RPVMSFDF----RETPIKAVAEE---- 267 (341)
Q Consensus 202 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~------~~~~~~~~----~~~~v~~~~~~---- 267 (341)
+. ....+.| ++|...++.+-.+|.+.+||.+..- .......+ ....|..+.|.
T Consensus 156 g~-----------~l~hv~w--s~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~ 222 (1189)
T KOG2041|consen 156 GQ-----------LLAHVLW--SEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPY 222 (1189)
T ss_pred hh-----------eccceee--cccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCcc
Confidence 21 1345678 8899998888899999999976421 00111111 11235556653
Q ss_pred ----CCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCC
Q 019405 268 ----PDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLD 322 (341)
Q Consensus 268 ----~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d 322 (341)
|+...|+++...|.+.|-.-.+......+.. .-.|..+.|+++|.+|+.++.|
T Consensus 223 ~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dt--gm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 223 QPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDT--GMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred ccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEec--ccEeecceecCCCcEEEEccCc
Confidence 5778899999999988875544433333332 3578899999999999998855
No 296
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.90 E-value=8.6e-06 Score=78.37 Aligned_cols=224 Identities=13% Similarity=0.077 Sum_probs=125.0
Q ss_pred eeEEEeccCCCCCceEEEE-ccCCeEEEeeCCCCcchheeeccCCCC--CCCC-------CCceeeEeeeeccccccccc
Q 019405 53 CVLAASIDDSQNDPLLAVA-RKNGLTDILNPLNGDLRVAISNAGDSG--AQPE-------DDGIVGLHLFKRQREESSSR 122 (341)
Q Consensus 53 ~~~~~s~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~--~~~~-------~~~~~~~~~~~~~~~~~~~~ 122 (341)
..+++..++. .|+++ ..++.|+++|+.++. +.++....... .... ......+++-+..+.
T Consensus 627 ~GIavd~~gn----~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~----- 696 (1057)
T PLN02919 627 QGLAYNAKKN----LLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEK----- 696 (1057)
T ss_pred cEEEEeCCCC----EEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCe-----
Confidence 3445554433 45554 456789999987654 33332210000 0000 012234444332331
Q ss_pred cceeEEEcccceeEEEEeeecccccccCCceEEEEE-----eecCCceEEEEecCCCCEE-EEeeCCCeEEEEECCCCce
Q 019405 123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN-----VCASGTIAFSKVDISEKFS-LFGGKGVEVNVWDLDKCEK 196 (341)
Q Consensus 123 ~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~-----~~~~~~i~~~~~~~~~~~l-~~~~~d~~v~i~d~~~~~~ 196 (341)
.+++...++.+.+|+...........++.....+ ...-.....++++|+++.| ++-+.++.|++||+.++..
T Consensus 697 --LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~ 774 (1057)
T PLN02919 697 --VYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGS 774 (1057)
T ss_pred --EEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcE
Confidence 6677777889999887433211100111000000 0001234578999998844 4556678999999987653
Q ss_pred eeecCCCC---CCccCc---------cCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEec-------
Q 019405 197 IWTAKPPP---KNSLGI---------FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR------- 257 (341)
Q Consensus 197 ~~~~~~~~---~~~~~~---------~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~------- 257 (341)
........ ...... ..-.....+++ +++++++++-..++.|++||..++. +..+.+.
T Consensus 775 ~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvav--d~dG~LYVADs~N~rIrviD~~tg~--v~tiaG~G~~G~~d 850 (1057)
T PLN02919 775 RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLC--AKDGQIYVADSYNHKIKKLDPATKR--VTTLAGTGKAGFKD 850 (1057)
T ss_pred EEEEecccccCcccccccCCCCchhhhhccCCceeeE--eCCCcEEEEECCCCEEEEEECCCCe--EEEEeccCCcCCCC
Confidence 22111000 000000 00012357788 7889988888899999999998754 3333221
Q ss_pred -------CCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeE
Q 019405 258 -------ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL 292 (341)
Q Consensus 258 -------~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~ 292 (341)
-.....++++++|+++++-+.++.|++||+.+++.
T Consensus 851 G~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 851 GKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 12467899999999888888899999999988764
No 297
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=2.9e-08 Score=81.57 Aligned_cols=281 Identities=12% Similarity=0.040 Sum_probs=170.4
Q ss_pred eeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEcc-CCeEEEeeCCCCcchheeecc
Q 019405 16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARK-NGLTDILNPLNGDLRVAISNA 94 (341)
Q Consensus 16 ~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~ 94 (341)
-.++++-||.+|.|.-... .|+ +.+..+..|...+..++.+.++- ++++.+. |..++++|+++-.....++..
T Consensus 22 fiiqASlDGh~KFWkKs~i-sGv-EfVKhFraHL~~I~sl~~S~dg~----L~~Sv~d~Dhs~KvfDvEn~DminmiKL~ 95 (558)
T KOG0882|consen 22 FIIQASLDGHKKFWKKSRI-SGV-EFVKHFRAHLGVILSLAVSYDGW----LFRSVEDPDHSVKVFDVENFDMINMIKLV 95 (558)
T ss_pred eEEeeecchhhhhcCCCCc-cce-eehhhhHHHHHHHHhhhccccce----eEeeccCcccceeEEEeeccchhhhcccc
Confidence 3678899999999986663 132 34556667778887777777766 7888676 999999999887665554432
Q ss_pred CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC
Q 019405 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (341)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~ 174 (341)
..+ + ...|....+.. ....-+....++.+.++|-.. ...++..+.--|..+|.++.+.+.+
T Consensus 96 ~lP------g---~a~wv~skGd~---~s~IAVs~~~sg~i~VvD~~~-------d~~q~~~fkklH~sPV~~i~y~qa~ 156 (558)
T KOG0882|consen 96 DLP------G---FAEWVTSKGDK---ISLIAVSLFKSGKIFVVDGFG-------DFCQDGYFKKLHFSPVKKIRYNQAG 156 (558)
T ss_pred cCC------C---ceEEecCCCCe---eeeEEeecccCCCcEEECCcC-------CcCccceecccccCceEEEEeeccc
Confidence 111 1 11222111100 000223334457777776321 1124555666677899999999999
Q ss_pred CEEEEeeCCCeEEEEECCC------CceeeecCCCCCCccCc-cCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCC
Q 019405 175 KFSLFGGKGVEVNVWDLDK------CEKIWTAKPPPKNSLGI-FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ 247 (341)
Q Consensus 175 ~~l~~~~~d~~v~i~d~~~------~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 247 (341)
..+++....|.|.-|..+. .+..+.++.. ...+.. .......++.| +|++..+.+-+.|..|++++.+++
T Consensus 157 Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~e-TdLy~f~K~Kt~pts~Ef--sp~g~qistl~~DrkVR~F~~KtG 233 (558)
T KOG0882|consen 157 DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHE-TDLYGFPKAKTEPTSFEF--SPDGAQISTLNPDRKVRGFVFKTG 233 (558)
T ss_pred cceeeccccceeEeecCCCcccCcccccccccccc-chhhcccccccCccceEE--ccccCcccccCcccEEEEEEeccc
Confidence 9999999999999999873 1111222111 111111 11244678889 899999999999999999999987
Q ss_pred CceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCe---EEeEEeccccCceeEEEecCCCCEEEEEeCCCc
Q 019405 248 RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK---LLGCFIGKCSGSIRSIARHPTLPIIASCGLDSY 324 (341)
Q Consensus 248 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~ 324 (341)
+. ++.+..-. +.-.+-|.. .+.+=++.-++ ..+.+..|....-+.+.|...+++|+-++.=|
T Consensus 234 kl-vqeiDE~~---t~~~~q~ks----------~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g- 298 (558)
T KOG0882|consen 234 KL-VQEIDEVL---TDAQYQPKS----------PYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG- 298 (558)
T ss_pred hh-hhhhhccc---hhhhhcccc----------ccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-
Confidence 64 55443211 111111111 11111111111 11223333234556788999999999887665
Q ss_pred EEEEEcCCCceeeee
Q 019405 325 LRFWDIKTRQLLSAV 339 (341)
Q Consensus 325 v~iwd~~~~~~~~~~ 339 (341)
|++.++.++.+++.+
T Consensus 299 ikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 299 IKVINLDTNTVVRIL 313 (558)
T ss_pred EEEEEeecCeEEEEe
Confidence 899999998877654
No 298
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.87 E-value=2.9e-07 Score=72.35 Aligned_cols=121 Identities=12% Similarity=0.164 Sum_probs=81.6
Q ss_pred ceEEEEecCCC-CEEEEeeCCCeEEEEECCCCce------eeecCCCCCC-ccCccCCeeeeEEEEEecCCCCEEEEEeC
Q 019405 164 TIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEK------IWTAKPPPKN-SLGIFTPTWFTSAAFLSIDDHRKFVAGTN 235 (341)
Q Consensus 164 ~i~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~------~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 235 (341)
.|++..|+|.. +.+...+..|.|++-|+++... +......... .+-......|..+.| +++|+++++-..
T Consensus 223 VItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kF--s~ngryIlsRdy 300 (460)
T COG5170 223 VITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKF--SDNGRYILSRDY 300 (460)
T ss_pred HHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEE--cCCCcEEEEecc
Confidence 36777888854 5666677889999999985322 1111111100 000111245788889 889999888654
Q ss_pred CCeEEEEEcCCCCceeEEEEecC------------CCeE---EEEEcCCCceEEEEeCCCCEEEEEC
Q 019405 236 DHQVRLYDTSAQRRPVMSFDFRE------------TPIK---AVAEEPDSFNIYIGNGSGDLASVDI 287 (341)
Q Consensus 236 d~~i~iwd~~~~~~~~~~~~~~~------------~~v~---~~~~~~~~~~l~~g~~dg~i~iwd~ 287 (341)
-+|++||.+..+.|+.++.-|. ..|. .+.|+.+.+.+++|+..+..-++-.
T Consensus 301 -ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 301 -LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred -ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence 5899999998888888876552 2333 4788888899999998888777753
No 299
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.85 E-value=1.2e-05 Score=71.33 Aligned_cols=163 Identities=17% Similarity=0.172 Sum_probs=97.7
Q ss_pred EEecCCCCEEEEeeCCC------------------eEEEEECCCCceeeecCCCCCCccC--ccCCeeeeEEEEEecCCC
Q 019405 168 SKVDISEKFSLFGGKGV------------------EVNVWDLDKCEKIWTAKPPPKNSLG--IFTPTWFTSAAFLSIDDH 227 (341)
Q Consensus 168 ~~~~~~~~~l~~~~~d~------------------~v~i~d~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~ 227 (341)
.++++.+..++.++.++ .|.-+|.++++..+.++........ ...+..+..+. .-++
T Consensus 222 pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~---~~~g 298 (488)
T cd00216 222 PTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIK---PKDG 298 (488)
T ss_pred eeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecc---ccCC
Confidence 34455566777776554 7999999999999987643221110 00000011111 0123
Q ss_pred C---EEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEE------------------eCCCCEEEEE
Q 019405 228 R---KFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIG------------------NGSGDLASVD 286 (341)
Q Consensus 228 ~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g------------------~~dg~i~iwd 286 (341)
. .++.++.+|.+..+|.++++. +-..... ...++.+| ..++.+ ..+|.+.-.|
T Consensus 299 ~~~~~V~~g~~~G~l~ald~~tG~~-~W~~~~~---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD 372 (488)
T cd00216 299 KPVPAIVHAPKNGFFYVLDRTTGKL-ISARPEV---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALD 372 (488)
T ss_pred CeeEEEEEECCCceEEEEECCCCcE-eeEeEee---ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEe
Confidence 2 577888999999999999875 4333211 11233444 233332 2467899999
Q ss_pred CCCCeEEeEEeccc-c------CceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 287 IRTGKLLGCFIGKC-S------GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 287 ~~~~~~~~~~~~~~-~------~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
+.+|+.+.+..... . .+...-...-.+..|+.++.||.|+.+|.++|+.+.+.
T Consensus 373 ~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~ 432 (488)
T cd00216 373 PKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKF 432 (488)
T ss_pred CCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEE
Confidence 99999887665320 0 11111011124567888889999999999999988764
No 300
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=2.7e-08 Score=81.73 Aligned_cols=198 Identities=14% Similarity=0.048 Sum_probs=137.4
Q ss_pred eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeC-CCeEEEEECCCCceeeecCCC
Q 019405 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK-GVEVNVWDLDKCEKIWTAKPP 203 (341)
Q Consensus 125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~v~i~d~~~~~~~~~~~~~ 203 (341)
.+++++.||.++.|.-.... .. .+......|-..|.+++.+-++.++.+.+. |..++++|+++-.....++..
T Consensus 22 fiiqASlDGh~KFWkKs~is-----Gv-EfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~ 95 (558)
T KOG0882|consen 22 FIIQASLDGHKKFWKKSRIS-----GV-EFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLV 95 (558)
T ss_pred eEEeeecchhhhhcCCCCcc-----ce-eehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccc
Confidence 89999999999999743211 01 112222335567888888899999999777 999999999875544333222
Q ss_pred CCCccCccCCeeeeEEEEEecCCC--CEEEE-EeCCCeEEEEEcCCCCceeE-EEEecCCCeEEEEEcCCCceEEEEeCC
Q 019405 204 PKNSLGIFTPTWFTSAAFLSIDDH--RKFVA-GTNDHQVRLYDTSAQRRPVM-SFDFRETPIKAVAEEPDSFNIYIGNGS 279 (341)
Q Consensus 204 ~~~~~~~~~~~~v~~~~~~~~~~~--~~l~~-~~~d~~i~iwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~g~~d 279 (341)
-. |. .+.|..++.. ..+++ .-.++.+.++|-....++.. .-..|..+|..+.+++-+..+++....
T Consensus 96 ~l-------Pg---~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~ 165 (558)
T KOG0882|consen 96 DL-------PG---FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDIS 165 (558)
T ss_pred cC-------CC---ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecccc
Confidence 10 11 1222212221 13333 44678999999876554333 334589999999999999999999999
Q ss_pred CCEEEEECCC------CeE---------EeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 280 GDLASVDIRT------GKL---------LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 280 g~i~iwd~~~------~~~---------~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
|.|.-|.... .+. +..+... .....++.|+|++..+.+-+.|..|++++.++|+.++.+
T Consensus 166 gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~-Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 166 GMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKA-KTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred ceeEeecCCCcccCccccccccccccchhhccccc-ccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence 9999998762 111 1122222 567889999999999999999999999999999987754
No 301
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.84 E-value=1.6e-07 Score=83.87 Aligned_cols=188 Identities=18% Similarity=0.190 Sum_probs=126.0
Q ss_pred eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCC
Q 019405 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP 204 (341)
Q Consensus 125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~ 204 (341)
.++.|+....+..+|++... ..+..++..++ +.-+. .+++.+.+|...|+|.+-|.++.+.+.++..|.
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~--------e~r~~~v~a~~-v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs 217 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEK--------ETRTTNVSASG-VTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHS 217 (1118)
T ss_pred ceeecchhhheeeeecccce--------eeeeeeccCCc-eEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccc
Confidence 44555444455555554332 33344443322 44444 357889999999999999999999999999876
Q ss_pred CCccCccCCeeeeEEEEEecCCCCEEEEEeC---------CCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCC-ceEE
Q 019405 205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN---------DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS-FNIY 274 (341)
Q Consensus 205 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~ 274 (341)
+.+..+.. .|++|++++. |.-|++||++..+. +.-+..+.++ .-+.|+|.- ..++
T Consensus 218 ---------~siSDfDv----~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra-l~PI~~~~~P-~flrf~Psl~t~~~ 282 (1118)
T KOG1275|consen 218 ---------GSISDFDV----QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA-LSPIQFPYGP-QFLRFHPSLTTRLA 282 (1118)
T ss_pred ---------cceeeeec----cCCeEEEeecccccccccccchhhhhhhhhhhc-cCCcccccCc-hhhhhcccccceEE
Confidence 44665554 7889998875 45589999998654 4334434433 457788853 5788
Q ss_pred EEeCCCCEEEEECCCC-eE-EeEEe-ccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 275 IGNGSGDLASVDIRTG-KL-LGCFI-GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 275 ~g~~dg~i~iwd~~~~-~~-~~~~~-~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
+.+..|...+-|..+. .+ ...+. ......+..+++++++..++.+..+|.|.+|. .+.++...-
T Consensus 283 V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa-~~~~P~Fn~ 349 (1118)
T KOG1275|consen 283 VTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA-DRPQPQFNE 349 (1118)
T ss_pred EEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec-CCCCCccCC
Confidence 8899999999984321 11 11121 12244599999999999999999999999998 334444433
No 302
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.84 E-value=7e-06 Score=71.07 Aligned_cols=255 Identities=13% Similarity=0.109 Sum_probs=135.3
Q ss_pred ceEEEEccCCeEEEeeCCCCcchheeeccCCCCC-CCC-CCceeeEeeeeccccccccccceeEEEcccceeEEEEeeec
Q 019405 66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGA-QPE-DDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT 143 (341)
Q Consensus 66 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~ 143 (341)
..+++++.+|.|.-+|.++|+.+........... +.. ...+.+-... .++ .++.++.+|.+..+|.+.+
T Consensus 70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v-~~~--------~v~v~~~~g~l~ald~~tG 140 (394)
T PRK11138 70 NKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV-AGG--------KVYIGSEKGQVYALNAEDG 140 (394)
T ss_pred CEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE-ECC--------EEEEEcCCCEEEEEECCCC
Confidence 3688888899999999999988776654211000 000 0000000000 011 4555556666666655433
Q ss_pred ccc---------------------cccCCceEEEEEeecCCceEEEEe-----------cC--CCCEEEEeeCCCeEEEE
Q 019405 144 KVS---------------------AESSCSTVKSWNVCASGTIAFSKV-----------DI--SEKFSLFGGKGVEVNVW 189 (341)
Q Consensus 144 ~~~---------------------~~~~~~~v~~~~~~~~~~i~~~~~-----------~~--~~~~l~~~~~d~~v~i~ 189 (341)
+.. ....++.+..++..++..++.... +| .+..++.++.++.+..+
T Consensus 141 ~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~ 220 (394)
T PRK11138 141 EVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAV 220 (394)
T ss_pred CCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEE
Confidence 220 011233344444433333332221 11 12345556667777778
Q ss_pred ECCCCceeeecCCCCCCc-cCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcC
Q 019405 190 DLDKCEKIWTAKPPPKNS-LGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEP 268 (341)
Q Consensus 190 d~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 268 (341)
|..+++.++......... ... .....+...|--.+..++.++.++.+..+|..+++. +-.... .....+..
T Consensus 221 d~~~G~~~W~~~~~~~~~~~~~---~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~-~W~~~~--~~~~~~~~-- 292 (394)
T PRK11138 221 LMEQGQLIWQQRISQPTGATEI---DRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQI-VWKREY--GSVNDFAV-- 292 (394)
T ss_pred EccCChhhheeccccCCCccch---hcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCE-EEeecC--CCccCcEE--
Confidence 887777766543221100 000 000000010001245677777899999999998764 322221 11112222
Q ss_pred CCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 269 DSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 269 ~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
.+..++.++.+|.+..+|..+|+.+............+... .+..|+.++.||.|+..|..+|+.+.+.
T Consensus 293 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~ 361 (394)
T PRK11138 293 DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQ 361 (394)
T ss_pred ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEE
Confidence 45578888899999999999998765443210111222222 2457788899999999999999987654
No 303
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.83 E-value=1.7e-08 Score=55.49 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=35.3
Q ss_pred eeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEE
Q 019405 250 PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVD 286 (341)
Q Consensus 250 ~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd 286 (341)
++..+.+|..+|++++|+|++.+|++++.|+.|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4788999999999999999999999999999999997
No 304
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.83 E-value=3.1e-09 Score=94.22 Aligned_cols=221 Identities=17% Similarity=0.157 Sum_probs=141.8
Q ss_pred eccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccccccc
Q 019405 44 RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS 123 (341)
Q Consensus 44 ~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (341)
.|.++...-+|++|+.+.. +|++|+..|.|+++++.+|.....+.+|. .+++.+.-.....
T Consensus 1096 ~frd~~~~fTc~afs~~~~----hL~vG~~~Geik~~nv~sG~~e~s~ncH~--------SavT~vePs~dgs------- 1156 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTN----HLAVGSHAGEIKIFNVSSGSMEESVNCHQ--------SAVTLVEPSVDGS------- 1156 (1516)
T ss_pred hhhccccceeeEEeecCCc----eEEeeeccceEEEEEccCccccccccccc--------cccccccccCCcc-------
Confidence 4567888899999998887 89999999999999999999888888753 3343332222111
Q ss_pred ceeEEEcccc-eeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCC
Q 019405 124 RTLLTCTTKG-KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKP 202 (341)
Q Consensus 124 ~~l~~~~~~g-~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~ 202 (341)
-.|.+++... ...+|++.. .-+..+.|+ .-.++.|+.....-+.|.......+||+.++..+.++-.
T Consensus 1157 ~~Ltsss~S~PlsaLW~~~s-------~~~~~Hsf~-----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt 1224 (1516)
T KOG1832|consen 1157 TQLTSSSSSSPLSALWDASS-------TGGPRHSFD-----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLT 1224 (1516)
T ss_pred eeeeeccccCchHHHhcccc-------ccCcccccc-----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcC
Confidence 0233333222 445666532 112333333 234677876655555566656799999999887766433
Q ss_pred CCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCE
Q 019405 203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDL 282 (341)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i 282 (341)
..... ...-++..| +|+..+++ .|| .+||++..+ .++.|...+.. -.-.|+|.|..++.-+.
T Consensus 1225 ~~~~~-----~y~~n~a~F--sP~D~LIl---ndG--vLWDvR~~~-aIh~FD~ft~~-~~G~FHP~g~eVIINSE---- 1286 (1516)
T KOG1832|consen 1225 DTVTS-----SYSNNLAHF--SPCDTLIL---NDG--VLWDVRIPE-AIHRFDQFTDY-GGGGFHPSGNEVIINSE---- 1286 (1516)
T ss_pred cchhh-----hhhcccccc--CCCcceEe---eCc--eeeeeccHH-HHhhhhhheec-ccccccCCCceEEeech----
Confidence 22110 011256678 88887765 466 579999864 36666543322 23469999988887653
Q ss_pred EEEECCCCeEEeEEeccccCceeEEEecCCCCEEE
Q 019405 283 ASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIA 317 (341)
Q Consensus 283 ~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 317 (341)
|||+++.++++..+.- .-..+.|+..|..+.
T Consensus 1287 -IwD~RTF~lLh~VP~L---dqc~VtFNstG~VmY 1317 (1516)
T KOG1832|consen 1287 -IWDMRTFKLLHSVPSL---DQCAVTFNSTGDVMY 1317 (1516)
T ss_pred -hhhhHHHHHHhcCccc---cceEEEeccCccchh
Confidence 9999999988777643 234677887777544
No 305
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.81 E-value=1.9e-05 Score=67.91 Aligned_cols=71 Identities=27% Similarity=0.348 Sum_probs=60.0
Q ss_pred CeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECC
Q 019405 213 PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR 288 (341)
Q Consensus 213 ~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~ 288 (341)
+..+.++++ +|+...++.|+.||.|.+||...+ +..+....-..+.++|+|+|..+++|+..|.+.+||+.
T Consensus 259 ~s~v~~ca~--sp~E~kLvlGC~DgSiiLyD~~~~---~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 259 PSQVICCAR--SPSEDKLVLGCEDGSIILYDTTRG---VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred CCcceEEec--CcccceEEEEecCCeEEEEEcCCC---eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 356889999 899999999999999999998764 33333344567889999999999999999999999975
No 306
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.80 E-value=7.5e-06 Score=68.79 Aligned_cols=244 Identities=13% Similarity=0.051 Sum_probs=142.7
Q ss_pred CCceeEEEeccCCCCCceEEEEccCC---------------eEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeec
Q 019405 50 SSNCVLAASIDDSQNDPLLAVARKNG---------------LTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKR 114 (341)
Q Consensus 50 ~~~~~~~~s~~~~~~~~~l~~~~~dg---------------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (341)
..|..+.||+.+. ||.+-...+ .+.+||..+|..+..+...... .-.--+.-|..
T Consensus 72 ~~V~~~~fSP~~k----YL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~------~~~Wp~~k~s~ 141 (561)
T COG5354 72 PDVKYLDFSPNEK----YLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQP------YLGWPVLKFSI 141 (561)
T ss_pred CCceecccCcccc----eeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCc------ccccceeeeee
Confidence 4455556665554 888765544 4999999999888877763110 00110112222
Q ss_pred cccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC--CEEEE-----eeCCCeEE
Q 019405 115 QREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE--KFSLF-----GGKGVEVN 187 (341)
Q Consensus 115 ~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~--~~l~~-----~~~d~~v~ 187 (341)
++ .+++---...+.|+.+. .. . ......... ...|....++|.+ ..|+. .+.++.++
T Consensus 142 ~D--------~y~ARvv~~sl~i~e~t-~n-~---~~~p~~~lr---~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~ 205 (561)
T COG5354 142 DD--------KYVARVVGSSLYIHEIT-DN-I---EEHPFKNLR---PVGILDFSISPEGNHDELAYWTPEKLNKPAMVR 205 (561)
T ss_pred cc--------hhhhhhccCeEEEEecC-Cc-c---ccCchhhcc---ccceeeEEecCCCCCceEEEEccccCCCCcEEE
Confidence 22 22222245567777751 11 1 111111111 2456777788753 33442 46678899
Q ss_pred EEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEe-----------CCCeEEEEEcCCCCceeEEEEe
Q 019405 188 VWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-----------NDHQVRLYDTSAQRRPVMSFDF 256 (341)
Q Consensus 188 i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-----------~d~~i~iwd~~~~~~~~~~~~~ 256 (341)
+|.+..+..+..-.--.. .-..+.| .+.|++|+.-- ....+++++++....++ ...
T Consensus 206 i~sIp~~s~l~tk~lfk~---------~~~qLkW--~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V--~~~ 272 (561)
T COG5354 206 ILSIPKNSVLVTKNLFKV---------SGVQLKW--QVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPV--EKD 272 (561)
T ss_pred EEEccCCCeeeeeeeEee---------cccEEEE--ecCCceEEEEEEEeeecccceeccceEEEEeecccccce--ecc
Confidence 998875554432211110 0123455 56666654311 12468888888544333 324
Q ss_pred cCCCeEEEEEcCCCceEEE--EeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCC---CcEEEEEcC
Q 019405 257 RETPIKAVAEEPDSFNIYI--GNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLD---SYLRFWDIK 331 (341)
Q Consensus 257 ~~~~v~~~~~~~~~~~l~~--g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d---g~v~iwd~~ 331 (341)
-.++|...+|.|.++.+++ |-.+..+.++|++.. +...+. ...=+.+.|+|.+++++.++.| |.+-+||..
T Consensus 273 ~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P---e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~ 348 (561)
T COG5354 273 LKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP---EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPA 348 (561)
T ss_pred ccccceeeeecccCCceeEEecccccceeecccccc-eEEecC---CcccccccccCcccEEEEecCCccccceEEeccC
Confidence 5689999999998876654 457889999999865 444443 4556778899999999988765 689999987
Q ss_pred CCcee
Q 019405 332 TRQLL 336 (341)
Q Consensus 332 ~~~~~ 336 (341)
....+
T Consensus 349 ~rf~~ 353 (561)
T COG5354 349 GRFKV 353 (561)
T ss_pred CceEE
Confidence 65443
No 307
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.80 E-value=9.7e-06 Score=70.18 Aligned_cols=154 Identities=12% Similarity=0.054 Sum_probs=100.5
Q ss_pred ceEEEEecCCCCE-EEEeeC---CCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEe-C--C
Q 019405 164 TIAFSKVDISEKF-SLFGGK---GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-N--D 236 (341)
Q Consensus 164 ~i~~~~~~~~~~~-l~~~~~---d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~--d 236 (341)
......|+||++. ++..+. +..|.++|+.+++........ +......| +||++.++... . +
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~----------g~~~~~~~--SPDG~~la~~~~~~g~ 256 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQ----------GMLVVSDV--SKDGSKLLLTMAPKGQ 256 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCC----------CcEEeeEE--CCCCCEEEEEEccCCC
Confidence 6778899999984 554333 356999999887665433321 22445678 89998776543 2 3
Q ss_pred CeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeC-CC--CEEEEECCCCeEEeEEeccccCceeEEEecCCC
Q 019405 237 HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SG--DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL 313 (341)
Q Consensus 237 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-dg--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~ 313 (341)
..|.++|+.+++ ...+..+........|+|||+.|+..+. .+ .|++.|+.+++........ . ....|+|+|
T Consensus 257 ~~Iy~~dl~~g~--~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g-~---~~~~~SPDG 330 (419)
T PRK04043 257 PDIYLYDTNTKT--LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG-K---NNSSVSTYK 330 (419)
T ss_pred cEEEEEECCCCc--EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC-C---cCceECCCC
Confidence 568888887654 4445444433445689999987776553 33 5888899877664333211 1 124899999
Q ss_pred CEEEEEeCC---------CcEEEEEcCCCce
Q 019405 314 PIIASCGLD---------SYLRFWDIKTRQL 335 (341)
Q Consensus 314 ~~l~s~~~d---------g~v~iwd~~~~~~ 335 (341)
+.|+..+.. ..|.+.|+.++..
T Consensus 331 ~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~ 361 (419)
T PRK04043 331 NYIVYSSRETNNEFGKNTFNLYLISTNSDYI 361 (419)
T ss_pred CEEEEEEcCCCcccCCCCcEEEEEECCCCCe
Confidence 988766643 3688888887753
No 308
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.80 E-value=1.8e-07 Score=75.80 Aligned_cols=82 Identities=20% Similarity=0.228 Sum_probs=67.9
Q ss_pred CCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEE-ecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCC
Q 019405 212 TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD-FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG 290 (341)
Q Consensus 212 ~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~ 290 (341)
|-..++.+++ +||+++++++..|..|++-....... +..+. +|..-|..++.-++. .|++|+.|++|++||+.+|
T Consensus 150 hvSml~dVav--S~D~~~IitaDRDEkIRvs~ypa~f~-IesfclGH~eFVS~isl~~~~-~LlS~sGD~tlr~Wd~~sg 225 (390)
T KOG3914|consen 150 HVSMLLDVAV--SPDDQFIITADRDEKIRVSRYPATFV-IESFCLGHKEFVSTISLTDNY-LLLSGSGDKTLRLWDITSG 225 (390)
T ss_pred hhhhhheeee--cCCCCEEEEecCCceEEEEecCcccc-hhhhccccHhheeeeeeccCc-eeeecCCCCcEEEEecccC
Confidence 4566999999 89999999999999999987765433 44443 599999999987654 5899999999999999999
Q ss_pred eEEeEEe
Q 019405 291 KLLGCFI 297 (341)
Q Consensus 291 ~~~~~~~ 297 (341)
+.+.++.
T Consensus 226 k~L~t~d 232 (390)
T KOG3914|consen 226 KLLDTCD 232 (390)
T ss_pred Ccccccc
Confidence 8877654
No 309
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=5.3e-06 Score=70.46 Aligned_cols=112 Identities=17% Similarity=0.207 Sum_probs=76.1
Q ss_pred eeeeEEEEEecCCCCEEEEEeC---CCeEEEEEcCC-CCce--eEEEEecCCCeEEEEEcCCCceEEEEe---CCCCEEE
Q 019405 214 TWFTSAAFLSIDDHRKFVAGTN---DHQVRLYDTSA-QRRP--VMSFDFRETPIKAVAEEPDSFNIYIGN---GSGDLAS 284 (341)
Q Consensus 214 ~~v~~~~~~~~~~~~~l~~~~~---d~~i~iwd~~~-~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~g~---~dg~i~i 284 (341)
..|...+| .|.|+.+++-+. ..++.+|.+.+ ...+ +..+. ....+.+.|+|.|++++++. ..|.+.+
T Consensus 446 e~vi~FaW--EP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F 521 (698)
T KOG2314|consen 446 ESVIAFAW--EPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEF 521 (698)
T ss_pred hheeeeee--ccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEE
Confidence 44777888 888988877554 35788888873 2222 33332 34578899999999988754 4688999
Q ss_pred EECCCCeEEeEE-eccccCceeEEEecCCCCEEEEEeC------CCcEEEEEcC
Q 019405 285 VDIRTGKLLGCF-IGKCSGSIRSIARHPTLPIIASCGL------DSYLRFWDIK 331 (341)
Q Consensus 285 wd~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~s~~~------dg~v~iwd~~ 331 (341)
+|..-..+...- ..| ...+.+.|.|.|+++++++. |.--+||+.+
T Consensus 522 ~D~~~a~~k~~~~~eh--~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 522 YDTDYADLKDTASPEH--FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred EecchhhhhhccCccc--cccccceECCCCCEEEEeeehhhhccccceEEEEee
Confidence 998742222221 222 35677899999999999874 4445677765
No 310
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.73 E-value=7e-05 Score=60.33 Aligned_cols=190 Identities=16% Similarity=0.105 Sum_probs=117.4
Q ss_pred eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEec-CCCCEEEEeeCCCeEEEEECCCCceeeecCCC
Q 019405 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD-ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP 203 (341)
Q Consensus 125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~-~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~ 203 (341)
.+++-...+.+..|+.. .+....+... . ...+.+. +++ .++.+...+ +.++|..+++........
T Consensus 14 l~~~D~~~~~i~~~~~~---------~~~~~~~~~~--~-~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 14 LYWVDIPGGRIYRVDPD---------TGEVEVIDLP--G-PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp EEEEETTTTEEEEEETT---------TTEEEEEESS--S-EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEEE
T ss_pred EEEEEcCCCEEEEEECC---------CCeEEEEecC--C-CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeecc
Confidence 55555566777777653 2344444432 2 6677777 564 455555554 566699887544333321
Q ss_pred CCCccCccCCeeeeEEEEEecCCCCEEEEEeCC--------CeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEE-
Q 019405 204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND--------HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIY- 274 (341)
Q Consensus 204 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d--------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~- 274 (341)
... ......+.+++ .++|++.++.... |.|..++.. ++ +..+...-...+.++|+|+++.|+
T Consensus 80 ~~~----~~~~~~ND~~v--d~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~--~~~~~~~~~~pNGi~~s~dg~~lyv 150 (246)
T PF08450_consen 80 DGG----VPFNRPNDVAV--DPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK--VTVVADGLGFPNGIAFSPDGKTLYV 150 (246)
T ss_dssp TTC----SCTEEEEEEEE---TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE--EEEEEEEESSEEEEEEETTSSEEEE
T ss_pred CCC----cccCCCceEEE--cCCCCEEEEecCCCccccccccceEEECCC-Ce--EEEEecCcccccceEECCcchheee
Confidence 100 01255889999 8899877775543 457777766 33 333333345678999999998776
Q ss_pred EEeCCCCEEEEECCC--CeE-----EeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 275 IGNGSGDLASVDIRT--GKL-----LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 275 ~g~~dg~i~iwd~~~--~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
+-+..+.|..+++.. .+. ...+... .+..-.+++..+|++.++.-..+.|.++|.+ |+.+..+
T Consensus 151 ~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i 220 (246)
T PF08450_consen 151 ADSFNGRIWRFDLDADGGELSNRRVFIDFPGG-PGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREI 220 (246)
T ss_dssp EETTTTEEEEEEEETTTCCEEEEEEEEE-SSS-SCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEE
T ss_pred cccccceeEEEeccccccceeeeeeEEEcCCC-CcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEE
Confidence 555678899998853 211 2222221 2247789999999988888788999999988 8887765
No 311
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.71 E-value=1.2e-05 Score=64.77 Aligned_cols=166 Identities=22% Similarity=0.252 Sum_probs=113.5
Q ss_pred eEEEEecC-CCCEEEEeeCCCe-EEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeC-----CC
Q 019405 165 IAFSKVDI-SEKFSLFGGKGVE-VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-----DH 237 (341)
Q Consensus 165 i~~~~~~~-~~~~l~~~~~d~~-v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-----d~ 237 (341)
...++.+| ....++.+-.-|+ ..+||..+++....+..+.... ..-.-.| +++|++|++.-. .|
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRH-------FyGHg~f--s~dG~~LytTEnd~~~g~G 77 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRH-------FYGHGVF--SPDGRLLYTTENDYETGRG 77 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCE-------EecCEEE--cCCCCEEEEeccccCCCcE
Confidence 34567788 4556666666654 7799999999887776654331 1223467 899999998655 47
Q ss_pred eEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeC------------------CCCEEEEECCCCeEEeEEec-
Q 019405 238 QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG------------------SGDLASVDIRTGKLLGCFIG- 298 (341)
Q Consensus 238 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~------------------dg~i~iwd~~~~~~~~~~~~- 298 (341)
.|-|||....-..+..+..|.-.-..+.+.|||+.|+++.. +..+...|..+|+++.+..-
T Consensus 78 ~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp 157 (305)
T PF07433_consen 78 VIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELP 157 (305)
T ss_pred EEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecC
Confidence 89999999433347777776656667889999977777632 22355566677765544211
Q ss_pred ---c-----------------------------------------------------ccCceeEEEecCCCCEEEEEe-C
Q 019405 299 ---K-----------------------------------------------------CSGSIRSIARHPTLPIIASCG-L 321 (341)
Q Consensus 299 ---~-----------------------------------------------------~~~~i~~~~~~~~~~~l~s~~-~ 321 (341)
| ..+-|-+|++++++..++..| .
T Consensus 158 ~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPr 237 (305)
T PF07433_consen 158 PDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPR 237 (305)
T ss_pred ccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCC
Confidence 1 123478888989888765554 6
Q ss_pred CCcEEEEEcCCCceeeee
Q 019405 322 DSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 322 dg~v~iwd~~~~~~~~~~ 339 (341)
-+.+.+||..+++++...
T Consensus 238 Gg~~~~~d~~tg~~~~~~ 255 (305)
T PF07433_consen 238 GGRVAVWDAATGRLLGSV 255 (305)
T ss_pred CCEEEEEECCCCCEeecc
Confidence 678999999999887653
No 312
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.71 E-value=1.3e-05 Score=69.43 Aligned_cols=207 Identities=12% Similarity=0.029 Sum_probs=110.6
Q ss_pred EeccCCCCCce-EEEEcc---CCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEccc
Q 019405 57 ASIDDSQNDPL-LAVARK---NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK 132 (341)
Q Consensus 57 ~s~~~~~~~~~-l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 132 (341)
.++.++|+|+. ++..+. +..|.++|+.+++....... .+......| .+++. ..+++.+.+
T Consensus 191 ~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~---------~g~~~~~~~-SPDG~------~la~~~~~~ 254 (419)
T PRK04043 191 IFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASS---------QGMLVVSDV-SKDGS------KLLLTMAPK 254 (419)
T ss_pred EeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecC---------CCcEEeeEE-CCCCC------EEEEEEccC
Confidence 34555555654 554333 35689999988765443322 122223334 33332 144555555
Q ss_pred ceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCC-C--eEEEEECCCCceeeecCCCCCCccC
Q 019405 133 GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKG-V--EVNVWDLDKCEKIWTAKPPPKNSLG 209 (341)
Q Consensus 133 g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~--~v~i~d~~~~~~~~~~~~~~~~~~~ 209 (341)
+.-.||-++.. .+..+.... .........|+|||+.|+..+.. + .|.+.|+.+++..+.....
T Consensus 255 g~~~Iy~~dl~-------~g~~~~LT~-~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g------ 320 (419)
T PRK04043 255 GQPDIYLYDTN-------TKTLTQITN-YPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG------ 320 (419)
T ss_pred CCcEEEEEECC-------CCcEEEccc-CCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC------
Confidence 55555544321 111221111 11122345799999988766542 2 6888888877653322211
Q ss_pred ccCCeeeeEEEEEecCCCCEEEEEeCC---------CeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCC-
Q 019405 210 IFTPTWFTSAAFLSIDDHRKFVAGTND---------HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS- 279 (341)
Q Consensus 210 ~~~~~~v~~~~~~~~~~~~~l~~~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d- 279 (341)
. ....| +|+++.|+..... ..|.+.|+.++. .+.+... .......|+|||+.|+....+
T Consensus 321 ----~--~~~~~--SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~--~~~LT~~-~~~~~p~~SPDG~~I~f~~~~~ 389 (419)
T PRK04043 321 ----K--NNSSV--STYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY--IRRLTAN-GVNQFPRFSSDGGSIMFIKYLG 389 (419)
T ss_pred ----C--cCceE--CCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC--eEECCCC-CCcCCeEECCCCCEEEEEEccC
Confidence 1 11367 8999988876643 367888887754 3444433 233358899999887765543
Q ss_pred C--CEEEEECCCCeEEeEEeccccCceeE
Q 019405 280 G--DLASVDIRTGKLLGCFIGKCSGSIRS 306 (341)
Q Consensus 280 g--~i~iwd~~~~~~~~~~~~~~~~~i~~ 306 (341)
+ .+.+.++.. .....+... .+.+..
T Consensus 390 ~~~~L~~~~l~g-~~~~~l~~~-~g~~~~ 416 (419)
T PRK04043 390 NQSALGIIRLNY-NKSFLFPLK-VGKIQS 416 (419)
T ss_pred CcEEEEEEecCC-CeeEEeecC-CCccCC
Confidence 2 366667753 333334332 344443
No 313
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.69 E-value=1.1e-07 Score=83.05 Aligned_cols=158 Identities=18% Similarity=0.226 Sum_probs=116.7
Q ss_pred ceEEEEecCCC--CEEEEeeCCCeEEEEECCC---CceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCe
Q 019405 164 TIAFSKVDISE--KFSLFGGKGVEVNVWDLDK---CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ 238 (341)
Q Consensus 164 ~i~~~~~~~~~--~~l~~~~~d~~v~i~d~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~ 238 (341)
.+-...|+|.. .+-++......-.+|++.. ......+.+| ...|+.+.|+ ......+++++.|-.
T Consensus 69 ~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhgh---------sraitd~n~~-~q~pdVlatcsvdt~ 138 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGH---------SRAITDINFN-PQHPDVLATCSVDTY 138 (1081)
T ss_pred hhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecC---------ccceeccccC-CCCCcceeecccccc
Confidence 35566676543 3344444444566788753 2222333443 3668899995 334568899999999
Q ss_pred EEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCC-eEEeEEeccccCceeEEEecCCC-CEE
Q 019405 239 VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG-KLLGCFIGKCSGSIRSIARHPTL-PII 316 (341)
Q Consensus 239 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~~~~~~i~~~~~~~~~-~~l 316 (341)
+..||++....++..+..-......++|+.....+.+.+....|++||++.| .++..+++| -..|+.++|..-- ..+
T Consensus 139 vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~-vs~vn~~~fnr~~~s~~ 217 (1081)
T KOG0309|consen 139 VHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGH-VSSVNSIDFNRFKYSEI 217 (1081)
T ss_pred ceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEeccc-ceeeehHHHhhhhhhhh
Confidence 9999999988888877766667788999986666777788889999999866 578888887 8899999997643 468
Q ss_pred EEEeCCCcEEEEEcCC
Q 019405 317 ASCGLDSYLRFWDIKT 332 (341)
Q Consensus 317 ~s~~~dg~v~iwd~~~ 332 (341)
.+++.|++|++||...
T Consensus 218 ~s~~~d~tvkfw~y~k 233 (1081)
T KOG0309|consen 218 MSSSNDGTVKFWDYSK 233 (1081)
T ss_pred cccCCCCceeeecccc
Confidence 8999999999999864
No 314
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.68 E-value=5.7e-05 Score=58.46 Aligned_cols=276 Identities=13% Similarity=0.093 Sum_probs=128.7
Q ss_pred eeecCCCCC-ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCC
Q 019405 6 TLECPGCPP-LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN 84 (341)
Q Consensus 6 ~~~~~~~~~-~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~ 84 (341)
++||..+-- -.++.|...|.+.+.....+ .....+.. .+.|.+-+ .-.+++.++..|+.|++.+..|..+
T Consensus 54 RiE~sa~vvgdfVV~GCy~g~lYfl~~~tG-----s~~w~f~~-~~~vk~~a---~~d~~~glIycgshd~~~yalD~~~ 124 (354)
T KOG4649|consen 54 RIECSAIVVGDFVVLGCYSGGLYFLCVKTG-----SQIWNFVI-LETVKVRA---QCDFDGGLIYCGSHDGNFYALDPKT 124 (354)
T ss_pred eeeeeeEEECCEEEEEEccCcEEEEEecch-----hheeeeee-hhhhccce---EEcCCCceEEEecCCCcEEEecccc
Confidence 344444421 22455666666666666554 12112211 11222111 1134456899999999999999998
Q ss_pred CcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCc
Q 019405 85 GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGT 164 (341)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~ 164 (341)
..++.+.+.- ..-..+-+..+.+. .|.++...|.+.--..+..+ .-.+|.....++
T Consensus 125 ~~cVykskcg--------G~~f~sP~i~~g~~--------sly~a~t~G~vlavt~~~~~--------~~~~w~~~~~~P 180 (354)
T KOG4649|consen 125 YGCVYKSKCG--------GGTFVSPVIAPGDG--------SLYAAITAGAVLAVTKNPYS--------STEFWAATRFGP 180 (354)
T ss_pred cceEEecccC--------CceeccceecCCCc--------eEEEEeccceEEEEccCCCC--------cceehhhhcCCc
Confidence 7777665441 11111112222122 55555555655443332211 234455444455
Q ss_pred eEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeE-----
Q 019405 165 IAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV----- 239 (341)
Q Consensus 165 i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i----- 239 (341)
|..--.. -+..+..+.-||.+.-+| ..|++++.+..... |..---...|..+.+..+..+..+
T Consensus 181 iF~splc-v~~sv~i~~VdG~l~~f~-~sG~qvwr~~t~Gp----------If~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~ 248 (354)
T KOG4649|consen 181 IFASPLC-VGSSVIITTVDGVLTSFD-ESGRQVWRPATKGP----------IFMEPCESRPSCQQISLENENCFCAPLPI 248 (354)
T ss_pred cccCcee-ccceEEEEEeccEEEEEc-CCCcEEEeecCCCc----------eecccccCCCcceEEEEecCCeEEEeccc
Confidence 5432111 134455566677777777 56666665544321 100000001222333333333322
Q ss_pred ---EEEEcCCCCceeEEEEecCCCeEEEEEc-C---CCceEEEEeCCCCEEEEECCCCeEEeEEeccccCc---eeEEE-
Q 019405 240 ---RLYDTSAQRRPVMSFDFRETPIKAVAEE-P---DSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGS---IRSIA- 308 (341)
Q Consensus 240 ---~iwd~~~~~~~~~~~~~~~~~v~~~~~~-~---~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~---i~~~~- 308 (341)
-+|..+.+.. .+.+- .+-...+++ | ..++|..++.||.+.|.-.+. .+.....+ .+. +..+.
T Consensus 249 ~ghL~w~~~~g~t-~~vy~---~p~l~F~~h~~~~S~~~ll~~~s~dgkv~il~~~~--sl~~~~s~-~g~lq~~~~~el 321 (354)
T KOG4649|consen 249 AGHLLWATQSGTT-LHVYL---SPKLRFDLHSPGISYPKLLRRSSGDGKVMILMTSK--SLAEISSN-GGELQNLEAIEL 321 (354)
T ss_pred cceEEEEecCCcE-EEEEe---CcccceeccCCCCcchhhhhhhcCCCcEEEEEecc--cccccccC-CCccceEEEeec
Confidence 3444444321 11111 000011111 1 135677888999998874331 12222222 221 22221
Q ss_pred ----e-cC--CCCEEEEEeCCCcEEEEEcCCC
Q 019405 309 ----R-HP--TLPIIASCGLDSYLRFWDIKTR 333 (341)
Q Consensus 309 ----~-~~--~~~~l~s~~~dg~v~iwd~~~~ 333 (341)
| +| -+..|+.|+.|..|+-||+.++
T Consensus 322 ~~eIFsSPvii~grl~igcRDdYv~cldl~~~ 353 (354)
T KOG4649|consen 322 SNEIFSSPVIIDGRLLIGCRDDYVRCLDLDTW 353 (354)
T ss_pred CcccccCCeEEccEEEEEEccCeEEEEecccc
Confidence 2 22 1235778889999999999875
No 315
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.66 E-value=6e-05 Score=60.79 Aligned_cols=220 Identities=16% Similarity=0.104 Sum_probs=129.6
Q ss_pred eEEEEccCCe-EEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEc-----ccceeEEEEe
Q 019405 67 LLAVARKNGL-TDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT-----TKGKASMRSI 140 (341)
Q Consensus 67 ~l~~~~~dg~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~g~~~i~~~ 140 (341)
.++.+..-|+ ..+||..+++....+.. +.......-..|+.+.. .|++.- ..|.|-|||+
T Consensus 19 avafaRRPG~~~~v~D~~~g~~~~~~~a-------~~gRHFyGHg~fs~dG~-------~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 19 AVAFARRPGTFALVFDCRTGQLLQRLWA-------PPGRHFYGHGVFSPDGR-------LLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred EEEEEeCCCcEEEEEEcCCCceeeEEcC-------CCCCEEecCEEEcCCCC-------EEEEeccccCCCcEEEEEEEC
Confidence 4666766665 78899999988776654 23344555555665552 444432 2478888987
Q ss_pred eecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEee------------------CCCeEEEEECCCCceeeecCC
Q 019405 141 EVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG------------------KGVEVNVWDLDKCEKIWTAKP 202 (341)
Q Consensus 141 ~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~------------------~d~~v~i~d~~~~~~~~~~~~ 202 (341)
.. ....+..|.. ++-.-..+.+.||++.|+++- ++-.+...|..+|+.+.+...
