Query 019405
Match_columns 341
No_of_seqs 518 out of 1988
Neff 11.6
Searched_HMMs 29240
Date Mon Mar 25 15:35:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019405.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019405hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ow8_A WD repeat-containing pr 100.0 2.8E-44 9.6E-49 300.4 38.2 272 15-331 49-320 (321)
2 1vyh_C Platelet-activating fac 100.0 3.3E-44 1.1E-48 310.1 34.0 269 16-331 122-410 (410)
3 2ynn_A Coatomer subunit beta'; 100.0 1.3E-42 4.5E-47 288.3 36.1 258 41-339 5-266 (304)
4 3ow8_A WD repeat-containing pr 100.0 1.1E-42 3.9E-47 290.6 33.5 262 41-340 24-287 (321)
5 1got_B GT-beta; complex (GTP-b 100.0 1.1E-41 3.7E-46 287.3 35.8 267 15-329 68-340 (340)
6 2ynn_A Coatomer subunit beta'; 100.0 1.5E-41 5.3E-46 281.9 35.8 274 15-332 26-302 (304)
7 4gqb_B Methylosome protein 50; 100.0 7.7E-42 2.6E-46 287.7 31.7 249 48-334 81-333 (344)
8 1vyh_C Platelet-activating fac 100.0 1.5E-41 5.2E-46 293.4 33.1 255 43-339 102-376 (410)
9 3frx_A Guanine nucleotide-bind 100.0 2E-40 6.7E-45 277.1 37.5 275 15-333 31-318 (319)
10 3iz6_a 40S ribosomal protein R 100.0 1.5E-41 5.1E-46 290.7 30.5 283 15-335 79-378 (380)
11 2pbi_B Guanine nucleotide-bind 100.0 2.2E-40 7.4E-45 280.7 36.6 268 15-329 77-354 (354)
12 1nr0_A Actin interacting prote 100.0 1E-40 3.5E-45 302.5 36.2 298 15-334 161-569 (611)
13 4g56_B MGC81050 protein; prote 100.0 3.1E-41 1.1E-45 286.1 30.8 254 44-335 89-346 (357)
14 3fm0_A Protein CIAO1; WDR39,SG 100.0 8.2E-40 2.8E-44 276.3 34.8 284 15-338 29-341 (345)
15 1got_B GT-beta; complex (GTP-b 100.0 2.9E-39 1E-43 272.4 36.8 262 40-339 46-308 (340)
16 2xzm_R RACK1; ribosome, transl 100.0 3.2E-39 1.1E-43 272.6 36.5 277 14-334 39-342 (343)
17 1erj_A Transcriptional repress 100.0 2.1E-39 7E-44 278.7 35.3 273 21-333 82-390 (393)
18 2pbi_B Guanine nucleotide-bind 100.0 5.6E-39 1.9E-43 272.0 37.0 266 41-339 56-322 (354)
19 4ery_A WD repeat-containing pr 100.0 4.1E-39 1.4E-43 268.4 35.0 271 15-331 36-311 (312)
20 1nr0_A Actin interacting prote 100.0 3.5E-39 1.2E-43 292.4 34.2 267 23-338 38-361 (611)
21 4aow_A Guanine nucleotide-bind 100.0 2.6E-38 9E-43 266.5 37.3 277 15-334 52-339 (340)
22 2hes_X YDR267CP; beta-propelle 100.0 8.4E-39 2.9E-43 268.4 33.9 276 16-332 26-328 (330)
23 1sq9_A Antiviral protein SKI8; 100.0 6.4E-39 2.2E-43 276.1 32.4 294 15-334 27-397 (397)
24 3iz6_a 40S ribosomal protein R 100.0 4.2E-39 1.4E-43 275.6 28.6 273 40-339 57-336 (380)
25 4ery_A WD repeat-containing pr 100.0 7.9E-38 2.7E-42 260.7 34.0 258 40-339 14-275 (312)
26 4gqb_B Methylosome protein 50; 100.0 2.9E-38 9.8E-43 266.0 31.0 259 47-337 28-294 (344)
27 4g56_B MGC81050 protein; prote 100.0 1.2E-38 4.1E-43 270.2 27.9 278 18-339 20-308 (357)
28 2ymu_A WD-40 repeat protein; u 100.0 1.9E-37 6.5E-42 279.7 36.8 262 15-329 316-577 (577)
29 2pm7_B Protein transport prote 100.0 1E-37 3.6E-42 258.0 31.5 250 44-331 4-284 (297)
30 3zwl_B Eukaryotic translation 100.0 5.8E-37 2E-41 260.9 36.9 283 15-337 45-351 (369)
31 2ymu_A WD-40 repeat protein; u 100.0 2.5E-37 8.4E-42 278.9 36.2 281 15-339 234-545 (577)
32 4aez_A CDC20, WD repeat-contai 100.0 3E-37 1E-41 266.1 34.7 276 15-339 104-387 (401)
33 3k26_A Polycomb protein EED; W 100.0 3.5E-38 1.2E-42 268.3 28.4 288 15-332 35-366 (366)
34 3dm0_A Maltose-binding peripla 100.0 2.2E-37 7.5E-42 284.9 35.6 276 15-332 396-693 (694)
35 3fm0_A Protein CIAO1; WDR39,SG 100.0 3.6E-37 1.2E-41 260.2 33.1 259 40-333 6-284 (345)
36 1k8k_C P40, ARP2/3 complex 41 100.0 2.2E-37 7.6E-42 264.0 31.9 282 15-336 21-365 (372)
37 3frx_A Guanine nucleotide-bind 100.0 8E-37 2.7E-41 255.2 33.8 255 40-338 8-273 (319)
38 2hes_X YDR267CP; beta-propelle 100.0 1E-36 3.6E-41 255.7 33.7 261 40-334 5-282 (330)
39 4gga_A P55CDC, cell division c 100.0 3.5E-36 1.2E-40 261.0 37.2 272 16-336 117-399 (420)
40 1r5m_A SIR4-interacting protei 100.0 9.9E-37 3.4E-41 264.4 33.3 281 16-331 60-424 (425)
41 2pm9_A Protein WEB1, protein t 100.0 1.5E-37 5E-42 269.2 27.7 287 21-336 42-341 (416)
42 1erj_A Transcriptional repress 100.0 2.4E-36 8.1E-41 259.6 34.9 257 47-339 62-348 (393)
43 3odt_A Protein DOA1; ubiquitin 100.0 1.2E-35 4E-40 247.3 36.8 269 15-338 30-302 (313)
44 1gxr_A ESG1, transducin-like e 100.0 1.2E-35 4E-40 249.8 36.8 267 17-331 66-336 (337)
45 4ggc_A P55CDC, cell division c 100.0 5.1E-36 1.7E-40 250.1 34.0 273 17-334 38-317 (318)
46 2j04_B YDR362CP, TAU91; beta p 100.0 2E-37 6.7E-42 273.5 26.2 287 17-332 176-517 (524)
47 3vl1_A 26S proteasome regulato 100.0 2.9E-37 1E-41 267.7 26.5 280 16-333 70-366 (420)
48 4e54_B DNA damage-binding prot 100.0 5.1E-37 1.7E-41 267.4 28.1 281 16-336 134-434 (435)
49 3i2n_A WD repeat-containing pr 100.0 1.3E-36 4.3E-41 257.9 29.7 278 17-336 34-357 (357)
50 2xzm_R RACK1; ribosome, transl 100.0 9.3E-36 3.2E-40 251.4 34.8 257 41-336 13-289 (343)
51 3v7d_B Cell division control p 100.0 8.3E-36 2.8E-40 262.0 35.3 281 14-338 132-427 (464)
52 3f3f_A Nucleoporin SEH1; struc 100.0 9.4E-36 3.2E-40 251.3 33.1 272 44-339 6-344 (351)
53 3bg1_A Protein SEC13 homolog; 100.0 8.4E-37 2.9E-41 254.7 26.2 250 44-331 8-292 (316)
54 2pm9_A Protein WEB1, protein t 100.0 4.8E-37 1.6E-41 266.0 25.1 282 15-333 80-415 (416)
55 3ei3_B DNA damage-binding prot 100.0 1.6E-35 5.4E-40 253.8 33.2 271 15-332 87-382 (383)
56 1sq9_A Antiviral protein SKI8; 100.0 1.4E-35 4.8E-40 255.2 32.2 268 41-340 8-330 (397)
57 1p22_A F-BOX/WD-repeat protein 100.0 9.9E-36 3.4E-40 259.3 31.0 268 14-337 143-419 (435)
58 3gre_A Serine/threonine-protei 100.0 3.4E-36 1.2E-40 262.5 27.7 270 40-339 53-366 (437)
59 4h5i_A Guanine nucleotide-exch 100.0 2.2E-35 7.4E-40 250.9 31.5 280 25-333 44-344 (365)
60 1gxr_A ESG1, transducin-like e 100.0 1.8E-34 6.1E-39 242.6 35.9 286 14-338 11-302 (337)
61 3jrp_A Fusion protein of prote 100.0 1.8E-35 6E-40 252.8 30.2 257 41-334 3-289 (379)
62 3vl1_A 26S proteasome regulato 100.0 9.8E-35 3.4E-39 251.8 35.0 273 15-332 110-419 (420)
63 4a11_B DNA excision repair pro 100.0 2E-35 6.8E-40 254.9 30.5 278 23-338 22-371 (408)
64 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.8E-34 9.5E-39 250.9 37.4 266 15-339 130-398 (445)
65 3gre_A Serine/threonine-protei 100.0 6.5E-36 2.2E-40 260.7 26.1 286 15-329 77-437 (437)
66 3ei3_B DNA damage-binding prot 100.0 1E-34 3.5E-39 248.7 32.9 260 40-339 64-346 (383)
67 4aow_A Guanine nucleotide-bind 100.0 4.7E-34 1.6E-38 240.4 36.0 264 40-339 29-293 (340)
68 2aq5_A Coronin-1A; WD40 repeat 100.0 2E-35 6.8E-40 254.8 28.0 277 19-335 52-345 (402)
69 3dwl_C Actin-related protein 2 100.0 6E-36 2.1E-40 255.8 24.5 274 15-330 24-377 (377)
70 3dm0_A Maltose-binding peripla 100.0 1.3E-34 4.4E-39 266.5 34.4 259 41-339 374-639 (694)
71 1pgu_A Actin interacting prote 100.0 7.8E-35 2.7E-39 264.4 31.4 279 16-332 175-614 (615)
72 3zwl_B Eukaryotic translation 100.0 3.8E-34 1.3E-38 243.5 33.4 269 37-339 20-311 (369)
73 2oaj_A Protein SNI1; WD40 repe 100.0 6.7E-34 2.3E-38 267.0 37.7 292 15-337 30-610 (902)
74 3dw8_B Serine/threonine-protei 100.0 7.9E-35 2.7E-39 254.4 29.1 273 48-337 27-378 (447)
75 3sfz_A APAF-1, apoptotic pepti 100.0 2.8E-34 9.7E-39 280.2 33.7 288 15-337 628-1039(1249)
76 1k8k_C P40, ARP2/3 complex 41 100.0 4.7E-34 1.6E-38 243.5 30.8 246 46-332 5-274 (372)
77 3mkq_A Coatomer beta'-subunit; 100.0 5.4E-34 1.9E-38 267.1 33.7 257 41-339 5-266 (814)
78 2oaj_A Protein SNI1; WD40 repe 100.0 5.7E-34 2E-38 267.5 33.7 308 15-339 165-671 (902)
79 3odt_A Protein DOA1; ubiquitin 100.0 1.7E-33 6E-38 234.2 32.7 253 40-339 9-262 (313)
80 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.5E-33 8.4E-38 244.9 35.1 261 15-332 170-442 (445)
81 3sfz_A APAF-1, apoptotic pepti 100.0 9.2E-35 3.1E-39 283.7 28.7 297 13-339 712-1165(1249)
82 3mkq_A Coatomer beta'-subunit; 100.0 1.4E-33 4.7E-38 264.3 34.6 278 15-335 26-305 (814)
83 2j04_B YDR362CP, TAU91; beta p 100.0 4.1E-35 1.4E-39 258.8 22.1 244 66-332 174-428 (524)
84 4e54_B DNA damage-binding prot 100.0 1.8E-34 6.3E-39 251.2 25.6 261 43-340 113-395 (435)
85 3k26_A Polycomb protein EED; W 100.0 1.8E-34 6.2E-39 245.3 24.8 265 45-336 14-322 (366)
86 2xyi_A Probable histone-bindin 100.0 3.8E-33 1.3E-37 242.5 32.6 257 45-333 124-411 (430)
87 2w18_A PALB2, fancn, partner a 100.0 2E-33 6.7E-38 228.8 28.5 261 7-330 47-355 (356)
88 1r5m_A SIR4-interacting protei 100.0 5.3E-33 1.8E-37 240.9 32.7 262 47-334 43-363 (425)
89 3dwl_C Actin-related protein 2 100.0 5.1E-35 1.7E-39 250.1 18.8 245 48-331 10-280 (377)
90 3dw8_B Serine/threonine-protei 100.0 3.5E-33 1.2E-37 244.0 30.8 294 15-331 41-445 (447)
91 3mmy_A MRNA export factor; mRN 100.0 1.7E-33 5.9E-38 239.4 28.0 264 40-331 30-345 (368)
92 1yfq_A Cell cycle arrest prote 100.0 6.6E-33 2.3E-37 233.7 31.0 276 15-329 24-321 (342)
93 3lrv_A PRE-mRNA-splicing facto 100.0 8E-34 2.7E-38 239.6 23.9 238 64-334 47-294 (343)
94 3jro_A Fusion protein of prote 100.0 5.9E-34 2E-38 263.7 24.8 253 43-334 3-287 (753)
95 3v7d_B Cell division control p 100.0 4.8E-32 1.6E-36 238.0 34.6 257 42-338 114-387 (464)
96 1yfq_A Cell cycle arrest prote 100.0 8.4E-33 2.9E-37 233.0 28.6 251 45-339 7-289 (342)
97 3i2n_A WD repeat-containing pr 100.0 2.8E-33 9.6E-38 237.2 25.1 260 44-334 13-293 (357)
98 1pgu_A Actin interacting prote 100.0 5.3E-32 1.8E-36 245.7 34.3 275 22-339 37-335 (615)
99 1l0q_A Surface layer protein; 100.0 6.9E-31 2.3E-35 225.6 37.2 272 15-339 3-282 (391)
100 2pm7_B Protein transport prote 100.0 1.3E-31 4.5E-36 221.4 30.3 238 14-288 21-284 (297)
101 4aez_A CDC20, WD repeat-contai 100.0 1.8E-31 6.2E-36 229.9 32.3 249 45-337 87-341 (401)
102 3lrv_A PRE-mRNA-splicing facto 100.0 1.7E-32 5.7E-37 231.5 25.0 264 14-331 48-332 (343)
103 1p22_A F-BOX/WD-repeat protein 100.0 2.8E-31 9.4E-36 231.3 32.5 234 47-334 131-367 (435)
104 4h5i_A Guanine nucleotide-exch 100.0 2.2E-32 7.5E-37 232.4 24.9 266 49-339 14-307 (365)
105 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3.2E-31 1.1E-35 231.8 32.2 250 50-333 5-342 (450)
106 3vu4_A KMHSV2; beta-propeller 100.0 1.4E-31 4.7E-36 226.7 27.8 243 41-334 11-273 (355)
107 3bg1_A Protein SEC13 homolog; 100.0 6.1E-32 2.1E-36 225.3 25.0 238 15-288 26-292 (316)
108 2aq5_A Coronin-1A; WD40 repeat 100.0 1.9E-31 6.5E-36 229.9 28.5 254 52-335 37-302 (402)
109 4gq1_A NUP37; propeller, trans 100.0 4.7E-31 1.6E-35 226.6 29.2 299 16-331 32-388 (393)
110 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.4E-30 4.8E-35 227.7 32.4 244 51-332 104-391 (450)
111 4a11_B DNA excision repair pro 100.0 1.9E-30 6.6E-35 223.7 30.6 285 15-332 57-405 (408)
112 3f3f_A Nucleoporin SEH1; struc 100.0 1.7E-30 5.8E-35 219.0 28.0 252 15-296 24-344 (351)
113 3vu4_A KMHSV2; beta-propeller 100.0 6.6E-30 2.3E-34 216.4 29.7 253 26-334 42-338 (355)
114 2j04_A TAU60, YPL007P, hypothe 100.0 2.3E-30 7.9E-35 224.0 25.6 233 45-331 48-296 (588)
115 3bws_A Protein LP49; two-domai 100.0 8.3E-29 2.8E-33 215.5 34.2 266 16-332 136-432 (433)
116 3jrp_A Fusion protein of prote 100.0 8.6E-30 2.9E-34 217.5 26.9 236 15-289 24-287 (379)
117 4gga_A P55CDC, cell division c 100.0 1.3E-28 4.4E-33 213.4 32.8 244 52-339 108-360 (420)
118 2j04_A TAU60, YPL007P, hypothe 100.0 9.9E-30 3.4E-34 220.1 21.1 232 46-335 12-257 (588)
119 3bws_A Protein LP49; two-domai 100.0 8.3E-28 2.8E-32 209.1 33.4 279 19-339 94-397 (433)
120 3mmy_A MRNA export factor; mRN 100.0 1.2E-27 4.1E-32 203.3 28.6 213 101-339 37-311 (368)
121 4gq1_A NUP37; propeller, trans 100.0 1.9E-28 6.4E-33 210.4 23.2 256 15-287 102-387 (393)
122 4ggc_A P55CDC, cell division c 100.0 4.7E-27 1.6E-31 195.8 30.7 244 52-339 28-280 (318)
123 1l0q_A Surface layer protein; 100.0 1.4E-26 4.9E-31 198.6 32.9 231 67-339 4-240 (391)
124 2xyi_A Probable histone-bindin 100.0 2.5E-27 8.6E-32 205.9 28.2 247 15-290 142-411 (430)
125 3jro_A Fusion protein of prote 100.0 8.3E-27 2.8E-31 216.0 27.6 207 101-334 7-240 (753)
126 1nir_A Nitrite reductase; hemo 100.0 2.8E-25 9.5E-30 197.6 31.1 293 15-340 191-522 (543)
127 2w18_A PALB2, fancn, partner a 100.0 7.1E-25 2.4E-29 178.7 30.1 238 67-339 56-321 (356)
128 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.5E-24 5.3E-29 187.1 28.3 268 22-339 87-393 (415)
129 1nir_A Nitrite reductase; hemo 99.9 3.5E-24 1.2E-28 190.5 31.2 272 15-336 150-462 (543)
130 1pby_B Quinohemoprotein amine 99.9 3.7E-24 1.3E-28 179.7 27.2 277 16-339 3-317 (337)
131 1ri6_A Putative isomerase YBHE 99.9 2.5E-22 8.4E-27 168.9 34.6 275 17-334 8-312 (343)
132 2ojh_A Uncharacterized protein 99.9 2.7E-23 9.2E-28 170.9 24.5 256 20-323 18-293 (297)
133 3vgz_A Uncharacterized protein 99.9 1.5E-21 5.1E-26 164.9 32.5 247 50-339 41-310 (353)
134 3u4y_A Uncharacterized protein 99.9 6.1E-22 2.1E-26 165.9 29.2 275 15-334 11-306 (331)
135 2hqs_A Protein TOLB; TOLB, PAL 99.9 6.4E-22 2.2E-26 170.8 29.2 237 24-314 159-410 (415)
136 3hfq_A Uncharacterized protein 99.9 6.9E-21 2.4E-25 160.6 32.2 277 22-336 14-323 (347)
137 1jmx_B Amine dehydrogenase; ox 99.9 1.3E-21 4.3E-26 165.0 25.8 238 63-339 9-332 (349)
138 2oit_A Nucleoporin 214KDA; NH2 99.9 2.5E-22 8.6E-27 173.9 21.5 198 125-333 50-279 (434)
139 2ojh_A Uncharacterized protein 99.9 1.6E-21 5.6E-26 160.2 23.3 225 71-335 18-261 (297)
140 3u4y_A Uncharacterized protein 99.9 3E-20 1E-24 155.6 29.6 230 67-335 12-255 (331)
141 3scy_A Hypothetical bacterial 99.9 3.1E-19 1E-23 151.4 36.0 285 15-337 14-344 (361)
142 1xfd_A DIP, dipeptidyl aminope 99.9 9.6E-21 3.3E-25 175.2 27.8 278 16-332 29-393 (723)
143 3vgz_A Uncharacterized protein 99.9 1.3E-19 4.5E-24 152.9 31.9 263 23-323 68-335 (353)
144 2z3z_A Dipeptidyl aminopeptida 99.9 1.1E-20 3.6E-25 174.4 27.0 277 22-334 99-437 (706)
145 2z3z_A Dipeptidyl aminopeptida 99.9 1.2E-20 4.3E-25 174.0 26.4 274 16-334 37-393 (706)
146 2ecf_A Dipeptidyl peptidase IV 99.9 4.1E-20 1.4E-24 171.4 29.6 242 52-337 111-419 (741)
147 1ri6_A Putative isomerase YBHE 99.9 1.1E-19 3.7E-24 152.7 28.5 230 68-331 8-261 (343)
148 2ecf_A Dipeptidyl peptidase IV 99.9 9.7E-21 3.3E-25 175.6 23.6 257 49-331 36-366 (741)
149 1k32_A Tricorn protease; prote 99.9 1.1E-19 3.7E-24 174.3 30.9 271 17-333 217-503 (1045)
150 3o4h_A Acylamino-acid-releasin 99.9 5.3E-21 1.8E-25 172.5 20.4 239 48-336 20-278 (582)
151 1pby_B Quinohemoprotein amine 99.9 4.8E-20 1.6E-24 154.5 23.9 233 66-339 2-276 (337)
152 2oit_A Nucleoporin 214KDA; NH2 99.9 1.4E-21 4.6E-26 169.4 13.7 170 163-337 37-227 (434)
153 1jof_A Carboxy-CIS,CIS-muconat 99.9 9.9E-19 3.4E-23 148.4 30.7 283 16-333 4-342 (365)
154 1k32_A Tricorn protease; prote 99.9 3E-19 1E-23 171.3 28.6 242 44-334 198-463 (1045)
155 1xfd_A DIP, dipeptidyl aminope 99.9 2.2E-20 7.6E-25 172.7 19.2 252 52-334 19-347 (723)
156 3o4h_A Acylamino-acid-releasin 99.9 2.7E-19 9.1E-24 161.4 25.0 255 17-332 36-315 (582)
157 3hfq_A Uncharacterized protein 99.8 3E-17 1E-21 138.3 31.1 252 17-293 53-323 (347)
158 1jmx_B Amine dehydrogenase; ox 99.8 5E-17 1.7E-21 136.8 28.0 250 15-299 12-335 (349)
159 3scy_A Hypothetical bacterial 99.8 5.9E-16 2E-20 131.1 34.7 271 17-310 64-360 (361)
160 1q7f_A NHL, brain tumor CG1071 99.8 1.7E-16 5.9E-21 129.9 30.0 248 50-335 30-283 (286)
161 1z68_A Fibroblast activation p 99.8 1E-18 3.5E-23 161.5 18.4 280 16-332 28-391 (719)
162 1z68_A Fibroblast activation p 99.8 2.2E-19 7.5E-24 166.0 13.4 249 54-334 20-348 (719)
163 4a5s_A Dipeptidyl peptidase 4 99.8 1.5E-17 5.2E-22 154.0 21.6 254 51-335 18-356 (740)
164 2oiz_A Aromatic amine dehydrog 99.8 4.2E-16 1.4E-20 131.7 28.6 277 22-339 29-343 (361)
165 3fvz_A Peptidyl-glycine alpha- 99.8 1.9E-16 6.6E-21 132.3 26.0 253 49-332 23-322 (329)
166 3pe7_A Oligogalacturonate lyas 99.7 1.6E-15 5.4E-20 129.7 25.9 246 45-331 76-381 (388)
167 3azo_A Aminopeptidase; POP fam 99.7 9.7E-16 3.3E-20 140.3 25.0 252 45-334 19-327 (662)
168 1jof_A Carboxy-CIS,CIS-muconat 99.7 6.9E-15 2.4E-19 124.7 28.3 241 67-336 4-296 (365)
169 3no2_A Uncharacterized protein 99.7 8E-15 2.7E-19 118.9 27.4 238 65-339 5-259 (276)
170 3dsm_A Uncharacterized protein 99.7 1.2E-14 4.2E-19 121.2 28.3 265 22-339 15-308 (328)
171 3pe7_A Oligogalacturonate lyas 99.7 1.2E-15 4.1E-20 130.4 21.7 235 61-335 43-332 (388)
172 1qks_A Cytochrome CD1 nitrite 99.7 1.3E-13 4.3E-18 122.6 32.6 292 15-339 168-545 (567)
173 2oiz_A Aromatic amine dehydrog 99.7 8.9E-15 3E-19 123.6 22.2 233 51-314 109-360 (361)
174 1rwi_B Serine/threonine-protei 99.7 3.7E-14 1.3E-18 114.9 24.7 243 51-336 25-268 (270)
175 3azo_A Aminopeptidase; POP fam 99.7 5.1E-14 1.7E-18 128.9 27.4 283 16-335 37-372 (662)
176 2dg1_A DRP35, lactonase; beta 99.7 4.7E-13 1.6E-17 111.9 30.4 251 21-322 24-300 (333)
177 3c5m_A Oligogalacturonate lyas 99.7 6.6E-14 2.3E-18 119.8 25.7 235 55-334 86-386 (396)
178 2xdw_A Prolyl endopeptidase; a 99.7 3.9E-14 1.3E-18 130.6 25.7 244 51-334 126-416 (710)
179 3no2_A Uncharacterized protein 99.7 5.1E-14 1.8E-18 114.2 22.5 189 123-339 5-202 (276)
180 4a5s_A Dipeptidyl peptidase 4 99.6 6.9E-14 2.4E-18 129.5 25.8 270 16-321 29-383 (740)
181 3e5z_A Putative gluconolactona 99.6 5.3E-13 1.8E-17 109.6 28.5 236 51-335 29-289 (296)
182 2dg1_A DRP35, lactonase; beta 99.6 1.5E-13 5.3E-18 114.8 24.4 244 52-339 8-269 (333)
183 3c5m_A Oligogalacturonate lyas 99.6 1.6E-14 5.3E-19 123.7 17.8 237 52-335 38-332 (396)
184 3fvz_A Peptidyl-glycine alpha- 99.6 2.2E-13 7.6E-18 113.7 24.3 173 163-339 91-284 (329)
185 3dsm_A Uncharacterized protein 99.6 4.8E-13 1.6E-17 111.5 25.5 232 73-336 15-257 (328)
186 2z2n_A Virginiamycin B lyase; 99.6 1.7E-11 5.8E-16 100.5 33.6 239 48-334 13-256 (299)
187 2bkl_A Prolyl endopeptidase; m 99.6 2.4E-13 8.3E-18 125.0 24.9 245 51-335 122-400 (695)
188 1q7f_A NHL, brain tumor CG1071 99.6 1.7E-12 5.8E-17 106.0 25.7 191 125-339 43-244 (286)
189 2z2n_A Virginiamycin B lyase; 99.6 4.3E-11 1.5E-15 98.1 33.8 237 49-334 56-297 (299)
190 3sjl_D Methylamine dehydrogena 99.6 6.4E-12 2.2E-16 105.2 27.9 284 15-339 45-370 (386)
191 1qks_A Cytochrome CD1 nitrite 99.6 2E-11 6.8E-16 108.6 32.4 243 66-339 168-435 (567)
192 2gop_A Trilobed protease; beta 99.6 7.7E-13 2.6E-17 111.2 22.4 205 74-335 42-294 (347)
193 2mad_H Methylamine dehydrogena 99.6 1.2E-10 4.1E-15 98.5 35.4 281 15-338 33-356 (373)
194 1kb0_A Quinohemoprotein alcoho 99.6 2.8E-12 9.5E-17 116.9 27.1 248 66-340 129-515 (677)
195 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 4.8E-12 1.7E-16 104.7 25.7 242 51-332 19-299 (314)
196 1yiq_A Quinohemoprotein alcoho 99.5 8.8E-12 3E-16 113.9 28.7 247 66-339 122-512 (689)
197 3e5z_A Putative gluconolactona 99.5 1.3E-11 4.4E-16 101.3 26.8 190 125-339 42-252 (296)
198 2gop_A Trilobed protease; beta 99.5 2.7E-12 9.3E-17 107.8 23.2 222 51-334 60-332 (347)
199 2xdw_A Prolyl endopeptidase; a 99.5 8.5E-12 2.9E-16 115.1 28.1 195 125-339 138-375 (710)
200 1yr2_A Prolyl oligopeptidase; 99.5 4.6E-12 1.6E-16 117.4 26.0 243 51-334 164-443 (741)
201 3c75_H MADH, methylamine dehyd 99.5 1.7E-11 5.9E-16 104.4 26.9 275 24-339 99-409 (426)
202 1xip_A Nucleoporin NUP159; bet 99.5 1.1E-12 3.7E-17 110.3 17.6 178 105-318 39-230 (388)
203 2qc5_A Streptogramin B lactona 99.5 5E-10 1.7E-14 91.7 33.1 236 50-331 62-299 (300)
204 2qc5_A Streptogramin B lactona 99.5 5.6E-10 1.9E-14 91.4 33.1 237 50-334 20-261 (300)
205 1xip_A Nucleoporin NUP159; bet 99.5 1.1E-12 3.9E-17 110.1 16.0 155 164-335 39-194 (388)
206 3hrp_A Uncharacterized protein 99.4 6E-10 2.1E-14 95.5 29.0 240 52-330 133-408 (409)
207 3q7m_A Lipoprotein YFGL, BAMB; 99.4 1E-09 3.5E-14 93.2 29.7 277 14-339 53-344 (376)
208 2bkl_A Prolyl endopeptidase; m 99.4 3.9E-11 1.3E-15 110.4 21.9 160 166-338 171-356 (695)
209 3g4e_A Regucalcin; six bladed 99.4 1.1E-09 3.8E-14 89.8 28.1 193 125-339 27-236 (297)
210 1rwi_B Serine/threonine-protei 99.4 8.7E-11 3E-15 94.9 21.0 187 125-334 37-224 (270)
211 2hz6_A Endoplasmic reticulum t 99.4 4E-13 1.4E-17 113.8 6.8 223 65-334 9-238 (369)
212 3g4e_A Regucalcin; six bladed 99.4 4.6E-10 1.6E-14 92.1 24.3 213 66-320 26-260 (297)
213 2hz6_A Endoplasmic reticulum t 99.4 3E-13 1E-17 114.5 5.0 186 125-339 11-199 (369)
214 3iuj_A Prolyl endopeptidase; h 99.3 2.6E-10 9E-15 104.7 22.9 240 52-335 131-408 (693)
215 3q7m_A Lipoprotein YFGL, BAMB; 99.3 2.8E-09 9.5E-14 90.5 27.3 260 15-329 104-375 (376)
216 1pjx_A Dfpase, DIISOPROPYLFLUO 99.3 1.4E-09 4.6E-14 89.9 24.4 189 129-339 42-263 (314)
217 2ghs_A AGR_C_1268P; regucalcin 99.3 4E-09 1.4E-13 87.7 26.9 218 55-320 54-290 (326)
218 1kv9_A Type II quinohemoprotei 99.3 4.6E-09 1.6E-13 95.7 28.7 245 67-339 119-495 (668)
219 1yr2_A Prolyl oligopeptidase; 99.3 7.5E-10 2.6E-14 102.6 23.9 160 166-338 212-400 (741)
220 2ghs_A AGR_C_1268P; regucalcin 99.3 1.1E-08 3.7E-13 85.0 28.1 189 125-339 63-266 (326)
221 2ad6_A Methanol dehydrogenase 99.3 4.4E-09 1.5E-13 93.9 27.2 166 168-339 240-501 (571)
222 1kb0_A Quinohemoprotein alcoho 99.3 8.1E-10 2.8E-14 100.8 22.5 152 175-331 328-566 (677)
223 3sjl_D Methylamine dehydrogena 99.3 1.3E-09 4.6E-14 91.2 21.6 237 62-339 41-327 (386)
224 1mda_H Methylamine dehydrogena 99.3 3.3E-09 1.1E-13 88.9 23.5 275 15-339 32-353 (368)
225 2mad_H Methylamine dehydrogena 99.3 3.9E-08 1.3E-12 83.1 29.8 234 63-339 30-314 (373)
226 3dr2_A Exported gluconolactona 99.3 1.5E-08 5.1E-13 83.4 26.6 221 53-323 48-298 (305)
227 1yiq_A Quinohemoprotein alcoho 99.2 2E-09 6.9E-14 98.4 22.8 79 236-316 454-532 (689)
228 1w6s_A Methanol dehydrogenase 99.2 4.6E-08 1.6E-12 87.4 29.9 168 168-339 246-510 (599)
229 3hrp_A Uncharacterized protein 99.2 1.2E-08 4.1E-13 87.5 25.2 189 125-335 144-357 (409)
230 3hxj_A Pyrrolo-quinoline quino 99.2 3E-09 1E-13 88.4 20.0 260 14-339 30-290 (330)
231 2qe8_A Uncharacterized protein 99.2 3.7E-08 1.3E-12 82.5 25.7 261 37-325 7-314 (343)
232 3c75_H MADH, methylamine dehyd 99.1 1.3E-08 4.6E-13 86.7 21.8 211 53-296 180-409 (426)
233 2ece_A 462AA long hypothetical 99.1 7.7E-08 2.6E-12 81.4 26.0 173 133-320 164-399 (462)
234 3dr2_A Exported gluconolactona 99.1 4.5E-08 1.5E-12 80.5 24.2 190 125-339 59-273 (305)
235 3hxj_A Pyrrolo-quinoline quino 99.1 2.9E-08 1E-12 82.4 23.4 218 67-334 109-326 (330)
236 1fwx_A Nitrous oxide reductase 99.1 5.2E-08 1.8E-12 85.3 24.2 238 68-332 18-361 (595)
237 1flg_A Protein (quinoprotein e 99.1 2.5E-07 8.4E-12 82.8 27.5 167 168-339 251-523 (582)
238 2iwa_A Glutamine cyclotransfer 99.1 7.5E-08 2.6E-12 76.4 21.3 171 154-339 12-188 (266)
239 1fwx_A Nitrous oxide reductase 99.0 3.5E-08 1.2E-12 86.4 20.2 242 55-334 90-433 (595)
240 1npe_A Nidogen, entactin; glyc 99.0 3.5E-06 1.2E-10 67.7 30.1 234 65-339 1-245 (267)
241 3nol_A Glutamine cyclotransfer 99.0 1.5E-07 5.2E-12 73.8 20.0 170 153-339 33-208 (262)
242 2qe8_A Uncharacterized protein 99.0 1.4E-07 4.9E-12 78.9 21.5 166 163-335 67-281 (343)
243 2ece_A 462AA long hypothetical 99.0 1.3E-06 4.3E-11 74.1 25.7 193 125-331 98-351 (462)
244 2iwa_A Glutamine cyclotransfer 98.9 1.2E-06 4.2E-11 69.5 23.8 177 132-333 43-238 (266)
245 3nok_A Glutaminyl cyclase; bet 98.9 3.3E-07 1.1E-11 71.9 19.9 168 154-339 46-217 (268)
246 3mbr_X Glutamine cyclotransfer 98.9 1E-06 3.5E-11 68.5 22.2 170 153-339 11-186 (243)
247 3iuj_A Prolyl endopeptidase; h 98.9 2E-07 6.9E-12 85.6 20.4 155 166-333 178-360 (693)
248 1mda_H Methylamine dehydrogena 98.9 1.3E-07 4.4E-12 79.3 16.9 242 23-311 95-366 (368)
249 1kv9_A Type II quinohemoprotei 98.8 7.8E-07 2.7E-11 81.1 22.2 208 67-297 68-341 (668)
250 1npe_A Nidogen, entactin; glyc 98.8 2.6E-05 8.7E-10 62.5 30.6 251 23-314 9-263 (267)
251 2fp8_A Strictosidine synthase; 98.8 1.5E-05 5.2E-10 65.8 26.8 236 65-333 30-314 (322)
252 3nok_A Glutaminyl cyclase; bet 98.8 8.8E-06 3E-10 63.9 23.4 170 125-320 67-253 (268)
253 2ad6_A Methanol dehydrogenase 98.8 5.1E-06 1.7E-10 74.3 25.0 143 172-318 311-523 (571)
254 3nol_A Glutamine cyclotransfer 98.7 2.3E-05 8E-10 61.5 23.8 171 125-321 55-244 (262)
255 3mbr_X Glutamine cyclotransfer 98.7 5.3E-05 1.8E-09 58.9 25.1 172 125-321 33-223 (243)
256 1w6s_A Methanol dehydrogenase 98.7 7E-06 2.4E-10 73.5 22.4 78 236-315 452-529 (599)
257 1flg_A Protein (quinoprotein e 98.6 1.7E-05 5.7E-10 71.1 22.6 77 236-316 465-543 (582)
258 4a2l_A BT_4663, two-component 98.6 0.00049 1.7E-08 64.3 34.9 250 51-335 264-529 (795)
259 2fp8_A Strictosidine synthase; 98.5 7.1E-05 2.4E-09 61.8 23.4 163 164-339 81-275 (322)
260 4a2l_A BT_4663, two-component 98.5 0.00065 2.2E-08 63.5 32.5 243 51-335 311-574 (795)
261 1k3i_A Galactose oxidase precu 98.5 5.1E-05 1.8E-09 69.2 24.0 236 65-334 198-499 (656)
262 3v65_B Low-density lipoprotein 98.5 0.00033 1.1E-08 59.3 27.6 233 67-339 89-325 (386)
263 3qqz_A Putative uncharacterize 98.5 0.00023 7.8E-09 56.1 25.4 205 104-331 27-252 (255)
264 3v64_C Agrin; beta propeller, 98.5 0.00043 1.5E-08 57.8 28.0 232 67-339 46-282 (349)
265 2p4o_A Hypothetical protein; p 98.3 0.00079 2.7E-08 55.0 28.3 230 53-321 35-277 (306)
266 1ijq_A LDL receptor, low-densi 98.3 0.00089 3.1E-08 55.0 30.5 236 67-339 3-245 (316)
267 3sov_A LRP-6, low-density lipo 98.3 0.001 3.6E-08 54.6 27.3 236 67-339 6-245 (318)
268 2xe4_A Oligopeptidase B; hydro 98.3 6.1E-05 2.1E-09 69.8 18.4 156 164-332 175-354 (751)
269 3tc9_A Hypothetical hydrolase; 98.3 0.00017 5.9E-09 62.0 19.7 155 164-331 138-300 (430)
270 3amr_A 3-phytase; beta-propell 98.2 0.0017 5.8E-08 53.3 23.4 200 66-297 41-272 (355)
271 3p5b_L Low density lipoprotein 98.2 0.0024 8.1E-08 54.3 30.7 238 67-339 85-327 (400)
272 3v9f_A Two-component system se 98.2 0.0049 1.7E-07 57.5 31.8 231 68-334 326-570 (781)
273 2xe4_A Oligopeptidase B; hydro 98.1 0.0018 6.1E-08 60.0 25.3 168 154-334 262-460 (751)
274 4hw6_A Hypothetical protein, I 98.1 0.0034 1.2E-07 54.0 25.8 157 164-331 229-432 (433)
275 2p4o_A Hypothetical protein; p 98.1 0.0018 6E-08 52.9 22.3 185 125-335 45-244 (306)
276 3tc9_A Hypothetical hydrolase; 98.0 0.0055 1.9E-07 52.6 26.6 158 163-331 226-429 (430)
277 3amr_A 3-phytase; beta-propell 98.0 0.0013 4.5E-08 54.0 18.9 146 172-331 38-209 (355)
278 1k3i_A Galactose oxidase precu 98.0 0.00047 1.6E-08 62.9 17.7 94 225-321 409-530 (656)
279 2xzh_A Clathrin heavy chain 1; 98.0 0.0044 1.5E-07 50.1 28.2 235 62-334 75-334 (365)
280 3qqz_A Putative uncharacterize 98.0 0.0037 1.3E-07 49.2 22.7 213 45-288 22-252 (255)
281 3v65_B Low-density lipoprotein 98.0 0.0064 2.2E-07 51.4 26.8 217 52-309 118-337 (386)
282 3v9f_A Two-component system se 97.9 0.013 4.3E-07 54.7 30.2 229 68-334 376-613 (781)
283 2p9w_A MAL S 1 allergenic prot 97.9 0.0041 1.4E-07 50.6 20.1 160 166-332 16-215 (334)
284 4hw6_A Hypothetical protein, I 97.9 0.0022 7.7E-08 55.1 18.9 154 165-331 141-303 (433)
285 3v64_C Agrin; beta propeller, 97.8 0.011 3.7E-07 49.3 28.8 206 52-297 75-283 (349)
286 1n7d_A LDL receptor, low-densi 97.7 0.00037 1.3E-08 63.9 13.0 161 165-339 455-621 (699)
287 3m0c_C LDL receptor, low-densi 97.7 0.029 1E-06 52.0 29.7 238 67-339 397-639 (791)
288 3kya_A Putative phosphatase; s 97.7 0.023 7.8E-07 49.4 26.4 162 164-337 248-480 (496)
289 1bpo_A Protein (clathrin); cla 97.7 0.02 6.7E-07 48.4 28.0 233 62-334 74-333 (494)
290 3s94_A LRP-6, low-density lipo 97.5 0.049 1.7E-06 49.1 27.0 234 67-339 11-250 (619)
291 1n7d_A LDL receptor, low-densi 97.4 0.0053 1.8E-07 56.2 16.1 121 164-298 497-623 (699)
292 2be1_A Serine/threonine-protei 97.4 0.0067 2.3E-07 49.9 14.8 200 67-294 12-236 (339)
293 3pbp_A Nucleoporin NUP82; beta 97.3 0.0095 3.2E-07 50.1 14.7 117 164-285 67-208 (452)
294 3ei3_A DNA damage-binding prot 97.3 0.14 4.8E-06 49.7 34.9 274 23-333 531-874 (1158)
295 2vpj_A Kelch-like protein 12; 97.3 0.048 1.7E-06 44.1 20.7 146 173-334 112-280 (301)
296 3sov_A LRP-6, low-density lipo 97.3 0.054 1.8E-06 44.3 28.1 235 20-297 9-246 (318)
297 4a0p_A LRP6, LRP-6, low-densit 97.3 0.1 3.4E-06 47.2 30.6 233 67-339 8-244 (628)
298 2p9w_A MAL S 1 allergenic prot 97.3 0.055 1.9E-06 44.1 24.1 193 125-330 27-263 (334)
299 3kya_A Putative phosphatase; s 97.2 0.045 1.5E-06 47.6 18.2 160 164-331 140-340 (496)
300 2xn4_A Kelch-like protein 2; s 97.1 0.074 2.5E-06 43.0 21.1 146 173-334 108-278 (302)
301 3pbp_A Nucleoporin NUP82; beta 97.0 0.12 4.2E-06 43.6 19.9 145 173-327 31-207 (452)
302 3p5b_L Low density lipoprotein 97.0 0.13 4.6E-06 43.5 32.0 209 50-298 112-329 (400)
303 2xzh_A Clathrin heavy chain 1; 96.9 0.12 4E-06 42.0 26.6 108 167-289 71-189 (365)
304 3ii7_A Kelch-like protein 7; p 96.9 0.12 4E-06 41.9 22.3 145 173-334 101-274 (306)
305 2xbg_A YCF48-like protein; pho 96.8 0.15 5.1E-06 41.9 31.3 153 162-330 162-320 (327)
306 1xi4_A Clathrin heavy chain; a 96.8 0.25 8.5E-06 48.4 20.9 232 62-332 74-331 (1630)
307 3sre_A PON1, serum paraoxonase 96.8 0.18 6.2E-06 41.8 20.8 160 167-332 54-252 (355)
308 1ijq_A LDL receptor, low-densi 96.8 0.17 5.9E-06 41.3 31.5 233 19-297 5-246 (316)
309 2ism_A Putative oxidoreductase 96.7 0.22 7.6E-06 41.3 25.6 59 260-320 269-333 (352)
310 1zgk_A Kelch-like ECH-associat 96.6 0.2 6.9E-06 40.6 20.5 146 173-334 121-289 (308)
311 3m0c_C LDL receptor, low-densi 96.6 0.43 1.5E-05 44.3 30.4 207 51-297 425-640 (791)
312 1bpo_A Protein (clathrin); cla 96.6 0.28 9.6E-06 41.6 27.0 224 74-338 47-295 (494)
313 1tl2_A L10, protein (tachylect 96.6 0.16 5.5E-06 38.7 14.4 150 164-325 42-203 (236)
314 3a9g_A Putative uncharacterize 96.6 0.26 9E-06 40.9 28.1 62 259-320 259-330 (354)
315 2ism_A Putative oxidoreductase 96.4 0.27 9.2E-06 40.8 16.4 143 164-319 32-220 (352)
316 3sre_A PON1, serum paraoxonase 96.3 0.39 1.3E-05 39.8 24.1 200 73-297 81-308 (355)
317 4asc_A Kelch repeat and BTB do 96.3 0.36 1.2E-05 39.2 21.1 146 173-334 98-279 (315)
318 2vpj_A Kelch-like protein 12; 96.1 0.42 1.5E-05 38.4 16.8 146 173-334 62-233 (301)
319 3ei3_A DNA damage-binding prot 96.0 1.3 4.4E-05 43.2 33.1 132 186-329 809-952 (1158)
320 2be1_A Serine/threonine-protei 96.0 0.034 1.2E-06 45.7 8.7 111 228-339 11-137 (339)
321 3das_A Putative oxidoreductase 95.9 0.59 2E-05 38.6 17.5 147 163-319 32-219 (347)
322 3ii7_A Kelch-like protein 7; p 95.9 0.37 1.3E-05 38.9 14.6 146 173-334 55-227 (306)
323 2xn4_A Kelch-like protein 2; s 95.8 0.49 1.7E-05 38.1 15.0 145 173-334 61-231 (302)
324 2g8s_A Glucose/sorbosone dehyd 95.7 0.72 2.5E-05 38.2 16.5 149 164-318 19-214 (353)
325 4a0p_A LRP6, LRP-6, low-densit 95.7 1.1 3.9E-05 40.4 31.3 233 17-295 8-243 (628)
326 1xi4_A Clathrin heavy chain; a 95.4 1 3.5E-05 44.4 17.2 193 125-338 78-295 (1630)
327 2uvk_A YJHT; unknown function, 95.4 0.93 3.2E-05 37.4 18.5 55 281-338 286-348 (357)
328 3a9g_A Putative uncharacterize 95.2 0.24 8.2E-06 41.2 11.4 101 216-320 31-153 (354)
329 1zgk_A Kelch-like ECH-associat 94.9 0.66 2.2E-05 37.5 13.0 104 226-334 121-242 (308)
330 1cru_A Protein (soluble quinop 94.9 1.7 5.7E-05 37.5 20.8 109 164-277 28-162 (454)
331 1tl2_A L10, protein (tachylect 94.8 0.19 6.5E-06 38.3 8.5 105 216-328 43-159 (236)
332 2woz_A Kelch repeat and BTB do 94.8 1.3 4.6E-05 35.8 20.1 145 173-334 109-289 (318)
333 4asc_A Kelch repeat and BTB do 94.7 1.3 4.6E-05 35.7 14.4 104 226-334 98-223 (315)
334 3s94_A LRP-6, low-density lipo 93.8 3.6 0.00012 37.1 29.8 157 163-333 392-552 (619)
335 3no0_A DNA gyrase subunit A; D 93.6 2.2 7.6E-05 33.9 17.3 160 16-193 37-196 (276)
336 2g8s_A Glucose/sorbosone dehyd 93.5 2.8 9.4E-05 34.7 26.4 65 259-323 271-345 (353)
337 2xbg_A YCF48-like protein; pho 93.5 2.6 8.9E-05 34.3 27.4 146 164-325 123-272 (327)
338 3s25_A Hypothetical 7-bladed b 93.4 2.6 8.9E-05 34.0 15.3 137 169-332 59-216 (302)
339 2zwa_A Leucine carboxyl methyl 93.3 4.8 0.00016 36.8 19.3 116 172-293 499-639 (695)
340 2woz_A Kelch repeat and BTB do 93.3 2.7 9.3E-05 33.9 15.2 105 226-334 109-233 (318)
341 1zi0_A DNA gyrase subunit A; b 93.1 3 0.0001 33.7 23.8 254 64-332 2-277 (307)
342 1wp5_A Topoisomerase IV; broke 93.0 3.1 0.00011 33.9 23.3 255 17-288 8-276 (323)
343 3sbq_A Nitrous-oxide reductase 92.5 5.3 0.00018 35.3 23.4 72 260-333 324-409 (638)
344 1suu_A DNA gyrase subunit A; t 91.6 4.7 0.00016 32.7 23.2 210 65-288 8-230 (312)
345 2zwa_A Leucine carboxyl methyl 91.5 8.2 0.00028 35.3 16.0 150 173-334 451-637 (695)
346 3uc1_A DNA gyrase subunit A; D 91.0 5.5 0.00019 32.5 21.5 251 66-332 4-279 (327)
347 3ott_A Two-component system se 90.5 11 0.00037 34.9 29.7 153 164-334 104-262 (758)
348 2uvk_A YJHT; unknown function, 90.3 6.6 0.00023 32.2 19.7 58 238-297 286-350 (357)
349 4gq2_M Nucleoporin NUP120; bet 89.9 3.2 0.00011 39.6 11.6 38 302-339 236-273 (950)
350 3uc1_A DNA gyrase subunit A; D 89.5 7.6 0.00026 31.7 24.5 282 16-323 5-321 (327)
351 1zi0_A DNA gyrase subunit A; b 89.1 7.7 0.00026 31.3 22.9 255 17-288 6-276 (307)
352 3sbq_A Nitrous-oxide reductase 88.9 6.5 0.00022 34.7 11.6 102 214-320 323-453 (638)
353 3zwu_A Alkaline phosphatase PH 87.7 2.3 7.7E-05 37.9 8.4 58 262-319 479-548 (592)
354 2wg3_C Hedgehog-interacting pr 87.6 13 0.00045 32.0 13.7 106 216-323 16-160 (463)
355 3das_A Putative oxidoreductase 87.4 11 0.00038 31.0 30.3 249 52-320 34-326 (347)
356 3no0_A DNA gyrase subunit A; D 86.5 11 0.00036 29.9 24.3 206 103-332 23-246 (276)
357 4fhn_B Nucleoporin NUP120; pro 86.3 3.2 0.00011 40.5 9.4 38 302-339 238-275 (1139)
358 1wp5_A Topoisomerase IV; broke 85.7 13 0.00045 30.2 23.0 251 64-332 4-277 (323)
359 3ott_A Two-component system se 83.8 27 0.00091 32.2 30.5 162 163-335 324-505 (758)
360 4fhn_B Nucleoporin NUP120; pro 83.3 36 0.0012 33.3 16.9 37 261-297 240-276 (1139)
361 1suu_A DNA gyrase subunit A; t 83.1 17 0.00057 29.4 24.4 214 16-246 10-231 (312)
362 3l6v_A GYRA, DNA gyrase subuni 82.2 21 0.0007 29.7 24.5 164 16-193 9-180 (370)
363 4a9v_A PHOX; hydrolase, beta-p 82.2 8.6 0.0003 34.0 9.3 60 260-319 477-548 (592)
364 1cru_A Protein (soluble quinop 81.7 24 0.00083 30.2 30.7 68 270-338 369-448 (454)
365 3l6v_A GYRA, DNA gyrase subuni 80.3 24 0.00083 29.3 25.7 247 63-330 5-314 (370)
366 3f7f_A Nucleoporin NUP120; nuc 77.1 4 0.00014 37.1 5.8 35 303-339 223-257 (729)
367 3qhy_B Beta-lactamase inhibito 76.2 27 0.00092 27.6 17.1 144 164-332 103-246 (282)
368 3s25_A Hypothetical 7-bladed b 75.6 29 0.001 27.8 13.6 99 224-334 61-178 (302)
369 1zvt_A Topoisomerase IV subuni 71.3 34 0.0012 26.6 14.5 150 67-246 4-163 (256)
370 3q6k_A 43.2 kDa salivary prote 69.4 49 0.0017 27.6 16.7 111 163-276 220-341 (381)
371 3f7f_A Nucleoporin NUP120; nuc 66.8 67 0.0023 29.4 11.0 37 215-256 223-259 (729)
372 4gq2_M Nucleoporin NUP120; bet 60.2 1.2E+02 0.0041 29.0 24.1 38 260-297 237-274 (950)
373 2zux_A YESW protein; beta-prop 53.8 1.2E+02 0.0041 26.9 18.7 148 185-340 230-408 (591)
374 3zwu_A Alkaline phosphatase PH 51.9 65 0.0022 28.8 8.4 59 216-277 478-549 (592)
375 1zvt_A Topoisomerase IV subuni 49.8 89 0.003 24.2 18.7 155 17-193 5-163 (256)
376 4a9v_A PHOX; hydrolase, beta-p 49.4 1E+02 0.0035 27.4 9.0 62 214-278 476-550 (592)
377 3kci_A Probable E3 ubiquitin-p 48.5 1.2E+02 0.004 25.2 21.7 201 125-331 64-292 (389)
378 3al9_A Plexin-A2; beta-propell 38.3 1.1E+02 0.0039 26.9 7.7 68 260-327 401-476 (539)
379 2zuy_A YESX protein; beta-prop 38.0 2.2E+02 0.0075 25.4 18.7 53 288-340 354-412 (620)
380 1q47_A Semaphorin 3A; beta pro 37.5 1.9E+02 0.0065 25.1 8.9 68 260-327 405-487 (495)
381 3qhy_B Beta-lactamase inhibito 36.1 1.6E+02 0.0053 23.1 18.2 205 23-289 41-246 (282)
382 3q6k_A 43.2 kDa salivary prote 33.6 2.1E+02 0.0071 23.8 22.0 154 164-320 153-342 (381)
383 3al9_A Plexin-A2; beta-propell 33.2 1.3E+02 0.0045 26.4 7.3 69 216-284 402-476 (539)
384 4hvt_A Ritya.17583.B, post-pro 29.1 3.4E+02 0.012 24.9 23.3 96 235-331 318-429 (711)
385 1zvu_A Topoisomerase IV subuni 28.5 3.5E+02 0.012 24.8 12.2 83 160-246 551-633 (716)
386 1q47_A Semaphorin 3A; beta pro 28.2 1.6E+02 0.0054 25.6 6.9 64 125-188 423-487 (495)
387 3ol2_B Plexin-B1; beta-propell 27.6 2.8E+02 0.0095 24.3 8.3 68 260-327 388-461 (528)
388 1olz_A Semaphorin 4D; developm 25.3 3E+02 0.01 25.0 8.4 57 228-284 416-477 (663)
389 4gz8_A Semaphorin-3A; multi-do 23.8 2.8E+02 0.0096 25.2 7.8 28 161-188 468-495 (667)
390 2wg3_C Hedgehog-interacting pr 23.6 3.5E+02 0.012 23.2 29.4 70 250-320 266-354 (463)
391 3mez_B Mannose-specific lectin 23.5 1.6E+02 0.0054 19.2 8.5 15 315-329 91-105 (113)
392 1ic9_A TH10AOX; three stranded 22.5 43 0.0015 15.0 1.2 11 6-16 11-21 (29)
393 1sr4_A CDT A, cytolethal diste 22.4 2.5E+02 0.0084 21.0 8.2 94 236-338 68-165 (206)
394 3nvq_A Semaphorin-7A; beta-pro 22.4 3.5E+02 0.012 24.2 7.9 57 271-327 381-444 (590)
395 3ol2_B Plexin-B1; beta-propell 21.6 4.1E+02 0.014 23.3 8.2 59 125-188 402-461 (528)
396 4gz8_A Semaphorin-3A; multi-do 20.2 4.1E+02 0.014 24.2 8.1 57 228-284 430-495 (667)
No 1
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.8e-44 Score=300.35 Aligned_cols=272 Identities=17% Similarity=0.128 Sum_probs=236.2
Q ss_pred ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 94 (341)
..+++++.||.+++|++... ...+...+.+|...+.+++++++.. ++++++.|++|++||+.+++.+..+..+
T Consensus 49 ~~l~tgs~D~~v~vW~~~~~---~~~~~~~l~gh~~~v~~~~~~~~~~----~l~s~s~D~~i~lWd~~~~~~~~~~~~~ 121 (321)
T 3ow8_A 49 ETVVTGSLDDLVKVWKWRDE---RLDLQWSLEGHQLGVVSVDISHTLP----IAASSSLDAHIRLWDLENGKQIKSIDAG 121 (321)
T ss_dssp CEEEEEETTSCEEEEEEETT---EEEEEEEECCCSSCEEEEEECSSSS----EEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred CEEEEEcCCCCEEEEECCCC---CeeeeeeeccCCCCEEEEEECCCCC----EEEEEeCCCcEEEEECCCCCEEEEEeCC
Confidence 46899999999999999875 1123446788999999999887665 8999999999999999999888877653
Q ss_pred CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC
Q 019405 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (341)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~ 174 (341)
...+.++.+.+... .+++++.+|.+.+|++.... ...... .+...+.+++|+|++
T Consensus 122 --------~~~~~~~~~spdg~--------~l~~g~~dg~v~i~~~~~~~--------~~~~~~-~~~~~v~~~~~spdg 176 (321)
T 3ow8_A 122 --------PVDAWTLAFSPDSQ--------YLATGTHVGKVNIFGVESGK--------KEYSLD-TRGKFILSIAYSPDG 176 (321)
T ss_dssp --------TTCCCCEEECTTSS--------EEEEECTTSEEEEEETTTCS--------EEEEEE-CSSSCEEEEEECTTS
T ss_pred --------CccEEEEEECCCCC--------EEEEEcCCCcEEEEEcCCCc--------eeEEec-CCCceEEEEEECCCC
Confidence 34566677666555 89999999999999986433 333333 356689999999999
Q ss_pred CEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEE
Q 019405 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF 254 (341)
Q Consensus 175 ~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 254 (341)
++|++++.|+.|++||+++++.+..+..+. ..|.+++| +|++++|++++.|++|++||+++.+. +..+
T Consensus 177 ~~lasg~~dg~i~iwd~~~~~~~~~~~~h~---------~~v~~l~~--spd~~~l~s~s~dg~i~iwd~~~~~~-~~~~ 244 (321)
T 3ow8_A 177 KYLASGAIDGIINIFDIATGKLLHTLEGHA---------MPIRSLTF--SPDSQLLVTASDDGYIKIYDVQHANL-AGTL 244 (321)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEEEECCCS---------SCCCEEEE--CTTSCEEEEECTTSCEEEEETTTCCE-EEEE
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEEEcccC---------CceeEEEE--cCCCCEEEEEcCCCeEEEEECCCcce-eEEE
Confidence 999999999999999999999988887654 56999999 89999999999999999999998664 7888
Q ss_pred EecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcC
Q 019405 255 DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331 (341)
Q Consensus 255 ~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~ 331 (341)
.+|...|.+++|+|++.+|++++.|+.|++||+++++++..+.+| ...|++++|+|++++|++++.|+.|++||..
T Consensus 245 ~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h-~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 245 SGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDH-QDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCC-CCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 999999999999999999999999999999999999999999998 8999999999999999999999999999974
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.3e-44 Score=310.11 Aligned_cols=269 Identities=11% Similarity=0.145 Sum_probs=236.7
Q ss_pred eeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccC
Q 019405 16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAG 95 (341)
Q Consensus 16 ~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 95 (341)
.+++++.||.|++|++... +....+.+|...|.+++|++++. +|++|+.|++|+|||+.+++++..+..
T Consensus 122 ~l~s~s~Dg~i~vwd~~~~-----~~~~~l~~h~~~V~~v~~~~~~~----~l~sgs~D~~i~iwd~~~~~~~~~~~~-- 190 (410)
T 1vyh_C 122 VMVSASEDATIKVWDYETG-----DFERTLKGHTDSVQDISFDHSGK----LLASCSADMTIKLWDFQGFECIRTMHG-- 190 (410)
T ss_dssp EEEEEESSSCEEEEETTTC-----CCCEEECCCSSCEEEEEECTTSS----EEEEEETTSCCCEEETTSSCEEECCCC--
T ss_pred EEEEEeCCCeEEEEECCCC-----cEEEEEeccCCcEEEEEEcCCCC----EEEEEeCCCeEEEEeCCCCceeEEEcC--
Confidence 5788999999999998876 56668889999999999987655 899999999999999998888777765
Q ss_pred CCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCC
Q 019405 96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK 175 (341)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~ 175 (341)
|...+.++.+.+... .+++++.|+.+++|++.... .+..+. .|...|.++.++|++.
T Consensus 191 ------h~~~V~~v~~~p~~~--------~l~s~s~D~~i~~wd~~~~~--------~~~~~~-~h~~~v~~~~~~~~g~ 247 (410)
T 1vyh_C 191 ------HDHNVSSVSIMPNGD--------HIVSASRDKTIKMWEVQTGY--------CVKTFT-GHREWVRMVRPNQDGT 247 (410)
T ss_dssp ------CSSCEEEEEECSSSS--------EEEEEETTSEEEEEETTTCC--------EEEEEE-CCSSCEEEEEECTTSS
T ss_pred ------CCCCEEEEEEeCCCC--------EEEEEeCCCeEEEEECCCCc--------EEEEEe-CCCccEEEEEECCCCC
Confidence 457788888877666 89999999999999986433 455554 4677899999999999
Q ss_pred EEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCC--------------------CCEEEEEeC
Q 019405 176 FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD--------------------HRKFVAGTN 235 (341)
Q Consensus 176 ~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------------------~~~l~~~~~ 235 (341)
++++|+.|+.|++||+.+++....+..+. ..|.+++| +|+ +.+|++|+.
T Consensus 248 ~l~s~s~D~~v~vwd~~~~~~~~~~~~h~---------~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~ 316 (410)
T 1vyh_C 248 LIASCSNDQTVRVWVVATKECKAELREHR---------HVVECISW--APESSYSSISEATGSETKKSGKPGPFLLSGSR 316 (410)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCCS---------SCEEEEEE--CCSCGGGGGGGCCSCC-------CCEEEEEET
T ss_pred EEEEEcCCCeEEEEECCCCceeeEecCCC---------ceEEEEEE--cCcccccchhhhccccccccCCCCCEEEEEeC
Confidence 99999999999999999998888877654 56999999 554 678999999
Q ss_pred CCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCE
Q 019405 236 DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPI 315 (341)
Q Consensus 236 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 315 (341)
|++|++||++++.. +..+.+|...|++++|+|++++|++|+.|+.|++||+.+++++..+.+| ...|++++|+|++++
T Consensus 317 D~~i~iwd~~~~~~-~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~ 394 (410)
T 1vyh_C 317 DKTIKMWDVSTGMC-LMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH-EHFVTSLDFHKTAPY 394 (410)
T ss_dssp TSEEEEEETTTTEE-EEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECC-SSCEEEEEECSSSSC
T ss_pred CCeEEEEECCCCce-EEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCC-CCcEEEEEEcCCCCE
Confidence 99999999998764 8889999999999999999999999999999999999999999999998 899999999999999
Q ss_pred EEEEeCCCcEEEEEcC
Q 019405 316 IASCGLDSYLRFWDIK 331 (341)
Q Consensus 316 l~s~~~dg~v~iwd~~ 331 (341)
|++++.|+.|++|+++
T Consensus 395 l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 395 VVTGSVDQTVKVWECR 410 (410)
T ss_dssp EEEEETTSEEEEEC--
T ss_pred EEEEeCCCcEEEEeCC
Confidence 9999999999999864
No 3
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.3e-42 Score=288.35 Aligned_cols=258 Identities=15% Similarity=0.185 Sum_probs=221.0
Q ss_pred eeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccc
Q 019405 41 VVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS 120 (341)
Q Consensus 41 ~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (341)
+..+|.+|...|.+++|++++. +|++|+.||+|+|||+++++.+..+.. +..++.++.+.+...
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~~----~l~s~~~dg~v~lWd~~~~~~~~~~~~--------~~~~v~~~~~~~~~~---- 68 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTEP----WVLTTLYSGRVELWNYETQVEVRSIQV--------TETPVRAGKFIARKN---- 68 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSSS----EEEEEETTSEEEEEETTTTEEEEEEEC--------CSSCEEEEEEEGGGT----
T ss_pred eEEeecCCCCceEEEEECCCCC----EEEEEcCCCcEEEEECCCCceeEEeec--------cCCcEEEEEEeCCCC----
Confidence 4457888999999999998776 899999999999999999988887776 346788888777666
Q ss_pred cccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCc-eeee
Q 019405 121 SRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE-KIWT 199 (341)
Q Consensus 121 ~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~-~~~~ 199 (341)
.+++++.|+.+++|++.... .+..+. .|...|.+++|+|++++|++|+.|++|++||++++. ....
T Consensus 69 ----~l~s~s~d~~i~vwd~~~~~--------~~~~~~-~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~ 135 (304)
T 2ynn_A 69 ----WIIVGSDDFRIRVFNYNTGE--------KVVDFE-AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT 135 (304)
T ss_dssp ----EEEEEETTSEEEEEETTTCC--------EEEEEE-CCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEE
T ss_pred ----EEEEECCCCEEEEEECCCCc--------EEEEEe-CCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhh
Confidence 99999999999999986433 455554 467899999999999999999999999999998774 3444
Q ss_pred cCCCCCCccCccCCeeeeEEEEEecC-CCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcC--CCceEEEE
Q 019405 200 AKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEP--DSFNIYIG 276 (341)
Q Consensus 200 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~g 276 (341)
+..|. ..|.+++| +| ++.+|++|+.|++|++||++...........|...+..+.|+| ++.+|++|
T Consensus 136 ~~~h~---------~~v~~v~~--~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~ 204 (304)
T 2ynn_A 136 FEGHE---------HFVMCVAF--NPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITA 204 (304)
T ss_dssp ECCCC---------SCEEEEEE--CTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEE
T ss_pred hcccC---------CcEEEEEE--CCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEE
Confidence 55543 66999999 77 6789999999999999999876653333445667899999987 67899999
Q ss_pred eCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 277 NGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 277 ~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
+.|+.|++||+++++++..+.+| ...|.+++|+|++++|++++.||.|++||++++++++++
T Consensus 205 s~D~~i~iWd~~~~~~~~~~~~h-~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~ 266 (304)
T 2ynn_A 205 SDDLTIKIWDYQTKSCVATLEGH-MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266 (304)
T ss_dssp ETTSEEEEEETTTTEEEEEEECC-SSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred cCCCeEEEEeCCCCccceeeCCC-CCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeec
Confidence 99999999999999999999998 899999999999999999999999999999999988765
No 4
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.1e-42 Score=290.64 Aligned_cols=262 Identities=15% Similarity=0.244 Sum_probs=222.5
Q ss_pred eeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchh--eeeccCCCCCCCCCCceeeEeeeeccccc
Q 019405 41 VVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRV--AISNAGDSGAQPEDDGIVGLHLFKRQREE 118 (341)
Q Consensus 41 ~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (341)
+.....+|...|.+++|+++..+++++|++|+.|++|+||++.+++... .+.+ |...+.++.+.+...
T Consensus 24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~g--------h~~~v~~~~~~~~~~-- 93 (321)
T 3ow8_A 24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEG--------HQLGVVSVDISHTLP-- 93 (321)
T ss_dssp EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECC--------CSSCEEEEEECSSSS--
T ss_pred eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeecc--------CCCCEEEEEECCCCC--
Confidence 4456778999999999999887778899999999999999997665432 2333 567788888776655
Q ss_pred cccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceee
Q 019405 119 SSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIW 198 (341)
Q Consensus 119 ~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~ 198 (341)
.+++++.|+.+++|++.... .+..+.. +...+.+++|+|++++|++++.|+.|++||+++++...
T Consensus 94 ------~l~s~s~D~~i~lWd~~~~~--------~~~~~~~-~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~ 158 (321)
T 3ow8_A 94 ------IAASSSLDAHIRLWDLENGK--------QIKSIDA-GPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEY 158 (321)
T ss_dssp ------EEEEEETTSEEEEEETTTTE--------EEEEEEC-CTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEE
T ss_pred ------EEEEEeCCCcEEEEECCCCC--------EEEEEeC-CCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeE
Confidence 89999999999999986433 4444443 45678899999999999999999999999999998887
Q ss_pred ecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeC
Q 019405 199 TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG 278 (341)
Q Consensus 199 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~ 278 (341)
.+..+. ..+.+++| +|++++|++++.|+.|++||+++++ .+..+.+|..+|.+++|+|++++|++|+.
T Consensus 159 ~~~~~~---------~~v~~~~~--spdg~~lasg~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~spd~~~l~s~s~ 226 (321)
T 3ow8_A 159 SLDTRG---------KFILSIAY--SPDGKYLASGAIDGIINIFDIATGK-LLHTLEGHAMPIRSLTFSPDSQLLVTASD 226 (321)
T ss_dssp EEECSS---------SCEEEEEE--CTTSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSCCCEEEECTTSCEEEEECT
T ss_pred EecCCC---------ceEEEEEE--CCCCCEEEEEcCCCeEEEEECCCCc-EEEEEcccCCceeEEEEcCCCCEEEEEcC
Confidence 776543 55899999 8999999999999999999999876 48889999999999999999999999999
Q ss_pred CCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeeec
Q 019405 279 SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVC 340 (341)
Q Consensus 279 dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 340 (341)
|+.|++||+++++++..+.+| ...|.+++|+|++++|++++.|+.|++||+++++++.+++
T Consensus 227 dg~i~iwd~~~~~~~~~~~~h-~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~ 287 (321)
T 3ow8_A 227 DGYIKIYDVQHANLAGTLSGH-ASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFF 287 (321)
T ss_dssp TSCEEEEETTTCCEEEEECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred CCeEEEEECCCcceeEEEcCC-CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEc
Confidence 999999999999999999998 8999999999999999999999999999999999988764
No 5
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.1e-41 Score=287.32 Aligned_cols=267 Identities=13% Similarity=0.190 Sum_probs=225.4
Q ss_pred ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcc----hhe
Q 019405 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL----RVA 90 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~----~~~ 90 (341)
-.+++++.||.|++|++... +.+..+..|...+.+++|++++. +|++|+.|+.|++|++.+++. ...
T Consensus 68 ~~l~s~s~Dg~v~iWd~~~~-----~~~~~~~~~~~~v~~~~~s~~~~----~l~s~~~d~~v~iw~~~~~~~~~~~~~~ 138 (340)
T 1got_B 68 RLLLSASQDGKLIIWDSYTT-----NKVHAIPLRSSWVMTCAYAPSGN----YVACGGLDNICSIYNLKTREGNVRVSRE 138 (340)
T ss_dssp SEEEEEETTTEEEEEETTTC-----CEEEEEECSSSCEEEEEECTTSS----EEEEEETTCEEEEEETTTCSBSCEEEEE
T ss_pred CEEEEEeCCCcEEEEECCCC-----CcceEeecCCccEEEEEECCCCC----EEEEEeCCCeEEEEECccCCCcceeEEE
Confidence 45788999999999998776 56667778999999999987765 899999999999999987542 223
Q ss_pred eeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEe
Q 019405 91 ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV 170 (341)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~ 170 (341)
+.. |.+.+.++.+.+ .. .+++++.|+.+++|++.... .+..+. .|...|.+++|
T Consensus 139 ~~~--------h~~~v~~~~~~~-~~--------~l~s~s~d~~i~~wd~~~~~--------~~~~~~-~h~~~v~~~~~ 192 (340)
T 1got_B 139 LAG--------HTGYLSCCRFLD-DN--------QIVTSSGDTTCALWDIETGQ--------QTTTFT-GHTGDVMSLSL 192 (340)
T ss_dssp EEC--------CSSCEEEEEEEE-TT--------EEEEEETTSCEEEEETTTTE--------EEEEEC-CCSSCEEEEEE
T ss_pred ecC--------CCccEEEEEECC-CC--------cEEEEECCCcEEEEECCCCc--------EEEEEc-CCCCceEEEEE
Confidence 333 446677776643 33 78999999999999986433 344443 46788999999
Q ss_pred cCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCce
Q 019405 171 DISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP 250 (341)
Q Consensus 171 ~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 250 (341)
+|+++++++|+.|+.|++||+++++....+..+. ..|.+++| +|++++|++++.|++|++||++..+.
T Consensus 193 ~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~---------~~v~~v~~--~p~~~~l~s~s~d~~v~iwd~~~~~~- 260 (340)
T 1got_B 193 APDTRLFVSGACDASAKLWDVREGMCRQTFTGHE---------SDINAICF--FPNGNAFATGSDDATCRLFDLRADQE- 260 (340)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCSEEEEECCCS---------SCEEEEEE--CTTSSEEEEEETTSCEEEEETTTTEE-
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCc---------CCEEEEEE--cCCCCEEEEEcCCCcEEEEECCCCcE-
Confidence 9999999999999999999999998888887654 56999999 89999999999999999999998653
Q ss_pred eEEEEe--cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEE
Q 019405 251 VMSFDF--RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFW 328 (341)
Q Consensus 251 ~~~~~~--~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iw 328 (341)
+..+.. +...|.+++|+|++++|++|+.|+.|++||+.+++.+..+.+| .+.|.+++|+|++.+|++++.|+.|++|
T Consensus 261 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h-~~~v~~~~~s~dg~~l~s~s~D~~i~iW 339 (340)
T 1got_B 261 LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH-DNRVSCLGVTDDGMAVATGSWDSFLKIW 339 (340)
T ss_dssp EEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECC-SSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred EEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecC-CCcEEEEEEcCCCCEEEEEcCCccEEec
Confidence 555542 2247999999999999999999999999999999999999998 8999999999999999999999999999
Q ss_pred E
Q 019405 329 D 329 (341)
Q Consensus 329 d 329 (341)
|
T Consensus 340 d 340 (340)
T 1got_B 340 N 340 (340)
T ss_dssp C
T ss_pred C
Confidence 7
No 6
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.5e-41 Score=281.88 Aligned_cols=274 Identities=14% Similarity=0.083 Sum_probs=230.7
Q ss_pred ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 94 (341)
-.+++++.||.+++|++... +.+..+..|..++.+++|++++. +|++|+.|++|++||+.+++.+..+..
T Consensus 26 ~~l~s~~~dg~v~lWd~~~~-----~~~~~~~~~~~~v~~~~~~~~~~----~l~s~s~d~~i~vwd~~~~~~~~~~~~- 95 (304)
T 2ynn_A 26 PWVLTTLYSGRVELWNYETQ-----VEVRSIQVTETPVRAGKFIARKN----WIIVGSDDFRIRVFNYNTGEKVVDFEA- 95 (304)
T ss_dssp SEEEEEETTSEEEEEETTTT-----EEEEEEECCSSCEEEEEEEGGGT----EEEEEETTSEEEEEETTTCCEEEEEEC-
T ss_pred CEEEEEcCCCcEEEEECCCC-----ceeEEeeccCCcEEEEEEeCCCC----EEEEECCCCEEEEEECCCCcEEEEEeC-
Confidence 35788999999999998876 56677888999999999998877 899999999999999999998888876
Q ss_pred CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecC-C
Q 019405 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-S 173 (341)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~-~ 173 (341)
|.+.+.++.+.+... .+++++.|+.+++|++..... ....+ ..|...|.+++|+| +
T Consensus 96 -------h~~~v~~~~~~~~~~--------~l~sgs~D~~v~lWd~~~~~~-------~~~~~-~~h~~~v~~v~~~p~~ 152 (304)
T 2ynn_A 96 -------HPDYIRSIAVHPTKP--------YVLSGSDDLTVKLWNWENNWA-------LEQTF-EGHEHFVMCVAFNPKD 152 (304)
T ss_dssp -------CSSCEEEEEECSSSS--------EEEEEETTSCEEEEEGGGTTE-------EEEEE-CCCCSCEEEEEECTTC
T ss_pred -------CCCcEEEEEEcCCCC--------EEEEECCCCeEEEEECCCCcc-------hhhhh-cccCCcEEEEEECCCC
Confidence 457788888877666 899999999999999864321 22233 34678899999999 6
Q ss_pred CCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEE
Q 019405 174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS 253 (341)
Q Consensus 174 ~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 253 (341)
+.+|++|+.|++|++||++++.....+.... ...+..+.|.|.+++.+|++++.|++|++||+++++. +..
T Consensus 153 ~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~-~~~ 223 (304)
T 2ynn_A 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ--------ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC-VAT 223 (304)
T ss_dssp TTEEEEEETTSEEEEEETTCSSCSEEEECCC--------TTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEE-EEE
T ss_pred CCEEEEEeCCCeEEEEECCCCCccceeccCC--------cCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCcc-cee
Confidence 7899999999999999998876655544322 2458888996566888999999999999999998664 889
Q ss_pred EEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCC--EEEEEeCCCcEEEEEcC
Q 019405 254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP--IIASCGLDSYLRFWDIK 331 (341)
Q Consensus 254 ~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~s~~~dg~v~iwd~~ 331 (341)
+.+|...|.+++|+|++++|++|+.||.|++||+++++++..+..| ...+++++|+|++. ++++++.| .+.+|++.
T Consensus 224 ~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~asg~~~-g~~~~~~~ 301 (304)
T 2ynn_A 224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG-LERSWCIATHPTGRKNYIASGFDN-GFTVLSLG 301 (304)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCS-SSSEEEEEECTTCGGGCEEEEETT-EEEEEECC
T ss_pred eCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCC-CccEEEEEECCCCCceEEEEecCC-ceEEEEec
Confidence 9999999999999999999999999999999999999999999987 88999999999885 46776655 57888876
Q ss_pred C
Q 019405 332 T 332 (341)
Q Consensus 332 ~ 332 (341)
+
T Consensus 302 ~ 302 (304)
T 2ynn_A 302 N 302 (304)
T ss_dssp -
T ss_pred c
Confidence 4
No 7
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=7.7e-42 Score=287.75 Aligned_cols=249 Identities=13% Similarity=0.116 Sum_probs=203.7
Q ss_pred CCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeE
Q 019405 48 PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL 127 (341)
Q Consensus 48 ~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 127 (341)
++..|.+++|+++.. |++|+.||+|+|||+++++.+...... ...|.+.+.++.+.+... .|+
T Consensus 81 ~~~~v~~~~~s~d~~-----l~~~s~dg~v~lWd~~~~~~~~~~~~~----~~~H~~~V~~v~~spdg~--------~l~ 143 (344)
T 4gqb_B 81 TEAGVADLTWVGERG-----ILVASDSGAVELWELDENETLIVSKFC----KYEHDDIVSTVSVLSSGT--------QAV 143 (344)
T ss_dssp ESSCEEEEEEETTTE-----EEEEETTSEEEEEEECTTSSCEEEEEE----EECCSSCEEEEEECTTSS--------EEE
T ss_pred cCCCEEEEEEeCCCe-----EEEEECCCEEEEEeccCCCceeEeecc----ccCCCCCEEEEEECCCCC--------EEE
Confidence 567799999998744 999999999999999998876554421 013568899998877666 999
Q ss_pred EEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC-CEEEEeeCCCeEEEEECCCCceeeecCCCCCC
Q 019405 128 TCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKN 206 (341)
Q Consensus 128 ~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~ 206 (341)
+++.|+.+++|++.... .+..+. .|...|.+++|++++ .++++++.|++|++||+++++....+....
T Consensus 144 sgs~d~~i~iwd~~~~~--------~~~~~~-~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-- 212 (344)
T 4gqb_B 144 SGSKDICIKVWDLAQQV--------VLSSYR-AHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSA-- 212 (344)
T ss_dssp EEETTSCEEEEETTTTE--------EEEEEC-CCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-----
T ss_pred EEeCCCeEEEEECCCCc--------EEEEEc-CcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecce--
Confidence 99999999999986443 444444 477899999999987 478999999999999999998887765433
Q ss_pred ccCccCCeeeeEEEEEecC-CCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCC-ceEEEEeCCCCEEE
Q 019405 207 SLGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLAS 284 (341)
Q Consensus 207 ~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~i 284 (341)
+...+.+++| +| ++++|++|+.|++|++||+++++. +..+.+|...|++++|+|++ ++|++|+.|+.|+|
T Consensus 213 -----~~~~~~~~~~--~p~~~~~l~sg~~dg~v~~wd~~~~~~-~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~v 284 (344)
T 4gqb_B 213 -----PGYLPTSLAW--HPQQSEVFVFGDENGTVSLVDTKSTSC-VLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAV 284 (344)
T ss_dssp ------CCCEEEEEE--CSSCTTEEEEEETTSEEEEEESCC--C-CEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEE
T ss_pred -----eeccceeeee--cCCCCcceEEeccCCcEEEEECCCCcE-EEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEE
Confidence 1245889999 55 567889999999999999998764 88999999999999999998 67999999999999
Q ss_pred EECCCCeEEeEEeccccCceeEEEecCCCC-EEEEEeCCCcEEEEEcCCCc
Q 019405 285 VDIRTGKLLGCFIGKCSGSIRSIARHPTLP-IIASCGLDSYLRFWDIKTRQ 334 (341)
Q Consensus 285 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~ 334 (341)
||+++++++ .+.+| .+.|++++|+|+++ +|++++.|++|++|++.+..
T Consensus 285 wd~~~~~~~-~~~~H-~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 285 LDSSLSELF-RSQAH-RDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp ECTTCCEEE-EECCC-SSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred EECCCCcEE-EEcCC-CCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 999998765 56787 89999999999987 57799999999999998754
No 8
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.5e-41 Score=293.42 Aligned_cols=255 Identities=13% Similarity=0.226 Sum_probs=225.5
Q ss_pred eeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccc
Q 019405 43 ERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSR 122 (341)
Q Consensus 43 ~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (341)
..+.+|..+|++++|++++. +|++|+.||+|+|||+.+++....+.. |.+.+.++.+.+...
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~----~l~s~s~Dg~i~vwd~~~~~~~~~l~~--------h~~~V~~v~~~~~~~------ 163 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFS----VMVSASEDATIKVWDYETGDFERTLKG--------HTDSVQDISFDHSGK------ 163 (410)
T ss_dssp CEEECCSSCEEEEEECSSSS----EEEEEESSSCEEEEETTTCCCCEEECC--------CSSCEEEEEECTTSS------
T ss_pred EeecccCCcEEEEEEcCCCC----EEEEEeCCCeEEEEECCCCcEEEEEec--------cCCcEEEEEEcCCCC------
Confidence 35667999999999988766 899999999999999999998888876 457788888876555
Q ss_pred cceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCC
Q 019405 123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKP 202 (341)
Q Consensus 123 ~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~ 202 (341)
.+++++.|+.+++|++.... .++.+. .|...|.+++|+|+++++++++.|++|++||+++++.+..+..
T Consensus 164 --~l~sgs~D~~i~iwd~~~~~--------~~~~~~-~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~ 232 (410)
T 1vyh_C 164 --LLASCSADMTIKLWDFQGFE--------CIRTMH-GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTG 232 (410)
T ss_dssp --EEEEEETTSCCCEEETTSSC--------EEECCC-CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred --EEEEEeCCCeEEEEeCCCCc--------eeEEEc-CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeC
Confidence 99999999999999985432 334333 3677899999999999999999999999999999998888876
Q ss_pred CCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCC-------------
Q 019405 203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPD------------- 269 (341)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~------------- 269 (341)
+. .+|.++.| ++++.+|++++.|++|++||+++++. ...+..|...|.+++|+|+
T Consensus 233 h~---------~~v~~~~~--~~~g~~l~s~s~D~~v~vwd~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~ 300 (410)
T 1vyh_C 233 HR---------EWVRMVRP--NQDGTLIASCSNDQTVRVWVVATKEC-KAELREHRHVVECISWAPESSYSSISEATGSE 300 (410)
T ss_dssp CS---------SCEEEEEE--CTTSSEEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEEEEECCSCGGGGGGGCCSCC
T ss_pred CC---------ccEEEEEE--CCCCCEEEEEcCCCeEEEEECCCCce-eeEecCCCceEEEEEEcCcccccchhhhcccc
Confidence 54 66999999 89999999999999999999998764 7888899999999999996
Q ss_pred -------CceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 270 -------SFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 270 -------~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
+.+|++|+.|+.|++||+++++++..+.+| ...|++++|+|++++|++++.|+.|++||+.+++++.++
T Consensus 301 ~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h-~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~ 376 (410)
T 1vyh_C 301 TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH-DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL 376 (410)
T ss_dssp -------CCEEEEEETTSEEEEEETTTTEEEEEEECC-SSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE
T ss_pred ccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECC-CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEE
Confidence 668999999999999999999999999998 899999999999999999999999999999999887765
No 9
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2e-40 Score=277.07 Aligned_cols=275 Identities=9% Similarity=0.105 Sum_probs=228.7
Q ss_pred ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 94 (341)
..+++++.||.+++|++..........+..+.+|...+.+++|++++. +|++|+.|++|+|||+.+++.+..+..
T Consensus 31 ~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~----~l~s~s~D~~v~~wd~~~~~~~~~~~~- 105 (319)
T 3frx_A 31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA----YALSASWDKTLRLWDVATGETYQRFVG- 105 (319)
T ss_dssp TEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS----EEEEEETTSEEEEEETTTTEEEEEEEC-
T ss_pred cEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC----EEEEEeCCCEEEEEECCCCCeeEEEcc-
Confidence 458899999999999998642222245667889999999999987766 899999999999999999998888876
Q ss_pred CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCC-
Q 019405 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS- 173 (341)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~- 173 (341)
|...+.++.+.+... .+++++.|+.+++|++.. ..+..+. .|...|.++.+.|.
T Consensus 106 -------h~~~v~~~~~~~~~~--------~l~s~s~D~~i~vwd~~~---------~~~~~~~-~h~~~v~~~~~~~~~ 160 (319)
T 3frx_A 106 -------HKSDVMSVDIDKKAS--------MIISGSRDKTIKVWTIKG---------QCLATLL-GHNDWVSQVRVVPNE 160 (319)
T ss_dssp -------CSSCEEEEEECTTSC--------EEEEEETTSCEEEEETTS---------CEEEEEC-CCSSCEEEEEECCC-
T ss_pred -------CCCcEEEEEEcCCCC--------EEEEEeCCCeEEEEECCC---------CeEEEEe-ccCCcEEEEEEccCC
Confidence 457788888776555 899999999999999742 2333333 46778999999884
Q ss_pred -----CCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCC
Q 019405 174 -----EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR 248 (341)
Q Consensus 174 -----~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 248 (341)
+..+++++.|+.|++||+++.+....+..|. ..|.+++| +|++++|++++.|+.|++||+.+.+
T Consensus 161 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~---------~~v~~~~~--sp~g~~l~s~~~dg~i~iwd~~~~~ 229 (319)
T 3frx_A 161 KADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHN---------SNINTLTA--SPDGTLIASAGKDGEIMLWNLAAKK 229 (319)
T ss_dssp -----CCEEEEEETTSCEEEEETTTTEEEEEECCCC---------SCEEEEEE--CTTSSEEEEEETTCEEEEEETTTTE
T ss_pred CCCCCccEEEEEeCCCEEEEEECCcchhheeecCCC---------CcEEEEEE--cCCCCEEEEEeCCCeEEEEECCCCc
Confidence 4589999999999999999988887777654 56999999 8999999999999999999999865
Q ss_pred ceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEecc-------ccCceeEEEecCCCCEEEEEeC
Q 019405 249 RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK-------CSGSIRSIARHPTLPIIASCGL 321 (341)
Q Consensus 249 ~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~s~~~ 321 (341)
. +..+.. ..+|.+++|+|++.+|++++.+ .+++|++..+..+..+..+ +...+.+++|+|+|++|++++.
T Consensus 230 ~-~~~~~~-~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~ 306 (319)
T 3frx_A 230 A-MYTLSA-QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYT 306 (319)
T ss_dssp E-EEEEEC-CSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEET
T ss_pred E-EEEecC-CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeec
Confidence 4 677764 4689999999999999888755 5999999988777666432 2567899999999999999999
Q ss_pred CCcEEEEEcCCC
Q 019405 322 DSYLRFWDIKTR 333 (341)
Q Consensus 322 dg~v~iwd~~~~ 333 (341)
|+.|++||+.++
T Consensus 307 Dg~i~vWd~~t~ 318 (319)
T 3frx_A 307 DNVIRVWQVMTA 318 (319)
T ss_dssp TSCEEEEEEEEC
T ss_pred CceEEEEEEeec
Confidence 999999999875
No 10
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.5e-41 Score=290.75 Aligned_cols=283 Identities=13% Similarity=0.143 Sum_probs=226.2
Q ss_pred ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 94 (341)
-.+++++.||.|++|++... +....+..|...+..++|++++. +|++|+.|+.|+||++.+........ .
T Consensus 79 ~~l~s~s~D~~v~iWd~~~~-----~~~~~~~~h~~~v~~~~~s~~g~----~las~~~d~~v~iw~~~~~~~~~~~~-~ 148 (380)
T 3iz6_a 79 NWIVSASQDGRLIVWNALTS-----QKTHAIKLHCPWVMECAFAPNGQ----SVACGGLDSACSIFNLSSQADRDGNM-P 148 (380)
T ss_dssp SCEEEEETTSEEEEEETTTT-----EEEEEEECCCTTCCCCEECTTSS----EEEECCSSSCCEEEECCCCSSCCCSS-T
T ss_pred CEEEEEeCCCeEEEEECCCC-----ccceEEecCCCCEEEEEECCCCC----EEEEeeCCCcEEEEECCCCccccCCc-c
Confidence 45889999999999998776 56667888999999999987766 89999999999999997532110000 0
Q ss_pred CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEE----eecCCceEEEEe
Q 019405 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN----VCASGTIAFSKV 170 (341)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~----~~~~~~i~~~~~ 170 (341)
.......|.+.+.++.+.+.... .+++++.|+.+++|++.... .+..+. ..|...|.++++
T Consensus 149 ~~~~~~gh~~~v~~~~~~~~~~~-------~l~s~s~D~~i~~wd~~~~~--------~~~~~~~~~~~~h~~~v~~~~~ 213 (380)
T 3iz6_a 149 VSRVLTGHKGYASSCQYVPDQET-------RLITGSGDQTCVLWDVTTGQ--------RISIFGSEFPSGHTADVLSLSI 213 (380)
T ss_dssp TCCBCCCCSSCCCCCBCCSSSSS-------CEEEECTTSCEEEECTTTCC--------EEEEECCCSSSSCCSCEEEEEE
T ss_pred ceeeccCCCcceEEEEEecCCCC-------EEEEECCCCcEEEEEcCCCc--------EEEEeecccCCCCccCeEEEEe
Confidence 00011235566777777665442 79999999999999986543 344442 235678999999
Q ss_pred cC-CCCEEEEeeCCCeEEEEECC-CCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCC
Q 019405 171 DI-SEKFSLFGGKGVEVNVWDLD-KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR 248 (341)
Q Consensus 171 ~~-~~~~l~~~~~d~~v~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 248 (341)
++ +++++++|+.|+.|++||++ ..+.+..+..|. ..|.+++| +|++.+|++++.|++|++||+++++
T Consensus 214 ~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~---------~~v~~v~~--~p~~~~l~s~s~D~~i~lwd~~~~~ 282 (380)
T 3iz6_a 214 NSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHE---------GDINSVKF--FPDGQRFGTGSDDGTCRLFDMRTGH 282 (380)
T ss_dssp CSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCS---------SCCCEEEE--CTTSSEEEEECSSSCEEEEETTTTE
T ss_pred ecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcC---------CCeEEEEE--ecCCCeEEEEcCCCeEEEEECCCCc
Confidence 77 88999999999999999998 445566666543 66999999 8999999999999999999999876
Q ss_pred ceeEEEEecC-------CCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEE----eccccCceeEEEecCCCCEEE
Q 019405 249 RPVMSFDFRE-------TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCF----IGKCSGSIRSIARHPTLPIIA 317 (341)
Q Consensus 249 ~~~~~~~~~~-------~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~l~ 317 (341)
. +..+..+. ..|++++|+|+|++|++|+.||.|++||+.+++.+..+ .+| .+.|++++|+|++.+|+
T Consensus 283 ~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h-~~~v~~l~~s~dg~~l~ 360 (380)
T 3iz6_a 283 Q-LQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSH-EGRISCLGLSSDGSALC 360 (380)
T ss_dssp E-EEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSC-CCCCCEEEECSSSSEEE
T ss_pred E-EEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCC-CCceEEEEECCCCCEEE
Confidence 4 66665432 24899999999999999999999999999999888777 456 89999999999999999
Q ss_pred EEeCCCcEEEEEcCCCce
Q 019405 318 SCGLDSYLRFWDIKTRQL 335 (341)
Q Consensus 318 s~~~dg~v~iwd~~~~~~ 335 (341)
+|+.|+.|++|++..++.
T Consensus 361 sgs~D~~i~iW~~~~~~~ 378 (380)
T 3iz6_a 361 TGSWDKNLKIWAFSGHRK 378 (380)
T ss_dssp EECTTSCEEEEECCSSSS
T ss_pred EeeCCCCEEEEecCCCcc
Confidence 999999999999987654
No 11
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.2e-40 Score=280.67 Aligned_cols=268 Identities=14% Similarity=0.193 Sum_probs=225.0
Q ss_pred ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCc------ch
Q 019405 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD------LR 88 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~------~~ 88 (341)
-++++++.||.+++|+.... +....+..|...+.+++|++++. +|++|+.|+.+++|++.... ..
T Consensus 77 ~~l~s~s~Dg~v~vWd~~~~-----~~~~~~~~~~~~v~~~~~sp~g~----~lasg~~d~~i~v~~~~~~~~~~~~~~~ 147 (354)
T 2pbi_B 77 RRIVSSSQDGKVIVWDSFTT-----NKEHAVTMPCTWVMACAYAPSGC----AIACGGLDNKCSVYPLTFDKNENMAAKK 147 (354)
T ss_dssp SEEEEEETTSEEEEEETTTC-----CEEEEEECSSSCCCEEEECTTSS----EEEEESTTSEEEEEECCCCTTCCSGGGC
T ss_pred CEEEEEeCCCeEEEEECCCC-----CcceEEecCCCCEEEEEECCCCC----EEEEeeCCCCEEEEEEeccccccccccc
Confidence 46889999999999998765 44556667888899999988766 89999999999999986432 12
Q ss_pred heeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEE
Q 019405 89 VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS 168 (341)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~ 168 (341)
..+.. |...+.++.+.+... .+++++.|+++++|+++... .+..+. .|...|.++
T Consensus 148 ~~~~~--------h~~~v~~~~~~~~~~--------~l~t~s~D~~v~lwd~~~~~--------~~~~~~-~h~~~v~~~ 202 (354)
T 2pbi_B 148 KSVAM--------HTNYLSACSFTNSDM--------QILTASGDGTCALWDVESGQ--------LLQSFH-GHGADVLCL 202 (354)
T ss_dssp EEEEE--------CSSCEEEEEECSSSS--------EEEEEETTSEEEEEETTTCC--------EEEEEE-CCSSCEEEE
T ss_pred eeeec--------cCCcEEEEEEeCCCC--------EEEEEeCCCcEEEEeCCCCe--------EEEEEc-CCCCCeEEE
Confidence 22333 456777887776655 89999999999999986433 455554 367789999
Q ss_pred EecC--CCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCC
Q 019405 169 KVDI--SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA 246 (341)
Q Consensus 169 ~~~~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 246 (341)
+++| ++++|++|+.|+.|++||+++++.+..+..|. ..|.+++| +|++.+|++++.|++|++||++.
T Consensus 203 ~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~---------~~v~~v~~--~p~~~~l~s~s~D~~v~lwd~~~ 271 (354)
T 2pbi_B 203 DLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHE---------SDVNSVRY--YPSGDAFASGSDDATCRLYDLRA 271 (354)
T ss_dssp EECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCS---------SCEEEEEE--CTTSSEEEEEETTSCEEEEETTT
T ss_pred EEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC---------CCeEEEEE--eCCCCEEEEEeCCCeEEEEECCC
Confidence 9987 56899999999999999999999888887654 66999999 89999999999999999999998
Q ss_pred CCceeEEEEec--CCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCc
Q 019405 247 QRRPVMSFDFR--ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSY 324 (341)
Q Consensus 247 ~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~ 324 (341)
.+. +..+..+ ...+.+++|+|++++|++|+.|+.|++||+.+++.+..+.+| .+.|++++|+|++++|++++.|+.
T Consensus 272 ~~~-~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h-~~~v~~l~~spdg~~l~sgs~D~~ 349 (354)
T 2pbi_B 272 DRE-VAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGH-ENRVSTLRVSPDGTAFCSGSWDHT 349 (354)
T ss_dssp TEE-EEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCC-SSCEEEEEECTTSSCEEEEETTSE
T ss_pred CcE-EEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECC-CCcEEEEEECCCCCEEEEEcCCCC
Confidence 653 5555433 346899999999999999999999999999999999999998 899999999999999999999999
Q ss_pred EEEEE
Q 019405 325 LRFWD 329 (341)
Q Consensus 325 v~iwd 329 (341)
|++|+
T Consensus 350 v~vW~ 354 (354)
T 2pbi_B 350 LRVWA 354 (354)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 99996
No 12
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1e-40 Score=302.47 Aligned_cols=298 Identities=13% Similarity=0.143 Sum_probs=236.1
Q ss_pred ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 94 (341)
.++++++.||.+++|+.... +....+.+|...|.+++|++++. +|++|+.|++|+|||+.+++.+..+...
T Consensus 161 ~~l~s~s~D~~v~lwd~~~~-----~~~~~l~~H~~~V~~v~fspdg~----~las~s~D~~i~lwd~~~g~~~~~~~~~ 231 (611)
T 1nr0_A 161 FRIISGSDDNTVAIFEGPPF-----KFKSTFGEHTKFVHSVRYNPDGS----LFASTGGDGTIVLYNGVDGTKTGVFEDD 231 (611)
T ss_dssp CEEEEEETTSCEEEEETTTB-----EEEEEECCCSSCEEEEEECTTSS----EEEEEETTSCEEEEETTTCCEEEECBCT
T ss_pred eEEEEEeCCCeEEEEECCCC-----eEeeeeccccCceEEEEECCCCC----EEEEEECCCcEEEEECCCCcEeeeeccc
Confidence 46899999999999997654 56678899999999999998766 8999999999999999988877665320
Q ss_pred CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeeccc------------------------ccccC
Q 019405 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV------------------------SAESS 150 (341)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~------------------------~~~~~ 150 (341)
......|.+.+.++.|.+... .|++++.|+++++|++..... .+++.
T Consensus 232 -~~~~~~h~~~V~~v~~spdg~--------~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~ 302 (611)
T 1nr0_A 232 -SLKNVAHSGSVFGLTWSPDGT--------KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISA 302 (611)
T ss_dssp -TSSSCSSSSCEEEEEECTTSS--------EEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEET
T ss_pred -cccccccCCCEEEEEECCCCC--------EEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeC
Confidence 001113668898998877665 899999999999999864321 23446
Q ss_pred CceEEEEEee----------cCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCC-CCCC-------------
Q 019405 151 CSTVKSWNVC----------ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKP-PPKN------------- 206 (341)
Q Consensus 151 ~~~v~~~~~~----------~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~-~~~~------------- 206 (341)
++.+++|+.. |...|.+++|+|++++|++++.|++|++||+.+++....+.. |...
T Consensus 303 d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~ 382 (611)
T 1nr0_A 303 NGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF 382 (611)
T ss_dssp TCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEE
T ss_pred CCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEE
Confidence 6778888743 456799999999999999999999999999988765443210 1000
Q ss_pred -----------------------------------------------------------ccCccCCeeeeEEEEEecCCC
Q 019405 207 -----------------------------------------------------------SLGIFTPTWFTSAAFLSIDDH 227 (341)
Q Consensus 207 -----------------------------------------------------------~~~~~~~~~v~~~~~~~~~~~ 227 (341)
.....+...+.+++| +|++
T Consensus 383 s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~--spdg 460 (611)
T 1nr0_A 383 TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVAL--SNDK 460 (611)
T ss_dssp EEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEE--CTTS
T ss_pred EEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEE--eCCC
Confidence 000012244678999 8999
Q ss_pred CEEEEEeCCCeEEEEEcCCCCce-eEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCC-CeEEeE--EeccccCc
Q 019405 228 RKFVAGTNDHQVRLYDTSAQRRP-VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT-GKLLGC--FIGKCSGS 303 (341)
Q Consensus 228 ~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~-~~~~~~--~~~~~~~~ 303 (341)
++|++|+.|++|++||+...... +.. ..|...|++++|+|++++|++++.|+.|++||+.+ ++++.. +..| ...
T Consensus 461 ~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H-~~~ 538 (611)
T 1nr0_A 461 QFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFH-TAK 538 (611)
T ss_dssp CEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCC-SSC
T ss_pred CEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeec-ccc
Confidence 99999999999999999875421 233 67999999999999999999999999999999987 666554 2336 899
Q ss_pred eeEEEecCCCCEEEEEeCCCcEEEEEcCCCc
Q 019405 304 IRSIARHPTLPIIASCGLDSYLRFWDIKTRQ 334 (341)
Q Consensus 304 i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 334 (341)
|++++|+|++++|++++.|++|++||+++++
T Consensus 539 V~~v~fspdg~~lasgs~D~~v~lW~~~~~~ 569 (611)
T 1nr0_A 539 VACVSWSPDNVRLATGSLDNSVIVWNMNKPS 569 (611)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred eeEEEECCCCCEEEEEECCCcEEEEECCCcc
Confidence 9999999999999999999999999998765
No 13
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.1e-41 Score=286.08 Aligned_cols=254 Identities=14% Similarity=0.123 Sum_probs=200.3
Q ss_pred eccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccccccc
Q 019405 44 RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS 123 (341)
Q Consensus 44 ~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (341)
...+|...|.+++|++++. +++++.||+|+|||+.+++........ ...|.+.+.++.+.+...
T Consensus 89 ~~~~~~~~V~~~~~s~d~~-----~l~~s~dg~v~lWd~~~~~~~~~~~~~----~~~h~~~V~~v~~spdg~------- 152 (357)
T 4g56_B 89 AGVQTEAGVTDVAWVSEKG-----ILVASDSGAVELWEILEKESLLVNKFA----KYEHDDIVKTLSVFSDGT------- 152 (357)
T ss_dssp EEEECSSCEEEEEEETTTE-----EEEEETTSCEEEC--------CCCCEE----ECCCSSCEEEEEECSSSS-------
T ss_pred ccCCCCCCEEEEEEcCCCC-----EEEEECCCEEEEeeccccceeEEEeec----cCCCCCCEEEEEECCCCC-------
Confidence 3446888899999998765 777888999999999887655433210 013568899998877666
Q ss_pred ceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCC-EEEEeeCCCeEEEEECCCCceeeecCC
Q 019405 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK-FSLFGGKGVEVNVWDLDKCEKIWTAKP 202 (341)
Q Consensus 124 ~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~ 202 (341)
.|++++.|+.+++|++.... .+..+. .|...|.+++|++++. ++++++.|+.|++||+++++....+..
T Consensus 153 -~l~sgs~dg~v~iwd~~~~~--------~~~~~~-~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~ 222 (357)
T 4g56_B 153 -QAVSGGKDFSVKVWDLSQKA--------VLKSYN-AHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDF 222 (357)
T ss_dssp -EEEEEETTSCEEEEETTTTE--------EEEEEC-CCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCC
T ss_pred -EEEEEeCCCeEEEEECCCCc--------EEEEEc-CCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeee
Confidence 89999999999999986433 444444 3678899999999874 789999999999999998887765544
Q ss_pred CCCCccCccCCeeeeEEEEEecCC-CCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCC-ceEEEEeCCC
Q 019405 203 PPKNSLGIFTPTWFTSAAFLSIDD-HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSG 280 (341)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~g~~dg 280 (341)
.. +...+.+++| +|+ +.+|++|+.|+.|++||+++++. +..+..|...|++++|+|++ ++|++|+.|+
T Consensus 223 ~~-------~~~~v~~v~~--sp~~~~~la~g~~d~~i~~wd~~~~~~-~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~ 292 (357)
T 4g56_B 223 CA-------SDTIPTSVTW--HPEKDDTFACGDETGNVSLVNIKNPDS-AQTSAVHSQNITGLAYSYHSSPFLASISEDC 292 (357)
T ss_dssp TT-------CCSCEEEEEE--CTTSTTEEEEEESSSCEEEEESSCGGG-CEEECCCSSCEEEEEECSSSSCCEEEEETTS
T ss_pred cc-------ccccccchhh--hhcccceEEEeecccceeEEECCCCcE-eEEEeccceeEEEEEEcCCCCCEEEEEeCCC
Confidence 32 2356899999 665 56889999999999999998764 88899999999999999987 6799999999
Q ss_pred CEEEEECCCCeEEeEEeccccCceeEEEecC-CCCEEEEEeCCCcEEEEEcCCCce
Q 019405 281 DLASVDIRTGKLLGCFIGKCSGSIRSIARHP-TLPIIASCGLDSYLRFWDIKTRQL 335 (341)
Q Consensus 281 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~ 335 (341)
.|+|||+++++++..+ +| .+.|++++|+| ++.+|++++.||+|++||+.+...
T Consensus 293 ~i~iwd~~~~~~~~~~-~H-~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 293 TVAVLDADFSEVFRDL-SH-RDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGR 346 (357)
T ss_dssp CEEEECTTSCEEEEEC-CC-SSCEEEEEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred EEEEEECCCCcEeEEC-CC-CCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence 9999999999887655 66 89999999998 789999999999999999976433
No 14
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=8.2e-40 Score=276.30 Aligned_cols=284 Identities=14% Similarity=0.115 Sum_probs=217.9
Q ss_pred ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCc--chheee
Q 019405 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD--LRVAIS 92 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~ 92 (341)
-.+++++.||.|++|++... ..........+|...|.+++|++++. +|++|+.|++|+||+..++. .+..+.
T Consensus 29 ~~las~~~D~~i~iw~~~~~--~~~~~~~~~~~h~~~v~~~~~sp~g~----~l~s~s~D~~v~iw~~~~~~~~~~~~~~ 102 (345)
T 3fm0_A 29 TLLASCGGDRRIRIWGTEGD--SWICKSVLSEGHQRTVRKVAWSPCGN----YLASASFDATTCIWKKNQDDFECVTTLE 102 (345)
T ss_dssp SCEEEEETTSCEEEEEEETT--EEEEEEEECSSCSSCEEEEEECTTSS----EEEEEETTSCEEEEEECCC-EEEEEEEC
T ss_pred CEEEEEcCCCeEEEEEcCCC--cceeeeeeccccCCcEEEEEECCCCC----EEEEEECCCcEEEEEccCCCeEEEEEcc
Confidence 35778899999999999875 10011112357999999999988766 89999999999999987664 344444
Q ss_pred ccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecC
Q 019405 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI 172 (341)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~ 172 (341)
. |...+.++.+.+... .|++++.|+.+++|++..... ...+..+. .|...|.+++|+|
T Consensus 103 ~--------h~~~v~~v~~sp~~~--------~l~s~s~D~~v~iwd~~~~~~-----~~~~~~~~-~h~~~v~~~~~~p 160 (345)
T 3fm0_A 103 G--------HENEVKSVAWAPSGN--------LLATCSRDKSVWVWEVDEEDE-----YECVSVLN-SHTQDVKHVVWHP 160 (345)
T ss_dssp C--------CSSCEEEEEECTTSS--------EEEEEETTSCEEEEEECTTSC-----EEEEEEEC-CCCSCEEEEEECS
T ss_pred C--------CCCCceEEEEeCCCC--------EEEEEECCCeEEEEECCCCCC-----eEEEEEec-CcCCCeEEEEECC
Confidence 4 557888888877655 999999999999999864321 11233333 4667899999999
Q ss_pred CCCEEEEeeCCCeEEEEECCCCce--eeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCC--
Q 019405 173 SEKFSLFGGKGVEVNVWDLDKCEK--IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR-- 248 (341)
Q Consensus 173 ~~~~l~~~~~d~~v~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-- 248 (341)
++++|++++.|+.|++||.++++. ...+..|. ..|.+++| +|++++|++++.|++|++||.....
T Consensus 161 ~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~---------~~v~~l~~--sp~g~~l~s~s~D~~v~iW~~~~~~~~ 229 (345)
T 3fm0_A 161 SQELLASASYDDTVKLYREEEDDWVCCATLEGHE---------STVWSLAF--DPSGQRLASCSDDRTVRIWRQYLPGNE 229 (345)
T ss_dssp SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCS---------SCEEEEEE--CTTSSEEEEEETTSCEEEEEEECTTCT
T ss_pred CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCC---------CceEEEEE--CCCCCEEEEEeCCCeEEEeccccCCCC
Confidence 999999999999999999987653 34555543 66999999 8999999999999999999974321
Q ss_pred ------------ceeEEEEe-cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCe--------EE-eEEeccccCceeE
Q 019405 249 ------------RPVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK--------LL-GCFIGKCSGSIRS 306 (341)
Q Consensus 249 ------------~~~~~~~~-~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~--------~~-~~~~~~~~~~i~~ 306 (341)
..+..+.+ |...|.+++|+|++..|++++.|+.|++|+...+. .. ....+| ...|++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~ 308 (345)
T 3fm0_A 230 QGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAH-SQDVNC 308 (345)
T ss_dssp TCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSS-SSCEEE
T ss_pred ccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccc-cCcEeE
Confidence 11233333 78899999999999999999999999999987542 11 222456 889999
Q ss_pred EEecCCCC-EEEEEeCCCcEEEEEcCCCceeee
Q 019405 307 IARHPTLP-IIASCGLDSYLRFWDIKTRQLLSA 338 (341)
Q Consensus 307 ~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~ 338 (341)
++|+|++. +|++++.||.|++|++.+++.+..
T Consensus 309 v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~ 341 (345)
T 3fm0_A 309 VAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHH 341 (345)
T ss_dssp EEECSSSTTEEEEEETTSCEEEEEECC------
T ss_pred eEEeCCCceEEEEcCCCCcEEEEEecCCCCccc
Confidence 99999985 999999999999999999887654
No 15
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.9e-39 Score=272.41 Aligned_cols=262 Identities=14% Similarity=0.137 Sum_probs=221.0
Q ss_pred ceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccc
Q 019405 40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES 119 (341)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (341)
+...++.+|...|.+++|++++. +|++|+.||+|+|||..+++.+..+.. +...+.++.+.+...
T Consensus 46 ~~~~~l~gH~~~v~~~~~s~d~~----~l~s~s~Dg~v~iWd~~~~~~~~~~~~--------~~~~v~~~~~s~~~~--- 110 (340)
T 1got_B 46 RTRRTLRGHLAKIYAMHWGTDSR----LLLSASQDGKLIIWDSYTTNKVHAIPL--------RSSWVMTCAYAPSGN--- 110 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSS----EEEEEETTTEEEEEETTTCCEEEEEEC--------SSSCEEEEEECTTSS---
T ss_pred hhheeecCCCCceEEEEECCCCC----EEEEEeCCCcEEEEECCCCCcceEeec--------CCccEEEEEECCCCC---
Confidence 34557889999999999987665 899999999999999999888877766 346677777766555
Q ss_pred ccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeee
Q 019405 120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT 199 (341)
Q Consensus 120 ~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~ 199 (341)
.+++++.|+.+++|++..... .....+.+ ..|...|.++.|++++. +++++.|+.|++||+++++.+..
T Consensus 111 -----~l~s~~~d~~v~iw~~~~~~~----~~~~~~~~-~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~ 179 (340)
T 1got_B 111 -----YVACGGLDNICSIYNLKTREG----NVRVSREL-AGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTT 179 (340)
T ss_dssp -----EEEEEETTCEEEEEETTTCSB----SCEEEEEE-ECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEE
T ss_pred -----EEEEEeCCCeEEEEECccCCC----cceeEEEe-cCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEE
Confidence 899999999999999854321 00122222 34678899999998765 88999999999999999999888
Q ss_pred cCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCC
Q 019405 200 AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS 279 (341)
Q Consensus 200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d 279 (341)
+..|. ..|.+++| +|++++|++++.|+.|++||++++.. +..+.+|...|.+++|+|++.+|++|+.|
T Consensus 180 ~~~h~---------~~v~~~~~--~~~~~~l~sg~~d~~v~~wd~~~~~~-~~~~~~h~~~v~~v~~~p~~~~l~s~s~d 247 (340)
T 1got_B 180 FTGHT---------GDVMSLSL--APDTRLFVSGACDASAKLWDVREGMC-RQTFTGHESDINAICFFPNGNAFATGSDD 247 (340)
T ss_dssp ECCCS---------SCEEEEEE--CTTSSEEEEEETTSCEEEEETTTCSE-EEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EcCCC---------CceEEEEE--CCCCCEEEEEeCCCcEEEEECCCCee-EEEEcCCcCCEEEEEEcCCCCEEEEEcCC
Confidence 87654 56999999 88999999999999999999998764 88899999999999999999999999999
Q ss_pred CCEEEEECCCCeEEeEEecc-ccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 280 GDLASVDIRTGKLLGCFIGK-CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 280 g~i~iwd~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
+.|++||+++++.+..+..+ +...|.+++|+|++++|++++.|+.|++||+.+++.+..+
T Consensus 248 ~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~ 308 (340)
T 1got_B 248 ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL 308 (340)
T ss_dssp SCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEe
Confidence 99999999999888777532 1347999999999999999999999999999998887665
No 16
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.2e-39 Score=272.59 Aligned_cols=277 Identities=12% Similarity=0.090 Sum_probs=220.9
Q ss_pred CceeeeecCCCCeEEEEEecCcc-C-ccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchhee
Q 019405 14 PLRALTFDSLGLIKVIEARGEHG-G-VPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAI 91 (341)
Q Consensus 14 ~~~~~~~~~~g~i~~~~~~~~~~-g-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 91 (341)
.-.+++++.||.|++|++..... + .......+.+|...|.+++|++++. +|++|+.|++|++||+.+++.+..+
T Consensus 39 ~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~----~l~s~s~D~~v~lwd~~~~~~~~~~ 114 (343)
T 2xzm_R 39 SPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC----FAISSSWDKTLRLWDLRTGTTYKRF 114 (343)
T ss_dssp CCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT----EEEEEETTSEEEEEETTSSCEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC----EEEEEcCCCcEEEEECCCCcEEEEE
Confidence 34688999999999999986421 1 1134557888999999999987665 8999999999999999999888887
Q ss_pred eccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEE--eecCCceEEEE
Q 019405 92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN--VCASGTIAFSK 169 (341)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~--~~~~~~i~~~~ 169 (341)
.. |...+.++.+.+... .+++++.|+.+++|++.... ..... ..+...|.+++
T Consensus 115 ~~--------h~~~v~~v~~sp~~~--------~l~s~~~d~~i~~wd~~~~~---------~~~~~~~~~~~~~v~~~~ 169 (343)
T 2xzm_R 115 VG--------HQSEVYSVAFSPDNR--------QILSAGAEREIKLWNILGEC---------KFSSAEKENHSDWVSCVR 169 (343)
T ss_dssp EC--------CCSCEEEEEECSSTT--------EEEEEETTSCEEEEESSSCE---------EEECCTTTSCSSCEEEEE
T ss_pred cC--------CCCcEEEEEECCCCC--------EEEEEcCCCEEEEEeccCCc---------eeeeecccCCCceeeeee
Confidence 76 457788888877666 89999999999999985221 11111 13566799999
Q ss_pred ecCCC----------CEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeE
Q 019405 170 VDISE----------KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239 (341)
Q Consensus 170 ~~~~~----------~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i 239 (341)
|+|++ .++++++.|+.|++||. +.+....+..|. ..|.+++| +|++++|++++.|+.|
T Consensus 170 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~---------~~v~~~~~--s~~g~~l~sgs~dg~v 237 (343)
T 2xzm_R 170 YSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHE---------SNVNHLSI--SPNGKYIATGGKDKKL 237 (343)
T ss_dssp ECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCS---------SCEEEEEE--CTTSSEEEEEETTCEE
T ss_pred eccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCcc---------ccceEEEE--CCCCCEEEEEcCCCeE
Confidence 99986 78999999999999994 455555555543 66999999 8999999999999999
Q ss_pred EEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEe--EEe-----------ccccCceeE
Q 019405 240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLG--CFI-----------GKCSGSIRS 306 (341)
Q Consensus 240 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~--~~~-----------~~~~~~i~~ 306 (341)
++||+.....+...+. +...|.+++|+|++.+++++ .|+.|++||+.+++... .+. +| ...|.+
T Consensus 238 ~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~ 314 (343)
T 2xzm_R 238 LIWDILNLTYPQREFD-AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGK-NPQCTS 314 (343)
T ss_dssp EEEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCS-CCCEEE
T ss_pred EEEECCCCcccceeec-CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCC-CCceEE
Confidence 9999965444455443 55679999999999877655 57889999998776543 333 44 778999
Q ss_pred EEecCCCCEEEEEeCCCcEEEEEcCCCc
Q 019405 307 IARHPTLPIIASCGLDSYLRFWDIKTRQ 334 (341)
Q Consensus 307 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 334 (341)
++|+|++++|++|+.||.|++|++++++
T Consensus 315 ~~~sp~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 315 LAWNALGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp EEECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred EEECCCCCeEEEecCCceEEEEEEEccC
Confidence 9999999999999999999999998764
No 17
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.1e-39 Score=278.70 Aligned_cols=273 Identities=17% Similarity=0.197 Sum_probs=217.7
Q ss_pred cCCCCeEEEEEecCccCccceeeeccCCC------------------CCceeEEEeccCCCCCceEEEEccCCeEEEeeC
Q 019405 21 DSLGLIKVIEARGEHGGVPKVVERWGDPH------------------SSNCVLAASIDDSQNDPLLAVARKNGLTDILNP 82 (341)
Q Consensus 21 ~~~g~i~~~~~~~~~~g~~~~~~~~~~~~------------------~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~ 82 (341)
+.++.+++|++.+. +.+..+..+. ..+.+++|++++. +|++|+.|++|+|||+
T Consensus 82 g~~~~v~i~~~~~g-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~----~l~s~~~d~~i~iwd~ 152 (393)
T 1erj_A 82 GCNKTTQVYRVSDG-----SLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK----FLATGAEDRLIRIWDI 152 (393)
T ss_dssp ECBSCEEEEETTTC-----CEEEEECC-----------------CCCCBEEEEEECTTSS----EEEEEETTSCEEEEET
T ss_pred EcCCcEEEEEecCC-----CEEEEecCccccccccccccccccCCCceeEEEEEECCCCC----EEEEEcCCCeEEEEEC
Confidence 34566788887664 3443443322 2377888877665 8999999999999999
Q ss_pred CCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecC
Q 019405 83 LNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCAS 162 (341)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~ 162 (341)
.+++.+..+.. |...+.++.+.+... .+++++.|+.+++|++.... .+..+ .+.
T Consensus 153 ~~~~~~~~~~~--------h~~~v~~~~~~p~~~--------~l~s~s~d~~v~iwd~~~~~--------~~~~~--~~~ 206 (393)
T 1erj_A 153 ENRKIVMILQG--------HEQDIYSLDYFPSGD--------KLVSGSGDRTVRIWDLRTGQ--------CSLTL--SIE 206 (393)
T ss_dssp TTTEEEEEECC--------CSSCEEEEEECTTSS--------EEEEEETTSEEEEEETTTTE--------EEEEE--ECS
T ss_pred CCCcEEEEEcc--------CCCCEEEEEEcCCCC--------EEEEecCCCcEEEEECCCCe--------eEEEE--EcC
Confidence 99888777766 457788888877666 89999999999999986432 22232 345
Q ss_pred CceEEEEecC-CCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEE
Q 019405 163 GTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL 241 (341)
Q Consensus 163 ~~i~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~i 241 (341)
..+.+++++| +++++++++.|+.|++||+++++.+..+..... ....|...|.+++| +|++.+|++++.|+.|++
T Consensus 207 ~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~--~~~~h~~~v~~v~~--~~~g~~l~s~s~d~~v~~ 282 (393)
T 1erj_A 207 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENE--SGTGHKDSVYSVVF--TRDGQSVVSGSLDRSVKL 282 (393)
T ss_dssp SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC--------CCCSSCEEEEEE--CTTSSEEEEEETTSEEEE
T ss_pred CCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeeccccc--CCCCCCCCEEEEEE--CCCCCEEEEEeCCCEEEE
Confidence 6899999999 899999999999999999999887776643211 11225577999999 899999999999999999
Q ss_pred EEcCCCC-----------ceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEec
Q 019405 242 YDTSAQR-----------RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARH 310 (341)
Q Consensus 242 wd~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~ 310 (341)
||++... .....+.+|...|.+++|+|++.+|++|+.|+.|++||+++++++..+.+| .+.|.+++|+
T Consensus 283 wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h-~~~v~~v~~~ 361 (393)
T 1erj_A 283 WNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH-RNSVISVAVA 361 (393)
T ss_dssp EEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECC-SSCEEEEEEC
T ss_pred EECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCC-CCCEEEEEec
Confidence 9997632 124567789999999999999999999999999999999999999999998 8999999988
Q ss_pred C------CCCEEEEEeCCCcEEEEEcCCC
Q 019405 311 P------TLPIIASCGLDSYLRFWDIKTR 333 (341)
Q Consensus 311 ~------~~~~l~s~~~dg~v~iwd~~~~ 333 (341)
+ ++++|++++.||.|++|+++..
T Consensus 362 ~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 362 NGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp SSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred CCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 6 6789999999999999998754
No 18
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=5.6e-39 Score=272.03 Aligned_cols=266 Identities=11% Similarity=0.117 Sum_probs=223.3
Q ss_pred eeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccc
Q 019405 41 VVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS 120 (341)
Q Consensus 41 ~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (341)
....+.+|...|.+++|++++. +|++|+.||+|+|||..+++....+..+ ...+.++.+.+...
T Consensus 56 ~~~~l~gH~~~V~~~~~s~d~~----~l~s~s~Dg~v~vWd~~~~~~~~~~~~~--------~~~v~~~~~sp~g~---- 119 (354)
T 2pbi_B 56 TRRTLKGHGNKVLCMDWCKDKR----RIVSSSQDGKVIVWDSFTTNKEHAVTMP--------CTWVMACAYAPSGC---- 119 (354)
T ss_dssp EEEEEECCSSCEEEEEECTTSS----EEEEEETTSEEEEEETTTCCEEEEEECS--------SSCCCEEEECTTSS----
T ss_pred EEEEecCCCCeEEEEEECCCCC----EEEEEeCCCeEEEEECCCCCcceEEecC--------CCCEEEEEECCCCC----
Confidence 4557889999999999988765 8999999999999999888877776653 35677777766655
Q ss_pred cccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeec
Q 019405 121 SRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTA 200 (341)
Q Consensus 121 ~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~ 200 (341)
.+++++.|+.+.+|++....... ......... .|...|.+++|+|++..|++++.|++|++||+++++.+..+
T Consensus 120 ----~lasg~~d~~i~v~~~~~~~~~~--~~~~~~~~~-~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~ 192 (354)
T 2pbi_B 120 ----AIACGGLDNKCSVYPLTFDKNEN--MAAKKKSVA-MHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF 192 (354)
T ss_dssp ----EEEEESTTSEEEEEECCCCTTCC--SGGGCEEEE-ECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred ----EEEEeeCCCCEEEEEEecccccc--ccccceeee-ccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Confidence 99999999999999986543211 111223333 46788999999999999999999999999999999998888
Q ss_pred CCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCC
Q 019405 201 KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG 280 (341)
Q Consensus 201 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg 280 (341)
..|. ..|.+++|.|++++++|++++.|+.|++||+++++. +..+..|...|.+++|+|++.+|++|+.|+
T Consensus 193 ~~h~---------~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~-~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~ 262 (354)
T 2pbi_B 193 HGHG---------ADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC-VQAFETHESDVNSVRYYPSGDAFASGSDDA 262 (354)
T ss_dssp ECCS---------SCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred cCCC---------CCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcE-EEEecCCCCCeEEEEEeCCCCEEEEEeCCC
Confidence 7754 558999995555678999999999999999998764 888899999999999999999999999999
Q ss_pred CEEEEECCCCeEEeEEecc-ccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 281 DLASVDIRTGKLLGCFIGK-CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 281 ~i~iwd~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
.|++||+++++.+..+..+ +...+.+++|+|++++|++++.|+.|++||+.+++++..+
T Consensus 263 ~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l 322 (354)
T 2pbi_B 263 TCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSIL 322 (354)
T ss_dssp CEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEE
T ss_pred eEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEE
Confidence 9999999999887776543 1347899999999999999999999999999999887665
No 19
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=4.1e-39 Score=268.41 Aligned_cols=271 Identities=15% Similarity=0.152 Sum_probs=228.4
Q ss_pred ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 94 (341)
-.+++++.||.+++|++.+. +....+.+|...+..++|++++. +|++++.|+.|++||+++++.+..+..