T Consensus 85 ~~-------~~~ri~E~~s-~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~L 156 (305)
T PF07433_consen 85 AR-------GYRRIGEFPS-HGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVEL 156 (305)
T ss_pred cC-------CcEEEeEecC-CCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeec
Confidence 51 1224445553 222345667888887777642 233455566666766655332
Q ss_pred CCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCC-------eEEEEEcCCCCceeEEEE-------ecCCCeEEEEEcC
Q 019405 203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH-------QVRLYDTSAQRRPVMSFD-------FRETPIKAVAEEP 268 (341)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~-------~i~iwd~~~~~~~~~~~~-------~~~~~v~~~~~~~ 268 (341)
+... |...+..+++ .++|..++..-..| .|-+++... . +..+. .-...+-+|++++
T Consensus 157 p~~~-----~~lSiRHLa~--~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~-~~~~~~p~~~~~~l~~Y~gSIa~~~ 226 (305)
T PF07433_consen 157 PPDL-----HQLSIRHLAV--DGDGTVAFAMQYQGDPGDAPPLVALHRRGG--A-LRLLPAPEEQWRRLNGYIGSIAADR 226 (305)
T ss_pred Cccc-----cccceeeEEe--cCCCcEEEEEecCCCCCccCCeEEEEcCCC--c-ceeccCChHHHHhhCCceEEEEEeC
Confidence 1110 2245777787 66664443332222 133333221 1 11111 1235688999999
Q ss_pred CCceEEEEe-CCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCC
Q 019405 269 DSFNIYIGN-GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLD 322 (341)
Q Consensus 269 ~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d 322 (341)
++.++++.+ ..+.+.+||..+++++....-. .+..++-.+++ ++++.+.-
T Consensus 227 ~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~---D~cGva~~~~~-f~~ssG~G 277 (305)
T PF07433_consen 227 DGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP---DACGVAPTDDG-FLVSSGQG 277 (305)
T ss_pred CCCEEEEECCCCCEEEEEECCCCCEeeccccC---ceeeeeecCCc-eEEeCCCc
Confidence 998776655 6788999999999998877643 56777777777 56555443
No 316
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.64 E-value=3.2e-05 Score=69.25 Aligned_cols=202 Identities=14% Similarity=0.074 Sum_probs=125.5
Q ss_pred ceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCc-eeeEeeeeccccccccccceeEEEcccc-----eeEEEE
Q 019405 66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDG-IVGLHLFKRQREESSSRSRTLLTCTTKG-----KASMRS 139 (341)
Q Consensus 66 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~g-----~~~i~~ 139 (341)
..++.|+.+|.|.+.+-. -+.+..++.+ ... +..+...+... .|++..+|+ .++||+
T Consensus 36 ~~vvigt~~G~V~~Ln~s-~~~~~~fqa~--------~~siv~~L~~~~~~~--------~L~sv~Ed~~~np~llkiw~ 98 (933)
T KOG2114|consen 36 GSVVIGTADGRVVILNSS-FQLIRGFQAY--------EQSIVQFLYILNKQN--------FLFSVGEDEQGNPVLLKIWD 98 (933)
T ss_pred ceEEEeeccccEEEeccc-ceeeehheec--------chhhhhHhhcccCce--------EEEEEeecCCCCceEEEEec
Confidence 369999999999998752 3333444442 122 22232223223 677766664 478999
Q ss_pred eeecccccccCCceE---EEEEeec---CCceEEEEecCCCCEEEEeeCCCeEEEEECCC--CceeeecCCCCCCccCcc
Q 019405 140 IEVTKVSAESSCSTV---KSWNVCA---SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDK--CEKIWTAKPPPKNSLGIF 211 (341)
Q Consensus 140 ~~~~~~~~~~~~~~v---~~~~~~~---~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~--~~~~~~~~~~~~~~~~~~ 211 (341)
++...... ....+ +++.... ..++.+++++.+-+.+|+|..+|.|..+.-+- .+-.+.-..+.
T Consensus 99 lek~~~n~--sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~------- 169 (933)
T KOG2114|consen 99 LEKVDKNN--SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHR------- 169 (933)
T ss_pred ccccCCCC--CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeecc-------
Confidence 87664221 12233 4544222 45788999999999999999999999885331 11111111111
Q ss_pred CCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCcee-EEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCC
Q 019405 212 TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPV-MSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG 290 (341)
Q Consensus 212 ~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~ 290 (341)
...+|+.+++ ..++..++....-..|.+|.+.... |. ..+..|..++.|..+++....+++++ +..+.+||....
T Consensus 170 ~~~pITgL~~--~~d~~s~lFv~Tt~~V~~y~l~gr~-p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~ 245 (933)
T KOG2114|consen 170 GKEPITGLAL--RSDGKSVLFVATTEQVMLYSLSGRT-PSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGR 245 (933)
T ss_pred CCCCceeeEE--ecCCceeEEEEecceeEEEEecCCC-cceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCc
Confidence 2367999999 4555552333334579999998543 44 44677788899999988665455544 457999998866
Q ss_pred eEEeEEe
Q 019405 291 KLLGCFI 297 (341)
Q Consensus 291 ~~~~~~~ 297 (341)
++-..|.
T Consensus 246 ~~cfaf~ 252 (933)
T KOG2114|consen 246 GPCFAFE 252 (933)
T ss_pred ceeeeec
Confidence 6666665
No 317
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.63 E-value=0.00032 Score=62.70 Aligned_cols=167 Identities=16% Similarity=0.210 Sum_probs=101.3
Q ss_pred EEecCCCCEEEEeeCC----------------CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCC---
Q 019405 168 SKVDISEKFSLFGGKG----------------VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR--- 228 (341)
Q Consensus 168 ~~~~~~~~~l~~~~~d----------------~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--- 228 (341)
+++++...+++.+..+ ..|.-.|+++|+..+.++................-+.. ..+++
T Consensus 239 ~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~--~~~G~~~~ 316 (527)
T TIGR03075 239 GSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDL--KKDGKPRK 316 (527)
T ss_pred eeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEe--ccCCcEEE
Confidence 4666766666655411 16888899999999988875544333221122222233 34565
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeEE--------E----EecC-CCe----------------------------EEEEEc
Q 019405 229 KFVAGTNDHQVRLYDTSAQRRPVMS--------F----DFRE-TPI----------------------------KAVAEE 267 (341)
Q Consensus 229 ~l~~~~~d~~i~iwd~~~~~~~~~~--------~----~~~~-~~v----------------------------~~~~~~ 267 (341)
.++.+..+|.+.+.|.++++. +.. + .... .++ ..++++
T Consensus 317 ~v~~~~K~G~~~vlDr~tG~~-i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~D 395 (527)
T TIGR03075 317 LLAHADRNGFFYVLDRTNGKL-LSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYS 395 (527)
T ss_pred EEEEeCCCceEEEEECCCCce-eccccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceEC
Confidence 778999999999999998763 311 1 0000 000 125566
Q ss_pred CCCceEEEEeCC---------------------------------CCEEEEECCCCeEEeEEeccccCceeEEEecCCCC
Q 019405 268 PDSFNIYIGNGS---------------------------------GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP 314 (341)
Q Consensus 268 ~~~~~l~~g~~d---------------------------------g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 314 (341)
|+..++++...+ |.|.-+|+.+++.+...+.. ....-+. ..-.+.
T Consensus 396 p~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~-~p~~~~~-l~t~g~ 473 (527)
T TIGR03075 396 PKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKED-FPLWGGV-LATAGD 473 (527)
T ss_pred CCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEecCC-CCCCCcc-eEECCc
Confidence 655555443322 45777888888887766532 1111121 122455
Q ss_pred EEEEEeCCCcEEEEEcCCCceeeee
Q 019405 315 IIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 315 ~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
+++.++.||.++.+|.++|+.+.++
T Consensus 474 lvf~g~~~G~l~a~D~~TGe~lw~~ 498 (527)
T TIGR03075 474 LVFYGTLEGYFKAFDAKTGEELWKF 498 (527)
T ss_pred EEEEECCCCeEEEEECCCCCEeEEE
Confidence 7777888999999999999998765
No 318
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=2.3e-06 Score=75.72 Aligned_cols=147 Identities=22% Similarity=0.276 Sum_probs=106.7
Q ss_pred ceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEE
Q 019405 164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD 243 (341)
Q Consensus 164 ~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd 243 (341)
.+.|++++ +++++-|+.+|.|++++... .....+. +. . . .-+|.++++|+.||+|.|..
T Consensus 41 ~is~~av~--~~~~~~GtH~g~v~~~~~~~-~~~~~~~-~s---------~-~-------~~~Gey~asCS~DGkv~I~s 99 (846)
T KOG2066|consen 41 AISCCAVH--DKFFALGTHRGAVYLTTCQG-NPKTNFD-HS---------S-S-------ILEGEYVASCSDDGKVVIGS 99 (846)
T ss_pred HHHHHHhh--cceeeeccccceEEEEecCC-ccccccc-cc---------c-c-------ccCCceEEEecCCCcEEEee
Confidence 34455554 68899999999999998753 2211111 11 0 0 34799999999999999999
Q ss_pred cCCCCceeEEEEecCCCeEEEEEcCC-----CceEEEEeCCCCEEEEECCC---CeEEeEEeccccCceeEEEecCCCCE
Q 019405 244 TSAQRRPVMSFDFRETPIKAVAEEPD-----SFNIYIGNGSGDLASVDIRT---GKLLGCFIGKCSGSIRSIARHPTLPI 315 (341)
Q Consensus 244 ~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~g~~dg~i~iwd~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~ 315 (341)
+-+.+. ..++..+ .++.+++++|+ .+.+++|+.-| +.++.-+- ...+ .+... .++|.++.| .|++
T Consensus 100 l~~~~~-~~~~df~-rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~-eG~I~~i~W--~g~l 172 (846)
T KOG2066|consen 100 LFTDDE-ITQYDFK-RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEG-EGPIHSIKW--RGNL 172 (846)
T ss_pred ccCCcc-ceeEecC-CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecC-ccceEEEEe--cCcE
Confidence 887664 5555544 68999999997 47889999888 77775431 1222 34443 789999999 5778
Q ss_pred EEEEeCCCcEEEEEcCCCceeeee
Q 019405 316 IASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 316 l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
+|-++.+| |++||+.+++.+..+
T Consensus 173 IAWand~G-v~vyd~~~~~~l~~i 195 (846)
T KOG2066|consen 173 IAWANDDG-VKVYDTPTRQRLTNI 195 (846)
T ss_pred EEEecCCC-cEEEeccccceeecc
Confidence 99998887 899999998877654
No 319
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.55 E-value=3.5e-06 Score=75.60 Aligned_cols=180 Identities=16% Similarity=0.165 Sum_probs=123.3
Q ss_pred eEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccc
Q 019405 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS 146 (341)
Q Consensus 67 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~ 146 (341)
.++-|+....+..+|+.+.+..+..... ...+.-+ ..++ ..++.|...|++.+.|....+
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~--------a~~v~im---R~Nn-------r~lf~G~t~G~V~LrD~~s~~-- 208 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVS--------ASGVTIM---RYNN-------RNLFCGDTRGTVFLRDPNSFE-- 208 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeecc--------CCceEEE---EecC-------cEEEeecccceEEeecCCcCc--
Confidence 4777777778888888777665554431 1122222 2221 188999999999999987544
Q ss_pred cccCCceEEEEEeecCCceEEEEecCCCCEEEEeeC---------CCeEEEEECCCCceeeecCCCCCCccCccCCeeee
Q 019405 147 AESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK---------GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFT 217 (341)
Q Consensus 147 ~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~---------d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~ 217 (341)
+++.++. |.+.|..++. .|+.|+++|. |.-|++||++..+.+..+..+.. ..
T Consensus 209 ------~iht~~a-Hs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~----------P~ 269 (1118)
T KOG1275|consen 209 ------TIHTFDA-HSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYG----------PQ 269 (1118)
T ss_pred ------eeeeeec-cccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccC----------ch
Confidence 7778875 5566665544 6889998876 44589999988776655544432 23
Q ss_pred EEEEEecCCCCEEEEEeCCCeEEEEEcCCCCce---eEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEE
Q 019405 218 SAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP---VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVD 286 (341)
Q Consensus 218 ~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd 286 (341)
-+.|+|+ -...+++++..|+..+-|..+...| +..+......+..+.+++++..++.|..+|.|.+|.
T Consensus 270 flrf~Ps-l~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 270 FLRFHPS-LTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred hhhhccc-ccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 3466433 2356778888999999984432222 333344455699999999999999999999999996
No 320
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.53 E-value=0.00031 Score=57.53 Aligned_cols=235 Identities=12% Similarity=0.058 Sum_probs=127.5
Q ss_pred EccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccC
Q 019405 71 ARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESS 150 (341)
Q Consensus 71 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~ 150 (341)
|-..-.|.+||..+-+...++... ...+...+ .... .+.....+..+.++++.-..
T Consensus 63 G~RtDvv~~~D~~TL~~~~EI~iP-------~k~R~~~~---~~~~--------~~~ls~dgk~~~V~N~TPa~------ 118 (342)
T PF06433_consen 63 GERTDVVEIWDTQTLSPTGEIEIP-------PKPRAQVV---PYKN--------MFALSADGKFLYVQNFTPAT------ 118 (342)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEET-------TS-B--BS-----GG--------GEEE-TTSSEEEEEEESSSE------
T ss_pred ccceeEEEEEecCcCcccceEecC-------Ccchheec---cccc--------ceEEccCCcEEEEEccCCCC------
Confidence 333556999999998777776652 11112111 1111 33333444555666654222
Q ss_pred CceEEEEEeecCCceEEE------EecCC-CCEEEEeeCCCeEEEEECC-CCceeeecCCCCCCccCccCCeeeeEEEEE
Q 019405 151 CSTVKSWNVCASGTIAFS------KVDIS-EKFSLFGGKGVEVNVWDLD-KCEKIWTAKPPPKNSLGIFTPTWFTSAAFL 222 (341)
Q Consensus 151 ~~~v~~~~~~~~~~i~~~------~~~~~-~~~l~~~~~d~~v~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 222 (341)
.|.+.++..+.-+..+ -.-|. ...+.+-+.||.+.-..+. .|+....... .+...+...+..-++
T Consensus 119 --SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~----~F~~~~dp~f~~~~~- 191 (342)
T PF06433_consen 119 --SVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTK----VFDPDDDPLFEHPAY- 191 (342)
T ss_dssp --EEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEE----ESSTTTS-B-S--EE-
T ss_pred --eEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeecc----ccCCCCcccccccce-
Confidence 4455554433222211 11121 2446677788888888887 4554422110 011001111222233
Q ss_pred ecCCCCEEEEEeCCCeEEEEEcCCCCc-eeEEEEec------C----CCeEEEEEcCCCceEEEEeC---CC-------C
Q 019405 223 SIDDHRKFVAGTNDHQVRLYDTSAQRR-PVMSFDFR------E----TPIKAVAEEPDSFNIYIGNG---SG-------D 281 (341)
Q Consensus 223 ~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~------~----~~v~~~~~~~~~~~l~~g~~---dg-------~ 281 (341)
...+..++--+.+|.|+--|+..... ....+..- . +.-.-+++++....|++--. ++ .
T Consensus 192 -~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgte 270 (342)
T PF06433_consen 192 -SRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTE 270 (342)
T ss_dssp -ETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEE
T ss_pred -ECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceE
Confidence 34555666678899999998886542 12222110 0 12234777765544444221 22 3
Q ss_pred EEEEECCCCeEEeEEeccccCceeEEEecCCCC-EEEEE-eCCCcEEEEEcCCCceeeee
Q 019405 282 LASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP-IIASC-GLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 282 i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~-~~dg~v~iwd~~~~~~~~~~ 339 (341)
|.++|+.+++.+.++.. ..++.+|..+.+.+ +|++. ..++.+.+||..+|+.+.++
T Consensus 271 VWv~D~~t~krv~Ri~l--~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 271 VWVYDLKTHKRVARIPL--EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp EEEEETTTTEEEEEEEE--EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred EEEEECCCCeEEEEEeC--CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence 88889999999999985 34788999998765 66554 45789999999999998876
No 321
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=1e-05 Score=66.06 Aligned_cols=249 Identities=12% Similarity=0.056 Sum_probs=135.4
Q ss_pred ccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccc
Q 019405 45 WGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSR 124 (341)
Q Consensus 45 ~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (341)
+..+...+..++||+..+. ++..++.+.+|+|.|+++......+..+ ..+.+.+|--.+.+
T Consensus 189 lp~~g~~IrdlafSp~~~G---Ll~~asl~nkiki~dlet~~~vssy~a~---------~~~wSC~wDlde~h------- 249 (463)
T KOG1645|consen 189 LPGEGSFIRDLAFSPFNEG---LLGLASLGNKIKIMDLETSCVVSSYIAY---------NQIWSCCWDLDERH------- 249 (463)
T ss_pred ccccchhhhhhccCccccc---eeeeeccCceEEEEecccceeeeheecc---------CCceeeeeccCCcc-------
Confidence 4456677888888887763 6888999999999999998877777664 55666666544443
Q ss_pred eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEE------EecCCCCEEEEeeCCCeEEEEECCCCceee
Q 019405 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS------KVDISEKFSLFGGKGVEVNVWDLDKCEKIW 198 (341)
Q Consensus 125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~------~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~ 198 (341)
.+.+|..+|.+.|+|+.+....-......+ ...+|..+ +..+.+.+++....+ +..|++.-.....
T Consensus 250 ~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~------t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~ 321 (463)
T KOG1645|consen 250 VIYAGLQNGMVLVYDMRQPEGPLMELVANV------TINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECL 321 (463)
T ss_pred eeEEeccCceEEEEEccCCCchHhhhhhhh------ccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCC
Confidence 889999999999999987543211100111 11223332 223344555544433 5556553211110
Q ss_pred ecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCC-------eEEE-EEcCCCCceeEEE-Eec-CC------CeE
Q 019405 199 TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH-------QVRL-YDTSAQRRPVMSF-DFR-ET------PIK 262 (341)
Q Consensus 199 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~-------~i~i-wd~~~~~~~~~~~-~~~-~~------~v~ 262 (341)
.....+..++.+.++.+ .+..+.++.....+ .|-. -|...+. ++... ..+ .. .-.
T Consensus 322 ------p~vlele~pG~cismqy--~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~-pVc~~r~~~~Gs~~~kl~t~~ 392 (463)
T KOG1645|consen 322 ------PCVLELEPPGICISMQY--HGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGF-PVCGKRRTYFGSKQTKLSTTQ 392 (463)
T ss_pred ------CcccccCCCcceeeeee--cCccceEEEEecCCCCCccceeeeeeeccccCc-eeeeecccccCCccccccccc
Confidence 01111112344555555 33333333332220 0100 1111111 11111 011 00 001
Q ss_pred EEEEcCCCceEE-EEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecC-CCC-EEEEEeCCCcEEEEEcCC
Q 019405 263 AVAEEPDSFNIY-IGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHP-TLP-IIASCGLDSYLRFWDIKT 332 (341)
Q Consensus 263 ~~~~~~~~~~l~-~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~-~~~-~l~s~~~dg~v~iwd~~~ 332 (341)
.+.-.++..+|+ .|...+.+.+||+.+++.++++.. +.+|.+++... ++. +|+.- .|..++||..++
T Consensus 393 ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ~l~~--~epv~Dicp~~~n~~syLa~L-Td~~v~Iyk~es 462 (463)
T KOG1645|consen 393 AIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQTLAL--SEPVLDICPNDTNGSSYLALL-TDDRVHIYKNES 462 (463)
T ss_pred ceeccccccEEEEecCCcceeEEeccchhheeeeccc--CcceeecceeecCCcchhhhe-ecceEEEEecCC
Confidence 122234445554 455568899999999999999876 47888887654 343 55555 556788887653
No 322
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.52 E-value=2.3e-06 Score=73.37 Aligned_cols=74 Identities=19% Similarity=0.196 Sum_probs=62.7
Q ss_pred cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCC
Q 019405 257 RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR 333 (341)
Q Consensus 257 ~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 333 (341)
....+.+++++|+...++.|+.||.|.+||...+..... .. .-..+.++|||+|.+++.|+..|.+.+||+.-.
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~--ka-~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA--KA-EFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee--ee-cccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 567899999999999999999999999999976643322 22 446788999999999999999999999998754
No 323
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=2.5e-05 Score=69.90 Aligned_cols=194 Identities=14% Similarity=0.185 Sum_probs=122.5
Q ss_pred eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCC-----eEEEEECCCCc----
Q 019405 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGV-----EVNVWDLDKCE---- 195 (341)
Q Consensus 125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-----~v~i~d~~~~~---- 195 (341)
.++.|+.+|.+.+.+-.+. .++-|.+...+-+..+....+.++|++.+.|+ .|++|+++..+
T Consensus 37 ~vvigt~~G~V~~Ln~s~~---------~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 37 SVVIGTADGRVVILNSSFQ---------LIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred eEEEeeccccEEEecccce---------eeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 8999999999988864321 23555554433355555545557888877664 48999997532
Q ss_pred --eee--ecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCC--CC-ceeEEEEecCCCeEEEEEcC
Q 019405 196 --KIW--TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA--QR-RPVMSFDFRETPIKAVAEEP 268 (341)
Q Consensus 196 --~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~--~~-~~~~~~~~~~~~v~~~~~~~ 268 (341)
.+. .+..+... ..+.++.+++. +.+-+.+|+|-.||.|..+.-.- .. ...........+|+.+++..
T Consensus 108 P~c~~~~ri~~~~np----~~~~p~s~l~V--s~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~ 181 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNP----TNPSPASSLAV--SEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRS 181 (933)
T ss_pred cceeeeeeeeccCCC----CCCCcceEEEE--EccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEec
Confidence 120 11110100 12466778888 67788999999999999885321 11 11222223467999999988
Q ss_pred CCceEEEEeCCCCEEEEECCCCeEEeE-EeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCce
Q 019405 269 DSFNIYIGNGSGDLASVDIRTGKLLGC-FIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL 335 (341)
Q Consensus 269 ~~~~l~~g~~dg~i~iwd~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 335 (341)
++..++-......|.+|.+....+... +..| ...++|..+++....+++++. ..+.+|+....+.
T Consensus 182 d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~-G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~ 247 (933)
T KOG2114|consen 182 DGKSVLFVATTEQVMLYSLSGRTPSLKVLDNN-GISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGP 247 (933)
T ss_pred CCceeEEEEecceeEEEEecCCCcceeeeccC-CccceeeecCCCCccEEEecC-ceEEEEcCCCcce
Confidence 887633333455799999874333333 5554 889999999987775665544 3688888875443
No 324
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=1.7e-05 Score=70.40 Aligned_cols=173 Identities=14% Similarity=0.087 Sum_probs=117.5
Q ss_pred eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCC
Q 019405 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP 204 (341)
Q Consensus 125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~ 204 (341)
.++-|+.+|.+.+.+....+. ..++ +... +.+|.++++|+.||+|.|-.+.+.+....+...
T Consensus 51 ~~~~GtH~g~v~~~~~~~~~~---------~~~~--~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~- 112 (846)
T KOG2066|consen 51 FFALGTHRGAVYLTTCQGNPK---------TNFD--HSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFK- 112 (846)
T ss_pred eeeeccccceEEEEecCCccc---------cccc--cccc------ccCCceEEEecCCCcEEEeeccCCccceeEecC-
Confidence 788888889998887654320 1111 1111 568999999999999999998887766554433
Q ss_pred CCccCccCCeeeeEEEEEecCC-----CCEEEEEeCCCeEEEEEcCCCC-ceeEEEEecCCCeEEEEEcCCCceEEEEeC
Q 019405 205 KNSLGIFTPTWFTSAAFLSIDD-----HRKFVAGTNDHQVRLYDTSAQR-RPVMSFDFRETPIKAVAEEPDSFNIYIGNG 278 (341)
Q Consensus 205 ~~~~~~~~~~~v~~~~~~~~~~-----~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~ 278 (341)
.++.++++ +|+ .+.+++|+.-| +.++.-+-.. ..-..+....++|.++.|. |.++|=++.
T Consensus 113 ---------rpiksial--~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand 178 (846)
T KOG2066|consen 113 ---------RPIKSIAL--HPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWAND 178 (846)
T ss_pred ---------CcceeEEe--ccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecC
Confidence 34788899 555 56889999888 7777643211 1122455677899999995 558887776
Q ss_pred CCCEEEEECCCCeEEeEEecccc-----CceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405 279 SGDLASVDIRTGKLLGCFIGKCS-----GSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (341)
Q Consensus 279 dg~i~iwd~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 332 (341)
+| |++||+.+++.+..++..+. ..-..+.|.++.+++ .| ...+|+|..++.
T Consensus 179 ~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LV-IG-W~d~v~i~~I~~ 234 (846)
T KOG2066|consen 179 DG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLV-IG-WGDSVKICSIKK 234 (846)
T ss_pred CC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEE-Ee-cCCeEEEEEEec
Confidence 65 89999999888877765421 123456776665443 33 555788888873
No 325
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.42 E-value=0.00038 Score=61.73 Aligned_cols=94 Identities=15% Similarity=0.026 Sum_probs=66.9
Q ss_pred CCeEEEEEcCC----CCceeEEEEecCCCeEEEEEcCCCceEEEEe-CCCCEEEEECCCCeE------------EeEEec
Q 019405 236 DHQVRLYDTSA----QRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKL------------LGCFIG 298 (341)
Q Consensus 236 d~~i~iwd~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~dg~i~iwd~~~~~~------------~~~~~~ 298 (341)
++.|.+.|.++ +...+..+. -......+.++|||+++++++ .++.+.+.|+.+.+. ..+..-
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev 373 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL 373 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc
Confidence 35688888776 222233333 334567899999999887666 589999999987542 333332
Q ss_pred cccCceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405 299 KCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (341)
Q Consensus 299 ~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 332 (341)
. . .-...+|.++|....|--.|..|..||+.+
T Consensus 374 G-l-GPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 374 G-L-GPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred C-C-CcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 2 2 334678999999888889999999999876
No 326
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.42 E-value=0.00019 Score=67.03 Aligned_cols=208 Identities=15% Similarity=0.127 Sum_probs=130.0
Q ss_pred CCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEee
Q 019405 102 EDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG 181 (341)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~ 181 (341)
.++.|+++.++.... .++.+...|.+.+-+.+... +.+-. .-...|.+++|+||++.++..+
T Consensus 67 gd~~i~s~~fl~d~~--------~i~v~~~~G~iilvd~et~~---------~eivg-~vd~GI~aaswS~Dee~l~liT 128 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTN--------SICVITALGDIILVDPETLE---------LEIVG-NVDNGISAASWSPDEELLALIT 128 (1265)
T ss_pred CCcceEEEEEecccc--------eEEEEecCCcEEEEcccccc---------eeeee-eccCceEEEeecCCCcEEEEEe
Confidence 447899999887777 88899999999888654332 11111 1245789999999999999988
Q ss_pred CCCeEEEEECC----CCcee-------------------eecCCCCCCc------------cCccCCeeeeEEEEEecCC
Q 019405 182 KGVEVNVWDLD----KCEKI-------------------WTAKPPPKNS------------LGIFTPTWFTSAAFLSIDD 226 (341)
Q Consensus 182 ~d~~v~i~d~~----~~~~~-------------------~~~~~~~~~~------------~~~~~~~~v~~~~~~~~~~ 226 (341)
..+++.+-+-. ..+.+ ..+.+..+.. -++...+.=.++.| ..|
T Consensus 129 ~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsW--RgD 206 (1265)
T KOG1920|consen 129 GRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISW--RGD 206 (1265)
T ss_pred CCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEE--ccC
Confidence 88777665431 11111 1111111000 00001122345888 789
Q ss_pred CCEEEEE-----eCCCeEEEEEcCCCCceeEEEE-ecCCCeEEEEEcCCCceEEEEe---CCCCEEEEECCCCeE----E
Q 019405 227 HRKFVAG-----TNDHQVRLYDTSAQRRPVMSFD-FRETPIKAVAEEPDSFNIYIGN---GSGDLASVDIRTGKL----L 293 (341)
Q Consensus 227 ~~~l~~~-----~~d~~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~g~---~dg~i~iwd~~~~~~----~ 293 (341)
|.++++. ..-+.|++||.. +. +.... ....--.+++|-|.|..+++-. .|+.|.+|.- +|.. .
T Consensus 207 g~~fAVs~~~~~~~~RkirV~drE-g~--Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~ 282 (1265)
T KOG1920|consen 207 GEYFAVSFVESETGTRKIRVYDRE-GA--LNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFV 282 (1265)
T ss_pred CcEEEEEEEeccCCceeEEEeccc-ch--hhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccc
Confidence 9999883 223799999977 22 22111 1223345799999999888754 4567888874 3332 2
Q ss_pred eEEeccccCceeEEEecCCCCEEEE---EeCCCcEEEEEcCCCc
Q 019405 294 GCFIGKCSGSIRSIARHPTLPIIAS---CGLDSYLRFWDIKTRQ 334 (341)
Q Consensus 294 ~~~~~~~~~~i~~~~~~~~~~~l~s---~~~dg~v~iwd~~~~~ 334 (341)
..++.. ..+|..++|+.++..|+. ......|++|-+.+..
T Consensus 283 l~~p~d-e~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 283 LPFPLD-EKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred cCCccc-ccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 223332 445999999999999887 4455569999887643
No 327
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.41 E-value=0.00039 Score=61.91 Aligned_cols=243 Identities=14% Similarity=0.107 Sum_probs=132.6
Q ss_pred eEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCcee--eEeeeeccccccccccceeEEEcccceeEEEEeeecc
Q 019405 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIV--GLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK 144 (341)
Q Consensus 67 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~ 144 (341)
.+.+++.++.|.-.|..+|+.+..+........ ....+. ...... .+ .++.++.+|.+..+|.+..+
T Consensus 63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~--~~~~~~~~g~~~~~-~~--------~V~v~~~~g~v~AlD~~TG~ 131 (488)
T cd00216 63 DMYFTTSHSALFALDAATGKVLWRYDPKLPADR--GCCDVVNRGVAYWD-PR--------KVFFGTFDGRLVALDAETGK 131 (488)
T ss_pred EEEEeCCCCcEEEEECCCChhhceeCCCCCccc--cccccccCCcEEcc-CC--------eEEEecCCCeEEEEECCCCC
Confidence 577888899999999999998877654321000 000000 011111 12 77778888888888765443
Q ss_pred cccccCCceEEEEEeecCCce---EEEEecC--CCCEEEEee---------CCCeEEEEECCCCceeeecCCCCCCccCc
Q 019405 145 VSAESSCSTVKSWNVCASGTI---AFSKVDI--SEKFSLFGG---------KGVEVNVWDLDKCEKIWTAKPPPKNSLGI 210 (341)
Q Consensus 145 ~~~~~~~~~v~~~~~~~~~~i---~~~~~~~--~~~~l~~~~---------~d~~v~i~d~~~~~~~~~~~~~~~~~~~~ 210 (341)
.+|.......+ ..+.-+| .+..++.++ .++.|..+|..+++.++.+..........
T Consensus 132 ----------~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~ 201 (488)
T cd00216 132 ----------QVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAF 201 (488)
T ss_pred ----------EeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCC
Confidence 34443322221 0011111 124444443 36789999999999998876532211110
Q ss_pred cCC-----------eee-eEEEEEecCCCCEEEEEeCCC------------------eEEEEEcCCCCceeEEEEecCCC
Q 019405 211 FTP-----------TWF-TSAAFLSIDDHRKFVAGTNDH------------------QVRLYDTSAQRRPVMSFDFRETP 260 (341)
Q Consensus 211 ~~~-----------~~v-~~~~~~~~~~~~~l~~~~~d~------------------~i~iwd~~~~~~~~~~~~~~~~~ 260 (341)
... ..+ ...++ .+.+.+++.++.++ .|.-+|..+++. +-.++.-...
T Consensus 202 ~~~~~~~~~~~~~g~~vw~~pa~--d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~-~W~~~~~~~~ 278 (488)
T cd00216 202 PTWGPDRQMWGPGGGTSWASPTY--DPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV-KWFYQTTPHD 278 (488)
T ss_pred CCCCCCcceecCCCCCccCCeeE--eCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE-EEEeeCCCCC
Confidence 000 001 12233 34566788877665 788999998875 4333211111
Q ss_pred eE------EEEEc----CCCc---eEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEE---------
Q 019405 261 IK------AVAEE----PDSF---NIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIAS--------- 318 (341)
Q Consensus 261 v~------~~~~~----~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s--------- 318 (341)
.. ...+. -++. .+++++.+|.++.+|.++|+.+...... ...++.+| +..++.
T Consensus 279 ~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~----~~~~~~~~-~~vyv~~~~~~~~~~ 353 (488)
T cd00216 279 LWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV----EQPMAYDP-GLVYLGAFHIPLGLP 353 (488)
T ss_pred CcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee----ccccccCC-ceEEEccccccccCc
Confidence 10 01111 1232 6788889999999999999998766421 11233333 222221
Q ss_pred --------EeCCCcEEEEEcCCCceeee
Q 019405 319 --------CGLDSYLRFWDIKTRQLLSA 338 (341)
Q Consensus 319 --------~~~dg~v~iwd~~~~~~~~~ 338 (341)
...+|.|.-.|+.+|+.+.+
T Consensus 354 ~~~~~~~~~~~~G~l~AlD~~tG~~~W~ 381 (488)
T cd00216 354 PQKKKRCKKPGKGGLAALDPKTGKVVWE 381 (488)
T ss_pred ccccCCCCCCCceEEEEEeCCCCcEeeE
Confidence 12356777788888776654
No 328
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.35 E-value=0.00018 Score=55.80 Aligned_cols=137 Identities=16% Similarity=0.109 Sum_probs=97.8
Q ss_pred CCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEE
Q 019405 174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS 253 (341)
Q Consensus 174 ~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 253 (341)
..+++.|+..+.+..-|..+|...++.... .++.+-+.. -+++++.|+..|.+++.+.+++++ ...
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg----------~RiE~sa~v---vgdfVV~GCy~g~lYfl~~~tGs~-~w~ 88 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG----------VRIECSAIV---VGDFVVLGCYSGGLYFLCVKTGSQ-IWN 88 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhC----------ceeeeeeEE---ECCEEEEEEccCcEEEEEecchhh-eee
Confidence 467788999999999999999988875543 334444442 477899999999999999999875 555
Q ss_pred EEecCCCeE-EEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEE
Q 019405 254 FDFRETPIK-AVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLR 326 (341)
Q Consensus 254 ~~~~~~~v~-~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~ 326 (341)
+..-+ .|. .....+++..+..|+.|+..+..|.++..++.+.+.. .+...+-+..|....|..+...|.|.
T Consensus 89 f~~~~-~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcg-G~~f~sP~i~~g~~sly~a~t~G~vl 160 (354)
T KOG4649|consen 89 FVILE-TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCG-GGTFVSPVIAPGDGSLYAAITAGAVL 160 (354)
T ss_pred eeehh-hhccceEEcCCCceEEEecCCCcEEEecccccceEEecccC-CceeccceecCCCceEEEEeccceEE
Confidence 55432 232 3445678999999999999999999999999887754 44444555666333333344444443
No 329
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.34 E-value=0.0012 Score=55.53 Aligned_cols=227 Identities=15% Similarity=0.159 Sum_probs=130.1
Q ss_pred CeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcc---------c-ceeEEEEeeecc
Q 019405 75 GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT---------K-GKASMRSIEVTK 144 (341)
Q Consensus 75 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~-g~~~i~~~~~~~ 144 (341)
..|++.|..+.+.+..+... ....+.++..+.-..... .....++.|+. . |.+.++.+...+
T Consensus 2 s~i~l~d~~~~~~~~~~~l~-------~~E~~~s~~~~~l~~~~~-~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~ 73 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELE-------PNEHVTSLCSVKLKGDST-GKKEYIVVGTAFNYGEDPEPSSGRILVFEISESP 73 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEE-------TTEEEEEEEEEEETTS----SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-
T ss_pred cEEEEEeCCCCeEEEEEECC-------CCceEEEEEEEEEcCccc-cccCEEEEEecccccccccccCcEEEEEEEEccc
Confidence 46888888888777766652 335566666655332100 01226666643 2 889999887541
Q ss_pred cccccCCce-EEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCc-eeeecCCCCCCccCccCCeeeeEEEEE
Q 019405 145 VSAESSCST-VKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE-KIWTAKPPPKNSLGIFTPTWFTSAAFL 222 (341)
Q Consensus 145 ~~~~~~~~~-v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~ 222 (341)
..+.. ..+......++|.+++.- ++. ++++. ++.|.+|++...+ .......+. +..+.++..
T Consensus 74 ----~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~--------~~~i~sl~~- 137 (321)
T PF03178_consen 74 ----ENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDS--------PFYITSLSV- 137 (321)
T ss_dssp --------EEEEEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-B--------SSSEEEEEE-
T ss_pred ----ccceEEEEEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecc--------eEEEEEEec-
Confidence 01112 233444557888888876 344 44433 4689999998776 332222111 123666666
Q ss_pred ecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEE--ecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCC-------C--e
Q 019405 223 SIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD--FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT-------G--K 291 (341)
Q Consensus 223 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~-------~--~ 291 (341)
.+++++.|.....+.++..+.....+..+. .....++++.+-+++..++++..+|.+.++.... + +
T Consensus 138 ---~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~ 214 (321)
T PF03178_consen 138 ---FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPK 214 (321)
T ss_dssp ---ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTB
T ss_pred ---cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCccccccccc
Confidence 366999999888888886554222133222 2344688888876667899999999999997652 2 3
Q ss_pred EEeEEeccccCceeEE---EecCC--C------CEEEEEeCCCcEEEE
Q 019405 292 LLGCFIGKCSGSIRSI---ARHPT--L------PIIASCGLDSYLRFW 328 (341)
Q Consensus 292 ~~~~~~~~~~~~i~~~---~~~~~--~------~~l~s~~~dg~v~iw 328 (341)
+.....-|....|+++ .+.|. + +.++.++.+|.|...
T Consensus 215 L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 215 LERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred ceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 3333334445678887 55552 2 248888899988743
No 330
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.30 E-value=0.00064 Score=58.21 Aligned_cols=183 Identities=14% Similarity=0.080 Sum_probs=100.9
Q ss_pred eEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEe---cCCC--
Q 019405 153 TVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS---IDDH-- 227 (341)
Q Consensus 153 ~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~-- 227 (341)
+..+.+.. .++|.+++.+ |=.+++.|+.+|.+.|.|++....+..-.... ..........++++.|.. ..|+
T Consensus 78 P~~l~~~~-~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~-~~~~~~~~~~vt~ieF~vm~~~~D~yS 154 (395)
T PF08596_consen 78 PLTLLDAK-QGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRE-SFLSKSSSSYVTSIEFSVMTLGGDGYS 154 (395)
T ss_dssp EEEEE----S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG---T-SS----EEEEEEEEEE-TTSSSE
T ss_pred chhheecc-CCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccc-cccccccccCeeEEEEEEEecCCCccc
Confidence 44555654 7899999997 56799999999999999998877665522111 001111235677787732 2233
Q ss_pred -CEEEEEeCCCeEEEEEcCC-C-Cc----eeEEEEecCCCeEEEE-EcCC-----------------C---ceEEEEeCC
Q 019405 228 -RKFVAGTNDHQVRLYDTSA-Q-RR----PVMSFDFRETPIKAVA-EEPD-----------------S---FNIYIGNGS 279 (341)
Q Consensus 228 -~~l~~~~~d~~i~iwd~~~-~-~~----~~~~~~~~~~~v~~~~-~~~~-----------------~---~~l~~g~~d 279 (341)
-.+++|...|.+.+|.+.- . .. .......+.++|..+. ++.+ + +-+++...+
T Consensus 155 Si~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe 234 (395)
T PF08596_consen 155 SICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSE 234 (395)
T ss_dssp EEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-S
T ss_pred ceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcc
Confidence 4688999999999998752 1 11 1111123555665554 3221 0 123444557
Q ss_pred CCEEEEECCCCeEEeEEeccccCceeEEEec-----CCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 280 GDLASVDIRTGKLLGCFIGKCSGSIRSIARH-----PTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 280 g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
..++++...+.+..++.... .-....+.+- ..+..|++-..+|.|+++.+..-+.+..+
T Consensus 235 ~~irv~~~~~~k~~~K~~~~-~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~ 298 (395)
T PF08596_consen 235 SDIRVFKPPKSKGAHKSFDD-PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSV 298 (395)
T ss_dssp SEEEEE-TT---EEEEE-SS--EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEE
T ss_pred cceEEEeCCCCcccceeecc-ccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcc
Confidence 78999999888776655422 2233334442 35667888899999999999988777654
No 331
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.29 E-value=0.0001 Score=49.63 Aligned_cols=104 Identities=11% Similarity=0.092 Sum_probs=73.7
Q ss_pred ceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcc
Q 019405 52 NCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT 131 (341)
Q Consensus 52 ~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (341)
|++++++.-...-.+.|++|+.|..||||+-+ +.+.++... +.++++..... . .++.+..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~---------~~v~~L~~~~~-~--------~F~Y~l~ 61 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITET---------DKVTSLCSLGG-G--------RFAYALA 61 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecc---------cceEEEEEcCC-C--------EEEEEec
Confidence 44555443222222469999999999999864 455555542 66777776655 2 8999999
Q ss_pred cceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecC---CC-CEEEEeeCCCeEE
Q 019405 132 KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI---SE-KFSLFGGKGVEVN 187 (341)
Q Consensus 132 ~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~---~~-~~l~~~~~d~~v~ 187 (341)
+|++-+|+- ..++|.......+.++.+.. || ..|++|-.+|.|-
T Consensus 62 NGTVGvY~~------------~~RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 62 NGTVGVYDR------------SQRLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred CCEEEEEeC------------cceeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 999999863 67899999888888877643 33 3688888888764
No 332
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.28 E-value=0.0006 Score=63.86 Aligned_cols=245 Identities=11% Similarity=0.058 Sum_probs=138.5
Q ss_pred CCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEE
Q 019405 50 SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC 129 (341)
Q Consensus 50 ~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (341)
..+..+.|-.+.. -++.+..+|.|.+-|.++.... +-+ .-++.|.++.|.+... .++..
T Consensus 69 ~~i~s~~fl~d~~----~i~v~~~~G~iilvd~et~~~e--ivg-------~vd~GI~aaswS~Dee--------~l~li 127 (1265)
T KOG1920|consen 69 DEIVSVQFLADTN----SICVITALGDIILVDPETLELE--IVG-------NVDNGISAASWSPDEE--------LLALI 127 (1265)
T ss_pred cceEEEEEecccc----eEEEEecCCcEEEEccccccee--eee-------eccCceEEEeecCCCc--------EEEEE
Confidence 3444455544444 5888888999999988765432 212 1236677777776666 77777
Q ss_pred cccceeEEEEeeecccc---------------cccCCceEEEEEeec--------------------CCceEEEEecCCC
Q 019405 130 TTKGKASMRSIEVTKVS---------------AESSCSTVKSWNVCA--------------------SGTIAFSKVDISE 174 (341)
Q Consensus 130 ~~~g~~~i~~~~~~~~~---------------~~~~~~~v~~~~~~~--------------------~~~i~~~~~~~~~ 174 (341)
+..+++.+..-.+.+.. ..+....-..+.... ...=..+.|-.||
T Consensus 128 T~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg 207 (1265)
T KOG1920|consen 128 TGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDG 207 (1265)
T ss_pred eCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCC
Confidence 77777776654433221 000000000111000 0112358899999
Q ss_pred CEEEEe-----eCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEe---CCCeEEEEEcCC
Q 019405 175 KFSLFG-----GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT---NDHQVRLYDTSA 246 (341)
Q Consensus 175 ~~l~~~-----~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~---~d~~i~iwd~~~ 246 (341)
+++++. .....|++||-+ +..-..-... ..--.+++| .|.|.++++-. .|+.|.+|.-+.
T Consensus 208 ~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~---------~~l~~~LsW--kPsgs~iA~iq~~~sd~~IvffErNG 275 (1265)
T KOG1920|consen 208 EYFAVSFVESETGTRKIRVYDRE-GALNSTSEPV---------EGLQHSLSW--KPSGSLIAAIQCKTSDSDIVFFERNG 275 (1265)
T ss_pred cEEEEEEEeccCCceeEEEeccc-chhhcccCcc---------cccccceee--cCCCCeEeeeeecCCCCcEEEEecCC
Confidence 999973 223689999976 4332221111 122457899 78899988743 456799998654
Q ss_pred CCce--eEEEEecCCCeEEEEEcCCCceEEE---EeCCCCEEEEECCCCeE--EeEEeccccCceeEEEecCCCC-EEEE
Q 019405 247 QRRP--VMSFDFRETPIKAVAEEPDSFNIYI---GNGSGDLASVDIRTGKL--LGCFIGKCSGSIRSIARHPTLP-IIAS 318 (341)
Q Consensus 247 ~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~---g~~dg~i~iwd~~~~~~--~~~~~~~~~~~i~~~~~~~~~~-~l~s 318 (341)
...- ...+.....++..++|+.++..|++ ......|++|-+.+... ...+... .... +.|+|... .|..
T Consensus 276 L~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~-~~~~--~~W~p~~~~~L~v 352 (1265)
T KOG1920|consen 276 LRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFS-QKAL--LMWDPVTEKTLHV 352 (1265)
T ss_pred ccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecc-cccc--ccccCCCceeEEE
Confidence 2211 1112223345899999999998887 33444599999887643 2233322 1122 77888543 2333
Q ss_pred EeCCCcEEEEEc
Q 019405 319 CGLDSYLRFWDI 330 (341)
Q Consensus 319 ~~~dg~v~iwd~ 330 (341)
-..+|...++|.
T Consensus 353 ~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 353 LRESGQRLVRDF 364 (1265)
T ss_pred EecCCcEEEEEE
Confidence 335665555443
No 333
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.23 E-value=1.4e-06 Score=78.06 Aligned_cols=155 Identities=17% Similarity=0.152 Sum_probs=107.4
Q ss_pred CCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCC--eE
Q 019405 162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH--QV 239 (341)
Q Consensus 162 ~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~--~i 239 (341)
....+|++|+.+.+.|+.|+..|.|++|++.+|........|. ..++-+.- +.+|..+++.+.-. ..
T Consensus 1101 ~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~---------SavT~veP--s~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1101 TALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQ---------SAVTLVEP--SVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred ccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccc---------cccccccc--cCCcceeeeeccccCchH
Confidence 3568899999999999999999999999999998877777654 44666554 67888777655433 46
Q ss_pred EEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEecc---ccCceeEEEecCCCCEE
Q 019405 240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK---CSGSIRSIARHPTLPII 316 (341)
Q Consensus 240 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l 316 (341)
.+|++...-.+.+++.. -.++.|+...+.-+.|.......+||++++..+.++-.. ....-+...|+|+..++
T Consensus 1170 aLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LI 1245 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLI 1245 (1516)
T ss_pred HHhccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceE
Confidence 79998875455666653 357888876656666777778999999998776653211 01122556677776655
Q ss_pred EEEeCCCcEEEEEcCCCcee
Q 019405 317 ASCGLDSYLRFWDIKTRQLL 336 (341)
Q Consensus 317 ~s~~~dg~v~iwd~~~~~~~ 336 (341)
+ .|| .+||++..+.+
T Consensus 1246 l---ndG--vLWDvR~~~aI 1260 (1516)
T KOG1832|consen 1246 L---NDG--VLWDVRIPEAI 1260 (1516)
T ss_pred e---eCc--eeeeeccHHHH
Confidence 4 333 35666554433
No 334
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.19 E-value=0.0013 Score=58.48 Aligned_cols=94 Identities=16% Similarity=0.042 Sum_probs=62.9
Q ss_pred CCeEEEEECCC-----CceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEe-CCCeEEEEEcCCCCc-------
Q 019405 183 GVEVNVWDLDK-----CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-NDHQVRLYDTSAQRR------- 249 (341)
Q Consensus 183 d~~v~i~d~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~------- 249 (341)
++.|.+.|..+ .+.+..+... .....+.+ +||++++++++ .+.+|.++|+.+.+.
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPVG----------KsPHGV~v--SPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~ 362 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPVP----------KNPHGVNT--SPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIK 362 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEECC----------CCccceEE--CCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCC
Confidence 34567777665 2333333322 33667888 89999887765 488999999987442
Q ss_pred ----eeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCC
Q 019405 250 ----PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT 289 (341)
Q Consensus 250 ----~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~ 289 (341)
.+........+ ...+|.++|....+-.-|..|..||+..
T Consensus 363 ~~~~vvaevevGlGP-LHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 363 PRDAVVAEPELGLGP-LHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ccceEEEeeccCCCc-ceEEECCCCCEEEeEeecceeEEEehHH
Confidence 12222223333 3567899998777888899999999875
No 335
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.18 E-value=0.003 Score=54.95 Aligned_cols=221 Identities=10% Similarity=0.040 Sum_probs=114.6
Q ss_pred CCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccccccccee
Q 019405 47 DPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL 126 (341)
Q Consensus 47 ~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 126 (341)
........+.++|+++ ++++ +.||.-.|+.....+.... +.-...+|.. .+ .+
T Consensus 30 ~~~~~p~~ls~npngr----~v~V-~g~geY~iyt~~~~r~k~~-------------G~g~~~vw~~-~n--------~y 82 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGR----FVLV-CGDGEYEIYTALAWRNKAF-------------GSGLSFVWSS-RN--------RY 82 (443)
T ss_dssp E-SS--SEEEE-TTSS----EEEE-EETTEEEEEETTTTEEEEE-------------EE-SEEEE-T-SS--------EE
T ss_pred CCCcCCeeEEECCCCC----EEEE-EcCCEEEEEEccCCccccc-------------CceeEEEEec-Cc--------cE
Confidence 3444456677776666 6666 5588988888432222111 2233445544 33 66
Q ss_pred EEEcccceeEEE-EeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCC
Q 019405 127 LTCTTKGKASMR-SIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPK 205 (341)
Q Consensus 127 ~~~~~~g~~~i~-~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~ 205 (341)
++-..++.+.|+ ++.... ++..... ..+..+- + |.+|...+.+ .|.+||+.+++.+..+...
T Consensus 83 Av~~~~~~I~I~kn~~~~~---------~k~i~~~--~~~~~If--~-G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~-- 145 (443)
T PF04053_consen 83 AVLESSSTIKIYKNFKNEV---------VKSIKLP--FSVEKIF--G-GNLLGVKSSD-FICFYDWETGKLIRRIDVS-- 145 (443)
T ss_dssp EEE-TTS-EEEEETTEE-T---------T-----S--S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---
T ss_pred EEEECCCeEEEEEcCcccc---------ceEEcCC--cccceEE--c-CcEEEEECCC-CEEEEEhhHcceeeEEecC--
Confidence 666667788875 332111 1111111 1122222 2 7777776655 8999999999999988853
Q ss_pred CccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCC----------CceeEEEEecCCCeEEEEEcCCCceEEE
Q 019405 206 NSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ----------RRPVMSFDFRETPIKAVAEEPDSFNIYI 275 (341)
Q Consensus 206 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 275 (341)
.|..+.| ++++++++..+.+ .+.+++.... +.....+..-...|.+..|..+ -++++
T Consensus 146 ---------~vk~V~W--s~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYt 212 (443)
T PF04053_consen 146 ---------AVKYVIW--SDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYT 212 (443)
T ss_dssp ---------E-EEEEE---TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE
T ss_pred ---------CCcEEEE--ECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEE
Confidence 3788999 8999999988755 6777775532 0124444443568899999766 34444
Q ss_pred EeCCCCEEEEECCCCeE--EeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405 276 GNGSGDLASVDIRTGKL--LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (341)
Q Consensus 276 g~~dg~i~iwd~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 332 (341)
... .|+. +..|+. +..+ ..+++=+...|..+.+.....|+.|..+.+..