T Consensus 36 ~~l~s~~~dg~i~iw~~~~~-----~~~~~~~~h~~~v~~~~~~~~~~----~l~s~~~d~~i~vwd~~~~~~~~~~~~- 105 (312)
T 4ery_A 36 EWLASSSADKLIKIWGAYDG-----KFEKTISGHKLGISDVAWSSDSN----LLVSASDDKTLKIWDVSSGKCLKTLKG- 105 (312)
T ss_dssp SEEEEEETTSCEEEEETTTC-----CEEEEECCCSSCEEEEEECTTSS----EEEEEETTSEEEEEETTTCCEEEEEEC-
T ss_pred CEEEEeeCCCeEEEEeCCCc-----ccchhhccCCCceEEEEEcCCCC----EEEEECCCCEEEEEECCCCcEEEEEcC-
Confidence 35788899999999998765 56667888999999999988665 899999999999999999988888776
Q ss_pred CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC
Q 019405 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (341)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~ 174 (341)
+...+.++.+.+... .+++++.|+.+++|++.... .+..+. .+...|.+++|+|++
T Consensus 106 -------~~~~v~~~~~~~~~~--------~l~s~~~d~~i~iwd~~~~~--------~~~~~~-~~~~~v~~~~~~~~~ 161 (312)
T 4ery_A 106 -------HSNYVFCCNFNPQSN--------LIVSGSFDESVRIWDVKTGK--------CLKTLP-AHSDPVSAVHFNRDG 161 (312)
T ss_dssp -------CSSCEEEEEECSSSS--------EEEEEETTSCEEEEETTTCC--------EEEEEC-CCSSCEEEEEECTTS
T ss_pred -------CCCCEEEEEEcCCCC--------EEEEEeCCCcEEEEECCCCE--------EEEEec-CCCCcEEEEEEcCCC
Confidence 446788888776655 89999999999999986433 344443 356789999999999
Q ss_pred CEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEE
Q 019405 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF 254 (341)
Q Consensus 175 ~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 254 (341)
+++++++.|+.|++||+++++.+..+.... ...+..++| +|++++|++++.|+.|++||+++++. +..+
T Consensus 162 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~--------~~~~~~~~~--~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~ 230 (312)
T 4ery_A 162 SLIVSSSYDGLCRIWDTASGQCLKTLIDDD--------NPPVSFVKF--SPNGKYILAATLDNTLKLWDYSKGKC-LKTY 230 (312)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEEEECCSS--------CCCEEEEEE--CTTSSEEEEEETTTEEEEEETTTTEE-EEEE
T ss_pred CEEEEEeCCCcEEEEECCCCceeeEEeccC--------CCceEEEEE--CCCCCEEEEEcCCCeEEEEECCCCcE-EEEE
Confidence 999999999999999999988777664332 245888999 89999999999999999999998664 7778
Q ss_pred EecCCCeEE--EEE-cCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEe--CCCcEEEEE
Q 019405 255 DFRETPIKA--VAE-EPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG--LDSYLRFWD 329 (341)
Q Consensus 255 ~~~~~~v~~--~~~-~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~--~dg~v~iwd 329 (341)
..|...... ..+ .+++.+|++|+.||.|++||+++++.+..+.+| ...|.+++|+|++++|++++ .|+.|++|+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h-~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~ 309 (312)
T 4ery_A 231 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-TDVVISTACHPTENIIASAALENDKTIKLWK 309 (312)
T ss_dssp CSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCC-SSCEEEEEECSSSSEEEEEECTTTCCEEEEE
T ss_pred EecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhcc-CCcEEEEeecCcCCceEEEEccCCccEEEec
Confidence 777654332 234 467889999999999999999999999999998 89999999999999999987 699999998
Q ss_pred cC
Q 019405 330 IK 331 (341)
Q Consensus 330 ~~ 331 (341)
.+
T Consensus 310 ~d 311 (312)
T 4ery_A 310 SD 311 (312)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 20
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3.5e-39 Score=292.40 Aligned_cols=267 Identities=12% Similarity=0.094 Sum_probs=217.8
Q ss_pred CCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcch--heeeccCCCCCC
Q 019405 23 LGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR--VAISNAGDSGAQ 100 (341)
Q Consensus 23 ~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~--~~~~~~~~~~~~ 100 (341)
++.+++|++.+. +....+.+|...|++++|++++. +||+|+.|++|+|||+.+++.. ..+..
T Consensus 38 ~~~v~l~~~~~~-----~~~~~~~~h~~~v~~~~~spdg~----~lasg~~d~~v~lWd~~~~~~~~~~~~~~------- 101 (611)
T 1nr0_A 38 GTSVYTVPVGSL-----TDTEIYTEHSHQTTVAKTSPSGY----YCASGDVHGNVRIWDTTQTTHILKTTIPV------- 101 (611)
T ss_dssp TTEEEEEETTCS-----SCCEEECCCSSCEEEEEECTTSS----EEEEEETTSEEEEEESSSTTCCEEEEEEC-------
T ss_pred CCEEEEecCCCc-----ccCeEecCCCCceEEEEECCCCc----EEEEEeCCCCEEEeECCCCcceeeEeecc-------
Confidence 456788887654 45567889999999999998766 9999999999999999765432 33443
Q ss_pred CCCCceeeEeeeeccccccccccceeEEEccc----ceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCC-
Q 019405 101 PEDDGIVGLHLFKRQREESSSRSRTLLTCTTK----GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK- 175 (341)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~- 175 (341)
+.+++.++.|.+... .+++++.+ +.+.+|+... .+..+ ..|...|.+++|+|++.
T Consensus 102 -~~~~v~~v~fs~dg~--------~l~~~~~~~~~~~~v~~wd~~~----------~~~~l-~gh~~~v~~v~f~p~~~~ 161 (611)
T 1nr0_A 102 -FSGPVKDISWDSESK--------RIAAVGEGRERFGHVFLFDTGT----------SNGNL-TGQARAMNSVDFKPSRPF 161 (611)
T ss_dssp -SSSCEEEEEECTTSC--------EEEEEECCSSCSEEEEETTTCC----------BCBCC-CCCSSCEEEEEECSSSSC
T ss_pred -cCCceEEEEECCCCC--------EEEEEECCCCceeEEEEeeCCC----------Cccee-cCCCCCceEEEECCCCCe
Confidence 457788888876655 77777654 4778887421 11111 24678899999999987
Q ss_pred EEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEE
Q 019405 176 FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD 255 (341)
Q Consensus 176 ~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 255 (341)
.|++++.|++|++||..+++....+..|. ..|.+++| +|++++|++++.|++|++||+.+++. +..+.
T Consensus 162 ~l~s~s~D~~v~lwd~~~~~~~~~l~~H~---------~~V~~v~f--spdg~~las~s~D~~i~lwd~~~g~~-~~~~~ 229 (611)
T 1nr0_A 162 RIISGSDDNTVAIFEGPPFKFKSTFGEHT---------KFVHSVRY--NPDGSLFASTGGDGTIVLYNGVDGTK-TGVFE 229 (611)
T ss_dssp EEEEEETTSCEEEEETTTBEEEEEECCCS---------SCEEEEEE--CTTSSEEEEEETTSCEEEEETTTCCE-EEECB
T ss_pred EEEEEeCCCeEEEEECCCCeEeeeecccc---------CceEEEEE--CCCCCEEEEEECCCcEEEEECCCCcE-eeeec
Confidence 59999999999999999888888877654 66999999 89999999999999999999988764 66663
Q ss_pred -------ecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEE--------------------------------
Q 019405 256 -------FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCF-------------------------------- 296 (341)
Q Consensus 256 -------~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-------------------------------- 296 (341)
+|...|.+++|+|++++|++++.|+.|++||+++++++..+
T Consensus 230 ~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~ 309 (611)
T 1nr0_A 230 DDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 309 (611)
T ss_dssp CTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEE
T ss_pred cccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEE
Confidence 69999999999999999999999999999999988765443
Q ss_pred -----------eccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeee
Q 019405 297 -----------IGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSA 338 (341)
Q Consensus 297 -----------~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 338 (341)
.+| ...|++++|+|++++|++++.|+.|++||+.++++...
T Consensus 310 ~~~~~~~~~~~~gh-~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~ 361 (611)
T 1nr0_A 310 NPELGSIDQVRYGH-NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRV 361 (611)
T ss_dssp ETTTTEEEEEECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEC
T ss_pred eCCCCCcceEEcCC-CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeee
Confidence 355 78999999999999999999999999999998876543
No 21
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.6e-38 Score=266.49 Aligned_cols=277 Identities=11% Similarity=0.111 Sum_probs=222.2
Q ss_pred ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 94 (341)
-.+++++.||.|++|++.............+.+|...|.+++|++++. +|++++.|+.|++|+............
T Consensus 52 ~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~----~l~s~~~d~~i~~~~~~~~~~~~~~~~- 126 (340)
T 4aow_A 52 DMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ----FALSGSWDGTLRLWDLTTGTTTRRFVG- 126 (340)
T ss_dssp TEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSS----EEEEEETTSEEEEEETTTTEEEEEEEC-
T ss_pred CEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCC----EEEEEcccccceEEeecccceeeeecC-
Confidence 357899999999999998764333345567888999999999987666 899999999999999987766555554
Q ss_pred CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC
Q 019405 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (341)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~ 174 (341)
+...+....+.+... .+++++.|+.+.+|++.... ........+...+..+++++++
T Consensus 127 -------~~~~~~~~~~~~~~~--------~l~s~s~d~~~~~~d~~~~~--------~~~~~~~~~~~~v~~~~~~~~~ 183 (340)
T 4aow_A 127 -------HTKDVLSVAFSSDNR--------QIVSGSRDKTIKLWNTLGVC--------KYTVQDESHSEWVSCVRFSPNS 183 (340)
T ss_dssp -------CSSCEEEEEECTTSS--------CEEEEETTSCEEEECTTSCE--------EEEECSSSCSSCEEEEEECSCS
T ss_pred -------CCCceeEEEEeecCc--------cceeecCCCeEEEEEeCCCc--------eEEEEeccccCcccceEEccCC
Confidence 224444444444444 89999999999999975332 2223333456788899998764
Q ss_pred --CEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeE
Q 019405 175 --KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM 252 (341)
Q Consensus 175 --~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 252 (341)
.++++++.|+.|++||+++++....+..+. ..|.+++| +|++++|++++.|+.|++||+++.+. +.
T Consensus 184 ~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~---------~~v~~~~~--s~~~~~l~s~s~Dg~i~iwd~~~~~~-~~ 251 (340)
T 4aow_A 184 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHT---------GYLNTVTV--SPDGSLCASGGKDGQAMLWDLNEGKH-LY 251 (340)
T ss_dssp SSCEEEEEETTSCEEEEETTTTEEEEEECCCS---------SCEEEEEE--CTTSSEEEEEETTCEEEEEETTTTEE-EE
T ss_pred CCcEEEEEcCCCEEEEEECCCCceeeEecCCC---------CcEEEEEE--CCCCCEEEEEeCCCeEEEEEeccCce-ee
Confidence 578899999999999999999888887654 56999999 89999999999999999999998654 66
Q ss_pred EEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEe---------ccccCceeEEEecCCCCEEEEEeCCC
Q 019405 253 SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI---------GKCSGSIRSIARHPTLPIIASCGLDS 323 (341)
Q Consensus 253 ~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~---------~~~~~~i~~~~~~~~~~~l~s~~~dg 323 (341)
.+.. ...+.++.|+|++. +++++.|+.|++||++++..+..+. +| ...|++++|+|++++|++|+.||
T Consensus 252 ~~~~-~~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~s~dg~~l~sgs~Dg 328 (340)
T 4aow_A 252 TLDG-GDIINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAE-PPQCTSLAWSADGQTLFAGYTDN 328 (340)
T ss_dssp EEEC-SSCEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CC-CCCEEEEEECTTSSEEEEEETTS
T ss_pred eecC-CceEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCC-CCCEEEEEECCCCCEEEEEeCCC
Confidence 6664 46899999999875 4566679999999999988776654 34 78999999999999999999999
Q ss_pred cEEEEEcCCCc
Q 019405 324 YLRFWDIKTRQ 334 (341)
Q Consensus 324 ~v~iwd~~~~~ 334 (341)
.|+|||+++|+
T Consensus 329 ~v~iW~~~tGt 339 (340)
T 4aow_A 329 LVRVWQVTIGT 339 (340)
T ss_dssp CEEEEEEEC--
T ss_pred EEEEEeCCCcC
Confidence 99999999986
No 22
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.4e-39 Score=268.45 Aligned_cols=276 Identities=15% Similarity=0.120 Sum_probs=207.8
Q ss_pred eeeeecCCCCeEEEEEecCccCccceeeec-cC-CCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCC-------c
Q 019405 16 RALTFDSLGLIKVIEARGEHGGVPKVVERW-GD-PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG-------D 86 (341)
Q Consensus 16 ~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~-~~-~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~-------~ 86 (341)
.+++++.||.|++|++... ..+....+ .. |...|.+++|++++. +|++|+.|++|+|||++.. +
T Consensus 26 ~las~~~D~~i~lw~~~~~---~~~~~~~~~~~~h~~~v~~v~~sp~~~----~las~s~D~~v~iw~~~~~~~~~~~~~ 98 (330)
T 2hes_X 26 ILATGSTDRKIKLVSVKYD---DFTLIDVLDETAHKKAIRSVAWRPHTS----LLAAGSFDSTVSIWAKEESADRTFEMD 98 (330)
T ss_dssp EEEEEESSSCEEEEECSSS---CCEEEEEECTTCCCSCEEEEEECTTSS----EEEEEETTSCEEEEEC-------CCCE
T ss_pred EEEEEcCCCEEEEEEecCC---CeEEEEEEecCCccCCEEEEEECCCCC----EEEEEeCCCcEEEEEcccCcCccccce
Confidence 6889999999999998764 11333344 33 899999999988765 8999999999999998542 2
Q ss_pred chheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceE
Q 019405 87 LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIA 166 (341)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~ 166 (341)
.+..+.. |.+.+.++.+.+... .|++++.|+.+++|++..... ....+..+. .|...|.
T Consensus 99 ~~~~~~~--------h~~~V~~v~~sp~g~--------~las~s~D~~v~iwd~~~~~~----~~~~~~~~~-~h~~~v~ 157 (330)
T 2hes_X 99 LLAIIEG--------HENEVKGVAWSNDGY--------YLATCSRDKSVWIWETDESGE----EYECISVLQ-EHSQDVK 157 (330)
T ss_dssp EEEEEC------------CEEEEEECTTSC--------EEEEEETTSCEEEEECCTTCC----CCEEEEEEC-CCSSCEE
T ss_pred eEEEEcC--------CCCcEEEEEECCCCC--------EEEEEeCCCEEEEEeccCCCC----CeEEEEEec-cCCCceE
Confidence 2333333 557888888877655 999999999999999843210 111233333 4678899
Q ss_pred EEEecCCCCEEEEeeCCCeEEEEECCCC--ceeeecCCCCCCccCccCCeeeeEEEEEecCC--CCEEEEEeCCCeEEEE
Q 019405 167 FSKVDISEKFSLFGGKGVEVNVWDLDKC--EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD--HRKFVAGTNDHQVRLY 242 (341)
Q Consensus 167 ~~~~~~~~~~l~~~~~d~~v~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~~~~~d~~i~iw 242 (341)
+++|+|++++|++++.|++|++||..++ +.+..+..|. ..|.+++| +|+ +.+|++++.|++|++|
T Consensus 158 ~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~---------~~v~~~~~--~~~~~~~~l~s~s~D~~v~iw 226 (330)
T 2hes_X 158 HVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHE---------GTVWSSDF--DKTEGVFRLCSGSDDSTVRVW 226 (330)
T ss_dssp EEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCS---------SCEEEEEE--CCSSSSCEEEEEETTSCEEEE
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCC---------CcEEEEEe--cCCCCeeEEEEEeCCCeEEEE
Confidence 9999999999999999999999998766 4566666654 66999999 666 6789999999999999
Q ss_pred EcCCCC-------ceeEEEEe-cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCe--EEeEE-eccccC-ceeEEEec
Q 019405 243 DTSAQR-------RPVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK--LLGCF-IGKCSG-SIRSIARH 310 (341)
Q Consensus 243 d~~~~~-------~~~~~~~~-~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~--~~~~~-~~~~~~-~i~~~~~~ 310 (341)
|++... .....+.. |...|.+++|++++ +|++++.||.|++||..+++ ..... .+| .. .|++++|+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h-~~~~v~~v~~~ 304 (330)
T 2hes_X 227 KYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCH-GVYEINVVKWL 304 (330)
T ss_dssp EEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTT-TTSCEEEEEEC
T ss_pred EecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecccccc-ccceEEEEEEe
Confidence 987532 12333333 88899999999765 89999999999999998874 33333 456 55 89999999
Q ss_pred C--CCCEEEEEeCCCcEEEEEcCC
Q 019405 311 P--TLPIIASCGLDSYLRFWDIKT 332 (341)
Q Consensus 311 ~--~~~~l~s~~~dg~v~iwd~~~ 332 (341)
| ++++|++++.||.|++||+++
T Consensus 305 ~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 305 ELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp -----CCEEEEETTSEEEEEEC--
T ss_pred cCCCceEEEEecCCCcEEEEEecc
Confidence 9 688999999999999999875
No 23
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=6.4e-39 Score=276.09 Aligned_cols=294 Identities=11% Similarity=0.045 Sum_probs=235.6
Q ss_pred ceeeeecCCCCeEEEEEecCcc-CccceeeeccCCCCCceeEEEeccCCCCC---ceEEEEccCCeEEEeeCCCCcc---
Q 019405 15 LRALTFDSLGLIKVIEARGEHG-GVPKVVERWGDPHSSNCVLAASIDDSQND---PLLAVARKNGLTDILNPLNGDL--- 87 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~s~~~~~~~---~~l~~~~~dg~i~iw~~~~~~~--- 87 (341)
-.+++++.||.|++|++..... ...+....+..|...+.+++|+++..+++ .+|++++.||.|++|++.+++.
T Consensus 27 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 106 (397)
T 1sq9_A 27 SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKK 106 (397)
T ss_dssp SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCC
T ss_pred CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccccc
Confidence 5688999999999999987620 11225667778999999999999832334 4899999999999999988776
Q ss_pred --hheeeccCCCCCCCC--CCceeeEeee----eccccccccccce-eEEEcccceeEEEEeee------cccccccCCc
Q 019405 88 --RVAISNAGDSGAQPE--DDGIVGLHLF----KRQREESSSRSRT-LLTCTTKGKASMRSIEV------TKVSAESSCS 152 (341)
Q Consensus 88 --~~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~~~-l~~~~~~g~~~i~~~~~------~~~~~~~~~~ 152 (341)
...+..+. .+ ...+.++.+. +... . +++++.||.+.+|++.. ...... .
T Consensus 107 ~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~--------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~ 170 (397)
T 1sq9_A 107 VIFEKLDLLD-----SDMKKHSFWALKWGASNDRLLS--------HRLVATDVKGTTYIWKFHPFADESNSLTLNW---S 170 (397)
T ss_dssp EEEEEECCSC-----TTGGGSCEEEEEEECCC----C--------EEEEEEETTSCEEEEEEESSSSHHHHTTTCC---C
T ss_pred ccceeecccc-----cccCCCcEEEEEEeeccCCCCc--------eEEEEEeCCCcEEEEeCCccccccccceeec---c
Confidence 55555431 01 3778888887 5555 7 99999999999999986 332110 0
Q ss_pred eEEEEE------eecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCC---CCCCccCccCCeeeeEEEEEe
Q 019405 153 TVKSWN------VCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKP---PPKNSLGIFTPTWFTSAAFLS 223 (341)
Q Consensus 153 ~v~~~~------~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~ 223 (341)
....+. ..+...|.+++|+|++ ++++++.|+.|++||+++++.+..+.. +.. ....|.+++|
T Consensus 171 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~------~~~~i~~i~~-- 241 (397)
T 1sq9_A 171 PTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMIN------NSNSIRSVKF-- 241 (397)
T ss_dssp CEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---C------CCCCEEEEEE--
T ss_pred CcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccc------cCCccceEEE--
Confidence 111222 2356789999999999 999999999999999999988888776 300 0256999999
Q ss_pred cCCCCEEEEEeCC---CeEEEEEcCCCCceeEEEEe-------------cCCCeEEEEEcCCCceEEEEeCCCCEEEEEC
Q 019405 224 IDDHRKFVAGTND---HQVRLYDTSAQRRPVMSFDF-------------RETPIKAVAEEPDSFNIYIGNGSGDLASVDI 287 (341)
Q Consensus 224 ~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~ 287 (341)
+|++.+|++++.| +.|++||+++++. +..+.. |...|.+++|+|++++|++++.||.|++||+
T Consensus 242 ~~~~~~l~~~~~d~~~g~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 320 (397)
T 1sq9_A 242 SPQGSLLAIAHDSNSFGCITLYETEFGER-IGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV 320 (397)
T ss_dssp CSSTTEEEEEEEETTEEEEEEEETTTCCE-EEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred CCCCCEEEEEecCCCCceEEEEECCCCcc-cceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 8899999999999 9999999998764 888888 9999999999999999999999999999999
Q ss_pred CCCeEEeEEe------cc--------------ccCceeEEEecCCC----------CEEEEEeCCCcEEEEEcCCCc
Q 019405 288 RTGKLLGCFI------GK--------------CSGSIRSIARHPTL----------PIIASCGLDSYLRFWDIKTRQ 334 (341)
Q Consensus 288 ~~~~~~~~~~------~~--------------~~~~i~~~~~~~~~----------~~l~s~~~dg~v~iwd~~~~~ 334 (341)
++++++..+. .| |...|++++|+|++ ++|++++.||.|++||+++|+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 321 KTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp TTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred CCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 9999999998 54 27899999999998 799999999999999998874
No 24
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=4.2e-39 Score=275.55 Aligned_cols=273 Identities=15% Similarity=0.123 Sum_probs=221.0
Q ss_pred ceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccc
Q 019405 40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES 119 (341)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (341)
.....+.+|...|++++|++++. +|++|+.||+|+|||+.+++....+..| ...+.++.+.+...
T Consensus 57 ~~~~~l~gH~~~V~~~~~sp~~~----~l~s~s~D~~v~iWd~~~~~~~~~~~~h--------~~~v~~~~~s~~g~--- 121 (380)
T 3iz6_a 57 VCCRTLQGHSGKVYSLDWTPEKN----WIVSASQDGRLIVWNALTSQKTHAIKLH--------CPWVMECAFAPNGQ--- 121 (380)
T ss_dssp EEEEEECCCSSCEEEEEECTTSS----CEEEEETTSEEEEEETTTTEEEEEEECC--------CTTCCCCEECTTSS---
T ss_pred EEeecccccccEEEEEEEcCCCC----EEEEEeCCCeEEEEECCCCccceEEecC--------CCCEEEEEECCCCC---
Confidence 45667899999999999998765 8999999999999999999888888764 45677777766555
Q ss_pred ccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCC-CCEEEEeeCCCeEEEEECCCCceee
Q 019405 120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDKCEKIW 198 (341)
Q Consensus 120 ~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~v~i~d~~~~~~~~ 198 (341)
.+++++.|+.+++|++.......+ .....+.+ ..|.+.+.++.|.|+ +..|++|+.|++|++||+++++.+.
T Consensus 122 -----~las~~~d~~v~iw~~~~~~~~~~-~~~~~~~~-~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~ 194 (380)
T 3iz6_a 122 -----SVACGGLDSACSIFNLSSQADRDG-NMPVSRVL-TGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRIS 194 (380)
T ss_dssp -----EEEECCSSSCCEEEECCCCSSCCC-SSTTCCBC-CCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEE
T ss_pred -----EEEEeeCCCcEEEEECCCCccccC-Cccceeec-cCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEE
Confidence 999999999999999865321110 00011112 245678889999986 4579999999999999999998877
Q ss_pred ecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeC
Q 019405 199 TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG 278 (341)
Q Consensus 199 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~ 278 (341)
.+.... ...|...|.+++|. ++++++|++|+.|++|++||++....++..+.+|...|.+++|+|++++|++|+.
T Consensus 195 ~~~~~~----~~~h~~~v~~~~~~-~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~ 269 (380)
T 3iz6_a 195 IFGSEF----PSGHTADVLSLSIN-SLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSD 269 (380)
T ss_dssp EECCCS----SSSCCSCEEEEEEC-SSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECS
T ss_pred Eeeccc----CCCCccCeEEEEee-cCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcC
Confidence 663221 11245679999994 3488999999999999999998655568889999999999999999999999999
Q ss_pred CCCEEEEECCCCeEEeEEeccc------cCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 279 SGDLASVDIRTGKLLGCFIGKC------SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 279 dg~i~iwd~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
|+.|++||+++++.+..+..+. ...|++++|+|++++|++++.||.|++||+.+++.+..+
T Consensus 270 D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~ 336 (380)
T 3iz6_a 270 DGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNL 336 (380)
T ss_dssp SSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEE
T ss_pred CCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEE
Confidence 9999999999999988876541 124899999999999999999999999999988877654
No 25
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=7.9e-38 Score=260.66 Aligned_cols=258 Identities=16% Similarity=0.222 Sum_probs=218.2
Q ss_pred ceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccc
Q 019405 40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES 119 (341)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (341)
.+..++.+|...|.+++|++++. +|++|+.||.|++|+..+++....+.. +...+.++.+.+...
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~----~l~s~~~dg~i~iw~~~~~~~~~~~~~--------h~~~v~~~~~~~~~~--- 78 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGE----WLASSSADKLIKIWGAYDGKFEKTISG--------HKLGISDVAWSSDSN--- 78 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSS----EEEEEETTSCEEEEETTTCCEEEEECC--------CSSCEEEEEECTTSS---
T ss_pred eeEEEEcccCCcEEEEEECCCCC----EEEEeeCCCeEEEEeCCCcccchhhcc--------CCCceEEEEEcCCCC---
Confidence 45567889999999999987665 899999999999999998888777765 457788888877655
Q ss_pred ccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeee
Q 019405 120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT 199 (341)
Q Consensus 120 ~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~ 199 (341)
.+++++.|+.+++|++.... .+..+. .+...|.+++|+|+++++++++.|+.|++||+++++.+..
T Consensus 79 -----~l~s~~~d~~i~vwd~~~~~--------~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 144 (312)
T 4ery_A 79 -----LLVSASDDKTLKIWDVSSGK--------CLKTLK-GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT 144 (312)
T ss_dssp -----EEEEEETTSEEEEEETTTCC--------EEEEEE-CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred -----EEEEECCCCEEEEEECCCCc--------EEEEEc-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEE
Confidence 99999999999999986433 444444 3677899999999999999999999999999999988888
Q ss_pred cCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEE-EecCCCeEEEEEcCCCceEEEEeC
Q 019405 200 AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF-DFRETPIKAVAEEPDSFNIYIGNG 278 (341)
Q Consensus 200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~g~~ 278 (341)
+..+. ..|.+++| +|++++|++++.|+.|++||+++++. +..+ ..+..++..++|+|++++|++++.
T Consensus 145 ~~~~~---------~~v~~~~~--~~~~~~l~~~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 212 (312)
T 4ery_A 145 LPAHS---------DPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQC-LKTLIDDDNPPVSFVKFSPNGKYILAATL 212 (312)
T ss_dssp ECCCS---------SCEEEEEE--CTTSSEEEEEETTSCEEEEETTTCCE-EEEECCSSCCCEEEEEECTTSSEEEEEET
T ss_pred ecCCC---------CcEEEEEE--cCCCCEEEEEeCCCcEEEEECCCCce-eeEEeccCCCceEEEEECCCCCEEEEEcC
Confidence 77654 56999999 89999999999999999999998764 4444 346678999999999999999999
Q ss_pred CCCEEEEECCCCeEEeEEeccccCceeE--EEe-cCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 279 SGDLASVDIRTGKLLGCFIGKCSGSIRS--IAR-HPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 279 dg~i~iwd~~~~~~~~~~~~~~~~~i~~--~~~-~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
|+.|++||+++++.+..+.+| ...+.. ..+ .+++.+|++++.||.|++||+++++++.++
T Consensus 213 d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~ 275 (312)
T 4ery_A 213 DNTLKLWDYSKGKCLKTYTGH-KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 275 (312)
T ss_dssp TTEEEEEETTTTEEEEEECSS-CCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEE
T ss_pred CCeEEEEECCCCcEEEEEEec-CCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhh
Confidence 999999999999999999887 443322 233 467889999999999999999999888765
No 26
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.9e-38 Score=265.97 Aligned_cols=259 Identities=16% Similarity=0.156 Sum_probs=197.5
Q ss_pred CCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccC---CCCCCCCCCceeeEeeeecccccccccc
Q 019405 47 DPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAG---DSGAQPEDDGIVGLHLFKRQREESSSRS 123 (341)
Q Consensus 47 ~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (341)
.++..+.+++|++|+. +|++++ |+++++||............+. ......++..+.++.|.+. +
T Consensus 28 ~~~~~v~~~~fs~dG~----~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~------- 94 (344)
T 4gqb_B 28 CMERQLEAARYRSDGA----LLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGE-R------- 94 (344)
T ss_dssp SCCSEEEEEEECTTSC----EEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETT-T-------
T ss_pred cccCCEEEEEECCCCC----EEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCC-C-------
Confidence 3566788999998877 666666 8888888742110000000000 0000012356777777553 4
Q ss_pred ceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCC
Q 019405 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP 203 (341)
Q Consensus 124 ~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~ 203 (341)
.+++++.||.+++|+++..+.. ...+.....|...|.+++|+|++++|++|+.|++|++||+++++.+..+..|
T Consensus 95 -~l~~~s~dg~v~lWd~~~~~~~-----~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h 168 (344)
T 4gqb_B 95 -GILVASDSGAVELWELDENETL-----IVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAH 168 (344)
T ss_dssp -EEEEEETTSEEEEEEECTTSSC-----EEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred -eEEEEECCCEEEEEeccCCCce-----eEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCc
Confidence 7899999999999999755421 1223333457889999999999999999999999999999999999988876
Q ss_pred CCCccCccCCeeeeEEEEEecCCC-CEEEEEeCCCeEEEEEcCCCCceeEEE--EecCCCeEEEEEcCC-CceEEEEeCC
Q 019405 204 PKNSLGIFTPTWFTSAAFLSIDDH-RKFVAGTNDHQVRLYDTSAQRRPVMSF--DFRETPIKAVAEEPD-SFNIYIGNGS 279 (341)
Q Consensus 204 ~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~-~~~l~~g~~d 279 (341)
. ..|.+++| ++++ .+|++++.|++|++||+++++. ...+ ..+...+.+++|+|+ +++|++|+.|
T Consensus 169 ~---------~~V~~~~~--~~~~~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~d 236 (344)
T 4gqb_B 169 A---------AQVTCVAA--SPHKDSVFLSCSEDNRILLWDTRCPKP-ASQIGCSAPGYLPTSLAWHPQQSEVFVFGDEN 236 (344)
T ss_dssp S---------SCEEEEEE--CSSCTTEEEEEETTSCEEEEETTSSSC-EEECC----CCCEEEEEECSSCTTEEEEEETT
T ss_pred C---------CceEEEEe--cCCCCCceeeeccccccccccccccce-eeeeecceeeccceeeeecCCCCcceEEeccC
Confidence 4 66999999 7776 5789999999999999998764 5544 345667999999995 5788999999
Q ss_pred CCEEEEECCCCeEEeEEeccccCceeEEEecCCC-CEEEEEeCCCcEEEEEcCCCceee
Q 019405 280 GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL-PIIASCGLDSYLRFWDIKTRQLLS 337 (341)
Q Consensus 280 g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~ 337 (341)
|.|++||+++++++..+.+| ...|++++|+|++ ++|++++.|++|+|||+++++++.
T Consensus 237 g~v~~wd~~~~~~~~~~~~h-~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~ 294 (344)
T 4gqb_B 237 GTVSLVDTKSTSCVLSSAVH-SQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR 294 (344)
T ss_dssp SEEEEEESCC--CCEEEECC-SSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE
T ss_pred CcEEEEECCCCcEEEEEcCC-CCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE
Confidence 99999999999999999998 8999999999998 589999999999999999987654
No 27
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.2e-38 Score=270.20 Aligned_cols=278 Identities=15% Similarity=0.147 Sum_probs=203.1
Q ss_pred eeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEcc------CCeEEEeeCCCCcchhee
Q 019405 18 LTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARK------NGLTDILNPLNGDLRVAI 91 (341)
Q Consensus 18 ~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~------dg~i~iw~~~~~~~~~~~ 91 (341)
+..+.+...+.|++... ....|+..|.+++||+|+. +|++|+. |+.|++|+..++.....+
T Consensus 20 ~~~~g~~~~~~w~~p~~---------~p~~H~~~V~~v~fSpDG~----~las~s~d~~~~wd~~v~~~~~~~~~~~~~~ 86 (357)
T 4g56_B 20 FQSNGSSKGSAWGRPVT---------APACMEVQIGAVRYRRDGA----LLLAASSLSSRTWGGSIWVFKDPEGAPNESL 86 (357)
T ss_dssp -----------------------------CCCSEEEEEEECSSSC----EEEEEECSSSSSCCEEEEEESSCC---CGGG
T ss_pred EecCCCccccccCCCCC---------CcccccCCEEEEEECCCCC----EEEEEcCCCCccccCeEEEEECCCCCcceeE
Confidence 34444455566665433 1235889999999998877 8999987 788999998877654333
Q ss_pred eccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEec
Q 019405 92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD 171 (341)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~ 171 (341)
... ...+...+.+++|.+. + .+++++.||.+++|++....... ....-...|...|.+++|+
T Consensus 87 ~~~----~~~~~~~V~~~~~s~d-~--------~~l~~s~dg~v~lWd~~~~~~~~-----~~~~~~~~h~~~V~~v~~s 148 (357)
T 4g56_B 87 CTA----GVQTEAGVTDVAWVSE-K--------GILVASDSGAVELWEILEKESLL-----VNKFAKYEHDDIVKTLSVF 148 (357)
T ss_dssp CSE----EEECSSCEEEEEEETT-T--------EEEEEETTSCEEEC--------C-----CCCEEECCCSSCEEEEEEC
T ss_pred ecc----cCCCCCCEEEEEEcCC-C--------CEEEEECCCEEEEeeccccceeE-----EEeeccCCCCCCEEEEEEC
Confidence 210 0024567888887654 3 67788899999999987554211 1112223467899999999
Q ss_pred CCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCC-CEEEEEeCCCeEEEEEcCCCCce
Q 019405 172 ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH-RKFVAGTNDHQVRLYDTSAQRRP 250 (341)
Q Consensus 172 ~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~ 250 (341)
|++++|++++.|+.|++||+++++.+..+..+. ..|.+++| ++++ .++++++.|++|++||+++++.
T Consensus 149 pdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~---------~~v~~v~~--s~~~~~~~~s~~~dg~v~~wd~~~~~~- 216 (357)
T 4g56_B 149 SDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHS---------SEVNCVAA--CPGKDTIFLSCGEDGRILLWDTRKPKP- 216 (357)
T ss_dssp SSSSEEEEEETTSCEEEEETTTTEEEEEECCCS---------SCEEEEEE--CTTCSSCEEEEETTSCEEECCTTSSSC-
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCC---------CCEEEEEE--ccCCCceeeeeccCCceEEEECCCCce-
Confidence 999999999999999999999999998887754 56999999 7766 4789999999999999998664
Q ss_pred eEEE--EecCCCeEEEEEcCCC-ceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCC-CEEEEEeCCCcEE
Q 019405 251 VMSF--DFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL-PIIASCGLDSYLR 326 (341)
Q Consensus 251 ~~~~--~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~dg~v~ 326 (341)
+..+ ..|...+.+++|+|++ .+|++|+.|+.|++||+++++++..+.+| ...|++++|+|++ ++|++++.|++|+
T Consensus 217 ~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~-~~~v~~l~~sp~~~~~lasgs~D~~i~ 295 (357)
T 4g56_B 217 ATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVH-SQNITGLAYSYHSSPFLASISEDCTVA 295 (357)
T ss_dssp BCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCC-SSCEEEEEECSSSSCCEEEEETTSCEE
T ss_pred eeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEecc-ceeEEEEEEcCCCCCEEEEEeCCCEEE
Confidence 3333 3466789999999975 68889999999999999999999999998 8999999999987 5799999999999
Q ss_pred EEEcCCCceeeee
Q 019405 327 FWDIKTRQLLSAV 339 (341)
Q Consensus 327 iwd~~~~~~~~~~ 339 (341)
|||+++++++..+
T Consensus 296 iwd~~~~~~~~~~ 308 (357)
T 4g56_B 296 VLDADFSEVFRDL 308 (357)
T ss_dssp EECTTSCEEEEEC
T ss_pred EEECCCCcEeEEC
Confidence 9999999887653
No 28
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.9e-37 Score=279.66 Aligned_cols=262 Identities=16% Similarity=0.235 Sum_probs=222.7
Q ss_pred ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 94 (341)
..+++++.||.+++|+.... .+..+..|...+.+++|++++. +|++++.|+.|++||. +++.+..+..
T Consensus 316 ~~l~t~~~d~~i~~w~~~~~------~~~~~~~~~~~v~~~~~s~~g~----~l~~~~~dg~v~~~~~-~~~~~~~~~~- 383 (577)
T 2ymu_A 316 QTIASASDDKTVKLWNRNGQ------HLQTLTGHSSSVWGVAFSPDGQ----TIASASDDKTVKLWNR-NGQLLQTLTG- 383 (577)
T ss_dssp SEEEEEETTSCEEEEETTSC------EEEEECCCSSCEEEEEECTTSS----EEEEEETTSEEEEEET-TCCEEEEEEC-
T ss_pred CEEEEEeCCCeEEEEeCCCC------eeEEEeCCCCCEEEEEECCCCC----EEEEEeCCCEEEEEcC-CCCEEEEecC-
Confidence 35778889999999996543 3456778999999999987766 8999999999999996 5666666665
Q ss_pred CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC
Q 019405 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (341)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~ 174 (341)
+...+.++.+.+... .+++++.|+.+++|+... ..+.... .+...|.+++|+|++
T Consensus 384 -------~~~~v~~~~~s~dg~--------~l~~~~~d~~v~~~~~~~---------~~~~~~~-~~~~~v~~~~~s~d~ 438 (577)
T 2ymu_A 384 -------HSSSVRGVAFSPDGQ--------TIASASDDKTVKLWNRNG---------QLLQTLT-GHSSSVWGVAFSPDD 438 (577)
T ss_dssp -------CSSCEEEEEECTTSS--------CEEEEETTSEEEEECTTC---------CEEEEEE-CCSSCEEEEEECTTS
T ss_pred -------CCCCeEEEEECCCCC--------EEEEEeCCCEEEEEeCCC---------CEEEEec-CCCCCeEEEEECCCC
Confidence 457788888766555 899999999999998521 2344443 467889999999999
Q ss_pred CEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEE
Q 019405 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF 254 (341)
Q Consensus 175 ~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 254 (341)
++|++++.|+.|++||. +++.+..+..+. ..|.+++| +|++++|++++.|+.|++||.. ++ .+..+
T Consensus 439 ~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~---------~~v~~~~~--spd~~~las~~~d~~i~iw~~~-~~-~~~~~ 504 (577)
T 2ymu_A 439 QTIASASDDKTVKLWNR-NGQLLQTLTGHS---------SSVRGVAF--SPDGQTIASASDDKTVKLWNRN-GQ-LLQTL 504 (577)
T ss_dssp SEEEEEETTSEEEEEET-TSCEEEEEECCS---------SCEEEEEE--CTTSCEEEEEETTSEEEEEETT-SC-EEEEE
T ss_pred CEEEEEcCCCEEEEEEC-CCCEEEEEcCCC---------CCEEEEEE--cCCCCEEEEEeCCCEEEEEcCC-CC-EEEEE
Confidence 99999999999999996 556666666543 56999999 8999999999999999999964 34 48889
Q ss_pred EecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEE
Q 019405 255 DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWD 329 (341)
Q Consensus 255 ~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd 329 (341)
.+|...|++++|+|++++|++++.|+.|++||. +++++..+.+| .+.|++++|+||+++|++++.|+.|++||
T Consensus 505 ~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h-~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 505 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH-SSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp ECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECC-SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred eCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCC-CCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 999999999999999999999999999999996 68899999998 99999999999999999999999999997
No 29
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1e-37 Score=257.96 Aligned_cols=250 Identities=12% Similarity=0.088 Sum_probs=199.4
Q ss_pred eccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCC--cchheeeccCCCCCCCCCCceeeEeeeecc-ccccc
Q 019405 44 RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG--DLRVAISNAGDSGAQPEDDGIVGLHLFKRQ-REESS 120 (341)
Q Consensus 44 ~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 120 (341)
.+.+|...|.+++|++++. +|++|+.|++|+|||+.++ +.+.++.. |.+++.++.|.++. +.
T Consensus 4 ~~~~h~~~V~~~~~s~~g~----~las~s~D~~v~iw~~~~~~~~~~~~l~g--------H~~~V~~v~~s~~~~g~--- 68 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGK----RMATCSSDKTIKIFEVEGETHKLIDTLTG--------HEGPVWRVDWAHPKFGT--- 68 (297)
T ss_dssp ECCSCSSCEEEEEECTTSS----EEEEEETTSCEEEEEBCSSCBCCCEEECC--------CSSCEEEEEECCGGGCS---
T ss_pred eccCCcCceEEEEECCCCC----EEEEEeCCCEEEEEecCCCCcEEEEEEcc--------ccCCeEEEEecCCCcCC---
Confidence 5678999999999987766 8999999999999999743 45556655 55788888886542 22
Q ss_pred cccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCC--CCEEEEeeCCCeEEEEECCCCce--
Q 019405 121 SRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS--EKFSLFGGKGVEVNVWDLDKCEK-- 196 (341)
Q Consensus 121 ~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~v~i~d~~~~~~-- 196 (341)
.|++++.|+++++|+++.... ..+..+. .|...|.+++|+|+ +.+|++++.|+.|++||++++..
T Consensus 69 ----~l~s~s~D~~v~iWd~~~~~~------~~~~~~~-~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~ 137 (297)
T 2pm7_B 69 ----ILASCSYDGKVMIWKEENGRW------SQIAVHA-VHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS 137 (297)
T ss_dssp ----EEEEEETTTEEEEEEBSSSCB------CCCEEEC-CCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBC
T ss_pred ----EEEEEcCCCEEEEEEcCCCce------EEEEEee-cCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCcee
Confidence 899999999999999864321 1222322 36678999999997 88999999999999999987532
Q ss_pred eeecCCCCCCccCccCCeeeeEEEEEecCC-------------CCEEEEEeCCCeEEEEEcCCCCc---eeEEEEecCCC
Q 019405 197 IWTAKPPPKNSLGIFTPTWFTSAAFLSIDD-------------HRKFVAGTNDHQVRLYDTSAQRR---PVMSFDFRETP 260 (341)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------------~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~ 260 (341)
...+.. |...|.+++| +|+ +++|++++.|++|++||+++.+. ....+.+|...
T Consensus 138 ~~~~~~---------h~~~v~~~~~--~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~ 206 (297)
T 2pm7_B 138 PIIIDA---------HAIGVNSASW--APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW 206 (297)
T ss_dssp CEEEEC---------CSSCEEEEEE--CCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC
T ss_pred eeeeec---------ccCccceEee--cCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCc
Confidence 222333 3466999999 664 57999999999999999987552 35677889999
Q ss_pred eEEEEEcCCC---ceEEEEeCCCCEEEEECCCCe---EEeEE--eccccCceeEEEecCCCCEEEEEeCCCcEEEEEcC
Q 019405 261 IKAVAEEPDS---FNIYIGNGSGDLASVDIRTGK---LLGCF--IGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331 (341)
Q Consensus 261 v~~~~~~~~~---~~l~~g~~dg~i~iwd~~~~~---~~~~~--~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~ 331 (341)
|.+++|+|++ .+|++++.|+.|++||+++.. ....+ ..| ...|.+++|+|++++|++++.|+.|++|+..
T Consensus 207 V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 207 VRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF-PDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCC-SSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred eEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccC-CCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 9999999984 899999999999999998642 12222 345 7899999999999999999999999999987
No 30
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-37 Score=260.94 Aligned_cols=283 Identities=12% Similarity=0.125 Sum_probs=235.5
Q ss_pred ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 94 (341)
-.+++++.||.|++|++.+. +.+..+..|...+.+++|++++. +|++++.||.|++||+.+++.+..+..
T Consensus 45 ~~l~~~~~dg~i~vwd~~~~-----~~~~~~~~h~~~v~~~~~~~~~~----~l~s~~~dg~i~iwd~~~~~~~~~~~~- 114 (369)
T 3zwl_B 45 DLLFSCSKDSSASVWYSLNG-----ERLGTLDGHTGTIWSIDVDCFTK----YCVTGSADYSIKLWDVSNGQCVATWKS- 114 (369)
T ss_dssp CEEEEEESSSCEEEEETTTC-----CEEEEECCCSSCEEEEEECTTSS----EEEEEETTTEEEEEETTTCCEEEEEEC-
T ss_pred CEEEEEeCCCEEEEEeCCCc-----hhhhhhhhcCCcEEEEEEcCCCC----EEEEEeCCCeEEEEECCCCcEEEEeec-
Confidence 35788889999999998876 66778888999999999987665 899999999999999999988777763
Q ss_pred CCCCCCCCCCceeeEeeeeccccccccccceeEEEccc-----ceeEEEEeeeccccc---ccCCceEEEEEe-ecCCce
Q 019405 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK-----GKASMRSIEVTKVSA---ESSCSTVKSWNV-CASGTI 165 (341)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----g~~~i~~~~~~~~~~---~~~~~~v~~~~~-~~~~~i 165 (341)
...+.++.+.+... .+++++.+ +.+.+|++....... ......+..... .....+
T Consensus 115 --------~~~v~~~~~~~~~~--------~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (369)
T 3zwl_B 115 --------PVPVKRVEFSPCGN--------YFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAA 178 (369)
T ss_dssp --------SSCEEEEEECTTSS--------EEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCE
T ss_pred --------CCCeEEEEEccCCC--------EEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccce
Confidence 26678888776655 88888888 999999998764321 001112222221 112389
Q ss_pred EEEEecCCCCEEEEeeCCCeEEEEECCC-CceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEc
Q 019405 166 AFSKVDISEKFSLFGGKGVEVNVWDLDK-CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDT 244 (341)
Q Consensus 166 ~~~~~~~~~~~l~~~~~d~~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~ 244 (341)
.+++|+|+++++++++.||.|++||+++ .+....+..+. ..|.+++| +|++++|++++.|+.|++||+
T Consensus 179 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------~~v~~~~~--~~~~~~l~~~~~d~~i~v~d~ 247 (369)
T 3zwl_B 179 TVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHE---------KSISDMQF--SPDLTYFITSSRDTNSFLVDV 247 (369)
T ss_dssp EEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCS---------SCEEEEEE--CTTSSEEEEEETTSEEEEEET
T ss_pred eEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCC---------CceeEEEE--CCCCCEEEEecCCceEEEEEC
Confidence 9999999999999999999999999998 67777666643 56999999 899999999999999999999
Q ss_pred CCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCC--------------CEEEEECCCCeEEeEEeccccCceeEEEec
Q 019405 245 SAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG--------------DLASVDIRTGKLLGCFIGKCSGSIRSIARH 310 (341)
Q Consensus 245 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg--------------~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~ 310 (341)
++++. +..+. +...+..++|+|+++++++++.++ .+++||..+++.+..+.+| ...|++++|+
T Consensus 248 ~~~~~-~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~v~~~~~s 324 (369)
T 3zwl_B 248 STLQV-LKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGH-FGPLNTVAIS 324 (369)
T ss_dssp TTCCE-EEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECC-SSCEEEEEEC
T ss_pred CCCce-eeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecc-cCcEEEEEEC
Confidence 98764 66665 778999999999999999999988 8999999999999999998 8999999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCceee
Q 019405 311 PTLPIIASCGLDSYLRFWDIKTRQLLS 337 (341)
Q Consensus 311 ~~~~~l~s~~~dg~v~iwd~~~~~~~~ 337 (341)
|++++|++++.||.|++|+++++....
T Consensus 325 ~~~~~l~s~~~dg~v~iw~~~~~~~~~ 351 (369)
T 3zwl_B 325 PQGTSYASGGEDGFIRLHHFEKSYFDF 351 (369)
T ss_dssp TTSSEEEEEETTSEEEEEEECHHHHTC
T ss_pred CCCCEEEEEcCCCeEEEEECccccchh
Confidence 999999999999999999998765443
No 31
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.5e-37 Score=278.93 Aligned_cols=281 Identities=19% Similarity=0.264 Sum_probs=235.1
Q ss_pred ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 94 (341)
..+++++.||.+++|+... +.+..+.+|...+..++|++++. +|++++.|+.|++|+. +++.+..+..
T Consensus 234 ~~l~~~~~d~~i~~w~~~~------~~~~~~~~~~~~v~~v~~~~d~~----~l~~~~~d~~i~~w~~-~~~~~~~~~~- 301 (577)
T 2ymu_A 234 QTIASASDDKTVKLWNRNG------QLLQTLTGHSSSVNGVAFRPDGQ----TIASASDDKTVKLWNR-NGQLLQTLTG- 301 (577)
T ss_dssp SCEEEEETTSCEEEECTTS------CEEEEECCCSSCEEEEEECTTSS----EEEEEETTSCEEEEET-TSCEEEEECC-
T ss_pred CEEEEEeCCCEEEEEeCCC------CEEEEEecCCCCEEEEEEcCCCC----EEEEEeCCCEEEEEeC-CCcEEEEEec-
Confidence 3467888899999998432 45667888999999999987665 8999999999999997 4566666554
Q ss_pred CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeeccc----------------------ccccCCc
Q 019405 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV----------------------SAESSCS 152 (341)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~----------------------~~~~~~~ 152 (341)
+...+.++.+.+... .+++++.|+.+++|++..... +++..++
T Consensus 302 -------h~~~v~~~~~~~~~~--------~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg 366 (577)
T 2ymu_A 302 -------HSSSVWGVAFSPDGQ--------TIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDK 366 (577)
T ss_dssp -------CSSCEEEEEECTTSS--------EEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred -------CCCCeEEEEECCCCC--------EEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCC
Confidence 457788887766555 899999999999998643211 2456788
Q ss_pred eEEEEEee---------cCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEe
Q 019405 153 TVKSWNVC---------ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS 223 (341)
Q Consensus 153 ~v~~~~~~---------~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 223 (341)
.+++|+.. +...|.+++|+|++++|++++.|+.|++||. +++.+..+..+. ..|.+++|
T Consensus 367 ~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~---------~~v~~~~~-- 434 (577)
T 2ymu_A 367 TVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS---------SSVWGVAF-- 434 (577)
T ss_dssp EEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCS---------SCEEEEEE--
T ss_pred EEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCC---------CCeEEEEE--
Confidence 89998753 3467899999999999999999999999995 566666666543 56999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCc
Q 019405 224 IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGS 303 (341)
Q Consensus 224 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~ 303 (341)
+|++++|++++.|+.|++||... + .+..+..|...|++++|+|++++|++++.|+.|++||. +++++..+.+| ...
T Consensus 435 s~d~~~l~~~~~d~~v~~w~~~~-~-~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h-~~~ 510 (577)
T 2ymu_A 435 SPDDQTIASASDDKTVKLWNRNG-Q-LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH-SSS 510 (577)
T ss_dssp CTTSSEEEEEETTSEEEEEETTS-C-EEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECC-SSC
T ss_pred CCCCCEEEEEcCCCEEEEEECCC-C-EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCC-CCC
Confidence 89999999999999999999754 4 47888999999999999999999999999999999995 68899999998 899
Q ss_pred eeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 304 IRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 304 i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
|++++|+|++++|++++.|+.|++||. +++++.++
T Consensus 511 v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~ 545 (577)
T 2ymu_A 511 VRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL 545 (577)
T ss_dssp EEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEE
T ss_pred EEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEE
Confidence 999999999999999999999999996 57777765
No 32
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3e-37 Score=266.09 Aligned_cols=276 Identities=16% Similarity=0.181 Sum_probs=222.9
Q ss_pred ceeeeecCCCCeEEEEEecCccCccceeeeccC-CCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeec
Q 019405 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGD-PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN 93 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 93 (341)
..+++++.||.|++|++... +....+.. |...+.+++|++++. +|++|+.||.|++||+.+++.+..+..
T Consensus 104 ~~l~~~~~d~~v~lw~~~~~-----~~~~~~~~~~~~~v~~v~~s~~~~----~l~~~~~dg~i~iwd~~~~~~~~~~~~ 174 (401)
T 4aez_A 104 LNVVAVALERNVYVWNADSG-----SVSALAETDESTYVASVKWSHDGS----FLSVGLGNGLVDIYDVESQTKLRTMAG 174 (401)
T ss_dssp TSEEEEEETTEEEEEETTTC-----CEEEEEECCTTCCEEEEEECTTSS----EEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred CCEEEEECCCeEEEeeCCCC-----cEeEeeecCCCCCEEEEEECCCCC----EEEEECCCCeEEEEECcCCeEEEEecC
Confidence 45788999999999999875 33334433 788999999988665 899999999999999999988877765
Q ss_pred cCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCC
Q 019405 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS 173 (341)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~ 173 (341)
+...+.++.+ ... .+++++.||.+.+|++.... ..+..+. .+...|.+++|+|+
T Consensus 175 --------~~~~v~~~~~--~~~--------~l~~~~~dg~i~i~d~~~~~-------~~~~~~~-~~~~~v~~~~~~~~ 228 (401)
T 4aez_A 175 --------HQARVGCLSW--NRH--------VLSSGSRSGAIHHHDVRIAN-------HQIGTLQ-GHSSEVCGLAWRSD 228 (401)
T ss_dssp --------CSSCEEEEEE--ETT--------EEEEEETTSEEEEEETTSSS-------CEEEEEE-CCSSCEEEEEECTT
T ss_pred --------CCCceEEEEE--CCC--------EEEEEcCCCCEEEEecccCc-------ceeeEEc-CCCCCeeEEEEcCC
Confidence 4577888877 223 89999999999999986322 1344443 46789999999999
Q ss_pred CCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCC-CEEEEEe--CCCeEEEEEcCCCCce
Q 019405 174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH-RKFVAGT--NDHQVRLYDTSAQRRP 250 (341)
Q Consensus 174 ~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~--~d~~i~iwd~~~~~~~ 250 (341)
+++|++++.|+.|++||+++++....+..+. ..|.+++| +|++ .++++++ .|+.|++||+++++.
T Consensus 229 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~---------~~v~~~~~--~p~~~~ll~~~~gs~d~~i~i~d~~~~~~- 296 (401)
T 4aez_A 229 GLQLASGGNDNVVQIWDARSSIPKFTKTNHN---------AAVKAVAW--CPWQSNLLATGGGTMDKQIHFWNAATGAR- 296 (401)
T ss_dssp SSEEEEEETTSCEEEEETTCSSEEEEECCCS---------SCCCEEEE--CTTSTTEEEEECCTTTCEEEEEETTTCCE-
T ss_pred CCEEEEEeCCCeEEEccCCCCCccEEecCCc---------ceEEEEEE--CCCCCCEEEEecCCCCCEEEEEECCCCCE-
Confidence 9999999999999999999988888776653 56999999 7755 5566654 799999999998764
Q ss_pred eEEEEecCCCeEEEEEcCCCceEEE--EeCCCCEEEEECCCCeEEe--EEeccccCceeEEEecCCCCEEEEEeCCCcEE
Q 019405 251 VMSFDFRETPIKAVAEEPDSFNIYI--GNGSGDLASVDIRTGKLLG--CFIGKCSGSIRSIARHPTLPIIASCGLDSYLR 326 (341)
Q Consensus 251 ~~~~~~~~~~v~~~~~~~~~~~l~~--g~~dg~i~iwd~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~ 326 (341)
+..+. +...|.+++|+|++++|++ |+.||.|++||+.+++... .+.+| ...|.+++|+|++++|++++.||.|+
T Consensus 297 ~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h-~~~v~~~~~s~dg~~l~s~~~dg~i~ 374 (401)
T 4aez_A 297 VNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAH-DTRVLYSALSPDGRILSTAASDENLK 374 (401)
T ss_dssp EEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECC-SSCCCEEEECTTSSEEEEECTTSEEE
T ss_pred EEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCC-CCCEEEEEECCCCCEEEEEeCCCcEE
Confidence 66665 6678999999999999998 5589999999999876544 46677 89999999999999999999999999
Q ss_pred EEEcCCCceeeee
Q 019405 327 FWDIKTRQLLSAV 339 (341)
Q Consensus 327 iwd~~~~~~~~~~ 339 (341)
+||+.+++.+.+.
T Consensus 375 iw~~~~~~~~~~~ 387 (401)
T 4aez_A 375 FWRVYDGDHVKRP 387 (401)
T ss_dssp EEECCC-------
T ss_pred EEECCCCcccccc
Confidence 9999999877653
No 33
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=3.5e-38 Score=268.29 Aligned_cols=288 Identities=15% Similarity=0.218 Sum_probs=227.7
Q ss_pred ceeeeecCCCCeEEEEEecCccCccceeeecc--CCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheee
Q 019405 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWG--DPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS 92 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 92 (341)
..+++++.+|.|++|++... +....+..+. .|...+.+++|+++..+.+++|++|+.||.|++||+.+++.+..+.
T Consensus 35 ~~~~~~~~~~~v~vw~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~ 112 (366)
T 3k26_A 35 PLVFATVGSNRVTLYECHSQ--GEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYV 112 (366)
T ss_dssp CEEEEEEETTEEEEEEECGG--GCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEE
T ss_pred ceEEEECCCCEEEEEEcCCC--cEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeec
Confidence 34777777889999999875 2112222222 3678899999999988778899999999999999999998888777
Q ss_pred ccCCCCCCCCCCceeeEeeee-ccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEE--eecCCceEEEE
Q 019405 93 NAGDSGAQPEDDGIVGLHLFK-RQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN--VCASGTIAFSK 169 (341)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~--~~~~~~i~~~~ 169 (341)
. +...+.++.+.+ ... .+++++.||.+.+|++.... .+..+. ..+...|.+++
T Consensus 113 ~--------~~~~i~~~~~~~~~~~--------~l~s~~~dg~i~iwd~~~~~--------~~~~~~~~~~~~~~v~~~~ 168 (366)
T 3k26_A 113 G--------HGNAINELKFHPRDPN--------LLLSVSKDHALRLWNIQTDT--------LVAIFGGVEGHRDEVLSAD 168 (366)
T ss_dssp S--------CCSCEEEEEECSSCTT--------EEEEEETTSCEEEEETTTTE--------EEEEECSTTSCSSCEEEEE
T ss_pred C--------CCCcEEEEEECCCCCC--------EEEEEeCCCeEEEEEeecCe--------EEEEecccccccCceeEEE
Confidence 5 457888888877 444 89999999999999986433 444442 24678999999
Q ss_pred ecCCCCEEEEeeCCCeEEEEECCCCceeeecCCC-------------------CCCccCccCCeeeeEEEEEecCCCCEE
Q 019405 170 VDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP-------------------PKNSLGIFTPTWFTSAAFLSIDDHRKF 230 (341)
Q Consensus 170 ~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-------------------~~~~~~~~~~~~v~~~~~~~~~~~~~l 230 (341)
|+|++++|++++.|+.|++||+++++....+... ........|...|.+++| + ++++
T Consensus 169 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~--~~~l 244 (366)
T 3k26_A 169 YDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRW--L--GDLI 244 (366)
T ss_dssp ECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEE--E--TTEE
T ss_pred ECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEE--c--CCEE
Confidence 9999999999999999999999987654333210 000001115577999999 4 7799
Q ss_pred EEEeCCCeEEEEEcCCCCc-------------eeEEEEecCCCeEEEEEcCC--CceEEEEeCCCCEEEEECCCCe----
Q 019405 231 VAGTNDHQVRLYDTSAQRR-------------PVMSFDFRETPIKAVAEEPD--SFNIYIGNGSGDLASVDIRTGK---- 291 (341)
Q Consensus 231 ~~~~~d~~i~iwd~~~~~~-------------~~~~~~~~~~~v~~~~~~~~--~~~l~~g~~dg~i~iwd~~~~~---- 291 (341)
++++.|+.|++||+++... .+..+..|...|++++|+|+ +++|++|+.||.|++||+.+++
T Consensus 245 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 324 (366)
T 3k26_A 245 LSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKA 324 (366)
T ss_dssp EEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGC
T ss_pred EEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccc
Confidence 9999999999999987532 36777889999999999999 9999999999999999999875
Q ss_pred EEeEEecc-ccCceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405 292 LLGCFIGK-CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (341)
Q Consensus 292 ~~~~~~~~-~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 332 (341)
....+..| +...|++++|+|++++|++++.||.|++||+.+
T Consensus 325 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 325 KCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred cceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 34466665 258999999999999999999999999999863
No 34
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.2e-37 Score=284.91 Aligned_cols=276 Identities=11% Similarity=0.100 Sum_probs=223.6
Q ss_pred ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 94 (341)
..+++++.||.|++|++.............+.+|...|.+++|++++. +|++|+.||+|+|||+.+++....+..
T Consensus 396 ~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~----~l~sgs~Dg~v~vwd~~~~~~~~~~~~- 470 (694)
T 3dm0_A 396 DIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQ----FALSGSWDGELRLWDLAAGVSTRRFVG- 470 (694)
T ss_dssp SEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSS----EEEEEETTSEEEEEETTTTEEEEEEEC-
T ss_pred CEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCC----EEEEEeCCCcEEEEECCCCcceeEEeC-
Confidence 458899999999999998752221234457888999999999988766 899999999999999999988887776
Q ss_pred CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEE--eecCCceEEEEecC
Q 019405 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN--VCASGTIAFSKVDI 172 (341)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~--~~~~~~i~~~~~~~ 172 (341)
|...+.++.+.+... .+++++.|+++++|++.... ...+.. ..|...|.+++|+|
T Consensus 471 -------h~~~v~~~~~s~~~~--------~l~s~s~D~~i~iwd~~~~~--------~~~~~~~~~~h~~~v~~~~~~~ 527 (694)
T 3dm0_A 471 -------HTKDVLSVAFSLDNR--------QIVSASRDRTIKLWNTLGEC--------KYTISEGGEGHRDWVSCVRFSP 527 (694)
T ss_dssp -------CSSCEEEEEECTTSS--------CEEEEETTSCEEEECTTSCE--------EEEECSSTTSCSSCEEEEEECS
T ss_pred -------CCCCEEEEEEeCCCC--------EEEEEeCCCEEEEEECCCCc--------ceeeccCCCCCCCcEEEEEEeC
Confidence 457788888877665 89999999999999964221 111111 13556799999999
Q ss_pred CC--CEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCce
Q 019405 173 SE--KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP 250 (341)
Q Consensus 173 ~~--~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 250 (341)
++ ..+++++.|+.|++||+++++....+..|. ..|.+++| +|++++|++++.|+.|++||+++++.
T Consensus 528 ~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~---------~~v~~v~~--spdg~~l~sg~~Dg~i~iwd~~~~~~- 595 (694)
T 3dm0_A 528 NTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHT---------GYVSTVAV--SPDGSLCASGGKDGVVLLWDLAEGKK- 595 (694)
T ss_dssp CSSSCEEEEEETTSCEEEEETTTCCEEEEECCCS---------SCEEEEEE--CTTSSEEEEEETTSBCEEEETTTTEE-
T ss_pred CCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCC---------CCEEEEEE--eCCCCEEEEEeCCCeEEEEECCCCce-
Confidence 86 689999999999999999998888877654 66999999 89999999999999999999998764
Q ss_pred eEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEecccc------------------CceeEEEecCC
Q 019405 251 VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCS------------------GSIRSIARHPT 312 (341)
Q Consensus 251 ~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~------------------~~i~~~~~~~~ 312 (341)
+..+. +...|.+++|+|++.+|++++ ++.|++||+++++.+..+..+.. ..+++++|+|+
T Consensus 596 ~~~~~-~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spd 673 (694)
T 3dm0_A 596 LYSLE-ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSAD 673 (694)
T ss_dssp EECCB-CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTT
T ss_pred EEEec-CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCC
Confidence 55554 456899999999998877765 56699999999998877754311 13788999999
Q ss_pred CCEEEEEeCCCcEEEEEcCC
Q 019405 313 LPIIASCGLDSYLRFWDIKT 332 (341)
Q Consensus 313 ~~~l~s~~~dg~v~iwd~~~ 332 (341)
+++|++|+.||.|++||+..
T Consensus 674 g~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 674 GSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp SSEEEEEETTSEEEEEEC--
T ss_pred CCEEEEEcCCCeEEEEeccC
Confidence 99999999999999999863
No 35
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.6e-37 Score=260.16 Aligned_cols=259 Identities=12% Similarity=0.077 Sum_probs=208.2
Q ss_pred ceeeeccCCCC-CceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccc
Q 019405 40 KVVERWGDPHS-SNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREE 118 (341)
Q Consensus 40 ~~~~~~~~~~~-~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (341)
+++.++.+|.. .+.+++|++++. +||+|+.|++|+|||++++......... ..|.+.+.++.+.+...
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g~----~las~~~D~~i~iw~~~~~~~~~~~~~~-----~~h~~~v~~~~~sp~g~-- 74 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAGT----LLASCGGDRRIRIWGTEGDSWICKSVLS-----EGHQRTVRKVAWSPCGN-- 74 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTSS----CEEEEETTSCEEEEEEETTEEEEEEEEC-----SSCSSCEEEEEECTTSS--
T ss_pred EEeeeecCCCCCcEEEEEECCCCC----EEEEEcCCCeEEEEEcCCCcceeeeeec-----cccCCcEEEEEECCCCC--
Confidence 45667878877 889999987766 8999999999999999876543222110 13567888888877655
Q ss_pred cccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCce--
Q 019405 119 SSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK-- 196 (341)
Q Consensus 119 ~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~-- 196 (341)
.|++++.|+.+++|++..... ..+..+. .|...|.+++|+|++++|++++.|+.|++||++++..
T Consensus 75 ------~l~s~s~D~~v~iw~~~~~~~------~~~~~~~-~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~ 141 (345)
T 3fm0_A 75 ------YLASASFDATTCIWKKNQDDF------ECVTTLE-GHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYE 141 (345)
T ss_dssp ------EEEEEETTSCEEEEEECCC-E------EEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEE
T ss_pred ------EEEEEECCCcEEEEEccCCCe------EEEEEcc-CCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeE
Confidence 999999999999999854321 1233333 4678899999999999999999999999999987643
Q ss_pred -eeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCc-eeEEEEecCCCeEEEEEcCCCceEE
Q 019405 197 -IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR-PVMSFDFRETPIKAVAEEPDSFNIY 274 (341)
Q Consensus 197 -~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~ 274 (341)
+..+..+ ...|.+++| +|++.+|++++.|++|++||.+..+. ....+.+|...|++++|+|++++|+
T Consensus 142 ~~~~~~~h---------~~~v~~~~~--~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~ 210 (345)
T 3fm0_A 142 CVSVLNSH---------TQDVKHVVW--HPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLA 210 (345)
T ss_dssp EEEEECCC---------CSCEEEEEE--CSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred EEEEecCc---------CCCeEEEEE--CCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEE
Confidence 3344443 356999999 89999999999999999999987542 3567888999999999999999999
Q ss_pred EEeCCCCEEEEECCC---------------CeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCC
Q 019405 275 IGNGSGDLASVDIRT---------------GKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR 333 (341)
Q Consensus 275 ~g~~dg~i~iwd~~~---------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 333 (341)
+|+.|+.|++||... .+++..+.+.|...|++++|+|++..|++++.|+.|++|+...+
T Consensus 211 s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~ 284 (345)
T 3fm0_A 211 SCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPN 284 (345)
T ss_dssp EEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTT
T ss_pred EEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCC
Confidence 999999999999632 23455666645889999999999999999999999999998764
No 36
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.2e-37 Score=264.03 Aligned_cols=282 Identities=11% Similarity=0.071 Sum_probs=227.2
Q ss_pred ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 94 (341)
-.+++++.+|.|++|++... .++.+..+.+|...+.+++|++++. +|++++.||.|++||+++++....+...
T Consensus 21 ~~l~~~~~d~~v~i~~~~~~---~~~~~~~~~~h~~~v~~~~~~~~~~----~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 93 (372)
T 1k8k_C 21 TQIAICPNNHEVHIYEKSGN---KWVQVHELKEHNGQVTGVDWAPDSN----RIVTCGTDRNAYVWTLKGRTWKPTLVIL 93 (372)
T ss_dssp SEEEEECSSSEEEEEEEETT---EEEEEEEEECCSSCEEEEEEETTTT----EEEEEETTSCEEEEEEETTEEEEEEECC
T ss_pred CEEEEEeCCCEEEEEeCCCC---cEEeeeeecCCCCcccEEEEeCCCC----EEEEEcCCCeEEEEECCCCeeeeeEEee
Confidence 34677889999999999875 1226678888999999999998665 8999999999999999887655444321
Q ss_pred CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC
Q 019405 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (341)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~ 174 (341)
.+...+.++.+.+... .+++++.++.+.+|++..... ..........+...|.+++|+|++
T Consensus 94 ------~~~~~v~~~~~~~~~~--------~l~~~~~d~~v~i~d~~~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~ 154 (372)
T 1k8k_C 94 ------RINRAARCVRWAPNEK--------KFAVGSGSRVISICYFEQEND-----WWVCKHIKKPIRSTVLSLDWHPNS 154 (372)
T ss_dssp ------CCSSCEEEEEECTTSS--------EEEEEETTSSEEEEEEETTTT-----EEEEEEECTTCCSCEEEEEECTTS
T ss_pred ------cCCCceeEEEECCCCC--------EEEEEeCCCEEEEEEecCCCc-----ceeeeeeecccCCCeeEEEEcCCC
Confidence 3457788888876655 899999999999999975431 112333334457789999999999
Q ss_pred CEEEEeeCCCeEEEEECC------------------CCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCC
Q 019405 175 KFSLFGGKGVEVNVWDLD------------------KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND 236 (341)
Q Consensus 175 ~~l~~~~~d~~v~i~d~~------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 236 (341)
+++++++.|+.|++||++ .++.+..+..+ ...+.+++| +|++++|++++.|
T Consensus 155 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~v~~~~~--~~~~~~l~~~~~d 223 (372)
T 1k8k_C 155 VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS---------CGWVHGVCF--SANGSRVAWVSHD 223 (372)
T ss_dssp SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC---------SSCEEEEEE--CSSSSEEEEEETT
T ss_pred CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCC---------CCeEEEEEE--CCCCCEEEEEeCC
Confidence 999999999999999964 45555555543 366999999 8899999999999
Q ss_pred CeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCC--CeE--E-------------------
Q 019405 237 HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT--GKL--L------------------- 293 (341)
Q Consensus 237 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~--~~~--~------------------- 293 (341)
+.|++||+++++ ++..+..|..+|.+++|+|++.+|++| .|+.|++|++.+ ++. +
T Consensus 224 ~~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (372)
T 1k8k_C 224 STVCLADADKKM-AVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARER 301 (372)
T ss_dssp TEEEEEEGGGTT-EEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHH
T ss_pred CEEEEEECCCCc-eeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhh
Confidence 999999999876 488899999999999999999988887 899999999987 431 1
Q ss_pred -----------------eEEe-ccccCceeEEEec-CCC---CEEEEEeCCCcEEEEEcCCCcee
Q 019405 294 -----------------GCFI-GKCSGSIRSIARH-PTL---PIIASCGLDSYLRFWDIKTRQLL 336 (341)
Q Consensus 294 -----------------~~~~-~~~~~~i~~~~~~-~~~---~~l~s~~~dg~v~iwd~~~~~~~ 336 (341)
..+. +| ...|++++|+ +++ .+|++++.||.|++||+++++.+
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~~ 365 (372)
T 1k8k_C 302 FQNLDKKASSEGSAAAGAGLDSLH-KNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESA 365 (372)
T ss_dssp HHHCCCCC---------CCCSSSS-SSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHH
T ss_pred hhhcccccccccCccccccccccc-cCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhHh
Confidence 2333 66 8899999976 666 89999999999999999886543
No 37
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=8e-37 Score=255.19 Aligned_cols=255 Identities=13% Similarity=0.163 Sum_probs=210.0
Q ss_pred ceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCc-----chheeeccCCCCCCCCCCceeeEeeeec
Q 019405 40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD-----LRVAISNAGDSGAQPEDDGIVGLHLFKR 114 (341)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (341)
.+..++.+|...|.+++|+++.. ++|++|+.|++|++|++.... .+..+.. |...+.++.+.+.
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~~~---~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~--------h~~~v~~~~~s~d 76 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAGQP---NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKG--------HSHIVQDCTLTAD 76 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSSCT---TEEEEEETTSEEEEEEEEEETTEEEEEEEEEEC--------CSSCEEEEEECTT
T ss_pred EEEEEEccccceEEEEEccCCCc---cEEEEecCCccEEEecCCCCCccccccceEEeC--------CcccEEEEEECCC
Confidence 45567889999999999987542 379999999999999986432 2344444 4577888877666
Q ss_pred cccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCC
Q 019405 115 QREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC 194 (341)
Q Consensus 115 ~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~ 194 (341)
.. .+++++.|+++++|++.... .+..+. .|...|.+++|+|++.++++++.|++|++||++ +
T Consensus 77 g~--------~l~s~s~D~~v~~wd~~~~~--------~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~ 138 (319)
T 3frx_A 77 GA--------YALSASWDKTLRLWDVATGE--------TYQRFV-GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-G 138 (319)
T ss_dssp SS--------EEEEEETTSEEEEEETTTTE--------EEEEEE-CCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-S
T ss_pred CC--------EEEEEeCCCEEEEEECCCCC--------eeEEEc-cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-C
Confidence 55 99999999999999986443 344444 467899999999999999999999999999996 4
Q ss_pred ceeeecCCCCCCccCccCCeeeeEEEEEecC------CCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcC
Q 019405 195 EKIWTAKPPPKNSLGIFTPTWFTSAAFLSID------DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEP 268 (341)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 268 (341)
+.+..+..+ ...|.++.| .| ++..+++++.|+.|++||+++.+. ...+.+|...|.+++|+|
T Consensus 139 ~~~~~~~~h---------~~~v~~~~~--~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~h~~~v~~~~~sp 206 (319)
T 3frx_A 139 QCLATLLGH---------NDWVSQVRV--VPNEKADDDSVTIISAGNDKMVKAWNLNQFQI-EADFIGHNSNINTLTASP 206 (319)
T ss_dssp CEEEEECCC---------SSCEEEEEE--CCC------CCEEEEEETTSCEEEEETTTTEE-EEEECCCCSCEEEEEECT
T ss_pred CeEEEEecc---------CCcEEEEEE--ccCCCCCCCccEEEEEeCCCEEEEEECCcchh-heeecCCCCcEEEEEEcC
Confidence 455555554 366899999 55 345899999999999999998654 778889999999999999
Q ss_pred CCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeee
Q 019405 269 DSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSA 338 (341)
Q Consensus 269 ~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 338 (341)
++++|++|+.|+.|++||+.+++.+..+..+ ..|.+++|+|++.+|++++.+ .+++|++..+..+..
T Consensus 207 ~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~ 273 (319)
T 3frx_A 207 DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ--DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDD 273 (319)
T ss_dssp TSSEEEEEETTCEEEEEETTTTEEEEEEECC--SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEecCC--CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeec
Confidence 9999999999999999999999999988864 689999999999999988765 599999988766544
No 38
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-36 Score=255.70 Aligned_cols=261 Identities=11% Similarity=0.077 Sum_probs=201.1
Q ss_pred ceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCc--chheeeccCCCCCCCCCCceeeEeeeecccc
Q 019405 40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD--LRVAISNAGDSGAQPEDDGIVGLHLFKRQRE 117 (341)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (341)
+++..+.+|...|.+++|+++ +|++|+.|++|+|||+.++. ....+.. ..|.+.+.++.+.+...
T Consensus 5 ~~~~~~~~h~~~v~~~~~s~~------~las~~~D~~i~lw~~~~~~~~~~~~~~~------~~h~~~v~~v~~sp~~~- 71 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDFSQG------ILATGSTDRKIKLVSVKYDDFTLIDVLDE------TAHKKAIRSVAWRPHTS- 71 (330)
T ss_dssp EEEEEEECCSSCEEEEEEETT------EEEEEESSSCEEEEECSSSCCEEEEEECT------TCCCSCEEEEEECTTSS-
T ss_pred ccceeeccCCCceeeeccCCC------EEEEEcCCCEEEEEEecCCCeEEEEEEec------CCccCCEEEEEECCCCC-
Confidence 456678899999999998854 69999999999999998653 2233311 12567888888877655
Q ss_pred ccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCC---
Q 019405 118 ESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC--- 194 (341)
Q Consensus 118 ~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~--- 194 (341)
.|++++.|+.+++|++....... .....+..+. .|...|.+++|+|++++|++++.|++|++||++..
T Consensus 72 -------~las~s~D~~v~iw~~~~~~~~~-~~~~~~~~~~-~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~ 142 (330)
T 2hes_X 72 -------LLAAGSFDSTVSIWAKEESADRT-FEMDLLAIIE-GHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEE 142 (330)
T ss_dssp -------EEEEEETTSCEEEEEC--------CCCEEEEEEC-----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCC
T ss_pred -------EEEEEeCCCcEEEEEcccCcCcc-ccceeEEEEc-CCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCC
Confidence 89999999999999985322100 0111233332 46788999999999999999999999999999532
Q ss_pred -ceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCC-ceeEEEEecCCCeEEEEEcCC--C
Q 019405 195 -EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR-RPVMSFDFRETPIKAVAEEPD--S 270 (341)
Q Consensus 195 -~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~--~ 270 (341)
+.+..+..| ...|.+++| +|++.+|++++.|++|++||..... .++..+.+|...|.+++|+|+ +
T Consensus 143 ~~~~~~~~~h---------~~~v~~v~~--~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 211 (330)
T 2hes_X 143 YECISVLQEH---------SQDVKHVIW--HPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGV 211 (330)
T ss_dssp CEEEEEECCC---------SSCEEEEEE--CSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSS
T ss_pred eEEEEEeccC---------CCceEEEEE--CCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCe
Confidence 344455554 366999999 8899999999999999999988652 347788899999999999998 6
Q ss_pred ceEEEEeCCCCEEEEECCCC--------eEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCc
Q 019405 271 FNIYIGNGSGDLASVDIRTG--------KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ 334 (341)
Q Consensus 271 ~~l~~g~~dg~i~iwd~~~~--------~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 334 (341)
..|++|+.|+.|++||++.+ .+...+...|...|++++|++++ +|++++.||.|++||..+++
T Consensus 212 ~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~ 282 (330)
T 2hes_X 212 FRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGE 282 (330)
T ss_dssp CEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTE
T ss_pred eEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCc
Confidence 78999999999999998754 44555655338899999999765 89999999999999998763
No 39
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=3.5e-36 Score=260.95 Aligned_cols=272 Identities=15% Similarity=0.161 Sum_probs=218.1
Q ss_pred eeeeecCCCCeEEEEEecCccCccceee--eccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeec
Q 019405 16 RALTFDSLGLIKVIEARGEHGGVPKVVE--RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN 93 (341)
Q Consensus 16 ~~~~~~~~g~i~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 93 (341)
.+++.+-|+.|++|++.+. ++.. .+.+|...|++++|++++. +|++|+.||+|+|||+++++.+..+..
T Consensus 117 n~lAvgld~tV~lWd~~tg-----~~~~~~~~~~~~~~V~sv~fspdg~----~lasgs~Dg~v~iWd~~~~~~~~~~~~ 187 (420)
T 4gga_A 117 NVLAVALDNSVYLWSASSG-----DILQLLQMEQPGEYISSVAWIKEGN----YLAVGTSSAEVQLWDVQQQKRLRNMTS 187 (420)
T ss_dssp SEEEEEETTEEEEEETTTC-----CEEEEEECCSTTCCEEEEEECTTSS----EEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred CEEEEEeCCEEEEEECCCC-----CEEEEEEecCCCCcEEEEEECCCCC----EEEEEECCCeEEEEEcCCCcEEEEEeC
Confidence 3566667899999998875 3333 4556888899999988766 999999999999999999998888776
Q ss_pred cCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCC
Q 019405 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS 173 (341)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~ 173 (341)
| ...+.++.+. .. .+++++.|+.+.+|+..... ..+..+. .+...+..+.++|+
T Consensus 188 h--------~~~v~~~s~~--~~--------~l~sgs~d~~i~~~d~~~~~-------~~~~~~~-~h~~~~~~~~~~~~ 241 (420)
T 4gga_A 188 H--------SARVGSLSWN--SY--------ILSSGSRSGHIHHHDVRVAE-------HHVATLS-GHSQEVCGLRWAPD 241 (420)
T ss_dssp C--------SSCEEEEEEE--TT--------EEEEEETTSEEEEEETTSSS-------CEEEEEE-CCSSCEEEEEECTT
T ss_pred C--------CCceEEEeeC--CC--------EEEEEeCCCceeEeeecccc-------eeeEEec-ccccceeeeeecCC
Confidence 4 4566666542 22 89999999999999975432 2344444 46788999999999
Q ss_pred CCEEEEeeCCCeEEEEECCCCcee----eecCCCCCCccCccCCeeeeEEEEEecCC-CCEEEE--EeCCCeEEEEEcCC
Q 019405 174 EKFSLFGGKGVEVNVWDLDKCEKI----WTAKPPPKNSLGIFTPTWFTSAAFLSIDD-HRKFVA--GTNDHQVRLYDTSA 246 (341)
Q Consensus 174 ~~~l~~~~~d~~v~i~d~~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~--~~~d~~i~iwd~~~ 246 (341)
++++++++.|+.+++|+..+++.. ..... +...|.+++| .|. ..++++ |+.|++|++||+.+
T Consensus 242 g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~---------~~~~V~~~~~--~p~~~~~la~~~gs~D~~I~iwd~~t 310 (420)
T 4gga_A 242 GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ---------HQGAVKAVAW--CPWQSNVLATGGGTSDRHIRIWNVCS 310 (420)
T ss_dssp SSEEEEEETTSCEEEEESSCCSSCSCCSEEECC---------CSSCEEEEEE--CTTCTTEEEEEECTTTCEEEEEETTT
T ss_pred CCeeeeeeccccceEEeeccccccceeeeeecc---------cCCceeeeee--CCCcccEEEEEeecCCCEEEEEeCCc
Confidence 999999999999999999876532 22222 3466999999 554 455555 45799999999998
Q ss_pred CCceeEEEEecCCCeEEEEEcCCCceEEEEe--CCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCc
Q 019405 247 QRRPVMSFDFRETPIKAVAEEPDSFNIYIGN--GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSY 324 (341)
Q Consensus 247 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~--~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~ 324 (341)
++. +..+..| ..+.++.|+|++..+++++ .|+.|+|||+.+++++..+.+| .+.|++++|+|+|++|++++.|++
T Consensus 311 ~~~-~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH-~~~V~~l~~spdg~~l~S~s~D~t 387 (420)
T 4gga_A 311 GAC-LSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH-TSRVLSLTMSPDGATVASAAADET 387 (420)
T ss_dssp TEE-EEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC-SSCEEEEEECTTSSCEEEEETTTE
T ss_pred ccc-ceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCC-CCCEEEEEEcCCCCEEEEEecCCe
Confidence 764 6666644 5789999999998888765 7899999999999999999998 899999999999999999999999
Q ss_pred EEEEEcCCCcee
Q 019405 325 LRFWDIKTRQLL 336 (341)
Q Consensus 325 v~iwd~~~~~~~ 336 (341)
|+|||+....+.
T Consensus 388 vriWdv~~~~~~ 399 (420)
T 4gga_A 388 LRLWRCFELDPA 399 (420)
T ss_dssp EEEECCSCSSCC
T ss_pred EEEEECCCCCcc
Confidence 999999765543
No 40
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.9e-37 Score=264.39 Aligned_cols=281 Identities=13% Similarity=0.102 Sum_probs=229.3
Q ss_pred eeeeecCCCCeEEEEE----ecCcc-----CccceeeeccC------CCCCceeEEEeccCCCCCceEEEEccCCeEEEe
Q 019405 16 RALTFDSLGLIKVIEA----RGEHG-----GVPKVVERWGD------PHSSNCVLAASIDDSQNDPLLAVARKNGLTDIL 80 (341)
Q Consensus 16 ~~~~~~~~g~i~~~~~----~~~~~-----g~~~~~~~~~~------~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw 80 (341)
.+++++.||.+++|++ ..... ....+...+.. |...+.+++|++++. +|++++.||.|++|
T Consensus 60 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~----~l~~~~~dg~i~i~ 135 (425)
T 1r5m_A 60 ILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN----SIVTGVENGELRLW 135 (425)
T ss_dssp EEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS----EEEEEETTSCEEEE
T ss_pred EEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC----EEEEEeCCCeEEEE
Confidence 5788899999999999 54410 01111122222 577999999988665 89999999999999
Q ss_pred eCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeeccc---------------
Q 019405 81 NPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV--------------- 145 (341)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~--------------- 145 (341)
| .+++.+..+.. +...+.++.+.+... .+++++.++.+.+|++.....
T Consensus 136 ~-~~~~~~~~~~~--------~~~~v~~~~~~~~~~--------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 198 (425)
T 1r5m_A 136 N-KTGALLNVLNF--------HRAPIVSVKWNKDGT--------HIISMDVENVTILWNVISGTVMQHFELKETGGSSIN 198 (425)
T ss_dssp E-TTSCEEEEECC--------CCSCEEEEEECTTSS--------EEEEEETTCCEEEEETTTTEEEEEECCC--------
T ss_pred e-CCCCeeeeccC--------CCccEEEEEECCCCC--------EEEEEecCCeEEEEECCCCcEEEEeeccccCcccee
Confidence 9 56777666665 457788888877655 899999999999999754321
Q ss_pred ----------------------ccccCCceEEEEEeec----------CCceEEEEecCCCCEEEEeeCCCeEEEEECCC
Q 019405 146 ----------------------SAESSCSTVKSWNVCA----------SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDK 193 (341)
Q Consensus 146 ----------------------~~~~~~~~v~~~~~~~----------~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~ 193 (341)
..+..++.+++|+... ...|.+++|+|++++|++++.|+.|++||+++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 278 (425)
T 1r5m_A 199 AENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGN 278 (425)
T ss_dssp -------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSS
T ss_pred eccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence 1234567788887643 45789999999999999999999999999999
Q ss_pred CceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceE
Q 019405 194 CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNI 273 (341)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 273 (341)
++....+..+. ..+.+++| +|++ ++++++.|+.|++||+++++ .+..+..|...+.+++|+|++++|
T Consensus 279 ~~~~~~~~~~~---------~~i~~~~~--~~~~-~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l 345 (425)
T 1r5m_A 279 GNSQNCFYGHS---------QSIVSASW--VGDD-KVISCSMDGSVRLWSLKQNT-LLALSIVDGVPIFAGRISQDGQKY 345 (425)
T ss_dssp BSCSEEECCCS---------SCEEEEEE--ETTT-EEEEEETTSEEEEEETTTTE-EEEEEECTTCCEEEEEECTTSSEE
T ss_pred CccceEecCCC---------ccEEEEEE--CCCC-EEEEEeCCCcEEEEECCCCc-EeEecccCCccEEEEEEcCCCCEE
Confidence 88877776543 56999999 7788 99999999999999999866 488888899999999999999999
Q ss_pred EEEeCCCCEEEEECCCCe--------------------EEeEEeccccC--ceeEEEecCCCCEEEEEeCCCcEEEEEcC
Q 019405 274 YIGNGSGDLASVDIRTGK--------------------LLGCFIGKCSG--SIRSIARHPTLPIIASCGLDSYLRFWDIK 331 (341)
Q Consensus 274 ~~g~~dg~i~iwd~~~~~--------------------~~~~~~~~~~~--~i~~~~~~~~~~~l~s~~~dg~v~iwd~~ 331 (341)
++++.||.|++||+++++ ++..+..| .. .|++++|+|++++|++++.||.|++||++
T Consensus 346 ~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 346 AVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSS-QDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEEETTSCEEEEECHHHHC--------------CEECCEEEEECCT-TCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred EEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCc-ccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 999999999999999888 88889887 55 99999999999999999999999999986
No 41
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-37 Score=269.17 Aligned_cols=287 Identities=10% Similarity=0.112 Sum_probs=228.8
Q ss_pred cCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCC----CcchheeeccCC
Q 019405 21 DSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN----GDLRVAISNAGD 96 (341)
Q Consensus 21 ~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~----~~~~~~~~~~~~ 96 (341)
+.||.|++|++...... +....+ .|...+.+++|++++. +|++|+.||.|++|++.+ .+.+..+..
T Consensus 42 ~~d~~v~iw~~~~~~~~--~~~~~~-~~~~~v~~~~~s~~~~----~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~--- 111 (416)
T 2pm9_A 42 STDSSLELWSLLAADSE--KPIASL-QVDSKFNDLDWSHNNK----IIAGALDNGSLELYSTNEANNAINSMARFSN--- 111 (416)
T ss_dssp CCCCCCEEEESSSGGGC--SCSCCC-CCSSCEEEEEECSSSS----CEEEEESSSCEEEECCSSTTSCCCEEEECCC---
T ss_pred CCCCeEEEEEccCCCCC--cEEEEE-ecCCceEEEEECCCCC----eEEEEccCCeEEEeecccccccccchhhccC---
Confidence 78999999999876211 233334 5788999999987665 899999999999999987 234444443
Q ss_pred CCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEE-EEeecCCceEEEEecCC-C
Q 019405 97 SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKS-WNVCASGTIAFSKVDIS-E 174 (341)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~-~~~~~~~~i~~~~~~~~-~ 174 (341)
|...+.++.+.+.... .+++++.|+.+.+|++......... ...... ....+...|.+++|+|+ +
T Consensus 112 -----h~~~v~~~~~~~~~~~-------~l~s~~~dg~v~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~ 178 (416)
T 2pm9_A 112 -----HSSSVKTVKFNAKQDN-------VLASGGNNGEIFIWDMNKCTESPSN-YTPLTPGQSMSSVDEVISLAWNQSLA 178 (416)
T ss_dssp -----SSSCCCEEEECSSSTT-------BEEEECSSSCEEBCBTTTTSSCTTT-CCCBCCCCSCCSSCCCCEEEECSSCT
T ss_pred -----CccceEEEEEcCCCCC-------EEEEEcCCCeEEEEECCCCcccccc-ccccccccccCCCCCeeEEEeCCCCC
Confidence 5577888888765232 8999999999999998754310000 001110 01235678999999998 7
Q ss_pred CEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCC-CEEEEEeCCC---eEEEEEcCCCCce
Q 019405 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH-RKFVAGTNDH---QVRLYDTSAQRRP 250 (341)
Q Consensus 175 ~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~d~---~i~iwd~~~~~~~ 250 (341)
.++++++.|+.|++||+++++.+..+..+... ..|...+.+++| +|++ .++++++.|+ .|++||+++...+
T Consensus 179 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~---~~~~~~v~~~~~--~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~ 253 (416)
T 2pm9_A 179 HVFASAGSSNFASIWDLKAKKEVIHLSYTSPN---SGIKQQLSVVEW--HPKNSTRVATATGSDNDPSILIWDLRNANTP 253 (416)
T ss_dssp TEEEEESSSSCEEEEETTTTEEEEEECCCCCS---SCCCCCEEEEEE--CSSCTTEEEEEECCSSSCCCCEEETTSTTSC
T ss_pred cEEEEEcCCCCEEEEECCCCCcceEEeccccc---cccCCceEEEEE--CCCCCCEEEEEECCCCCceEEEEeCCCCCCC
Confidence 89999999999999999999888877765311 112366999999 7876 6899999998 9999999987556
Q ss_pred eEEEE-ecCCCeEEEEEcC-CCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCC-CEEEEEeCCCcEEE
Q 019405 251 VMSFD-FRETPIKAVAEEP-DSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL-PIIASCGLDSYLRF 327 (341)
Q Consensus 251 ~~~~~-~~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~dg~v~i 327 (341)
+..+. .|...|.+++|+| ++.+|++++.|+.|++||+++++++..+..| ...|++++|+|++ .+|++++.|+.|++
T Consensus 254 ~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~~l~s~~~d~~i~i 332 (416)
T 2pm9_A 254 LQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPAR-GNWCFKTKFAPEAPDLFACASFDNKIEV 332 (416)
T ss_dssp SBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECS-SSCCCCEEECTTCTTEEEECCSSSEEEE
T ss_pred cEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCC-CCceEEEEECCCCCCEEEEEecCCcEEE
Confidence 77787 8999999999999 8999999999999999999999999999998 8999999999999 79999999999999
Q ss_pred EEcCCCcee
Q 019405 328 WDIKTRQLL 336 (341)
Q Consensus 328 wd~~~~~~~ 336 (341)
||+.+++..
T Consensus 333 w~~~~~~~~ 341 (416)
T 2pm9_A 333 QTLQNLTNT 341 (416)
T ss_dssp EESCCCCCS
T ss_pred EEccCCCCC
Confidence 999887643
No 42
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.4e-36 Score=259.64 Aligned_cols=257 Identities=21% Similarity=0.188 Sum_probs=208.0
Q ss_pred CCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCC----------CCCCCceeeEeeeeccc
Q 019405 47 DPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGA----------QPEDDGIVGLHLFKRQR 116 (341)
Q Consensus 47 ~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~ 116 (341)
+|...|.+++|++++. +|++|+ +++++||++.+++.+..+..+..... ..+...+.++.+.+...
T Consensus 62 ~h~~~V~~v~fspdg~----~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~ 136 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGE----YLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK 136 (393)
T ss_dssp ECSSCCCEEEECTTSS----EEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSS
T ss_pred CCCCEEEEEEECCCCC----EEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCC
Confidence 5899999999998776 888876 78999999999988777655321100 01223466777766555
Q ss_pred cccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCce
Q 019405 117 EESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK 196 (341)
Q Consensus 117 ~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~ 196 (341)
.+++++.|+.+++|++.... .+..+. .|...|.+++|+|++++|++++.|++|++||+++++.
T Consensus 137 --------~l~s~~~d~~i~iwd~~~~~--------~~~~~~-~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~ 199 (393)
T 1erj_A 137 --------FLATGAEDRLIRIWDIENRK--------IVMILQ-GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC 199 (393)
T ss_dssp --------EEEEEETTSCEEEEETTTTE--------EEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred --------EEEEEcCCCeEEEEECCCCc--------EEEEEc-cCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCee
Confidence 89999999999999986432 344443 4678899999999999999999999999999999887
Q ss_pred eeecCCCCCCccCccCCeeeeEEEEEecC-CCCEEEEEeCCCeEEEEEcCCCCceeEEE-------EecCCCeEEEEEcC
Q 019405 197 IWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQVRLYDTSAQRRPVMSF-------DFRETPIKAVAEEP 268 (341)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-------~~~~~~v~~~~~~~ 268 (341)
...+... ..+.+++| +| ++.+|++++.|+.|++||+++++. +..+ .+|...|.+++|+|
T Consensus 200 ~~~~~~~----------~~v~~~~~--~~~~~~~l~~~s~d~~v~iwd~~~~~~-~~~~~~~~~~~~~h~~~v~~v~~~~ 266 (393)
T 1erj_A 200 SLTLSIE----------DGVTTVAV--SPGDGKYIAAGSLDRAVRVWDSETGFL-VERLDSENESGTGHKDSVYSVVFTR 266 (393)
T ss_dssp EEEEECS----------SCEEEEEE--CSTTCCEEEEEETTSCEEEEETTTCCE-EEEEC------CCCSSCEEEEEECT
T ss_pred EEEEEcC----------CCcEEEEE--ECCCCCEEEEEcCCCcEEEEECCCCcE-EEeecccccCCCCCCCCEEEEEECC
Confidence 7666532 44889999 66 889999999999999999998664 5444 46889999999999
Q ss_pred CCceEEEEeCCCCEEEEECCCC------------eEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCcee
Q 019405 269 DSFNIYIGNGSGDLASVDIRTG------------KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLL 336 (341)
Q Consensus 269 ~~~~l~~g~~dg~i~iwd~~~~------------~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 336 (341)
++++|++|+.|+.|++||+++. .+...+.+| ...|.+++|+|++.+|++++.|+.|++||+++++++
T Consensus 267 ~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~ 345 (393)
T 1erj_A 267 DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH-KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL 345 (393)
T ss_dssp TSSEEEEEETTSEEEEEEC---------------CEEEEEECC-SSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEE
T ss_pred CCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecc-cCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEE
Confidence 9999999999999999999753 345677787 889999999999999999999999999999999887
Q ss_pred eee
Q 019405 337 SAV 339 (341)
Q Consensus 337 ~~~ 339 (341)
..+
T Consensus 346 ~~l 348 (393)
T 1erj_A 346 LML 348 (393)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
No 43
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-35 Score=247.35 Aligned_cols=269 Identities=13% Similarity=0.112 Sum_probs=221.6
Q ss_pred ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCc---chhee
Q 019405 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD---LRVAI 91 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~ 91 (341)
-.+++++.||.|++|++... +....+..|...+.+++|++++. +|++++.||.|++|++.+.. ....+
T Consensus 30 ~~l~s~~~dg~v~vw~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~----~l~~~~~dg~i~~~~~~~~~~~~~~~~~ 100 (313)
T 3odt_A 30 SKVASVSRDGTVRLWSKDDQ-----WLGTVVYTGQGFLNSVCYDSEKE----LLLFGGKDTMINGVPLFATSGEDPLYTL 100 (313)
T ss_dssp TEEEEEETTSEEEEEEESSS-----EEEEEEEECSSCEEEEEEETTTT----EEEEEETTSCEEEEETTCCTTSCC-CEE
T ss_pred CEEEEEEcCCcEEEEECCCC-----EEEEEeecCCccEEEEEECCCCC----EEEEecCCCeEEEEEeeecCCCCcccch
Confidence 45889999999999999765 55666778899999999998766 89999999999999987643 33444
Q ss_pred eccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEec
Q 019405 92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD 171 (341)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~ 171 (341)
.. +...+.++.+ ... .+++++.||.+.+|+. ...+..+. .+...+.++.+.
T Consensus 101 ~~--------~~~~i~~~~~--~~~--------~l~~~~~d~~i~~~d~----------~~~~~~~~-~~~~~v~~~~~~ 151 (313)
T 3odt_A 101 IG--------HQGNVCSLSF--QDG--------VVISGSWDKTAKVWKE----------GSLVYNLQ-AHNASVWDAKVV 151 (313)
T ss_dssp CC--------CSSCEEEEEE--ETT--------EEEEEETTSEEEEEET----------TEEEEEEE-CCSSCEEEEEEE
T ss_pred hh--------cccCEEEEEe--cCC--------EEEEEeCCCCEEEEcC----------CcEEEecc-cCCCceeEEEEc
Confidence 33 5577888877 233 8999999999999981 11334444 367889999998
Q ss_pred C-CCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCce
Q 019405 172 I-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP 250 (341)
Q Consensus 172 ~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 250 (341)
| +++++++++.|+.|++||. .+....+... +...+.+++| +|++. +++++.|+.|++||+++++ +
T Consensus 152 ~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~--------~~~~i~~~~~--~~~~~-~~~~~~dg~i~i~d~~~~~-~ 217 (313)
T 3odt_A 152 SFSENKFLTASADKTIKLWQN--DKVIKTFSGI--------HNDVVRHLAV--VDDGH-FISCSNDGLIKLVDMHTGD-V 217 (313)
T ss_dssp ETTTTEEEEEETTSCEEEEET--TEEEEEECSS--------CSSCEEEEEE--EETTE-EEEEETTSEEEEEETTTCC-E
T ss_pred cCCCCEEEEEECCCCEEEEec--CceEEEEecc--------CcccEEEEEE--cCCCe-EEEccCCCeEEEEECCchh-h
Confidence 8 8999999999999999994 4444444442 2356999999 67776 8999999999999999876 4
Q ss_pred eEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEc
Q 019405 251 VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDI 330 (341)
Q Consensus 251 ~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~ 330 (341)
+..+..|..+|.+++|+|++ .|++++.||.|++||+++++++..+..| ...|.+++|+|+++ +++++.||.|++||+
T Consensus 218 ~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~ 294 (313)
T 3odt_A 218 LRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLP-AISIWSVDCMSNGD-IIVGSSDNLVRIFSQ 294 (313)
T ss_dssp EEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECS-SSCEEEEEECTTSC-EEEEETTSCEEEEES
T ss_pred hhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEecc-CceEEEEEEccCCC-EEEEeCCCcEEEEeC
Confidence 88899999999999999999 6889999999999999999999999988 88999999999998 667999999999999
Q ss_pred CCCceeee
Q 019405 331 KTRQLLSA 338 (341)
Q Consensus 331 ~~~~~~~~ 338 (341)
++++.+..
T Consensus 295 ~~~~~~~~ 302 (313)
T 3odt_A 295 EKSRWASE 302 (313)
T ss_dssp CGGGCCC-
T ss_pred CCCceeeh
Confidence 99876654
No 44
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.2e-35 Score=249.83 Aligned_cols=267 Identities=11% Similarity=0.085 Sum_probs=218.7
Q ss_pred eeeecCCCCeEEEEEecCccCccceeeecc--CCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcc--hheee
Q 019405 17 ALTFDSLGLIKVIEARGEHGGVPKVVERWG--DPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL--RVAIS 92 (341)
Q Consensus 17 ~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--~~~~~ 92 (341)
+++++ ||.+++|++...... .....+. .|...+.+++|++++. +|++++.||.|++||+.+++. ...+.
T Consensus 66 l~~~~-dg~i~iw~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~----~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 138 (337)
T 1gxr_A 66 VYTGG-KGCVKVWDISHPGNK--SPVSQLDCLNRDNYIRSCKLLPDGC----TLIVGGEASTLSIWDLAAPTPRIKAELT 138 (337)
T ss_dssp EEEEC-BSEEEEEETTSTTCC--SCSEEEECSCTTSBEEEEEECTTSS----EEEEEESSSEEEEEECCCC--EEEEEEE
T ss_pred EEEcC-CCeEEEEECCCCCce--eeeecccccCCCCcEEEEEEcCCCC----EEEEEcCCCcEEEEECCCCCcceeeecc
Confidence 44555 999999999875211 2222333 6888999999988665 899999999999999988763 33333
Q ss_pred ccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecC
Q 019405 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI 172 (341)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~ 172 (341)
. +...+.++.+.+... .+++++.+|.+.+|++.... .+..+. .+...+.+++|+|
T Consensus 139 ~--------~~~~i~~~~~~~~~~--------~l~~~~~dg~v~~~d~~~~~--------~~~~~~-~~~~~i~~~~~~~ 193 (337)
T 1gxr_A 139 S--------SAPACYALAISPDSK--------VCFSCCSDGNIAVWDLHNQT--------LVRQFQ-GHTDGASCIDISN 193 (337)
T ss_dssp C--------SSSCEEEEEECTTSS--------EEEEEETTSCEEEEETTTTE--------EEEEEC-CCSSCEEEEEECT
T ss_pred c--------CCCceEEEEECCCCC--------EEEEEeCCCcEEEEeCCCCc--------eeeeee-cccCceEEEEECC
Confidence 3 446678888776555 89999999999999986433 344444 3677899999999
Q ss_pred CCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeE
Q 019405 173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM 252 (341)
Q Consensus 173 ~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 252 (341)
+++++++++.|+.|++||+++++....+.. ...+.+++| +|++++|++++.|+.|++||+++.+ ..
T Consensus 194 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~----------~~~v~~~~~--s~~~~~l~~~~~~~~i~~~~~~~~~--~~ 259 (337)
T 1gxr_A 194 DGTKLWTGGLDNTVRSWDLREGRQLQQHDF----------TSQIFSLGY--CPTGEWLAVGMESSNVEVLHVNKPD--KY 259 (337)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEEC----------SSCEEEEEE--CTTSSEEEEEETTSCEEEEETTSSC--EE
T ss_pred CCCEEEEEecCCcEEEEECCCCceEeeecC----------CCceEEEEE--CCCCCEEEEEcCCCcEEEEECCCCC--eE
Confidence 999999999999999999999888776542 255899999 8999999999999999999999865 45
Q ss_pred EEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcC
Q 019405 253 SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331 (341)
Q Consensus 253 ~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~ 331 (341)
.+..|...|.+++|+|++++|++++.||.|++||+.+++.+.... | ...|.+++|+|++++|++++.||.|++||+.
T Consensus 260 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~-~-~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 260 QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-E-SSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-C-SSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEec-C-CCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 677899999999999999999999999999999999998885543 4 7899999999999999999999999999973
No 45
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=5.1e-36 Score=250.13 Aligned_cols=273 Identities=15% Similarity=0.162 Sum_probs=212.5
Q ss_pred eeeecCCCCeEEEEEecCccCccceee--eccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405 17 ALTFDSLGLIKVIEARGEHGGVPKVVE--RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (341)
Q Consensus 17 ~~~~~~~g~i~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 94 (341)
+++.+.|+.|++|++.+. +++. .+.+|...|.+++|++++. +|++|+.||+|+|||+++++.+..+..|
T Consensus 38 ~lAvg~D~tV~iWd~~tg-----~~~~~~~~~~~~~~V~~v~~~~~~~----~l~sgs~Dg~v~iw~~~~~~~~~~~~~h 108 (318)
T 4ggc_A 38 VLAVALDNSVYLWSASSG-----DILQLLQMEQPGEYISSVAWIKEGN----YLAVGTSSAEVQLWDVQQQKRLRNMTSH 108 (318)
T ss_dssp EEEEEETTEEEEEETTTC-----CEEEEEECCSTTCCEEEEEECTTSS----EEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred EEEEEeCCEEEEEECCCC-----CEEEEEEecCCCCeEEEEEECCCCC----EEEEEECCCcEEEeecCCceeEEEecCc
Confidence 566667899999998765 4443 4456888899999988776 8999999999999999999998888774
Q ss_pred CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC
Q 019405 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (341)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~ 174 (341)
...+.+... ... .+++++.++.+.+|+..... ..+.... .+...+..+.+++++
T Consensus 109 --------~~~~~~~~~--~~~--------~l~s~~~~~~~~~~~~~~~~-------~~~~~~~-~~~~~~~~~~~~~~~ 162 (318)
T 4ggc_A 109 --------SARVGSLSW--NSY--------ILSSGSRSGHIHHHDVRVAE-------HHVATLS-GHSQEVCGLRWAPDG 162 (318)
T ss_dssp --------SSCEEEEEE--ETT--------EEEEEETTSEEEEEETTSSS-------CEEEEEE-CCSSCEEEEEECTTS
T ss_pred --------cceEEEeec--CCC--------EEEEEecCCceEeeecCCCc-------eeEEEEc-CccCceEEEEEcCCC
Confidence 244443332 222 89999999999999865332 1333333 467789999999999
Q ss_pred CEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCC-EE--EEEeCCCeEEEEEcCCCCcee
Q 019405 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KF--VAGTNDHQVRLYDTSAQRRPV 251 (341)
Q Consensus 175 ~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l--~~~~~d~~i~iwd~~~~~~~~ 251 (341)
+++++++.|+.|++||+++++........ ...+...|.++.+ .+.+. .+ ++++.+++|++||.+....
T Consensus 163 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~~i~lwd~~~~~~-- 233 (318)
T 4ggc_A 163 RHLASGGNDNLVNVWPSAPGEGGWVPLQT-----FTQHQGAVKAVAW--CPWQSNVLATGGGTSDRHIRIWNVCSGAC-- 233 (318)
T ss_dssp SEEEEEETTSCEEEEESSCBTTBSCCSEE-----ECCCCSCEEEEEE--CTTSTTEEEEEECTTTCEEEEEETTTCCE--
T ss_pred CEEEEEecCcceeEEECCCCcccccceee-----ecccCCceEEEEe--cCCCCcEEEEEecCCCCEEEEEecccccc--
Confidence 99999999999999999886543221111 0112356888888 55544 33 3567889999999988653
Q ss_pred EEEEecCCCeEEEEEcCCCceEEEEe--CCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEE
Q 019405 252 MSFDFRETPIKAVAEEPDSFNIYIGN--GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWD 329 (341)
Q Consensus 252 ~~~~~~~~~v~~~~~~~~~~~l~~g~--~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd 329 (341)
.....+...+..+.|+|++..+++++ .|+.|++||+++++++.++.+| .+.|++++|+|++++|++++.||+|+|||
T Consensus 234 ~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH-~~~V~~l~~spdg~~l~S~s~D~~v~iWd 312 (318)
T 4ggc_A 234 LSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH-TSRVLSLTMSPDGATVASAAADETLRLWR 312 (318)
T ss_dssp EEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC-SSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred cccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCC-CCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence 33445777899999999998877654 7899999999999999999998 89999999999999999999999999999
Q ss_pred cCCCc
Q 019405 330 IKTRQ 334 (341)
Q Consensus 330 ~~~~~ 334 (341)
+.+..
T Consensus 313 ~~~~d 317 (318)
T 4ggc_A 313 CFELD 317 (318)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 97654
No 46
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-37 Score=273.55 Aligned_cols=287 Identities=10% Similarity=-0.020 Sum_probs=208.7
Q ss_pred eeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccC--CCCCceEEEEccCCeEEEeeCCCCcchhe--ee
Q 019405 17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDD--SQNDPLLAVARKNGLTDILNPLNGDLRVA--IS 92 (341)
Q Consensus 17 ~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~--~~~~~~l~~~~~dg~i~iw~~~~~~~~~~--~~ 92 (341)
+.+++.||.|++|++.... ........+..|...+..++|+++. .+++.+||+++.||+|+|||+.+++.... +.
T Consensus 176 laS~s~D~tI~iWd~~~~~-~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~ 254 (524)
T 2j04_B 176 FDKEKHSSCIQIFKMNTST-LHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKM 254 (524)
T ss_dssp ------CEEEEEEEEETTT-CCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEEC
T ss_pred hccCCCCceEEEEEccCCC-CCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccccee
Confidence 4567889999999987651 1111223455677889999999973 23466999999999999999987643210 00
Q ss_pred ccCC-CCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEE--E
Q 019405 93 NAGD-SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS--K 169 (341)
Q Consensus 93 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~--~ 169 (341)
...+ .....+...+.++.|.+ .. .|++|+.||++++|+++.... ....+. .|...|.++ .
T Consensus 255 ~~~p~~~l~~h~~~v~sv~~s~-~~--------~lasgs~DgtV~lWD~~~~~~-------~~~~~~-~H~~~V~sv~~~ 317 (524)
T 2j04_B 255 CEKPSLTLSLADSLITTFDFLS-PT--------TVVCGFKNGFVAEFDLTDPEV-------PSFYDQ-VHDSYILSVSTA 317 (524)
T ss_dssp CCSCSEEECCTTTCEEEEEESS-SS--------EEEEEETTSEEEEEETTBCSS-------CSEEEE-CSSSCEEEEEEE
T ss_pred ecCceEEEEcCCCCEEEEEecC-CC--------eEEEEeCCCEEEEEECCCCCC-------ceEEee-cccccEEEEEEE
Confidence 0000 01123567888888864 23 899999999999999864321 222333 467889999 5
Q ss_pred ecCCC-CEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCC
Q 019405 170 VDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR 248 (341)
Q Consensus 170 ~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 248 (341)
+++++ ++|++++.|++|++||+++++....+..+.. ...|.+++| +|++..+++++.|++|++||++++.
T Consensus 318 ~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~-------~~~v~~v~f--sp~~~~l~s~~~d~tv~lwd~~~~~ 388 (524)
T 2j04_B 318 YSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFR-------GSNLVPVVY--CPQIYSYIYSDGASSLRAVPSRAAF 388 (524)
T ss_dssp CCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECS-------CCSCCCEEE--ETTTTEEEEECSSSEEEEEETTCTT
T ss_pred cCCCCCeEEEEeccCCeEEEEECCCCCcccccccccc-------cCcccceEe--CCCcCeEEEeCCCCcEEEEECcccc
Confidence 78887 8999999999999999998776554443221 023788999 8899999999999999999999876
Q ss_pred ceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCC--------------------------------------
Q 019405 249 RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG-------------------------------------- 290 (341)
Q Consensus 249 ~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~-------------------------------------- 290 (341)
. +..+.+|...|++++|+|++++|++|+.|++|++||+..+
T Consensus 389 ~-~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~ 467 (524)
T 2j04_B 389 A-VHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVY 467 (524)
T ss_dssp C-CEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCC
T ss_pred c-ceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceec
Confidence 5 6778899999999999999999999999999999975321
Q ss_pred ------eEEeEEeccccCceeEEEecCCCC---EEEEEeCCCcEEEEEcCC
Q 019405 291 ------KLLGCFIGKCSGSIRSIARHPTLP---IIASCGLDSYLRFWDIKT 332 (341)
Q Consensus 291 ------~~~~~~~~~~~~~i~~~~~~~~~~---~l~s~~~dg~v~iwd~~~ 332 (341)
.++..+.+| ...|++++|+|+++ .+++|+.||.|+||++.-
T Consensus 468 ~~~~~g~~~~~l~gh-~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 468 PLTVNDVSKAKIDAH-GINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp C-------------C-CCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred ccccCCcceeeecCC-CceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 112233445 78999999999965 999999999999999873
No 47
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.9e-37 Score=267.71 Aligned_cols=280 Identities=12% Similarity=0.088 Sum_probs=219.8
Q ss_pred eeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccC
Q 019405 16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAG 95 (341)
Q Consensus 16 ~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 95 (341)
.+++++.||.+++|++... +....+..+ ..+...++++++. +|++|+.||.|++||+.+++....+..
T Consensus 70 ~l~~~~~d~~v~i~d~~~~-----~~~~~~~~~-~~~~~~~~~~~~~----~l~~~~~dg~i~iwd~~~~~~~~~~~~-- 137 (420)
T 3vl1_A 70 HLYKARLDGHDFLFNTIIR-----DGSKMLKRA-DYTAVDTAKLQMR----RFILGTTEGDIKVLDSNFNLQREIDQA-- 137 (420)
T ss_dssp TEEEEEETTEEEEEECCSE-----ETTTTSCSC-CEEEEEEECSSSC----EEEEEETTSCEEEECTTSCEEEEETTS--
T ss_pred eEEEEEcCCcEEEEEeccc-----ceeeEEecC-CceEEEEEecCCC----EEEEEECCCCEEEEeCCCcceeeeccc--
Confidence 4788899999999998775 222233333 3333445555544 899999999999999998877665544
Q ss_pred CCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCC
Q 019405 96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK 175 (341)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~ 175 (341)
|...+.++.+.+... .+++++.|+.+++|++.... .+..+. .|...|.+++|+|+++
T Consensus 138 ------h~~~v~~~~~~~~~~--------~l~s~s~d~~i~iwd~~~~~--------~~~~~~-~h~~~v~~~~~~~~~~ 194 (420)
T 3vl1_A 138 ------HVSEITKLKFFPSGE--------ALISSSQDMQLKIWSVKDGS--------NPRTLI-GHRATVTDIAIIDRGR 194 (420)
T ss_dssp ------SSSCEEEEEECTTSS--------EEEEEETTSEEEEEETTTCC--------CCEEEE-CCSSCEEEEEEETTTT
T ss_pred ------ccCccEEEEECCCCC--------EEEEEeCCCeEEEEeCCCCc--------CceEEc-CCCCcEEEEEEcCCCC
Confidence 557899998877655 89999999999999986443 344444 4678999999999999
Q ss_pred EEEEeeCCCeEEEEECCCCceeeecCCCCCCcc---------------CccCCeeeeEEEEEecCCCCEEEEEeCCCeEE
Q 019405 176 FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSL---------------GIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVR 240 (341)
Q Consensus 176 ~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~---------------~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~ 240 (341)
+|++++.|+.|++||+++++.+..+..+..... ...+...+.+++| +|++++|++++.||.|+
T Consensus 195 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~~~~~dg~i~ 272 (420)
T 3vl1_A 195 NVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEF--GTYGKYVIAGHVSGVIT 272 (420)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCS--SCTTEEEEEEETTSCEE
T ss_pred EEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEE--cCCCCEEEEEcCCCeEE
Confidence 999999999999999999998888765432110 0011234555666 78999999999999999
Q ss_pred EEEcCCCCceeEEEEecCCCeEEEEEcCCCc-eEEEEeCCCCEEEEECCCCe-EEeEEeccccCceeEEEecCCCCEEEE
Q 019405 241 LYDTSAQRRPVMSFDFRETPIKAVAEEPDSF-NIYIGNGSGDLASVDIRTGK-LLGCFIGKCSGSIRSIARHPTLPIIAS 318 (341)
Q Consensus 241 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~g~~dg~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~s 318 (341)
+||+++++........|...|.+++|+|++. +|++|+.||.|++||+++++ ++..+..|+...|.++.+ +++++|++
T Consensus 273 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s 351 (420)
T 3vl1_A 273 VHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVS 351 (420)
T ss_dssp EEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEE
T ss_pred EEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEE
Confidence 9999987753333345788999999999998 99999999999999999875 477788766888988865 57889999
Q ss_pred EeCCCcEEEEEcCCC
Q 019405 319 CGLDSYLRFWDIKTR 333 (341)
Q Consensus 319 ~~~dg~v~iwd~~~~ 333 (341)
++.|+.|++||+...
T Consensus 352 ~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 352 SGFDTSIKLDIISDP 366 (420)
T ss_dssp ETTTEEEEEEEECCT
T ss_pred ecCCccEEEEeccCC
Confidence 999999999998863
No 48
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=5.1e-37 Score=267.38 Aligned_cols=281 Identities=13% Similarity=0.083 Sum_probs=207.6
Q ss_pred eeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccC
Q 019405 16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAG 95 (341)
Q Consensus 16 ~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 95 (341)
.+++|+.||.|++|++.... . .....+.+|...|.+++|++.. +.+|++|+.||+|+|||++++.. ..+..+.
T Consensus 134 ~lasGs~dg~i~lWd~~~~~-~--~~~~~~~gH~~~V~~l~f~p~~---~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~ 206 (435)
T 4e54_B 134 TVAVGSKGGDIMLWNFGIKD-K--PTFIKGIGAGGSITGLKFNPLN---TNQFYASSMEGTTRLQDFKGNIL-RVFASSD 206 (435)
T ss_dssp CEEEEETTSCEEEECSSCCS-C--CEEECCCSSSCCCCEEEECSSC---TTEEEEECSSSCEEEEETTSCEE-EEEECCS
T ss_pred EEEEEeCCCEEEEEECCCCC-c--eeEEEccCCCCCEEEEEEeCCC---CCEEEEEeCCCEEEEeeccCCce-eEEeccC
Confidence 47789999999999987651 1 2344667899999999998632 23899999999999999976543 3333211
Q ss_pred CCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCC
Q 019405 96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK 175 (341)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~ 175 (341)
.....+.++.+.+... .+++++.||.+.+|+++... +..+. .|...|.+++|+|++.
T Consensus 207 -----~~~~~~~~~~~~~~~~--------~l~~g~~dg~i~~wd~~~~~---------~~~~~-~h~~~v~~v~~~p~~~ 263 (435)
T 4e54_B 207 -----TINIWFCSLDVSASSR--------MVVTGDNVGNVILLNMDGKE---------LWNLR-MHKKKVTHVALNPCCD 263 (435)
T ss_dssp -----SCSCCCCCEEEETTTT--------EEEEECSSSBEEEEESSSCB---------CCCSB-CCSSCEEEEEECTTCS
T ss_pred -----CCCccEEEEEECCCCC--------EEEEEeCCCcEeeeccCcce---------eEEEe-cccceEEeeeecCCCc
Confidence 1223455666655544 89999999999999985322 22222 3567899999999875
Q ss_pred -EEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEE
Q 019405 176 -FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF 254 (341)
Q Consensus 176 -~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 254 (341)
++++++.|+.|++||+++.+....+... ..|...|.+++| +|++.+|++++.|+.|++||+.++.. ...+
T Consensus 264 ~~~~s~s~d~~v~iwd~~~~~~~~~~~~~------~~h~~~v~~~~~--spdg~~l~s~~~D~~i~iwd~~~~~~-~~~~ 334 (435)
T 4e54_B 264 WFLATASVDQTVKIWDLRQVRGKASFLYS------LPHRHPVNAACF--SPDGARLLTTDQKSEIRVYSASQWDC-PLGL 334 (435)
T ss_dssp SEEEEEETTSBCCEEETTTCCSSSCCSBC------CBCSSCEEECCB--CTTSSEEEEEESSSCEEEEESSSSSS-EEEE
T ss_pred eEEEEecCcceeeEEecccccccceEEEe------eeccccccceeE--CCCCCeeEEEcCCCEEEEEECCCCcc-ceEE
Confidence 7889999999999999876654333221 124577999999 89999999999999999999998765 4455
Q ss_pred EecCC------CeEEEEEcCCCceEEEEeC------------CCCEEEEECCCCeEEeEEeccccCceeEE-EecCCCCE
Q 019405 255 DFRET------PIKAVAEEPDSFNIYIGNG------------SGDLASVDIRTGKLLGCFIGKCSGSIRSI-ARHPTLPI 315 (341)
Q Consensus 255 ~~~~~------~v~~~~~~~~~~~l~~g~~------------dg~i~iwd~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~ 315 (341)
..|.. .+....|+|++..+++++. ++.|++||..+++.+..+..+|...|.++ +|+|+|.+
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~ 414 (435)
T 4e54_B 335 IPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDT 414 (435)
T ss_dssp CCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSC
T ss_pred ecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCE
Confidence 44432 2334567777777766642 35799999999999988876558889987 69999999
Q ss_pred EEEEeCCCcEEEEEcCCCcee
Q 019405 316 IASCGLDSYLRFWDIKTRQLL 336 (341)
Q Consensus 316 l~s~~~dg~v~iwd~~~~~~~ 336 (341)
|++|+ |+.|+|||+++++..
T Consensus 415 lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 415 LASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp EEEEC-SSEEEECCCC-----
T ss_pred EEEEc-CCcEEEEECCcCeee
Confidence 99876 789999999998764
No 49
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.3e-36 Score=257.87 Aligned_cols=278 Identities=13% Similarity=0.099 Sum_probs=215.7
Q ss_pred eeeecC---CCCeEEEEEecCccCccceeee-ccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCc-chhee
Q 019405 17 ALTFDS---LGLIKVIEARGEHGGVPKVVER-WGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD-LRVAI 91 (341)
Q Consensus 17 ~~~~~~---~g~i~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~ 91 (341)
+++++. ||.+++|++... +.... ..+|...+.+++|+++. +++++|++|+.||.|++||+.+++ .+..+
T Consensus 34 ~~~~s~~~~d~~v~iw~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 107 (357)
T 3i2n_A 34 VTMGNFARGTGVIQLYEIQHG-----DLKLLREIEKAKPIKCGTFGATS-LQQRYLATGDFGGNLHIWNLEAPEMPVYSV 107 (357)
T ss_dssp EEEEC--CCCEEEEEEEECSS-----SEEEEEEEEESSCEEEEECTTCC-TTTCCEEEEETTSCEEEECTTSCSSCSEEE
T ss_pred EEecCccCCCcEEEEEeCCCC-----cccceeeecccCcEEEEEEcCCC-CCCceEEEecCCCeEEEEeCCCCCccEEEE
Confidence 345554 899999999875 22212 22688999999998873 124589999999999999999887 66666
Q ss_pred eccCCCCCCCCCCceeeEeeee-----ccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeec---CC
Q 019405 92 SNAGDSGAQPEDDGIVGLHLFK-----RQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA---SG 163 (341)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~---~~ 163 (341)
.. +...+.++.+.+ ++. ..+++++.||.+.+|++..... .+..+.... ..
T Consensus 108 ~~--------~~~~v~~~~~~~~~~~s~~~-------~~l~~~~~d~~i~vwd~~~~~~-------~~~~~~~~~~~~~~ 165 (357)
T 3i2n_A 108 KG--------HKEIINAIDGIGGLGIGEGA-------PEIVTGSRDGTVKVWDPRQKDD-------PVANMEPVQGENKR 165 (357)
T ss_dssp CC--------CSSCEEEEEEESGGGCC-CC-------CEEEEEETTSCEEEECTTSCSS-------CSEEECCCTTSCCC
T ss_pred Ee--------cccceEEEeeccccccCCCc-------cEEEEEeCCCeEEEEeCCCCCC-------cceeccccCCCCCC
Confidence 65 457788886643 222 2899999999999999864331 334443322 23
Q ss_pred ceEEEE----ecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecC---CCCEEEEEeCC
Q 019405 164 TIAFSK----VDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID---DHRKFVAGTND 236 (341)
Q Consensus 164 ~i~~~~----~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~l~~~~~d 236 (341)
.+.+++ |+|+++++++++.|+.|++||+++++...... +...|.+++| +| ++.+|++++.|
T Consensus 166 ~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~----------~~~~v~~~~~--~~~~~~~~~l~~~~~d 233 (357)
T 3i2n_A 166 DCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETN----------IKNGVCSLEF--DRKDISMNKLVATSLE 233 (357)
T ss_dssp CEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEE----------CSSCEEEEEE--SCSSSSCCEEEEEEST
T ss_pred ceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecC----------CCCceEEEEc--CCCCCCCCEEEEECCC
Confidence 788887 78899999999999999999999887754422 2356999999 78 89999999999
Q ss_pred CeEEEEEcCCCCceeEE-----EEecCCCeEEEEEcCCCc-eEEEEeCCCCEEEEECCCC-------------------e
Q 019405 237 HQVRLYDTSAQRRPVMS-----FDFRETPIKAVAEEPDSF-NIYIGNGSGDLASVDIRTG-------------------K 291 (341)
Q Consensus 237 ~~i~iwd~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~-~l~~g~~dg~i~iwd~~~~-------------------~ 291 (341)
+.|++||+++.+. +.. +..|...|++++|+|+++ +|++++.||.|++||++++ +
T Consensus 234 g~i~i~d~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~ 312 (357)
T 3i2n_A 234 GKFHVFDMRTQHP-TKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVS 312 (357)
T ss_dssp TEEEEEEEEEEET-TTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEE
T ss_pred CeEEEEeCcCCCc-ccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccc
Confidence 9999999987543 333 348999999999999998 8999999999999999753 4
Q ss_pred EEeEEeccccCceeEEEecCCCCEEE-EEeCCCcEEEEEcCCCcee
Q 019405 292 LLGCFIGKCSGSIRSIARHPTLPIIA-SCGLDSYLRFWDIKTRQLL 336 (341)
Q Consensus 292 ~~~~~~~~~~~~i~~~~~~~~~~~l~-s~~~dg~v~iwd~~~~~~~ 336 (341)
++..+.+| ...|++++|+|++++|+ +++.|+.|++||+.+.+.+
T Consensus 313 ~~~~~~~~-~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~i 357 (357)
T 3i2n_A 313 LLQNVTLS-TQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNKI 357 (357)
T ss_dssp EEEEEECC-SSCEEEEEECSSSTTEEEEEETTSEEEEEEECC----
T ss_pred eeeccccC-CCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcccC
Confidence 67778887 89999999999999988 8999999999999987653
No 50
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=9.3e-36 Score=251.37 Aligned_cols=257 Identities=13% Similarity=0.165 Sum_probs=200.2
Q ss_pred eeeeccCCCCCceeEEEeccC--CCCCceEEEEccCCeEEEeeCCCCcc-------hheeeccCCCCCCCCCCceeeEee
Q 019405 41 VVERWGDPHSSNCVLAASIDD--SQNDPLLAVARKNGLTDILNPLNGDL-------RVAISNAGDSGAQPEDDGIVGLHL 111 (341)
Q Consensus 41 ~~~~~~~~~~~~~~~~~s~~~--~~~~~~l~~~~~dg~i~iw~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 111 (341)
....+.+|...|++++|.+.. .+++++|++|+.|++|+|||+.+.+. ...+. .|...+.++.+
T Consensus 13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~--------~h~~~V~~~~~ 84 (343)
T 2xzm_R 13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALT--------GHNHFVSDLAL 84 (343)
T ss_dssp EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEEC--------CCSSCEEEEEE
T ss_pred eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhc--------cCCCceEEEEE
Confidence 445688899999999984432 23667999999999999999975432 22333 35678888888
Q ss_pred eeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEEC
Q 019405 112 FKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDL 191 (341)
Q Consensus 112 ~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~ 191 (341)
.+... .+++++.|+.+++|++.... .+..+. .|...|.+++|+|++++|++++.|+.|++||+
T Consensus 85 ~~~~~--------~l~s~s~D~~v~lwd~~~~~--------~~~~~~-~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~ 147 (343)
T 2xzm_R 85 SQENC--------FAISSSWDKTLRLWDLRTGT--------TYKRFV-GHQSEVYSVAFSPDNRQILSAGAEREIKLWNI 147 (343)
T ss_dssp CSSTT--------EEEEEETTSEEEEEETTSSC--------EEEEEE-CCCSCEEEEEECSSTTEEEEEETTSCEEEEES
T ss_pred CCCCC--------EEEEEcCCCcEEEEECCCCc--------EEEEEc-CCCCcEEEEEECCCCCEEEEEcCCCEEEEEec
Confidence 76555 89999999999999986433 444444 46789999999999999999999999999999
Q ss_pred CCCceeeecCCCCCCccCccCCeeeeEEEEEecCCC----------CEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCe
Q 019405 192 DKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH----------RKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPI 261 (341)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v 261 (341)
.... ....... ..|..+|.+++| +|++ .+|++++.|+.|++||... .....+..|...|
T Consensus 148 ~~~~-~~~~~~~------~~~~~~v~~~~~--~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~h~~~v 216 (343)
T 2xzm_R 148 LGEC-KFSSAEK------ENHSDWVSCVRY--SPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF--QIRYTFKAHESNV 216 (343)
T ss_dssp SSCE-EEECCTT------TSCSSCEEEEEE--CCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT--EEEEEEECCSSCE
T ss_pred cCCc-eeeeecc------cCCCceeeeeee--ccccccccccCCCCCEEEEEcCCCEEEEEcCCC--ceeEEEcCccccc
Confidence 7433 2222211 114467999999 6665 7899999999999999543 3477888999999
Q ss_pred EEEEEcCCCceEEEEeCCCCEEEEECCC-CeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCcee
Q 019405 262 KAVAEEPDSFNIYIGNGSGDLASVDIRT-GKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLL 336 (341)
Q Consensus 262 ~~~~~~~~~~~l~~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 336 (341)
.+++|+|++++|++|+.|+.|++||+.+ ......+. + ...|.+++|+|++++++++ .|+.|++||+.+++..