T Consensus 213 T~~--~lkY--l~~Ge~~~i~~l----d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 213 TSN--HLKY--LVNGETGIIAHL----DKPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp -TT--EEEE--EETTEEEEEEE-----SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred cCC--eEEE--EEcCCcceEEEc----CCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 332 6666 333433 3323 45677788888778888888898888887653
No 336
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.17 E-value=0.0026 Score=52.21 Aligned_cols=231 Identities=14% Similarity=0.117 Sum_probs=125.2
Q ss_pred CceEEEEccCCeEEEeeCCC-CcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeec
Q 019405 65 DPLLAVARKNGLTDILNPLN-GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT 143 (341)
Q Consensus 65 ~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~ 143 (341)
++.|+.|+.+| |.+++... .+....... ..+..+...+..+ .++.-+ |+.+.++++..-
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~----------~~I~ql~vl~~~~--------~llvLs-d~~l~~~~L~~l 66 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSKPTRILKL----------SSITQLSVLPELN--------LLLVLS-DGQLYVYDLDSL 66 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCccceeEeec----------ceEEEEEEecccC--------EEEEEc-CCccEEEEchhh
Confidence 45799999888 89999833 233222222 3477777777655 444443 599999997654
Q ss_pred ccccccCCce-----EEEEEeecCCceEEEE--ecCCCCEEEEeeCCCeEEEEECCCC-----ceeeecCCCCCCccCcc
Q 019405 144 KVSAESSCST-----VKSWNVCASGTIAFSK--VDISEKFSLFGGKGVEVNVWDLDKC-----EKIWTAKPPPKNSLGIF 211 (341)
Q Consensus 144 ~~~~~~~~~~-----v~~~~~~~~~~i~~~~--~~~~~~~l~~~~~d~~v~i~d~~~~-----~~~~~~~~~~~~~~~~~ 211 (341)
.......... ...........+...+ -...+...++......|.+|..... +...++..+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp-------- 138 (275)
T PF00780_consen 67 EPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP-------- 138 (275)
T ss_pred ccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC--------
Confidence 3222110000 0000111223344444 2223333344444558988887653 233444332
Q ss_pred CCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEe------------cCCCeEEEEEcCCCceEEEEeCC
Q 019405 212 TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF------------RETPIKAVAEEPDSFNIYIGNGS 279 (341)
Q Consensus 212 ~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~l~~g~~d 279 (341)
..+..++|. ++.++.|..+ ...+.|+.++.. ...+.. ...++..+... ++.+|++- +
T Consensus 139 --~~~~~i~~~----~~~i~v~~~~-~f~~idl~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~ 207 (275)
T PF00780_consen 139 --DPPSSIAFL----GNKICVGTSK-GFYLIDLNTGSP-SELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--D 207 (275)
T ss_pred --CCcEEEEEe----CCEEEEEeCC-ceEEEecCCCCc-eEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--c
Confidence 448888993 5677777655 478889886442 211111 11233344443 34555542 3
Q ss_pred CCEEEEECCCCeEEe--EEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeeec
Q 019405 280 GDLASVDIRTGKLLG--CFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVC 340 (341)
Q Consensus 280 g~i~iwd~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 340 (341)
..-.+.|. .|+..+ .+.. .....++++ ..++|+..+.+ .|.||++.++++++++.
T Consensus 208 ~~g~fv~~-~G~~~r~~~i~W--~~~p~~~~~--~~pyli~~~~~-~iEV~~~~~~~lvQ~i~ 264 (275)
T PF00780_consen 208 NIGVFVNK-NGEPSRKSTIQW--SSAPQSVAY--SSPYLIAFSSN-SIEVRSLETGELVQTIP 264 (275)
T ss_pred ceEEEEcC-CCCcCcccEEEc--CCchhEEEE--ECCEEEEECCC-EEEEEECcCCcEEEEEE
Confidence 33333343 444332 3333 235556666 45677777665 59999999999998863
No 337
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=1.6e-05 Score=68.68 Aligned_cols=94 Identities=12% Similarity=0.127 Sum_probs=77.9
Q ss_pred eeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeE-EEEEcCCCceEEEEeCCCCEEEEECCCCeE
Q 019405 214 TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIK-AVAEEPDSFNIYIGNGSGDLASVDIRTGKL 292 (341)
Q Consensus 214 ~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~ 292 (341)
..+..+.| +|.-.++|.+..+|.|-+..+. .++ +.++..+...++ +++|.|||+.|++|-.||+|++.|+.++..
T Consensus 21 ~~i~~~ew--nP~~dLiA~~t~~gelli~R~n-~qR-lwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 21 INIKRIEW--NPKMDLIATRTEKGELLIHRLN-WQR-LWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred cceEEEEE--cCccchhheeccCCcEEEEEec-cce-eEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence 34778889 8889999999999999999888 344 777776777777 999999999999999999999999999988
Q ss_pred EeEEeccccCceeEEEecC
Q 019405 293 LGCFIGKCSGSIRSIARHP 311 (341)
Q Consensus 293 ~~~~~~~~~~~i~~~~~~~ 311 (341)
+..+.......|.++-|.+
T Consensus 97 l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 97 LVSFLFSVETDISKGIWDR 115 (665)
T ss_pred eeccccccccchheeeccc
Confidence 8774332356788888863
No 338
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.11 E-value=2.8e-05 Score=68.10 Aligned_cols=115 Identities=7% Similarity=0.003 Sum_probs=88.1
Q ss_pred eeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeE---
Q 019405 216 FTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL--- 292 (341)
Q Consensus 216 v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~--- 292 (341)
+.--++ +..+++++.|+.-|.+++|+...++.......+....+..+..+++..++|+|+..|.|.++-+....+
T Consensus 36 v~lTc~--dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~ 113 (726)
T KOG3621|consen 36 VKLTCV--DATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL 113 (726)
T ss_pred EEEEEe--ecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc
Confidence 443344 568899999999999999998876543333333555667778899999999999999999998775422
Q ss_pred E--eEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405 293 L--GCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (341)
Q Consensus 293 ~--~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 332 (341)
+ ..+...|...|++++|++++..+.+|..-|.|..-.+.+
T Consensus 114 ~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 114 DYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred eeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 1 222222378999999999999999999999999888876
No 339
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.09 E-value=7.2e-07 Score=76.89 Aligned_cols=188 Identities=18% Similarity=0.204 Sum_probs=117.9
Q ss_pred eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecC-CCCEEEEeeC----CCeEEEEECCCCc--ee
Q 019405 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGK----GVEVNVWDLDKCE--KI 197 (341)
Q Consensus 125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~-~~~~l~~~~~----d~~v~i~d~~~~~--~~ 197 (341)
.+.+|..+|.+.+-.+...... -..+-..+....++++|++ |.+.||.|-. |..+.|||+.++- +.
T Consensus 72 IlavG~atG~I~l~s~r~~hdS-------s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPk 144 (783)
T KOG1008|consen 72 ILAVGSATGNISLLSVRHPHDS-------SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPK 144 (783)
T ss_pred hhhhccccCceEEeecCCcccc-------cceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCc
Confidence 7788888899988877644321 0112223345788999987 4566776532 4569999998751 11
Q ss_pred --eecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcC-CCceEE
Q 019405 198 --WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEP-DSFNIY 274 (341)
Q Consensus 198 --~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~ 274 (341)
..+... ......+++| -.+.+++++|...+.+.++|++........+ ....+..+...| .+.+++
T Consensus 145 e~~~fs~~--------~l~gqns~cw--lrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~c 212 (783)
T KOG1008|consen 145 ESPLFSSS--------TLDGQNSVCW--LRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFC 212 (783)
T ss_pred cccccccc--------cccCcccccc--ccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCcee
Confidence 111110 1133557888 6788899999999999999999532112222 334566778888 556766
Q ss_pred EEeCCCCEEEEE-CCCCeE-EeEEecc---ccCceeEEEecCCCC-EEEEEeCC-CcEEEEEcCC
Q 019405 275 IGNGSGDLASVD-IRTGKL-LGCFIGK---CSGSIRSIARHPTLP-IIASCGLD-SYLRFWDIKT 332 (341)
Q Consensus 275 ~g~~dg~i~iwd-~~~~~~-~~~~~~~---~~~~i~~~~~~~~~~-~l~s~~~d-g~v~iwd~~~ 332 (341)
+ ..||.|.+|| .++-+. +..+... ....+..++|.|... .+++...| ++|+++|+..
T Consensus 213 s-~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 213 S-NSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred c-cccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 5 4599999999 443322 2222111 123489999999665 55555544 6899998753
No 340
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.06 E-value=0.00039 Score=62.71 Aligned_cols=105 Identities=15% Similarity=0.148 Sum_probs=74.3
Q ss_pred CCCCCceEEEEc----cCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeE
Q 019405 61 DSQNDPLLAVAR----KNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKAS 136 (341)
Q Consensus 61 ~~~~~~~l~~~~----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 136 (341)
++|..+++++++ ..|.|.||- ++|++....... -.+.+++|.+..- .|+.+=.-|.+.
T Consensus 23 WHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P---------~hatSLCWHpe~~--------vLa~gwe~g~~~ 84 (1416)
T KOG3617|consen 23 WHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYP---------VHATSLCWHPEEF--------VLAQGWEMGVSD 84 (1416)
T ss_pred cCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccc---------eehhhhccChHHH--------HHhhccccceeE
Confidence 455556777765 358888884 356554433221 2345577777665 777777788899
Q ss_pred EEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECC
Q 019405 137 MRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLD 192 (341)
Q Consensus 137 i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~ 192 (341)
+|..... ........|..+|..+.|+++|..++++..-|.|.+|...
T Consensus 85 v~~~~~~---------e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 85 VQKTNTT---------ETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred EEecCCc---------eeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 9976432 3344455678899999999999999999999999999876
No 341
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.05 E-value=1.6e-06 Score=74.83 Aligned_cols=202 Identities=13% Similarity=0.078 Sum_probs=122.5
Q ss_pred CceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcch-heeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEE
Q 019405 51 SNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR-VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC 129 (341)
Q Consensus 51 ~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (341)
.+.|++...+.. ..++++|..+|.|.+-......-- .++.. ++....++++|.+.+.+ .|++|
T Consensus 58 y~kcva~~y~~d--~cIlavG~atG~I~l~s~r~~hdSs~E~tp-------~~ar~Ct~lAwneLDtn-------~LAag 121 (783)
T KOG1008|consen 58 YVKCVASFYGND--RCILAVGSATGNISLLSVRHPHDSSAEVTP-------GYARPCTSLAWNELDTN-------HLAAG 121 (783)
T ss_pred CceeehhhcCCc--hhhhhhccccCceEEeecCCcccccceecc-------cccccccccccccccHH-------HHHhh
Confidence 344555444433 336899999999999877543221 11111 34466777777766542 55555
Q ss_pred cc----cceeEEEEeeecccccccCCceEEEEEe--ecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCC-ceeeecCC
Q 019405 130 TT----KGKASMRSIEVTKVSAESSCSTVKSWNV--CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC-EKIWTAKP 202 (341)
Q Consensus 130 ~~----~g~~~i~~~~~~~~~~~~~~~~v~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~-~~~~~~~~ 202 (341)
-. +..+.||++...-.. +...|.. .......+++|..+.+++.+|.....++++|++.. .....+..
T Consensus 122 ldkhrnds~~~Iwdi~s~ltv------Pke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnT 195 (783)
T KOG1008|consen 122 LDKHRNDSSLKIWDINSLLTV------PKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNT 195 (783)
T ss_pred hhhhcccCCccceecccccCC------CccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhh
Confidence 33 466789998654110 1111111 12234457778888889999999989999999842 12222221
Q ss_pred CCCCccCccCCeeeeEEEEEecC-CCCEEEEEeCCCeEEEEE-cCCCCceeEEEEecCC----CeEEEEEcCCC-ceEEE
Q 019405 203 PPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQVRLYD-TSAQRRPVMSFDFRET----PIKAVAEEPDS-FNIYI 275 (341)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~~~----~v~~~~~~~~~-~~l~~ 275 (341)
..+..+.. .| .++++++-. |+.|.+|| .++-+.+++.+...+. .+..++|+|.. .++++
T Consensus 196 -----------k~vqG~tV--dp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~ 261 (783)
T KOG1008|consen 196 -----------KYVQGITV--DPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAV 261 (783)
T ss_pred -----------hhccccee--cCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhh
Confidence 22555566 55 677877755 99999999 5555555555443333 48899999943 34444
Q ss_pred Ee-CCCCEEEEECC
Q 019405 276 GN-GSGDLASVDIR 288 (341)
Q Consensus 276 g~-~dg~i~iwd~~ 288 (341)
.. ..++|+++|+.
T Consensus 262 l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 262 LSRDSITIRLYDIC 275 (783)
T ss_pred hccCcceEEEeccc
Confidence 44 45889999976
No 342
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.03 E-value=0.0073 Score=52.45 Aligned_cols=208 Identities=16% Similarity=0.091 Sum_probs=104.5
Q ss_pred eEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEE
Q 019405 76 LTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVK 155 (341)
Q Consensus 76 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~ 155 (341)
.|+||+. .|+.+.++.-. . +.++++.|... . .|+....+|.++++++.... .-.....+.
T Consensus 62 ~I~iys~-sG~ll~~i~w~-------~-~~iv~~~wt~~-e--------~LvvV~~dG~v~vy~~~G~~--~fsl~~~i~ 121 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWD-------S-GRIVGMGWTDD-E--------ELVVVQSDGTVRVYDLFGEF--QFSLGEEIE 121 (410)
T ss_pred EEEEECC-CCCEeEEEEEC-------C-CCEEEEEECCC-C--------eEEEEEcCCEEEEEeCCCce--eechhhhcc
Confidence 5999987 57777766541 2 78888888663 3 67788899999999874221 000000111
Q ss_pred EEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEE-CCCCceeeecCCCCCCccCccCCeeeeE-EEEEecCCCCEEEEE
Q 019405 156 SWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWD-LDKCEKIWTAKPPPKNSLGIFTPTWFTS-AAFLSIDDHRKFVAG 233 (341)
Q Consensus 156 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d-~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~l~~~ 233 (341)
...+ ....+....+..+|-.++ ..++.+.+.+ .........+.................. ..+ ..+....+..
T Consensus 122 ~~~v-~e~~i~~~~~~~~GivvL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l--~~~~~~~i~~ 196 (410)
T PF04841_consen 122 EEKV-LECRIFAIWFYKNGIVVL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLL--SSDRVVEILL 196 (410)
T ss_pred ccCc-ccccccccccCCCCEEEE--CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEe--ecCcceEEEE
Confidence 1111 011122223333443333 3344444432 2211111111110000000000000111 122 3344444444
Q ss_pred eCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCC
Q 019405 234 TNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL 313 (341)
Q Consensus 234 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~ 313 (341)
..++.+.+.+-...+ .+. ..+++..++.||+++++|.-..+|.+.+.+..-.+.+..+..........|.|.-+.
T Consensus 197 ~~g~~i~~i~~~~~~----~i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 197 ANGETIYIIDENSFK----QID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred ecCCEEEEEEccccc----ccc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence 555566644433211 122 235899999999999999999999999988765555555544323456667776544
No 343
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.03 E-value=0.0022 Score=52.73 Aligned_cols=215 Identities=15% Similarity=0.137 Sum_probs=116.2
Q ss_pred EEEeccCCCCCceEEE--EccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEccc
Q 019405 55 LAASIDDSQNDPLLAV--ARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK 132 (341)
Q Consensus 55 ~~~s~~~~~~~~~l~~--~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 132 (341)
.+++.|++ ++++ .+--..|.|-|+..++.+.++.. .-|...++..+. .+.+-+.|
T Consensus 100 ~~ls~dgk----~~~V~N~TPa~SVtVVDl~~~kvv~ei~~------------PGC~~iyP~~~~-------~F~~lC~D 156 (342)
T PF06433_consen 100 FALSADGK----FLYVQNFTPATSVTVVDLAAKKVVGEIDT------------PGCWLIYPSGNR-------GFSMLCGD 156 (342)
T ss_dssp EEE-TTSS----EEEEEEESSSEEEEEEETTTTEEEEEEEG------------TSEEEEEEEETT-------EEEEEETT
T ss_pred eEEccCCc----EEEEEccCCCCeEEEEECCCCceeeeecC------------CCEEEEEecCCC-------ceEEEecC
Confidence 44555554 5544 34456677777777777766654 224445554432 68888889
Q ss_pred ceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeee--cCCCC-CCccC
Q 019405 133 GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT--AKPPP-KNSLG 209 (341)
Q Consensus 133 g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~--~~~~~-~~~~~ 209 (341)
|.+.-..++...... ...-.+|+......+..-++...+..++--+.+|.|+--|+........ ..... ...-.
T Consensus 157 Gsl~~v~Ld~~Gk~~---~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~ 233 (342)
T PF06433_consen 157 GSLLTVTLDADGKEA---QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKAD 233 (342)
T ss_dssp SCEEEEEETSTSSEE---EEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHT
T ss_pred CceEEEEECCCCCEe---EeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCcccccc
Confidence 999888876433221 0011244433222222334455555566578889999888875442211 11000 00000
Q ss_pred ccCCeeeeEEEEEecCCCCEEEEEeC---CC-------eEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCc-eEEEE-e
Q 019405 210 IFTPTWFTSAAFLSIDDHRKFVAGTN---DH-------QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSF-NIYIG-N 277 (341)
Q Consensus 210 ~~~~~~v~~~~~~~~~~~~~l~~~~~---d~-------~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~g-~ 277 (341)
---++.-.-+++ ++..++|.+--. ++ .|-++|+.+.++ +..+... .++.++..+.+.+ +|++. .
T Consensus 234 ~WrPGG~Q~~A~--~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~kr-v~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~ 309 (342)
T PF06433_consen 234 GWRPGGWQLIAY--HAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKR-VARIPLE-HPIDSIAVSQDDKPLLYALSA 309 (342)
T ss_dssp TEEE-SSS-EEE--ETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEE-EEEEEEE-EEESEEEEESSSS-EEEEEET
T ss_pred CcCCcceeeeee--ccccCeEEEEecCCCCCCccCCceEEEEEECCCCeE-EEEEeCC-CccceEEEccCCCcEEEEEcC
Confidence 001233445677 344444443211 11 477888888776 6666542 3677999988764 55544 4
Q ss_pred CCCCEEEEECCCCeEEeEEecc
Q 019405 278 GSGDLASVDIRTGKLLGCFIGK 299 (341)
Q Consensus 278 ~dg~i~iwd~~~~~~~~~~~~~ 299 (341)
.++.+.+||..+|++++++..-
T Consensus 310 ~~~~l~v~D~~tGk~~~~~~~l 331 (342)
T PF06433_consen 310 GDGTLDVYDAATGKLVRSIEQL 331 (342)
T ss_dssp TTTEEEEEETTT--EEEEE---
T ss_pred CCCeEEEEeCcCCcEEeehhcc
Confidence 5789999999999999988754
No 344
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=3.4e-05 Score=66.84 Aligned_cols=78 Identities=18% Similarity=0.140 Sum_probs=69.5
Q ss_pred CCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCcee-EEEecCCCCEEEEEeCCCcEEEEEcCCCceee
Q 019405 259 TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIR-SIARHPTLPIIASCGLDSYLRFWDIKTRQLLS 337 (341)
Q Consensus 259 ~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 337 (341)
..+..+.|+|.-.++|.+..+|.|-+..+. .+.+.+++-+ ...++ +++|.|||+.||.|=.||+|++.|+.++..+.
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p-~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIP-GENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCC-CCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 357789999999999999999999999887 8888889876 55666 99999999999999999999999999988776
Q ss_pred e
Q 019405 338 A 338 (341)
Q Consensus 338 ~ 338 (341)
.
T Consensus 99 ~ 99 (665)
T KOG4640|consen 99 S 99 (665)
T ss_pred c
Confidence 5
No 345
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.01 E-value=0.0014 Score=55.07 Aligned_cols=144 Identities=10% Similarity=0.105 Sum_probs=88.3
Q ss_pred CCEEEEeeC----------CCeEEEEECCCC----ceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeE
Q 019405 174 EKFSLFGGK----------GVEVNVWDLDKC----EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239 (341)
Q Consensus 174 ~~~l~~~~~----------d~~v~i~d~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i 239 (341)
..++++|+. .|.|.++++... ..+..+.... .+++|++++-. ++ +|+++. ++.|
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~-------~~g~V~ai~~~---~~-~lv~~~-g~~l 109 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTE-------VKGPVTAICSF---NG-RLVVAV-GNKL 109 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEE-------ESS-EEEEEEE---TT-EEEEEE-TTEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEe-------ecCcceEhhhh---CC-EEEEee-cCEE
Confidence 467776643 288999999874 1222221111 13568888773 44 455443 5799
Q ss_pred EEEEcCCCCceeEEEEec--CCCeEEEEEcCCCceEEEEeCCCCEEEEECCC-Ce-EEeEEeccccCceeEEEecCCCCE
Q 019405 240 RLYDTSAQRRPVMSFDFR--ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT-GK-LLGCFIGKCSGSIRSIARHPTLPI 315 (341)
Q Consensus 240 ~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~-~~-~~~~~~~~~~~~i~~~~~~~~~~~ 315 (341)
.+|++...+. +.....+ ...+.++... +.++++|..-..+.++..+. .+ +...-+......++++.|-+++..
T Consensus 110 ~v~~l~~~~~-l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~ 186 (321)
T PF03178_consen 110 YVYDLDNSKT-LLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDT 186 (321)
T ss_dssp EEEEEETTSS-EEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSE
T ss_pred EEEEccCccc-chhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcE
Confidence 9999998662 2222222 2355555554 55999999888888874432 33 332222222457889999866679
Q ss_pred EEEEeCCCcEEEEEcCC
Q 019405 316 IASCGLDSYLRFWDIKT 332 (341)
Q Consensus 316 l~s~~~dg~v~iwd~~~ 332 (341)
++.+..+|.+.++....
T Consensus 187 ~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 187 IIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEEEETTSEEEEEEE-S
T ss_pred EEEEcCCCeEEEEEECC
Confidence 99999999999998863
No 346
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=4.1e-05 Score=62.69 Aligned_cols=85 Identities=15% Similarity=0.165 Sum_probs=67.4
Q ss_pred cCCceEEEEecCCCC-EEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeE
Q 019405 161 ASGTIAFSKVDISEK-FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239 (341)
Q Consensus 161 ~~~~i~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i 239 (341)
++..|..++|+|..+ ++..++.++.|+|.|+++...+..+..+ ..+.+++|. -.+.+++..|-.+|.|
T Consensus 192 ~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~----------~~~wSC~wD-lde~h~IYaGl~nG~V 260 (463)
T KOG1645|consen 192 EGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY----------NQIWSCCWD-LDERHVIYAGLQNGMV 260 (463)
T ss_pred cchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc----------CCceeeeec-cCCcceeEEeccCceE
Confidence 456789999999877 7888999999999999998777766654 348899995 3446788899999999
Q ss_pred EEEEcCCCCceeEEEEe
Q 019405 240 RLYDTSAQRRPVMSFDF 256 (341)
Q Consensus 240 ~iwd~~~~~~~~~~~~~ 256 (341)
.+||++..+.++..+..
T Consensus 261 lvyD~R~~~~~~~e~~a 277 (463)
T KOG1645|consen 261 LVYDMRQPEGPLMELVA 277 (463)
T ss_pred EEEEccCCCchHhhhhh
Confidence 99999987655554443
No 347
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.99 E-value=0.0019 Score=56.22 Aligned_cols=140 Identities=10% Similarity=0.059 Sum_probs=80.2
Q ss_pred ceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEE
Q 019405 164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD 243 (341)
Q Consensus 164 ~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd 243 (341)
....+.++|++++++++ .+|.-.+|.....+.... +.....+| .+ .+.+|+-..+++|.++.
T Consensus 34 ~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~~--------------G~g~~~vw--~~-~n~yAv~~~~~~I~I~k 95 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKAF--------------GSGLSFVW--SS-RNRYAVLESSSTIKIYK 95 (443)
T ss_dssp --SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEEE--------------EE-SEEEE---T-SSEEEEE-TTS-EEEEE
T ss_pred CCeeEEECCCCCEEEEE-cCCEEEEEEccCCccccc--------------CceeEEEE--ec-CccEEEEECCCeEEEEE
Confidence 46789999999999985 456777887433222211 22455678 55 44577777788999973
Q ss_pred cCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCC
Q 019405 244 TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDS 323 (341)
Q Consensus 244 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg 323 (341)
--+.+. ...++.. ..+..+-. |.+|...+.+ .|.+||..+++.+.++... +|..+.|++++.+++..+.+
T Consensus 96 n~~~~~-~k~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~---~vk~V~Ws~~g~~val~t~~- 165 (443)
T PF04053_consen 96 NFKNEV-VKSIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS---AVKYVIWSDDGELVALVTKD- 165 (443)
T ss_dssp TTEE-T-T-----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS----E-EEEEE-TTSSEEEEE-S--
T ss_pred cCcccc-ceEEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC---CCcEEEEECCCCEEEEEeCC-
Confidence 222121 2333322 23344432 7777776554 8999999999999999753 48999999999999999866
Q ss_pred cEEEEEcC
Q 019405 324 YLRFWDIK 331 (341)
Q Consensus 324 ~v~iwd~~ 331 (341)
.+.|++.+
T Consensus 166 ~i~il~~~ 173 (443)
T PF04053_consen 166 SIYILKYN 173 (443)
T ss_dssp SEEEEEE-
T ss_pred eEEEEEec
Confidence 57776644
No 348
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.98 E-value=0.00033 Score=64.34 Aligned_cols=145 Identities=14% Similarity=0.120 Sum_probs=96.4
Q ss_pred CCCEEEEe-eCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecC-----CCCEEEEEeCCCeEEEEEcCC
Q 019405 173 SEKFSLFG-GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID-----DHRKFVAGTNDHQVRLYDTSA 246 (341)
Q Consensus 173 ~~~~l~~~-~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~l~~~~~d~~i~iwd~~~ 246 (341)
+.++|+.- ...+.|+-.|++.|+.+.....+... .|. .+.|.. .......|-.+..+..||.|-
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~--------~v~--~~~p~~K~aqlt~e~tflGls~n~lfriDpR~ 561 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDI--------PVV--DIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRL 561 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCc--------cee--EecccccccccCCCceEEEECCCceEEeccCC
Confidence 33444443 34578999999999999888776532 122 231111 233456677788999999986
Q ss_pred CCceeEEEEe----cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCC
Q 019405 247 QRRPVMSFDF----RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLD 322 (341)
Q Consensus 247 ~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d 322 (341)
....+..-.. ......|++-+.+| +||+|+.+|.||+||--..+....+++- ..+|.+|..+.||++|++.+..
T Consensus 562 ~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~l-G~pI~~iDvt~DGkwilaTc~t 639 (794)
T PF08553_consen 562 SGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGL-GDPIIGIDVTADGKWILATCKT 639 (794)
T ss_pred CCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCC-CCCeeEEEecCCCcEEEEeecc
Confidence 4322221111 23456777777777 8999999999999995332333445565 7899999999999988777554
Q ss_pred CcEEEEEc
Q 019405 323 SYLRFWDI 330 (341)
Q Consensus 323 g~v~iwd~ 330 (341)
.+.+++.
T Consensus 640 -yLlLi~t 646 (794)
T PF08553_consen 640 -YLLLIDT 646 (794)
T ss_pred -eEEEEEE
Confidence 6777765
No 349
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.98 E-value=3.1e-05 Score=41.57 Aligned_cols=39 Identities=33% Similarity=0.623 Sum_probs=34.1
Q ss_pred CeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEE
Q 019405 290 GKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWD 329 (341)
Q Consensus 290 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd 329 (341)
++++..+..| ...|.++.|++++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGH-TGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEec-CCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4566677776 78999999999999999999999999996
No 350
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.93 E-value=0.0065 Score=48.42 Aligned_cols=199 Identities=13% Similarity=0.149 Sum_probs=106.8
Q ss_pred CceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCC
Q 019405 104 DGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKG 183 (341)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 183 (341)
+.+.++.+.+..+. .+++....+.+...+.+ ...++.+....-+..-.+++..++.++++--.+
T Consensus 22 ~e~SGLTy~pd~~t-------LfaV~d~~~~i~els~~---------G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~ 85 (248)
T PF06977_consen 22 DELSGLTYNPDTGT-------LFAVQDEPGEIYELSLD---------GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERD 85 (248)
T ss_dssp S-EEEEEEETTTTE-------EEEEETTTTEEEEEETT-----------EEEEEE-SS-SSEEEEEE-STTEEEEEETTT
T ss_pred CCccccEEcCCCCe-------EEEEECCCCEEEEEcCC---------CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCC
Confidence 45778888776552 55555555665544431 124566665555677888888888777766668
Q ss_pred CeEEEEECCCCc------eeeec--CCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCC--CCceeEE
Q 019405 184 VEVNVWDLDKCE------KIWTA--KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA--QRRPVMS 253 (341)
Q Consensus 184 ~~v~i~d~~~~~------~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~--~~~~~~~ 253 (341)
+.+.++++.... ....+ ..... +...+..++| ++.++.|+.+-...-..+|.+.. ....+..
T Consensus 86 ~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~------~N~G~EGla~--D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~ 157 (248)
T PF06977_consen 86 QRLYIFTIDDDTTSLDRADVQKISLGFPNK------GNKGFEGLAY--DPKTNRLFVAKERKPKRLYEVNGFPGGFDLFV 157 (248)
T ss_dssp TEEEEEEE----TT--EEEEEEEE---S---------SS--EEEEE--ETTTTEEEEEEESSSEEEEEEESTT-SS--EE
T ss_pred CcEEEEEEeccccccchhhceEEecccccC------CCcceEEEEE--cCCCCEEEEEeCCCChhhEEEccccCccceee
Confidence 899999884321 11111 11111 2245889999 78777777777777777777654 1111211
Q ss_pred EE--------ecCCCeEEEEEcCCC-ceEEEEeCCCCEEEEECCCCeEEeEEecc---c-----cCceeEEEecCCCCEE
Q 019405 254 FD--------FRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLLGCFIGK---C-----SGSIRSIARHPTLPII 316 (341)
Q Consensus 254 ~~--------~~~~~v~~~~~~~~~-~~l~~g~~dg~i~iwd~~~~~~~~~~~~~---~-----~~~i~~~~~~~~~~~l 316 (341)
.. .....+.+++++|.. ++++....+..|..+| .+|+.+..+.-. + -..--.|+|.++|++.
T Consensus 158 ~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LY 236 (248)
T PF06977_consen 158 SDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLY 236 (248)
T ss_dssp EE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EE
T ss_pred ccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEE
Confidence 11 122357889999854 6667777788899999 567776655422 0 1246789999999665
Q ss_pred EEEeCCCcEEEE
Q 019405 317 ASCGLDSYLRFW 328 (341)
Q Consensus 317 ~s~~~dg~v~iw 328 (341)
+++ +-+..++|
T Consensus 237 Ivs-EpNlfy~f 247 (248)
T PF06977_consen 237 IVS-EPNLFYRF 247 (248)
T ss_dssp EEE-TTTEEEEE
T ss_pred EEc-CCceEEEe
Confidence 554 54444443
No 351
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.92 E-value=0.00018 Score=63.28 Aligned_cols=117 Identities=13% Similarity=0.228 Sum_probs=83.9
Q ss_pred CceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEE
Q 019405 163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY 242 (341)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iw 242 (341)
..+.--+++..+++++.|+.-|.+++|+-..++.. ..+.... ...+..+.. +++..++|.|+..|.|.++
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~-~~~~~~~-------~~~~~~~~v--s~~e~lvAagt~~g~V~v~ 103 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMR-KLKNEGA-------TGITCVRSV--SSVEYLVAAGTASGRVSVF 103 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCchhhh-cccccCc-------cceEEEEEe--cchhHhhhhhcCCceEEee
Confidence 34444455667899999999999999997655433 2332211 122333444 7888899999999999999
Q ss_pred EcCCCCceeEEE-----EecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCC
Q 019405 243 DTSAQRRPVMSF-----DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT 289 (341)
Q Consensus 243 d~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~ 289 (341)
-+.....+-..+ +.|...|++++|++++..+++|...|.|.+-.+..
T Consensus 104 ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 104 QLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred hhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 887633222222 12677899999999999999999999999887766
No 352
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.87 E-value=2.5e-05 Score=59.27 Aligned_cols=107 Identities=18% Similarity=0.227 Sum_probs=74.7
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEE-EEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCce
Q 019405 226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKA-VAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSI 304 (341)
Q Consensus 226 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i 304 (341)
-+..+++|+.+|.|++|...........+......|-+ +.--.++.+..+++.||.|+.|++.-.+.+.....|...++
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~ 148 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESG 148 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCc
Confidence 45688999999999999877322211111222223332 22233556888999999999999998888776666622677
Q ss_pred eEEEecCCCCEEEEE--eCCCcEEEEEcCC
Q 019405 305 RSIARHPTLPIIASC--GLDSYLRFWDIKT 332 (341)
Q Consensus 305 ~~~~~~~~~~~l~s~--~~dg~v~iwd~~~ 332 (341)
..+..+..+++++.+ |.|..++.|++..
T Consensus 149 e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 149 EELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ceeEEecCCceEEeeccccchhhhhcchhh
Confidence 777777778888888 8888899998865
No 353
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.82 E-value=0.017 Score=49.69 Aligned_cols=81 Identities=11% Similarity=0.166 Sum_probs=59.0
Q ss_pred CCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCC-----------------C-EEEEEe
Q 019405 259 TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL-----------------P-IIASCG 320 (341)
Q Consensus 259 ~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~-----------------~-~l~s~~ 320 (341)
..+.+++.+|.+++.++...-|.|.++|+.++..++.+++..+..+.=+.....+ . +++-+-
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyap 387 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAP 387 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEec
Confidence 3578899999999888887789999999999988888887633222211111110 1 244566
Q ss_pred CCCcEEEEEcCCCceeeee
Q 019405 321 LDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 321 ~dg~v~iwd~~~~~~~~~~ 339 (341)
.-|.|.||.+++|..+..+
T Consensus 388 rRg~lEvW~~~~g~Rv~a~ 406 (415)
T PF14655_consen 388 RRGILEVWSMRQGPRVAAF 406 (415)
T ss_pred cCCeEEEEecCCCCEEEEE
Confidence 7899999999999988765
No 354
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.82 E-value=0.021 Score=53.39 Aligned_cols=255 Identities=12% Similarity=0.097 Sum_probs=123.1
Q ss_pred CceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccc--------cccccceeEEEcccceeE
Q 019405 65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREE--------SSSRSRTLLTCTTKGKAS 136 (341)
Q Consensus 65 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~g~~~ 136 (341)
+..|..++.++.|.-.|..+|+.+..+.................+.++...... .......++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 346888888999999999999988887653221110000011223333321000 001122677788888887
Q ss_pred EEEeeecccccc-cCCceEEEEEeecCC---ceEEEEecC--CCCEEEEeeC----------CCeEEEEECCCCceeeec
Q 019405 137 MRSIEVTKVSAE-SSCSTVKSWNVCASG---TIAFSKVDI--SEKFSLFGGK----------GVEVNVWDLDKCEKIWTA 200 (341)
Q Consensus 137 i~~~~~~~~~~~-~~~~~v~~~~~~~~~---~i~~~~~~~--~~~~l~~~~~----------d~~v~i~d~~~~~~~~~~ 200 (341)
-.|.+.++.... ..++.+. |...-.. .-..+.-.| .+..+++|+. +|.|+-+|.++|+.++.+
T Consensus 274 ALDA~TGk~~W~fg~~G~vd-l~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVD-LTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecCCCcee-eecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 777655442211 1111111 1100000 000111112 2345555542 688999999999999988
Q ss_pred CCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCC-eEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCC
Q 019405 201 KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH-QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS 279 (341)
Q Consensus 201 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d 279 (341)
......... . .+.+.....++.+. ..--+|.+.+. +..-.+... ..+....+.....-..
T Consensus 353 ~~g~p~~~~-----------~--~~~g~~~~~gg~n~W~~~s~D~~~gl--vy~ptGn~~----pd~~g~~r~~~~n~y~ 413 (764)
T TIGR03074 353 DPGNPDPTA-----------P--PAPGETYTRNTPNSWSVASYDEKLGL--VYLPMGNQT----PDQWGGDRTPADEKYS 413 (764)
T ss_pred ecCCCCccc-----------C--CCCCCEeccCCCCccCceEEcCCCCe--EEEeCCCcc----ccccCCccccCccccc
Confidence 743211000 0 11222222121111 22233333221 111111110 0110111101111235
Q ss_pred CCEEEEECCCCeEEeEEec-cccC-------ceeEEEecC-CCC---EEEEEeCCCcEEEEEcCCCceeeee
Q 019405 280 GDLASVDIRTGKLLGCFIG-KCSG-------SIRSIARHP-TLP---IIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 280 g~i~iwd~~~~~~~~~~~~-~~~~-------~i~~~~~~~-~~~---~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
+.|.-.|+++|+....++. ||.- ...-+.+.. +|+ .++.++.+|.+.++|-++|+.+..+
T Consensus 414 ~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 414 SSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred ceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 6678889999998887765 3211 111112222 553 7899999999999999999988753
No 355
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.81 E-value=0.0018 Score=56.15 Aligned_cols=156 Identities=13% Similarity=0.045 Sum_probs=95.3
Q ss_pred CceEEEEecCCCCEEEEe---eCC-CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEe-CCC
Q 019405 163 GTIAFSKVDISEKFSLFG---GKG-VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-NDH 237 (341)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~---~~d-~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~d~ 237 (341)
..+..-+|+|++..++.. ... ..+.++|+.+++....+.... .-...+| +|+|++|+... .|+
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g----------~~~~P~f--spDG~~l~f~~~rdg 260 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNG----------NNGAPAF--SPDGSKLAFSSSRDG 260 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCC----------ccCCccC--CCCCCEEEEEECCCC
Confidence 455666888888776643 222 469999999876655444221 1233467 88998877544 455
Q ss_pred e--EEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEe-CCCC--EEEEECCCCeEEeEEeccccCceeEEEecCC
Q 019405 238 Q--VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGD--LASVDIRTGKLLGCFIGKCSGSIRSIARHPT 312 (341)
Q Consensus 238 ~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~dg~--i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~ 312 (341)
. |.++|+.... +..+....+.-+.-.|+|+|+.|+-.+ ..|. |.+.|.+.+... .+... ...-..-.|+|+
T Consensus 261 ~~~iy~~dl~~~~--~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~-riT~~-~~~~~~p~~Spd 336 (425)
T COG0823 261 SPDIYLMDLDGKN--LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT-RLTFS-GGGNSNPVWSPD 336 (425)
T ss_pred CccEEEEcCCCCc--ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee-Eeecc-CCCCcCccCCCC
Confidence 4 6666776644 333544333334668999998887554 4454 666677655542 22221 112227789999
Q ss_pred CCEEEEEeCC-Cc--EEEEEcCCCc
Q 019405 313 LPIIASCGLD-SY--LRFWDIKTRQ 334 (341)
Q Consensus 313 ~~~l~s~~~d-g~--v~iwd~~~~~ 334 (341)
|.+|+..+.. |. |.+.|+.++.
T Consensus 337 G~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 337 GDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred CCEEEEEeccCCceeeEEeccCCCC
Confidence 9988877643 44 6777776655
No 356
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.74 E-value=0.001 Score=61.17 Aligned_cols=139 Identities=19% Similarity=0.191 Sum_probs=90.7
Q ss_pred ccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecC-----CCCEEEEeeCCCeEEEEECCCCc-eeeecCCCC
Q 019405 131 TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-----SEKFSLFGGKGVEVNVWDLDKCE-KIWTAKPPP 204 (341)
Q Consensus 131 ~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~d~~v~i~d~~~~~-~~~~~~~~~ 204 (341)
....+.-.|++.++ .|..|+.....+|..++-.. +....+.|-.++.+..||.+-.. .+..-..+
T Consensus 502 ~~~~ly~mDLe~GK--------VV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k- 572 (794)
T PF08553_consen 502 NPNKLYKMDLERGK--------VVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK- 572 (794)
T ss_pred CCCceEEEecCCCc--------EEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc-
Confidence 34666667776555 78899987655555554321 13345667788899999998532 11111110
Q ss_pred CCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEE
Q 019405 205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLAS 284 (341)
Q Consensus 205 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~i 284 (341)
.+ ......+|++- ..+| +||+|+.+|.||+||-- +.+....+.+-..+|..|..+.||++|++.+ +..|.+
T Consensus 573 --~Y--~~~~~Fs~~aT--t~~G-~iavgs~~G~IRLyd~~-g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlL 643 (794)
T PF08553_consen 573 --QY--SSKNNFSCFAT--TEDG-YIAVGSNKGDIRLYDRL-GKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLL 643 (794)
T ss_pred --cc--ccCCCceEEEe--cCCc-eEEEEeCCCcEEeeccc-chhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEE
Confidence 01 11234667766 5444 89999999999999943 3443445556678999999999999988765 456777
Q ss_pred EEC
Q 019405 285 VDI 287 (341)
Q Consensus 285 wd~ 287 (341)
++.
T Consensus 644 i~t 646 (794)
T PF08553_consen 644 IDT 646 (794)
T ss_pred EEE
Confidence 775
No 357
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.73 E-value=0.00013 Score=39.04 Aligned_cols=37 Identities=19% Similarity=0.255 Sum_probs=32.9
Q ss_pred eeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEE
Q 019405 250 PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVD 286 (341)
Q Consensus 250 ~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd 286 (341)
+...+..|...|.++.|++.+..+++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 3566777888999999999999999999999999996
No 358
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.69 E-value=0.037 Score=49.84 Aligned_cols=61 Identities=16% Similarity=0.104 Sum_probs=37.5
Q ss_pred CeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEecc
Q 019405 237 HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK 299 (341)
Q Consensus 237 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 299 (341)
+.|.-+|+.+++. +-..........+. ..-.+.+++.++.+|.++.+|.++|+.+.+++..
T Consensus 441 g~l~AiD~~tGk~-~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 441 GSLIAWDPITGKI-VWEHKEDFPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred eeEEEEeCCCCce-eeEecCCCCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 4566677777653 22222111111111 1124457778888999999999999999888753
No 359
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.66 E-value=0.00014 Score=65.40 Aligned_cols=107 Identities=9% Similarity=0.169 Sum_probs=80.3
Q ss_pred EEEEecCCCCEEEEEeC----CCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEe
Q 019405 219 AAFLSIDDHRKFVAGTN----DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLG 294 (341)
Q Consensus 219 ~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~ 294 (341)
..| +|...++++++. .|.|.||-- +++ |-..... .-.+++++|+|..-.|+.|-.-|.+.+|...+.+.-.
T Consensus 21 ~SW--HPsePlfAVA~fS~er~GSVtIfad-tGE-Pqr~Vt~-P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ht 95 (1416)
T KOG3617|consen 21 SSW--HPSEPLFAVASFSPERGGSVTIFAD-TGE-PQRDVTY-PVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHT 95 (1416)
T ss_pred ccc--CCCCceeEEEEecCCCCceEEEEec-CCC-CCccccc-ceehhhhccChHHHHHhhccccceeEEEecCCceeee
Confidence 356 677778877653 578888843 333 2222211 1135679999999899999999999999987665544
Q ss_pred EEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcC
Q 019405 295 CFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331 (341)
Q Consensus 295 ~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~ 331 (341)
....| ..+|..+.||++|..|+++..=|.|.+|...
T Consensus 96 v~~th-~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 96 VVETH-PAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eccCC-CCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 44444 9999999999999999999999999999876
No 360
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.59 E-value=0.00033 Score=64.75 Aligned_cols=102 Identities=20% Similarity=0.326 Sum_probs=76.3
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCcee
Q 019405 226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIR 305 (341)
Q Consensus 226 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~ 305 (341)
.+..++.|+..|.+-..|+...-.+...-..-..+|++++|+.+|+.++.|-.+|.|.+||..+++.++.+..+ ..+.+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~-~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEH-GAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeec-CCccc
Confidence 35578889989999999888643332332334579999999999999999999999999999999888877765 45544
Q ss_pred EE---EecCCCCEEEEEeCCCcEEEEEc
Q 019405 306 SI---ARHPTLPIIASCGLDSYLRFWDI 330 (341)
Q Consensus 306 ~~---~~~~~~~~l~s~~~dg~v~iwd~ 330 (341)
++ .+..++..++++..-|. +|.+
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 44 44456667888877776 5543
No 361
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.57 E-value=0.029 Score=48.37 Aligned_cols=158 Identities=15% Similarity=0.114 Sum_probs=108.6
Q ss_pred eEEEEecCCCCEEE-EeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeC---CCeEE
Q 019405 165 IAFSKVDISEKFSL-FGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN---DHQVR 240 (341)
Q Consensus 165 i~~~~~~~~~~~l~-~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---d~~i~ 240 (341)
-..+++++.++.++ ....++.|.+.|..+.+......... ....+++ +++++.+..+.. ++++.
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~----------~P~~~~~--~~~~~~vYV~n~~~~~~~vs 143 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL----------GPVGLAV--DPDGKYVYVANAGNGNNTVS 143 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc----------CCceEEE--CCCCCEEEEEecccCCceEE
Confidence 34667777777444 44456899999977766655544322 2456788 888877777655 68899
Q ss_pred EEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEe-CCCCEEEEECCCCeEEe-E----EeccccCceeEEEecCCCC
Q 019405 241 LYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLG-C----FIGKCSGSIRSIARHPTLP 314 (341)
Q Consensus 241 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~-~----~~~~~~~~i~~~~~~~~~~ 314 (341)
+.|..+.+. .........+ ..++++|+|..+++.. .++.|.+.|........ . ... ...-..+.++|++.
T Consensus 144 vid~~t~~~-~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~--~~~P~~i~v~~~g~ 219 (381)
T COG3391 144 VIDAATNKV-TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGV--GTGPAGIAVDPDGN 219 (381)
T ss_pred EEeCCCCeE-EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceecccccccccc--CCCCceEEECCCCC
Confidence 999887664 4444444445 8899999998776665 68899999987665553 1 111 23456789999999
Q ss_pred EEEEEeCC---CcEEEEEcCCCceeee
Q 019405 315 IIASCGLD---SYLRFWDIKTRQLLSA 338 (341)
Q Consensus 315 ~l~s~~~d---g~v~iwd~~~~~~~~~ 338 (341)
++...... +.+...|..++.....
T Consensus 220 ~~yV~~~~~~~~~v~~id~~~~~v~~~ 246 (381)
T COG3391 220 RVYVANDGSGSNNVLKIDTATGNVTAT 246 (381)
T ss_pred EEEEEeccCCCceEEEEeCCCceEEEe
Confidence 65544433 5899999988776654
No 362
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.51 E-value=0.0027 Score=54.50 Aligned_cols=143 Identities=16% Similarity=0.192 Sum_probs=93.1
Q ss_pred CCCEEE-EeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCC-------EEEEEeCCCeEEEEEc
Q 019405 173 SEKFSL-FGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-------KFVAGTNDHQVRLYDT 244 (341)
Q Consensus 173 ~~~~l~-~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------~l~~~~~d~~i~iwd~ 244 (341)
+.++|+ ++.....|+-.|++.|+.+.....+.. |+-+.+ .|+.+ .-+.|-.|..|.-||.
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d----------i~mv~~--t~d~K~~Ql~~e~TlvGLs~n~vfriDp 411 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD----------INMVDI--TPDFKFAQLTSEQTLVGLSDNSVFRIDP 411 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC----------cceeec--cCCcchhcccccccEEeecCCceEEecc
Confidence 344444 455566788999999998877766542 444455 33321 2345667888999998
Q ss_pred CCCCc-eeEEEEecC----CCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEE
Q 019405 245 SAQRR-PVMSFDFRE----TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASC 319 (341)
Q Consensus 245 ~~~~~-~~~~~~~~~----~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 319 (341)
+-... .+...++|. ....|.+-..+| +|++|+.+|.|++||--..+....+++- ..+|..+..+.+|.+|+..
T Consensus 412 Rv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgL-G~~I~hVdvtadGKwil~T 489 (644)
T KOG2395|consen 412 RVQGKNKLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGL-GDAIKHVDVTADGKWILAT 489 (644)
T ss_pred cccCcceeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhccccc-CCceeeEEeeccCcEEEEe
Confidence 85332 233333332 234455555555 8999999999999997333334456665 8899999999999988776
Q ss_pred eCCCcEEEEEc
Q 019405 320 GLDSYLRFWDI 330 (341)
Q Consensus 320 ~~dg~v~iwd~ 330 (341)
+.. .+.+-++
T Consensus 490 c~t-yLlLi~t 499 (644)
T KOG2395|consen 490 CKT-YLLLIDT 499 (644)
T ss_pred ccc-EEEEEEE
Confidence 544 5555554
No 363
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.50 E-value=0.033 Score=44.35 Aligned_cols=170 Identities=12% Similarity=0.081 Sum_probs=108.0
Q ss_pred EEEEEeecCCceEEEEecCCCCEEEEeeCCC--eEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEE
Q 019405 154 VKSWNVCASGTIAFSKVDISEKFSLFGGKGV--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV 231 (341)
Q Consensus 154 v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 231 (341)
+..+..........+.+..++.++-+.+.-| .|+.+|+.+++......-+.. ..-..++.. ++.+..
T Consensus 36 v~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~--------~FgEGit~~---~d~l~q 104 (264)
T PF05096_consen 36 VETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPR--------YFGEGITIL---GDKLYQ 104 (264)
T ss_dssp EEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT----------EEEEEEE---TTEEEE
T ss_pred EEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcc--------ccceeEEEE---CCEEEE
Confidence 3444444445567888877788888877766 699999999987766554431 223455552 344555
Q ss_pred EEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccc----cCceeEE
Q 019405 232 AGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC----SGSIRSI 307 (341)
Q Consensus 232 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~----~~~i~~~ 307 (341)
..-.++...+||..+.+. +..+... ..=+.++ .++..|+....+..|+++|..+.+....+.... -..++.+
T Consensus 105 LTWk~~~~f~yd~~tl~~-~~~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNEL 180 (264)
T PF05096_consen 105 LTWKEGTGFVYDPNTLKK-IGTFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNEL 180 (264)
T ss_dssp EESSSSEEEEEETTTTEE-EEEEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEE
T ss_pred EEecCCeEEEEccccceE-EEEEecC-CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeE
Confidence 566889999999998654 6666643 3556676 467778888888899999999888777665431 1246667
Q ss_pred EecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 308 ARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 308 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
.|- +|...|-.=....|..-|..+|+.+..+
T Consensus 181 E~i-~G~IyANVW~td~I~~Idp~tG~V~~~i 211 (264)
T PF05096_consen 181 EYI-NGKIYANVWQTDRIVRIDPETGKVVGWI 211 (264)
T ss_dssp EEE-TTEEEEEETTSSEEEEEETTT-BEEEEE
T ss_pred EEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEE
Confidence 775 6666665556667888899998887654
No 364
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.49 E-value=0.034 Score=44.39 Aligned_cols=213 Identities=12% Similarity=0.092 Sum_probs=108.3
Q ss_pred ccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccc
Q 019405 45 WGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSR 124 (341)
Q Consensus 45 ~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (341)
+.+-...+..+++.++.. .++++....+.|..++. +|+.++.+... ..+-.-.+.+...+.
T Consensus 17 l~g~~~e~SGLTy~pd~~---tLfaV~d~~~~i~els~-~G~vlr~i~l~-------g~~D~EgI~y~g~~~-------- 77 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTG---TLFAVQDEPGEIYELSL-DGKVLRRIPLD-------GFGDYEGITYLGNGR-------- 77 (248)
T ss_dssp -TT--S-EEEEEEETTTT---EEEEEETTTTEEEEEET-T--EEEEEE-S-------S-SSEEEEEE-STTE--------
T ss_pred CCCccCCccccEEcCCCC---eEEEEECCCCEEEEEcC-CCCEEEEEeCC-------CCCCceeEEEECCCE--------
Confidence 444445577888887644 36777888999999997 58888777652 113344455544333
Q ss_pred eeEEEcccceeEEEEeeecccccccCCceEEEEEe----ecCCceEEEEecCCCCEEEEeeCCCeEEEEECCC---Ccee
Q 019405 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV----CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDK---CEKI 197 (341)
Q Consensus 125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~----~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~---~~~~ 197 (341)
.+++--.++.+.+..+....... ....+..+.. .....+-.++|++.++.|+.+-......+|.+.. ...+
T Consensus 78 ~vl~~Er~~~L~~~~~~~~~~~~--~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~ 155 (248)
T PF06977_consen 78 YVLSEERDQRLYIFTIDDDTTSL--DRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDL 155 (248)
T ss_dssp EEEEETTTTEEEEEEE----TT----EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--
T ss_pred EEEEEcCCCcEEEEEEecccccc--chhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccce
Confidence 55555457888888874432111 1111222222 2335688999999888887776665666666543 1111
Q ss_pred eecCC--CCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecC---------CCeEEEEE
Q 019405 198 WTAKP--PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE---------TPIKAVAE 266 (341)
Q Consensus 198 ~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---------~~v~~~~~ 266 (341)
..... ....... ..-+.+++++ +..+.+++.+..+..|..+|.. ++ ++..+.... ..--.|+|
T Consensus 156 ~~~~~~~~~~~~~~---~~d~S~l~~~-p~t~~lliLS~es~~l~~~d~~-G~-~~~~~~L~~g~~gl~~~~~QpEGIa~ 229 (248)
T PF06977_consen 156 FVSDDQDLDDDKLF---VRDLSGLSYD-PRTGHLLILSDESRLLLELDRQ-GR-VVSSLSLDRGFHGLSKDIPQPEGIAF 229 (248)
T ss_dssp EEEE-HHHH-HT-----SS---EEEEE-TTTTEEEEEETTTTEEEEE-TT----EEEEEE-STTGGG-SS---SEEEEEE
T ss_pred eeccccccccccce---eccccceEEc-CCCCeEEEEECCCCeEEEECCC-CC-EEEEEEeCCcccCcccccCCccEEEE
Confidence 11000 0000111 1236788886 4566778888888999999944 34 344443322 24567999
Q ss_pred cCCCceEEEEeCCCCEEEE
Q 019405 267 EPDSFNIYIGNGSGDLASV 285 (341)
Q Consensus 267 ~~~~~~l~~g~~dg~i~iw 285 (341)
.++|. |+..+.-+..+.|
T Consensus 230 d~~G~-LYIvsEpNlfy~f 247 (248)
T PF06977_consen 230 DPDGN-LYIVSEPNLFYRF 247 (248)
T ss_dssp -TT---EEEEETTTEEEEE
T ss_pred CCCCC-EEEEcCCceEEEe
Confidence 99985 4445566655554
No 365
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.48 E-value=0.00044 Score=38.96 Aligned_cols=35 Identities=17% Similarity=0.274 Sum_probs=31.4
Q ss_pred cCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCcee
Q 019405 301 SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLL 336 (341)
Q Consensus 301 ~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 336 (341)
...|..++|+|...+||.++.||.|.+|.+ +++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 457999999999999999999999999999 66654
No 366
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.39 E-value=0.057 Score=44.71 Aligned_cols=191 Identities=13% Similarity=0.068 Sum_probs=103.2
Q ss_pred EEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCC
Q 019405 127 LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKN 206 (341)
Q Consensus 127 ~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~ 206 (341)
.+--..+.+.-|+.. .+..+.|.. ...+.++..-..+..|+++.. .+.+++.+++.....+......
T Consensus 41 w~DI~~~~i~r~~~~---------~g~~~~~~~--p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~ 107 (307)
T COG3386 41 WVDILGGRIHRLDPE---------TGKKRVFPS--PGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPEDG 107 (307)
T ss_pred EEeCCCCeEEEecCC---------cCceEEEEC--CCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccCC
Confidence 333344555555542 234455553 334444444444555555443 3666777655553222221111
Q ss_pred ccCccCCeeeeEEEEEecCCCCEEEEEeC-----------CCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEE
Q 019405 207 SLGIFTPTWFTSAAFLSIDDHRKFVAGTN-----------DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYI 275 (341)
Q Consensus 207 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-----------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 275 (341)
. .....+.... .|+|.+.++... -|.|+.+|. .+. .++.+..+-..-+.++||||++.|+.
T Consensus 108 ~----~~~r~ND~~v--~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~-~~~l~~~~~~~~NGla~SpDg~tly~ 179 (307)
T COG3386 108 L----PLNRPNDGVV--DPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGG-VVRLLDDDLTIPNGLAFSPDGKTLYV 179 (307)
T ss_pred C----CcCCCCceeE--cCCCCEEEeCCCccccCccccCCcceEEEEcC-CCC-EEEeecCcEEecCceEECCCCCEEEE
Confidence 0 1133455566 677766555333 133444443 222 24444443445568999999988877
Q ss_pred EeCC-CCEEEEECCC--C----eEEeEEeccccCceeEEEecCCCCEEEEEeCCC-cEEEEEcCCCceeeee
Q 019405 276 GNGS-GDLASVDIRT--G----KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDS-YLRFWDIKTRQLLSAV 339 (341)
Q Consensus 276 g~~d-g~i~iwd~~~--~----~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg-~v~iwd~~~~~~~~~~ 339 (341)
.... +.|+-|++.. + +....+.....+..-.++...+|.+.+++-.+| .|.+|+.+ |+++.++
T Consensus 180 aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i 250 (307)
T COG3386 180 ADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEI 250 (307)
T ss_pred EeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEE
Confidence 7654 7788887752 2 111111111145556677888888776555554 89999998 8888765
No 367
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.36 E-value=0.021 Score=49.06 Aligned_cols=238 Identities=10% Similarity=0.027 Sum_probs=105.1
Q ss_pred ccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccc
Q 019405 45 WGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSR 124 (341)
Q Consensus 45 ~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (341)
+....++|++++.|.-+ ++|.|..+|.+.|.|++....+..-..............++++.|.--.-...+-..-
T Consensus 82 ~~~~~g~vtal~~S~iG-----Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi 156 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDIG-----FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSI 156 (395)
T ss_dssp E---S-SEEEEEE-BTS-----EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEE
T ss_pred eeccCCcEeEEecCCCc-----EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccce
Confidence 33457888888877444 5999999999999999765554432211100001123445555553211110001112
Q ss_pred eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCC
Q 019405 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP 204 (341)
Q Consensus 125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~ 204 (341)
.+++|+..|.+.+|.+.-.... .-.+...+.. ...++.. ..|...|.++++........-
T Consensus 157 ~L~vGTn~G~v~~fkIlp~~~g----~f~v~~~~~~---------~~~~~~i-------~~I~~i~~~~G~~a~At~~~~ 216 (395)
T PF08596_consen 157 CLLVGTNSGNVLTFKILPSSNG----RFSVQFAGAT---------TNHDSPI-------LSIIPINADTGESALATISAM 216 (395)
T ss_dssp EEEEEETTSEEEEEEEEE-GGG-----EEEEEEEEE-----------SS-----------EEEEEETTT--B-B-BHHHH
T ss_pred EEEEEeCCCCEEEEEEecCCCC----ceEEEEeecc---------ccCCCce-------EEEEEEECCCCCcccCchhHh
Confidence 6777788888888876421110 0011111110 0011111 123334555444321110000
Q ss_pred CCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEE-----cCCCceEEEEeCC
Q 019405 205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAE-----EPDSFNIYIGNGS 279 (341)
Q Consensus 205 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~-----~~~~~~l~~g~~d 279 (341)
. ... ..+. ...++++ ..+..+|++...+.+...+.+ ........+.+ ...+..|++-..+
T Consensus 217 ~---~l~-----~g~~-----i~g~vVv-vSe~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~ 281 (395)
T PF08596_consen 217 Q---GLS-----KGIS-----IPGYVVV-VSESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNN 281 (395)
T ss_dssp H---GGG-----GT---------EEEEE-E-SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETT
T ss_pred h---ccc-----cCCC-----cCcEEEE-EcccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECC
Confidence 0 000 0000 1123333 346789999988766533333 11112233444 2356678888899
Q ss_pred CCEEEEECCCCeEEeEEeccc---cCceeEEEecCCCCEEEEEeCC
Q 019405 280 GDLASVDIRTGKLLGCFIGKC---SGSIRSIARHPTLPIIASCGLD 322 (341)
Q Consensus 280 g~i~iwd~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~s~~~d 322 (341)
|.+++|.+..-+.+..++-+. ...+....++++|..++-.+..
T Consensus 282 G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gps 327 (395)
T PF08596_consen 282 GSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGPS 327 (395)
T ss_dssp SEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SSS
T ss_pred CcEEEEECCCchHhhcccCCCccccccccccEECCCCCEEEEeCcc
Confidence 999999999988887776531 2345667788899877666544
No 368
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.35 E-value=0.021 Score=38.74 Aligned_cols=102 Identities=11% Similarity=0.130 Sum_probs=68.4
Q ss_pred eeEEEEEe-cC-CCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEE
Q 019405 216 FTSAAFLS-ID-DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLL 293 (341)
Q Consensus 216 v~~~~~~~-~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~ 293 (341)
|++++++. .. ..+.|++|+.|..||+|+-.. .+..+... +.|++++-... ..++-+..+|+|-+|+- .+.+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e---~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE---IVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc---EEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeC--ccee
Confidence 55666541 11 236899999999999998443 46666644 57788777666 46888899999999975 3444
Q ss_pred eEEeccccCceeEEEecC-C--C-CEEEEEeCCCcEE
Q 019405 294 GCFIGKCSGSIRSIARHP-T--L-PIIASCGLDSYLR 326 (341)
Q Consensus 294 ~~~~~~~~~~i~~~~~~~-~--~-~~l~s~~~dg~v~ 326 (341)
...+. ...+.++++.. + | +-|++|=.+|.|-
T Consensus 75 WRiKS--K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 WRIKS--KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeecc--CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 44544 34466666543 3 2 2688888888764
No 369
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.33 E-value=0.14 Score=47.86 Aligned_cols=287 Identities=14% Similarity=0.048 Sum_probs=145.6
Q ss_pred CCccceeecCCCCCceeeeecCCCCeEEEEEecCccCccceee--eccCCCCCceeEEEeccCCCCCceEEEEccCCeEE
Q 019405 1 MPRTTTLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVE--RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTD 78 (341)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~ 78 (341)
.||...+.+......-++++..||.+..+.+... +|...-.. .+ ...++..-.|+..... .+.+. .|.-..
T Consensus 582 iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~-tg~lsd~Kk~~l--Gt~P~~Lr~f~sk~~t---~vfa~-sdrP~v 654 (1096)
T KOG1897|consen 582 IPRSILLTTFEGDIHYLLVALGDGALLYFVLDIN-TGQLSDRKKVTL--GTQPISLRTFSSKSRT---AVFAL-SDRPTV 654 (1096)
T ss_pred cchheeeEEeeccceEEEEEcCCceEEEEEEEcc-cceEcccccccc--CCCCcEEEEEeeCCce---EEEEe-CCCCEE
Confidence 3677777777777778899999999987776665 33211111 12 2344444445544431 23333 344445
Q ss_pred EeeCCCCcchhe-eeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEE
Q 019405 79 ILNPLNGDLRVA-ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSW 157 (341)
Q Consensus 79 iw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~ 157 (341)
+|.- +++...+ +.. ..+..++-++... ....++.+ ..+.+.+..++.-+ .+.+-
T Consensus 655 iY~~-n~kLv~spls~----------kev~~~c~f~s~a-----~~d~l~~~-~~~~l~i~tid~iq--------kl~ir 709 (1096)
T KOG1897|consen 655 IYSS-NGKLVYSPLSL----------KEVNHMCPFNSDA-----YPDSLASA-NGGALTIGTIDEIQ--------KLHIR 709 (1096)
T ss_pred EEec-CCcEEEeccch----------HHhhhhccccccc-----CCceEEEe-cCCceEEEEecchh--------hccee
Confidence 5543 2222111 111 1111122222211 11123333 34455555544222 11111
Q ss_pred EeecCCceEEEEecCCCCEEEEeeC-----------C---CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEe
Q 019405 158 NVCASGTIAFSKVDISEKFSLFGGK-----------G---VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS 223 (341)
Q Consensus 158 ~~~~~~~i~~~~~~~~~~~l~~~~~-----------d---~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 223 (341)
.+.-+.....+++.+....+++.+. . ..++++|-.+.+.+...+....+. ...+.++.|
T Consensus 710 tvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~-----~~Si~s~~~-- 782 (1096)
T KOG1897|consen 710 TVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNET-----ALSIISCKF-- 782 (1096)
T ss_pred eecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccce-----eeeeeeeee--
Confidence 1222333444444443333332221 1 136677776665554333322111 123555567
Q ss_pred cCC-CCEEEEEeC----------CCeEEEEEcCCCCceeEEEEec--CCCeEEEEEcCCCceEEEEeCCCCEEEEECCCC
Q 019405 224 IDD-HRKFVAGTN----------DHQVRLYDTSAQRRPVMSFDFR--ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG 290 (341)
Q Consensus 224 ~~~-~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~ 290 (341)
..+ +.++++|.. .|.|.+|.+...+. ++....+ ++.+.++.. -+|+++|.- ...|++|+..+.
T Consensus 783 ~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~-L~~v~e~~v~Gav~aL~~-fngkllA~I--n~~vrLye~t~~ 858 (1096)
T KOG1897|consen 783 TDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS-LELVAETVVKGAVYALVE-FNGKLLAGI--NQSVRLYEWTTE 858 (1096)
T ss_pred cCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc-eeeeeeeeeccceeehhh-hCCeEEEec--CcEEEEEEcccc
Confidence 344 667777653 46788887776332 3333222 234444432 256666543 458999999888
Q ss_pred eEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcC
Q 019405 291 KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331 (341)
Q Consensus 291 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~ 331 (341)
+.++.-..+ ..++..+...-.|..++.|..-+++.+...+
T Consensus 859 ~eLr~e~~~-~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~ 898 (1096)
T KOG1897|consen 859 RELRIECNI-SNPIIALDLQVKGDEIAVGDLMRSITLLQYK 898 (1096)
T ss_pred ceehhhhcc-cCCeEEEEEEecCcEEEEeeccceEEEEEEe
Confidence 777666665 7788999998899999999877776654443
No 370
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.32 E-value=0.018 Score=49.65 Aligned_cols=144 Identities=22% Similarity=0.187 Sum_probs=92.4
Q ss_pred eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCC-------EEEEeeCCCeEEEEECCC-Cc-
Q 019405 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK-------FSLFGGKGVEVNVWDLDK-CE- 195 (341)
Q Consensus 125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~-------~l~~~~~d~~v~i~d~~~-~~- 195 (341)
.+..+.....+.-.|++.++ .|..|.... .|.-+.+.|+.+ .-+.|-.++.|.-||.+- +.
T Consensus 348 il~~~~~~~~l~klDIE~GK--------IVeEWk~~~--di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~ 417 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGK--------IVEEWKFED--DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN 417 (644)
T ss_pred EeeCCCCcCcceeeecccce--------eeeEeeccC--CcceeeccCCcchhcccccccEEeecCCceEEecccccCcc
Confidence 44555555667777777555 678888753 477777777542 223466788899999873 22
Q ss_pred eeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEE
Q 019405 196 KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYI 275 (341)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 275 (341)
.+...+.+. +. ......|.+- . ...++++|+.+|.||+||. .+.+....+.+-..+|..+..+.+|++|++
T Consensus 418 kl~~~q~kq---y~--~k~nFsc~aT--T-~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~ 488 (644)
T KOG2395|consen 418 KLAVVQSKQ---YS--TKNNFSCFAT--T-ESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILA 488 (644)
T ss_pred eeeeeeccc---cc--cccccceeee--c-CCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEE
Confidence 111111110 00 0122455554 3 4458999999999999997 444445566777789999999999998876
Q ss_pred EeCCCCEEEEECC
Q 019405 276 GNGSGDLASVDIR 288 (341)
Q Consensus 276 g~~dg~i~iwd~~ 288 (341)
.+ +..+.+-++.
T Consensus 489 Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 489 TC-KTYLLLIDTL 500 (644)
T ss_pred ec-ccEEEEEEEe
Confidence 55 5566666653
No 371
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.32 E-value=0.096 Score=45.63 Aligned_cols=162 Identities=14% Similarity=-0.001 Sum_probs=78.6
Q ss_pred CceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEE
Q 019405 163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY 242 (341)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iw 242 (341)
+.+.++.|+.+. .|++...||.+++||+. |+....+.... ....+ ....+....+ ..+| .++ -..++.+.+.
T Consensus 81 ~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~-G~~~fsl~~~i-~~~~v-~e~~i~~~~~--~~~G-ivv-Lt~~~~~~~v 152 (410)
T PF04841_consen 81 GRIVGMGWTDDE-ELVVVQSDGTVRVYDLF-GEFQFSLGEEI-EEEKV-LECRIFAIWF--YKNG-IVV-LTGNNRFYVV 152 (410)
T ss_pred CCEEEEEECCCC-eEEEEEcCCEEEEEeCC-Cceeechhhhc-cccCc-cccccccccc--CCCC-EEE-ECCCCeEEEE
Confidence 688899998754 55566799999999986 33322111110 00000 0011222222 2244 222 2334444443
Q ss_pred EcCCCCceeEEEEe--------cCC-CeEE-EEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCC
Q 019405 243 DTSAQRRPVMSFDF--------RET-PIKA-VAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPT 312 (341)
Q Consensus 243 d~~~~~~~~~~~~~--------~~~-~v~~-~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~ 312 (341)
+-.......+.+.. +.. .... ..++.+....+....++.+.+.+-...+. +.. .+++..|+.||+
T Consensus 153 ~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~~--~~~i~~iavSpn 227 (410)
T PF04841_consen 153 NNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---IDS--DGPIIKIAVSPN 227 (410)
T ss_pred eCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---ccC--CCCeEEEEECCC
Confidence 22211100111100 000 0000 12333333444444444555443322111 211 368999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCceee
Q 019405 313 LPIIASCGLDSYLRFWDIKTRQLLS 337 (341)
Q Consensus 313 ~~~l~s~~~dg~v~iwd~~~~~~~~ 337 (341)
++++|.-..+|.+.+....-.+.+.
T Consensus 228 g~~iAl~t~~g~l~v~ssDf~~~~~ 252 (410)
T PF04841_consen 228 GKFIALFTDSGNLWVVSSDFSEKLC 252 (410)
T ss_pred CCEEEEEECCCCEEEEECcccceeE
Confidence 9999999999999888765544443
No 372
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.30 E-value=0.096 Score=45.22 Aligned_cols=189 Identities=19% Similarity=0.154 Sum_probs=125.3
Q ss_pred eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeC---CCeEEEEECCCCceeeecC
Q 019405 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK---GVEVNVWDLDKCEKIWTAK 201 (341)
Q Consensus 125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~v~i~d~~~~~~~~~~~ 201 (341)
.++....++.+.+.+..... .+.... -+..-..++++++++.+..+.. ++++.+.|..+.+......
T Consensus 88 vyv~~~~~~~v~vid~~~~~--------~~~~~~--vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~ 157 (381)
T COG3391 88 VYVTTGDSNTVSVIDTATNT--------VLGSIP--VGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIP 157 (381)
T ss_pred EEEecCCCCeEEEEcCcccc--------eeeEee--eccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEe
Confidence 45555556778887744332 111111 1225568899999988777655 6889999998888877743
Q ss_pred CCCCCccCccCCeeeeEEEEEecCCCCEEEEEe-CCCeEEEEEcCCCCceeE-----EEEecCCCeEEEEEcCCCceEEE
Q 019405 202 PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-NDHQVRLYDTSAQRRPVM-----SFDFRETPIKAVAEEPDSFNIYI 275 (341)
Q Consensus 202 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~ 275 (341)
... . -..+++ +|+++.++... .++.|.++|...... .+ ..... ..-..+.++|+|..+++
T Consensus 158 vG~---------~-P~~~a~--~p~g~~vyv~~~~~~~v~vi~~~~~~v-~~~~~~~~~~~~-~~P~~i~v~~~g~~~yV 223 (381)
T COG3391 158 VGN---------T-PTGVAV--DPDGNKVYVTNSDDNTVSVIDTSGNSV-VRGSVGSLVGVG-TGPAGIAVDPDGNRVYV 223 (381)
T ss_pred cCC---------C-cceEEE--CCCCCeEEEEecCCCeEEEEeCCCcce-eccccccccccC-CCCceEEECCCCCEEEE
Confidence 322 1 156778 89999766655 788999999776432 21 01112 23356889999987776
Q ss_pred EeCC---CCEEEEECCCCeEEeE-EeccccCceeEEEecCCCCEEEEEe-CCCcEEEEEcCCCceeee
Q 019405 276 GNGS---GDLASVDIRTGKLLGC-FIGKCSGSIRSIARHPTLPIIASCG-LDSYLRFWDIKTRQLLSA 338 (341)
Q Consensus 276 g~~d---g~i~iwd~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~ 338 (341)
.... +.+...|..++..... ...... .-..+..+|+|..+.... ..+.+.+-|..+.+....
T Consensus 224 ~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~ 290 (381)
T COG3391 224 ANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKT 290 (381)
T ss_pred EeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeee
Confidence 5544 5899999998877665 222212 456789999999877764 447899999888766554
No 373
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.21 E-value=0.0092 Score=51.80 Aligned_cols=137 Identities=18% Similarity=0.148 Sum_probs=79.1
Q ss_pred EEEEecCCCCEEEEe-eCCCe--EEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeC-CC--eE
Q 019405 166 AFSKVDISEKFSLFG-GKGVE--VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DH--QV 239 (341)
Q Consensus 166 ~~~~~~~~~~~l~~~-~~d~~--v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-d~--~i 239 (341)
..-+|+|||+.|+.+ ..||. |+++|+..++... +...... -..-.| +|+|+.++..+. .| .|
T Consensus 241 ~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi---------~~~Ps~--spdG~~ivf~Sdr~G~p~I 308 (425)
T COG0823 241 GAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGI---------NTSPSW--SPDGSKIVFTSDRGGRPQI 308 (425)
T ss_pred CCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-cccCCcc---------ccCccC--CCCCCEEEEEeCCCCCcce
Confidence 345789999887754 44554 6777877665322 3322211 113355 899998887654 34 46
Q ss_pred EEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeC-CCC--EEEEECCCCeEEeEEeccccCceeEEEecCCCCEE
Q 019405 240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SGD--LASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPII 316 (341)
Q Consensus 240 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-dg~--i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 316 (341)
.++|..... ...+......-..-.|+|+|++|+..+. +|. |.+.|+.++..++.+.. ........|.+++..+
T Consensus 309 ~~~~~~g~~--~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~--~~~~e~ps~~~ng~~i 384 (425)
T COG0823 309 YLYDLEGSQ--VTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTS--TYLNESPSWAPNGRMI 384 (425)
T ss_pred EEECCCCCc--eeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccc--cccCCCCCcCCCCceE
Confidence 666666543 3444443333337789999999887664 344 67777766654443432 2233345566666644
Q ss_pred EE
Q 019405 317 AS 318 (341)
Q Consensus 317 ~s 318 (341)
..
T Consensus 385 ~~ 386 (425)
T COG0823 385 MF 386 (425)
T ss_pred EE
Confidence 43
No 374
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.16 E-value=0.052 Score=46.37 Aligned_cols=169 Identities=13% Similarity=0.093 Sum_probs=88.5
Q ss_pred CCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccC---------CeeeeEEEEEecCCCCEEEE
Q 019405 162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFT---------PTWFTSAAFLSIDDHRKFVA 232 (341)
Q Consensus 162 ~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~~~l~~ 232 (341)
...+....|+|+|+.++... ++.|.+++..+++..+--... ......+. -..-..+.| +|++++|+.
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg-~~~i~nG~~dwvyeEEv~~~~~~~~W--Spd~~~la~ 117 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDG-EPGIYNGVPDWVYEEEVFDRRSAVWW--SPDSKYLAF 117 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES---TTTEEESB--HHHHHHTSSSSBSEEE---TTSSEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEecccc-ceeEEcCccceeccccccccccceEE--CCCCCEEEE
Confidence 35688899999999999875 568999998777444322221 11100000 012345678 899988887
Q ss_pred EeCC-Ce-----------------------------------EEEEEcCCCCceeEEEE----ecCCCeEEEEEcCCCce
Q 019405 233 GTND-HQ-----------------------------------VRLYDTSAQRRPVMSFD----FRETPIKAVAEEPDSFN 272 (341)
Q Consensus 233 ~~~d-~~-----------------------------------i~iwd~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~ 272 (341)
...| .. +.++|+.+++....... .....+..+.|.+++..
T Consensus 118 ~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~ 197 (353)
T PF00930_consen 118 LRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKR 197 (353)
T ss_dssp EEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEE
T ss_pred EEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcE
Confidence 5443 22 23344443332111111 12234678899999884
Q ss_pred EEEEe--CCC---CEEEEECCCCeEEeEEeccccCce---eEEEec-CCCC-EEEEEeCCCc--EEEEEcCCCc
Q 019405 273 IYIGN--GSG---DLASVDIRTGKLLGCFIGKCSGSI---RSIARH-PTLP-IIASCGLDSY--LRFWDIKTRQ 334 (341)
Q Consensus 273 l~~g~--~dg---~i~iwd~~~~~~~~~~~~~~~~~i---~~~~~~-~~~~-~l~s~~~dg~--v~iwd~~~~~ 334 (341)
|+... .+. .+.++|..+++....+.....+.| ....|. +++. +|.....||. |.+++...+.
T Consensus 198 l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~ 271 (353)
T PF00930_consen 198 LWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK 271 (353)
T ss_dssp EEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE
T ss_pred EEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc
Confidence 44333 332 367778877654333332223333 245554 5555 5555557775 4455555443
No 375
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.15 E-value=0.0015 Score=36.85 Aligned_cols=35 Identities=11% Similarity=0.175 Sum_probs=30.5
Q ss_pred CCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEE
Q 019405 258 ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLL 293 (341)
Q Consensus 258 ~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~ 293 (341)
...|..++|+|...+||.++.+|.|.++.+ +++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 356899999999999999999999999998 56544
No 376
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.11 E-value=0.12 Score=42.80 Aligned_cols=214 Identities=15% Similarity=0.087 Sum_probs=116.8
Q ss_pred eEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccc
Q 019405 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS 146 (341)
Q Consensus 67 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~ 146 (341)
++.+--..+.|.-|+..+++. ..+.. .+.+.+....+... .|+++.. -+.+++.+..
T Consensus 39 L~w~DI~~~~i~r~~~~~g~~-~~~~~---------p~~~~~~~~~d~~g--------~Lv~~~~--g~~~~~~~~~--- 95 (307)
T COG3386 39 LLWVDILGGRIHRLDPETGKK-RVFPS---------PGGFSSGALIDAGG--------RLIACEH--GVRLLDPDTG--- 95 (307)
T ss_pred EEEEeCCCCeEEEecCCcCce-EEEEC---------CCCcccceeecCCC--------eEEEEcc--ccEEEeccCC---
Confidence 455555678899998876543 22222 13344455555444 5555543 2333333211
Q ss_pred cccCCceEEEEE-eec---CCceEEEEecCCCCEEEEeeC-----------CCeEEEEECCCCceeeecCCCCCCccCcc
Q 019405 147 AESSCSTVKSWN-VCA---SGTIAFSKVDISEKFSLFGGK-----------GVEVNVWDLDKCEKIWTAKPPPKNSLGIF 211 (341)
Q Consensus 147 ~~~~~~~v~~~~-~~~---~~~i~~~~~~~~~~~l~~~~~-----------d~~v~i~d~~~~~~~~~~~~~~~~~~~~~ 211 (341)
+.+..+. ... ....+.+.+.|+|.+.+.... -|.|+.+|. .+.....+..+-
T Consensus 96 -----~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~------- 162 (307)
T COG3386 96 -----GKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDL------- 162 (307)
T ss_pred -----ceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcE-------
Confidence 1212211 111 123456677788876664332 122333333 344443333321
Q ss_pred CCeeeeEEEEEecCCCCEEEEEeC-CCeEEEEEcCC--C---C-ceeEEEEecCCCeEEEEEcCCCceEEEEeCCC-CEE
Q 019405 212 TPTWFTSAAFLSIDDHRKFVAGTN-DHQVRLYDTSA--Q---R-RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG-DLA 283 (341)
Q Consensus 212 ~~~~v~~~~~~~~~~~~~l~~~~~-d~~i~iwd~~~--~---~-~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg-~i~ 283 (341)
..-+.++| +|+++.|+.+.. .+.|.-|++.. + . .....+....+..-.++...+|.+.+++-.+| .|.
T Consensus 163 --~~~NGla~--SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~ 238 (307)
T COG3386 163 --TIPNGLAF--SPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVV 238 (307)
T ss_pred --EecCceEE--CCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEE
Confidence 33578899 999987776654 47788887752 1 1 11122222334455677778887775444444 899
Q ss_pred EEECCCCeEEeEEeccccCceeEEEecC-CCCE-EEEEeCC
Q 019405 284 SVDIRTGKLLGCFIGKCSGSIRSIARHP-TLPI-IASCGLD 322 (341)
Q Consensus 284 iwd~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~-l~s~~~d 322 (341)
.|+.. ++++..+..+ ...+++++|-- +.+. ++|+...
T Consensus 239 ~~~pd-G~l~~~i~lP-~~~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 239 RFNPD-GKLLGEIKLP-VKRPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred EECCC-CcEEEEEECC-CCCCccceEeCCCcCEEEEEecCC
Confidence 99998 9999998877 57888888854 4444 4444333
No 377
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.05 E-value=0.037 Score=50.32 Aligned_cols=147 Identities=12% Similarity=-0.009 Sum_probs=81.9
Q ss_pred ceEEEEecCCCCEEEEee------CCC--eEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeC
Q 019405 164 TIAFSKVDISEKFSLFGG------KGV--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN 235 (341)
Q Consensus 164 ~i~~~~~~~~~~~l~~~~------~d~--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 235 (341)
.+...+++|+++.++..- .|. .|.+++... .. ..+... .....-.| +|++..|++...
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt~g----------~~~t~PsW--spDG~~lw~v~d 416 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVLEG----------HSLTRPSW--SLDADAVWVVVD 416 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeeecC----------CCCCCceE--CCCCCceEEEec
Confidence 466788999999887655 233 455555422 22 222111 11455677 888877776643
Q ss_pred C------------CeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEE---EECCCCeE-E---eEE
Q 019405 236 D------------HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLAS---VDIRTGKL-L---GCF 296 (341)
Q Consensus 236 d------------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~i---wd~~~~~~-~---~~~ 296 (341)
. +.+.+.++..++. .. .....|..+.|||||..++... ++.|++ -....|+. + ..+
T Consensus 417 g~~~~~v~~~~~~gql~~~~vd~ge~-~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l 491 (591)
T PRK13616 417 GNTVVRVIRDPATGQLARTPVDASAV-AS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREV 491 (591)
T ss_pred CcceEEEeccCCCceEEEEeccCchh-hh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEe
Confidence 2 2233333333221 11 2245799999999998887655 477777 44444541 1 112
Q ss_pred eccccCceeEEEecCCCCEEEEEeCCCcEEEEEc
Q 019405 297 IGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDI 330 (341)
Q Consensus 297 ~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~ 330 (341)
.......+.++.|.+++.++ .+..++...+|.+
T Consensus 492 ~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v 524 (591)
T PRK13616 492 GPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYV 524 (591)
T ss_pred ecccCCccccceEecCCEEE-EEecCCCCceEEE
Confidence 22113346889999999855 4444444444543
No 378
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.04 E-value=0.099 Score=40.52 Aligned_cols=92 Identities=18% Similarity=0.167 Sum_probs=62.4
Q ss_pred eEEEEEecCCCCEE-EEEeCCCeEEEEE--cCCCC----ceeEEEEe---cCCC-eEEEEEcCCCceEEEEeCCCCEEEE
Q 019405 217 TSAAFLSIDDHRKF-VAGTNDHQVRLYD--TSAQR----RPVMSFDF---RETP-IKAVAEEPDSFNIYIGNGSGDLASV 285 (341)
Q Consensus 217 ~~~~~~~~~~~~~l-~~~~~d~~i~iwd--~~~~~----~~~~~~~~---~~~~-v~~~~~~~~~~~l~~g~~dg~i~iw 285 (341)
+.++| +.+.+.+ ++-+.+-.|.-|| ..++. ..+..++. .+.. --.++...+|.+.++....++|..+
T Consensus 161 Ngl~W--d~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~ 238 (310)
T KOG4499|consen 161 NGLAW--DSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKV 238 (310)
T ss_pred ccccc--cccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEE
Confidence 46778 5555444 4556677787787 44432 11222221 1111 2245666788888888899999999
Q ss_pred ECCCCeEEeEEeccccCceeEEEecC
Q 019405 286 DIRTGKLLGCFIGKCSGSIRSIARHP 311 (341)
Q Consensus 286 d~~~~~~~~~~~~~~~~~i~~~~~~~ 311 (341)
|+.+|+.+.+++-+ ...|++++|--
T Consensus 239 dp~tGK~L~eiklP-t~qitsccFgG 263 (310)
T KOG4499|consen 239 DPTTGKILLEIKLP-TPQITSCCFGG 263 (310)
T ss_pred CCCCCcEEEEEEcC-CCceEEEEecC
Confidence 99999999999988 88999999964
No 379
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.01 E-value=0.11 Score=41.71 Aligned_cols=165 Identities=7% Similarity=0.068 Sum_probs=106.4
Q ss_pred CceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEE
Q 019405 163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY 242 (341)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iw 242 (341)
..+.++.|+|+.+.|++......-.++=-.+|+.+..++-.... -...+.| -.++.++++--.++.+.++
T Consensus 86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~--------DpE~Iey--ig~n~fvi~dER~~~l~~~ 155 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFS--------DPETIEY--IGGNQFVIVDERDRALYLF 155 (316)
T ss_pred ccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccC--------ChhHeEE--ecCCEEEEEehhcceEEEE
Confidence 34889999999999998887777777766788888887654321 1345667 4567777777788888888
Q ss_pred EcCCCCcee--E--EE-----EecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeE---EeEEecc------ccCce
Q 019405 243 DTSAQRRPV--M--SF-----DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL---LGCFIGK------CSGSI 304 (341)
Q Consensus 243 d~~~~~~~~--~--~~-----~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~---~~~~~~~------~~~~i 304 (341)
.+......+ . .+ ...+...-.++|.|..+.|+.+=.-.-+.||....... +.....+ .-..|
T Consensus 156 ~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~Dv 235 (316)
T COG3204 156 TVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDV 235 (316)
T ss_pred EEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecc
Confidence 776543211 0 11 11245667899999998888888777777776653321 1111111 02347
Q ss_pred eEEEecCC-CCEEEEEeCCCcEEEEEcCCCceeee
Q 019405 305 RSIARHPT-LPIIASCGLDSYLRFWDIKTRQLLSA 338 (341)
Q Consensus 305 ~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~ 338 (341)
.++.|++. +.+|+-+.+++.+.-.|.. |..+..
T Consensus 236 Sgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~ 269 (316)
T COG3204 236 SGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIEL 269 (316)
T ss_pred ccceecCCCCcEEEEecCCceEEEEecC-CCeeee
Confidence 77888874 4466666677777777765 444433
No 380
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.00 E-value=0.083 Score=42.19 Aligned_cols=148 Identities=18% Similarity=0.152 Sum_probs=95.5
Q ss_pred ceEEEEecCCCC-EEEEeeCCCe-EEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCC-----
Q 019405 164 TIAFSKVDISEK-FSLFGGKGVE-VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND----- 236 (341)
Q Consensus 164 ~i~~~~~~~~~~-~l~~~~~d~~-v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d----- 236 (341)
....++++|... -++.+-.-|+ ..++|....+....+...+... ..-.=.| +++|.+|...-+|
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RH-------fyGHGvf--s~dG~~LYATEndfd~~r 139 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRH-------FYGHGVF--SPDGRLLYATENDFDPNR 139 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCce-------eeccccc--CCCCcEEEeecCCCCCCC
Confidence 344567777543 3445555554 5688888777665554443221 1122256 8999999886554
Q ss_pred CeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeC------------------CCCEEEEECCCCeEEeEEec
Q 019405 237 HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG------------------SGDLASVDIRTGKLLGCFIG 298 (341)
Q Consensus 237 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~------------------dg~i~iwd~~~~~~~~~~~~ 298 (341)
|.|-+||.+..-+.+-.+..|.-.-..+.+.+||+.++.+.. .-++.+.|..+|+++.+..-
T Consensus 140 GViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~L 219 (366)
T COG3490 140 GVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTL 219 (366)
T ss_pred ceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccC
Confidence 789999998755556677777777788999999999887653 12355566666766543321
Q ss_pred c---ccCceeEEEecCCCCEEEEEe
Q 019405 299 K---CSGSIRSIARHPTLPIIASCG 320 (341)
Q Consensus 299 ~---~~~~i~~~~~~~~~~~l~s~~ 320 (341)
. +.-.|..++..+||..++.+-
T Consensus 220 p~~l~~lSiRHld~g~dgtvwfgcQ 244 (366)
T COG3490 220 PASLRQLSIRHLDIGRDGTVWFGCQ 244 (366)
T ss_pred chhhhhcceeeeeeCCCCcEEEEEE
Confidence 1 245788888888887766553
No 381
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.97 E-value=0.013 Score=55.21 Aligned_cols=158 Identities=15% Similarity=0.116 Sum_probs=95.6
Q ss_pred EeecCCceEEEEecCCCCEEEEee--CCCeEEEEECCCCceeee--cCCCCCCccCccCCeeeeEEEEEecCCCCEEEEE
Q 019405 158 NVCASGTIAFSKVDISEKFSLFGG--KGVEVNVWDLDKCEKIWT--AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG 233 (341)
Q Consensus 158 ~~~~~~~i~~~~~~~~~~~l~~~~--~d~~v~i~d~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 233 (341)
.+...-++..+...+|+...++.. .+-.|..||+++-..... ..................++.|.|.+-. ..+..
T Consensus 96 ~v~k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~-n~av~ 174 (1405)
T KOG3630|consen 96 KVEKEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPL-NSAVD 174 (1405)
T ss_pred eeeccccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccc-hhhhh
Confidence 333344666677777876555433 344789999976322110 1111111112223345667788533322 34566
Q ss_pred eCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEec---cccCceeEEEec
Q 019405 234 TNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG---KCSGSIRSIARH 310 (341)
Q Consensus 234 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~---~~~~~i~~~~~~ 310 (341)
..|+.|++..+......+..+. -....++++|+|.|+.+++|...|++.-|... ++....+.. .....|.+|+|-
T Consensus 175 l~dlsl~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl 252 (1405)
T KOG3630|consen 175 LSDLSLRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWL 252 (1405)
T ss_pred ccccchhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEe
Confidence 7789999887765443334433 33568999999999999999999999988653 443333332 213679999998
Q ss_pred CCCCEEEE
Q 019405 311 PTLPIIAS 318 (341)
Q Consensus 311 ~~~~~l~s 318 (341)
....+++.
T Consensus 253 ~t~eflvv 260 (1405)
T KOG3630|consen 253 STQEFLVV 260 (1405)
T ss_pred cceeEEEE
Confidence 87776654
No 382
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.86 E-value=0.0068 Score=46.42 Aligned_cols=107 Identities=8% Similarity=-0.030 Sum_probs=66.1
Q ss_pred CCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeE
Q 019405 173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM 252 (341)
Q Consensus 173 ~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 252 (341)
-+..+++|+.+|.|.+|+....-.......... ..|.+.--. -.++.+..+++.|+.|+.|++.-.+. +-
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~--------e~i~~~Ip~-~~~~~~~c~~~~dg~ir~~n~~p~k~-~g 138 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGE--------ESIDLGIPN-GRDSSLGCVGAQDGRIRACNIKPNKV-LG 138 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhccc--------ccceecccc-ccccceeEEeccCCceeeeccccCce-ee
Confidence 356788999999999998862111111111111 112221110 33556888999999999999987654 44
Q ss_pred EEEecC-CCeEEEEEcCCCceEEEE--eCCCCEEEEECCC
Q 019405 253 SFDFRE-TPIKAVAEEPDSFNIYIG--NGSGDLASVDIRT 289 (341)
Q Consensus 253 ~~~~~~-~~v~~~~~~~~~~~l~~g--~~dg~i~iwd~~~ 289 (341)
....|+ .++.....+..++.++.. +.|..++.|++..
T Consensus 139 ~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 139 YVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 445565 555555555666677766 7777777777653
No 383
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.82 E-value=0.0074 Score=56.30 Aligned_cols=98 Identities=16% Similarity=0.137 Sum_probs=71.9
Q ss_pred CCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeE
Q 019405 173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM 252 (341)
Q Consensus 173 ~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 252 (341)
.+..++.|+..|.+...|+...-. .-..+.. ...+|++++| +.+|.+++.|-.+|.|.+||+..++ +++
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~-~~~~ne~-------v~~~Vtsvaf--n~dg~~l~~G~~~G~V~v~D~~~~k-~l~ 166 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLG-PLHQNER-------VQGPVTSVAF--NQDGSLLLAGLGDGHVTVWDMHRAK-ILK 166 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccc-hhhcCCc-------cCCcceeeEe--cCCCceeccccCCCcEEEEEccCCc-cee
Confidence 455788899999999988865311 1111111 1267999999 8999999999999999999999865 488
Q ss_pred EEEecCCCeEEEEE---cCCCceEEEEeCCCC
Q 019405 253 SFDFRETPIKAVAE---EPDSFNIYIGNGSGD 281 (341)
Q Consensus 253 ~~~~~~~~v~~~~~---~~~~~~l~~g~~dg~ 281 (341)
.+..|..+.+.+-+ ..++..++++...|.
T Consensus 167 ~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 167 VITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred eeeecCCccceEEEEEEeCCCcEEEEccCCCc
Confidence 88888777666543 445567888887776
No 384
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.78 E-value=0.33 Score=44.29 Aligned_cols=146 Identities=17% Similarity=0.177 Sum_probs=77.5
Q ss_pred CCCEEEEeeCCCe-----EEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCC------eEEE
Q 019405 173 SEKFSLFGGKGVE-----VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH------QVRL 241 (341)
Q Consensus 173 ~~~~l~~~~~d~~-----v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~------~i~i 241 (341)
+|.+.++||.||. +-.||.++.+-........ .......+.+ ++.+.++|+.++ ++..
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-------~r~~~gv~~~----~g~iYi~GG~~~~~~~l~sve~ 448 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-------RRSGHGVAVL----GGKLYIIGGGDGSSNCLNSVEC 448 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCcccccCCCCc-------ceeeeEEEEE----CCEEEEEcCcCCCccccceEEE
Confidence 5778888888864 6667766543211111110 0122233333 677888887554 4677
Q ss_pred EEcCCCCc-eeEEEEecCCCeEEEEEcCCCceEEEEeCCCC-----EEEEECCCCeEEeE--EeccccCceeEEEecCCC
Q 019405 242 YDTSAQRR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGD-----LASVDIRTGKLLGC--FIGKCSGSIRSIARHPTL 313 (341)
Q Consensus 242 wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~-----i~iwd~~~~~~~~~--~~~~~~~~i~~~~~~~~~ 313 (341)
||..+..- .+..+........ ++. -++.+.+.|+.|+. |..||.++.+.... +... ...+.... -++
T Consensus 449 YDP~t~~W~~~~~M~~~R~~~g-~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~-rs~~g~~~--~~~ 523 (571)
T KOG4441|consen 449 YDPETNTWTLIAPMNTRRSGFG-VAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSP-RSAVGVVV--LGG 523 (571)
T ss_pred EcCCCCceeecCCcccccccce-EEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccc-cccccEEE--ECC
Confidence 87776431 1111111111111 222 25677788887763 78899887765433 2211 22222222 266
Q ss_pred CEEEEEeCCC-----cEEEEEcCCCc
Q 019405 314 PIIASCGLDS-----YLRFWDIKTRQ 334 (341)
Q Consensus 314 ~~l~s~~~dg-----~v~iwd~~~~~ 334 (341)
...+.|+.|| +|..||..+.+
T Consensus 524 ~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 524 KLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred EEEEEecccCccccceeEEcCCCCCc
Confidence 7778888876 56777776643
No 385
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.72 E-value=0.25 Score=40.45 Aligned_cols=256 Identities=13% Similarity=0.044 Sum_probs=128.6
Q ss_pred cCCCCCceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcch
Q 019405 9 CPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR 88 (341)
Q Consensus 9 ~~~~~~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 88 (341)
|+..-.-+++.|.++| +.++++... .+..+. . +..++.-+...++.. .|++ -.|+.+.++++..-...
T Consensus 2 c~~~~~~~L~vGt~~G-l~~~~~~~~-~~~~~i---~--~~~~I~ql~vl~~~~----~llv-Lsd~~l~~~~L~~l~~~ 69 (275)
T PF00780_consen 2 CADSWGDRLLVGTEDG-LYVYDLSDP-SKPTRI---L--KLSSITQLSVLPELN----LLLV-LSDGQLYVYDLDSLEPV 69 (275)
T ss_pred CcccCCCEEEEEECCC-EEEEEecCC-ccceeE---e--ecceEEEEEEecccC----EEEE-EcCCccEEEEchhhccc
Confidence 3444556788999999 777777222 121111 1 222366666666555 3333 34699999998764433
Q ss_pred heeec-cCCCC--CCCCCCceeeEeeee-ccccccccccceeEEEcccceeEEEEeeecccccccCC-ceEEEEEeecCC
Q 019405 89 VAISN-AGDSG--AQPEDDGIVGLHLFK-RQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSC-STVKSWNVCASG 163 (341)
Q Consensus 89 ~~~~~-~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~-~~v~~~~~~~~~ 163 (341)
..... ..+.. ....-........+. .... .....+.......+.+|....... .. ...+.+.. ..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~----~~~~~L~va~kk~i~i~~~~~~~~----~f~~~~ke~~l--p~ 139 (275)
T PF00780_consen 70 STSAPLAFPKSRSLPTKLPETKGVSFFAVNGGH----EGSRRLCVAVKKKILIYEWNDPRN----SFSKLLKEISL--PD 139 (275)
T ss_pred cccccccccccccccccccccCCeeEEeecccc----ccceEEEEEECCEEEEEEEECCcc----cccceeEEEEc--CC
Confidence 31110 00000 000001111222222 1110 111344444455888888765311 11 23444443 46
Q ss_pred ceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCc---cCccCCeeeeEEEEEecCCCCEEEEEeCCCeEE
Q 019405 164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNS---LGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVR 240 (341)
Q Consensus 164 ~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~ 240 (341)
.+..++|. ++.++.|..+ ...+.|+.++....-+....... .......++..+.. +++.+|++- |..-.
T Consensus 140 ~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~e~Ll~~--~~~g~ 211 (275)
T PF00780_consen 140 PPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL---SDNEFLLCY--DNIGV 211 (275)
T ss_pred CcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe---CCceEEEEe--cceEE
Confidence 78888887 5677777665 58889998766544332211110 00001122333333 345565543 33334
Q ss_pred EEEcCCCCcee-EEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEecc
Q 019405 241 LYDTSAQRRPV-MSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK 299 (341)
Q Consensus 241 iwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 299 (341)
..|.. ++... ..+... ....++++. ..+|++-.. +.|.||++.++++++.+...
T Consensus 212 fv~~~-G~~~r~~~i~W~-~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 212 FVNKN-GEPSRKSTIQWS-SAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred EEcCC-CCcCcccEEEcC-CchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEECC
Confidence 44443 33212 344433 345566663 336666554 56999999999999988754
No 386
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.68 E-value=0.34 Score=41.43 Aligned_cols=150 Identities=14% Similarity=0.136 Sum_probs=76.3
Q ss_pred eEEEEecCCCCEEEEee--CC---CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeE
Q 019405 165 IAFSKVDISEKFSLFGG--KG---VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239 (341)
Q Consensus 165 i~~~~~~~~~~~l~~~~--~d---~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i 239 (341)
+..+.|.++++.++..- .+ -.+.+.|..+++...........-+.. .....|....+..+|.....+|.-
T Consensus 186 l~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~-----~~~~~~~~~~~~~~l~~s~~~G~~ 260 (353)
T PF00930_consen 186 LTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDV-----YDPPHFLGPDGNEFLWISERDGYR 260 (353)
T ss_dssp EEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSS-----SSEEEE-TTTSSEEEEEEETTSSE
T ss_pred cccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceee-----ecccccccCCCCEEEEEEEcCCCc
Confidence 66778888887444322 22 236677777665443332222111111 123344102334455555577765
Q ss_pred EEEEcCCCCceeEEEEecCCCeEE-EEEcCCCceEE-EEeCC----CCEEEEECCCCeEEeEEeccccCceeEEEecCCC
Q 019405 240 RLYDTSAQRRPVMSFDFRETPIKA-VAEEPDSFNIY-IGNGS----GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL 313 (341)
Q Consensus 240 ~iwd~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~-~g~~d----g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~ 313 (341)
+||-+.......+.+....-.|.. +.+++++..|+ ++..+ ..|+.-++..+..+..+... .+.-..+.|+|++
T Consensus 261 hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~-~~~~~~~~~Spdg 339 (353)
T PF00930_consen 261 HLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCE-DGDHYSASFSPDG 339 (353)
T ss_dssp EEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTT-SSTTEEEEE-TTS
T ss_pred EEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCC-CCCceEEEECCCC
Confidence 555444322224556656666755 67888776554 55543 24666677723333445433 2222689999999
Q ss_pred CEEEEEe
Q 019405 314 PIIASCG 320 (341)
Q Consensus 314 ~~l~s~~ 320 (341)
++++-..
T Consensus 340 ~y~v~~~ 346 (353)
T PF00930_consen 340 KYYVDTY 346 (353)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 9776543
No 387
>PHA02713 hypothetical protein; Provisional
Probab=96.56 E-value=0.59 Score=42.66 Aligned_cols=146 Identities=11% Similarity=0.107 Sum_probs=75.8
Q ss_pred CCCEEEEeeCCC-----eEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCC----------
Q 019405 173 SEKFSLFGGKGV-----EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH---------- 237 (341)
Q Consensus 173 ~~~~l~~~~~d~-----~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~---------- 237 (341)
+++..+.||.++ .+..||..+.+=.. +....... .....+.+ ++...+.|+.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~-~~~mp~~r------~~~~~~~~----~g~IYviGG~~~~~~~~~~~~~ 419 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKM-LPDMPIAL------SSYGMCVL----DQYIYIIGGRTEHIDYTSVHHM 419 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEE-CCCCCccc------ccccEEEE----CCEEEEEeCCCccccccccccc
Confidence 567777787653 47889987653211 11111000 11122233 677777777542
Q ss_pred -------------eEEEEEcCCCCc-eeEEEEecCCCeEEEEEcCCCceEEEEeCC------CCEEEEECCC-CeE--Ee
Q 019405 238 -------------QVRLYDTSAQRR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGS------GDLASVDIRT-GKL--LG 294 (341)
Q Consensus 238 -------------~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d------g~i~iwd~~~-~~~--~~ 294 (341)
.+..||..+.+= .+..+....... +++ .-+++..+.|+.+ ..+..||..+ .+. +.