T Consensus 217 ~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~-~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~ 289 (343)
T 2xzm_R 217 NHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD-A-GSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKA 289 (343)
T ss_dssp EEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE-C-SSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSC
T ss_pred eEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec-C-CCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCC
Confidence 9999999999999999999999999954 34444443 3 4679999999999887654 6888999999887654
No 51
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=8.3e-36 Score=261.99 Aligned_cols=281 Identities=9% Similarity=0.108 Sum_probs=231.1
Q ss_pred CceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeec
Q 019405 14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN 93 (341)
Q Consensus 14 ~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 93 (341)
+-.+++++.||.|++|++.+. +.+..+.+|...+.+++|+++. +|++|+.||+|++||+++++.+..+..
T Consensus 132 ~~~l~sgs~dg~i~vwd~~~~-----~~~~~~~~h~~~V~~l~~~~~~-----~l~s~s~dg~i~vwd~~~~~~~~~~~~ 201 (464)
T 3v7d_B 132 DNYVITGADDKMIRVYDSINK-----KFLLQLSGHDGGVWALKYAHGG-----ILVSGSTDRTVRVWDIKKGCCTHVFEG 201 (464)
T ss_dssp TTEEEEEETTSCEEEEETTTT-----EEEEEECCCSSCEEEEEECSTT-----EEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred CCEEEEEcCCCcEEEEECCCC-----cEEEEEeCCCcCEEEEEEcCCC-----EEEEEeCCCCEEEEECCCCcEEEEECC
Confidence 346889999999999998876 6777888999999999997654 599999999999999999988877765
Q ss_pred cCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeeccccccc--------------CCc-eEEEEE
Q 019405 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAES--------------SCS-TVKSWN 158 (341)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~--------------~~~-~v~~~~ 158 (341)
+...+.++.+.+.... ..+++++.||.+.+|++......... ... .+...
T Consensus 202 --------h~~~v~~l~~~~~~~~------~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 266 (464)
T 3v7d_B 202 --------HNSTVRCLDIVEYKNI------KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL- 266 (464)
T ss_dssp --------CSSCEEEEEEEESSSC------EEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEE-
T ss_pred --------CCCccEEEEEecCCCC------CEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEc-
Confidence 4578888888753221 18999999999999998765422100 000 12222
Q ss_pred eecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCe
Q 019405 159 VCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ 238 (341)
Q Consensus 159 ~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~ 238 (341)
..+...+.++ +++++++++++.|+.|++||+++++.+..+..+. ..|.+++| +|+++++++++.|+.
T Consensus 267 ~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~---------~~v~~~~~--~~~~~~l~sg~~dg~ 333 (464)
T 3v7d_B 267 RGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT---------DRIYSTIY--DHERKRCISASMDTT 333 (464)
T ss_dssp CCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCS---------SCEEEEEE--ETTTTEEEEEETTSC
T ss_pred cCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC---------CCEEEEEE--cCCCCEEEEEeCCCc
Confidence 2344556665 5778999999999999999999999988887654 56999999 889999999999999
Q ss_pred EEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEE
Q 019405 239 VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIAS 318 (341)
Q Consensus 239 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 318 (341)
|++||+++++ ++..+.+|...|.+++|+ +.+|++++.||.|++||+.+++....+. +...+..++|+|++++|++
T Consensus 334 i~vwd~~~~~-~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~ 408 (464)
T 3v7d_B 334 IRIWDLENGE-LMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH--HTNLSAITTFYVSDNILVS 408 (464)
T ss_dssp EEEEETTTTE-EEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE--CTTCCCEEEEEECSSEEEE
T ss_pred EEEEECCCCc-EEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec--CCCCccEEEEEeCCCEEEE
Confidence 9999999876 488899999999999997 4699999999999999999988766654 3678888999999999999
Q ss_pred EeCCCcEEEEEcCCCceeee
Q 019405 319 CGLDSYLRFWDIKTRQLLSA 338 (341)
Q Consensus 319 ~~~dg~v~iwd~~~~~~~~~ 338 (341)
++ ||.|++||+++++++.+
T Consensus 409 ~~-dg~i~iwd~~~g~~~~~ 427 (464)
T 3v7d_B 409 GS-ENQFNIYNLRSGKLVHA 427 (464)
T ss_dssp EE-TTEEEEEETTTCCEEES
T ss_pred ec-CCeEEEEECCCCcEEeh
Confidence 98 89999999999999876
No 52
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=9.4e-36 Score=251.29 Aligned_cols=272 Identities=11% Similarity=0.071 Sum_probs=213.6
Q ss_pred eccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCc----chheeeccCCCCCCCCCCceeeEeeeec--ccc
Q 019405 44 RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD----LRVAISNAGDSGAQPEDDGIVGLHLFKR--QRE 117 (341)
Q Consensus 44 ~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 117 (341)
.+.+|...|.+++|++++. +|++|+.||.|+|||+.++. ....+.. +...+.++.+.+. ..
T Consensus 6 ~~~gH~~~v~~~~~~~~~~----~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~d~~- 72 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGR----HVATCSSDQHIKVFKLDKDTSNWELSDSWRA--------HDSSIVAIDWASPEYGR- 72 (351)
T ss_dssp EECCCSSCEEEEEECSSSS----EEEEEETTSEEEEEEECSSSCCEEEEEEEEC--------CSSCEEEEEECCGGGCS-
T ss_pred cCcccccceeEEEEcCCCC----EEEEeeCCCeEEEEECCCCCCcceecceecc--------CCCcEEEEEEcCCCCCC-
Confidence 4678999999999988666 89999999999999998764 3333333 5578999998775 33
Q ss_pred ccccccceeEEEcccceeEEEEeeeccccccc-CCceEEEEEeecCCceEEEEecCC--CCEEEEeeCCCeEEEEECCCC
Q 019405 118 ESSSRSRTLLTCTTKGKASMRSIEVTKVSAES-SCSTVKSWNVCASGTIAFSKVDIS--EKFSLFGGKGVEVNVWDLDKC 194 (341)
Q Consensus 118 ~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~-~~~~v~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~v~i~d~~~~ 194 (341)
.+++++.||.+++|++......... ....+..+. .+...|.+++|+|+ ++++++++.|+.|++||++++
T Consensus 73 -------~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~ 144 (351)
T 3f3f_A 73 -------IIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLN-DSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEP 144 (351)
T ss_dssp -------EEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEEC-CCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSST
T ss_pred -------EEEEEcCCCeEEEEecCCCcccccccCcceeeeec-ccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCCh
Confidence 8999999999999999754321110 112334443 46788999999999 999999999999999999887
Q ss_pred ceeeecCCCC----CCccCccCCeeeeEEEEEecCC---CCEEEEEeCCCeEEEEEcCCCCc-eeEEEEecCCCeEEEEE
Q 019405 195 EKIWTAKPPP----KNSLGIFTPTWFTSAAFLSIDD---HRKFVAGTNDHQVRLYDTSAQRR-PVMSFDFRETPIKAVAE 266 (341)
Q Consensus 195 ~~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~ 266 (341)
+.+..+.... .......+...+.+++| +|+ +.++++++.++.+.+|+...++. .+..+..|...|++++|
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~ 222 (351)
T 3f3f_A 145 SDLRSWTLTSEMKVLSIPPANHLQSDFCLSW--CPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISW 222 (351)
T ss_dssp TCTTCCEEEEEEESCSCCCSSCSCCCEEEEE--CCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEE
T ss_pred HHhccccccccccccccccCCcccceeEEEe--ccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEE
Confidence 6544332100 00011124467999999 665 88999999999998888776542 35666779999999999
Q ss_pred cCCC----ceEEEEeCCCCEEEEECCCC----------------------------------------------eEEeEE
Q 019405 267 EPDS----FNIYIGNGSGDLASVDIRTG----------------------------------------------KLLGCF 296 (341)
Q Consensus 267 ~~~~----~~l~~g~~dg~i~iwd~~~~----------------------------------------------~~~~~~ 296 (341)
+|++ .+|++|+.||.|++||++++ +++..+
T Consensus 223 ~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (351)
T 3f3f_A 223 APSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEH 302 (351)
T ss_dssp CCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEE
T ss_pred CCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEE
Confidence 9998 89999999999999999864 667778
Q ss_pred eccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 297 IGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 297 ~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
.+| ...|++++|+|++++|++++.||.|++||+.+++.+..+
T Consensus 303 ~~h-~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 303 DDH-NGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp CTT-SSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred ecc-cccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 887 899999999999999999999999999999998766554
No 53
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=8.4e-37 Score=254.73 Aligned_cols=250 Identities=10% Similarity=0.077 Sum_probs=194.4
Q ss_pred eccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCc--chheeeccCCCCCCCCCCceeeEeeeecc-ccccc
Q 019405 44 RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD--LRVAISNAGDSGAQPEDDGIVGLHLFKRQ-REESS 120 (341)
Q Consensus 44 ~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 120 (341)
.+.+|...|.+++|++++. +|++|+.|++|+|||+.+++ .+..+.. |.+.+.++.|.++. ..
T Consensus 8 ~~~~H~~~V~~v~~s~~g~----~lasgs~D~~v~lwd~~~~~~~~~~~l~g--------H~~~V~~v~~~~~~~~~--- 72 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGT----RLATCSSDRSVKIFDVRNGGQILIADLRG--------HEGPVWQVAWAHPMYGN--- 72 (316)
T ss_dssp ------CCEEEEEECGGGC----EEEEEETTTEEEEEEEETTEEEEEEEEEC--------CSSCEEEEEECCGGGSS---
T ss_pred ecccccCeEEEeeEcCCCC----EEEEEeCCCeEEEEEecCCCcEEEEEEcC--------CCccEEEEEeCCCCCCC---
Confidence 3567999999999998776 89999999999999998764 3445554 55789888886542 22
Q ss_pred cccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCC--CCEEEEeeCCCeEEEEECCCCcee-
Q 019405 121 SRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS--EKFSLFGGKGVEVNVWDLDKCEKI- 197 (341)
Q Consensus 121 ~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~v~i~d~~~~~~~- 197 (341)
.|++++.|+++++|++..... ..+..+. .|...|.+++|+|+ +.+|++++.|+.|++||++++...
T Consensus 73 ----~l~s~s~D~~v~iWd~~~~~~------~~~~~~~-~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~ 141 (316)
T 3bg1_A 73 ----ILASCSYDRKVIIWREENGTW------EKSHEHA-GHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWE 141 (316)
T ss_dssp ----CEEEEETTSCEEEECCSSSCC------CEEEEEC-CCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEE
T ss_pred ----EEEEEECCCEEEEEECCCCcc------eEEEEcc-CCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcc
Confidence 899999999999999864320 1223332 36778999999997 789999999999999999875322
Q ss_pred --eecCCCCCCccCccCCeeeeEEEEEecCC-----------------CCEEEEEeCCCeEEEEEcCCCC--ceeEEEEe
Q 019405 198 --WTAKPPPKNSLGIFTPTWFTSAAFLSIDD-----------------HRKFVAGTNDHQVRLYDTSAQR--RPVMSFDF 256 (341)
Q Consensus 198 --~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----------------~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~ 256 (341)
..+.. |...+.+++| +|+ +.+|++++.|++|++||++... .++..+.+
T Consensus 142 ~~~~~~~---------h~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~ 210 (316)
T 3bg1_A 142 VKKINNA---------HTIGCNAVSW--APAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEA 210 (316)
T ss_dssp ECCBTTS---------SSSCBCCCEE--CCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBC
T ss_pred eeeeecc---------ccCCcceEEE--ccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeeccc
Confidence 22222 3356888999 555 4689999999999999997542 24667788
Q ss_pred cCCCeEEEEEcCCC----ceEEEEeCCCCEEEEECCCC---e-EEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEE
Q 019405 257 RETPIKAVAEEPDS----FNIYIGNGSGDLASVDIRTG---K-LLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFW 328 (341)
Q Consensus 257 ~~~~v~~~~~~~~~----~~l~~g~~dg~i~iwd~~~~---~-~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iw 328 (341)
|...|.+++|+|++ .+|++++.|+.|++||+++. + ....+..| ...|++++|+|++++|++++.|+.|++|
T Consensus 211 h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~-~~~v~~v~~sp~g~~las~~~D~~v~lw 289 (316)
T 3bg1_A 211 HSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKF-NDVVWHVSWSITANILAVSGGDNKVTLW 289 (316)
T ss_dssp CSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEEC-SSCEEEEEECTTTCCEEEEESSSCEEEE
T ss_pred CCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcC-CCcEEEEEEcCCCCEEEEEcCCCeEEEE
Confidence 99999999999986 78999999999999999762 1 22344555 8899999999999999999999999999
Q ss_pred EcC
Q 019405 329 DIK 331 (341)
Q Consensus 329 d~~ 331 (341)
+..
T Consensus 290 ~~~ 292 (316)
T 3bg1_A 290 KES 292 (316)
T ss_dssp EEC
T ss_pred EEC
Confidence 986
No 54
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-37 Score=265.97 Aligned_cols=282 Identities=10% Similarity=0.040 Sum_probs=223.8
Q ss_pred ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCc------ch
Q 019405 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD------LR 88 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~------~~ 88 (341)
..+++++.||.+++|++.....+ .+....+..|...+.+++|++++ +.+|++++.||.|++||+.+++ ..
T Consensus 80 ~~l~~~~~dg~v~vw~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~---~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 155 (416)
T 2pm9_A 80 KIIAGALDNGSLELYSTNEANNA-INSMARFSNHSSSVKTVKFNAKQ---DNVLASGGNNGEIFIWDMNKCTESPSNYTP 155 (416)
T ss_dssp SCEEEEESSSCEEEECCSSTTSC-CCEEEECCCSSSCCCEEEECSSS---TTBEEEECSSSCEEBCBTTTTSSCTTTCCC
T ss_pred CeEEEEccCCeEEEeeccccccc-ccchhhccCCccceEEEEEcCCC---CCEEEEEcCCCeEEEEECCCCccccccccc
Confidence 34677889999999999873222 13566788899999999998872 2389999999999999998876 22
Q ss_pred heeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeec-----CC
Q 019405 89 VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA-----SG 163 (341)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~-----~~ 163 (341)
..+. ....+...+.++.+.+.... .+++++.||.+.+|++.... .+..+.... ..
T Consensus 156 ~~~~-----~~~~~~~~v~~~~~~~~~~~-------~l~~~~~dg~v~iwd~~~~~--------~~~~~~~~~~~~~~~~ 215 (416)
T 2pm9_A 156 LTPG-----QSMSSVDEVISLAWNQSLAH-------VFASAGSSNFASIWDLKAKK--------EVIHLSYTSPNSGIKQ 215 (416)
T ss_dssp BCCC-----CSCCSSCCCCEEEECSSCTT-------EEEEESSSSCEEEEETTTTE--------EEEEECCCCCSSCCCC
T ss_pred cccc-----cccCCCCCeeEEEeCCCCCc-------EEEEEcCCCCEEEEECCCCC--------cceEEeccccccccCC
Confidence 2211 11235678888888776332 89999999999999986433 444444332 67
Q ss_pred ceEEEEecCCC-CEEEEeeCCC---eEEEEECCCC-ceeeecC-CCCCCccCccCCeeeeEEEEEecC-CCCEEEEEeCC
Q 019405 164 TIAFSKVDISE-KFSLFGGKGV---EVNVWDLDKC-EKIWTAK-PPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTND 236 (341)
Q Consensus 164 ~i~~~~~~~~~-~~l~~~~~d~---~v~i~d~~~~-~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~d 236 (341)
.+.+++|+|++ .++++++.|+ .|++||++++ +....+. . |...|.+++| +| ++.+|++++.|
T Consensus 216 ~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~---------~~~~v~~~~~--s~~~~~~l~s~~~d 284 (416)
T 2pm9_A 216 QLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQG---------HQKGILSLDW--CHQDEHLLLSSGRD 284 (416)
T ss_dssp CEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSC---------CSSCEEEEEE--CSSCSSCEEEEESS
T ss_pred ceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecC---------ccCceeEEEe--CCCCCCeEEEEeCC
Confidence 89999999997 6899999998 9999999986 4444444 3 3366999999 77 89999999999
Q ss_pred CeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCC-ceEEEEeCCCCEEEEECCCCeEEeEEec-----------------
Q 019405 237 HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLLGCFIG----------------- 298 (341)
Q Consensus 237 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~iwd~~~~~~~~~~~~----------------- 298 (341)
+.|++||+++++. +..+..|...|.+++|+|++ .+|++++.|+.|++||+.+++.......
T Consensus 285 g~v~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (416)
T 2pm9_A 285 NTVLLWNPESAEQ-LSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVS 363 (416)
T ss_dssp SEEEEECSSSCCE-EEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC-------------------
T ss_pred CCEEEeeCCCCcc-ceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccccccccc
Confidence 9999999998764 88899999999999999999 8999999999999999987653222111
Q ss_pred ------------------cccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCC
Q 019405 299 ------------------KCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR 333 (341)
Q Consensus 299 ------------------~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 333 (341)
+ ..++.+++|+|+|++|++++.|+.|+||++.+.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 364 REESKEKPSVFHLQAPTWY-GEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp ---CCSCCCSSCCCCCSTT-CCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred ccccccccccccccCCccc-cCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 3 667889999999999999999999999999874
No 55
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.6e-35 Score=253.79 Aligned_cols=271 Identities=13% Similarity=0.110 Sum_probs=213.0
Q ss_pred ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEec-cCCCCCceEEEEccCCeEEEeeCCCCcchheeec
Q 019405 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASI-DDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN 93 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~-~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 93 (341)
..+++++.||.|++|++.... ........+|...+.+++|++ +.. +|++++.|+.|++||+.+ +.+..+..
T Consensus 87 ~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~----~l~s~~~d~~i~iwd~~~-~~~~~~~~ 158 (383)
T 3ei3_B 87 TTVAVGSKGGDIILWDYDVQN---KTSFIQGMGPGDAITGMKFNQFNTN----QLFVSSIRGATTLRDFSG-SVIQVFAK 158 (383)
T ss_dssp TEEEEEEBTSCEEEEETTSTT---CEEEECCCSTTCBEEEEEEETTEEE----EEEEEETTTEEEEEETTS-CEEEEEEC
T ss_pred CEEEEEcCCCeEEEEeCCCcc---cceeeecCCcCCceeEEEeCCCCCC----EEEEEeCCCEEEEEECCC-CceEEEec
Confidence 468889999999999998651 122223346999999999998 444 799999999999999985 44455544
Q ss_pred cCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCC
Q 019405 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS 173 (341)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~ 173 (341)
+. .+...+.++.+.+... .+++++.|+.+.+|++.. ..+..+. .+...|.+++|+|+
T Consensus 159 ~~-----~~~~~v~~~~~~~~~~--------~l~~~~~d~~i~i~d~~~---------~~~~~~~-~h~~~v~~~~~~~~ 215 (383)
T 3ei3_B 159 TD-----SWDYWYCCVDVSVSRQ--------MLATGDSTGRLLLLGLDG---------HEIFKEK-LHKAKVTHAEFNPR 215 (383)
T ss_dssp CC-----CSSCCEEEEEEETTTT--------EEEEEETTSEEEEEETTS---------CEEEEEE-CSSSCEEEEEECSS
T ss_pred cC-----CCCCCeEEEEECCCCC--------EEEEECCCCCEEEEECCC---------CEEEEec-cCCCcEEEEEECCC
Confidence 21 2346788888877655 999999999999999831 1444444 36789999999999
Q ss_pred CC-EEEEeeCCCeEEEEECCC----CceeeecCCCCCCccCccCCeeeeEEEEEecC-CCCEEEEEeCCCeEEEEEcCCC
Q 019405 174 EK-FSLFGGKGVEVNVWDLDK----CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQVRLYDTSAQ 247 (341)
Q Consensus 174 ~~-~l~~~~~d~~v~i~d~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~ 247 (341)
++ ++++++.|+.|++||+++ +..+..+. |...|.+++| +| ++.+|++++.|+.|++||++++
T Consensus 216 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~----------~~~~v~~~~~--s~~~~~~l~~~~~d~~i~iwd~~~~ 283 (383)
T 3ei3_B 216 CDWLMATSSVDATVKLWDLRNIKDKNSYIAEMP----------HEKPVNAAYF--NPTDSTKLLTTDQRNEIRVYSSYDW 283 (383)
T ss_dssp CTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEE----------CSSCEEEEEE--CTTTSCEEEEEESSSEEEEEETTBT
T ss_pred CCCEEEEEeCCCEEEEEeCCCCCcccceEEEec----------CCCceEEEEE--cCCCCCEEEEEcCCCcEEEEECCCC
Confidence 98 999999999999999987 44444442 3366999999 88 9999999999999999999987
Q ss_pred CceeEEEEecC-----------------CCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEecc-ccCceeEEEe
Q 019405 248 RRPVMSFDFRE-----------------TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK-CSGSIRSIAR 309 (341)
Q Consensus 248 ~~~~~~~~~~~-----------------~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~-~~~~i~~~~~ 309 (341)
+. ...+..|. ..+..++|+|++++ +|+.|+.|++||+.+++++..+.++ +...+..++|
T Consensus 284 ~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~ 360 (383)
T 3ei3_B 284 SK-PDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKF 360 (383)
T ss_dssp TS-CSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEE
T ss_pred cc-ccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEE
Confidence 65 45555443 23445667777766 7789999999999999999999874 2567777899
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCC
Q 019405 310 HPTLPIIASCGLDSYLRFWDIKT 332 (341)
Q Consensus 310 ~~~~~~l~s~~~dg~v~iwd~~~ 332 (341)
+|++++|++++ |+.|++||+++
T Consensus 361 s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 361 SPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CTTSSEEEEEE-TTEEEEEECC-
T ss_pred ecCccEEEEec-CCcEEEEecCC
Confidence 99999999997 99999999975
No 56
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.4e-35 Score=255.22 Aligned_cols=268 Identities=14% Similarity=0.172 Sum_probs=215.4
Q ss_pred eeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCc------chheeeccCCCCCCCCCCceeeEeeeec
Q 019405 41 VVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD------LRVAISNAGDSGAQPEDDGIVGLHLFKR 114 (341)
Q Consensus 41 ~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (341)
....+.+|...|++++|++ ++|++|+.||.|+||++.+++ .+..+.. +...+.++.+.+.
T Consensus 8 ~~~~~~~h~~~i~~~~~~~------~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~--------h~~~v~~~~~~~~ 73 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN------SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFV--------HKSGLHHVDVLQA 73 (397)
T ss_dssp EEEESSCSSSCEEEEEECS------SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEEC--------CTTCEEEEEEEEE
T ss_pred hhhhhhhhhcCeEEEEecC------CeEEEEcCCCEEEEEECCCcccccCCCcceEEec--------CCCcEEEEEEecc
Confidence 4456778999999999976 379999999999999998877 4455544 5578889988876
Q ss_pred ----c---ccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeec----CCceEEEEec----CCCCE-EE
Q 019405 115 ----Q---REESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA----SGTIAFSKVD----ISEKF-SL 178 (341)
Q Consensus 115 ----~---~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~----~~~i~~~~~~----~~~~~-l~ 178 (341)
. . .+++++.||.+.+|++....... ...+..+.... ...|.+++|+ |++++ |+
T Consensus 74 ~~~~g~~~~--------~l~s~~~dg~i~iw~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~ 142 (397)
T 1sq9_A 74 IERDAFELC--------LVATTSFSGDLLFYRITREDETK---KVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLV 142 (397)
T ss_dssp EETTTEEEE--------EEEEEETTSCEEEEEEEECTTTC---CEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEE
T ss_pred cccCCcccc--------EEEEEcCCCCEEEEEccCCcccc---cccceeecccccccCCCcEEEEEEeeccCCCCceEEE
Confidence 4 4 89999999999999997654200 00134443321 4789999999 99999 99
Q ss_pred EeeCCCeEEEEECCC------Cceee-----ecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCC
Q 019405 179 FGGKGVEVNVWDLDK------CEKIW-----TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ 247 (341)
Q Consensus 179 ~~~~d~~v~i~d~~~------~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 247 (341)
+++.|+.|++||+++ ++.+. .+... ......|...+.+++| +|++ +|++++.|+.|++||+++.
T Consensus 143 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~--~~~~-~l~~~~~dg~i~i~d~~~~ 217 (397)
T 1sq9_A 143 ATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGT--VESPMTPSQFATSVDI--SERG-LIATGFNNGTVQISELSTL 217 (397)
T ss_dssp EEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEE--ECCSSSSCCCCCEEEE--CTTS-EEEEECTTSEEEEEETTTT
T ss_pred EEeCCCcEEEEeCCccccccccceeeccCcceeeee--eccccCCCCCceEEEE--CCCc-eEEEEeCCCcEEEEECCCC
Confidence 999999999999987 55444 33210 0000113466999999 8889 9999999999999999986
Q ss_pred CceeEEEEe---c---CCCeEEEEEcCCCceEEEEeCC---CCEEEEECCCCeEEeEEec-------------cccCcee
Q 019405 248 RRPVMSFDF---R---ETPIKAVAEEPDSFNIYIGNGS---GDLASVDIRTGKLLGCFIG-------------KCSGSIR 305 (341)
Q Consensus 248 ~~~~~~~~~---~---~~~v~~~~~~~~~~~l~~g~~d---g~i~iwd~~~~~~~~~~~~-------------~~~~~i~ 305 (341)
+ ++..+.. | ...|.+++|+|++.+|++++.| +.|++||+++++.+..+.. | ...|.
T Consensus 218 ~-~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~ 295 (397)
T 1sq9_A 218 R-PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAH-SSWVM 295 (397)
T ss_dssp E-EEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSB-SSCEE
T ss_pred c-eeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCccccccccccccc-CCcEE
Confidence 5 4888888 8 8999999999999999999999 9999999999999999988 7 89999
Q ss_pred EEEecCCCCEEEEEeCCCcEEEEEcCCCceeeeec
Q 019405 306 SIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVC 340 (341)
Q Consensus 306 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 340 (341)
+++|+|++++|++++.||.|++||+++++++.++.
T Consensus 296 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 330 (397)
T 1sq9_A 296 SLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN 330 (397)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred EEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence 99999999999999999999999999999887764
No 57
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=9.9e-36 Score=259.30 Aligned_cols=268 Identities=14% Similarity=0.222 Sum_probs=219.9
Q ss_pred CceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeec
Q 019405 14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN 93 (341)
Q Consensus 14 ~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 93 (341)
.-.+++++.||.|++|++.+. +....+.+|...+.++++ + +++|++|+.||+|++||+.+++.+..+..
T Consensus 143 ~~~l~~g~~dg~i~iwd~~~~-----~~~~~~~~h~~~v~~l~~--~----~~~l~sg~~dg~i~vwd~~~~~~~~~~~~ 211 (435)
T 1p22_A 143 DQKIVSGLRDNTIKIWDKNTL-----ECKRILTGHTGSVLCLQY--D----ERVIITGSSDSTVRVWDVNTGEMLNTLIH 211 (435)
T ss_dssp SSEEEEEESSSCEEEEESSSC-----CEEEEECCCSSCEEEEEC--C----SSEEEEEETTSCEEEEESSSCCEEEEECC
T ss_pred CCEEEEEeCCCeEEEEeCCCC-----eEEEEEcCCCCcEEEEEE--C----CCEEEEEcCCCeEEEEECCCCcEEEEEcC
Confidence 446789999999999998775 567788889999998887 3 44899999999999999999988877765
Q ss_pred cCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCC
Q 019405 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS 173 (341)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~ 173 (341)
+...+.++.+. .. .+++++.||.+.+|++...... ........+...|.++++ +
T Consensus 212 --------h~~~v~~l~~~--~~--------~l~s~s~dg~i~vwd~~~~~~~------~~~~~~~~~~~~v~~~~~--~ 265 (435)
T 1p22_A 212 --------HCEAVLHLRFN--NG--------MMVTCSKDRSIAVWDMASPTDI------TLRRVLVGHRAAVNVVDF--D 265 (435)
T ss_dssp --------CCSCEEEEECC--TT--------EEEEEETTSCEEEEECSSSSCC------EEEEEECCCSSCEEEEEE--E
T ss_pred --------CCCcEEEEEEc--CC--------EEEEeeCCCcEEEEeCCCCCCc------eeeeEecCCCCcEEEEEe--C
Confidence 44678777763 22 8999999999999998654311 112223356778999998 6
Q ss_pred CCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEE
Q 019405 174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS 253 (341)
Q Consensus 174 ~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 253 (341)
++++++++.|+.|++||+++++.+..+..+. ..|.++.| +++++++|+.|+.|++||+++++. +..
T Consensus 266 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---------~~v~~~~~----~~~~l~~g~~dg~i~iwd~~~~~~-~~~ 331 (435)
T 1p22_A 266 DKYIVSASGDRTIKVWNTSTCEFVRTLNGHK---------RGIACLQY----RDRLVVSGSSDNTIRLWDIECGAC-LRV 331 (435)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEECCS---------SCEEEEEE----ETTEEEEEETTSCEEEEETTTCCE-EEE
T ss_pred CCEEEEEeCCCeEEEEECCcCcEEEEEcCCC---------CcEEEEEe----CCCEEEEEeCCCeEEEEECCCCCE-EEE
Confidence 8899999999999999999999988887654 55888888 468999999999999999998764 888
Q ss_pred EEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCe---------EEeEEeccccCceeEEEecCCCCEEEEEeCCCc
Q 019405 254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK---------LLGCFIGKCSGSIRSIARHPTLPIIASCGLDSY 324 (341)
Q Consensus 254 ~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~---------~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~ 324 (341)
+.+|...|.+++| ++.+|++|+.||.|++||+++++ ++..+.+| .+.|.+++| ++.+|++++.||.
T Consensus 332 ~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~--~~~~l~s~s~Dg~ 406 (435)
T 1p22_A 332 LEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH-SGRVFRLQF--DEFQIVSSSHDDT 406 (435)
T ss_dssp ECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCC-SSCCCCEEE--CSSCEEECCSSSE
T ss_pred EeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCC-CCCeEEEEe--CCCEEEEEeCCCE
Confidence 9999999999999 67899999999999999998765 78888888 899999999 7889999999999
Q ss_pred EEEEEcCCCceee
Q 019405 325 LRFWDIKTRQLLS 337 (341)
Q Consensus 325 v~iwd~~~~~~~~ 337 (341)
|++||+.+.....
T Consensus 407 i~iwd~~~~~~~~ 419 (435)
T 1p22_A 407 ILIWDFLNDPAAQ 419 (435)
T ss_dssp EEEEC--------
T ss_pred EEEEECCCCCCcc
Confidence 9999998765543
No 58
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-36 Score=262.47 Aligned_cols=270 Identities=13% Similarity=0.162 Sum_probs=213.2
Q ss_pred ceeeec-cCCCCCceeEEEec-cCCCCCceEEEEccCCeEEEeeCCC---Ccchh-eeeccCCCCCCCCCCceeeEeeee
Q 019405 40 KVVERW-GDPHSSNCVLAASI-DDSQNDPLLAVARKNGLTDILNPLN---GDLRV-AISNAGDSGAQPEDDGIVGLHLFK 113 (341)
Q Consensus 40 ~~~~~~-~~~~~~~~~~~~s~-~~~~~~~~l~~~~~dg~i~iw~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 113 (341)
+++..+ .+|...|.+++|++ ++. +|++|+.||+|+|||+.+ +.... .... .+...+.++.+.+
T Consensus 53 ~~~~~~~~~h~~~V~~~~~s~~~~~----~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-------~h~~~v~~~~~~~ 121 (437)
T 3gre_A 53 KLIATLMENEPNSITSSAVSPGETP----YLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-------DCSSTVTQITMIP 121 (437)
T ss_dssp CEEEEECTTTTSCEEEEEEECSSSC----EEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-------ECSSCEEEEEECT
T ss_pred eEEeeeccCCCCceEEEEECCCCCC----EEEEecCCceEEEeECcccccCcccceeeec-------cCCCCEEEEEEeC
Confidence 566677 77999999999998 665 899999999999999876 33221 1221 2457899999886
Q ss_pred ccccccccccceeEEEcccceeEEEEeeeccc---ccccCCceEEEEEee---cCCceEEEE--ecCCCCEEEEeeCCCe
Q 019405 114 RQREESSSRSRTLLTCTTKGKASMRSIEVTKV---SAESSCSTVKSWNVC---ASGTIAFSK--VDISEKFSLFGGKGVE 185 (341)
Q Consensus 114 ~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~---~~~~~~~~v~~~~~~---~~~~i~~~~--~~~~~~~l~~~~~d~~ 185 (341)
... .+++++.||.+++|+++.... ........++..... +...+.++. ++++++++++++.|+.
T Consensus 122 ~~~--------~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~ 193 (437)
T 3gre_A 122 NFD--------AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSR 193 (437)
T ss_dssp TSS--------EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSE
T ss_pred CCC--------EEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCe
Confidence 555 899999999999999963211 110011122233222 345677776 5688999999999999
Q ss_pred EEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEE-ecCCCeEEE
Q 019405 186 VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD-FRETPIKAV 264 (341)
Q Consensus 186 v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~v~~~ 264 (341)
|++||+++++.+..+..+. |...|.+++| +|++.+|++++.||.|++||+++++ ++..+. .|..+|.++
T Consensus 194 i~iwd~~~~~~~~~~~~~~-------h~~~v~~~~~--s~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~ 263 (437)
T 3gre_A 194 VIIFDIRTLERLQIIENSP-------RHGAVSSICI--DEECCVLILGTTRGIIDIWDIRFNV-LIRSWSFGDHAPITHV 263 (437)
T ss_dssp EEEEETTTCCEEEEEECCG-------GGCCEEEEEE--CTTSCEEEEEETTSCEEEEETTTTE-EEEEEBCTTCEEEEEE
T ss_pred EEEEeCCCCeeeEEEccCC-------CCCceEEEEE--CCCCCEEEEEcCCCeEEEEEcCCcc-EEEEEecCCCCceEEE
Confidence 9999999999988887632 2356999999 8999999999999999999999855 477765 677799999
Q ss_pred EEc----CCCceEEEEeCCCCEEEEECCCCeEEeEEecc-------------------------ccCceeEEEecCCCCE
Q 019405 265 AEE----PDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK-------------------------CSGSIRSIARHPTLPI 315 (341)
Q Consensus 265 ~~~----~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~-------------------------~~~~i~~~~~~~~~~~ 315 (341)
+|+ |++.+|++|+.|+.|++||+++++++..+.+| |...|++++|+ ++++
T Consensus 264 ~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~ 342 (437)
T 3gre_A 264 EVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKI 342 (437)
T ss_dssp EECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEE
T ss_pred EeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceE
Confidence 665 46789999999999999999999998888754 35668899999 7789
Q ss_pred EEEEeCCCcEEEEEcCCCceeeee
Q 019405 316 IASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 316 l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
|++++.|+.|++||+.+++++..+
T Consensus 343 l~s~~~d~~i~~wd~~~~~~~~~~ 366 (437)
T 3gre_A 343 LLTDEATSSIVMFSLNELSSSKAV 366 (437)
T ss_dssp EEEEGGGTEEEEEETTCGGGCEEE
T ss_pred EEecCCCCeEEEEECCCcccceEE
Confidence 999999999999999999887765
No 59
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.2e-35 Score=250.87 Aligned_cols=280 Identities=10% Similarity=0.043 Sum_probs=197.0
Q ss_pred CeEEEEEecCccCccc-----eeeeccCCCCCceeEEEeccC-----CCCCceEEEEccCCeEEEeeCCCCcchhe-eec
Q 019405 25 LIKVIEARGEHGGVPK-----VVERWGDPHSSNCVLAASIDD-----SQNDPLLAVARKNGLTDILNPLNGDLRVA-ISN 93 (341)
Q Consensus 25 ~i~~~~~~~~~~g~~~-----~~~~~~~~~~~~~~~~~s~~~-----~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~ 93 (341)
.|++|++......... ....+..|+..+.+++++.+. ...+..|++++.|+.+|+|++........ ...
T Consensus 44 ~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~ 123 (365)
T 4h5i_A 44 KLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTS 123 (365)
T ss_dssp EEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEE
T ss_pred EEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeee
Confidence 4788988765221100 112456677777766654321 11112333445688899998865433222 221
Q ss_pred cCCCCCCCCCCceeeEeeeeccccccccccceeE--EEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEec
Q 019405 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL--TCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD 171 (341)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~ 171 (341)
.........+..+.++++.+... .++ +++.|+.++||++.... .+ ....+...|.+++|+
T Consensus 124 ~~~~~~~~~~~~~~~v~fSpDg~--------~la~as~~~d~~i~iwd~~~~~--------~~--~~~~~~~~V~~v~fs 185 (365)
T 4h5i_A 124 VDFDASTNADDYTKLVYISREGT--------VAAIASSKVPAIMRIIDPSDLT--------EK--FEIETRGEVKDLHFS 185 (365)
T ss_dssp ECSSCCCCTTCCEEEEEECTTSS--------CEEEEESCSSCEEEEEETTTTE--------EE--EEEECSSCCCEEEEC
T ss_pred eceeecCCcccCEEEEEEcCCCC--------EEEEEECCCCCEEEEeECCCCc--------EE--EEeCCCCceEEEEEc
Confidence 11111122334455555544333 554 44578999999986433 23 334577889999999
Q ss_pred CCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCC----eEEEEEcCCC
Q 019405 172 ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH----QVRLYDTSAQ 247 (341)
Q Consensus 172 ~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~----~i~iwd~~~~ 247 (341)
|+++++++++.+ .+.+|+..+++......... |...|.+++| +|++.++++++.|+ .+++|++...
T Consensus 186 pdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~-------~~~~v~~v~f--spdg~~l~~~s~d~~~~~~i~~~~~~~~ 255 (365)
T 4h5i_A 186 TDGKVVAYITGS-SLEVISTVTGSCIARKTDFD-------KNWSLSKINF--IADDTVLIAASLKKGKGIVLTKISIKSG 255 (365)
T ss_dssp TTSSEEEEECSS-CEEEEETTTCCEEEEECCCC-------TTEEEEEEEE--EETTEEEEEEEESSSCCEEEEEEEEETT
T ss_pred cCCceEEeccce-eEEEEEeccCcceeeeecCC-------CCCCEEEEEE--cCCCCEEEEEecCCcceeEEeecccccc
Confidence 999999999866 56777777776654332221 3467999999 88999999999887 6889998765
Q ss_pred Cce---eEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEE-eccccCceeEEEecCCCCEEEEEeCCC
Q 019405 248 RRP---VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCF-IGKCSGSIRSIARHPTLPIIASCGLDS 323 (341)
Q Consensus 248 ~~~---~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~s~~~dg 323 (341)
... ...+..|..+|++++|+|+|++||+|+.|+.|+|||+++++++..+ .+| ..+|++++|+|||++|+++|.|+
T Consensus 256 ~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH-~~~V~~v~fSpdg~~laS~S~D~ 334 (365)
T 4h5i_A 256 NTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAH-SFAITEVTISPDSTYVASVSAAN 334 (365)
T ss_dssp EEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSS-SSCEEEEEECTTSCEEEEEETTS
T ss_pred eecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcc-cCCEEEEEECCCCCEEEEEeCCC
Confidence 431 3456778899999999999999999999999999999999999886 566 99999999999999999999999
Q ss_pred cEEEEEcCCC
Q 019405 324 YLRFWDIKTR 333 (341)
Q Consensus 324 ~v~iwd~~~~ 333 (341)
+|+|||+...
T Consensus 335 tvrvw~ip~~ 344 (365)
T 4h5i_A 335 TIHIIKLPLN 344 (365)
T ss_dssp EEEEEECCTT
T ss_pred eEEEEEcCCC
Confidence 9999999653
No 60
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.8e-34 Score=242.59 Aligned_cols=286 Identities=13% Similarity=0.109 Sum_probs=223.2
Q ss_pred CceeeeecCCCCeEEEEEecCcc------CccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcc
Q 019405 14 PLRALTFDSLGLIKVIEARGEHG------GVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL 87 (341)
Q Consensus 14 ~~~~~~~~~~g~i~~~~~~~~~~------g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 87 (341)
++..++.++||....+....... ...+.. ...+|...+.+++|++++. +|++++ ||.|++||+.+++.
T Consensus 11 ~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~----~l~~~~-dg~i~iw~~~~~~~ 84 (337)
T 1gxr_A 11 PAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQI-NTLNHGEVVCAVTISNPTR----HVYTGG-KGCVKVWDISHPGN 84 (337)
T ss_dssp ECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEE-EEECCSSCCCEEEECSSSS----EEEEEC-BSEEEEEETTSTTC
T ss_pred ceeEEEECCCCCEEEeecCCCcEeccccCCccccc-eeccCCCceEEEEEecCCc----EEEEcC-CCeEEEEECCCCCc
Confidence 34566677777665433222100 001222 2336899999999987666 888888 99999999988765
Q ss_pred hheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEE
Q 019405 88 RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAF 167 (341)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~ 167 (341)
...+.... ...+...+.++.+.+... .+++++.+|.+.+|++..... ........+...+.+
T Consensus 85 ~~~~~~~~---~~~~~~~v~~~~~~~~~~--------~l~~~~~d~~i~~~d~~~~~~-------~~~~~~~~~~~~i~~ 146 (337)
T 1gxr_A 85 KSPVSQLD---CLNRDNYIRSCKLLPDGC--------TLIVGGEASTLSIWDLAAPTP-------RIKAELTSSAPACYA 146 (337)
T ss_dssp CSCSEEEE---CSCTTSBEEEEEECTTSS--------EEEEEESSSEEEEEECCCC---------EEEEEEECSSSCEEE
T ss_pred eeeeeccc---ccCCCCcEEEEEEcCCCC--------EEEEEcCCCcEEEEECCCCCc-------ceeeecccCCCceEE
Confidence 44433211 013557788888877655 899999999999999864321 122222345678999
Q ss_pred EEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCC
Q 019405 168 SKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ 247 (341)
Q Consensus 168 ~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 247 (341)
++|+|+++++++++.|+.|++||+++++....+..+. ..+.+++| +|++++|++++.|+.|++||++++
T Consensus 147 ~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~---------~~i~~~~~--~~~~~~l~~~~~dg~i~~~d~~~~ 215 (337)
T 1gxr_A 147 LAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT---------DGASCIDI--SNDGTKLWTGGLDNTVRSWDLREG 215 (337)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS---------SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTT
T ss_pred EEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeeccc---------CceEEEEE--CCCCCEEEEEecCCcEEEEECCCC
Confidence 9999999999999999999999999998888877654 56999999 889999999999999999999986
Q ss_pred CceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEE
Q 019405 248 RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRF 327 (341)
Q Consensus 248 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~i 327 (341)
+. +..+ .+...+.+++|+|++++|++++.++.|++||+++++.. .+..| ...|.+++|+|++++|++++.||.|++
T Consensus 216 ~~-~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~~ 291 (337)
T 1gxr_A 216 RQ-LQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLH-ESCVLSLKFAYCGKWFVSTGKDNLLNA 291 (337)
T ss_dssp EE-EEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCC-SSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred ce-Eeee-cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCC-ccceeEEEECCCCCEEEEecCCCcEEE
Confidence 53 5554 47789999999999999999999999999999988764 56666 889999999999999999999999999
Q ss_pred EEcCCCceeee
Q 019405 328 WDIKTRQLLSA 338 (341)
Q Consensus 328 wd~~~~~~~~~ 338 (341)
||+++++.+..
T Consensus 292 ~~~~~~~~~~~ 302 (337)
T 1gxr_A 292 WRTPYGASIFQ 302 (337)
T ss_dssp EETTTCCEEEE
T ss_pred EECCCCeEEEE
Confidence 99999887644
No 61
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-35 Score=252.78 Aligned_cols=257 Identities=12% Similarity=0.086 Sum_probs=204.4
Q ss_pred eeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCC--CCcchheeeccCCCCCCCCCCceeeEeeeeccccc
Q 019405 41 VVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPL--NGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREE 118 (341)
Q Consensus 41 ~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (341)
++..+.+|...|.+++|++++. +|++|+.||.|+|||+. +++.+..+.. |...+.++.|.+....
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~----~l~~~~~dg~i~iw~~~~~~~~~~~~~~~--------h~~~v~~~~~~~~~~~- 69 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGK----RLATCSSDKTIKIFEVEGETHKLIDTLTG--------HEGPVWRVDWAHPKFG- 69 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSS----EEEEEETTSCEEEEEEETTEEEEEEEECC--------CSSCEEEEEECCGGGC-
T ss_pred ccEEecCCcccEEEEEEcCCCC----EEEEEECCCcEEEEecCCCcceeeeEecC--------CCCcEEEEEeCCCCCC-
Confidence 4456788999999999998766 89999999999999997 4455555554 5578888988765211
Q ss_pred cccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCC--CCEEEEeeCCCeEEEEECCCCce
Q 019405 119 SSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS--EKFSLFGGKGVEVNVWDLDKCEK 196 (341)
Q Consensus 119 ~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~v~i~d~~~~~~ 196 (341)
..+++++.||.+++|++..... ..+..+ ..+...|.+++|+|+ ++++++++.|+.|++||+++...
T Consensus 70 -----~~l~s~~~dg~v~iwd~~~~~~------~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~ 137 (379)
T 3jrp_A 70 -----TILASCSYDGKVLIWKEENGRW------SQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT 137 (379)
T ss_dssp -----SEEEEEETTSCEEEEEEETTEE------EEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC
T ss_pred -----CEEEEeccCCEEEEEEcCCCce------eEeeee-cCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc
Confidence 1899999999999999875321 022222 236788999999999 99999999999999999987643
Q ss_pred e--eecCCCCCCccCccCCeeeeEEEEEecC-------------CCCEEEEEeCCCeEEEEEcCCCCc---eeEEEEecC
Q 019405 197 I--WTAKPPPKNSLGIFTPTWFTSAAFLSID-------------DHRKFVAGTNDHQVRLYDTSAQRR---PVMSFDFRE 258 (341)
Q Consensus 197 ~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------------~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~ 258 (341)
. ..+.. |...|.+++| +| ++.+|++++.|+.|++||++.... ....+..|.
T Consensus 138 ~~~~~~~~---------~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~ 206 (379)
T 3jrp_A 138 TSPIIIDA---------HAIGVNSASW--APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHS 206 (379)
T ss_dssp CCEEEEEC---------CTTCEEEEEE--CCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCS
T ss_pred eeeEEecC---------CCCceEEEEE--cCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEeccc
Confidence 2 22323 3356999999 66 689999999999999999987653 345677799
Q ss_pred CCeEEEEEcCC---CceEEEEeCCCCEEEEECCCCe-----EEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEc
Q 019405 259 TPIKAVAEEPD---SFNIYIGNGSGDLASVDIRTGK-----LLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDI 330 (341)
Q Consensus 259 ~~v~~~~~~~~---~~~l~~g~~dg~i~iwd~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~ 330 (341)
..|.+++|+|+ +.+|++++.||.|++||+++++ .+.....| ...|++++|+|++++|++++.||.|++||+
T Consensus 207 ~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~ 285 (379)
T 3jrp_A 207 DWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF-PDVLWRASWSLSGNVLALSGGDNKVTLWKE 285 (379)
T ss_dssp SCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCC-SSCEEEEEECSSSCCEEEEESSSSEEEEEE
T ss_pred CcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccC-CCcEEEEEEcCCCCEEEEecCCCcEEEEeC
Confidence 99999999999 8999999999999999999863 22222234 789999999999999999999999999999
Q ss_pred CCCc
Q 019405 331 KTRQ 334 (341)
Q Consensus 331 ~~~~ 334 (341)
.++.
T Consensus 286 ~~~~ 289 (379)
T 3jrp_A 286 NLEG 289 (379)
T ss_dssp EETT
T ss_pred CCCC
Confidence 8544
No 62
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=9.8e-35 Score=251.84 Aligned_cols=273 Identities=12% Similarity=0.096 Sum_probs=222.9
Q ss_pred ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 94 (341)
-.+++++.||.|++|++... +....+..|...+.+++|++++. +|++|+.|+.|++||+.+++.+..+..
T Consensus 110 ~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~h~~~v~~~~~~~~~~----~l~s~s~d~~i~iwd~~~~~~~~~~~~- 179 (420)
T 3vl1_A 110 RRFILGTTEGDIKVLDSNFN-----LQREIDQAHVSEITKLKFFPSGE----ALISSSQDMQLKIWSVKDGSNPRTLIG- 179 (420)
T ss_dssp CEEEEEETTSCEEEECTTSC-----EEEEETTSSSSCEEEEEECTTSS----EEEEEETTSEEEEEETTTCCCCEEEEC-
T ss_pred CEEEEEECCCCEEEEeCCCc-----ceeeecccccCccEEEEECCCCC----EEEEEeCCCeEEEEeCCCCcCceEEcC-
Confidence 45888999999999998765 56667788999999999988765 899999999999999999988888776
Q ss_pred CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEee--------------
Q 019405 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC-------------- 160 (341)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~-------------- 160 (341)
|...+.++.+.+... .+++++.||.+++|++.... .+..+...
T Consensus 180 -------h~~~v~~~~~~~~~~--------~l~s~~~d~~v~iwd~~~~~--------~~~~~~~~~~~~~~v~~~~~~~ 236 (420)
T 3vl1_A 180 -------HRATVTDIAIIDRGR--------NVLSASLDGTIRLWECGTGT--------TIHTFNRKENPHDGVNSIALFV 236 (420)
T ss_dssp -------CSSCEEEEEEETTTT--------EEEEEETTSCEEEEETTTTE--------EEEEECBTTBTTCCEEEEEEEE
T ss_pred -------CCCcEEEEEEcCCCC--------EEEEEcCCCcEEEeECCCCc--------eeEEeecCCCCCCCccEEEEec
Confidence 457788888877655 89999999999999986543 22222210
Q ss_pred ---------cCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCC-EE
Q 019405 161 ---------ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KF 230 (341)
Q Consensus 161 ---------~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l 230 (341)
+...+.+++|+|+++++++++.||.|++||+++++....+... |...|.+++| +|++. +|
T Consensus 237 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--------~~~~v~~~~~--~~~~~~~l 306 (420)
T 3vl1_A 237 GTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSK--------FTCSCNSLTV--DGNNANYI 306 (420)
T ss_dssp CCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCT--------TSSCEEEEEE--CSSCTTEE
T ss_pred CCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccc--------cCCCceeEEE--eCCCCCEE
Confidence 1245666777899999999999999999999998877776542 2356999999 88888 99
Q ss_pred EEEeCCCeEEEEEcCCCCceeEEEEe-cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCe---------EEeEEeccc
Q 019405 231 VAGTNDHQVRLYDTSAQRRPVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK---------LLGCFIGKC 300 (341)
Q Consensus 231 ~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~---------~~~~~~~~~ 300 (341)
++++.||.|++||+++++.++..+.. |...+.++.+ +++++|++++.|+.|++||+...+ ....+..+
T Consensus 307 ~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~- 384 (420)
T 3vl1_A 307 YAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSN- 384 (420)
T ss_dssp EEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCS-
T ss_pred EEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccC-
Confidence 99999999999999987766778877 6667888755 577899999999999999987631 12234455
Q ss_pred cCceeEEEecCCCC---EEEEEeCCCcEEEEEcCC
Q 019405 301 SGSIRSIARHPTLP---IIASCGLDSYLRFWDIKT 332 (341)
Q Consensus 301 ~~~i~~~~~~~~~~---~l~s~~~dg~v~iwd~~~ 332 (341)
...|.+++|+|+++ .+++++.+|.+.+|++++
T Consensus 385 ~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 385 DDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp SCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred CcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 78999999999999 788888999999999874
No 63
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2e-35 Score=254.92 Aligned_cols=278 Identities=8% Similarity=0.084 Sum_probs=218.5
Q ss_pred CCCeEEEEEecCccCccceeeeccCCCCCceeEEEec-cCCCCCceEEEEccCCeEEEeeCCCCcchheeeccC-----C
Q 019405 23 LGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASI-DDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAG-----D 96 (341)
Q Consensus 23 ~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~-~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-----~ 96 (341)
++.+++|++... +....+..|...+.+++|++ ++. +|++|+.||.|++||+.+++....+.... .
T Consensus 22 ~~~~~v~~~~~~-----~~~~~~~~h~~~v~~~~~s~~~~~----~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 92 (408)
T 4a11_B 22 ESTRRVLGLELN-----KDRDVERIHGGGINTLDIEPVEGR----YMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGR 92 (408)
T ss_dssp HHHHHHHTEEEC-----TTEEECCCCSSCEEEEEECTTTCC----EEEEEETTSCEEEEECCCCSSSSCEEECEEEEECT
T ss_pred cCcceeeccccC-----cceeeeeccCCcEEEEEEecCCCC----EEEEEcCCCeEEEEECCCCcccceEeccccccccc
Confidence 344566766654 34446777999999999987 655 89999999999999999887766654210 0
Q ss_pred CCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCC---
Q 019405 97 SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS--- 173 (341)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~--- 173 (341)
.....+...+.++.+.+.... .+++++.||.+.+|++.... .+..+. +...+.++.+++.
T Consensus 93 ~~~~~~~~~v~~~~~~~~~~~-------~l~s~~~d~~i~iwd~~~~~--------~~~~~~--~~~~~~~~~~~~~~~~ 155 (408)
T 4a11_B 93 DHPDVHRYSVETVQWYPHDTG-------MFTSSSFDKTLKVWDTNTLQ--------TADVFN--FEETVYSHHMSPVSTK 155 (408)
T ss_dssp TCTTCCSSCEEEEEECTTCTT-------CEEEEETTSEEEEEETTTTE--------EEEEEE--CSSCEEEEEECSSCSS
T ss_pred cccccCCCcEEEEEEccCCCc-------EEEEEeCCCeEEEeeCCCCc--------cceecc--CCCceeeeEeecCCCC
Confidence 111236688999988774432 89999999999999986433 334443 5678899999884
Q ss_pred CCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCC-EEEEEeCCCeEEEEEcCCCCceeE
Q 019405 174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQVRLYDTSAQRRPVM 252 (341)
Q Consensus 174 ~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~ 252 (341)
+.++++++.|+.|++||+++++....+..+. ..|.+++| +|++. +|++++.|+.|++||++....++.
T Consensus 156 ~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~---------~~v~~~~~--~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~ 224 (408)
T 4a11_B 156 HCLVAVGTRGPKVQLCDLKSGSCSHILQGHR---------QEILAVSW--SPRYDYILATASADSRVKLWDVRRASGCLI 224 (408)
T ss_dssp CCEEEEEESSSSEEEEESSSSCCCEEECCCC---------SCEEEEEE--CSSCTTEEEEEETTSCEEEEETTCSSCCSE
T ss_pred CcEEEEEcCCCeEEEEeCCCcceeeeecCCC---------CcEEEEEE--CCCCCcEEEEEcCCCcEEEEECCCCCcccc
Confidence 4599999999999999999988887777654 56999999 78888 589999999999999988664455
Q ss_pred EE---------------EecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCC---------------------------
Q 019405 253 SF---------------DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG--------------------------- 290 (341)
Q Consensus 253 ~~---------------~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~--------------------------- 290 (341)
.+ ..|...|.+++|+|++++|++++.||.|++||+.++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (408)
T 4a11_B 225 TLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCS 304 (408)
T ss_dssp ECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSS
T ss_pred cccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCC
Confidence 55 568889999999999999999999999999998754
Q ss_pred --------------------eEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeee
Q 019405 291 --------------------KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSA 338 (341)
Q Consensus 291 --------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 338 (341)
+++..+.+| ...|++++|+|++++|++++.||.|++||+++++.+..
T Consensus 305 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 371 (408)
T 4a11_B 305 SEFVFVPYGSTIAVYTVYSGEQITMLKGH-YKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPD 371 (408)
T ss_dssp SCEEEEEETTEEEEEETTTCCEEEEECCC-SSCEEEEEEETTTTEEEEEETTSCEEEEEECC------
T ss_pred ceEEEEecCCEEEEEECcCCcceeeeccC-CCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCC
Confidence 345566677 88999999999999999999999999999999887654
No 64
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.8e-34 Score=250.93 Aligned_cols=266 Identities=15% Similarity=0.227 Sum_probs=227.6
Q ss_pred ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 94 (341)
-.+++++.||.|++|++.+. +.+..+.+|...+.+++++ +++|++|+.||+|++||+.+++.+..+..
T Consensus 130 ~~l~sg~~dg~i~vwd~~~~-----~~~~~~~~h~~~v~~~~~~------~~~l~s~~~dg~i~vwd~~~~~~~~~~~~- 197 (445)
T 2ovr_B 130 NRIVSGSDDNTLKVWSAVTG-----KCLRTLVGHTGGVWSSQMR------DNIIISGSTDRTLKVWNAETGECIHTLYG- 197 (445)
T ss_dssp TEEEEEETTSCEEEEETTTC-----CEEEECCCCSSCEEEEEEE------TTEEEEEETTSCEEEEETTTTEEEEEECC-
T ss_pred CEEEEEECCCcEEEEECCCC-----cEEEEEcCCCCCEEEEEec------CCEEEEEeCCCeEEEEECCcCcEEEEECC-
Confidence 45789999999999999876 6777888999999999886 23799999999999999999988877765
Q ss_pred CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC
Q 019405 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (341)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~ 174 (341)
+...+.++.+. .. .+++++.||.+.+|++.... .+..+. .+...|.++++ ++
T Consensus 198 -------h~~~v~~~~~~--~~--------~l~s~s~dg~i~~wd~~~~~--------~~~~~~-~~~~~v~~~~~--~~ 249 (445)
T 2ovr_B 198 -------HTSTVRCMHLH--EK--------RVVSGSRDATLRVWDIETGQ--------CLHVLM-GHVAAVRCVQY--DG 249 (445)
T ss_dssp -------CSSCEEEEEEE--TT--------EEEEEETTSEEEEEESSSCC--------EEEEEE-CCSSCEEEEEE--CS
T ss_pred -------CCCcEEEEEec--CC--------EEEEEeCCCEEEEEECCCCc--------EEEEEc-CCcccEEEEEE--CC
Confidence 44677777762 22 89999999999999986433 344444 36778999998 68
Q ss_pred CEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEE
Q 019405 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF 254 (341)
Q Consensus 175 ~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 254 (341)
+++++++.|+.|++||+++++.+..+..+. ..|.++.| ++.++++++.|+.|++||+++++. +..+
T Consensus 250 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~v~~~~~----~~~~l~~~~~d~~i~i~d~~~~~~-~~~~ 315 (445)
T 2ovr_B 250 RRVVSGAYDFMVKVWDPETETCLHTLQGHT---------NRVYSLQF----DGIHVVSGSLDTSIRVWDVETGNC-IHTL 315 (445)
T ss_dssp SCEEEEETTSCEEEEEGGGTEEEEEECCCS---------SCEEEEEE----CSSEEEEEETTSCEEEEETTTCCE-EEEE
T ss_pred CEEEEEcCCCEEEEEECCCCcEeEEecCCC---------CceEEEEE----CCCEEEEEeCCCeEEEEECCCCCE-EEEE
Confidence 899999999999999999999888887654 55888888 788999999999999999998764 8888
Q ss_pred EecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEec---cccCceeEEEecCCCCEEEEEeCCCcEEEEEcC
Q 019405 255 DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG---KCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331 (341)
Q Consensus 255 ~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~ 331 (341)
..|...+.++.++ +.+|++|+.||.|++||+++++.+..+.. | ...|++++|+ +++|++++.||.|++||+.
T Consensus 316 ~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~ 390 (445)
T 2ovr_B 316 TGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKH-QSAVTCLQFN--KNFVITSSDDGTVKLWDLK 390 (445)
T ss_dssp CCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSC-SSCEEEEEEC--SSEEEEEETTSEEEEEETT
T ss_pred cCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCC-CCCEEEEEEC--CCEEEEEeCCCeEEEEECC
Confidence 8899999988875 56999999999999999999999999986 5 7899999995 5799999999999999999
Q ss_pred CCceeeee
Q 019405 332 TRQLLSAV 339 (341)
Q Consensus 332 ~~~~~~~~ 339 (341)
+++.+..+
T Consensus 391 ~~~~~~~~ 398 (445)
T 2ovr_B 391 TGEFIRNL 398 (445)
T ss_dssp TCCEEEEE
T ss_pred CCceeeee
Confidence 99988776
No 65
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.5e-36 Score=260.66 Aligned_cols=286 Identities=12% Similarity=0.117 Sum_probs=218.8
Q ss_pred ceeeeecCCCCeEEEEEecCccCc-cceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCC---CCcchhe
Q 019405 15 LRALTFDSLGLIKVIEARGEHGGV-PKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPL---NGDLRVA 90 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~---~~~~~~~ 90 (341)
-.+++++.||.|++|++.....+. .+....+ .|...+.+++|++++. +|++|+.||.|++||++ +++....
T Consensus 77 ~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~----~l~s~s~dg~i~vwd~~~~~~~~~~~~ 151 (437)
T 3gre_A 77 PYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD----AFAVSSKDGQIIVLKVNHYQQESEVKF 151 (437)
T ss_dssp CEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS----EEEEEETTSEEEEEEEEEEEETTEEEE
T ss_pred CEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC----EEEEEeCCCEEEEEEeccccCCceeec
Confidence 468889999999999998732221 2222334 4889999999997655 89999999999999995 5555444
Q ss_pred eeccC--CCCCCC--CCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEee-cCCce
Q 019405 91 ISNAG--DSGAQP--EDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC-ASGTI 165 (341)
Q Consensus 91 ~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~-~~~~i 165 (341)
...+. ...+.+ +...+.++.+..... ...+++++.|+.+.+|++.... .+..+... +...|
T Consensus 152 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~~~h~~~v 217 (437)
T 3gre_A 152 LNCECIRKINLKNFGKNEYAVRMRAFVNEE------KSLLVALTNLSRVIIFDIRTLE--------RLQIIENSPRHGAV 217 (437)
T ss_dssp EEEEEEEEEEGGGGSSCCCEEEEEEEECSS------CEEEEEEETTSEEEEEETTTCC--------EEEEEECCGGGCCE
T ss_pred cccceeEEEEccCcccccCceEEEEEEcCC------CCEEEEEeCCCeEEEEeCCCCe--------eeEEEccCCCCCce
Confidence 33221 011112 445666666543222 1289999999999999986433 45555543 67899
Q ss_pred EEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEe--cCCCCEEEEEeCCCeEEEEE
Q 019405 166 AFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS--IDDHRKFVAGTNDHQVRLYD 243 (341)
Q Consensus 166 ~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~l~~~~~d~~i~iwd 243 (341)
.+++|+|++++|++|+.||.|++||+++++.+..+... +...|.+++|.| ++++.+|++++.|+.|++||
T Consensus 218 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--------~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd 289 (437)
T 3gre_A 218 SSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFG--------DHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWN 289 (437)
T ss_dssp EEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCT--------TCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEE
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecC--------CCCceEEEEeccccCCCccEEEEEcCCCcEEEEE
Confidence 99999999999999999999999999998888776522 236699997743 35688999999999999999
Q ss_pred cCCCCceeEEEEe--------------------------cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEe
Q 019405 244 TSAQRRPVMSFDF--------------------------RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI 297 (341)
Q Consensus 244 ~~~~~~~~~~~~~--------------------------~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~ 297 (341)
+++++. +..+.. |...|++++|+ ++++|++|+.|+.|++||+.+++.+..+.
T Consensus 290 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 367 (437)
T 3gre_A 290 FVKGHC-QYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVI 367 (437)
T ss_dssp TTTTEE-EEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEE
T ss_pred cCCCcE-EEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEe
Confidence 998664 566654 44558888998 77899999999999999999988777776
Q ss_pred cc------------------------------------ccCceeEEEecCC--CCEEEEEeCCCcEEEEE
Q 019405 298 GK------------------------------------CSGSIRSIARHPT--LPIIASCGLDSYLRFWD 329 (341)
Q Consensus 298 ~~------------------------------------~~~~i~~~~~~~~--~~~l~s~~~dg~v~iwd 329 (341)
+| |.+.|++++|+++ +.+|++++.||.|+||+
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 368 SPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp CC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 53 4889999999998 77999999999999995
No 66
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1e-34 Score=248.74 Aligned_cols=260 Identities=15% Similarity=0.134 Sum_probs=209.5
Q ss_pred ceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccc
Q 019405 40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES 119 (341)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (341)
++...+.+|...+.+++|++++. ++|++|+.||.|+|||+.+++....+... .+...+.++.|.+.+..
T Consensus 64 ~~~~~~~~h~~~v~~~~~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~h~~~v~~~~~~~~~~~-- 132 (383)
T 3ei3_B 64 KLHRTASPFDRRVTSLEWHPTHP---TTVAVGSKGGDIILWDYDVQNKTSFIQGM------GPGDAITGMKFNQFNTN-- 132 (383)
T ss_dssp EEEEEECCCSSCEEEEEECSSCT---TEEEEEEBTSCEEEEETTSTTCEEEECCC------STTCBEEEEEEETTEEE--
T ss_pred ceEEeccCCCCCEEEEEECCCCC---CEEEEEcCCCeEEEEeCCCcccceeeecC------CcCCceeEEEeCCCCCC--
Confidence 45567788999999999998762 38999999999999999988776665531 35688999988773332
Q ss_pred ccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeec--CCceEEEEecCCCCEEEEeeCCCeEEEEECCCCcee
Q 019405 120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA--SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI 197 (341)
Q Consensus 120 ~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~ 197 (341)
.+++++.|+.+.+|++.. +.+..+.... ...|.+++|+|++++|++++.|+.|++||+ +++.+
T Consensus 133 -----~l~s~~~d~~i~iwd~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~ 197 (383)
T 3ei3_B 133 -----QLFVSSIRGATTLRDFSG---------SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEI 197 (383)
T ss_dssp -----EEEEEETTTEEEEEETTS---------CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEE
T ss_pred -----EEEEEeCCCEEEEEECCC---------CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEE
Confidence 899999999999999862 2444444322 367999999999999999999999999999 56677
Q ss_pred eecCCCCCCccCccCCeeeeEEEEEecCCCC-EEEEEeCCCeEEEEEcCCCC---ceeEEEEecCCCeEEEEEcC-CCce
Q 019405 198 WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQVRLYDTSAQR---RPVMSFDFRETPIKAVAEEP-DSFN 272 (341)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~~~-~~~~ 272 (341)
..+..+. ..|.+++| +|+++ +|++++.|+.|++||+++.+ ..+..+ .|...|.+++|+| ++.+
T Consensus 198 ~~~~~h~---------~~v~~~~~--~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~ 265 (383)
T 3ei3_B 198 FKEKLHK---------AKVTHAEF--NPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTK 265 (383)
T ss_dssp EEEECSS---------SCEEEEEE--CSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCE
T ss_pred EEeccCC---------CcEEEEEE--CCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCE
Confidence 7776543 66999999 88888 99999999999999999732 224444 6999999999999 9999
Q ss_pred EEEEeCCCCEEEEECCCCeEEeEEeccc------c----------CceeEEEecCCCCEEEEEeCCCcEEEEEcCCCcee
Q 019405 273 IYIGNGSGDLASVDIRTGKLLGCFIGKC------S----------GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLL 336 (341)
Q Consensus 273 l~~g~~dg~i~iwd~~~~~~~~~~~~~~------~----------~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 336 (341)
|++++.|+.|++||+++++.+..+.+|. . ..+..++|+|++++ +++.|+.|++||+.+++++
T Consensus 266 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~ 343 (383)
T 3ei3_B 266 LLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLV 343 (383)
T ss_dssp EEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEE
T ss_pred EEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCcee
Confidence 9999999999999999888777766541 1 23444667777766 7789999999999999988
Q ss_pred eee
Q 019405 337 SAV 339 (341)
Q Consensus 337 ~~~ 339 (341)
.++
T Consensus 344 ~~l 346 (383)
T 3ei3_B 344 HQL 346 (383)
T ss_dssp EEE
T ss_pred eee
Confidence 776
No 67
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=4.7e-34 Score=240.44 Aligned_cols=264 Identities=11% Similarity=0.142 Sum_probs=209.7
Q ss_pred ceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccc
Q 019405 40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES 119 (341)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (341)
++..++.+|.+.|++++|+++.. ++|+||+.|++|+|||+.+.+......... ...|...+.++.+.+...
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~---~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~---l~~h~~~V~~~~~s~dg~--- 99 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFP---DMILSASRDKTIIMWKLTRDETNYGIPQRA---LRGHSHFVSDVVISSDGQ--- 99 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCT---TEEEEEETTSCEEEEEECCSSSCSEEEEEE---ECCCSSCEEEEEECTTSS---
T ss_pred EEEEEECCccCCEEEEEEeCCCC---CEEEEEcCCCeEEEEECCCCCcccceeeEE---EeCCCCCEEEEEECCCCC---
Confidence 45567899999999999998642 389999999999999998755432211100 113567888888876655
Q ss_pred ccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeee
Q 019405 120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT 199 (341)
Q Consensus 120 ~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~ 199 (341)
.+++++.|+.+.+|+..... .......+...+....++++++++++++.|+.+++||+........
T Consensus 100 -----~l~s~~~d~~i~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~ 165 (340)
T 4aow_A 100 -----FALSGSWDGTLRLWDLTTGT---------TTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTV 165 (340)
T ss_dssp -----EEEEEETTSEEEEEETTTTE---------EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEE
T ss_pred -----EEEEEcccccceEEeecccc---------eeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEE
Confidence 89999999999999975332 2333334566788889999999999999999999999976554332
Q ss_pred -cCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeC
Q 019405 200 -AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG 278 (341)
Q Consensus 200 -~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~ 278 (341)
... |...+..++|.+.+...++++++.|+.|++||+++.+. +..+.+|..+|++++|+|++++|++|+.
T Consensus 166 ~~~~---------~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~-~~~~~~h~~~v~~~~~s~~~~~l~s~s~ 235 (340)
T 4aow_A 166 QDES---------HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL-KTNHIGHTGYLNTVTVSPDGSLCASGGK 235 (340)
T ss_dssp CSSS---------CSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred Eecc---------ccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCce-eeEecCCCCcEEEEEECCCCCEEEEEeC
Confidence 222 33568899995444556889999999999999998664 8888899999999999999999999999
Q ss_pred CCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 279 SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 279 dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
|+.|++||+++.+.+..+..+ ..|.+++|+|++.++ +++.|+.|++||++++.++..+
T Consensus 236 Dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~ 293 (340)
T 4aow_A 236 DGQAMLWDLNEGKHLYTLDGG--DIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDEL 293 (340)
T ss_dssp TCEEEEEETTTTEEEEEEECS--SCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEE
T ss_pred CCeEEEEEeccCceeeeecCC--ceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEec
Confidence 999999999999999988864 689999999987654 5667999999999988776654
No 68
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=2e-35 Score=254.82 Aligned_cols=277 Identities=15% Similarity=0.148 Sum_probs=219.8
Q ss_pred eecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEec-cCCCCCceEEEEccCCeEEEeeCCCC-------cchhe
Q 019405 19 TFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASI-DDSQNDPLLAVARKNGLTDILNPLNG-------DLRVA 90 (341)
Q Consensus 19 ~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~-~~~~~~~~l~~~~~dg~i~iw~~~~~-------~~~~~ 90 (341)
+++.+|.|++|++.... ...+....+.+|...|.+++|++ ++. +|++|+.||+|+|||+.++ +.+..
T Consensus 52 ~~~~~g~i~v~~~~~~~-~~~~~~~~~~~h~~~V~~~~~~p~~~~----~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~ 126 (402)
T 2aq5_A 52 EASGGGAFLVLPLGKTG-RVDKNVPLVCGHTAPVLDIAWCPHNDN----VIASGSEDCTVMVWEIPDGGLVLPLREPVIT 126 (402)
T ss_dssp CCSSSCCEEEEETTCCE-ECCTTCCCBCCCSSCEEEEEECTTCTT----EEEEEETTSEEEEEECCTTCCSSCBCSCSEE
T ss_pred EEcCCCEEEEEECccCC-CCCCCCceEecCCCCEEEEEeCCCCCC----EEEEEeCCCeEEEEEccCCCCccccCCceEE
Confidence 47889999999986641 11123446778999999999998 554 8999999999999999887 34445
Q ss_pred eeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEE-eecCCceEEEE
Q 019405 91 ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN-VCASGTIAFSK 169 (341)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~-~~~~~~i~~~~ 169 (341)
+.. |...+.++.+.+.... .+++++.||.+.+|++.... .+..+. ..+...|.+++
T Consensus 127 ~~~--------h~~~v~~~~~~p~~~~-------~l~s~~~dg~i~iwd~~~~~--------~~~~~~~~~~~~~v~~~~ 183 (402)
T 2aq5_A 127 LEG--------HTKRVGIVAWHPTAQN-------VLLSAGCDNVILVWDVGTGA--------AVLTLGPDVHPDTIYSVD 183 (402)
T ss_dssp EEC--------CSSCEEEEEECSSBTT-------EEEEEETTSCEEEEETTTTE--------EEEEECTTTCCSCEEEEE
T ss_pred ecC--------CCCeEEEEEECcCCCC-------EEEEEcCCCEEEEEECCCCC--------ccEEEecCCCCCceEEEE
Confidence 544 5578888888776532 89999999999999986433 444442 34678999999
Q ss_pred ecCCCCEEEEeeCCCeEEEEECCCCceeeec-CCCCCCccCccCCeeeeEEEEEecCCCCEEEEE---eCCCeEEEEEcC
Q 019405 170 VDISEKFSLFGGKGVEVNVWDLDKCEKIWTA-KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG---TNDHQVRLYDTS 245 (341)
Q Consensus 170 ~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~---~~d~~i~iwd~~ 245 (341)
|+|++++|++++.|+.|++||+++++.+..+ ..+.. ..+.++.| +|++.+|+++ +.|+.|++||++
T Consensus 184 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--------~~~~~~~~--~~~~~~l~~g~~~~~d~~i~iwd~~ 253 (402)
T 2aq5_A 184 WSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEG--------TRPVHAVF--VSEGKILTTGFSRMSERQVALWDTK 253 (402)
T ss_dssp ECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCS--------SSCCEEEE--CSTTEEEEEEECTTCCEEEEEEETT
T ss_pred ECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCC--------CcceEEEE--cCCCcEEEEeccCCCCceEEEEcCc
Confidence 9999999999999999999999999888877 44432 23788899 8899999999 789999999999
Q ss_pred CCCceeEEEE-ecCCCeEEEEEcCCCceEE-EEeCCCCEEEEECCCCeE-EeEEecc-ccCceeEEEecCCCCEEEEEeC
Q 019405 246 AQRRPVMSFD-FRETPIKAVAEEPDSFNIY-IGNGSGDLASVDIRTGKL-LGCFIGK-CSGSIRSIARHPTLPIIASCGL 321 (341)
Q Consensus 246 ~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~-~g~~dg~i~iwd~~~~~~-~~~~~~~-~~~~i~~~~~~~~~~~l~s~~~ 321 (341)
+.+.++.... .|...+.+++|+|++++|+ +|+.|+.|++||+.+++. +..+..+ +...|.+++|+|++.++++ .
T Consensus 254 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~ 331 (402)
T 2aq5_A 254 HLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--K 331 (402)
T ss_dssp BCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--G
T ss_pred cccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--c
Confidence 8765454444 4677899999999999886 455799999999998873 4444433 2589999999999988764 5
Q ss_pred CCcEEEEEcCCCce
Q 019405 322 DSYLRFWDIKTRQL 335 (341)
Q Consensus 322 dg~v~iwd~~~~~~ 335 (341)
|+.+++|++.++++
T Consensus 332 ~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 332 CEIARFYKLHERKC 345 (402)
T ss_dssp TEEEEEEEEETTEE
T ss_pred ceeEEEEEcCCCcE
Confidence 66999999998765
No 69
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6e-36 Score=255.83 Aligned_cols=274 Identities=10% Similarity=0.074 Sum_probs=203.6
Q ss_pred ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCc---chhee
Q 019405 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD---LRVAI 91 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~ 91 (341)
-.+++++.||.|++|++... .++....+.+|...+.+++|++++. +|++++.|++|+|||+.+++ ....+
T Consensus 24 ~~l~~~~~d~~i~iw~~~~~---~~~~~~~~~~h~~~v~~~~~s~~~~----~l~s~s~d~~v~vwd~~~~~~~~~~~~~ 96 (377)
T 3dwl_C 24 TEFVTTTATNQVELYEQDGN---GWKHARTFSDHDKIVTCVDWAPKSN----RIVTCSQDRNAYVYEKRPDGTWKQTLVL 96 (377)
T ss_dssp SEEECCCSSSCBCEEEEETT---EEEECCCBCCCSSCEEEEEECTTTC----CEEEEETTSSEEEC------CCCCEEEC
T ss_pred CEEEEecCCCEEEEEEccCC---ceEEEEEEecCCceEEEEEEeCCCC----EEEEEeCCCeEEEEEcCCCCceeeeeEe
Confidence 35778889999999999864 2245567888999999999988765 89999999999999998876 22222
Q ss_pred eccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEec
Q 019405 92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD 171 (341)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~ 171 (341)
. .+...+.++.+.+... .+++++.|+.+++|+++.... ...++.+...|...|.+++|+
T Consensus 97 ~--------~~~~~v~~~~~~~~~~--------~l~~~~~d~~i~iwd~~~~~~-----~~~~~~~~~~h~~~v~~~~~~ 155 (377)
T 3dwl_C 97 L--------RLNRAATFVRWSPNED--------KFAVGSGARVISVCYFEQEND-----WWVSKHLKRPLRSTILSLDWH 155 (377)
T ss_dssp C--------CCSSCEEEEECCTTSS--------CCEEEESSSCEEECCC----------CCCCEEECSSCCSCEEEEEEC
T ss_pred c--------ccCCceEEEEECCCCC--------EEEEEecCCeEEEEEECCccc-----ceeeeEeecccCCCeEEEEEc
Confidence 2 3557888888877655 899999999999999875431 112344443367899999999
Q ss_pred CCCCEEEEeeCCCeEEEEECCCCc------------------eeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEE
Q 019405 172 ISEKFSLFGGKGVEVNVWDLDKCE------------------KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG 233 (341)
Q Consensus 172 ~~~~~l~~~~~d~~v~i~d~~~~~------------------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 233 (341)
|++++|++++.|+.|++||+++.+ .+..+ .|...|.+++| +|++++|+++
T Consensus 156 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~v~~~~~--sp~~~~l~~~ 223 (377)
T 3dwl_C 156 PNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY----------PSGGWVHAVGF--SPSGNALAYA 223 (377)
T ss_dssp TTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC----------CCSSSEEEEEE--CTTSSCEEEE
T ss_pred CCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc----------cCCceEEEEEE--CCCCCEEEEE
Confidence 999999999999999999996432 22222 34577999999 8999999999
Q ss_pred eCCCeEEEEEcCCCCce---eEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCe--E----------------
Q 019405 234 TNDHQVRLYDTSAQRRP---VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK--L---------------- 292 (341)
Q Consensus 234 ~~d~~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~--~---------------- 292 (341)
+.|+.|++||+++++.+ +..+..|..+|.+++|+|++++|++|+.++.+ +|+..... .
T Consensus 224 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (377)
T 3dwl_C 224 GHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHT 302 (377)
T ss_dssp ETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSS
T ss_pred eCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccc
Confidence 99999999999987642 66788899999999999999999988766555 66654211 0
Q ss_pred ------------E------eEEe----------------ccccCceeEEEecCCC-C---EEEEEeCCCcEEEEEc
Q 019405 293 ------------L------GCFI----------------GKCSGSIRSIARHPTL-P---IIASCGLDSYLRFWDI 330 (341)
Q Consensus 293 ------------~------~~~~----------------~~~~~~i~~~~~~~~~-~---~l~s~~~dg~v~iwd~ 330 (341)
. ..+. .| .+.|+++++.+.. . .|+|++.||.|++||+
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H-~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 303 GNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVH-QNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp SSBCCCCCC-------------------------CCCSSSC-SSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccccccccccccccccccchhhccccccccccCccc-cceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0 1111 15 8899999976644 3 6999999999999985
No 70
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.3e-34 Score=266.47 Aligned_cols=259 Identities=12% Similarity=0.184 Sum_probs=210.3
Q ss_pred eeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcc-----hheeeccCCCCCCCCCCceeeEeeeecc
Q 019405 41 VVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL-----RVAISNAGDSGAQPEDDGIVGLHLFKRQ 115 (341)
Q Consensus 41 ~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (341)
....+.+|...|++++++++.. ++|++|+.|++|+||++.+... ...+.. |...+.++.+.+..
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~~~---~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~--------h~~~v~~v~~s~~g 442 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPIDNA---DIIVSASRDKSIILWKLTKDDKAYGVAQRRLTG--------HSHFVEDVVLSSDG 442 (694)
T ss_dssp EEEEEECCSSCEEEEECCTTCC---SEEEEEETTSEEEEEECCCSTTCSCEEEEEEEC--------CSSCEEEEEECTTS
T ss_pred hhhhcccCCceeEEEEecCCCC---CEEEEEeCCCcEEEEEccCCCcccccccceecC--------CCCcEEEEEECCCC
Confidence 3345778999999999887653 4899999999999999976432 223333 55778888887665
Q ss_pred ccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCc
Q 019405 116 REESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE 195 (341)
Q Consensus 116 ~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~ 195 (341)
. .+++++.||.+++|++.... .++.+. .|...|.+++|+|++++|++++.|++|++||.....
T Consensus 443 ~--------~l~sgs~Dg~v~vwd~~~~~--------~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~ 505 (694)
T 3dm0_A 443 Q--------FALSGSWDGELRLWDLAAGV--------STRRFV-GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGEC 505 (694)
T ss_dssp S--------EEEEEETTSEEEEEETTTTE--------EEEEEE-CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE
T ss_pred C--------EEEEEeCCCcEEEEECCCCc--------ceeEEe-CCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCc
Confidence 5 89999999999999986433 344443 477899999999999999999999999999986544
Q ss_pred eeeecCCCCCCccCccCCeeeeEEEEEecCCC--CEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceE
Q 019405 196 KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH--RKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNI 273 (341)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 273 (341)
........ ..|...|.+++| +|++ ..|++++.|++|++||+++.+. ...+.+|...|++++|+|++++|
T Consensus 506 ~~~~~~~~------~~h~~~v~~~~~--~~~~~~~~l~s~s~d~~v~vwd~~~~~~-~~~~~~h~~~v~~v~~spdg~~l 576 (694)
T 3dm0_A 506 KYTISEGG------EGHRDWVSCVRF--SPNTLQPTIVSASWDKTVKVWNLSNCKL-RSTLAGHTGYVSTVAVSPDGSLC 576 (694)
T ss_dssp EEEECSST------TSCSSCEEEEEE--CSCSSSCEEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEEEEECTTSSEE
T ss_pred ceeeccCC------CCCCCcEEEEEE--eCCCCcceEEEEeCCCeEEEEECCCCcE-EEEEcCCCCCEEEEEEeCCCCEE
Confidence 33222211 124577999999 6665 6899999999999999998664 78888999999999999999999
Q ss_pred EEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 274 YIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 274 ~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
++|+.|+.|++||+++++.+..+.. ...|.+++|+|++.+|++++ |+.|++||+++++++..+
T Consensus 577 ~sg~~Dg~i~iwd~~~~~~~~~~~~--~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~ 639 (694)
T 3dm0_A 577 ASGGKDGVVLLWDLAEGKKLYSLEA--NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDL 639 (694)
T ss_dssp EEEETTSBCEEEETTTTEEEECCBC--SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEE
T ss_pred EEEeCCCeEEEEECCCCceEEEecC--CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhh
Confidence 9999999999999999999888765 46899999999998887765 566999999999887654
No 71
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=7.8e-35 Score=264.37 Aligned_cols=279 Identities=14% Similarity=0.128 Sum_probs=206.7
Q ss_pred eeeeecCCCCeEEEEEecCccCccceeeeccCCCC---CceeEEEecc-CCCCCceEEEEccCCeEEEeeCCCCcchhee
Q 019405 16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHS---SNCVLAASID-DSQNDPLLAVARKNGLTDILNPLNGDLRVAI 91 (341)
Q Consensus 16 ~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~s~~-~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 91 (341)
.+++++.||.+++|++... +.+..+..|.. .+.+++|+++ +. +|++++.||.|++||+.+++.+..+
T Consensus 175 ~l~~~~~d~~v~vwd~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~----~l~~~~~dg~i~vwd~~~~~~~~~~ 245 (615)
T 1pgu_A 175 RSMTVGDDGSVVFYQGPPF-----KFSASDRTHHKQGSFVRDVEFSPDSGE----FVITVGSDRKISCFDGKSGEFLKYI 245 (615)
T ss_dssp EEEEEETTTEEEEEETTTB-----EEEEEECSSSCTTCCEEEEEECSTTCC----EEEEEETTCCEEEEETTTCCEEEEC
T ss_pred EEEEEeCCCcEEEEeCCCc-----ceeeeecccCCCCceEEEEEECCCCCC----EEEEEeCCCeEEEEECCCCCEeEEe
Confidence 5888999999999997765 66778888888 8999999887 55 8999999999999999998887777
Q ss_pred -eccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeeccc-------------------------
Q 019405 92 -SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV------------------------- 145 (341)
Q Consensus 92 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~------------------------- 145 (341)
... ..+...+.++.+. ... .+++++.|+.+++|++.....
T Consensus 246 ~~~~-----~~~~~~v~~~~~~-~~~--------~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (615)
T 1pgu_A 246 EDDQ-----EPVQGGIFALSWL-DSQ--------KFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR 311 (615)
T ss_dssp CBTT-----BCCCSCEEEEEES-SSS--------EEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTE
T ss_pred cccc-----cccCCceEEEEEc-CCC--------EEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCe
Confidence 300 0134566666665 333 667777777777776542210
Q ss_pred -ccccCCceEEEEEee-------------------------------------------cCCceEEEEecCCCCEEEEee
Q 019405 146 -SAESSCSTVKSWNVC-------------------------------------------ASGTIAFSKVDISEKFSLFGG 181 (341)
Q Consensus 146 -~~~~~~~~v~~~~~~-------------------------------------------~~~~i~~~~~~~~~~~l~~~~ 181 (341)
..+..++.+++|+.. +...|.++++ ++++.+++++
T Consensus 312 l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~ 390 (615)
T 1pgu_A 312 IISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSIS 390 (615)
T ss_dssp EEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEE
T ss_pred EEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEe
Confidence 112234444444422 2223334444 2244444444
Q ss_pred CCCeEEE-------------------------------------------------------------------------
Q 019405 182 KGVEVNV------------------------------------------------------------------------- 188 (341)
Q Consensus 182 ~d~~v~i------------------------------------------------------------------------- 188 (341)
.|+.|++
T Consensus 391 ~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~ 470 (615)
T 1pgu_A 391 WDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQ 470 (615)
T ss_dssp TTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEE
T ss_pred CCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEE
Confidence 4444444
Q ss_pred -EECCCCcee-eecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEe-cCCCeEEEE
Q 019405 189 -WDLDKCEKI-WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF-RETPIKAVA 265 (341)
Q Consensus 189 -~d~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~v~~~~ 265 (341)
||+.+++.. ..+. .|...|.+++| +|++++|++++.|+.|++||+.+++. +..+.. |...|++++
T Consensus 471 ~~~~~~~~~~~~~~~---------~~~~~v~~~~~--s~~g~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~h~~~v~~~~ 538 (615)
T 1pgu_A 471 VFKLSDLEVSFDLKT---------PLRAKPSYISI--SPSETYIAAGDVMGKILLYDLQSREV-KTSRWAFRTSKINAIS 538 (615)
T ss_dssp EEETTEEEEEEECSS---------CCSSCEEEEEE--CTTSSEEEEEETTSCEEEEETTTTEE-EECCSCCCSSCEEEEE
T ss_pred EEECCCccccccccC---------CccCceEEEEE--CCCCCEEEEcCCCCeEEEeeCCCCcc-eeEeecCCCCceeEEE
Confidence 444433222 1222 24577999999 89999999999999999999998764 667776 999999999
Q ss_pred EcC----------CCceEEEEeCCCCEEEEECCCC-eEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405 266 EEP----------DSFNIYIGNGSGDLASVDIRTG-KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (341)
Q Consensus 266 ~~~----------~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 332 (341)
|+| ++++|++++.||.|++||+.++ +++..+.+| ...|++++|+|+++ |++++.||.|++||+++
T Consensus 539 ~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h-~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 539 WKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH-KDGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp ECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSS-TTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred EcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcC-ccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 999 9999999999999999999998 788888888 89999999999999 99999999999999975
No 72
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-34 Score=243.52 Aligned_cols=269 Identities=14% Similarity=0.154 Sum_probs=221.9
Q ss_pred CccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccc
Q 019405 37 GVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQR 116 (341)
Q Consensus 37 g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (341)
|.......+.+|...|.+++|++++. +|++++.||.|++||+.+++.+..+.. +...+.++.+.+...
T Consensus 20 G~~~~~~~l~~h~~~v~~~~~s~~~~----~l~~~~~dg~i~vwd~~~~~~~~~~~~--------h~~~v~~~~~~~~~~ 87 (369)
T 3zwl_B 20 GSHMKAIKLTGHERPLTQVKYNKEGD----LLFSCSKDSSASVWYSLNGERLGTLDG--------HTGTIWSIDVDCFTK 87 (369)
T ss_dssp CCSEEEEEEECCSSCEEEEEECTTSC----EEEEEESSSCEEEEETTTCCEEEEECC--------CSSCEEEEEECTTSS
T ss_pred ccccccEEEEEeeceEEEEEEcCCCC----EEEEEeCCCEEEEEeCCCchhhhhhhh--------cCCcEEEEEEcCCCC
Confidence 44444457888999999999998766 899999999999999999988888775 457788888876555
Q ss_pred cccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCC-----CeEEEEEC
Q 019405 117 EESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKG-----VEVNVWDL 191 (341)
Q Consensus 117 ~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~v~i~d~ 191 (341)
.+++++.||.+.+|++.... .+..+. +...+.+++|+|+++++++++.+ +.|++||+
T Consensus 88 --------~l~s~~~dg~i~iwd~~~~~--------~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~ 149 (369)
T 3zwl_B 88 --------YCVTGSADYSIKLWDVSNGQ--------CVATWK--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEI 149 (369)
T ss_dssp --------EEEEEETTTEEEEEETTTCC--------EEEEEE--CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEE
T ss_pred --------EEEEEeCCCeEEEEECCCCc--------EEEEee--cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEe
Confidence 89999999999999986433 444444 67889999999999999999998 99999999
Q ss_pred CCCceeeecCCCCCCc--cCccCC--eeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEc
Q 019405 192 DKCEKIWTAKPPPKNS--LGIFTP--TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEE 267 (341)
Q Consensus 192 ~~~~~~~~~~~~~~~~--~~~~~~--~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 267 (341)
........+....... ....+. ..+.+++| +|++++|++++.|+.|++||+++...++..+..|...|.+++|+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 227 (369)
T 3zwl_B 150 ERDSATHELTKVSEEPIHKIITHEGLDAATVAGW--STKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFS 227 (369)
T ss_dssp EECTTTCCEEEECSSCSEEEECCTTCCCEEEEEE--CGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEEC
T ss_pred cCCccceeecccccceeeeccCCcCccceeEEEE--cCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEEC
Confidence 7654322211111000 000111 26999999 88999999999999999999998555688888999999999999
Q ss_pred CCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCC--------------cEEEEEcCCC
Q 019405 268 PDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDS--------------YLRFWDIKTR 333 (341)
Q Consensus 268 ~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg--------------~v~iwd~~~~ 333 (341)
|++.+|++++.|+.|++||+++++.+..+. + ...+..++|+|+++++++++.++ .+++||+.++
T Consensus 228 ~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~ 305 (369)
T 3zwl_B 228 PDLTYFITSSRDTNSFLVDVSTLQVLKKYE-T-DCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE 305 (369)
T ss_dssp TTSSEEEEEETTSEEEEEETTTCCEEEEEE-C-SSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTC
T ss_pred CCCCEEEEecCCceEEEEECCCCceeeeec-C-CCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC
Confidence 999999999999999999999999998887 3 68999999999999999999988 8999999999
Q ss_pred ceeeee
Q 019405 334 QLLSAV 339 (341)
Q Consensus 334 ~~~~~~ 339 (341)
+++..+
T Consensus 306 ~~~~~~ 311 (369)
T 3zwl_B 306 EEIGRV 311 (369)
T ss_dssp CEEEEE
T ss_pred cchhhe
Confidence 887765
No 73
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.7e-34 Score=267.02 Aligned_cols=292 Identities=12% Similarity=0.113 Sum_probs=219.0
Q ss_pred ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 94 (341)
..+++++.||.|++|+.... +....+ .|...|..++|++ +. +|++++.|++|+|||+.+++.+..+..
T Consensus 30 ~~lAsgs~Dg~I~lw~~~~~-----~~~~~~-~~~~~V~~l~fsp-g~----~L~S~s~D~~v~lWd~~~~~~~~~~~~- 97 (902)
T 2oaj_A 30 NLLAIATVTGEVHIYGQQQV-----EVVIKL-EDRSAIKEMRFVK-GI----YLVVINAKDTVYVLSLYSQKVLTTVFV- 97 (902)
T ss_dssp TEEEEEETTSEEEEECSTTC-----EEEEEC-SSCCCEEEEEEET-TT----EEEEEETTCEEEEEETTTCSEEEEEEC-
T ss_pred CEEEEEeCCCEEEEEeCCCc-----EEEEEc-CCCCCEEEEEEcC-CC----EEEEEECcCeEEEEECCCCcEEEEEcC-
Confidence 35778889999999986554 343344 4778999999998 43 899999999999999999888777652
Q ss_pred CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecc------------------------------
Q 019405 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK------------------------------ 144 (341)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~------------------------------ 144 (341)
...+.++.+.+... .+++++.||.+++|++....
T Consensus 98 --------~~~V~~v~~sp~g~--------~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp 161 (902)
T 2oaj_A 98 --------PGKITSIDTDASLD--------WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNP 161 (902)
T ss_dssp --------SSCEEEEECCTTCS--------EEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEET
T ss_pred --------CCCEEEEEECCCCC--------EEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEcc
Confidence 25677777766655 89999999999999874321
Q ss_pred -----cccccCCceEEEEEeec----------------------------CCceEEEEecCCCCEEEEeeCCCeEEEEEC
Q 019405 145 -----VSAESSCSTVKSWNVCA----------------------------SGTIAFSKVDISEKFSLFGGKGVEVNVWDL 191 (341)
Q Consensus 145 -----~~~~~~~~~v~~~~~~~----------------------------~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~ 191 (341)
.+.+..++.+ +|+... ...|.+++|+|++++|++++.|+.|++||+
T Consensus 162 ~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~ 240 (902)
T 2oaj_A 162 RDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDA 240 (902)
T ss_dssp TEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEET
T ss_pred CCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Confidence 1245677888 888643 245999999999999999999999999999
Q ss_pred CCCceeee--cC---CC-------------C-------------C---C--------------c---cC-----------
Q 019405 192 DKCEKIWT--AK---PP-------------P-------------K---N--------------S---LG----------- 209 (341)
Q Consensus 192 ~~~~~~~~--~~---~~-------------~-------------~---~--------------~---~~----------- 209 (341)
++++.+.. +. .+ . . . . +.
T Consensus 241 ~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s 320 (902)
T 2oaj_A 241 NSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITS 320 (902)
T ss_dssp TTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCC
T ss_pred CCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccc
Confidence 87665431 10 00 0 0 0 0 00
Q ss_pred ------------------cc-----------------------------------------------------------C
Q 019405 210 ------------------IF-----------------------------------------------------------T 212 (341)
Q Consensus 210 ------------------~~-----------------------------------------------------------~ 212 (341)
.. |
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~ 400 (902)
T 2oaj_A 321 YEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWL 400 (902)
T ss_dssp HHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTB
T ss_pred hhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCccccc
Confidence 00 0
Q ss_pred CeeeeEEEEEe--------------------------------cCCCCEEEEEeCCCeEEEEEcCCCCce---eEEEE--
Q 019405 213 PTWFTSAAFLS--------------------------------IDDHRKFVAGTNDHQVRLYDTSAQRRP---VMSFD-- 255 (341)
Q Consensus 213 ~~~v~~~~~~~--------------------------------~~~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~-- 255 (341)
...|++++|.+ +|++++|++|+.|++|++||+.++... .....
T Consensus 401 ~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~ 480 (902)
T 2oaj_A 401 RPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLS 480 (902)
T ss_dssp TTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHH
T ss_pred CCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeech
Confidence 01122222210 466789999999999999999876421 11221
Q ss_pred -----ecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCC----------------------------------------
Q 019405 256 -----FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG---------------------------------------- 290 (341)
Q Consensus 256 -----~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~---------------------------------------- 290 (341)
+|...|++++|+|++++||+|+.||+|+|||+.++
T Consensus 481 ~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (902)
T 2oaj_A 481 RTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTG 560 (902)
T ss_dssp HHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTT
T ss_pred hhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCC
Confidence 68889999999999999999999999999999765
Q ss_pred -----eEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceee
Q 019405 291 -----KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLS 337 (341)
Q Consensus 291 -----~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 337 (341)
+++..+.+| .+.|++++|+|+| +||+|+.|++|++||++++..+.
T Consensus 561 ~~~g~~~~~~l~~h-~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~ 610 (902)
T 2oaj_A 561 VRQGFMPSTAVHAN-KGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIY 610 (902)
T ss_dssp CSEEEEEEEEECCC-SCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEE
T ss_pred CCCccceeEEEEcC-CCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEE
Confidence 346778887 8999999999999 99999999999999998876653
No 74
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=7.9e-35 Score=254.42 Aligned_cols=273 Identities=13% Similarity=0.137 Sum_probs=202.9
Q ss_pred CCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCc-----------chheeeccCCC----CCCCCCCceeeEeee
Q 019405 48 PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD-----------LRVAISNAGDS----GAQPEDDGIVGLHLF 112 (341)
Q Consensus 48 ~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~-----------~~~~~~~~~~~----~~~~~~~~~~~~~~~ 112 (341)
+...|.+++|++++. +||+|+.||.|+||++.+++ ....+..|... ......+.+.++.|.
T Consensus 27 ~~~~V~~v~~s~~g~----~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~ 102 (447)
T 3dw8_B 27 EADIISTVEFNHSGE----LLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL 102 (447)
T ss_dssp GGGSEEEEEECSSSS----EEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEEC
T ss_pred ccCcEEEEEECCCCC----EEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEc
Confidence 678899999998665 99999999999999998776 34455543100 000001668888887
Q ss_pred eccccccccccceeEEEcccceeEEEEeeecccccc-----cC--------------------------CceEEEEEeec
Q 019405 113 KRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAE-----SS--------------------------CSTVKSWNVCA 161 (341)
Q Consensus 113 ~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~-----~~--------------------------~~~v~~~~~~~ 161 (341)
+.... ..+++++.|+.+++|++........ .. ....+.+...|
T Consensus 103 ~~~~~------~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 176 (447)
T 3dw8_B 103 PQKNA------AQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAH 176 (447)
T ss_dssp CCCSS------SEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCC
T ss_pred CCCCc------ceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCC
Confidence 76521 1899999999999999976432100 00 01122333457
Q ss_pred CCceEEEEecCCCCEEEEeeCCCeEEEEECCCC-ceeeecCCCCCCccCccCCeeeeEEEEEecCCC-CEEEEEeCCCeE
Q 019405 162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC-EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH-RKFVAGTNDHQV 239 (341)
Q Consensus 162 ~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~d~~i 239 (341)
...|.+++|+|++++|++| .|+.|++||+++. +....+..... ....|...|.+++| +|++ ++|++++.|+.|
T Consensus 177 ~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~--~p~~~~~l~s~~~dg~i 251 (447)
T 3dw8_B 177 TYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPA--NMEELTEVITAAEF--HPNSCNTFVYSSSKGTI 251 (447)
T ss_dssp SSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCS--SGGGCCCCEEEEEE--CSSCTTEEEEEETTSCE
T ss_pred CcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccc--cccccCcceEEEEE--CCCCCcEEEEEeCCCeE
Confidence 7889999999999999998 7999999999843 33332211100 01124577999999 8888 999999999999
Q ss_pred EEEEcCCCCc---eeEEEEecCC------------CeEEEEEcCCCceEEEEeCCCCEEEEECCC-CeEEeEEeccccCc
Q 019405 240 RLYDTSAQRR---PVMSFDFRET------------PIKAVAEEPDSFNIYIGNGSGDLASVDIRT-GKLLGCFIGKCSGS 303 (341)
Q Consensus 240 ~iwd~~~~~~---~~~~~~~~~~------------~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~ 303 (341)
++||+++++. .+..+..|.. .|.+++|+|++++|++++. +.|++||+++ ++++..+.+| ...
T Consensus 252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~-~~~ 329 (447)
T 3dw8_B 252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVH-EYL 329 (447)
T ss_dssp EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESC-GGG
T ss_pred EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecc-ccc
Confidence 9999998653 1577777775 8999999999999999999 9999999997 8888888887 432
Q ss_pred ---------------eeEEEecCCCCEEEEEeCCCcEEEEEcCCCceee
Q 019405 304 ---------------IRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLS 337 (341)
Q Consensus 304 ---------------i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 337 (341)
+..++|+|++++|++++.||.|++||+.+++.+.
T Consensus 330 ~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~ 378 (447)
T 3dw8_B 330 RSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT 378 (447)
T ss_dssp TTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE
T ss_pred cccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee
Confidence 3349999999999999999999999999988753
No 75
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.8e-34 Score=280.24 Aligned_cols=288 Identities=15% Similarity=0.254 Sum_probs=227.2
Q ss_pred ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 94 (341)
-.+++++.||.|++|++.+. +.+..+.+|...|.+++|++++. +|++++.||+|+|||+.+++.+..+..|
T Consensus 628 ~~l~s~~~d~~i~vw~~~~~-----~~~~~~~~h~~~v~~~~~s~~~~----~l~s~~~d~~v~vwd~~~~~~~~~~~~~ 698 (1249)
T 3sfz_A 628 QRIASCGADKTLQVFKAETG-----EKLLDIKAHEDEVLCCAFSSDDS----YIATCSADKKVKIWDSATGKLVHTYDEH 698 (1249)
T ss_dssp SEEEEEETTSCEEEEETTTC-----CEEEEECCCSSCEEEEEECTTSS----EEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred CEEEEEeCCCeEEEEECCCC-----CEEEEeccCCCCEEEEEEecCCC----EEEEEeCCCeEEEEECCCCceEEEEcCC
Confidence 35678889999999999876 56778889999999999998766 8999999999999999999988888764
Q ss_pred CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeeccc-----------------------ccccCC
Q 019405 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV-----------------------SAESSC 151 (341)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~-----------------------~~~~~~ 151 (341)
...+.++.+.+.... ..+++++.|+.+.+|++..... ++++.+
T Consensus 699 --------~~~v~~~~~~~~~~~------~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~d 764 (1249)
T 3sfz_A 699 --------SEQVNCCHFTNKSNH------LLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSAD 764 (1249)
T ss_dssp --------SSCEEEEEECSSSSC------CEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESS
T ss_pred --------CCcEEEEEEecCCCc------eEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECC
Confidence 355666655543221 1555666666666666433211 133455
Q ss_pred ceEEEEEee-----------------------------------------------------------------cCCceE
Q 019405 152 STVKSWNVC-----------------------------------------------------------------ASGTIA 166 (341)
Q Consensus 152 ~~v~~~~~~-----------------------------------------------------------------~~~~i~ 166 (341)
+.+++|+.. +...+.
T Consensus 765 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~ 844 (1249)
T 3sfz_A 765 GTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQ 844 (1249)
T ss_dssp SEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCC
T ss_pred CeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceE
Confidence 555555532 234577
Q ss_pred EEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCC
Q 019405 167 FSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA 246 (341)
Q Consensus 167 ~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 246 (341)
+++|+|+++++++++.|+.|++||+.++.....+..+. ..|.+++| +|++++|++++.|+.|++||+..
T Consensus 845 ~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~---------~~v~~v~~--spdg~~l~s~s~dg~v~vw~~~~ 913 (1249)
T 3sfz_A 845 YCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHL---------SWVHGVMF--SPDGSSFLTASDDQTIRVWETKK 913 (1249)
T ss_dssp EEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCS---------SCEEEEEE--CTTSSEEEEEETTSCEEEEEHHH
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCc---------cceEEEEE--CCCCCEEEEEeCCCeEEEEEccc
Confidence 88899999999999999999999999988888877654 66999999 89999999999999999999753
Q ss_pred CCc----------------------------eeEE--------EEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCC
Q 019405 247 QRR----------------------------PVMS--------FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG 290 (341)
Q Consensus 247 ~~~----------------------------~~~~--------~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~ 290 (341)
... .+.. ...+...+.+++|+|+++++++|+.+|.|++||+.++
T Consensus 914 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~ 993 (1249)
T 3sfz_A 914 VCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN 993 (1249)
T ss_dssp HHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTT
T ss_pred cceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCC
Confidence 100 0000 1123467999999999999999999999999999999
Q ss_pred eEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceee
Q 019405 291 KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLS 337 (341)
Q Consensus 291 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 337 (341)
+.+..+.+| ...|++++|+|++++|++++.||.|++||+.+++.+.
T Consensus 994 ~~~~~~~~h-~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~ 1039 (1249)
T 3sfz_A 994 RVFSSGVGH-KKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF 1039 (1249)
T ss_dssp SCEEECCCC-SSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC
T ss_pred ceeeecccC-CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE
Confidence 999999988 8999999999999999999999999999999887653
No 76
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=4.7e-34 Score=243.47 Aligned_cols=246 Identities=10% Similarity=0.085 Sum_probs=206.6
Q ss_pred cCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCc--chheeeccCCCCCCCCCCceeeEeeeecccccccccc
Q 019405 46 GDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD--LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS 123 (341)
Q Consensus 46 ~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (341)
..|..++.+++|++++. +|++++.|+.|++||+.+++ .+..+.. +...+.++.+.+...
T Consensus 5 ~~~~~~i~~~~~s~~~~----~l~~~~~d~~v~i~~~~~~~~~~~~~~~~--------h~~~v~~~~~~~~~~------- 65 (372)
T 1k8k_C 5 SFLVEPISCHAWNKDRT----QIAICPNNHEVHIYEKSGNKWVQVHELKE--------HNGQVTGVDWAPDSN------- 65 (372)
T ss_dssp ESCSSCCCEEEECTTSS----EEEEECSSSEEEEEEEETTEEEEEEEEEC--------CSSCEEEEEEETTTT-------
T ss_pred cccCCCeEEEEECCCCC----EEEEEeCCCEEEEEeCCCCcEEeeeeecC--------CCCcccEEEEeCCCC-------
Confidence 34889999999997765 89999999999999998876 6666665 457788888877555
Q ss_pred ceeEEEcccceeEEEEeeecccccccCCceEEEEE-eecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCce---eee
Q 019405 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN-VCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK---IWT 199 (341)
Q Consensus 124 ~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~---~~~ 199 (341)
.+++++.||.+.+|++.... ...... ..+...|.+++|+|+++++++++.|+.|++||++.++. ...
T Consensus 66 -~l~~~~~dg~i~vwd~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~ 136 (372)
T 1k8k_C 66 -RIVTCGTDRNAYVWTLKGRT--------WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKH 136 (372)
T ss_dssp -EEEEEETTSCEEEEEEETTE--------EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEE
T ss_pred -EEEEEcCCCeEEEEECCCCe--------eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeee
Confidence 89999999999999986433 122221 34677899999999999999999999999999987663 222
Q ss_pred cCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcC------------------CCCceeEEEEecCCCe
Q 019405 200 AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS------------------AQRRPVMSFDFRETPI 261 (341)
Q Consensus 200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~------------------~~~~~~~~~~~~~~~v 261 (341)
+... |...|.+++| +|++++|++++.|+.|++||++ .+ .++..+..|...|
T Consensus 137 ~~~~--------~~~~i~~~~~--~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v 205 (372)
T 1k8k_C 137 IKKP--------IRSTVLSLDW--HPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFG-ELMFESSSSCGWV 205 (372)
T ss_dssp ECTT--------CCSCEEEEEE--CTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTT-CEEEECCCCSSCE
T ss_pred eecc--------cCCCeeEEEE--cCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchh-hheEecCCCCCeE
Confidence 2211 3366999999 8899999999999999999964 33 3477777899999
Q ss_pred EEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405 262 KAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (341)
Q Consensus 262 ~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 332 (341)
.+++|+|++.+|++++.|+.|++||+++++++..+..| ..+|.+++|+|++.+|+++ .|+.|++|++.+
T Consensus 206 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 206 HGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASE-TLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp EEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECS-SCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccC-CCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 99999999999999999999999999999999999988 8899999999999988877 999999999987
No 77
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=5.4e-34 Score=267.05 Aligned_cols=257 Identities=15% Similarity=0.204 Sum_probs=221.5
Q ss_pred eeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccc
Q 019405 41 VVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS 120 (341)
Q Consensus 41 ~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (341)
+...+.+|...+.+++|++++. +|++++.||.|+|||+.+++.+..+.. +..++.++.|.+...
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~~~----~la~~~~~g~v~iwd~~~~~~~~~~~~--------~~~~v~~~~~s~~~~---- 68 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPTEP----WVLTTLYSGRVEIWNYETQVEVRSIQV--------TETPVRAGKFIARKN---- 68 (814)
T ss_dssp CEEEEEEECSCEEEEEECSSSS----EEEEEETTSEEEEEETTTTEEEEEEEC--------CSSCEEEEEEEGGGT----
T ss_pred cceeeecCCCceEEEEECCCCC----EEEEEeCCCEEEEEECCCCceEEEEec--------CCCcEEEEEEeCCCC----
Confidence 4456788999999999988766 899999999999999999988888776 457788888887766
Q ss_pred cccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCC-ceeee
Q 019405 121 SRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC-EKIWT 199 (341)
Q Consensus 121 ~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~-~~~~~ 199 (341)
.+++++.||.+.+|++.... .+..+. .+...|.+++|+|++++|++++.||.|++||++++ .....
T Consensus 69 ----~l~~~~~dg~i~vw~~~~~~--------~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 135 (814)
T 3mkq_A 69 ----WIIVGSDDFRIRVFNYNTGE--------KVVDFE-AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT 135 (814)
T ss_dssp ----EEEEEETTSEEEEEETTTCC--------EEEEEE-CCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEE
T ss_pred ----EEEEEeCCCeEEEEECCCCc--------EEEEEe-cCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEE
Confidence 89999999999999986433 444443 36788999999999999999999999999999876 45555
Q ss_pred cCCCCCCccCccCCeeeeEEEEEecC-CCCEEEEEeCCCeEEEEEcCCCCceeEEEEec-CCCeEEEEEcC--CCceEEE
Q 019405 200 AKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR-ETPIKAVAEEP--DSFNIYI 275 (341)
Q Consensus 200 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~--~~~~l~~ 275 (341)
+..+. ..|.+++| +| ++..|++++.|+.|++||+.++.. ...+..+ ...+.+++|+| ++.+|++
T Consensus 136 ~~~~~---------~~v~~~~~--~p~~~~~l~~~~~dg~v~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 203 (814)
T 3mkq_A 136 FEGHE---------HFVMCVAF--NPKDPSTFASGCLDRTVKVWSLGQSTP-NFTLTTGQERGVNYVDYYPLPDKPYMIT 203 (814)
T ss_dssp EECCS---------SCEEEEEE--ETTEEEEEEEEETTSEEEEEETTCSSC-SEEEECCCTTCCCEEEECCSTTCCEEEE
T ss_pred EcCCC---------CcEEEEEE--EcCCCCEEEEEeCCCeEEEEECCCCcc-eeEEecCCCCCEEEEEEEECCCCCEEEE
Confidence 55443 56999999 77 788999999999999999988665 5555544 48899999999 9999999
Q ss_pred EeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 276 GNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 276 g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
++.||.|++||+++++.+..+.+| ...|.+++|+|++++|++++.||.|++||+.+++.+..+
T Consensus 204 ~~~dg~i~~~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~ 266 (814)
T 3mkq_A 204 ASDDLTIKIWDYQTKSCVATLEGH-MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266 (814)
T ss_dssp ECTTSEEEEEETTTTEEEEEEECC-SSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEE
T ss_pred EeCCCEEEEEECCCCcEEEEEcCC-CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence 999999999999999999999988 899999999999999999999999999999998887664
No 78
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-34 Score=267.50 Aligned_cols=308 Identities=8% Similarity=0.004 Sum_probs=215.3
Q ss_pred ceeeeecCCCCeEEEEEecCccCccceeeeccCC------------------CCCceeEEEeccCCCCCceEEEEccCCe
Q 019405 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDP------------------HSSNCVLAASIDDSQNDPLLAVARKNGL 76 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~------------------~~~~~~~~~s~~~~~~~~~l~~~~~dg~ 76 (341)
..+++++.||.+ +|++... +....+..| ...+.+++|++++. +|++|+.||+
T Consensus 165 ~~l~~g~~dg~v-lWd~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~----~lasgs~Dg~ 234 (902)
T 2oaj_A 165 GTVLISYEYVTL-TYSLVEN-----EIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSL----HIITIHEDNS 234 (902)
T ss_dssp EEEEEECSSCEE-EEETTTT-----EEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSS----EEEEEETTCC
T ss_pred CEEEEEeCCCcE-EEECCCC-----ceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCC----EEEEEECCCe
Confidence 357788999999 9998875 444444433 56789999987755 8999999999
Q ss_pred EEEeeCCCCcchhe--ee---ccCCCCCC-----CCCCceeeEeeeeccccccccccceeEEEccc-----ceeEEEEee
Q 019405 77 TDILNPLNGDLRVA--IS---NAGDSGAQ-----PEDDGIVGLHLFKRQREESSSRSRTLLTCTTK-----GKASMRSIE 141 (341)
Q Consensus 77 i~iw~~~~~~~~~~--~~---~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----g~~~i~~~~ 141 (341)
|++||+.+++++.. +. .+.+.... .+...+.++.|.+....+ ....+++++.+ +.+.+|++.
T Consensus 235 i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd---~~~ll~sg~~~~~~~~~~v~~~~~~ 311 (902)
T 2oaj_A 235 LVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPE---YTSLLISHKSISRGDNQSLTMIDLG 311 (902)
T ss_dssp EEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTT---EEEEEEEEECSTTSSCCCEEEEEEE
T ss_pred EEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCC---CCEEEEeCCCCCCCCCceEEEEecC
Confidence 99999998876543 21 12110000 123467777775421100 00145555444 256666632
Q ss_pred ec------------------------------------------c----------cccccCCceEEEEEeecC-------
Q 019405 142 VT------------------------------------------K----------VSAESSCSTVKSWNVCAS------- 162 (341)
Q Consensus 142 ~~------------------------------------------~----------~~~~~~~~~v~~~~~~~~------- 162 (341)
.. + ......++.+++|+...+
T Consensus 312 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~ 391 (902)
T 2oaj_A 312 YTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKAS 391 (902)
T ss_dssp ECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGG
T ss_pred CCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccc
Confidence 00 0 011223567888875321
Q ss_pred ----------CceEE----------------------------------EEecCCCCEEEEeeCCCeEEEEECCCCceee
Q 019405 163 ----------GTIAF----------------------------------SKVDISEKFSLFGGKGVEVNVWDLDKCEKIW 198 (341)
Q Consensus 163 ----------~~i~~----------------------------------~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~ 198 (341)
..|.+ ++|+|++++|++|+.|++|++||+.++....
T Consensus 392 ~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~ 471 (902)
T 2oaj_A 392 LFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQD 471 (902)
T ss_dssp GSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTT
T ss_pred cCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccC
Confidence 22333 3456889999999999999999998874210
Q ss_pred --ecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCC----------------------------
Q 019405 199 --TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR---------------------------- 248 (341)
Q Consensus 199 --~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---------------------------- 248 (341)
.+...........|...|.+++| +|++++||+|+.||+|++||+.+++
T Consensus 472 ~~~~~~~l~~~~~~~h~~~V~svaf--spdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (902)
T 2oaj_A 472 NASFEVNLSRTLNKAKELAVDKISF--AAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGV 549 (902)
T ss_dssp TBCEEEEHHHHTTCSSSCCEEEEEE--ETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCS
T ss_pred CceEEeechhhcCCCCCCceeEEEe--cCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccc
Confidence 00000000001135578999999 8999999999999999999997652
Q ss_pred ----------------ceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeE-----Ee-ccccCceeE
Q 019405 249 ----------------RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGC-----FI-GKCSGSIRS 306 (341)
Q Consensus 249 ----------------~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~-----~~-~~~~~~i~~ 306 (341)
+++..+.+|..+|++++|+|+| +||+|+.|++|++||++++..+.. +. +| .+.|++
T Consensus 550 ~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh-~~~V~s 627 (902)
T 2oaj_A 550 LVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQ-SACVTC 627 (902)
T ss_dssp EEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSC-CCCEEE
T ss_pred cccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhcccc-ccceEE
Confidence 2366778899999999999999 999999999999999998877642 22 66 889999
Q ss_pred EEec-----CCC---CEEEEEeCCCcEEEEEc---CCCceeeee
Q 019405 307 IARH-----PTL---PIIASCGLDSYLRFWDI---KTRQLLSAV 339 (341)
Q Consensus 307 ~~~~-----~~~---~~l~s~~~dg~v~iwd~---~~~~~~~~~ 339 (341)
++|+ ||| ++|++++.|++|++||+ .+|+++.++
T Consensus 628 v~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~ 671 (902)
T 2oaj_A 628 IEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQL 671 (902)
T ss_dssp EEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEE
T ss_pred EEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEe
Confidence 9999 886 79999999999999999 788877654
No 79
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-33 Score=234.16 Aligned_cols=253 Identities=15% Similarity=0.216 Sum_probs=211.8
Q ss_pred ceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccc
Q 019405 40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES 119 (341)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (341)
++...+.+|...|.+++| +++. +|++|+.||.|++||+.+++....+.. +...+.++.+.+...
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~~~~----~l~s~~~dg~v~vw~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~--- 72 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-VDDS----KVASVSRDGTVRLWSKDDQWLGTVVYT--------GQGFLNSVCYDSEKE--- 72 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-EETT----EEEEEETTSEEEEEEESSSEEEEEEEE--------CSSCEEEEEEETTTT---
T ss_pred HHHHHhhCCCCCcEEEEe-cCCC----EEEEEEcCCcEEEEECCCCEEEEEeec--------CCccEEEEEECCCCC---
Confidence 566788999999999998 6655 899999999999999988887777766 347788888877665
Q ss_pred ccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeee
Q 019405 120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT 199 (341)
Q Consensus 120 ~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~ 199 (341)
.+++++.||.+.+|++..... ...+..+. .+...|.++.+ +++++++++.|+.|++|| .++....
T Consensus 73 -----~l~~~~~dg~i~~~~~~~~~~-----~~~~~~~~-~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~ 137 (313)
T 3odt_A 73 -----LLLFGGKDTMINGVPLFATSG-----EDPLYTLI-GHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYN 137 (313)
T ss_dssp -----EEEEEETTSCEEEEETTCCTT-----SCC-CEEC-CCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEE
T ss_pred -----EEEEecCCCeEEEEEeeecCC-----CCcccchh-hcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEe
Confidence 999999999999999865431 12333333 46778999999 578999999999999999 5566666
Q ss_pred cCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEe-cCCCeEEEEEcCCCceEEEEeC
Q 019405 200 AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF-RETPIKAVAEEPDSFNIYIGNG 278 (341)
Q Consensus 200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~g~~ 278 (341)
+..+. ..+.++.|. +++++++++++.|+.|++||.. .....+.. |...+.+++|+|++. +++++.
T Consensus 138 ~~~~~---------~~v~~~~~~-~~~~~~l~~~~~d~~i~i~d~~---~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~ 203 (313)
T 3odt_A 138 LQAHN---------ASVWDAKVV-SFSENKFLTASADKTIKLWQND---KVIKTFSGIHNDVVRHLAVVDDGH-FISCSN 203 (313)
T ss_dssp EECCS---------SCEEEEEEE-ETTTTEEEEEETTSCEEEEETT---EEEEEECSSCSSCEEEEEEEETTE-EEEEET
T ss_pred cccCC---------CceeEEEEc-cCCCCEEEEEECCCCEEEEecC---ceEEEEeccCcccEEEEEEcCCCe-EEEccC
Confidence 65543 558999995 3488999999999999999933 24666766 889999999999998 999999
Q ss_pred CCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 279 SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 279 dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
|+.|++||+++++.+..+..| ...|++++|+|++ .|++++.||.|++||+++++++..+
T Consensus 204 dg~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~ 262 (313)
T 3odt_A 204 DGLIKLVDMHTGDVLRTYEGH-ESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVI 262 (313)
T ss_dssp TSEEEEEETTTCCEEEEEECC-SSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEE
T ss_pred CCeEEEEECCchhhhhhhhcC-CceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEE
Confidence 999999999999999999988 8999999999999 6899999999999999999887765
No 80
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.5e-33 Score=244.94 Aligned_cols=261 Identities=11% Similarity=0.160 Sum_probs=220.9
Q ss_pred ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 94 (341)
-.+++++.||.|++|++... +.+..+..|...+.+++++ +++|++|+.||+|++||+.+++.+..+..
T Consensus 170 ~~l~s~~~dg~i~vwd~~~~-----~~~~~~~~h~~~v~~~~~~------~~~l~s~s~dg~i~~wd~~~~~~~~~~~~- 237 (445)
T 2ovr_B 170 NIIISGSTDRTLKVWNAETG-----ECIHTLYGHTSTVRCMHLH------EKRVVSGSRDATLRVWDIETGQCLHVLMG- 237 (445)
T ss_dssp TEEEEEETTSCEEEEETTTT-----EEEEEECCCSSCEEEEEEE------TTEEEEEETTSEEEEEESSSCCEEEEEEC-
T ss_pred CEEEEEeCCCeEEEEECCcC-----cEEEEECCCCCcEEEEEec------CCEEEEEeCCCEEEEEECCCCcEEEEEcC-
Confidence 36889999999999999876 6677888899999988874 23799999999999999999988887776
Q ss_pred CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC
Q 019405 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (341)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~ 174 (341)
+...+.++.+ ... .+++++.||.+.+|++.... .+..+. .+...|.++.+ ++
T Consensus 238 -------~~~~v~~~~~--~~~--------~l~~~~~dg~i~iwd~~~~~--------~~~~~~-~~~~~v~~~~~--~~ 289 (445)
T 2ovr_B 238 -------HVAAVRCVQY--DGR--------RVVSGAYDFMVKVWDPETET--------CLHTLQ-GHTNRVYSLQF--DG 289 (445)
T ss_dssp -------CSSCEEEEEE--CSS--------CEEEEETTSCEEEEEGGGTE--------EEEEEC-CCSSCEEEEEE--CS
T ss_pred -------CcccEEEEEE--CCC--------EEEEEcCCCEEEEEECCCCc--------EeEEec-CCCCceEEEEE--CC
Confidence 4467777776 223 89999999999999986443 344444 35678999998 78
Q ss_pred CEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEE
Q 019405 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF 254 (341)
Q Consensus 175 ~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 254 (341)
+++++++.|+.|++||+++++.+..+..+. ..+.++.+ +++++++++.||.|++||+++++. +..+
T Consensus 290 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---------~~v~~~~~----~~~~l~~~~~dg~i~vwd~~~~~~-~~~~ 355 (445)
T 2ovr_B 290 IHVVSGSLDTSIRVWDVETGNCIHTLTGHQ---------SLTSGMEL----KDNILVSGNADSTVKIWDIKTGQC-LQTL 355 (445)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEEEECCCC---------SCEEEEEE----ETTEEEEEETTSCEEEEETTTCCE-EEEE
T ss_pred CEEEEEeCCCeEEEEECCCCCEEEEEcCCc---------ccEEEEEE----eCCEEEEEeCCCeEEEEECCCCcE-EEEE
Confidence 999999999999999999999988887654 44777777 567999999999999999998764 7777
Q ss_pred Ee---cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEe-----ccccCceeEEEecCCCCEEEEEeCCCc--
Q 019405 255 DF---RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI-----GKCSGSIRSIARHPTLPIIASCGLDSY-- 324 (341)
Q Consensus 255 ~~---~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~s~~~dg~-- 324 (341)
.. |..+|.+++|+ +.+|++|+.||.|++||+.+++.+..+. .+ .+.|++++|+|++.++++++.||.