T Consensus 420 ~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~-~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~ 497 (557)
T PHA02713 420 NSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRP-GVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELIT 497 (557)
T ss_pred ccccccccccccceEEEECCCCCeEeecCCCCcccccC-cEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcc
Confidence 466777765321 011111111111 122 2256666777654 2467899887 443 34
Q ss_pred EEeccccCceeEEEecCCCCEEEEEeCCC--cEEEEEcCCCc
Q 019405 295 CFIGKCSGSIRSIARHPTLPIIASCGLDS--YLRFWDIKTRQ 334 (341)
Q Consensus 295 ~~~~~~~~~i~~~~~~~~~~~l~s~~~dg--~v~iwd~~~~~ 334 (341)
.++.. ......+++ ++.+.+.|+.|+ .+..||+.+.+
T Consensus 498 ~m~~~-r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 498 TTESR-LSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred ccCcc-cccceeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence 44332 222222233 778889999888 78888887754
No 388
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.46 E-value=0.5 Score=43.06 Aligned_cols=114 Identities=15% Similarity=0.140 Sum_probs=74.2
Q ss_pred eEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEc
Q 019405 165 IAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDT 244 (341)
Q Consensus 165 i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~ 244 (341)
...+.-+.-++..++-+....+.|||.+.+....+-.-. ..+.|..+.|.+.|+++.+++.+..+.|.+|--
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~--------~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFS--------EDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeec--------CCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 334444444555555555668999999887644332221 125599999988899999999999999999853
Q ss_pred CC----CC----ceeEEE--EecC-CCeEEEEEcCCCceEEEEeCCCCEEEEECC
Q 019405 245 SA----QR----RPVMSF--DFRE-TPIKAVAEEPDSFNIYIGNGSGDLASVDIR 288 (341)
Q Consensus 245 ~~----~~----~~~~~~--~~~~-~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~ 288 (341)
.. .. .+++.+ ..++ .+|.+..|.++|.+++.+ ++.+.|+|-.
T Consensus 104 ~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 104 LRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDKW 156 (631)
T ss_pred cchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECCC
Confidence 21 01 123332 2333 579999999999655543 4568888643
No 389
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.41 E-value=0.23 Score=45.14 Aligned_cols=130 Identities=15% Similarity=0.095 Sum_probs=75.3
Q ss_pred eccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccccccc
Q 019405 44 RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS 123 (341)
Q Consensus 44 ~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (341)
++...-.....+..|.-.. .-++-+....+.|||...+....+-.. ...+.|..+.|.......
T Consensus 24 ~~~T~i~~~~li~gss~~k----~a~V~~~~~~LtIWD~~~~~lE~~~~f-------~~~~~I~dLDWtst~d~q----- 87 (631)
T PF12234_consen 24 TFETGISNPSLISGSSIKK----IAVVDSSRSELTIWDTRSGVLEYEESF-------SEDDPIRDLDWTSTPDGQ----- 87 (631)
T ss_pred EEecCCCCcceEeecccCc----EEEEECCCCEEEEEEcCCcEEEEeeee-------cCCCceeeceeeecCCCC-----
Confidence 3333333444444444333 333334455699999987663222221 245889999998765532
Q ss_pred ceeEEEcccceeEEEEee-ecccccccCCceEEEEEee--cCCceEEEEecCCCCEEEEeeCCCeEEEEECC
Q 019405 124 RTLLTCTTKGKASMRSIE-VTKVSAESSCSTVKSWNVC--ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLD 192 (341)
Q Consensus 124 ~~l~~~~~~g~~~i~~~~-~~~~~~~~~~~~v~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~ 192 (341)
.+++.+..+.+.++.-. ..-...+..-..++..++. +..+|....|-++|.+++.+ ++.+.|+|-.
T Consensus 88 -siLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 88 -SILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDKW 156 (631)
T ss_pred -EEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECCC
Confidence 77888888888888632 1111111122345555443 34678899999988776644 3578888743
No 390
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.31 E-value=0.13 Score=46.96 Aligned_cols=102 Identities=14% Similarity=0.050 Sum_probs=62.3
Q ss_pred eeeEEEEEecCCCCEEEEEe------CCC--eEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCC-------
Q 019405 215 WFTSAAFLSIDDHRKFVAGT------NDH--QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS------- 279 (341)
Q Consensus 215 ~v~~~~~~~~~~~~~l~~~~------~d~--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d------- 279 (341)
.+...++ +|+++.++... .|. .|.+++.. ... ..+... ...+.-.|+|+|..|++....
T Consensus 351 ~vsspai--SpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g--g~~-~~lt~g-~~~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 351 NITSAAL--SRSGRQVAAVVTLGRGAPDPASSLWVGPLG--GVA-VQVLEG-HSLTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred CcccceE--CCCCCEEEEEEeecCCCCCcceEEEEEeCC--Ccc-eeeecC-CCCCCceECCCCCceEEEecCcceEEEe
Confidence 3667778 88999887655 243 45555542 222 223222 247788999998877766432
Q ss_pred -----CCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEE
Q 019405 280 -----GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRF 327 (341)
Q Consensus 280 -----g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~i 327 (341)
+.+.+.++..++... .. .+.|..+.|+|||..++... ++.|++
T Consensus 425 ~~~~~gql~~~~vd~ge~~~---~~-~g~Issl~wSpDG~RiA~i~-~g~v~V 472 (591)
T PRK13616 425 RDPATGQLARTPVDASAVAS---RV-PGPISELQLSRDGVRAAMII-GGKVYL 472 (591)
T ss_pred ccCCCceEEEEeccCchhhh---cc-CCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence 233333444333322 11 45799999999999877665 467776
No 391
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.25 E-value=0.73 Score=40.41 Aligned_cols=111 Identities=20% Similarity=0.288 Sum_probs=69.3
Q ss_pred EEEecCCCCEEEEe-eCC----CeEEEEECCCCceeeec-CCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCC---
Q 019405 167 FSKVDISEKFSLFG-GKG----VEVNVWDLDKCEKIWTA-KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH--- 237 (341)
Q Consensus 167 ~~~~~~~~~~l~~~-~~d----~~v~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~--- 237 (341)
...++|++++++.+ +.. ..|+++|+++++.+... .. .....+.| .++++.|+....+.
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-----------~~~~~~~W--~~d~~~~~y~~~~~~~~ 194 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-----------PKFSSVSW--SDDGKGFFYTRFDEDQR 194 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-----------EESEEEEE--CTTSSEEEEEECSTTTS
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-----------cccceEEE--eCCCCEEEEEEeCcccc
Confidence 56789999988854 222 35999999999766432 21 11223889 77877665544332
Q ss_pred --------eEEEEEcCCCCce-eEEEEecCCC--eEEEEEcCCCceEEEEeCC----CCEEEEECCCC
Q 019405 238 --------QVRLYDTSAQRRP-VMSFDFRETP--IKAVAEEPDSFNIYIGNGS----GDLASVDIRTG 290 (341)
Q Consensus 238 --------~i~iwd~~~~~~~-~~~~~~~~~~--v~~~~~~~~~~~l~~g~~d----g~i~iwd~~~~ 290 (341)
.|+.|.+.+.... ...+...... ...+..++++++|+..... ..+++.|+..+
T Consensus 195 ~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 195 TSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp S-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred cccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 3788887765432 3444443333 5678899999988764432 35888888874
No 392
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.22 E-value=0.5 Score=38.20 Aligned_cols=144 Identities=11% Similarity=0.068 Sum_probs=84.2
Q ss_pred ceEEEEecCCCCEEEEee---CCCeEEEEECCCCceeeec-CCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeE
Q 019405 164 TIAFSKVDISEKFSLFGG---KGVEVNVWDLDKCEKIWTA-KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239 (341)
Q Consensus 164 ~i~~~~~~~~~~~l~~~~---~d~~v~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i 239 (341)
.+...+++++++.++... ....++++.... ..... .. ..+....| ++++...+....+...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~--~~~~~~~g-----------~~l~~PS~--d~~g~~W~v~~~~~~~ 89 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG--PVRPVLTG-----------GSLTRPSW--DPDGWVWTVDDGSGGV 89 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC--cceeeccC-----------Cccccccc--cCCCCEEEEEcCCCce
Confidence 577889999998877655 333455555432 22221 21 12556677 7787766666666666
Q ss_pred EEEE-cCCCCceeEEEEec-C-CCeEEEEEcCCCceEEEEe---CCCCEEEEECC---CC------eEEeEEeccccCce
Q 019405 240 RLYD-TSAQRRPVMSFDFR-E-TPIKAVAEEPDSFNIYIGN---GSGDLASVDIR---TG------KLLGCFIGKCSGSI 304 (341)
Q Consensus 240 ~iwd-~~~~~~~~~~~~~~-~-~~v~~~~~~~~~~~l~~g~---~dg~i~iwd~~---~~------~~~~~~~~~~~~~i 304 (341)
+++. ...+.......... . ..|..+++||||..++.-. .++.|.+--+. .+ ..+...... ...+
T Consensus 90 ~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~-~~~v 168 (253)
T PF10647_consen 90 RVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPL-LSDV 168 (253)
T ss_pred EEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccc-cCcc
Confidence 6663 23332212222221 1 2899999999998776554 34667766443 22 111112122 4588
Q ss_pred eEEEecCCCCEEEEEeCCC
Q 019405 305 RSIARHPTLPIIASCGLDS 323 (341)
Q Consensus 305 ~~~~~~~~~~~l~s~~~dg 323 (341)
..+.|.+++.+++.+...+
T Consensus 169 ~~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 169 TDVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred eeeeecCCCEEEEEeCCCC
Confidence 9999999998776665443
No 393
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.13 E-value=1.3 Score=42.00 Aligned_cols=65 Identities=14% Similarity=0.142 Sum_probs=40.4
Q ss_pred CCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCC---EEEEEeCCCeEEEEEcCCCC
Q 019405 183 GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR---KFVAGTNDHQVRLYDTSAQR 248 (341)
Q Consensus 183 d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~l~~~~~d~~i~iwd~~~~~ 248 (341)
.+.|.-.|.++|+..+.++....+..+..-+....-+.+. ..+++ .++.++.+|.+.++|.++++
T Consensus 413 ~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~-~~~G~~~~~v~~~~K~G~~~vlDr~tG~ 480 (764)
T TIGR03074 413 SSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLP-DADGTTVPALVAPTKQGQIYVLDRRTGE 480 (764)
T ss_pred cceEEEEeCCCCceEEEecccCCccccccccCCceEEeee-cCCCcEeeEEEEECCCCEEEEEECCCCC
Confidence 3568888999999999887644332222111212222220 12442 78889999999999988765
No 394
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=96.04 E-value=1.2 Score=41.12 Aligned_cols=155 Identities=12% Similarity=0.085 Sum_probs=91.6
Q ss_pred CCEEEEeeCCCeEEEEECCCCceee------ecCC-CCCC----c--cCccCCeeeeEEEEEecCCCCEEEEEeCCCeEE
Q 019405 174 EKFSLFGGKGVEVNVWDLDKCEKIW------TAKP-PPKN----S--LGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVR 240 (341)
Q Consensus 174 ~~~l~~~~~d~~v~i~d~~~~~~~~------~~~~-~~~~----~--~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~ 240 (341)
.++++++. .+.|.||+++...... .+.. +... . .....+..|+.+....=-+...|+.+..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 56666655 5689999986432211 1110 0000 0 000023335555441113456788999999999
Q ss_pred EEEcCC-------C----C--------ceeEEEEecCCCeEEEEEc--CCCceEEEEeCCCCEEEEECCC--CeEEeEEe
Q 019405 241 LYDTSA-------Q----R--------RPVMSFDFRETPIKAVAEE--PDSFNIYIGNGSGDLASVDIRT--GKLLGCFI 297 (341)
Q Consensus 241 iwd~~~-------~----~--------~~~~~~~~~~~~v~~~~~~--~~~~~l~~g~~dg~i~iwd~~~--~~~~~~~~ 297 (341)
+|.... . . .|...+. -...+++++++ ...++||+++....|.||-... .+....-.
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s 206 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPS 206 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccc
Confidence 997532 0 0 1222222 23478999998 7888999999988888875543 11111101
Q ss_pred ccccCceeEEEecCCC---C---EEEEEeCCCcEEEEEc
Q 019405 298 GKCSGSIRSIARHPTL---P---IIASCGLDSYLRFWDI 330 (341)
Q Consensus 298 ~~~~~~i~~~~~~~~~---~---~l~s~~~dg~v~iwd~ 330 (341)
..+...|.+|.|-++. . .|++++-.|.+.+|++
T Consensus 207 ~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 207 HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 1125689999998743 2 7888999999999887
No 395
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.98 E-value=1.2 Score=40.66 Aligned_cols=225 Identities=15% Similarity=0.170 Sum_probs=107.3
Q ss_pred eEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccC------CeEEEeeCCCCcchheeeccCCCCC
Q 019405 26 IKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKN------GLTDILNPLNGDLRVAISNAGDSGA 99 (341)
Q Consensus 26 i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~~~~~~ 99 (341)
...++..+...+.|.....+..... ...+++- .+ .+.++|+.| .++..||..+++....-...
T Consensus 300 ~~~ve~yd~~~~~w~~~a~m~~~r~-~~~~~~~-~~----~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~----- 368 (571)
T KOG4441|consen 300 LRSVECYDPKTNEWSSLAPMPSPRC-RVGVAVL-NG----KLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMN----- 368 (571)
T ss_pred cceeEEecCCcCcEeecCCCCcccc-cccEEEE-CC----EEEEEccccCCCcccceEEEecCCCCceeccCCcc-----
Confidence 3555566655566655544433222 2223322 22 368888888 45788888877643321111
Q ss_pred CCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCc--eEEE-EecCCCCE
Q 019405 100 QPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGT--IAFS-KVDISEKF 176 (341)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~--i~~~-~~~~~~~~ 176 (341)
....-..+... .+ ...+.|+.||.-.+-+++.- |-....|....... .... ...-++.+
T Consensus 369 --~~R~~~~v~~l--~g-------~iYavGG~dg~~~l~svE~Y-------Dp~~~~W~~va~m~~~r~~~gv~~~~g~i 430 (571)
T KOG4441|consen 369 --TKRSDFGVAVL--DG-------KLYAVGGFDGEKSLNSVECY-------DPVTNKWTPVAPMLTRRSGHGVAVLGGKL 430 (571)
T ss_pred --CccccceeEEE--CC-------EEEEEeccccccccccEEEe-------cCCCCcccccCCCCcceeeeEEEEECCEE
Confidence 00111111111 11 16777777766554443321 11223343322111 1111 11225777
Q ss_pred EEEeeCCC------eEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCC-----eEEEEEcC
Q 019405 177 SLFGGKGV------EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH-----QVRLYDTS 245 (341)
Q Consensus 177 l~~~~~d~------~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~-----~i~iwd~~ 245 (341)
.++||.++ .+..||..+.+-...-+-... ..... ++. -++.+.+.|+.|+ +|..||..
T Consensus 431 Yi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~-------R~~~g-~a~---~~~~iYvvGG~~~~~~~~~VE~ydp~ 499 (571)
T KOG4441|consen 431 YIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTR-------RSGFG-VAV---LNGKIYVVGGFDGTSALSSVERYDPE 499 (571)
T ss_pred EEEcCcCCCccccceEEEEcCCCCceeecCCcccc-------cccce-EEE---ECCEEEEECCccCCCccceEEEEcCC
Confidence 77777544 467888776543221111110 01122 333 2677888888776 36778877
Q ss_pred CCCc-eeEEEEecCCCeEEEEEcCCCceEEEEeCCCC-----EEEEECCCCeE
Q 019405 246 AQRR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGD-----LASVDIRTGKL 292 (341)
Q Consensus 246 ~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~-----i~iwd~~~~~~ 292 (341)
+.+= .+..+......+....+ ++...++|+.||. |..||..+.+.
T Consensus 500 ~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~W 550 (571)
T KOG4441|consen 500 TNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDTW 550 (571)
T ss_pred CCceeEcccCccccccccEEEE--CCEEEEEecccCccccceeEEcCCCCCce
Confidence 6431 11112212222222222 5667778887754 66777766543
No 396
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.96 E-value=1 Score=39.49 Aligned_cols=241 Identities=10% Similarity=0.026 Sum_probs=117.4
Q ss_pred CCCCCceEEEE-ccC----CeEEEeeCCCCcchhee-eccCCCCCCCCCCceeeEeeeeccccccccccceeEEEccc--
Q 019405 61 DSQNDPLLAVA-RKN----GLTDILNPLNGDLRVAI-SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK-- 132 (341)
Q Consensus 61 ~~~~~~~l~~~-~~d----g~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 132 (341)
.+|++++||.+ +.. ..|+++|+++++.+... .. .....+.|.+.+.. .+.+...+
T Consensus 131 ~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~----------~~~~~~~W~~d~~~-------~~y~~~~~~~ 193 (414)
T PF02897_consen 131 VSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN----------PKFSSVSWSDDGKG-------FFYTRFDEDQ 193 (414)
T ss_dssp ETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE----------EESEEEEECTTSSE-------EEEEECSTTT
T ss_pred ECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc----------cccceEEEeCCCCE-------EEEEEeCccc
Confidence 35556687764 333 34999999998765432 21 11112455544331 23333222
Q ss_pred --------ceeEEEEeeecccccccCCceEEEEEeecCCc-eEEEEecCCCCEEEEeeC---C-CeEEEEECCCC----c
Q 019405 133 --------GKASMRSIEVTKVSAESSCSTVKSWNVCASGT-IAFSKVDISEKFSLFGGK---G-VEVNVWDLDKC----E 195 (341)
Q Consensus 133 --------g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~-i~~~~~~~~~~~l~~~~~---d-~~v~i~d~~~~----~ 195 (341)
..+..|.+.... ..-..+|....... ...+..++++++++.... + ..+.+.|+..+ .
T Consensus 194 ~~~~~~~~~~v~~~~~gt~~------~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~ 267 (414)
T PF02897_consen 194 RTSDSGYPRQVYRHKLGTPQ------SEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDA 267 (414)
T ss_dssp SS-CCGCCEEEEEEETTS-G------GG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-
T ss_pred ccccCCCCcEEEEEECCCCh------HhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcC
Confidence 223444432221 11245665544444 667888999998775332 2 45888888764 1
Q ss_pred eeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEe---CCCeEEEEEcCCCCc--eeEEEEecCCCeEEEEEcCCC
Q 019405 196 KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT---NDHQVRLYDTSAQRR--PVMSFDFRETPIKAVAEEPDS 270 (341)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~ 270 (341)
....+.... ......+.. . ++.+++... .++.|...++..... ....+..+...+.-..+...+
T Consensus 268 ~~~~l~~~~--------~~~~~~v~~--~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~ 336 (414)
T PF02897_consen 268 KPKLLSPRE--------DGVEYYVDH--H-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFK 336 (414)
T ss_dssp SEEEEEESS--------SS-EEEEEE--E-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEET
T ss_pred CcEEEeCCC--------CceEEEEEc--c-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEEC
Confidence 122221111 011223333 2 333443332 235677777776542 122444455533333333334
Q ss_pred ceEEE-EeCCC--CEEEEECCCCeEEeEEeccccCceeEEEecCCCCE--EEEEeC--CCcEEEEEcCCCce
Q 019405 271 FNIYI-GNGSG--DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPI--IASCGL--DSYLRFWDIKTRQL 335 (341)
Q Consensus 271 ~~l~~-g~~dg--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--l~s~~~--dg~v~iwd~~~~~~ 335 (341)
.+|+. ...++ .|+++++..+.....+.....+.|..+...+++.. +...|. -+++..||+.+++.
T Consensus 337 ~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 337 DYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp TEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred CEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 44544 44443 48899998455555555443556777776666663 223332 25788899998875
No 397
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.96 E-value=0.0059 Score=55.94 Aligned_cols=147 Identities=16% Similarity=0.137 Sum_probs=86.1
Q ss_pred CeEEEEECC--CCceeeecCCCCCCccCccCCeeeeEEEEEe-cCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCC
Q 019405 184 VEVNVWDLD--KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS-IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETP 260 (341)
Q Consensus 184 ~~v~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 260 (341)
|.+.+||+. .|+....+..+....++ ..+.-+.|+| -++..++..+-.++.|++.......+ ..+.+|...
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~g----s~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~l~rsHs~~ 226 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYG----SDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR--SLFRSHSQR 226 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCC----CCcceeeecccccccceeeeccCCCceeEeeechHHH--HHHHhcCCC
Confidence 578889876 34433322222211111 2234444432 34556777777888998877765332 233446555
Q ss_pred eEEEE-----------EcCCCceEEEEeCCCCEEEEECC-----CCeEEeEEeccccCceeEEEecCCC---------CE
Q 019405 261 IKAVA-----------EEPDSFNIYIGNGSGDLASVDIR-----TGKLLGCFIGKCSGSIRSIARHPTL---------PI 315 (341)
Q Consensus 261 v~~~~-----------~~~~~~~l~~g~~dg~i~iwd~~-----~~~~~~~~~~~~~~~i~~~~~~~~~---------~~ 315 (341)
+..++ .||||..++.++.||.++.|.+. .-+++..++.|...+-.|.-++.+. .+
T Consensus 227 ~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~ 306 (1283)
T KOG1916|consen 227 VTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVL 306 (1283)
T ss_pred cccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEE
Confidence 54433 58999999999999998877653 3456667777633443333344321 13
Q ss_pred EEEEe-CCCcEEEEEcCCCcee
Q 019405 316 IASCG-LDSYLRFWDIKTRQLL 336 (341)
Q Consensus 316 l~s~~-~dg~v~iwd~~~~~~~ 336 (341)
+++++ .+..+++|....-+|+
T Consensus 307 ~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 307 RITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred EEecccCCcceeEeeccchhhh
Confidence 44444 4567999998887776
No 398
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.95 E-value=0.23 Score=46.33 Aligned_cols=75 Identities=20% Similarity=0.215 Sum_probs=51.5
Q ss_pred CeEEEEEcCCCceEEEEeCCCCEEEEECCC---------CeE--E-eEE-------eccccCceeEEEecCCC---CEEE
Q 019405 260 PIKAVAEEPDSFNIYIGNGSGDLASVDIRT---------GKL--L-GCF-------IGKCSGSIRSIARHPTL---PIIA 317 (341)
Q Consensus 260 ~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~---------~~~--~-~~~-------~~~~~~~i~~~~~~~~~---~~l~ 317 (341)
.|..+.++|+|++|+..+..|...+.=.+. |+. . +++ ..+....|..+.|+|.+ ..|+
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~ 165 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLV 165 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEE
Confidence 578899999999999888766544332221 111 1 111 11224589999999964 6888
Q ss_pred EEeCCCcEEEEEcCCCc
Q 019405 318 SCGLDSYLRFWDIKTRQ 334 (341)
Q Consensus 318 s~~~dg~v~iwd~~~~~ 334 (341)
.-..|+.+|+||+...+
T Consensus 166 vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 166 VLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEecCCEEEEEecCCCC
Confidence 99999999999997543
No 399
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.83 E-value=0.86 Score=39.21 Aligned_cols=144 Identities=13% Similarity=0.037 Sum_probs=76.3
Q ss_pred ceEEEEecCCCCEEEEee-----------CCC-eEEEEECCC--Cc--eeeecCCCCCCccCccCCeeeeEEEEEecCCC
Q 019405 164 TIAFSKVDISEKFSLFGG-----------KGV-EVNVWDLDK--CE--KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH 227 (341)
Q Consensus 164 ~i~~~~~~~~~~~l~~~~-----------~d~-~v~i~d~~~--~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 227 (341)
....++|+++|+++++-. ..+ .|.+++-.+ ++ ....+.... .....+++ .+++
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l---------~~p~Gi~~--~~~G 83 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEEL---------SMVTGLAV--AVGG 83 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCC---------CCccceeE--ecCC
Confidence 445778889988777642 223 677776432 22 112222211 22566787 6677
Q ss_pred CEEEEEeCCCeEEEEEcCCC-----Cc--eeEEEEe----cCCCeEEEEEcCCCceEEEEeC------------------
Q 019405 228 RKFVAGTNDHQVRLYDTSAQ-----RR--PVMSFDF----RETPIKAVAEEPDSFNIYIGNG------------------ 278 (341)
Q Consensus 228 ~~l~~~~~d~~i~iwd~~~~-----~~--~~~~~~~----~~~~v~~~~~~~~~~~l~~g~~------------------ 278 (341)
++ +++.....++.|.... +. .+..+.. +......++|.|+|.+.++-+.
T Consensus 84 -ly-V~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~ 161 (367)
T TIGR02604 84 -VY-VATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQG 161 (367)
T ss_pred -EE-EeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccc
Confidence 44 4444433334354321 11 1111211 1234678999999976554331
Q ss_pred -CCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCC
Q 019405 279 -SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLD 322 (341)
Q Consensus 279 -dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d 322 (341)
.|.|.-+|...++.. .+... -.....++|+|+|.++++-..+
T Consensus 162 ~~g~i~r~~pdg~~~e-~~a~G-~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 162 LGGGLFRYNPDGGKLR-VVAHG-FQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred cCceEEEEecCCCeEE-EEecC-cCCCccceECCCCCEEEEccCC
Confidence 134666666655432 22222 2345789999999887765433
No 400
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.81 E-value=0.5 Score=36.84 Aligned_cols=97 Identities=11% Similarity=0.002 Sum_probs=62.7
Q ss_pred eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCC-----ceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeee
Q 019405 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASG-----TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT 199 (341)
Q Consensus 125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~-----~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~ 199 (341)
....-+.+.++.-|+.+... +.-.++-.++++.... .-..++++.+|++.++.-..++|...|..+|+.+.+
T Consensus 172 fY~iDsln~~V~a~dyd~~t---G~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~e 248 (310)
T KOG4499|consen 172 FYYIDSLNYEVDAYDYDCPT---GDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLE 248 (310)
T ss_pred EEEEccCceEEeeeecCCCc---ccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEE
Confidence 55566667777777754332 1122233345544321 122345566889999999999999999999999999
Q ss_pred cCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEe
Q 019405 200 AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT 234 (341)
Q Consensus 200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 234 (341)
+..+. ..+++++|- .++-..+++.+
T Consensus 249 iklPt---------~qitsccFg-Gkn~d~~yvT~ 273 (310)
T KOG4499|consen 249 IKLPT---------PQITSCCFG-GKNLDILYVTT 273 (310)
T ss_pred EEcCC---------CceEEEEec-CCCccEEEEEe
Confidence 88775 449999994 34444555443
No 401
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=95.78 E-value=2.2 Score=41.90 Aligned_cols=75 Identities=21% Similarity=0.392 Sum_probs=40.4
Q ss_pred ceeecCCCCC---------ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCC
Q 019405 5 TTLECPGCPP---------LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNG 75 (341)
Q Consensus 5 ~~~~~~~~~~---------~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg 75 (341)
..++||.|.. --.++..+||.+.+=+.. .+.+.-......+++..+.......-++|..--||
T Consensus 348 R~veC~~C~G~a~~~~L~aPvala~a~DGSl~VGDfN--------yIRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdg 419 (1899)
T KOG4659|consen 348 RDVECPKCEGKADSISLFAPVALAYAPDGSLIVGDFN--------YIRRISQDGQVSTILTLGLTDTSHSYYIAVSPVDG 419 (1899)
T ss_pred ccccCCCCCCccccceeeceeeEEEcCCCcEEEccch--------heeeecCCCceEEEEEecCCCccceeEEEecCcCc
Confidence 3488999965 125677889988653322 22222122222233333332222233567777788
Q ss_pred eEEEeeCCCCcc
Q 019405 76 LTDILNPLNGDL 87 (341)
Q Consensus 76 ~i~iw~~~~~~~ 87 (341)
++.|=|..+.+.
T Consensus 420 tlyvSdp~s~qv 431 (1899)
T KOG4659|consen 420 TLYVSDPLSKQV 431 (1899)
T ss_pred eEEecCCCcceE
Confidence 888887765443
No 402
>PHA02713 hypothetical protein; Provisional
Probab=95.77 E-value=0.89 Score=41.54 Aligned_cols=72 Identities=8% Similarity=0.047 Sum_probs=42.8
Q ss_pred CCCEEEEEeCC------CeEEEEEcCC-CC-ceeEEEEecCCCeEEEEEcCCCceEEEEeCCC--CEEEEECCCCeEEeE
Q 019405 226 DHRKFVAGTND------HQVRLYDTSA-QR-RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG--DLASVDIRTGKLLGC 295 (341)
Q Consensus 226 ~~~~l~~~~~d------~~i~iwd~~~-~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg--~i~iwd~~~~~~~~~ 295 (341)
++...+.|+.+ ..+..||..+ .+ ..+..+.........+.+ ++++.++|+.++ .+..||+.+.+....
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~ 540 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEWNHI 540 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcccccccch
Confidence 56677777654 2467888876 22 122223222222222333 677888999888 788888888776554
Q ss_pred Eecc
Q 019405 296 FIGK 299 (341)
Q Consensus 296 ~~~~ 299 (341)
...|
T Consensus 541 ~~~~ 544 (557)
T PHA02713 541 CHQH 544 (557)
T ss_pred hhhc
Confidence 4444
No 403
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.76 E-value=0.85 Score=40.60 Aligned_cols=120 Identities=12% Similarity=-0.008 Sum_probs=70.7
Q ss_pred ceEEEEecCC----CCEEEEeeCCCeEEEEECCC-----CceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEe
Q 019405 164 TIAFSKVDIS----EKFSLFGGKGVEVNVWDLDK-----CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT 234 (341)
Q Consensus 164 ~i~~~~~~~~----~~~l~~~~~d~~v~i~d~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 234 (341)
.|..+.|.|- ...+.+.-....|.+|-+.. .+.+..-..+-.+.+ +---..+.| +|....|++-.
T Consensus 58 hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~----pvLpQGCVW--HPk~~iL~VLT 131 (671)
T PF15390_consen 58 HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPF----PVLPQGCVW--HPKKAILTVLT 131 (671)
T ss_pred eeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCc----ccCCCcccc--cCCCceEEEEe
Confidence 5788899873 33444456667899998752 222211111111111 112345678 67787877766
Q ss_pred CCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeC-CCCEEEEECCC
Q 019405 235 NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SGDLASVDIRT 289 (341)
Q Consensus 235 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-dg~i~iwd~~~ 289 (341)
....-.+++++.....++.--...+.|.|.+|.+||+.|+++-. .=.-+|||-..
T Consensus 132 ~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 132 ARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred cCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 65555667776544434332235578999999999977765543 33468888543
No 404
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.75 E-value=1.1 Score=38.16 Aligned_cols=193 Identities=13% Similarity=0.084 Sum_probs=91.3
Q ss_pred eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCC
Q 019405 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP 204 (341)
Q Consensus 125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~ 204 (341)
.|+.+..+|.-.+|.++... +.+....-..+.......++++.+.++..-.+..|+-.|+++.+....+..+.
T Consensus 50 llF~s~~dg~~nly~lDL~t-------~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~ 122 (386)
T PF14583_consen 50 LLFASDFDGNRNLYLLDLAT-------GEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPD 122 (386)
T ss_dssp EEEEE-TTSS-EEEEEETTT--------EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--T
T ss_pred EEEEeccCCCcceEEEEccc-------CEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCc
Confidence 66777778777777765432 22222221111122234556777887765556689999999877654444432
Q ss_pred CCccCccCCeeeeEEEEEecCCCCEEEEEeC----------------------CCeEEEEEcCCCCceeEEEEecCCCeE
Q 019405 205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN----------------------DHQVRLYDTSAQRRPVMSFDFRETPIK 262 (341)
Q Consensus 205 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----------------------d~~i~iwd~~~~~~~~~~~~~~~~~v~ 262 (341)
.++....|..+.++.+++-.-. .+.|...|+.+++ ...+......+.
T Consensus 123 ---------~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~--~~~v~~~~~wlg 191 (386)
T PF14583_consen 123 ---------DWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE--RKVVFEDTDWLG 191 (386)
T ss_dssp ---------TEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT----EEEEEEESS-EE
T ss_pred ---------ccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc--eeEEEecCcccc
Confidence 4455556643556665543211 1235666777765 344444556788
Q ss_pred EEEEcCCCceEEEEeCCCC-----EEEEECCC-CeEEeEEeccc-cCceeEEEecCCCCEEEEE-----eCCCcEEEEEc
Q 019405 263 AVAEEPDSFNIYIGNGSGD-----LASVDIRT-GKLLGCFIGKC-SGSIRSIARHPTLPIIASC-----GLDSYLRFWDI 330 (341)
Q Consensus 263 ~~~~~~~~~~l~~g~~dg~-----i~iwd~~~-~~~~~~~~~~~-~~~i~~~~~~~~~~~l~s~-----~~dg~v~iwd~ 330 (341)
-+.|+|....+++=+.+|- -+||-+++ +.-...+..+. ...+..=-|.|||..|.-- +.+..|.-+|+
T Consensus 192 H~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~ 271 (386)
T PF14583_consen 192 HVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDP 271 (386)
T ss_dssp EEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-T
T ss_pred CcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCC
Confidence 8999997766665544321 35664432 22222222221 2234445688888855432 23446777778
Q ss_pred CCCce
Q 019405 331 KTRQL 335 (341)
Q Consensus 331 ~~~~~ 335 (341)
.+++.
T Consensus 272 ~t~~~ 276 (386)
T PF14583_consen 272 DTGER 276 (386)
T ss_dssp TT--E
T ss_pred CCCCc
Confidence 77654
No 405
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.73 E-value=0.48 Score=40.70 Aligned_cols=136 Identities=10% Similarity=0.082 Sum_probs=83.8
Q ss_pred eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecC-CC
Q 019405 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAK-PP 203 (341)
Q Consensus 125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~-~~ 203 (341)
..+.+...|...=|-+... .+.....++....++|.++.|++|.+.+|+--.+++|.+++....+...... .+
T Consensus 35 kqlfavrSggatgvvvkgp------ndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~c 108 (657)
T KOG2377|consen 35 KQLFAVRSGGATGVVVKGP------NDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQEC 108 (657)
T ss_pred ceEEEEecCCeeEEEEeCC------CCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHh
Confidence 3444444555555554322 2334556677778899999999999999999999999999974322221111 11
Q ss_pred CCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEE
Q 019405 204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIG 276 (341)
Q Consensus 204 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g 276 (341)
.. ....|....| ..+ .-+|..... -+-+|-....++.++..+.|+..|.=..|.++.+.++.+
T Consensus 109 k~------k~~~IlGF~W--~~s-~e~A~i~~~-G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~ 171 (657)
T KOG2377|consen 109 KT------KNANILGFCW--TSS-TEIAFITDQ-GIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLS 171 (657)
T ss_pred cc------CcceeEEEEE--ecC-eeEEEEecC-CeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeee
Confidence 11 1133777788 333 445555433 467777665554466666677777777888877654433
No 406
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.65 E-value=0.98 Score=42.31 Aligned_cols=90 Identities=16% Similarity=0.165 Sum_probs=56.2
Q ss_pred ceEEEEecCCCCEEEEeeCCCeEEEEECCC--C--------ce---eeecCCCCCCccCccCCeeeeEEEEEec-CCCCE
Q 019405 164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDK--C--------EK---IWTAKPPPKNSLGIFTPTWFTSAAFLSI-DDHRK 229 (341)
Q Consensus 164 ~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~--~--------~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~ 229 (341)
.|..+.++|+|.+++..|..|. .|-.+.. + +. .+.+.. ....+.......|..+.|+|. .++..
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v-~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPV-DERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEe-chhhccCCCCceEEEEEEcCCCCCCCe
Confidence 5788999999999999888764 4444321 1 11 011110 001111223356899999653 24678
Q ss_pred EEEEeCCCeEEEEEcCCCCceeEEEE
Q 019405 230 FVAGTNDHQVRLYDTSAQRRPVMSFD 255 (341)
Q Consensus 230 l~~~~~d~~i~iwd~~~~~~~~~~~~ 255 (341)
|++-..|+++|+||+.....|.+.+.
T Consensus 164 l~vLtsdn~lR~y~~~~~~~p~~v~~ 189 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQHPWQVLS 189 (717)
T ss_pred EEEEecCCEEEEEecCCCCCCeEEEE
Confidence 88888999999999987665555443
No 407
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.53 E-value=0.079 Score=28.96 Aligned_cols=32 Identities=16% Similarity=0.269 Sum_probs=26.4
Q ss_pred CceeEEEecCCCC---EEEEEeCCCcEEEEEcCCC
Q 019405 302 GSIRSIARHPTLP---IIASCGLDSYLRFWDIKTR 333 (341)
Q Consensus 302 ~~i~~~~~~~~~~---~l~s~~~dg~v~iwd~~~~ 333 (341)
+.|.++.|+|+.. +|+.+-.-|.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4688999998544 8888888899999999953
No 408
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.15 E-value=0.47 Score=43.73 Aligned_cols=160 Identities=14% Similarity=0.089 Sum_probs=91.0
Q ss_pred eeEEEcccceeEEEEeeeccccc---------------ccCCceEEEEEeecCCceEEEEecC--CCCEEEEeeCCCeEE
Q 019405 125 TLLTCTTKGKASMRSIEVTKVSA---------------ESSCSTVKSWNVCASGTIAFSKVDI--SEKFSLFGGKGVEVN 187 (341)
Q Consensus 125 ~l~~~~~~g~~~i~~~~~~~~~~---------------~~~~~~v~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d~~v~ 187 (341)
.++. +..+.|.||+.+...... ...++.+..|. ....|..+.+.. +...|+.|..||.|.
T Consensus 51 ~LFi-A~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p--~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 51 LLFI-AYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWP--FPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred EEEE-EECCEEEEEecCCcccccccccccccccCccccccccccccCCC--CCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 4444 347889999875433211 11222222222 223455555432 567889999999999
Q ss_pred EEECCCCc-eeeec---------CCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCC--CceeEEEE
Q 019405 188 VWDLDKCE-KIWTA---------KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ--RRPVMSFD 255 (341)
Q Consensus 188 i~d~~~~~-~~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~ 255 (341)
+|.+++-. .+... .......+.......+.+++++.....++||++++...|.||-.... +.....-.
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~ 207 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSH 207 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccccc
Confidence 99774310 00000 00001112233345678888832267788888888888888865542 11111111
Q ss_pred ecCCCeEEEEEcCCC-----c-eEEEEeCCCCEEEEEC
Q 019405 256 FRETPIKAVAEEPDS-----F-NIYIGNGSGDLASVDI 287 (341)
Q Consensus 256 ~~~~~v~~~~~~~~~-----~-~l~~g~~dg~i~iwd~ 287 (341)
.+..-|.+|+|-++. . .+++++-.|.+.+|++
T Consensus 208 ~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 208 QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 245568889886533 2 7778888999999887
No 409
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=95.08 E-value=1.9 Score=36.82 Aligned_cols=148 Identities=10% Similarity=0.125 Sum_probs=86.2
Q ss_pred CCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCE--EEEEe-CC---CeEEEEEcC
Q 019405 172 ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRK--FVAGT-ND---HQVRLYDTS 245 (341)
Q Consensus 172 ~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--l~~~~-~d---~~i~iwd~~ 245 (341)
|...+++...+++-+.+||+. |+.+..+.....+.. .-...+.+ +++. |+.++ .+ .+|++|.+.
T Consensus 66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~Gr~NNV-----Dvrygf~l----~g~~vDlavas~R~~g~n~l~~f~id 135 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLPVGRPNNV-----DVRYGFPL----NGKTVDLAVASDRSDGRNSLRLFRID 135 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETT-S-EEEEE-SS-EEEE-----EEEEEEEE----TTEEEEEEEEEE-CCCT-EEEEEEEE
T ss_pred cccceEEEEeCCCCEEEEcCC-CcEEEeecCCCccee-----eeecceec----CCceEEEEEEecCcCCCCeEEEEEec
Confidence 456677777888899999995 666666653322111 11222222 3332 33433 32 479999886
Q ss_pred CCCceeEEEEe-------cCCCeEEEEE--cC-CC-ceEEEEeCCCCEEEEECC---CC----eEEeEEeccccCceeEE
Q 019405 246 AQRRPVMSFDF-------RETPIKAVAE--EP-DS-FNIYIGNGSGDLASVDIR---TG----KLLGCFIGKCSGSIRSI 307 (341)
Q Consensus 246 ~~~~~~~~~~~-------~~~~v~~~~~--~~-~~-~~l~~g~~dg~i~iwd~~---~~----~~~~~~~~~~~~~i~~~ 307 (341)
.....+..+.. ....+..+++ +| +| .+.++...+|.+..|-+. ++ +++++|... ..+..+
T Consensus 136 ~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~--sQ~EGC 213 (381)
T PF02333_consen 136 PDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVG--SQPEGC 213 (381)
T ss_dssp TTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-S--S-EEEE
T ss_pred CCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCC--CcceEE
Confidence 43333443322 1123566666 34 34 356677788988877664 33 567888763 578899
Q ss_pred EecCCCCEEEEEeCCCcEEEEEcC
Q 019405 308 ARHPTLPIIASCGLDSYLRFWDIK 331 (341)
Q Consensus 308 ~~~~~~~~l~s~~~dg~v~iwd~~ 331 (341)
+......+|..+-+|--|.-|+.+
T Consensus 214 VVDDe~g~LYvgEE~~GIW~y~Ae 237 (381)
T PF02333_consen 214 VVDDETGRLYVGEEDVGIWRYDAE 237 (381)
T ss_dssp EEETTTTEEEEEETTTEEEEEESS
T ss_pred EEecccCCEEEecCccEEEEEecC
Confidence 998888899999888777777765
No 410
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.01 E-value=0.96 Score=40.30 Aligned_cols=124 Identities=11% Similarity=0.051 Sum_probs=70.9
Q ss_pred CCceeEEEeccCCCCCceEEEEccCCeEEEeeCCC-----CcchheeeccCCCCCCCCCCceeeEeeeeccccccccccc
Q 019405 50 SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN-----GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSR 124 (341)
Q Consensus 50 ~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (341)
..|.-++|++-...+-+-|++......|.||.+.- ++.+..-...-...+. -=.-+..|.+...
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~p---vLpQGCVWHPk~~-------- 125 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFP---VLPQGCVWHPKKA-------- 125 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcc---cCCCcccccCCCc--------
Confidence 56788888888776666677778889999998852 2222211111100000 0001233444333
Q ss_pred eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeC-CCeEEEEECC
Q 019405 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK-GVEVNVWDLD 192 (341)
Q Consensus 125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~v~i~d~~ 192 (341)
.|..-.....-.+.++... +.--.-++...+.|.|.+|.+||+.|+++-. .=.-++||-.
T Consensus 126 iL~VLT~~dvSV~~sV~~d--------~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 126 ILTVLTARDVSVLPSVHCD--------SSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred eEEEEecCceeEeeeeeeC--------CceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 4444444444445555432 2333446777899999999999998776533 3345677754
No 411
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.96 E-value=1.6 Score=35.40 Aligned_cols=177 Identities=7% Similarity=0.018 Sum_probs=99.3
Q ss_pred CCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEE
Q 019405 49 HSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLT 128 (341)
Q Consensus 49 ~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 128 (341)
...+..++|+++.. .|.+......-.|+=..+|+.+.++..-. -...-.+.+...+. ..++
T Consensus 85 ~~nvS~LTynp~~r----tLFav~n~p~~iVElt~~GdlirtiPL~g-------~~DpE~Ieyig~n~--------fvi~ 145 (316)
T COG3204 85 TANVSSLTYNPDTR----TLFAVTNKPAAIVELTKEGDLIRTIPLTG-------FSDPETIEYIGGNQ--------FVIV 145 (316)
T ss_pred cccccceeeCCCcc----eEEEecCCCceEEEEecCCceEEEecccc-------cCChhHeEEecCCE--------EEEE
Confidence 34477888888777 56666666666676666788888876521 01111234433333 4555
Q ss_pred EcccceeEEEEeeecccccccCCceEEEEEeec-CCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCC-
Q 019405 129 CTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA-SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKN- 206 (341)
Q Consensus 129 ~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~- 206 (341)
--.+..+.++.++.........+..+.+=...+ ......++|+|..+.|..+=..+-+.||.+...............
T Consensus 146 dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~ 225 (316)
T COG3204 146 DERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPT 225 (316)
T ss_pred ehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcc
Confidence 555667777766543221111111222211112 345678999999988888877777888876533211111111100
Q ss_pred -ccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCC
Q 019405 207 -SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA 246 (341)
Q Consensus 207 -~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 246 (341)
..++ .-.-+.++.|. .+.+.+++-+.+++.+.-.|...
T Consensus 226 ~~~~~-f~~DvSgl~~~-~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 226 ADRDL-FVLDVSGLEFN-AITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred cccce-Eeeccccceec-CCCCcEEEEecCCceEEEEecCC
Confidence 0000 01336777885 35667788888888888888775
No 412
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=94.92 E-value=0.5 Score=40.89 Aligned_cols=95 Identities=18% Similarity=0.189 Sum_probs=58.8
Q ss_pred EEEecCCCCEEEEeeCCCeEEE---EECC-CC----ceeeecCCCCCCccCccCCeeeeEEEEEec---------CCCCE
Q 019405 167 FSKVDISEKFSLFGGKGVEVNV---WDLD-KC----EKIWTAKPPPKNSLGIFTPTWFTSAAFLSI---------DDHRK 229 (341)
Q Consensus 167 ~~~~~~~~~~l~~~~~d~~v~i---~d~~-~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------~~~~~ 229 (341)
.++.+|+++.|+.+..+..+.+ |+.. .+ .........-... ....|+++.+.|- ++...
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~----~~e~ITsi~clpl~s~~~s~~~~dw~~ 81 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDE----PGECITSILCLPLSSQKRSTGGPDWTC 81 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCC----CCCEEEEEEEEEeecccccCCCCCcEE
Confidence 4677899999999887766555 5331 11 1222211111110 1145888777653 56678
Q ss_pred EEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEc
Q 019405 230 FVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEE 267 (341)
Q Consensus 230 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 267 (341)
+++|..+|.|++|.... .. +..-..|..+|..+...
T Consensus 82 I~VG~ssG~vrfyte~G-~L-L~~Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 82 IAVGTSSGYVRFYTENG-VL-LLSQLLHEEPVLKIKCR 117 (415)
T ss_pred EEEEecccEEEEEeccc-hH-HHHHhcCccceEEEEec
Confidence 99999999999998753 43 44444577777777763
No 413
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.88 E-value=0.14 Score=28.05 Aligned_cols=31 Identities=16% Similarity=0.247 Sum_probs=25.2
Q ss_pred CCeEEEEEcCCC---ceEEEEeCCCCEEEEECCC
Q 019405 259 TPIKAVAEEPDS---FNIYIGNGSGDLASVDIRT 289 (341)
Q Consensus 259 ~~v~~~~~~~~~---~~l~~g~~dg~i~iwd~~~ 289 (341)
+.+.++.|+|+. .+|+.+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 368899999854 4777777779999999995
No 414
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=94.77 E-value=4 Score=38.94 Aligned_cols=294 Identities=11% Similarity=0.029 Sum_probs=132.9
Q ss_pred CCCCCceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCC--CCCceEEEEccCCeEEEeeC-CCCc
Q 019405 10 PGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDS--QNDPLLAVARKNGLTDILNP-LNGD 86 (341)
Q Consensus 10 ~~~~~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~~l~~~~~dg~i~iw~~-~~~~ 86 (341)
-.+....++.+..++.+-...+.+. +..+. .-...+..+.|+.+++-+. ...+++++|..+..+.+--. .+..
T Consensus 495 ~~~n~sqVvvA~~~~~l~y~~i~~~--~l~e~--~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~ 570 (1096)
T KOG1897|consen 495 VSANASQVVVAGGGLALFYLEIEDG--GLREV--SHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLI 570 (1096)
T ss_pred EeecceEEEEecCccEEEEEEeecc--ceeee--eeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcc
Confidence 3344444555555555555555554 32222 1122456777888886532 23457888988777555432 2322
Q ss_pred chheeec-cCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCce
Q 019405 87 LRVAISN-AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTI 165 (341)
Q Consensus 87 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i 165 (341)
.+..... ... -...+.-..+-.... +|+.+..||.+..+.++.....- ++. +.-.. ...++
T Consensus 571 ~~~~~~l~~~~-----iPRSIl~~~~e~d~~--------yLlvalgdG~l~~fv~d~~tg~l-sd~---Kk~~l-Gt~P~ 632 (1096)
T KOG1897|consen 571 LITHEQLSGEI-----IPRSILLTTFEGDIH--------YLLVALGDGALLYFVLDINTGQL-SDR---KKVTL-GTQPI 632 (1096)
T ss_pred eeeeeccCCCc-----cchheeeEEeeccce--------EEEEEcCCceEEEEEEEcccceE-ccc---ccccc-CCCCc
Confidence 2221111 000 112233222222122 89999999999877765432110 000 00000 01233
Q ss_pred EEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEE-EEEecCCCCEEEEEeCCCeEEEEEc
Q 019405 166 AFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSA-AFLSIDDHRKFVAGTNDHQVRLYDT 244 (341)
Q Consensus 166 ~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~l~~~~~d~~i~iwd~ 244 (341)
.--.|+..+..-+.+..|.-..+|.-+ ++....--..+ .+..+ .|..+.-...++++ ..+.+++.-+
T Consensus 633 ~Lr~f~sk~~t~vfa~sdrP~viY~~n-~kLv~spls~k----------ev~~~c~f~s~a~~d~l~~~-~~~~l~i~ti 700 (1096)
T KOG1897|consen 633 SLRTFSSKSRTAVFALSDRPTVIYSSN-GKLVYSPLSLK----------EVNHMCPFNSDAYPDSLASA-NGGALTIGTI 700 (1096)
T ss_pred EEEEEeeCCceEEEEeCCCCEEEEecC-CcEEEeccchH----------HhhhhcccccccCCceEEEe-cCCceEEEEe
Confidence 333333333222222333344444332 22222111100 01111 12101112334444 3456777766
Q ss_pred CCCC-ceeEEEEecCCCeEEEEEcCCCceEEEEeCC--------------CCEEEEECCCCeEEeEEeccccC---ceeE
Q 019405 245 SAQR-RPVMSFDFRETPIKAVAEEPDSFNIYIGNGS--------------GDLASVDIRTGKLLGCFIGKCSG---SIRS 306 (341)
Q Consensus 245 ~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d--------------g~i~iwd~~~~~~~~~~~~~~~~---~i~~ 306 (341)
..-+ ..+++...+ .....+++.+....+.+.+.. ..++++|-.+.+.+...+-.... .|.+
T Consensus 701 d~iqkl~irtvpl~-~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s 779 (1096)
T KOG1897|consen 701 DEIQKLHIRTVPLG-ESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIIS 779 (1096)
T ss_pred cchhhcceeeecCC-CChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeee
Confidence 5422 223444333 345667776644444443321 13777787777665443322112 3555
Q ss_pred EEecCC-CCEEEEEe----------CCCcEEEEEcCCCceeee
Q 019405 307 IARHPT-LPIIASCG----------LDSYLRFWDIKTRQLLSA 338 (341)
Q Consensus 307 ~~~~~~-~~~l~s~~----------~dg~v~iwd~~~~~~~~~ 338 (341)
+.|..| +.+++.|. ..|.|.+|.+..++.++.
T Consensus 780 ~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~ 822 (1096)
T KOG1897|consen 780 CKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLEL 822 (1096)
T ss_pred eeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceee
Confidence 558877 55666664 457888888877444443
No 415
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.70 E-value=1.8 Score=34.77 Aligned_cols=130 Identities=15% Similarity=0.127 Sum_probs=81.9
Q ss_pred CEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEE
Q 019405 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF 254 (341)
Q Consensus 175 ~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 254 (341)
+...-.-.++...+||..+.+.+.++.-.. ++ ..++. ++..|+.+.....++++|..+.+. ...+
T Consensus 101 ~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~--------EG--WGLt~----dg~~Li~SDGS~~L~~~dP~~f~~-~~~i 165 (264)
T PF05096_consen 101 KLYQLTWKEGTGFVYDPNTLKKIGTFPYPG--------EG--WGLTS----DGKRLIMSDGSSRLYFLDPETFKE-VRTI 165 (264)
T ss_dssp EEEEEESSSSEEEEEETTTTEEEEEEE-SS--------S----EEEE----CSSCEEEE-SSSEEEEE-TTT-SE-EEEE
T ss_pred EEEEEEecCCeEEEEccccceEEEEEecCC--------cc--eEEEc----CCCEEEEECCccceEEECCcccce-EEEE
Confidence 333344567899999999988888776542 13 34554 677777777778999999887653 4433
Q ss_pred Ee--cCC---CeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEecc--------------ccCceeEEEecCCCCE
Q 019405 255 DF--RET---PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK--------------CSGSIRSIARHPTLPI 315 (341)
Q Consensus 255 ~~--~~~---~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~--------------~~~~i~~~~~~~~~~~ 315 (341)
.- ... .++-+.|- +|...|=.-....|...|..+|+.+..+... ..+-.+.+|+.|....
T Consensus 166 ~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~ 244 (264)
T PF05096_consen 166 QVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDR 244 (264)
T ss_dssp E-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTE
T ss_pred EEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCE
Confidence 32 222 34556664 6767776777888999999999987766311 0246889999997765
Q ss_pred EEEEe
Q 019405 316 IASCG 320 (341)
Q Consensus 316 l~s~~ 320 (341)
|...+
T Consensus 245 l~vTG 249 (264)
T PF05096_consen 245 LFVTG 249 (264)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 44443
No 416
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.63 E-value=2 Score=35.67 Aligned_cols=104 Identities=14% Similarity=0.085 Sum_probs=56.3
Q ss_pred eeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEE-EecCCCeEEEEEcCCCceEEEEeCCCCEEEEEC-CCCe
Q 019405 214 TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF-DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDI-RTGK 291 (341)
Q Consensus 214 ~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~-~~~~ 291 (341)
..+..+.. .+++.+++++..-....-||--... -+.. +.-...|.++.|.|++.+.+++ ..|.|+.=+. ...+
T Consensus 145 gs~~~~~r--~~dG~~vavs~~G~~~~s~~~G~~~--w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 145 GSINDITR--SSDGRYVAVSSRGNFYSSWDPGQTT--WQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGE 219 (302)
T ss_dssp --EEEEEE---TTS-EEEEETTSSEEEEE-TT-SS---EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred ceeEeEEE--CCCCcEEEEECcccEEEEecCCCcc--ceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcc
Confidence 44677766 7899998888766666677744311 1111 2245689999999998776654 7888888772 2222
Q ss_pred EEeE--Eec-cccCceeEEEecCCCCEEEEEeCC
Q 019405 292 LLGC--FIG-KCSGSIRSIARHPTLPIIASCGLD 322 (341)
Q Consensus 292 ~~~~--~~~-~~~~~i~~~~~~~~~~~l~s~~~d 322 (341)
.-.. ... ...-.+..++|.+++...++|+..
T Consensus 220 ~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 220 TWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG 253 (302)
T ss_dssp EE---B-TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred ccccccCCcccCceeeEEEEecCCCCEEEEeCCc
Confidence 2111 111 112348899999998887766544
No 417
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=94.62 E-value=2.8 Score=36.53 Aligned_cols=292 Identities=9% Similarity=-0.043 Sum_probs=134.6
Q ss_pred CceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEecc-CCCCCceEEEEccCCeEEEeeCCC--Cc----
Q 019405 14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASID-DSQNDPLLAVARKNGLTDILNPLN--GD---- 86 (341)
Q Consensus 14 ~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~-~~~~~~~l~~~~~dg~i~iw~~~~--~~---- 86 (341)
.-.++.|+..|.+++++..........++... .-..+|.-+....- .......||+ -.-.++.||.+.. |.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~-~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLET-QLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEE-ecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence 35789999999999999865421111222121 23456666654432 2222234554 5578899998732 11
Q ss_pred ---chheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCC
Q 019405 87 ---LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASG 163 (341)
Q Consensus 87 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~ 163 (341)
.+..+..|.- ......++.-+-.+. .....++.=+.||.+.+++-+ ..........--
T Consensus 115 ~~~~L~~~yeh~l------~~~a~nm~~G~Fgg~---~~~~~IcVQS~DG~L~~feqe----------~~~f~~~lp~~l 175 (418)
T PF14727_consen 115 NQYQLELIYEHSL------QRTAYNMCCGPFGGV---KGRDFICVQSMDGSLSFFEQE----------SFAFSRFLPDFL 175 (418)
T ss_pred cEEEEEEEEEEec------ccceeEEEEEECCCC---CCceEEEEEecCceEEEEeCC----------cEEEEEEcCCCC
Confidence 1111111110 011111221111110 012267777888888888632 222111111111
Q ss_pred ceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeee-----------cCCCCC--CccCccCCeeeeEEEEEe-cCCCCE
Q 019405 164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT-----------AKPPPK--NSLGIFTPTWFTSAAFLS-IDDHRK 229 (341)
Q Consensus 164 ~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~-----------~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~~~ 229 (341)
---.+.+.+....+++++.+..|..|....-..... ....+. ......--..+..+.... +.....
T Consensus 176 lPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~ 255 (418)
T PF14727_consen 176 LPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESD 255 (418)
T ss_pred CCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCce
Confidence 112456677778888888888888887632110000 000000 000000012233333321 112223
Q ss_pred EEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEc------CCC-ceEEEEeCCCCEEEEECCCCeEEeEEeccccC
Q 019405 230 FVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEE------PDS-FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSG 302 (341)
Q Consensus 230 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~------~~~-~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~ 302 (341)
+++-+ .+++.+.+... . .....+..-.+.....|. |+. ..+++++.++.+.||.= .+++...+.. ..
T Consensus 256 IvvLg-er~Lf~l~~~G-~-l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d--~~L~WsA~l~-~~ 329 (418)
T PF14727_consen 256 IVVLG-ERSLFCLKDNG-S-LRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYED--TTLVWSAQLP-HV 329 (418)
T ss_pred EEEEe-cceEEEEcCCC-e-EEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeC--CeEEEecCCC-CC
Confidence 33322 44566665542 2 122222211222222221 221 25888999999999853 4454444433 23
Q ss_pred ce--eEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405 303 SI--RSIARHPTLPIIASCGLDSYLRFWDIKT 332 (341)
Q Consensus 303 ~i--~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 332 (341)
+| .-..|..-...|++-+.+|.+.+-=+-|
T Consensus 330 PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGT 361 (418)
T PF14727_consen 330 PVALSVANFNGLKGLIVSLSDEGQLSVSYLGT 361 (418)
T ss_pred CEEEEecccCCCCceEEEEcCCCcEEEEEeCC
Confidence 33 2222333445888889999988765544
No 418
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.54 E-value=1.1 Score=39.31 Aligned_cols=143 Identities=14% Similarity=0.100 Sum_probs=85.3
Q ss_pred CCCEEE-EeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCC-------CEEEEEeCCCeEEEEEc
Q 019405 173 SEKFSL-FGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH-------RKFVAGTNDHQVRLYDT 244 (341)
Q Consensus 173 ~~~~l~-~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------~~l~~~~~d~~i~iwd~ 244 (341)
+.++|+ .|+....++-.|++.|+.+.....+.. + -+.| .|.. ..-++|-.+..|.-.|.
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~dd----------v-vVqy--~p~~kf~qmt~eqtlvGlS~~svFrIDP 544 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDD----------V-VVQY--NPYFKFQQMTDEQTLVGLSDYSVFRIDP 544 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCc----------c-eeec--CCchhHHhcCccceEEeecccceEEecc
Confidence 444444 355556778888888888776665432 2 3344 3322 12334555666666676
Q ss_pred CCCCceeEEEEecCCCeEEEEEc----CCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEe
Q 019405 245 SAQRRPVMSFDFRETPIKAVAEE----PDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG 320 (341)
Q Consensus 245 ~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 320 (341)
+-....+..... ....+.-.|+ ....++|+++..|.|++||--.-+....+++- ...|..+..+.+|.++++.|
T Consensus 545 R~~gNKi~v~es-KdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~l-G~aIk~idvta~Gk~ilaTC 622 (776)
T COG5167 545 RARGNKIKVVES-KDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGL-GDAIKHIDVTANGKHILATC 622 (776)
T ss_pred cccCCceeeeee-hhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCccc-ccceeeeEeecCCcEEEEee
Confidence 543222332221 1222222232 23459999999999999996544444445555 77899999999999887776
Q ss_pred CCCcEEEEEcC
Q 019405 321 LDSYLRFWDIK 331 (341)
Q Consensus 321 ~dg~v~iwd~~ 331 (341)
.. .+.+-|++
T Consensus 623 k~-yllL~d~~ 632 (776)
T COG5167 623 KN-YLLLTDVP 632 (776)
T ss_pred cc-eEEEEecc
Confidence 65 56666654
No 419
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.35 E-value=0.7 Score=36.36 Aligned_cols=69 Identities=12% Similarity=0.082 Sum_probs=49.3
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCCCceeEE------EE-------ecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCC
Q 019405 224 IDDHRKFVAGTNDHQVRLYDTSAQRRPVMS------FD-------FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG 290 (341)
Q Consensus 224 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~------~~-------~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~ 290 (341)
..++.+|++-+.+|.+++||+.+.+..+.. +. .....|..+.++.+|.-|++- .+|..+.||..-+
T Consensus 19 ~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng~~y~y~~~L~ 97 (219)
T PF07569_consen 19 ECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNGDSYSYSPDLG 97 (219)
T ss_pred EeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCCCEEEeccccc
Confidence 346788999999999999999986542221 11 244678889999888766654 4578899987644
Q ss_pred eEE
Q 019405 291 KLL 293 (341)
Q Consensus 291 ~~~ 293 (341)
..+
T Consensus 98 ~W~ 100 (219)
T PF07569_consen 98 CWI 100 (219)
T ss_pred eeE
Confidence 433
No 420
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=94.18 E-value=3.2 Score=35.44 Aligned_cols=149 Identities=15% Similarity=0.155 Sum_probs=77.6
Q ss_pred EecCCCCEEEEeeC-C--CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcC
Q 019405 169 KVDISEKFSLFGGK-G--VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS 245 (341)
Q Consensus 169 ~~~~~~~~l~~~~~-d--~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~ 245 (341)
+|.++|+.|+.++. + ..+.+.|+.+++..+--....... ..... +++.+.++-...+..|+-.|++
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~---------~g~~~--s~~~~~~~Yv~~~~~l~~vdL~ 110 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNT---------FGGFL--SPDDRALYYVKNGRSLRRVDLD 110 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-T---------TT-EE---TTSSEEEEEETTTEEEEEETT
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCc---------cceEE--ecCCCeEEEEECCCeEEEEECC
Confidence 56678876665554 4 457788888877655443322111 12233 5667776655556788999999
Q ss_pred CCCceeEEEEecCCCeEEEEEc--CCCceEEEEe---CC-------------------CCEEEEECCCCeEEeEEecccc
Q 019405 246 AQRRPVMSFDFRETPIKAVAEE--PDSFNIYIGN---GS-------------------GDLASVDIRTGKLLGCFIGKCS 301 (341)
Q Consensus 246 ~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~g~---~d-------------------g~i~iwd~~~~~~~~~~~~~~~ 301 (341)
+.+. ...+......+-...|. .++..++-.- .| ..|.-.|+.+|+....+.. .
T Consensus 111 T~e~-~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~--~ 187 (386)
T PF14583_consen 111 TLEE-RVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFED--T 187 (386)
T ss_dssp T--E-EEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEE--S
T ss_pred cCcE-EEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEec--C
Confidence 8664 44455555555555553 4555543221 11 2355668888887666654 5
Q ss_pred CceeEEEecCCCCEEEEEeCCC-----cEEEEEcC
Q 019405 302 GSIRSIARHPTLPIIASCGLDS-----YLRFWDIK 331 (341)
Q Consensus 302 ~~i~~~~~~~~~~~l~s~~~dg-----~v~iwd~~ 331 (341)
..+..+.|+|..+.++.=|..| .-|||-++
T Consensus 188 ~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~ 222 (386)
T PF14583_consen 188 DWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTIN 222 (386)
T ss_dssp S-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEE
T ss_pred ccccCcccCCCCCCEEEEeccCCcceeceEEEEEE
Confidence 7889999999877666655443 13666554
No 421
>PHA03098 kelch-like protein; Provisional
Probab=94.14 E-value=1.8 Score=39.41 Aligned_cols=146 Identities=14% Similarity=0.062 Sum_probs=70.7
Q ss_pred CCCEEEEeeCC-----CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCC------CeEEE
Q 019405 173 SEKFSLFGGKG-----VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND------HQVRL 241 (341)
Q Consensus 173 ~~~~l~~~~~d-----~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d------~~i~i 241 (341)
++...+.||.+ ..+..||..+.+-.. ...... +..-.+++. -++...+.|+.+ ..+..
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~-~~~lp~-------~r~~~~~~~---~~~~iYv~GG~~~~~~~~~~v~~ 410 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWRE-EPPLIF-------PRYNPCVVN---VNNLIYVIGGISKNDELLKTVEC 410 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceee-CCCcCc-------CCccceEEE---ECCEEEEECCcCCCCcccceEEE
Confidence 56677777765 347778876543221 111100 010112222 256677777632 45788
Q ss_pred EEcCCCCc-eeEEEEecCCCeEEEEEcCCCceEEEEeCC--------CCEEEEECCCCeEEeE--EeccccCceeEEEec
Q 019405 242 YDTSAQRR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGS--------GDLASVDIRTGKLLGC--FIGKCSGSIRSIARH 310 (341)
Q Consensus 242 wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d--------g~i~iwd~~~~~~~~~--~~~~~~~~i~~~~~~ 310 (341)
||..+.+= .+..+....... +++ ..++..++.|+.+ ..+.+||..+++.... +... ......+.+
T Consensus 411 yd~~t~~W~~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~-r~~~~~~~~- 486 (534)
T PHA03098 411 FSLNTNKWSKGSPLPISHYGG-CAI-YHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP-RINASLCIF- 486 (534)
T ss_pred EeCCCCeeeecCCCCccccCc-eEE-EECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcc-cccceEEEE-
Confidence 88776321 011111011111 122 2355666666643 2388999887654322 1111 111111222
Q ss_pred CCCCEEEEEeCC-----CcEEEEEcCCCc
Q 019405 311 PTLPIIASCGLD-----SYLRFWDIKTRQ 334 (341)
Q Consensus 311 ~~~~~l~s~~~d-----g~v~iwd~~~~~ 334 (341)
++..++.|+.+ ..|.+||..+.+
T Consensus 487 -~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 487 -NNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred -CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 66777777654 478889988754
No 422
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=94.09 E-value=0.37 Score=44.01 Aligned_cols=37 Identities=24% Similarity=0.375 Sum_probs=28.9
Q ss_pred ceeEEEecC----CCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 303 SIRSIARHP----TLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 303 ~i~~~~~~~----~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
....++.++ +..+|++.+.|+.+|+||+.+++++.++
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 455566666 6679999999999999999999997654
No 423
>PHA03098 kelch-like protein; Provisional
Probab=94.02 E-value=2.4 Score=38.70 Aligned_cols=148 Identities=14% Similarity=0.049 Sum_probs=70.2
Q ss_pred CCCEEEEeeCCC------eEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCC-----CeEEE
Q 019405 173 SEKFSLFGGKGV------EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-----HQVRL 241 (341)
Q Consensus 173 ~~~~l~~~~~d~------~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-----~~i~i 241 (341)
++..++.||.++ .+..||..+.+-. .+...... ......+.. ++.+++.|+.+ ..+..
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~------R~~~~~~~~----~~~lyv~GG~~~~~~~~~v~~ 362 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWN-KVPELIYP------RKNPGVTVF----NNRIYVIGGIYNSISLNTVES 362 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeee-ECCCCCcc------cccceEEEE----CCEEEEEeCCCCCEecceEEE
Confidence 456666676542 4778888765432 22211100 011222233 56777777765 34677
Q ss_pred EEcCCCCc-eeEEEEecCCCeEEEEEcCCCceEEEEeCC------CCEEEEECCCCeEEeEEeccccCceeEEEecCCCC
Q 019405 242 YDTSAQRR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGS------GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP 314 (341)
Q Consensus 242 wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d------g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 314 (341)
||..+.+= ....+...... .+++ .-+++..+.|+.+ ..+..||+.+++....-.......-.++ ...++.
T Consensus 363 yd~~~~~W~~~~~lp~~r~~-~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~-~~~~~~ 439 (534)
T PHA03098 363 WKPGESKWREEPPLIFPRYN-PCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCA-IYHDGK 439 (534)
T ss_pred EcCCCCceeeCCCcCcCCcc-ceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceE-EEECCE
Confidence 88765321 01111111111 1122 2256666677632 4588999887654322111100011122 223566
Q ss_pred EEEEEeCCC--------cEEEEEcCCCc
Q 019405 315 IIASCGLDS--------YLRFWDIKTRQ 334 (341)
Q Consensus 315 ~l~s~~~dg--------~v~iwd~~~~~ 334 (341)
.++.|+.+. .+.+||..+++
T Consensus 440 iyv~GG~~~~~~~~~~~~v~~yd~~~~~ 467 (534)
T PHA03098 440 IYVIGGISYIDNIKVYNIVESYNPVTNK 467 (534)
T ss_pred EEEECCccCCCCCcccceEEEecCCCCc
Confidence 666666432 37888887654
No 424
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.84 E-value=0.65 Score=36.56 Aligned_cols=67 Identities=15% Similarity=-0.012 Sum_probs=49.8
Q ss_pred EcCCCceEEEEeCCCCEEEEECCCCeEEeEE-------ec------cccCceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405 266 EEPDSFNIYIGNGSGDLASVDIRTGKLLGCF-------IG------KCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (341)
Q Consensus 266 ~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-------~~------~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 332 (341)
+..++.+|++-+.+|.+++||+.+++.+..- .. .....|..+.++.+|.-+++-+ +|..+.|+..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 3456778999999999999999988764332 11 1246788899998888777664 57889998765
Q ss_pred C
Q 019405 333 R 333 (341)
Q Consensus 333 ~ 333 (341)
+
T Consensus 97 ~ 97 (219)
T PF07569_consen 97 G 97 (219)
T ss_pred c
Confidence 4
No 425
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.75 E-value=1.1 Score=39.35 Aligned_cols=75 Identities=16% Similarity=0.156 Sum_probs=51.0
Q ss_pred CeEEEEEcCCCceEEEEeCCCCEEEEEC---------CCCeEEeEEe----------ccccCceeEEEecCCC---CEEE
Q 019405 260 PIKAVAEEPDSFNIYIGNGSGDLASVDI---------RTGKLLGCFI----------GKCSGSIRSIARHPTL---PIIA 317 (341)
Q Consensus 260 ~v~~~~~~~~~~~l~~g~~dg~i~iwd~---------~~~~~~~~~~----------~~~~~~i~~~~~~~~~---~~l~ 317 (341)
.|..+..++.|..++..+.+|.+.++=. ++|+..-..+ ....-.+..++|+|+. ..|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 4566778999999999998988766532 2343221111 1012356778999976 5788
Q ss_pred EEeCCCcEEEEEcCCCc
Q 019405 318 SCGLDSYLRFWDIKTRQ 334 (341)
Q Consensus 318 s~~~dg~v~iwd~~~~~ 334 (341)
.-+.|..||+||+..-.
T Consensus 185 iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPT 201 (741)
T ss_pred EEecCcEEEEEecCCcc
Confidence 88899999999987643
No 426
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=93.56 E-value=4.1 Score=34.53 Aligned_cols=76 Identities=17% Similarity=0.229 Sum_probs=45.5
Q ss_pred eeEEEEecCCCeEEEEEcC-------CCceEEEEeCCCCEEEEECCCCeEEe---EEeccccCceeEEEecCCCCEEEEE
Q 019405 250 PVMSFDFRETPIKAVAEEP-------DSFNIYIGNGSGDLASVDIRTGKLLG---CFIGKCSGSIRSIARHPTLPIIASC 319 (341)
Q Consensus 250 ~~~~~~~~~~~v~~~~~~~-------~~~~l~~g~~dg~i~iwd~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~s~ 319 (341)
|+..+..| ..+..+.|.. .|.++++.-..+.|....+..+..+. .+.......+..+++.|||.++++.
T Consensus 245 P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~ 323 (331)
T PF07995_consen 245 PVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSD 323 (331)
T ss_dssp -SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE
T ss_pred cceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEE
Confidence 34444434 4566777753 45566666666788888877553322 2222214479999999999988888
Q ss_pred eCCCcEE
Q 019405 320 GLDSYLR 326 (341)
Q Consensus 320 ~~dg~v~ 326 (341)
+.+|.|.
T Consensus 324 d~~G~iy 330 (331)
T PF07995_consen 324 DSDGKIY 330 (331)
T ss_dssp -TTTTEE
T ss_pred CCCCeEe
Confidence 8888764
No 427
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=93.04 E-value=2.3 Score=30.15 Aligned_cols=109 Identities=14% Similarity=0.137 Sum_probs=69.3
Q ss_pred eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecC-----CCCEEEEeeCCCeEEEEECCCCceeee
Q 019405 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-----SEKFSLFGGKGVEVNVWDLDKCEKIWT 199 (341)
Q Consensus 125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~d~~v~i~d~~~~~~~~~ 199 (341)
.|+.++..|.+.|.+...........+..++..++ ...|.+++-.+ +...|+.|+.. .|..||+.+...++.
T Consensus 12 cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi--n~~italaaG~l~~~~~~D~LliGt~t-~llaYDV~~N~d~Fy 88 (136)
T PF14781_consen 12 CLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI--NQEITALAAGRLKPDDGRDCLLIGTQT-SLLAYDVENNSDLFY 88 (136)
T ss_pred eEEEEecCCEEEEECCCccccccccccCceeEEEC--CCceEEEEEEecCCCCCcCEEEEeccc-eEEEEEcccCchhhh
Confidence 78888889999999876655444446667788776 45777775533 34567777665 799999987665543
Q ss_pred cCCCCCCccCccCCeeeeEEEEEe-cCCCCEEEEEeCCCeEEEEEcCC
Q 019405 200 AKPPPKNSLGIFTPTWFTSAAFLS-IDDHRKFVAGTNDHQVRLYDTSA 246 (341)
Q Consensus 200 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~d~~i~iwd~~~ 246 (341)
-..+ ..++++.+-. .....-++..+.+..|.-||...
T Consensus 89 ke~~----------DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G 126 (136)
T PF14781_consen 89 KEVP----------DGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEG 126 (136)
T ss_pred hhCc----------cceeEEEEEecCCCCCcEEEECceEEEEEeCCCC
Confidence 3322 3366666521 12123344444577888888664
No 428
>PRK13684 Ycf48-like protein; Provisional
Probab=93.03 E-value=5 Score=34.04 Aligned_cols=151 Identities=11% Similarity=-0.018 Sum_probs=80.7
Q ss_pred CceEEEEecCCCCEEEEeeCCCeEEEEECCCC-ceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEE
Q 019405 163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC-EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL 241 (341)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~i 241 (341)
..+..+.+.+++.+++++ ..|.+.. ..+.+ +......... ...++++.+ .++++.++++ ..|.+++
T Consensus 173 g~~~~i~~~~~g~~v~~g-~~G~i~~-s~~~gg~tW~~~~~~~--------~~~l~~i~~--~~~g~~~~vg-~~G~~~~ 239 (334)
T PRK13684 173 GVVRNLRRSPDGKYVAVS-SRGNFYS-TWEPGQTAWTPHQRNS--------SRRLQSMGF--QPDGNLWMLA-RGGQIRF 239 (334)
T ss_pred ceEEEEEECCCCeEEEEe-CCceEEE-EcCCCCCeEEEeeCCC--------cccceeeeE--cCCCCEEEEe-cCCEEEE
Confidence 457788888887766554 4454442 22222 2222222211 144788888 6778776665 5676653
Q ss_pred EEcCCCCceeEEEEe----cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEec--cccCceeEEEecCCCCE
Q 019405 242 YDTSAQRRPVMSFDF----RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG--KCSGSIRSIARHPTLPI 315 (341)
Q Consensus 242 wd~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~ 315 (341)
=....+.. -..... ....+.++.+.|++..+++ +.+|.+.. ....++.-...+. ......+.+.|..++..
T Consensus 240 ~s~d~G~s-W~~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~ 316 (334)
T PRK13684 240 NDPDDLES-WSKPIIPEITNGYGYLDLAYRTPGEIWAG-GGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKG 316 (334)
T ss_pred ccCCCCCc-cccccCCccccccceeeEEEcCCCCEEEE-cCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCce
Confidence 22333221 111111 1235778899998776555 45665543 3443433222221 11345788888777666
Q ss_pred EEEEeCCCcEEEEEc
Q 019405 316 IASCGLDSYLRFWDI 330 (341)
Q Consensus 316 l~s~~~dg~v~iwd~ 330 (341)
++ .+..|.|.-|+-
T Consensus 317 ~~-~G~~G~il~~~~ 330 (334)
T PRK13684 317 FV-LGQRGVLLRYVG 330 (334)
T ss_pred EE-ECCCceEEEecC
Confidence 55 557788777653
No 429
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=92.90 E-value=4.3 Score=32.88 Aligned_cols=109 Identities=15% Similarity=0.077 Sum_probs=66.7
Q ss_pred eeEEEEEecCCCCEEEEEe---CCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEE-CCCCe
Q 019405 216 FTSAAFLSIDDHRKFVAGT---NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVD-IRTGK 291 (341)
Q Consensus 216 v~~~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd-~~~~~ 291 (341)
+.+.+. ++++..++... ....++++... ......+. ...+..-.|++++...++...+...+++. ..+++
T Consensus 26 ~~s~Av--S~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~--g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 26 VTSPAV--SPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLT--GGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred ccceEE--CCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeecc--CCccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence 667788 88998877655 33345555433 32122222 23678889999988777777677777763 33333
Q ss_pred EE-eEEecccc-CceeEEEecCCCCEEEEEe---CCCcEEEEEc
Q 019405 292 LL-GCFIGKCS-GSIRSIARHPTLPIIASCG---LDSYLRFWDI 330 (341)
Q Consensus 292 ~~-~~~~~~~~-~~i~~~~~~~~~~~l~s~~---~dg~v~iwd~ 330 (341)
.. ........ ..|..+.++|||..++... .++.|.+=-+
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V 143 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGV 143 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEE
Confidence 21 12222112 2899999999999776654 3466766543
No 430
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.83 E-value=0.96 Score=43.49 Aligned_cols=106 Identities=10% Similarity=0.002 Sum_probs=66.5
Q ss_pred cCCCCEEEE--EeCCCeEEEEEcCCCCce----eEEEEe------cCCCeEEEEEcCCC-ceEEEEeCCCCEEEEECCCC
Q 019405 224 IDDHRKFVA--GTNDHQVRLYDTSAQRRP----VMSFDF------RETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTG 290 (341)
Q Consensus 224 ~~~~~~l~~--~~~d~~i~iwd~~~~~~~----~~~~~~------~~~~v~~~~~~~~~-~~l~~g~~dg~i~iwd~~~~ 290 (341)
.+|....++ .+++-.|..||+++.... ..-+.. ...-..++.|+|.- ...++...|+.|++..+...
T Consensus 109 ~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~ 188 (1405)
T KOG3630|consen 109 FHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQL 188 (1405)
T ss_pred ccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhh
Confidence 445544443 344457899998864311 111111 11234567888753 34566778888888876532
Q ss_pred e-EEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcC
Q 019405 291 K-LLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331 (341)
Q Consensus 291 ~-~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~ 331 (341)
. ....++. ....++++|+|.|..++.|-..|++.-|...
T Consensus 189 ~~~v~s~p~--t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~ 228 (1405)
T KOG3630|consen 189 AQNVTSFPV--TNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS 228 (1405)
T ss_pred hhhhcccCc--ccceeeEEeccccceeeEecCCCeEEEeecc
Confidence 2 2233332 5678999999999999999999998877653
No 431
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.73 E-value=6.7 Score=34.68 Aligned_cols=143 Identities=19% Similarity=0.183 Sum_probs=83.6
Q ss_pred eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC-------CEEEEeeCCCeEEEEECCC-Cce
Q 019405 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-------KFSLFGGKGVEVNVWDLDK-CEK 196 (341)
Q Consensus 125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~-------~~l~~~~~d~~v~i~d~~~-~~~ 196 (341)
.+..+...+.+.-.|++.++ .|..|++.. .+ -+.+.|+. ..-++|-.+..|.-.|.+- +..
T Consensus 482 i~~dg~~~~kLykmDIErGk--------vveeW~~~d--dv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNK 550 (776)
T COG5167 482 IYLDGGERDKLYKMDIERGK--------VVEEWDLKD--DV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNK 550 (776)
T ss_pred EEecCCCcccceeeecccce--------eeeEeecCC--cc-eeecCCchhHHhcCccceEEeecccceEEecccccCCc
Confidence 44455556666677776555 678898743 33 56666642 2223455555666666652 322
Q ss_pred eeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEE
Q 019405 197 IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIG 276 (341)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g 276 (341)
+....... +. ......+..- ....+++.++..|-|++||.-. .+....+.+-...|..+..+.+|.++++.
T Consensus 551 i~v~esKd---Y~--tKn~Fss~~t---TesGyIa~as~kGDirLyDRig-~rAKtalP~lG~aIk~idvta~Gk~ilaT 621 (776)
T COG5167 551 IKVVESKD---YK--TKNKFSSGMT---TESGYIAAASRKGDIRLYDRIG-KRAKTALPGLGDAIKHIDVTANGKHILAT 621 (776)
T ss_pred eeeeeehh---cc--cccccccccc---ccCceEEEecCCCceeeehhhc-chhhhcCcccccceeeeEeecCCcEEEEe
Confidence 21111100 00 0011222222 3456999999999999999654 33244455566789999999999888776
Q ss_pred eCCCCEEEEECC
Q 019405 277 NGSGDLASVDIR 288 (341)
Q Consensus 277 ~~dg~i~iwd~~ 288 (341)
+. ..+.+-|++
T Consensus 622 Ck-~yllL~d~~ 632 (776)
T COG5167 622 CK-NYLLLTDVP 632 (776)
T ss_pred ec-ceEEEEecc
Confidence 64 467777764
No 432
>PHA02790 Kelch-like protein; Provisional
Probab=92.29 E-value=7.5 Score=34.94 Aligned_cols=141 Identities=10% Similarity=0.002 Sum_probs=69.7
Q ss_pred CCCEEEEeeCC--CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCC---eEEEEEcCCC
Q 019405 173 SEKFSLFGGKG--VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH---QVRLYDTSAQ 247 (341)
Q Consensus 173 ~~~~l~~~~~d--~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~ 247 (341)
++...+.||.+ ..+..||..+.+-. .+...... ......+.. ++...+.|+.++ .+..||.++.
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~-~~~~l~~~------r~~~~~~~~----~g~IYviGG~~~~~~~ve~ydp~~~ 386 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWV-NMPSLLKP------RCNPAVASI----NNVIYVIGGHSETDTTTEYLLPNHD 386 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEE-ECCCCCCC------CcccEEEEE----CCEEEEecCcCCCCccEEEEeCCCC
Confidence 56666777753 35777887654321 11111100 011222233 677777777553 4667887653
Q ss_pred CceeEEEEe---cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEe--EEeccccCceeEEEecCCCCEEEEEeCC
Q 019405 248 RRPVMSFDF---RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLG--CFIGKCSGSIRSIARHPTLPIIASCGLD 322 (341)
Q Consensus 248 ~~~~~~~~~---~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~s~~~d 322 (341)
+ -..... .......+ .-+++..+.| |.+.+||.++++... .+... .... +++. -++++.+.||.+
T Consensus 387 ~--W~~~~~m~~~r~~~~~~--~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~-r~~~-~~~v-~~~~IYviGG~~ 456 (480)
T PHA02790 387 Q--WQFGPSTYYPHYKSCAL--VFGRRLFLVG---RNAEFYCESSNTWTLIDDPIYP-RDNP-ELII-VDNKLLLIGGFY 456 (480)
T ss_pred E--EEeCCCCCCccccceEE--EECCEEEEEC---CceEEecCCCCcEeEcCCCCCC-cccc-EEEE-ECCEEEEECCcC
Confidence 2 111110 10111112 2355566666 357789988765532 22211 1122 2222 367777777754
Q ss_pred -----CcEEEEEcCCCc
Q 019405 323 -----SYLRFWDIKTRQ 334 (341)
Q Consensus 323 -----g~v~iwd~~~~~ 334 (341)
..+..||..+.+
T Consensus 457 ~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 457 RGSYIDTIEVYNNRTYS 473 (480)
T ss_pred CCcccceEEEEECCCCe
Confidence 357888888764
No 433
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=92.19 E-value=7.3 Score=33.89 Aligned_cols=195 Identities=12% Similarity=0.014 Sum_probs=88.9
Q ss_pred eeEEEcccceeEEEEeeecccccccCCceEEEEEee---cC---CceEEEEecCCCCEEEEee------CCCeEEEEECC
Q 019405 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC---AS---GTIAFSKVDISEKFSLFGG------KGVEVNVWDLD 192 (341)
Q Consensus 125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~---~~---~~i~~~~~~~~~~~l~~~~------~d~~v~i~d~~ 192 (341)
.++-+-.++.|.|.|+...+.. -...++.+.. .. ..-..+-.-|+|+.++++- .-|.+.++|-+
T Consensus 90 Li~PgL~SsrIyviD~~~dPr~----P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 90 LILPGLRSSRIYVIDTKTDPRK----PRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp EEEEBTTT--EEEEE--S-TTS-----EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred EEeeeeccCcEEEEECCCCCCC----CceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 4455557889999998755431 1122332210 00 1112233346787877642 23468888888
Q ss_pred CCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeC--------------------CCeEEEEEcCCCCceeE
Q 019405 193 KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN--------------------DHQVRLYDTSAQRRPVM 252 (341)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~--------------------d~~i~iwd~~~~~~~~~ 252 (341)
+.+.....+..... ...-...-| .|..+.+++... ..++.+||+.+.+ +++
T Consensus 166 tf~v~g~We~~~~~------~~~gYDfw~--qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~-~~Q 236 (461)
T PF05694_consen 166 TFEVKGRWEKDRGP------QPFGYDFWY--QPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRK-LLQ 236 (461)
T ss_dssp T--EEEE--SB-TT------------EEE--ETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTE-EEE
T ss_pred cccccceeccCCCC------CCCCCCeEE--cCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCc-Eee
Confidence 77666555543221 123455566 667777777543 3579999999865 478
Q ss_pred EEEecCC--CeEEEEEc--CCCceEEEEe-CCCCEEEEEC-CCCe----EEeEEecc---------c-------cCceeE
Q 019405 253 SFDFRET--PIKAVAEE--PDSFNIYIGN-GSGDLASVDI-RTGK----LLGCFIGK---------C-------SGSIRS 306 (341)
Q Consensus 253 ~~~~~~~--~v~~~~~~--~~~~~l~~g~-~dg~i~iwd~-~~~~----~~~~~~~~---------~-------~~~i~~ 306 (341)
++..... ....+.|. |+..+=++|+ ..++|..|-- ..++ .+-.+... . ..-|+.
T Consensus 237 ~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitD 316 (461)
T PF05694_consen 237 TIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITD 316 (461)
T ss_dssp EEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------
T ss_pred EEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEe
Confidence 7776433 24456664 5554444433 4455555533 3442 22222211 0 235799
Q ss_pred EEecCCCCEEEEEe-CCCcEEEEEcCC
Q 019405 307 IARHPTLPIIASCG-LDSYLRFWDIKT 332 (341)
Q Consensus 307 ~~~~~~~~~l~s~~-~dg~v~iwd~~~ 332 (341)
+..|.|.++|..++ .+|.||.||+..
T Consensus 317 I~iSlDDrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 317 ILISLDDRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred EEEccCCCEEEEEcccCCcEEEEecCC
Confidence 99999999887766 689999999976
No 434
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=92.15 E-value=1.3 Score=38.16 Aligned_cols=162 Identities=17% Similarity=0.124 Sum_probs=94.3
Q ss_pred CceEEEEecCCCCEEEEeeCCCeEEEEECCCCcee-eecCCC-CCCccCccCCeeee-EEEEEecCCCCEEEEEeCCCeE
Q 019405 163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI-WTAKPP-PKNSLGIFTPTWFT-SAAFLSIDDHRKFVAGTNDHQV 239 (341)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~-~~~~~~-~~~~~~~~~~~~v~-~~~~~~~~~~~~l~~~~~d~~i 239 (341)
..+..+-..||++.++.-+. .++.++++.+.... +++... .++.. ..|+ .+.. -..+.-+++++.||.|
T Consensus 221 ~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~-----~~Vte~l~l--L~Gg~SLLv~~~dG~v 292 (733)
T COG4590 221 SDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSR-----HQVTEQLYL--LSGGFSLLVVHEDGLV 292 (733)
T ss_pred cchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchH-----HHHHHHHHH--HhCceeEEEEcCCCce
Confidence 45667788899999887665 58889988754321 122111 11000 1111 1111 1245667888889988
Q ss_pred EEE-EcCCCCce----eEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCC
Q 019405 240 RLY-DTSAQRRP----VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP 314 (341)
Q Consensus 240 ~iw-d~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 314 (341)
.-| |.+....+ ++.++....++..+.-..+.+-+++-+..|++..+.....+.+..-.. -..+.-+++||.+.
T Consensus 293 sQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~--~~~~~~~~~Sp~~~ 370 (733)
T COG4590 293 SQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERA--YQAPQLVAMSPNQA 370 (733)
T ss_pred eeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhh--hcCcceeeeCcccc
Confidence 766 55543322 222222223444443333445677777888888886654444322222 23567789999999
Q ss_pred EEEEEeCCCcEEEEEcCCCce
Q 019405 315 IIASCGLDSYLRFWDIKTRQL 335 (341)
Q Consensus 315 ~l~s~~~dg~v~iwd~~~~~~ 335 (341)
+|++- ..|.++++.+++..+
T Consensus 371 ~Ll~e-~~gki~~~~l~Nr~P 390 (733)
T COG4590 371 YLLSE-DQGKIRLAQLENRNP 390 (733)
T ss_pred hheee-cCCceEEEEecCCCC
Confidence 98876 456899998887554
No 435
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=92.13 E-value=1.3 Score=40.57 Aligned_cols=72 Identities=15% Similarity=0.135 Sum_probs=44.4
Q ss_pred CCCCEEEEEeCCCeEEEEEcCC---CCceeEEEEe----------------------cCCCeEEEEEcC----CCceEEE
Q 019405 225 DDHRKFVAGTNDHQVRLYDTSA---QRRPVMSFDF----------------------RETPIKAVAEEP----DSFNIYI 275 (341)
Q Consensus 225 ~~~~~l~~~~~d~~i~iwd~~~---~~~~~~~~~~----------------------~~~~v~~~~~~~----~~~~l~~ 275 (341)
++...++.+..||.+....... .......... .......++++. +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3667888888999988887664 1111111110 012345566665 6678999
Q ss_pred EeCCCCEEEEECCCCeEEeEE
Q 019405 276 GNGSGDLASVDIRTGKLLGCF 296 (341)
Q Consensus 276 g~~dg~i~iwd~~~~~~~~~~ 296 (341)
-+.|+.+|+||+.+++++.+.
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999996654
No 436
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=92.09 E-value=7.5 Score=33.81 Aligned_cols=148 Identities=15% Similarity=0.098 Sum_probs=72.4
Q ss_pred eEEEEecCCCCEEEEee--------------------CCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEec
Q 019405 165 IAFSKVDISEKFSLFGG--------------------KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSI 224 (341)
Q Consensus 165 i~~~~~~~~~~~l~~~~--------------------~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 224 (341)
-..+-+.|..+.+++.. ...++.+||+.+.+.++.+.-.... .....+.|.-.
T Consensus 183 gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g-------~~pLEvRflH~ 255 (461)
T PF05694_consen 183 GYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG-------QMPLEVRFLHD 255 (461)
T ss_dssp ---EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE-------EEEEEEEE-SS
T ss_pred CCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC-------CceEEEEecCC
Confidence 34556667777777643 2457999999999998887765321 23556777545
Q ss_pred CCCCEEEEEe-CCCeEEEEEc-CCCC---ceeEEEEec-----------------CCCeEEEEEcCCCceEEEEe-CCCC
Q 019405 225 DDHRKFVAGT-NDHQVRLYDT-SAQR---RPVMSFDFR-----------------ETPIKAVAEEPDSFNIYIGN-GSGD 281 (341)
Q Consensus 225 ~~~~~l~~~~-~d~~i~iwd~-~~~~---~~~~~~~~~-----------------~~~v~~~~~~~~~~~l~~g~-~dg~ 281 (341)
|+..+=.+++ -..+|..|-- ..++ +.+..+... ..-|+.+..|.|.++|+..+ .+|.
T Consensus 256 P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~Gd 335 (461)
T PF05694_consen 256 PDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGD 335 (461)
T ss_dssp TT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTE
T ss_pred CCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCc
Confidence 6665533333 3444544433 3221 112222211 13478899999999988665 6899
Q ss_pred EEEEECCCC---eEEeEEecc---------------ccCceeEEEecCCCCEEEEE
Q 019405 282 LASVDIRTG---KLLGCFIGK---------------CSGSIRSIARHPTLPIIASC 319 (341)
Q Consensus 282 i~iwd~~~~---~~~~~~~~~---------------~~~~i~~~~~~~~~~~l~s~ 319 (341)
|+.||+.+. +++.++.-. -.+...-+..|.||+.|...
T Consensus 336 vrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 336 VRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp EEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred EEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence 999999753 444433211 01123557778888765443
No 437
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.89 E-value=6 Score=34.39 Aligned_cols=102 Identities=10% Similarity=0.069 Sum_probs=66.1
Q ss_pred ccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCc---eeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEE
Q 019405 210 IFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR---PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVD 286 (341)
Q Consensus 210 ~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd 286 (341)
+...+.|.++.| ++|.+.+|+--.+++|.+++....+. ..++-+..+..|....|+.+. -+|.-...| +.+|-
T Consensus 63 m~d~G~I~SIkF--SlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~-e~A~i~~~G-~e~y~ 138 (657)
T KOG2377|consen 63 MDDKGEIKSIKF--SLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSST-EIAFITDQG-IEFYQ 138 (657)
T ss_pred ecCCCceeEEEe--ccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCe-eEEEEecCC-eEEEE
Confidence 334577999999 99999999999999999999854321 122223344568889998663 455444333 55554
Q ss_pred CCC-CeEEeEEeccccCceeEEEecCCCCEE
Q 019405 287 IRT-GKLLGCFIGKCSGSIRSIARHPTLPII 316 (341)
Q Consensus 287 ~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l 316 (341)
... .+.++..+.+ ...|+=-.|.++.+.+
T Consensus 139 v~pekrslRlVks~-~~nvnWy~yc~et~v~ 168 (657)
T KOG2377|consen 139 VLPEKRSLRLVKSH-NLNVNWYMYCPETAVI 168 (657)
T ss_pred Echhhhhhhhhhhc-ccCccEEEEccccceE
Confidence 432 2334444555 6677777788887743
No 438
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.73 E-value=11 Score=35.01 Aligned_cols=55 Identities=13% Similarity=0.160 Sum_probs=38.3
Q ss_pred CCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCC
Q 019405 258 ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPT 312 (341)
Q Consensus 258 ~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~ 312 (341)
...+..+..||+.++|+.-...|.|.+-+....+....+......+-..++|..+
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgn 270 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGN 270 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecC
Confidence 3567789999999999999999999999887766665554221222234555433
No 439
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=91.66 E-value=0.021 Score=48.94 Aligned_cols=134 Identities=13% Similarity=0.077 Sum_probs=87.5
Q ss_pred EecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEE-EEEeCCCeEEEEEcCCC
Q 019405 169 KVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF-VAGTNDHQVRLYDTSAQ 247 (341)
Q Consensus 169 ~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~ 247 (341)
.|-+.+.-++.++.+..+..||-. ++.......+ .....++| .-++..+ +.+...+.+.+||+.+.
T Consensus 41 ~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n~t----------g~aldm~w--DkegdvlavlAek~~piylwd~n~e 107 (615)
T KOG2247|consen 41 RWRPEGHNLAVACANTIVIYYDKA-GQVILELNPT----------GKALDMAW--DKEGDVLAVLAEKTGPIYLWDVNSE 107 (615)
T ss_pred eEecCCCceehhhhhhHHHhhhhh-cceecccCCc----------hhHhhhhh--ccccchhhhhhhcCCCeeechhhhh
Confidence 444555557777778788888853 3333333222 22445666 4455544 45667889999999874
Q ss_pred CceeEEEEec-CCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEE
Q 019405 248 RRPVMSFDFR-ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIAS 318 (341)
Q Consensus 248 ~~~~~~~~~~-~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 318 (341)
. .+.+... ...-.-+.|++....++.+...|.+.|++..+.+.+-..-.| ...+++++|.+.+..+..
T Consensus 108 y--tqqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh-~RRgtq~av~lEd~vil~ 176 (615)
T KOG2247|consen 108 Y--TQQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKH-QRRGTQIAVTLEDYVILC 176 (615)
T ss_pred h--HHHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhccc-ccceeEEEecccceeeec
Confidence 3 2222211 111122789999999999999999999999887776555445 788999999988755443
No 440
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=91.63 E-value=1.3 Score=23.92 Aligned_cols=31 Identities=29% Similarity=0.551 Sum_probs=24.3
Q ss_pred CCCceEEEEe-CCCCEEEEECCCCeEEeEEec
Q 019405 268 PDSFNIYIGN-GSGDLASVDIRTGKLLGCFIG 298 (341)
Q Consensus 268 ~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~ 298 (341)
|+++.|+++. .++.|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 5677676655 578999999999988887765
No 441
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=91.54 E-value=13 Score=35.53 Aligned_cols=68 Identities=15% Similarity=0.097 Sum_probs=49.7
Q ss_pred CCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEE----ecc--------------ccCceeEEEecCCCCEEEEEe
Q 019405 259 TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCF----IGK--------------CSGSIRSIARHPTLPIIASCG 320 (341)
Q Consensus 259 ~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~----~~~--------------~~~~i~~~~~~~~~~~l~s~~ 320 (341)
..|.++....-+..++....||+|.++|..+.+.+... ... .-.++..++|||++..++.-.
T Consensus 260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~ 339 (753)
T PF11635_consen 260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQID 339 (753)
T ss_pred CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEe
Confidence 45667777677788999999999999998877554433 100 012344588999999999999
Q ss_pred CCCcEE
Q 019405 321 LDSYLR 326 (341)
Q Consensus 321 ~dg~v~ 326 (341)
.+|.+.
T Consensus 340 ~~~~~~ 345 (753)
T PF11635_consen 340 EDGKTK 345 (753)
T ss_pred cCCCce
Confidence 999855
No 442
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.42 E-value=7.7 Score=38.22 Aligned_cols=72 Identities=18% Similarity=0.178 Sum_probs=43.0
Q ss_pred cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCce
Q 019405 257 RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL 335 (341)
Q Consensus 257 ~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 335 (341)
+..++.+..+..... ++.+...+.+-+|+.........+.. ....+++++..++++..||.+.+||...++.
T Consensus 197 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 197 IEYESLQVLYYSPTK-ILIGFNRGLVVIKDRASKYVQSAYLP------NGQLESRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred cccccceeeeecCCC-cceeeeeeeeeehhcccccchhhccc------ccccCccCCceEEEEEecCCEEeeecCCCce
Confidence 445555554443332 33344456666666544333333322 1122278889999999999999999998866
No 443
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.33 E-value=14 Score=36.64 Aligned_cols=162 Identities=9% Similarity=0.048 Sum_probs=86.3
Q ss_pred ccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCC
Q 019405 72 RKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSC 151 (341)
Q Consensus 72 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~ 151 (341)
+-|+.+.+|+.+++.....+... ...|..+....+..+-=...=..++..+.--.+.++-+.+.....+. .
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~--------shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~-~ 166 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGL--------SHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGEL-S 166 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccch--------hhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcc-c
Confidence 45799999999987766666652 23444454444332100000013444445556777776655422111 0
Q ss_pred ceEEEEEeec-CCceEEEEecCCCCEEEEeeCCCeEEE--EECCCC---ceeeecCCCCCC--------ccC--ccCCee
Q 019405 152 STVKSWNVCA-SGTIAFSKVDISEKFSLFGGKGVEVNV--WDLDKC---EKIWTAKPPPKN--------SLG--IFTPTW 215 (341)
Q Consensus 152 ~~v~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~~v~i--~d~~~~---~~~~~~~~~~~~--------~~~--~~~~~~ 215 (341)
-....+.+.. +-.|.|+....+|+.+++| .||.|+- |....+ +....+. +... ... -.+..+
T Consensus 167 ~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kic-lt~s~ls~lvPs~~~~~~~~~dp 244 (1311)
T KOG1900|consen 167 IFNTSFKISVDGVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKIC-LTKSVLSSLVPSLLSVPGSSKDP 244 (1311)
T ss_pred ccccceeeecCCceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhccccccc-CchhHHHHhhhhhhcCCCCCCCc
Confidence 0111133323 4568888877777776654 5554432 222211 1000000 0000 000 123457
Q ss_pred eeEEEEEecCCCCEEEEEeCCCeEEEEEcCC
Q 019405 216 FTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA 246 (341)
Q Consensus 216 v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 246 (341)
|..++. ...-+.+.+-+..++|.+||+..
T Consensus 245 I~qi~I--D~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 245 IRQITI--DNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ceeeEe--ccccceeeeeccCceEEEEEccC
Confidence 888998 66777888999999999999986
No 444
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=91.28 E-value=6.5 Score=31.46 Aligned_cols=140 Identities=12% Similarity=0.112 Sum_probs=75.5
Q ss_pred EEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCC---CeEEEEEcCCC--CceeE----EEEe
Q 019405 186 VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND---HQVRLYDTSAQ--RRPVM----SFDF 256 (341)
Q Consensus 186 v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~--~~~~~----~~~~ 256 (341)
-.+||+.+++... +.... ..++.+-.+ -++|++|.+|+.. ..+++++.... .+... .+.