T Consensus 356 ~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~la~~~~dg~~~ 432 (445)
T 2ovr_B 356 QGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGS-GGVVWRIRASNTKLVCAVGSRNGTEE 432 (445)
T ss_dssp CSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGG-TCEEEEEEECSSEEEEEEECSSSSSC
T ss_pred ccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCC-CceEEEEEecCCEEEEEEcccCCCCc
Confidence 76 78899999996 5699999999999999999999988883 44 789999999999999999999998
Q ss_pred --EEEEEcCC
Q 019405 325 --LRFWDIKT 332 (341)
Q Consensus 325 --v~iwd~~~ 332 (341)
|.+||+..
T Consensus 433 ~~l~v~df~~ 442 (445)
T 2ovr_B 433 TKLLVLDFDV 442 (445)
T ss_dssp CEEEEEECCC
T ss_pred cEEEEEECCC
Confidence 99999975
No 81
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=9.2e-35 Score=283.69 Aligned_cols=297 Identities=13% Similarity=0.126 Sum_probs=229.0
Q ss_pred CCceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheee
Q 019405 13 PPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS 92 (341)
Q Consensus 13 ~~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 92 (341)
....+++++.||.+++|++... +....+.+|...+.+++|++++. +|++++.||.|++||+.+++....+.
T Consensus 712 ~~~~l~sg~~d~~v~vwd~~~~-----~~~~~~~~h~~~v~~~~~sp~~~----~l~s~s~dg~v~vwd~~~~~~~~~~~ 782 (1249)
T 3sfz_A 712 NHLLLATGSNDFFLKLWDLNQK-----ECRNTMFGHTNSVNHCRFSPDDE----LLASCSADGTLRLWDVRSANERKSIN 782 (1249)
T ss_dssp SCCEEEEEETTSCEEEEETTSS-----SEEEEECCCSSCEEEEEECSSTT----EEEEEESSSEEEEEEGGGTEEEEEEE
T ss_pred CceEEEEEeCCCeEEEEECCCc-----chhheecCCCCCEEEEEEecCCC----EEEEEECCCeEEEEeCCCCcccceec
Confidence 4456788999999999999876 56677888999999999988666 89999999999999998876655443
Q ss_pred ccC-----------------CCCCC------------------------------CCCCceeeEeeeeccccccccccce
Q 019405 93 NAG-----------------DSGAQ------------------------------PEDDGIVGLHLFKRQREESSSRSRT 125 (341)
Q Consensus 93 ~~~-----------------~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (341)
... ...++ .+...+.++.+.+... .
T Consensus 783 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~--------~ 854 (1249)
T 3sfz_A 783 VKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDH--------L 854 (1249)
T ss_dssp CCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTT--------E
T ss_pred ccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCC--------E
Confidence 211 11111 2233444444444433 8
Q ss_pred eEEEcccceeEEEEeeeccc-----------------------ccccCCceEEEEEeec---------------------
Q 019405 126 LLTCTTKGKASMRSIEVTKV-----------------------SAESSCSTVKSWNVCA--------------------- 161 (341)
Q Consensus 126 l~~~~~~g~~~i~~~~~~~~-----------------------~~~~~~~~v~~~~~~~--------------------- 161 (341)
+++++.+|.+.+|++..... .+++.++.+++|+...
T Consensus 855 l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1249)
T 3sfz_A 855 AVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENE 934 (1249)
T ss_dssp EEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTE
T ss_pred EEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCC
Confidence 88899999999998653321 2456788888887532
Q ss_pred --------------------------CCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCee
Q 019405 162 --------------------------SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTW 215 (341)
Q Consensus 162 --------------------------~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (341)
...+.+++++|+++++++|+.+|.|++||+.+++....+..+. ..
T Consensus 935 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~---------~~ 1005 (1249)
T 3sfz_A 935 TMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHK---------KA 1005 (1249)
T ss_dssp EEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCS---------SC
T ss_pred cEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCC---------Cc
Confidence 2458899999999999999999999999999887777666543 34
Q ss_pred eeEEEEEecCCCCEEEEEeCCCeEEEEEc----------------------------------------CCCCceeEEEE
Q 019405 216 FTSAAFLSIDDHRKFVAGTNDHQVRLYDT----------------------------------------SAQRRPVMSFD 255 (341)
Q Consensus 216 v~~~~~~~~~~~~~l~~~~~d~~i~iwd~----------------------------------------~~~~~~~~~~~ 255 (341)
|.+++| +|++++|++++.|+.|++||+ .+++ .+..+.
T Consensus 1006 v~~l~~--s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~-~~~~~~ 1082 (1249)
T 3sfz_A 1006 VRHIQF--TADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGR-IERDFT 1082 (1249)
T ss_dssp CCCEEE--CSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTC-CCEEEE
T ss_pred eEEEEE--CCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCc-eeEEEc
Confidence 555666 555555555555555555554 4433 255677
Q ss_pred ecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCce
Q 019405 256 FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL 335 (341)
Q Consensus 256 ~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 335 (341)
.|...|.+++|+|++++|++++.|+.|++||+.+++++..+.+| ...|++++|+|++++|++++.||.|++||+.++++
T Consensus 1083 ~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h-~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~ 1161 (1249)
T 3sfz_A 1083 CHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGH-NGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQL 1161 (1249)
T ss_dssp CCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCC-SSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCC
T ss_pred ccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccC-CCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCce
Confidence 78889999999999999999999999999999999999999998 89999999999999999999999999999999987
Q ss_pred eeee
Q 019405 336 LSAV 339 (341)
Q Consensus 336 ~~~~ 339 (341)
+..+
T Consensus 1162 ~~~~ 1165 (1249)
T 3sfz_A 1162 LHSC 1165 (1249)
T ss_dssp CCCC
T ss_pred EEEe
Confidence 7654
No 82
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.4e-33 Score=264.34 Aligned_cols=278 Identities=13% Similarity=0.101 Sum_probs=233.9
Q ss_pred ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 94 (341)
-.+++++.+|.|++|++... +.+..+..|...+.+++|++++. +|++|+.||.|+|||+.+++.+..+..
T Consensus 26 ~~la~~~~~g~v~iwd~~~~-----~~~~~~~~~~~~v~~~~~s~~~~----~l~~~~~dg~i~vw~~~~~~~~~~~~~- 95 (814)
T 3mkq_A 26 PWVLTTLYSGRVEIWNYETQ-----VEVRSIQVTETPVRAGKFIARKN----WIIVGSDDFRIRVFNYNTGEKVVDFEA- 95 (814)
T ss_dssp SEEEEEETTSEEEEEETTTT-----EEEEEEECCSSCEEEEEEEGGGT----EEEEEETTSEEEEEETTTCCEEEEEEC-
T ss_pred CEEEEEeCCCEEEEEECCCC-----ceEEEEecCCCcEEEEEEeCCCC----EEEEEeCCCeEEEEECCCCcEEEEEec-
Confidence 34777888999999998775 66778888999999999999877 899999999999999999988888776
Q ss_pred CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecC-C
Q 019405 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-S 173 (341)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~-~ 173 (341)
+.+.+.++.|.+... .+++++.||.+.+|++.... .....+. .+...|.+++|+| +
T Consensus 96 -------~~~~v~~~~~s~~~~--------~l~~~~~dg~i~vw~~~~~~-------~~~~~~~-~~~~~v~~~~~~p~~ 152 (814)
T 3mkq_A 96 -------HPDYIRSIAVHPTKP--------YVLSGSDDLTVKLWNWENNW-------ALEQTFE-GHEHFVMCVAFNPKD 152 (814)
T ss_dssp -------CSSCEEEEEECSSSS--------EEEEEETTSEEEEEEGGGTS-------EEEEEEE-CCSSCEEEEEEETTE
T ss_pred -------CCCCEEEEEEeCCCC--------EEEEEcCCCEEEEEECCCCc-------eEEEEEc-CCCCcEEEEEEEcCC
Confidence 457788888877666 89999999999999986431 1233333 4678899999999 8
Q ss_pred CCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEE
Q 019405 174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS 253 (341)
Q Consensus 174 ~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 253 (341)
++.+++++.||.|++||+.+++....+..+. ...+.+++|.|.+++.+|++++.|+.|++||+++++ ++..
T Consensus 153 ~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~ 223 (814)
T 3mkq_A 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ--------ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS-CVAT 223 (814)
T ss_dssp EEEEEEEETTSEEEEEETTCSSCSEEEECCC--------TTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTE-EEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcceeEEecCC--------CCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCc-EEEE
Confidence 8999999999999999998877766665442 245889999433499999999999999999999866 4888
Q ss_pred EEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCE-EEEEeCCCcEEEEEcCC
Q 019405 254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPI-IASCGLDSYLRFWDIKT 332 (341)
Q Consensus 254 ~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~s~~~dg~v~iwd~~~ 332 (341)
+..|...|.+++|+|++.+|++++.||.|++||+.+++.+..+..+ ...+.+++|+|++.. +++++.|+.+.+|++..
T Consensus 224 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (814)
T 3mkq_A 224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG-LERSWCIATHPTGRKNYIASGFDNGFTVLSLGN 302 (814)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCS-SSSEEEEEECTTCGGGEEEEEETTEEEEEECSC
T ss_pred EcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecC-CCcEEEEEEccCCCceEEEEEeCCCEEEEEcCC
Confidence 8889999999999999999999999999999999999999999987 889999999999873 35555677899999876
Q ss_pred Cce
Q 019405 333 RQL 335 (341)
Q Consensus 333 ~~~ 335 (341)
+..
T Consensus 303 ~~~ 305 (814)
T 3mkq_A 303 DEP 305 (814)
T ss_dssp CSC
T ss_pred CCc
Confidence 543
No 83
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-35 Score=258.78 Aligned_cols=244 Identities=12% Similarity=0.084 Sum_probs=179.3
Q ss_pred ceEEEEccCCeEEEeeCCCCcchh----eeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEee
Q 019405 66 PLLAVARKNGLTDILNPLNGDLRV----AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE 141 (341)
Q Consensus 66 ~~l~~~~~dg~i~iw~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~ 141 (341)
++|++++.|++|+||++.+++... .+.. +.+.+..+.|.+..... .....|++++.||++++|++.
T Consensus 174 ~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~--------~~~~V~~v~wsp~~~~~--~~~~~LAs~s~DgtvrlWd~~ 243 (524)
T 2j04_B 174 EMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVH--------SFGEVWDLKWHEGCHAP--HLVGCLSFVSQEGTINFLEII 243 (524)
T ss_dssp --------CEEEEEEEEETTTCCEEEEEEEEE--------CCCSEEEEEECSSCCCS--SSSCEEEEEETTSCEEEEECC
T ss_pred hhhccCCCCceEEEEEccCCCCCceEEEEEEe--------cCCcEEEEEECCCCCCC--CCCceEEEEecCCeEEEEEcC
Confidence 345556688999999998766432 1222 34668888887641100 011289999999999999997
Q ss_pred ecccccc---cCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCc-eeeecCCCCCCccCccCCeeee
Q 019405 142 VTKVSAE---SSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE-KIWTAKPPPKNSLGIFTPTWFT 217 (341)
Q Consensus 142 ~~~~~~~---~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~v~ 217 (341)
....... ........+. .+...|.+++|+++ ..|++|+.||+|++||++++. +...+..| ...|.
T Consensus 244 ~~~~~~~~~~~~~~p~~~l~-~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H---------~~~V~ 312 (524)
T 2j04_B 244 DNATDVHVFKMCEKPSLTLS-LADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVH---------DSYIL 312 (524)
T ss_dssp CCSSSSSEEECCCSCSEEEC-CTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECS---------SSCEE
T ss_pred CCccccccceeecCceEEEE-cCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecc---------cccEE
Confidence 5432100 0011122332 35678999999986 589999999999999998763 23334443 36699
Q ss_pred EEEEEecCCC-CEEEEEeCCCeEEEEEcCCCCceeEEEEecCC--CeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEe
Q 019405 218 SAAFLSIDDH-RKFVAGTNDHQVRLYDTSAQRRPVMSFDFRET--PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLG 294 (341)
Q Consensus 218 ~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~ 294 (341)
++++..++++ .+|++++.|++|++||+++++. ...+.+|.. .|.+++|+|+++.+++++.|+.|++||+++++++.
T Consensus 313 sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~-~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~ 391 (524)
T 2j04_B 313 SVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIAT-TKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVH 391 (524)
T ss_dssp EEEEECCTTSCCEEEEEETTSEEEEECGGGHHH-HCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCE
T ss_pred EEEEEcCCCCCeEEEEeccCCeEEEEECCCCCc-ccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccce
Confidence 9942117777 8999999999999999998654 556666653 58899999999999999999999999999999888
Q ss_pred EEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405 295 CFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (341)
Q Consensus 295 ~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 332 (341)
.+.+| .+.|++++|+|++++|++|+.|++|++||+..
T Consensus 392 ~l~gH-~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 392 PLVSR-ETTITAIGVSRLHPMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp EEEEC-SSCEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred eeecC-CCceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence 88888 99999999999999999999999999999864
No 84
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.8e-34 Score=251.24 Aligned_cols=261 Identities=13% Similarity=0.133 Sum_probs=200.1
Q ss_pred eeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccc
Q 019405 43 ERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSR 122 (341)
Q Consensus 43 ~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (341)
.....|+..|++++|+|... .+||+|+.||+|+|||+.+++....+... +|.+.|.++.|.+.+..
T Consensus 113 ~~~~~~~~~V~~l~~~P~~~---~~lasGs~dg~i~lWd~~~~~~~~~~~~~------gH~~~V~~l~f~p~~~~----- 178 (435)
T 4e54_B 113 QKAAPFDRRATSLAWHPTHP---STVAVGSKGGDIMLWNFGIKDKPTFIKGI------GAGGSITGLKFNPLNTN----- 178 (435)
T ss_dssp CEEEECSSCEEEEEECSSCT---TCEEEEETTSCEEEECSSCCSCCEEECCC------SSSCCCCEEEECSSCTT-----
T ss_pred ccCCCCCCCEEEEEEeCCCC---CEEEEEeCCCEEEEEECCCCCceeEEEcc------CCCCCEEEEEEeCCCCC-----
Confidence 34455788899999987432 37999999999999999877655444432 46688999998764432
Q ss_pred cceeEEEcccceeEEEEeeecccccccCCceEEEEEeec--CCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeec
Q 019405 123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA--SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTA 200 (341)
Q Consensus 123 ~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~ 200 (341)
.|++++.||++++|+++.. .+..+...+ ...+.+++|+|++++|++|+.||.|++||++. +.+..+
T Consensus 179 --~l~s~s~D~~v~iwd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~ 246 (435)
T 4e54_B 179 --QFYASSMEGTTRLQDFKGN---------ILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNL 246 (435)
T ss_dssp --EEEEECSSSCEEEEETTSC---------EEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCS
T ss_pred --EEEEEeCCCEEEEeeccCC---------ceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEE
Confidence 8999999999999998532 333333222 24578899999999999999999999999864 445555
Q ss_pred CCCCCCccCccCCeeeeEEEEEecCCCC-EEEEEeCCCeEEEEEcCCCCc--eeEEEEecCCCeEEEEEcCCCceEEEEe
Q 019405 201 KPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQVRLYDTSAQRR--PVMSFDFRETPIKAVAEEPDSFNIYIGN 277 (341)
Q Consensus 201 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~g~ 277 (341)
..| ...|.+++| +|++. +|++++.|+.|++||+++.+. .+....+|..+|++++|+|++.+|++++
T Consensus 247 ~~h---------~~~v~~v~~--~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~ 315 (435)
T 4e54_B 247 RMH---------KKKVTHVAL--NPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTD 315 (435)
T ss_dssp BCC---------SSCEEEEEE--CTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEE
T ss_pred ecc---------cceEEeeee--cCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEc
Confidence 543 366999999 77765 788999999999999987543 1233456899999999999999999999
Q ss_pred CCCCEEEEECCCCeEEeEEecccc-----CceeEEEecCCCCEEEEEe------------CCCcEEEEEcCCCceeeeec
Q 019405 278 GSGDLASVDIRTGKLLGCFIGKCS-----GSIRSIARHPTLPIIASCG------------LDSYLRFWDIKTRQLLSAVC 340 (341)
Q Consensus 278 ~dg~i~iwd~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~s~~------------~dg~v~iwd~~~~~~~~~~~ 340 (341)
.||.|++||+.+++....+..|.. ..+....|+|++..+++++ .++.|++||..+++++..++
T Consensus 316 ~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~ 395 (435)
T 4e54_B 316 QKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLY 395 (435)
T ss_dssp SSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEEC
T ss_pred CCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEe
Confidence 999999999999988777765511 1234567777777666654 34579999999999887764
No 85
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.8e-34 Score=245.34 Aligned_cols=265 Identities=12% Similarity=0.066 Sum_probs=212.7
Q ss_pred ccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccc
Q 019405 45 WGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSR 124 (341)
Q Consensus 45 ~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (341)
..+|..+|.+++|+++......++++++.++.|+|||+.+++.+..+..+... .+...+.++.|.+.... ...
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~----~~~ 86 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDA---DADENFYTCAWTYDSNT----SHP 86 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECS---CTTCCEEEEEEEECTTT----CCE
T ss_pred ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeecccc---CCCCcEEEEEeccCCCC----CCC
Confidence 34699999999999864333346777777889999999988887777765322 25577888888776320 122
Q ss_pred eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecC-CCCEEEEeeCCCeEEEEECCCCceeeecCCC
Q 019405 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP 203 (341)
Q Consensus 125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~ 203 (341)
.+++++.||.+.+|++.... .+..+. .+...|.+++|+| ++++|++++.|+.|++||+++++....+...
T Consensus 87 ~l~~~~~dg~i~v~d~~~~~--------~~~~~~-~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 157 (366)
T 3k26_A 87 LLAVAGSRGIIRIINPITMQ--------CIKHYV-GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV 157 (366)
T ss_dssp EEEEEETTCEEEEECTTTCC--------EEEEEE-SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECST
T ss_pred EEEEecCCCEEEEEEchhce--------Eeeeec-CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccc
Confidence 89999999999999986433 444444 4678999999999 8999999999999999999999888877321
Q ss_pred CCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCce---------------------------eEEEEe
Q 019405 204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP---------------------------VMSFDF 256 (341)
Q Consensus 204 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---------------------------~~~~~~ 256 (341)
.. |...|.+++| +|++++|++++.|+.|++||+++++.. ......
T Consensus 158 ~~------~~~~v~~~~~--~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (366)
T 3k26_A 158 EG------HRDEVLSADY--DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDI 229 (366)
T ss_dssp TS------CSSCEEEEEE--CTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSS
T ss_pred cc------ccCceeEEEE--CCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccC
Confidence 11 3366999999 889999999999999999999875320 112223
Q ss_pred cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCe--------------EEeEEeccccCceeEEEecCC--CCEEEEEe
Q 019405 257 RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK--------------LLGCFIGKCSGSIRSIARHPT--LPIIASCG 320 (341)
Q Consensus 257 ~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~--------------~~~~~~~~~~~~i~~~~~~~~--~~~l~s~~ 320 (341)
|...|.+++|+ +.+|++++.|+.|++||+++++ .+..+..| ...|++++|+|+ +++|++++
T Consensus 230 ~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~~~l~~~~ 306 (366)
T 3k26_A 230 HRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS-QCDIWYMRFSMDFWQKMLALGN 306 (366)
T ss_dssp CSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS-SCCSSCCCCEECTTSSEEEEEC
T ss_pred CcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheecccccc-CCcEEEEEEcCCCCCcEEEEEe
Confidence 88999999998 6699999999999999998763 47788887 889999999999 99999999
Q ss_pred CCCcEEEEEcCCCcee
Q 019405 321 LDSYLRFWDIKTRQLL 336 (341)
Q Consensus 321 ~dg~v~iwd~~~~~~~ 336 (341)
.||.|++||+.+++++
T Consensus 307 ~dg~i~vwd~~~~~~~ 322 (366)
T 3k26_A 307 QVGKLYVWDLEVEDPH 322 (366)
T ss_dssp TTSCEEEEECCSSSGG
T ss_pred cCCcEEEEECCCCCCc
Confidence 9999999999988654
No 86
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=3.8e-33 Score=242.55 Aligned_cols=257 Identities=14% Similarity=0.142 Sum_probs=205.3
Q ss_pred ccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCC----------CcchheeeccCCCCCCCCCCceeeEeeeec
Q 019405 45 WGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN----------GDLRVAISNAGDSGAQPEDDGIVGLHLFKR 114 (341)
Q Consensus 45 ~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (341)
.-.|...+.+++|+++. +.+|++++.||.|+||++.+ .+.+..+.. |...+.++.|.+.
T Consensus 124 ~~~h~~~v~~l~~~p~~---~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~--------h~~~v~~l~~~~~ 192 (430)
T 2xyi_A 124 KINHEGEVNRARYMPQN---ACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRG--------HQKEGYGLSWNPN 192 (430)
T ss_dssp EEEESSCCSEEEEETTE---EEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEEC--------CSSCCCCEEECTT
T ss_pred EEcCCCcEEEEEECCCC---CcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecC--------CCCCeEEEEeCCC
Confidence 34688999999999862 23799999999999999976 344444444 4567888888665
Q ss_pred cccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecC-CCCEEEEeeCCCeEEEEECCC
Q 019405 115 QREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDK 193 (341)
Q Consensus 115 ~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~i~d~~~ 193 (341)
... .|++++.||.+.+|++........ .......+. .+...|.+++|+| ++.++++++.|+.|++||+++
T Consensus 193 ~~~-------~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~-~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~ 263 (430)
T 2xyi_A 193 LNG-------YLLSASDDHTICLWDINATPKEHR-VIDAKNIFT-GHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRN 263 (430)
T ss_dssp STT-------EEEEECTTSCEEEEETTSCCBGGG-EEECSEEEC-CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred CCC-------eEEEEeCCCeEEEEeCCCCCCCCc-eeccceeec-CCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCC
Confidence 442 899999999999999875321100 000123332 4677899999999 678999999999999999997
Q ss_pred C---ceeeecCCCCCCccCccCCeeeeEEEEEecCCCC-EEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCC
Q 019405 194 C---EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPD 269 (341)
Q Consensus 194 ~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 269 (341)
+ +....+..+ ...|++++| +|++. +|++++.||.|++||++....++..+..|...|.+++|+|+
T Consensus 264 ~~~~~~~~~~~~~---------~~~v~~i~~--~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~ 332 (430)
T 2xyi_A 264 NNTSKPSHTVDAH---------TAEVNCLSF--NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 332 (430)
T ss_dssp SCSSSCSEEEECC---------SSCEEEEEE--CSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSS
T ss_pred CCCCcceeEeecC---------CCCeEEEEe--CCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCC
Confidence 6 344444433 366999999 78776 68899999999999999866678899999999999999999
Q ss_pred Cc-eEEEEeCCCCEEEEECCC--------------CeEEeEEeccccCceeEEEecCCCC-EEEEEeCCCcEEEEEcCCC
Q 019405 270 SF-NIYIGNGSGDLASVDIRT--------------GKLLGCFIGKCSGSIRSIARHPTLP-IIASCGLDSYLRFWDIKTR 333 (341)
Q Consensus 270 ~~-~l~~g~~dg~i~iwd~~~--------------~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~ 333 (341)
+. +|++++.|+.|++||+.. .+++..+.+| ...|++++|+|+++ +|++++.||.|++|++..+
T Consensus 333 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 333 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH-TAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCC-SSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCC-CCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 85 689999999999999986 3667777787 88999999999999 8999999999999999754
No 87
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=2e-33 Score=228.81 Aligned_cols=261 Identities=10% Similarity=0.006 Sum_probs=178.9
Q ss_pred eecCCCCCceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCC-----------------------
Q 019405 7 LECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQ----------------------- 63 (341)
Q Consensus 7 ~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~----------------------- 63 (341)
-|.++|-.+-+++++ ...|++|+..+. -.|+.+++|..|+.+|..+++.+|...
T Consensus 47 ~~~~~~~~~~~~~~~-~~~v~lw~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~ 123 (356)
T 2w18_A 47 WERAGCKEPCIITAC-EDVVSLWKALDA--WQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDD 123 (356)
T ss_dssp EC----CEEEEEEEE-SSEEEEEEESSS--SBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC----
T ss_pred eccCCCCccEEEEec-cceEEEcccCCC--ccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCc
Confidence 356677666566654 457899999886 567888999888888777777664441
Q ss_pred --CCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEc---ccceeEEE
Q 019405 64 --NDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT---TKGKASMR 138 (341)
Q Consensus 64 --~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~g~~~i~ 138 (341)
.++++++++. .+++|++.++ .++..+ .|+.+++|
T Consensus 124 ~~~~~~l~s~g~--~~~v~~l~~g---------------------------------------~lv~ss~~g~d~~V~~~ 162 (356)
T 2w18_A 124 ESEKQVLLKSGN--IKAVLGLTKR---------------------------------------RLVSSSGTLSDQQVEVM 162 (356)
T ss_dssp --CCEEEEEEEE--EEEEEEETTT---------------------------------------EEEEEESSSTTCEEEEE
T ss_pred cccccEEEeCCC--eEEEEecCCC---------------------------------------cEEEecccCCCCcEEEE
Confidence 1333333331 1333332111 333332 47778888
Q ss_pred EeeecccccccCCceEEEEEeecCCceEEEEecC---CCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCee
Q 019405 139 SIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI---SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTW 215 (341)
Q Consensus 139 ~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~---~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (341)
++.. ++....-...+...+..++|++ ++.+|++++.|++|++||+++++.+..+..+... ...
T Consensus 163 ~~s~--------dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~------v~~ 228 (356)
T 2w18_A 163 TFAE--------DGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSY------QAS 228 (356)
T ss_dssp EECT--------TSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---------CC
T ss_pred EECC--------CCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcc------eee
Confidence 7742 2222222223566777888888 7899999999999999999999999998754321 134
Q ss_pred eeEEEEEecCCCCEE------------EEEeCCCeEEEEEcCCCCceeEEE-----EecCCCeEEEEEcCCCceEEEEeC
Q 019405 216 FTSAAFLSIDDHRKF------------VAGTNDHQVRLYDTSAQRRPVMSF-----DFRETPIKAVAEEPDSFNIYIGNG 278 (341)
Q Consensus 216 v~~~~~~~~~~~~~l------------~~~~~d~~i~iwd~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~g~~ 278 (341)
+.+++| +|++.++ ++|+.|++|++||..+++. +..+ .+|...+.+..+ ++.++++|+.
T Consensus 229 v~~vaf--SpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~-l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~ 303 (356)
T 2w18_A 229 VCHKAY--SEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLS-VGVMLYCLPPGQAGRFLEGDV--KDHCAAAILT 303 (356)
T ss_dssp CEEEEE--EETTEEEEEEC------------CCEEEEEEETTTTEE-EEEEEECCCTTCCCCEEEEEE--ETTEEEEEET
T ss_pred eEEEEE--CCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEE-EEEEEeeccCCCcceeEcccc--CCCEEEEEcC
Confidence 777889 7788776 5688899999999998764 4444 245544444444 3778999999
Q ss_pred CCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEc
Q 019405 279 SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDI 330 (341)
Q Consensus 279 dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~ 330 (341)
|++|+|||+.+++++.++.+|+...+..++|+|+|++|++|+.|++|+|||+
T Consensus 304 DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 304 SGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp TSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 9999999999999999999883334456899999999999999999999996
No 88
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-33 Score=240.91 Aligned_cols=262 Identities=11% Similarity=0.063 Sum_probs=208.0
Q ss_pred CCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeC----CCCcc------hheeeccCCC--CCCCCCCceeeEeeeec
Q 019405 47 DPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNP----LNGDL------RVAISNAGDS--GAQPEDDGIVGLHLFKR 114 (341)
Q Consensus 47 ~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~----~~~~~------~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 114 (341)
.|...+.+++|++++. .+|++|+.||.|++|++ .+++. ...+...... ....+.+.+.++.+.+.
T Consensus 43 ~~~~~v~~~~~s~~~~---~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 119 (425)
T 1r5m_A 43 VKLDNIVSSTWNPLDE---SILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHD 119 (425)
T ss_dssp EECSCCSEEEECSSCT---TEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTT
T ss_pred eccCceEEEEECCCCC---cEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCC
Confidence 4668999999887654 27999999999999999 88773 3333221000 01124568888888776
Q ss_pred cccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCC
Q 019405 115 QREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC 194 (341)
Q Consensus 115 ~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~ 194 (341)
.. .|++++.+|.+.+|+.. ...+..+. .+...|.+++|+|++++|++++.|+.|++||+.++
T Consensus 120 ~~--------~l~~~~~dg~i~i~~~~---------~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 181 (425)
T 1r5m_A 120 GN--------SIVTGVENGELRLWNKT---------GALLNVLN-FHRAPIVSVKWNKDGTHIISMDVENVTILWNVISG 181 (425)
T ss_dssp SS--------EEEEEETTSCEEEEETT---------SCEEEEEC-CCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTT
T ss_pred CC--------EEEEEeCCCeEEEEeCC---------CCeeeecc-CCCccEEEEEECCCCCEEEEEecCCeEEEEECCCC
Confidence 55 89999999999999821 22344443 46788999999999999999999999999999988
Q ss_pred ceeeecCCCCCC-----------------------------------------------ccCccCCeeeeEEEEEecCCC
Q 019405 195 EKIWTAKPPPKN-----------------------------------------------SLGIFTPTWFTSAAFLSIDDH 227 (341)
Q Consensus 195 ~~~~~~~~~~~~-----------------------------------------------~~~~~~~~~v~~~~~~~~~~~ 227 (341)
+....+..+... .....|...|.+++| +|++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~--~~~~ 259 (425)
T 1r5m_A 182 TVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEF--NDTN 259 (425)
T ss_dssp EEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEE--ETTT
T ss_pred cEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEE--CCCC
Confidence 877665544321 001135677999999 8899
Q ss_pred CEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEE
Q 019405 228 RKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSI 307 (341)
Q Consensus 228 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~ 307 (341)
++|++++.|+.|++||+++++. +..+..|...|.+++|+|++ ++++++.|+.|++||+++++.+..+..| ...|.++
T Consensus 260 ~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~i~~~ 336 (425)
T 1r5m_A 260 KLLLSASDDGTLRIWHGGNGNS-QNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVD-GVPIFAG 336 (425)
T ss_dssp TEEEEEETTSCEEEECSSSBSC-SEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECT-TCCEEEE
T ss_pred CEEEEEcCCCEEEEEECCCCcc-ceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccC-CccEEEE
Confidence 9999999999999999998664 78888899999999999999 9999999999999999999999999987 8899999
Q ss_pred EecCCCCEEEEEeCCCcEEEEEcCCCc
Q 019405 308 ARHPTLPIIASCGLDSYLRFWDIKTRQ 334 (341)
Q Consensus 308 ~~~~~~~~l~s~~~dg~v~iwd~~~~~ 334 (341)
+|+|++++|++++.||.|++||+++++
T Consensus 337 ~~s~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 337 RISQDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp EECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred EEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 999999999999999999999999887
No 89
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.1e-35 Score=250.07 Aligned_cols=245 Identities=10% Similarity=0.049 Sum_probs=192.2
Q ss_pred CCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCC--cchheeeccCCCCCCCCCCceeeEeeeeccccccccccce
Q 019405 48 PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG--DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT 125 (341)
Q Consensus 48 ~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (341)
+..+|.+++|++++. +|++|+.|+.|+|||+.++ +.+..+.. |...+.++.+.+... .
T Consensus 10 ~~~~v~~~~~s~~g~----~l~~~~~d~~i~iw~~~~~~~~~~~~~~~--------h~~~v~~~~~s~~~~--------~ 69 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRT----EFVTTTATNQVELYEQDGNGWKHARTFSD--------HDKIVTCVDWAPKSN--------R 69 (377)
T ss_dssp CSSCCSCCEECSSSS----EEECCCSSSCBCEEEEETTEEEECCCBCC--------CSSCEEEEEECTTTC--------C
T ss_pred CCCcEEEEEECCCCC----EEEEecCCCEEEEEEccCCceEEEEEEec--------CCceEEEEEEeCCCC--------E
Confidence 667899999998766 8999999999999999887 56666654 557888888877655 8
Q ss_pred eEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCce---eeecCC
Q 019405 126 LLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK---IWTAKP 202 (341)
Q Consensus 126 l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~---~~~~~~ 202 (341)
|++++.|+.+++|++..... ...+... ..+...|.+++|+|++++|++++.|+.|++||+++++. ...+..
T Consensus 70 l~s~s~d~~v~vwd~~~~~~-----~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 143 (377)
T 3dwl_C 70 IVTCSQDRNAYVYEKRPDGT-----WKQTLVL-LRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKR 143 (377)
T ss_dssp EEEEETTSSEEEC------C-----CCCEEEC-CCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECS
T ss_pred EEEEeCCCeEEEEEcCCCCc-----eeeeeEe-cccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeec
Confidence 99999999999999875430 1122222 24678899999999999999999999999999998763 444443
Q ss_pred CCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCC-----------------CceeEEEEecCCCeEEEE
Q 019405 203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ-----------------RRPVMSFDFRETPIKAVA 265 (341)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-----------------~~~~~~~~~~~~~v~~~~ 265 (341)
. |...|.+++| +|++++|++++.|+.|++||++.. ..++..+ .|...|.+++
T Consensus 144 ~--------h~~~v~~~~~--~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~ 212 (377)
T 3dwl_C 144 P--------LRSTILSLDW--HPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVG 212 (377)
T ss_dssp S--------CCSCEEEEEE--CTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEE
T ss_pred c--------cCCCeEEEEE--cCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEE
Confidence 1 3366999999 889999999999999999998631 1234445 7899999999
Q ss_pred EcCCCceEEEEeCCCCEEEEECCCCeE----EeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcC
Q 019405 266 EEPDSFNIYIGNGSGDLASVDIRTGKL----LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331 (341)
Q Consensus 266 ~~~~~~~l~~g~~dg~i~iwd~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~ 331 (341)
|+|++++|++++.|+.|++||+++++. +..+.+| ...|.+++|+|++++|++++.|+.+ +|+..
T Consensus 213 ~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 213 FSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLS-QLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp ECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECS-SSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred ECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCC-CCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 999999999999999999999999877 7888888 8899999999999999998776655 66655
No 90
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=3.5e-33 Score=243.97 Aligned_cols=294 Identities=13% Similarity=0.093 Sum_probs=214.4
Q ss_pred ceeeeecCCCCeEEEEEecCc------cCccceeeeccCCC------------CCceeEEEeccCCCCCceEEEEccCCe
Q 019405 15 LRALTFDSLGLIKVIEARGEH------GGVPKVVERWGDPH------------SSNCVLAASIDDSQNDPLLAVARKNGL 76 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~------~g~~~~~~~~~~~~------------~~~~~~~~s~~~~~~~~~l~~~~~dg~ 76 (341)
-.+++++.||.|++|++.... .+.+++...+.+|. ..|..++|+++..+ .+|++++.|++
T Consensus 41 ~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~--~~l~s~s~d~~ 118 (447)
T 3dw8_B 41 ELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNA--AQFLLSTNDKT 118 (447)
T ss_dssp SEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSS--SEEEEEECSSC
T ss_pred CEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCc--ceEEEeCCCCe
Confidence 457888999999999998752 12333566788887 88999999987631 37999999999
Q ss_pred EEEeeCCCCcchheeeccCC--------------------------------CCCCCCCCceeeEeeeeccccccccccc
Q 019405 77 TDILNPLNGDLRVAISNAGD--------------------------------SGAQPEDDGIVGLHLFKRQREESSSRSR 124 (341)
Q Consensus 77 i~iw~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (341)
|++||+.+++.......... .....|...+.++.+.+...
T Consensus 119 i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-------- 190 (447)
T 3dw8_B 119 IKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYE-------- 190 (447)
T ss_dssp EEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSS--------
T ss_pred EEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCC--------
Confidence 99999976443211000000 00124667788888877555
Q ss_pred eeEEEcccceeEEEEeeecccccccCCceEEEE------EeecCCceEEEEecCCC-CEEEEeeCCCeEEEEECCCCce-
Q 019405 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSW------NVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEK- 196 (341)
Q Consensus 125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~------~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~- 196 (341)
.++++ .|+.+++|++..... .+..+ ...+...|.+++|+|++ ++|++++.|+.|++||+++++.
T Consensus 191 ~l~s~-~d~~i~iwd~~~~~~-------~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 262 (447)
T 3dw8_B 191 TYLSA-DDLRINLWHLEITDR-------SFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC 262 (447)
T ss_dssp EEEEE-CSSEEEEEETTEEEE-------EEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSS
T ss_pred EEEEe-CCCeEEEEECCCCCc-------eeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccc
Confidence 78888 799999999863221 22322 12356789999999998 9999999999999999998776
Q ss_pred ---eeecCCCCCC---ccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCC----------
Q 019405 197 ---IWTAKPPPKN---SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETP---------- 260 (341)
Q Consensus 197 ---~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~---------- 260 (341)
...+..+... .....|...|.+++| +|++.+|++++. +.|++||++....++..+..|...
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~ 339 (447)
T 3dw8_B 263 DRHSKLFEEPEDPSNRSFFSEIISSISDVKF--SHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYEN 339 (447)
T ss_dssp CTTCEEECCC-----CCHHHHHTTCEEEEEE--CTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHT
T ss_pred cceeeEeccCCCccccccccccCceEEEEEE--CCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccc
Confidence 5555554310 000001126999999 899999999998 999999999734458888877532
Q ss_pred -----eEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEecc--------------------------------ccCc
Q 019405 261 -----IKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK--------------------------------CSGS 303 (341)
Q Consensus 261 -----v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~--------------------------------~~~~ 303 (341)
+..++|+|++++|++|+.||.|++||+.+++.+. +..+ ....
T Consensus 340 ~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (447)
T 3dw8_B 340 DCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKK 418 (447)
T ss_dssp SGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSC
T ss_pred cccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCcccccccccccccCCc
Confidence 2349999999999999999999999999887753 2221 1356
Q ss_pred eeEEEecCCCCEEEEEeCCCcEEEEEcC
Q 019405 304 IRSIARHPTLPIIASCGLDSYLRFWDIK 331 (341)
Q Consensus 304 i~~~~~~~~~~~l~s~~~dg~v~iwd~~ 331 (341)
|..++|+|++++||+++.++ +++|.-+
T Consensus 419 i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 419 ILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp CCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred eeEEEECCCCCEEEEEecce-eeeeccc
Confidence 89999999999999998875 8888654
No 91
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.7e-33 Score=239.36 Aligned_cols=264 Identities=11% Similarity=0.082 Sum_probs=204.9
Q ss_pred ceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCC-Ccch-heeeccCCCCCCCCCCceeeEeeeecccc
Q 019405 40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN-GDLR-VAISNAGDSGAQPEDDGIVGLHLFKRQRE 117 (341)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (341)
+.+..+.+|...|.+++|+++.. +|++|++|+.||.|+|||+.+ ++.+ ..+.. +...+.++.+.+...
T Consensus 30 ~~~~~~~~h~~~v~~~~~~~~~~-~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~--------h~~~v~~~~~~~~~~- 99 (368)
T 3mmy_A 30 KDIEVTSSPDDSIGCLSFSPPTL-PGNFLIAGSWANDVRCWEVQDSGQTIPKAQQM--------HTGPVLDVCWSDDGS- 99 (368)
T ss_dssp CCEECSSCCSSCEEEEEECCTTS-SSEEEEEEETTSEEEEEEECTTSCEEEEEEEE--------CSSCEEEEEECTTSS-
T ss_pred ceeEeccCCCCceEEEEEcCCCC-CceEEEEECCCCcEEEEEcCCCCceeEEEecc--------ccCCEEEEEECcCCC-
Confidence 45667888999999999998741 134899999999999999987 4444 44444 457888888877655
Q ss_pred ccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEe--cCCCCEEEEeeCCCeEEEEECCCCc
Q 019405 118 ESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV--DISEKFSLFGGKGVEVNVWDLDKCE 195 (341)
Q Consensus 118 ~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~--~~~~~~l~~~~~d~~v~i~d~~~~~ 195 (341)
.+++++.||.+.+|++.... .+. ...+...|.+++| ++++++|++++.|+.|++||+++++
T Consensus 100 -------~l~s~~~dg~v~iwd~~~~~--------~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 162 (368)
T 3mmy_A 100 -------KVFTASCDKTAKMWDLSSNQ--------AIQ--IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN 162 (368)
T ss_dssp -------EEEEEETTSEEEEEETTTTE--------EEE--EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS
T ss_pred -------EEEEEcCCCcEEEEEcCCCC--------cee--eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc
Confidence 89999999999999986433 233 2347789999999 8999999999999999999999887
Q ss_pred eeeecCCCCCC--------------------------------ccCccCCeeeeEEEEEecCCC--CEEEEEeCCCeEEE
Q 019405 196 KIWTAKPPPKN--------------------------------SLGIFTPTWFTSAAFLSIDDH--RKFVAGTNDHQVRL 241 (341)
Q Consensus 196 ~~~~~~~~~~~--------------------------------~~~~~~~~~v~~~~~~~~~~~--~~l~~~~~d~~i~i 241 (341)
.+..+..+... .........+.++.+.+.... ..+++++.|+.|++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i 242 (368)
T 3mmy_A 163 PMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAI 242 (368)
T ss_dssp CSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEE
T ss_pred EEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEE
Confidence 66655543210 000011123444555222221 23999999999999
Q ss_pred EEcCCCC--ceeEEEEecCC------------CeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEE
Q 019405 242 YDTSAQR--RPVMSFDFRET------------PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSI 307 (341)
Q Consensus 242 wd~~~~~--~~~~~~~~~~~------------~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~ 307 (341)
||++... ..+..+..|.. +|++++|+|++++|++|+.||.|++||+++++++..+..| ..+|+++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~ 321 (368)
T 3mmy_A 243 HYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQL-DQPISAC 321 (368)
T ss_dssp EESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSCEEEE
T ss_pred EecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCC-CCCceEE
Confidence 9999753 34667777765 7999999999999999999999999999999999999988 8999999
Q ss_pred EecCCCCEEEEEeCCCcEEEEEcC
Q 019405 308 ARHPTLPIIASCGLDSYLRFWDIK 331 (341)
Q Consensus 308 ~~~~~~~~l~s~~~dg~v~iwd~~ 331 (341)
+|+|++++|++++.|+..+.|++.
T Consensus 322 ~~s~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 322 CFNHNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp EECTTSSCEEEEECCCSTTCGGGC
T ss_pred EECCCCCeEEEEeccccccccccc
Confidence 999999999999998865555443
No 92
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=6.6e-33 Score=233.70 Aligned_cols=276 Identities=12% Similarity=0.049 Sum_probs=214.3
Q ss_pred ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCc-eEEEEccCCeEEEeeC-CCCcchheee
Q 019405 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDP-LLAVARKNGLTDILNP-LNGDLRVAIS 92 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~-~l~~~~~dg~i~iw~~-~~~~~~~~~~ 92 (341)
-.+++++.||.|++|++...... .....+..|...+.+++|+++ ++ +|++|+.||.|++||+ .+++. ..+.
T Consensus 24 ~~l~~~~~d~~v~iw~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~ 96 (342)
T 1yfq_A 24 SLLLITSWDGSLTVYKFDIQAKN--VDLLQSLRYKHPLLCCNFIDN----TDLQIYVGTVQGEILKVDLIGSPSF-QALT 96 (342)
T ss_dssp TEEEEEETTSEEEEEEEETTTTE--EEEEEEEECSSCEEEEEEEES----SSEEEEEEETTSCEEEECSSSSSSE-EECB
T ss_pred CEEEEEcCCCeEEEEEeCCCCcc--ccceeeeecCCceEEEEECCC----CCcEEEEEcCCCeEEEEEeccCCce-Eecc
Confidence 34788889999999999876211 123344478899999999875 45 6999999999999999 87654 3333
Q ss_pred ccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeeccccccc-CCceEEEEEeecCCceEEEEec
Q 019405 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAES-SCSTVKSWNVCASGTIAFSKVD 171 (341)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~-~~~~v~~~~~~~~~~i~~~~~~ 171 (341)
.. .+...+.++.+.+ .. .+++++.|+.+.+|++......... ....+.. ..+...+.+++|+
T Consensus 97 ~~------~~~~~v~~l~~~~-~~--------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~ 159 (342)
T 1yfq_A 97 NN------EANLGICRICKYG-DD--------KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNN--TKVKNKIFTMDTN 159 (342)
T ss_dssp SC------CCCSCEEEEEEET-TT--------EEEEEETTSEEEEECHHHHTTBCEEEEESCSSS--SSSCCCEEEEEEC
T ss_pred cc------CCCCceEEEEeCC-CC--------EEEEEcCCCeEEEEcccccccccccccCCeeeE--EeeCCceEEEEec
Confidence 20 1557888888877 55 9999999999999998751100000 0001112 2256789999999
Q ss_pred CCCCEEEEeeCCCeEEEEECCC-Cceee--ecCCCCCCccCccCCeeeeEEEEEecC-CCCEEEEEeCCCeEEEEEcCCC
Q 019405 172 ISEKFSLFGGKGVEVNVWDLDK-CEKIW--TAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQVRLYDTSAQ 247 (341)
Q Consensus 172 ~~~~~l~~~~~d~~v~i~d~~~-~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~ 247 (341)
|++ +++++.|+.|++||+++ +.... .... +...+.+++| +| +++++++++.||.|++|+++..
T Consensus 160 ~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~---------~~~~i~~i~~--~~~~~~~l~~~~~dg~i~i~~~~~~ 226 (342)
T 1yfq_A 160 SSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESG---------LKYQIRDVAL--LPKEQEGYACSSIDGRVAVEFFDDQ 226 (342)
T ss_dssp SSE--EEEEESTTEEEEEESSCCTTCCCEEEECS---------CSSCEEEEEE--CSGGGCEEEEEETTSEEEEEECCTT
T ss_pred CCc--EEEEeCCCeEEEEECCccccccceeeecC---------CCCceeEEEE--CCCCCCEEEEEecCCcEEEEEEcCC
Confidence 877 89999999999999987 54321 1111 2356999999 88 9999999999999999999876
Q ss_pred -----CceeEEEEecCC---------CeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCC
Q 019405 248 -----RRPVMSFDFRET---------PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL 313 (341)
Q Consensus 248 -----~~~~~~~~~~~~---------~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~ 313 (341)
..+...+..|.. .|.+++|+|++++|++++.||.|++||+.+++++..+.+||..+|.+++ |++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~ 304 (342)
T 1yfq_A 227 GDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSD 304 (342)
T ss_dssp CCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECS
T ss_pred CcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCC
Confidence 245788888865 9999999999999999999999999999999999999987688999999 999
Q ss_pred CEEEEEeCCCc-EEEEE
Q 019405 314 PIIASCGLDSY-LRFWD 329 (341)
Q Consensus 314 ~~l~s~~~dg~-v~iwd 329 (341)
++|++++.||. .+.|.
T Consensus 305 ~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 305 NILCLATSDDTFKTNAA 321 (342)
T ss_dssp SEEEEEEECTHHHHCSS
T ss_pred CeEEEEecCCccccccc
Confidence 99999999998 44443
No 93
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8e-34 Score=239.56 Aligned_cols=238 Identities=8% Similarity=0.055 Sum_probs=183.4
Q ss_pred CCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeec
Q 019405 64 NDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT 143 (341)
Q Consensus 64 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~ 143 (341)
++.+|++|+.||+|++||+.+++.+..+.. ..+.++.+.+ .+++++.|+.+++|+....
T Consensus 47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~----------~~v~~~~~~~-----------~~~s~s~D~~i~~w~~~~~ 105 (343)
T 3lrv_A 47 DKWVCMCRCEDGALHFTQLKDSKTITTITT----------PNPRTGGEHP-----------AIISRGPCNRLLLLYPGNQ 105 (343)
T ss_dssp EEEEEEEEEETTEEEEEEESSSSCEEEEEE----------ECCCTTCCCC-----------SEEEECSTTEEEEEETTTE
T ss_pred CCCEEEEECCCCcEEEEECCCCcEEEEEec----------CCceeeeeCC-----------ceEEecCCCeEEEEEccCc
Confidence 345899999999999999999888777653 2232232211 3889999999999986532
Q ss_pred cccccc-CCceEEEEEeecCCceEEEEecC--CCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEE
Q 019405 144 KVSAES-SCSTVKSWNVCASGTIAFSKVDI--SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAA 220 (341)
Q Consensus 144 ~~~~~~-~~~~v~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 220 (341)
...... ....++.....+...|.+++++| +++++++++.|+.|++||+++++.......+. ...+.+++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~--------~~~i~~~~ 177 (343)
T 3lrv_A 106 ITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKS--------DVEYSSGV 177 (343)
T ss_dssp EEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCS--------SCCCCEEE
T ss_pred eEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCC--------CCceEEEE
Confidence 111111 11235555555667899999999 99999999999999999999988865554332 24589999
Q ss_pred EEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEe-cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEec-
Q 019405 221 FLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG- 298 (341)
Q Consensus 221 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~- 298 (341)
| +|++.+|++|+.|+.|++||+++++.....+.. |..+|++++|+|++.+|++++ ++.|++||+++++.+..+..
T Consensus 178 ~--~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~ 254 (343)
T 3lrv_A 178 L--HKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTY 254 (343)
T ss_dssp E--CTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCC
T ss_pred E--CCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeeccc
Confidence 9 899999999999999999999998763377887 999999999999999999999 55999999998877655443
Q ss_pred --cccCcee--EEEecCCCCEEEEEeC-CCcEEEEEcCCCc
Q 019405 299 --KCSGSIR--SIARHPTLPIIASCGL-DSYLRFWDIKTRQ 334 (341)
Q Consensus 299 --~~~~~i~--~~~~~~~~~~l~s~~~-dg~v~iwd~~~~~ 334 (341)
| ...+. +++|+|++++|++++. |+.|++|++.++.
T Consensus 255 ~~~-~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 255 TIP-EFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp BC------CCEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred ccc-cccccceEEEECCCCCEEEEecCCCCcEEEEEEcccc
Confidence 2 33444 6999999999999998 9999999996654
No 94
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.9e-34 Score=263.70 Aligned_cols=253 Identities=12% Similarity=0.078 Sum_probs=201.8
Q ss_pred eeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCC--CCcchheeeccCCCCCCCCCCceeeEeeeec--cccc
Q 019405 43 ERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPL--NGDLRVAISNAGDSGAQPEDDGIVGLHLFKR--QREE 118 (341)
Q Consensus 43 ~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 118 (341)
..+.+|.+.|++++|++++. +|++|+.||.|+|||+. +++....+.. |.+.+.++.+.+. ..
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~----~latg~~dg~I~vwd~~~~~~~~~~~l~~--------h~~~V~~l~~s~~~~~~-- 68 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGK----RLATCSSDKTIKIFEVEGETHKLIDTLTG--------HEGPVWRVDWAHPKFGT-- 68 (753)
T ss_dssp -----CCCCEEEECCCSSSC----CEEEEETTTEEEEEEEETTEEEEEEEECC--------CSSCEEEEEECCTTSCS--
T ss_pred eecccCcceeEEEEECCCCC----eEEEEECCCcEEEEecCCCCCccceeccC--------CcCceEEEEecCCCCCC--
Confidence 35678999999999987765 89999999999999997 3445555554 5578989988765 33
Q ss_pred cccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCC--CCEEEEeeCCCeEEEEECCCCce
Q 019405 119 SSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS--EKFSLFGGKGVEVNVWDLDKCEK 196 (341)
Q Consensus 119 ~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~v~i~d~~~~~~ 196 (341)
.+++++.||.+++|++..... ..+... ..+...|.+++|+|+ ++++++++.||.|++||++++..
T Consensus 69 ------~l~s~s~Dg~I~vwd~~~~~~------~~~~~~-~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~ 135 (753)
T 3jro_A 69 ------ILASCSYDGKVLIWKEENGRW------SQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT 135 (753)
T ss_dssp ------EEEEEETTSCEEEEEEETTEE------EEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC
T ss_pred ------EEEEEeCCCeEEEEECCCCcc------cccccc-cCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC
Confidence 899999999999999875321 022222 346789999999999 99999999999999999987633
Q ss_pred e--eecCCCCCCccCccCCeeeeEEEEEecC-------------CCCEEEEEeCCCeEEEEEcCCCC---ceeEEEEecC
Q 019405 197 I--WTAKPPPKNSLGIFTPTWFTSAAFLSID-------------DHRKFVAGTNDHQVRLYDTSAQR---RPVMSFDFRE 258 (341)
Q Consensus 197 ~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------------~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~ 258 (341)
. ..+.. |...|.+++| +| ++.++++++.||.|++||++++. .+...+..|.
T Consensus 136 ~~~~~~~~---------~~~~v~~l~~--~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~ 204 (753)
T 3jro_A 136 TSPIIIDA---------HAIGVNSASW--APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHS 204 (753)
T ss_dssp CCCEEEEC---------CSSCEEEEEE--CCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCS
T ss_pred cceeEeec---------CCCceEEEEe--cCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCC
Confidence 2 22222 3466999999 66 58899999999999999998764 3356677899
Q ss_pred CCeEEEEEcCC---CceEEEEeCCCCEEEEECCCCe-----EEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEc
Q 019405 259 TPIKAVAEEPD---SFNIYIGNGSGDLASVDIRTGK-----LLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDI 330 (341)
Q Consensus 259 ~~v~~~~~~~~---~~~l~~g~~dg~i~iwd~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~ 330 (341)
.+|++++|+|+ +.+|++|+.||.|++||+++++ .+.....| ...|++++|+|++++|++++.||.|++||+
T Consensus 205 ~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~ 283 (753)
T 3jro_A 205 DWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF-PDVLWRASWSLSGNVLALSGGDNKVTLWKE 283 (753)
T ss_dssp SCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCC-SSCCCCEEECTTTCCEEEECSSSCEECCBC
T ss_pred CcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCC-CCceEEEEEcCCCCEEEEEcCCCEEEEEec
Confidence 99999999999 8999999999999999998864 23333345 789999999999999999999999999999
Q ss_pred CCCc
Q 019405 331 KTRQ 334 (341)
Q Consensus 331 ~~~~ 334 (341)
.++.
T Consensus 284 ~~~~ 287 (753)
T 3jro_A 284 NLEG 287 (753)
T ss_dssp CSSS
T ss_pred CCCC
Confidence 8643
No 95
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=4.8e-32 Score=238.04 Aligned_cols=257 Identities=12% Similarity=0.162 Sum_probs=203.7
Q ss_pred eeeccCCCCCc-eeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccc
Q 019405 42 VERWGDPHSSN-CVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS 120 (341)
Q Consensus 42 ~~~~~~~~~~~-~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (341)
...+.+|...+ .++.+ ++ ++|++|+.||+|++||+.+++.+..+.. |.+.+.++.+.+ +.
T Consensus 114 ~~~l~~h~~~v~~~~~~--~~----~~l~sgs~dg~i~vwd~~~~~~~~~~~~--------h~~~V~~l~~~~-~~---- 174 (464)
T 3v7d_B 114 RTTLRGHMTSVITCLQF--ED----NYVITGADDKMIRVYDSINKKFLLQLSG--------HDGGVWALKYAH-GG---- 174 (464)
T ss_dssp EEEEECCSSSCEEEEEE--ET----TEEEEEETTSCEEEEETTTTEEEEEECC--------CSSCEEEEEECS-TT----
T ss_pred eEEEcCCCCCcEEEEEE--CC----CEEEEEcCCCcEEEEECCCCcEEEEEeC--------CCcCEEEEEEcC-CC----
Confidence 34677787775 44444 33 3899999999999999999998888776 457788888743 33
Q ss_pred cccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEec--CCCCEEEEeeCCCeEEEEECCCCceee
Q 019405 121 SRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD--ISEKFSLFGGKGVEVNVWDLDKCEKIW 198 (341)
Q Consensus 121 ~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~--~~~~~l~~~~~d~~v~i~d~~~~~~~~ 198 (341)
.+++++.||.+++|++.... .+..+. .+...|.+++++ ++++++++++.|+.|++||++++....
T Consensus 175 ----~l~s~s~dg~i~vwd~~~~~--------~~~~~~-~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~ 241 (464)
T 3v7d_B 175 ----ILVSGSTDRTVRVWDIKKGC--------CTHVFE-GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVP 241 (464)
T ss_dssp ----EEEEEETTSCEEEEETTTTE--------EEEEEC-CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC-
T ss_pred ----EEEEEeCCCCEEEEECCCCc--------EEEEEC-CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccc
Confidence 89999999999999986433 444444 367899999998 578999999999999999998765432
Q ss_pred ecCCCCC--------------CccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEE
Q 019405 199 TAKPPPK--------------NSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAV 264 (341)
Q Consensus 199 ~~~~~~~--------------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~ 264 (341)
....... ......|...+.++. ++++++++++.|+.|++||+++++ ++..+.+|...|.++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~l~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~v~~~ 316 (464)
T 3v7d_B 242 DHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS----GHGNIVVSGSYDNTLIVWDVAQMK-CLYILSGHTDRIYST 316 (464)
T ss_dssp -----CCSSEEESCGGGCTTEEEEECCCSSCEEEEE----EETTEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEE
T ss_pred cccccCCcceEeeccCCCeEEEEEccCccceEEEEc----CCCCEEEEEeCCCeEEEEECCCCc-EEEEecCCCCCEEEE
Confidence 2111100 000112334565553 478899999999999999999866 488888999999999
Q ss_pred EEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeee
Q 019405 265 AEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSA 338 (341)
Q Consensus 265 ~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 338 (341)
+|+|++++|++|+.||.|++||+++++++..+.+| ...|.+++|+ +.+|++++.||.|++||+.+++....
T Consensus 317 ~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h-~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~ 387 (464)
T 3v7d_B 317 IYDHERKRCISASMDTTIRIWDLENGELMYTLQGH-TALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFS 387 (464)
T ss_dssp EEETTTTEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC-CCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeee
Confidence 99999999999999999999999999999999998 8999999997 57999999999999999998876554
No 96
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=8.4e-33 Score=233.05 Aligned_cols=251 Identities=12% Similarity=0.059 Sum_probs=203.1
Q ss_pred ccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcc---hheeeccCCCCCCCCCCceeeEeeeecccccccc
Q 019405 45 WGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL---RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSS 121 (341)
Q Consensus 45 ~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (341)
..+|...+.+++|++++. +|++++.||.|+||++.+++. ...+.. +...+.++.+.+....
T Consensus 7 ~~~h~~~v~~~~~s~~~~----~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~---- 70 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKS----LLLITSWDGSLTVYKFDIQAKNVDLLQSLR--------YKHPLLCCNFIDNTDL---- 70 (342)
T ss_dssp SSCCSSCEEEEEEEGGGT----EEEEEETTSEEEEEEEETTTTEEEEEEEEE--------CSSCEEEEEEEESSSE----
T ss_pred ccCCCCcEEEEEEcCCCC----EEEEEcCCCeEEEEEeCCCCccccceeeee--------cCCceEEEEECCCCCc----
Confidence 456899999999999776 899999999999999987761 222223 4577888887654220
Q ss_pred ccceeEEEcccceeEEEEe-eecccccccCCceEEEEEe-ecCCceEEEEecCCCCEEEEeeCCCeEEEEECCC------
Q 019405 122 RSRTLLTCTTKGKASMRSI-EVTKVSAESSCSTVKSWNV-CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDK------ 193 (341)
Q Consensus 122 ~~~~l~~~~~~g~~~i~~~-~~~~~~~~~~~~~v~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~------ 193 (341)
.+++++.+|.+.+|++ .... ...+.. .+...|.+++|+| ++++++++.|+.|++||+++
T Consensus 71 ---~l~~~~~dg~i~~wd~~~~~~---------~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~ 137 (342)
T 1yfq_A 71 ---QIYVGTVQGEILKVDLIGSPS---------FQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVI 137 (342)
T ss_dssp ---EEEEEETTSCEEEECSSSSSS---------EEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCE
T ss_pred ---EEEEEcCCCeEEEEEeccCCc---------eEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccc
Confidence 5889999999999998 5432 222221 1678899999999 99999999999999999986
Q ss_pred ---CceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCC-CCce-eEEEEecCCCeEEEEEcC
Q 019405 194 ---CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA-QRRP-VMSFDFRETPIKAVAEEP 268 (341)
Q Consensus 194 ---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~-~~~~~~~~~~v~~~~~~~ 268 (341)
++.+..+. +...+.+++| ++++ +++++.|+.|++||+++ .... ......|...+.+++|+|
T Consensus 138 ~~~~~~~~~~~----------~~~~v~~~~~--~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~ 203 (342)
T 1yfq_A 138 AVKNLNSNNTK----------VKNKIFTMDT--NSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLP 203 (342)
T ss_dssp EEEESCSSSSS----------SCCCEEEEEE--CSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECS
T ss_pred cccCCeeeEEe----------eCCceEEEEe--cCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECC
Confidence 55444433 3366999999 6665 99999999999999998 5542 334445788999999999
Q ss_pred -CCceEEEEeCCCCEEEEECCCC------eEEeEEeccccC---------ceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405 269 -DSFNIYIGNGSGDLASVDIRTG------KLLGCFIGKCSG---------SIRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (341)
Q Consensus 269 -~~~~l~~g~~dg~i~iwd~~~~------~~~~~~~~~~~~---------~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 332 (341)
+++++++++.||.|++|+++.. +.+..+..| .. .|.+++|+|++++|++++.||.|++||+.+
T Consensus 204 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 282 (342)
T 1yfq_A 204 KEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH-RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT 282 (342)
T ss_dssp GGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECC-CCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTT
T ss_pred CCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecc-cccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCcc
Confidence 9999999999999999999877 777888877 44 999999999999999999999999999999
Q ss_pred Cceeeee
Q 019405 333 RQLLSAV 339 (341)
Q Consensus 333 ~~~~~~~ 339 (341)
++++.++
T Consensus 283 ~~~~~~~ 289 (342)
T 1yfq_A 283 RKKIKNF 289 (342)
T ss_dssp TEEEEEC
T ss_pred HhHhhhh
Confidence 9988765
No 97
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.8e-33 Score=237.24 Aligned_cols=260 Identities=13% Similarity=0.124 Sum_probs=202.6
Q ss_pred eccCCCCCceeEEEeccCCCCCceEEEEcc---CCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccc
Q 019405 44 RWGDPHSSNCVLAASIDDSQNDPLLAVARK---NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS 120 (341)
Q Consensus 44 ~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (341)
.+.+|...+.+++|++++. .++++|+. ||.|+|||+.+++....... .+...+.++.+.+...
T Consensus 13 ~~~~h~~~v~~~~~~p~~~---~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~---- 78 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSA---KFVTMGNFARGTGVIQLYEIQHGDLKLLREI-------EKAKPIKCGTFGATSL---- 78 (357)
T ss_dssp EEEECSSCEEEEEECTTSS---EEEEEEC--CCCEEEEEEEECSSSEEEEEEE-------EESSCEEEEECTTCCT----
T ss_pred hccCCCCceEEEEEcCCCc---eEEEecCccCCCcEEEEEeCCCCcccceeee-------cccCcEEEEEEcCCCC----
Confidence 4566999999999998775 24566776 99999999998876544432 2447788888876630
Q ss_pred cccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEE------ecCCCCEEEEeeCCCeEEEEECCCC
Q 019405 121 SRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSK------VDISEKFSLFGGKGVEVNVWDLDKC 194 (341)
Q Consensus 121 ~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~------~~~~~~~l~~~~~d~~v~i~d~~~~ 194 (341)
....+++++.||.+.+|++.... ..+..+. .+...|.+++ |+|++++|++++.|+.|++||++++
T Consensus 79 -~~~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~-~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~ 149 (357)
T 3i2n_A 79 -QQRYLATGDFGGNLHIWNLEAPE-------MPVYSVK-GHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQK 149 (357)
T ss_dssp -TTCCEEEEETTSCEEEECTTSCS-------SCSEEEC-CCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSC
T ss_pred -CCceEEEecCCCeEEEEeCCCCC-------ccEEEEE-ecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCC
Confidence 01189999999999999986433 1334444 4677899995 5789999999999999999999987
Q ss_pred c-eeeecCCCCCCccCccCCeeeeEEEEEe--cCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcC---
Q 019405 195 E-KIWTAKPPPKNSLGIFTPTWFTSAAFLS--IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEP--- 268 (341)
Q Consensus 195 ~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~--- 268 (341)
+ ....+..+... ....+.+++|.+ ++++++|++++.|+.|++||+++++. .....|...|.+++|+|
T Consensus 150 ~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~v~~~~~~~~~~ 222 (357)
T 3i2n_A 150 DDPVANMEPVQGE-----NKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL--RWETNIKNGVCSLEFDRKDI 222 (357)
T ss_dssp SSCSEEECCCTTS-----CCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEE--EEEEECSSCEEEEEESCSSS
T ss_pred CCcceeccccCCC-----CCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCce--eeecCCCCceEEEEcCCCCC
Confidence 6 56666554322 123588888411 68999999999999999999998653 44566889999999999
Q ss_pred CCceEEEEeCCCCEEEEECCCCeEEeEEe-----ccccCceeEEEecCCCC-EEEEEeCCCcEEEEEcCCCc
Q 019405 269 DSFNIYIGNGSGDLASVDIRTGKLLGCFI-----GKCSGSIRSIARHPTLP-IIASCGLDSYLRFWDIKTRQ 334 (341)
Q Consensus 269 ~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~ 334 (341)
++.+|++++.||.|++||+++++.+..+. +| ...|++++|+|+++ +|++++.||.|++||++++.
T Consensus 223 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 293 (357)
T 3i2n_A 223 SMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAH-KSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPI 293 (357)
T ss_dssp SCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECC-SSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCS
T ss_pred CCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCC-cCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCc
Confidence 89999999999999999998877655554 77 89999999999998 89999999999999998653
No 98
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=5.3e-32 Score=245.73 Aligned_cols=275 Identities=13% Similarity=0.057 Sum_probs=223.5
Q ss_pred CCCCeEEEEEecCccCccceeeeccCCCCC-ceeEEEec--cCCCCCceEEEEccCCeEEEeeCCCC--------cchhe
Q 019405 22 SLGLIKVIEARGEHGGVPKVVERWGDPHSS-NCVLAASI--DDSQNDPLLAVARKNGLTDILNPLNG--------DLRVA 90 (341)
Q Consensus 22 ~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~s~--~~~~~~~~l~~~~~dg~i~iw~~~~~--------~~~~~ 90 (341)
.+|.+.+|++.+.. ...+....+.+|... +.+++|++ ++. +|++|+.||.|+|||+.++ +....
T Consensus 37 ~~~~v~v~~~~~~~-~~~~~~~~~~~h~~~~v~~~~~sp~~~~~----~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~ 111 (615)
T 1pgu_A 37 CGKSAFVRCLDDGD-SKVPPVVQFTGHGSSVVTTVKFSPIKGSQ----YLCSGDESGKVIVWGWTFDKESNSVEVNVKSE 111 (615)
T ss_dssp ETTEEEEEECCSSC-CSSCSEEEECTTTTSCEEEEEECSSTTCC----EEEEEETTSEEEEEEEEEEGGGTEEEEEEEEE
T ss_pred cCCeEEEEECCCCC-CccccceEEecCCCceEEEEEECcCCCCC----EEEEecCCCEEEEEeCCCCcccccccccccch
Confidence 36778899887531 111345578889999 99999998 665 8999999999999999755 44444
Q ss_pred eeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEccc----ceeEEEEeeecccccccCCceEEEEEeecCCceE
Q 019405 91 ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK----GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIA 166 (341)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~ 166 (341)
+.. +...+.++.+.+... .+++++.+ +.+.+|+.. ..+..+. .+...|.
T Consensus 112 ~~~--------~~~~v~~~~~s~~~~--------~l~~~~~~~~~~~~v~~~d~~----------~~~~~~~-~~~~~v~ 164 (615)
T 1pgu_A 112 FQV--------LAGPISDISWDFEGR--------RLCVVGEGRDNFGVFISWDSG----------NSLGEVS-GHSQRIN 164 (615)
T ss_dssp EEC--------CSSCEEEEEECTTSS--------EEEEEECCSSCSEEEEETTTC----------CEEEECC-SCSSCEE
T ss_pred hhc--------ccccEEEEEEeCCCC--------EEEEeccCCCCccEEEEEECC----------Ccceeee-cCCccEE
Confidence 443 457788888876655 88888877 788888721 1334443 4678899
Q ss_pred EEEecCCCC-EEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCC-CCEEEEEeCCCeEEEEEc
Q 019405 167 FSKVDISEK-FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD-HRKFVAGTNDHQVRLYDT 244 (341)
Q Consensus 167 ~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~d~~i~iwd~ 244 (341)
+++|+|+++ .+++++.|+.|++||+.+++....+..+... ...|.+++| +|+ +++|++++.|+.|++||+
T Consensus 165 ~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~------~~~v~~~~~--~~~~~~~l~~~~~dg~i~vwd~ 236 (615)
T 1pgu_A 165 ACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQ------GSFVRDVEF--SPDSGEFVITVGSDRKISCFDG 236 (615)
T ss_dssp EEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCT------TCCEEEEEE--CSTTCCEEEEEETTCCEEEEET
T ss_pred EEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCC------CceEEEEEE--CCCCCCEEEEEeCCCeEEEEEC
Confidence 999999998 8999999999999999999988888765420 016999999 889 999999999999999999
Q ss_pred CCCCceeEEE-E---ecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEecc---ccCceeEEEecCCCCEEE
Q 019405 245 SAQRRPVMSF-D---FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK---CSGSIRSIARHPTLPIIA 317 (341)
Q Consensus 245 ~~~~~~~~~~-~---~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~ 317 (341)
++++. +..+ . .|...|.+++|+ ++.+|++++.|+.|++||+++++.+..+..+ ....+.++.|. ++.+++
T Consensus 237 ~~~~~-~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ 313 (615)
T 1pgu_A 237 KSGEF-LKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRII 313 (615)
T ss_dssp TTCCE-EEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEE
T ss_pred CCCCE-eEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEE
Confidence 98764 7777 5 799999999999 9999999999999999999999999888865 23678888885 889999
Q ss_pred EEeCCCcEEEEEcCCCceeeee
Q 019405 318 SCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 318 s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
+++.|+.|++||+.+++++..+
T Consensus 314 ~~~~~g~i~~~d~~~~~~~~~~ 335 (615)
T 1pgu_A 314 SLSLDGTLNFYELGHDEVLKTI 335 (615)
T ss_dssp EEETTSCEEEEETTEEEEEEEE
T ss_pred EEECCCCEEEEECCCCcEEEEE
Confidence 9999999999999998877665
No 99
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=6.9e-31 Score=225.55 Aligned_cols=272 Identities=13% Similarity=0.093 Sum_probs=217.0
Q ss_pred ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceE-EEEccCCeEEEeeCCCCcchheeec
Q 019405 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLL-AVARKNGLTDILNPLNGDLRVAISN 93 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~ 93 (341)
..+++++.+|.|++|++... ++...+..+. .+.+++|++++. +| ++++.|+.|++||+.+++.+..+..
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~-----~~~~~~~~~~-~~~~~~~s~dg~----~l~~~~~~d~~i~v~d~~~~~~~~~~~~ 72 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSN-----KVTATIPVGS-NPMGAVISPDGT----KVYVANAHSNDVSIIDTATNNVIATVPA 72 (391)
T ss_dssp EEEEEETTTTEEEEEETTTT-----EEEEEEECSS-SEEEEEECTTSS----EEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred EEEEEcCCCCEEEEEECCCC-----eEEEEeecCC-CcceEEECCCCC----EEEEECCCCCeEEEEECCCCeEEEEEEC
Confidence 34788899999999998875 5666665554 478888887766 55 6777999999999999988877765
Q ss_pred cCCCCCCCCCCceeeEeeeecccccccccccee-EEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecC
Q 019405 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL-LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI 172 (341)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~ 172 (341)
+ ..+.++.+.+... .+ +++..++.+.+|++.... .+.... ....+.+++|+|
T Consensus 73 ~---------~~v~~~~~spdg~--------~l~~~~~~~~~v~v~d~~~~~--------~~~~~~--~~~~~~~~~~s~ 125 (391)
T 1l0q_A 73 G---------SSPQGVAVSPDGK--------QVYVTNMASSTLSVIDTTSNT--------VAGTVK--TGKSPLGLALSP 125 (391)
T ss_dssp S---------SSEEEEEECTTSS--------EEEEEETTTTEEEEEETTTTE--------EEEEEE--CSSSEEEEEECT
T ss_pred C---------CCccceEECCCCC--------EEEEEECCCCEEEEEECCCCe--------EEEEEe--CCCCcceEEECC
Confidence 3 4677777766554 45 566677999999986433 333333 456789999999
Q ss_pred CCCEE-EEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEE-EEEeCCCeEEEEEcCCCCce
Q 019405 173 SEKFS-LFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF-VAGTNDHQVRLYDTSAQRRP 250 (341)
Q Consensus 173 ~~~~l-~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~ 250 (341)
+++.+ ++++.++.|++||+.+++....+..+ ..+.+++| +|+++++ ++++.++.|++||+++++.
T Consensus 126 dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~----------~~~~~~~~--~~dg~~l~~~~~~~~~v~~~d~~~~~~- 192 (391)
T 1l0q_A 126 DGKKLYVTNNGDKTVSVINTVTKAVINTVSVG----------RSPKGIAV--TPDGTKVYVANFDSMSISVIDTVTNSV- 192 (391)
T ss_dssp TSSEEEEEETTTTEEEEEETTTTEEEEEEECC----------SSEEEEEE--CTTSSEEEEEETTTTEEEEEETTTTEE-
T ss_pred CCCEEEEEeCCCCEEEEEECCCCcEEEEEecC----------CCcceEEE--CCCCCEEEEEeCCCCEEEEEECCCCeE-
Confidence 99977 67888999999999999888776653 23688899 8899877 5777899999999998653
Q ss_pred eEEEEecCCCeEEEEEcCCCceEEEEe---CCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEE-EEEeCCCcEE
Q 019405 251 VMSFDFRETPIKAVAEEPDSFNIYIGN---GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPII-ASCGLDSYLR 326 (341)
Q Consensus 251 ~~~~~~~~~~v~~~~~~~~~~~l~~g~---~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~s~~~dg~v~ 326 (341)
+..+. +...+.+++|+|++++|++++ .++.|++||+++++.+..+..+ ..+.+++|+|++++| ++++.|+.|+
T Consensus 193 ~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~s~~~d~~v~ 269 (391)
T 1l0q_A 193 IDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG--PDPAGIAVTPDGKKVYVALSFXNTVS 269 (391)
T ss_dssp EEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC--SSEEEEEECTTSSEEEEEETTTTEEE
T ss_pred EEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecC--CCccEEEEccCCCEEEEEcCCCCEEE
Confidence 55554 556889999999999999888 6899999999999999888876 357899999999977 6778899999
Q ss_pred EEEcCCCceeeee
Q 019405 327 FWDIKTRQLLSAV 339 (341)
Q Consensus 327 iwd~~~~~~~~~~ 339 (341)
+||+.+++++..+
T Consensus 270 v~d~~~~~~~~~~ 282 (391)
T 1l0q_A 270 VIDTATNTITATM 282 (391)
T ss_dssp EEETTTTEEEEEE
T ss_pred EEECCCCcEEEEE
Confidence 9999999888765
No 100
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.3e-31 Score=221.36 Aligned_cols=238 Identities=13% Similarity=0.128 Sum_probs=183.6
Q ss_pred CceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcc--hhee
Q 019405 14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL--RVAI 91 (341)
Q Consensus 14 ~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--~~~~ 91 (341)
.-.+++++.||.|++|++... .+ +++.++.+|..+|.+++|+++.. +++|++|+.|++|+|||+++++. +..+
T Consensus 21 g~~las~s~D~~v~iw~~~~~-~~--~~~~~l~gH~~~V~~v~~s~~~~--g~~l~s~s~D~~v~iWd~~~~~~~~~~~~ 95 (297)
T 2pm7_B 21 GKRMATCSSDKTIKIFEVEGE-TH--KLIDTLTGHEGPVWRVDWAHPKF--GTILASCSYDGKVMIWKEENGRWSQIAVH 95 (297)
T ss_dssp SSEEEEEETTSCEEEEEBCSS-CB--CCCEEECCCSSCEEEEEECCGGG--CSEEEEEETTTEEEEEEBSSSCBCCCEEE
T ss_pred CCEEEEEeCCCEEEEEecCCC-Cc--EEEEEEccccCCeEEEEecCCCc--CCEEEEEcCCCEEEEEEcCCCceEEEEEe
Confidence 346889999999999998753 12 45567889999999999986421 34899999999999999987753 3333
Q ss_pred eccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEec
Q 019405 92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD 171 (341)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~ 171 (341)
.. +...+.++.+.+.... ..+++++.|+.+++|++...... ...... .|...|.+++|+
T Consensus 96 ~~--------h~~~v~~v~~~p~~~g------~~l~s~s~d~~v~~wd~~~~~~~------~~~~~~-~h~~~v~~~~~~ 154 (297)
T 2pm7_B 96 AV--------HSASVNSVQWAPHEYG------PMLLVASSDGKVSVVEFKENGTT------SPIIID-AHAIGVNSASWA 154 (297)
T ss_dssp CC--------CSSCEEEEEECCGGGC------SEEEEEETTSEEEEEEBCSSSCB------CCEEEE-CCSSCEEEEEEC
T ss_pred ec--------CCCceeEEEeCcCCCC------cEEEEEECCCcEEEEEecCCCce------eeeeee-cccCccceEeec
Confidence 33 4577888888765311 18999999999999998643210 122222 467789999999
Q ss_pred CC-------------CCEEEEeeCCCeEEEEECCCCc----eeeecCCCCCCccCccCCeeeeEEEEEecCC---CCEEE
Q 019405 172 IS-------------EKFSLFGGKGVEVNVWDLDKCE----KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD---HRKFV 231 (341)
Q Consensus 172 ~~-------------~~~l~~~~~d~~v~i~d~~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~l~ 231 (341)
|+ +++|++|+.|++|++||+++++ ....+..| ..+|.+++| +|+ +.+|+
T Consensus 155 p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H---------~~~V~~v~~--sp~~~~~~~la 223 (297)
T 2pm7_B 155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH---------SDWVRDVAW--SPTVLLRSYMA 223 (297)
T ss_dssp CCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC---------SSCEEEEEE--CCCCSSSEEEE
T ss_pred CCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCC---------CCceEEEEE--CCCCCCceEEE
Confidence 96 5799999999999999998765 34455554 367999999 777 48999
Q ss_pred EEeCCCeEEEEEcCCCCce--eEEE--EecCCCeEEEEEcCCCceEEEEeCCCCEEEEECC
Q 019405 232 AGTNDHQVRLYDTSAQRRP--VMSF--DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR 288 (341)
Q Consensus 232 ~~~~d~~i~iwd~~~~~~~--~~~~--~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~ 288 (341)
+++.|++|++||++....+ ...+ ..|...|.+++|+|++++|++++.|+.|++|+..
T Consensus 224 s~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 224 SVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred EEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 9999999999999874321 1222 3577889999999999999999999999999976
No 101
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.8e-31 Score=229.94 Aligned_cols=249 Identities=14% Similarity=0.120 Sum_probs=202.1
Q ss_pred ccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccc
Q 019405 45 WGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSR 124 (341)
Q Consensus 45 ~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (341)
..++...+.+.+++++.. .+++++.|+.|++||+.+++....+.. .+...+.++.+.+...
T Consensus 87 ~~~~~~~~~~~~~~~s~~----~l~~~~~d~~v~lw~~~~~~~~~~~~~-------~~~~~v~~v~~s~~~~-------- 147 (401)
T 4aez_A 87 APGIIDDYYLNLLDWSNL----NVVAVALERNVYVWNADSGSVSALAET-------DESTYVASVKWSHDGS-------- 147 (401)
T ss_dssp CTTCCCCTTCBCEEECTT----SEEEEEETTEEEEEETTTCCEEEEEEC-------CTTCCEEEEEECTTSS--------
T ss_pred CCCCcCCceEEEEeecCC----CEEEEECCCeEEEeeCCCCcEeEeeec-------CCCCCEEEEEECCCCC--------
Confidence 345555555555555443 588888999999999999988776665 2557788888877655
Q ss_pred eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECC-CCceeeecCCC
Q 019405 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLD-KCEKIWTAKPP 203 (341)
Q Consensus 125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~-~~~~~~~~~~~ 203 (341)
.+++++.||.+.+|++.... .+..+. .+...|.+++| +++++++++.|+.|++||++ .......+..+
T Consensus 148 ~l~~~~~dg~i~iwd~~~~~--------~~~~~~-~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 216 (401)
T 4aez_A 148 FLSVGLGNGLVDIYDVESQT--------KLRTMA-GHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGH 216 (401)
T ss_dssp EEEEEETTSCEEEEETTTCC--------EEEEEC-CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECC
T ss_pred EEEEECCCCeEEEEECcCCe--------EEEEec-CCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCC
Confidence 89999999999999986433 445554 46788999999 46799999999999999998 45555556554
Q ss_pred CCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCC-ceEEEEe--CCC
Q 019405 204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS-FNIYIGN--GSG 280 (341)
Q Consensus 204 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~g~--~dg 280 (341)
. ..|.+++| +|++++|++++.|+.|++||+++++ ++..+..|...|.+++|+|++ .++++++ .|+
T Consensus 217 ~---------~~v~~~~~--~~~~~~l~s~~~d~~v~iwd~~~~~-~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~ 284 (401)
T 4aez_A 217 S---------SEVCGLAW--RSDGLQLASGGNDNVVQIWDARSSI-PKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDK 284 (401)
T ss_dssp S---------SCEEEEEE--CTTSSEEEEEETTSCEEEEETTCSS-EEEEECCCSSCCCEEEECTTSTTEEEEECCTTTC
T ss_pred C---------CCeeEEEE--cCCCCEEEEEeCCCeEEEccCCCCC-ccEEecCCcceEEEEEECCCCCCEEEEecCCCCC
Confidence 3 56999999 8899999999999999999999865 477888899999999999977 4555554 799
Q ss_pred CEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEE--eCCCcEEEEEcCCCceee
Q 019405 281 DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASC--GLDSYLRFWDIKTRQLLS 337 (341)
Q Consensus 281 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~--~~dg~v~iwd~~~~~~~~ 337 (341)
.|++||+++++++..+.. ...|.+++|+|++++|+++ +.||.|++||+.+++...
T Consensus 285 ~i~i~d~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~ 341 (401)
T 4aez_A 285 QIHFWNAATGARVNTVDA--GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTK 341 (401)
T ss_dssp EEEEEETTTCCEEEEEEC--SSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEE
T ss_pred EEEEEECCCCCEEEEEeC--CCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCcccee
Confidence 999999999999988864 5789999999999999985 489999999999876544
No 102
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-32 Score=231.47 Aligned_cols=264 Identities=9% Similarity=0.007 Sum_probs=195.7
Q ss_pred CceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCC---------
Q 019405 14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN--------- 84 (341)
Q Consensus 14 ~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~--------- 84 (341)
...+++++.||.|++|++.+. +.+..+. ...+..+.+. |. +++++.|++|++|+...
T Consensus 48 ~~~l~sg~~Dg~v~iwd~~~~-----~~~~~~~--~~~v~~~~~~----~~---~~s~s~D~~i~~w~~~~~~~~~~~~~ 113 (343)
T 3lrv_A 48 KWVCMCRCEDGALHFTQLKDS-----KTITTIT--TPNPRTGGEH----PA---IISRGPCNRLLLLYPGNQITILDSKT 113 (343)
T ss_dssp EEEEEEEEETTEEEEEEESSS-----SCEEEEE--EECCCTTCCC----CS---EEEECSTTEEEEEETTTEEEEEETTT
T ss_pred CCEEEEECCCCcEEEEECCCC-----cEEEEEe--cCCceeeeeC----Cc---eEEecCCCeEEEEEccCceEEeecCC
Confidence 456899999999999999876 4444443 3445544443 32 99999999999997753
Q ss_pred CcchheeeccCCCCCCCCCCceeeEeeee--ccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecC
Q 019405 85 GDLRVAISNAGDSGAQPEDDGIVGLHLFK--RQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCAS 162 (341)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~ 162 (341)
++.+..+.. .+.+++.++.+.+ ... .+++++.||.+++|+++... .+......+.
T Consensus 114 ~~~~~~~~~-------~~~~~v~~~~~~~~~~~~--------~l~s~s~dg~i~~wd~~~~~--------~~~~~~~~~~ 170 (343)
T 3lrv_A 114 NKVLREIEV-------DSANEIIYMYGHNEVNTE--------YFIWADNRGTIGFQSYEDDS--------QYIVHSAKSD 170 (343)
T ss_dssp CCEEEEEEC-------CCSSCEEEEECCC---CC--------EEEEEETTCCEEEEESSSSC--------EEEEECCCSS
T ss_pred cceeEEeec-------CCCCCEEEEEcCCCCCCC--------EEEEEeCCCcEEEEECCCCc--------EEEEEecCCC
Confidence 222223222 3456788888877 555 89999999999999986443 4455545556
Q ss_pred CceEEEEecCCCCEEEEeeCCCeEEEEECCCCcee-eecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEE
Q 019405 163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI-WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL 241 (341)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~i 241 (341)
..+.+++|+|++.+|++|+.|+.|++||+++++.. ..+.. .|...|.+++| +|++.+|++++ |+.|++
T Consensus 171 ~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~--------~h~~~v~~l~f--s~~g~~l~s~~-~~~v~i 239 (343)
T 3lrv_A 171 VEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPV--------DEEAKIKEVKF--ADNGYWMVVEC-DQTVVC 239 (343)
T ss_dssp CCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCC--------CTTSCEEEEEE--CTTSSEEEEEE-SSBEEE
T ss_pred CceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEec--------cCCCCEEEEEE--eCCCCEEEEEe-CCeEEE
Confidence 67999999999999999999999999999998876 55655 12367999999 89999999999 559999
Q ss_pred EEcCCCCceeEEEE---ecCCCe--EEEEEcCCCceEEEEeC-CCCEEEEECCCCeEEeEEeccccCceeEEEecC---C
Q 019405 242 YDTSAQRRPVMSFD---FRETPI--KAVAEEPDSFNIYIGNG-SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHP---T 312 (341)
Q Consensus 242 wd~~~~~~~~~~~~---~~~~~v--~~~~~~~~~~~l~~g~~-dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~---~ 312 (341)
||+++.+. +..+. .|...+ .+++|+|++++|++++. |+.|++|++.+....... .++..++|.+ +
T Consensus 240 wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 313 (343)
T 3lrv_A 240 FDLRKDVG-TLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK-----DEESALCLQSDTAD 313 (343)
T ss_dssp EETTSSTT-CBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE-----EEEEECCC----CC
T ss_pred EEcCCCCc-ceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe-----cCceeEecCccccc
Confidence 99998654 33222 233334 36999999999999998 999999999765433222 3577888988 8
Q ss_pred CCEEEEEeCCCcEEEEEcC
Q 019405 313 LPIIASCGLDSYLRFWDIK 331 (341)
Q Consensus 313 ~~~l~s~~~dg~v~iwd~~ 331 (341)
...+++++.|+.++++-..
T Consensus 314 ~~~l~~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 314 FTDMDVVCGDGGIAAILKT 332 (343)
T ss_dssp CCEEEEEEETTEEEEEEEC
T ss_pred cceeEEEecCCceEEEEec
Confidence 8899999999999888544
No 103
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=2.8e-31 Score=231.26 Aligned_cols=234 Identities=14% Similarity=0.239 Sum_probs=195.8
Q ss_pred CCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccccccccee
Q 019405 47 DPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL 126 (341)
Q Consensus 47 ~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 126 (341)
+|...+.++++ + +++|++|+.||.|++||+.+++....+.. |...+.++.+ ... .+
T Consensus 131 ~~~~~v~~~~~--d----~~~l~~g~~dg~i~iwd~~~~~~~~~~~~--------h~~~v~~l~~--~~~--------~l 186 (435)
T 1p22_A 131 ETSKGVYCLQY--D----DQKIVSGLRDNTIKIWDKNTLECKRILTG--------HTGSVLCLQY--DER--------VI 186 (435)
T ss_dssp SSCCCEEEEEC--C----SSEEEEEESSSCEEEEESSSCCEEEEECC--------CSSCEEEEEC--CSS--------EE
T ss_pred CCCCcEEEEEE--C----CCEEEEEeCCCeEEEEeCCCCeEEEEEcC--------CCCcEEEEEE--CCC--------EE
Confidence 45566666654 3 45899999999999999999988887776 4577888877 233 89
Q ss_pred EEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCcee---eecCCC
Q 019405 127 LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI---WTAKPP 203 (341)
Q Consensus 127 ~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~---~~~~~~ 203 (341)
++++.||.+.+|++.... .+..+. .+...|.+++++ ++.+++++.|+.|++||+++++.. ..+..+
T Consensus 187 ~sg~~dg~i~vwd~~~~~--------~~~~~~-~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~ 255 (435)
T 1p22_A 187 ITGSSDSTVRVWDVNTGE--------MLNTLI-HHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGH 255 (435)
T ss_dssp EEEETTSCEEEEESSSCC--------EEEEEC-CCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCC
T ss_pred EEEcCCCeEEEEECCCCc--------EEEEEc-CCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCC
Confidence 999999999999986443 444444 467789999996 469999999999999999887654 334433
Q ss_pred CCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEE
Q 019405 204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLA 283 (341)
Q Consensus 204 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~ 283 (341)
...|.+++| +++++++++.|+.|++||+++++. +..+..|...|.++.++ +.++++|+.||.|+
T Consensus 256 ---------~~~v~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~ 319 (435)
T 1p22_A 256 ---------RAAVNVVDF----DDKYIVSASGDRTIKVWNTSTCEF-VRTLNGHKRGIACLQYR--DRLVVSGSSDNTIR 319 (435)
T ss_dssp ---------SSCEEEEEE----ETTEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEEE--TTEEEEEETTSCEE
T ss_pred ---------CCcEEEEEe----CCCEEEEEeCCCeEEEEECCcCcE-EEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEE
Confidence 356888888 678999999999999999998764 88899999999999994 56999999999999
Q ss_pred EEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCc
Q 019405 284 SVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ 334 (341)
Q Consensus 284 iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 334 (341)
+||+++++++..+.+| ...|.+++| ++.+|++++.||.|++||+.+++
T Consensus 320 iwd~~~~~~~~~~~~h-~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~ 367 (435)
T 1p22_A 320 LWDIECGACLRVLEGH-EELVRCIRF--DNKRIVSGAYDGKIKVWDLVAAL 367 (435)
T ss_dssp EEETTTCCEEEEECCC-SSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHT
T ss_pred EEECCCCCEEEEEeCC-cCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCC
Confidence 9999999999999998 899999999 78899999999999999998766
No 104
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.2e-32 Score=232.37 Aligned_cols=266 Identities=8% Similarity=-0.006 Sum_probs=185.3
Q ss_pred CCCceeEEEeccCCCCCceEEEEccC-------CeEEEeeCCCCcch--heeeccCCCCCCCCCCceeeEeeeecccc-c
Q 019405 49 HSSNCVLAASIDDSQNDPLLAVARKN-------GLTDILNPLNGDLR--VAISNAGDSGAQPEDDGIVGLHLFKRQRE-E 118 (341)
Q Consensus 49 ~~~~~~~~~s~~~~~~~~~l~~~~~d-------g~i~iw~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 118 (341)
.-+|++++|++++. +|++|+.+ ++|++|++..+... ..+........+.+++.+.++.+....-- .
T Consensus 14 g~PV~sv~fs~dg~----~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g 89 (365)
T 4h5i_A 14 GYPAYGAKFLNNDT----LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVG 89 (365)
T ss_dssp SSCEEEEEEEETTE----EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEE
T ss_pred CCCEEEEEEeCCCc----EEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEE
Confidence 35799999998776 88888643 36999998765432 22222211222345566666654221000 0
Q ss_pred cccccceeEEEcccceeEEEEeeecccccccCCceEEEEEee-------cCCceEEEEecCCCCEEEE--eeCCCeEEEE
Q 019405 119 SSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC-------ASGTIAFSKVDISEKFSLF--GGKGVEVNVW 189 (341)
Q Consensus 119 ~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~-------~~~~i~~~~~~~~~~~l~~--~~~d~~v~i~ 189 (341)
.+.....+++++.|+.+++|++.... +.+...... ....+.+++|+|||+++++ ++.|++|++|
T Consensus 90 ~~~~~~~l~s~~~d~~~r~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iw 162 (365)
T 4h5i_A 90 CNENSTKITQGKGNKHLRKFKYDKVN-------DQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRII 162 (365)
T ss_dssp CCCCHHHHHHTSCCCCEEEEEEETTT-------TEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEE
T ss_pred ECCCccEEEEecCCCcEEEEEecCCC-------ceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEe
Confidence 00001133444556777787765432 122222111 1234789999999999765 4578999999
Q ss_pred ECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCcee-EEEEecCCCeEEEEEcC
Q 019405 190 DLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPV-MSFDFRETPIKAVAEEP 268 (341)
Q Consensus 190 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~v~~~~~~~ 268 (341)
|+++++.+..+..+ ..|.+++| +|+++++++++.+ .+++|+..+++... .....|...|.+++|+|
T Consensus 163 d~~~~~~~~~~~~~----------~~V~~v~f--spdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fsp 229 (365)
T 4h5i_A 163 DPSDLTEKFEIETR----------GEVKDLHF--STDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIA 229 (365)
T ss_dssp ETTTTEEEEEEECS----------SCCCEEEE--CTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEE
T ss_pred ECCCCcEEEEeCCC----------CceEEEEE--ccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcC
Confidence 99999988877532 45999999 9999999999855 56677766655422 23345788899999999
Q ss_pred CCceEEEEeCCC----CEEEEECCCCeE----EeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 269 DSFNIYIGNGSG----DLASVDIRTGKL----LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 269 ~~~~l~~g~~dg----~i~iwd~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
+++++++++.|+ .+++|++..... ...+.+| ...|++++|+|+|++||+|+.|++|+|||+++++++.++
T Consensus 230 dg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~ 307 (365)
T 4h5i_A 230 DDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNR-FKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIF 307 (365)
T ss_dssp TTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESS-CSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred CCCEEEEEecCCcceeEEeecccccceecceeeeeecCC-CCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEe
Confidence 999999999887 588899877653 3456676 889999999999999999999999999999999998875
No 105
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-31 Score=231.84 Aligned_cols=250 Identities=16% Similarity=0.132 Sum_probs=196.5
Q ss_pred CCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCc---chheeeccCC------------------------------
Q 019405 50 SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD---LRVAISNAGD------------------------------ 96 (341)
Q Consensus 50 ~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~~~~~------------------------------ 96 (341)
.++.+++|++++. +|+ ++.++.|++||+.+++ .+..+..+..
T Consensus 5 ~p~~~v~~s~dg~----~l~-~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (450)
T 2vdu_B 5 HPLQNLLTSRDGS----LVF-AIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSN 79 (450)
T ss_dssp CCCCEEEECSSSS----EEE-EEETTEEEEEEEETTTEEEEEEEEECCC-------------------------------
T ss_pred ccEEEEEecCCCC----EEE-EEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccC
Confidence 4678888888776 444 4468899999999988 5555543221
Q ss_pred ----------------CCCCCCCCceeeEeeeecccccccccccee-EEEcccceeEEEEee--ecccccccCCceEEEE
Q 019405 97 ----------------SGAQPEDDGIVGLHLFKRQREESSSRSRTL-LTCTTKGKASMRSIE--VTKVSAESSCSTVKSW 157 (341)
Q Consensus 97 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~g~~~i~~~~--~~~~~~~~~~~~v~~~ 157 (341)
....++.+.+.++.+.+... .| ++++.||.+++|++. ... .+..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~--------~l~~~~~~dg~v~iwd~~~~~~~--------~~~~~ 143 (450)
T 2vdu_B 80 KGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDES--------RLIACADSDKSLLVFDVDKTSKN--------VLKLR 143 (450)
T ss_dssp --------------------CCCCCEEEEEECTTSS--------EEEEEEGGGTEEEEEEECSSSSS--------CEEEE
T ss_pred cCccccccCccccCCCCCCCccCCceEEEEEcCCCC--------EEEEEECCCCeEEEEECcCCCCc--------eeeee
Confidence 00012334677887766655 64 889999999999986 322 34444
Q ss_pred Ee-ecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceee----ecCCCCCCccCccCCeeeeEEEEEecCC---CCE
Q 019405 158 NV-CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIW----TAKPPPKNSLGIFTPTWFTSAAFLSIDD---HRK 229 (341)
Q Consensus 158 ~~-~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~ 229 (341)
.. .+...|.+++|+|++++|++++.++.|++|++.+++... .+.. |...|.+++| +|+ +.+
T Consensus 144 ~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~---------h~~~v~~~~~--sp~~~~~~~ 212 (450)
T 2vdu_B 144 KRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILG---------HVSMLTDVHL--IKDSDGHQF 212 (450)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEE---------CSSCEEEEEE--EECTTSCEE
T ss_pred ecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeec---------ccCceEEEEE--cCCCCCCcE
Confidence 32 356789999999999999999999999999998766443 2222 3467999999 777 889
Q ss_pred EEEEeCCCeEEEEEcCCCCceeEE-EEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEecc---------
Q 019405 230 FVAGTNDHQVRLYDTSAQRRPVMS-FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK--------- 299 (341)
Q Consensus 230 l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~--------- 299 (341)
|++++.|+.|++||+++++. +.. +.+|...|.+++|+ ++.+|++++.|+.|++||+++++++..+..+
T Consensus 213 l~s~~~d~~i~vwd~~~~~~-~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 290 (450)
T 2vdu_B 213 IITSDRDEHIKISHYPQCFI-VDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLND 290 (450)
T ss_dssp EEEEETTSCEEEEEESCTTC-EEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCT
T ss_pred EEEEcCCCcEEEEECCCCce-eeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhh
Confidence 99999999999999998765 555 55799999999999 9999999999999999999999998888643
Q ss_pred ---------------ccCceeEEEecCCCCEEEEEe-CCCcEEEEEc--CCC
Q 019405 300 ---------------CSGSIRSIARHPTLPIIASCG-LDSYLRFWDI--KTR 333 (341)
Q Consensus 300 ---------------~~~~i~~~~~~~~~~~l~s~~-~dg~v~iwd~--~~~ 333 (341)
....|.+++|+|++++|++++ .|+.|++|++ .++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~ 342 (450)
T 2vdu_B 291 QHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQK 342 (450)
T ss_dssp TSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSST
T ss_pred cccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCC
Confidence 135689999999999999998 8999999999 555
No 106
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=1.4e-31 Score=226.75 Aligned_cols=243 Identities=12% Similarity=0.045 Sum_probs=178.0
Q ss_pred eeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccc
Q 019405 41 VVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS 120 (341)
Q Consensus 41 ~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (341)
.+..+..|...|.+++|++++. +|++|+.+ .++||+.++++....... ..+..+.+......
T Consensus 11 ~~~~~~~h~~~V~~v~fs~dg~----~la~g~~~-~~~iw~~~~~~~~~~~~~----------~~~~~~~~~~~~~~--- 72 (355)
T 3vu4_A 11 PIVPENHVSNPVTDYEFNQDQS----CLILSTLK-SFEIYNVHPVAHIMSQEM----------RHLSKVRMLHRTNY--- 72 (355)
T ss_dssp --------CCCCCEEEECTTSS----EEEEECSS-EEEEEEETTEEEEEEEEC----------SCCCEEEECTTSSE---
T ss_pred CccccccCCCceEEEEECCCCC----EEEEEcCC-EEEEEecCCcceeeeeec----------CCeEEEEEcCCCCE---
Confidence 4445677999999999998777 78888866 578999987665443322 12333444333331
Q ss_pred cccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCC-ceeee
Q 019405 121 SRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC-EKIWT 199 (341)
Q Consensus 121 ~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~-~~~~~ 199 (341)
.+++++.++.+++|++.... .+..+ .+...|.+++++++. ++++ .++.|++||+.++ +.+..
T Consensus 73 ----~~~~~~~d~~v~iWd~~~~~--------~~~~~--~~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~ 135 (355)
T 3vu4_A 73 ----VAFVTGVKEVVHIWDDVKKQ--------DVSRI--KVDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITD 135 (355)
T ss_dssp ----EEEECSSTTEEEEEETTTTE--------EEEEE--ECSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSC
T ss_pred ----EEEEECCccEEEEEECCCCc--------EEEEE--ECCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEE
Confidence 44678888999999986443 34443 356789999998764 4433 4779999999887 55444
Q ss_pred cCCCCCCccCccCCeeeeEEEEEecCCCCEEEE--EeCCCeEEEEEcCCCC--------------ce-eEEEEecCCCeE
Q 019405 200 AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA--GTNDHQVRLYDTSAQR--------------RP-VMSFDFRETPIK 262 (341)
Q Consensus 200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~--~~~d~~i~iwd~~~~~--------------~~-~~~~~~~~~~v~ 262 (341)
+.. ....+++ ++ .++++ |+.||.|++||+++++ .+ +..+.+|..+|+
T Consensus 136 ~~~------------~~~~~~~--s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~ 199 (355)
T 3vu4_A 136 DIR------------FGGVCEF--SN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIK 199 (355)
T ss_dssp CEE------------EEEEEEE--ET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEE
T ss_pred ecc------------CCceEEE--Ec--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceE
Confidence 332 1334455 44 56666 5889999999999754 12 678889999999
Q ss_pred EEEEcCCCceEEEEeCCCC-EEEEECCCCeEEeEEe-ccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCc
Q 019405 263 AVAEEPDSFNIYIGNGSGD-LASVDIRTGKLLGCFI-GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ 334 (341)
Q Consensus 263 ~~~~~~~~~~l~~g~~dg~-i~iwd~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 334 (341)
+++|+|++++|++|+.|++ |++||+++++++..+. +.|...|++++|+|++++|++++.|+.|++||++.+.
T Consensus 200 ~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 200 MVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp EEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred EEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence 9999999999999999998 9999999999999998 5238999999999999999999999999999998653
No 107
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=6.1e-32 Score=225.33 Aligned_cols=238 Identities=12% Similarity=0.055 Sum_probs=181.1
Q ss_pred ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcc--hheee
Q 019405 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL--RVAIS 92 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--~~~~~ 92 (341)
-.+++++.||.|++|++... ....+..+.+|...|.+++|+++.. +++|++|+.|++|+|||+++++. ...+.
T Consensus 26 ~~lasgs~D~~v~lwd~~~~---~~~~~~~l~gH~~~V~~v~~~~~~~--~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~ 100 (316)
T 3bg1_A 26 TRLATCSSDRSVKIFDVRNG---GQILIADLRGHEGPVWQVAWAHPMY--GNILASCSYDRKVIIWREENGTWEKSHEHA 100 (316)
T ss_dssp CEEEEEETTTEEEEEEEETT---EEEEEEEEECCSSCEEEEEECCGGG--SSCEEEEETTSCEEEECCSSSCCCEEEEEC
T ss_pred CEEEEEeCCCeEEEEEecCC---CcEEEEEEcCCCccEEEEEeCCCCC--CCEEEEEECCCEEEEEECCCCcceEEEEcc
Confidence 45889999999999999864 1134567889999999999986421 34799999999999999987743 33333
Q ss_pred ccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecC
Q 019405 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI 172 (341)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~ 172 (341)
. |...+.++.+.+.... ..+++++.|+.+++|++...... .+......|...+.+++|+|
T Consensus 101 ~--------h~~~V~~v~~~p~~~g------~~lasgs~D~~i~lwd~~~~~~~------~~~~~~~~h~~~v~~~~~~~ 160 (316)
T 3bg1_A 101 G--------HDSSVNSVCWAPHDYG------LILACGSSDGAISLLTYTGEGQW------EVKKINNAHTIGCNAVSWAP 160 (316)
T ss_dssp C--------CSSCCCEEEECCTTTC------SCEEEECSSSCEEEEEECSSSCE------EECCBTTSSSSCBCCCEECC
T ss_pred C--------CCCceEEEEECCCCCC------cEEEEEcCCCCEEEEecCCCCCc------ceeeeeccccCCcceEEEcc
Confidence 3 4577888888765321 18999999999999998643210 00011123456788889988
Q ss_pred C-----------------CCEEEEeeCCCeEEEEECCCC---ceeeecCCCCCCccCccCCeeeeEEEEEecCCC----C
Q 019405 173 S-----------------EKFSLFGGKGVEVNVWDLDKC---EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH----R 228 (341)
Q Consensus 173 ~-----------------~~~l~~~~~d~~v~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~ 228 (341)
+ +++|++|+.|+.|++||++.. +....+..| ..+|.+++| +|++ .
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h---------~~~V~~v~~--sp~~~~~~~ 229 (316)
T 3bg1_A 161 AVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAH---------SDWVRDVAW--APSIGLPTS 229 (316)
T ss_dssp CCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCC---------SSCEEEEEC--CCCSSCSCC
T ss_pred ccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccC---------CCceEEEEe--cCCCCCCCc
Confidence 7 478999999999999999754 344445543 467999999 7775 7
Q ss_pred EEEEEeCCCeEEEEEcCCC---CceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECC
Q 019405 229 KFVAGTNDHQVRLYDTSAQ---RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR 288 (341)
Q Consensus 229 ~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~ 288 (341)
+|++++.|++|++||+... ......+..|...|.+++|+|++++|++++.|+.|++|+..
T Consensus 230 ~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 230 TIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred eEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 8999999999999998762 11234566788999999999999999999999999999975
No 108
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.9e-31 Score=229.92 Aligned_cols=254 Identities=13% Similarity=0.064 Sum_probs=194.8
Q ss_pred ceeEEEeccCCCCCceEEEEccCCeEEEeeCCCC-cchheeeccCCCCCCCCCCceeeEeeee-ccccccccccceeEEE
Q 019405 52 NCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG-DLRVAISNAGDSGAQPEDDGIVGLHLFK-RQREESSSRSRTLLTC 129 (341)
Q Consensus 52 ~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~ 129 (341)
...++++++.. .++++++.||.|+||++.+. +....+.. ...|.+.+.++.+.+ ... .++++
T Consensus 37 ~~~~~~~~~~~---~~~~~~~~~g~i~v~~~~~~~~~~~~~~~-----~~~h~~~V~~~~~~p~~~~--------~l~s~ 100 (402)
T 2aq5_A 37 SGFCAVNPKFM---ALICEASGGGAFLVLPLGKTGRVDKNVPL-----VCGHTAPVLDIAWCPHNDN--------VIASG 100 (402)
T ss_dssp SCSEEECSSEE---EEEBCCSSSCCEEEEETTCCEECCTTCCC-----BCCCSSCEEEEEECTTCTT--------EEEEE
T ss_pred CCcEEECCCeE---EEEEEEcCCCEEEEEECccCCCCCCCCce-----EecCCCCEEEEEeCCCCCC--------EEEEE
Confidence 33455555443 13445788999999999653 22111111 123668899999877 444 99999
Q ss_pred cccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC-CEEEEeeCCCeEEEEECCCCceeeec--CCCCCC
Q 019405 130 TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTA--KPPPKN 206 (341)
Q Consensus 130 ~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~--~~~~~~ 206 (341)
+.||.+++|++........ ....+..+. .|...|.+++|+|++ ++|++++.|+.|++||+++++.+..+ ..+
T Consensus 101 s~dg~v~vw~~~~~~~~~~-~~~~~~~~~-~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--- 175 (402)
T 2aq5_A 101 SEDCTVMVWEIPDGGLVLP-LREPVITLE-GHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVH--- 175 (402)
T ss_dssp ETTSEEEEEECCTTCCSSC-BCSCSEEEE-CCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTC---
T ss_pred eCCCeEEEEEccCCCCccc-cCCceEEec-CCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCC---
Confidence 9999999999875432110 012344444 467899999999998 69999999999999999999988887 443
Q ss_pred ccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEE-EecCCC-eEEEEEcCCCceEEEE---eCCCC
Q 019405 207 SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF-DFRETP-IKAVAEEPDSFNIYIG---NGSGD 281 (341)
Q Consensus 207 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~-v~~~~~~~~~~~l~~g---~~dg~ 281 (341)
...|.+++| +|++++|++++.|+.|++||+++++. +..+ ..|... +.++.|+|++.+|++| +.|+.
T Consensus 176 ------~~~v~~~~~--~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~ 246 (402)
T 2aq5_A 176 ------PDTIYSVDW--SRDGALICTSCRDKRVRVIEPRKGTV-VAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQ 246 (402)
T ss_dssp ------CSCEEEEEE--CTTSSCEEEEETTSEEEEEETTTTEE-EEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEE
T ss_pred ------CCceEEEEE--CCCCCEEEEEecCCcEEEEeCCCCce-eeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCce
Confidence 366999999 88999999999999999999998664 6666 677765 8999999999999999 78999
Q ss_pred EEEEECCCCeE-EeEEeccccCceeEEEecCCCCEEEE-EeCCCcEEEEEcCCCce
Q 019405 282 LASVDIRTGKL-LGCFIGKCSGSIRSIARHPTLPIIAS-CGLDSYLRFWDIKTRQL 335 (341)
Q Consensus 282 i~iwd~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~s-~~~dg~v~iwd~~~~~~ 335 (341)
|++||+++++. +......+...+.+++|+|++++|++ ++.|+.|++||+.+++.
T Consensus 247 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~ 302 (402)
T 2aq5_A 247 VALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP 302 (402)
T ss_dssp EEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT
T ss_pred EEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc
Confidence 99999998654 33333223678999999999998864 55799999999999874
No 109
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=4.7e-31 Score=226.58 Aligned_cols=299 Identities=8% Similarity=-0.023 Sum_probs=187.5
Q ss_pred eeeeecCCCCeEEEEEecCcc---Ccc--ceeeeccCCCCCceeEEEec----------------cCCCCCceEEEEccC
Q 019405 16 RALTFDSLGLIKVIEARGEHG---GVP--KVVERWGDPHSSNCVLAASI----------------DDSQNDPLLAVARKN 74 (341)
Q Consensus 16 ~~~~~~~~g~i~~~~~~~~~~---g~~--~~~~~~~~~~~~~~~~~~s~----------------~~~~~~~~l~~~~~d 74 (341)
.+++.+.++.|++|....... +.. ..+..+ .+...+..+.++. ...+.+.+|++|+.|
T Consensus 32 ~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~~~d 110 (393)
T 4gq1_A 32 NLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTI-QTGLPTLHLSFSSSCSYSENLHDGDGNVNSSPVYSLFLACVCQD 110 (393)
T ss_dssp TEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEE-ECSSCEEEEEECTTCEEECC----------CCEEEEEEEEEETT
T ss_pred CEEEEECCCCEEEEECCCCCcccccccceeeeEEE-ecCCCeeeEeecCCccccccccCCCcceeecCCCCCEEEEEeCC
Confidence 466667788899998765411 000 011111 1223333333321 112334579999999
Q ss_pred CeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceE
Q 019405 75 GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTV 154 (341)
Q Consensus 75 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v 154 (341)
++|+|||.++++....... ....+|.+.|.++.|.+............|++++.|++++|||+.... .+
T Consensus 111 ~~v~lw~~~~~~~~~~~~~---~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~--------~~ 179 (393)
T 4gq1_A 111 NTVRLIITKNETIITQHVL---GGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEG--------PI 179 (393)
T ss_dssp SCEEEEEEETTEEEEEEEE---CTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTE--------EE
T ss_pred CcEEEEECCCCccceeeee---cccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCc--------ee
Confidence 9999999987754332111 112347788999998762110000011289999999999999986433 33
Q ss_pred EEEEeecCCceEEEEecCCC-CEEEEeeCCCeEEEEECCCCceeeecCCCCCC----------------ccCccCCeeee
Q 019405 155 KSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKN----------------SLGIFTPTWFT 217 (341)
Q Consensus 155 ~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~----------------~~~~~~~~~v~ 217 (341)
... ..+...+.+++|+|++ .+|++++.|++|++||+++++........... .....|...+.
T Consensus 180 ~~~-~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~ 258 (393)
T 4gq1_A 180 LAG-YPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLA 258 (393)
T ss_dssp EEE-EECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCS
T ss_pred eee-cCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccce
Confidence 322 2456789999999987 47999999999999999987655433221110 01123456788
Q ss_pred EEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEE------------------EEcC--CCceEEEEe
Q 019405 218 SAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAV------------------AEEP--DSFNIYIGN 277 (341)
Q Consensus 218 ~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~------------------~~~~--~~~~l~~g~ 277 (341)
++.|. .+++..|++++.|+++++||+...+. ...+..|...+..+ .++| ++.++++|+
T Consensus 259 ~v~~~-~~dg~~l~s~s~d~~i~vwd~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs 336 (393)
T 4gq1_A 259 NVRWI-GSDGSGILAMCKSGAWLRWNLFANND-YNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHS 336 (393)
T ss_dssp EEEEE-TTTTCEEEEECTTSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEET
T ss_pred eeeee-cCCCCEEEEEeCCCCEEEEECccCCC-CceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEEC
Confidence 88885 58999999999999999999987543 44444443333332 3333 345677888
Q ss_pred CCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcC
Q 019405 278 GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331 (341)
Q Consensus 278 ~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~ 331 (341)
.||.|++||+.+++.+..+..| ..+|++++|+|+|++||+++.|| +.+|.+.
T Consensus 337 ~Dg~V~lwd~~~~~~~~~~~~~-~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 337 QHGLIQLINTYEKDSNSIPIQL-GMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp TTTEEEEEETTCTTCCEEEEEC-SSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred CCCEEEEEECCCCcEEEEecCC-CCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 9999999999999988888887 78999999999999999998776 6666553
No 110
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-30 Score=227.74 Aligned_cols=244 Identities=9% Similarity=0.045 Sum_probs=190.8
Q ss_pred CceeEEEeccCCCCCceE-EEEccCCeEEEeeCC--CCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeE
Q 019405 51 SNCVLAASIDDSQNDPLL-AVARKNGLTDILNPL--NGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL 127 (341)
Q Consensus 51 ~~~~~~~s~~~~~~~~~l-~~~~~dg~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 127 (341)
.+.+++|++++. +| ++++.||.|+|||+. +++.+..+..+ .+...+.++.+.+... .|+
T Consensus 104 ~v~~~~~s~d~~----~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~------~~~~~v~~~~~sp~~~--------~l~ 165 (450)
T 2vdu_B 104 YIRNLRLTSDES----RLIACADSDKSLLVFDVDKTSKNVLKLRKRF------CFSKRPNAISIAEDDT--------TVI 165 (450)
T ss_dssp CEEEEEECTTSS----EEEEEEGGGTEEEEEEECSSSSSCEEEEEEE------ECSSCEEEEEECTTSS--------EEE
T ss_pred ceEEEEEcCCCC----EEEEEECCCCeEEEEECcCCCCceeeeeecc------cCCCCceEEEEcCCCC--------EEE
Confidence 688888887766 75 889999999999998 78887777643 2346788888876655 899
Q ss_pred EEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCC---CCEEEEeeCCCeEEEEECCCCceeeec-CCC
Q 019405 128 TCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS---EKFSLFGGKGVEVNVWDLDKCEKIWTA-KPP 203 (341)
Q Consensus 128 ~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~---~~~l~~~~~d~~v~i~d~~~~~~~~~~-~~~ 203 (341)
+++.+|.+.+|++....... ..+..+. .+...|.+++|+|+ +++|++++.|+.|++||+++++.+..+ ..+
T Consensus 166 ~~~~~g~v~~~~~~~~~~~~----~~~~~~~-~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h 240 (450)
T 2vdu_B 166 IADKFGDVYSIDINSIPEEK----FTQEPIL-GHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGH 240 (450)
T ss_dssp EEETTSEEEEEETTSCCCSS----CCCCCSE-ECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCC
T ss_pred EEeCCCcEEEEecCCccccc----ccceeee-cccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCC
Confidence 99999999999986443210 0111222 35678999999999 999999999999999999988877663 333
Q ss_pred CCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEe-------------------------cC
Q 019405 204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF-------------------------RE 258 (341)
Q Consensus 204 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-------------------------~~ 258 (341)
...|.+++| + ++.+|++++.|+.|++||+++++. +..+.. ..
T Consensus 241 ---------~~~v~~~~~--s-d~~~l~s~~~d~~v~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (450)
T 2vdu_B 241 ---------KHFVSSICC--G-KDYLLLSAGGDDKIFAWDWKTGKN-LSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIE 307 (450)
T ss_dssp ---------SSCEEEEEE--C-STTEEEEEESSSEEEEEETTTCCE-EEEEECHHHHGGGCCTTSBC----------CBC
T ss_pred ---------CCceEEEEE--C-CCCEEEEEeCCCeEEEEECCCCcE-eeeecchhhhhhhhhhcccccccccccccccce
Confidence 366999999 8 999999999999999999998764 666652 23
Q ss_pred CCeEEEEEcCCCceEEEEe-CCCCEEEEEC--CCC---eEEeEEeccccCceeEEEecCCCCEEEEEeC------CCcEE
Q 019405 259 TPIKAVAEEPDSFNIYIGN-GSGDLASVDI--RTG---KLLGCFIGKCSGSIRSIARHPTLPIIASCGL------DSYLR 326 (341)
Q Consensus 259 ~~v~~~~~~~~~~~l~~g~-~dg~i~iwd~--~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~------dg~v~ 326 (341)
..|.+++|+|++++|++++ .++.|++|++ .++ +.+..+..+ ..|.+++|+|++.+++.++. +..|.
T Consensus 308 ~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~--~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~ 385 (450)
T 2vdu_B 308 FAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP--YNVISLSAHNDEFQVTLDNKESSGVQKNFAK 385 (450)
T ss_dssp CCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS--SCEEEEEEETTEEEEEECCTTCCSSCCCSEE
T ss_pred EEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC--CceEEEEecCCcEEEEEecccCCCCCCcceE
Confidence 5789999999999999998 8999999999 555 677778775 78999999996544444443 55688
Q ss_pred EEEcCC
Q 019405 327 FWDIKT 332 (341)
Q Consensus 327 iwd~~~ 332 (341)
+|.+..
T Consensus 386 v~~~~~ 391 (450)
T 2vdu_B 386 FIEYNL 391 (450)
T ss_dssp EEEEET
T ss_pred EEEEEc
Confidence 887653
No 111
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.9e-30 Score=223.70 Aligned_cols=285 Identities=9% Similarity=0.037 Sum_probs=186.5
Q ss_pred ceeeeecCCCCeEEEEEecCccCcccee---------eeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCC
Q 019405 15 LRALTFDSLGLIKVIEARGEHGGVPKVV---------ERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG 85 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~---------~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~ 85 (341)
-.+++++.||.|++|++.....- .... .....|...+.+++|+++.. .+|++++.||.|++||+.++
T Consensus 57 ~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~s~~~d~~i~iwd~~~~ 132 (408)
T 4a11_B 57 RYMLSGGSDGVIVLYDLENSSRQ-SYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDT---GMFTSSSFDKTLKVWDTNTL 132 (408)
T ss_dssp CEEEEEETTSCEEEEECCCCSSS-SCEEECEEEEECTTCTTCCSSCEEEEEECTTCT---TCEEEEETTSEEEEEETTTT
T ss_pred CEEEEEcCCCeEEEEECCCCccc-ceEeccccccccccccccCCCcEEEEEEccCCC---cEEEEEeCCCeEEEeeCCCC
Confidence 45788999999999999876211 1110 00135889999999988332 37999999999999999998
Q ss_pred cchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCce
Q 019405 86 DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTI 165 (341)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i 165 (341)
+....+.. ...+.++.+.+... ....+++++.++.+.+|++.... .+..+. .+...|
T Consensus 133 ~~~~~~~~---------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~v~~~d~~~~~--------~~~~~~-~~~~~v 189 (408)
T 4a11_B 133 QTADVFNF---------EETVYSHHMSPVST-----KHCLVAVGTRGPKVQLCDLKSGS--------CSHILQ-GHRQEI 189 (408)
T ss_dssp EEEEEEEC---------SSCEEEEEECSSCS-----SCCEEEEEESSSSEEEEESSSSC--------CCEEEC-CCCSCE
T ss_pred ccceeccC---------CCceeeeEeecCCC-----CCcEEEEEcCCCeEEEEeCCCcc--------eeeeec-CCCCcE
Confidence 87776653 25566666655332 12289999999999999986443 334443 367889
Q ss_pred EEEEecCCCC-EEEEeeCCCeEEEEECCCCc-eeeecCCCCC------CccCccCCeeeeEEEEEecCCCCEEEEEeCCC
Q 019405 166 AFSKVDISEK-FSLFGGKGVEVNVWDLDKCE-KIWTAKPPPK------NSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH 237 (341)
Q Consensus 166 ~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~-~~~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~ 237 (341)
.+++|+|+++ ++++++.||.|++||++++. ....+..+.. ......|...|.+++| +|++++|++++.|+
T Consensus 190 ~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg 267 (408)
T 4a11_B 190 LAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCF--TSDGLHLLTVGTDN 267 (408)
T ss_dssp EEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEE--CTTSSEEEEEETTS
T ss_pred EEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEE--cCCCCEEEEecCCC
Confidence 9999999998 58899999999999998765 3333322111 1111335678999999 89999999999999
Q ss_pred eEEEEEcCCCC----------------------------------------------ceeEEEEecCCCeEEEEEcCCCc
Q 019405 238 QVRLYDTSAQR----------------------------------------------RPVMSFDFRETPIKAVAEEPDSF 271 (341)
Q Consensus 238 ~i~iwd~~~~~----------------------------------------------~~~~~~~~~~~~v~~~~~~~~~~ 271 (341)
.|++||+.+++ .++..+.+|...|++++|+|+++
T Consensus 268 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~ 347 (408)
T 4a11_B 268 RMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQ 347 (408)
T ss_dssp CEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTT
T ss_pred eEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCC
Confidence 99999987643 23556677999999999999999
Q ss_pred eEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecC-CCCEEEEEeCCCcEEEEEcCC
Q 019405 272 NIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHP-TLPIIASCGLDSYLRFWDIKT 332 (341)
Q Consensus 272 ~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~dg~v~iwd~~~ 332 (341)
+|++++.||.|++||+.+++.+...... . ....+.+ ....+.+.+.|+.+++|+...
T Consensus 348 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 348 ELYSGSRDCNILAWVPSLYEPVPDDDET-T---TKSQLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp EEEEEETTSCEEEEEECC--------------------------------------------
T ss_pred EEEEECCCCeEEEEeCCCCCccCCCCce-E---eccccccccceeecccCccCceeecCCcc
Confidence 9999999999999999999887665543 1 1223444 334566777899999998764
No 112
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.7e-30 Score=219.05 Aligned_cols=252 Identities=9% Similarity=0.012 Sum_probs=193.4
Q ss_pred ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcc-------
Q 019405 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL------- 87 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~------- 87 (341)
-.+++++.||.|++|++... ...++....+.+|...+.+++|++.. ++++|++|+.||.|++||+.+++.
T Consensus 24 ~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~--d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~ 100 (351)
T 3f3f_A 24 RHVATCSSDQHIKVFKLDKD-TSNWELSDSWRAHDSSIVAIDWASPE--YGRIIASASYDKTVKLWEEDPDQEECSGRRW 100 (351)
T ss_dssp SEEEEEETTSEEEEEEECSS-SCCEEEEEEEECCSSCEEEEEECCGG--GCSEEEEEETTSCEEEEEECTTSCTTSSCSE
T ss_pred CEEEEeeCCCeEEEEECCCC-CCcceecceeccCCCcEEEEEEcCCC--CCCEEEEEcCCCeEEEEecCCCcccccccCc
Confidence 35788899999999999875 23345666788899999999998741 133899999999999999987643
Q ss_pred --hheeeccCCCCCCCCCCceeeEeeeec--cccccccccceeEEEcccceeEEEEeeecccccccC-CceEE---EEEe
Q 019405 88 --RVAISNAGDSGAQPEDDGIVGLHLFKR--QREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESS-CSTVK---SWNV 159 (341)
Q Consensus 88 --~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~-~~~v~---~~~~ 159 (341)
+..+. .+...+.++.+.+. .. .+++++.||.+.+|++.......... ...+. ....