T Consensus 48 s~~yD~~tn~~rp-l~v~t--------d~FCSgg~~--L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~- 115 (243)
T PF07250_consen 48 SVEYDPNTNTFRP-LTVQT--------DTFCSGGAF--LPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQ- 115 (243)
T ss_pred EEEEecCCCcEEe-ccCCC--------CCcccCcCC--CCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccccc-
Confidence 3468887765432 22111 122333345 5789999988752 35788875440 11011 111
Q ss_pred cCCCeEEEEEcCCCceEEEEeCCCC-EEEEECCC-CeEEeE---Eec----cccCceeEEEecCCCCEEEEEeCCCcEEE
Q 019405 257 RETPIKAVAEEPDSFNIYIGNGSGD-LASVDIRT-GKLLGC---FIG----KCSGSIRSIARHPTLPIIASCGLDSYLRF 327 (341)
Q Consensus 257 ~~~~v~~~~~~~~~~~l~~g~~dg~-i~iwd~~~-~~~~~~---~~~----~~~~~i~~~~~~~~~~~l~s~~~dg~v~i 327 (341)
...+-.+...-|||+.|+.|+...- ..+|.... ...... +.. ....---.+...|+|++++.+..+. .|
T Consensus 116 ~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i 193 (243)
T PF07250_consen 116 SGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--II 193 (243)
T ss_pred CCCccccceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EE
Confidence 2233445556689999999887743 45554421 111111 110 0012223466779999999887664 56
Q ss_pred EEcCCCceeeee
Q 019405 328 WDIKTRQLLSAV 339 (341)
Q Consensus 328 wd~~~~~~~~~~ 339 (341)
||..+.+.+.++
T Consensus 194 ~d~~~n~v~~~l 205 (243)
T PF07250_consen 194 YDYKTNTVVRTL 205 (243)
T ss_pred EeCCCCeEEeeC
Confidence 788887766554
No 445
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.20 E-value=0.13 Score=47.80 Aligned_cols=112 Identities=17% Similarity=0.146 Sum_probs=65.4
Q ss_pred eeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCC--CCc----eeEEEEecCCCeEEEEEcC---CCceEEEEeCCCCEEE
Q 019405 214 TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA--QRR----PVMSFDFRETPIKAVAEEP---DSFNIYIGNGSGDLAS 284 (341)
Q Consensus 214 ~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~--~~~----~~~~~~~~~~~v~~~~~~~---~~~~l~~g~~dg~i~i 284 (341)
+.+-.+.|. +-+...+. -.-|.+.+||+.- ++. .++........+.-+.|.| +..++..+-.++.+++
T Consensus 133 G~v~dl~fa-h~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~l 209 (1283)
T KOG1916|consen 133 GGVGDLQFA-HTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRL 209 (1283)
T ss_pred CCccccccc-ccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeE
Confidence 335555662 22222222 2335778888763 221 1222222334455666765 5567777778888888
Q ss_pred EECCCCeEEeEEeccccCceeEEE-----------ecCCCCEEEEEeCCCcEEEEEc
Q 019405 285 VDIRTGKLLGCFIGKCSGSIRSIA-----------RHPTLPIIASCGLDSYLRFWDI 330 (341)
Q Consensus 285 wd~~~~~~~~~~~~~~~~~i~~~~-----------~~~~~~~l~s~~~dg~v~iwd~ 330 (341)
....+... ..+.+| ...+..++ .+|||..|++++.||.+++|.+
T Consensus 210 L~~~ra~~-~l~rsH-s~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 210 LNINRALR-SLFRSH-SQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred eeechHHH-HHHHhc-CCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 77654322 334444 44444433 5799999999999999988875
No 446
>PRK10115 protease 2; Provisional
Probab=90.97 E-value=14 Score=34.89 Aligned_cols=110 Identities=7% Similarity=0.054 Sum_probs=63.2
Q ss_pred eEEEEecCCCCEEEEeeC-----CCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCC---
Q 019405 165 IAFSKVDISEKFSLFGGK-----GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND--- 236 (341)
Q Consensus 165 i~~~~~~~~~~~l~~~~~-----d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d--- 236 (341)
+..+.++|++++|+.+.. .-.|++.|+.+++.+...... . -..++| .++++.|+....+
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~----------~-~~~~~w--~~D~~~~~y~~~~~~~ 195 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN----------V-EPSFVW--ANDSWTFYYVRKHPVT 195 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC----------c-ceEEEE--eeCCCEEEEEEecCCC
Confidence 556788999998886533 235888898877533211111 0 134788 6677665554332
Q ss_pred ---CeEEEEEcCCCC-ceeEEEEecCCCeE-EEEEcCCCceEEEEeC---CCCEEEEEC
Q 019405 237 ---HQVRLYDTSAQR-RPVMSFDFRETPIK-AVAEEPDSFNIYIGNG---SGDLASVDI 287 (341)
Q Consensus 237 ---~~i~iwd~~~~~-~~~~~~~~~~~~v~-~~~~~~~~~~l~~g~~---dg~i~iwd~ 287 (341)
..|+.+++.+.. .....+........ .+..+.++++++..+. ++.+.+++.
T Consensus 196 ~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 196 LLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred CCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 367788888762 12334443333333 3333447777665443 457888884
No 447
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=90.90 E-value=10 Score=33.13 Aligned_cols=158 Identities=11% Similarity=0.092 Sum_probs=87.9
Q ss_pred CCceEEEEccCCeEEEeeCCCCcchh--eeeccCCCCCCCCCCceeeEeeee--ccccccccccceeEEEcccceeEEEE
Q 019405 64 NDPLLAVARKNGLTDILNPLNGDLRV--AISNAGDSGAQPEDDGIVGLHLFK--RQREESSSRSRTLLTCTTKGKASMRS 139 (341)
Q Consensus 64 ~~~~l~~~~~dg~i~iw~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~g~~~i~~ 139 (341)
..+.+++|+..|.++||++..+.... .+-.. .-..+|..+..=. ... ....++.-.-..+.||.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~------~l~~PILqv~~G~F~s~~------~~~~LaVLhP~kl~vY~ 103 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLET------QLKDPILQVECGKFVSGS------EDLQLAVLHPRKLSVYS 103 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEE------ecCCcEEEEEeccccCCC------CcceEEEecCCEEEEEE
Confidence 44679999999999999996543211 11100 1225666554321 111 11445556677788888
Q ss_pred eeecccc--cccCCceEEEEEeecCCceEEEEecC----C-CCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccC
Q 019405 140 IEVTKVS--AESSCSTVKSWNVCASGTIAFSKVDI----S-EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFT 212 (341)
Q Consensus 140 ~~~~~~~--~~~~~~~v~~~~~~~~~~i~~~~~~~----~-~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~ 212 (341)
+...... .+.....-.++...-......+.+-| . ..+|++-+.||.+.+|+-+.......++.-- .
T Consensus 104 v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~l-------l 176 (418)
T PF14727_consen 104 VSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFL-------L 176 (418)
T ss_pred EEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCC-------C
Confidence 8433221 01111112233333233334444322 2 4678889999999999987655444444311 1
Q ss_pred CeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcC
Q 019405 213 PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS 245 (341)
Q Consensus 213 ~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~ 245 (341)
|+ .+.| .+.-+.|++++.+..+..|...
T Consensus 177 Pg---Pl~Y--~~~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 177 PG---PLCY--CPRTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred Cc---CeEE--eecCCEEEEecCceeEEEecHH
Confidence 23 3466 4566678888888888888753
No 448
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=90.87 E-value=9.8 Score=32.81 Aligned_cols=151 Identities=17% Similarity=0.126 Sum_probs=84.9
Q ss_pred CEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEE
Q 019405 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF 254 (341)
Q Consensus 175 ~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 254 (341)
..++.+..+|.|.-.|.++++.++....... ...+..-.+ ..+| .++.++.++.++.+|.++++. +-..
T Consensus 69 g~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~-------~~~~~~~~~--~~~G-~i~~g~~~g~~y~ld~~~G~~-~W~~ 137 (370)
T COG1520 69 GTVYVGTRDGNIFALNPDTGLVKWSYPLLGA-------VAQLSGPIL--GSDG-KIYVGSWDGKLYALDASTGTL-VWSR 137 (370)
T ss_pred CeEEEecCCCcEEEEeCCCCcEEecccCcCc-------ceeccCceE--EeCC-eEEEecccceEEEEECCCCcE-EEEE
Confidence 3455557888999999999887765444320 011222223 2245 477888899899999877664 4444
Q ss_pred EecCC-CeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccc--cCceeEEEecCCCCEEEEEeC--CCcEEEEE
Q 019405 255 DFRET-PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC--SGSIRSIARHPTLPIIASCGL--DSYLRFWD 329 (341)
Q Consensus 255 ~~~~~-~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~s~~~--dg~v~iwd 329 (341)
..... .+..-..-.++ .++.++.++.+...|..+|+.+....... ...+..-....++ .+..+.. ++.+.-.|
T Consensus 138 ~~~~~~~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~~~~~~~~~a~~ 215 (370)
T COG1520 138 NVGGSPYYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGSDGYDGILYALN 215 (370)
T ss_pred ecCCCeEEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEecCCCcceEEEEE
Confidence 44430 11111222233 44555578999999999998876654420 1111111111233 3334434 55677778
Q ss_pred cCCCceeee
Q 019405 330 IKTRQLLSA 338 (341)
Q Consensus 330 ~~~~~~~~~ 338 (341)
+.+|+.+..
T Consensus 216 ~~~G~~~w~ 224 (370)
T COG1520 216 AEDGTLKWS 224 (370)
T ss_pred ccCCcEeee
Confidence 777776654
No 449
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.41 E-value=6.9 Score=30.25 Aligned_cols=123 Identities=11% Similarity=0.062 Sum_probs=71.1
Q ss_pred eCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEE--EecC
Q 019405 181 GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF--DFRE 258 (341)
Q Consensus 181 ~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~ 258 (341)
-.+|.-..||.++.+.+..+.-.. .-..++. ++..|+.+....+++.-|..+... ..+. ....
T Consensus 108 w~egvaf~~d~~t~~~lg~~~y~G----------eGWgLt~----d~~~LimsdGsatL~frdP~tfa~-~~~v~VT~~g 172 (262)
T COG3823 108 WKEGVAFKYDADTLEELGRFSYEG----------EGWGLTS----DDKNLIMSDGSATLQFRDPKTFAE-LDTVQVTDDG 172 (262)
T ss_pred eccceeEEEChHHhhhhcccccCC----------cceeeec----CCcceEeeCCceEEEecCHHHhhh-cceEEEEECC
Confidence 356777788888777665555432 1233433 555567666666777777665432 1111 1122
Q ss_pred CCeE---EEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEe-----------ccccCceeEEEecCCCC-EEEEE
Q 019405 259 TPIK---AVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI-----------GKCSGSIRSIARHPTLP-IIASC 319 (341)
Q Consensus 259 ~~v~---~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-----------~~~~~~i~~~~~~~~~~-~l~s~ 319 (341)
.+|. -+.| -+|...|---.+..|...|.++|+.+..+. ..+.+..+.+++.|++. ++++|
T Consensus 173 ~pv~~LNELE~-VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 173 VPVSKLNELEW-VDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred eecccccceee-eccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 2332 3344 256566666666677777788877665543 11245678899999884 55555
No 450
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=90.36 E-value=7.1 Score=30.34 Aligned_cols=104 Identities=11% Similarity=0.075 Sum_probs=61.4
Q ss_pred CEEEEEeCCCeEEEEEcCCCC-ceeEEEEecCCCeEEEEEcCCCceEEEEeCC---C---CEEEE---ECC--CCeEEe-
Q 019405 228 RKFVAGTNDHQVRLYDTSAQR-RPVMSFDFRETPIKAVAEEPDSFNIYIGNGS---G---DLASV---DIR--TGKLLG- 294 (341)
Q Consensus 228 ~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d---g---~i~iw---d~~--~~~~~~- 294 (341)
+.|..+...+.|.+|++.... .++..+.. -+.|..+.++..|.+|++-=.+ . .+|+| ... ..+++.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 344444667889999998433 33455543 3789999999999999985332 2 46665 211 111111
Q ss_pred EEec--------------------cccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCC
Q 019405 295 CFIG--------------------KCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR 333 (341)
Q Consensus 295 ~~~~--------------------~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 333 (341)
.+-| +-..++.+++..|-..-|+.|+ ++.+.+|.+...
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~ 165 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQ 165 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEE
Confidence 1112 1134677788777544455554 447888877643
No 451
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=90.19 E-value=11 Score=32.42 Aligned_cols=191 Identities=14% Similarity=0.138 Sum_probs=99.2
Q ss_pred eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCC---ceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecC
Q 019405 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASG---TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAK 201 (341)
Q Consensus 125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~---~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~ 201 (341)
.+.++..+|.+.-.+.+... .+|...... .+..-.+..+|+ ++.++.++.++.+|.++++..+...
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~----------~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~ 138 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGL----------VKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRN 138 (370)
T ss_pred eEEEecCCCcEEEEeCCCCc----------EEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEe
Confidence 56666777755555543222 235433221 111112222555 7778888899999999999998877
Q ss_pred CCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecC---CCeEEEEEcCCCceEEEEeC
Q 019405 202 PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE---TPIKAVAEEPDSFNIYIGNG 278 (341)
Q Consensus 202 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~g~~ 278 (341)
... . ......... ....+...+.++.+...|..++.. +-...... ..+..--. .....++.+..
T Consensus 139 ~~~-~------~~~~~~~v~----~~~~v~~~s~~g~~~al~~~tG~~-~W~~~~~~~~~~~~~~~~~-~~~~~vy~~~~ 205 (370)
T COG1520 139 VGG-S------PYYASPPVV----GDGTVYVGTDDGHLYALNADTGTL-KWTYETPAPLSLSIYGSPA-IASGTVYVGSD 205 (370)
T ss_pred cCC-C------eEEecCcEE----cCcEEEEecCCCeEEEEEccCCcE-EEEEecCCccccccccCce-eecceEEEecC
Confidence 654 0 011222122 223444444677777777776653 22221111 00110000 12234555555
Q ss_pred --CCCEEEEECCCCeEEeEEeccccCc---eeEEEecCCC-----CEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 279 --SGDLASVDIRTGKLLGCFIGKCSGS---IRSIARHPTL-----PIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 279 --dg~i~iwd~~~~~~~~~~~~~~~~~---i~~~~~~~~~-----~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
++.+.-.|..+|......+.++.-. +........+ .-+..++.++.+...|..+|+.+.+.
T Consensus 206 ~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~ 276 (370)
T COG1520 206 GYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSF 276 (370)
T ss_pred CCcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEE
Confidence 6678888888888776643221111 1001111111 12356667777888888888877654
No 452
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=89.77 E-value=1.1 Score=22.61 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=21.7
Q ss_pred CEEEEeeCCCeEEEEECCCCceeeec
Q 019405 175 KFSLFGGKGVEVNVWDLDKCEKIWTA 200 (341)
Q Consensus 175 ~~l~~~~~d~~v~i~d~~~~~~~~~~ 200 (341)
..++.++.++.+..+|.++|+.++.+
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 36777888999999999999888764
No 453
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=89.67 E-value=12 Score=31.75 Aligned_cols=164 Identities=15% Similarity=0.154 Sum_probs=89.8
Q ss_pred CceEEEEecCCCCEEEEeeCCCe------EEEEECCC--C--cee-----eecCCCCCCccCccCCeeeeEEEEEecCCC
Q 019405 163 GTIAFSKVDISEKFSLFGGKGVE------VNVWDLDK--C--EKI-----WTAKPPPKNSLGIFTPTWFTSAAFLSIDDH 227 (341)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~~d~~------v~i~d~~~--~--~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 227 (341)
+.+..+.+.+++..+++.+.++. +..+++.. + ..+ ..+.......+.. ..--..++++ .+++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~-~~~D~Egi~~--~~~g 96 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPK-NGLDPEGIAV--PPDG 96 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCc-CCCChhHeEE--ecCC
Confidence 45677788766666666677776 55555543 1 001 1111111111100 0012456777 6788
Q ss_pred CEEEEEeCC------CeEEEEEcCCCCceeEEE---------------EecCCCeEEEEEcCCCceEEEEeCC-----C-
Q 019405 228 RKFVAGTND------HQVRLYDTSAQRRPVMSF---------------DFRETPIKAVAEEPDSFNIYIGNGS-----G- 280 (341)
Q Consensus 228 ~~l~~~~~d------~~i~iwd~~~~~~~~~~~---------------~~~~~~v~~~~~~~~~~~l~~g~~d-----g- 280 (341)
.++++.-.+ ..|+.++.. +.. ...+ ...+...-+++++|+|+.|+++... +
T Consensus 97 ~~~is~E~~~~~~~~p~I~~~~~~-G~~-~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~ 174 (326)
T PF13449_consen 97 SFWISSEGGRTGGIPPRIRRFDLD-GRV-IRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGP 174 (326)
T ss_pred CEEEEeCCccCCCCCCEEEEECCC-Ccc-cceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCc
Confidence 888887777 788888866 332 2222 1134467889999999966665432 2
Q ss_pred -C-------EEE--EECCC-CeE----EeEEecc----ccCceeEEEecCCCCEEEEEe-----CCCcEEEEEcC
Q 019405 281 -D-------LAS--VDIRT-GKL----LGCFIGK----CSGSIRSIARHPTLPIIASCG-----LDSYLRFWDIK 331 (341)
Q Consensus 281 -~-------i~i--wd~~~-~~~----~~~~~~~----~~~~i~~~~~~~~~~~l~s~~-----~dg~v~iwd~~ 331 (341)
. ++| ||..+ ++. .+.+... ....|..+.+.+++++|+.-- ....++|+.+.
T Consensus 175 ~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 175 RANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred ccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence 1 444 45544 322 2222210 146788999999998766432 23455555443
No 454
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=89.42 E-value=14 Score=32.26 Aligned_cols=147 Identities=11% Similarity=0.036 Sum_probs=78.6
Q ss_pred eEEEEecCCCCEEEEeeCCCeEEEEECCCCcee-eecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEE
Q 019405 165 IAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI-WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD 243 (341)
Q Consensus 165 i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd 243 (341)
...+...+++.+++.+.....++-||- ++.. .....+. ...+..+.+ .+++.+++++ .+|.+.. .
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~--------~~~l~~v~~--~~dg~l~l~g-~~G~l~~-S 306 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRAS--------ARRIQNMGW--RADGGLWLLT-RGGGLYV-S 306 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCC--------ccceeeeeE--cCCCCEEEEe-CCceEEE-e
Confidence 344556677777776555433334443 2221 1111111 244788888 7788777665 5666543 2
Q ss_pred cCCCCc----eeEEEEe--cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEe--ccccCceeEEEecCCCCE
Q 019405 244 TSAQRR----PVMSFDF--RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI--GKCSGSIRSIARHPTLPI 315 (341)
Q Consensus 244 ~~~~~~----~~~~~~~--~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~ 315 (341)
...++. ....... ....+.++.|.+++..+++ +..|.+.... ..|+.-...+ ..-....+.+.|.++++.
T Consensus 307 ~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~-G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g 384 (398)
T PLN00033 307 KGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAA-GGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKG 384 (398)
T ss_pred cCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEE-ECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCce
Confidence 222221 1222221 1234888999888766555 4567666553 3344322222 111457889999877666
Q ss_pred EEEEeCCCcEEEE
Q 019405 316 IASCGLDSYLRFW 328 (341)
Q Consensus 316 l~s~~~dg~v~iw 328 (341)
+++| .+|.|.-|
T Consensus 385 ~~~G-~~G~il~~ 396 (398)
T PLN00033 385 FVLG-NDGVLLRY 396 (398)
T ss_pred EEEe-CCcEEEEe
Confidence 6655 67766544
No 455
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=89.24 E-value=13 Score=31.60 Aligned_cols=107 Identities=12% Similarity=-0.078 Sum_probs=53.7
Q ss_pred eEEEEecCCCCEEEEeeCCCeEEEEECCCCce---eeecCCCCCCccCccCCeeeeEEEEEec--CCCCEEEEEeCC---
Q 019405 165 IAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK---IWTAKPPPKNSLGIFTPTWFTSAAFLSI--DDHRKFVAGTND--- 236 (341)
Q Consensus 165 i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~l~~~~~d--- 236 (341)
-..|+|.|+++++++ -..|.|++++ ..+.. +..+... ..........++++|. .++.+.+..+..
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v-----~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~ 76 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEV-----FADGERGLLGIAFHPDFASNGYLYVYYTNADED 76 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTT-----BTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TS
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccc-----cccccCCcccceeccccCCCCEEEEEEEcccCC
Confidence 467899999877665 6699999999 44433 2222211 1112355788999431 123333333321
Q ss_pred -----CeEEEEEcCCC-------CceeEEEEe---cCCCeEEEEEcCCCceEEEEeC
Q 019405 237 -----HQVRLYDTSAQ-------RRPVMSFDF---RETPIKAVAEEPDSFNIYIGNG 278 (341)
Q Consensus 237 -----~~i~iwd~~~~-------~~~~~~~~~---~~~~v~~~~~~~~~~~l~~g~~ 278 (341)
..|.-|..... +..+..+.. ....-..|.|.|+|.+.++.+.
T Consensus 77 ~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~ 133 (331)
T PF07995_consen 77 GGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD 133 (331)
T ss_dssp SSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred CCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence 23444544433 111112222 2234567999999966555443
No 456
>PRK05560 DNA gyrase subunit A; Validated
Probab=89.21 E-value=22 Score=34.36 Aligned_cols=251 Identities=13% Similarity=0.066 Sum_probs=118.3
Q ss_pred CceEEEEccCCeEEEeeCCCCcchheeeccCC-CCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeec
Q 019405 65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGD-SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT 143 (341)
Q Consensus 65 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~ 143 (341)
.+.+++-+.+|.|+--...+..... ...... ......++.+......+... .++..+..|.+....+..-
T Consensus 498 E~v~vllS~~GyIKri~~~~~~~~~-~~~~g~~~~klKe~D~l~~~~~~~t~d--------~LllfTs~Grv~~l~v~~i 568 (805)
T PRK05560 498 EDVVVTLTHGGYIKRTPLDEYRAQR-RGGKGVSGAKTKEDDFVEHLFVASTHD--------TLLFFTNRGRVYRLKVYEI 568 (805)
T ss_pred CCEEEEEeCCCEEEEcchhhhhhhc-ccCCCccccccCCCCeeEEEEEecCCC--------eEEEEecCCeEEEEEhhhC
Confidence 4468888899999988664422100 000000 00001234454444444444 6777777787766655433
Q ss_pred ccccccCCce-E-EEEEeecCCc-eEEEEecC--CCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeE
Q 019405 144 KVSAESSCST-V-KSWNVCASGT-IAFSKVDI--SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTS 218 (341)
Q Consensus 144 ~~~~~~~~~~-v-~~~~~~~~~~-i~~~~~~~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 218 (341)
+.......|. + .+.....+.. +.++.+.. +...++..+.+|.++--++..-..... . ....+.+.....+..
T Consensus 569 P~~~~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r--~-G~~~ikLke~D~lv~ 645 (805)
T PRK05560 569 PEASRTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRS--N-GIIAINLDEGDELIG 645 (805)
T ss_pred cCCCcCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhccc--C-CceeeccCCCCEEEE
Confidence 3221111121 1 1122333333 44444542 567888899999998777643221110 0 000001111133444
Q ss_pred EEEEecCCCCEEEEEeCCCeEEEEEcCCCC--------ceeEEEEecCCCeEE-EEEcCCCceEEEEeCCCCEEEEECCC
Q 019405 219 AAFLSIDDHRKFVAGTNDHQVRLYDTSAQR--------RPVMSFDFRETPIKA-VAEEPDSFNIYIGNGSGDLASVDIRT 289 (341)
Q Consensus 219 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~~~~~~v~~-~~~~~~~~~l~~g~~dg~i~iwd~~~ 289 (341)
+.. ......++..+..|.+..+....-. .....+.. ...|.+ +.+.++...++..+..|.++...+..
T Consensus 646 v~~--~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~-~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e 722 (805)
T PRK05560 646 VRL--TDGDDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLRE-GDEVVSMDVVREDSQEILTVTENGYGKRTPVSE 722 (805)
T ss_pred EEE--eCCCCEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCC-CCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHH
Confidence 444 2344556666777877766654311 01122222 223433 34444444677788888888775431
Q ss_pred ---------CeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcC
Q 019405 290 ---------GKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331 (341)
Q Consensus 290 ---------~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~ 331 (341)
|.....+... .+.+..+....+...++..+.+|.+..++..
T Consensus 723 ~~~~~R~~kG~~~lkl~~~-~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~~ 772 (805)
T PRK05560 723 YRLQGRGGKGVITIKITEK-NGKLVGALPVDDDDEIMLITDSGKLIRTRVS 772 (805)
T ss_pred hhccCCCCCcEEeeeccCC-CCeEEEEEEecCCCeEEEEecCCeEEEEEHH
Confidence 1122222221 2344443333333445566677777666654
No 457
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.17 E-value=20 Score=35.80 Aligned_cols=142 Identities=10% Similarity=0.169 Sum_probs=80.4
Q ss_pred eCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEE-ec-----CCCCEEEEEeCCCeEEEEEcCCCCc--ee-
Q 019405 181 GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFL-SI-----DDHRKFVAGTNDHQVRLYDTSAQRR--PV- 251 (341)
Q Consensus 181 ~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~-----~~~~~l~~~~~d~~i~iwd~~~~~~--~~- 251 (341)
+-|+.+.+|+.+++.....+...... |..|... |. |.=++++.-..--.|.++-+.-.+. ..
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~sht---------Il~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~ 166 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHT---------ILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELS 166 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhh---------heeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccc
Confidence 45778999999987666655543321 3333322 11 1112333323333455554332111 01
Q ss_pred -----EEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEE--CCCC---e-E----------------EeEEeccccCce
Q 019405 252 -----MSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVD--IRTG---K-L----------------LGCFIGKCSGSI 304 (341)
Q Consensus 252 -----~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd--~~~~---~-~----------------~~~~~~~~~~~i 304 (341)
.++......|.++....+|+.+++|- ||.|+-.- ...+ + + +..+.+.+..+|
T Consensus 167 ~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~-dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI 245 (1311)
T KOG1900|consen 167 IFNTSFKISVDGVSVNCITYTENGRIFFAGR-DGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPI 245 (1311)
T ss_pred ccccceeeecCCceEEEEEeccCCcEEEeec-CCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcc
Confidence 12222345688888788888777654 55444321 1111 1 0 112332336799
Q ss_pred eEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405 305 RSIARHPTLPIIASCGLDSYLRFWDIKT 332 (341)
Q Consensus 305 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 332 (341)
..+........+.+-+..|.|.+||+..
T Consensus 246 ~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 246 RQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eeeEeccccceeeeeccCceEEEEEccC
Confidence 9999988888999999999999999976
No 458
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.10 E-value=11 Score=30.73 Aligned_cols=227 Identities=13% Similarity=0.098 Sum_probs=109.6
Q ss_pred EEEEccCCe-EEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEccc------ceeEEEEe
Q 019405 68 LAVARKNGL-TDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK------GKASMRSI 140 (341)
Q Consensus 68 l~~~~~dg~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------g~~~i~~~ 140 (341)
++.+-.-|+ ..++|....+...++... .......--.|+.++ .++.++++ |.+-||+.
T Consensus 83 vafARrPGtf~~vfD~~~~~~pv~~~s~-------~~RHfyGHGvfs~dG--------~~LYATEndfd~~rGViGvYd~ 147 (366)
T COG3490 83 VAFARRPGTFAMVFDPNGAQEPVTLVSQ-------EGRHFYGHGVFSPDG--------RLLYATENDFDPNRGVIGVYDA 147 (366)
T ss_pred EEEEecCCceEEEECCCCCcCcEEEecc-------cCceeecccccCCCC--------cEEEeecCCCCCCCceEEEEec
Confidence 666666666 678899887776665541 223333333444444 45544443 66777776
Q ss_pred eecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCC------------------CeEEEEECCCCceeeecCC
Q 019405 141 EVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKG------------------VEVNVWDLDKCEKIWTAKP 202 (341)
Q Consensus 141 ~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------------------~~v~i~d~~~~~~~~~~~~ 202 (341)
... -..+-.|.. ++-.-..+.+.+||+.++.+... -.+.+.|..+++.+.+..-
T Consensus 148 r~~-------fqrvgE~~t-~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~L 219 (366)
T COG3490 148 REG-------FQRVGEFST-HGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTL 219 (366)
T ss_pred ccc-------cceeccccc-CCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccC
Confidence 421 113333433 23334567788899988865321 1122333333333322211
Q ss_pred CCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeE----EEEEcCCCCceeEEEEe-------cCCCeEEEEEcCCCc
Q 019405 203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV----RLYDTSAQRRPVMSFDF-------RETPIKAVAEEPDSF 271 (341)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i----~iwd~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~ 271 (341)
+.. .+...+..++. .+++..++-+-..|.- -+--......++.-+.. -...|-+++.+.+..
T Consensus 220 p~~-----l~~lSiRHld~--g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~g 292 (366)
T COG3490 220 PAS-----LRQLSIRHLDI--GRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDG 292 (366)
T ss_pred chh-----hhhcceeeeee--CCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCC
Confidence 100 01133555555 5555443332222110 00000000111222211 113466777776555
Q ss_pred eEEEEe-CCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEE
Q 019405 272 NIYIGN-GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWD 329 (341)
Q Consensus 272 ~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd 329 (341)
+++..+ ..+...+||..+|..+..-.-. ....++- ...-++..+.+|.+.++.
T Consensus 293 lV~lTSP~GN~~vi~da~tG~vv~~a~l~---daaGva~--~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 293 LVALTSPRGNRAVIWDAATGAVVSEAALP---DAAGVAA--AKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred eEEEecCCCCeEEEEEcCCCcEEeccccc---cccccee--ccCceEEecCCceEEecc
Confidence 555544 4566889999999887644322 1222332 333356666777777664
No 459
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=89.09 E-value=14 Score=31.88 Aligned_cols=101 Identities=17% Similarity=0.161 Sum_probs=55.6
Q ss_pred eeEEEEEecCCCCEEEEEe-----------CCC-eEEEEEcCCC--Cc-eeEEEEecCCCeEEEEEcCCCceEEEEeCCC
Q 019405 216 FTSAAFLSIDDHRKFVAGT-----------NDH-QVRLYDTSAQ--RR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGSG 280 (341)
Q Consensus 216 v~~~~~~~~~~~~~l~~~~-----------~d~-~i~iwd~~~~--~~-~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg 280 (341)
...++| .++|+++++-. ..+ .|.+++-.++ +. ....+...-.....+++.+++ |+++....
T Consensus 16 P~~ia~--d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 16 PIAVCF--DERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CceeeE--CCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 567788 88888777643 223 6777765432 21 123333333456789999988 44444443
Q ss_pred CEEEEECCC-------CeEE-eEEecc---ccCceeEEEecCCCCEEEEEe
Q 019405 281 DLASVDIRT-------GKLL-GCFIGK---CSGSIRSIARHPTLPIIASCG 320 (341)
Q Consensus 281 ~i~iwd~~~-------~~~~-~~~~~~---~~~~i~~~~~~~~~~~l~s~~ 320 (341)
..++.|... .+.+ ..+... +......++|.|||.+.++-+
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 333434431 1112 223221 123477899999998766555
No 460
>PHA02790 Kelch-like protein; Provisional
Probab=88.66 E-value=18 Score=32.59 Aligned_cols=144 Identities=10% Similarity=-0.066 Sum_probs=67.0
Q ss_pred CCCEEEEeeCCC-----eEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCC--CeEEEEEcC
Q 019405 173 SEKFSLFGGKGV-----EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND--HQVRLYDTS 245 (341)
Q Consensus 173 ~~~~l~~~~~d~-----~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d--~~i~iwd~~ 245 (341)
++.++++||.++ .+..||..+.+-.. +...... ......+.. ++...+.|+.+ ..+..||..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~-~~~m~~~------r~~~~~v~~----~~~iYviGG~~~~~sve~ydp~ 339 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIP-IPPMNSP------RLYASGVPA----NNKLYVVGGLPNPTSVERWFHG 339 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEE-CCCCCch------hhcceEEEE----CCEEEEECCcCCCCceEEEECC
Confidence 345566776542 57778887654222 1111100 011222233 66777777754 357778865
Q ss_pred CCCc-eeEEEEecCCCeEEEEEcCCCceEEEEeCCC---CEEEEECCCCeEEeEEeccc-cCceeEEEecCCCCEEEEEe
Q 019405 246 AQRR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGSG---DLASVDIRTGKLLGCFIGKC-SGSIRSIARHPTLPIIASCG 320 (341)
Q Consensus 246 ~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg---~i~iwd~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~s~~ 320 (341)
+.+- .+..+.........+ .-+|+..+.|+.++ .+..||.++.+....-.... .... ++ ..-++.+.+.|+
T Consensus 340 ~n~W~~~~~l~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~-~~~~~~IYv~GG 415 (480)
T PHA02790 340 DAAWVNMPSLLKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CA-LVFGRRLFLVGR 415 (480)
T ss_pred CCeEEECCCCCCCCcccEEE--EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eE-EEECCEEEEECC
Confidence 4320 111111011111112 22666777777553 47789988765433211110 1111 11 123555556553
Q ss_pred CCCcEEEEEcCCCc
Q 019405 321 LDSYLRFWDIKTRQ 334 (341)
Q Consensus 321 ~dg~v~iwd~~~~~ 334 (341)
.+.+||.++.+
T Consensus 416 ---~~e~ydp~~~~ 426 (480)
T PHA02790 416 ---NAEFYCESSNT 426 (480)
T ss_pred ---ceEEecCCCCc
Confidence 46677776543
No 461
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.48 E-value=25 Score=33.99 Aligned_cols=21 Identities=14% Similarity=0.116 Sum_probs=17.8
Q ss_pred CceEEEEccCCeEEEeeCCCC
Q 019405 65 DPLLAVARKNGLTDILNPLNG 85 (341)
Q Consensus 65 ~~~l~~~~~dg~i~iw~~~~~ 85 (341)
|+.|..|+.+|.+.+|.+.+.
T Consensus 26 ~~~l~vGt~~G~L~lY~i~~~ 46 (877)
T KOG2063|consen 26 GNHLYVGTRDGDLYLYSIYER 46 (877)
T ss_pred CCEEEEEcCCCcEEEEecccc
Confidence 346999999999999998754
No 462
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=88.01 E-value=1.4 Score=23.34 Aligned_cols=29 Identities=14% Similarity=0.217 Sum_probs=24.3
Q ss_pred EEEEeeCCCeEEEEECCCCceeeecCCCC
Q 019405 176 FSLFGGKGVEVNVWDLDKCEKIWTAKPPP 204 (341)
Q Consensus 176 ~l~~~~~d~~v~i~d~~~~~~~~~~~~~~ 204 (341)
.++.++.+|.|...|.++|+.++.+....
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~~ 30 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQTGP 30 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEESSS
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeCCC
Confidence 45666999999999999999999887643
No 463
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=87.93 E-value=23 Score=32.94 Aligned_cols=258 Identities=9% Similarity=0.050 Sum_probs=126.3
Q ss_pred cCCCCCceEEEEccCCeEEEeeCC-CCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccc-eeEE
Q 019405 60 DDSQNDPLLAVARKNGLTDILNPL-NGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG-KASM 137 (341)
Q Consensus 60 ~~~~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g-~~~i 137 (341)
+.+|+.+.+-.|=....|.-|=+. +.+.+..+.- +...-+.|+..+..... ....+.|-.++ ..++
T Consensus 34 ~~s~~sn~IdiGIS~S~ISsYIi~PTPKLiwsypi-------~pt~iV~~~dV~~~~~~-----~~~~~~glt~rKk~~l 101 (670)
T PF10395_consen 34 DFSPDSNQIDIGISGSAISSYIIKPTPKLIWSYPI-------SPTTIVECCDVLEKSDG-----KKLYCVGLTERKKFKL 101 (670)
T ss_pred ccCCCCceEEEEeccchhhheecCCCcceeEeecc-------CcCceEEEEEeEecCCC-----cEEEEEEEeeCCeeEE
Confidence 334444455555444455444332 3444444443 23355556666544331 11455553443 3455
Q ss_pred EEeeeccc--c-cccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceee--ecCCCCCCccCccC
Q 019405 138 RSIEVTKV--S-AESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIW--TAKPPPKNSLGIFT 212 (341)
Q Consensus 138 ~~~~~~~~--~-~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~--~~~~~~~~~~~~~~ 212 (341)
-.+..... . ..........+...-...+..+.+.++++.+++...+|.|.+||...+.... .+..... ..+..
T Consensus 102 l~i~~~~~~~~~~~~~~e~~~~~~~kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~--~~v~y 179 (670)
T PF10395_consen 102 LLIERKVGSTEDGTVNSETTNEFELKLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSS--INVSY 179 (670)
T ss_pred EEEEccCccccccccCccccceEEEEcccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccc--cceeh
Confidence 55544311 1 1112233445555557789999999999999999999999999993322211 1111110 00100
Q ss_pred CeeeeEEEEEecCCCCEEEEEeC-C---CeEEEEEcCCCCceeEEEE---ecCCCeEEEEEcC-CCceEEEEeCCCCEEE
Q 019405 213 PTWFTSAAFLSIDDHRKFVAGTN-D---HQVRLYDTSAQRRPVMSFD---FRETPIKAVAEEP-DSFNIYIGNGSGDLAS 284 (341)
Q Consensus 213 ~~~v~~~~~~~~~~~~~l~~~~~-d---~~i~iwd~~~~~~~~~~~~---~~~~~v~~~~~~~-~~~~l~~g~~dg~i~i 284 (341)
...|..... .....++++-+. + -..+++.+......+..+. .+........|+. +|. |+-= .++.|.+
T Consensus 180 s~fv~~~~~--~~~~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~-LY~l-~~~~i~~ 255 (670)
T PF10395_consen 180 SKFVNDFEL--ENGKDLLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGK-LYQL-SKKTISS 255 (670)
T ss_pred hhhhccccc--ccCCceEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCE-EEEE-eCCEEEE
Confidence 111221111 112344444443 2 2467777732222233333 2222333333433 443 3322 6779999
Q ss_pred EECCCCeEEeEEecc---cc--CceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceee
Q 019405 285 VDIRTGKLLGCFIGK---CS--GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLS 337 (341)
Q Consensus 285 wd~~~~~~~~~~~~~---~~--~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 337 (341)
|++.+.+...++.-. .. ..+.++.--...+.|++ .++.|++.|+.-...+.
T Consensus 256 ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~s~nRvLLs--~~nkIyLld~~~~siLs 311 (670)
T PF10395_consen 256 YSIPNFQIQKTISLPSIIDKESDDLVSLKPPSPNRVLLS--VNNKIYLLDLKFESILS 311 (670)
T ss_pred EEcCCceEEEEEEechhhccccccceEeecCCCCeEEEE--cCCEEEEEeehhhhhhh
Confidence 999888876665432 01 23334432223334443 45689999987544443
No 464
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=87.66 E-value=1.5 Score=22.08 Aligned_cols=25 Identities=24% Similarity=0.163 Sum_probs=21.4
Q ss_pred EEEEEeCCCcEEEEEcCCCceeeee
Q 019405 315 IIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 315 ~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
.++.++.+|.+..+|.++|+.+.++
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEEc
Confidence 5777889999999999999988764
No 465
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=87.52 E-value=8.3 Score=27.44 Aligned_cols=112 Identities=13% Similarity=0.111 Sum_probs=70.1
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCCC-------ceeEEEEecCCCeEEEEEcC-----CCceEEEEeCCCCEEEEECCCCe
Q 019405 224 IDDHRKFVAGTNDHQVRLYDTSAQR-------RPVMSFDFRETPIKAVAEEP-----DSFNIYIGNGSGDLASVDIRTGK 291 (341)
Q Consensus 224 ~~~~~~l~~~~~d~~i~iwd~~~~~-------~~~~~~~~~~~~v~~~~~~~-----~~~~l~~g~~dg~i~iwd~~~~~ 291 (341)
......|++++.-|+|.|++..... .++..+. -...|++++-.+ +...|+.|+ ...+..||+.+..
T Consensus 7 DG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N~ 84 (136)
T PF14781_consen 7 DGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENNS 84 (136)
T ss_pred CCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccCc
Confidence 4555678888888999999865421 1244444 345777776543 235666665 5579999998776
Q ss_pred EEeEEeccccCceeEEEecC---CCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 292 LLGCFIGKCSGSIRSIARHP---TLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 292 ~~~~~~~~~~~~i~~~~~~~---~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
-+.--.. .+.|+++.+-. ...-|+..+-+..|.-||..-.+...++
T Consensus 85 d~Fyke~--~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 85 DLFYKEV--PDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred hhhhhhC--ccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence 5542222 46677777643 1223555556677888887765655554
No 466
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=87.40 E-value=2.1 Score=22.98 Aligned_cols=29 Identities=10% Similarity=0.153 Sum_probs=21.7
Q ss_pred CCCCEEEEEe-CCCcEEEEEcCCCceeeee
Q 019405 311 PTLPIIASCG-LDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 311 ~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~ 339 (341)
|++++|..+. .++.|.++|..+++.+.++
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i 30 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATI 30 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence 5667555544 5789999999998887765
No 467
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=87.06 E-value=29 Score=33.30 Aligned_cols=224 Identities=10% Similarity=0.056 Sum_probs=117.1
Q ss_pred CCCCCceeeeecCCCCeEEEEEecCccCccceee-----eccCCCCCceeEEEeccCCCCCceEEEEccC---CeEEEee
Q 019405 10 PGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVE-----RWGDPHSSNCVLAASIDDSQNDPLLAVARKN---GLTDILN 81 (341)
Q Consensus 10 ~~~~~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~-----~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~d---g~i~iw~ 81 (341)
|+.+.--+++....|.+++|....+ +.+.... .++..+.-++..++++... |+.++.++.+ +.|++|.
T Consensus 58 P~~~K~A~i~Vt~nG~l~l~yQ~~~--~~~~~~s~~el~s~~~s~~~ithAsi~~~~~--g~~ili~t~s~~s~~l~~yr 133 (753)
T PF11635_consen 58 PGPAKSACIAVTRNGLLKLWYQKPD--GQWNESSTAELESLGSSDDLITHASIAPSDN--GKSILIATYSSLSKQLRFYR 133 (753)
T ss_pred CCCCceEEEEEecCCeEEEEEEcCC--CccceeehhhhccccccccceeeceeeecCC--CCEEEEEEccccCCceEEEE
Confidence 3444456889999999999988443 2221211 1233455566666663333 3344444444 7899885
Q ss_pred CCC--C--------cchheeec-cC-CC---C--CC--------CCCCceeeEeeeeccccccccccceeEEEcc----c
Q 019405 82 PLN--G--------DLRVAISN-AG-DS---G--AQ--------PEDDGIVGLHLFKRQREESSSRSRTLLTCTT----K 132 (341)
Q Consensus 82 ~~~--~--------~~~~~~~~-~~-~~---~--~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~ 132 (341)
+.- + +....+.. +. .. . .. ..-..++.+.+.+..... ......+++... .
T Consensus 134 v~I~W~~~~~~~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~-~~~p~Ili~~~~~~~~~ 212 (753)
T PF11635_consen 134 VQIDWNAKPQQIDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDK-DSAPEILIVYSSPNTPS 212 (753)
T ss_pred EEEeccCcCccCCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCC-CCCCeEEEEEEcCCCCC
Confidence 431 1 11111111 00 00 0 00 012355667776622110 112223444332 3
Q ss_pred ceeEEEEeeecccc-------------cccCCceEEEEEe----ecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCc
Q 019405 133 GKASMRSIEVTKVS-------------AESSCSTVKSWNV----CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE 195 (341)
Q Consensus 133 g~~~i~~~~~~~~~-------------~~~~~~~v~~~~~----~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~ 195 (341)
..+.-|.+...... ..........|.. ...+.|.++....-+..++....||+|.++|-.+.+
T Consensus 213 SiI~RweL~~~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~ 292 (753)
T PF11635_consen 213 SIIERWELREEQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMK 292 (753)
T ss_pred cEEEEEEEEccCcccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEecccCcEEEEEEcCCeEEEEecCcch
Confidence 46788887665321 1111222223322 223567888887788899999999999999998876
Q ss_pred eeeec----CCCC------CCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEE
Q 019405 196 KIWTA----KPPP------KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVR 240 (341)
Q Consensus 196 ~~~~~----~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~ 240 (341)
.+... .... ...+.......+..++| +|++.-++.-..+|.+.
T Consensus 293 ~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vaf--SPt~c~~v~~~~~~~~~ 345 (753)
T PF11635_consen 293 ELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAF--SPTMCSLVQIDEDGKTK 345 (753)
T ss_pred hhcccccccCCccccccccccccccccCCCCceEEE--CcccceEEEEecCCCce
Confidence 66544 1111 00011111123445778 88888888888888865
No 468
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=86.60 E-value=3.3 Score=21.90 Aligned_cols=29 Identities=21% Similarity=0.193 Sum_probs=18.7
Q ss_pred cCCCeEEEEEcCCCceEEEEe-CC--CCEEEE
Q 019405 257 RETPIKAVAEEPDSFNIYIGN-GS--GDLASV 285 (341)
Q Consensus 257 ~~~~v~~~~~~~~~~~l~~g~-~d--g~i~iw 285 (341)
....-....|+|||+.|+-.+ .+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 445567889999998776544 44 555555
No 469
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=86.47 E-value=22 Score=31.32 Aligned_cols=31 Identities=19% Similarity=0.422 Sum_probs=25.4
Q ss_pred CceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405 302 GSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (341)
Q Consensus 302 ~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 332 (341)
..|.+++..+..+.|++.+.+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3499999999999999999999999999974
No 470
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=86.44 E-value=12 Score=28.20 Aligned_cols=31 Identities=13% Similarity=0.128 Sum_probs=25.3
Q ss_pred CCeEEEEEcCCC------ceEEEEeCCCCEEEEECCC
Q 019405 259 TPIKAVAEEPDS------FNIYIGNGSGDLASVDIRT 289 (341)
Q Consensus 259 ~~v~~~~~~~~~------~~l~~g~~dg~i~iwd~~~ 289 (341)
..+.+++|||.| -+|++-+.++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 378899999954 4688889999999998763
No 471
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=86.23 E-value=17 Score=29.61 Aligned_cols=168 Identities=10% Similarity=-0.005 Sum_probs=102.5
Q ss_pred CCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCE
Q 019405 150 SCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRK 229 (341)
Q Consensus 150 ~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 229 (341)
.+.....|-+..+..-..++-.+||..-+++...+.|--.|..+++....--... ..-..+.. .|++..
T Consensus 49 ~~~s~~~fpvp~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~G---------a~Phgiv~--gpdg~~ 117 (353)
T COG4257 49 PDGSSAEFPVPNGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSG---------ASPHGIVV--GPDGSA 117 (353)
T ss_pred CCCccceeccCCCCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCC---------CCCceEEE--CCCCCe
Confidence 4445566666666777788889999888888888888888888887654433222 11334445 677776
Q ss_pred EEEEeCCCeEEEEEcCCCCceeEEEEe----cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCcee
Q 019405 230 FVAGTNDHQVRLYDTSAQRRPVMSFDF----RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIR 305 (341)
Q Consensus 230 l~~~~~d~~i~iwd~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~ 305 (341)
-++-+.. -|.-.|-++.+ +..+.. .........|.+.|.+-+++... .---.|.. ...+..+.......-+
T Consensus 118 Witd~~~-aI~R~dpkt~e--vt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G-~yGrLdPa-~~~i~vfpaPqG~gpy 192 (353)
T COG4257 118 WITDTGL-AIGRLDPKTLE--VTRFPLPLEHADANLETAVFDPWGNLWFTGQIG-AYGRLDPA-RNVISVFPAPQGGGPY 192 (353)
T ss_pred eEecCcc-eeEEecCcccc--eEEeecccccCCCcccceeeCCCccEEEeeccc-cceecCcc-cCceeeeccCCCCCCc
Confidence 6664433 45556665544 333322 23456778899999888887632 11111211 1223444443345567
Q ss_pred EEEecCCCCEEEEEeCCCcEEEEEcCCC
Q 019405 306 SIARHPTLPIIASCGLDSYLRFWDIKTR 333 (341)
Q Consensus 306 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 333 (341)
.|+..|+|....+.-.+..|-.-|..++
T Consensus 193 Gi~atpdGsvwyaslagnaiaridp~~~ 220 (353)
T COG4257 193 GICATPDGSVWYASLAGNAIARIDPFAG 220 (353)
T ss_pred ceEECCCCcEEEEeccccceEEcccccC
Confidence 7888888887777666666666665554
No 472
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=85.93 E-value=18 Score=29.86 Aligned_cols=258 Identities=10% Similarity=0.016 Sum_probs=126.2
Q ss_pred CCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCC----CcchheeeccCC-CCCCCCCCceeeEeeeecccccc---
Q 019405 48 PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN----GDLRVAISNAGD-SGAQPEDDGIVGLHLFKRQREES--- 119 (341)
Q Consensus 48 ~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--- 119 (341)
|..+...-.|....+|.+.+-++...-+...+||... +.. ..+...-+ ...+......+.+.+.....=..
T Consensus 17 ~tDp~L~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~-~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~ 95 (336)
T TIGR03118 17 IVDPGLRNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQ-DPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGE 95 (336)
T ss_pred ccCccccccceeEecCCCCEEEecCCcceEEeecCCcccccCCc-cceEEEecCCCCCCCCCCccEEEEeCCCceEEcCC
Confidence 3334333344444555555777777788999999861 111 11111101 00111123344444432211000
Q ss_pred -ccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCce-EEEEecC--CCCEEEE-eeCCCeEEEEECCCC
Q 019405 120 -SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTI-AFSKVDI--SEKFSLF-GGKGVEVNVWDLDKC 194 (341)
Q Consensus 120 -~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i-~~~~~~~--~~~~l~~-~~~d~~v~i~d~~~~ 194 (341)
......++.++++|+|.-|........ ....+.+++....+.| ..+++.. .+.+|+. =-..++|.+||-.-.
T Consensus 96 g~~~~a~Fif~tEdGTisaW~p~v~~t~---~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~ 172 (336)
T TIGR03118 96 GITGPSRFLFVTEDGTLSGWAPALGTTR---MTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFR 172 (336)
T ss_pred CcccceeEEEEeCCceEEeecCcCCccc---ccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccc
Confidence 012236889999999999985433310 0012233343322333 3445442 3455544 345788888885422
Q ss_pred cee--eecCCCCC----CccCccCCeeeeEEEEE-ecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEe--cCCCeEEEE
Q 019405 195 EKI--WTAKPPPK----NSLGIFTPTWFTSAAFL-SIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF--RETPIKAVA 265 (341)
Q Consensus 195 ~~~--~~~~~~~~----~~~~~~~~~~v~~~~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~~~~v~~~~ 265 (341)
+.. ..+..+.. .++.+..-+.-.-+.|. ..++...=+.+..-|.|-+||... + .++.+.. .-..-+.|+
T Consensus 173 ~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G-~-l~~r~as~g~LNaPWG~a 250 (336)
T TIGR03118 173 PPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG-Q-LLRRVASSGRLNAPWGLA 250 (336)
T ss_pred cccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC-c-EEEEeccCCcccCCceee
Confidence 211 11111100 01111000111111221 022333333444567899999885 3 3555532 122345677
Q ss_pred EcC------CCceEEEEeCCCCEEEEECCCCeEEeEEecccc-----CceeEEEecC
Q 019405 266 EEP------DSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCS-----GSIRSIARHP 311 (341)
Q Consensus 266 ~~~------~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~-----~~i~~~~~~~ 311 (341)
..| .+.+|+--..||+|..||..+++.+..+..... ..++.|.|..
T Consensus 251 ~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 251 IAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred eChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 655 456666666799999999999998887765422 2467788865
No 473
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=85.92 E-value=17 Score=29.52 Aligned_cols=148 Identities=13% Similarity=0.028 Sum_probs=85.0
Q ss_pred CceEEEEecCCCCEEEEeeCC---------CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEE
Q 019405 163 GTIAFSKVDISEKFSLFGGKG---------VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG 233 (341)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~~d---------~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 233 (341)
.......|++.|++-+++... +.|++|+.-.+ ...+.++. .|+|..-++.