T Consensus 101 ~~~~~~~--------~~~~~v~~~~~~~~~~~~--------~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 101 NKLCTLN--------DSKGSLYSVKFAPAHLGL--------KLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp EEEEEEC--------CCSSCEEEEEECCGGGCS--------EEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred ceeeeec--------ccCCceeEEEEcCCCCCc--------EEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence 33333 35578888888776 44 89999999999999987654321000 00000 0111
Q ss_pred ecCCceEEEEecCC---CCEEEEeeCCCeEEEEECCCCce--eeecCCCCCCccCccCCeeeeEEEEEecCCC----CEE
Q 019405 160 CASGTIAFSKVDIS---EKFSLFGGKGVEVNVWDLDKCEK--IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH----RKF 230 (341)
Q Consensus 160 ~~~~~i~~~~~~~~---~~~l~~~~~d~~v~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~l 230 (341)
.+...+.+++|+|+ +.++++++.++.+.+|+...++. ...+..+ ...|.+++| +|++ ++|
T Consensus 165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h---------~~~i~~~~~--~p~~~~~~~~l 233 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGH---------KSLIRSISW--APSIGRWYQLI 233 (351)
T ss_dssp SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCC---------CSCEEEEEE--CCCSSCSSEEE
T ss_pred CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCC---------CcceeEEEE--CCCCCCcceEE
Confidence 34567999999997 89999999999998888877664 4445443 366999999 7887 899
Q ss_pred EEEeCCCeEEEEEcCCCC---------------------------------------------ceeEEEEecCCCeEEEE
Q 019405 231 VAGTNDHQVRLYDTSAQR---------------------------------------------RPVMSFDFRETPIKAVA 265 (341)
Q Consensus 231 ~~~~~d~~i~iwd~~~~~---------------------------------------------~~~~~~~~~~~~v~~~~ 265 (341)
++++.|+.|++||++... .++..+.+|...|++++
T Consensus 234 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 313 (351)
T 3f3f_A 234 ATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVS 313 (351)
T ss_dssp EEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEE
T ss_pred EEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEE
Confidence 999999999999998641 24566777999999999
Q ss_pred EcCCCceEEEEeCCCCEEEEECCCCeEEeEE
Q 019405 266 EEPDSFNIYIGNGSGDLASVDIRTGKLLGCF 296 (341)
Q Consensus 266 ~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~ 296 (341)
|+|++++|++++.||.|++||+.+++.+..+
T Consensus 314 ~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 314 WNLTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp ECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred EcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 9999999999999999999999987655444
No 113
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.98 E-value=6.6e-30 Score=216.41 Aligned_cols=253 Identities=7% Similarity=-0.026 Sum_probs=179.7
Q ss_pred eEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceE-EEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCC
Q 019405 26 IKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLL-AVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDD 104 (341)
Q Consensus 26 i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 104 (341)
+++|++... +..... +...+..+++.++.. ++ ++++.|++|+|||..+++.+..+... .
T Consensus 42 ~~iw~~~~~-----~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~d~~v~iWd~~~~~~~~~~~~~---------~ 101 (355)
T 3vu4_A 42 FEIYNVHPV-----AHIMSQ--EMRHLSKVRMLHRTN----YVAFVTGVKEVVHIWDDVKKQDVSRIKVD---------A 101 (355)
T ss_dssp EEEEEETTE-----EEEEEE--ECSCCCEEEECTTSS----EEEEECSSTTEEEEEETTTTEEEEEEECS---------S
T ss_pred EEEEecCCc-----ceeeee--ecCCeEEEEEcCCCC----EEEEEECCccEEEEEECCCCcEEEEEECC---------C
Confidence 477776543 232222 223466777776554 55 56788899999999999888777642 4
Q ss_pred ceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEE--eeC
Q 019405 105 GIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLF--GGK 182 (341)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~--~~~ 182 (341)
.+.++.+.+. .++. ..++.+++|++..... .+..+.. ....+++++ .++++ |+.
T Consensus 102 ~v~~v~~~~~----------~~~~-~~~~~i~i~d~~~~~~-------~~~~~~~----~~~~~~~s~--~~la~~sg~~ 157 (355)
T 3vu4_A 102 PVKDLFLSRE----------FIVV-SYGDVISVFKFGNPWK-------RITDDIR----FGGVCEFSN--GLLVYSNEFN 157 (355)
T ss_dssp CEEEEEECSS----------EEEE-EETTEEEEEESSTTCC-------BSSCCEE----EEEEEEEET--TEEEEEESSC
T ss_pred ceEEEEEcCC----------EEEE-EEcCEEEEEECCCCce-------eeEEecc----CCceEEEEc--cEEEEeCCCc
Confidence 6666665321 3333 3478999999875411 1111211 233445556 55665 688
Q ss_pred CCeEEEEECCCCce----------------eeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCe-EEEEEcC
Q 019405 183 GVEVNVWDLDKCEK----------------IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ-VRLYDTS 245 (341)
Q Consensus 183 d~~v~i~d~~~~~~----------------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~-i~iwd~~ 245 (341)
||.|++||+++++. +..+.. |...|.+++| +|++++|++++.|++ |++||++
T Consensus 158 ~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~---------h~~~v~~~~~--s~~g~~l~s~s~d~~~v~iwd~~ 226 (355)
T 3vu4_A 158 LGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKA---------HTNPIKMVRL--NRKSDMVATCSQDGTIIRVFKTE 226 (355)
T ss_dssp TTCEEEEECCC------------------CCEEECC---------CSSCEEEEEE--CTTSSEEEEEETTCSEEEEEETT
T ss_pred CcEEEEEECCCCCccccccccccccccCcccEEEEc---------cCCceEEEEE--CCCCCEEEEEeCCCCEEEEEECC
Confidence 99999999987651 334444 4477999999 899999999999998 9999999
Q ss_pred CCCceeEEEE-e-cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEE--eE--------------------Eecccc
Q 019405 246 AQRRPVMSFD-F-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLL--GC--------------------FIGKCS 301 (341)
Q Consensus 246 ~~~~~~~~~~-~-~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~--~~--------------------~~~~~~ 301 (341)
+++. +..+. + |...|.+++|+|++++|++++.|+.|++||++++... .. +.....
T Consensus 227 ~~~~-~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (355)
T 3vu4_A 227 DGVL-VREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKH 305 (355)
T ss_dssp TCCE-EEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTT
T ss_pred CCcE-EEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCC
Confidence 8775 78887 4 8999999999999999999999999999999765311 11 111112
Q ss_pred CceeEEEecCCCCEEEEEeCCCcEEEEEcCCCc
Q 019405 302 GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ 334 (341)
Q Consensus 302 ~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 334 (341)
.....++|+++++.|++++.||.+++|++..+.
T Consensus 306 ~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 306 VRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp CCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred CCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 234779999999999999999999999987654
No 114
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.98 E-value=2.3e-30 Score=224.00 Aligned_cols=233 Identities=10% Similarity=0.042 Sum_probs=177.0
Q ss_pred ccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccc
Q 019405 45 WGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSR 124 (341)
Q Consensus 45 ~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (341)
+.+|...+..++|+|++ .++++.+|+. +....+.. .+.+.+.+++|.+.+.
T Consensus 48 l~gh~~~v~~V~FsPdg-----------~~~~~~~~~~---~~~~~~~~-------~~~~~V~~vawSPdG~-------- 98 (588)
T 2j04_A 48 INCNSKNLFHVKEFPLE-----------FENKLDFELA---QQNGLLNS-------QPVCYPRVCKPSPIDD-------- 98 (588)
T ss_dssp CSSBGGGTEEEEEECCC-----------CCCTTTTSCC---CSSCSSTT-------SCSCCEEEEEECSSSS--------
T ss_pred ecCCCccEEEEEECCCC-----------CcceEEEEeC---CCceEeec-------CCCCcEEEEEECCCCC--------
Confidence 45788888888887755 2444444443 22222221 2347788888887766
Q ss_pred eeEEEcccceeEEEEeeecccccccCCceEEEEEeecC----CceEEEEecCCCCEEEEeeCCCeEEEEECCCCce----
Q 019405 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCAS----GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK---- 196 (341)
Q Consensus 125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~----~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~---- 196 (341)
.+++++.||.+.+|+.+. .+...+ .+. ..+.+++|+|+|++|++|+.||+|++||+.++..
T Consensus 99 ~LAs~s~dg~V~iwd~~~----------~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~ 167 (588)
T 2j04_A 99 WMAVLSNNGNVSVFKDNK----------MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPE 167 (588)
T ss_dssp CEEEEETTSCEEEEETTE----------EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCC
T ss_pred EEEEEeCCCcEEEEeCCc----------eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCcccccc
Confidence 999999999999998421 333333 221 2599999999999999999999999999988752
Q ss_pred ---eeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCc--eeEEEE-ecCCCeEEEEEcCCC
Q 019405 197 ---IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR--PVMSFD-FRETPIKAVAEEPDS 270 (341)
Q Consensus 197 ---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~-~~~~~v~~~~~~~~~ 270 (341)
+..+..+.. .|..+|.+++| +|++ +++++.|++|++||+...+. ..+.+. +|...|.+++|+ +
T Consensus 168 ~i~l~ti~~~~~-----gh~~~V~sVaw--SPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g 236 (588)
T 2j04_A 168 FYFESSIRLSDA-----GSKDWVTHIVW--YEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--D 236 (588)
T ss_dssp CEEEEEEECSCT-----TCCCCEEEEEE--ETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--T
T ss_pred ceeeeeeecccc-----cccccEEEEEE--cCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--C
Confidence 344433221 14578999999 8888 78889999999999987653 235564 688899999999 5
Q ss_pred ceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEe--cCCCCEEEEEeCCCcEEEEEcC
Q 019405 271 FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIAR--HPTLPIIASCGLDSYLRFWDIK 331 (341)
Q Consensus 271 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~s~~~dg~v~iwd~~ 331 (341)
+.|++++ ++.|++||+.+++......+| .+.|..++| +|++..|++++.||. ++|..+
T Consensus 237 ~~LASa~-~~tIkLWd~~~~~~~~~~~gh-~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 237 YKVVLTC-PGYVHKIDLKNYSISSLKTGS-LENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp TEEEEEC-SSEEEEEETTTTEEEEEECSC-CSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred CEEEEEe-CCeEEEEECCCCeEEEEEcCC-CceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 7888887 699999999988874444366 899999999 999999999999999 999976
No 115
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=8.3e-29 Score=215.45 Aligned_cols=266 Identities=11% Similarity=0.089 Sum_probs=208.7
Q ss_pred eeeeecCCCCeEEEEEecCccCccceee-----eccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchhe
Q 019405 16 RALTFDSLGLIKVIEARGEHGGVPKVVE-----RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVA 90 (341)
Q Consensus 16 ~~~~~~~~g~i~~~~~~~~~~g~~~~~~-----~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 90 (341)
.+++++.+|.|++|++... +... .+.+|...+..++|++++. ++++++.|+.|++||+++++.+..
T Consensus 136 ~~~~~~~~~~i~~~d~~~g-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~s~~~d~~v~~~d~~~~~~~~~ 206 (433)
T 3bws_A 136 LAIPLLEDEGMDVLDINSG-----QTVRLSPPEKYKKKLGFVETISIPEHNE----LWVSQMQANAVHVFDLKTLAYKAT 206 (433)
T ss_dssp EEEEBTTSSSEEEEETTTC-----CEEEECCCHHHHTTCCEEEEEEEGGGTE----EEEEEGGGTEEEEEETTTCCEEEE
T ss_pred EEEEeCCCCeEEEEECCCC-----eEeeecCcccccccCCceeEEEEcCCCE----EEEEECCCCEEEEEECCCceEEEE
Confidence 3556677889999998765 3333 4556888899899876655 899999999999999998888777
Q ss_pred eeccCCCCCCCCCCceeeEeeeecccccccccccee-EEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEE
Q 019405 91 ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL-LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSK 169 (341)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~ 169 (341)
+.. +...+.++.+.+... .+ +++..++.+.+|++.... .+.. ......+.+++
T Consensus 207 ~~~--------~~~~~~~~~~~~~~~--------~l~~~~~~~~~i~~~d~~~~~--------~~~~--~~~~~~~~~~~ 260 (433)
T 3bws_A 207 VDL--------TGKWSKILLYDPIRD--------LVYCSNWISEDISVIDRKTKL--------EIRK--TDKIGLPRGLL 260 (433)
T ss_dssp EEC--------SSSSEEEEEEETTTT--------EEEEEETTTTEEEEEETTTTE--------EEEE--CCCCSEEEEEE
T ss_pred EcC--------CCCCeeEEEEcCCCC--------EEEEEecCCCcEEEEECCCCc--------EEEE--ecCCCCceEEE
Confidence 764 335677777765544 45 566689999999985332 2232 33356689999
Q ss_pred ecCCCCEEEEee--------CCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCE-EEEEeCCCeEE
Q 019405 170 VDISEKFSLFGG--------KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRK-FVAGTNDHQVR 240 (341)
Q Consensus 170 ~~~~~~~l~~~~--------~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-l~~~~~d~~i~ 240 (341)
++|+++++++++ .|+.|++||+.+++....+.. ...+.+++| +|+++. +++++.|+.|+
T Consensus 261 ~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~----------~~~~~~~~~--~~~g~~l~~~~~~~~~v~ 328 (433)
T 3bws_A 261 LSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGP----------PGNKRHIVS--GNTENKIYVSDMCCSKIE 328 (433)
T ss_dssp ECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEE----------EECEEEEEE--CSSTTEEEEEETTTTEEE
T ss_pred EcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccC----------CCCcceEEE--CCCCCEEEEEecCCCEEE
Confidence 999999999888 488999999998877665421 245788999 888865 46668999999
Q ss_pred EEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeC---------------CCCEEEEECCCCeEEeEEeccccCcee
Q 019405 241 LYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG---------------SGDLASVDIRTGKLLGCFIGKCSGSIR 305 (341)
Q Consensus 241 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~---------------dg~i~iwd~~~~~~~~~~~~~~~~~i~ 305 (341)
+||+.+++. +..+. +...+.+++|+|++++|++++. ||.|++||+.+++.+..+..+ ..+.
T Consensus 329 v~d~~~~~~-~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~--~~~~ 404 (433)
T 3bws_A 329 VYDLKEKKV-QKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG--NQPT 404 (433)
T ss_dssp EEETTTTEE-EEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS--SSEE
T ss_pred EEECCCCcE-EEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC--CCCc
Confidence 999997653 55554 6678999999999998888876 579999999999999888764 5789
Q ss_pred EEEecCCCCEEEEEeC-CCcEEEEEcCC
Q 019405 306 SIARHPTLPIIASCGL-DSYLRFWDIKT 332 (341)
Q Consensus 306 ~~~~~~~~~~l~s~~~-dg~v~iwd~~~ 332 (341)
+++|+|++++|++++. |+.|++|+++.
T Consensus 405 ~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 405 GLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred eEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 9999999999988875 99999999863
No 116
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8.6e-30 Score=217.47 Aligned_cols=236 Identities=13% Similarity=0.113 Sum_probs=186.1
Q ss_pred ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCc--chheee
Q 019405 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD--LRVAIS 92 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~ 92 (341)
-.+++++.||.|++|++... ++ +....+.+|...+.+++|+++.. +++|++++.||.|++||+.+++ .+..+.
T Consensus 24 ~~l~~~~~dg~i~iw~~~~~-~~--~~~~~~~~h~~~v~~~~~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 98 (379)
T 3jrp_A 24 KRLATCSSDKTIKIFEVEGE-TH--KLIDTLTGHEGPVWRVDWAHPKF--GTILASCSYDGKVLIWKEENGRWSQIAVHA 98 (379)
T ss_dssp SEEEEEETTSCEEEEEEETT-EE--EEEEEECCCSSCEEEEEECCGGG--CSEEEEEETTSCEEEEEEETTEEEEEEEEC
T ss_pred CEEEEEECCCcEEEEecCCC-cc--eeeeEecCCCCcEEEEEeCCCCC--CCEEEEeccCCEEEEEEcCCCceeEeeeec
Confidence 35788889999999999843 12 56667888999999999987622 3489999999999999998876 334443
Q ss_pred ccCCCCCCCCCCceeeEeeeec--cccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEe
Q 019405 93 NAGDSGAQPEDDGIVGLHLFKR--QREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV 170 (341)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~ 170 (341)
. +...+.++.+.+. .. .+++++.|+.+.+|++...... ..... ..+...|.+++|
T Consensus 99 ~--------~~~~v~~~~~~~~~~~~--------~l~~~~~d~~i~v~d~~~~~~~------~~~~~-~~~~~~v~~~~~ 155 (379)
T 3jrp_A 99 V--------HSASVNSVQWAPHEYGP--------LLLVASSDGKVSVVEFKENGTT------SPIII-DAHAIGVNSASW 155 (379)
T ss_dssp C--------CSSCEEEEEECCGGGCS--------EEEEEETTSEEEEEECCTTSCC------CEEEE-ECCTTCEEEEEE
T ss_pred C--------CCcceEEEEeCCCCCCC--------EEEEecCCCcEEEEecCCCCce------eeEEe-cCCCCceEEEEE
Confidence 3 4577888888776 34 8999999999999998754211 12222 346788999999
Q ss_pred cC-------------CCCEEEEeeCCCeEEEEECCCCce----eeecCCCCCCccCccCCeeeeEEEEEecCC---CCEE
Q 019405 171 DI-------------SEKFSLFGGKGVEVNVWDLDKCEK----IWTAKPPPKNSLGIFTPTWFTSAAFLSIDD---HRKF 230 (341)
Q Consensus 171 ~~-------------~~~~l~~~~~d~~v~i~d~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~l 230 (341)
+| ++.++++++.|+.|++||++++.. ...+..+ ...|.+++| +|+ +.+|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h---------~~~v~~~~~--sp~~~~~~~l 224 (379)
T 3jrp_A 156 APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH---------SDWVRDVAW--SPTVLLRSYL 224 (379)
T ss_dssp CCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC---------SSCEEEEEE--CCCCSSSEEE
T ss_pred cCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecc---------cCcEeEEEE--CCCCCCCCeE
Confidence 99 699999999999999999987643 2344443 366999999 888 8999
Q ss_pred EEEeCCCeEEEEEcCCCCcee--EE--EEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCC
Q 019405 231 VAGTNDHQVRLYDTSAQRRPV--MS--FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT 289 (341)
Q Consensus 231 ~~~~~d~~i~iwd~~~~~~~~--~~--~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~ 289 (341)
++++.|+.|++||++.+..+. .. ...|...|.+++|+|++++|++++.||.|++|++..
T Consensus 225 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 225 ASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp EEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred EEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 999999999999999864221 11 223778999999999999999999999999999874
No 117
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=1.3e-28 Score=213.39 Aligned_cols=244 Identities=16% Similarity=0.201 Sum_probs=196.3
Q ss_pred ceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcc
Q 019405 52 NCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT 131 (341)
Q Consensus 52 ~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (341)
...++||.. ++|++|. |++|+|||..+++....+..+ .+.+.|.++.|.+... .|++|+.
T Consensus 108 ~~~l~wS~~-----n~lAvgl-d~tV~lWd~~tg~~~~~~~~~------~~~~~V~sv~fspdg~--------~lasgs~ 167 (420)
T 4gga_A 108 LNLVDWSSG-----NVLAVAL-DNSVYLWSASSGDILQLLQME------QPGEYISSVAWIKEGN--------YLAVGTS 167 (420)
T ss_dssp CBCEEECTT-----SEEEEEE-TTEEEEEETTTCCEEEEEECC------STTCCEEEEEECTTSS--------EEEEEET
T ss_pred ceeEEECCC-----CEEEEEe-CCEEEEEECCCCCEEEEEEec------CCCCcEEEEEECCCCC--------EEEEEEC
Confidence 345677642 3577775 999999999999988877753 3557799999877666 9999999
Q ss_pred cceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCc-eeeecCCCCCCccCc
Q 019405 132 KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE-KIWTAKPPPKNSLGI 210 (341)
Q Consensus 132 ~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~-~~~~~~~~~~~~~~~ 210 (341)
||.+.+|++.... .++.+. .|...+.+++++ +.++++|+.|+.+++||..... .+..+..+.
T Consensus 168 Dg~v~iWd~~~~~--------~~~~~~-~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~------ 230 (420)
T 4gga_A 168 SAEVQLWDVQQQK--------RLRNMT-SHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHS------ 230 (420)
T ss_dssp TSCEEEEETTTTE--------EEEEEC-CCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCS------
T ss_pred CCeEEEEEcCCCc--------EEEEEe-CCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccc------
Confidence 9999999986443 445544 356778887764 6899999999999999988643 344455443
Q ss_pred cCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCc---eeEEEEecCCCeEEEEEcCCCc-eEEE--EeCCCCEEE
Q 019405 211 FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR---PVMSFDFRETPIKAVAEEPDSF-NIYI--GNGSGDLAS 284 (341)
Q Consensus 211 ~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~-~l~~--g~~dg~i~i 284 (341)
..+..+.+ .|++.++++++.|+.+++|+...++. .+.....|...|.+++|+|.+. ++++ |+.|+.|++
T Consensus 231 ---~~~~~~~~--~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~i 305 (420)
T 4gga_A 231 ---QEVCGLRW--APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRI 305 (420)
T ss_dssp ---SCEEEEEE--CTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEE
T ss_pred ---cceeeeee--cCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEE
Confidence 55888999 89999999999999999999987542 3566777899999999999764 4444 457999999
Q ss_pred EECCCCeEEeEEeccccCceeEEEecCCCCEEEEEe--CCCcEEEEEcCCCceeeee
Q 019405 285 VDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG--LDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 285 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~--~dg~v~iwd~~~~~~~~~~ 339 (341)
||+.+++++..+..+ ..+.++.|+|++..+++++ .|+.|+|||+.+++++.++
T Consensus 306 wd~~t~~~~~~~~~~--~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l 360 (420)
T 4gga_A 306 WNVCSGACLSAVDAH--SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL 360 (420)
T ss_dssp EETTTTEEEEEEECS--SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE
T ss_pred EeCCccccceeeccc--cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEE
Confidence 999999999988865 6799999999999887765 7999999999999998876
No 118
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=9.9e-30 Score=220.08 Aligned_cols=232 Identities=9% Similarity=0.031 Sum_probs=173.0
Q ss_pred cCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccce
Q 019405 46 GDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT 125 (341)
Q Consensus 46 ~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (341)
++-...+..++|++|+. ++|+++.|++|+ |...++.+ .+ |.+.+.++.+.+..
T Consensus 12 ~~~~~~v~sv~~SpDG~----~iASas~D~TV~--d~~~~~~l---~g--------h~~~v~~V~FsPdg---------- 64 (588)
T 2j04_A 12 KEFEDWKNNLTWARDGT----LYLTTFPDISIG--QPKYAKDI---NC--------NSKNLFHVKEFPLE---------- 64 (588)
T ss_dssp CCCSSSSCCEEECTTSC----EEEECSSSEEEE--EECCCSCC---SS--------BGGGTEEEEEECCC----------
T ss_pred hHhhccEEEEEECCCCC----EEEEEcCCceee--ccccccee---cC--------CCccEEEEEECCCC----------
Confidence 34567788999998887 899999999999 65544433 33 44666666654421
Q ss_pred eEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCC
Q 019405 126 LLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPK 205 (341)
Q Consensus 126 l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~ 205 (341)
.++.+.+|+.+. .......+...|.+++|+|+|++||+++.||.|++||.+. .+..+. +..
T Consensus 65 -----~~~~~~~~~~~~-----------~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~ 125 (588)
T 2j04_A 65 -----FENKLDFELAQQ-----------NGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKG 125 (588)
T ss_dssp -----CCCTTTTSCCCS-----------SCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSS
T ss_pred -----CcceEEEEeCCC-----------ceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCC
Confidence 233333333211 1122223457899999999999999999999999999644 444444 321
Q ss_pred CccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCc------eeEEE----EecCCCeEEEEEcCCCceEEE
Q 019405 206 NSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR------PVMSF----DFRETPIKAVAEEPDSFNIYI 275 (341)
Q Consensus 206 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~------~~~~~----~~~~~~v~~~~~~~~~~~l~~ 275 (341)
.. ....+.+++| +|+|++|++|+.||+|++||+.++.. .+..+ .+|...|.+++|+|+| +++
T Consensus 126 ~~----~~~sv~svaf--SPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laa 197 (588)
T 2j04_A 126 NL----SSRTYHCFEW--NPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVA 197 (588)
T ss_dssp CS----TTTCEEEEEE--CSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEE
T ss_pred cc----ccccEEEEEE--cCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEE
Confidence 10 0124899999 99999999999999999999998642 35666 4566799999999999 888
Q ss_pred EeCCCCEEEEECCCCeE---EeEEe-ccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCce
Q 019405 276 GNGSGDLASVDIRTGKL---LGCFI-GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL 335 (341)
Q Consensus 276 g~~dg~i~iwd~~~~~~---~~~~~-~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 335 (341)
++.|+.|++||+..++. ..+++ +| ...|.+++|+ ++.||+++ ++.|++||+.+++.
T Consensus 198 ss~D~tVrlWd~~~~~~~~~~~tL~~~h-~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~ 257 (588)
T 2j04_A 198 ALSNNSVFSMTVSASSHQPVSRMIQNAS-RRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSI 257 (588)
T ss_dssp EETTCCEEEECCCSSSSCCCEEEEECCC-SSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEE
T ss_pred EeCCCeEEEEECCCCccccceeeecccc-cCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeE
Confidence 89999999999988773 35664 55 7899999999 68999887 69999999998776
No 119
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=8.3e-28 Score=209.15 Aligned_cols=279 Identities=8% Similarity=-0.020 Sum_probs=207.0
Q ss_pred eecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCC
Q 019405 19 TFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSG 98 (341)
Q Consensus 19 ~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 98 (341)
.+.++|.+++|.+... ++..+.+..+..+ ..+.+++|+++ +.++++++.++.|++||+.+++....+... .
T Consensus 94 ~~~~~~~~~l~~~d~~-~~~~~~~~~~~~~-~~~~~~~~s~~----~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~---~ 164 (433)
T 3bws_A 94 RKPEELNEKLIALDKE-GITHRFISRFKTG-FQPKSVRFIDN----TRLAIPLLEDEGMDVLDINSGQTVRLSPPE---K 164 (433)
T ss_dssp SSGGGGTTCEEECCBT-TCSEEEEEEEECS-SCBCCCEESSS----SEEEEEBTTSSSEEEEETTTCCEEEECCCH---H
T ss_pred cccCCCceEEEEECCC-CCcceEEEEEcCC-CCceEEEEeCC----CeEEEEeCCCCeEEEEECCCCeEeeecCcc---c
Confidence 3455666677766543 2223344455433 33457777763 347788888999999999988776533210 0
Q ss_pred CCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEE
Q 019405 99 AQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSL 178 (341)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~ 178 (341)
...+...+.++.+.+... .+++++.++.+.+|+++... .+..+. .+...+.+++|+|+++.++
T Consensus 165 ~~~~~~~v~~~~~~~~~~--------~~~s~~~d~~v~~~d~~~~~--------~~~~~~-~~~~~~~~~~~~~~~~~l~ 227 (433)
T 3bws_A 165 YKKKLGFVETISIPEHNE--------LWVSQMQANAVHVFDLKTLA--------YKATVD-LTGKWSKILLYDPIRDLVY 227 (433)
T ss_dssp HHTTCCEEEEEEEGGGTE--------EEEEEGGGTEEEEEETTTCC--------EEEEEE-CSSSSEEEEEEETTTTEEE
T ss_pred ccccCCceeEEEEcCCCE--------EEEEECCCCEEEEEECCCce--------EEEEEc-CCCCCeeEEEEcCCCCEEE
Confidence 012446777777744333 88999999999999985332 344443 3567899999999999885
Q ss_pred -EeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEe--------CCCeEEEEEcCCCCc
Q 019405 179 -FGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT--------NDHQVRLYDTSAQRR 249 (341)
Q Consensus 179 -~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~--------~d~~i~iwd~~~~~~ 249 (341)
+++.++.|++||+++++....+..+ ..+.+++| +|+++++++++ .|+.|++||+++++.
T Consensus 228 ~~~~~~~~i~~~d~~~~~~~~~~~~~----------~~~~~~~~--~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~ 295 (433)
T 3bws_A 228 CSNWISEDISVIDRKTKLEIRKTDKI----------GLPRGLLL--SKDGKELYIAQFSASNQESGGGRLGIYSMDKEKL 295 (433)
T ss_dssp EEETTTTEEEEEETTTTEEEEECCCC----------SEEEEEEE--CTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEE
T ss_pred EEecCCCcEEEEECCCCcEEEEecCC----------CCceEEEE--cCCCCEEEEEECCCCccccCCCeEEEEECCCCcE
Confidence 4557999999999999887776653 34889999 89999999888 488999999998653
Q ss_pred eeEEEEecCCCeEEEEEcCCCceE-EEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeC-------
Q 019405 250 PVMSFDFRETPIKAVAEEPDSFNI-YIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGL------- 321 (341)
Q Consensus 250 ~~~~~~~~~~~v~~~~~~~~~~~l-~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~------- 321 (341)
+..+ .|...+.+++|+|+++.+ ++++.++.|++||+.+++.+..+. + ...+.+++|+|++++|++++.
T Consensus 296 -~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~-~~~~~~~~~s~dg~~l~~~~~~~~~~~~ 371 (433)
T 3bws_A 296 -IDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-V-FDKPNTIALSPDGKYLYVSCRGPNHPTE 371 (433)
T ss_dssp -EEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-C-SSSEEEEEECTTSSEEEEEECCCCCTTT
T ss_pred -Eeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-C-CCCCCeEEEcCCCCEEEEEecCCCcccc
Confidence 4443 455688999999999655 666889999999999999888876 3 678999999999998888876
Q ss_pred --------CCcEEEEEcCCCceeeee
Q 019405 322 --------DSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 322 --------dg~v~iwd~~~~~~~~~~ 339 (341)
||.|++||+.+++.+..+
T Consensus 372 ~~~~~g~~dg~v~~~d~~~~~~~~~~ 397 (433)
T 3bws_A 372 GYLKKGLVLGKVYVIDTTTDTVKEFW 397 (433)
T ss_dssp CTTSCCSSCCEEEEEETTTTEEEEEE
T ss_pred ccccccccceEEEEEECCCCcEEEEe
Confidence 579999999999887664
No 120
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=1.2e-27 Score=203.28 Aligned_cols=213 Identities=19% Similarity=0.227 Sum_probs=169.3
Q ss_pred CCCCceeeEeeeecc--ccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEE
Q 019405 101 PEDDGIVGLHLFKRQ--REESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSL 178 (341)
Q Consensus 101 ~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~ 178 (341)
.|.+.+.++.+.+.. +. .+++++.||.+++|++.... ..+...-..|...|.+++|+|++++|+
T Consensus 37 ~h~~~v~~~~~~~~~~~g~-------~l~~~~~dg~i~iw~~~~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~l~ 102 (368)
T 3mmy_A 37 SPDDSIGCLSFSPPTLPGN-------FLIAGSWANDVRCWEVQDSG-------QTIPKAQQMHTGPVLDVCWSDDGSKVF 102 (368)
T ss_dssp CCSSCEEEEEECCTTSSSE-------EEEEEETTSEEEEEEECTTS-------CEEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred CCCCceEEEEEcCCCCCce-------EEEEECCCCcEEEEEcCCCC-------ceeEEEeccccCCEEEEEECcCCCEEE
Confidence 366889999988764 22 89999999999999986421 133222234788999999999999999
Q ss_pred EeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecC
Q 019405 179 FGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE 258 (341)
Q Consensus 179 ~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 258 (341)
+++.|+.|++||+++++...... |...|.+++|.+++++.+|++++.|+.|++||+++++. +..+..+.
T Consensus 103 s~~~dg~v~iwd~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~ 171 (368)
T 3mmy_A 103 TASCDKTAKMWDLSSNQAIQIAQ----------HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP-MMVLQLPE 171 (368)
T ss_dssp EEETTSEEEEEETTTTEEEEEEE----------CSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSC-SEEEECSS
T ss_pred EEcCCCcEEEEEcCCCCceeecc----------ccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcE-EEEEecCC
Confidence 99999999999999887765332 33669999997788999999999999999999988653 55554332
Q ss_pred -----------------------------------------CCeEEEEEcCCCce----EEEEeCCCCEEEEECCCC---
Q 019405 259 -----------------------------------------TPIKAVAEEPDSFN----IYIGNGSGDLASVDIRTG--- 290 (341)
Q Consensus 259 -----------------------------------------~~v~~~~~~~~~~~----l~~g~~dg~i~iwd~~~~--- 290 (341)
..+.++.+.++... +++++.|+.|++||++..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~ 251 (368)
T 3mmy_A 172 RCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPA 251 (368)
T ss_dssp CEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHH
T ss_pred CceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcc
Confidence 23344444444433 999999999999999887
Q ss_pred eEEeEEeccccC------------ceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 291 KLLGCFIGKCSG------------SIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 291 ~~~~~~~~~~~~------------~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
+.+..+..| .. +|++++|+|++++|++++.||.|++||+++++++..+
T Consensus 252 ~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 311 (368)
T 3mmy_A 252 KDNFTFKCH-RSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTS 311 (368)
T ss_dssp HHSEEEECS-EEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC
T ss_pred ccceeeeee-ecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEe
Confidence 556777776 43 7999999999999999999999999999999988765
No 121
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=1.9e-28 Score=210.36 Aligned_cols=256 Identities=10% Similarity=-0.050 Sum_probs=173.2
Q ss_pred ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccC----CCCCceEEEEccCCeEEEeeCCCCcchhe
Q 019405 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDD----SQNDPLLAVARKNGLTDILNPLNGDLRVA 90 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~----~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 90 (341)
..+++++.|+.|++|++.........++..+.+|...|..++|++.. ..++++||+|+.|++|+|||+.++.....
T Consensus 102 ~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~ 181 (393)
T 4gq1_A 102 LFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILA 181 (393)
T ss_dssp EEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEE
T ss_pred CEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeee
Confidence 34778999999999999886222223445678899999999999732 23456999999999999999988776666
Q ss_pred eeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeeccccccc-------CCceEE--------
Q 019405 91 ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAES-------SCSTVK-------- 155 (341)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~-------~~~~v~-------- 155 (341)
+.. +...+.++.|.+.+.. .+++++.|+.+++||+......... ....+.
T Consensus 182 ~~~--------~~~~v~~v~~~p~~~~-------~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 246 (393)
T 4gq1_A 182 GYP--------LSSPGISVQFRPSNPN-------QLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVN 246 (393)
T ss_dssp EEE--------CSSCEEEEEEETTEEE-------EEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-
T ss_pred ecC--------CCCCcEEEEECCCCCc-------eEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccccee
Confidence 655 3477888888766543 7999999999999998755321100 000000
Q ss_pred -EEEeecCCceEEEEec-CCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCcc---------CccCCeeeeEEEEEec
Q 019405 156 -SWNVCASGTIAFSKVD-ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSL---------GIFTPTWFTSAAFLSI 224 (341)
Q Consensus 156 -~~~~~~~~~i~~~~~~-~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~---------~~~~~~~v~~~~~~~~ 224 (341)
.-...+...+.++.|. ++++.+++++.|+++++||+..++....+..+..... ............|.|.
T Consensus 247 ~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (393)
T 4gq1_A 247 TCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPR 326 (393)
T ss_dssp -----CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSS
T ss_pred eeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccC
Confidence 0011234567888886 7999999999999999999988766555543322110 0001122334455444
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEEC
Q 019405 225 DDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDI 287 (341)
Q Consensus 225 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~ 287 (341)
.++.++++|+.|++|++||+.+++. +..+..|..+|.+++|+|+|++||+++.+| +.+|.+
T Consensus 327 ~~~~~~~sgs~Dg~V~lwd~~~~~~-~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 327 YMDYFATAHSQHGLIQLINTYEKDS-NSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp CTTEEEEEETTTTEEEEEETTCTTC-CEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred CCCEEEEEECCCCEEEEEECCCCcE-EEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 4566778888999999999998765 667777889999999999999999998766 556554
No 122
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.96 E-value=4.7e-27 Score=195.76 Aligned_cols=244 Identities=17% Similarity=0.204 Sum_probs=191.1
Q ss_pred ceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcc
Q 019405 52 NCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT 131 (341)
Q Consensus 52 ~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (341)
..+++||+++ +||+|. |++|+|||+++++.+..+..+ .+...+.++.+.+... .+++++.
T Consensus 28 ~~~l~WS~~~-----~lAvg~-D~tV~iWd~~tg~~~~~~~~~------~~~~~V~~v~~~~~~~--------~l~sgs~ 87 (318)
T 4ggc_A 28 LNLVDWSSGN-----VLAVAL-DNSVYLWSASSGDILQLLQME------QPGEYISSVAWIKEGN--------YLAVGTS 87 (318)
T ss_dssp CBCEEECTTS-----EEEEEE-TTEEEEEETTTCCEEEEEECC------STTCCEEEEEECTTSS--------EEEEEET
T ss_pred ceEEEECCCC-----EEEEEe-CCEEEEEECCCCCEEEEEEec------CCCCeEEEEEECCCCC--------EEEEEEC
Confidence 3567887542 577765 999999999999998888764 3557788888877766 9999999
Q ss_pred cceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCce-eeecCCCCCCccCc
Q 019405 132 KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK-IWTAKPPPKNSLGI 210 (341)
Q Consensus 132 ~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~-~~~~~~~~~~~~~~ 210 (341)
||.+++|+++..+ .++.+. .|...+.++. +++..+++++.++.+++|+...... +..+..+.
T Consensus 88 Dg~v~iw~~~~~~--------~~~~~~-~h~~~~~~~~--~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~------ 150 (318)
T 4ggc_A 88 SAEVQLWDVQQQK--------RLRNMT-SHSARVGSLS--WNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHS------ 150 (318)
T ss_dssp TSEEEEEETTTTE--------EEEEEE-CCSSCEEEEE--EETTEEEEEETTSEEEEEETTSSSCEEEEEECCS------
T ss_pred CCcEEEeecCCce--------eEEEec-CccceEEEee--cCCCEEEEEecCCceEeeecCCCceeEEEEcCcc------
Confidence 9999999986443 444444 3455555544 4578999999999999999886543 34444433
Q ss_pred cCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCc---eeEEEEecCCCeEEEEEcCCCceE---EEEeCCCCEEE
Q 019405 211 FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR---PVMSFDFRETPIKAVAEEPDSFNI---YIGNGSGDLAS 284 (341)
Q Consensus 211 ~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l---~~g~~dg~i~i 284 (341)
..+..+.+ .+++++|++++.|+.|++||+++++. .......+...|.+++++|++..+ ++++.++.|++
T Consensus 151 ---~~~~~~~~--~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~l 225 (318)
T 4ggc_A 151 ---QEVCGLRW--APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRI 225 (318)
T ss_dssp ---SCEEEEEE--CTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEE
T ss_pred ---CceEEEEE--cCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEE
Confidence 55888899 88999999999999999999987542 244556678899999999977533 46678899999
Q ss_pred EECCCCeEEeEEeccccCceeEEEecCCCCEEEEEe--CCCcEEEEEcCCCceeeee
Q 019405 285 VDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG--LDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 285 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~--~dg~v~iwd~~~~~~~~~~ 339 (341)
||.+.......... ...+..+.|+|++..+++++ .|+.|++||+++++++.++
T Consensus 226 wd~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l 280 (318)
T 4ggc_A 226 WNVCSGACLSAVDA--HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL 280 (318)
T ss_dssp EETTTCCEEEEEEC--SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE
T ss_pred Eecccccccccccc--eeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEE
Confidence 99998887766553 57899999999999877654 7999999999999998876
No 123
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=1.4e-26 Score=198.63 Aligned_cols=231 Identities=13% Similarity=0.105 Sum_probs=185.4
Q ss_pred eEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccc
Q 019405 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS 146 (341)
Q Consensus 67 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~ 146 (341)
++++++.|+.|++||+.+++.+..+..+ ..+.++.+.+.... .+++++.++.+.+|++....
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~---------~~~~~~~~s~dg~~-------l~~~~~~d~~i~v~d~~~~~-- 65 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVTATIPVG---------SNPMGAVISPDGTK-------VYVANAHSNDVSIIDTATNN-- 65 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECS---------SSEEEEEECTTSSE-------EEEEEGGGTEEEEEETTTTE--
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEeecC---------CCcceEEECCCCCE-------EEEECCCCCeEEEEECCCCe--
Confidence 5888999999999999999888877753 44677776655441 34677799999999985433
Q ss_pred cccCCceEEEEEeecCCceEEEEecCCCCEEEE-eeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecC
Q 019405 147 AESSCSTVKSWNVCASGTIAFSKVDISEKFSLF-GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID 225 (341)
Q Consensus 147 ~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 225 (341)
.+..+. ....+.+++|+|+++++++ ++.++.|++||+.+++.+..+..+ ..+.+++| +|
T Consensus 66 ------~~~~~~--~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~----------~~~~~~~~--s~ 125 (391)
T 1l0q_A 66 ------VIATVP--AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG----------KSPLGLAL--SP 125 (391)
T ss_dssp ------EEEEEE--CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS----------SSEEEEEE--CT
T ss_pred ------EEEEEE--CCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC----------CCcceEEE--CC
Confidence 333333 3458999999999998764 556799999999999887776643 33788999 88
Q ss_pred CCCEE-EEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceE-EEEeCCCCEEEEECCCCeEEeEEeccccCc
Q 019405 226 DHRKF-VAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNI-YIGNGSGDLASVDIRTGKLLGCFIGKCSGS 303 (341)
Q Consensus 226 ~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~ 303 (341)
+++++ ++++.++.|++||+.+++. +..+..+ ..+..++|+|+++.| ++++.++.|++||+++++.+..+.. ...
T Consensus 126 dg~~l~~~~~~~~~v~~~d~~~~~~-~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~--~~~ 201 (391)
T 1l0q_A 126 DGKKLYVTNNGDKTVSVINTVTKAV-INTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV--EAA 201 (391)
T ss_dssp TSSEEEEEETTTTEEEEEETTTTEE-EEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC--SSE
T ss_pred CCCEEEEEeCCCCEEEEEECCCCcE-EEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec--CCC
Confidence 99877 6788899999999998654 6666655 567999999999877 5777889999999999998887764 468
Q ss_pred eeEEEecCCCCEEEEEe---CCCcEEEEEcCCCceeeee
Q 019405 304 IRSIARHPTLPIIASCG---LDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 304 i~~~~~~~~~~~l~s~~---~dg~v~iwd~~~~~~~~~~ 339 (341)
+.+++|+|++++|++++ .++.|++||+++++++..+
T Consensus 202 ~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~ 240 (391)
T 1l0q_A 202 PSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARI 240 (391)
T ss_dssp EEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEE
T ss_pred ccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEE
Confidence 99999999999988888 6899999999999887665
No 124
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=2.5e-27 Score=205.89 Aligned_cols=247 Identities=9% Similarity=0.020 Sum_probs=187.2
Q ss_pred ceeeeecCCCCeEEEEEecCc-----cCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchh
Q 019405 15 LRALTFDSLGLIKVIEARGEH-----GGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRV 89 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~ 89 (341)
..+++++.+|.|++|++.... .+..+....+..|...+++++|++++.. +|++|+.||.|++|++.++....
T Consensus 142 ~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~---~l~s~~~dg~i~vwd~~~~~~~~ 218 (430)
T 2xyi_A 142 CVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG---YLLSASDDHTICLWDINATPKEH 218 (430)
T ss_dssp EEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT---EEEEECTTSCEEEEETTSCCBGG
T ss_pred cEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC---eEEEEeCCCeEEEEeCCCCCCCC
Confidence 357788899999999998621 0112455677889999999999876542 79999999999999998743321
Q ss_pred e-eeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEE
Q 019405 90 A-ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS 168 (341)
Q Consensus 90 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~ 168 (341)
. +... ..+..+...+.++.+.+.... .+++++.+|.+++|++..... ...+..+. .+...|.++
T Consensus 219 ~~~~~~--~~~~~h~~~v~~v~~~p~~~~-------~l~s~~~dg~i~i~d~~~~~~-----~~~~~~~~-~~~~~v~~i 283 (430)
T 2xyi_A 219 RVIDAK--NIFTGHTAVVEDVAWHLLHES-------LFGSVADDQKLMIWDTRNNNT-----SKPSHTVD-AHTAEVNCL 283 (430)
T ss_dssp GEEECS--EEECCCSSCEEEEEECSSCTT-------EEEEEETTSEEEEEETTCSCS-----SSCSEEEE-CCSSCEEEE
T ss_pred ceeccc--eeecCCCCCEeeeEEeCCCCC-------EEEEEeCCCeEEEEECCCCCC-----CcceeEee-cCCCCeEEE
Confidence 1 1100 001135677888888774442 889999999999999875421 12334443 467889999
Q ss_pred EecCCCC-EEEEeeCCCeEEEEECCC-CceeeecCCCCCCccCccCCeeeeEEEEEecCCCC-EEEEEeCCCeEEEEEcC
Q 019405 169 KVDISEK-FSLFGGKGVEVNVWDLDK-CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQVRLYDTS 245 (341)
Q Consensus 169 ~~~~~~~-~l~~~~~d~~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~~i~iwd~~ 245 (341)
+|+|++. ++++|+.||.|++||+++ .+.+..+..+. ..|.+++| +|++. +|++++.|+.|++||+.
T Consensus 284 ~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~---------~~v~~i~~--sp~~~~~l~s~~~d~~i~iwd~~ 352 (430)
T 2xyi_A 284 SFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHK---------DEIFQVQW--SPHNETILASSGTDRRLHVWDLS 352 (430)
T ss_dssp EECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCS---------SCEEEEEE--CSSCTTEEEEEETTSCCEEEEGG
T ss_pred EeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCC---------CCEEEEEE--CCCCCCEEEEEeCCCcEEEEeCC
Confidence 9999887 688999999999999987 44555555543 66999999 78774 69999999999999998
Q ss_pred CCC-------------ceeEEEEecCCCeEEEEEcCCCc-eEEEEeCCCCEEEEECCCC
Q 019405 246 AQR-------------RPVMSFDFRETPIKAVAEEPDSF-NIYIGNGSGDLASVDIRTG 290 (341)
Q Consensus 246 ~~~-------------~~~~~~~~~~~~v~~~~~~~~~~-~l~~g~~dg~i~iwd~~~~ 290 (341)
... ..+..+.+|...|++++|+|++. +|++++.||.|++|++...
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 353 KIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp GTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 622 34666677888999999999998 8999999999999998643
No 125
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=8.3e-27 Score=215.95 Aligned_cols=207 Identities=14% Similarity=0.156 Sum_probs=173.7
Q ss_pred CCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCC--CCEEE
Q 019405 101 PEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS--EKFSL 178 (341)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~--~~~l~ 178 (341)
.|.+.+.++.+.+... .+++++.||.+.+|++..... ..+..+. .|...|.+++|+|+ +++|+
T Consensus 7 gH~~~V~~l~~s~dg~--------~latg~~dg~I~vwd~~~~~~------~~~~~l~-~h~~~V~~l~~s~~~~~~~l~ 71 (753)
T 3jro_A 7 AHNELIHDAVLDYYGK--------RLATCSSDKTIKIFEVEGETH------KLIDTLT-GHEGPVWRVDWAHPKFGTILA 71 (753)
T ss_dssp -CCCCEEEECCCSSSC--------CEEEEETTTEEEEEEEETTEE------EEEEEEC-CCSSCEEEEEECCTTSCSEEE
T ss_pred cCcceeEEEEECCCCC--------eEEEEECCCcEEEEecCCCCC------ccceecc-CCcCceEEEEecCCCCCCEEE
Confidence 4678899998877655 899999999999999863210 1233333 46789999999988 99999
Q ss_pred EeeCCCeEEEEECCCCc--eeeecCCCCCCccCccCCeeeeEEEEEecCC--CCEEEEEeCCCeEEEEEcCCCC-ceeEE
Q 019405 179 FGGKGVEVNVWDLDKCE--KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD--HRKFVAGTNDHQVRLYDTSAQR-RPVMS 253 (341)
Q Consensus 179 ~~~~d~~v~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~-~~~~~ 253 (341)
+|+.||.|++||+.+++ ....+..+ ...|.+++| +|+ +.++++++.||.|++||++... .....
T Consensus 72 s~s~Dg~I~vwd~~~~~~~~~~~~~~h---------~~~V~~v~~--sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~ 140 (753)
T 3jro_A 72 SCSYDGKVLIWKEENGRWSQIAVHAVH---------SASVNSVQW--APHEYGPLLLVASSDGKVSVVEFKENGTTSPII 140 (753)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCC---------SSCEEEEEE--CCGGGCSEEEEEETTSEEEEEECCSSSCCCCEE
T ss_pred EEeCCCeEEEEECCCCcccccccccCC---------CCCeEEEEE--CCCCCCCEEEEEeCCCcEEEEEeecCCCcceeE
Confidence 99999999999999876 45555544 366999999 777 9999999999999999998763 23556
Q ss_pred EEecCCCeEEEEEcC-------------CCceEEEEeCCCCEEEEECCCC----eEEeEEeccccCceeEEEecCC---C
Q 019405 254 FDFRETPIKAVAEEP-------------DSFNIYIGNGSGDLASVDIRTG----KLLGCFIGKCSGSIRSIARHPT---L 313 (341)
Q Consensus 254 ~~~~~~~v~~~~~~~-------------~~~~l~~g~~dg~i~iwd~~~~----~~~~~~~~~~~~~i~~~~~~~~---~ 313 (341)
+..|...|.+++|+| ++.+|++|+.||.|++||++++ ..+..+.+| ...|++++|+|+ +
T Consensus 141 ~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h-~~~V~~l~~sp~~~~~ 219 (753)
T 3jro_A 141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH-SDWVRDVAWSPTVLLR 219 (753)
T ss_dssp EECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCC-SSCEEEEEECCCCSSS
T ss_pred eecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCC-CCcEEEEEeccCCCCC
Confidence 778999999999999 5899999999999999999877 566778887 899999999999 8
Q ss_pred CEEEEEeCCCcEEEEEcCCCc
Q 019405 314 PIIASCGLDSYLRFWDIKTRQ 334 (341)
Q Consensus 314 ~~l~s~~~dg~v~iwd~~~~~ 334 (341)
.+|++++.||.|++||+.+++
T Consensus 220 ~~l~s~s~Dg~I~iwd~~~~~ 240 (753)
T 3jro_A 220 SYLASVSQDRTCIIWTQDNEQ 240 (753)
T ss_dssp EEEEEEESSSCEEEEEESSSS
T ss_pred CEEEEEecCCEEEEecCCCCC
Confidence 999999999999999999864
No 126
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=2.8e-25 Score=197.55 Aligned_cols=293 Identities=13% Similarity=0.041 Sum_probs=209.4
Q ss_pred ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEec----cCCCCCceEEEEc-cCCeEEEeeCCCCcchh
Q 019405 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASI----DDSQNDPLLAVAR-KNGLTDILNPLNGDLRV 89 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~----~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~ 89 (341)
-.+++++.++.|++|+++.. ++ +++.++. +......++|++ ++. +|++++ .+++|.|||..+++++.
T Consensus 191 ~~l~v~~~d~~V~v~D~~~~-t~--~~~~~i~-~g~~p~~va~sp~~~~dg~----~l~v~~~~~~~v~v~D~~t~~~~~ 262 (543)
T 1nir_A 191 RYLLVIGRDARIDMIDLWAK-EP--TKVAEIK-IGIEARSVESSKFKGYEDR----YTIAGAYWPPQFAIMDGETLEPKQ 262 (543)
T ss_dssp CEEEEEETTSEEEEEETTSS-SC--EEEEEEE-CCSEEEEEEECCSTTCTTT----EEEEEEEESSEEEEEETTTCCEEE
T ss_pred CEEEEECCCCeEEEEECcCC-CC--cEEEEEe-cCCCcceEEeCCCcCCCCC----EEEEEEccCCeEEEEeccccccce
Confidence 35677777889999999422 12 4555664 344567788887 555 888887 48999999999999888
Q ss_pred eeeccCCCCCC--CC-CCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceE
Q 019405 90 AISNAGDSGAQ--PE-DDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIA 166 (341)
Q Consensus 90 ~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~ 166 (341)
.+......... .+ +..+..+.+.+.... .+++...++.+.+|++.... .+.+....+...+.
T Consensus 263 ~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~-------~~vs~~~~g~i~vvd~~~~~--------~l~~~~i~~~~~~~ 327 (543)
T 1nir_A 263 IVSTRGMTVDTQTYHPEPRVAAIIASHEHPE-------FIVNVKETGKVLLVNYKDID--------NLTVTSIGAAPFLH 327 (543)
T ss_dssp EEECCEECSSSCCEESCCCEEEEEECSSSSE-------EEEEETTTTEEEEEECTTSS--------SCEEEEEECCSSCC
T ss_pred eecccCcccCccccccCCceEEEEECCCCCE-------EEEEECCCCeEEEEEecCCC--------cceeEEeccCcCcc
Confidence 77652110000 01 124555555443332 67788889999999976432 23333344566788
Q ss_pred EEEecCCCCEEEEe-eCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCC-CCEEEEEe-CCCeEEEEE
Q 019405 167 FSKVDISEKFSLFG-GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD-HRKFVAGT-NDHQVRLYD 243 (341)
Q Consensus 167 ~~~~~~~~~~l~~~-~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~-~d~~i~iwd 243 (341)
.+.|+|++++++++ ..+++|.+||+.+++.+..+..... .|+.... .|. +|+ +..++++. .|++|.+||
T Consensus 328 ~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~-----ph~g~g~--~~~-~p~~g~~~~s~~~~d~~V~v~d 399 (543)
T 1nir_A 328 DGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKT-----PHPGRGA--NFV-HPKYGPVWSTSHLGDGSISLIG 399 (543)
T ss_dssp CEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-----BCCTTCE--EEE-ETTTEEEEEEEBSSSSEEEEEE
T ss_pred CceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCC-----CCCCCCc--ccC-CCCCccEEEeccCCCceEEEEE
Confidence 89999999987655 4588999999999998877764321 1222222 222 455 66666665 589999999
Q ss_pred cCC-------CCceeEEEEecCCCeEEEEEcCCCceEEEEe-------CCCCEEEEECCCCeEE-eEE--------eccc
Q 019405 244 TSA-------QRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-------GSGDLASVDIRTGKLL-GCF--------IGKC 300 (341)
Q Consensus 244 ~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-------~dg~i~iwd~~~~~~~-~~~--------~~~~ 300 (341)
..+ .+ .++.+..|...+..++++|++++|++++ .+++|.+||+.+++.. ..+ ..+
T Consensus 400 ~~~~~~~~~~~~-~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~- 477 (543)
T 1nir_A 400 TDPKNHPQYAWK-KVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEG- 477 (543)
T ss_dssp CCTTTCTTTBTS-EEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSS-
T ss_pred eCCCCCchhcCe-EEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCC-
Confidence 987 45 4889998988889999999999999987 2679999999998876 333 233
Q ss_pred cCceeEEEecCCCCEEEEEe-----CCCcEEEEEcCCCceeeeec
Q 019405 301 SGSIRSIARHPTLPIIASCG-----LDSYLRFWDIKTRQLLSAVC 340 (341)
Q Consensus 301 ~~~i~~~~~~~~~~~l~s~~-----~dg~v~iwd~~~~~~~~~~~ 340 (341)
...+..+.|+|+|+.|+.+. .|+.|.|||.+++++++++.
T Consensus 478 ~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 478 AKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp CCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred CCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 57899999999999887663 47999999999999998763
No 127
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.95 E-value=7.1e-25 Score=178.65 Aligned_cols=238 Identities=10% Similarity=0.063 Sum_probs=157.1
Q ss_pred eEEEEccCCeEEEeeCCCC---cchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEE-cccceeEEEEeee
Q 019405 67 LLAVARKNGLTDILNPLNG---DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC-TTKGKASMRSIEV 142 (341)
Q Consensus 67 ~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~g~~~i~~~~~ 142 (341)
.+++++ ...|++|+..++ +.+.++..+ +.++..+.+.+...+ .+..+ +.-..-.++.+.+
T Consensus 56 ~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~-------~~~~~~~~~~~~~v~sla~ 119 (356)
T 2w18_A 56 CIITAC-EDVVSLWKALDAWQWEKLYTWHFA--------EVPVLQIVPVPDVYN-------LVCVALGNLEIREIRALFC 119 (356)
T ss_dssp EEEEEE-SSEEEEEEESSSSBEEEEEEEECC--------SSCEEEECCCTTCCS-------CEEEEECSSSEEEEEEECC
T ss_pred EEEEec-cceEEEcccCCCccceeeEEEecc--------CceeEEEEEcCcccc-------eeeeeeccccccceEEEEE
Confidence 466676 679999999988 566666653 355666666554332 22222 2223334555544
Q ss_pred cccccccCCceEEEEEeecCCceEEEEecCCCCEEEEee--CCCeEEEEECC-CCceeeecCCCCCCccCccCCeeeeEE
Q 019405 143 TKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG--KGVEVNVWDLD-KCEKIWTAKPPPKNSLGIFTPTWFTSA 219 (341)
Q Consensus 143 ~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~--~d~~v~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~ 219 (341)
.+ +|+....+.+..+..+.-..+ ++++++.+++ .|+.|++|++. +++.+..+..+. ..++.+
T Consensus 120 sp-----d~~~~~~~l~s~g~~~~v~~l-~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~---------~~v~~l 184 (356)
T 2w18_A 120 SS-----DDESEKQVLLKSGNIKAVLGL-TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMP---------PEETIL 184 (356)
T ss_dssp -----------CCEEEEEEEEEEEEEEE-TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECC---------CSSCEE
T ss_pred CC-----CccccccEEEeCCCeEEEEec-CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCC---------CceeeE
Confidence 44 222222222221111222222 5677777644 69999999994 477766655543 447778
Q ss_pred EEEe-cCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecC---CCeEEEEEcCCCceE------------EEEeCCCCEE
Q 019405 220 AFLS-IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE---TPIKAVAEEPDSFNI------------YIGNGSGDLA 283 (341)
Q Consensus 220 ~~~~-~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l------------~~g~~dg~i~ 283 (341)
+|.+ ..++.+|++++.|++|+|||+.+++. ++++.+|. ..+.+++|+|+|.++ ++|+.|++|+
T Consensus 185 ~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~-l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIk 263 (356)
T 2w18_A 185 TFAEVQGMQEALLGTTIMNNIVIWNLKTGQL-LKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLI 263 (356)
T ss_dssp EEEEEETSTTEEEEEETTSEEEEEETTTCCE-EEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEE
T ss_pred EeeccCCCCceEEEecCCCcEEEEECCCCcE-EEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEE
Confidence 8832 23789999999999999999999875 88887654 367788999999876 5678899999
Q ss_pred EEECCCCeEEeEEe-----ccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 284 SVDIRTGKLLGCFI-----GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 284 iwd~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
+||..+++.+..+. +| ...+.+..+ ++.++++++.|++|+|||+.+|++++++
T Consensus 264 lWd~~tgk~l~v~~~~~p~Gh-~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL 321 (356)
T 2w18_A 264 VINPKTTLSVGVMLYCLPPGQ-AGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALL 321 (356)
T ss_dssp EEETTTTEEEEEEEECCCTTC-CCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEE
T ss_pred EEECCCCEEEEEEEeeccCCC-cceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEe
Confidence 99999999877652 44 444444444 4889999999999999999999998876
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=1.5e-24 Score=187.14 Aligned_cols=268 Identities=8% Similarity=0.016 Sum_probs=192.3
Q ss_pred CCC----CeEEEEE--ecCccCcccee--eeccCCCCCceeEEEecc--------C--CCCCceEEEEccC------CeE
Q 019405 22 SLG----LIKVIEA--RGEHGGVPKVV--ERWGDPHSSNCVLAASID--------D--SQNDPLLAVARKN------GLT 77 (341)
Q Consensus 22 ~~g----~i~~~~~--~~~~~g~~~~~--~~~~~~~~~~~~~~~s~~--------~--~~~~~~l~~~~~d------g~i 77 (341)
.+| .+++|++ ... +.+ ..+..|...+..+++.+. + .+.+..++.++.+ +.|
T Consensus 87 ~~G~~~~~i~lwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i 161 (415)
T 2hqs_A 87 PDGSYNVAYQLVDTGGAPG-----TVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYEL 161 (415)
T ss_dssp TTSCEEEEEEEEECSSSTT-----CEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEE
T ss_pred CCCeEEEEEEEEeCCCCCC-----CEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceE
Confidence 568 7899998 654 333 356677777776665541 1 1123457666654 799
Q ss_pred EEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccc---eeEEEEeeecccccccCCceE
Q 019405 78 DILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG---KASMRSIEVTKVSAESSCSTV 154 (341)
Q Consensus 78 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g---~~~i~~~~~~~~~~~~~~~~v 154 (341)
++||++ +.....+..+ ...+.++.|.+... .++.++.++ .+.+|++.... .
T Consensus 162 ~i~d~~-g~~~~~l~~~--------~~~v~~~~~Spdg~--------~la~~s~~~~~~~i~~~d~~tg~--------~- 215 (415)
T 2hqs_A 162 RVSDYD-GYNQFVVHRS--------PQPLMSPAWSPDGS--------KLAYVTFESGRSALVIQTLANGA--------V- 215 (415)
T ss_dssp EEEETT-SCSCEEEEEE--------SSCEEEEEECTTSS--------EEEEEECTTSSCEEEEEETTTCC--------E-
T ss_pred EEEcCC-CCCCEEEeCC--------CCcceeeEEcCCCC--------EEEEEEecCCCcEEEEEECCCCc--------E-
Confidence 999997 4445555553 35677777766555 788887774 89999985332 2
Q ss_pred EEEEeecCCceEEEEecCCCCEEE-EeeCCC--eEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEE
Q 019405 155 KSWNVCASGTIAFSKVDISEKFSL-FGGKGV--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV 231 (341)
Q Consensus 155 ~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 231 (341)
.... .+...+.+++|+|+++.|+ +++.++ .|++||+.+++. ..+..+. ..+.+++| +|++++|+
T Consensus 216 ~~l~-~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~---------~~~~~~~~--spdg~~l~ 282 (415)
T 2hqs_A 216 RQVA-SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGR---------SNNTEPTW--FPDSQNLA 282 (415)
T ss_dssp EEEE-CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCS---------SCEEEEEE--CTTSSEEE
T ss_pred EEee-cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCC---------CcccceEE--CCCCCEEE
Confidence 2222 3456899999999999888 566554 499999988765 3344332 45889999 89999998
Q ss_pred EEeC-CC--eEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCC---CCEEEEECCCCeEEeEEeccccCcee
Q 019405 232 AGTN-DH--QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS---GDLASVDIRTGKLLGCFIGKCSGSIR 305 (341)
Q Consensus 232 ~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d---g~i~iwd~~~~~~~~~~~~~~~~~i~ 305 (341)
+++. ++ .|++||+.+++ ...+..+...+.+++|+|+|++|++++.+ ..|++||+.+++.. .+..+ . .+.
T Consensus 283 ~~s~~~g~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~-~-~~~ 357 (415)
T 2hqs_A 283 FTSDQAGRPQVYKVNINGGA--PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSST-F-LDE 357 (415)
T ss_dssp EEECTTSSCEEEEEETTSSC--CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCS-S-SCE
T ss_pred EEECCCCCcEEEEEECCCCC--EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCC-C-CcC
Confidence 8876 44 68888988754 44455577788999999999999988764 57999999988774 45554 3 899
Q ss_pred EEEecCCCCEEEEEeCCC---cEEEEEcCCCceeeee
Q 019405 306 SIARHPTLPIIASCGLDS---YLRFWDIKTRQLLSAV 339 (341)
Q Consensus 306 ~~~~~~~~~~l~s~~~dg---~v~iwd~~~~~~~~~~ 339 (341)
+++|+|+|++|++++.|+ .|++||+.. +.+..+
T Consensus 358 ~~~~spdg~~l~~~s~~~~~~~l~~~d~~g-~~~~~l 393 (415)
T 2hqs_A 358 TPSLAPNGTMVIYSSSQGMGSVLNLVSTDG-RFKARL 393 (415)
T ss_dssp EEEECTTSSEEEEEEEETTEEEEEEEETTS-CCEEEC
T ss_pred CeEEcCCCCEEEEEEcCCCccEEEEEECCC-CcEEEe
Confidence 999999999999988877 799999974 444443
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=3.5e-24 Score=190.52 Aligned_cols=272 Identities=13% Similarity=0.124 Sum_probs=200.2
Q ss_pred ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeC--CCCcchheee
Q 019405 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNP--LNGDLRVAIS 92 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~--~~~~~~~~~~ 92 (341)
..+++.+.+|.|.+|+.... +++.++..+.. +..++|++++. +|++++.|++|++||+ .+++.+.++.
T Consensus 150 ~~~vs~~~d~~V~v~D~~t~-----~~~~~i~~g~~-~~~v~~spdg~----~l~v~~~d~~V~v~D~~~~t~~~~~~i~ 219 (543)
T 1nir_A 150 LFSVTLRDAGQIALVDGDSK-----KIVKVIDTGYA-VHISRMSASGR----YLLVIGRDARIDMIDLWAKEPTKVAEIK 219 (543)
T ss_dssp EEEEEEGGGTEEEEEETTTC-----CEEEEEECSTT-EEEEEECTTSC----EEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred EEEEEEcCCCeEEEEECCCc-----eEEEEEecCcc-cceEEECCCCC----EEEEECCCCeEEEEECcCCCCcEEEEEe
Confidence 34667788899999987765 66667753333 67788887766 8999999999999999 7877777665
Q ss_pred ccCCCCCCCCCCceeeEeeee----ccccccccccceeEEEc-ccceeEEEEeeecccccccCCceEEEEEee-------
Q 019405 93 NAGDSGAQPEDDGIVGLHLFK----RQREESSSRSRTLLTCT-TKGKASMRSIEVTKVSAESSCSTVKSWNVC------- 160 (341)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~-~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~------- 160 (341)
.. .....+.+.+ ... .++++. .++++.+||....+ .+..+...
T Consensus 220 ~g---------~~p~~va~sp~~~~dg~--------~l~v~~~~~~~v~v~D~~t~~--------~~~~i~~~g~~~~~~ 274 (543)
T 1nir_A 220 IG---------IEARSVESSKFKGYEDR--------YTIAGAYWPPQFAIMDGETLE--------PKQIVSTRGMTVDTQ 274 (543)
T ss_dssp CC---------SEEEEEEECCSTTCTTT--------EEEEEEEESSEEEEEETTTCC--------EEEEEECCEECSSSC
T ss_pred cC---------CCcceEEeCCCcCCCCC--------EEEEEEccCCeEEEEeccccc--------cceeecccCcccCcc
Confidence 41 4455666554 344 666665 58999999965333 34444331
Q ss_pred ---cCCceEEEEecCCCCE-EEEeeCCCeEEEEECCCCceee--ecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEe
Q 019405 161 ---ASGTIAFSKVDISEKF-SLFGGKGVEVNVWDLDKCEKIW--TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT 234 (341)
Q Consensus 161 ---~~~~i~~~~~~~~~~~-l~~~~~d~~v~i~d~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 234 (341)
....+..+.++|++.. +++...++.|.+||+.+.+.+. .+.. ...+..+.| +|++++|++++
T Consensus 275 ~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~----------~~~~~~~~~--spdg~~l~va~ 342 (543)
T 1nir_A 275 TYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGA----------APFLHDGGW--DSSHRYFMTAA 342 (543)
T ss_dssp CEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEEC----------CSSCCCEEE--CTTSCEEEEEE
T ss_pred ccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEecc----------CcCccCceE--CCCCCEEEEEe
Confidence 1236889999997654 5566778999999998765433 2221 134677899 89999776554
Q ss_pred -CCCeEEEEEcCCCCceeEEEEe----cCCCeEEEEEcCC-CceEEEEe-CCCCEEEEECCC-------CeEEeEEeccc
Q 019405 235 -NDHQVRLYDTSAQRRPVMSFDF----RETPIKAVAEEPD-SFNIYIGN-GSGDLASVDIRT-------GKLLGCFIGKC 300 (341)
Q Consensus 235 -~d~~i~iwd~~~~~~~~~~~~~----~~~~v~~~~~~~~-~~~l~~g~-~dg~i~iwd~~~-------~~~~~~~~~~~ 300 (341)
.+++|.+||..+++. +..+.. |......+ ++|+ +..++++. .|++|.+||+.+ ++.+.++..|
T Consensus 343 ~~~~~v~v~D~~tg~l-~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~- 419 (543)
T 1nir_A 343 NNSNKVAVIDSKDRRL-SALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQ- 419 (543)
T ss_dssp GGGTEEEEEETTTTEE-EEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS-
T ss_pred cCCCeEEEEECCCCeE-EEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcC-
Confidence 589999999998764 666664 44333333 4777 56666665 579999999998 8999999988
Q ss_pred cCceeEEEecCCCCEEEEEe-------CCCcEEEEEcCCCcee
Q 019405 301 SGSIRSIARHPTLPIIASCG-------LDSYLRFWDIKTRQLL 336 (341)
Q Consensus 301 ~~~i~~~~~~~~~~~l~s~~-------~dg~v~iwd~~~~~~~ 336 (341)
...+..++++|++++|++++ .+++|.+||+.+++..
T Consensus 420 g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~ 462 (543)
T 1nir_A 420 GGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAK 462 (543)
T ss_dssp CSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred CCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCC
Confidence 77889999999999999987 3789999999998876
No 130
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.94 E-value=3.7e-24 Score=179.65 Aligned_cols=277 Identities=12% Similarity=0.010 Sum_probs=195.4
Q ss_pred eeeeecCCCCeEEEEEecCccCccceeeeccCCCC--CceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeec
Q 019405 16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHS--SNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN 93 (341)
Q Consensus 16 ~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 93 (341)
.+++++.+|.|.+|++... +++..+..... .+..+++++++. .+++++..++.|.+||+.+++.+..+..
T Consensus 3 ~~v~~~~~~~v~~~d~~~~-----~~~~~~~~~~~~~~~~~~~~s~dg~---~l~v~~~~~~~v~~~d~~~~~~~~~~~~ 74 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKM-----AVDKVITIADAGPTPMVPMVAPGGR---IAYATVNKSESLVKIDLVTGETLGRIDL 74 (337)
T ss_dssp EEEEEETTTEEEEEETTTT-----EEEEEEECTTCTTCCCCEEECTTSS---EEEEEETTTTEEEEEETTTCCEEEEEEC
T ss_pred EEEEcCCCCeEEEEECCCC-----cEEEEEEcCCCCCCccceEEcCCCC---EEEEEeCCCCeEEEEECCCCCeEeeEEc
Confidence 3678889999999998765 45545532221 366788887765 1345566789999999999887766654
Q ss_pred cCCCCCCCCCCceeeEeeeeccccccccccceeEEEc------------ccceeEEEEeeecccccccCCceEEEEEeec
Q 019405 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT------------TKGKASMRSIEVTKVSAESSCSTVKSWNVCA 161 (341)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------------~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~ 161 (341)
.... .+...+..+.+.+... .++++. .++.+.+|++.... .+..+. .
T Consensus 75 ~~~~---~~~~~~~~~~~s~dg~--------~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~--------~~~~~~--~ 133 (337)
T 1pby_B 75 STPE---ERVKSLFGAALSPDGK--------TLAIYESPVRLELTHFEVQPTRVALYDAETLS--------RRKAFE--A 133 (337)
T ss_dssp CBTT---EEEECTTCEEECTTSS--------EEEEEEEEEEECSSCEEECCCEEEEEETTTTE--------EEEEEE--C
T ss_pred CCcc---cccccccceEECCCCC--------EEEEEecccccccccccccCceEEEEECCCCc--------EEEEEe--C
Confidence 1100 0001334455544333 566654 46899999875322 333333 3
Q ss_pred CCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCC-C---
Q 019405 162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-H--- 237 (341)
Q Consensus 162 ~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-~--- 237 (341)
...+..++|+|++++++++ ++.|.+||+.+++....+...... ..+.| +|++..++..+.+ +
T Consensus 134 ~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~----------~~~~~--s~dg~~l~~~~~~~~~~~ 199 (337)
T 1pby_B 134 PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWE----------AETYA--QPDVLAVWNQHESSGVMA 199 (337)
T ss_dssp CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTT----------TTTBC--CCBCCCCCCCCTTTTEEE
T ss_pred CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccC----------CCcee--CCCccEEeeeccCCCcee
Confidence 4567888999999988887 678999999998887666543210 01244 6666655443322 2
Q ss_pred --------------------eEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEe
Q 019405 238 --------------------QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI 297 (341)
Q Consensus 238 --------------------~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~ 297 (341)
.|.+||+.+++.....+..+...+.+++|+|++++++++ ++.|++||+.+++.+..+.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~ 277 (337)
T 1pby_B 200 TPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP 277 (337)
T ss_dssp EEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE
T ss_pred eeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceec
Confidence 578999998765334455566678899999999999888 7899999999999888877
Q ss_pred ccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 298 GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 298 ~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
.+ ..+.+++|+|++++|++++.++.|++||+.+++.+.++
T Consensus 278 ~~--~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~ 317 (337)
T 1pby_B 278 LP--HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQV 317 (337)
T ss_dssp CS--SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEE
T ss_pred CC--CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEE
Confidence 53 56889999999999998999999999999999988765
No 131
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.93 E-value=2.5e-22 Score=168.90 Aligned_cols=275 Identities=10% Similarity=0.057 Sum_probs=182.9
Q ss_pred eeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccC-CeEEEeeCC--CCcch--hee
Q 019405 17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKN-GLTDILNPL--NGDLR--VAI 91 (341)
Q Consensus 17 ~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~d-g~i~iw~~~--~~~~~--~~~ 91 (341)
+++.+.+|.|++|++... +..+.+..+ .+...+..++|++++. +|++++.+ +.|++|++. +++.. ..+
T Consensus 8 ~~~~~~~~~v~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~spdg~----~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 80 (343)
T 1ri6_A 8 YIASPESQQIHVWNLNHE--GALTLTQVV-DVPGQVQPMVVSPDKR----YLYVGVRPEFRVLAYRIAPDDGALTFAAES 80 (343)
T ss_dssp EEEEGGGTEEEEEEECTT--SCEEEEEEE-ECSSCCCCEEECTTSS----EEEEEETTTTEEEEEEECTTTCCEEEEEEE
T ss_pred EEeCCCCCeEEEEEECCC--CcEEEeeeE-ecCCCCceEEECCCCC----EEEEeecCCCeEEEEEecCCCCceeecccc
Confidence 344478999999999753 333343344 3566777888887766 78887776 999999997 44432 222
Q ss_pred eccCCCCCCCCCCceeeEeeeeccccccccccceeEEE-cccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEe
Q 019405 92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC-TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV 170 (341)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~ 170 (341)
.. ...+..+.+.+... .++++ ..++.+.+|++.... ....+.. ......+.+++|
T Consensus 81 ~~---------~~~~~~~~~s~dg~--------~l~~~~~~~~~i~~~d~~~~~-----~~~~~~~--~~~~~~~~~~~~ 136 (343)
T 1ri6_A 81 AL---------PGSLTHISTDHQGQ--------FVFVGSYNAGNVSVTRLEDGL-----PVGVVDV--VEGLDGCHSANI 136 (343)
T ss_dssp EC---------SSCCSEEEECTTSS--------EEEEEETTTTEEEEEEEETTE-----EEEEEEE--ECCCTTBCCCEE
T ss_pred cc---------CCCCcEEEEcCCCC--------EEEEEecCCCeEEEEECCCCc-----ccccccc--ccCCCCceEEEE
Confidence 22 12455566554444 45444 458899999985111 0012222 223456888999
Q ss_pred cCCCCEEEEee-CCCeEEEEECCC-Cceee----ecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEe-CCCeEEEEE
Q 019405 171 DISEKFSLFGG-KGVEVNVWDLDK-CEKIW----TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-NDHQVRLYD 243 (341)
Q Consensus 171 ~~~~~~l~~~~-~d~~v~i~d~~~-~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~d~~i~iwd 243 (341)
+|+++++++++ .++.|.+||+.+ ++... .+..+. ...+..++| +|+++++++++ .++.|++||
T Consensus 137 s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~--~pdg~~l~~~~~~~~~i~~~~ 206 (343)
T 1ri6_A 137 SPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVE--------GAGPRHMVF--HPNEQYAYCVNELNSSVDVWE 206 (343)
T ss_dssp CTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECST--------TCCEEEEEE--CTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCC--------CCCcceEEE--CCCCCEEEEEeCCCCEEEEEE
Confidence 99999888777 889999999987 54432 112111 134778999 89998776554 789999999
Q ss_pred cCC--CCc-eeEEEEec------CCCeEEEEEcCCCceEEE-EeCCCCEEEEECC----CCeEEeEEeccccCceeEEEe
Q 019405 244 TSA--QRR-PVMSFDFR------ETPIKAVAEEPDSFNIYI-GNGSGDLASVDIR----TGKLLGCFIGKCSGSIRSIAR 309 (341)
Q Consensus 244 ~~~--~~~-~~~~~~~~------~~~v~~~~~~~~~~~l~~-g~~dg~i~iwd~~----~~~~~~~~~~~~~~~i~~~~~ 309 (341)
+.. ++. ........ ...+..++|+|++++|++ +..++.|.+||+. +.+.+..+..+ . .+..++|
T Consensus 207 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~-~-~~~~~~~ 284 (343)
T 1ri6_A 207 LKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTE-T-QPRGFNV 284 (343)
T ss_dssp SSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECS-S-SCCCEEE
T ss_pred ecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCC-C-ccceEEE
Confidence 964 221 12222211 234668999999988775 4478999999998 33455556554 3 4899999
Q ss_pred cCCCCEEEEEe-CCCcEEEEEc--CCCc
Q 019405 310 HPTLPIIASCG-LDSYLRFWDI--KTRQ 334 (341)
Q Consensus 310 ~~~~~~l~s~~-~dg~v~iwd~--~~~~ 334 (341)
+|++++|++++ .++.|.+|++ .+++
T Consensus 285 s~dg~~l~~~~~~~~~v~v~~~d~~~g~ 312 (343)
T 1ri6_A 285 DHSGKYLIAAGQKSHHISVYEIVGEQGL 312 (343)
T ss_dssp CTTSSEEEEECTTTCEEEEEEEETTTTE
T ss_pred CCCCCEEEEecCCCCeEEEEEEcCCCce
Confidence 99999888877 6899999954 4553
No 132
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.92 E-value=2.7e-23 Score=170.91 Aligned_cols=256 Identities=11% Similarity=-0.009 Sum_probs=183.1
Q ss_pred ecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCC-CcchheeeccCCCC
Q 019405 20 FDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN-GDLRVAISNAGDSG 98 (341)
Q Consensus 20 ~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~~ 98 (341)
.+.++.|.+|++... +.. .+..|...+..++|++++. +|++++ ++.|++||+.+ ++.......+
T Consensus 18 ~~~~~~i~~~d~~~~-----~~~-~~~~~~~~v~~~~~spdg~----~l~~~~-~~~i~~~d~~~~~~~~~~~~~~---- 82 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTR-----KMR-VVWQTPELFEAPNWSPDGK----YLLLNS-EGLLYRLSLAGDPSPEKVDTGF---- 82 (297)
T ss_dssp CCCCEEEEEEETTTT-----EEE-EEEEESSCCEEEEECTTSS----EEEEEE-TTEEEEEESSSCCSCEECCCTT----
T ss_pred CCcceeEEEEeCCCC-----cee-eeccCCcceEeeEECCCCC----EEEEEc-CCeEEEEeCCCCCCceEecccc----
Confidence 456788888887764 332 3445788899999988776 788876 88999999988 7665444331
Q ss_pred CCCCCCceeeEeeeeccccccccccceeEEEc--ccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCE
Q 019405 99 AQPEDDGIVGLHLFKRQREESSSRSRTLLTCT--TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKF 176 (341)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~ 176 (341)
....+.++.|.+... .++.+. .++...+|.++... +..+.+ .....+..++|+|+++.
T Consensus 83 ---~~~~~~~~~~spdg~--------~l~~~~~~~~~~~~l~~~~~~~-------~~~~~~--~~~~~~~~~~~spdg~~ 142 (297)
T 2ojh_A 83 ---ATICNNDHGISPDGA--------LYAISDKVEFGKSAIYLLPSTG-------GTPRLM--TKNLPSYWHGWSPDGKS 142 (297)
T ss_dssp ---CCCBCSCCEECTTSS--------EEEEEECTTTSSCEEEEEETTC-------CCCEEC--CSSSSEEEEEECTTSSE
T ss_pred ---ccccccceEECCCCC--------EEEEEEeCCCCcceEEEEECCC-------CceEEe--ecCCCccceEECCCCCE
Confidence 224555666655544 777777 44677777775322 122222 22345888999999998
Q ss_pred EE-EeeCCCeEEEEECC--CCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEe-CCCeEEEEEcCCCCceeE
Q 019405 177 SL-FGGKGVEVNVWDLD--KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-NDHQVRLYDTSAQRRPVM 252 (341)
Q Consensus 177 l~-~~~~d~~v~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~ 252 (341)
++ ++..++.+++|+++ +++. ..+..+ ...+.+++| +|++++|+.++ .++.+++|++......+.
T Consensus 143 l~~~~~~~~~~~l~~~~~~~~~~-~~~~~~---------~~~~~~~~~--s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~ 210 (297)
T 2ojh_A 143 FTYCGIRDQVFDIYSMDIDSGVE-TRLTHG---------EGRNDGPDY--SPDGRWIYFNSSRTGQMQIWRVRVDGSSVE 210 (297)
T ss_dssp EEEEEEETTEEEEEEEETTTCCE-EECCCS---------SSCEEEEEE--CTTSSEEEEEECTTSSCEEEEEETTSSCEE
T ss_pred EEEEECCCCceEEEEEECCCCcc-eEcccC---------CCccccceE--CCCCCEEEEEecCCCCccEEEECCCCCCcE
Confidence 77 77889999999864 3333 333322 245889999 89999888766 589999999873333466
Q ss_pred EEEecCCCeEEEEEcCCCceEEEEeCC-----------CCEEEEECCCCeE--EeEEeccccCceeEEEecCCCCEEEEE
Q 019405 253 SFDFRETPIKAVAEEPDSFNIYIGNGS-----------GDLASVDIRTGKL--LGCFIGKCSGSIRSIARHPTLPIIASC 319 (341)
Q Consensus 253 ~~~~~~~~v~~~~~~~~~~~l~~g~~d-----------g~i~iwd~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~s~ 319 (341)
.+..|...+..++|+|++++|++++.+ +.|++||+.+++. +..+.+| ...+..++|+|++++|+++
T Consensus 211 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~ 289 (297)
T 2ojh_A 211 RITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGG-QGTMNSPNWSPDGDEFAYV 289 (297)
T ss_dssp ECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEES-TTTSCSCCBCTTSSEEEEE
T ss_pred EEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCC-CcccccceECCCCCEEEEE
Confidence 777777788999999999999888765 5699999988765 4444466 7789999999999998888
Q ss_pred eCCC
Q 019405 320 GLDS 323 (341)
Q Consensus 320 ~~dg 323 (341)
+.|.
T Consensus 290 ~~~~ 293 (297)
T 2ojh_A 290 RYFP 293 (297)
T ss_dssp EECC
T ss_pred Eecc
Confidence 7664
No 133
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.92 E-value=1.5e-21 Score=164.88 Aligned_cols=247 Identities=13% Similarity=0.104 Sum_probs=183.4
Q ss_pred CCceeEEEeccCCCCCceEEEEcc-------CCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccc
Q 019405 50 SSNCVLAASIDDSQNDPLLAVARK-------NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSR 122 (341)
Q Consensus 50 ~~~~~~~~s~~~~~~~~~l~~~~~-------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (341)
.....+++++++. +|++++. ++.|.+||..+++.+..+... .....+.+.+....
T Consensus 41 ~~~~~~~~s~dg~----~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~---------~~~~~~~~s~dg~~----- 102 (353)
T 3vgz_A 41 KGAYEMAYSQQEN----ALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND---------LKPFGATINNTTQT----- 102 (353)
T ss_dssp SSEEEEEEETTTT----EEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES---------SCCCSEEEETTTTE-----
T ss_pred cCccceEECCCCC----EEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC---------CCcceEEECCCCCE-----
Confidence 4556778887665 6776663 678999999999887777652 22344555444331
Q ss_pred cceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCC--------ceEEEEecCCCCEEEEee--CCCeEEEEECC
Q 019405 123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASG--------TIAFSKVDISEKFSLFGG--KGVEVNVWDLD 192 (341)
Q Consensus 123 ~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~--------~i~~~~~~~~~~~l~~~~--~d~~v~i~d~~ 192 (341)
.+++...++.+.+|++.... .+..+...... .+..+.++|+++++++++ .++.|.+||..
T Consensus 103 --l~v~~~~~~~v~~~d~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~ 172 (353)
T 3vgz_A 103 --LWFGNTVNSAVTAIDAKTGE--------VKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGG 172 (353)
T ss_dssp --EEEEETTTTEEEEEETTTCC--------EEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETT
T ss_pred --EEEEecCCCEEEEEeCCCCe--------eEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCC
Confidence 45566667999999975433 33444432221 268899999999877765 47899999999
Q ss_pred CCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEe----cCCCeEEEEEcC
Q 019405 193 KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF----RETPIKAVAEEP 268 (341)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----~~~~v~~~~~~~ 268 (341)
+++....+.... ..+.+++| +|+++++++++.++.|.+||..+++. +..+.. +...+..++|+|
T Consensus 173 ~~~~~~~~~~~~---------~~~~~~~~--s~dg~~l~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~s~ 240 (353)
T 3vgz_A 173 NIKLKTAIQNTG---------KMSTGLAL--DSEGKRLYTTNADGELITIDTADNKI-LSRKKLLDDGKEHFFINISLDT 240 (353)
T ss_dssp TTEEEEEECCCC---------TTCCCCEE--ETTTTEEEEECTTSEEEEEETTTTEE-EEEEECCCSSSCCCEEEEEEET
T ss_pred CCceEEEecCCC---------CccceEEE--CCCCCEEEEEcCCCeEEEEECCCCeE-EEEEEcCCCCCCcccceEEECC
Confidence 998888776332 22667889 89999999999999999999998664 555554 445678899999
Q ss_pred CCceEEEEeC-CCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEe-CCCcEEEEEcCCCceeeee
Q 019405 269 DSFNIYIGNG-SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG-LDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 269 ~~~~l~~g~~-dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~ 339 (341)
+++++++++. ++.|.+||+.+++.+..+... . ...++|+|++++++.++ .++.|.+||+.+++.+..+
T Consensus 241 dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~ 310 (353)
T 3vgz_A 241 ARQRAFITDSKAAEVLVVDTRNGNILAKVAAP-E--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTF 310 (353)
T ss_dssp TTTEEEEEESSSSEEEEEETTTCCEEEEEECS-S--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEeCCCCEEEEEECCCCcEEEEEEcC-C--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEE
Confidence 9987777665 489999999999998888764 2 26799999999655554 7899999999999887765
No 134
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.92 E-value=6.1e-22 Score=165.90 Aligned_cols=275 Identities=11% Similarity=0.032 Sum_probs=181.8
Q ss_pred ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEc-cCCeEEEeeCCCCcc-hheee
Q 019405 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR-KNGLTDILNPLNGDL-RVAIS 92 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~-~~~~~ 92 (341)
.-+++...++.|.+|++... ++...+..+.... .++|++++. +|++++ .++.|.+||+.+++. ...+.
T Consensus 11 ~~~v~~~~~~~v~~~d~~~~-----~~~~~~~~~~~~~-~~~~s~dg~----~l~~~~~~~~~i~~~d~~~~~~~~~~~~ 80 (331)
T 3u4y_A 11 FGIVVEQHLRRISFFSTDTL-----EILNQITLGYDFV-DTAITSDCS----NVVVTSDFCQTLVQIETQLEPPKVVAIQ 80 (331)
T ss_dssp EEEEEEGGGTEEEEEETTTC-----CEEEEEECCCCEE-EEEECSSSC----EEEEEESTTCEEEEEECSSSSCEEEEEE
T ss_pred EEEEEecCCCeEEEEeCccc-----ceeeeEEccCCcc-eEEEcCCCC----EEEEEeCCCCeEEEEECCCCceeEEecc
Confidence 44678888999999998765 4444444444445 788877665 566555 489999999998887 55554
Q ss_pred ccCCCCCCCCCCceee-EeeeeccccccccccceeEEEcccc---eeEEEEeeecccccccCCceEEEEEeecCCceEEE
Q 019405 93 NAGDSGAQPEDDGIVG-LHLFKRQREESSSRSRTLLTCTTKG---KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS 168 (341)
Q Consensus 93 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~g---~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~ 168 (341)
.. ..... +.+.+... .+++...++ .+.+|++.... .+.... .......+
T Consensus 81 ~~---------~~~~~~~~~s~dg~--------~l~~~~~~~~~~~i~v~d~~~~~--------~~~~~~--~~~~~~~~ 133 (331)
T 3u4y_A 81 EG---------QSSMADVDITPDDQ--------FAVTVTGLNHPFNMQSYSFLKNK--------FISTIP--IPYDAVGI 133 (331)
T ss_dssp EC---------SSCCCCEEECTTSS--------EEEECCCSSSSCEEEEEETTTTE--------EEEEEE--CCTTEEEE
T ss_pred cC---------CCCccceEECCCCC--------EEEEecCCCCcccEEEEECCCCC--------eEEEEE--CCCCccce
Confidence 42 22233 55544443 566554442 89999975433 333333 34567899
Q ss_pred EecCCCCEEEEe-eCCCe-EEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEE-EeCCCeEEEEEcC
Q 019405 169 KVDISEKFSLFG-GKGVE-VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA-GTNDHQVRLYDTS 245 (341)
Q Consensus 169 ~~~~~~~~l~~~-~~d~~-v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-~~~d~~i~iwd~~ 245 (341)
+|+|++++++++ ..++. |.+|++.....+...... . +........++| +|+++++++ +..++.|++||+.
T Consensus 134 ~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~---~--~~~~~~~~~~~~--spdg~~l~v~~~~~~~v~v~d~~ 206 (331)
T 3u4y_A 134 AISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQE---F--ISGGTRPFNITF--TPDGNFAFVANLIGNSIGILETQ 206 (331)
T ss_dssp EECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEE---E--ECSSSSEEEEEE--CTTSSEEEEEETTTTEEEEEECS
T ss_pred EECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCc---c--ccCCCCccceEE--CCCCCEEEEEeCCCCeEEEEECC
Confidence 999999866554 55577 999998754332211100 0 001133678899 899986655 4568999999998
Q ss_pred CCCc--eeEEEEecCCCeEEEEEcCCCceEEEEe-CCCCEEEEECCCCeE--EeEEecc---cc---CceeEEEecCCCC
Q 019405 246 AQRR--PVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKL--LGCFIGK---CS---GSIRSIARHPTLP 314 (341)
Q Consensus 246 ~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~dg~i~iwd~~~~~~--~~~~~~~---~~---~~i~~~~~~~~~~ 314 (341)
+++. .+..+. ....+..++|+|+|++|++++ .++.|.+||+.+++. +..+..+ .. .....++|+|+++
T Consensus 207 ~~~~~~~~~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~ 285 (331)
T 3u4y_A 207 NPENITLLNAVG-TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTET 285 (331)
T ss_dssp STTSCEEEEEEE-CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSS
T ss_pred CCcccceeeecc-CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCC
Confidence 7653 144454 345678899999999776655 578899999999887 4433321 01 1235589999999
Q ss_pred EEEEEe-CCCcEEEEEcCCCc
Q 019405 315 IIASCG-LDSYLRFWDIKTRQ 334 (341)
Q Consensus 315 ~l~s~~-~dg~v~iwd~~~~~ 334 (341)
+|+.++ .++.|.+||+....
T Consensus 286 ~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 286 KLFISANISRELKVFTISGKV 306 (331)
T ss_dssp EEEEEETTTTEEEEEETTSCE
T ss_pred EEEEecCCCCcEEEEEecCCc
Confidence 876555 56699999998654
No 135
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.91 E-value=6.4e-22 Score=170.78 Aligned_cols=237 Identities=13% Similarity=0.020 Sum_probs=173.2
Q ss_pred CCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCC---eEEEeeCCCCcchheeeccCCCCCC
Q 019405 24 GLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNG---LTDILNPLNGDLRVAISNAGDSGAQ 100 (341)
Q Consensus 24 g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~~~~~ 100 (341)
+.|++|++... ....+..|...+..++|++++. +|++++.++ .|++||+.+++... +..
T Consensus 159 ~~i~i~d~~g~------~~~~l~~~~~~v~~~~~Spdg~----~la~~s~~~~~~~i~~~d~~tg~~~~-l~~------- 220 (415)
T 2hqs_A 159 YELRVSDYDGY------NQFVVHRSPQPLMSPAWSPDGS----KLAYVTFESGRSALVIQTLANGAVRQ-VAS------- 220 (415)
T ss_dssp EEEEEEETTSC------SCEEEEEESSCEEEEEECTTSS----EEEEEECTTSSCEEEEEETTTCCEEE-EEC-------
T ss_pred ceEEEEcCCCC------CCEEEeCCCCcceeeEEcCCCC----EEEEEEecCCCcEEEEEECCCCcEEE-eec-------
Confidence 68888887532 2335556788888888887766 899988875 99999999887643 333
Q ss_pred CCCCceeeEeeeeccccccccccceeE-EEcccce--eEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEE
Q 019405 101 PEDDGIVGLHLFKRQREESSSRSRTLL-TCTTKGK--ASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFS 177 (341)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~g~--~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l 177 (341)
+...+.++.|.+... .|+ +++.++. +.+|++... .+... ..+...+.+++|+|++++|
T Consensus 221 -~~~~~~~~~~spdg~--------~la~~~~~~g~~~i~~~d~~~~---------~~~~l-~~~~~~~~~~~~spdg~~l 281 (415)
T 2hqs_A 221 -FPRHNGAPAFSPDGS--------KLAFALSKTGSLNLYVMDLASG---------QIRQV-TDGRSNNTEPTWFPDSQNL 281 (415)
T ss_dssp -CSSCEEEEEECTTSS--------EEEEEECTTSSCEEEEEETTTC---------CEEEC-CCCSSCEEEEEECTTSSEE
T ss_pred -CCCcccCEEEcCCCC--------EEEEEEecCCCceEEEEECCCC---------CEEeC-cCCCCcccceEECCCCCEE
Confidence 224566666655544 555 6666665 777776432 22222 2345678999999999999
Q ss_pred EEeeCC-C--eEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCC---CeEEEEEcCCCCcee
Q 019405 178 LFGGKG-V--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND---HQVRLYDTSAQRRPV 251 (341)
Q Consensus 178 ~~~~~d-~--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~ 251 (341)
++++.+ + .|++||+.+++.. .+..+ ...+.+++| +|++++|++++.+ ..|++||+.+++ .
T Consensus 282 ~~~s~~~g~~~i~~~d~~~~~~~-~l~~~---------~~~~~~~~~--spdG~~l~~~~~~~g~~~i~~~d~~~~~--~ 347 (415)
T 2hqs_A 282 AFTSDQAGRPQVYKVNINGGAPQ-RITWE---------GSQNQDADV--SSDGKFMVMVSSNGGQQHIAKQDLATGG--V 347 (415)
T ss_dssp EEEECTTSSCEEEEEETTSSCCE-ECCCS---------SSEEEEEEE--CTTSSEEEEEEECSSCEEEEEEETTTCC--E
T ss_pred EEEECCCCCcEEEEEECCCCCEE-EEecC---------CCcccCeEE--CCCCCEEEEEECcCCceEEEEEECCCCC--E
Confidence 988764 4 6888899877643 22222 245888999 9999999988764 589999999865 3
Q ss_pred EEEEecCCCeEEEEEcCCCceEEEEeCCC---CEEEEECCCCeEEeEEeccccCceeEEEecCCCC
Q 019405 252 MSFDFRETPIKAVAEEPDSFNIYIGNGSG---DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP 314 (341)
Q Consensus 252 ~~~~~~~~~v~~~~~~~~~~~l~~g~~dg---~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 314 (341)
..+..+. .+.+++|+|+|++|++++.++ .|++||+. ++....+..| .+.|.+++|+|...
T Consensus 348 ~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~-~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 348 QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPAT-DGQVKFPAWSPYLH 410 (415)
T ss_dssp EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCS-SSEEEEEEECCCCC
T ss_pred EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCC-CCCCcCCccccccc
Confidence 4555554 899999999999999888776 79999987 5566778877 89999999999754
No 136
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.91 E-value=6.9e-21 Score=160.59 Aligned_cols=277 Identities=11% Similarity=0.055 Sum_probs=177.4
Q ss_pred CCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEcc--CCeEEEeeCCCCcc--hheeeccCCC
Q 019405 22 SLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARK--NGLTDILNPLNGDL--RVAISNAGDS 97 (341)
Q Consensus 22 ~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~--dg~i~iw~~~~~~~--~~~~~~~~~~ 97 (341)
.++.+.+|.+... +|..+.+... .+......++|++++. +++++.. ++.|++|++.+++. +..+..
T Consensus 14 ~~~~i~v~~~d~~-tg~~~~~~~~-~~~~~p~~~a~spdg~----l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~---- 83 (347)
T 3hfq_A 14 TSQGIYQGTLDTT-AKTLTNDGLL-AATQNPTYLALSAKDC----LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVA---- 83 (347)
T ss_dssp SCCEEEEEEEETT-TTEEEEEEEE-EECSCCCCEEECTTCE----EEEEEEETTEEEEEEEEEETTEEEEEEEEEE----
T ss_pred CCCCEEEEEEcCC-CCeEEEeeee-eccCCcceEEEccCCe----EEEEEecCCCceEEEEEecCCcEEEeeeeec----
Confidence 4566888888764 4533332222 3445566788887655 3444332 68999999976653 222222
Q ss_pred CCCCCCCceeeEeeeeccccccccccceeEEEc-ccceeEEEEeeecccccccCCceEEEEEee--------cCCceEEE
Q 019405 98 GAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT-TKGKASMRSIEVTKVSAESSCSTVKSWNVC--------ASGTIAFS 168 (341)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~--------~~~~i~~~ 168 (341)
+...+..+.+.+... .++++. .++.+.+|++..... ...+...... ....+.++
T Consensus 84 ----~~~~p~~~a~spdg~--------~l~~~~~~~~~v~v~~~~~~g~-----~~~~~~~~~~~~~p~~~~~~~~~~~~ 146 (347)
T 3hfq_A 84 ----PGTPPAYVAVDEARQ--------LVYSANYHKGTAEVMKIAADGA-----LTLTDTVQHSGHGPRPEQDGSHIHYT 146 (347)
T ss_dssp ----ESCCCSEEEEETTTT--------EEEEEETTTTEEEEEEECTTSC-----EEEEEEEECCCCCSSTTCSSCCEEEE
T ss_pred ----CCCCCEEEEECCCCC--------EEEEEeCCCCEEEEEEeCCCCC-----eeecceeecCCCCCCccccCCCceEE
Confidence 124455566555444 566665 789999999863211 0122222211 11247889
Q ss_pred EecCCCCEEEEeeCCCeEEEEECC-CCceee--ecCCCCCCccCccCCeeeeEEEEEecCCCCEEEE-EeCCCeEEEEEc
Q 019405 169 KVDISEKFSLFGGKGVEVNVWDLD-KCEKIW--TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA-GTNDHQVRLYDT 244 (341)
Q Consensus 169 ~~~~~~~~l~~~~~d~~v~i~d~~-~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-~~~d~~i~iwd~ 244 (341)
+|+|+++++++...++.|.+|++. +++... .+.... ...+..++| +|+++++++ ...++.|++|++
T Consensus 147 ~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~--------g~~p~~~~~--spdg~~l~v~~~~~~~v~v~~~ 216 (347)
T 3hfq_A 147 DLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEA--------GFGPRHLVF--SPDGQYAFLAGELSSQIASLKY 216 (347)
T ss_dssp EECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCT--------TCCEEEEEE--CTTSSEEEEEETTTTEEEEEEE
T ss_pred EECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCC--------CCCCceEEE--CCCCCEEEEEeCCCCEEEEEEe
Confidence 999999976677778899999998 454322 111111 123677899 899996655 567889999998
Q ss_pred CC--CCc-eeEEEEecC------CCeEEEEEcCCCceEE-EEeCCCCEEEEECC---CCeEEeEEeccccCceeEEEecC
Q 019405 245 SA--QRR-PVMSFDFRE------TPIKAVAEEPDSFNIY-IGNGSGDLASVDIR---TGKLLGCFIGKCSGSIRSIARHP 311 (341)
Q Consensus 245 ~~--~~~-~~~~~~~~~------~~v~~~~~~~~~~~l~-~g~~dg~i~iwd~~---~~~~~~~~~~~~~~~i~~~~~~~ 311 (341)
.. ++. .+..+.... ..+..++|+|+|++|+ +...++.|.+|++. ..+.+..+..+ ...+..++|+|
T Consensus 217 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~sp 295 (347)
T 3hfq_A 217 DTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTE-GDFPRDFDLDP 295 (347)
T ss_dssp ETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECS-SSCCCEEEECT
T ss_pred cCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecC-CCCcCeEEECC
Confidence 85 221 122232222 3478899999999875 45568999999987 23556666665 56789999999
Q ss_pred CCCEEEEEeCC-CcEEEE--EcCCCcee
Q 019405 312 TLPIIASCGLD-SYLRFW--DIKTRQLL 336 (341)
Q Consensus 312 ~~~~l~s~~~d-g~v~iw--d~~~~~~~ 336 (341)
+|++|++++.+ +.|.+| |.++|+..
T Consensus 296 dg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 296 TEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp TSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred CCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 99988887754 899999 55667654
No 137
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.90 E-value=1.3e-21 Score=165.03 Aligned_cols=238 Identities=11% Similarity=0.054 Sum_probs=168.9
Q ss_pred CCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeee
Q 019405 63 QNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEV 142 (341)
Q Consensus 63 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~ 142 (341)
+.+.++++++.+++|++||+.+++.+..+... .......+.+.+.... .+++...++.+.+|++..
T Consensus 9 ~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~-------~~~~~~~~~~s~dg~~-------~~v~~~~~~~i~~~d~~t 74 (349)
T 1jmx_B 9 AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMP-------DKFGPGTAMMAPDNRT-------AYVLNNHYGDIYGIDLDT 74 (349)
T ss_dssp TTCEEEEEEETTTEEEEEETTTTEEEEEEECS-------SCCSSCEEEECTTSSE-------EEEEETTTTEEEEEETTT
T ss_pred CCCEEEEEeCCCCeEEEEECCCCcEEEEEecC-------CCCCCceeEECCCCCE-------EEEEeCCCCcEEEEeCCC
Confidence 34458899999999999999998887777642 1113445555443331 445666789999999753
Q ss_pred cccccccCCceEEEEEeec-----CCceEEEEecCCCCEEEEeeCC------------CeEEEEECCCCceeeecCCCCC
Q 019405 143 TKVSAESSCSTVKSWNVCA-----SGTIAFSKVDISEKFSLFGGKG------------VEVNVWDLDKCEKIWTAKPPPK 205 (341)
Q Consensus 143 ~~~~~~~~~~~v~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~d------------~~v~i~d~~~~~~~~~~~~~~~ 205 (341)
.. .+......+ ...+..++|+|+++++++++.+ +.|.+||+.+++....+....
T Consensus 75 ~~--------~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~- 145 (349)
T 1jmx_B 75 CK--------NTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP- 145 (349)
T ss_dssp TE--------EEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-
T ss_pred Cc--------EEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-
Confidence 32 233333222 1236789999999999988865 899999998754332211100
Q ss_pred CccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecC---------------------------
Q 019405 206 NSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE--------------------------- 258 (341)
Q Consensus 206 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--------------------------- 258 (341)
++..+.+++| +|+++ +++++. .|++||..+++. +..+..+.
T Consensus 146 ------~~~~~~~~~~--s~dg~-l~~~~~--~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (349)
T 1jmx_B 146 ------MPRQVYLMRA--ADDGS-LYVAGP--DIYKMDVKTGKY-TVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSML 213 (349)
T ss_dssp ------CCSSCCCEEE--CTTSC-EEEESS--SEEEECTTTCCE-EEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEE
T ss_pred ------CCCcccceeE--CCCCc-EEEccC--cEEEEeCCCCce-eccccccccCCccccCccceeeecCCCcceeEEee
Confidence 1133778889 89998 555543 499999987653 33332221
Q ss_pred -----------------------------------------CCeEEEEEcC-CCceEEEEeCCCCEEEEECCCCeEEeEE
Q 019405 259 -----------------------------------------TPIKAVAEEP-DSFNIYIGNGSGDLASVDIRTGKLLGCF 296 (341)
Q Consensus 259 -----------------------------------------~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~ 296 (341)
..+..++|+| ++++++++ ++.|.+||+.+++.+..+
T Consensus 214 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~ 291 (349)
T 1jmx_B 214 YTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAA 291 (349)
T ss_dssp EEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEE
T ss_pred eeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEE
Confidence 1345677889 99999888 889999999999988887
Q ss_pred eccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 297 IGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 297 ~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
... ..+.+++|+|++++|++++.++.|++||+++++.+.++
T Consensus 292 ~~~--~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~ 332 (349)
T 1jmx_B 292 NLD--HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNI 332 (349)
T ss_dssp ECS--SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEE
T ss_pred cCC--CCccceEECCCCCEEEEecCCCeEEEEeccccceeeee
Confidence 753 45789999999998888888999999999999988765
No 138
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.90 E-value=2.5e-22 Score=173.93 Aligned_cols=198 Identities=7% Similarity=-0.029 Sum_probs=142.5
Q ss_pred eeEEEcccceeEEEEeeeccccccc--CCceEEE----EEeecCCceEEEEecCCCCEEE----EeeCCCeEEEEECCCC
Q 019405 125 TLLTCTTKGKASMRSIEVTKVSAES--SCSTVKS----WNVCASGTIAFSKVDISEKFSL----FGGKGVEVNVWDLDKC 194 (341)
Q Consensus 125 ~l~~~~~~g~~~i~~~~~~~~~~~~--~~~~v~~----~~~~~~~~i~~~~~~~~~~~l~----~~~~d~~v~i~d~~~~ 194 (341)
.+++++.++ +.+|+.......... ....+.. ....+...|.+++|+|++++|+ +++.|+.|++||++++
T Consensus 50 ~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~ 128 (434)
T 2oit_A 50 LVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTF 128 (434)
T ss_dssp EEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHH
T ss_pred EEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEcccc
Confidence 788887777 888775422111000 0011111 1123456799999999999999 7889999999998754
Q ss_pred --------ceeeecCCCCCCccCccCCeeeeEEEEEecCC-CCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEE
Q 019405 195 --------EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD-HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVA 265 (341)
Q Consensus 195 --------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~ 265 (341)
+.+..+... ..|...|.+++| +|+ +.+|++++.||+|++||++++.. +.....|...|.+++
T Consensus 129 ~~~~~~~~~~~~~~~~~------~~h~~~V~~v~~--~p~~~~~las~s~Dg~v~iwD~~~~~~-~~~~~~~~~~v~~v~ 199 (434)
T 2oit_A 129 SNEAKQQKRPFAYHKLL------KDAGGMVIDMKW--NPTVPSMVAVCLADGSIAVLQVTETVK-VCATLPSTVAVTSVC 199 (434)
T ss_dssp HCTTCSSCCCSEEEECC------CSGGGSEEEEEE--CSSCTTEEEEEETTSCEEEEEESSSEE-EEEEECGGGCEEEEE
T ss_pred ccCCcCCcceeeeeecc------CCCCCceEEEEE--CCCCCCEEEEEECCCeEEEEEcCCCcc-eeeccCCCCceeEEE
Confidence 111111111 114467999999 776 78999999999999999998643 555667888999999
Q ss_pred EcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccc------cCceeEEEecCCCCEEEEE-eCCC------cEEEEEcCC
Q 019405 266 EEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC------SGSIRSIARHPTLPIIASC-GLDS------YLRFWDIKT 332 (341)
Q Consensus 266 ~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~l~s~-~~dg------~v~iwd~~~ 332 (341)
|+|+|++|++|+.||.|++||++ ++....+..+. ...|.+++|++++.++++. +.|| .+++|++..
T Consensus 200 wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~ 278 (434)
T 2oit_A 200 WSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPK 278 (434)
T ss_dssp ECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCC
T ss_pred EcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEecc
Confidence 99999999999999999999998 66655555431 2389999999988877543 3443 389999986
Q ss_pred C
Q 019405 333 R 333 (341)
Q Consensus 333 ~ 333 (341)
.
T Consensus 279 ~ 279 (434)
T 2oit_A 279 K 279 (434)
T ss_dssp T
T ss_pred C
Confidence 5
No 139
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.90 E-value=1.6e-21 Score=160.20 Aligned_cols=225 Identities=12% Similarity=0.055 Sum_probs=162.4
Q ss_pred EccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeee-ccccccc
Q 019405 71 ARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEV-TKVSAES 149 (341)
Q Consensus 71 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~-~~~~~~~ 149 (341)
++.|++|++||+.+++...... + ...+.++.+.+... .++++. ++.+.+|++.. ..
T Consensus 18 ~~~~~~i~~~d~~~~~~~~~~~-~--------~~~v~~~~~spdg~--------~l~~~~-~~~i~~~d~~~~~~----- 74 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMRVVWQ-T--------PELFEAPNWSPDGK--------YLLLNS-EGLLYRLSLAGDPS----- 74 (297)
T ss_dssp CCCCEEEEEEETTTTEEEEEEE-E--------SSCCEEEEECTTSS--------EEEEEE-TTEEEEEESSSCCS-----
T ss_pred CCcceeEEEEeCCCCceeeecc-C--------CcceEeeEECCCCC--------EEEEEc-CCeEEEEeCCCCCC-----
Confidence 4578999999998877653332 2 35677777665544 666654 88999999864 32
Q ss_pred CCceEEEEEeecCCceEEEEecCCCCEEEEeeC--C--CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecC
Q 019405 150 SCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK--G--VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID 225 (341)
Q Consensus 150 ~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~--d--~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 225 (341)
...+........+.+++|+|++++|++++. + ..|..++..+++. ..+... ..+..++| +|
T Consensus 75 ---~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~----------~~~~~~~~--sp 138 (297)
T 2ojh_A 75 ---PEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP-RLMTKN----------LPSYWHGW--SP 138 (297)
T ss_dssp ---CEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC-EECCSS----------SSEEEEEE--CT
T ss_pred ---ceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCce-EEeecC----------CCccceEE--CC
Confidence 222222222367888999999999999883 3 3455555555442 222222 23778899 89
Q ss_pred CCCEEE-EEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEe-CCCCEEEEECC-CCeEEeEEeccccC
Q 019405 226 DHRKFV-AGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIR-TGKLLGCFIGKCSG 302 (341)
Q Consensus 226 ~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~dg~i~iwd~~-~~~~~~~~~~~~~~ 302 (341)
++++|+ ++..++.+++|++.........+..+...+.+++|+|++++|+.++ .++.+++|++. .+..+..+..+ ..
T Consensus 139 dg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~ 217 (297)
T 2ojh_A 139 DGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDS-AY 217 (297)
T ss_dssp TSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCC-SE
T ss_pred CCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecC-Cc
Confidence 999877 7788999999997543333566666778899999999999887666 58999999886 45566667766 67
Q ss_pred ceeEEEecCCCCEEEEEeCC-----------CcEEEEEcCCCce
Q 019405 303 SIRSIARHPTLPIIASCGLD-----------SYLRFWDIKTRQL 335 (341)
Q Consensus 303 ~i~~~~~~~~~~~l~s~~~d-----------g~v~iwd~~~~~~ 335 (341)
.+..++|+|++++|++++.+ +.|++||+.+++.
T Consensus 218 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 261 (297)
T 2ojh_A 218 GDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV 261 (297)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred ccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc
Confidence 89999999999999888876 5699999998765
No 140
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.89 E-value=3e-20 Score=155.58 Aligned_cols=230 Identities=9% Similarity=-0.010 Sum_probs=164.3
Q ss_pred eEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEE-cccceeEEEEeeeccc
Q 019405 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC-TTKGKASMRSIEVTKV 145 (341)
Q Consensus 67 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~g~~~i~~~~~~~~ 145 (341)
.+++...++.|++||..+++.+..+... .... .+.+.+... .++++ ..++.+.+|++.....
T Consensus 12 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~--------~~~~-~~~~s~dg~--------~l~~~~~~~~~i~~~d~~~~~~ 74 (331)
T 3u4y_A 12 GIVVEQHLRRISFFSTDTLEILNQITLG--------YDFV-DTAITSDCS--------NVVVTSDFCQTLVQIETQLEPP 74 (331)
T ss_dssp EEEEEGGGTEEEEEETTTCCEEEEEECC--------CCEE-EEEECSSSC--------EEEEEESTTCEEEEEECSSSSC
T ss_pred EEEEecCCCeEEEEeCcccceeeeEEcc--------CCcc-eEEEcCCCC--------EEEEEeCCCCeEEEEECCCCce
Confidence 5778889999999999999887776641 2334 555544443 45444 4488999999864331
Q ss_pred ccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCC---eEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEE
Q 019405 146 SAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGV---EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFL 222 (341)
Q Consensus 146 ~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~---~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 222 (341)
....... +..+..+++|+|++++++++..++ .|.+||+.+++.+..+.... ...+++|
T Consensus 75 -------~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~----------~~~~~~~- 135 (331)
T 3u4y_A 75 -------KVVAIQE-GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY----------DAVGIAI- 135 (331)
T ss_dssp -------EEEEEEE-CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT----------TEEEEEE-
T ss_pred -------eEEeccc-CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC----------CccceEE-
Confidence 1333322 233444499999999999655553 89999999988877665432 2578999
Q ss_pred ecCCCCEEEEE-eCCCe-EEEEEcCCCCcee---EEEEecCCCeEEEEEcCCCceEEEE-eCCCCEEEEECCCCeE---E
Q 019405 223 SIDDHRKFVAG-TNDHQ-VRLYDTSAQRRPV---MSFDFRETPIKAVAEEPDSFNIYIG-NGSGDLASVDIRTGKL---L 293 (341)
Q Consensus 223 ~~~~~~~l~~~-~~d~~-i~iwd~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~g-~~dg~i~iwd~~~~~~---~ 293 (341)
+|++++++++ ..++. |.+|++....... ............++|+|+|++++++ ..++.|++||+.+++. +
T Consensus 136 -spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~ 214 (331)
T 3u4y_A 136 -SPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLL 214 (331)
T ss_dssp -CTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEE
T ss_pred -CCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCccccee
Confidence 8999865554 55578 9999998643311 1122334567899999999866554 4688999999999887 7
Q ss_pred eEEeccccCceeEEEecCCCCEEEEEe-CCCcEEEEEcCCCce
Q 019405 294 GCFIGKCSGSIRSIARHPTLPIIASCG-LDSYLRFWDIKTRQL 335 (341)
Q Consensus 294 ~~~~~~~~~~i~~~~~~~~~~~l~s~~-~dg~v~iwd~~~~~~ 335 (341)
..+.. ...+..++|+|+|++|+.++ .++.|.+||+.+++.
T Consensus 215 ~~~~~--~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 215 NAVGT--NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL 255 (331)
T ss_dssp EEEEC--SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEE
T ss_pred eeccC--CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCce
Confidence 77765 46778999999999765554 578899999999877
No 141
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.89 E-value=3.1e-19 Score=151.35 Aligned_cols=285 Identities=11% Similarity=0.047 Sum_probs=179.4
Q ss_pred ceeeee----cCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccC----CeEEEeeCCC--
Q 019405 15 LRALTF----DSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKN----GLTDILNPLN-- 84 (341)
Q Consensus 15 ~~~~~~----~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~d----g~i~iw~~~~-- 84 (341)
..++.| +.++.|.+|.+... +|..+.+... +......++|+++++ +|++++.+ +.|.+|++..
T Consensus 14 ~~~~vg~y~~~~~~~i~~~~~d~~-~g~~~~~~~~--~~~~p~~l~~spdg~----~l~~~~~~~~~~~~v~~~~~~~~~ 86 (361)
T 3scy_A 14 LTMLVGTYTSGNSKGIYTFRFNEE-TGESLPLSDA--EVANPSYLIPSADGK----FVYSVNEFSKDQAAVSAFAFDKEK 86 (361)
T ss_dssp EEEEEEECCSSSCCEEEEEEEETT-TCCEEEEEEE--ECSCCCSEEECTTSS----EEEEEECCSSTTCEEEEEEEETTT
T ss_pred eEEEEEeccCCCCCCEEEEEEeCC-CCCEEEeecc--cCCCCceEEECCCCC----EEEEEEccCCCCCcEEEEEEeCCC
Confidence 345555 35678899998765 4544444444 556667788887766 78888775 7999998865
Q ss_pred CcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEee----
Q 019405 85 GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC---- 160 (341)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~---- 160 (341)
++. ..+.... ........+.+ ... ..+++...++.+.+|++....... . ........
T Consensus 87 g~~-~~~~~~~-----~~~~~p~~~~~--dg~-------~l~~~~~~~~~v~~~~~~~~g~~~--~--~~~~~~~~g~~~ 147 (361)
T 3scy_A 87 GTL-HLLNTQK-----TMGADPCYLTT--NGK-------NIVTANYSGGSITVFPIGQDGALL--P--ASDVIEFKGSGP 147 (361)
T ss_dssp TEE-EEEEEEE-----CSSSCEEEEEE--CSS-------EEEEEETTTTEEEEEEBCTTSCBC--S--CSEEEECCCCCS
T ss_pred CcE-EEeeEec-----cCCCCcEEEEE--CCC-------EEEEEECCCCEEEEEEeCCCCcCc--c--cceeEEccCCCC
Confidence 332 2222110 01233444554 222 044444568899999986432111 0 11111111
Q ss_pred -----cCCceEEEEecCCCCEEEEee-CCCeEEEEECCCCce------e------eecCCCCCCccCccCCeeeeEEEEE
Q 019405 161 -----ASGTIAFSKVDISEKFSLFGG-KGVEVNVWDLDKCEK------I------WTAKPPPKNSLGIFTPTWFTSAAFL 222 (341)
Q Consensus 161 -----~~~~i~~~~~~~~~~~l~~~~-~d~~v~i~d~~~~~~------~------~~~~~~~~~~~~~~~~~~v~~~~~~ 222 (341)
....+.+++|+|++++++++. .++.|.+|++..... + ...... ....+..++|
T Consensus 148 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~--------~~~~~~~~~~- 218 (361)
T 3scy_A 148 DKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVA--------PGSGPRHLIF- 218 (361)
T ss_dssp CTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECC--------TTCCEEEEEE-
T ss_pred CccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecC--------CCCCCeEEEE-
Confidence 122357899999999766554 478999999875331 1 111111 1133678999
Q ss_pred ecCCCCEEEEEe-CCCeEEEEEcCCCCc-eeEEEEe---cCCCeEEEEEcCCCceEEEEeCC--CCEEEEECC--CCe--
Q 019405 223 SIDDHRKFVAGT-NDHQVRLYDTSAQRR-PVMSFDF---RETPIKAVAEEPDSFNIYIGNGS--GDLASVDIR--TGK-- 291 (341)
Q Consensus 223 ~~~~~~~l~~~~-~d~~i~iwd~~~~~~-~~~~~~~---~~~~v~~~~~~~~~~~l~~g~~d--g~i~iwd~~--~~~-- 291 (341)
+|+++++++++ .++.|.+||+.+++. .+..+.. +......++|+|+|++|+++..+ +.|.+|++. +++
T Consensus 219 -spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~ 297 (361)
T 3scy_A 219 -NSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLT 297 (361)
T ss_dssp -CTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEE
T ss_pred -cCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEE
Confidence 89999887776 689999999986532 1222222 22446799999999998776654 889999985 454
Q ss_pred EEeEEeccccCceeEEEecCCCCEEEEEe-CCCcEEEE--EcCCCceee
Q 019405 292 LLGCFIGKCSGSIRSIARHPTLPIIASCG-LDSYLRFW--DIKTRQLLS 337 (341)
Q Consensus 292 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-~dg~v~iw--d~~~~~~~~ 337 (341)
.+..+.. ...+..++|+|+|++|++++ .++.|.+| |.++|+...
T Consensus 298 ~~~~~~~--g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~ 344 (361)
T 3scy_A 298 KVGYQLT--GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTD 344 (361)
T ss_dssp EEEEEEC--SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred EeeEecC--CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEee
Confidence 3444443 35688999999999888887 67899996 555676543
No 142
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.89 E-value=9.6e-21 Score=175.15 Aligned_cols=278 Identities=8% Similarity=0.005 Sum_probs=180.0
Q ss_pred eeeeecCCCCeEEEEEecCccCccceeeeccCCCC---CceeEEEeccCCCCCceEEEEccC---------CeEEEeeCC
Q 019405 16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHS---SNCVLAASIDDSQNDPLLAVARKN---------GLTDILNPL 83 (341)
Q Consensus 16 ~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~s~~~~~~~~~l~~~~~d---------g~i~iw~~~ 83 (341)
+++..+.||.+++|++... +....+..+.. .+..++||+|++ +|++++.+ +.|.+||+.
T Consensus 29 ~~~~~~~dg~i~~~d~~~g-----~~~~~~~~~~~~~~~v~~~~~SpDg~----~l~~~~~~~~~~~~~~~~~i~~~d~~ 99 (723)
T 1xfd_A 29 EFIYREQKGTVRLWNVETN-----TSTVLIEGKKIESLRAIRYEISPDRE----YALFSYNVEPIYQHSYTGYYVLSKIP 99 (723)
T ss_dssp CBCCCCSSSCEEEBCGGGC-----CCEEEECTTTTTTTTCSEEEECTTSS----EEEEEESCCCCSSSCCCSEEEEEESS
T ss_pred cEEEEeCCCCEEEEECCCC-----cEEEEeccccccccccceEEECCCCC----EEEEEecCccceeecceeeEEEEECC
Confidence 3555578899999988765 33334544543 378888888776 89988764 788999998
Q ss_pred CCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecC-
Q 019405 84 NGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCAS- 162 (341)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~- 162 (341)
+++. ..+.... .+...+..+.|.+... .++.++. +.+.+|++.... ..++......
T Consensus 100 ~~~~-~~l~~~~-----~~~~~~~~~~~SPdG~--------~la~~~~-~~i~~~~~~~g~--------~~~~~~~~~~~ 156 (723)
T 1xfd_A 100 HGDP-QSLDPPE-----VSNAKLQYAGWGPKGQ--------QLIFIFE-NNIYYCAHVGKQ--------AIRVVSTGKEG 156 (723)
T ss_dssp SCCC-EECCCTT-----CCSCCCSBCCBCSSTT--------CEEEEET-TEEEEESSSSSC--------CEEEECCCBTT
T ss_pred CCce-EeccCCc-----cccccccccEECCCCC--------EEEEEEC-CeEEEEECCCCc--------eEEEecCCCCC
Confidence 8775 2232210 1222344555544444 6666654 789999876432 2222221111
Q ss_pred ----------------CceEEEEecCCCCEEEEeeCCC----------------------------------eEEEEECC
Q 019405 163 ----------------GTIAFSKVDISEKFSLFGGKGV----------------------------------EVNVWDLD 192 (341)
Q Consensus 163 ----------------~~i~~~~~~~~~~~l~~~~~d~----------------------------------~v~i~d~~ 192 (341)
..+..++|+|||+.|++++.++ .|++||+.
T Consensus 157 ~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~ 236 (723)
T 1xfd_A 157 VIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLN 236 (723)
T ss_dssp TEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESS
T ss_pred ceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECC
Confidence 1237899999999999887553 79999998
Q ss_pred CCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeC----CCeEEEEEcCCCCceeEEEEe-cCCCeE----E
Q 019405 193 KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN----DHQVRLYDTSAQRRPVMSFDF-RETPIK----A 263 (341)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~~~~~-~~~~v~----~ 263 (341)
+++....+..+.. ...+...+..++| +|+++++++... +..|++||+.+++. ...+.. +...+. .
T Consensus 237 ~~~~~~~l~~~~~---~~~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~~~~~ 310 (723)
T 1xfd_A 237 GPTHDLEMMPPDD---PRMREYYITMVKW--ATSTKVAVTWLNRAQNVSILTLCDATTGVC-TKKHEDESEAWLHRQNEE 310 (723)
T ss_dssp SSCCCEECCCCCC---GGGSSEEEEEEEE--SSSSEEEEEEEETTSCEEEEEEEETTTCCE-EEEEEEECSSCCCCCCCC
T ss_pred CCceeEEeeCCcc---CCCccceeEEEEE--eCCCeEEEEEEcCCCCeEEEEEEeCCCCcc-eEEEEeccCCEEeccCCC
Confidence 8775455543311 0112367899999 999998877653 35799999998764 444433 334443 7
Q ss_pred EEEcCCCceEEE--EeCCC------CEEEEE-CCCCe--EEeEEeccccCceeE-EEecCCCCEEEEEeCC---CcEEEE
Q 019405 264 VAEEPDSFNIYI--GNGSG------DLASVD-IRTGK--LLGCFIGKCSGSIRS-IARHPTLPIIASCGLD---SYLRFW 328 (341)
Q Consensus 264 ~~~~~~~~~l~~--g~~dg------~i~iwd-~~~~~--~~~~~~~~~~~~i~~-~~~~~~~~~l~s~~~d---g~v~iw 328 (341)
++|+|+|+.|+. +..++ .|++|| ...++ +...+..+ ...+.. ++|+|+|+.|+..+.+ +.+++|
T Consensus 311 ~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~ 389 (723)
T 1xfd_A 311 PVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG-DWDVTKILAYDEKGNKIYFLSTEDLPRRRQLY 389 (723)
T ss_dssp CEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS-SSCEEEEEEEETTTTEEEEEESSSCTTCCEEE
T ss_pred ceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecC-CeEEEeeeEEcCCCCEEEEEEcCCCCcceEEE
Confidence 899999987775 44566 577788 34444 14444433 334544 6999999988766555 789999
Q ss_pred EcCC
Q 019405 329 DIKT 332 (341)
Q Consensus 329 d~~~ 332 (341)
++..
T Consensus 390 ~~~~ 393 (723)
T 1xfd_A 390 SANT 393 (723)
T ss_dssp EECS
T ss_pred EEeC
Confidence 9864
No 143
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.89 E-value=1.3e-19 Score=152.93 Aligned_cols=263 Identities=11% Similarity=0.017 Sum_probs=179.1
Q ss_pred CCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCC-C
Q 019405 23 LGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQ-P 101 (341)
Q Consensus 23 ~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-~ 101 (341)
+|.|.+|+.... +.+..+.. ......+++++++. .++++...++.|.+||..+++.+..+......... .