T Consensus 148 ~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG-------------------~gpyGi~a--tpdGsvwyas 206 (353)
T COG4257 148 ANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQG-------------------GGPYGICA--TPDGSVWYAS 206 (353)
T ss_pred CcccceeeCCCccEEEeeccccceecCcccCceeeeccCCC-------------------CCCcceEE--CCCCcEEEEe
Confidence 346677888888888876421 22333333211 12445566 7899888887
Q ss_pred eCCCeEEEEEcCCCCceeEEE-EecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeE-EeEEeccccCceeEEEecC
Q 019405 234 TNDHQVRLYDTSAQRRPVMSF-DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL-LGCFIGKCSGSIRSIARHP 311 (341)
Q Consensus 234 ~~d~~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~~~ 311 (341)
-.++.|-..|...+...+... .........+--+|.|+.-++....+.+..||..+... ...+.+. ...-.++....
T Consensus 207 lagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs-~arpys~rVD~ 285 (353)
T COG4257 207 LAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGS-KARPYSMRVDR 285 (353)
T ss_pred ccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCC-CCCcceeeecc
Confidence 778888888877653212111 11122345565678888888888888899988775442 2233333 33445555555
Q ss_pred CCCEEEEEeCCCcEEEEEcCC
Q 019405 312 TLPIIASCGLDSYLRFWDIKT 332 (341)
Q Consensus 312 ~~~~l~s~~~dg~v~iwd~~~ 332 (341)
.++.-++--..|.|.-||.++
T Consensus 286 ~grVW~sea~agai~rfdpet 306 (353)
T COG4257 286 HGRVWLSEADAGAIGRFDPET 306 (353)
T ss_pred CCcEEeeccccCceeecCccc
Confidence 555444433445555555544
No 474
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=85.82 E-value=26 Score=31.51 Aligned_cols=111 Identities=16% Similarity=0.153 Sum_probs=59.5
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCC---eEEEEEcCCCceEEEEeC-------------CCCEEEEEC
Q 019405 224 IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETP---IKAVAEEPDSFNIYIGNG-------------SGDLASVDI 287 (341)
Q Consensus 224 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~~g~~-------------dg~i~iwd~ 287 (341)
-++|.+++... ..++.+|+.. +. +..+...... -..+..-|+|.+|+.+.. ...|..+|
T Consensus 156 l~nG~ll~~~~--~~~~e~D~~G-~v-~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd- 230 (477)
T PF05935_consen 156 LPNGNLLIGSG--NRLYEIDLLG-KV-IWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD- 230 (477)
T ss_dssp -TTS-EEEEEB--TEEEEE-TT---E-EEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--
T ss_pred cCCCCEEEecC--CceEEEcCCC-CE-EEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-
Confidence 57787776554 7888888874 32 4444332211 245777899988887772 12366667
Q ss_pred CCCeEEeEEecc------cc--------------------CceeEEEecC-CCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 288 RTGKLLGCFIGK------CS--------------------GSIRSIARHP-TLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 288 ~~~~~~~~~~~~------~~--------------------~~i~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
.+|+.+..+... .. --++++.+.+ ++.+|+++-.-..|...|.++++....+
T Consensus 231 ~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wil 309 (477)
T PF05935_consen 231 PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWIL 309 (477)
T ss_dssp TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEE
T ss_pred CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEe
Confidence 777766654311 00 1378899999 5555666555558999998888877654
No 475
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=85.36 E-value=26 Score=31.11 Aligned_cols=105 Identities=11% Similarity=0.079 Sum_probs=58.0
Q ss_pred eeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCc-eeEEE----E-ecCCCeEEEEEcCCC------ceEEEEe------
Q 019405 216 FTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR-PVMSF----D-FRETPIKAVAEEPDS------FNIYIGN------ 277 (341)
Q Consensus 216 v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~----~-~~~~~v~~~~~~~~~------~~l~~g~------ 277 (341)
...++| .|++++|++--..|.|++++..+... .+..+ . ..+.....|+++|+- .+|++..
T Consensus 32 Pw~maf--lPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~ 109 (454)
T TIGR03606 32 PWALLW--GPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGD 109 (454)
T ss_pred ceEEEE--cCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCC
Confidence 567889 78887776654469999998654321 12111 1 134668899999873 3455543
Q ss_pred ----CCCCEEEEECCCC-------eEE-eEEeccccCceeEEEecCCCCEEEEEeCC
Q 019405 278 ----GSGDLASVDIRTG-------KLL-GCFIGKCSGSIRSIARHPTLPIIASCGLD 322 (341)
Q Consensus 278 ----~dg~i~iwd~~~~-------~~~-~~~~~~~~~~i~~~~~~~~~~~l~s~~~d 322 (341)
....|.-|.+... +.+ ..+.......-..|+|.|||.++++.+..
T Consensus 110 ~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 110 KELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 1223444544311 111 11211101124468899999977766554
No 476
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=84.85 E-value=3 Score=22.06 Aligned_cols=27 Identities=37% Similarity=0.626 Sum_probs=23.2
Q ss_pred eEEEEeCCCCEEEEECCCCeEEeEEec
Q 019405 272 NIYIGNGSGDLASVDIRTGKLLGCFIG 298 (341)
Q Consensus 272 ~l~~g~~dg~i~iwd~~~~~~~~~~~~ 298 (341)
.+++++.+|.|+-.|.++|+.+..++.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 456679999999999999999988875
No 477
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=84.35 E-value=20 Score=28.81 Aligned_cols=136 Identities=13% Similarity=0.158 Sum_probs=71.6
Q ss_pred eEEEEEeecCCceEEEEecCCCCEEEEeeCC---CeEEEEECCC---CceeeecCCCCCCccCccCCeeeeEEEEEecCC
Q 019405 153 TVKSWNVCASGTIAFSKVDISEKFSLFGGKG---VEVNVWDLDK---CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD 226 (341)
Q Consensus 153 ~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~v~i~d~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 226 (341)
+++-..+.+...+..-.+-+||+++.+|+.. ..+++++..+ .....+... .+....|-..+.. -+|
T Consensus 57 ~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~------~m~~~RWYpT~~~--L~D 128 (243)
T PF07250_consen 57 TFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPN------DMQSGRWYPTATT--LPD 128 (243)
T ss_pred cEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcc------cccCCCccccceE--CCC
Confidence 3443333333333333566899999998763 3477777543 111111110 0122344444444 478
Q ss_pred CCEEEEEeCCCe-EEEEEcCCC-CceeE--EEEe-----cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEe
Q 019405 227 HRKFVAGTNDHQ-VRLYDTSAQ-RRPVM--SFDF-----RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI 297 (341)
Q Consensus 227 ~~~l~~~~~d~~-i~iwd~~~~-~~~~~--~~~~-----~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~ 297 (341)
|+.|+.|+.+.. ..+|.-... ..... .+.. ...--..+-..|+|++++.+..+ -.|||..+.+.++.+.
T Consensus 129 G~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~~lP 206 (243)
T PF07250_consen 129 GRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVRTLP 206 (243)
T ss_pred CCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEeeCC
Confidence 999998887643 344443221 11111 1110 11122346668999999888765 4566888887766665
Q ss_pred c
Q 019405 298 G 298 (341)
Q Consensus 298 ~ 298 (341)
.
T Consensus 207 ~ 207 (243)
T PF07250_consen 207 D 207 (243)
T ss_pred C
Confidence 4
No 478
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=84.23 E-value=23 Score=29.53 Aligned_cols=149 Identities=17% Similarity=0.178 Sum_probs=76.8
Q ss_pred CCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEE
Q 019405 162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL 241 (341)
Q Consensus 162 ~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~i 241 (341)
.+.+..+.-++++.+++++.......-||-... .+...... ....|..+.| .|++.+.+.+ ..|.|+.
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~--~w~~~~r~-------~~~riq~~gf--~~~~~lw~~~-~Gg~~~~ 211 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQT--TWQPHNRN-------SSRRIQSMGF--SPDGNLWMLA-RGGQIQF 211 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-S--S-EEEE---------SSS-EEEEEE---TTS-EEEEE-TTTEEEE
T ss_pred cceeEeEEECCCCcEEEEECcccEEEEecCCCc--cceEEccC-------ccceehhcee--cCCCCEEEEe-CCcEEEE
Confidence 356778888899999998877776777875421 11111100 1255999999 7887776654 8888888
Q ss_pred EEcCCCCceeEEEEe-------cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEec--cccCceeEEEecCC
Q 019405 242 YDTSAQRRPVMSFDF-------RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG--KCSGSIRSIARHPT 312 (341)
Q Consensus 242 wd~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~--~~~~~i~~~~~~~~ 312 (341)
=+.... ...+.. ....+..++|.+++...++|+. |.+ +.....|+-=.+.+. .....++.+.|.+.
T Consensus 212 s~~~~~---~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~ 286 (302)
T PF14870_consen 212 SDDPDD---GETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNP 286 (302)
T ss_dssp EE-TTE---EEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEET
T ss_pred ccCCCC---ccccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEEEEcCC
Confidence 762221 222221 2224788999988877776654 443 334555544333322 11456889999766
Q ss_pred CCEEEEEeCCCcEEEE
Q 019405 313 LPIIASCGLDSYLRFW 328 (341)
Q Consensus 313 ~~~l~s~~~dg~v~iw 328 (341)
.+-++. +.+|.|.-|
T Consensus 287 ~~gf~l-G~~G~ll~~ 301 (302)
T PF14870_consen 287 DKGFVL-GQDGVLLRY 301 (302)
T ss_dssp TEEEEE--STTEEEEE
T ss_pred CceEEE-CCCcEEEEe
Confidence 554544 478876554
No 479
>PRK13684 Ycf48-like protein; Provisional
Probab=84.21 E-value=25 Score=29.90 Aligned_cols=107 Identities=9% Similarity=-0.064 Sum_probs=58.4
Q ss_pred eeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEE-ecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeE
Q 019405 214 TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD-FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL 292 (341)
Q Consensus 214 ~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~ 292 (341)
..+..+.+ .+++.+++++ ..|.+..- .+.+...-.... .-...++++.+.++++.+++| ..|.+++=....++.
T Consensus 173 g~~~~i~~--~~~g~~v~~g-~~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 173 GVVRNLRR--SPDGKYVAVS-SRGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES 247 (334)
T ss_pred ceEEEEEE--CCCCeEEEEe-CCceEEEE-cCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc
Confidence 45788888 6777666555 45554432 112211122222 234578899999999877765 456654323333332
Q ss_pred EeEEecc---ccCceeEEEecCCCCEEEEEeCCCcEE
Q 019405 293 LGCFIGK---CSGSIRSIARHPTLPIIASCGLDSYLR 326 (341)
Q Consensus 293 ~~~~~~~---~~~~i~~~~~~~~~~~l~s~~~dg~v~ 326 (341)
-.....+ ....+.++.+.|++..++.+ .+|.+.
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~ 283 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL 283 (334)
T ss_pred cccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE
Confidence 2211111 12457889999987765544 566544
No 480
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=83.97 E-value=18 Score=28.09 Aligned_cols=151 Identities=16% Similarity=0.144 Sum_probs=81.4
Q ss_pred CCCEEEEeeC--CCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCce
Q 019405 173 SEKFSLFGGK--GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP 250 (341)
Q Consensus 173 ~~~~l~~~~~--d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 250 (341)
++.++.+.+. ...|+.||+++++.+..-.-.....+..+ ++. ..+ .+....-.+|.-..+|.++.+.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEG----it~-----~gd-~~y~LTw~egvaf~~d~~t~~~- 123 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEG----ITK-----LGD-YFYQLTWKEGVAFKYDADTLEE- 123 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccc----eee-----ccc-eEEEEEeccceeEEEChHHhhh-
Confidence 3455555544 34699999999988876554422222111 111 011 1222234678888899887654
Q ss_pred eEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEe----ccccCceeEEEecCCCCEEEEEeCCCcEE
Q 019405 251 VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI----GKCSGSIRSIARHPTLPIIASCGLDSYLR 326 (341)
Q Consensus 251 ~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~l~s~~~dg~v~ 326 (341)
+..+... +.=+.++. ++..|+.++....++.-|.++.....++. +..-..++.+.|- +|...|-.=.+..|.
T Consensus 124 lg~~~y~-GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~ 199 (262)
T COG3823 124 LGRFSYE-GEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIA 199 (262)
T ss_pred hcccccC-Ccceeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceE
Confidence 4444322 33345543 55567777767778888877655444332 2111233444443 555555444555566
Q ss_pred EEEcCCCceeee
Q 019405 327 FWDIKTRQLLSA 338 (341)
Q Consensus 327 iwd~~~~~~~~~ 338 (341)
.-|.++|+.+..
T Consensus 200 rI~p~sGrV~~w 211 (262)
T COG3823 200 RIDPDSGRVVAW 211 (262)
T ss_pred EEcCCCCcEEEE
Confidence 666666666543
No 481
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=83.38 E-value=13 Score=28.07 Aligned_cols=31 Identities=16% Similarity=0.154 Sum_probs=25.9
Q ss_pred CceeEEEecCCC------CEEEEEeCCCcEEEEEcCC
Q 019405 302 GSIRSIARHPTL------PIIASCGLDSYLRFWDIKT 332 (341)
Q Consensus 302 ~~i~~~~~~~~~------~~l~s~~~dg~v~iwd~~~ 332 (341)
..|.+++|||.| -+|+....++.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 478999999954 2789999999999998763
No 482
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=83.16 E-value=0.15 Score=44.04 Aligned_cols=231 Identities=10% Similarity=-0.004 Sum_probs=118.7
Q ss_pred eEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccc
Q 019405 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS 146 (341)
Q Consensus 67 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~ 146 (341)
-++.++.+..+..||-.. +....... ......++|-.. ++..++.+...+.+.+|+++.....
T Consensus 48 nlavaca~tiv~~YD~ag-q~~le~n~---------tg~aldm~wDke-------gdvlavlAek~~piylwd~n~eytq 110 (615)
T KOG2247|consen 48 NLAVACANTIVIYYDKAG-QVILELNP---------TGKALDMAWDKE-------GDVLAVLAEKTGPIYLWDVNSEYTQ 110 (615)
T ss_pred ceehhhhhhHHHhhhhhc-ceecccCC---------chhHhhhhhccc-------cchhhhhhhcCCCeeechhhhhhHH
Confidence 488888899999998643 33222221 133333444321 2226777778889999998654311
Q ss_pred cccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCC
Q 019405 147 AESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD 226 (341)
Q Consensus 147 ~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 226 (341)
++ .....+... -+.|++....++.+-..|.+.+++..+.+.......+ ..++.++++ .+.
T Consensus 111 ------qL-E~gg~~s~s--ll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh---------~RRgtq~av--~lE 170 (615)
T KOG2247|consen 111 ------QL-ESGGTSSKS--LLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKH---------QRRGTQIAV--TLE 170 (615)
T ss_pred ------HH-hccCcchHH--HHhhccCCccccccccccceEEEeccchhhhhhhccc---------ccceeEEEe--ccc
Confidence 00 000011111 2567777788888888899999998877665544433 255888888 555
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceeEEEEecCC----CeEEE---EEcCCCceEEEEeCCCCEEEE----ECCCCeEEeE
Q 019405 227 HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRET----PIKAV---AEEPDSFNIYIGNGSGDLASV----DIRTGKLLGC 295 (341)
Q Consensus 227 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~----~v~~~---~~~~~~~~l~~g~~dg~i~iw----d~~~~~~~~~ 295 (341)
+ +.+.++.|..+.+-...+.. ......... ....+ .|..-|..+.+.= .|.+.+. +-.++..--.
T Consensus 171 d-~vil~dcd~~L~v~~qeget--a~ltevggepdnm~~~y~k~n~w~kage~m~sVv-sgKkhl~yak~nE~D~pval~ 246 (615)
T KOG2247|consen 171 D-YVILCDCDNTLSVTTQEGET--ASLTEVGGEPDNMDFFYGKVNGWGKAGETMVSVV-SGKKHLMYAKYNELDEPVALQ 246 (615)
T ss_pred c-eeeecCcHHHHHHhhhccce--eeeeeccCccchhhhheeeeeccccccceeeeee-ecHHHHHHHhhcCCCCccceE
Confidence 5 55666666555443322211 111111100 00011 1222232222211 1111111 1111111115
Q ss_pred EeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeeec
Q 019405 296 FIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVC 340 (341)
Q Consensus 296 ~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 340 (341)
++.. .+.+.+..|--||..+ .+-.-|.|..-.+.+++..+++|
T Consensus 247 fq~~-~gni~cyrwylDg~i~-igf~ag~iV~iS~h~aeLgaeff 289 (615)
T KOG2247|consen 247 FQEK-YGNIHCYRWYLDGYIL-IGFDAGYIVSISAHNAELGAEFF 289 (615)
T ss_pred eeec-CCceeEEEEecccccc-ccccceeEEEEeccchHHHHHHH
Confidence 5554 6788899998887544 34444555555577777666654
No 483
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=82.92 E-value=26 Score=29.08 Aligned_cols=77 Identities=10% Similarity=0.004 Sum_probs=45.7
Q ss_pred eEEEEecCCCCEEEEeeCCCeEEEEECC------CCc-eeeecCCCCCCccCccCCeeeeEEEEEe------cCC----C
Q 019405 165 IAFSKVDISEKFSLFGGKGVEVNVWDLD------KCE-KIWTAKPPPKNSLGIFTPTWFTSAAFLS------IDD----H 227 (341)
Q Consensus 165 i~~~~~~~~~~~l~~~~~d~~v~i~d~~------~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~----~ 227 (341)
-+.++++|.+.+-++....+...+||.. ..+ .+-.+...... ..+...+.+.|.. ... .
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~----~~~~~PTGiVfN~~~~F~vt~~g~~~~ 100 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPL----AAEGTPTGQVFNGSDTFVVSGEGITGP 100 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCC----CCCCCccEEEEeCCCceEEcCCCcccc
Confidence 3567889988888888788899999986 122 22222221110 0113355666621 111 1
Q ss_pred CEEEEEeCCCeEEEEEcC
Q 019405 228 RKFVAGTNDHQVRLYDTS 245 (341)
Q Consensus 228 ~~l~~~~~d~~i~iwd~~ 245 (341)
..++.+++||+|.-|...
T Consensus 101 a~Fif~tEdGTisaW~p~ 118 (336)
T TIGR03118 101 SRFLFVTEDGTLSGWAPA 118 (336)
T ss_pred eeEEEEeCCceEEeecCc
Confidence 236778899999999853
No 484
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.76 E-value=35 Score=30.58 Aligned_cols=83 Identities=13% Similarity=0.008 Sum_probs=47.7
Q ss_pred ceEEEEecCCCCEEEEeeCCCeEEEEEC---------CCCceee---ecCCCCCCccCccCCeeeeEEEEEecC-CCCEE
Q 019405 164 TIAFSKVDISEKFSLFGGKGVEVNVWDL---------DKCEKIW---TAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKF 230 (341)
Q Consensus 164 ~i~~~~~~~~~~~l~~~~~d~~v~i~d~---------~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l 230 (341)
.|..+..++.|..++-.|.+|.+.++=. +.++..- .+.... ..+.....-.+..++|+|+. ....|
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~-~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAE-RFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccc-eeeccCCceeeeeccccCCccCCceE
Confidence 4667788999999999899986655431 1222211 111100 00000011236678895433 13566
Q ss_pred EEEeCCCeEEEEEcCCC
Q 019405 231 VAGTNDHQVRLYDTSAQ 247 (341)
Q Consensus 231 ~~~~~d~~i~iwd~~~~ 247 (341)
..-+.|..||+||+...
T Consensus 184 ~iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEP 200 (741)
T ss_pred EEEecCcEEEEEecCCc
Confidence 67778999999998764
No 485
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=82.56 E-value=27 Score=28.98 Aligned_cols=181 Identities=11% Similarity=0.055 Sum_probs=0.0
Q ss_pred eEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccc----cccccccceeEEEcccceeEEEEeeecccccccCC
Q 019405 76 LTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQR----EESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSC 151 (341)
Q Consensus 76 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~ 151 (341)
+|.+||+.+++.++++........ ....+..+..-.... .- ..++=...+.+.|+|+.
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~--~~s~lndl~VD~~~~~~~~~~------aYItD~~~~glIV~dl~---------- 96 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAP--PDSFLNDLVVDVRDGNCDDGF------AYITDSGGPGLIVYDLA---------- 96 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS---TCGGEEEEEEECTTTTS-SEE------EEEEETTTCEEEEEETT----------
T ss_pred EEEEEECCCCcEEEEEECChHHcc--cccccceEEEEccCCCCcceE------EEEeCCCcCcEEEEEcc----------
Q ss_pred ceEEEEEeecC---------------------CceEEEEecC---CCCEEEEeeCCCeEEEEECCCCceeeecCCCCC--
Q 019405 152 STVKSWNVCAS---------------------GTIAFSKVDI---SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPK-- 205 (341)
Q Consensus 152 ~~v~~~~~~~~---------------------~~i~~~~~~~---~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~-- 205 (341)
.-+.|.+.+. ..+..++.+| +++.|+..... .-++|.+.+......-.....
T Consensus 97 -~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~ls-s~~ly~v~T~~L~~~~~~~~~~~ 174 (287)
T PF03022_consen 97 -TGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLS-SRKLYRVPTSVLRDPSLSDAQAL 174 (287)
T ss_dssp -TTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-H
T ss_pred -CCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCC-CCcEEEEEHHHhhCccccccccc
Q ss_pred --CccCccCCe-eeeEEEEEecCCCCEEEEEeCCCeEEEEEcCC----CCceeEEEEec-CCCeEEEEEcC--CCceEEE
Q 019405 206 --NSLGIFTPT-WFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA----QRRPVMSFDFR-ETPIKAVAEEP--DSFNIYI 275 (341)
Q Consensus 206 --~~~~~~~~~-~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~----~~~~~~~~~~~-~~~v~~~~~~~--~~~~l~~ 275 (341)
....++... ....+++ +++|.++++--..+.|..|+..+ ....+...... -.....+.+.+ +|.+.+.
T Consensus 175 ~~~v~~lG~k~~~s~g~~~--D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~ 252 (287)
T PF03022_consen 175 ASQVQDLGDKGSQSDGMAI--DPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVL 252 (287)
T ss_dssp HHT-EEEEE---SECEEEE--ETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEE
T ss_pred cccceeccccCCCCceEEE--CCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEE
Q ss_pred EeC
Q 019405 276 GNG 278 (341)
Q Consensus 276 g~~ 278 (341)
...
T Consensus 253 snr 255 (287)
T PF03022_consen 253 SNR 255 (287)
T ss_dssp E-S
T ss_pred ECc
No 486
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=81.87 E-value=30 Score=29.14 Aligned_cols=65 Identities=18% Similarity=0.240 Sum_probs=34.6
Q ss_pred CCCEEEEEeC-----CCeEEEEEcCCCCceeEEEEe--cCCCeEEEEEcCCCceEEEEeCCC----CEEEEECCCCeE
Q 019405 226 DHRKFVAGTN-----DHQVRLYDTSAQRRPVMSFDF--RETPIKAVAEEPDSFNIYIGNGSG----DLASVDIRTGKL 292 (341)
Q Consensus 226 ~~~~l~~~~~-----d~~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~g~~dg----~i~iwd~~~~~~ 292 (341)
++.+.+.|+. ...+..||+.+.+ -..+.. ........+..-++++.+.|+.++ .+..||+.+.+.
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQE--WFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCC--eeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 5666666664 2357888887643 111211 111111222233566777777654 356889887654
No 487
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=81.30 E-value=31 Score=28.83 Aligned_cols=76 Identities=14% Similarity=0.195 Sum_probs=52.7
Q ss_pred ceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEE
Q 019405 164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD 243 (341)
Q Consensus 164 ~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd 243 (341)
.+.++...++|.+|++.-.-..|.+.|-++++.++.+.+.....+.+ .-...++ ..+-+++-.+..++.|.+||
T Consensus 145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~----~~~~f~~--QHdar~~~~~~~~~~IslFD 218 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTL----PATNFSW--QHDARFLNESNDDGTISLFD 218 (299)
T ss_pred EeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccc----cCCcEee--ccCCEEeccCCCCCEEEEEc
Confidence 36777888899999999888899999999999999997763333322 0111223 33444444556788899998
Q ss_pred cC
Q 019405 244 TS 245 (341)
Q Consensus 244 ~~ 245 (341)
-.
T Consensus 219 N~ 220 (299)
T PF14269_consen 219 NA 220 (299)
T ss_pred CC
Confidence 63
No 488
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=81.24 E-value=58 Score=32.01 Aligned_cols=148 Identities=18% Similarity=0.078 Sum_probs=0.0
Q ss_pred eEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeC-----------CCeEEEEEcCCCCceeEE
Q 019405 185 EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-----------DHQVRLYDTSAQRRPVMS 253 (341)
Q Consensus 185 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-----------d~~i~iwd~~~~~~~~~~ 253 (341)
.|+++|..+++.+..+........-. +..+.|..++...+++++.. +|.++.|++-.....+.-
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~-----v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lel 928 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFS-----VCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLEL 928 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhh-----eeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeee
Q ss_pred EEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccc-cCceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405 254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC-SGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (341)
Q Consensus 254 ~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 332 (341)
+...+-+-.-.+..|-..++++|-.+ .+++||+...++++...... ...|..+.+ .+..++.|...-.|.++..+.
T Consensus 929 lh~T~~~~~v~Ai~~f~~~~LagvG~-~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~ 1005 (1205)
T KOG1898|consen 929 LHKTEIPGPVGAICPFQGRVLAGVGR-FLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRR 1005 (1205)
T ss_pred eeccCCCccceEEeccCCEEEEeccc-EEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEec
Q ss_pred Cceeeeec
Q 019405 333 RQLLSAVC 340 (341)
Q Consensus 333 ~~~~~~~~ 340 (341)
....--.|
T Consensus 1006 ~~n~l~~f 1013 (1205)
T KOG1898|consen 1006 EDNQLIVF 1013 (1205)
T ss_pred CCCeEEEE
No 489
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=80.97 E-value=56 Score=31.69 Aligned_cols=252 Identities=13% Similarity=0.090 Sum_probs=119.5
Q ss_pred CceEEEEccCCeEEEeeCCCCcchheeeccCC-CCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeec
Q 019405 65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGD-SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT 143 (341)
Q Consensus 65 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~ 143 (341)
.+.+++-+.+|.|+--+..+-.... ...... ......++.+......+... .++..+..|.+.......-
T Consensus 496 e~~~vllS~~GyIKri~~~~~~~~~-~~~~g~s~~klKe~D~l~~~~~~~t~d--------~LllfTs~Grv~~l~~~~I 566 (800)
T TIGR01063 496 ENVVVTLSHNGYVKRVPVSAYRLQK-RGGKGVSGADMKDDDFIEQLLVASTHD--------YLLFFTNRGKVYWLKVYQI 566 (800)
T ss_pred ceEEEEEcCCCEEEecchhhhhhhc-ccCcCccccccCCCCeeEEEEEecCCC--------eEEEEeCCCcEEEEEhhhC
Confidence 3468888899999988765422100 000000 00001234555444444444 6677777777766554332
Q ss_pred ccccccCCce-E-EEEEeecCCc-eEEEEec--CCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeE
Q 019405 144 KVSAESSCST-V-KSWNVCASGT-IAFSKVD--ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTS 218 (341)
Q Consensus 144 ~~~~~~~~~~-v-~~~~~~~~~~-i~~~~~~--~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 218 (341)
+.......|. + .+.....+.. +.++... .+...++..+.+|.++-.++..-..... . ....+.+.....+..
T Consensus 567 P~~~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~r-~--G~~aiklke~D~lv~ 643 (800)
T TIGR01063 567 PEASRTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIRS-N--GIIAIKLDDGDELIS 643 (800)
T ss_pred cCCCcCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhcc-C--CcccccCCCCCEEEE
Confidence 2211111111 1 1123333333 3344432 3456788899999999887754322111 0 000011111233444
Q ss_pred EEEEecCCCCEEEEEeCCCeEEEEEcCCC---C---ceeEEEEe-cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCC--
Q 019405 219 AAFLSIDDHRKFVAGTNDHQVRLYDTSAQ---R---RPVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT-- 289 (341)
Q Consensus 219 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~---~~~~~~~~-~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~-- 289 (341)
+.. ......++..+..|.+..+....- . ..+..+.. ....|.++..-.+...++..+..|.++...+..
T Consensus 644 v~~--~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~ 721 (800)
T TIGR01063 644 VRL--TSGDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVRGIKLKNEDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYR 721 (800)
T ss_pred EEE--eCCCCEEEEEECCCcEEEEEhhhcCCcCCCCCCeecccCCCCCEEEEEEEeccccEEEEEecCCcEEEEEHHHcc
Confidence 433 233445666667787766654321 0 01111111 223354444334455677888888888776431
Q ss_pred -----CeEEe--EEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcC
Q 019405 290 -----GKLLG--CFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331 (341)
Q Consensus 290 -----~~~~~--~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~ 331 (341)
++-+. .+... .+.+..+....+...++..+.+|.+..++..
T Consensus 722 ~~~R~~kGv~~ikl~~~-~d~lv~~~~v~~~~~v~liT~~G~~lrf~~~ 769 (800)
T TIGR01063 722 ETSRGGKGVKSIKITDR-NGQVVGAIAVDDDDELMLITSAGKLIRTSVQ 769 (800)
T ss_pred ccCCCCcceEEEEccCC-CCeEEEEEEecCCCeEEEEecCCeEEEeeHh
Confidence 22222 22222 2344444444444456666777777666654
No 490
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=80.49 E-value=25 Score=27.41 Aligned_cols=110 Identities=15% Similarity=0.022 Sum_probs=57.7
Q ss_pred eEEEEccCCeEEEeeCCCC--cchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccc------eeEEE
Q 019405 67 LLAVARKNGLTDILNPLNG--DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG------KASMR 138 (341)
Q Consensus 67 ~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g------~~~i~ 138 (341)
.|..+...+.|.+|++.+. +.+..+... +.+..+.+...++ ++++--++. .+++|
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv---------~~V~~l~y~~~GD--------YlvTlE~k~~~~~~~fvR~Y 92 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEECPLLCTFSTV---------GRVLQLVYSEAGD--------YLVTLEEKNKRSPVDFVRAY 92 (215)
T ss_pred eEEEEcCCCEEEEEEcccCCCceeEEEcch---------hheeEEEeccccc--------eEEEEEeecCCccceEEEEE
Confidence 3545466788999999833 334444432 6666666666555 666553332 22333
Q ss_pred E-eeeccc-------------cc----ccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCC
Q 019405 139 S-IEVTKV-------------SA----ESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC 194 (341)
Q Consensus 139 ~-~~~~~~-------------~~----~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~ 194 (341)
- .+.... .+ ......+.+.++.-.....+++..|-..-|+.|+. +.+.+|.+...
T Consensus 93 ~NWr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~~ 165 (215)
T PF14761_consen 93 FNWRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-NKLVLFTLKYQ 165 (215)
T ss_pred EEhhhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC-CEEEEEEEEEE
Confidence 1 111100 00 00111344444444556778888775444555544 48999988643
No 491
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=80.16 E-value=59 Score=31.43 Aligned_cols=168 Identities=13% Similarity=0.122 Sum_probs=95.7
Q ss_pred EEEEEeecCCceEEEEec---C----CCCEEEEeeCCCeEEEEECCCCce---------------eeecCCCCCCccCcc
Q 019405 154 VKSWNVCASGTIAFSKVD---I----SEKFSLFGGKGVEVNVWDLDKCEK---------------IWTAKPPPKNSLGIF 211 (341)
Q Consensus 154 v~~~~~~~~~~i~~~~~~---~----~~~~l~~~~~d~~v~i~d~~~~~~---------------~~~~~~~~~~~~~~~ 211 (341)
-..|.+..+.+|..|+|. . ...+|++- ....+.|+...-.+. +..+.....
T Consensus 71 ~~~w~i~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~t------ 143 (765)
T PF10214_consen 71 SGAWSIDDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDT------ 143 (765)
T ss_pred cceeEcCCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhc------
Confidence 345776678899999997 2 22455544 444677777322111 111111110
Q ss_pred CCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCC----ceeEEEEecC----------CCeEEEEEcCCCceEEEEe
Q 019405 212 TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR----RPVMSFDFRE----------TPIKAVAEEPDSFNIYIGN 277 (341)
Q Consensus 212 ~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~----~~~~~~~~~~----------~~v~~~~~~~~~~~l~~g~ 277 (341)
.......++|+| .+...||+....|.-.|||+.... ..+.....+. ..-..+.|.++-..|++++
T Consensus 144 gg~~~aDv~FnP-~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~ 222 (765)
T PF10214_consen 144 GGFPHADVAFNP-WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN 222 (765)
T ss_pred CCCccceEEecc-CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc
Confidence 123466788953 345689999999999999992211 1111111111 2234688988877777765
Q ss_pred CCCCEEEEECCCCeEEe-EEeccccCceeEEEecCCC--CEEEEEeCCCcEEEEEcCC
Q 019405 278 GSGDLASVDIRTGKLLG-CFIGKCSGSIRSIARHPTL--PIIASCGLDSYLRFWDIKT 332 (341)
Q Consensus 278 ~dg~i~iwd~~~~~~~~-~~~~~~~~~i~~~~~~~~~--~~l~s~~~dg~v~iwd~~~ 332 (341)
. ..+.++|+++..... .........|..+.-+|.. ..++-. ...|...++.+
T Consensus 223 r-~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~ 277 (765)
T PF10214_consen 223 R-SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKS 277 (765)
T ss_pred C-CceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccC
Confidence 4 578999998775532 2222125678888888873 333322 24566667665
No 492
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=78.20 E-value=44 Score=28.88 Aligned_cols=215 Identities=15% Similarity=0.148 Sum_probs=110.0
Q ss_pred eeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEE--EeccCCCCCceEEEEc-cC---CeEEEeeCC--CCcc
Q 019405 16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLA--ASIDDSQNDPLLAVAR-KN---GLTDILNPL--NGDL 87 (341)
Q Consensus 16 ~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~s~~~~~~~~~l~~~~-~d---g~i~iw~~~--~~~~ 87 (341)
.++..++++-+.++++... .++.+....-...-+. |...+.+. + |++++ .+ .+|++|.+. ++.
T Consensus 70 lIigTdK~~GL~VYdL~Gk------~lq~~~~Gr~NNVDvrygf~l~g~~v-D-lavas~R~~g~n~l~~f~id~~~g~- 140 (381)
T PF02333_consen 70 LIIGTDKKGGLYVYDLDGK------ELQSLPVGRPNNVDVRYGFPLNGKTV-D-LAVASDRSDGRNSLRLFRIDPDTGE- 140 (381)
T ss_dssp EEEEEETTTEEEEEETTS-------EEEEE-SS-EEEEEEEEEEEETTEEE-E-EEEEEE-CCCT-EEEEEEEETTTTE-
T ss_pred eEEEEeCCCCEEEEcCCCc------EEEeecCCCcceeeeecceecCCceE-E-EEEEecCcCCCCeEEEEEecCCCCc-
Confidence 4566777787888877754 4444432111111222 22222211 1 44443 32 579999775 232
Q ss_pred hheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEE
Q 019405 88 RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAF 167 (341)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~ 167 (341)
+..+.... .........+..++.+..... ..-+.+...++|.+..|.+....... -....+|.|.. ...+..
T Consensus 141 L~~v~~~~-~p~~~~~~e~yGlcly~~~~~----g~~ya~v~~k~G~~~Qy~L~~~~~g~-v~~~lVR~f~~--~sQ~EG 212 (381)
T PF02333_consen 141 LTDVTDPA-APIATDLSEPYGLCLYRSPST----GALYAFVNGKDGRVEQYELTDDGDGK-VSATLVREFKV--GSQPEG 212 (381)
T ss_dssp EEE-CBTT-C-EE-SSSSEEEEEEEE-TTT------EEEEEEETTSEEEEEEEEE-TTSS-EEEEEEEEEE---SS-EEE
T ss_pred ceEcCCCC-cccccccccceeeEEeecCCC----CcEEEEEecCCceEEEEEEEeCCCCc-EeeEEEEEecC--CCcceE
Confidence 22222100 011122345677887754321 12267778888999999886433210 01235666665 457888
Q ss_pred EEecCCCCEEEEeeCCCeEEEEECCC-----CceeeecCCCCCCccCccCCeeeeEEEEEecCCC--CEEEEEeCCCeEE
Q 019405 168 SKVDISEKFSLFGGKGVEVNVWDLDK-----CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH--RKFVAGTNDHQVR 240 (341)
Q Consensus 168 ~~~~~~~~~l~~~~~d~~v~i~d~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~l~~~~~d~~i~ 240 (341)
+..+.....|+.+-.+.-|.-|+.+- ++.+....... + ..-+..++.....++ -+|++.-.+++..
T Consensus 213 CVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~---l----~aDvEGlaly~~~~g~gYLivSsQG~~sf~ 285 (381)
T PF02333_consen 213 CVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDG---L----VADVEGLALYYGSDGKGYLIVSSQGDNSFA 285 (381)
T ss_dssp EEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSS---B-----S-EEEEEEEE-CCC-EEEEEEEGGGTEEE
T ss_pred EEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccc---c----ccCccceEEEecCCCCeEEEEEcCCCCeEE
Confidence 88988888999999998888888762 22222222211 0 133666666433333 3455555678999
Q ss_pred EEEcCCCCceeEEE
Q 019405 241 LYDTSAQRRPVMSF 254 (341)
Q Consensus 241 iwd~~~~~~~~~~~ 254 (341)
+|+.+.....+..|
T Consensus 286 Vy~r~~~~~~~g~f 299 (381)
T PF02333_consen 286 VYDREGPNAYVGSF 299 (381)
T ss_dssp EEESSTT--EEEEE
T ss_pred EEecCCCCcccceE
Confidence 99988643334444
No 493
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=78.03 E-value=11 Score=35.41 Aligned_cols=140 Identities=14% Similarity=0.062 Sum_probs=82.0
Q ss_pred CEEEEeeCCCeEEEEECCCCce---eeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEE--------EE
Q 019405 175 KFSLFGGKGVEVNVWDLDKCEK---IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL--------YD 243 (341)
Q Consensus 175 ~~l~~~~~d~~v~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~i--------wd 243 (341)
..+..|+.++.+.++.-.++.. ......+. ...+.++.+ . ..-+..|.-||++-. ||
T Consensus 548 PTic~gtq~ssisissss~~s~ke~~~~~~spe--------~~~v~~l~~--s--s~Slgagl~dgt~a~y~rap~gSwd 615 (925)
T KOG3522|consen 548 PTICLGTQTSSISISSSSLDSIKEVTSEPPSPE--------HESVKLLLF--S--SGSLGAGLIDGTLAVYGRAPSGSWD 615 (925)
T ss_pred CcccccCccceeEEeeccCCcccceeccCCCCc--------hhhhhhhhc--c--ccccccCccCCccccccCCCCCCCC
Confidence 3567788889999987652221 11111111 133445554 2 223444455555544 44
Q ss_pred cCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEecc--ccCceeEEEecCCCCEEEEEeC
Q 019405 244 TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK--CSGSIRSIARHPTLPIIASCGL 321 (341)
Q Consensus 244 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~s~~~ 321 (341)
.. |-..+.....++.+.++..| ++.++.+|.|.++...+.........| +...|+++....++-+++.++.
T Consensus 616 ~e----p~~~~~~g~lPvrsla~~ed---~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG 688 (925)
T KOG3522|consen 616 GE----PNISIPTGSLPVRSLAFQED---FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASG 688 (925)
T ss_pred CC----CccccccCCccccchhhhhc---eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCC
Confidence 33 22333334567888887665 456778999999998876655555433 2468999998877767666655
Q ss_pred CCcEEEEEcCCCc
Q 019405 322 DSYLRFWDIKTRQ 334 (341)
Q Consensus 322 dg~v~iwd~~~~~ 334 (341)
| .+++++..+-.
T Consensus 689 ~-~~rlfhtetl~ 700 (925)
T KOG3522|consen 689 D-EERLFHTETLW 700 (925)
T ss_pred C-EEEEecccccC
Confidence 5 45555655533
No 494
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=77.70 E-value=6.6 Score=19.08 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=19.4
Q ss_pred CeEEEEEcCCCceEEEEeCCCCEEEEE
Q 019405 260 PIKAVAEEPDSFNIYIGNGSGDLASVD 286 (341)
Q Consensus 260 ~v~~~~~~~~~~~l~~g~~dg~i~iwd 286 (341)
.|.+++..+. +++++..-+.+|+|.
T Consensus 3 ~i~aia~g~~--~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAGDS--WVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEccCC--EEEEEeCCCeEEecC
Confidence 5677777654 888888889999873
No 495
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=77.60 E-value=41 Score=29.62 Aligned_cols=106 Identities=9% Similarity=0.075 Sum_probs=63.5
Q ss_pred eeEEEcccceeEEEE-eeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCC
Q 019405 125 TLLTCTTKGKASMRS-IEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP 203 (341)
Q Consensus 125 ~l~~~~~~g~~~i~~-~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~ 203 (341)
.+++.+.||.+.-|- +..... ..-..++.++. .+.++..+.-..+.+-+++-+..|++..+.....+.+..-...
T Consensus 282 SLLv~~~dG~vsQWFdvr~~~~---p~l~h~R~f~l-~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~ 357 (733)
T COG4590 282 SLLVVHEDGLVSQWFDVRRDGQ---PHLNHIRNFKL-APAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAY 357 (733)
T ss_pred eEEEEcCCCceeeeeeeecCCC---Ccceeeecccc-CcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhh
Confidence 788889999888774 332221 12224444443 2345555555455566777788888887765443332211111
Q ss_pred CCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCC
Q 019405 204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ 247 (341)
Q Consensus 204 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 247 (341)
..+.-+++ +|++.++++- +.|.|+++.+++.
T Consensus 358 ----------~~~~~~~~--Sp~~~~Ll~e-~~gki~~~~l~Nr 388 (733)
T COG4590 358 ----------QAPQLVAM--SPNQAYLLSE-DQGKIRLAQLENR 388 (733)
T ss_pred ----------cCcceeee--Ccccchheee-cCCceEEEEecCC
Confidence 12455678 8888888874 4678999888764
No 496
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=77.53 E-value=62 Score=31.31 Aligned_cols=105 Identities=14% Similarity=0.145 Sum_probs=58.6
Q ss_pred ccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCC
Q 019405 72 RKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSC 151 (341)
Q Consensus 72 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~ 151 (341)
+.|+++.+|+..++...+.+... ...+..+..+.+..+.-.+.-..++..+..-.+.++-+.... ..
T Consensus 99 T~dnkLiLWnynn~neyq~idd~--------shtIlkVkLvrPkantFvs~i~hlL~vAT~~e~~ilgvs~d~-----~T 165 (1263)
T COG5308 99 TNDNKLILWNYNNSNEYQEIDDF--------SHTILKVKLVRPKANTFVSRISHLLFVATEKEVMILGVSKDT-----KT 165 (1263)
T ss_pred EcCCEEEEEecCCCcchhhhhhh--------hhheeEEEEeccCCcccHHhhhhhhhhhhhheeeEEEEEecc-----cc
Confidence 35899999999877655554432 133444555444332100000122333334556666665544 23
Q ss_pred ceEEEEEeec-----CCceEEEEecCCCCEEEEeeCCCeEEEEEC
Q 019405 152 STVKSWNVCA-----SGTIAFSKVDISEKFSLFGGKGVEVNVWDL 191 (341)
Q Consensus 152 ~~v~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~ 191 (341)
+.+.+++..- +-.|.|+.-+.+|+.+++|-.| +.+|.+
T Consensus 166 ~Els~fnTgl~vsvqGinV~civs~e~GrIFf~g~~d--~nvyEl 208 (1263)
T COG5308 166 GELSLFNTGLVVSVQGINVRCIVSEEDGRIFFGGEND--PNVYEL 208 (1263)
T ss_pred ceeEEEecceEEeccCceeEEEEeccCCcEEEecCCC--CCeEEE
Confidence 3555555322 3457788888889988888777 667765
No 497
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=76.87 E-value=15 Score=30.59 Aligned_cols=70 Identities=16% Similarity=0.244 Sum_probs=48.3
Q ss_pred eEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCc----eeEEEecCCCCEEEEEeCCCcEEEEEc
Q 019405 261 IKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGS----IRSIARHPTLPIIASCGLDSYLRFWDI 330 (341)
Q Consensus 261 v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~----i~~~~~~~~~~~l~s~~~dg~v~iwd~ 330 (341)
++++...++|.+|++.-.-..|.+.|.++|+.+..+.+...+. -...+|-.+-+++-.+..++.|.+||-
T Consensus 146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN 219 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDN 219 (299)
T ss_pred eeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence 6677888899999999888999999999999998886641111 111333334444544566777777776
No 498
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=75.80 E-value=63 Score=29.37 Aligned_cols=268 Identities=14% Similarity=0.124 Sum_probs=116.6
Q ss_pred CCCceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCe--EEEeeCCCCcchh
Q 019405 12 CPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGL--TDILNPLNGDLRV 89 (341)
Q Consensus 12 ~~~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~--i~iw~~~~~~~~~ 89 (341)
....+++-++++|.+-...+..... .. .+..++.-.....++++..++ +.+|..|+.-|. +.-|....-+.+.
T Consensus 220 ~~~~~~lL~~e~G~l~~l~l~~~~~-~i-~i~~~g~~~~~~s~l~~l~~g---~d~lf~gs~~gds~l~~~~~~~l~~~~ 294 (504)
T PF10433_consen 220 KDGDRILLQDEDGDLYLLTLDNDGG-SI-SITYLGTLCSIASSLTYLKNG---GDYLFVGSEFGDSQLLQISLSNLEVLD 294 (504)
T ss_dssp TTSSEEEEEETTSEEEEEEEEEEEE-EE-EEEEEEE--S-ESEEEEESTT-----EEEEEESSS-EEEEEEESESEEEEE
T ss_pred CCCCEEEEEeCCCeEEEEEEEECCC-eE-EEEEcCCcCChhheEEEEcCC---CEEEEEEEecCCcEEEEEeCCCcEEEE
Confidence 3456788889999998888877621 11 122332213333444544444 346777776554 4445533333444
Q ss_pred eeeccCCCCCCCCCCceeeEeeeeccccccccc--cceeEEEc---ccceeEEEEeeecccccccCCceEEEEEeecCCc
Q 019405 90 AISNAGDSGAQPEDDGIVGLHLFKRQREESSSR--SRTLLTCT---TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGT 164 (341)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~---~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~ 164 (341)
.+... +++..+...+......... ...+++++ .+|.+++..-...... ..+..-....-..
T Consensus 295 ~~~N~---------~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~-----~~~~~~~l~~v~~ 360 (504)
T PF10433_consen 295 SLPNW---------GPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEG-----LELASSELPGVTG 360 (504)
T ss_dssp EE-------------SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE-------EEEEEEESTEEE
T ss_pred eccCc---------CCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCcee-----eeeeccCCCCceE
Confidence 44433 7788777765432110000 01455553 3566666542211110 0011111111122
Q ss_pred eEEEEecC-CCCEEEEeeCCCeEEEEECC---CCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEE
Q 019405 165 IAFSKVDI-SEKFSLFGGKGVEVNVWDLD---KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVR 240 (341)
Q Consensus 165 i~~~~~~~-~~~~l~~~~~d~~v~i~d~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~ 240 (341)
++.+.... +..+++....+ .-+++.+. ..+.+....... +.. ....+.+-.+ . +..++-... ..|+
T Consensus 361 iW~l~~~~~~~~~lv~S~~~-~T~vl~~~~~d~~e~~~e~~~~~---f~~-~~~Tl~~~~~--~--~~~ivQVt~-~~i~ 430 (504)
T PF10433_consen 361 IWTLKLSSSDHSYLVLSFPN-ETRVLQISEGDDGEEVEEVEEDG---FDT-DEPTLAAGNV--G--DGRIVQVTP-KGIR 430 (504)
T ss_dssp EEEE-SSSSSBSEEEEEESS-EEEEEEES----SSEEEEE---T---S-S-SS-EEEEEEE--T--TTEEEEEES-SEEE
T ss_pred EEEeeecCCCceEEEEEcCC-ceEEEEEecccCCcchhhhhhcc---CCC-CCCCeEEEEc--C--CCeEEEEec-CeEE
Confidence 33333322 24566665554 44455553 333333221110 000 0112333333 2 445555544 3588
Q ss_pred EEEcCCCCceeEEEEe-cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEecc----ccCceeEEEecC
Q 019405 241 LYDTSAQRRPVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK----CSGSIRSIARHP 311 (341)
Q Consensus 241 iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~----~~~~i~~~~~~~ 311 (341)
+.+....+. ...+.. ....|.+.+.+ +.+++.+..++.+..+.+............ ....|.++...|
T Consensus 431 l~~~~~~~~-~~~w~~~~~~~I~~a~~~--~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 431 LIDLEDGKL-TQEWKPPAGSIIVAASIN--DPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp EEESSSTSE-EEEEE-TTS---SEEEES--SSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred EEECCCCeE-EEEEeCCCCCeEEEEEEC--CCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 888776543 444433 33456555554 346777777888999988776654332211 256788887765
No 499
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=75.17 E-value=8 Score=18.77 Aligned_cols=23 Identities=9% Similarity=0.015 Sum_probs=13.3
Q ss_pred eEEEecCCCCEEEEEeCCCcEEE
Q 019405 305 RSIARHPTLPIIASCGLDSYLRF 327 (341)
Q Consensus 305 ~~~~~~~~~~~l~s~~~dg~v~i 327 (341)
..++.+++|+++++-+....|++
T Consensus 5 ~gvav~~~g~i~VaD~~n~rV~v 27 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSGNHRVQV 27 (28)
T ss_dssp EEEEEETTSEEEEEECCCTEEEE
T ss_pred cEEEEeCCCCEEEEECCCCEEEE
Confidence 45666666666665555555554
No 500
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=74.72 E-value=47 Score=27.45 Aligned_cols=193 Identities=10% Similarity=0.008 Sum_probs=0.0
Q ss_pred cccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccC
Q 019405 130 TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLG 209 (341)
Q Consensus 130 ~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~ 209 (341)
.....+.+.++...+. ....+.+-.+.....+..+.++ +++...+..+.-++|.|+.+...-.........
T Consensus 58 ~qG~~l~i~ditn~~~----~t~~~l~~~i~~~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~--- 128 (370)
T COG5276 58 GQGFILAILDITNVSL----QTHDVLLSVINARDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTD--- 128 (370)
T ss_pred ccCceEeeccccCccc----ccCcceEEEEehhhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCC---
Q ss_pred ccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCC
Q 019405 210 IFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT 289 (341)
Q Consensus 210 ~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~ 289 (341)
+.-.++.. .|++..++..|.-+-+.|+.+...|...-+.....--.=...-.|++-+.+..|+-+.|-|+.+
T Consensus 129 ----gyaygv~v----sGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSn 200 (370)
T COG5276 129 ----GYAYGVYV----SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSN 200 (370)
T ss_pred ----ceEEEEEe----cCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEecCeEEEEEeCCCeEEEEccC
Q ss_pred CeEEeEEeccccC-ceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeeecC
Q 019405 290 GKLLGCFIGKCSG-SIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVCS 341 (341)
Q Consensus 290 ~~~~~~~~~~~~~-~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~s 341 (341)
.....-+.....+ .+.++..+++..+++...+. +.+-|..+-+....+-|
T Consensus 201 p~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~eg--vlivd~s~~ssp~~~gs 251 (370)
T COG5276 201 PHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEG--VLIVDVSGPSSPTVFGS 251 (370)
T ss_pred CCCCeEEEEEecCCceEEEEecCCeeEEEEcccc--eEEEecCCCCCceEeec
Done!