T Consensus 68 ~~~v~~~d~~~~-----~~~~~~~~-~~~~~~~~~s~dg~---~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~ 138 (353)
T 3vgz_A 68 GGVVYRLDPVTL-----EVTQAIHN-DLKPFGATINNTTQ---TLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEV 138 (353)
T ss_dssp SEEEEEECTTTC-----CEEEEEEE-SSCCCSEEEETTTT---EEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSC
T ss_pred CccEEEEcCCCC-----eEEEEEec-CCCcceEEECCCCC---EEEEEecCCCEEEEEeCCCCeeEEEEecCCCcccccc
Confidence 445666665543 34444432 23356677777665 13445566899999999999887777653211000 0
Q ss_pred CCCceeeEeeeeccccccccccceeEEEc--ccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEE
Q 019405 102 EDDGIVGLHLFKRQREESSSRSRTLLTCT--TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLF 179 (341)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~ 179 (341)
......++.+.+... .++++. .++.+.+|++.... .+..+.. ....+..++++|+++++++
T Consensus 139 ~~~~~~~~~~s~dg~--------~l~~~~~~~~~~i~~~d~~~~~--------~~~~~~~-~~~~~~~~~~s~dg~~l~~ 201 (353)
T 3vgz_A 139 RPLQPRELVADDATN--------TVYISGIGKESVIWVVDGGNIK--------LKTAIQN-TGKMSTGLALDSEGKRLYT 201 (353)
T ss_dssp CCCEEEEEEEETTTT--------EEEEEEESSSCEEEEEETTTTE--------EEEEECC-CCTTCCCCEEETTTTEEEE
T ss_pred CCCCCceEEECCCCC--------EEEEEecCCCceEEEEcCCCCc--------eEEEecC-CCCccceEEECCCCCEEEE
Confidence 001244555544444 455544 47889999875332 3333321 3445788999999999999
Q ss_pred eeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeC-CCeEEEEEcCCCCceeEEEEecC
Q 019405 180 GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DHQVRLYDTSAQRRPVMSFDFRE 258 (341)
Q Consensus 180 ~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~ 258 (341)
+..++.|.+||+.+++....+...... +...+..++| +|+++++++++. ++.|.+||..+++. +..+....
T Consensus 202 ~~~~~~i~~~d~~~~~~~~~~~~~~~~-----~~~~~~~~~~--s~dg~~l~~~~~~~~~v~~~d~~~~~~-~~~~~~~~ 273 (353)
T 3vgz_A 202 TNADGELITIDTADNKILSRKKLLDDG-----KEHFFINISL--DTARQRAFITDSKAAEVLVVDTRNGNI-LAKVAAPE 273 (353)
T ss_dssp ECTTSEEEEEETTTTEEEEEEECCCSS-----SCCCEEEEEE--ETTTTEEEEEESSSSEEEEEETTTCCE-EEEEECSS
T ss_pred EcCCCeEEEEECCCCeEEEEEEcCCCC-----CCcccceEEE--CCCCCEEEEEeCCCCEEEEEECCCCcE-EEEEEcCC
Confidence 999999999999999887766542211 1244778899 889987776654 59999999988764 56665443
Q ss_pred CCeEEEEEcCCCceEEEEe-CCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCC
Q 019405 259 TPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDS 323 (341)
Q Consensus 259 ~~v~~~~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg 323 (341)
...++|+|+++++++++ .++.|.+||+.+++.+..+... ..+.+++|+|++++|+.+..++
T Consensus 274 --~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 274 --SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP--THPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp --CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC--SEEEEEEECTTSCEEEEEEECC
T ss_pred --CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC--CCCCeEEEcCCCCEEEEEEccc
Confidence 25799999998666555 6899999999999998888764 5789999999999777766553
No 144
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=1.1e-20 Score=174.42 Aligned_cols=277 Identities=13% Similarity=0.048 Sum_probs=177.1
Q ss_pred CCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCC-----CcchheeeccCC
Q 019405 22 SLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN-----GDLRVAISNAGD 96 (341)
Q Consensus 22 ~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~-----~~~~~~~~~~~~ 96 (341)
.++.+.+|++... ++. .+..+...+..++||++++ +|+++ .|+.|++|++.+ ++..........
T Consensus 99 ~~~~i~~~d~~~~-----~~~-~l~~~~~~~~~~~~SpdG~----~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~ 167 (706)
T 2z3z_A 99 TQGGLVGFDMLAR-----KVT-YLFDTNEETASLDFSPVGD----RVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTE 167 (706)
T ss_dssp ETTEEEEEETTTT-----EEE-EEECCTTCCTTCEECTTSS----EEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBT
T ss_pred ECCEEEEEECCCC-----ceE-EccCCcccccCCcCCCCCC----EEEEE-ECCeEEEEecCcccccCCCcEEeccCCCC
Confidence 4577788887654 222 2334556677788887766 78885 689999999987 665443322110
Q ss_pred CC------CCCCCCceeeEeeeeccccccccccceeEEEc---------------------------------ccceeEE
Q 019405 97 SG------AQPEDDGIVGLHLFKRQREESSSRSRTLLTCT---------------------------------TKGKASM 137 (341)
Q Consensus 97 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---------------------------------~~g~~~i 137 (341)
.. ...+...+.++.|.+... .|+.++ .+..+.+
T Consensus 168 ~~~~g~~~~~ee~~~~~~~~~SpDg~--------~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~ 239 (706)
T 2z3z_A 168 TLVYGQAVHQREFGIEKGTFWSPKGS--------CLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGI 239 (706)
T ss_dssp TEEESSCCGGGCTTCCCSEEECTTSS--------EEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEE
T ss_pred CeEcccchhhhhcCCCceEEECCCCC--------EEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEE
Confidence 00 000001123444444433 666665 3355666
Q ss_pred EEeeecccccccCCceEEEEE-eecCCceEEEEecCCCCEEEEeeCCC-----eEEEEECCCCceeeecCCCCCCccCcc
Q 019405 138 RSIEVTKVSAESSCSTVKSWN-VCASGTIAFSKVDISEKFSLFGGKGV-----EVNVWDLDKCEKIWTAKPPPKNSLGIF 211 (341)
Q Consensus 138 ~~~~~~~~~~~~~~~~v~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d~-----~v~i~d~~~~~~~~~~~~~~~~~~~~~ 211 (341)
|++.... ...+.. ..+...+..++|+||++.|++++.++ .|++||+.+++....+.......
T Consensus 240 ~d~~~~~--------~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~---- 307 (706)
T 2z3z_A 240 YHLATGK--------TVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKH---- 307 (706)
T ss_dssp EETTTTE--------EEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSS----
T ss_pred EECCCCc--------eEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCC----
Confidence 6653221 111111 12345688999999999999887775 89999999884333322111000
Q ss_pred CCeeeeEEEEEecC--CCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEE-EEEcCCCceEEEEeC-CC----CEE
Q 019405 212 TPTWFTSAAFLSID--DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKA-VAEEPDSFNIYIGNG-SG----DLA 283 (341)
Q Consensus 212 ~~~~v~~~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~g~~-dg----~i~ 283 (341)
....+..++| +| ++++++++..|+.+++|++......+..+..+...+.. ++|+|+++.|+.++. ++ .|+
T Consensus 308 ~~~~~~~~~~--sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~ 385 (706)
T 2z3z_A 308 YVEPLHPLTF--LPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFY 385 (706)
T ss_dssp CCCCCSCCEE--CTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEE
T ss_pred eECccCCcee--ecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEE
Confidence 0012456789 88 99999999999999999887322336677777777877 799999987766554 44 677
Q ss_pred EEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCC----CcEEEEEcCCCc
Q 019405 284 SVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLD----SYLRFWDIKTRQ 334 (341)
Q Consensus 284 iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d----g~v~iwd~~~~~ 334 (341)
.||+.+++ ...+. + ...+.+++|+|+|++|+..+.+ +.|++||+.+++
T Consensus 386 ~~d~~~~~-~~~l~-~-~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 386 CIDIKGGK-TKDLT-P-ESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp EEETTCCC-CEESC-C-SSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred EEEcCCCC-ceecc-C-CCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 77887765 33333 3 5678999999999988776544 469999999876
No 145
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.88 E-value=1.2e-20 Score=173.96 Aligned_cols=274 Identities=11% Similarity=0.060 Sum_probs=179.2
Q ss_pred eeeeecCCCCeEEEEEecCccCccceeeeccC--------------CCCCceeEEEeccCCCCCceEEEEccCCeEEEee
Q 019405 16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGD--------------PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILN 81 (341)
Q Consensus 16 ~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~--------------~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~ 81 (341)
+++..+.+| | +|++.+... ..+.+..... +...+..++|+++ . .++.+ .++.|++||
T Consensus 37 ~~~~~~~~~-i-~~d~~tg~~-~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~----~~~~~-~~~~i~~~d 107 (706)
T 2z3z_A 37 NYVFIEGDD-L-VFNKANGKS-AQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-G----LVVLF-TQGGLVGFD 107 (706)
T ss_dssp EEEEEETTE-E-EEEC--------CEEEEHHHHHTTC-----------CCCEEEEETTT-T----EEEEE-ETTEEEEEE
T ss_pred eEEEEeCCc-E-EEECCCCcE-eeEEeechhHhhhhccchhccccccccCceeEEECCC-C----eEEEE-ECCEEEEEE
Confidence 566677777 7 888776521 0012111100 1146888889887 4 45555 469999999
Q ss_pred CCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeee-----cccccccCCceEEE
Q 019405 82 PLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEV-----TKVSAESSCSTVKS 156 (341)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~-----~~~~~~~~~~~v~~ 156 (341)
+.+++....... ...+..+.|.+... .++. ..++.+.+|++.. ... .++
T Consensus 108 ~~~~~~~~l~~~---------~~~~~~~~~SpdG~--------~la~-~~~~~i~v~~~~~~~~~~g~~--------~~~ 161 (706)
T 2z3z_A 108 MLARKVTYLFDT---------NEETASLDFSPVGD--------RVAY-VRNHNLYIARGGKLGEGMSRA--------IAV 161 (706)
T ss_dssp TTTTEEEEEECC---------TTCCTTCEECTTSS--------EEEE-EETTEEEEEECBCTTSCCCCC--------EES
T ss_pred CCCCceEEccCC---------cccccCCcCCCCCC--------EEEE-EECCeEEEEecCcccccCCCc--------EEe
Confidence 988765433221 13344455544433 5555 4789999999875 321 111
Q ss_pred EEeec-------------CCceEEEEecCCCCEEEEee---------------------------------CCCeEEEEE
Q 019405 157 WNVCA-------------SGTIAFSKVDISEKFSLFGG---------------------------------KGVEVNVWD 190 (341)
Q Consensus 157 ~~~~~-------------~~~i~~~~~~~~~~~l~~~~---------------------------------~d~~v~i~d 190 (341)
..... ...+.++.|+|||++|++++ .+..|++||
T Consensus 162 ~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d 241 (706)
T 2z3z_A 162 TIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYH 241 (706)
T ss_dssp CSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEE
T ss_pred ccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEE
Confidence 11111 11257899999999999987 446799999
Q ss_pred CCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCC-----eEEEEEcCCCCceeEEEEe-cCC---Ce
Q 019405 191 LDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH-----QVRLYDTSAQRRPVMSFDF-RET---PI 261 (341)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~-~~~---~v 261 (341)
+.+++......... +...+.+++| +|++++|++++.++ .|++||+.+++........ +.. .+
T Consensus 242 ~~~~~~~~~~~~~~-------~~~~~~~~~~--spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~ 312 (706)
T 2z3z_A 242 LATGKTVYLQTGEP-------KEKFLTNLSW--SPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPL 312 (706)
T ss_dssp TTTTEEEECCCCSC-------TTCEEEEEEE--CTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCC
T ss_pred CCCCceEeeccCCC-------CceeEeeEEE--ECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECcc
Confidence 99887654332211 2356899999 99999999988776 8999999987332222222 222 24
Q ss_pred EEEEEcC--CCceEEEEeCCCCEEEEECC-CCeEEeEEeccccCceeE-EEecCCCCEEEEEeC-CC----cEEEEEcCC
Q 019405 262 KAVAEEP--DSFNIYIGNGSGDLASVDIR-TGKLLGCFIGKCSGSIRS-IARHPTLPIIASCGL-DS----YLRFWDIKT 332 (341)
Q Consensus 262 ~~~~~~~--~~~~l~~g~~dg~i~iwd~~-~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~s~~~-dg----~v~iwd~~~ 332 (341)
..++|+| +|+++++++.++.++||++. +++.+..+..+ ...+.. ++|+|+++.|+.++. ++ .|..||+.+
T Consensus 313 ~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~-~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~ 391 (706)
T 2z3z_A 313 HPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKG-EWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKG 391 (706)
T ss_dssp SCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCS-SSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTC
T ss_pred CCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCC-CeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCC
Confidence 6789999 99999999999999999876 66777777766 667776 799999997765554 44 677778776
Q ss_pred Cc
Q 019405 333 RQ 334 (341)
Q Consensus 333 ~~ 334 (341)
++
T Consensus 392 ~~ 393 (706)
T 2z3z_A 392 GK 393 (706)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 146
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.88 E-value=4.1e-20 Score=171.42 Aligned_cols=242 Identities=7% Similarity=-0.012 Sum_probs=165.1
Q ss_pred ceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCc--chheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEE
Q 019405 52 NCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD--LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC 129 (341)
Q Consensus 52 ~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (341)
+..++||+|++ +|++++. +.|++||+.++. ....+.. +...+..+.|.+... .++.+
T Consensus 111 v~~~~~SpDg~----~l~~~~~-~~i~~~d~~~~~~~~~~~l~~--------~~~~~~~~~~SPDG~--------~la~~ 169 (741)
T 2ecf_A 111 IVDYQWSPDAQ----RLLFPLG-GELYLYDLKQEGKAAVRQLTH--------GEGFATDAKLSPKGG--------FVSFI 169 (741)
T ss_dssp SCCCEECTTSS----EEEEEET-TEEEEEESSSCSTTSCCBCCC--------SSSCEEEEEECTTSS--------EEEEE
T ss_pred cceeEECCCCC----EEEEEeC-CcEEEEECCCCCcceEEEccc--------CCcccccccCCCCCC--------EEEEE
Confidence 56677777666 8888875 999999998772 2233332 234566666655444 56665
Q ss_pred cccceeEEEEeeecccccccCCceEEEEEeecCC----------------ceEEEEecCCCCEEEEeeCCC---------
Q 019405 130 TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASG----------------TIAFSKVDISEKFSLFGGKGV--------- 184 (341)
Q Consensus 130 ~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~----------------~i~~~~~~~~~~~l~~~~~d~--------- 184 (341)
+ ++.+.+|++..... .++.. .... .+..+.|+|||++|++++.|+
T Consensus 170 ~-~~~i~~~d~~~g~~--------~~~~~-~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~ 239 (741)
T 2ecf_A 170 R-GRNLWVIDLASGRQ--------MQLTA-DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRY 239 (741)
T ss_dssp E-TTEEEEEETTTTEE--------EECCC-CCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEE
T ss_pred e-CCcEEEEecCCCCE--------EEecc-CCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecC
Confidence 5 56899998754321 11111 1111 247799999999999987765
Q ss_pred ------------------------eEEEEECCC-CceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeC----
Q 019405 185 ------------------------EVNVWDLDK-CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN---- 235 (341)
Q Consensus 185 ------------------------~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---- 235 (341)
.|++||+.+ ++........ .+...+..++| | ++++|++++.
T Consensus 240 ~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~-------~~~~~~~~~~~-p--Dg~~l~~~~~~~~~ 309 (741)
T 2ecf_A 240 EVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGK-------EQDIYLARVNW-R--DPQHLSFQRQSRDQ 309 (741)
T ss_dssp EECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCS-------CSSEEEEEEEE-E--ETTEEEEEEEETTS
T ss_pred CCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCC-------CcceEEEEEEe-C--CCCEEEEEEecccC
Confidence 788999987 7654432221 13466888888 5 7888887654
Q ss_pred -CCeEEEEEcCCCCceeEEEEecCC----CeEEEEEcCCCceEEEEeCCCCEEEEECC-CCeEEeEEeccccCceeEE-E
Q 019405 236 -DHQVRLYDTSAQRRPVMSFDFRET----PIKAVAEEPDSFNIYIGNGSGDLASVDIR-TGKLLGCFIGKCSGSIRSI-A 308 (341)
Q Consensus 236 -d~~i~iwd~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~g~~dg~i~iwd~~-~~~~~~~~~~~~~~~i~~~-~ 308 (341)
+..|++||+.+++. ...+..+.. .+..++|+|+|+++++++.||.++||.+. +++ ...+..+ ...+..+ .
T Consensus 310 ~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~-~~~v~~~~~ 386 (741)
T 2ecf_A 310 KKLDLVEVTLASNQQ-RVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHG-NWSVDELLA 386 (741)
T ss_dssp SEEEEEEEETTTCCE-EEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCS-SSCEEEEEE
T ss_pred CeEEEEEEECCCCce-EEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeec-ceEEEeEeE
Confidence 56899999998764 455554443 45689999999999999999988887665 345 6667766 6778887 5
Q ss_pred ecCCCCEEE-EEeCCC--cEEEEEcCC-Cceee
Q 019405 309 RHPTLPIIA-SCGLDS--YLRFWDIKT-RQLLS 337 (341)
Q Consensus 309 ~~~~~~~l~-s~~~dg--~v~iwd~~~-~~~~~ 337 (341)
|+|+++.|+ +++.++ .++||++.. ++.+.
T Consensus 387 ~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~ 419 (741)
T 2ecf_A 387 VDEKAGLAYFRAGIESARESQIYAVPLQGGQPQ 419 (741)
T ss_dssp EETTTTEEEEEECSSCTTCBEEEEEETTCCCCE
T ss_pred EeCCCCEEEEEEeCCCCceEEEEEEEcCCCCee
Confidence 999999765 455555 899999864 44333
No 147
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=1.1e-19 Score=152.73 Aligned_cols=230 Identities=11% Similarity=0.082 Sum_probs=151.8
Q ss_pred EEEEccCCeEEEeeCCC-CcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEccc-ceeEEEEeeeccc
Q 019405 68 LAVARKNGLTDILNPLN-GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK-GKASMRSIEVTKV 145 (341)
Q Consensus 68 l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~i~~~~~~~~ 145 (341)
+++++.|+.|++|++.. ++. ..+... .+...+.++.+.+... .+++++.+ +.+.+|++...
T Consensus 8 ~~~~~~~~~v~~~~~~~~~~~-~~~~~~------~~~~~~~~~~~spdg~--------~l~~~~~~~~~v~~~~~~~~-- 70 (343)
T 1ri6_A 8 YIASPESQQIHVWNLNHEGAL-TLTQVV------DVPGQVQPMVVSPDKR--------YLYVGVRPEFRVLAYRIAPD-- 70 (343)
T ss_dssp EEEEGGGTEEEEEEECTTSCE-EEEEEE------ECSSCCCCEEECTTSS--------EEEEEETTTTEEEEEEECTT--
T ss_pred EEeCCCCCeEEEEEECCCCcE-EEeeeE------ecCCCCceEEECCCCC--------EEEEeecCCCeEEEEEecCC--
Confidence 44457899999999853 322 112111 1224555666655444 67766665 99999998621
Q ss_pred ccccCCceEE-EEEeecCCceEEEEecCCCCEEEEeeC-CCeEEEEECC---CCceeeecCCCCCCccCccCCeeeeEEE
Q 019405 146 SAESSCSTVK-SWNVCASGTIAFSKVDISEKFSLFGGK-GVEVNVWDLD---KCEKIWTAKPPPKNSLGIFTPTWFTSAA 220 (341)
Q Consensus 146 ~~~~~~~~v~-~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~v~i~d~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 220 (341)
.+... +-.......+..++|+|+++++++++. ++.|.+||+. +.+....+... ..+.+++
T Consensus 71 -----~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~----------~~~~~~~ 135 (343)
T 1ri6_A 71 -----DGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL----------DGCHSAN 135 (343)
T ss_dssp -----TCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC----------TTBCCCE
T ss_pred -----CCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC----------CCceEEE
Confidence 11111 222222347889999999998876654 8899999994 33344444332 2377889
Q ss_pred EEecCCCCEEEEEe-CCCeEEEEEcCC-CCce-eE--EEEe-cCCCeEEEEEcCCCceEEEEe-CCCCEEEEECCC--Ce
Q 019405 221 FLSIDDHRKFVAGT-NDHQVRLYDTSA-QRRP-VM--SFDF-RETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRT--GK 291 (341)
Q Consensus 221 ~~~~~~~~~l~~~~-~d~~i~iwd~~~-~~~~-~~--~~~~-~~~~v~~~~~~~~~~~l~~g~-~dg~i~iwd~~~--~~ 291 (341)
| +|+++++++++ .++.|++||+.+ ++.. +. .+.. ....+..++|+|+++++++++ .++.|.+||+.. ++
T Consensus 136 ~--s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~ 213 (343)
T 1ri6_A 136 I--SPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGN 213 (343)
T ss_dssp E--CTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSC
T ss_pred E--CCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCc
Confidence 9 89999888877 899999999987 4321 11 2232 334788899999999776554 789999999953 43
Q ss_pred E--EeEEecc-----ccCceeEEEecCCCCEEE-EEeCCCcEEEEEcC
Q 019405 292 L--LGCFIGK-----CSGSIRSIARHPTLPIIA-SCGLDSYLRFWDIK 331 (341)
Q Consensus 292 ~--~~~~~~~-----~~~~i~~~~~~~~~~~l~-s~~~dg~v~iwd~~ 331 (341)
. ...+... ....+..++|+|++++|+ +...++.|++||+.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~ 261 (343)
T 1ri6_A 214 IECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVS 261 (343)
T ss_dssp CEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEc
Confidence 2 2233211 023566899999998776 45578999999998
No 148
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.88 E-value=9.7e-21 Score=175.63 Aligned_cols=257 Identities=13% Similarity=0.044 Sum_probs=175.6
Q ss_pred CCCceeEEEeccCCCCCceEEEEcc-CC-----eEEEeeCCCCcchheeeccCCCC----CCCC------------CCce
Q 019405 49 HSSNCVLAASIDDSQNDPLLAVARK-NG-----LTDILNPLNGDLRVAISNAGDSG----AQPE------------DDGI 106 (341)
Q Consensus 49 ~~~~~~~~~s~~~~~~~~~l~~~~~-dg-----~i~iw~~~~~~~~~~~~~~~~~~----~~~~------------~~~~ 106 (341)
...+..++||+|++ +|++++. |+ .|++||+.+++....+..+.... .+.. ...+
T Consensus 36 ~~~~~~~~~SpdG~----~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 111 (741)
T 2ecf_A 36 GPTLMKPKVAPDGS----RVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGI 111 (741)
T ss_dssp CCCCEEEEECTTSS----EEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEES
T ss_pred CCCCCCceEecCCC----EEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCc
Confidence 45677888887776 8999887 88 89999999887765554421110 0000 0124
Q ss_pred eeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeE
Q 019405 107 VGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEV 186 (341)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v 186 (341)
..+.|.+... .+++++. +.+.+|++...... .++.. ..+...+..++|+|||++|+.++. +.|
T Consensus 112 ~~~~~SpDg~--------~l~~~~~-~~i~~~d~~~~~~~------~~~~l-~~~~~~~~~~~~SPDG~~la~~~~-~~i 174 (741)
T 2ecf_A 112 VDYQWSPDAQ--------RLLFPLG-GELYLYDLKQEGKA------AVRQL-THGEGFATDAKLSPKGGFVSFIRG-RNL 174 (741)
T ss_dssp CCCEECTTSS--------EEEEEET-TEEEEEESSSCSTT------SCCBC-CCSSSCEEEEEECTTSSEEEEEET-TEE
T ss_pred ceeEECCCCC--------EEEEEeC-CcEEEEECCCCCcc------eEEEc-ccCCcccccccCCCCCCEEEEEeC-CcE
Confidence 4455544443 6666665 99999998654100 11111 123467899999999999998875 589
Q ss_pred EEEECCCCceeeecCCCCCCccCccCC--------eeeeEEEEEecCCCCEEEEEeCCC---------------------
Q 019405 187 NVWDLDKCEKIWTAKPPPKNSLGIFTP--------TWFTSAAFLSIDDHRKFVAGTNDH--------------------- 237 (341)
Q Consensus 187 ~i~d~~~~~~~~~~~~~~~~~~~~~~~--------~~v~~~~~~~~~~~~~l~~~~~d~--------------------- 237 (341)
++||+.+++........... ...... ..+..++| +|++++|++++.|+
T Consensus 175 ~~~d~~~g~~~~~~~~~~~~-~~~g~~~~v~~~~~~~~~~~~~--SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~ 251 (741)
T 2ecf_A 175 WVIDLASGRQMQLTADGSTT-IGNGIAEFVADEEMDRHTGYWW--APDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQ 251 (741)
T ss_dssp EEEETTTTEEEECCCCCCSS-EEESCCCHHHHHHSCCCCSEEE--CTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEE
T ss_pred EEEecCCCCEEEeccCCccc-eeccccceeeeeccccccceEE--CCCCCEEEEEEEcCCCCceEecCCCCCCcccceEe
Confidence 99999987765543332210 000000 11467899 99999999988765
Q ss_pred ------------eEEEEEcCC-CCceeEEEE--ecCCCeEEEEEcCCCceEEEEeC-----CCCEEEEECCCCeEEeEEe
Q 019405 238 ------------QVRLYDTSA-QRRPVMSFD--FRETPIKAVAEEPDSFNIYIGNG-----SGDLASVDIRTGKLLGCFI 297 (341)
Q Consensus 238 ------------~i~iwd~~~-~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~g~~-----dg~i~iwd~~~~~~~~~~~ 297 (341)
.|++||+.+ ++. ..... .|...+..++| |+|++|++++. +..|++||+.+++....+.
T Consensus 252 ~~~~~g~~~~~~~l~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~ 329 (741)
T 2ecf_A 252 RYPAAGDANVQVKLGVISPAEQAQT-QWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAH 329 (741)
T ss_dssp ECCBTTSCCCEEEEEEECSSTTCCC-EEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEE
T ss_pred ecCCCCCCCCeeEEEEEECCCCCce-EEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEE
Confidence 789999987 653 22221 36677899999 99999987654 5679999999998877776
Q ss_pred ccccC---ceeEEEecCCCCEEEEEeCCCcEEEEEcC
Q 019405 298 GKCSG---SIRSIARHPTLPIIASCGLDSYLRFWDIK 331 (341)
Q Consensus 298 ~~~~~---~i~~~~~~~~~~~l~s~~~dg~v~iwd~~ 331 (341)
.+... .+..++|+|+|+++++++.||.++||.++
T Consensus 330 ~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~ 366 (741)
T 2ecf_A 330 ETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRID 366 (741)
T ss_dssp EECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEEC
T ss_pred cCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEc
Confidence 65222 45689999999999999999988888765
No 149
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.87 E-value=1.1e-19 Score=174.34 Aligned_cols=271 Identities=11% Similarity=-0.024 Sum_probs=193.1
Q ss_pred eeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCC
Q 019405 17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGD 96 (341)
Q Consensus 17 ~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 96 (341)
+++++.+|.+++|.+... ++ ....+..+. .+...+|++++. +|+++ .++.|.+|++...+ +..+.....
T Consensus 217 ~~~~~~dg~~~l~~~~~~-g~---~~~~l~~~~-~~~~~~~SpDG~----~la~~-~~~~i~~~d~~~~~-l~~l~~~~~ 285 (1045)
T 1k32_A 217 YFITDIDGFGQIYSTDLD-GK---DLRKHTSFT-DYYPRHLNTDGR----RILFS-KGGSIYIFNPDTEK-IEKIEIGDL 285 (1045)
T ss_dssp EEEECTTSSCEEEEEETT-SC---SCEECCCCC-SSCEEEEEESSS----CEEEE-ETTEEEEECTTTCC-EEECCCCCC
T ss_pred EEEEeccCceEEEEEeCC-CC---cceEecCCC-CcceeeEcCCCC----EEEEE-eCCEEEEecCCceE-eeeeccCcc
Confidence 345677889999988754 12 122343443 355668887766 78877 59999999994433 223332100
Q ss_pred CC---CCCCCCceeeEeee-eccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCC-ceEEEEec
Q 019405 97 SG---AQPEDDGIVGLHLF-KRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASG-TIAFSKVD 171 (341)
Q Consensus 97 ~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~-~i~~~~~~ 171 (341)
.. ...+...+..+.+. +... .++.++ ++.+.+|++... ...... .+.. .+..++|+
T Consensus 286 ~~~~~~~~~~~~v~~~~~S~pdG~--------~la~~~-~~~i~~~~~~~~---------~~~~~~-~~~~~~~~~~~~s 346 (1045)
T 1k32_A 286 ESPEDRIISIPSKFAEDFSPLDGD--------LIAFVS-RGQAFIQDVSGT---------YVLKVP-EPLRIRYVRRGGD 346 (1045)
T ss_dssp CBCCSEEEECGGGGEEEEEECGGG--------CEEEEE-TTEEEEECTTSS---------BEEECS-CCSCEEEEEECSS
T ss_pred cccccccccccccceeeecCCCCC--------EEEEEE-cCEEEEEcCCCC---------ceEEcc-CCCcceEEeeeEc
Confidence 00 00012346666665 4444 566665 788888886432 222221 2344 78899999
Q ss_pred CCCCEEEEeeCCCeEE-EEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCce
Q 019405 172 ISEKFSLFGGKGVEVN-VWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP 250 (341)
Q Consensus 172 ~~~~~l~~~~~d~~v~-i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 250 (341)
+++.+++++.++.+. +||+.+++... +..+ ...+..++| +|++++|++++.++.|++||+.+++.
T Consensus 347 -dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~---------~~~~~~~~~--SpDG~~la~~~~~~~v~~~d~~tg~~- 412 (1045)
T 1k32_A 347 -TKVAFIHGTREGDFLGIYDYRTGKAEK-FEEN---------LGNVFAMGV--DRNGKFAVVANDRFEIMTVDLETGKP- 412 (1045)
T ss_dssp -SEEEEEEEETTEEEEEEEETTTCCEEE-CCCC---------CCSEEEEEE--CTTSSEEEEEETTSEEEEEETTTCCE-
T ss_pred -CCCeEEEEECCCceEEEEECCCCCceE-ecCC---------ccceeeeEE--CCCCCEEEEECCCCeEEEEECCCCce-
Confidence 999999988888898 99998765433 2222 245889999 99999999999999999999998764
Q ss_pred eEEEEecCCCeEEEEEcCCCceEEEEeCCC----------CEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEe
Q 019405 251 VMSFDFRETPIKAVAEEPDSFNIYIGNGSG----------DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG 320 (341)
Q Consensus 251 ~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg----------~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 320 (341)
......|...+..++|+|+|++|++++.++ .|++||+.+++ +..+..| ...+..++|+|+|++|+.++
T Consensus 413 ~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~-~~~~~~~~~spdG~~l~~~s 490 (1045)
T 1k32_A 413 TVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTE-NSHDYAPAFDADSKNLYYLS 490 (1045)
T ss_dssp EEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCS-SSBEEEEEECTTSCEEEEEE
T ss_pred EEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCC-CcccCCceEcCCCCEEEEEe
Confidence 555667888899999999999998887654 89999999887 5666666 77889999999999999999
Q ss_pred CCCcEEEEEcCCC
Q 019405 321 LDSYLRFWDIKTR 333 (341)
Q Consensus 321 ~dg~v~iwd~~~~ 333 (341)
.++...+|+....
T Consensus 491 ~~~~~~~~~~~~~ 503 (1045)
T 1k32_A 491 YRSLDPSPDRVVL 503 (1045)
T ss_dssp SCCCCCEECSSSS
T ss_pred cccCCcCcchhcc
Confidence 9888888886544
No 150
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.87 E-value=5.3e-21 Score=172.51 Aligned_cols=239 Identities=12% Similarity=-0.001 Sum_probs=168.5
Q ss_pred CCCCceeEEEeccCCCCCceEEEEcc-CCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccccccccee
Q 019405 48 PHSSNCVLAASIDDSQNDPLLAVARK-NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL 126 (341)
Q Consensus 48 ~~~~~~~~~~s~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 126 (341)
...++..++|++|++ +||+++. ||+++||++++++.. .+..+ +...+....|.+. . .+
T Consensus 20 ~~~~~~~~~~~~DG~----~la~~s~~~g~~~lw~~~~g~~~-~lt~~-------~~~~~~~~~~spd-~--------~l 78 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGD----KLLVVGFSEGSVNAYLYDGGETV-KLNRE-------PINSVLDPHYGVG-R--------VI 78 (582)
T ss_dssp HHSCEEEEEEEETTT----EEEEEEEETTEEEEEEEETTEEE-ECCSS-------CCSEECEECTTCS-E--------EE
T ss_pred hccchheeecCCCCC----eEEEEEccCCceeEEEEcCCCcE-eeecc-------cccccccccCCCC-e--------EE
Confidence 356789999998877 7988776 999999998655443 33321 1124444554432 3 66
Q ss_pred EEEcc---cceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCC--EEEEeeCCCeEEEEECCCCceeeecC
Q 019405 127 LTCTT---KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK--FSLFGGKGVEVNVWDLDKCEKIWTAK 201 (341)
Q Consensus 127 ~~~~~---~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~ 201 (341)
+++.. +....+|.+.... ++... .......+...+|+|+++ .+++++.+ .+.+||+.+++......
T Consensus 79 ~~~~~~~g~~~~~l~~~~~~~------~g~~~--~l~~~~~~~~~~~s~dg~~~~~~s~~~~-~~~l~d~~~g~~~~l~~ 149 (582)
T 3o4h_A 79 LVRDVSKGAEQHALFKVNTSR------PGEEQ--RLEAVKPMRILSGVDTGEAVVFTGATED-RVALYALDGGGLRELAR 149 (582)
T ss_dssp EEEECSTTSCCEEEEEEETTS------TTCCE--ECTTSCSBEEEEEEECSSCEEEEEECSS-CEEEEEEETTEEEEEEE
T ss_pred EEeccCCCCcceEEEEEeccC------CCccc--cccCCCCceeeeeCCCCCeEEEEecCCC-CceEEEccCCcEEEeec
Confidence 66654 4455777765411 11111 112223344567777775 34444444 55699998886554332
Q ss_pred CCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCC----CeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEe
Q 019405 202 PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND----HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN 277 (341)
Q Consensus 202 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~ 277 (341)
.+ . .+++| +|+|++|++++.+ +.|++||+.+++ ...+..|...+..++|+|||+.|+++.
T Consensus 150 ~~----------~--~~~~~--spDG~~la~~~~~~~~~~~i~~~d~~~g~--~~~l~~~~~~~~~~~~SpDG~~l~~~~ 213 (582)
T 3o4h_A 150 LP----------G--FGFVS--DIRGDLIAGLGFFGGGRVSLFTSNLSSGG--LRVFDSGEGSFSSASISPGMKVTAGLE 213 (582)
T ss_dssp ES----------S--CEEEE--EEETTEEEEEEEEETTEEEEEEEETTTCC--CEEECCSSCEEEEEEECTTSCEEEEEE
T ss_pred CC----------C--ceEEE--CCCCCEEEEEEEcCCCCeEEEEEcCCCCC--ceEeecCCCccccceECCCCCEEEEcc
Confidence 21 1 56788 8999999988877 789999998765 456777888899999999999999888
Q ss_pred CCC--CEEEEECCCCeEEeEEeccccCceeEEE--------ecCCCCEEEEEeCCCcEEEEEcCCCcee
Q 019405 278 GSG--DLASVDIRTGKLLGCFIGKCSGSIRSIA--------RHPTLPIIASCGLDSYLRFWDIKTRQLL 336 (341)
Q Consensus 278 ~dg--~i~iwd~~~~~~~~~~~~~~~~~i~~~~--------~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 336 (341)
.++ .|++||+.+++.. .+..+ ...+..++ |+|||.++++++.|+.+++|++ |+.+
T Consensus 214 ~~~~~~i~~~d~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~ 278 (582)
T 3o4h_A 214 TAREARLVTVDPRDGSVE-DLELP-SKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERV 278 (582)
T ss_dssp CSSCEEEEEECTTTCCEE-ECCCS-CSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEE
T ss_pred CCCeeEEEEEcCCCCcEE-EccCC-CcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCee
Confidence 888 8999999998887 66665 66777777 9999999999999999999999 6655
No 151
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.87 E-value=4.8e-20 Score=154.49 Aligned_cols=233 Identities=12% Similarity=0.087 Sum_probs=166.7
Q ss_pred ceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCC-ceeeEeeeeccccccccccceeEEEcccceeEEEEeeecc
Q 019405 66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDD-GIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK 144 (341)
Q Consensus 66 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~ 144 (341)
++|++++.++.|++||+.+++.+..+... ... .+..+.+.+.... .+++...++.+.+|++....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~-------~~~~~~~~~~~s~dg~~-------l~v~~~~~~~v~~~d~~~~~ 67 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIA-------DAGPTPMVPMVAPGGRI-------AYATVNKSESLVKIDLVTGE 67 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECT-------TCTTCCCCEEECTTSSE-------EEEEETTTTEEEEEETTTCC
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcC-------CCCCCccceEEcCCCCE-------EEEEeCCCCeEEEEECCCCC
Confidence 47899999999999999998887776642 101 2445555444431 45666778999999975432
Q ss_pred cccccCCceEEEEEeec----CCceEEEEecCCCCEEEEee------------CCCeEEEEECCCCceeeecCCCCCCcc
Q 019405 145 VSAESSCSTVKSWNVCA----SGTIAFSKVDISEKFSLFGG------------KGVEVNVWDLDKCEKIWTAKPPPKNSL 208 (341)
Q Consensus 145 ~~~~~~~~~v~~~~~~~----~~~i~~~~~~~~~~~l~~~~------------~d~~v~i~d~~~~~~~~~~~~~~~~~~ 208 (341)
.+..+.... ...+..++|+|++++++++. .++.|.+||+.+++....+...
T Consensus 68 --------~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~----- 134 (337)
T 1pby_B 68 --------TLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP----- 134 (337)
T ss_dssp --------EEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-----
T ss_pred --------eEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC-----
Confidence 333343322 12567889999999988886 5789999999988877666542
Q ss_pred CccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCC--------
Q 019405 209 GIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG-------- 280 (341)
Q Consensus 209 ~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg-------- 280 (341)
..+.+++| +|++++|+++ ++.|++||+.+++. +..+..+.. ...+.|+|++..++..+..+
T Consensus 135 -----~~~~~~~~--s~dg~~l~~~--~~~i~~~d~~~~~~-~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~ 203 (337)
T 1pby_B 135 -----RQITMLAW--ARDGSKLYGL--GRDLHVMDPEAGTL-VEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFY 203 (337)
T ss_dssp -----SSCCCEEE--CTTSSCEEEE--SSSEEEEETTTTEE-EEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEE
T ss_pred -----CCcceeEE--CCCCCEEEEe--CCeEEEEECCCCcE-eeeeecccc-CCCceeCCCccEEeeeccCCCceeeeee
Confidence 22667888 8999988887 68899999998653 555544331 11337899998776554332
Q ss_pred ----------------CEEEEECCCCeEE-eEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 281 ----------------DLASVDIRTGKLL-GCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 281 ----------------~i~iwd~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
.|.+||+.+++.. ..+..+ ...+.+++|+|++++++++ ++.|++||+.+++.+..+
T Consensus 204 ~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~ 276 (337)
T 1pby_B 204 TARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIM-DVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRV 276 (337)
T ss_dssp EEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEEC-SSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEE
T ss_pred ccccccccccccccccceEEEeCCCCCceEeecCCC-CCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCccee
Confidence 4689999998775 223333 5678899999999998888 789999999999877654
No 152
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.87 E-value=1.4e-21 Score=169.36 Aligned_cols=170 Identities=10% Similarity=0.048 Sum_probs=130.6
Q ss_pred CceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCC------CCccCccCCeeeeEEEEEecCCCCEEE----E
Q 019405 163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP------KNSLGIFTPTWFTSAAFLSIDDHRKFV----A 232 (341)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~l~----~ 232 (341)
..+..+++++++.++++++.++ +++|+.............. .....+.+...|.+++| +|++++|+ +
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--spdg~~lav~~~s 113 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLAL--SCDNLTLSACMMS 113 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEE--CTTSCEEEEEEEE
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEE--cCCCCEEEEEEec
Confidence 3577889999999999999887 8998764211100000000 00011223456999999 89999999 7
Q ss_pred EeCCCeEEEEEcCCC-----C--ce---eEEEEecCCCeEEEEEcCC-CceEEEEeCCCCEEEEECCCCeEEeEEecccc
Q 019405 233 GTNDHQVRLYDTSAQ-----R--RP---VMSFDFRETPIKAVAEEPD-SFNIYIGNGSGDLASVDIRTGKLLGCFIGKCS 301 (341)
Q Consensus 233 ~~~d~~i~iwd~~~~-----~--~~---~~~~~~~~~~v~~~~~~~~-~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~ 301 (341)
++.|+.|++||+.+. + .+ +..+.+|...|.+++|+|+ +.+|++++.||.|++||+++++.+....+| .
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~-~ 192 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPS-T 192 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECG-G
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCC-C
Confidence 888999999998753 1 11 3444568899999999998 789999999999999999999877777776 8
Q ss_pred CceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceee
Q 019405 302 GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLS 337 (341)
Q Consensus 302 ~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 337 (341)
..|++++|+|+|++|++++.||.|++||++ ++...
T Consensus 193 ~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~ 227 (434)
T 2oit_A 193 VAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKK 227 (434)
T ss_dssp GCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEE
T ss_pred CceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccccc
Confidence 899999999999999999999999999998 54443
No 153
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.86 E-value=9.9e-19 Score=148.42 Aligned_cols=283 Identities=12% Similarity=0.020 Sum_probs=175.2
Q ss_pred eeeeecCC--CCeEEEEEecCccCccceeeecc-CCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCC-CCcchhee
Q 019405 16 RALTFDSL--GLIKVIEARGEHGGVPKVVERWG-DPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPL-NGDLRVAI 91 (341)
Q Consensus 16 ~~~~~~~~--g~i~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~ 91 (341)
.++.|+.. +.|.++++... +|..+.+.... ........+++++++. +|++++.+ .|.+|++. +++.....
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~-~g~l~~~~~~~~~~~~~~~~~a~spdg~----~l~~~~~~-~v~~~~~~~~g~~~~~~ 77 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDE-KLTCKLIKRTEIPQDEPISWMTFDHERK----NIYGAAMK-KWSSFAVKSPTEIVHEA 77 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETT-TTEEEEEEEEECCTTCCCSEEEECTTSS----EEEEEEBT-EEEEEEEEETTEEEEEE
T ss_pred EEEEEEccCCCcEEEEEEECC-CCCEEEeeEEccCCCCCCcEEEECCCCC----EEEEEccc-eEEEEEECCCCCEEEee
Confidence 34555432 45777777543 35333332221 2234566788887766 78888877 99999997 66654332
Q ss_pred eccCCCCCCCCCCceeeEeeeeccccccccccce-e-EEEc-------------ccceeEEEEeeecccccccCCceEEE
Q 019405 92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT-L-LTCT-------------TKGKASMRSIEVTKVSAESSCSTVKS 156 (341)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l-~~~~-------------~~g~~~i~~~~~~~~~~~~~~~~v~~ 156 (341)
... ..+....+.+ .+++. . + +++. .+|.+.+|+++.... ....+..
T Consensus 78 ~~~-------~~g~~~~~~~-spdg~-------~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~----~~~~~~~ 138 (365)
T 1jof_A 78 SHP-------IGGHPRANDA-DTNTR-------AIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGK----LEKNVQN 138 (365)
T ss_dssp EEE-------CCSSGGGGCT-TSCCE-------EEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCC----EEEEEEE
T ss_pred Eee-------cCCCCccEEE-CCCCC-------EEEEEEecCCcceeccceeecCCceEEEEccCCCCc----CcceEee
Confidence 210 0011222222 22221 2 2 2332 588899999863110 0012223
Q ss_pred EEeecCCceEEEEecCCCCEEEEeeC-CCeEEEEECC-CCceee--ecCCCCCCccCccCCeeeeEEEEEecCCCCEEEE
Q 019405 157 WNVCASGTIAFSKVDISEKFSLFGGK-GVEVNVWDLD-KCEKIW--TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA 232 (341)
Q Consensus 157 ~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~v~i~d~~-~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 232 (341)
+...+...+.+++|+|+|++++++.. ++.|++||+. +++... .+.... +...+..++| +|+++++++
T Consensus 139 ~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-------~g~~p~~~~~--spdg~~l~v 209 (365)
T 1jof_A 139 YEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD-------PGDHPRWVAM--HPTGNYLYA 209 (365)
T ss_dssp EECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS-------TTCCEEEEEE--CTTSSEEEE
T ss_pred EEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC-------CCCCCCEeEE--CCCCCEEEE
Confidence 32234567899999999998887654 6799999998 665432 222110 1134788999 899999887
Q ss_pred EeC-CCeEEEEEcC--CCCce--eEEEEe-------cCC------CeEEEE-EcCCCceEEEEeCCC------CEEEEEC
Q 019405 233 GTN-DHQVRLYDTS--AQRRP--VMSFDF-------RET------PIKAVA-EEPDSFNIYIGNGSG------DLASVDI 287 (341)
Q Consensus 233 ~~~-d~~i~iwd~~--~~~~~--~~~~~~-------~~~------~v~~~~-~~~~~~~l~~g~~dg------~i~iwd~ 287 (341)
++. ++.|.+|++. +++.. ...+.. |.. .+..++ |+|+|++|++++.+. .|.+|++
T Consensus 210 ~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~ 289 (365)
T 1jof_A 210 LMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKL 289 (365)
T ss_dssp EETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEE
T ss_pred EECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEE
Confidence 764 7899999876 33321 112221 121 478899 999999988776432 7999999
Q ss_pred C-CCeEEeE---EeccccCceeEEEecC---CCCEEEEEeCC-CcEEEEEcCCC
Q 019405 288 R-TGKLLGC---FIGKCSGSIRSIARHP---TLPIIASCGLD-SYLRFWDIKTR 333 (341)
Q Consensus 288 ~-~~~~~~~---~~~~~~~~i~~~~~~~---~~~~l~s~~~d-g~v~iwd~~~~ 333 (341)
. ++++... ...+ ...+..++|+| +|++|++++.+ +.|.+|+++..
T Consensus 290 ~~~g~~~~~~~~~~~~-~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 290 RDCGSIEKQLFLSPTP-TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp CTTSCEEEEEEEEECS-SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCEEEeeeeeecC-CCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 6 6665432 3333 45677899999 89999988865 89999998765
No 154
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.86 E-value=3e-19 Score=171.28 Aligned_cols=242 Identities=12% Similarity=0.099 Sum_probs=180.5
Q ss_pred eccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCC-CcchheeeccCCCCCCCCCCceeeEeeeeccccccccc
Q 019405 44 RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN-GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSR 122 (341)
Q Consensus 44 ~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (341)
.+.+|...+..++|+.+ . +++++..|+.++||.+.. +.....+..+ ..+....+ ++++.
T Consensus 198 ~l~~~~~~v~~~~~s~d-~----l~~~~~~dg~~~l~~~~~~g~~~~~l~~~---------~~~~~~~~-SpDG~----- 257 (1045)
T 1k32_A 198 KIVDMSTHVSSPVIVGH-R----IYFITDIDGFGQIYSTDLDGKDLRKHTSF---------TDYYPRHL-NTDGR----- 257 (1045)
T ss_dssp EEECCSSCCEEEEEETT-E----EEEEECTTSSCEEEEEETTSCSCEECCCC---------CSSCEEEE-EESSS-----
T ss_pred ECcCCCCcccceEEeCC-E----EEEEEeccCceEEEEEeCCCCcceEecCC---------CCcceeeE-cCCCC-----
Confidence 44678899999999865 3 577788899999997653 3333333332 22333444 34331
Q ss_pred cceeEEEcccceeEEEEeeecccccccCCceEEEEE----------eecCCceEEEEec-CCCCEEEEeeCCCeEEEEEC
Q 019405 123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN----------VCASGTIAFSKVD-ISEKFSLFGGKGVEVNVWDL 191 (341)
Q Consensus 123 ~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~----------~~~~~~i~~~~~~-~~~~~l~~~~~d~~v~i~d~ 191 (341)
.++.+ .++.+.+|++... .+..+. ..+...+..++|+ |+++.+++++ ++.|.+|++
T Consensus 258 --~la~~-~~~~i~~~d~~~~---------~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~ 324 (1045)
T 1k32_A 258 --RILFS-KGGSIYIFNPDTE---------KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDV 324 (1045)
T ss_dssp --CEEEE-ETTEEEEECTTTC---------CEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECT
T ss_pred --EEEEE-eCCEEEEecCCce---------EeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcC
Confidence 55555 5899999987211 111111 1123468899999 9999999887 779999999
Q ss_pred CCCceeeecCCCCCCccCccCCe-eeeEEEEEecCCCCEEEEEeCCCeEE-EEEcCCCCceeEEEEecCCCeEEEEEcCC
Q 019405 192 DKCEKIWTAKPPPKNSLGIFTPT-WFTSAAFLSIDDHRKFVAGTNDHQVR-LYDTSAQRRPVMSFDFRETPIKAVAEEPD 269 (341)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~l~~~~~d~~i~-iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 269 (341)
.+++... +..+. . .+..++| + +++.|+.++.+..+. +||+..++ ...+..|...+..++|+|+
T Consensus 325 ~~~~~~~-~~~~~---------~~~~~~~~~--s-dg~~l~~~s~~~~l~~~~d~~~~~--~~~l~~~~~~~~~~~~SpD 389 (1045)
T 1k32_A 325 SGTYVLK-VPEPL---------RIRYVRRGG--D-TKVAFIHGTREGDFLGIYDYRTGK--AEKFEENLGNVFAMGVDRN 389 (1045)
T ss_dssp TSSBEEE-CSCCS---------CEEEEEECS--S-SEEEEEEEETTEEEEEEEETTTCC--EEECCCCCCSEEEEEECTT
T ss_pred CCCceEE-ccCCC---------cceEEeeeE--c-CCCeEEEEECCCceEEEEECCCCC--ceEecCCccceeeeEECCC
Confidence 8776543 33322 3 5888999 8 999999988888888 99988754 3444467788999999999
Q ss_pred CceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCC----------cEEEEEcCCCc
Q 019405 270 SFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDS----------YLRFWDIKTRQ 334 (341)
Q Consensus 270 ~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg----------~v~iwd~~~~~ 334 (341)
|++|++++.++.|++||+.+++....+..| ...+..++|+|||++|++++.++ .|++||+.+++
T Consensus 390 G~~la~~~~~~~v~~~d~~tg~~~~~~~~~-~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 390 GKFAVVANDRFEIMTVDLETGKPTVIERSR-EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEEEEECS-SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred CCEEEEECCCCeEEEEECCCCceEEeccCC-CCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence 999999999999999999999988777777 88899999999999998887654 89999999876
No 155
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.85 E-value=2.2e-20 Score=172.73 Aligned_cols=252 Identities=8% Similarity=-0.060 Sum_probs=167.5
Q ss_pred ceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcc
Q 019405 52 NCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT 131 (341)
Q Consensus 52 ~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (341)
...++|++++. ++++ +.||+|++||+.+++....+..+.. ....+.++.+.+... .++.++.
T Consensus 19 ~~~~~~spdg~----~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~-----~~~~v~~~~~SpDg~--------~l~~~~~ 80 (723)
T 1xfd_A 19 DPEAKWISDTE----FIYR-EQKGTVRLWNVETNTSTVLIEGKKI-----ESLRAIRYEISPDRE--------YALFSYN 80 (723)
T ss_dssp CCCCCBSSSSC----BCCC-CSSSCEEEBCGGGCCCEEEECTTTT-----TTTTCSEEEECTTSS--------EEEEEES
T ss_pred ccccEEcCCCc----EEEE-eCCCCEEEEECCCCcEEEEeccccc-----cccccceEEECCCCC--------EEEEEec
Confidence 44556666555 6665 7899999999999887666654311 001356666655544 6777765
Q ss_pred c---------ceeEEEEeeecccccccCCceEEEEEe--ecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeec
Q 019405 132 K---------GKASMRSIEVTKVSAESSCSTVKSWNV--CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTA 200 (341)
Q Consensus 132 ~---------g~~~i~~~~~~~~~~~~~~~~v~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~ 200 (341)
+ +.+.+|++.... .+.... .+...+..++|+|||+.|+.++. +.|++||+.+++.....
T Consensus 81 ~~~~~~~~~~~~i~~~d~~~~~---------~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~ 150 (723)
T 1xfd_A 81 VEPIYQHSYTGYYVLSKIPHGD---------PQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVV 150 (723)
T ss_dssp CCCCSSSCCCSEEEEEESSSCC---------CEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEE
T ss_pred CccceeecceeeEEEEECCCCc---------eEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEe
Confidence 4 677788875432 111111 11223778999999999999886 69999999987765544
Q ss_pred CCCCCCccCccCC---------eeeeEEEEEecCCCCEEEEEeCCC----------------------------------
Q 019405 201 KPPPKNSLGIFTP---------TWFTSAAFLSIDDHRKFVAGTNDH---------------------------------- 237 (341)
Q Consensus 201 ~~~~~~~~~~~~~---------~~v~~~~~~~~~~~~~l~~~~~d~---------------------------------- 237 (341)
..+........++ ..+.+++| +|++++|++++.|+
T Consensus 151 ~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~--SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 228 (723)
T 1xfd_A 151 STGKEGVIYNGLSDWLYEEEILKTHIAHWW--SPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSI 228 (723)
T ss_dssp CCCBTTTEEEEECCHHHHHTTSSSSEEEEE--CTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEE
T ss_pred cCCCCCceECcccceeEEEEeccCcceEEE--CCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCee
Confidence 4322110000000 12378899 99999999987553
Q ss_pred eEEEEEcCCCCceeEEEEec------CCCeEEEEEcCCCceEEEEeC----CCCEEEEECCCCeEEeEEeccccCcee--
Q 019405 238 QVRLYDTSAQRRPVMSFDFR------ETPIKAVAEEPDSFNIYIGNG----SGDLASVDIRTGKLLGCFIGKCSGSIR-- 305 (341)
Q Consensus 238 ~i~iwd~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~g~~----dg~i~iwd~~~~~~~~~~~~~~~~~i~-- 305 (341)
.|++||+.+++. ...+..+ ...+..++|+|||++|++... +..|++||+.+++....+..++...+.
T Consensus 229 ~l~~~d~~~~~~-~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~ 307 (723)
T 1xfd_A 229 SLHVIGLNGPTH-DLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQ 307 (723)
T ss_dssp EEEEEESSSSCC-CEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCC
T ss_pred EEEEEECCCCce-eEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEecc
Confidence 799999988653 3445443 457889999999998877653 356999999999877666544344443
Q ss_pred --EEEecCCCCEEEE--EeCCC------cEEEEE-cCCCc
Q 019405 306 --SIARHPTLPIIAS--CGLDS------YLRFWD-IKTRQ 334 (341)
Q Consensus 306 --~~~~~~~~~~l~s--~~~dg------~v~iwd-~~~~~ 334 (341)
.++|+|||+.|+. +..|+ .|.+|| ..+++
T Consensus 308 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~ 347 (723)
T 1xfd_A 308 NEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSS 347 (723)
T ss_dssp CCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSS
T ss_pred CCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCC
Confidence 8899999997765 45666 577777 34443
No 156
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.85 E-value=2.7e-19 Score=161.40 Aligned_cols=255 Identities=11% Similarity=0.022 Sum_probs=170.1
Q ss_pred eeeecC-CCCeEEEEEecCccCccceeeeccCCC-CCceeEEEeccCCCCCceEEEEcc---CCeEEEeeCCC---Ccch
Q 019405 17 ALTFDS-LGLIKVIEARGEHGGVPKVVERWGDPH-SSNCVLAASIDDSQNDPLLAVARK---NGLTDILNPLN---GDLR 88 (341)
Q Consensus 17 ~~~~~~-~g~i~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~l~~~~~---dg~i~iw~~~~---~~~~ 88 (341)
++.++. +|.+++|.+.. | +. .++..+. ..+..++|++| +++++++. +...+||.+.. +...
T Consensus 36 la~~s~~~g~~~lw~~~~---g--~~-~~lt~~~~~~~~~~~~spd-----~~l~~~~~~~g~~~~~l~~~~~~~~g~~~ 104 (582)
T 3o4h_A 36 LLVVGFSEGSVNAYLYDG---G--ET-VKLNREPINSVLDPHYGVG-----RVILVRDVSKGAEQHALFKVNTSRPGEEQ 104 (582)
T ss_dssp EEEEEEETTEEEEEEEET---T--EE-EECCSSCCSEECEECTTCS-----EEEEEEECSTTSCCEEEEEEETTSTTCCE
T ss_pred EEEEEccCCceeEEEEcC---C--Cc-EeeecccccccccccCCCC-----eEEEEeccCCCCcceEEEEEeccCCCccc
Confidence 343343 78889999743 3 22 2344444 56776777655 36776664 45566665432 2221
Q ss_pred heeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEE
Q 019405 89 VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS 168 (341)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~ 168 (341)
.+... .......+.+..+. .+++...++...+|+++... ..++... .. ..+
T Consensus 105 -~l~~~---------~~~~~~~~s~dg~~-------~~~~s~~~~~~~l~d~~~g~--------~~~l~~~--~~--~~~ 155 (582)
T 3o4h_A 105 -RLEAV---------KPMRILSGVDTGEA-------VVFTGATEDRVALYALDGGG--------LRELARL--PG--FGF 155 (582)
T ss_dssp -ECTTS---------CSBEEEEEEECSSC-------EEEEEECSSCEEEEEEETTE--------EEEEEEE--SS--CEE
T ss_pred -cccCC---------CCceeeeeCCCCCe-------EEEEecCCCCceEEEccCCc--------EEEeecC--CC--ceE
Confidence 22211 12223344333321 44555555556699886433 2223222 22 788
Q ss_pred EecCCCCEEEEeeCC----CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCC--eEEEE
Q 019405 169 KVDISEKFSLFGGKG----VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH--QVRLY 242 (341)
Q Consensus 169 ~~~~~~~~l~~~~~d----~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~--~i~iw 242 (341)
+|+|||++|++++.+ +.|++||+.+++.. .+..+ ...+..++| +|||++|+++..++ .|++|
T Consensus 156 ~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~---------~~~~~~~~~--SpDG~~l~~~~~~~~~~i~~~ 223 (582)
T 3o4h_A 156 VSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSG---------EGSFSSASI--SPGMKVTAGLETAREARLVTV 223 (582)
T ss_dssp EEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCS---------SCEEEEEEE--CTTSCEEEEEECSSCEEEEEE
T ss_pred EECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecC---------CCccccceE--CCCCCEEEEccCCCeeEEEEE
Confidence 999999999988777 78999999887654 34333 255889999 99999999888888 89999
Q ss_pred EcCCCCceeEEEEecCCCeEEEE--------EcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCC
Q 019405 243 DTSAQRRPVMSFDFRETPIKAVA--------EEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP 314 (341)
Q Consensus 243 d~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 314 (341)
|+.+++. . .+..|...+..++ |+|+|.++++++.++.+++|++ ++.+. .. .+.+.+++|+ +++
T Consensus 224 d~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~-~~~v~~~~~s-dg~ 294 (582)
T 3o4h_A 224 DPRDGSV-E-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---AP-QGNHGRVVLW-RGK 294 (582)
T ss_dssp CTTTCCE-E-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CC-SSEEEEEEEE-TTE
T ss_pred cCCCCcE-E-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cC-CCceEEEEec-CCE
Confidence 9998664 4 5666766676677 9999988899999999999999 76655 22 4678999999 999
Q ss_pred EEEEEeCCC---cEEEEEcCC
Q 019405 315 IIASCGLDS---YLRFWDIKT 332 (341)
Q Consensus 315 ~l~s~~~dg---~v~iwd~~~ 332 (341)
++++++.+. .+.+||..+
T Consensus 295 ~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 295 LVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EEEEEEETTEEEEEEEETTCC
T ss_pred EEEEEcCCCCCCeEEEEcCCC
Confidence 888888775 466666653
No 157
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.83 E-value=3e-17 Score=138.27 Aligned_cols=252 Identities=12% Similarity=0.101 Sum_probs=156.1
Q ss_pred eeeecC---CCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEc-cCCeEEEeeCCCCcchheee
Q 019405 17 ALTFDS---LGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR-KNGLTDILNPLNGDLRVAIS 92 (341)
Q Consensus 17 ~~~~~~---~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~ 92 (341)
+++.+. ++.|.+|++... ..+.+..+..+...+..++|++++. +|++++ .++.|++|++........+.
T Consensus 53 l~~~~~~~~~~~v~~~~~~~g---~~~~~~~~~~~~~~p~~~a~spdg~----~l~~~~~~~~~v~v~~~~~~g~~~~~~ 125 (347)
T 3hfq_A 53 LYSVDKEDDEGGIAAWQIDGQ---TAHKLNTVVAPGTPPAYVAVDEARQ----LVYSANYHKGTAEVMKIAADGALTLTD 125 (347)
T ss_dssp EEEEEEETTEEEEEEEEEETT---EEEEEEEEEEESCCCSEEEEETTTT----EEEEEETTTTEEEEEEECTTSCEEEEE
T ss_pred EEEEEecCCCceEEEEEecCC---cEEEeeeeecCCCCCEEEEECCCCC----EEEEEeCCCCEEEEEEeCCCCCeeecc
Confidence 444443 578888888543 2234444444666778889988776 777776 78999999996322222222
Q ss_pred ccCCCCCC----CCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEE
Q 019405 93 NAGDSGAQ----PEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS 168 (341)
Q Consensus 93 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~ 168 (341)
........ .....+.++.+.+... .+++...++.+.+|++..... -..+.............+
T Consensus 126 ~~~~~~~~p~~~~~~~~~~~~~~spdg~--------l~v~~~~~~~v~~~~~~~~g~-----~~~~~~~~~~~g~~p~~~ 192 (347)
T 3hfq_A 126 TVQHSGHGPRPEQDGSHIHYTDLTPDNR--------LAVIDLGSDKVYVYNVSDAGQ-----LSEQSVLTMEAGFGPRHL 192 (347)
T ss_dssp EEECCCCCSSTTCSSCCEEEEEECTTSC--------EEEEETTTTEEEEEEECTTSC-----EEEEEEEECCTTCCEEEE
T ss_pred eeecCCCCCCccccCCCceEEEECCCCc--------EEEEeCCCCEEEEEEECCCCc-----EEEeeeEEcCCCCCCceE
Confidence 11100000 0122344555544333 667777788999999862110 011222233334467889
Q ss_pred EecCCCCEEEE-eeCCCeEEEEECCC--Cce--eeecCCCCCCccCccCCeeeeEEEEEecCCCCEEE-EEeCCCeEEEE
Q 019405 169 KVDISEKFSLF-GGKGVEVNVWDLDK--CEK--IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV-AGTNDHQVRLY 242 (341)
Q Consensus 169 ~~~~~~~~l~~-~~~d~~v~i~d~~~--~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-~~~~d~~i~iw 242 (341)
+|+|+++++++ ...++.|.+|++.. ++. ...+...... ......+..++| +|++++|+ +...++.|.+|
T Consensus 193 ~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~i~~--spdG~~l~v~~~~~~~v~v~ 267 (347)
T 3hfq_A 193 VFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPAD---YTAHNGAAAIRL--SHDGHFLYVSNRGYNTLAVF 267 (347)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTT---CCSCCEEEEEEE--CTTSCEEEEEEETTTEEEEE
T ss_pred EECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCC---CCCCCcceeEEE--CCCCCEEEEEeCCCCEEEEE
Confidence 99999996665 56688999999874 432 1222211110 011245788999 99999774 55568999999
Q ss_pred EcCCCC--ceeEEEEecCCCeEEEEEcCCCceEEEEeCC-CCEEEE--ECCCCeEE
Q 019405 243 DTSAQR--RPVMSFDFRETPIKAVAEEPDSFNIYIGNGS-GDLASV--DIRTGKLL 293 (341)
Q Consensus 243 d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d-g~i~iw--d~~~~~~~ 293 (341)
++.... ..+..+..+...+..++|+|+|++|++++.+ +.|.+| |..++++.
T Consensus 268 ~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 268 AVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred EECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 987321 2344555556678899999999988888764 889999 55667654
No 158
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.81 E-value=5e-17 Score=136.80 Aligned_cols=250 Identities=9% Similarity=0.055 Sum_probs=165.9
Q ss_pred ceeeeecCCCCeEEEEEecCccCccceeeeccCCC-CCceeEEEeccCCCCCceE-EEEccCCeEEEeeCCCCcchheee
Q 019405 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPH-SSNCVLAASIDDSQNDPLL-AVARKNGLTDILNPLNGDLRVAIS 92 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~ 92 (341)
..+++++.++.|.+|++... ++...+..+. .....+++++++. ++ +++..++.|.+||+.+++.+..+.
T Consensus 12 ~~~v~~~~~~~v~~~d~~~~-----~~~~~~~~~~~~~~~~~~~s~dg~----~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 12 EYMIVTNYPNNLHVVDVASD-----TVYKSCVMPDKFGPGTAMMAPDNR----TAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp EEEEEEETTTEEEEEETTTT-----EEEEEEECSSCCSSCEEEECTTSS----EEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred EEEEEeCCCCeEEEEECCCC-----cEEEEEecCCCCCCceeEECCCCC----EEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 44677888999999998765 4554553332 2456777876664 44 556678999999999888776665
Q ss_pred ccCCCCCCCCCCceeeEeeeeccccccccccceeEEEccc------------ceeEEEEeeecccccccCCceEEEEEee
Q 019405 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK------------GKASMRSIEVTKVSAESSCSTVKSWNVC 160 (341)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------g~~~i~~~~~~~~~~~~~~~~v~~~~~~ 160 (341)
...... .....+..+.+.+... .++++..+ +.+.+|++...... ..+..+.
T Consensus 83 ~~~~~~--~~~~~~~~~~~spdg~--------~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-----~~~~~~~-- 145 (349)
T 1jmx_B 83 LSSVPG--EVGRSMYSFAISPDGK--------EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA-----KPVRTFP-- 145 (349)
T ss_dssp SCCSTT--EEEECSSCEEECTTSS--------EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB-----CCSEEEE--
T ss_pred cccccc--cccccccceEECCCCC--------EEEEEcccccccccccccCCCeEEEEECCCcccc-----ceeeecc--
Confidence 311000 0011234455544443 66666654 89999998653311 1233333
Q ss_pred cCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCcc--------------------------Ccc---
Q 019405 161 ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSL--------------------------GIF--- 211 (341)
Q Consensus 161 ~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~--------------------------~~~--- 211 (341)
....+.+++|+|+++ +++++. .|.+||+.+++....+........ ...
T Consensus 146 ~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 222 (349)
T 1jmx_B 146 MPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDD 222 (349)
T ss_dssp CCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC---
T ss_pred CCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCC
Confidence 234678899999999 555543 499999999887766543320000 000
Q ss_pred ------------------------------CCeeeeEEEEEecC-CCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCC
Q 019405 212 ------------------------------TPTWFTSAAFLSID-DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETP 260 (341)
Q Consensus 212 ------------------------------~~~~v~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 260 (341)
....+..++| +| ++++++++ ++.|.+||+.+++. +..+.. ...
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--sp~dg~~l~~~--~~~v~~~d~~~~~~-~~~~~~-~~~ 296 (349)
T 1jmx_B 223 KQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLR--SPKDPNQIYGV--LNRLAKYDLKQRKL-IKAANL-DHT 296 (349)
T ss_dssp ----CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEE--CSSCTTEEEEE--ESEEEEEETTTTEE-EEEEEC-SSC
T ss_pred cCCccccccceeEEEEeccCCcEEecccccCCCcceeeEe--cCCCCCEEEEE--cCeEEEEECccCeE-EEEEcC-CCC
Confidence 0012445666 78 99998888 88999999998653 555553 345
Q ss_pred eEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEecc
Q 019405 261 IKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK 299 (341)
Q Consensus 261 v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 299 (341)
+.+++|+|++++|++++.++.|++||+.+++.+..++.+
T Consensus 297 ~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 297 YYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp CCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred ccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 779999999999988888999999999999998887654
No 159
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.81 E-value=5.9e-16 Score=131.11 Aligned_cols=271 Identities=10% Similarity=0.030 Sum_probs=161.6
Q ss_pred eeeecCC----CCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEc-cCCeEEEeeCCCCcchhee
Q 019405 17 ALTFDSL----GLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR-KNGLTDILNPLNGDLRVAI 91 (341)
Q Consensus 17 ~~~~~~~----g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~ 91 (341)
+++++.+ |.+.+|++... +|..+.+.....+......+++ ++ ++|+++. .++.|.+|++.....+..+
T Consensus 64 l~~~~~~~~~~~~v~~~~~~~~-~g~~~~~~~~~~~~~~p~~~~~--dg----~~l~~~~~~~~~v~~~~~~~~g~~~~~ 136 (361)
T 3scy_A 64 VYSVNEFSKDQAAVSAFAFDKE-KGTLHLLNTQKTMGADPCYLTT--NG----KNIVTANYSGGSITVFPIGQDGALLPA 136 (361)
T ss_dssp EEEEECCSSTTCEEEEEEEETT-TTEEEEEEEEECSSSCEEEEEE--CS----SEEEEEETTTTEEEEEEBCTTSCBCSC
T ss_pred EEEEEccCCCCCcEEEEEEeCC-CCcEEEeeEeccCCCCcEEEEE--CC----CEEEEEECCCCEEEEEEeCCCCcCccc
Confidence 5555554 78888988764 3433444444334444555555 33 3566655 6899999999754433322
Q ss_pred ec---cCC---CCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccC-Cc---eEEEEEeec
Q 019405 92 SN---AGD---SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESS-CS---TVKSWNVCA 161 (341)
Q Consensus 92 ~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~-~~---~v~~~~~~~ 161 (341)
.. +.. .........+.++.+.+.... .+++...++.+.+|+++......... -. .........
T Consensus 137 ~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~-------l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 209 (361)
T 3scy_A 137 SDVIEFKGSGPDKERQTMPHLHCVRITPDGKY-------LLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAP 209 (361)
T ss_dssp SEEEECCCCCSCTTTCSSCCEEEEEECTTSSE-------EEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCT
T ss_pred ceeEEccCCCCCccccCCCcceEEEECCCCCE-------EEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCC
Confidence 11 110 000011223344555444331 34445558899999986432100000 00 112334444
Q ss_pred CCceEEEEecCCCCEEEEee-CCCeEEEEECCCCce--eeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCC--
Q 019405 162 SGTIAFSKVDISEKFSLFGG-KGVEVNVWDLDKCEK--IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-- 236 (341)
Q Consensus 162 ~~~i~~~~~~~~~~~l~~~~-~d~~v~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-- 236 (341)
......++|+|++++++++. .++.|.+||+.+++. +..+..... +......++| +|++++|+++..+
T Consensus 210 ~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~------~~~~~~~i~~--spdg~~l~v~~~~~~ 281 (361)
T 3scy_A 210 GSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTV------NAQGSGDIHL--SPDGKYLYASNRLKA 281 (361)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSS------CCCCEEEEEE--CTTSSEEEEEECSSS
T ss_pred CCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCC------CCCCcccEEE--CCCCCEEEEECCCCC
Confidence 56678999999999887776 689999999987644 222222111 1133578899 9999988776654
Q ss_pred CeEEEEEcC--CCCc-eeEEEEecCCCeEEEEEcCCCceEEEEe-CCCCEEEE--ECCCCeEEeEEeccccCceeEEEec
Q 019405 237 HQVRLYDTS--AQRR-PVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASV--DIRTGKLLGCFIGKCSGSIRSIARH 310 (341)
Q Consensus 237 ~~i~iwd~~--~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~dg~i~iw--d~~~~~~~~~~~~~~~~~i~~~~~~ 310 (341)
+.|.+|++. +++. .+..+.. ...+..++|+|+|++|++++ .++.|.+| |..++++.......+...+.++.|.
T Consensus 282 ~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 282 DGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp CEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred CEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 899999996 3331 2333433 45678999999999888887 56889995 5567776554322224568888885
No 160
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.81 E-value=1.7e-16 Score=129.90 Aligned_cols=248 Identities=10% Similarity=0.109 Sum_probs=167.7
Q ss_pred CCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEE
Q 019405 50 SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC 129 (341)
Q Consensus 50 ~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (341)
.....+++++++. ++++...++.|.+||.. ++.+..+..... ...+...+..+++.+..+ .++.+
T Consensus 30 ~~p~~v~~~~~g~----l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~--~~~~~~~p~~i~~~~~~g--------~l~v~ 94 (286)
T 1q7f_A 30 TEPSGVAVNAQND----IIVADTNNHRIQIFDKE-GRFKFQFGECGK--RDSQLLYPNRVAVVRNSG--------DIIVT 94 (286)
T ss_dssp SCEEEEEECTTCC----EEEEEGGGTEEEEECTT-SCEEEEECCBSS--STTCBSSEEEEEEETTTT--------EEEEE
T ss_pred CCCceEEECCCCC----EEEEECCCCEEEEECCC-CcEEEEecccCC--CcccccCceEEEEEcCCC--------eEEEE
Confidence 4456677765544 77777889999999986 555544432110 001223455565533333 44444
Q ss_pred c-c-cceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCc
Q 019405 130 T-T-KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNS 207 (341)
Q Consensus 130 ~-~-~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~ 207 (341)
. . ++.+.+|+.. ...+..+.......+..++++++++++++...++.|.+||.. ++....+....
T Consensus 95 ~~~~~~~i~~~d~~---------g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~--- 161 (286)
T 1q7f_A 95 ERSPTHQIQIYNQY---------GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSK--- 161 (286)
T ss_dssp ECGGGCEEEEECTT---------SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTT---
T ss_pred cCCCCCEEEEECCC---------CcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCC---
Confidence 4 3 7888888732 113334433333568899999999988887788999999964 55555443211
Q ss_pred cCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEec--CCCeEEEEEcCCCceEEEEeCCC-CEEE
Q 019405 208 LGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR--ETPIKAVAEEPDSFNIYIGNGSG-DLAS 284 (341)
Q Consensus 208 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~g~~dg-~i~i 284 (341)
+...+..+++ +++++++++...++.|++||... +. +..+..+ ...+..++++|+|+++++...++ .|.+
T Consensus 162 ----~~~~p~~i~~--~~~g~l~v~~~~~~~i~~~~~~g-~~-~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~ 233 (286)
T 1q7f_A 162 ----HLEFPNGVVV--NDKQEIFISDNRAHCVKVFNYEG-QY-LRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTI 233 (286)
T ss_dssp ----TCSSEEEEEE--CSSSEEEEEEGGGTEEEEEETTC-CE-EEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEE
T ss_pred ----ccCCcEEEEE--CCCCCEEEEECCCCEEEEEcCCC-CE-EEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEE
Confidence 1134788999 88898888878899999999754 32 5555433 25688999999998888887776 9999
Q ss_pred EECCCCeEEeEEeccc-cCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCce
Q 019405 285 VDIRTGKLLGCFIGKC-SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL 335 (341)
Q Consensus 285 wd~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 335 (341)
||. +++.+..+..+. ...+.+++++|+|+++++ +.|+.|++|++....+
T Consensus 234 ~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~p 283 (286)
T 1q7f_A 234 FTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLAP 283 (286)
T ss_dssp ECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCCC
T ss_pred ECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccccc
Confidence 995 567777776541 224779999999987777 6799999999876544
No 161
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.81 E-value=1e-18 Score=161.48 Aligned_cols=280 Identities=10% Similarity=-0.016 Sum_probs=172.7
Q ss_pred eeeeecCCCCeEEEEEecCccCccceeeeccCCCC---CceeEEEeccCCCCCceEEEEcc---------CCeEEEeeCC
Q 019405 16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHS---SNCVLAASIDDSQNDPLLAVARK---------NGLTDILNPL 83 (341)
Q Consensus 16 ~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~s~~~~~~~~~l~~~~~---------dg~i~iw~~~ 83 (341)
+++..+.||.|++|++... +....+..+.. .+..++||+|++ +|++++. ++.|++||+.
T Consensus 28 ~~~~~~~d~~i~~~~~~~g-----~~~~~~~~~~~~~~~~~~~~~SpDg~----~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 28 EYLHQSADNNIVLYNIETG-----QSYTILSNRTMKSVNASNYGLSPDRQ----FVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp EEEEECTTSCEEEEESSSC-----CEEEEECHHHHHTTTCSEEEECTTSS----EEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred eEEEEcCCCCEEEEEcCCC-----cEEEEEccccccccceeeEEECCCCC----eEEEEecCceeEEeecceEEEEEECC
Confidence 5666777999999998775 33333433322 377788887766 8888876 7899999999
Q ss_pred CCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCce-EEEEEeecC
Q 019405 84 NGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCST-VKSWNVCAS 162 (341)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~-v~~~~~~~~ 162 (341)
+++.+..... ...+..+.|.+... .++.+ .++.+.+|++.......-..++. ..+++. +.
T Consensus 99 ~g~~~~~~~l---------~~~~~~~~~SPDG~--------~la~~-~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g-~~ 159 (719)
T 1z68_A 99 NGEFVRGNEL---------PRPIQYLCWSPVGS--------KLAYV-YQNNIYLKQRPGDPPFQITFNGRENKIFNG-IP 159 (719)
T ss_dssp TTEECCSSCC---------CSSBCCEEECSSTT--------CEEEE-ETTEEEEESSTTSCCEECCCCCBTTTEEES-SC
T ss_pred CCccccceec---------CcccccceECCCCC--------EEEEE-ECCeEEEEeCCCCCcEEEecCCCcCCeEcc-cc
Confidence 8876311111 02344455544444 56655 47899999986443211000000 001110 00
Q ss_pred ---------CceEEEEecCCCCEEEEeeCCC----------------------------------eEEEEECCCCcee--
Q 019405 163 ---------GTIAFSKVDISEKFSLFGGKGV----------------------------------EVNVWDLDKCEKI-- 197 (341)
Q Consensus 163 ---------~~i~~~~~~~~~~~l~~~~~d~----------------------------------~v~i~d~~~~~~~-- 197 (341)
.....++|+|||++|++++.|. .|++||+.+++..
T Consensus 160 ~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~ 239 (719)
T 1z68_A 160 DWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGP 239 (719)
T ss_dssp CHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCC
T ss_pred cceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccce
Confidence 1124899999999999987652 7889999887642
Q ss_pred eecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCC----CeEEEEE----cCCCCceeEEE----EecCCCeE---
Q 019405 198 WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND----HQVRLYD----TSAQRRPVMSF----DFRETPIK--- 262 (341)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d----~~i~iwd----~~~~~~~~~~~----~~~~~~v~--- 262 (341)
..+..+. . ...+...+..++| +|+++++++.... ..|.+|| ..+++. ...+ ..|...+.
T Consensus 240 ~~~~~~~--~-~~~~~~~~~~~~~--SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~ 313 (719)
T 1z68_A 240 QEVPVPA--M-IASSDYYFSWLTW--VTDERVCLQWLKRVQNVSVLSICDFREDWQTWDC-PKTQEHIEESRTGWAGGFF 313 (719)
T ss_dssp EECCCCH--H-HHTSCEEEEEEEE--SSSSEEEEEEEESSTTEEEEEEEEECSSSSSEEC-CGGGEEEEECSSSCSSSSS
T ss_pred eEccCCc--c-CCCCcceEEEeEE--eCCCeEEEEEeccccCeEEEEEEcccCCCCCCce-EEEEecccccCCceEcccc
Confidence 1121100 0 0113467899999 8898777664432 2488899 666442 2222 35666666
Q ss_pred --EEEEcCCCceEEE--EeCCC--CEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCC-----CcEEEEEcC
Q 019405 263 --AVAEEPDSFNIYI--GNGSG--DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLD-----SYLRFWDIK 331 (341)
Q Consensus 263 --~~~~~~~~~~l~~--g~~dg--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-----g~v~iwd~~ 331 (341)
.+.|+|+|+.|+. ...+| .|++||+.+++ ...+..+ ...+..+.++ +++.|+..+.+ +..++|.+.
T Consensus 314 ~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~-~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~ 390 (719)
T 1z68_A 314 VSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSG-KWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRIS 390 (719)
T ss_dssp CCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCS-SSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred CCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccC-ceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEe
Confidence 7899999986654 44555 47777887766 3345444 5567787777 77776666554 788899875
Q ss_pred C
Q 019405 332 T 332 (341)
Q Consensus 332 ~ 332 (341)
.
T Consensus 391 ~ 391 (719)
T 1z68_A 391 I 391 (719)
T ss_dssp C
T ss_pred C
Confidence 3
No 162
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.80 E-value=2.2e-19 Score=165.96 Aligned_cols=249 Identities=7% Similarity=-0.075 Sum_probs=160.6
Q ss_pred eEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcc--
Q 019405 54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT-- 131 (341)
Q Consensus 54 ~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-- 131 (341)
.++|++++. +++ .+.|++|++||+.+++....+..+... ...+.++.+.+... .++.++.
T Consensus 20 ~~~~s~dg~----~~~-~~~d~~i~~~~~~~g~~~~~~~~~~~~-----~~~~~~~~~SpDg~--------~la~~~~~~ 81 (719)
T 1z68_A 20 FPNWISGQE----YLH-QSADNNIVLYNIETGQSYTILSNRTMK-----SVNASNYGLSPDRQ--------FVYLESDYS 81 (719)
T ss_dssp CCEESSSSE----EEE-ECTTSCEEEEESSSCCEEEEECHHHHH-----TTTCSEEEECTTSS--------EEEEEEEEE
T ss_pred ccEECCCCe----EEE-EcCCCCEEEEEcCCCcEEEEEcccccc-----ccceeeEEECCCCC--------eEEEEecCc
Confidence 445665553 444 456999999999998876655542100 01245555555444 6776665
Q ss_pred -------cceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCC
Q 019405 132 -------KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP 204 (341)
Q Consensus 132 -------~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~ 204 (341)
++.+.+|++....... . . .+ ...+..++|+|||+.|+.+. ++.|++||+.+++.........
T Consensus 82 ~~~~~s~~~~i~~~d~~~g~~~~---~---~--~l--~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~ 150 (719)
T 1z68_A 82 KLWRYSYTATYYIYDLSNGEFVR---G---N--EL--PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGR 150 (719)
T ss_dssp ECSSSCEEEEEEEEETTTTEECC---S---S--CC--CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCB
T ss_pred eeEEeecceEEEEEECCCCcccc---c---e--ec--CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCC
Confidence 6889999875443200 0 0 01 24578899999999999885 6799999998877654322211
Q ss_pred CCccCccCCeee---------eEEEEEecCCCCEEEEEeCCC----------------------------------eEEE
Q 019405 205 KNSLGIFTPTWF---------TSAAFLSIDDHRKFVAGTNDH----------------------------------QVRL 241 (341)
Q Consensus 205 ~~~~~~~~~~~v---------~~~~~~~~~~~~~l~~~~~d~----------------------------------~i~i 241 (341)
....-..++.++ .+++| +|||++|++++.|. .|++
T Consensus 151 ~~~v~~g~~~~v~~ee~~~~~~~~~w--SPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~ 228 (719)
T 1z68_A 151 ENKIFNGIPDWVYEEEMLATKYALWW--SPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFI 228 (719)
T ss_dssp TTTEEESSCCHHHHHHTTCSSCCEEE--CTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEE
T ss_pred cCCeEcccccceeeeecccCcccEEE--CCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEE
Confidence 110000111222 57899 99999999987652 7889
Q ss_pred EEcCCCCce--eE-----EEEecCCCeEEEEEcCCCceEEEEeCC----CCEEEEE----CCCCeEEeEE----eccccC
Q 019405 242 YDTSAQRRP--VM-----SFDFRETPIKAVAEEPDSFNIYIGNGS----GDLASVD----IRTGKLLGCF----IGKCSG 302 (341)
Q Consensus 242 wd~~~~~~~--~~-----~~~~~~~~v~~~~~~~~~~~l~~g~~d----g~i~iwd----~~~~~~~~~~----~~~~~~ 302 (341)
||+.+++.. +. .+..|...+..++|+||++++++.... ..|++|| +.+++....+ ..+ ..
T Consensus 229 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~-~~ 307 (719)
T 1z68_A 229 IDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESR-TG 307 (719)
T ss_dssp EESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECS-SS
T ss_pred EECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccC-Cc
Confidence 999875431 11 122466778999999998877764432 2488999 8888776555 344 66
Q ss_pred cee-----EEEecCCCCEEEE--EeCCC--cEEEEEcCCCc
Q 019405 303 SIR-----SIARHPTLPIIAS--CGLDS--YLRFWDIKTRQ 334 (341)
Q Consensus 303 ~i~-----~~~~~~~~~~l~s--~~~dg--~v~iwd~~~~~ 334 (341)
.+. .+.|+|+|+.|+. ...+| .|.+||+.+++
T Consensus 308 ~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~ 348 (719)
T 1z68_A 308 WAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN 348 (719)
T ss_dssp CSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT
T ss_pred eEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc
Confidence 676 8899999996544 44555 57777877655
No 163
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.78 E-value=1.5e-17 Score=153.96 Aligned_cols=254 Identities=7% Similarity=-0.034 Sum_probs=158.5
Q ss_pred CceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEc
Q 019405 51 SNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT 130 (341)
Q Consensus 51 ~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 130 (341)
....++|++++. +|+++ |++|++||+.+++....+..+...... .......+ +++++ .++.++
T Consensus 18 ~~~~~~w~~dg~----~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-Spdg~-------~l~~~~ 80 (740)
T 4a5s_A 18 KLYSLRWISDHE----YLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFG---HSINDYSI-SPDGQ-------FILLEY 80 (740)
T ss_dssp CCCCEEECSSSE----EEEEE--TTEEEEEETTTCCEEEEECTTTTTTCC---SCCCEEEE-CTTSS-------EEEEEE
T ss_pred cccccEECCCCc----EEEEc--CCcEEEEECCCCceEEEEechhhhhhc---ccccceEE-CCCCC-------EEEEEE
Confidence 344567776654 77776 999999999999876666654321110 11111333 33332 666666
Q ss_pred cc---------ceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecC
Q 019405 131 TK---------GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAK 201 (341)
Q Consensus 131 ~~---------g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~ 201 (341)
.+ +.+.+|++..... ... ..+...+...+|+|||+.||.+. ++.|++||+.+++..+...
T Consensus 81 ~~~~~~r~~~~~~~~~~d~~~~~~---------~~l-~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~ 149 (740)
T 4a5s_A 81 NYVKQWRHSYTASYDIYDLNKRQL---------ITE-ERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITW 149 (740)
T ss_dssp EEEECSSSCEEEEEEEEETTTTEE---------CCS-SCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCS
T ss_pred CCeeeEEEccceEEEEEECCCCcE---------EEc-ccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcC
Confidence 54 5556888754331 111 12345788999999999999874 6799999998876543222
Q ss_pred CCCCCccCccCCee---------eeEEEEEecCCCCEEEEEeCCC-----------------------------------
Q 019405 202 PPPKNSLGIFTPTW---------FTSAAFLSIDDHRKFVAGTNDH----------------------------------- 237 (341)
Q Consensus 202 ~~~~~~~~~~~~~~---------v~~~~~~~~~~~~~l~~~~~d~----------------------------------- 237 (341)
.......-..++.+ ...+.| +|||++|+..+.|.
T Consensus 150 ~g~~~~~~~g~~~~v~~ee~~~~~~~~~w--SpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~ 227 (740)
T 4a5s_A 150 TGKEDIIYNGITDWVYEEEVFSAYSALWW--SPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPT 227 (740)
T ss_dssp CCBTTTEEESBCCHHHHHHTSSSSBCEEE--CTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCE
T ss_pred CCCccceecCcccccccchhcCCCcceEE--CCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCe
Confidence 11111000011111 234789 99999999875332
Q ss_pred -eEEEEEcCC---CCc-eeEEEEe------cCCCeEEEEEcCCCceEEEEeC----CCCEEEEECCCCe----EE--eEE
Q 019405 238 -QVRLYDTSA---QRR-PVMSFDF------RETPIKAVAEEPDSFNIYIGNG----SGDLASVDIRTGK----LL--GCF 296 (341)
Q Consensus 238 -~i~iwd~~~---~~~-~~~~~~~------~~~~v~~~~~~~~~~~l~~g~~----dg~i~iwd~~~~~----~~--~~~ 296 (341)
.|++||+.+ ++. ....+.. |...+..++|+|||+.++.... +..|++||+.+++ +. ..+
T Consensus 228 ~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l 307 (740)
T 4a5s_A 228 VKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQH 307 (740)
T ss_dssp EEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCE
T ss_pred eEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEe
Confidence 578899887 631 1333432 6667899999999986665432 3369999999887 22 222
Q ss_pred --eccccCcee-----EEEecCCCCEEE-EEeC-CC--cEEEEEcCCCce
Q 019405 297 --IGKCSGSIR-----SIARHPTLPIIA-SCGL-DS--YLRFWDIKTRQL 335 (341)
Q Consensus 297 --~~~~~~~i~-----~~~~~~~~~~l~-s~~~-dg--~v~iwd~~~~~~ 335 (341)
..+ ...|. .++|+|||+.|+ ..+. +| .|++||+.+++.
T Consensus 308 ~~~~~-~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~ 356 (740)
T 4a5s_A 308 IEMST-TGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC 356 (740)
T ss_dssp EEECS-SSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC
T ss_pred eeccC-CceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce
Confidence 333 55554 789999999776 6653 44 688889887654
No 164
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.78 E-value=4.2e-16 Score=131.75 Aligned_cols=277 Identities=10% Similarity=0.019 Sum_probs=174.8
Q ss_pred CCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEc----------cCCeEEEeeCCCCcchhee
Q 019405 22 SLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR----------KNGLTDILNPLNGDLRVAI 91 (341)
Q Consensus 22 ~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~ 91 (341)
.|+.+.+|+.... +++.++..+..+ .++|+++++ +|+++. .++.|.+||..+++.+.++
T Consensus 29 ~d~~v~v~D~~t~-----~~~~~i~~g~~p--~i~~spdg~----~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i 97 (361)
T 2oiz_A 29 TESRVHVYDYTNG-----KFLGMVPTAFNG--HVQVSNDGK----KIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEI 97 (361)
T ss_dssp GGCEEEEEETTTC-----CEEEEEECCEEE--EEEECTTSS----EEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEE
T ss_pred ccCeEEEEECCCC-----eEEEEecCCCCC--ceEECCCCC----EEEEEEecccccccCCCCCEEEEEECcCCcEEEEE
Confidence 3678889886554 555566554444 678887766 787775 3678999999988888777
Q ss_pred eccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcc--cceeEEEEeeecccccccCCceEEEEEeecCCceEEEE
Q 019405 92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT--KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSK 169 (341)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~ 169 (341)
...... + ........+.+.+..+ .++++.. ++.+.+|++.... .+... +...+ ...+.
T Consensus 98 ~~~~~~-~-~~g~~p~~i~~spdg~--------~l~v~n~~~~~~v~v~d~~~~~--------~~~~~-i~~~~-~~~v~ 157 (361)
T 2oiz_A 98 SLPPKR-V-QGLNYDGLFRQTTDGK--------FIVLQNASPATSIGIVDVAKGD--------YVEDV-TAAAG-CWSVI 157 (361)
T ss_dssp EECTTB-C-CBCCCGGGEEECTTSS--------EEEEEEESSSEEEEEEETTTTE--------EEEEE-GGGTT-EEEEE
T ss_pred EcCccc-c-ccCCCcceEEECCCCC--------EEEEECCCCCCeEEEEECCCCc--------EEEEE-ecCCC-cceeE
Confidence 642100 0 0112333444444433 6666653 5789999875432 22210 21222 22245
Q ss_pred ecCCC-CEEEEeeCCCeEEEEECCC-CceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCC
Q 019405 170 VDISE-KFSLFGGKGVEVNVWDLDK-CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ 247 (341)
Q Consensus 170 ~~~~~-~~l~~~~~d~~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 247 (341)
+.|++ ..+++.+.||.+.+|++.. ++......... .+.. ...++ .+.+ .+++..++..+.++.|.++|+...
T Consensus 158 ~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~--~~~~-~~~~~-~~~~--~~~g~~~~~~~~~~~v~v~d~~~~ 231 (361)
T 2oiz_A 158 PQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQ--MFSV-KDDPI-FIAP--ALDKDKAHFVSYYGNVYSADFSGD 231 (361)
T ss_dssp ECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCC--CSCT-TTSCB-CSCC--EECSSEEEEEBTTSEEEEEECSSS
T ss_pred EcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccc--eEcC-CCCce-EEEe--cccCCEEEEEeCCCeEEEEEecCC
Confidence 56655 6777888899999999865 44431111000 0000 00111 1222 456667777778999999998764
Q ss_pred Ccee-EEEEec------C----CCeEEEEEcCCCceEEEEeC-----------CCCEEEEECCCCeEEeEEeccccCcee
Q 019405 248 RRPV-MSFDFR------E----TPIKAVAEEPDSFNIYIGNG-----------SGDLASVDIRTGKLLGCFIGKCSGSIR 305 (341)
Q Consensus 248 ~~~~-~~~~~~------~----~~v~~~~~~~~~~~l~~g~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~i~ 305 (341)
...+ ..+... . .....++|+|++..++++.. .+.|.+||+.+++.+.++..+ . +.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~-~--p~ 308 (361)
T 2oiz_A 232 EVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGR-D--AL 308 (361)
T ss_dssp SCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECT-T--CC
T ss_pred CceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecC-C--ee
Confidence 4211 122110 0 11123789999888777643 347999999999999999987 4 99
Q ss_pred EEEecCCCCEEEEEeCCCcEEEEEcCCC--ceeeee
Q 019405 306 SIARHPTLPIIASCGLDSYLRFWDIKTR--QLLSAV 339 (341)
Q Consensus 306 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~--~~~~~~ 339 (341)
+++|+|+|++|++++. +.|.+||..++ +.+.++
T Consensus 309 ~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i 343 (361)
T 2oiz_A 309 SMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTI 343 (361)
T ss_dssp EEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEE
T ss_pred EEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEe
Confidence 9999999999998887 99999999999 888775
No 165
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.78 E-value=1.9e-16 Score=132.28 Aligned_cols=253 Identities=9% Similarity=-0.001 Sum_probs=171.1
Q ss_pred CCCceeEEEeccCCCCCceEEEEccC------------------------CeEEEeeCCCCcchheeeccCCCCCCCCCC
Q 019405 49 HSSNCVLAASIDDSQNDPLLAVARKN------------------------GLTDILNPLNGDLRVAISNAGDSGAQPEDD 104 (341)
Q Consensus 49 ~~~~~~~~~s~~~~~~~~~l~~~~~d------------------------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 104 (341)
-..+..+++++++. ++++...+ ++|.+||..+++.+..+.. ....
T Consensus 23 l~~v~~va~d~~G~----l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~-------~~~~ 91 (329)
T 3fvz_A 23 PGQVSGVALDSKNN----LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGK-------NLFY 91 (329)
T ss_dssp CSCEEEEEECTTCC----EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECT-------TTCS
T ss_pred cCCceEEEECCCCC----EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCC-------CccC
Confidence 35577778776655 66666655 4799999988887654432 1223
Q ss_pred ceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEE--------eecCCceEEEEecC-CCC
Q 019405 105 GIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN--------VCASGTIAFSKVDI-SEK 175 (341)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~--------~~~~~~i~~~~~~~-~~~ 175 (341)
....+++-+... .+++...++.+.+|+.+... ..+..+. ..+-.....++++| ++.
T Consensus 92 ~p~gia~d~~g~--------l~v~d~~~~~v~~~~~~g~~-------~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~ 156 (329)
T 3fvz_A 92 LPHGLSIDTDGN--------YWVTDVALHQVFKLDPHSKE-------GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGA 156 (329)
T ss_dssp SEEEEEECTTSC--------EEEEETTTTEEEEECTTCSS-------CCSEEESBTTBCCCSTTCCSSEEEEEECTTTCC
T ss_pred CceEEEECCCCC--------EEEEECCCCEEEEEeCCCCe-------EEEEEecccCCCCCCccccCCCcEEEEeCCCCe
Confidence 455565543333 77777778999999864221 0122221 01123578999999 788
Q ss_pred EEEEee-CCCeEEEEECCCCceeeecCCCCCCc-cCccCCeeeeEEEEEecCC-CCEEEEEeCCCeEEEEEcCCCCceeE
Q 019405 176 FSLFGG-KGVEVNVWDLDKCEKIWTAKPPPKNS-LGIFTPTWFTSAAFLSIDD-HRKFVAGTNDHQVRLYDTSAQRRPVM 252 (341)
Q Consensus 176 ~l~~~~-~d~~v~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~ 252 (341)
++++.+ .++.|++|| .+++.+..+....... ....+-.....+++ +|+ +.++++...++.|++||..+++. +.
T Consensus 157 lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~--d~~~g~l~v~d~~~~~I~~~~~~~G~~-~~ 232 (329)
T 3fvz_A 157 VFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLAL--VPHLDQLCVADRENGRIQCFKTDTKEF-VR 232 (329)
T ss_dssp EEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEE--ETTTTEEEEEETTTTEEEEEETTTCCE-EE
T ss_pred EEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEE--ECCCCEEEEEECCCCEEEEEECCCCcE-EE
Confidence 888876 689999999 5666666554221100 00001134788999 787 77777888899999999986654 55
Q ss_pred EEE--ecCCCeEEEEEcC------CCceEEEEeCCCCEEEEECCCCeEEeEEe---ccccCceeEEEecCCCCEEEEEeC
Q 019405 253 SFD--FRETPIKAVAEEP------DSFNIYIGNGSGDLASVDIRTGKLLGCFI---GKCSGSIRSIARHPTLPIIASCGL 321 (341)
Q Consensus 253 ~~~--~~~~~v~~~~~~~------~~~~l~~g~~dg~i~iwd~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~s~~~ 321 (341)
.+. .+...+..++++| ++...++...+..|++||..+++.+..+. .+ ......++++|+|.++++...
T Consensus 233 ~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~-~~~p~~ia~~~dG~lyvad~~ 311 (329)
T 3fvz_A 233 EIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKH-FDMPHDIVASEDGTVYIGDAH 311 (329)
T ss_dssp EECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSC-CSSEEEEEECTTSEEEEEESS
T ss_pred EEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCc-cCCeeEEEECCCCCEEEEECC
Confidence 553 2456788999999 33322233345589999999999998874 44 567899999999988888889
Q ss_pred CCcEEEEEcCC
Q 019405 322 DSYLRFWDIKT 332 (341)
Q Consensus 322 dg~v~iwd~~~ 332 (341)
++.|++|++..
T Consensus 312 ~~~I~~~~~~~ 322 (329)
T 3fvz_A 312 TNTVWKFTLTE 322 (329)
T ss_dssp SCCEEEEEEEE
T ss_pred CCEEEEEeCCc
Confidence 99999999864
No 166
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.74 E-value=1.6e-15 Score=129.66 Aligned_cols=246 Identities=8% Similarity=-0.054 Sum_probs=145.6
Q ss_pred ccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEee-eecccccccccc
Q 019405 45 WGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHL-FKRQREESSSRS 123 (341)
Q Consensus 45 ~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 123 (341)
...+...+...+|++++. +|+.+..++.|++||+.+++....+..+ ........+ .+++..
T Consensus 76 t~~~~~~~~~~~~spdg~----~l~~~~~~~~l~~~d~~~g~~~~~~~~~--------~~~~~~~~~~~~~dg~------ 137 (388)
T 3pe7_A 76 TEGRGDNTFGGFLSPDDD----ALFYVKDGRNLMRVDLATLEENVVYQVP--------AEWVGYGTWVANSDCT------ 137 (388)
T ss_dssp CCSSCBCSSSCEECTTSS----EEEEEETTTEEEEEETTTCCEEEEEECC--------TTEEEEEEEEECTTSS------
T ss_pred eeCCCCCccceEEcCCCC----EEEEEeCCCeEEEEECCCCcceeeeech--------hhcccccceeECCCCC------
Confidence 333444444556776665 8999998999999999988765544431 121211222 122221
Q ss_pred ceeEE----------------------EcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecC-CCCEEEEe
Q 019405 124 RTLLT----------------------CTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFG 180 (341)
Q Consensus 124 ~~l~~----------------------~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~-~~~~l~~~ 180 (341)
.++. ...+..+.+|++... .++... .+...+..+.|+| +++.|+..
T Consensus 138 -~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g---------~~~~l~-~~~~~~~~~~~sp~dg~~l~~~ 206 (388)
T 3pe7_A 138 -KLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG---------ESTVIL-QENQWLGHPIYRPYDDSTVAFC 206 (388)
T ss_dssp -EEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC---------CEEEEE-EESSCEEEEEEETTEEEEEEEE
T ss_pred -eeccccccCcccccccccchhhhhhccCCcceEEEEECCCC---------ceEEee-cCCccccccEECCCCCCEEEEE
Confidence 2221 122355666665322 222222 2345688999999 99988877
Q ss_pred eCC------CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeC-CC----eEEEEEcCCCCc
Q 019405 181 GKG------VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DH----QVRLYDTSAQRR 249 (341)
Q Consensus 181 ~~d------~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-d~----~i~iwd~~~~~~ 249 (341)
..+ ..|.++|...++.. .+..... ...+..++| +|+++.|+..+. ++ .|++||+.+++.
T Consensus 207 ~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~-------~~~~~~~~~--spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~ 276 (388)
T 3pe7_A 207 HEGPHDLVDARMWLINEDGTNMR-KVKTHAE-------GESCTHEFW--VPDGSALVYVSYLKGSPDRFIYSADPETLEN 276 (388)
T ss_dssp ECSCTTTSSCSEEEEETTSCCCE-ESCCCCT-------TEEEEEEEE--CTTSSCEEEEEEETTCCCEEEEEECTTTCCE
T ss_pred EecCCCCCcceEEEEeCCCCceE-EeeeCCC-------CcccccceE--CCCCCEEEEEecCCCCCcceEEEEecCCCce
Confidence 653 37888887655433 2322210 134777889 899997765443 22 399999998763
Q ss_pred e-eEEEEecCC---CeEEEEEcCCCceEEEE---------eCCCCEEEEECCCCeEEeEEeccccC-----------cee
Q 019405 250 P-VMSFDFRET---PIKAVAEEPDSFNIYIG---------NGSGDLASVDIRTGKLLGCFIGKCSG-----------SIR 305 (341)
Q Consensus 250 ~-~~~~~~~~~---~v~~~~~~~~~~~l~~g---------~~dg~i~iwd~~~~~~~~~~~~~~~~-----------~i~ 305 (341)
. +..+..+.. ....+.|+|+|+.|+.. ..+..|++||+.+++.. .+..+ .. .+.
T Consensus 277 ~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~~~~~~~~~~~~ 354 (388)
T 3pe7_A 277 RQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH-RVARH-DTSWKVFEGDRQVTHP 354 (388)
T ss_dssp EEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEE-EEEEC-CCCCCCBTTBSSTTCC
T ss_pred EEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceE-Eeccc-cCcccccccccccCCC
Confidence 1 222221100 01123799999888754 44668999999988764 34444 33 478
Q ss_pred EEEecCCCCEEEEEe-CCCcEEEEEcC
Q 019405 306 SIARHPTLPIIASCG-LDSYLRFWDIK 331 (341)
Q Consensus 306 ~~~~~~~~~~l~s~~-~dg~v~iwd~~ 331 (341)
.++|+|||+.|+..+ .++...||.++
T Consensus 355 ~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 355 HPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp CCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred CccCCCCCCEEEEEecCCCceeEEEEE
Confidence 899999999777655 56766666544
No 167
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.74 E-value=9.7e-16 Score=140.28 Aligned_cols=252 Identities=13% Similarity=0.016 Sum_probs=159.4
Q ss_pred ccCCCCCceeEEEeccCCCCCceEEEE--ccCCeEEEeeCCCCcchheeeccCCCCCCCCCCcee---------eEeee-
Q 019405 45 WGDPHSSNCVLAASIDDSQNDPLLAVA--RKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIV---------GLHLF- 112 (341)
Q Consensus 45 ~~~~~~~~~~~~~s~~~~~~~~~l~~~--~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~- 112 (341)
+.+|...+..++++.+.. +++.. ..++...||....+.....+..+. ..+. ...+.
T Consensus 19 ~~~~~~~~~~~~~s~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~--------~~~~~~~~~~~~~~~~~~~ 86 (662)
T 3azo_A 19 VASRSGRPACVGAVGDEV----WWVAPRPAEAGRATLVRRRADGAEESALPAP--------WNVRNRVFEYSGFPWAGVP 86 (662)
T ss_dssp HHHTCSCCEEEEEETTEE----EEEEEETTTTTEEEEEEECTTSCEEESSCTT--------CCBCCCGGGTCCCCEEEEC
T ss_pred HhhcCCccceeEEcCCeE----EEEecCcccCCcEEEEEECCCCCcceeCCCC--------ccccccccccCCccceeee
Confidence 445777888888885433 56666 558899999864443333343321 1111 22233
Q ss_pred eccccccccccce-eEEEcccceeEEEEeeecccccccCCceEEEEEe-e---cCCceEEEEecCCCCEEEEeeCC----
Q 019405 113 KRQREESSSRSRT-LLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV-C---ASGTIAFSKVDISEKFSLFGGKG---- 183 (341)
Q Consensus 113 ~~~~~~~~~~~~~-l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~-~---~~~~i~~~~~~~~~~~l~~~~~d---- 183 (341)
+++++ . ++.+. +....||.++... .+ .+..+.... . +...+..++|+|||+.|++++.+
T Consensus 87 SPDg~-------~~la~~~-~~~~~l~~~~~~~--~g--~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~ 154 (662)
T 3azo_A 87 RPAGG-------PLLVFTH-FGDQRLYAFEPDA--PG--GAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGE 154 (662)
T ss_dssp CSSSS-------CEEEEEB-TTTCCEEEECTTS--TT--CCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSS
T ss_pred ecCCC-------eEEEEEE-CCCCeEEEEcCCC--CC--CCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCC
Confidence 13331 5 44443 3344455543220 00 011111111 1 23467789999999999988876
Q ss_pred ------CeEEEEECCC------CceeeecC-CCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCC--------CeEEEE
Q 019405 184 ------VEVNVWDLDK------CEKIWTAK-PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND--------HQVRLY 242 (341)
Q Consensus 184 ------~~v~i~d~~~------~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d--------~~i~iw 242 (341)
..|++||+.+ ++.. .+. .+ ...+..++| +|||++|+..+.+ ..|++|
T Consensus 155 ~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~---------~~~~~~~~~--SpDG~~la~~~~~~~~~~~~~~~i~~~ 222 (662)
T 3azo_A 155 GPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDA---------HRFVTGPRL--SPDGRQAVWLAWDHPRMPWEGTELKTA 222 (662)
T ss_dssp STTCEEEEEEEEETTSTTTTCGGGSE-ESSCSC---------SSEECCCEE--CTTSSEEEEEEECTTCCTTTCEEEEEE
T ss_pred CCCCceeEEEEEECCCCccccCCcee-EEEecC---------CCcccCceE--CCCCCEEEEEECCCCCCCCCCcEEEEE
Confidence 5899999987 4433 333 21 245778899 9999999987755 379999
Q ss_pred EcC-CCC--ceeEEEEecCCCeEEEEEcCCCceEEEEeCCC--CEEEEECCCCeEEeEEeccccCc--------eeEEEe
Q 019405 243 DTS-AQR--RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG--DLASVDIRTGKLLGCFIGKCSGS--------IRSIAR 309 (341)
Q Consensus 243 d~~-~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~--------i~~~~~ 309 (341)
|+. ++. ........+...+..++|+|+|++++++..++ .|++||+.+++.......+ ... +..++|
T Consensus 223 d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~-~~~~~p~w~~~~~~~~~ 301 (662)
T 3azo_A 223 RVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRRE-EEFAGPLWTPGMRWFAP 301 (662)
T ss_dssp EECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCS-SBSSCCCCSTTCCSEEE
T ss_pred EECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccccc-ccccCccccccCceEeE
Confidence 998 451 32333444567899999999999888888888 6777777677655444332 222 567899
Q ss_pred cCCCCEEEEEeCCCcEEEE--EcCCCc
Q 019405 310 HPTLPIIASCGLDSYLRFW--DIKTRQ 334 (341)
Q Consensus 310 ~~~~~~l~s~~~dg~v~iw--d~~~~~ 334 (341)
+|++.++++++. +.++|| |+.+++
T Consensus 302 ~~~~~~~~~~~~-~~~~l~~~d~~~~~ 327 (662)
T 3azo_A 302 LANGLIAVVHGK-GAAVLGILDPESGE 327 (662)
T ss_dssp CTTSCEEEEEBS-SSCEEEEEETTTTE
T ss_pred eCCCEEEEEEEc-CccEEEEEECCCCc
Confidence 999999999998 999999 555554
No 168
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.73 E-value=6.9e-15 Score=124.70 Aligned_cols=241 Identities=12% Similarity=0.021 Sum_probs=148.0
Q ss_pred eEEEEccC--CeEEEeeC--CCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEee-
Q 019405 67 LLAVARKN--GLTDILNP--LNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE- 141 (341)
Q Consensus 67 ~l~~~~~d--g~i~iw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~- 141 (341)
+|++|+.. +.|.+|++ .+++... +.... . .....+..+.+.+... .+++++.+ .+.+|++.
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~-~~~~~-~---~~~~~~~~~a~spdg~--------~l~~~~~~-~v~~~~~~~ 69 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKL-IKRTE-I---PQDEPISWMTFDHERK--------NIYGAAMK-KWSSFAVKS 69 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEE-EEEEE-C---CTTCCCSEEEECTTSS--------EEEEEEBT-EEEEEEEEE
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEE-eeEEc-c---CCCCCCcEEEECCCCC--------EEEEEccc-eEEEEEECC
Confidence 35666553 56887765 4454321 21100 0 0112344555544433 67777777 89999986
Q ss_pred ecccccccCCceEEEEEeecCCceEEEEecCCCCE--EEEee-------------CCCeEEEEECC-CCceeeecCCCCC
Q 019405 142 VTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKF--SLFGG-------------KGVEVNVWDLD-KCEKIWTAKPPPK 205 (341)
Q Consensus 142 ~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~--l~~~~-------------~d~~v~i~d~~-~~~~~~~~~~~~~ 205 (341)
... ...+......+....++++|++++ ++++. .++.+.+|++. +++....+.....
T Consensus 70 ~g~--------~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~ 141 (365)
T 1jof_A 70 PTE--------IVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEY 141 (365)
T ss_dssp TTE--------EEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEEC
T ss_pred CCC--------EEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEe
Confidence 221 222222221233556889999994 55553 68999999997 4554332221000
Q ss_pred CccCccCCeeeeEEEEEecCCCCEEEEEeC-CCeEEEEEcC-CCCce-eEEEEe--cCCCeEEEEEcCCCceEEEEeC-C
Q 019405 206 NSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DHQVRLYDTS-AQRRP-VMSFDF--RETPIKAVAEEPDSFNIYIGNG-S 279 (341)
Q Consensus 206 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-d~~i~iwd~~-~~~~~-~~~~~~--~~~~v~~~~~~~~~~~l~~g~~-d 279 (341)
.+...+.+++| +|++++|+++.. ++.|++||+. +++.. +..+.. |...+..++|+|+|++|++++. +
T Consensus 142 -----~~~~~~~~~~~--spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~ 214 (365)
T 1jof_A 142 -----QENTGIHGMVF--DPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAG 214 (365)
T ss_dssp -----CTTCCEEEEEE--CTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTT
T ss_pred -----CCCCcceEEEE--CCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCC
Confidence 01234888999 899998887654 6899999998 55431 223331 3566899999999999888775 6
Q ss_pred CCEEEEECC--CCeEEe---EEecc------ccC------ceeEEE-ecCCCCEEEEEeCCC------cEEEEEcC-CCc
Q 019405 280 GDLASVDIR--TGKLLG---CFIGK------CSG------SIRSIA-RHPTLPIIASCGLDS------YLRFWDIK-TRQ 334 (341)
Q Consensus 280 g~i~iwd~~--~~~~~~---~~~~~------~~~------~i~~~~-~~~~~~~l~s~~~dg------~v~iwd~~-~~~ 334 (341)
+.|.+|++. ++++.. .+... +.. .+..++ |+|+|++|++++.+. .|.+|++. +|+
T Consensus 215 ~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~ 294 (365)
T 1jof_A 215 NRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGS 294 (365)
T ss_dssp TEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSC
T ss_pred CeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCC
Confidence 889999765 565432 22211 011 588999 999999887766432 89999996 566
Q ss_pred ee
Q 019405 335 LL 336 (341)
Q Consensus 335 ~~ 336 (341)
..
T Consensus 295 ~~ 296 (365)
T 1jof_A 295 IE 296 (365)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 169
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.73 E-value=8e-15 Score=118.95 Aligned_cols=238 Identities=8% Similarity=-0.032 Sum_probs=166.4
Q ss_pred CceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecc
Q 019405 65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK 144 (341)
Q Consensus 65 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~ 144 (341)
+++|++++.|+.|.+||.++|+.+.++..+. .....++.+.+... .++ +.++.+..++. ..+
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~-------~~~~~~~~~~pdG~--------ilv--s~~~~V~~~d~-~G~ 66 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEK-------GWECNSVAATKAGE--------ILF--SYSKGAKMITR-DGR 66 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECCT-------TCCCCEEEECTTSC--------EEE--ECBSEEEEECT-TSC
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCCc-------cCCCcCeEECCCCC--------EEE--eCCCCEEEECC-CCC
Confidence 4689999999999999999999998887631 01233444433322 444 34666777764 211
Q ss_pred cccccCCceEEEEEeecC--CceEEEEecCCCCEEEEeeC-CCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEE
Q 019405 145 VSAESSCSTVKSWNVCAS--GTIAFSKVDISEKFSLFGGK-GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAF 221 (341)
Q Consensus 145 ~~~~~~~~~v~~~~~~~~--~~i~~~~~~~~~~~l~~~~~-d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 221 (341)
.+|..... ..+.++.+.++|+++++.+. ++.|..+|. +++.++.+....... .+......+++
T Consensus 67 ----------~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~---~~~~~~~~v~~ 132 (276)
T 3no2_A 67 ----------ELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIE---RPHAQFRQINK 132 (276)
T ss_dssp ----------EEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCS---SGGGSCSCCEE
T ss_pred ----------EEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCC---cccccccCceE
Confidence 34554432 46888899999999999887 778888886 677777665322100 01123445566
Q ss_pred EecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccc-
Q 019405 222 LSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC- 300 (341)
Q Consensus 222 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~- 300 (341)
.++++++++...++.|..||.. ++. +..+... ....++...+++..++++..++.|..+|..+|+.+.++....
T Consensus 133 --~~~G~~lv~~~~~~~v~~~d~~-G~~-~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~ 207 (276)
T 3no2_A 133 --NKKGNYLVPLFATSEVREIAPN-GQL-LNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDI 207 (276)
T ss_dssp --CTTSCEEEEETTTTEEEEECTT-SCE-EEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGS
T ss_pred --CCCCCEEEEecCCCEEEEECCC-CCE-EEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCC
Confidence 7899999999999999999988 664 6777654 345677888999999998888899999999999999887431
Q ss_pred ----cCceeEEEecCCCCEEEEEeCC--------CcEEEEEc-CCCceeeee
Q 019405 301 ----SGSIRSIARHPTLPIIASCGLD--------SYLRFWDI-KTRQLLSAV 339 (341)
Q Consensus 301 ----~~~i~~~~~~~~~~~l~s~~~d--------g~v~iwd~-~~~~~~~~~ 339 (341)
...+..++..++|.++++.... +..+++.+ .+|+.+.++
T Consensus 208 ~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~ 259 (276)
T 3no2_A 208 EGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQL 259 (276)
T ss_dssp BSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEE
T ss_pred CCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEe
Confidence 1237888899999988887421 23456655 467766554
No 170
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.73 E-value=1.2e-14 Score=121.23 Aligned_cols=265 Identities=8% Similarity=-0.049 Sum_probs=172.2
Q ss_pred CCCCeEEEEEecCccCccceeeec-c---C--CCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccC
Q 019405 22 SLGLIKVIEARGEHGGVPKVVERW-G---D--PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAG 95 (341)
Q Consensus 22 ~~g~i~~~~~~~~~~g~~~~~~~~-~---~--~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 95 (341)
.++.|.+++.... ++...+ . . .......+++. + +.++++...++.|.+||..+++.+.++...
T Consensus 15 ~~~~l~~~d~~t~-----~~~~~i~~~~n~~~lg~~~~~i~~~--~---~~lyv~~~~~~~v~viD~~t~~~~~~i~~~- 83 (328)
T 3dsm_A 15 SNATLSYYDPATC-----EVENEVFYRANGFKLGDVAQSMVIR--D---GIGWIVVNNSHVIFAIDINTFKEVGRITGF- 83 (328)
T ss_dssp CCBEEEEEETTTT-----EEECSHHHHHHSSCCBSCEEEEEEE--T---TEEEEEEGGGTEEEEEETTTCCEEEEEECC-
T ss_pred CCceEEEEECCCC-----EEhhhhHhhhcCcccCccceEEEEE--C---CEEEEEEcCCCEEEEEECcccEEEEEcCCC-
Confidence 4788888887765 333222 0 0 11122334442 2 235666677899999999999988877531
Q ss_pred CCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecC----CceEEEEec
Q 019405 96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCAS----GTIAFSKVD 171 (341)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~----~~i~~~~~~ 171 (341)
.....+++.+... .+++...++.+.++|..... .+..+..... .....+++
T Consensus 84 --------~~p~~i~~~~~g~--------lyv~~~~~~~v~~iD~~t~~--------~~~~i~~g~~~~~~~~p~~i~~- 138 (328)
T 3dsm_A 84 --------TSPRYIHFLSDEK--------AYVTQIWDYRIFIINPKTYE--------ITGYIECPDMDMESGSTEQMVQ- 138 (328)
T ss_dssp --------SSEEEEEEEETTE--------EEEEEBSCSEEEEEETTTTE--------EEEEEECTTCCTTTCBCCCEEE-
T ss_pred --------CCCcEEEEeCCCe--------EEEEECCCCeEEEEECCCCe--------EEEEEEcCCccccCCCcceEEE-
Confidence 3445555433322 44444478999999875332 2223332210 03445666
Q ss_pred CCCCEEEEee-CCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCC----------CeEE
Q 019405 172 ISEKFSLFGG-KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND----------HQVR 240 (341)
Q Consensus 172 ~~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d----------~~i~ 240 (341)
.++.++++.. .++.|.++|+.+++....+.... ....+++ ++++++++++..+ +.|.
T Consensus 139 ~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~----------~p~~i~~--~~dG~l~v~~~~~~~~~~~~~~~~~v~ 206 (328)
T 3dsm_A 139 YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGI----------QPTSLVM--DKYNKMWTITDGGYEGSPYGYEAPSLY 206 (328)
T ss_dssp ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSS----------CBCCCEE--CTTSEEEEEBCCBCTTCSSCBCCCEEE
T ss_pred ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCC----------CccceEE--cCCCCEEEEECCCccCCccccCCceEE
Confidence 3344444433 48899999999998877665421 2456788 8888877776554 7899
Q ss_pred EEEcCCCCceeEEEEec-CCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeE--EeccccCceeEEEecC-CCCEE
Q 019405 241 LYDTSAQRRPVMSFDFR-ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGC--FIGKCSGSIRSIARHP-TLPII 316 (341)
Q Consensus 241 iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~--~~~~~~~~i~~~~~~~-~~~~l 316 (341)
++|..+++. ...+... ......++++|+++.|+++.. .|.+||..+++.... +... ......++++| ++.++
T Consensus 207 ~id~~t~~v-~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~-~~~p~gi~vdp~~g~ly 282 (328)
T 3dsm_A 207 RIDAETFTV-EKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFR-DTKYYGLTVNPNNGEVY 282 (328)
T ss_dssp EEETTTTEE-EEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCC-SSCEEEEEECTTTCCEE
T ss_pred EEECCCCeE-EEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCC-CCceEEEEEcCCCCeEE
Confidence 999987653 4455432 236789999999999888765 899999998876421 2211 35688999999 55566
Q ss_pred EEE----eCCCcEEEEEcCCCceeeee
Q 019405 317 ASC----GLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 317 ~s~----~~dg~v~iwd~~~~~~~~~~ 339 (341)
++. ..++.|.+||.. |+.+.++
T Consensus 283 va~~~~y~~~~~V~v~d~~-g~~~~~i 308 (328)
T 3dsm_A 283 VADAIDYQQQGIVYRYSPQ-GKLIDEF 308 (328)
T ss_dssp EEECTTSSSEEEEEEECTT-CCEEEEE
T ss_pred EEcccccccCCEEEEECCC-CCEEEEE
Confidence 666 578899999998 9988876
No 171
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.72 E-value=1.2e-15 Score=130.38 Aligned_cols=235 Identities=10% Similarity=0.010 Sum_probs=147.6
Q ss_pred CCCCCceEEEEcc-CC--eEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEE
Q 019405 61 DSQNDPLLAVARK-NG--LTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASM 137 (341)
Q Consensus 61 ~~~~~~~l~~~~~-dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i 137 (341)
.+|+|++|+.++. ++ .|.+||+.+++.......+ ...+....|.+... .|+.+..++.+.+
T Consensus 43 ~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~--------~~~~~~~~~spdg~--------~l~~~~~~~~l~~ 106 (388)
T 3pe7_A 43 FTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGR--------GDNTFGGFLSPDDD--------ALFYVKDGRNLMR 106 (388)
T ss_dssp BCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSS--------CBCSSSCEECTTSS--------EEEEEETTTEEEE
T ss_pred CCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCC--------CCCccceEEcCCCC--------EEEEEeCCCeEEE
Confidence 3445558888876 66 4888899887765444332 12222334444444 7888888889999
Q ss_pred EEeeecccccccCCceEEEEEeecCCceEE--EEecCCCCEEEEe----------------------eCCCeEEEEECCC
Q 019405 138 RSIEVTKVSAESSCSTVKSWNVCASGTIAF--SKVDISEKFSLFG----------------------GKGVEVNVWDLDK 193 (341)
Q Consensus 138 ~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~--~~~~~~~~~l~~~----------------------~~d~~v~i~d~~~ 193 (341)
|++.... ...++.. +...+.. ..+++++++++.. ..+..|.+||+.+
T Consensus 107 ~d~~~g~--------~~~~~~~-~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 177 (388)
T 3pe7_A 107 VDLATLE--------ENVVYQV-PAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKT 177 (388)
T ss_dssp EETTTCC--------EEEEEEC-CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTT
T ss_pred EECCCCc--------ceeeeec-hhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCC
Confidence 9986432 3334433 2233322 2348899888742 2446899999998
Q ss_pred CceeeecCCCCCCccCccCCeeeeEEEEEecC-CCCEEEEEeCC------CeEEEEEcCCCCceeEEEEecC--CCeEEE
Q 019405 194 CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTND------HQVRLYDTSAQRRPVMSFDFRE--TPIKAV 264 (341)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~--~~v~~~ 264 (341)
++....... ...+..+.| +| +++.|+....+ ..|.++|....+ ...+..+. ..+..+
T Consensus 178 g~~~~l~~~----------~~~~~~~~~--sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~--~~~l~~~~~~~~~~~~ 243 (388)
T 3pe7_A 178 GESTVILQE----------NQWLGHPIY--RPYDDSTVAFCHEGPHDLVDARMWLINEDGTN--MRKVKTHAEGESCTHE 243 (388)
T ss_dssp CCEEEEEEE----------SSCEEEEEE--ETTEEEEEEEEECSCTTTSSCSEEEEETTSCC--CEESCCCCTTEEEEEE
T ss_pred CceEEeecC----------CccccccEE--CCCCCCEEEEEEecCCCCCcceEEEEeCCCCc--eEEeeeCCCCcccccc
Confidence 865443322 134788899 89 99988877653 378888876543 34444343 257788
Q ss_pred EEcCCCceEEEEeC-CC----CEEEEECCCCeEE--eEEeccccC---ceeEEEecCCCCEEEEE---------eCCCcE
Q 019405 265 AEEPDSFNIYIGNG-SG----DLASVDIRTGKLL--GCFIGKCSG---SIRSIARHPTLPIIASC---------GLDSYL 325 (341)
Q Consensus 265 ~~~~~~~~l~~g~~-dg----~i~iwd~~~~~~~--~~~~~~~~~---~i~~~~~~~~~~~l~s~---------~~dg~v 325 (341)
+|+|+|+.|+..+. ++ .|++||+.+++.. ..+.++ .. ....++|+|+|+.|+.. ..+..|
T Consensus 244 ~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i 322 (388)
T 3pe7_A 244 FWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPAC-SHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFL 322 (388)
T ss_dssp EECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCE-EEEEECTTSSEEEEEECCC------------CCCCEE
T ss_pred eECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCc-eeeeecCCCCeEccCCCcceeEeeeccccccCCCCEE
Confidence 99999987765443 22 3999999988743 333321 10 12234799999977754 456689
Q ss_pred EEEEcCCCce
Q 019405 326 RFWDIKTRQL 335 (341)
Q Consensus 326 ~iwd~~~~~~ 335 (341)
++||+.+++.
T Consensus 323 ~~~d~~~~~~ 332 (388)
T 3pe7_A 323 YVFNMKNGTQ 332 (388)
T ss_dssp EEEETTTTEE
T ss_pred EEEeccCCce
Confidence 9999998764
No 172
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.70 E-value=1.3e-13 Score=122.63 Aligned_cols=292 Identities=14% Similarity=0.084 Sum_probs=184.6
Q ss_pred ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCC--CCcchheee
Q 019405 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPL--NGDLRVAIS 92 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~--~~~~~~~~~ 92 (341)
..+++...+|.|.+++.... +++.++... .....++|++|++ ++++++.|+.|.+||+. +++.+.++.
T Consensus 168 ~~~V~~~~~~~V~viD~~t~-----~v~~~i~~g-~~p~~v~~SpDGr----~lyv~~~dg~V~viD~~~~t~~~v~~i~ 237 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTY-----EIKTVLDTG-YAVHISRLSASGR----YLFVIGRDGKVNMIDLWMKEPTTVAEIK 237 (567)
T ss_dssp EEEEEETTTTEEEEEETTTC-----CEEEEEECS-SCEEEEEECTTSC----EEEEEETTSEEEEEETTSSSCCEEEEEE
T ss_pred eEEEEeCCCCeEEEEECCCC-----eEEEEEeCC-CCccceEECCCCC----EEEEEcCCCeEEEEECCCCCCcEeEEEe
Confidence 44567778899999998775 566565432 2345677887766 88999999999999995 777766665
Q ss_pred ccCCCCCCCCCCceeeEeeee---ccccccccccceeEEEcccceeEEEEeeecccc----c------------------
Q 019405 93 NAGDSGAQPEDDGIVGLHLFK---RQREESSSRSRTLLTCTTKGKASMRSIEVTKVS----A------------------ 147 (341)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~----~------------------ 147 (341)
.. .....+.+.+ ++++ ..+++...++.+.++|....+.. .
T Consensus 238 ~G---------~~P~~ia~s~~~~pDGk------~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~ 302 (567)
T 1qks_A 238 IG---------SEARSIETSKMEGWEDK------YAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAA 302 (567)
T ss_dssp CC---------SEEEEEEECCSTTCTTT------EEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEE
T ss_pred cC---------CCCceeEEccccCCCCC------EEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEE
Confidence 41 2334455542 2221 03444445577777774322110 0
Q ss_pred -------------ccCCceEEEEEee-----------cCCceEEEEecCCCCEEEEee-CCCeEEEEECCCCceeeecCC
Q 019405 148 -------------ESSCSTVKSWNVC-----------ASGTIAFSKVDISEKFSLFGG-KGVEVNVWDLDKCEKIWTAKP 202 (341)
Q Consensus 148 -------------~~~~~~v~~~~~~-----------~~~~i~~~~~~~~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~ 202 (341)
....+.+.+++.. .......+.|+|++++++++. .++.|.++|+.+++....+..
T Consensus 303 i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~v 382 (567)
T 1qks_A 303 ILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDT 382 (567)
T ss_dssp EEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred EEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEec
Confidence 0011233333321 123445678999999887655 578999999999987766653
Q ss_pred -CCCCccCccCCeeeeEEEEEecCCCCEE-EEEe-CCCeEEEEEcCCCC------ceeEEEEecCCCeEEEEEcCCCceE
Q 019405 203 -PPKNSLGIFTPTWFTSAAFLSIDDHRKF-VAGT-NDHQVRLYDTSAQR------RPVMSFDFRETPIKAVAEEPDSFNI 273 (341)
Q Consensus 203 -~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~~~~-~d~~i~iwd~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l 273 (341)
... .|++ ....|. +|++..+ +++. .++.|.++|....+ +.++.+......-..+..+|+++++
T Consensus 383 gg~~-----Phpg--~g~~~~-~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l 454 (567)
T 1qks_A 383 GGQT-----PHPG--RGANFV-HPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYL 454 (567)
T ss_dssp SSSS-----BCCT--TCEEEE-ETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEE
T ss_pred cCcC-----CCCc--cceeeE-CCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeE
Confidence 221 1222 122232 5664444 4443 46899999988721 2366666543333557899999999
Q ss_pred EEEeC-------CCCEEEEECCCC-----eE-EeEEec-------cccCceeEEEecCCCCEEEEEe-----CCCcEEEE
Q 019405 274 YIGNG-------SGDLASVDIRTG-----KL-LGCFIG-------KCSGSIRSIARHPTLPIIASCG-----LDSYLRFW 328 (341)
Q Consensus 274 ~~g~~-------dg~i~iwd~~~~-----~~-~~~~~~-------~~~~~i~~~~~~~~~~~l~s~~-----~dg~v~iw 328 (341)
.+... .+.|.++|+.+. .. ...+.- .....+..+.|+|+|..+..+. .++.|.++
T Consensus 455 ~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~ 534 (567)
T 1qks_A 455 YVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVV 534 (567)
T ss_dssp EEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEE
T ss_pred EEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEE
Confidence 98763 458999999876 21 122220 0135788999999999776653 37899999
Q ss_pred EcCCCceeeee
Q 019405 329 DIKTRQLLSAV 339 (341)
Q Consensus 329 d~~~~~~~~~~ 339 (341)
|.++++.+.++
T Consensus 535 D~~t~~~~~~i 545 (567)
T 1qks_A 535 DDKTLELKHVI 545 (567)
T ss_dssp ETTTTEEEEEE
T ss_pred ECCCceEEEEe
Confidence 99999988776
No 173
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.68 E-value=8.9e-15 Score=123.63 Aligned_cols=233 Identities=13% Similarity=0.119 Sum_probs=147.2
Q ss_pred CceeEEEeccCCCCCceEEEEcc--CCeEEEeeCCCCcchhe-eeccCCCCCCCCCCceeeEeeeeccccccccccceeE
Q 019405 51 SNCVLAASIDDSQNDPLLAVARK--NGLTDILNPLNGDLRVA-ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL 127 (341)
Q Consensus 51 ~~~~~~~s~~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 127 (341)
....++++++++ +|+++.. +++|.+||+.+++.+.. +.. ........++.... .++
T Consensus 109 ~p~~i~~spdg~----~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~----------~~~~~v~~~p~~~~-------~~~ 167 (361)
T 2oiz_A 109 YDGLFRQTTDGK----FIVLQNASPATSIGIVDVAKGDYVEDVTAA----------AGCWSVIPQPNRPR-------SFM 167 (361)
T ss_dssp CGGGEEECTTSS----EEEEEEESSSEEEEEEETTTTEEEEEEGGG----------TTEEEEEECTTSSS-------EEE
T ss_pred CcceEEECCCCC----EEEEECCCCCCeEEEEECCCCcEEEEEecC----------CCcceeEEcCCCCe-------eEE
Confidence 455677777766 7888764 68999999999887766 543 11111223333221 677
Q ss_pred EEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCcee--eecCCCCC
Q 019405 128 TCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI--WTAKPPPK 205 (341)
Q Consensus 128 ~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~--~~~~~~~~ 205 (341)
+.+.||.+.+++++........ ......|+... .+ ..+.+++++..++..+.++.|.++|+...... ..+.....
T Consensus 168 ~~~~dg~~~~v~~~~~g~~~~~-~~~~~~~~~~~-~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~ 244 (361)
T 2oiz_A 168 TICGDGGLLTINLGEDGKVASQ-SRSKQMFSVKD-DP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLND 244 (361)
T ss_dssp EEETTSSEEEEEECTTSSEEEE-EECCCCSCTTT-SC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCH
T ss_pred EECCCCcEEEEEECCCCcEeee-ccccceEcCCC-Cc-eEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCc
Confidence 8888999888887532110000 00001222211 11 12233566777777788899999998754321 11111000
Q ss_pred CccCc-cCCeeeeEEEEEecCCCCEEEEEeC-----------CCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceE
Q 019405 206 NSLGI-FTPTWFTSAAFLSIDDHRKFVAGTN-----------DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNI 273 (341)
Q Consensus 206 ~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~-----------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 273 (341)
..... ..+.....++| +|+++.++++.. .+.|.+||+.+.+. +..+..+. ...++|+|+|++|
T Consensus 245 ~~~~~~~~p~g~~~~a~--~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~-v~~i~~~~--p~~ia~spdg~~l 319 (361)
T 2oiz_A 245 EDKAKNWVPGGYNLVGL--HRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQR-VARIPGRD--ALSMTIDQQRNLM 319 (361)
T ss_dssp HHHHTTCEECCSSCEEE--ETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEE-EEEEECTT--CCEEEEETTTTEE
T ss_pred cccccccccCCeeEEEE--ecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcE-EEEEecCC--eeEEEECCCCCEE
Confidence 00000 00111223678 788888777643 35899999998764 78888776 8999999999999
Q ss_pred EEEeCCCCEEEEECCCC--eEEeEEeccccCceeEEEecCCCC
Q 019405 274 YIGNGSGDLASVDIRTG--KLLGCFIGKCSGSIRSIARHPTLP 314 (341)
Q Consensus 274 ~~g~~dg~i~iwd~~~~--~~~~~~~~~~~~~i~~~~~~~~~~ 314 (341)
++++. +.|.+||..++ +.+..+... ......++++|+|.
T Consensus 320 ~v~n~-~~v~v~D~~t~~l~~~~~i~~~-G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 320 LTLDG-GNVNVYDISQPEPKLLRTIEGA-AEASLQVQFHPVGG 360 (361)
T ss_dssp EEECS-SCEEEEECSSSSCEEEEEETTS-CSSEEEEEECCCSC
T ss_pred EEeCC-CeEEEEECCCCcceeeEEeccC-CCCcEEEEecCCCC
Confidence 99887 99999999999 999887655 56778899999985
No 174
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.68 E-value=3.7e-14 Score=114.89 Aligned_cols=243 Identities=7% Similarity=-0.100 Sum_probs=155.0
Q ss_pred CceeEEEeccCCCCCceEE-EEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEE
Q 019405 51 SNCVLAASIDDSQNDPLLA-VARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC 129 (341)
Q Consensus 51 ~~~~~~~s~~~~~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (341)
....+++++++. +++ +...++.|.+|+..+.... .+.. .....+.++.+-+... .+++.
T Consensus 25 ~p~~i~~~~~g~----l~v~~~~~~~~i~~~~~~~~~~~-~~~~-------~~~~~p~~i~~~~~g~--------l~v~~ 84 (270)
T 1rwi_B 25 SPSGVAVDSAGN----VYVTSEGMYGRVVKLATGSTGTT-VLPF-------NGLYQPQGLAVDGAGT--------VYVTD 84 (270)
T ss_dssp CEEEEEECTTCC----EEEEECSSSCEEEEECC-----E-ECCC-------CSCCSCCCEEECTTCC--------EEEEE
T ss_pred CccceEECCCCC----EEEEccCCCCcEEEecCCCcccc-eEee-------CCcCCcceeEECCCCC--------EEEEc
Confidence 344566665544 555 4367899999997654321 1111 1112344444433222 44444
Q ss_pred cccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccC
Q 019405 130 TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLG 209 (341)
Q Consensus 130 ~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~ 209 (341)
. ++.+.+|+.... .+..+.......+..++++++++++++...++.|.+|+..+..........
T Consensus 85 ~-~~~i~~~d~~~~---------~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~------ 148 (270)
T 1rwi_B 85 F-NNRVVTLAAGSN---------NQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTG------ 148 (270)
T ss_dssp T-TTEEEEECTTCS---------CCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCS------
T ss_pred C-CCEEEEEeCCCc---------eEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeecccc------
Confidence 4 788888875322 222222222256789999999998887777889999986654433221111
Q ss_pred ccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCC
Q 019405 210 IFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT 289 (341)
Q Consensus 210 ~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~ 289 (341)
...+.++++ +++++++++...++.|.+||...... ......+...+..++++++|.++++...++.|.+||...
T Consensus 149 ---~~~p~~i~~--~~~g~l~v~~~~~~~i~~~~~~~~~~-~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~ 222 (270)
T 1rwi_B 149 ---LNDPDGVAV--DNSGNVYVTDTDNNRVVKLEAESNNQ-VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS 222 (270)
T ss_dssp ---CCSCCCEEE--CTTCCEEEEEGGGTEEEEECTTTCCE-EECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTC
T ss_pred ---CCCceeEEE--eCCCCEEEEECCCCEEEEEecCCCce-EeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCC
Confidence 123677888 88888777777788999999876442 221122335688999999997777777788999999876
Q ss_pred CeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCcee
Q 019405 290 GKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLL 336 (341)
Q Consensus 290 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 336 (341)
.........+ ...+.+++++++|+++++...++.|+++++...+..
T Consensus 223 ~~~~~~~~~~-~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~~ 268 (270)
T 1rwi_B 223 TTSTVLPFTG-LNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHHH 268 (270)
T ss_dssp SCCEECCCCS-CSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGSC
T ss_pred CcceeeccCC-CCCceeEEECCCCCEEEEECCCCEEEEEcCCCcccc
Confidence 5433322222 356899999999998889889999999999876654
No 175
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.67 E-value=5.1e-14 Score=128.89 Aligned_cols=283 Identities=11% Similarity=0.008 Sum_probs=162.3
Q ss_pred eeeee--cCCCCeEEEEEecCccCccceeeeccCCCCCce---------eEEEeccCCCCCce-EEEEcc-CCeEEEeeC
Q 019405 16 RALTF--DSLGLIKVIEARGEHGGVPKVVERWGDPHSSNC---------VLAASIDDSQNDPL-LAVARK-NGLTDILNP 82 (341)
Q Consensus 16 ~~~~~--~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~---------~~~~s~~~~~~~~~-l~~~~~-dg~i~iw~~ 82 (341)
.++.. +.+|...+|..... +. ...+..+...+. ..+++ .+|+|++ |+.+.. +..|.+|++
T Consensus 37 ~~~~~~~~~~~~~~l~~~~~~--~~---~~~l~~~~~~~~~~~~~~~~~~~~~~--~SPDg~~~la~~~~~~~~l~~~~~ 109 (662)
T 3azo_A 37 WWVAPRPAEAGRATLVRRRAD--GA---EESALPAPWNVRNRVFEYSGFPWAGV--PRPAGGPLLVFTHFGDQRLYAFEP 109 (662)
T ss_dssp EEEEEETTTTTEEEEEEECTT--SC---EEESSCTTCCBCCCGGGTCCCCEEEE--CCSSSSCEEEEEBTTTCCEEEECT
T ss_pred EEEecCcccCCcEEEEEECCC--CC---cceeCCCCccccccccccCCccceee--eecCCCeEEEEEECCCCeEEEEcC
Confidence 34444 45677788886332 32 223444443333 23333 2345557 676553 566777776
Q ss_pred C--C-CcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEccc----------ceeEEEEeeeccccccc
Q 019405 83 L--N-GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK----------GKASMRSIEVTKVSAES 149 (341)
Q Consensus 83 ~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------g~~~i~~~~~~~~~~~~ 149 (341)
. . ++ ...+.... ...+...+..+.|.+... .|+.++.+ ..+.+|++......
T Consensus 110 ~~~g~~~-~~~l~~~~---~~~~~~~~~~~~~spDg~--------~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--- 174 (662)
T 3azo_A 110 DAPGGAV-PRPLTPVS---AVGGGLRWADPVLLPERG--------EVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAA--- 174 (662)
T ss_dssp TSTTCCC-CEECSCCC---CSTTCEEEEEEEEETTTT--------EEEEEEEEECSSSTTCEEEEEEEEETTSTTTT---
T ss_pred CCCCCCC-CEeccCCc---cCCCCccccCcEECCCCC--------EEEEEEecccCCCCCCceeEEEEEECCCCccc---
Confidence 5 2 33 22332210 000223455555555444 77777765 46777776541000
Q ss_pred CCceEEEEEeecCCceEEEEecCCCCEEEEeeCC--------CeEEEEECC-CCc--eeeecCCCCCCccCccCCeeeeE
Q 019405 150 SCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKG--------VEVNVWDLD-KCE--KIWTAKPPPKNSLGIFTPTWFTS 218 (341)
Q Consensus 150 ~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------~~v~i~d~~-~~~--~~~~~~~~~~~~~~~~~~~~v~~ 218 (341)
..+.++.....+...+..++|+|||++|+.++.+ ..|++||+. +++ ....+... +...+..
T Consensus 175 ~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~--------~~~~~~~ 246 (662)
T 3azo_A 175 DRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG--------PEEAIAQ 246 (662)
T ss_dssp CGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEE--------TTBCEEE
T ss_pred cCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCC--------CCceEcc
Confidence 0011222110223466778999999999987755 379999998 561 22222211 1244788
Q ss_pred EEEEecCCCCEEEEEeCCC--eEEEEEcCCCCceeEEEEecCCC---------eEEEEEcCCCceEEEEeCCCCEEEE--
Q 019405 219 AAFLSIDDHRKFVAGTNDH--QVRLYDTSAQRRPVMSFDFRETP---------IKAVAEEPDSFNIYIGNGSGDLASV-- 285 (341)
Q Consensus 219 ~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~---------v~~~~~~~~~~~l~~g~~dg~i~iw-- 285 (341)
+.| +|++++++++..++ .|.+||+.+++ ...+..+... +..++|+|+++++++++. +.++||
T Consensus 247 ~~~--spdg~l~~~~~~~~~~~l~~~~~~~~~--~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 321 (662)
T 3azo_A 247 AEW--APDGSLIVATDRTGWWNLHRVDPATGA--ATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGIL 321 (662)
T ss_dssp EEE--CTTSCEEEEECTTSSCEEEEECTTTCC--EEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEE
T ss_pred eEE--CCCCeEEEEECCCCCeEEEEEECCCCc--eeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEE
Confidence 999 89999888888888 56666665543 2333222211 467899999999999988 999999
Q ss_pred ECCCCeEEeEEeccccCceeEE-EecCCCCEEEEEeCCC--cEEEEEcCCCce
Q 019405 286 DIRTGKLLGCFIGKCSGSIRSI-ARHPTLPIIASCGLDS--YLRFWDIKTRQL 335 (341)
Q Consensus 286 d~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~l~s~~~dg--~v~iwd~~~~~~ 335 (341)
|+.+++ +..+..+ ...+..+ +++++.-++++++.+. .|.++|+.+++.
T Consensus 322 d~~~~~-~~~l~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~ 372 (662)
T 3azo_A 322 DPESGE-LVDAAGP-WTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRA 372 (662)
T ss_dssp ETTTTE-EEECCSS-CCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred ECCCCc-EEEecCC-CCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCce
Confidence 666565 5667666 6677766 5443333445555554 455667767654
No 176
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.67 E-value=4.7e-13 Score=111.87 Aligned_cols=251 Identities=11% Similarity=0.012 Sum_probs=155.7
Q ss_pred cCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCC
Q 019405 21 DSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQ 100 (341)
Q Consensus 21 ~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 100 (341)
..++.++.|. . +....+..+......++|++++ .+++++..++.|.+||.++++.......
T Consensus 24 ~~~~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~g----~l~~~~~~~~~i~~~d~~~~~~~~~~~~------- 84 (333)
T 2dg1_A 24 ISESELQTIT---A-----EPWLEISKKGLQLEGLNFDRQG----QLFLLDVFEGNIFKINPETKEIKRPFVS------- 84 (333)
T ss_dssp CCGGGSCEEE---C-----EEEEEEESSCCCEEEEEECTTS----CEEEEETTTCEEEEECTTTCCEEEEEEC-------
T ss_pred eecccCcccc---c-----ceeEEEeccCccccCcEECCCC----CEEEEECCCCEEEEEeCCCCcEEEEeeC-------
Confidence 4566667771 1 1223344444455667776544 4677888899999999987765443322
Q ss_pred CCCCceeeEeeeeccccccccccceeEEEccc----ceeEEEEeeecccccccCCceEEEEE-eecCCceEEEEecCCCC
Q 019405 101 PEDDGIVGLHLFKRQREESSSRSRTLLTCTTK----GKASMRSIEVTKVSAESSCSTVKSWN-VCASGTIAFSKVDISEK 175 (341)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----g~~~i~~~~~~~~~~~~~~~~v~~~~-~~~~~~i~~~~~~~~~~ 175 (341)
....+.++.+.+... .+++...+ +.+.+|+.+... ...+.. ......+..+.++|+++
T Consensus 85 -~~~~~~~i~~~~dg~--------l~v~~~~~~~~~~~i~~~d~~~~~--------~~~~~~~~~~~~~~~~i~~d~~g~ 147 (333)
T 2dg1_A 85 -HKANPAAIKIHKDGR--------LFVCYLGDFKSTGGIFAATENGDN--------LQDIIEDLSTAYCIDDMVFDSKGG 147 (333)
T ss_dssp -SSSSEEEEEECTTSC--------EEEEECTTSSSCCEEEEECTTSCS--------CEEEECSSSSCCCEEEEEECTTSC
T ss_pred -CCCCcceEEECCCCc--------EEEEeCCCCCCCceEEEEeCCCCE--------EEEEEccCccCCcccceEECCCCC
Confidence 124566666543322 55555544 577777754322 111211 11235688999999998
Q ss_pred EEEEeeC------CCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEE-EEeCCCeEEEEEcCC-C
Q 019405 176 FSLFGGK------GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV-AGTNDHQVRLYDTSA-Q 247 (341)
Q Consensus 176 ~l~~~~~------d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-~~~~d~~i~iwd~~~-~ 247 (341)
++++... .+.|..+|..+++....... ...+..++| +|+++.|+ +...++.|.+||+.+ +
T Consensus 148 l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----------~~~~~~i~~--~~dg~~l~v~~~~~~~i~~~d~~~~g 215 (333)
T 2dg1_A 148 FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN----------ISVANGIAL--STDEKVLWVTETTANRLHRIALEDDG 215 (333)
T ss_dssp EEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE----------ESSEEEEEE--CTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred EEEEeccccccCCCceEEEEeCCCCEEEEeecC----------CCcccceEE--CCCCCEEEEEeCCCCeEEEEEecCCC
Confidence 8776653 35677777655443322111 123678889 88988654 445678999999964 2
Q ss_pred CceeEEE-----Eec--CCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccC------ceeEEEecCCCC
Q 019405 248 RRPVMSF-----DFR--ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSG------SIRSIARHPTLP 314 (341)
Q Consensus 248 ~~~~~~~-----~~~--~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~------~i~~~~~~~~~~ 314 (341)
.. +..+ ... ...+..++++++|+++++...++.|.+||. +++.+..+..+ .. .+.+++|+|++.
T Consensus 216 ~~-~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~-~~~~g~~~~~~~~~~~~dg~ 292 (333)
T 2dg1_A 216 VT-IQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIP-GRDEGHMLRSTHPQFIPGTN 292 (333)
T ss_dssp SS-EEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECT-TGGGTCSCBCCEEEECTTSC
T ss_pred cC-cccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcC-CCccccccCcceEEECCCCC
Confidence 22 2211 111 135778999999988887777889999998 57777666644 22 689999999987
Q ss_pred EEEEEeCC
Q 019405 315 IIASCGLD 322 (341)
Q Consensus 315 ~l~s~~~d 322 (341)
.|+.++.+
T Consensus 293 ~L~v~~~~ 300 (333)
T 2dg1_A 293 QLIICSND 300 (333)
T ss_dssp EEEEEEEC
T ss_pred EEEEEeCc
Confidence 76655554
No 177
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.66 E-value=6.6e-14 Score=119.79 Aligned_cols=235 Identities=8% Similarity=-0.094 Sum_probs=140.4
Q ss_pred EEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceee---Ee---------------eeeccc
Q 019405 55 LAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVG---LH---------------LFKRQR 116 (341)
Q Consensus 55 ~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---------------~~~~~~ 116 (341)
..|++++. +|+.++.++.|++||+.+++......... ..... +. .+.++.
T Consensus 86 ~~~spdg~----~l~~~~~~~~l~~~d~~~~~~~~~~~~~~--------~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg 153 (396)
T 3c5m_A 86 GFISTDER----AFFYVKNELNLMKVDLETLEEQVIYTVDE--------EWKGYGTWVANSDCTKLVGIEILKRDWQPLT 153 (396)
T ss_dssp CEECTTSS----EEEEEETTTEEEEEETTTCCEEEEEECCT--------TEEEEEEEEECTTSSEEEEEEEEGGGCCCCC
T ss_pred ceECCCCC----EEEEEEcCCcEEEEECCCCCcEEEEeccc--------ccCCCCCEEEeccCCccccccccccccCCCC
Confidence 55665555 89999889999999998876554443211 10000 00 011111
Q ss_pred cccccccceeEEE-----cccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecC-CCCEEEEeeCC------C
Q 019405 117 EESSSRSRTLLTC-----TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGKG------V 184 (341)
Q Consensus 117 ~~~~~~~~~l~~~-----~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d------~ 184 (341)
. .++.. ..+..+.+|++.... ...+. .+...+..+.|+| +++.|+..+.+ .
T Consensus 154 ~-------~~~~~~~~~~~~~~~l~~~d~~~g~--------~~~~~--~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~ 216 (396)
T 3c5m_A 154 S-------WEKFAEFYHTNPTCRLIKVDIETGE--------LEVIH--QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDA 216 (396)
T ss_dssp S-------HHHHHHHHHTCCCEEEEEEETTTCC--------EEEEE--EESSCEEEEEEETTEEEEEEEEECSCSSSCSC
T ss_pred c-------ceeeeeeccCCCcceEEEEECCCCc--------EEeec--cCCcccccceECCCCCCEEEEEecCCCCCCCc
Confidence 0 12211 234456666653221 11222 2455688899999 78877765543 3
Q ss_pred eEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCC-----CeEEEEEcCCCCceeEEEEecCC
Q 019405 185 EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-----HQVRLYDTSAQRRPVMSFDFRET 259 (341)
Q Consensus 185 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~ 259 (341)
.|.+||+..++... +..+.. ...+..++| +|++++|+..+.+ +.|++||+.+++. ..+....
T Consensus 217 ~l~~~d~~~~~~~~-l~~~~~-------~~~~~~~~~--spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~--~~l~~~~- 283 (396)
T 3c5m_A 217 RMWLVNEDGSNVRK-IKEHAE-------GESCTHEFW--IPDGSAMAYVSYFKGQTDRVIYKANPETLEN--EEVMVMP- 283 (396)
T ss_dssp CCEEEETTSCCCEE-SSCCCT-------TEEEEEEEE--CTTSSCEEEEEEETTTCCEEEEEECTTTCCE--EEEEECC-
T ss_pred eEEEEECCCCceeE-eeccCC-------CccccceEE--CCCCCEEEEEecCCCCccceEEEEECCCCCe--EEeeeCC-
Confidence 68888987654322 222110 134778899 8999988776544 4599999987653 2232222
Q ss_pred CeEEEEEcC-CCceEEEEe----------------CCCCEEEEECCCCeEEeEEeccccC-----------ceeEEEecC
Q 019405 260 PIKAVAEEP-DSFNIYIGN----------------GSGDLASVDIRTGKLLGCFIGKCSG-----------SIRSIARHP 311 (341)
Q Consensus 260 ~v~~~~~~~-~~~~l~~g~----------------~dg~i~iwd~~~~~~~~~~~~~~~~-----------~i~~~~~~~ 311 (341)
... +.|+| +|++++.++ .+..|++||+.+++.. .+..+ .. .+..++|+|
T Consensus 284 ~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~~~~~~~~~~~~~~~~s~ 360 (396)
T 3c5m_A 284 PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKH-STSWDVLDGDRQITHPHPSFTP 360 (396)
T ss_dssp SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEEC-CCCCCCBTTBSSTTCCCCEECT
T ss_pred CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCC-CCccccccccccCCCCCceEcc
Confidence 233 89999 999888754 3467999999887753 34433 32 256789999
Q ss_pred CCCEEEEEeC-CCc--EEEEEcCCCc
Q 019405 312 TLPIIASCGL-DSY--LRFWDIKTRQ 334 (341)
Q Consensus 312 ~~~~l~s~~~-dg~--v~iwd~~~~~ 334 (341)
+|+.|+.++. ++. |.+.|+.+++
T Consensus 361 dg~~l~~~s~~~~~~~l~~~~~~~~~ 386 (396)
T 3c5m_A 361 NDDGVLFTSDFEGVPAIYIADVPESY 386 (396)
T ss_dssp TSSEEEEEECTTSSCEEEEEECCTTC
T ss_pred CCCeEEEEecCCCCceEEEEEEcccc
Confidence 9998877664 454 4445555554
No 178
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.66 E-value=3.9e-14 Score=130.62 Aligned_cols=244 Identities=11% Similarity=-0.017 Sum_probs=158.6
Q ss_pred CceeEEEeccCCCCCceEEEEccCC-----eEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccce
Q 019405 51 SNCVLAASIDDSQNDPLLAVARKNG-----LTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT 125 (341)
Q Consensus 51 ~~~~~~~s~~~~~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (341)
.+..++||+|++ +||.+..++ .|++||+.+++.+...... ..+..+.|.+... .
T Consensus 126 ~~~~~~~SPDg~----~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~---------~~~~~~~wspDg~--------~ 184 (710)
T 2xdw_A 126 ALRGYAFSEDGE----YFAYGLSASGSDWVTIKFMKVDGAKELPDVLER---------VKFSCMAWTHDGK--------G 184 (710)
T ss_dssp EEEEEEECTTSS----EEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE---------ECSCCEEECTTSS--------E
T ss_pred EEEEEEECCCCC----EEEEEEcCCCCceEEEEEEECCCCCCCcccccC---------cccceEEEEeCCC--------E
Confidence 344555665554 888766543 8999999988765532221 1133455554444 6
Q ss_pred eEEEcccce----------------eEEEEeeecccccccCCceEEEEEee-cCCceEEEEecCCCCEEEEeeC-----C
Q 019405 126 LLTCTTKGK----------------ASMRSIEVTKVSAESSCSTVKSWNVC-ASGTIAFSKVDISEKFSLFGGK-----G 183 (341)
Q Consensus 126 l~~~~~~g~----------------~~i~~~~~~~~~~~~~~~~v~~~~~~-~~~~i~~~~~~~~~~~l~~~~~-----d 183 (341)
|+.++.++. +.+|++..... ....++... +...+..+.|+||+++|+..+. +
T Consensus 185 l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~------~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~ 258 (710)
T 2xdw_A 185 MFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQS------EDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPV 258 (710)
T ss_dssp EEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGG------GCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSC
T ss_pred EEEEEECCccccccccccccCCCCEEEEEECCCCcc------cceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCc
Confidence 666655544 77777643221 112333322 2345778999999999987764 5
Q ss_pred CeEEEEECCC------Cc-eeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCC----CeEEEEEcCCCCc-ee
Q 019405 184 VEVNVWDLDK------CE-KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND----HQVRLYDTSAQRR-PV 251 (341)
Q Consensus 184 ~~v~i~d~~~------~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~-~~ 251 (341)
..|++||+.+ +. ....+..+. ..+.. .| +++++.|+..+.. ..|.+||+.++.. ..
T Consensus 259 ~~l~~~d~~~~~~~~~~~~~~~~l~~~~---------~~~~~-~~--s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~ 326 (710)
T 2xdw_A 259 NRLWYCDLQQESNGITGILKWVKLIDNF---------EGEYD-YV--TNEGTVFTFKTNRHSPNYRLINIDFTDPEESKW 326 (710)
T ss_dssp CEEEEEEGGGSSSSSCSSCCCEEEECSS---------SSCEE-EE--EEETTEEEEEECTTCTTCEEEEEETTSCCGGGC
T ss_pred cEEEEEECcccccccCCccceEEeeCCC---------CcEEE-EE--eccCCEEEEEECCCCCCCEEEEEeCCCCCcccc
Confidence 6899999976 42 233333322 11222 35 5678777766553 3699999987541 13
Q ss_pred EEEEecCC--CeEEEEEcCCCceEEEEeCCCC--EEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEE-e---CCC
Q 019405 252 MSFDFRET--PIKAVAEEPDSFNIYIGNGSGD--LASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASC-G---LDS 323 (341)
Q Consensus 252 ~~~~~~~~--~v~~~~~~~~~~~l~~g~~dg~--i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~---~dg 323 (341)
..+..|.. .+..++|++++.++++...++. |++||+.+++.+..+..+ .+.+..+.++|++..++.. + ..+
T Consensus 327 ~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~ 405 (710)
T 2xdw_A 327 KVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLE-VGSVVGYSGQKKDTEIFYQFTSFLSPG 405 (710)
T ss_dssp EEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCC-SSEEEEEECCTTCSEEEEEEECSSCCC
T ss_pred eeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCC-CceEEEEecCCCCCEEEEEEeCCCCCC
Confidence 55555544 5778999988888888888874 677788788877788776 7889999999998765533 2 347
Q ss_pred cEEEEEcCCCc
Q 019405 324 YLRFWDIKTRQ 334 (341)
Q Consensus 324 ~v~iwd~~~~~ 334 (341)
.|++||+.+++
T Consensus 406 ~i~~~d~~tg~ 416 (710)
T 2xdw_A 406 IIYHCDLTKEE 416 (710)
T ss_dssp EEEEEETTSSS
T ss_pred EEEEEECCCCc
Confidence 89999999877
No 179
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.65 E-value=5.1e-14 Score=114.19 Aligned_cols=189 Identities=10% Similarity=0.133 Sum_probs=148.3
Q ss_pred cceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCC--ceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeec
Q 019405 123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASG--TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTA 200 (341)
Q Consensus 123 ~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~--~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~ 200 (341)
+..+++++.++.+.+|+.+.. . .+|...... .+.++.+.|+|++++ +.++.|..||. +++.++.+
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG---------~-~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~ 71 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTK---------E-IVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNI 71 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTT---------E-EEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEE
T ss_pred CcEEEeeCCCCEEEEEECCCC---------e-EEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEE
Confidence 348899999999999996433 3 246655443 688999999999888 34678999999 89999988
Q ss_pred CCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeC-CCeEEEEEcCCCCceeEEEEec------CCCeEEEEEcCCCceE
Q 019405 201 KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DHQVRLYDTSAQRRPVMSFDFR------ETPIKAVAEEPDSFNI 273 (341)
Q Consensus 201 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l 273 (341)
..+.. ..+.++.+ .++++++++.+. ++.|..+|. +++. +..+... ......+++.++|.++
T Consensus 72 ~~~~~--------~~~~~~~~--~~dG~~lv~~~~~~~~v~~vd~-~Gk~-l~~~~~~~~~~~~~~~~~~v~~~~~G~~l 139 (276)
T 3no2_A 72 AAPAG--------CEMQTARI--LPDGNALVAWCGHPSTILEVNM-KGEV-LSKTEFETGIERPHAQFRQINKNKKGNYL 139 (276)
T ss_dssp ECCTT--------CEEEEEEE--CTTSCEEEEEESTTEEEEEECT-TSCE-EEEEEECCSCSSGGGSCSCCEECTTSCEE
T ss_pred cCCCC--------ccccccEE--CCCCCEEEEecCCCCEEEEEeC-CCCE-EEEEeccCCCCcccccccCceECCCCCEE
Confidence 76421 23677788 789999999887 777887875 4443 5555421 1234566788999999
Q ss_pred EEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 274 YIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 274 ~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
++...++.|..||.. |+.+.++... ....++...++++++++++.++.|..+|..+|+.+.++
T Consensus 140 v~~~~~~~v~~~d~~-G~~~w~~~~~--~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~ 202 (276)
T 3no2_A 140 VPLFATSEVREIAPN-GQLLNSVKLS--GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRV 202 (276)
T ss_dssp EEETTTTEEEEECTT-SCEEEEEECS--SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEE
T ss_pred EEecCCCEEEEECCC-CCEEEEEECC--CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEe
Confidence 999999999999998 9999988764 45677888999999999988889999999999998776
No 180
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.65 E-value=6.9e-14 Score=129.53 Aligned_cols=270 Identities=9% Similarity=-0.055 Sum_probs=153.0
Q ss_pred eeeeecCCCCeEEEEEecCccCccceeeeccCCCCCce-----eEEEeccCCCCCceEEEEccC---------CeEEEee
Q 019405 16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNC-----VLAASIDDSQNDPLLAVARKN---------GLTDILN 81 (341)
Q Consensus 16 ~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~-----~~~~s~~~~~~~~~l~~~~~d---------g~i~iw~ 81 (341)
..+..+ ||.|++|++... +....+..|..... .++||+|++ +|+.++.+ +.+.+||
T Consensus 29 ~~~~~~-~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~Spdg~----~l~~~~~~~~~~r~~~~~~~~~~d 98 (740)
T 4a5s_A 29 EYLYKQ-ENNILVFNAEYG-----NSSVFLENSTFDEFGHSINDYSISPDGQ----FILLEYNYVKQWRHSYTASYDIYD 98 (740)
T ss_dssp EEEEEE-TTEEEEEETTTC-----CEEEEECTTTTTTCCSCCCEEEECTTSS----EEEEEEEEEECSSSCEEEEEEEEE
T ss_pred cEEEEc-CCcEEEEECCCC-----ceEEEEechhhhhhcccccceEECCCCC----EEEEEECCeeeEEEccceEEEEEE
Confidence 344444 889999998765 22233444443221 245565554 89988876 5667999
Q ss_pred CCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCce-EEEEEee
Q 019405 82 PLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCST-VKSWNVC 160 (341)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~-v~~~~~~ 160 (341)
+.+++... +.. +...+....|.+... .++.+ .++.+.+|++.......-..++. -.+++..
T Consensus 99 ~~~~~~~~-l~~--------~~~~~~~~~~SPdG~--------~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~ 160 (740)
T 4a5s_A 99 LNKRQLIT-EER--------IPNNTQWVTWSPVGH--------KLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGI 160 (740)
T ss_dssp TTTTEECC-SSC--------CCTTEEEEEECSSTT--------CEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESB
T ss_pred CCCCcEEE-ccc--------CCCcceeeEECCCCC--------EEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCc
Confidence 99887543 222 224455555544444 56555 57899999875433111001110 0011100
Q ss_pred c--------CCceEEEEecCCCCEEEEeeCCC------------------------------------eEEEEECCC---
Q 019405 161 A--------SGTIAFSKVDISEKFSLFGGKGV------------------------------------EVNVWDLDK--- 193 (341)
Q Consensus 161 ~--------~~~i~~~~~~~~~~~l~~~~~d~------------------------------------~v~i~d~~~--- 193 (341)
. -+....+.|+|||+.|+..+.|. .|++||+.+
T Consensus 161 ~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~ 240 (740)
T 4a5s_A 161 TDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSS 240 (740)
T ss_dssp CCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCS
T ss_pred ccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCC
Confidence 0 01223588999999999875322 477788777
Q ss_pred Cc--eeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeC----CCeEEEEEcCCCC----c-eeEEE--EecCCC
Q 019405 194 CE--KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN----DHQVRLYDTSAQR----R-PVMSF--DFRETP 260 (341)
Q Consensus 194 ~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~----~-~~~~~--~~~~~~ 260 (341)
++ ....+..+.. ...+...+..++| +|++++++.... +..|++||+.+++ + .+..+ ..|...
T Consensus 241 ~~~~~~~~l~~~~~---~~~~~~~~~~~~w--spdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~ 315 (740)
T 4a5s_A 241 VTNATSIQITAPAS---MLIGDHYLCDVTW--ATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGW 315 (740)
T ss_dssp SSCCCEEEECCCHH---HHTSCEEEEEEEE--EETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSC
T ss_pred CCcceEEEecCCcc---CCCCCeEEEEEEE--eCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCce
Confidence 52 1222221100 0013467899999 889987666543 3379999998876 1 11222 445555
Q ss_pred eE-----EEEEcCCCceEE-EEeC-C--CCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEE-EEeC
Q 019405 261 IK-----AVAEEPDSFNIY-IGNG-S--GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIA-SCGL 321 (341)
Q Consensus 261 v~-----~~~~~~~~~~l~-~g~~-d--g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-s~~~ 321 (341)
+. ...|+|||+.|+ ..+. + ..|++||+.+++......+ ...+..+.. ++++.|+ +++.
T Consensus 316 v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g--~~~v~~~~~-~d~~~i~f~~~~ 383 (740)
T 4a5s_A 316 VGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKG--TWEVIGIEA-LTSDYLYYISNE 383 (740)
T ss_dssp SSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCS--SSCEEEEEE-ECSSEEEEEESC
T ss_pred EccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccC--CEEEEEEEE-EeCCEEEEEEec
Confidence 54 788999998876 5553 3 3588899887665543333 345555542 3455444 4433
No 181
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.65 E-value=5.3e-13 Score=109.64 Aligned_cols=236 Identities=10% Similarity=-0.054 Sum_probs=153.6
Q ss_pred CceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEc
Q 019405 51 SNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT 130 (341)
Q Consensus 51 ~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 130 (341)
....++|++++. .+++++..++.|.+|+..++ ...+.. ....+.++.+-+... .+++..
T Consensus 29 ~~eg~~~d~~g~---~l~~~~~~~~~i~~~~~~~~--~~~~~~--------~~~~~~~l~~~~dg~--------l~v~~~ 87 (296)
T 3e5z_A 29 WTEGPVYVPARS---AVIFSDVRQNRTWAWSDDGQ--LSPEMH--------PSHHQNGHCLNKQGH--------LIACSH 87 (296)
T ss_dssp SEEEEEEEGGGT---EEEEEEGGGTEEEEEETTSC--EEEEES--------SCSSEEEEEECTTCC--------EEEEET
T ss_pred cccCCeEeCCCC---EEEEEeCCCCEEEEEECCCC--eEEEEC--------CCCCcceeeECCCCc--------EEEEec
Confidence 344566666553 16778888999999999876 444433 124455555543322 555555
Q ss_pred ccceeEEEEeeecccccccCCceEEEEEee----cCCceEEEEecCCCCEEEE----ee-------------CCCeEEEE
Q 019405 131 TKGKASMRSIEVTKVSAESSCSTVKSWNVC----ASGTIAFSKVDISEKFSLF----GG-------------KGVEVNVW 189 (341)
Q Consensus 131 ~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~----~~~~i~~~~~~~~~~~l~~----~~-------------~d~~v~i~ 189 (341)
.++.+.+|+.... .+..+... ....+..++++|+|+++++ ++ ..+.|..+
T Consensus 88 ~~~~i~~~d~~~g---------~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~ 158 (296)
T 3e5z_A 88 GLRRLERQREPGG---------EWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRL 158 (296)
T ss_dssp TTTEEEEECSTTC---------CEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEE
T ss_pred CCCeEEEEcCCCC---------cEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEE
Confidence 5688888886322 22222111 1234567899999998887 33 13466666
Q ss_pred ECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcC-CCCc--eeEEEEecCCCeEEEEE
Q 019405 190 DLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS-AQRR--PVMSFDFRETPIKAVAE 266 (341)
Q Consensus 190 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~--~~~~~~~~~~~v~~~~~ 266 (341)
+.. ++... +... ......++| +|+++.+++.+.++.|.+||+. .++. ....+..+...+..+++
T Consensus 159 ~~~-g~~~~-~~~~---------~~~~~gi~~--s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~ 225 (296)
T 3e5z_A 159 APD-GTLSA-PIRD---------RVKPNGLAF--LPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRV 225 (296)
T ss_dssp CTT-SCEEE-EECC---------CSSEEEEEE--CTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEE
T ss_pred CCC-CCEEE-eecC---------CCCCccEEE--CCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEE
Confidence 665 44322 2221 133678899 8999988777788999999987 3321 02223234455678999
Q ss_pred cCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEe-cCCCCEEEEEeCCCcEEEEEcCCCce
Q 019405 267 EPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIAR-HPTLPIIASCGLDSYLRFWDIKTRQL 335 (341)
Q Consensus 267 ~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~s~~~dg~v~iwd~~~~~~ 335 (341)
+++|+++++. ++.|.+||.. ++.+..+..+ .. +.+++| .|+++.|+.++.+ .+.-++.++++.
T Consensus 226 d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~-~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~ 289 (296)
T 3e5z_A 226 DAGGLIWASA--GDGVHVLTPD-GDELGRVLTP-QT-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGL 289 (296)
T ss_dssp BTTSCEEEEE--TTEEEEECTT-SCEEEEEECS-SC-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBC
T ss_pred CCCCCEEEEc--CCeEEEECCC-CCEEEEEECC-CC-ceeEEEECCCCCEEEEEcCC-eEEEEEcccccc
Confidence 9999866655 7889999986 7888888776 55 999999 5899888888776 456667766554
No 182
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.64 E-value=1.5e-13 Score=114.82 Aligned_cols=244 Identities=10% Similarity=-0.016 Sum_probs=154.3
Q ss_pred ceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcc
Q 019405 52 NCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT 131 (341)
Q Consensus 52 ~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (341)
+..++|+++.. .++....++.++.|. ++....+.. +.....++.+- +++. .++++..
T Consensus 8 ~~~~~~~~~~~----~~~~~~~~~~~~~~~---~~~~~~~~~--------~~~~~~~~~~~-~~g~-------l~~~~~~ 64 (333)
T 2dg1_A 8 LPTLFYSGKSN----SAVPIISESELQTIT---AEPWLEISK--------KGLQLEGLNFD-RQGQ-------LFLLDVF 64 (333)
T ss_dssp CCBCCSCGGGG----CSSCCCCGGGSCEEE---CEEEEEEES--------SCCCEEEEEEC-TTSC-------EEEEETT
T ss_pred cceeeecCCcc----ceeEEeecccCcccc---cceeEEEec--------cCccccCcEEC-CCCC-------EEEEECC
Confidence 44555665544 345456688888882 333333333 12334455553 3331 5567788
Q ss_pred cceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCC----CeEEEEECCCCceeeecCCCCCCc
Q 019405 132 KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKG----VEVNVWDLDKCEKIWTAKPPPKNS 207 (341)
Q Consensus 132 ~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----~~v~i~d~~~~~~~~~~~~~~~~~ 207 (341)
++.+.+|+.+. +.+..+.......+.+++++++++++++...+ +.|.+||.++++....+....
T Consensus 65 ~~~i~~~d~~~---------~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~--- 132 (333)
T 2dg1_A 65 EGNIFKINPET---------KEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLS--- 132 (333)
T ss_dssp TCEEEEECTTT---------CCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSS---
T ss_pred CCEEEEEeCCC---------CcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCc---
Confidence 88999998642 23333332345679999999999988877666 689999998766543222111
Q ss_pred cCccCCeeeeEEEEEecCCCCEEEEEeC------CCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEE-EeCCC
Q 019405 208 LGIFTPTWFTSAAFLSIDDHRKFVAGTN------DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYI-GNGSG 280 (341)
Q Consensus 208 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-g~~dg 280 (341)
....+..+++ +|+++++++... .+.|..+|..+++ +..+..+...+..++|+|+++.|+. ...++
T Consensus 133 ----~~~~~~~i~~--d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~ 204 (333)
T 2dg1_A 133 ----TAYCIDDMVF--DSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT--VTPIIQNISVANGIALSTDEKVLWVTETTAN 204 (333)
T ss_dssp ----SCCCEEEEEE--CTTSCEEEEECCCBTTBCCEEEEEECTTSCC--EEEEEEEESSEEEEEECTTSSEEEEEEGGGT
T ss_pred ----cCCcccceEE--CCCCCEEEEeccccccCCCceEEEEeCCCCE--EEEeecCCCcccceEECCCCCEEEEEeCCCC
Confidence 1245888999 888987776653 2556666655433 3333333346789999999986654 45678
Q ss_pred CEEEEECCC-CeEEeEE------eccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 281 DLASVDIRT-GKLLGCF------IGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 281 ~i~iwd~~~-~~~~~~~------~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
.|++||+.+ ++.+..+ .......+..++++++|+++++...++.|.+||. +++.+..+
T Consensus 205 ~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~ 269 (333)
T 2dg1_A 205 RLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQI 269 (333)
T ss_dssp EEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEE
T ss_pred eEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEE
Confidence 999999963 3322211 1110136788999999998888888899999998 46655543
No 183
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.63 E-value=1.6e-14 Score=123.72 Aligned_cols=237 Identities=9% Similarity=-0.008 Sum_probs=144.7
Q ss_pred ceeEEEeccCCCCCceEEEEccC---CeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEE
Q 019405 52 NCVLAASIDDSQNDPLLAVARKN---GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLT 128 (341)
Q Consensus 52 ~~~~~~s~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 128 (341)
+..++||+++. +|+..... ..|.+||+.+++....... .........|.+++. .|+.
T Consensus 38 ~~~~~~SpdG~----~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~---------~~~~~~~~~~spdg~-------~l~~ 97 (396)
T 3c5m_A 38 FYQKCFTQDGK----KLLFAGDFDGNRNYYLLNLETQQAVQLTEG---------KGDNTFGGFISTDER-------AFFY 97 (396)
T ss_dssp TTSCCBCTTSC----EEEEEECTTSSCEEEEEETTTTEEEECCCS---------SCBCTTTCEECTTSS-------EEEE
T ss_pred eecCcCCCCCC----EEEEEEecCCCceEEEEECCCCcEEEeecC---------CCCccccceECCCCC-------EEEE
Confidence 44555665554 77776432 4788889987764332221 112222123344332 7777
Q ss_pred EcccceeEEEEeeecccccccCCceEEEEEeecCCceEE-------------------EEecCCCCEEEEe-----eCCC
Q 019405 129 CTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAF-------------------SKVDISEKFSLFG-----GKGV 184 (341)
Q Consensus 129 ~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~-------------------~~~~~~~~~l~~~-----~~d~ 184 (341)
.+.++.+.+|++.... ...+.... ...... ..++|+++.++.. ..+.
T Consensus 98 ~~~~~~l~~~d~~~~~--------~~~~~~~~-~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~ 168 (396)
T 3c5m_A 98 VKNELNLMKVDLETLE--------EQVIYTVD-EEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTC 168 (396)
T ss_dssp EETTTEEEEEETTTCC--------EEEEEECC-TTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCE
T ss_pred EEcCCcEEEEECCCCC--------cEEEEecc-cccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcc
Confidence 7778888888875332 11222211 111111 3467788776654 3566
Q ss_pred eEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecC-CCCEEEEEeCC------CeEEEEEcCCCCceeEEEEec
Q 019405 185 EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTND------HQVRLYDTSAQRRPVMSFDFR 257 (341)
Q Consensus 185 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~ 257 (341)
.|.+||+.+++....... ...+..+.| +| ++..|+..+.+ ..|.+||+...+ ...+..+
T Consensus 169 ~l~~~d~~~g~~~~~~~~----------~~~~~~~~~--sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~--~~~l~~~ 234 (396)
T 3c5m_A 169 RLIKVDIETGELEVIHQD----------TAWLGHPIY--RPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN--VRKIKEH 234 (396)
T ss_dssp EEEEEETTTCCEEEEEEE----------SSCEEEEEE--ETTEEEEEEEEECSCSSSCSCCCEEEETTSCC--CEESSCC
T ss_pred eEEEEECCCCcEEeeccC----------CcccccceE--CCCCCCEEEEEecCCCCCCCceEEEEECCCCc--eeEeecc
Confidence 899999988765543321 134778889 78 77777766543 368888887543 2333223
Q ss_pred --CCCeEEEEEcCCCceEEEEeCC-----CCEEEEECCCCeEEeEEeccccCceeEEEecC-CCCEEEEEe---------
Q 019405 258 --ETPIKAVAEEPDSFNIYIGNGS-----GDLASVDIRTGKLLGCFIGKCSGSIRSIARHP-TLPIIASCG--------- 320 (341)
Q Consensus 258 --~~~v~~~~~~~~~~~l~~g~~d-----g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~--------- 320 (341)
...+..++|+|+|+.|+..+.+ +.|++||+.+++........ ... +.|+| +|++++.++
T Consensus 235 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~---~~~-~~~s~~dg~~l~~~~~~~p~~~~~ 310 (396)
T 3c5m_A 235 AEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP---PCS-HLMSNFDGSLMVGDGCDAPVDVAD 310 (396)
T ss_dssp CTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC---SEE-EEEECSSSSEEEEEECCC------
T ss_pred CCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC---CCC-CCccCCCCceEEEecCCcceeecc
Confidence 2247789999999987776543 34999999988654433221 123 89999 999888754
Q ss_pred -------CCCcEEEEEcCCCce
Q 019405 321 -------LDSYLRFWDIKTRQL 335 (341)
Q Consensus 321 -------~dg~v~iwd~~~~~~ 335 (341)
.+..|++||+.+++.
T Consensus 311 ~~~~~~~~~~~i~~~d~~~~~~ 332 (396)
T 3c5m_A 311 ADSYNIENDPFLYVLNTKAKSA 332 (396)
T ss_dssp ----CCCCCCEEEEEETTTTBC
T ss_pred ccccccCCCCcEEEEecccCce
Confidence 347899999988764
No 184
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.63 E-value=2.2e-13 Score=113.69 Aligned_cols=173 Identities=9% Similarity=-0.027 Sum_probs=121.5
Q ss_pred CceEEEEecCCCCEEEEeeCCCeEEEEECCCCc-eeeecCCCCCCccCccCCeeeeEEEEEecC-CCCEEEEEe-CCCeE
Q 019405 163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE-KIWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGT-NDHQV 239 (341)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~-~d~~i 239 (341)
.....++++++++++++...++.|++||..... .+..+...........+......+++ +| ++.++++.+ .++.|
T Consensus 91 ~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~--~~~~g~lyv~d~~~~~~I 168 (329)
T 3fvz_A 91 YLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAV--EPSTGAVFVSDGYCNSRI 168 (329)
T ss_dssp SSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEE--CTTTCCEEEEECSSCCEE
T ss_pred CCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEE--eCCCCeEEEEeCCCCCeE
Confidence 357889999999988888889999999986442 34433221100000112245788999 88 788888876 68999
Q ss_pred EEEEcCCCCceeEEEEecC----------CCeEEEEEcCC-CceEEEEeCCCCEEEEECCCCeEEeEEecc-ccCceeEE
Q 019405 240 RLYDTSAQRRPVMSFDFRE----------TPIKAVAEEPD-SFNIYIGNGSGDLASVDIRTGKLLGCFIGK-CSGSIRSI 307 (341)
Q Consensus 240 ~iwd~~~~~~~~~~~~~~~----------~~v~~~~~~~~-~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~-~~~~i~~~ 307 (341)
++||.. ++. +..+.... .....++++|+ +.++++...++.|++||..+++.+..+... +...+..+
T Consensus 169 ~~~~~~-g~~-~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~ 246 (329)
T 3fvz_A 169 VQFSPS-GKF-VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAI 246 (329)
T ss_dssp EEECTT-SCE-EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEE
T ss_pred EEEcCC-CCE-EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCccee
Confidence 999944 343 45443222 23789999998 777777778899999999989988887532 25678899
Q ss_pred EecC------CCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 308 ARHP------TLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 308 ~~~~------~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
+|+| ++..+++...+..|++||..+++.+..+
T Consensus 247 ~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~ 284 (329)
T 3fvz_A 247 SYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVF 284 (329)
T ss_dssp EEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEE
T ss_pred eecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEE
Confidence 9999 3333333344558999999999888764
No 185
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.62 E-value=4.8e-13 Score=111.55 Aligned_cols=232 Identities=9% Similarity=-0.014 Sum_probs=154.7
Q ss_pred cCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCc
Q 019405 73 KNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCS 152 (341)
Q Consensus 73 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~ 152 (341)
.++.|.++|.++++....+...... .+..+....+.+ .... .+++...++.+.++|....+
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~--~~lg~~~~~i~~-~~~~--------lyv~~~~~~~v~viD~~t~~-------- 75 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANG--FKLGDVAQSMVI-RDGI--------GWIVVNNSHVIFAIDINTFK-------- 75 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHS--SCCBSCEEEEEE-ETTE--------EEEEEGGGTEEEEEETTTCC--------
T ss_pred CCceEEEEECCCCEEhhhhHhhhcC--cccCccceEEEE-ECCE--------EEEEEcCCCEEEEEECcccE--------
Confidence 4899999999998776554210000 011123334443 3333 66777778999999975433
Q ss_pred eEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEE
Q 019405 153 TVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA 232 (341)
Q Consensus 153 ~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 232 (341)
.+..+ ........++++++++..++...++.|.+||..+++....+...... ........+++ . ++.++++
T Consensus 76 ~~~~i--~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~----~~~~~p~~i~~--~-~~~lyv~ 146 (328)
T 3dsm_A 76 EVGRI--TGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMD----MESGSTEQMVQ--Y-GKYVYVN 146 (328)
T ss_dssp EEEEE--ECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCC----TTTCBCCCEEE--E-TTEEEEE
T ss_pred EEEEc--CCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCcc----ccCCCcceEEE--E-CCEEEEE
Confidence 33333 23466788999888855444447899999999998877665543210 00012445666 2 3444444
Q ss_pred Ee-CCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCC----------CCEEEEECCCCeEEeEEecccc
Q 019405 233 GT-NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS----------GDLASVDIRTGKLLGCFIGKCS 301 (341)
Q Consensus 233 ~~-~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d----------g~i~iwd~~~~~~~~~~~~~~~ 301 (341)
.. .++.|.++|..+++. +..+... .....++++|+|++++++..+ +.|.++|..+++....+.....
T Consensus 147 ~~~~~~~v~viD~~t~~~-~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g 224 (328)
T 3dsm_A 147 CWSYQNRILKIDTETDKV-VDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLG 224 (328)
T ss_dssp ECTTCCEEEEEETTTTEE-EEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTT
T ss_pred cCCCCCEEEEEECCCCeE-EEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCC
Confidence 43 488999999998664 5555543 345688999999877776654 7899999999998877764313
Q ss_pred CceeEEEecCCCCEEEEEeCCCcEEEEEcCCCcee
Q 019405 302 GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLL 336 (341)
Q Consensus 302 ~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 336 (341)
.....++|+|+++.|..+.. .|.+||..+++..
T Consensus 225 ~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~ 257 (328)
T 3dsm_A 225 DWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVP 257 (328)
T ss_dssp CCCEEEEECTTSCEEEEESS--SEEEEETTCSSCC
T ss_pred CCceeEEEecCCCEEEEEcc--EEEEEECCCCcee
Confidence 46889999999998877755 8999999988754
No 186
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.61 E-value=1.7e-11 Score=100.52 Aligned_cols=239 Identities=6% Similarity=0.014 Sum_probs=158.0
Q ss_pred CCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeE
Q 019405 48 PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL 127 (341)
Q Consensus 48 ~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 127 (341)
+...+..+++.+++. ++++...++.|.+||.. ++. ..+... .....+.++.+-+... .++
T Consensus 13 ~~~~~~~i~~d~~g~----l~v~~~~~~~v~~~d~~-~~~-~~~~~~------~~~~~~~~i~~~~~g~--------l~v 72 (299)
T 2z2n_A 13 QDTGPYGITVSDKGK----VWITQHKANMISCINLD-GKI-TEYPLP------TPDAKVMCLTISSDGE--------VWF 72 (299)
T ss_dssp SSCCEEEEEECTTSC----EEEEETTTTEEEEECTT-CCE-EEEECS------STTCCEEEEEECTTSC--------EEE
T ss_pred cCCCccceEECCCCC----EEEEecCCCcEEEEcCC-CCe-EEecCC------cccCceeeEEECCCCC--------EEE
Confidence 345566777766555 55555557899999987 543 222211 1124455555433222 555
Q ss_pred EEcccceeEEEEeeecccccccCCceEEEEEee-cCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeee-cCCCCC
Q 019405 128 TCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC-ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT-AKPPPK 205 (341)
Q Consensus 128 ~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~-~~~~~~ 205 (341)
+...++.+..|+.. +.+..+... ....+..++++++++++++...++.|..||. +++.... ....
T Consensus 73 ~~~~~~~i~~~~~~----------g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~-- 139 (299)
T 2z2n_A 73 TENAANKIGRITKK----------GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNK-- 139 (299)
T ss_dssp EETTTTEEEEECTT----------SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSST--
T ss_pred eCCCCCeEEEECCC----------CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCC--
Confidence 55557778877642 234444432 3456889999999988887777889999998 5543322 1111
Q ss_pred CccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEE--EecCCCeEEEEEcCCCceEEEEeCCCCEE
Q 019405 206 NSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF--DFRETPIKAVAEEPDSFNIYIGNGSGDLA 283 (341)
Q Consensus 206 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~g~~dg~i~ 283 (341)
...+..+++ .+++.++++...++.|..||. +++ +..+ ..+...+..+++++++.++++...++.|.
T Consensus 140 -------~~~~~~i~~--~~~g~l~v~~~~~~~i~~~~~-~g~--~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~ 207 (299)
T 2z2n_A 140 -------GSYPSFITL--GSDNALWFTENQNNAIGRITE-SGD--ITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIG 207 (299)
T ss_dssp -------TCCEEEEEE--CTTSCEEEEETTTTEEEEECT-TCC--EEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred -------CCCCceEEE--cCCCCEEEEeCCCCEEEEEcC-CCc--EEEeeCCCCCCcceeEEECCCCCEEEEccCCceEE
Confidence 134788888 888888777777789999998 544 2222 22345688999999998777766788999
Q ss_pred EEECCCCeEEeE-EeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCc
Q 019405 284 SVDIRTGKLLGC-FIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ 334 (341)
Q Consensus 284 iwd~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 334 (341)
+||. +++.... ...+ ...+.+++++++|.++++...++.|..||. +++
T Consensus 208 ~~~~-~g~~~~~~~~~~-~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~ 256 (299)
T 2z2n_A 208 RITT-SGEITEFKIPTP-NARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI 256 (299)
T ss_dssp EECT-TCCEEEEECSST-TCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE
T ss_pred EECC-CCcEEEEECCCC-CCCceeEEECCCCCEEEeccCCceEEEECC-CCc
Confidence 9999 6664332 2222 467899999999997777667889999998 454
No 187
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.61 E-value=2.4e-13 Score=124.99 Aligned_cols=245 Identities=9% Similarity=-0.078 Sum_probs=149.5
Q ss_pred CceeEEEeccCCCCCceEEE-----EccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccce
Q 019405 51 SNCVLAASIDDSQNDPLLAV-----ARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT 125 (341)
Q Consensus 51 ~~~~~~~s~~~~~~~~~l~~-----~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (341)
.+..++||+|++ +||. |+.+..|++||+.+++.+..-.. .......+.|.+... .
T Consensus 122 ~~~~~~~SPDG~----~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~--------~~~~~~~~~wspDg~--------~ 181 (695)
T 2bkl_A 122 SLGTWAVSWDGK----KVAFAQKPNAADEAVLHVIDVDSGEWSKVDVI--------EGGKYATPKWTPDSK--------G 181 (695)
T ss_dssp EEEEEEECTTSS----EEEEEEEETTCSCCEEEEEETTTCCBCSSCCB--------SCCTTCCCEECTTSS--------E
T ss_pred EEEEEEECCCCC----EEEEEECCCCCceEEEEEEECCCCCCcCCccc--------CcccccceEEecCCC--------E
Confidence 455556665554 7874 34456899999999876511111 001113345544444 6
Q ss_pred eEEEcccce-------------eEEEEeeecccccccCCceEEEEEee-cCCceEEEEecCCCCEEEEeeCCC----eEE
Q 019405 126 LLTCTTKGK-------------ASMRSIEVTKVSAESSCSTVKSWNVC-ASGTIAFSKVDISEKFSLFGGKGV----EVN 187 (341)
Q Consensus 126 l~~~~~~g~-------------~~i~~~~~~~~~~~~~~~~v~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~----~v~ 187 (341)
|+.++.+.. +.+|++..... ....++... +...+..+.++|||++|+..+.++ .|+
T Consensus 182 l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~------~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~ 255 (695)
T 2bkl_A 182 FYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPS------KDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVY 255 (695)
T ss_dssp EEEEECCCCTTSCGGGGGGGCEEEEEETTSCGG------GCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEE
T ss_pred EEEEEecCCCCCccccCCCCCEEEEEECCCCch------hceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEE
Confidence 666666544 78887754321 112333322 234678999999999998877665 677
Q ss_pred EEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEe---CCCeEEEEEcCCCCc-eeEEEEec--CCCe
Q 019405 188 VWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT---NDHQVRLYDTSAQRR-PVMSFDFR--ETPI 261 (341)
Q Consensus 188 i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~-~~~~~~~~--~~~v 261 (341)
+++..+++.. .+..+. ..+....+ + ++.+++.+. .++.|.+||+.++.. ....+..+ ...+
T Consensus 256 ~~~~~~~~~~-~l~~~~---------~~~~~~~~--~-~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l 322 (695)
T 2bkl_A 256 WKRPGEKDFR-LLVKGV---------GAKYEVHA--W-KDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASL 322 (695)
T ss_dssp EECTTCSSCE-EEEECS---------SCCEEEEE--E-TTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEE
T ss_pred EEcCCCCceE-EeecCC---------CceEEEEe--c-CCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeE
Confidence 7776554432 222221 12334445 3 444444443 258899999977542 12344433 3457
Q ss_pred EEEEEcCCCceEEEEeCCCCEEEEECC-CCeEEeEEeccccCceeEEEecCCCCEEEEE----eCCCcEEEEEcCCCce
Q 019405 262 KAVAEEPDSFNIYIGNGSGDLASVDIR-TGKLLGCFIGKCSGSIRSIARHPTLPIIASC----GLDSYLRFWDIKTRQL 335 (341)
Q Consensus 262 ~~~~~~~~~~~l~~g~~dg~i~iwd~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~----~~dg~v~iwd~~~~~~ 335 (341)
..++|+ ++.++++...|+..+||.+. +++.+..+..+..+.+..+.++|++..++.. ...+.|++||+.+++.
T Consensus 323 ~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 323 LSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 888888 67788888889888877554 4555666654435678889999999866622 3457899999988763
No 188
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.59 E-value=1.7e-12 Score=106.03 Aligned_cols=191 Identities=11% Similarity=0.053 Sum_probs=135.6
Q ss_pred eeEEEcccceeEEEEeeecccccccCCceEEEEEee-----cCCceEEEEe-cCCCCEEEEeeC-CCeEEEEECCCCcee
Q 019405 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC-----ASGTIAFSKV-DISEKFSLFGGK-GVEVNVWDLDKCEKI 197 (341)
Q Consensus 125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~-----~~~~i~~~~~-~~~~~~l~~~~~-d~~v~i~d~~~~~~~ 197 (341)
.+++...++.+.+|+.+. ..+..+... +...+..+++ .++++++++... ++.|.+|| .+++.+
T Consensus 43 l~v~~~~~~~i~~~d~~g---------~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~ 112 (286)
T 1q7f_A 43 IIVADTNNHRIQIFDKEG---------RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFV 112 (286)
T ss_dssp EEEEEGGGTEEEEECTTS---------CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEE
T ss_pred EEEEECCCCEEEEECCCC---------cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEE
Confidence 666767889999998541 123333211 1235788899 467776666543 78999999 566666
Q ss_pred eecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEE--ecCCCeEEEEEcCCCceEEE
Q 019405 198 WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD--FRETPIKAVAEEPDSFNIYI 275 (341)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~ 275 (341)
..+.... ...+..+++ .++++++++...++.|.+||... +. +..+. .+...+..++++|+|+++++
T Consensus 113 ~~~~~~~--------~~~~~~i~~--~~~g~l~v~~~~~~~i~~~~~~g-~~-~~~~~~~~~~~~p~~i~~~~~g~l~v~ 180 (286)
T 1q7f_A 113 RKFGATI--------LQHPRGVTV--DNKGRIIVVECKVMRVIIFDQNG-NV-LHKFGCSKHLEFPNGVVVNDKQEIFIS 180 (286)
T ss_dssp EEECTTT--------CSCEEEEEE--CTTSCEEEEETTTTEEEEECTTS-CE-EEEEECTTTCSSEEEEEECSSSEEEEE
T ss_pred EEecCcc--------CCCceEEEE--eCCCCEEEEECCCCEEEEEcCCC-CE-EEEeCCCCccCCcEEEEECCCCCEEEE
Confidence 6554321 134788999 88998888877889999999653 32 44443 23456889999999998888
Q ss_pred EeCCCCEEEEECCCCeEEeEEecc-ccCceeEEEecCCCCEEEEEeCCC-cEEEEEcCCCceeeee
Q 019405 276 GNGSGDLASVDIRTGKLLGCFIGK-CSGSIRSIARHPTLPIIASCGLDS-YLRFWDIKTRQLLSAV 339 (341)
Q Consensus 276 g~~dg~i~iwd~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~s~~~dg-~v~iwd~~~~~~~~~~ 339 (341)
...++.|++||. +++.+..+..+ +...+..++++++|+++++...++ .|.+||. +++.+..+
T Consensus 181 ~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~ 244 (286)
T 1q7f_A 181 DNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISAL 244 (286)
T ss_dssp EGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEE
T ss_pred ECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEE
Confidence 778899999997 45666666432 125788999999999888888776 9999995 46665544
No 189
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.59 E-value=4.3e-11 Score=98.09 Aligned_cols=237 Identities=8% Similarity=0.007 Sum_probs=150.8
Q ss_pred CCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEE
Q 019405 49 HSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLT 128 (341)
Q Consensus 49 ~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 128 (341)
...+..+++.+++. ++++...++.|..|+.. ++. ..+... .....+..+.+.+... .+++
T Consensus 56 ~~~~~~i~~~~~g~----l~v~~~~~~~i~~~~~~-g~~-~~~~~~------~~~~~~~~i~~~~~g~--------l~v~ 115 (299)
T 2z2n_A 56 DAKVMCLTISSDGE----VWFTENAANKIGRITKK-GII-KEYTLP------NPDSAPYGITEGPNGD--------IWFT 115 (299)
T ss_dssp TCCEEEEEECTTSC----EEEEETTTTEEEEECTT-SCE-EEEECS------STTCCEEEEEECTTSC--------EEEE
T ss_pred cCceeeEEECCCCC----EEEeCCCCCeEEEECCC-CcE-EEEeCC------CcCCCceeeEECCCCC--------EEEE
Confidence 34555666665444 66666668899999985 332 222210 1123455555433222 5555
Q ss_pred EcccceeEEEEeeecccccccCCceEEEEEee-cCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeee-cCCCCCC
Q 019405 129 CTTKGKASMRSIEVTKVSAESSCSTVKSWNVC-ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT-AKPPPKN 206 (341)
Q Consensus 129 ~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~-~~~~~~~ 206 (341)
...++.+.+++.. +.+..+... ....+..+++++++++.++...++.|..||. +++.... ....
T Consensus 116 ~~~~~~i~~~d~~----------g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~--- 181 (299)
T 2z2n_A 116 EMNGNRIGRITDD----------GKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTP--- 181 (299)
T ss_dssp ETTTTEEEEECTT----------CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSST---
T ss_pred ecCCceEEEECCC----------CCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCC---
Confidence 5567788877641 123333222 2356889999999988887777789999998 6654432 2211
Q ss_pred ccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEE--ecCCCeEEEEEcCCCceEEEEeCCCCEEE
Q 019405 207 SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD--FRETPIKAVAEEPDSFNIYIGNGSGDLAS 284 (341)
Q Consensus 207 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~g~~dg~i~i 284 (341)
...+..+++ .+++.+.++...++.|.+||. +++ +..+. .+...+.+++++++|+++++...++.|..
T Consensus 182 ------~~~~~~i~~--~~~g~l~v~~~~~~~i~~~~~-~g~--~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~ 250 (299)
T 2z2n_A 182 ------ASGPVGITK--GNDDALWFVEIIGNKIGRITT-SGE--ITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGR 250 (299)
T ss_dssp ------TCCEEEEEE--CTTSSEEEEETTTTEEEEECT-TCC--EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEE
T ss_pred ------CCcceeEEE--CCCCCEEEEccCCceEEEECC-CCc--EEEEECCCCCCCceeEEECCCCCEEEeccCCceEEE
Confidence 134778888 788887777667889999998 544 22332 23457889999999986666667889999
Q ss_pred EECCCCeEEeE-EeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCc
Q 019405 285 VDIRTGKLLGC-FIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ 334 (341)
Q Consensus 285 wd~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 334 (341)
||. +++.... +..+ ...+.++++ +++.++++.+ .+.|..++.++++
T Consensus 251 ~d~-~g~~~~~~~~~~-~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 251 LTS-NNIIEEYPIQIK-SAEPHGICF-DGETIWFAME-CDKIGKLTLIKDN 297 (299)
T ss_dssp EET-TTEEEEEECSSS-SCCEEEEEE-CSSCEEEEET-TTEEEEEEEC---
T ss_pred ECC-CCceEEEeCCCC-CCccceEEe-cCCCEEEEec-CCcEEEEEcCccc
Confidence 998 4553322 2233 467899999 8888777665 5678888887654
No 190
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.58 E-value=6.4e-12 Score=105.19 Aligned_cols=284 Identities=15% Similarity=0.077 Sum_probs=173.1
Q ss_pred ceeeeecC-----CCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEc----------cCCeEEE
Q 019405 15 LRALTFDS-----LGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR----------KNGLTDI 79 (341)
Q Consensus 15 ~~~~~~~~-----~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~----------~dg~i~i 79 (341)
-+++..+. ++.+.+++.... +++.++.....+ . +++++|++ +|+++. .++.|.+
T Consensus 45 ~~vyV~~~~~~~~~~~V~ViD~~t~-----~v~~~I~vG~~P-~-va~spDG~----~lyVan~~~~r~~~G~~~~~Vsv 113 (386)
T 3sjl_D 45 RRVYVNDPAHFAAVTQQFVIDGEAG-----RVIGMIDGGFLP-N-PVVADDGS----FIAHASTVFSRIARGERTDYVEV 113 (386)
T ss_dssp TEEEEEECGGGCSSEEEEEEETTTT-----EEEEEEEECSSC-E-EEECTTSS----CEEEEEEEEEETTEEEEEEEEEE
T ss_pred CEEEEEcCcccCCCCEEEEEECCCC-----eEEEEEECCCCC-c-EEECCCCC----EEEEEcccccccccCCCCCEEEE
Confidence 44555544 577888887665 666666443344 3 88888777 676654 3678999
Q ss_pred eeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEc--ccceeEEEEeeecccccccCCceEEEE
Q 019405 80 LNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT--TKGKASMRSIEVTKVSAESSCSTVKSW 157 (341)
Q Consensus 80 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~g~~~i~~~~~~~~~~~~~~~~v~~~ 157 (341)
||..+++.+.++........ ........+.+.+..+ .++++. .++.+.++|+...+ .+..+
T Consensus 114 iD~~t~~v~~~I~v~~g~r~-~~g~~P~~~a~spDGk--------~lyVan~~~~~~VsVID~~t~~--------vv~tI 176 (386)
T 3sjl_D 114 FDPVTLLPTADIELPDAPRF-LVGTYPWMTSLTPDGK--------TLLFYQFSPAPAVGVVDLEGKA--------FKRML 176 (386)
T ss_dssp ECTTTCCEEEEEEETTCCCC-CBSCCGGGEEECTTSS--------EEEEEECSSSCEEEEEETTTTE--------EEEEE
T ss_pred EECCCCeEEEEEECCCcccc-ccCCCCceEEEcCCCC--------EEEEEEcCCCCeEEEEECCCCc--------EEEEE
Confidence 99999998888764110000 0011222344444333 555554 26788888876444 33333
Q ss_pred EeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCC-CceeeecCCCCCCccCccCCeee-eEEEEEecCCCCEEEEEeC
Q 019405 158 NVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDK-CEKIWTAKPPPKNSLGIFTPTWF-TSAAFLSIDDHRKFVAGTN 235 (341)
Q Consensus 158 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~l~~~~~ 235 (341)
... +. ...+....+.+++.+.||.+.+.++.+ ++........ +.. ....+ ....|. .+++++++ .+.
T Consensus 177 ~v~--g~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~----~~~-~~~~~~~~~~~~-~~dG~~~~-vs~ 245 (386)
T 3sjl_D 177 DVP--DC--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEV----FHP-EDEFLINHPAYS-QKAGRLVW-PTY 245 (386)
T ss_dssp ECC--SE--EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCC----CSC-TTSCBCSCCEEE-TTTTEEEE-EBT
T ss_pred ECC--Cc--ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecce----ecc-ccccccccceeE-cCCCcEEE-EeC
Confidence 331 11 112222345666777888888888875 4432211110 000 00111 123552 35675544 556
Q ss_pred CCeEEEEEcCCCCc-eeEEEE----------ecCCCeEEEEEcCCCceEEEEeC----------CCCEEEEECCCCeEEe
Q 019405 236 DHQVRLYDTSAQRR-PVMSFD----------FRETPIKAVAEEPDSFNIYIGNG----------SGDLASVDIRTGKLLG 294 (341)
Q Consensus 236 d~~i~iwd~~~~~~-~~~~~~----------~~~~~v~~~~~~~~~~~l~~g~~----------dg~i~iwd~~~~~~~~ 294 (341)
+|.|++.|+.+... .+..+. ........++++|+++.+++... .+.|.++|+.+++.+.
T Consensus 246 ~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~ 325 (386)
T 3sjl_D 246 TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLA 325 (386)
T ss_dssp TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEE
T ss_pred CCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEE
Confidence 89999999976432 122222 01123345778999988887653 2569999999999999
Q ss_pred EEeccccCceeEEEecCCCC-EEEEE-eCCCcEEEEEcCCCceeeee
Q 019405 295 CFIGKCSGSIRSIARHPTLP-IIASC-GLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 295 ~~~~~~~~~i~~~~~~~~~~-~l~s~-~~dg~v~iwd~~~~~~~~~~ 339 (341)
.+... ..+++|++++|++ +|+++ ..++.|.++|..+++.+.++
T Consensus 326 ~i~vg--~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i 370 (386)
T 3sjl_D 326 KFEMG--HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSV 370 (386)
T ss_dssp EEEEE--EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEECC--CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEe
Confidence 98864 4789999999996 66664 45899999999999998876
No 191
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.57 E-value=2e-11 Score=108.58 Aligned_cols=243 Identities=13% Similarity=0.103 Sum_probs=162.4
Q ss_pred ceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEee--ec
Q 019405 66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE--VT 143 (341)
Q Consensus 66 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~--~~ 143 (341)
.++++...++.|.++|..+++.+.++... .....+.+.+... .+++++.++.+.+||+. ..
T Consensus 168 ~~~V~~~~~~~V~viD~~t~~v~~~i~~g---------~~p~~v~~SpDGr--------~lyv~~~dg~V~viD~~~~t~ 230 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTYEIKTVLDTG---------YAVHISRLSASGR--------YLFVIGRDGKVNMIDLWMKEP 230 (567)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEEECS---------SCEEEEEECTTSC--------EEEEEETTSEEEEEETTSSSC
T ss_pred eEEEEeCCCCeEEEEECCCCeEEEEEeCC---------CCccceEECCCCC--------EEEEEcCCCeEEEEECCCCCC
Confidence 46777788999999999999988887652 2334555444333 77888889999999973 21
Q ss_pred ccccccCCceEEEEEeecCCceEEEEec----CCCCEEEEeeC-CCeEEEEECCCCceeeecCCCCCCcc-CccCC-eee
Q 019405 144 KVSAESSCSTVKSWNVCASGTIAFSKVD----ISEKFSLFGGK-GVEVNVWDLDKCEKIWTAKPPPKNSL-GIFTP-TWF 216 (341)
Q Consensus 144 ~~~~~~~~~~v~~~~~~~~~~i~~~~~~----~~~~~l~~~~~-d~~v~i~d~~~~~~~~~~~~~~~~~~-~~~~~-~~v 216 (341)
. .+. .+..+.....++++ |+|++++++.. +++|.++|..+.+.+..+.......- ...|+ ..+
T Consensus 231 ~--------~v~--~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rv 300 (567)
T 1qks_A 231 T--------TVA--EIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRV 300 (567)
T ss_dssp C--------EEE--EEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCE
T ss_pred c--------EeE--EEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCce
Confidence 1 222 33334566789999 69998887654 58999999999988877654321000 00011 146
Q ss_pred eEEEEEecCCCC-EEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEe-CCCCEEEEECCCCeEEe
Q 019405 217 TSAAFLSIDDHR-KFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLG 294 (341)
Q Consensus 217 ~~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~ 294 (341)
..+.. ++++. +++....+|.|.++|....+.+.............+.|+|++++++++. .++.|.++|+.+++++.
T Consensus 301 a~i~~--s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~ 378 (567)
T 1qks_A 301 AAILA--SHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVA 378 (567)
T ss_dssp EEEEE--CSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred EEEEE--cCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEE
Confidence 66766 55544 4455566799999998875432222222345677899999999887765 57899999999999887
Q ss_pred EEec-c---ccCceeEEE-ecCCCC-EEEEEe-CCCcEEEEEcCC-------Cceeeee
Q 019405 295 CFIG-K---CSGSIRSIA-RHPTLP-IIASCG-LDSYLRFWDIKT-------RQLLSAV 339 (341)
Q Consensus 295 ~~~~-~---~~~~i~~~~-~~~~~~-~l~s~~-~dg~v~iwd~~~-------~~~~~~~ 339 (341)
.+.. . |.+ ..+. ++|++. .++++. .++.|.++|..+ .+.++++
T Consensus 379 ~i~vgg~~Phpg--~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i 435 (567)
T 1qks_A 379 IEDTGGQTPHPG--RGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSF 435 (567)
T ss_dssp EEECSSSSBCCT--TCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEE
T ss_pred EEeccCcCCCCc--cceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEE
Confidence 7764 1 121 2222 588744 555554 468999999988 4555554
No 192
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.57 E-value=7.7e-13 Score=111.18 Aligned_cols=205 Identities=13% Similarity=0.086 Sum_probs=129.7
Q ss_pred CCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEccc---ce--eEEEEeeecccccc
Q 019405 74 NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK---GK--ASMRSIEVTKVSAE 148 (341)
Q Consensus 74 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~--~~i~~~~~~~~~~~ 148 (341)
++.|.+||+.+++... + ..+....|.+... .++..+.+ +. +.+|++....
T Consensus 42 ~~~l~~~d~~~~~~~~-l------------~~~~~~~~SpDg~--------~la~~~~~~~~~~~~l~~~~~~~g~---- 96 (347)
T 2gop_A 42 ENTIVIENLKNNARRF-I------------ENATMPRISPDGK--------KIAFMRANEEKKVSEIWVADLETLS---- 96 (347)
T ss_dssp EEEEEEEETTTCCEEE-E------------ESCEEEEECTTSS--------EEEEEEEETTTTEEEEEEEETTTTE----
T ss_pred cceEEEEeCCCCceEE-c------------ccCCCeEECCCCC--------EEEEEEeccCCCcceEEEEECCCCc----
Confidence 6789999998776422 2 1133344444433 55555443 34 4444443211
Q ss_pred cCCceEEEEEeecCCceEEEEecCCCCEEEEeeCC---------------------------CeEEEEECCCCceeeecC
Q 019405 149 SSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKG---------------------------VEVNVWDLDKCEKIWTAK 201 (341)
Q Consensus 149 ~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------------------------~~v~i~d~~~~~~~~~~~ 201 (341)
...+... .. +..+.|+|+++.|+.++.+ ..|++||+.+++.+..+.
T Consensus 97 ----~~~l~~~--~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~ 169 (347)
T 2gop_A 97 ----SKKILEA--KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFE 169 (347)
T ss_dssp ----EEEEEEE--SE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEE
T ss_pred ----eEEEEcC--CC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeec
Confidence 2233332 23 8899999999998887642 579999998877633332
Q ss_pred CCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCC-------eEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEE
Q 019405 202 PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH-------QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIY 274 (341)
Q Consensus 202 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~-------~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 274 (341)
.. .+..+.| +|++ +++++..+. ...+|.+.++ . ...+..+ ..+..+ +|+|+.|+
T Consensus 170 ~~-----------~~~~~~~--spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~-~-~~~l~~~-~~~~~~--spdg~~l~ 230 (347)
T 2gop_A 170 KP-----------RFSSGIW--HRDK-IVVNVPHREIIPQYFKFWDIYIWEDG-K-EEKMFEK-VSFYAV--DSDGERIL 230 (347)
T ss_dssp EE-----------TTCEEEE--ETTE-EEEEEECCCSSCCSSCCEEEEEEETT-E-EEEEEEE-ESEEEE--EECSSCEE
T ss_pred CC-----------CcccccC--CCCe-EEEEEecccccccccccccEEEeCCC-c-eEEeccC-cceeeE--CCCCCEEE
Confidence 21 2567788 8899 777775542 3445544433 2 4444444 455544 99999888
Q ss_pred EEeCC--------CCEEEEECCCCeEEeEEeccccCceeE-EEecCCCCEEEEEeCCCcEEEEEcCCCce
Q 019405 275 IGNGS--------GDLASVDIRTGKLLGCFIGKCSGSIRS-IARHPTLPIIASCGLDSYLRFWDIKTRQL 335 (341)
Q Consensus 275 ~g~~d--------g~i~iwd~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 335 (341)
.++.+ ..|++|| +++.......+ ...+.. +.|+ ++ ++++++.++.++|| +.+++.
T Consensus 231 ~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~-~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~ 294 (347)
T 2gop_A 231 LYGKPEKKYMSEHNKLYIYD--GKEVMGILDEV-DRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEI 294 (347)
T ss_dssp EEECCSSSCCCSSCEEEEEC--SSCEEESSTTC-CSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSE
T ss_pred EEEccccCCccccceEEEEC--CCceEeccccC-CcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCce
Confidence 77644 3688888 56554444444 677886 9999 88 99999999999999 876654
No 193
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.57 E-value=1.2e-10 Score=98.52 Aligned_cols=281 Identities=11% Similarity=-0.044 Sum_probs=169.8
Q ss_pred ceeeeecC--CC---CeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEc----------cCCeEEE
Q 019405 15 LRALTFDS--LG---LIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR----------KNGLTDI 79 (341)
Q Consensus 15 ~~~~~~~~--~g---~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~----------~dg~i~i 79 (341)
.+++..+. .+ .+.+++.... +++.++.....+ .+++++|++ +|+++. .++.|.+
T Consensus 33 ~~~yv~~~~~~~~~~~v~v~D~~t~-----~~~~~i~~g~~p--~i~~spDg~----~lyv~n~~~~~~~rg~~~~~v~v 101 (373)
T 2mad_H 33 RRSYINLPAHHSAIIQQWVLDAGSG-----SILGHVNGGFLP--NPVAAHSGS----EFALASTSFSRIAKGKRTDYVEV 101 (373)
T ss_pred CEEEEeCCcccCCccEEEEEECCCC-----eEEEEecCCCCC--CeEECCCCC----EEEEEeccccccccCCCCCeEEE
Confidence 34555553 33 5677777654 565566443333 677887776 777765 3678999
Q ss_pred eeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcc--cceeEEEEeeecccccccCCceEEE-
Q 019405 80 LNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT--KGKASMRSIEVTKVSAESSCSTVKS- 156 (341)
Q Consensus 80 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~g~~~i~~~~~~~~~~~~~~~~v~~- 156 (341)
||..+.+.+..+.......+. .......+.+.+..+ .++.+.. ++.+.++| ...+ .+..
T Consensus 102 iD~~t~~~~~~i~~~~~~~~~-~g~~p~~~~~spDG~--------~l~v~n~~~~~~v~viD-~t~~--------~~~~~ 163 (373)
T 2mad_H 102 FDPVTFLPIADIELPDAPRFD-VGPYSWMNANTPNNA--------DLLFFQFAAGPAVGLVV-QGGS--------SDDQL 163 (373)
T ss_pred EECCCCcEEEEEECCCccccc-cCCCccceEECCCCC--------EEEEEecCCCCeEEEEE-CCCC--------EEeEE
Confidence 999988877766541000000 011222444444444 6666553 47788887 5443 2222
Q ss_pred EEeecCCceEEEEecCCC-CEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCee-eeEEEEEecCCCCEEEEEe
Q 019405 157 WNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTW-FTSAAFLSIDDHRKFVAGT 234 (341)
Q Consensus 157 ~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~l~~~~ 234 (341)
... ... +.+.|++ ..+++.+.||.+.++|. +++........... . .... .....+ .+++..++..+
T Consensus 164 i~~--~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~---~-~~~p~~~~~~~--~~~~~~~~~~~ 231 (373)
T 2mad_H 164 LSS--PTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAML---T-AAQNLLTQPAQ--ANKSGRIVWPV 231 (373)
T ss_pred cCC--Cce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccc---c-CCcceeeccee--EecCCEEEEEc
Confidence 222 122 3344444 45566678899999999 77766332210000 0 0011 122344 34444444444
Q ss_pred CCCeEEEEEcCCCCc-eeEEEEec----------CCCeEEEEEcCCCceEEEEeC----------CCCEEEEECCCCeEE
Q 019405 235 NDHQVRLYDTSAQRR-PVMSFDFR----------ETPIKAVAEEPDSFNIYIGNG----------SGDLASVDIRTGKLL 293 (341)
Q Consensus 235 ~d~~i~iwd~~~~~~-~~~~~~~~----------~~~v~~~~~~~~~~~l~~g~~----------dg~i~iwd~~~~~~~ 293 (341)
..+.+.+.|+..... .+..+... ......+.++|+++.+++... ++.|.++|+.+++.+
T Consensus 232 ~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv 311 (373)
T 2mad_H 232 YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTS 311 (373)
T ss_pred CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEE
Confidence 678999999875432 12222111 122344788999988887653 357999999999999
Q ss_pred eEEeccccCceeEEEecCCCC-EEEEEe-CCCcEEEEEcCCCceeee
Q 019405 294 GCFIGKCSGSIRSIARHPTLP-IIASCG-LDSYLRFWDIKTRQLLSA 338 (341)
Q Consensus 294 ~~~~~~~~~~i~~~~~~~~~~-~l~s~~-~dg~v~iwd~~~~~~~~~ 338 (341)
.++... ....+++|+|||+ +++++. .++.|.++|+.+++.+.+
T Consensus 312 ~~i~~g--~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 312 SQISLG--HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred EEEECC--CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 998753 4689999999999 777777 589999999999998877
No 194
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.57 E-value=2.8e-12 Score=116.94 Aligned_cols=248 Identities=12% Similarity=0.066 Sum_probs=160.6
Q ss_pred ceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcc------cceeEEEE
Q 019405 66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT------KGKASMRS 139 (341)
Q Consensus 66 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~g~~~i~~ 139 (341)
..|++++.|+.|..+|..+|+.+..+....... ....+....... .+ .++.+.. +|.+..+|
T Consensus 129 ~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~---~~~~~~~~p~v~-~~--------~v~v~~~~~~~~~~g~v~a~D 196 (677)
T 1kb0_A 129 GKVYVGAWDGRLIALDAATGKEVWHQNTFEGQK---GSLTITGAPRVF-KG--------KVIIGNGGAEYGVRGYITAYD 196 (677)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEETTTTCC---SSCBCCSCCEEE-TT--------EEEECCBCTTTCCBCEEEEEE
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeeecCCcCcC---cCcccccCcEEE-CC--------EEEEEecccccCCCCEEEEEE
Confidence 368889999999999999999988776531100 001111111111 11 4444443 57777777
Q ss_pred eeecccccccCCceEEEEEeec---------------------------------CCceEEEEecCCCCEEEEeeCCC--
Q 019405 140 IEVTKVSAESSCSTVKSWNVCA---------------------------------SGTIAFSKVDISEKFSLFGGKGV-- 184 (341)
Q Consensus 140 ~~~~~~~~~~~~~~v~~~~~~~---------------------------------~~~i~~~~~~~~~~~l~~~~~d~-- 184 (341)
....+. +|.... ......+++++++..++.+..++
T Consensus 197 ~~tG~~----------~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~ 266 (677)
T 1kb0_A 197 AETGER----------KWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSP 266 (677)
T ss_dssp TTTCCE----------EEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEES
T ss_pred CCCCcE----------EEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCcc
Confidence 654431 222211 11123567888888888877664
Q ss_pred -----------------eEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCC---CEEEEEeCCCeEEEEEc
Q 019405 185 -----------------EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH---RKFVAGTNDHQVRLYDT 244 (341)
Q Consensus 185 -----------------~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~l~~~~~d~~i~iwd~ 244 (341)
.|..+|.++++.++.++.................+.. ..++ ..++.++.+|.++++|.
T Consensus 267 w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~--~~dG~~~~~l~~~~~~G~l~~lD~ 344 (677)
T 1kb0_A 267 WSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADI--KIAGKPRKVILHAPKNGFFFVLDR 344 (677)
T ss_dssp SCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEE--EETTEEEEEEEECCTTSEEEEEET
T ss_pred ccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEec--ccCCcEeeEEEEECCCCEEEEEEC
Confidence 5999999999999887654322111111111122222 2356 67889999999999999
Q ss_pred CCCCceeEEEEecC-----------CCe------------------------EEEEEcCCCceEEEEeC-----------
Q 019405 245 SAQRRPVMSFDFRE-----------TPI------------------------KAVAEEPDSFNIYIGNG----------- 278 (341)
Q Consensus 245 ~~~~~~~~~~~~~~-----------~~v------------------------~~~~~~~~~~~l~~g~~----------- 278 (341)
.+++. +..+.... .++ ..++++|++.++++...
T Consensus 345 ~tG~~-l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~ 423 (677)
T 1kb0_A 345 TNGKF-ISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKK 423 (677)
T ss_dssp TTCCE-EEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTT
T ss_pred CCCCE-eccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccc
Confidence 99874 44443211 001 14688998888877543
Q ss_pred --------------------------------CCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEE
Q 019405 279 --------------------------------SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLR 326 (341)
Q Consensus 279 --------------------------------dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~ 326 (341)
.|.|..||+.+++.+..++. ..++....+...+.+++.++.||.++
T Consensus 424 ~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~--~~~~~~g~~~~~g~~v~~g~~dg~l~ 501 (677)
T 1kb0_A 424 WEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH--VSPWNGGTLTTAGNVVFQGTADGRLV 501 (677)
T ss_dssp CCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE--SSSCCCCEEEETTTEEEEECTTSEEE
T ss_pred cccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC--CCCCcCcceEeCCCEEEEECCCCcEE
Confidence 16799999999999888764 34566666777888888899999999
Q ss_pred EEEcCCCceeeeec
Q 019405 327 FWDIKTRQLLSAVC 340 (341)
Q Consensus 327 iwd~~~~~~~~~~~ 340 (341)
+||.++|+.+.++.
T Consensus 502 a~D~~tG~~lw~~~ 515 (677)
T 1kb0_A 502 AYHAATGEKLWEAP 515 (677)
T ss_dssp EEETTTCCEEEEEE
T ss_pred EEECCCCceeeeee
Confidence 99999999998763
No 195
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.56 E-value=4.8e-12 Score=104.68 Aligned_cols=242 Identities=9% Similarity=-0.004 Sum_probs=151.3
Q ss_pred CceeEEEeccCCCCCceEEE-------EccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccccccc
Q 019405 51 SNCVLAASIDDSQNDPLLAV-------ARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS 123 (341)
Q Consensus 51 ~~~~~~~s~~~~~~~~~l~~-------~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (341)
....++|..++. ++++ +..++.|.+||..+++....... ........+.++.+.+..+
T Consensus 19 ~~~~~~~~~~g~----l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~----~~~~~~~~~~~i~~~~~~g------- 83 (314)
T 1pjx_A 19 GAEGPVFDKNGD----FYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKP----EVNGYGGIPAGCQCDRDAN------- 83 (314)
T ss_dssp TCEEEEECTTSC----EEEEETTCEETTEECCEEEEECTTTCCEEEEECC----EETTEECCEEEEEECSSSS-------
T ss_pred CccCceECCCCC----EEEEEeccccCCCCCCEEEEEeCCCCcEEEEEec----ccCCCCCCCceEEEecCCC-------
Confidence 344566664444 5555 46789999999877765322110 0000113455555433313
Q ss_pred ceeEEEcccceeEEEEeeecccccccCCceEEEE--Ee---ecCCceEEEEecCCCCEEEEeeCC---------------
Q 019405 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSW--NV---CASGTIAFSKVDISEKFSLFGGKG--------------- 183 (341)
Q Consensus 124 ~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~--~~---~~~~~i~~~~~~~~~~~l~~~~~d--------------- 183 (341)
.+..+...+.+.+|+.+ . .+..+ .. .....+..++++++++++++...+
T Consensus 84 -~l~v~~~~~~l~~~d~~-g---------~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~ 152 (314)
T 1pjx_A 84 -QLFVADMRLGLLVVQTD-G---------TFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKF 152 (314)
T ss_dssp -EEEEEETTTEEEEEETT-S---------CEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSC
T ss_pred -cEEEEECCCCEEEEeCC-C---------CEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCC
Confidence 45555444567777754 2 22222 11 112347889999999888776554
Q ss_pred CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEec----CCCCEEEEE-eCCCeEEEEEcC-CCCc----eeEE
Q 019405 184 VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSI----DDHRKFVAG-TNDHQVRLYDTS-AQRR----PVMS 253 (341)
Q Consensus 184 ~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~l~~~-~~d~~i~iwd~~-~~~~----~~~~ 253 (341)
+.|..||.. ++....... ......+++ + ++++.++.+ ..++.|.+||.. .++. ....
T Consensus 153 ~~l~~~~~~-g~~~~~~~~----------~~~~~~i~~--~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~ 219 (314)
T 1pjx_A 153 GSIYCFTTD-GQMIQVDTA----------FQFPNGIAV--RHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGH 219 (314)
T ss_dssp EEEEEECTT-SCEEEEEEE----------ESSEEEEEE--EECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEE
T ss_pred CeEEEECCC-CCEEEeccC----------CCCcceEEE--ecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEE
Confidence 567777765 443322111 022567788 7 888665554 567899999986 3321 1112
Q ss_pred EEecC-CCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCC-EEEEEeCCCcEEEEEcC
Q 019405 254 FDFRE-TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP-IIASCGLDSYLRFWDIK 331 (341)
Q Consensus 254 ~~~~~-~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~dg~v~iwd~~ 331 (341)
+..+. .....++++++|+++++...++.|.+||..+++.+..+..+ ...+.+++|+|+++ ++++...++.|..|++.
T Consensus 220 ~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~-~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~ 298 (314)
T 1pjx_A 220 IPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCP-FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp CCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECS-SSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred CCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCC-CCCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence 22222 45788999999988888778889999999878777777665 57899999999999 44555567899999987
Q ss_pred C
Q 019405 332 T 332 (341)
Q Consensus 332 ~ 332 (341)
.
T Consensus 299 ~ 299 (314)
T 1pjx_A 299 R 299 (314)
T ss_dssp S
T ss_pred C
Confidence 5
No 196
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.55 E-value=8.8e-12 Score=113.90 Aligned_cols=247 Identities=12% Similarity=0.101 Sum_probs=155.6
Q ss_pred ceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEc------ccceeEEEE
Q 019405 66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT------TKGKASMRS 139 (341)
Q Consensus 66 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~~g~~~i~~ 139 (341)
..|++++.|+.|..+|.++|+.+..+....... ....+.+..... .+ .++.+. .+|.+..+|
T Consensus 122 g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~---~~~~~~~sP~v~-~g--------~v~vg~~~~~~~~~g~v~a~D 189 (689)
T 1yiq_A 122 GKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHK---RSYTITGAPRVV-NG--------KVVIGNGGAEFGVRGYVTAYD 189 (689)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCSCTT---SCCBCCSCCEEE-TT--------EEEECCBCTTTCCBCEEEEEE
T ss_pred CEEEEEccCCEEEEEECCCCCEeeeecCcCCCC---CCccccCCcEEE-CC--------EEEEEeCCCccCCCCEEEEEE
Confidence 368889999999999999999887776520100 000111100111 11 344433 256777777
Q ss_pred eeecccccccCCceEEEEEeec--------------------------------CCceEEEEecCCCCEEEEeeCCCe--
Q 019405 140 IEVTKVSAESSCSTVKSWNVCA--------------------------------SGTIAFSKVDISEKFSLFGGKGVE-- 185 (341)
Q Consensus 140 ~~~~~~~~~~~~~~v~~~~~~~--------------------------------~~~i~~~~~~~~~~~l~~~~~d~~-- 185 (341)
....+. +|.... ...-..++++|+..+++.++.++.
T Consensus 190 ~~tG~~----------~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w 259 (689)
T 1yiq_A 190 AETGKE----------AWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLW 259 (689)
T ss_dssp TTTCCE----------EEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESS
T ss_pred CCCCcE----------EEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCcc
Confidence 644331 222211 111125678888889998887764
Q ss_pred -----------------EEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCC---EEEEEeCCCeEEEEEcC
Q 019405 186 -----------------VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR---KFVAGTNDHQVRLYDTS 245 (341)
Q Consensus 186 -----------------v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~l~~~~~d~~i~iwd~~ 245 (341)
|..+|.++++.++.++.................... ..+++ .++.++.+|.++++|.+
T Consensus 260 ~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~--~~~G~~~~~v~~~~~~G~l~~lD~~ 337 (689)
T 1yiq_A 260 DPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAEL--PIDGKPRKVLMQAPKNGFFYVIDRA 337 (689)
T ss_dssp CHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEE--EETTEEEEEEEECCTTSEEEEEETT
T ss_pred ccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEee--ccCCcEEEEEEEECCCCeEEEEECC
Confidence 999999999999987653221111101111111122 12454 78889999999999999
Q ss_pred CCCceeEEEEecC-C--------------------------------------CeEEEEEcCCCceEEEEeC--------
Q 019405 246 AQRRPVMSFDFRE-T--------------------------------------PIKAVAEEPDSFNIYIGNG-------- 278 (341)
Q Consensus 246 ~~~~~~~~~~~~~-~--------------------------------------~v~~~~~~~~~~~l~~g~~-------- 278 (341)
+++. +....... . .-..++++|+..++++...
T Consensus 338 tG~~-l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~ 416 (689)
T 1yiq_A 338 TGEL-LSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEH 416 (689)
T ss_dssp TCCE-EEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEEC
T ss_pred CCCE-eccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeee
Confidence 9874 32221110 0 0112688888877776532
Q ss_pred -------------------------------------CCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeC
Q 019405 279 -------------------------------------SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGL 321 (341)
Q Consensus 279 -------------------------------------dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 321 (341)
+|.|+.||+.+++.+..++.+ .++..-.+...+.+++.++.
T Consensus 417 ~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~--~~~~~g~~~tagglvf~gt~ 494 (689)
T 1yiq_A 417 IPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV--TIFNGGTLSTAGNLVFEGSA 494 (689)
T ss_dssp CSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES--SSCCCCEEEETTTEEEEECT
T ss_pred ccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC--CCccCccceECCCEEEEECC
Confidence 377999999999999888754 34444466677889999999
Q ss_pred CCcEEEEEcCCCceeeee
Q 019405 322 DSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 322 dg~v~iwd~~~~~~~~~~ 339 (341)
||.|+.||.++|+.+.++
T Consensus 495 dg~l~a~D~~tG~~lw~~ 512 (689)
T 1yiq_A 495 DGRVIAYAADTGEKLWEQ 512 (689)
T ss_dssp TSEEEEEETTTCCEEEEE
T ss_pred CCcEEEEECCCCccceee
Confidence 999999999999999775
No 197
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.54 E-value=1.3e-11 Score=101.32 Aligned_cols=190 Identities=9% Similarity=-0.076 Sum_probs=133.3
Q ss_pred eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCC
Q 019405 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP 204 (341)
Q Consensus 125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~ 204 (341)
.++++..++.+..|+... + +..+.. ....+..++++++++++++...++.|.+||..+++.........
T Consensus 42 l~~~~~~~~~i~~~~~~~---------~-~~~~~~-~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~ 110 (296)
T 3e5z_A 42 VIFSDVRQNRTWAWSDDG---------Q-LSPEMH-PSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFE 110 (296)
T ss_dssp EEEEEGGGTEEEEEETTS---------C-EEEEES-SCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEET
T ss_pred EEEEeCCCCEEEEEECCC---------C-eEEEEC-CCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccC
Confidence 577778889999988632 2 444443 44678899999999988877777899999998776543322111
Q ss_pred CCccCccCCeeeeEEEEEecCCCCEEEEE----e-------------CCCeEEEEEcCCCCceeEEEEecCCCeEEEEEc
Q 019405 205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAG----T-------------NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEE 267 (341)
Q Consensus 205 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~----~-------------~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 267 (341)
.. ....+..+++ +|+++++++. + ..+.|..++.. ++ +..+..+......++|+
T Consensus 111 ~~-----~~~~~~~i~~--d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~--~~~~~~~~~~~~gi~~s 180 (296)
T 3e5z_A 111 GK-----KLNSPNDVCL--APDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT--LSAPIRDRVKPNGLAFL 180 (296)
T ss_dssp TE-----ECCCCCCEEE--CTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC--EEEEECCCSSEEEEEEC
T ss_pred CC-----CCCCCCCEEE--CCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC--EEEeecCCCCCccEEEC
Confidence 10 0123667888 8899888873 2 13456556544 22 44555566677899999
Q ss_pred CCCceEEEEeCCCCEEEEECC-CCeE---EeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 268 PDSFNIYIGNGSGDLASVDIR-TGKL---LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 268 ~~~~~l~~g~~dg~i~iwd~~-~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
|+++.+++.+.++.|++||+. +++. ...+..+ ...+..++++++|+++++. ++.|.+||.+ ++.+..+
T Consensus 181 ~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~-~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~ 252 (296)
T 3e5z_A 181 PSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVE-PGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRV 252 (296)
T ss_dssp TTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCS-SSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEE
T ss_pred CCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCC-CCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEE
Confidence 999988777778999999986 5554 3344223 5667889999999877666 7889999986 7766554
No 198
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.54 E-value=2.7e-12 Score=107.80 Aligned_cols=222 Identities=11% Similarity=0.083 Sum_probs=134.4
Q ss_pred CceeEEEeccCCCCCceEEEEccC---C--eEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccce
Q 019405 51 SNCVLAASIDDSQNDPLLAVARKN---G--LTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT 125 (341)
Q Consensus 51 ~~~~~~~s~~~~~~~~~l~~~~~d---g--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (341)
.+..++||+|+. +|+..+.+ + .|.+|++.+++........ . +..+.|.+... .
T Consensus 60 ~~~~~~~SpDg~----~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~---------~-~~~~~wspdg~--------~ 117 (347)
T 2gop_A 60 NATMPRISPDGK----KIAFMRANEEKKVSEIWVADLETLSSKKILEAK---------N-IRSLEWNEDSR--------K 117 (347)
T ss_dssp SCEEEEECTTSS----EEEEEEEETTTTEEEEEEEETTTTEEEEEEEES---------E-EEEEEECTTSS--------E
T ss_pred cCCCeEECCCCC----EEEEEEeccCCCcceEEEEECCCCceEEEEcCC---------C-ccceeECCCCC--------E
Confidence 455566666555 78877654 3 3888888877654443331 2 44555544333 5
Q ss_pred eEEEcc---------------------------cceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEE
Q 019405 126 LLTCTT---------------------------KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSL 178 (341)
Q Consensus 126 l~~~~~---------------------------~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~ 178 (341)
|+.++. ...+.+|++.... .++.... . .+..+.|+|++ +++
T Consensus 118 l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~--------~~~~l~~--~-~~~~~~~spdg-~~~ 185 (347)
T 2gop_A 118 LLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE--------VIEEFEK--P-RFSSGIWHRDK-IVV 185 (347)
T ss_dssp EEEEEECCCC---------CCCC---------CEEEEEEEETTTTE--------EEEEEEE--E-TTCEEEEETTE-EEE
T ss_pred EEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe--------EEeeecC--C-CcccccCCCCe-EEE
Confidence 555542 2455666653221 1133322 2 67788999999 777
Q ss_pred EeeCCC---------eEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCC--------CeEEE
Q 019405 179 FGGKGV---------EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND--------HQVRL 241 (341)
Q Consensus 179 ~~~~d~---------~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d--------~~i~i 241 (341)
++..++ .|.++| +++. ..+..+ ..+. .+ +|++++|+..+.+ ..|.+
T Consensus 186 ~~~~~~~~~~~~~~~~l~~~d--~~~~-~~l~~~----------~~~~--~~--spdg~~l~~~~~~~~~~~~~~~~l~~ 248 (347)
T 2gop_A 186 NVPHREIIPQYFKFWDIYIWE--DGKE-EKMFEK----------VSFY--AV--DSDGERILLYGKPEKKYMSEHNKLYI 248 (347)
T ss_dssp EEECCCSSCCSSCCEEEEEEE--TTEE-EEEEEE----------ESEE--EE--EECSSCEEEEECCSSSCCCSSCEEEE
T ss_pred EEecccccccccccccEEEeC--CCce-EEeccC----------ccee--eE--CCCCCEEEEEEccccCCccccceEEE
Confidence 765542 355555 4433 222211 1122 23 6789988877654 36888
Q ss_pred EEcCCCCceeEEEEecCCCeEE-EEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEe
Q 019405 242 YDTSAQRRPVMSFDFRETPIKA-VAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG 320 (341)
Q Consensus 242 wd~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 320 (341)
|| +++ .......+...+.. +.|+ ++ ++++++.++.++|| +.+++... +..+ ...|.+++|+| .++++++
T Consensus 249 ~d--~~~-~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~-~~~~-~~~v~~~~~s~--~~~~~~~ 318 (347)
T 2gop_A 249 YD--GKE-VMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKP-IAKG-RHWIMGFDVDE--IVVYLKE 318 (347)
T ss_dssp EC--SSC-EEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEE-EECS-SSEEEEEEESS--SEEEEEE
T ss_pred EC--CCc-eEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEE-EecC-CCeEEeeeeeC--cEEEEEc
Confidence 88 333 22222334567776 8999 88 88899999999999 87666543 4444 67899999999 6777777
Q ss_pred CCCcE-EEEEcCCCc
Q 019405 321 LDSYL-RFWDIKTRQ 334 (341)
Q Consensus 321 ~dg~v-~iwd~~~~~ 334 (341)
.++.. .+|.+. ++
T Consensus 319 ~~~~~~~l~~~~-g~ 332 (347)
T 2gop_A 319 TATRLRELFTWD-GE 332 (347)
T ss_dssp CSSSCCEEEEES-SS
T ss_pred CCCChHHheEeC-Cc
Confidence 77665 778776 54
No 199
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.54 E-value=8.5e-12 Score=115.06 Aligned_cols=195 Identities=11% Similarity=0.055 Sum_probs=130.2
Q ss_pred eeEEEccc-c----eeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCe--------------
Q 019405 125 TLLTCTTK-G----KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVE-------------- 185 (341)
Q Consensus 125 ~l~~~~~~-g----~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-------------- 185 (341)
.++.+..+ | .+.+|++.... .+.. ... ...+..++|+||++.|+.++.++.
T Consensus 138 ~la~~~~~~G~~~~~i~v~d~~tg~--------~~~~-~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~ 207 (710)
T 2xdw_A 138 YFAYGLSASGSDWVTIKFMKVDGAK--------ELPD-VLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLH 207 (710)
T ss_dssp EEEEEEEETTCSCEEEEEEETTTTE--------EEEE-EEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCC
T ss_pred EEEEEEcCCCCceEEEEEEECCCCC--------CCcc-ccc-CcccceEEEEeCCCEEEEEEECCccccccccccccCCC
Confidence 55544433 3 78888875433 1111 111 112567899999999998887765
Q ss_pred --EEEEECCCCcee--eecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeC-----CCeEEEEEcCC------CCce
Q 019405 186 --VNVWDLDKCEKI--WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-----DHQVRLYDTSA------QRRP 250 (341)
Q Consensus 186 --v~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~------~~~~ 250 (341)
|++|++.+++.. ..+.... ++.++..+.| +|++++|+..+. +..|++||+.+ +...
T Consensus 208 ~~v~~~~l~t~~~~~~~v~~~~~-------~~~~~~~~~~--SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~ 278 (710)
T 2xdw_A 208 QKLYYHVLGTDQSEDILCAEFPD-------EPKWMGGAEL--SDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILK 278 (710)
T ss_dssp CEEEEEETTSCGGGCEEEECCTT-------CTTCEEEEEE--CTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCC
T ss_pred CEEEEEECCCCcccceEEeccCC-------CCeEEEEEEE--cCCCCEEEEEEEccCCCccEEEEEECcccccccCCccc
Confidence 999999876522 2222211 1244678889 999999888765 67899999986 4323
Q ss_pred eEEEEecCCCeEEEEEcCCCceEEEEeCC----CCEEEEECCCCeE--EeEEecccc-CceeEEEecCCCCEEEEEeCCC
Q 019405 251 VMSFDFRETPIKAVAEEPDSFNIYIGNGS----GDLASVDIRTGKL--LGCFIGKCS-GSIRSIARHPTLPIIASCGLDS 323 (341)
Q Consensus 251 ~~~~~~~~~~v~~~~~~~~~~~l~~g~~d----g~i~iwd~~~~~~--~~~~~~~~~-~~i~~~~~~~~~~~l~s~~~dg 323 (341)
...+..+...+.. .|+|+|..|+..+.. +.|.+||+.+++. ...+..+.. ..+..++|++++.++++...|+
T Consensus 279 ~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g 357 (710)
T 2xdw_A 279 WVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDV 357 (710)
T ss_dssp CEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETT
T ss_pred eEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECC
Confidence 5667767666655 488888877766543 3599999987642 234444423 3688899998888888998888
Q ss_pred c--EEEEEcCCCceeeee
Q 019405 324 Y--LRFWDIKTRQLLSAV 339 (341)
Q Consensus 324 ~--v~iwd~~~~~~~~~~ 339 (341)
. |++||+.+|+.+..+
T Consensus 358 ~~~l~~~~~~~g~~~~~l 375 (710)
T 2xdw_A 358 KNTLQLHDLATGALLKIF 375 (710)
T ss_dssp EEEEEEEETTTCCEEEEE
T ss_pred EEEEEEEECCCCCEEEec
Confidence 4 566787677765554
No 200
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.53 E-value=4.6e-12 Score=117.35 Aligned_cols=243 Identities=12% Similarity=-0.015 Sum_probs=146.0
Q ss_pred CceeEEEeccCCCCCceEEEEccC-----CeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccce
Q 019405 51 SNCVLAASIDDSQNDPLLAVARKN-----GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT 125 (341)
Q Consensus 51 ~~~~~~~s~~~~~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (341)
.+..++||+| |++||.+..+ ..|++||+.+++.+...... ..+..+.|.+. + .
T Consensus 164 ~~~~~~~SPD----G~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~---------~~~~~~~wspD-~--------~ 221 (741)
T 1yr2_A 164 ALDAWAASDD----GRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKW---------VKFSGLAWLGN-D--------A 221 (741)
T ss_dssp EEEEEEECTT----SSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEE---------EESCCCEESTT-S--------E
T ss_pred EEEeEEECCC----CCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCC---------ceeccEEEECC-C--------E
Confidence 3444555554 4488876544 46999999998765431110 11123444444 3 5
Q ss_pred eEEEcccc--------------eeEEEEeeecccccccCCceEEEEEeec-CCceEEEEecCCCCEEEEeeCCC-----e
Q 019405 126 LLTCTTKG--------------KASMRSIEVTKVSAESSCSTVKSWNVCA-SGTIAFSKVDISEKFSLFGGKGV-----E 185 (341)
Q Consensus 126 l~~~~~~g--------------~~~i~~~~~~~~~~~~~~~~v~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~-----~ 185 (341)
|+.+..++ .+.+|++.... .....++.... ...+..+.|+|||++|+..+.++ .
T Consensus 222 l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~------~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~ 295 (741)
T 1yr2_A 222 LLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQ------SADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNT 295 (741)
T ss_dssp EEEEECCCC--------CCCCCEEEEEETTSCG------GGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCE
T ss_pred EEEEEecCcccccccccCCCCCEEEEEECCCCc------hhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcce
Confidence 55555443 35666653221 11233443322 22478899999999988777543 8
Q ss_pred EEEEECCCC--ceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeC----CCeEEEEEcCCC-CceeEEEEecC
Q 019405 186 VNVWDLDKC--EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN----DHQVRLYDTSAQ-RRPVMSFDFRE 258 (341)
Q Consensus 186 v~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~-~~~~~~~~~~~ 258 (341)
|++||+.++ +....+..+. ..+... + .++++.|+..+. ++.|.+||+.++ ......+..+.
T Consensus 296 l~~~d~~~~~~~~~~~l~~~~---------~~~~~~-~--~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~ 363 (741)
T 1yr2_A 296 VHVARVTNGKIGPVTALIPDL---------KAQWDF-V--DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESK 363 (741)
T ss_dssp EEEEEEETTEECCCEEEECSS---------SSCEEE-E--EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCS
T ss_pred EEEEECCCCCCcccEEecCCC---------CceEEE-E--eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCC
Confidence 999999876 3123333222 112222 2 357788777765 345999998874 23233333344
Q ss_pred CCeEEEEEcCCCceEEEEeCCCCEEEEECC-CCeEEeEEeccccCceeEEEecCCCCEEEEE----eCCCcEEEEEcCCC
Q 019405 259 TPIKAVAEEPDSFNIYIGNGSGDLASVDIR-TGKLLGCFIGKCSGSIRSIARHPTLPIIASC----GLDSYLRFWDIKTR 333 (341)
Q Consensus 259 ~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~----~~dg~v~iwd~~~~ 333 (341)
..+..+.++ ++.++++...|+..+||.+. +++....+..+..+.+..+.++|+++.|+.. ...++|++||+.++
T Consensus 364 ~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 442 (741)
T 1yr2_A 364 DNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATA 442 (741)
T ss_dssp SEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTT
T ss_pred CeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 456677887 56677888888887766543 4566666654335678899999998855522 24578999999887
Q ss_pred c
Q 019405 334 Q 334 (341)
Q Consensus 334 ~ 334 (341)
+
T Consensus 443 ~ 443 (741)
T 1yr2_A 443 K 443 (741)
T ss_dssp E
T ss_pred c
Confidence 6
No 201
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.53 E-value=1.7e-11 Score=104.40 Aligned_cols=275 Identities=14% Similarity=0.054 Sum_probs=168.9
Q ss_pred CCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEc----------cCCeEEEeeCCCCcchheeec
Q 019405 24 GLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR----------KNGLTDILNPLNGDLRVAISN 93 (341)
Q Consensus 24 g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~ 93 (341)
+.|.+++..+. +++.++.-...+ -+++++|++ +|+++. .++.|.++|..+++.+.++..
T Consensus 99 ~~VsVID~~t~-----~vv~~I~vG~~P--gia~SpDgk----~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v 167 (426)
T 3c75_H 99 TQQFVIDGSTG-----RILGMTDGGFLP--HPVAAEDGS----FFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIEL 167 (426)
T ss_dssp EEEEEEETTTT-----EEEEEEEECSSC--EEEECTTSS----CEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEE
T ss_pred CeEEEEECCCC-----EEEEEEECCCCC--ceEECCCCC----EEEEEeccccccccCCCCCEEEEEECCCCcEEEEEEC
Confidence 67888888776 666666443344 678888777 676665 467899999999988887764
Q ss_pred cCCCCCCCCCCceeeEeeeeccccccccccceeEEEcc--cceeEEEEeeecccccccCCceEEEEEeecCCceEEEEec
Q 019405 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT--KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD 171 (341)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~ 171 (341)
.....+. .......+.+.+..+ .++++.. ++.+.+.|+...+ .+..+.+ .+. ....
T Consensus 168 ~g~~r~~-~g~~P~~~~~spDGk--------~lyV~n~~~~~~VsVID~~t~k--------vv~~I~v--~g~---~~~~ 225 (426)
T 3c75_H 168 PDAPRFL-VGTYQWMNALTPDNK--------NLLFYQFSPAPAVGVVDLEGKT--------FDRMLDV--PDC---YHIF 225 (426)
T ss_dssp TTCCCCC-BSCCGGGSEECTTSS--------EEEEEECSSSCEEEEEETTTTE--------EEEEEEC--CSE---EEEE
T ss_pred CCccccc-cCCCcceEEEcCCCC--------EEEEEecCCCCeEEEEECCCCe--------EEEEEEc--CCc---eeec
Confidence 1000000 001122333333333 5555543 5778888875443 2333333 111 1222
Q ss_pred CCC-CEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCce
Q 019405 172 ISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP 250 (341)
Q Consensus 172 ~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 250 (341)
|++ ..+++.+.||.+.+.+..+++...... . .+..........+.| .+++..++.....+.|.+.|.......
T Consensus 226 p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~-~---~~~v~~~p~~~~~~~--~~dg~~~~~~s~~g~V~ViD~~~~~~~ 299 (426)
T 3c75_H 226 PASPTVFYMNCRDGSLARVDFADGETKVTNT-E---VFHTEDELLINHPAF--SLRSGRLVWPTYTGKIFQADLTAEGAT 299 (426)
T ss_dssp EEETTEEEEEETTSSEEEEECCTTCCEEEEC-C---CCSCTTSCBCSCCEE--CTTTCEEEEEBTTSEEEEEEECSSCEE
T ss_pred cCCCcEEEEEcCCCCEEEEECCCCcEEEEee-e---eeccCCCceeeEeee--cCCCCEEEEEeCCCcEEEEeccCCceE
Confidence 322 455556667777777775554432111 0 000000011123456 778887777778899999998754311
Q ss_pred e-EEEEe----------cCCCeEEEEEcCCCceEEEEeC----------CCCEEEEECCCCeEEeEEeccccCceeEEEe
Q 019405 251 V-MSFDF----------RETPIKAVAEEPDSFNIYIGNG----------SGDLASVDIRTGKLLGCFIGKCSGSIRSIAR 309 (341)
Q Consensus 251 ~-~~~~~----------~~~~v~~~~~~~~~~~l~~g~~----------dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~ 309 (341)
+ ..+.. .......++++|+++.+++... ++.|.++|+.+.+.+.++... .....++|
T Consensus 300 v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg--~~P~gia~ 377 (426)
T 3c75_H 300 FRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG--HEIDSINV 377 (426)
T ss_dssp ECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEE
T ss_pred EeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC--CCcCeEEE
Confidence 1 11110 0011223689999887777642 357999999999999999754 36889999
Q ss_pred cCCCC-EEEEEe-CCCcEEEEEcCCCceeeee
Q 019405 310 HPTLP-IIASCG-LDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 310 ~~~~~-~l~s~~-~dg~v~iwd~~~~~~~~~~ 339 (341)
+|+++ +++++. .++.|.++|+.+++.++++
T Consensus 378 spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 378 SQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp CCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred ccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 99999 888888 5899999999999999875
No 202
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.51 E-value=1.1e-12 Score=110.30 Aligned_cols=178 Identities=9% Similarity=0.031 Sum_probs=123.6
Q ss_pred ceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccc---cCCceEEEEEeecCCceEEEEecCCCCEEEEee
Q 019405 105 GIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAE---SSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG 181 (341)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~---~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~ 181 (341)
++..+++-+..+ .+++++.++ +.+|++..-..... ........ ..... |..++| ++++|+++
T Consensus 39 ~~nlLais~~~g--------ll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~--~~lp~-V~~l~f--d~~~L~v~- 103 (388)
T 1xip_A 39 SLQNLDISNSKS--------LFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWE--KEIPD-VIFVCF--HGDQVLVS- 103 (388)
T ss_dssp CCBCEEEETTTT--------EEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEE--EECTT-EEEEEE--ETTEEEEE-
T ss_pred cccEEEEcCCCC--------EEEEeCCCE-EEEEEhhHhhhhhccccccccceEE--eeCCC-eeEEEE--CCCEEEEE-
Confidence 344555555544 778887764 55588654331100 00112122 23455 999999 89999998
Q ss_pred CCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCe
Q 019405 182 KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPI 261 (341)
Q Consensus 182 ~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v 261 (341)
.++.|++||+.+.........+. ..+.++.+. .| .++++..||.|.+||+.++.. .. +...|
T Consensus 104 ~~~~l~v~dv~sl~~~~~~~~~~---------~~v~~i~~~-~p---~~av~~~dG~L~v~dl~~~~~-~~----~~~~V 165 (388)
T 1xip_A 104 TRNALYSLDLEELSEFRTVTSFE---------KPVFQLKNV-NN---TLVILNSVNDLSALDLRTKST-KQ----LAQNV 165 (388)
T ss_dssp ESSEEEEEESSSTTCEEEEEECS---------SCEEEEEEC-SS---EEEEEETTSEEEEEETTTCCE-EE----EEESE
T ss_pred cCCcEEEEEchhhhccCccceee---------cceeeEEec-CC---CEEEEECCCCEEEEEccCCcc-cc----ccCCc
Confidence 88999999998765444333322 236666663 22 388889999999999997653 22 33589
Q ss_pred EEEEEcCCCceEEEEeCCCCEEEEECCCCeE--EeEE------e---ccccCceeEEEecCCCCEEEE
Q 019405 262 KAVAEEPDSFNIYIGNGSGDLASVDIRTGKL--LGCF------I---GKCSGSIRSIARHPTLPIIAS 318 (341)
Q Consensus 262 ~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~--~~~~------~---~~~~~~i~~~~~~~~~~~l~s 318 (341)
++++|||+| ++.|..||.+++|+...++. ..++ . +| ...|.++.|.+++.++++
T Consensus 166 s~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~-~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 166 TSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVE-EYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTT-TSEEEEEEESSSSEEEEE
T ss_pred eEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCC-CeeEEEEEEecCCeEEEE
Confidence 999999999 67899999999999988775 5556 2 24 678999999999998876
No 203
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.50 E-value=5e-10 Score=91.71 Aligned_cols=236 Identities=8% Similarity=-0.002 Sum_probs=147.5
Q ss_pred CCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEE
Q 019405 50 SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC 129 (341)
Q Consensus 50 ~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (341)
..+..+++..+ +.++++...++.|..||.. ++. ..+... .....+.++..-+... .+++.
T Consensus 62 ~~~~~i~~~~~----g~l~v~~~~~~~v~~~d~~-g~~-~~~~~~------~~~~~~~~i~~~~~g~--------l~v~~ 121 (300)
T 2qc5_A 62 AKVMCLIVSSL----GDIWFTENGANKIGKLSKK-GGF-TEYPLP------QPDSGPYGITEGLNGD--------IWFTQ 121 (300)
T ss_dssp CCEEEEEECTT----SCEEEEETTTTEEEEECTT-SCE-EEEECS------STTCCEEEEEECSTTC--------EEEEE
T ss_pred CcceeEEECCC----CCEEEEecCCCeEEEECCC-CCe-EEecCC------CCCCCCccceECCCCC--------EEEEc
Confidence 34555555544 4466666667899999987 554 222221 1123455555433222 55555
Q ss_pred cccceeEEEEeeecccccccCCceEEEEEee-cCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCcc
Q 019405 130 TTKGKASMRSIEVTKVSAESSCSTVKSWNVC-ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSL 208 (341)
Q Consensus 130 ~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~ 208 (341)
..++.+..++.. +.+..+... ....+..+++++++++.++...++.|..+|. +++... +....
T Consensus 122 ~~~~~i~~~~~~----------g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~---- 185 (300)
T 2qc5_A 122 LNGDRIGKLTAD----------GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE-YPLPT---- 185 (300)
T ss_dssp TTTTEEEEECTT----------SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSS----
T ss_pred cCCCeEEEECCC----------CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE-eeCCC----
Confidence 556777777643 233333332 2356889999999997776666789999998 554432 22111
Q ss_pred CccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECC
Q 019405 209 GIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR 288 (341)
Q Consensus 209 ~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~ 288 (341)
....+..+++ .+++++.++....+.|.+||. +++.....+..+...+.+++++++|++.++...++.|..||.
T Consensus 186 ---~~~~~~~i~~--d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~- 258 (300)
T 2qc5_A 186 ---NAAAPVGITS--GNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN- 258 (300)
T ss_dssp ---TTCCEEEEEE--CTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-
T ss_pred ---CCCCcceEEE--CCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-
Confidence 1134778888 788877777666788999998 333211112223456889999999987766666789999998
Q ss_pred CCeEEe-EEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcC
Q 019405 289 TGKLLG-CFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331 (341)
Q Consensus 289 ~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~ 331 (341)
+++... .+... ...+.++++.++|.++++.. . .|..+|.+
T Consensus 259 ~g~~~~~~~~~~-~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 259 DNTIQEYQLQTE-NAEPHGITFGKDGSVWFALK-C-KIGKLNLN 299 (300)
T ss_dssp TSCEEEEECCST-TCCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred CCcEEEEECCcc-CCccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence 454432 22322 45688999999998776665 4 77777754
No 204
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.50 E-value=5.6e-10 Score=91.42 Aligned_cols=237 Identities=8% Similarity=0.010 Sum_probs=154.3
Q ss_pred CCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEE
Q 019405 50 SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC 129 (341)
Q Consensus 50 ~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (341)
.....+++..++. ++++...++.|.+||.. ++... +... .....+..+..-+... .+++.
T Consensus 20 ~~p~~i~~d~~g~----l~v~~~~~~~v~~~~~~-~~~~~-~~~~------~~~~~~~~i~~~~~g~--------l~v~~ 79 (300)
T 2qc5_A 20 SGPYGITSSEDGK----VWFTQHKANKISSLDQS-GRIKE-FEVP------TPDAKVMCLIVSSLGD--------IWFTE 79 (300)
T ss_dssp CCEEEEEECTTSC----EEEEETTTTEEEEECTT-SCEEE-EECS------STTCCEEEEEECTTSC--------EEEEE
T ss_pred CCcceeeECCCCC----EEEEcCCCCeEEEECCC-CceEE-EECC------CCCCcceeEEECCCCC--------EEEEe
Confidence 4455666665544 66666678999999987 54432 2211 1123455555432222 45555
Q ss_pred cccceeEEEEeeecccccccCCceEEEEEee-cCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceee-ecCCCCCCc
Q 019405 130 TTKGKASMRSIEVTKVSAESSCSTVKSWNVC-ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIW-TAKPPPKNS 207 (341)
Q Consensus 130 ~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~-~~~~~~~~~ 207 (341)
..++.+..++.. +.+..+... ....+..++++++++++++...++.|..+|.. ++... .+...
T Consensus 80 ~~~~~v~~~d~~----------g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~---- 144 (300)
T 2qc5_A 80 NGANKIGKLSKK----------GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNK---- 144 (300)
T ss_dssp TTTTEEEEECTT----------SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSST----
T ss_pred cCCCeEEEECCC----------CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCC----
Confidence 556778777643 233334332 23568899999999888877778899999987 54432 22211
Q ss_pred cCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEE--ecCCCeEEEEEcCCCceEEEEeCCCCEEEE
Q 019405 208 LGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD--FRETPIKAVAEEPDSFNIYIGNGSGDLASV 285 (341)
Q Consensus 208 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~g~~dg~i~iw 285 (341)
...+..+++ .+++++.++...++.|..+|. +++. ..+. .+...+..+++++++.+.++....+.|.+|
T Consensus 145 -----~~~~~~i~~--d~~g~l~v~~~~~~~i~~~~~-~g~~--~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~ 214 (300)
T 2qc5_A 145 -----GSYPAFITL--GSDNALWFTENQNNSIGRITN-TGKL--EEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRI 214 (300)
T ss_dssp -----TCCEEEEEE--CTTSSEEEEETTTTEEEEECT-TCCE--EEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred -----CCCceeEEE--CCCCCEEEEecCCCeEEEECC-CCcE--EEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEE
Confidence 134778888 888887777666789999998 4342 2232 234568899999999777766667789999
Q ss_pred ECCCCeEEeE-EeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCc
Q 019405 286 DIRTGKLLGC-FIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ 334 (341)
Q Consensus 286 d~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 334 (341)
|. +++.... +... ...+.+++++++|+++++...++.|..||. +++
T Consensus 215 ~~-~g~~~~~~~~~~-~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~ 261 (300)
T 2qc5_A 215 TT-TGEISEYDIPTP-NARPHAITAGKNSEIWFTEWGANQIGRITN-DNT 261 (300)
T ss_dssp CT-TCCEEEEECSST-TCCEEEEEECSTTCEEEEETTTTEEEEECT-TSC
T ss_pred cC-CCcEEEEECCCC-CCCceEEEECCCCCEEEeccCCCeEEEECC-CCc
Confidence 98 5554332 2233 467889999999997777767789999998 454
No 205
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.48 E-value=1.1e-12 Score=110.13 Aligned_cols=155 Identities=13% Similarity=0.126 Sum_probs=116.7
Q ss_pred ceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeee-cCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEE
Q 019405 164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT-AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY 242 (341)
Q Consensus 164 ~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iw 242 (341)
.+..+++++...++++|+.+ .+.+|++...+.... -............+. |+.++| ++++|+++ .++.|++|
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f----d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF----HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE----ETTEEEEE-ESSEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE----CCCEEEEE-cCCcEEEE
Confidence 68899999999999999988 577798764331110 000000001122345 899999 78899998 88999999
Q ss_pred EcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCC
Q 019405 243 DTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLD 322 (341)
Q Consensus 243 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d 322 (341)
|+++... ......|+.++.++.+.+. .++++..||.|.+||+.+++... + ...|.+++|+|+| ++.+..|
T Consensus 112 dv~sl~~-~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~-~~~Vs~v~WSpkG--~~vg~~d 181 (388)
T 1xip_A 112 DLEELSE-FRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----L-AQNVTSFDVTNSQ--LAVLLKD 181 (388)
T ss_dssp ESSSTTC-EEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----E-EESEEEEEECSSE--EEEEETT
T ss_pred Echhhhc-cCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----c-cCCceEEEEcCCc--eEEEEcC
Confidence 9988664 5566778888888877654 38888999999999999887653 2 4589999999999 7788999
Q ss_pred CcEEEEEcCCCce
Q 019405 323 SYLRFWDIKTRQL 335 (341)
Q Consensus 323 g~v~iwd~~~~~~ 335 (341)
|.+++|+...+++
T Consensus 182 g~i~~~~~~~~~~ 194 (388)
T 1xip_A 182 RSFQSFAWRNGEM 194 (388)
T ss_dssp SCEEEEEEETTEE
T ss_pred CcEEEEcCCCccc
Confidence 9999999887664
No 206
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.42 E-value=6e-10 Score=95.52 Aligned_cols=240 Identities=13% Similarity=0.061 Sum_probs=147.6
Q ss_pred ceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcc
Q 019405 52 NCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT 131 (341)
Q Consensus 52 ~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (341)
...+++.+ ++.++++...++.|++||.++++........ .... +.+.+... .++.+..
T Consensus 133 P~~la~d~----~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~---------~~~~-ia~~~~g~--------~l~~~d~ 190 (409)
T 3hrp_A 133 MWGIAAVG----NNTVLAYQRDDPRVRLISVDDNKVTTVHPGF---------KGGK-PAVTKDKQ--------RVYSIGW 190 (409)
T ss_dssp EEEEEECS----TTEEEEEETTTTEEEEEETTTTEEEEEEETC---------CBCB-CEECTTSS--------EEEEEBS
T ss_pred ceEEEEeC----CCCEEEEecCCCcEEEEECCCCEEEEeeccC---------CCCc-eeEecCCC--------cEEEEec
Confidence 34455553 4457777777899999999876654443321 1112 33333333 6666666
Q ss_pred cc--eeEEEEeeecccccccCCceEEEE-E--eecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCC
Q 019405 132 KG--KASMRSIEVTKVSAESSCSTVKSW-N--VCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKN 206 (341)
Q Consensus 132 ~g--~~~i~~~~~~~~~~~~~~~~v~~~-~--~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~ 206 (341)
++ .+.+++..... ..... . ........+++++|++..|+.+..++.|+.||..++............
T Consensus 191 ~~~~~I~~~d~~~~~--------~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g 262 (409)
T 3hrp_A 191 EGTHTVYVYMKASGW--------APTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSG 262 (409)
T ss_dssp STTCEEEEEEGGGTT--------CEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCS
T ss_pred CCCceEEEEEcCCCc--------eeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccC
Confidence 55 55555543211 11121 0 112345678999996555666777889999999876533220000000
Q ss_pred ccCccCCeeeeEEEEEecC-CCCEEEEEeCCCeEEEEEcCCCCceeEEEEecC---------------CCeEEEEEcCCC
Q 019405 207 SLGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE---------------TPIKAVAEEPDS 270 (341)
Q Consensus 207 ~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---------------~~v~~~~~~~~~ 270 (341)
... ..+...++| +| ++.++++-..++.|+.|+.... +..+.++. .....++++|+|
T Consensus 263 ~~~---~~P~~~ia~--~p~~g~lyv~d~~~~~I~~~~~~g~---~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG 334 (409)
T 3hrp_A 263 SLG---TNPGPYLIY--YFVDSNFYMSDQNLSSVYKITPDGE---CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDG 334 (409)
T ss_dssp CCC---CSSCCEEEE--ETTTTEEEEEETTTTEEEEECTTCC---EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTC
T ss_pred CCC---CCccccEEE--eCCCCEEEEEeCCCCEEEEEecCCC---EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCC
Confidence 000 011127899 77 4666666677889999987642 33343332 347889999999
Q ss_pred ceEEEEe-CCCCEEEEECCCCeEEeEEecc--------------ccCceeEEEecCCCCEEEEEeCCCcEEEEEc
Q 019405 271 FNIYIGN-GSGDLASVDIRTGKLLGCFIGK--------------CSGSIRSIARHPTLPIIASCGLDSYLRFWDI 330 (341)
Q Consensus 271 ~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~--------------~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~ 330 (341)
.++++-. .++.|+.||+.+++.. .+.++ .-.....+++++++.++++-..++.|+.+++
T Consensus 335 ~lyvad~~~~~~I~~~~~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 335 NFYIVDGFKGYCLRKLDILDGYVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp CEEEEETTTTCEEEEEETTTTEEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CEEEEeCCCCCEEEEEECCCCEEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 9777777 7889999998888754 33322 0135789999999888888888888888775
No 207
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.41 E-value=1e-09 Score=93.19 Aligned_cols=277 Identities=12% Similarity=0.118 Sum_probs=165.1
Q ss_pred CceeeeecCCCCeEEEEEecCccCccceeeeccCC-------CCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCc
Q 019405 14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDP-------HSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD 86 (341)
Q Consensus 14 ~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~-------~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 86 (341)
.-+++.++.+|.+..++..+. .-.|+. ..... ...+. .....+ +..+++++.++.|..+|.++|+
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG-~~~W~~--~~~~~~~~~~~~~~~~~-~~~~~~----~~~v~v~~~~g~l~a~d~~tG~ 124 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDG-KEIWSV--SLAEKDGWFSKEPALLS-GGVTVS----GGHVYIGSEKAQVYALNTSDGT 124 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTC-CEEEEE--ECCC---CCSCCCCCEE-EEEEEE----TTEEEEEETTSEEEEEETTTCC
T ss_pred CCEEEEEcCCCeEEEEEccCC-ceeeee--cCccccccccccCcccc-cCceEe----CCEEEEEcCCCEEEEEECCCCC
Confidence 356777788888877776654 111211 12111 11111 111222 2358888889999999999999
Q ss_pred chheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceE
Q 019405 87 LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIA 166 (341)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~ 166 (341)
.+........ +....... ++ .++.++.++.+..++....+ .+|.......+.
T Consensus 125 ~~W~~~~~~~---------~~~~p~~~-~~--------~v~v~~~~g~l~~~d~~tG~----------~~W~~~~~~~~~ 176 (376)
T 3q7m_A 125 VAWQTKVAGE---------ALSRPVVS-DG--------LVLIHTSNGQLQALNEADGA----------VKWTVNLDMPSL 176 (376)
T ss_dssp EEEEEECSSC---------CCSCCEEE-TT--------EEEEECTTSEEEEEETTTCC----------EEEEEECCC---
T ss_pred EEEEEeCCCc---------eEcCCEEE-CC--------EEEEEcCCCeEEEEECCCCc----------EEEEEeCCCCce
Confidence 8776654211 11111111 22 77778888888888864332 234443332221
Q ss_pred ------EEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCcc-CccCCeee-eEEEEEecCCCCEEEEEeCCCe
Q 019405 167 ------FSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSL-GIFTPTWF-TSAAFLSIDDHRKFVAGTNDHQ 238 (341)
Q Consensus 167 ------~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~v-~~~~~~~~~~~~~l~~~~~d~~ 238 (341)
.... .+..++.++.++.|..+|..+++.++.......... .......+ ..... .+..++.++.++.
T Consensus 177 ~~~~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~----~~~~v~~~~~~g~ 250 (376)
T 3q7m_A 177 SLRGESAPTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV----VNGVVFALAYNGN 250 (376)
T ss_dssp --CCCCCCEE--ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE----ETTEEEEECTTSC
T ss_pred eecCCCCcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE----ECCEEEEEecCcE
Confidence 1111 245678888899999999999999887654321100 00000000 11112 3467788888999
Q ss_pred EEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEE
Q 019405 239 VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIAS 318 (341)
Q Consensus 239 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 318 (341)
+..+|..+++. +.... ......+.. ++..+++++.++.|..+|..+++.+..........+..... .+..|+.
T Consensus 251 l~~~d~~tG~~-~w~~~--~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v 323 (376)
T 3q7m_A 251 LTALDLRSGQI-MWKRE--LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVV 323 (376)
T ss_dssp EEEEETTTCCE-EEEEC--CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEE
T ss_pred EEEEECCCCcE-Eeecc--CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEE
Confidence 99999998764 33332 233444444 35578888889999999999999887765321223333333 3567888
Q ss_pred EeCCCcEEEEEcCCCceeeee
Q 019405 319 CGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 319 ~~~dg~v~iwd~~~~~~~~~~ 339 (341)
++.+|.|..+|.++|+.+.+.
T Consensus 324 ~~~~g~l~~~d~~tG~~~~~~ 344 (376)
T 3q7m_A 324 GDSEGYLHWINVEDGRFVAQQ 344 (376)
T ss_dssp ECTTSEEEEEETTTCCEEEEE
T ss_pred EeCCCeEEEEECCCCcEEEEE
Confidence 889999999999999987654
No 208
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.41 E-value=3.9e-11 Score=110.36 Aligned_cols=160 Identities=10% Similarity=-0.070 Sum_probs=108.9
Q ss_pred EEEEecCCCCEEEEeeCCCe-------------EEEEECCCCce--eeecCCCCCCccCccCCeeeeEEEEEecCCCCEE
Q 019405 166 AFSKVDISEKFSLFGGKGVE-------------VNVWDLDKCEK--IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF 230 (341)
Q Consensus 166 ~~~~~~~~~~~l~~~~~d~~-------------v~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 230 (341)
..++|+||++.|+.++.+.. |++|++.+++. ...+.... ++..+..+.| +|++++|
T Consensus 171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~-------~~~~~~~~~~--SpDG~~l 241 (695)
T 2bkl_A 171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTG-------DPTTFLQSDL--SRDGKYL 241 (695)
T ss_dssp CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCC-------CTTCEEEEEE--CTTSCCE
T ss_pred cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCC-------CCEEEEEEEE--CCCCCEE
Confidence 57899999999999888765 99999988762 12222211 1245778889 9999999
Q ss_pred EEEeCCC----eEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEe---CCCCEEEEECCCCeE--EeEEeccc-
Q 019405 231 VAGTNDH----QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN---GSGDLASVDIRTGKL--LGCFIGKC- 300 (341)
Q Consensus 231 ~~~~~d~----~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~---~dg~i~iwd~~~~~~--~~~~~~~~- 300 (341)
+..+.++ .|++|+..+++ ...+..+...+....+ ++|.+++.+. .++.|.+||+.+++. ...+..++
T Consensus 242 ~~~~~~~~~~~~l~~~~~~~~~--~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~ 318 (695)
T 2bkl_A 242 FVYILRGWSENDVYWKRPGEKD--FRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDS 318 (695)
T ss_dssp EEEEEETTTEEEEEEECTTCSS--CEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCS
T ss_pred EEEEeCCCCceEEEEEcCCCCc--eEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCC
Confidence 8877666 67777654433 5566666666677767 5666444443 257899999987653 22333332
Q ss_pred cCceeEEEecCCCCEEEEEeCCCcEEEEEcC-CCceeee
Q 019405 301 SGSIRSIARHPTLPIIASCGLDSYLRFWDIK-TRQLLSA 338 (341)
Q Consensus 301 ~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~-~~~~~~~ 338 (341)
...+..++|+ ++.++++...|+..++|.+. +++.+..
T Consensus 319 ~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~ 356 (695)
T 2bkl_A 319 SASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRT 356 (695)
T ss_dssp SCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEE
T ss_pred CCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEE
Confidence 4568888998 67788899999988888665 3554443
No 209
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.40 E-value=1.1e-09 Score=89.82 Aligned_cols=193 Identities=13% Similarity=0.066 Sum_probs=128.1
Q ss_pred eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCC
Q 019405 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP 204 (341)
Q Consensus 125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~ 204 (341)
.+++...++.+..|+... +.+..+.. ...+.+++++++++++++ . ++.|.+||.++++.........
T Consensus 27 l~~~d~~~~~i~~~d~~~---------~~~~~~~~--~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~ 93 (297)
T 3g4e_A 27 LLFVDIPAKKVCRWDSFT---------KQVQRVTM--DAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDN 93 (297)
T ss_dssp EEEEETTTTEEEEEETTT---------CCEEEEEC--SSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCT
T ss_pred EEEEECCCCEEEEEECCC---------CcEEEEeC--CCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCC
Confidence 566666778888888642 23344443 467899999999996554 3 5689999998776543222211
Q ss_pred CCccCccCCeeeeEEEEEecCCCCEEEEEeCC---------CeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEE
Q 019405 205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND---------HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYI 275 (341)
Q Consensus 205 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 275 (341)
.. ....++.+++ +++++++++...+ ..-.+|.+..... +..+..+......++|+|+++.|+.
T Consensus 94 ~~-----~~~~~~di~~--d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~~~~~~~~pngi~~spdg~~lyv 165 (297)
T 3g4e_A 94 DK-----KNNRFNDGKV--DPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH-VKKYFDQVDISNGLDWSLDHKIFYY 165 (297)
T ss_dssp TC-----SSEEEEEEEE--CTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC-EEEEEEEESBEEEEEECTTSCEEEE
T ss_pred CC-----CCCCCCCEEE--CCCCCEEEecCCcccccccccCCCcEEEEEECCCC-EEEEeeccccccceEEcCCCCEEEE
Confidence 10 1245788999 8899876654322 2335555543222 3333334345688999999987654
Q ss_pred -EeCCCCEEEEEC--CCCeE-----EeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 276 -GNGSGDLASVDI--RTGKL-----LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 276 -g~~dg~i~iwd~--~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
.+.++.|.+||+ .+++. ...+... ......++++++|++.++...++.|..||.++|+.+..+
T Consensus 166 ~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~-~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i 236 (297)
T 3g4e_A 166 IDSLSYSVDAFDYDLQTGQISNRRSVYKLEKE-EQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTV 236 (297)
T ss_dssp EEGGGTEEEEEEECTTTCCEEEEEEEEECCGG-GCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEE
T ss_pred ecCCCCcEEEEeccCCCCcccCcEEEEECCCC-CCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEE
Confidence 455788999987 45543 2222222 456789999999988888877889999999999887765
No 210
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.40 E-value=8.7e-11 Score=94.88 Aligned_cols=187 Identities=7% Similarity=-0.090 Sum_probs=125.3
Q ss_pred eeE-EEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCC
Q 019405 125 TLL-TCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP 203 (341)
Q Consensus 125 ~l~-~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~ 203 (341)
.++ +...++.+.+|+.... ....+.......+..++++++++++++.. ++.|.+||....... .+...
T Consensus 37 l~v~~~~~~~~i~~~~~~~~---------~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~~~~ 105 (270)
T 1rwi_B 37 VYVTSEGMYGRVVKLATGST---------GTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VLPFD 105 (270)
T ss_dssp EEEEECSSSCEEEEECC--------------EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-ECCCC
T ss_pred EEEEccCCCCcEEEecCCCc---------ccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-eeecC
Confidence 444 3366788888875321 11222222224577899999998666655 889999998765432 22211
Q ss_pred CCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEE
Q 019405 204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLA 283 (341)
Q Consensus 204 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~ 283 (341)
. ...+..+++ .++++++++...++.|.+|+..+... ..........+..++++++|+++++...++.|.
T Consensus 106 ~--------~~~p~~i~~--~~~g~l~v~~~~~~~i~~~~~~~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~ 174 (270)
T 1rwi_B 106 G--------LNYPEGLAV--DTQGAVYVADRGNNRVVKLAAGSKTQ-TVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVV 174 (270)
T ss_dssp S--------CSSEEEEEE--CTTCCEEEEEGGGTEEEEECTTCCSC-EECCCCSCCSCCCEEECTTCCEEEEEGGGTEEE
T ss_pred C--------cCCCcceEE--CCCCCEEEEECCCCEEEEEECCCcee-EeeccccCCCceeEEEeCCCCEEEEECCCCEEE
Confidence 1 134788899 78888887777788999997655332 211122234578899999998777777788999
Q ss_pred EEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCc
Q 019405 284 SVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ 334 (341)
Q Consensus 284 iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 334 (341)
+||............+ ...+..++++++|.++++...++.|.+||.....
T Consensus 175 ~~~~~~~~~~~~~~~~-~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~ 224 (270)
T 1rwi_B 175 KLEAESNNQVVLPFTD-ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT 224 (270)
T ss_dssp EECTTTCCEEECCCSS-CCSEEEEEECTTCCEEEEETTTSCEEEECTTCSC
T ss_pred EEecCCCceEeecccC-CCCceEEEECCCCCEEEEECCCCcEEEEcCCCCc
Confidence 9998876654333332 3678899999999888887788899999987644
No 211
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.39 E-value=4e-13 Score=113.75 Aligned_cols=223 Identities=14% Similarity=0.145 Sum_probs=119.1
Q ss_pred CceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecc
Q 019405 65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK 144 (341)
Q Consensus 65 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~ 144 (341)
+..+++++.||.|+.||..+|+.+..+.. . .+.+......+. .+++++.||.+..|+...++
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~---------~~~s~p~~~~g~--------~~v~~s~dg~l~a~d~~tG~ 70 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE-D---------PVLQVPTHVEEP--------AFLPDPNDGSLYTLGSKNNE 70 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEEC-C---------CSCCCC-----C--------CEEECTTTCCEEEC-----C
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEecC-C---------CceecceEcCCC--------EEEEeCCCCEEEEEECCCCc
Confidence 44799999999999999999998877765 1 122222222222 66667889999999875443
Q ss_pred cccccCCceEEEEEeecCCceEE-EEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEe
Q 019405 145 VSAESSCSTVKSWNVCASGTIAF-SKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS 223 (341)
Q Consensus 145 ~~~~~~~~~v~~~~~~~~~~i~~-~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 223 (341)
.+..|.......+.+ ..+. ++..+++++.++.|+.||.++|+.++.+..+. ...+
T Consensus 71 --------~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~-------------~~~~-- 126 (369)
T 2hz6_A 71 --------GLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF-------------ADSL-- 126 (369)
T ss_dssp --------CSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC-------------------------------
T ss_pred --------eeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC-------------cccc--
Confidence 222332211111100 0111 34567888889999999999999988776532 1233
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCC---ceEEEEeCCCCEEEEECCCCeEEeEEeccc
Q 019405 224 IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS---FNIYIGNGSGDLASVDIRTGKLLGCFIGKC 300 (341)
Q Consensus 224 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~ 300 (341)
.|++..+++++.|+.|+.||.++++. +..+..+. .....+.++. ..+++++.+|.|+.||.++|+.+.++..
T Consensus 127 ~p~~~~v~~~~~dg~v~a~d~~tG~~-~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-- 201 (369)
T 2hz6_A 127 SPSTSLLYLGRTEYTITMYDTKTREL-RWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY-- 201 (369)
T ss_dssp ------EEEEEEEEEEECCCSSSSSC-CCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC--
T ss_pred cccCCEEEEEecCCEEEEEECCCCCE-EEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC--
Confidence 45778899999999999999998774 43333221 1223333332 4677889999999999999999887764
Q ss_pred cCceeE-EEecCCCCEEEE--EeCCCcEEEEEcCCCc
Q 019405 301 SGSIRS-IARHPTLPIIAS--CGLDSYLRFWDIKTRQ 334 (341)
Q Consensus 301 ~~~i~~-~~~~~~~~~l~s--~~~dg~v~iwd~~~~~ 334 (341)
..++.. ..+++++...+. ...++.++.+|..+|+
T Consensus 202 ~~pv~~~~~~~~dg~~~v~~~~~~~~~l~~ld~~tG~ 238 (369)
T 2hz6_A 202 ASPVVAFYVWQREGLRKVMHINVAVETLRYLTFMSGE 238 (369)
T ss_dssp SSCEEEEEECTTSSCEEECCEEEEHHHHHHHHHHHHH
T ss_pred CCceEEEEEecCCceEeccceeecccceeeeehhcCC
Confidence 344443 445566643210 0013345555555544
No 212
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.38 E-value=4.6e-10 Score=92.08 Aligned_cols=213 Identities=12% Similarity=0.004 Sum_probs=132.6
Q ss_pred ceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeeccc
Q 019405 66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV 145 (341)
Q Consensus 66 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~ 145 (341)
.++++...++.|..||..+++. ..+.. ...+.++.+. +++ .++.+. ++.+.+|+.+.
T Consensus 26 ~l~~~d~~~~~i~~~d~~~~~~-~~~~~---------~~~~~~i~~~-~dG--------~l~v~~-~~~l~~~d~~~--- 82 (297)
T 3g4e_A 26 SLLFVDIPAKKVCRWDSFTKQV-QRVTM---------DAPVSSVALR-QSG--------GYVATI-GTKFCALNWKE--- 82 (297)
T ss_dssp EEEEEETTTTEEEEEETTTCCE-EEEEC---------SSCEEEEEEB-TTS--------SEEEEE-TTEEEEEETTT---
T ss_pred EEEEEECCCCEEEEEECCCCcE-EEEeC---------CCceEEEEEC-CCC--------CEEEEE-CCeEEEEECCC---
Confidence 3677777889999999987654 22322 1445555543 333 444444 55677777532
Q ss_pred ccccCCceEEEEE-ee---cCCceEEEEecCCCCEEEEeeCC---------CeEEEEECCC-CceeeecCCCCCCccCcc
Q 019405 146 SAESSCSTVKSWN-VC---ASGTIAFSKVDISEKFSLFGGKG---------VEVNVWDLDK-CEKIWTAKPPPKNSLGIF 211 (341)
Q Consensus 146 ~~~~~~~~v~~~~-~~---~~~~i~~~~~~~~~~~l~~~~~d---------~~v~i~d~~~-~~~~~~~~~~~~~~~~~~ 211 (341)
+.+..+. .. ....+..++++|+|+++++.... ..-.+|.+.. ++.......
T Consensus 83 ------g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~--------- 147 (297)
T 3g4e_A 83 ------QSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQ--------- 147 (297)
T ss_dssp ------TEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEE---------
T ss_pred ------CcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeec---------
Confidence 2233222 11 12347789999999976654221 2234444432 322221111
Q ss_pred CCeeeeEEEEEecCCCCEEE-EEeCCCeEEEEEcC--CCCce-eEEE---EecCCCeEEEEEcCCCceEEEEeCCCCEEE
Q 019405 212 TPTWFTSAAFLSIDDHRKFV-AGTNDHQVRLYDTS--AQRRP-VMSF---DFRETPIKAVAEEPDSFNIYIGNGSGDLAS 284 (341)
Q Consensus 212 ~~~~v~~~~~~~~~~~~~l~-~~~~d~~i~iwd~~--~~~~~-~~~~---~~~~~~v~~~~~~~~~~~l~~g~~dg~i~i 284 (341)
....+.++| +|+++.|+ +.+.++.|.+||+. ++... ...+ ..+......++++++|++.++....+.|..
T Consensus 148 -~~~pngi~~--spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~ 224 (297)
T 3g4e_A 148 -VDISNGLDW--SLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIR 224 (297)
T ss_dssp -ESBEEEEEE--CTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEE
T ss_pred -cccccceEE--cCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEE
Confidence 123578899 88998664 55567899999974 33310 1112 223345788999999987777777888999
Q ss_pred EECCCCeEEeEEeccccCceeEEEec-CCCCEEEEEe
Q 019405 285 VDIRTGKLLGCFIGKCSGSIRSIARH-PTLPIIASCG 320 (341)
Q Consensus 285 wd~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~s~~ 320 (341)
||..+++.+..+..+ ...+++++|. |+++.|..++
T Consensus 225 ~d~~tG~~~~~i~~p-~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 225 LDPVTGKRLQTVKLP-VDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp ECTTTCCEEEEEECS-SSBEEEEEEESGGGCEEEEEE
T ss_pred EcCCCceEEEEEECC-CCCceEEEEeCCCCCEEEEEc
Confidence 999999999888876 6789999998 8887554443
No 213
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.37 E-value=3e-13 Score=114.52 Aligned_cols=186 Identities=11% Similarity=0.021 Sum_probs=106.8
Q ss_pred eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCC
Q 019405 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP 204 (341)
Q Consensus 125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~ 204 (341)
.+++++.+|.+..||...++ .+|.... +.+.+..+..++..+++++.|+.|+.||.++++.++....+.
T Consensus 11 ~v~~gs~dg~v~a~d~~tG~----------~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~ 79 (369)
T 2hz6_A 11 LLFVSTLDGSLHAVSKRTGS----------IKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTI 79 (369)
T ss_dssp EEEEEETTSEEEEEETTTCC----------EEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCH
T ss_pred EEEEEcCCCEEEEEECCCCC----------EEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccC
Confidence 78888999999999975433 3455544 445454555677788888899999999999998877665431
Q ss_pred CCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEE
Q 019405 205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLAS 284 (341)
Q Consensus 205 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~i 284 (341)
.. .+.+... ...+..+++++.|+.|+.||..+++. +..+..+. ...++|++..+++++.++.|+.
T Consensus 80 ~~--------~~~~sp~--~~~~~~v~~g~~dg~v~a~D~~tG~~-~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a 144 (369)
T 2hz6_A 80 PE--------LVQASPC--RSSDGILYMGKKQDIWYVIDLLTGEK-QQTLSSAF----ADSLSPSTSLLYLGRTEYTITM 144 (369)
T ss_dssp HH--------HHTTCSC--C-----CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEEC
T ss_pred cc--------ccccCce--EecCCEEEEEeCCCEEEEEECCCCcE-EEEecCCC----cccccccCCEEEEEecCCEEEE
Confidence 10 0100000 11345677888899999999998875 55554432 2345678889999999999999
Q ss_pred EECCCCeEEeEEeccccCceeEEEecCCC---CEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 285 VDIRTGKLLGCFIGKCSGSIRSIARHPTL---PIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 285 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
||.++|+.+..+..+ . ....++.++. ..++.++.||.|+.||.++|+.+.+.
T Consensus 145 ~d~~tG~~~W~~~~~-~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~ 199 (369)
T 2hz6_A 145 YDTKTRELRWNATYF-D--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQ 199 (369)
T ss_dssp CCSSSSSCCCEEEEE-E--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEE
T ss_pred EECCCCCEEEeEecc-c--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEe
Confidence 999999887766533 1 2333444432 46777889999999999999987653
No 214
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.34 E-value=2.6e-10 Score=104.69 Aligned_cols=240 Identities=10% Similarity=0.034 Sum_probs=141.5
Q ss_pred ceeEEEeccCCCCCceEEEE-----ccCCeEEEeeCCCCcchhe-eeccCCCCCCCCCCceeeEeeeeccccccccccce
Q 019405 52 NCVLAASIDDSQNDPLLAVA-----RKNGLTDILNPLNGDLRVA-ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT 125 (341)
Q Consensus 52 ~~~~~~s~~~~~~~~~l~~~-----~~dg~i~iw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (341)
+..++||+ +|++||.+ +.+..|++||+.+++.+.. +.. .....+.|. ..+ .
T Consensus 131 l~~~~~Sp----Dg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~----------~k~~~~~Ws-Dg~--------~ 187 (693)
T 3iuj_A 131 LDQLSFSR----DGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD----------VKFSGISWL-GNE--------G 187 (693)
T ss_dssp EEEEEECT----TSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE----------EESCCCEEE-TTT--------E
T ss_pred EEEEEECC----CCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC----------ceeccEEEe-CCC--------E
Confidence 33445554 45577743 3335799999999886443 111 001234444 333 5
Q ss_pred eEEEcccc-------------eeEEEEeeecccccccCCceEEEEEeec--CCceEEEEecCCCCEEEEeeC----CCeE
Q 019405 126 LLTCTTKG-------------KASMRSIEVTKVSAESSCSTVKSWNVCA--SGTIAFSKVDISEKFSLFGGK----GVEV 186 (341)
Q Consensus 126 l~~~~~~g-------------~~~i~~~~~~~~~~~~~~~~v~~~~~~~--~~~i~~~~~~~~~~~l~~~~~----d~~v 186 (341)
|+.++.+. .+.+|++.... .....++.... ......+.++||+++|+.... ++.|
T Consensus 188 l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~------~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i 261 (693)
T 3iuj_A 188 FFYSSYDKPDGSELSARTDQHKVYFHRLGTAQ------EDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRL 261 (693)
T ss_dssp EEEEESSCCC-------CCCCEEEEEETTSCG------GGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEE
T ss_pred EEEEEecCcccccccccCCCcEEEEEECCCCc------ccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEE
Confidence 55555442 36666654322 11234444322 334678899999998865432 3589
Q ss_pred EEEECCCCc-eeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEE-EEeCC---CeEEEEEcCCCCc-eeEEEEecCCC
Q 019405 187 NVWDLDKCE-KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV-AGTND---HQVRLYDTSAQRR-PVMSFDFRETP 260 (341)
Q Consensus 187 ~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-~~~~d---~~i~iwd~~~~~~-~~~~~~~~~~~ 260 (341)
+++|+.++. ....+..+. ...... + .+++..|+ ....+ +.|..+|+.++.. ..+.+..|...
T Consensus 262 ~~~d~~~~~~~~~~l~~~~---------~~~~~~-~--~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~ 329 (693)
T 3iuj_A 262 YVKDLSQENAPLLTVQGDL---------DADVSL-V--DNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQ 329 (693)
T ss_dssp EEEETTSTTCCCEEEECSS---------SSCEEE-E--EEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSS
T ss_pred EEEECCCCCCceEEEeCCC---------CceEEE-E--eccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCC
Confidence 999997763 233333222 112222 3 34455544 44333 6799999987542 13556667666
Q ss_pred eEEEEEcCCCceEEEEeCCC---CEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCC----CcEEEEEcCCC
Q 019405 261 IKAVAEEPDSFNIYIGNGSG---DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLD----SYLRFWDIKTR 333 (341)
Q Consensus 261 v~~~~~~~~~~~l~~g~~dg---~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d----g~v~iwd~~~~ 333 (341)
+. .|+++++.|+....++ .|++||+..+ ....+.....+.+..+.+++++..|+....+ +.|+.||+.++
T Consensus 330 ~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 330 VL--TVHSGSGYLFAEYMVDATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp CE--EEEEETTEEEEEEEETTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred EE--EEEEECCEEEEEEEECCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence 65 8899998887766544 6899998754 4444543324567788888888866555444 78999999877
Q ss_pred ce
Q 019405 334 QL 335 (341)
Q Consensus 334 ~~ 335 (341)
+.
T Consensus 407 ~~ 408 (693)
T 3iuj_A 407 AI 408 (693)
T ss_dssp CE
T ss_pred eE
Confidence 53
No 215
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.33 E-value=2.8e-09 Score=90.51 Aligned_cols=260 Identities=11% Similarity=0.052 Sum_probs=155.3
Q ss_pred ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (341)
Q Consensus 15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 94 (341)
-+++.++.+|.+..++..+. +..-++............. +..+++++.++.|..+|..+|+.+..+...
T Consensus 104 ~~v~v~~~~g~l~a~d~~tG-----~~~W~~~~~~~~~~~p~~~------~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~ 172 (376)
T 3q7m_A 104 GHVYIGSEKAQVYALNTSDG-----TVAWQTKVAGEALSRPVVS------DGLVLIHTSNGQLQALNEADGAVKWTVNLD 172 (376)
T ss_dssp TEEEEEETTSEEEEEETTTC-----CEEEEEECSSCCCSCCEEE------TTEEEEECTTSEEEEEETTTCCEEEEEECC
T ss_pred CEEEEEcCCCEEEEEECCCC-----CEEEEEeCCCceEcCCEEE------CCEEEEEcCCCeEEEEECCCCcEEEEEeCC
Confidence 45677777888877776654 3321221111111111111 235888899999999999999888776652
Q ss_pred CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCce-----E---
Q 019405 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTI-----A--- 166 (341)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i-----~--- 166 (341)
.+.... ........ . .+ .++.+..++.+..++..... .+|......+- .
T Consensus 173 ~~~~~~---~~~~~~~~-~-~~--------~v~~g~~~g~l~~~d~~tG~----------~~w~~~~~~~~~~~~~~~~~ 229 (376)
T 3q7m_A 173 MPSLSL---RGESAPTT-A-FG--------AAVVGGDNGRVSAVLMEQGQ----------MIWQQRISQATGSTEIDRLS 229 (376)
T ss_dssp C--------CCCCCCEE-E-TT--------EEEECCTTTEEEEEETTTCC----------EEEEEECCC-----------
T ss_pred CCceee---cCCCCcEE-E-CC--------EEEEEcCCCEEEEEECCCCc----------EEEEEecccCCCCccccccc
Confidence 111000 00000111 1 22 67777778888888764332 23433221110 0
Q ss_pred EEEecC--CCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEc
Q 019405 167 FSKVDI--SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDT 244 (341)
Q Consensus 167 ~~~~~~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~ 244 (341)
.+...| .+..++.++.++.+..+|.++++.++...... ...+.. ++..++.++.++.|..+|.
T Consensus 230 ~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~-----------~~~~~~----~~~~l~~~~~~g~l~~~d~ 294 (376)
T 3q7m_A 230 DVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGS-----------VNDFIV----DGNRIYLVDQNDRVMALTI 294 (376)
T ss_dssp CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCCC-----------EEEEEE----ETTEEEEEETTCCEEEEET
T ss_pred ccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCCC-----------CCCceE----ECCEEEEEcCCCeEEEEEC
Confidence 011111 24677778889999999999999888766422 333444 4667888888999999999
Q ss_pred CCCCceeEEEEe-cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeE-EEecCCCCEEEEEeCC
Q 019405 245 SAQRRPVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRS-IARHPTLPIIASCGLD 322 (341)
Q Consensus 245 ~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~s~~~d 322 (341)
.+++. +..... ....+..... .+..|++++.+|.|+++|..+++.+..+... ...+.. ... .+..|+.++.+
T Consensus 295 ~tG~~-~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~-~~~~~~~~~~--~~~~l~v~~~~ 368 (376)
T 3q7m_A 295 DGGVT-LWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVD-SSGFQTEPVA--ADGKLLIQAKD 368 (376)
T ss_dssp TTCCE-EEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECC-TTCBCSCCEE--ETTEEEEEBTT
T ss_pred CCCcE-EEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecC-CCcceeCCEE--ECCEEEEEeCC
Confidence 98774 433331 1222223333 2457888999999999999999998877653 333332 222 24577788899
Q ss_pred CcEEEEE
Q 019405 323 SYLRFWD 329 (341)
Q Consensus 323 g~v~iwd 329 (341)
|.|+.||
T Consensus 369 G~l~~~~ 375 (376)
T 3q7m_A 369 GTVYSIT 375 (376)
T ss_dssp SCEEEEE
T ss_pred CEEEEEe
Confidence 9999987
No 216
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.32 E-value=1.4e-09 Score=89.87 Aligned_cols=189 Identities=12% Similarity=0.071 Sum_probs=122.5
Q ss_pred EcccceeEEEEeeecccccccCCceEEEEEe----ecCCceEEEEecCC-CCEEEEeeCCCeEEEEECCCCceeee-cCC
Q 019405 129 CTTKGKASMRSIEVTKVSAESSCSTVKSWNV----CASGTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDKCEKIWT-AKP 202 (341)
Q Consensus 129 ~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~----~~~~~i~~~~~~~~-~~~l~~~~~d~~v~i~d~~~~~~~~~-~~~ 202 (341)
...++.+.+|+... +.+..+.. .....+..+.++++ ++++++.. .+.|.+||.. ++.... ...
T Consensus 42 ~~~~~~i~~~d~~~---------g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~ 110 (314)
T 1pjx_A 42 GKPAGEILRIDLKT---------GKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKD 110 (314)
T ss_dssp TEECCEEEEECTTT---------CCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBC
T ss_pred CCCCCEEEEEeCCC---------CcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEecc
Confidence 36678888887532 22333322 02356889999998 66555443 4479999988 665432 221
Q ss_pred CCCCccCccCCeeeeEEEEEecCCCCEEEEEeCC---------------CeEEEEEcCCCCceeEEEEecCCCeEEEEEc
Q 019405 203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND---------------HQVRLYDTSAQRRPVMSFDFRETPIKAVAEE 267 (341)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---------------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 267 (341)
.... ....+.++++ .++++++++...+ +.|..||.. ++ ...+..+......++++
T Consensus 111 ~~~~-----~~~~~~~i~~--d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~--~~~~~~~~~~~~~i~~~ 180 (314)
T 1pjx_A 111 SEGR-----RMQGCNDCAF--DYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ--MIQVDTAFQFPNGIAVR 180 (314)
T ss_dssp TTSC-----BCBCCCEEEE--CTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC--EEEEEEEESSEEEEEEE
T ss_pred CCCc-----cccCCcCEEE--CCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CC--EEEeccCCCCcceEEEe
Confidence 1110 1134778899 8889887776655 567777765 33 33333333456889999
Q ss_pred ----CCCceEEEE-eCCCCEEEEECC-CCeE-----EeEEecccc-CceeEEEecCCCCEEEEEeCCCcEEEEEcCCCce
Q 019405 268 ----PDSFNIYIG-NGSGDLASVDIR-TGKL-----LGCFIGKCS-GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL 335 (341)
Q Consensus 268 ----~~~~~l~~g-~~dg~i~iwd~~-~~~~-----~~~~~~~~~-~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 335 (341)
|+++.|+++ ..++.|.+||+. +++. ...+..+ . ..+..++++++|+++++...++.|.+||.++++.
T Consensus 181 ~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~ 259 (314)
T 1pjx_A 181 HMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGT-HEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQP 259 (314)
T ss_dssp ECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCC-SSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSC
T ss_pred cccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCC-CCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcE
Confidence 999766555 567899999986 4542 2223332 2 5678899999999888888889999999987776
Q ss_pred eeee
Q 019405 336 LSAV 339 (341)
Q Consensus 336 ~~~~ 339 (341)
+..+
T Consensus 260 ~~~~ 263 (314)
T 1pjx_A 260 KMRI 263 (314)
T ss_dssp SEEE
T ss_pred eEEE
Confidence 5543
No 217
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.32 E-value=4e-09 Score=87.70 Aligned_cols=218 Identities=9% Similarity=-0.077 Sum_probs=133.7
Q ss_pred EEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccce
Q 019405 55 LAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGK 134 (341)
Q Consensus 55 ~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 134 (341)
.+|+++. +.++++...++.|.+||..+++.. .+.. ...+.++.+.+. + .++.+..++
T Consensus 54 p~~~~~~---~~l~~~d~~~~~i~~~d~~~~~~~-~~~~---------~~~v~~i~~~~d-g--------~l~v~~~~g- 110 (326)
T 2ghs_A 54 PTFDPAS---GTAWWFNILERELHELHLASGRKT-VHAL---------PFMGSALAKISD-S--------KQLIASDDG- 110 (326)
T ss_dssp EEEETTT---TEEEEEEGGGTEEEEEETTTTEEE-EEEC---------SSCEEEEEEEET-T--------EEEEEETTE-
T ss_pred CeEeCCC---CEEEEEECCCCEEEEEECCCCcEE-EEEC---------CCcceEEEEeCC-C--------eEEEEECCC-
Confidence 3455432 236777778899999999876532 2221 134666665443 3 344444444
Q ss_pred eEEEEeeecccccccCCceEEEEE-eec---CCceEEEEecCCCCEEEEeeC------CCeEEEEECCCCceeeecCCCC
Q 019405 135 ASMRSIEVTKVSAESSCSTVKSWN-VCA---SGTIAFSKVDISEKFSLFGGK------GVEVNVWDLDKCEKIWTAKPPP 204 (341)
Q Consensus 135 ~~i~~~~~~~~~~~~~~~~v~~~~-~~~---~~~i~~~~~~~~~~~l~~~~~------d~~v~i~d~~~~~~~~~~~~~~ 204 (341)
+.+|+.... .+..+. ... ...+..+.++|+|+++++... .+.|..++ +++.......
T Consensus 111 l~~~d~~~g---------~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~-- 177 (326)
T 2ghs_A 111 LFLRDTATG---------VLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFAD-- 177 (326)
T ss_dssp EEEEETTTC---------CEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEE--
T ss_pred EEEEECCCC---------cEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCC--
Confidence 667765322 222221 111 135788999999987665432 24566666 4443221111
Q ss_pred CCccCccCCeeeeEEEEEecCCCCEEEEE-eCCCeEEEEEcC--CC-Cc-eeEEEE---ecCCCeEEEEEcCCCceEEEE
Q 019405 205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAG-TNDHQVRLYDTS--AQ-RR-PVMSFD---FRETPIKAVAEEPDSFNIYIG 276 (341)
Q Consensus 205 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~-~~d~~i~iwd~~--~~-~~-~~~~~~---~~~~~v~~~~~~~~~~~l~~g 276 (341)
......++| +++++.++.+ +.++.|.+||+. ++ .. ....+. ........++++++|.+.++.
T Consensus 178 --------~~~~~~i~~--s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~ 247 (326)
T 2ghs_A 178 --------ISIPNSICF--SPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNAR 247 (326)
T ss_dssp --------ESSEEEEEE--CTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEE
T ss_pred --------CcccCCeEE--cCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEE
Confidence 022567889 8899876554 457899999986 44 21 012222 123456789999999877777
Q ss_pred eCCCCEEEEECCCCeEEeEEeccccCceeEEEec-CCCCEEEEEe
Q 019405 277 NGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARH-PTLPIIASCG 320 (341)
Q Consensus 277 ~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~s~~ 320 (341)
..++.|..||. +++.+..+..+ ...+++++|. |++..|+.++
T Consensus 248 ~~~~~v~~~d~-~g~~~~~i~~~-~~~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 248 WGEGAVDRYDT-DGNHIARYEVP-GKQTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp ETTTEEEEECT-TCCEEEEEECS-CSBEEEEEEESTTSCEEEEEE
T ss_pred eCCCEEEEECC-CCCEEEEEECC-CCCcEEEEEecCCCCEEEEEe
Confidence 67788999998 67777777766 6679999998 8887665444
No 218
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.30 E-value=4.6e-09 Score=95.72 Aligned_cols=245 Identities=13% Similarity=0.100 Sum_probs=150.6
Q ss_pred eEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcc------cceeEEEEe
Q 019405 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT------KGKASMRSI 140 (341)
Q Consensus 67 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~g~~~i~~~ 140 (341)
.+++++.|+.|..+|..+|+.+..+....... ...+....... .+ .++.+.. +|.+..+|.
T Consensus 119 ~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~----~~~~~~~P~v~-~~--------~v~vg~~~~~~~~~g~v~a~D~ 185 (668)
T 1kv9_A 119 KVYVGTLDGRLIALDAKTGKAIWSQQTTDPAK----PYSITGAPRVV-KG--------KVIIGNGGAEYGVRGFVSAYDA 185 (668)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECSCTTS----SCBCCSCCEEE-TT--------EEEECCBCTTTCCBCEEEEEET
T ss_pred EEEEEcCCCEEEEEECCCCCEeeeeccCCCCC----cceecCCCEEE-CC--------EEEEeCCCCCcCCCCEEEEEEC
Confidence 68889999999999999999887776521100 00011100111 11 3444432 466766665
Q ss_pred eecccccccCCceEEEEEeec--------------------------------CCceEEEEecCCCCEEEEeeCCC----
Q 019405 141 EVTKVSAESSCSTVKSWNVCA--------------------------------SGTIAFSKVDISEKFSLFGGKGV---- 184 (341)
Q Consensus 141 ~~~~~~~~~~~~~v~~~~~~~--------------------------------~~~i~~~~~~~~~~~l~~~~~d~---- 184 (341)
...+. +|.... ......++++++..+++.++.++
T Consensus 186 ~tG~~----------~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~ 255 (668)
T 1kv9_A 186 DTGKL----------AWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWN 255 (668)
T ss_dssp TTCCE----------EEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred CCCcE----------EEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccc
Confidence 43331 222211 11112467888888888887765
Q ss_pred ---------------eEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCC---EEEEEeCCCeEEEEEcCC
Q 019405 185 ---------------EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR---KFVAGTNDHQVRLYDTSA 246 (341)
Q Consensus 185 ---------------~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~l~~~~~d~~i~iwd~~~ 246 (341)
.|..+|.++++.++.++...................+ ..+++ .++.++.+|.++++|..+
T Consensus 256 ~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~--~~~G~~~~~v~~~~~~G~l~~lD~~t 333 (668)
T 1kv9_A 256 REVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAEL--NIDGKPRKVLMQAPKNGFFYVLDRTN 333 (668)
T ss_dssp HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEE--EETTEEEEEEEECCTTSEEEEEETTT
T ss_pred cCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEe--ccCCcEEEEEEEECCCCEEEEEECCC
Confidence 4999999999999887653221111100111111122 12554 688899999999999999
Q ss_pred CCceeEEEEecC------------CCe------------------------EEEEEcCCCceEEEEe-------------
Q 019405 247 QRRPVMSFDFRE------------TPI------------------------KAVAEEPDSFNIYIGN------------- 277 (341)
Q Consensus 247 ~~~~~~~~~~~~------------~~v------------------------~~~~~~~~~~~l~~g~------------- 277 (341)
++. +....... .++ ..++++|+...+++..
T Consensus 334 G~~-l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~ 412 (668)
T 1kv9_A 334 GKL-ISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKD 412 (668)
T ss_dssp CCE-EEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGG
T ss_pred CCE-eccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccc
Confidence 874 42222111 000 1257777766655421
Q ss_pred -----------------------CCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCc
Q 019405 278 -----------------------GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ 334 (341)
Q Consensus 278 -----------------------~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 334 (341)
.+|.|..||+.+++.+.+...+ .+.....+...+.+++.++.|+.|+.||.++|+
T Consensus 413 ~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~--~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~ 490 (668)
T 1kv9_A 413 FVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP--THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGE 490 (668)
T ss_dssp CCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES--SSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred cccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC--CCCcCceeEeCCCEEEEECCcccchhhhhhcCh
Confidence 2378999999999998877643 344444555677888889999999999999999
Q ss_pred eeeee
Q 019405 335 LLSAV 339 (341)
Q Consensus 335 ~~~~~ 339 (341)
.+.++
T Consensus 491 ~l~~~ 495 (668)
T 1kv9_A 491 ALWQF 495 (668)
T ss_dssp EEEEE
T ss_pred hheEe
Confidence 98775
No 219
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.30 E-value=7.5e-10 Score=102.56 Aligned_cols=160 Identities=12% Similarity=0.024 Sum_probs=107.8
Q ss_pred EEEEecCCCCEEEEeeCCCe--------------EEEEECCCCce--eeecCCCCCCccCccCCeeeeEEEEEecCCCCE
Q 019405 166 AFSKVDISEKFSLFGGKGVE--------------VNVWDLDKCEK--IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRK 229 (341)
Q Consensus 166 ~~~~~~~~~~~l~~~~~d~~--------------v~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 229 (341)
..++|+|| +.|+.++.++. |++|++.+++. ...+.... ++..+..+.| +|+|++
T Consensus 212 ~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~-------~~~~~~~~~~--SpDG~~ 281 (741)
T 1yr2_A 212 SGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPE-------LPKRGHGASV--SSDGRW 281 (741)
T ss_dssp CCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTT-------CTTCEEEEEE--CTTSCE
T ss_pred ccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCC-------CCeEEEEEEE--CCCCCE
Confidence 46789999 98888776543 88999977652 12222211 1234778889 999999
Q ss_pred EEEEeCCC-----eEEEEEcCCCCce-eEEEEecCCCeEEEEEcCCCceEEEEeCC----CCEEEEECCCC--eEEeEEe
Q 019405 230 FVAGTNDH-----QVRLYDTSAQRRP-VMSFDFRETPIKAVAEEPDSFNIYIGNGS----GDLASVDIRTG--KLLGCFI 297 (341)
Q Consensus 230 l~~~~~d~-----~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~g~~d----g~i~iwd~~~~--~~~~~~~ 297 (341)
|+..+.++ .|++||+.++... ...+..+...+.... +|+|..|+..+.+ +.|.+||+.++ +....+.
T Consensus 282 l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~ 360 (741)
T 1yr2_A 282 VVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVP 360 (741)
T ss_dssp EEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEEC
T ss_pred EEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEec
Confidence 88877544 8999999876322 455665655555553 4888888777654 44999999874 3333343
Q ss_pred ccccCceeEEEecCCCCEEEEEeCCCcEEEEEcC-CCceeee
Q 019405 298 GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK-TRQLLSA 338 (341)
Q Consensus 298 ~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~-~~~~~~~ 338 (341)
.+ ...+..+.|+ ++.++++...|+..+||.+. +++.+..
T Consensus 361 ~~-~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~ 400 (741)
T 1yr2_A 361 ES-KDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGA 400 (741)
T ss_dssp CC-SSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEE
T ss_pred CC-CCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceee
Confidence 33 5667778887 56688888899987777554 3554443
No 220
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.29 E-value=1.1e-08 Score=85.03 Aligned_cols=189 Identities=8% Similarity=-0.045 Sum_probs=123.9
Q ss_pred eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCC
Q 019405 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP 204 (341)
Q Consensus 125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~ 204 (341)
.+++...++.+..|+... +.++.+.. ...+.++.++++++++++. . ..|.+||..+++.........
T Consensus 63 l~~~d~~~~~i~~~d~~~---------~~~~~~~~--~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~~~~~~~ 129 (326)
T 2ghs_A 63 AWWFNILERELHELHLAS---------GRKTVHAL--PFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTLHAELES 129 (326)
T ss_dssp EEEEEGGGTEEEEEETTT---------TEEEEEEC--SSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEEEECSST
T ss_pred EEEEECCCCEEEEEECCC---------CcEEEEEC--CCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEEEeeCCC
Confidence 566666778888887632 24445543 4578999999999877754 3 459999998876543222111
Q ss_pred CCccCccCCeeeeEEEEEecCCCCEEEEEeC------CCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEE-e
Q 019405 205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN------DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIG-N 277 (341)
Q Consensus 205 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g-~ 277 (341)
. .....+..+++ +++++++++... .+.|..++ +++ +..+..+......++|+|+++.|+.+ +
T Consensus 130 ~-----~~~~~~~~i~~--d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~--~~~~~~~~~~~~~i~~s~dg~~lyv~~~ 198 (326)
T 2ghs_A 130 D-----LPGNRSNDGRM--HPSGALWIGTMGRKAETGAGSIYHVA--KGK--VTKLFADISIPNSICFSPDGTTGYFVDT 198 (326)
T ss_dssp T-----CTTEEEEEEEE--CTTSCEEEEEEETTCCTTCEEEEEEE--TTE--EEEEEEEESSEEEEEECTTSCEEEEEET
T ss_pred C-----CCCCCCCCEEE--CCCCCEEEEeCCCcCCCCceEEEEEe--CCc--EEEeeCCCcccCCeEEcCCCCEEEEEEC
Confidence 0 01245888999 889987665442 24566666 333 33333333456789999999876554 4
Q ss_pred CCCCEEEEECC--CC-eE-----EeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 278 GSGDLASVDIR--TG-KL-----LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 278 ~dg~i~iwd~~--~~-~~-----~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
.++.|.+||+. ++ +. ...+... ......++++++|.++++...++.|.+||. +++.+..+
T Consensus 199 ~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~-~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i 266 (326)
T 2ghs_A 199 KVNRLMRVPLDARTGLPTGKAEVFIDSTGI-KGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARY 266 (326)
T ss_dssp TTCEEEEEEBCTTTCCBSSCCEEEEECTTS-SSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEE
T ss_pred CCCEEEEEEcccccCCcccCceEEEECCCC-CCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEE
Confidence 56889999986 55 32 2222222 345778999999988877767788999998 56665543
No 221
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.29 E-value=4.4e-09 Score=93.93 Aligned_cols=166 Identities=16% Similarity=0.144 Sum_probs=107.0
Q ss_pred EEecCCCCEEEEeeCC----------------CeEEEEECCCCceeeecCCCCCCccCcc-CCeeeeEEEEEecCCCC--
Q 019405 168 SKVDISEKFSLFGGKG----------------VEVNVWDLDKCEKIWTAKPPPKNSLGIF-TPTWFTSAAFLSIDDHR-- 228 (341)
Q Consensus 168 ~~~~~~~~~l~~~~~d----------------~~v~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~-- 228 (341)
++++++...++.+..+ +.|..+|.++++.++.++.......... ...++. +.. ..+++
T Consensus 240 ~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~--~~~G~~~ 316 (571)
T 2ad6_A 240 YAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQ--PVNGKMT 316 (571)
T ss_dssp CEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEE--EETTEEE
T ss_pred EEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-Eec--ccCCcEE
Confidence 4566666666665532 3699999999999988765322111000 001111 111 23563
Q ss_pred -EEEEEeCCCeEEEEEcCCCCceeEEEEecC-------------CCe--------------------------EEEEEcC
Q 019405 229 -KFVAGTNDHQVRLYDTSAQRRPVMSFDFRE-------------TPI--------------------------KAVAEEP 268 (341)
Q Consensus 229 -~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-------------~~v--------------------------~~~~~~~ 268 (341)
.++.++.+|.+.++|..+++. +....... .++ ..++++|
T Consensus 317 ~~v~~~~~~G~l~~lD~~tG~~-~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp 395 (571)
T 2ad6_A 317 PLLSHIDRNGILYTLNRENGNL-IVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDP 395 (571)
T ss_dssp EEEEEECTTSEEEEEETTTCCE-EEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET
T ss_pred EEEEEeCCCcEEEEEECCCCCE-EeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECC
Confidence 577888999999999998874 44433211 111 2357788
Q ss_pred CCceEEEEe-------------------------------------CCCCEEEEECCCCeEEeEEeccccCceeEEEecC
Q 019405 269 DSFNIYIGN-------------------------------------GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHP 311 (341)
Q Consensus 269 ~~~~l~~g~-------------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~ 311 (341)
+..++++.. .+|.|..||+.+++.+.++... ..+....+..
T Consensus 396 ~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~--~~~~~~~~~t 473 (571)
T 2ad6_A 396 ESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK--FAAWGGTLYT 473 (571)
T ss_dssp TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES--SCCCSBCEEE
T ss_pred CCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC--CCccceeEEE
Confidence 777776653 3478999999999998877643 3333333333
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 312 TLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 312 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
.+..++.++.|+.|+.+|.++|+.+.++
T Consensus 474 ~gg~v~~g~~dg~l~a~D~~tG~~lw~~ 501 (571)
T 2ad6_A 474 KGGLVWYATLDGYLKALDNKDGKELWNF 501 (571)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCCEEEEE
Confidence 5667777899999999999999998875
No 222
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.28 E-value=8.1e-10 Score=100.80 Aligned_cols=152 Identities=14% Similarity=0.046 Sum_probs=103.4
Q ss_pred CEEEEeeCCCeEEEEECCCCceeeecCCCCCCc---c------------------------CccCCeeeeEEEEEecCCC
Q 019405 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNS---L------------------------GIFTPTWFTSAAFLSIDDH 227 (341)
Q Consensus 175 ~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~---~------------------------~~~~~~~v~~~~~~~~~~~ 227 (341)
..++.++.+|.|+++|.++++.+..+....... . ......| ..++| +|+.
T Consensus 328 ~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w-~~~a~--dp~~ 404 (677)
T 1kb0_A 328 KVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNW-HPMSF--NPQT 404 (677)
T ss_dssp EEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCS-SCCEE--ETTT
T ss_pred eEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCC-CCceE--cCCC
Confidence 678899999999999999999987665322110 0 0000011 25677 7777
Q ss_pred CEEEEEeCC-------------------------------------------CeEEEEEcCCCCceeEEEEecCCCeEEE
Q 019405 228 RKFVAGTND-------------------------------------------HQVRLYDTSAQRRPVMSFDFRETPIKAV 264 (341)
Q Consensus 228 ~~l~~~~~d-------------------------------------------~~i~iwd~~~~~~~~~~~~~~~~~v~~~ 264 (341)
.++++...+ +.|..||+.+++. +-.+. +..++...
T Consensus 405 ~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~-~W~~~-~~~~~~~g 482 (677)
T 1kb0_A 405 GLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKA-AWSVE-HVSPWNGG 482 (677)
T ss_dssp TEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEE-EEEEE-ESSSCCCC
T ss_pred CEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcE-EeecC-CCCCCcCc
Confidence 787775432 7899999998774 54544 33445555
Q ss_pred EEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEE-eC----------------CCcEEE
Q 019405 265 AEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASC-GL----------------DSYLRF 327 (341)
Q Consensus 265 ~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~~----------------dg~v~i 327 (341)
.+...+.+++.++.||.+++||.++++.+.++.........-+.|.++|+.++.. +. .+.+..
T Consensus 483 ~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~ 562 (677)
T 1kb0_A 483 TLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYT 562 (677)
T ss_dssp EEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEE
T ss_pred ceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEE
Confidence 5667777888999999999999999999999986523333446677788744332 22 357777
Q ss_pred EEcC
Q 019405 328 WDIK 331 (341)
Q Consensus 328 wd~~ 331 (341)
|.+.
T Consensus 563 f~l~ 566 (677)
T 1kb0_A 563 FVVG 566 (677)
T ss_dssp EEET
T ss_pred Eecc
Confidence 8776
No 223
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.28 E-value=1.3e-09 Score=91.22 Aligned_cols=237 Identities=13% Similarity=0.053 Sum_probs=150.7
Q ss_pred CCCCceEEEEcc-----CCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEc------
Q 019405 62 SQNDPLLAVARK-----NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT------ 130 (341)
Q Consensus 62 ~~~~~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------ 130 (341)
.|++..+.+... ++.|.+.|..+++.+.++..- ..+ .+.+.+..+ .+.++.
T Consensus 41 ~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG--------~~P--~va~spDG~--------~lyVan~~~~r~ 102 (386)
T 3sjl_D 41 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG--------FLP--NPVVADDGS--------FIAHASTVFSRI 102 (386)
T ss_dssp CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC--------SSC--EEEECTTSS--------CEEEEEEEEEET
T ss_pred CCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECC--------CCC--cEEECCCCC--------EEEEEccccccc
Confidence 355557777654 689999999999998888751 122 344444333 454443
Q ss_pred ----ccceeEEEEeeecccccccCCceEEEEEeec------CCceEEEEecCCCCEEEEeeC--CCeEEEEECCCCceee
Q 019405 131 ----TKGKASMRSIEVTKVSAESSCSTVKSWNVCA------SGTIAFSKVDISEKFSLFGGK--GVEVNVWDLDKCEKIW 198 (341)
Q Consensus 131 ----~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~------~~~i~~~~~~~~~~~l~~~~~--d~~v~i~d~~~~~~~~ 198 (341)
.++.+.+||..... .+..+.+.. +..-..+.++|||++++++.. ++.|.++|+.+++.+.
T Consensus 103 ~~G~~~~~VsviD~~t~~--------v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~ 174 (386)
T 3sjl_D 103 ARGERTDYVEVFDPVTLL--------PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKR 174 (386)
T ss_dssp TEEEEEEEEEEECTTTCC--------EEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEE
T ss_pred ccCCCCCEEEEEECCCCe--------EEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEE
Confidence 35778888875433 333333321 124557899999999888763 6899999999999988
Q ss_pred ecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEec----CCCeE-EEEEc-CCCce
Q 019405 199 TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR----ETPIK-AVAEE-PDSFN 272 (341)
Q Consensus 199 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----~~~v~-~~~~~-~~~~~ 272 (341)
.+.... . ...+ +.....+++.+.||.+.+.++............+ ..++. ...|. ++|++
T Consensus 175 tI~v~g-----------~-~~~~--P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~ 240 (386)
T 3sjl_D 175 MLDVPD-----------C-YHIF--PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRL 240 (386)
T ss_dssp EEECCS-----------E-EEEE--EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEE
T ss_pred EEECCC-----------c-ceee--cCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcE
Confidence 876532 1 1123 3345567788889999888887622222211111 12222 24554 67766
Q ss_pred EEEEeCCCCEEEEECCCCe--EEeEEe---------ccccCceeEEEecCCCCEEEEEeC----------CCcEEEEEcC
Q 019405 273 IYIGNGSGDLASVDIRTGK--LLGCFI---------GKCSGSIRSIARHPTLPIIASCGL----------DSYLRFWDIK 331 (341)
Q Consensus 273 l~~g~~dg~i~iwd~~~~~--~~~~~~---------~~~~~~i~~~~~~~~~~~l~s~~~----------dg~v~iwd~~ 331 (341)
++ .+.+|.|++.|+.+.. .+..+. +-.......++++++++.+..... .+.|.+.|++
T Consensus 241 ~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~ 319 (386)
T 3sjl_D 241 VW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAK 319 (386)
T ss_dssp EE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETT
T ss_pred EE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECC
Confidence 65 4558999999997653 333332 111234456888999987766542 2579999999
Q ss_pred CCceeeee
Q 019405 332 TRQLLSAV 339 (341)
Q Consensus 332 ~~~~~~~~ 339 (341)
+++.+.++
T Consensus 320 t~kv~~~i 327 (386)
T 3sjl_D 320 TGERLAKF 327 (386)
T ss_dssp TCCEEEEE
T ss_pred CCeEEEEE
Confidence 99998876
No 224
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.26 E-value=3.3e-09 Score=88.88 Aligned_cols=275 Identities=12% Similarity=-0.036 Sum_probs=161.6
Q ss_pred ceeeeecC-CC----CeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEc----------cCCeEEE
Q 019405 15 LRALTFDS-LG----LIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR----------KNGLTDI 79 (341)
Q Consensus 15 ~~~~~~~~-~g----~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~----------~dg~i~i 79 (341)
.+++...+ ++ .+.+++.... +++.++.-...+ .+++++|++ +++++. .++.|.+
T Consensus 32 ~~~yV~~~~~~~~~d~vsvID~~t~-----~v~~~i~vG~~P--~i~~spDg~----~lyVan~~~~r~~~G~~~~~Vsv 100 (368)
T 1mda_H 32 RRSHITLPAYFAGTTENWVSCAGCG-----VTLGHSLGAFLS--LAVAGHSGS----DFALASTSFARSAKGKRTDYVEV 100 (368)
T ss_dssp TEEEEEECTTTCSSEEEEEEETTTT-----EEEEEEEECTTC--EEEECTTSS----CEEEEEEEETTTTSSSEEEEEEE
T ss_pred CeEEEECCccCCccceEEEEECCCC-----eEEEEEeCCCCC--ceEECCCCC----EEEEEcccccccccCCCCCEEEE
Confidence 44554444 33 5557776655 676676544444 688888877 677765 4789999
Q ss_pred eeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcc--cceeEE--EEeeecccccccCCceEE
Q 019405 80 LNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT--KGKASM--RSIEVTKVSAESSCSTVK 155 (341)
Q Consensus 80 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~g~~~i--~~~~~~~~~~~~~~~~v~ 155 (341)
||+.+++.+.++.......+. .......+.+.+..+ .++++.. +..+.+ +|+.. +.
T Consensus 101 iD~~T~~vv~~I~v~~~~~~~-~g~~P~~ia~SpDGk--------~lyVan~~~~~~v~V~~iD~~t-----------v~ 160 (368)
T 1mda_H 101 FDPVTFLPIADIELPDAPRFS-VGPRVHIIGNCASSA--------CLLFFLFGSSAAAGLSVPGASD-----------DQ 160 (368)
T ss_dssp ECTTTCCEEEEEEETTSCSCC-BSCCTTSEEECTTSS--------CEEEEECSSSCEEEEEETTTEE-----------EE
T ss_pred EECCCCCEEEEEECCCccccc-cCCCcceEEEcCCCC--------EEEEEccCCCCeEEEEEEchhh-----------ce
Confidence 999999998888652100000 001122344433333 5555543 356767 66542 22
Q ss_pred EEEeecCCceEEEEecCCC-CEEEEeeCCCeEEEEECCC-----CceeeecCCCCCCccCccCCeeeeEEEEEecCCCCE
Q 019405 156 SWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDK-----CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRK 229 (341)
Q Consensus 156 ~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~i~d~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 229 (341)
.... .+. ..+.|++ ..+++.+.|+.+.+.|+++ ++...... . ..... ..+. .+ +++..
T Consensus 161 ~i~v--~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t--~--~i~vg-~~P~---~~---~~~~~ 224 (368)
T 1mda_H 161 LTKS--ASC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCT--G--AQNCS-SQAA---QA---NYPGM 224 (368)
T ss_dssp EEEC--SSC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSC--T--TSCBC-SCCE---EE---TTTTE
T ss_pred EEEC--CCc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEee--e--eeeCC-CCcc---cc---ccCCE
Confidence 2222 111 1123433 3445566788888888876 33322110 0 00010 1122 23 34455
Q ss_pred EEEEeCCCeEEEEEcCCCCce-eEEEEec----------CCCeEEEEEcCCCceEEEEeC---------CCCEEEEECCC
Q 019405 230 FVAGTNDHQVRLYDTSAQRRP-VMSFDFR----------ETPIKAVAEEPDSFNIYIGNG---------SGDLASVDIRT 289 (341)
Q Consensus 230 l~~~~~d~~i~iwd~~~~~~~-~~~~~~~----------~~~v~~~~~~~~~~~l~~g~~---------dg~i~iwd~~~ 289 (341)
++..+. +.|.+.|....... +..+... ......++++|+++.++++.. ++.+.++|+.+
T Consensus 225 ~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t 303 (368)
T 1mda_H 225 LVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV 303 (368)
T ss_dssp EEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS
T ss_pred EEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCC
Confidence 555555 89999998653211 1111100 011122689999988887643 23566999999
Q ss_pred CeEEeEEeccccCceeEEEecCCCC-EEEEEe-CCCcEEEEEcCCCceeeee
Q 019405 290 GKLLGCFIGKCSGSIRSIARHPTLP-IIASCG-LDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 290 ~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~-~dg~v~iwd~~~~~~~~~~ 339 (341)
++.+..+... .....++|+|||+ .+++.. .++.|.++|+.+++.+.++
T Consensus 304 ~~vv~~i~vg--~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I 353 (368)
T 1mda_H 304 GQTSGPISNG--HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSV 353 (368)
T ss_dssp CCEEECCEEE--EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEEC
T ss_pred CeEEEEEECC--CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEE
Confidence 9999988764 3688999999998 566666 5999999999999999876
No 225
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.25 E-value=3.9e-08 Score=83.14 Aligned_cols=234 Identities=9% Similarity=-0.100 Sum_probs=142.2
Q ss_pred CCCceEEEEcc--CC---eEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEc-------
Q 019405 63 QNDPLLAVARK--NG---LTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT------- 130 (341)
Q Consensus 63 ~~~~~l~~~~~--dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------- 130 (341)
|++.++.+... .. +|.++|..+++.+.++..- ..+ .+.+.+..+ .+..+.
T Consensus 30 ~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g--------~~p--~i~~spDg~--------~lyv~n~~~~~~~ 91 (373)
T 2mad_H 30 ADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG--------FLP--NPVAAHSGS--------EFALASTSFSRIA 91 (373)
T ss_pred CCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCC--------CCC--CeEECCCCC--------EEEEEeccccccc
Confidence 33445555543 22 8999999998877665541 122 455555444 555543
Q ss_pred ---ccceeEEEEeeecccccccCCceEEEEEee------cCCceEEEEecCCCCEEEEeeC--CCeEEEEECCCCceeee
Q 019405 131 ---TKGKASMRSIEVTKVSAESSCSTVKSWNVC------ASGTIAFSKVDISEKFSLFGGK--GVEVNVWDLDKCEKIWT 199 (341)
Q Consensus 131 ---~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~------~~~~i~~~~~~~~~~~l~~~~~--d~~v~i~d~~~~~~~~~ 199 (341)
.++.+.++|..... .+..+... ....-..+.++|||++|+++.. ++.|.++| .+++.+..
T Consensus 92 rg~~~~~v~viD~~t~~--------~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~ 162 (373)
T 2mad_H 92 KGKRTDYVEVFDPVTFL--------PIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQ 162 (373)
T ss_pred cCCCCCeEEEEECCCCc--------EEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeE
Confidence 35778888875332 22222221 0123457899999999998864 57899999 99988777
Q ss_pred -cCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEE-----ecCCCe-EEEEEcCCCce
Q 019405 200 -AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD-----FRETPI-KAVAEEPDSFN 272 (341)
Q Consensus 200 -~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-----~~~~~v-~~~~~~~~~~~ 272 (341)
+.... ++.+. ......+++.+.||.+.++|. +++. +.... ....++ ....+.+++..
T Consensus 163 ~i~~~~-------------~~~~~-~~~~~~~~~~~~dg~~~~vd~-~g~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 226 (373)
T 2mad_H 163 LLSSPT-------------CYHIH-PGAPSTFYLLCAQGGLAKTDH-AGGA-AGAGLVGAMLTAAQNLLTQPAQANKSGR 226 (373)
T ss_pred EcCCCc-------------eEEEE-eCCCceEEEEcCCCCEEEEEC-CCcE-EEEEeccccccCCcceeecceeEecCCE
Confidence 55422 12332 223345667778999999999 6553 32211 112222 23456666555
Q ss_pred EEEEeCCCCEEEEECCCCe--EEeEEecc---------ccCceeEEEecCCCCEEEEEeC----------CCcEEEEEcC
Q 019405 273 IYIGNGSGDLASVDIRTGK--LLGCFIGK---------CSGSIRSIARHPTLPIIASCGL----------DSYLRFWDIK 331 (341)
Q Consensus 273 l~~g~~dg~i~iwd~~~~~--~~~~~~~~---------~~~~i~~~~~~~~~~~l~s~~~----------dg~v~iwd~~ 331 (341)
++..+.++.+.+.|+.... .+..+... .......++++|+++.+..+.. ++.|.++|+.
T Consensus 227 ~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~ 306 (373)
T 2mad_H 227 IVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGL 306 (373)
T ss_pred EEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECC
Confidence 4444578899999997552 23333210 0122444789999987766543 3579999999
Q ss_pred CCceeeee
Q 019405 332 TRQLLSAV 339 (341)
Q Consensus 332 ~~~~~~~~ 339 (341)
+++.+.++
T Consensus 307 t~~vv~~i 314 (373)
T 2mad_H 307 VGQTSSQI 314 (373)
T ss_pred CCEEEEEE
Confidence 99988776
No 226
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.25 E-value=1.5e-08 Score=83.39 Aligned_cols=221 Identities=11% Similarity=0.013 Sum_probs=135.2
Q ss_pred eeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEc-c
Q 019405 53 CVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT-T 131 (341)
Q Consensus 53 ~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~ 131 (341)
...+|++++. .+++++..++.|..|+. +++. ..+... ...+..+.+ ..++ .++++. .
T Consensus 48 egp~~~~~g~---~l~~~d~~~~~i~~~~~-~g~~-~~~~~~--------~~~~~gl~~-d~dG--------~l~v~~~~ 105 (305)
T 3dr2_A 48 EGPAWWEAQR---TLVWSDLVGRRVLGWRE-DGTV-DVLLDA--------TAFTNGNAV-DAQQ--------RLVHCEHG 105 (305)
T ss_dssp EEEEEEGGGT---EEEEEETTTTEEEEEET-TSCE-EEEEES--------CSCEEEEEE-CTTS--------CEEEEETT
T ss_pred cCCeEeCCCC---EEEEEECCCCEEEEEeC-CCCE-EEEeCC--------CCccceeeE-CCCC--------CEEEEECC
Confidence 3455665543 15677778899999998 4542 333321 133444444 3333 444443 4
Q ss_pred cceeEEEEeeecccccccCCceEEEEEeec----CCceEEEEecCCCCEEEE----eeC-------------CCeEEEEE
Q 019405 132 KGKASMRSIEVTKVSAESSCSTVKSWNVCA----SGTIAFSKVDISEKFSLF----GGK-------------GVEVNVWD 190 (341)
Q Consensus 132 ~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~----~~~i~~~~~~~~~~~l~~----~~~-------------d~~v~i~d 190 (341)
++.+..|+.+ +.+..+.... ...+..+.++++|++.++ |.. .+.|..||
T Consensus 106 ~~~v~~~~~~----------g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d 175 (305)
T 3dr2_A 106 RRAITRSDAD----------GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLP 175 (305)
T ss_dssp TTEEEEECTT----------SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEEC
T ss_pred CCEEEEECCC----------CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEc
Confidence 4677777642 2222221111 134567899999998886 432 25688888
Q ss_pred CCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCC------CeEEEEEcCCCCce-eEEEE-ecCCCeE
Q 019405 191 LDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND------HQVRLYDTSAQRRP-VMSFD-FRETPIK 262 (341)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~-~~~~~-~~~~~v~ 262 (341)
..+++..... .. .....++| +|+++.|+.+... +.|.+|++...... ...+. .......
T Consensus 176 ~~~g~~~~~~-~~----------~~p~gl~~--spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pd 242 (305)
T 3dr2_A 176 PDGSPLQRMA-DL----------DHPNGLAF--SPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPD 242 (305)
T ss_dssp SSSCCCEEEE-EE----------SSEEEEEE--CTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCC
T ss_pred CCCCcEEEEe-cC----------CCCcceEE--cCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCC
Confidence 7666543322 11 22567899 8999987777665 78999998754310 11111 1223455
Q ss_pred EEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCC
Q 019405 263 AVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDS 323 (341)
Q Consensus 263 ~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg 323 (341)
.++++++|++ .++..+ .|.+|+. +++.+..+..+ . .+..++|.|+++.|..++.++
T Consensus 243 gi~~d~~G~l-wv~~~~-gv~~~~~-~g~~~~~~~~~-~-~~~~~~f~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 243 GFCVDRGGWL-WSSSGT-GVCVFDS-DGQLLGHIPTP-G-TASNCTFDQAQQRLFITGGPC 298 (305)
T ss_dssp SEEECTTSCE-EECCSS-EEEEECT-TSCEEEEEECS-S-CCCEEEECTTSCEEEEEETTE
T ss_pred eEEECCCCCE-EEecCC-cEEEECC-CCCEEEEEECC-C-ceeEEEEeCCCCEEEEEcCCe
Confidence 7899999984 444444 4999998 57777777765 3 588999999998888777664
No 227
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.24 E-value=2e-09 Score=98.38 Aligned_cols=79 Identities=9% Similarity=0.033 Sum_probs=57.9
Q ss_pred CCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCE
Q 019405 236 DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPI 315 (341)
Q Consensus 236 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 315 (341)
+|.|+.||+.+++. +-.+..+. +...-.+...+.+++.|+.||.++.||.++|+.+.+++........-+.|..+|+.
T Consensus 454 ~g~l~A~D~~tG~~-~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~q 531 (689)
T 1yiq_A 454 SGKLIAWDPVKQQA-AWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQ 531 (689)
T ss_dssp EEEEEEEETTTTEE-EEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred ceeEEEEECCCCCe-EeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEE
Confidence 37899999999875 55555443 34444556677789999999999999999999999988652222344677788874
Q ss_pred E
Q 019405 316 I 316 (341)
Q Consensus 316 l 316 (341)
+
T Consensus 532 y 532 (689)
T 1yiq_A 532 Y 532 (689)
T ss_dssp E
T ss_pred E
Confidence 3
No 228
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=99.22 E-value=4.6e-08 Score=87.43 Aligned_cols=168 Identities=15% Similarity=0.145 Sum_probs=105.6
Q ss_pred EEecCCCCEEEEeeCC----------------CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCC---C
Q 019405 168 SKVDISEKFSLFGGKG----------------VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH---R 228 (341)
Q Consensus 168 ~~~~~~~~~l~~~~~d----------------~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~ 228 (341)
.+++++..+++.+..+ +.|..+|.++++.++.++................-+... ..++ .
T Consensus 246 ~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~-~~~G~~~~ 324 (599)
T 1w6s_A 246 YAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQK-DKDGKARK 324 (599)
T ss_dssp CEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEE-CTTSCEEE
T ss_pred eeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEecc-ccCCcEEE
Confidence 4556677777776654 389999999999998877643221111000011111220 1456 4
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeEEEEecC-------------CCe--------------------------EEEEEcCC
Q 019405 229 KFVAGTNDHQVRLYDTSAQRRPVMSFDFRE-------------TPI--------------------------KAVAEEPD 269 (341)
Q Consensus 229 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-------------~~v--------------------------~~~~~~~~ 269 (341)
.++.++.+|.+.++|.++++. +....... .++ ..++++|+
T Consensus 325 ~v~~~~~~G~l~~lD~~tG~~-lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~ 403 (599)
T 1w6s_A 325 LLTHPDRNGIVYTLDRTDGAL-VSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPK 403 (599)
T ss_dssp EEEEECTTSEEEEEETTTCCE-EEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETT
T ss_pred EEEEECCCcEEEEEECCCCCE-eecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCC
Confidence 677788999999999998874 44333110 111 13566666
Q ss_pred CceEEEEe---------------------------------------CCCCEEEEECCCCeEEeEEeccccCceeEEEec
Q 019405 270 SFNIYIGN---------------------------------------GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARH 310 (341)
Q Consensus 270 ~~~l~~g~---------------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~ 310 (341)
..++++.. ..|.|..||+.+++.+.+.+.. .+...-...
T Consensus 404 ~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~--~~~~~g~~~ 481 (599)
T 1w6s_A 404 RELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER--FAVWGGTMA 481 (599)
T ss_dssp TTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES--SCCCSBCEE
T ss_pred CCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC--CCccCcceE
Confidence 55554421 3478999999999988777532 222221222
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 311 PTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 311 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
..+.+++.++.|+.++.||.++|+.+.++
T Consensus 482 tagg~vf~gt~dg~l~A~D~~tG~~lW~~ 510 (599)
T 1w6s_A 482 TAGDLVFYGTLDGYLKARDSDTGDLLWKF 510 (599)
T ss_dssp ETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred ecCCEEEEECCCCeEEEEECCCCCEEEEe
Confidence 35667777999999999999999998775
No 229
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.22 E-value=1.2e-08 Score=87.47 Aligned_cols=189 Identities=9% Similarity=-0.091 Sum_probs=121.5
Q ss_pred eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCC--eEEEEECCCCceeeecCC
Q 019405 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGV--EVNVWDLDKCEKIWTAKP 202 (341)
Q Consensus 125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~--~v~i~d~~~~~~~~~~~~ 202 (341)
.+++...++.+++|+.+. +.+..+... ..... ++++++++.|+++..++ .|.+++...+.....+..
T Consensus 144 lyv~d~~~~~I~~id~~~---------g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~ 212 (409)
T 3hrp_A 144 VLAYQRDDPRVRLISVDD---------NKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQ 212 (409)
T ss_dssp EEEEETTTTEEEEEETTT---------TEEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEE
T ss_pred EEEEecCCCcEEEEECCC---------CEEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeee
Confidence 555556667888887632 234433322 22333 89999999988887765 799999876544333200
Q ss_pred CCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEE-----EecCCC--eEEEEEcCC-CceEE
Q 019405 203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF-----DFRETP--IKAVAEEPD-SFNIY 274 (341)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-----~~~~~~--v~~~~~~~~-~~~l~ 274 (341)
.... ....+.++++ +|++..|+.+..++.|+.||..+... ..+ .++... ...++|+|+ +.+++
T Consensus 213 ~~~~-----~~~~p~~iav--~p~~g~lyv~d~~~~I~~~d~~~~~~--~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv 283 (409)
T 3hrp_A 213 LGST-----FSGKIGAVAL--DETEEWLYFVDSNKNFGRFNVKTQEV--TLIKQLELSGSLGTNPGPYLIYYFVDSNFYM 283 (409)
T ss_dssp CCTT-----SCSCCCBCEE--CTTSSEEEEECTTCEEEEEETTTCCE--EEEEECCCCSCCCCSSCCEEEEETTTTEEEE
T ss_pred ccch-----hcCCcEEEEE--eCCCCeEEEEECCCcEEEEECCCCCE--EEEecccccCCCCCCccccEEEeCCCCEEEE
Confidence 0000 1134678899 78555566677788999999987542 222 111112 238999995 55566
Q ss_pred EEeCCCCEEEEECCCCeEEeEEeccc--------------cCceeEEEecCCCCEEEEEe-CCCcEEEEEcCCCce
Q 019405 275 IGNGSGDLASVDIRTGKLLGCFIGKC--------------SGSIRSIARHPTLPIIASCG-LDSYLRFWDIKTRQL 335 (341)
Q Consensus 275 ~g~~dg~i~iwd~~~~~~~~~~~~~~--------------~~~i~~~~~~~~~~~l~s~~-~dg~v~iwd~~~~~~ 335 (341)
+-...+.|+.|+.... +..+.++. -.....++++|+|.++++-. .++.|+.|++.+|+.
T Consensus 284 ~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v 357 (409)
T 3hrp_A 284 SDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV 357 (409)
T ss_dssp EETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE
T ss_pred EeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE
Confidence 6667788999997643 22333321 13478899999999888877 889999999877764
No 230
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.20 E-value=3e-09 Score=88.40 Aligned_cols=260 Identities=14% Similarity=0.078 Sum_probs=152.1
Q ss_pred CceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeec
Q 019405 14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN 93 (341)
Q Consensus 14 ~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 93 (341)
.-++..++.+|.+..++ .+. +....+......+..+....+ + .|..++.+ |..+|. +++.+..+..
T Consensus 30 ~g~l~v~t~~~~l~~~d-~~g-----~~~~~~~~~~~~~~~~~~~~~----g-~l~v~t~~--l~~~d~-~g~~~~~~~~ 95 (330)
T 3hxj_A 30 NGTIYLGSSNKNLYAIN-TDG-----SVKWFFKSGEIIECRPSIGKD----G-TIYFGSDK--VYAINP-DGTEKWRFDT 95 (330)
T ss_dssp TSCEECSSTTTTTEEEC-TTS-----CEEESSCGGGEEEECCEETTT----T-EECCSSCE--EEEECC-CGGGGGGSCC
T ss_pred CCeEEEEcCCCEEEEEC-CCC-----cEEEEEecCCCcccceEEecC----C-cEEEecCc--EEEECC-CCcEEEEEEC
Confidence 34566777777777777 443 332222212222222222222 2 36666655 888886 6666555443
Q ss_pred cCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeec-CCceEEEEecC
Q 019405 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA-SGTIAFSKVDI 172 (341)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~-~~~i~~~~~~~ 172 (341)
.. ......... .+ .+..++.++.+..++.. . . ..|.... ...+.++...+
T Consensus 96 ~~--------~~~~~~~~~--~~--------~l~v~t~~~~l~~~d~~-g---------~-~~~~~~~~~~~~~~~~~~~ 146 (330)
T 3hxj_A 96 KK--------AIVSDFTIF--ED--------ILYVTSMDGHLYAINTD-G---------T-EKWRFKTKKAIYATPIVSE 146 (330)
T ss_dssp -------------CCEEEE--TT--------EEEEECTTSEEEEECTT-S---------C-EEEEEECSSCCCSCCEECT
T ss_pred CC--------CcccCceEE--CC--------EEEEEecCCEEEEEcCC-C---------C-EEEEEcCCCceeeeeEEcC
Confidence 11 111111111 33 77788888888877753 1 2 2343332 23345556666
Q ss_pred CCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeE
Q 019405 173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM 252 (341)
Q Consensus 173 ~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 252 (341)
++. +..++.++.|..+|.. ++..+.+.... ..+.++.. .+++.+ ..++ +.|..+| .+++. +.
T Consensus 147 ~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~---------~~~~~~~~--d~~g~l-~v~t--~~l~~~d-~~g~~-~~ 208 (330)
T 3hxj_A 147 DGT-IYVGSNDNYLYAINPD-GTEKWRFKTND---------AITSAASI--GKDGTI-YFGS--DKVYAIN-PDGTE-KW 208 (330)
T ss_dssp TSC-EEEECTTSEEEEECTT-SCEEEEEECSS---------CCCSCCEE--CTTCCE-EEES--SSEEEEC-TTSCE-EE
T ss_pred CCE-EEEEcCCCEEEEECCC-CCEeEEEecCC---------CceeeeEE--cCCCEE-EEEe--CEEEEEC-CCCcE-EE
Confidence 666 5557778899999998 77766655332 22455566 566654 4454 7899999 55543 44
Q ss_pred EEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405 253 SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (341)
Q Consensus 253 ~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 332 (341)
........+.++...++|. |.+++.++.|..+|. +++.+..+... ...+..+...+++ .|..++.+|.|..+|. +
T Consensus 209 ~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~-~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~ 283 (330)
T 3hxj_A 209 NFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTG-KRIESSPVIGNTD-TIYFGSYDGHLYAINP-D 283 (330)
T ss_dssp EECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECS-SCCCSCCEECTTS-CEEEECTTCEEEEECT-T
T ss_pred EEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCC-CCccccceEcCCC-eEEEecCCCCEEEECC-C
Confidence 4544555678888888874 556677888888874 56666666544 4445556665555 4556777888999996 6
Q ss_pred Cceeeee
Q 019405 333 RQLLSAV 339 (341)
Q Consensus 333 ~~~~~~~ 339 (341)
++.+..+
T Consensus 284 g~~~~~~ 290 (330)
T 3hxj_A 284 GTEKWNF 290 (330)
T ss_dssp SCEEEEE
T ss_pred CcEEEEE
Confidence 7765543
No 231
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.17 E-value=3.7e-08 Score=82.47 Aligned_cols=261 Identities=8% Similarity=-0.055 Sum_probs=147.4
Q ss_pred CccceeeeccCCCCCceeEEEeccCCCCCceEEEEc--cCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeec
Q 019405 37 GVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR--KNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKR 114 (341)
Q Consensus 37 g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (341)
|..+++..+. .....+++++++. ++++.. .++.++||.+.+++. ..+.... .....+...+.++.+-+.
T Consensus 7 g~~~~v~~~~---~~p~~va~~~~g~----~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~-~~~~~~~~~p~gv~~d~~ 77 (343)
T 2qe8_A 7 DRLEVVAELS---LAPGNITLTPDGR----LFLSLHQFYQPEMQVAELTQDGL-IPFPPQS-GNAIITFDTVLGIKSDGN 77 (343)
T ss_dssp -CCEEEEEES---SCEEEEEECTTSC----EEEEECGGGCCSCSEEEEETTEE-EESCCCC-SSCCCCCSCEEEEEECSS
T ss_pred ceeEEEEEcC---CCcceEEECCCCC----EEEEeCCCCCCceEEEEECCCCe-ecCCCcc-cCcccceeEeeEEEEcCC
Confidence 3334444553 4566777776665 666653 234356666544432 2221100 001112344555555333
Q ss_pred cccccccccceeEEEc-c-----cceeEEEEeeecccccccCCceEEEEEeec-----CCceEEEEecCCCCEE-EEee-
Q 019405 115 QREESSSRSRTLLTCT-T-----KGKASMRSIEVTKVSAESSCSTVKSWNVCA-----SGTIAFSKVDISEKFS-LFGG- 181 (341)
Q Consensus 115 ~~~~~~~~~~~l~~~~-~-----~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~-----~~~i~~~~~~~~~~~l-~~~~- 181 (341)
+ .|..+. . ++.+.+|++.... .++.+.... ...+..+++++++..+ ++..
T Consensus 78 -g--------~L~v~D~g~~~~~~~~i~~~d~~tg~--------~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~ 140 (343)
T 2qe8_A 78 -G--------IVWMLDNGNQSKSVPKLVAWDTLNNQ--------LSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPA 140 (343)
T ss_dssp -S--------EEEEEECHHHHTSCCEEEEEETTTTE--------EEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECC
T ss_pred -C--------cEEEEcCCCCcCCCCeEEEEECCCCe--------EEEEEECChhhcccccccceEEEecCCCEEEEEcCc
Confidence 2 344333 2 4677788764322 345554421 2346789999865454 4444
Q ss_pred --CCCeEEEEECCCCceeeecCCCCCC-c----cCcc---------------CCeeeeEEEEEecCCCCEEEEEeCCC-e
Q 019405 182 --KGVEVNVWDLDKCEKIWTAKPPPKN-S----LGIF---------------TPTWFTSAAFLSIDDHRKFVAGTNDH-Q 238 (341)
Q Consensus 182 --~d~~v~i~d~~~~~~~~~~~~~~~~-~----~~~~---------------~~~~v~~~~~~~~~~~~~l~~~~~d~-~ 238 (341)
.++.|.+||+.+++..+.+..+... . +... ....+..+++ +|+++.|+.+..++ .
T Consensus 141 ~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~--s~dg~~ly~~~~~~~~ 218 (343)
T 2qe8_A 141 PDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVL--DAENEWLYLSPMHSTS 218 (343)
T ss_dssp SGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEE--CTTSCEEEEEESSCSE
T ss_pred cCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEe--ccCCCEEEEEeCCCCe
Confidence 5789999999988776655432110 0 0000 0123678999 89998888877665 5
Q ss_pred EEEEEcC---CCC----cee--EEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEe
Q 019405 239 VRLYDTS---AQR----RPV--MSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIAR 309 (341)
Q Consensus 239 i~iwd~~---~~~----~~~--~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~ 309 (341)
+..++.. .+. ... ....++......++++++|.++++...++.|.+||..+++..............+++|
T Consensus 219 l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~ 298 (343)
T 2qe8_A 219 MYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNF 298 (343)
T ss_dssp EEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEE
T ss_pred EEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEE
Confidence 5555432 110 000 0122344456679999999988888889999999996676543333222456889999
Q ss_pred cCCCCEEEEEeCCCcE
Q 019405 310 HPTLPIIASCGLDSYL 325 (341)
Q Consensus 310 ~~~~~~l~s~~~dg~v 325 (341)
.+++.++++.+..+.+
T Consensus 299 ~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 299 GSDGYLYFDCNQLHHS 314 (343)
T ss_dssp CTTSCEEEEECCGGGS
T ss_pred CCCCcEEEEeCccccc
Confidence 9999888877644433
No 232
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.15 E-value=1.3e-08 Score=86.69 Aligned_cols=211 Identities=11% Similarity=0.106 Sum_probs=132.1
Q ss_pred eeEEEeccCCCCCceEEEEcc--CCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEc
Q 019405 53 CVLAASIDDSQNDPLLAVARK--NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT 130 (341)
Q Consensus 53 ~~~~~s~~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 130 (341)
..+++++|++ +|+++.. ++.|.+.|+.+++.+.++.. ... ....+.... .+++.+
T Consensus 180 ~~~~~spDGk----~lyV~n~~~~~~VsVID~~t~kvv~~I~v----------~g~--~~~~p~g~~-------~~v~~~ 236 (426)
T 3c75_H 180 WMNALTPDNK----NLLFYQFSPAPAVGVVDLEGKTFDRMLDV----------PDC--YHIFPASPT-------VFYMNC 236 (426)
T ss_dssp GGSEECTTSS----EEEEEECSSSCEEEEEETTTTEEEEEEEC----------CSE--EEEEEEETT-------EEEEEE
T ss_pred ceEEEcCCCC----EEEEEecCCCCeEEEEECCCCeEEEEEEc----------CCc--eeeccCCCc-------EEEEEc
Confidence 3456666665 7887763 58899999999998887765 111 222232221 667777
Q ss_pred ccceeEEEEeeecccccccCCceE-EEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceee--ecCC--CCC
Q 019405 131 TKGKASMRSIEVTKVSAESSCSTV-KSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIW--TAKP--PPK 205 (341)
Q Consensus 131 ~~g~~~i~~~~~~~~~~~~~~~~v-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~--~~~~--~~~ 205 (341)
.||.+.+.+........ .. ..++.........+.+.+++..++.....+.|.+.|........ .+.. ...
T Consensus 237 ~dG~~~~V~~~~~~v~~-----~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~ 311 (426)
T 3c75_H 237 RDGSLARVDFADGETKV-----TNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAE 311 (426)
T ss_dssp TTSSEEEEECCTTCCEE-----EECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTT
T ss_pred CCCCEEEEECCCCcEEE-----EeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccc
Confidence 88888777762222110 00 12222222112245678888887777788999999986543221 1110 000
Q ss_pred CccCccCCeeeeEEEEEecCCCCEEEEEeC----------CCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCc-eEE
Q 019405 206 NSLGIFTPTWFTSAAFLSIDDHRKFVAGTN----------DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSF-NIY 274 (341)
Q Consensus 206 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~ 274 (341)
..... .+.....+++ +++++++++... ++.|.++|..+.+. +..+.... ....+.|+|+++ +++
T Consensus 312 i~~g~-~p~g~~~va~--s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kv-v~~I~vg~-~P~gia~spDg~~~ly 386 (426)
T 3c75_H 312 RADDW-RPGGWQQTAY--HRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGER-INKIELGH-EIDSINVSQDAEPLLY 386 (426)
T ss_dssp GGGTE-EECSSSCEEE--EGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE-EEEEEEEE-EECEEEECCSSSCEEE
T ss_pred ccccc-ccCCceeeEE--cCCCCEEEEEecccccccccCCCCEEEEEECCCCeE-EEEEECCC-CcCeEEEccCCCEEEE
Confidence 00000 0111223677 778887776642 35799999999775 66665432 467899999998 888
Q ss_pred EEe-CCCCEEEEECCCCeEEeEE
Q 019405 275 IGN-GSGDLASVDIRTGKLLGCF 296 (341)
Q Consensus 275 ~g~-~dg~i~iwd~~~~~~~~~~ 296 (341)
+.. .++.|.++|+.+++.+.++
T Consensus 387 v~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 387 ALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEETTTTEEEEEETTTCCEEEEE
T ss_pred EEcCCCCeEEEEECCCCCEEEEe
Confidence 888 5899999999999999887
No 233
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.15 E-value=7.7e-08 Score=81.40 Aligned_cols=173 Identities=12% Similarity=0.045 Sum_probs=111.3
Q ss_pred ceeEEEEeeecccccccCCceEEEEEeecCC--ceEEEEecCCCCEEEEee-------------------CCCeEEEEEC
Q 019405 133 GKASMRSIEVTKVSAESSCSTVKSWNVCASG--TIAFSKVDISEKFSLFGG-------------------KGVEVNVWDL 191 (341)
Q Consensus 133 g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~--~i~~~~~~~~~~~l~~~~-------------------~d~~v~i~d~ 191 (341)
|.+.+.|.+.. ..+..|...... .-..+.|+|+++.+++.. .+.+|.+||+
T Consensus 164 g~v~vlD~~T~--------~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~ 235 (462)
T 2ece_A 164 GGILMLDHYSF--------EPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDL 235 (462)
T ss_dssp CEEEEECTTTC--------CEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEET
T ss_pred CeEEEEECCCC--------eEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEEC
Confidence 55666664422 245566543222 234577899999888874 3679999999
Q ss_pred CCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEe------CCCeEEEEEcCCCCc-eeEEE--Eec-----
Q 019405 192 DKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT------NDHQVRLYDTSAQRR-PVMSF--DFR----- 257 (341)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~------~d~~i~iwd~~~~~~-~~~~~--~~~----- 257 (341)
.+++.+..+...... .....+.|..+|+++++.+++ .+++|.+|....++- ..+.+ ...
T Consensus 236 ~~~k~~~tI~vg~~g-------~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~ 308 (462)
T 2ece_A 236 RKRKRIHSLTLGEEN-------RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGN 308 (462)
T ss_dssp TTTEEEEEEESCTTE-------EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSS
T ss_pred CCCcEeeEEecCCCC-------CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccc
Confidence 988777766653110 224455564488999888776 456888776654321 01111 110
Q ss_pred -----------CCCeEEEEEcCCCceEEEEeC-CCCEEEEECC---CCeEEeEEecccc-------------CceeEEEe
Q 019405 258 -----------ETPIKAVAEEPDSFNIYIGNG-SGDLASVDIR---TGKLLGCFIGKCS-------------GSIRSIAR 309 (341)
Q Consensus 258 -----------~~~v~~~~~~~~~~~l~~g~~-dg~i~iwd~~---~~~~~~~~~~~~~-------------~~i~~~~~ 309 (341)
......+.+||||++|+++.. .+.|.+||+. +.+++..+..... +.-..+++
T Consensus 309 lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~l 388 (462)
T 2ece_A 309 LPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEI 388 (462)
T ss_dssp CCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEE
T ss_pred ccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEE
Confidence 134678999999999988775 6889999985 3356655543200 12578999
Q ss_pred cCCCCEEEEEe
Q 019405 310 HPTLPIIASCG 320 (341)
Q Consensus 310 ~~~~~~l~s~~ 320 (341)
+|||++|+.+.
T Consensus 389 SpDGk~LyVaN 399 (462)
T 2ece_A 389 SRDGRRVYVTN 399 (462)
T ss_dssp CTTSSEEEEEC
T ss_pred cCCCCEEEEEc
Confidence 99999988887
No 234
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.14 E-value=4.5e-08 Score=80.52 Aligned_cols=190 Identities=13% Similarity=0.043 Sum_probs=121.2
Q ss_pred eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCC
Q 019405 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP 204 (341)
Q Consensus 125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~ 204 (341)
.+++...++.+..|+. ++.+..+.. ....+..++++++++++++...++.|..|+.. ++.........
T Consensus 59 l~~~d~~~~~i~~~~~----------~g~~~~~~~-~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~ 126 (305)
T 3dr2_A 59 LVWSDLVGRRVLGWRE----------DGTVDVLLD-ATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYA 126 (305)
T ss_dssp EEEEETTTTEEEEEET----------TSCEEEEEE-SCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEET
T ss_pred EEEEECCCCEEEEEeC----------CCCEEEEeC-CCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccC
Confidence 5677777888888863 223444443 34568899999999977766666789999986 54322211111
Q ss_pred CCccCccCCeeeeEEEEEecCCCCEEEE----EeC-------------CCeEEEEEcCCCCceeEEEEecCCCeEEEEEc
Q 019405 205 KNSLGIFTPTWFTSAAFLSIDDHRKFVA----GTN-------------DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEE 267 (341)
Q Consensus 205 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~----~~~-------------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 267 (341)
.. ....+..+++ .+++++.++ |.. .+.|..||..+++. ..+. .......++|+
T Consensus 127 ~~-----~~~~~~~i~~--d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~--~~~~-~~~~p~gl~~s 196 (305)
T 3dr2_A 127 GK-----RLNSPNDLIV--ARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL--QRMA-DLDHPNGLAFS 196 (305)
T ss_dssp TE-----ECSCCCCEEE--CTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC--EEEE-EESSEEEEEEC
T ss_pred CC-----ccCCCCCEEE--CCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcE--EEEe-cCCCCcceEEc
Confidence 00 0133667888 889988776 332 25677788765543 2222 33456789999
Q ss_pred CCCceEEEEeCC------CCEEEEECCCCeEE--eEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 268 PDSFNIYIGNGS------GDLASVDIRTGKLL--GCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 268 ~~~~~l~~g~~d------g~i~iwd~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
|+++.|+.+... +.|++|++..+.+. ..+..........++++++|++.++. .+ .|.+|+. +++.+..+
T Consensus 197 pdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~-gv~~~~~-~g~~~~~~ 273 (305)
T 3dr2_A 197 PDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS-GT-GVCVFDS-DGQLLGHI 273 (305)
T ss_dssp TTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC-SS-EEEEECT-TSCEEEEE
T ss_pred CCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec-CC-cEEEECC-CCCEEEEE
Confidence 999988877665 68999998765421 11211113445678999999955544 44 4999998 46666554
No 235
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.14 E-value=2.9e-08 Score=82.40 Aligned_cols=218 Identities=11% Similarity=0.016 Sum_probs=137.9
Q ss_pred eEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccc
Q 019405 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS 146 (341)
Q Consensus 67 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~ 146 (341)
.|..++.++.|..+|.. ++......... ..+..+ ....++ .+..++.++.+..++.. ..
T Consensus 109 ~l~v~t~~~~l~~~d~~-g~~~~~~~~~~--------~~~~~~-~~~~~g--------~l~vgt~~~~l~~~d~~-g~-- 167 (330)
T 3hxj_A 109 ILYVTSMDGHLYAINTD-GTEKWRFKTKK--------AIYATP-IVSEDG--------TIYVGSNDNYLYAINPD-GT-- 167 (330)
T ss_dssp EEEEECTTSEEEEECTT-SCEEEEEECSS--------CCCSCC-EECTTS--------CEEEECTTSEEEEECTT-SC--
T ss_pred EEEEEecCCEEEEEcCC-CCEEEEEcCCC--------ceeeee-EEcCCC--------EEEEEcCCCEEEEECCC-CC--
Confidence 58888889999999997 76655544311 111112 222233 67778888888888754 21
Q ss_pred cccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCC
Q 019405 147 AESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD 226 (341)
Q Consensus 147 ~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 226 (341)
.+..+.. ....+.++..++++.+.+. + +.|..+| .+++..+...... ..+.++.. .++
T Consensus 168 ------~~~~~~~-~~~~~~~~~~d~~g~l~v~-t--~~l~~~d-~~g~~~~~~~~~~---------~~~~~~~~--~~~ 225 (330)
T 3hxj_A 168 ------EKWRFKT-NDAITSAASIGKDGTIYFG-S--DKVYAIN-PDGTEKWNFYAGY---------WTVTRPAI--SED 225 (330)
T ss_dssp ------EEEEEEC-SSCCCSCCEECTTCCEEEE-S--SSEEEEC-TTSCEEEEECCSS---------CCCSCCEE--CTT
T ss_pred ------EeEEEec-CCCceeeeEEcCCCEEEEE-e--CEEEEEC-CCCcEEEEEccCC---------cceeceEE--CCC
Confidence 1222221 2334566677777775554 4 7799999 7777776665432 23666677 566
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeE
Q 019405 227 HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRS 306 (341)
Q Consensus 227 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~ 306 (341)
+ .|..++.++.|..+|.. ++. +..+......+..+.+.+++ .|.+++.+|.|..+|. +++.+..+... ...+.+
T Consensus 226 g-~l~v~t~~~gl~~~~~~-g~~-~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~-~~~~~~ 299 (330)
T 3hxj_A 226 G-TIYVTSLDGHLYAINPD-GTE-KWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETG-SWIIAT 299 (330)
T ss_dssp S-CEEEEETTTEEEEECTT-SCE-EEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECS-SCCCSC
T ss_pred C-eEEEEcCCCeEEEECCC-CCE-eEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcC-Cccccc
Confidence 5 55666778888888743 343 45555444444455665555 5677888889999996 78777777654 566778
Q ss_pred EEecCCCCEEEEEeCCCcEEEEEcCCCc
Q 019405 307 IARHPTLPIIASCGLDSYLRFWDIKTRQ 334 (341)
Q Consensus 307 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 334 (341)
+...+++.+ ..++.+|.+++...+..+
T Consensus 300 ~~~d~~g~l-~~gt~~G~~~~~~~~~~~ 326 (330)
T 3hxj_A 300 PVIDENGTI-YFGTRNGKFYALFNLEHH 326 (330)
T ss_dssp CEECTTCCE-EEECTTSCEEEEEC----
T ss_pred eEEcCCCEE-EEEcCCCeEEEEeccccc
Confidence 888777764 457789999998776543
No 236
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.11 E-value=5.2e-08 Score=85.33 Aligned_cols=238 Identities=12% Similarity=0.032 Sum_probs=153.3
Q ss_pred EEEEccCCeEEEeeCCCCcchheeeccCCCCCCC---------------------------------CCCceeeEeeeec
Q 019405 68 LAVARKNGLTDILNPLNGDLRVAISNAGDSGAQP---------------------------------EDDGIVGLHLFKR 114 (341)
Q Consensus 68 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~ 114 (341)
+.+|+..|.++|+-+.+++.+..+..+......+ .+..-..+..-+.
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 7778899999999999888887777654333221 0000011111000
Q ss_pred cccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEe-c-CCCCEEEEee-----------
Q 019405 115 QREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV-D-ISEKFSLFGG----------- 181 (341)
Q Consensus 115 ~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~-~-~~~~~l~~~~----------- 181 (341)
.. .+...++....++.+.+.++...+ .+.+..+........+++ + |+++++++++
T Consensus 98 ~~----DG~~lfVnd~~~~rVavIdl~t~~--------~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~ 165 (595)
T 1fwx_A 98 KY----DGRFLFMNDKANTRVARVRCDVMK--------CDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGT 165 (595)
T ss_dssp EE----EEEEEEEEETTTTEEEEEETTTTE--------EEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSS
T ss_pred Cc----CCCEEEEEcCCCCEEEEEECCCce--------EeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCc
Confidence 00 011134444455667777765433 445555555567788887 5 8999998884
Q ss_pred -------CCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCC-----------------
Q 019405 182 -------KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH----------------- 237 (341)
Q Consensus 182 -------~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~----------------- 237 (341)
.++.+.+.|.++.+..+++..... ...+++ +|+++++++.+.+.
T Consensus 166 ~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~----------pd~~~~--spdGk~~~vt~~~se~~~~i~~~~~~~~d~v 233 (595)
T 1fwx_A 166 NMEDVANYVNVFTAVDADKWEVAWQVLVSGN----------LDNCDA--DYEGKWAFSTSYNSEKGMTLPEMTAAEMDHI 233 (595)
T ss_dssp STTCGGGEEEEEEEEETTTTEEEEEEEESSC----------CCCEEE--CSSSSEEEEEESCTTCCSSHHHHTCCSEEEE
T ss_pred ccccccccCceEEEEECCCCeEEEEEEeCCC----------ccceEE--CCCCCEEEEEecCcccCcchhhccccccceE
Confidence 245799999999888887664321 233456 77888888777543
Q ss_pred ---------------------eEEEEEcCC--CCceeEEEEecCCCeEEEEEcCCCceEEEEe-CCCCEEEEECCCCe--
Q 019405 238 ---------------------QVRLYDTSA--QRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGK-- 291 (341)
Q Consensus 238 ---------------------~i~iwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~dg~i~iwd~~~~~-- 291 (341)
.|.+.|.++ ++..+..+... ....++.++|||+++++++ .++.|.++|+.+.+
T Consensus 234 ~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~ 312 (595)
T 1fwx_A 234 VVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAV 312 (595)
T ss_dssp EEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHH
T ss_pred EEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccc
Confidence 366777765 33213344332 2456799999999877666 57899999998653
Q ss_pred ----------EEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405 292 ----------LLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (341)
Q Consensus 292 ----------~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 332 (341)
....... ......++|+|+|...++.-.|++|.+||+.+
T Consensus 313 ~~~~l~~~~~v~~~v~v--G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 313 FYENADPRSAVVAEPEL--GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp HHSCCCGGGGEEECCBC--CSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred cccccCcccceEEEcCC--CCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 3334432 35678899999995556667899999999987
No 237
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=99.07 E-value=2.5e-07 Score=82.83 Aligned_cols=167 Identities=15% Similarity=0.154 Sum_probs=105.9
Q ss_pred EEecCCCCEEEEeeC--------------------C----CeEEEEECCCCceeeecCCCCCCccCccC-CeeeeEEEEE
Q 019405 168 SKVDISEKFSLFGGK--------------------G----VEVNVWDLDKCEKIWTAKPPPKNSLGIFT-PTWFTSAAFL 222 (341)
Q Consensus 168 ~~~~~~~~~l~~~~~--------------------d----~~v~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~ 222 (341)
.+++|+..+++.+.. | +.|..+|.++++.++.++........... ..++. +...
T Consensus 251 ~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~ 329 (582)
T 1flg_A 251 ASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYK 329 (582)
T ss_dssp CEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEE
T ss_pred ceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Eeee
Confidence 456677777776552 2 58999999999999987653221111000 01111 1110
Q ss_pred ecCCC---CEEEEEeCCCeEEEEEcCCCCceeEEEEecC-------------CC--------------------------
Q 019405 223 SIDDH---RKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE-------------TP-------------------------- 260 (341)
Q Consensus 223 ~~~~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-------------~~-------------------------- 260 (341)
..++ ..++.++.+|.++++|..+++. +..+.... .+
T Consensus 330 -~~~G~~~~~v~~~~~~G~l~~lD~~tG~~-lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~ 407 (582)
T 1flg_A 330 -AKDGKIVKATAHADRNGFFYVVDRSNGKL-QNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPP 407 (582)
T ss_dssp -CSSSCEEEEEEEECTTSEEEEEETTTCCE-EEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSC
T ss_pred -cCCCCEEEEEEEECCCceEEEEECCCCCE-ecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcC
Confidence 1356 3788899999999999998774 44433221 00
Q ss_pred ------eEEEEEcCCCceEEEEe---------------------------------CCCCEEEEECCCCeEEeEEecccc
Q 019405 261 ------IKAVAEEPDSFNIYIGN---------------------------------GSGDLASVDIRTGKLLGCFIGKCS 301 (341)
Q Consensus 261 ------v~~~~~~~~~~~l~~g~---------------------------------~dg~i~iwd~~~~~~~~~~~~~~~ 301 (341)
-..++++|+..++++.. .+|.|..||+.+++.+.+....
T Consensus 408 ~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~-- 485 (582)
T 1flg_A 408 FLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH-- 485 (582)
T ss_dssp TTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES--
T ss_pred CccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCC--
Confidence 01345666655555432 2578999999999988777643
Q ss_pred CceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 302 GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 302 ~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
.++..-.....+.+++.++.|+.++.||.++|+.+.++
T Consensus 486 ~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~ 523 (582)
T 1flg_A 486 LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKF 523 (582)
T ss_dssp SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEe
Confidence 23332222234667888999999999999999999875
No 238
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.06 E-value=7.5e-08 Score=76.44 Aligned_cols=171 Identities=12% Similarity=0.007 Sum_probs=117.4
Q ss_pred EEEEEeecCCceEEEEecCCCCEEEEeeC--CCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEE
Q 019405 154 VKSWNVCASGTIAFSKVDISEKFSLFGGK--GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV 231 (341)
Q Consensus 154 v~~~~~~~~~~i~~~~~~~~~~~l~~~~~--d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 231 (341)
+..+..........+.+++++.+.++.+. ++.|.++|+.+++.+..+..... .....+++ . .+.+.+
T Consensus 12 v~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~--------~fgeGi~~--~-g~~lyv 80 (266)
T 2iwa_A 12 LNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDS--------YFGEGLTL--L-NEKLYQ 80 (266)
T ss_dssp EEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTT--------CCEEEEEE--E-TTEEEE
T ss_pred EEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCC--------cceEEEEE--e-CCEEEE
Confidence 34444332234678999998655554443 57999999999998887654321 11334555 3 234445
Q ss_pred EEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccc----cCceeEE
Q 019405 232 AGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC----SGSIRSI 307 (341)
Q Consensus 232 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~----~~~i~~~ 307 (341)
+.-.++.+.++|..+.+. +..+...... ...++++|+.++++..++.|.++|..+.+.+..+.... -..++.+
T Consensus 81 ~t~~~~~v~viD~~t~~v-~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nel 157 (266)
T 2iwa_A 81 VVWLKNIGFIYDRRTLSN-IKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNEL 157 (266)
T ss_dssp EETTCSEEEEEETTTTEE-EEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEE
T ss_pred EEecCCEEEEEECCCCcE-EEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeE
Confidence 555688999999998664 6666533111 23355688888887788999999999999888876431 1236788
Q ss_pred EecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 308 ARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 308 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
.|. ++..++..-.++.|.+.|.++++.+.++
T Consensus 158 e~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I 188 (266)
T 2iwa_A 158 EYI-NGEVWANIWQTDCIARISAKDGTLLGWI 188 (266)
T ss_dssp EEE-TTEEEEEETTSSEEEEEETTTCCEEEEE
T ss_pred EEE-CCEEEEecCCCCeEEEEECCCCcEEEEE
Confidence 888 7766666656789999999999998876
No 239
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.04 E-value=3.5e-08 Score=86.39 Aligned_cols=242 Identities=12% Similarity=0.037 Sum_probs=146.3
Q ss_pred EEEec-cCCCCCceEEEEc-cCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeee-ccccccccccceeEEEc-
Q 019405 55 LAASI-DDSQNDPLLAVAR-KNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFK-RQREESSSRSRTLLTCT- 130 (341)
Q Consensus 55 ~~~s~-~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~- 130 (341)
..+|. ++.++|++|.+.. .+++|.+.|+.+.++.+.+.. +.......+.+.. ++.. ++++++
T Consensus 90 ~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~i-------p~g~~phg~~~~~~p~~~-------~v~~~~~ 155 (595)
T 1fwx_A 90 VHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEI-------PNAKGIHGLRPQKWPRSN-------YVFCNGE 155 (595)
T ss_dssp EEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEEC-------SSCCSEEEEEECCSSBCS-------EEEEEEC
T ss_pred cccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeC-------CCCCCCcceeeeecCCCc-------EEEEecc
Confidence 45555 6666777766654 467799999999988775543 2223455555533 2221 555553
Q ss_pred -----------------ccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCC---------
Q 019405 131 -----------------TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGV--------- 184 (341)
Q Consensus 131 -----------------~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~--------- 184 (341)
.++.+.+.|.+. .-..|.+.-++....++++|+|+++++.+.+.
T Consensus 156 ~~~p~~~dg~~l~~~~~~~~~vtvID~~t----------~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~ 225 (595)
T 1fwx_A 156 DETPLVNDGTNMEDVANYVNVFTAVDADK----------WEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEM 225 (595)
T ss_dssp SCEESSCSSSSTTCGGGEEEEEEEEETTT----------TEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHH
T ss_pred cccccCCCCcccccccccCceEEEEECCC----------CeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhc
Confidence 223445555432 12234443333445677888888888776542
Q ss_pred -----------------------------eEEEEECCC--Cce-eeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEE
Q 019405 185 -----------------------------EVNVWDLDK--CEK-IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA 232 (341)
Q Consensus 185 -----------------------------~v~i~d~~~--~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 232 (341)
.|.+.|.++ ++. +..+.. .....++.+ +|||+++++
T Consensus 226 ~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv----------g~~PhGv~~--sPDGk~v~V 293 (595)
T 1fwx_A 226 TAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI----------ANNPHGCNM--APDKKHLCV 293 (595)
T ss_dssp TCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE----------ESSCCCEEE--CTTSSEEEE
T ss_pred cccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec----------CCCceEEEE--cCCCCEEEE
Confidence 244444443 222 112211 123567788 899998776
Q ss_pred Ee-CCCeEEEEEcCCCC-----------ceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCC----------C
Q 019405 233 GT-NDHQVRLYDTSAQR-----------RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT----------G 290 (341)
Q Consensus 233 ~~-~d~~i~iwd~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~----------~ 290 (341)
++ .+.+|.++|+.+.+ ..+.... -......++|+|+|...++...|+.|..||+.+ .
T Consensus 294 ~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~ 372 (595)
T 1fwx_A 294 AGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVD 372 (595)
T ss_dssp ECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCC
T ss_pred eCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccc
Confidence 65 57899999998642 1122222 223567899999994444566799999999977 5
Q ss_pred eEEeEEeccccCce-----eEEEecCCCCEEEEEeC---CCcE----------EEEEcCCCc
Q 019405 291 KLLGCFIGKCSGSI-----RSIARHPTLPIIASCGL---DSYL----------RFWDIKTRQ 334 (341)
Q Consensus 291 ~~~~~~~~~~~~~i-----~~~~~~~~~~~l~s~~~---dg~v----------~iwd~~~~~ 334 (341)
+.+.++..| ..+- ..+.++|||++|+++.. |+.+ .++|+..++
T Consensus 373 ~vi~kidV~-yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 373 PIKDKLDVH-YQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp CEEEEEECS-SCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred eeEEEeecc-cccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 667777765 2221 23356899999988763 4432 889996544
No 240
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.02 E-value=3.5e-06 Score=67.67 Aligned_cols=234 Identities=7% Similarity=-0.071 Sum_probs=134.0
Q ss_pred CceEEEEccCCeEEEeeCCCCcchh-----eeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEE
Q 019405 65 DPLLAVARKNGLTDILNPLNGDLRV-----AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRS 139 (341)
Q Consensus 65 ~~~l~~~~~dg~i~iw~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~ 139 (341)
|++|+.+.. +.|+.+++....... .+.. ......++.+-+..+. .+++-..++.+..++
T Consensus 1 ~~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~--------~~~~~~gi~~d~~~~~-------ly~~d~~~~~I~~~~ 64 (267)
T 1npe_A 1 GTHLLFAQT-GKIERLPLERNTMKKTEAKAFLHI--------PAKVIIGLAFDCVDKV-------VYWTDISEPSIGRAS 64 (267)
T ss_dssp CEEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEE--------EEEEEEEEEEETTTTE-------EEEEETTTTEEEEEE
T ss_pred CcEEEEEcC-CeEEEEEecCcccccccceeeecC--------CCCcEEEEEEecCCCE-------EEEEECCCCEEEEEe
Confidence 345666663 588889886543211 0110 0123344554433331 455555667888777
Q ss_pred eeecccccccCCceEEEEEeecCCceEEEEecCCCCEEE-EeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeE
Q 019405 140 IEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSL-FGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTS 218 (341)
Q Consensus 140 ~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 218 (341)
++... +..+-.........+++++++..++ +-...+.|.++++............ ......
T Consensus 65 ~~g~~---------~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~---------~~~P~~ 126 (267)
T 1npe_A 65 LHGGE---------PTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTG---------LVNPRG 126 (267)
T ss_dssp SSSCC---------CEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS---------CSSEEE
T ss_pred cCCCC---------cEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECC---------CCCccE
Confidence 64221 1111111124678899998765555 4455678999998643221111111 023577
Q ss_pred EEEEecCCCCEEEEEeC---CCeEEEEEcCCCCceeEEEE-ecCCCeEEEEEcCCCceEEEEe-CCCCEEEEECCCCeEE
Q 019405 219 AAFLSIDDHRKFVAGTN---DHQVRLYDTSAQRRPVMSFD-FRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLL 293 (341)
Q Consensus 219 ~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~ 293 (341)
+++ +|++..|..+.. .+.|..+++.... ...+. ..-.....++++|++..|+.+. ..+.|..+|+......
T Consensus 127 i~v--d~~~g~lyv~~~~~~~~~I~~~~~dg~~--~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~ 202 (267)
T 1npe_A 127 IVT--DPVRGNLYWTDWNRDNPKIETSHMDGTN--RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRR 202 (267)
T ss_dssp EEE--ETTTTEEEEEECCSSSCEEEEEETTSCC--CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEE
T ss_pred EEE--eeCCCEEEEEECCCCCcEEEEEecCCCC--cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceE
Confidence 888 776555555443 4688888876532 22222 2234568899999876665554 5678999999755443
Q ss_pred eEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 294 GCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 294 ~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
..+.. ......++.. ++.++++....+.|..+|..+++.+.++
T Consensus 203 ~~~~~--~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i 245 (267)
T 1npe_A 203 KVLEG--LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTF 245 (267)
T ss_dssp EEEEC--CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEecC--CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEE
Confidence 33332 2334567664 3444444446689999999999888776
No 241
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.99 E-value=1.5e-07 Score=73.84 Aligned_cols=170 Identities=9% Similarity=0.016 Sum_probs=117.4
Q ss_pred eEEEEEeecCCceEEEEecCCCCEEEEeeCCC--eEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEE
Q 019405 153 TVKSWNVCASGTIAFSKVDISEKFSLFGGKGV--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF 230 (341)
Q Consensus 153 ~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 230 (341)
.++.+..........+.|+ ++.+..+.+.+| .|+.+|+++++.+..+..... ..-..++. . ++.+.
T Consensus 33 vv~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~--------~FgeGit~--~-g~~ly 100 (262)
T 3nol_A 33 IVHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKR--------YFGEGISD--W-KDKIV 100 (262)
T ss_dssp EEEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTT--------CCEEEEEE--E-TTEEE
T ss_pred EEEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCc--------cceeEEEE--e-CCEEE
Confidence 3445544334456888898 666667777766 899999999999887764321 11233455 2 23344
Q ss_pred EEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccc-c---CceeE
Q 019405 231 VAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC-S---GSIRS 306 (341)
Q Consensus 231 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~-~---~~i~~ 306 (341)
+..-.++.+.+||..+.+. +.++...... ..+ ++++..|+.+..++.|.++|..+.+.+..+.... . ..++.
T Consensus 101 ~ltw~~~~v~v~D~~t~~~-~~ti~~~~eG-~gl--t~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNE 176 (262)
T 3nol_A 101 GLTWKNGLGFVWNIRNLRQ-VRSFNYDGEG-WGL--THNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNE 176 (262)
T ss_dssp EEESSSSEEEEEETTTCCE-EEEEECSSCC-CCE--EECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEE
T ss_pred EEEeeCCEEEEEECccCcE-EEEEECCCCc-eEE--ecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccce
Confidence 4445688999999998775 7777653322 233 3577788877778889999999999888876531 1 33556
Q ss_pred EEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 307 IARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 307 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
+.|. +|...+..-.+..|.+.|.++|+.+..+
T Consensus 177 Le~~-~G~lyan~w~~~~I~vIDp~tG~V~~~I 208 (262)
T 3nol_A 177 LEWV-DGEIFANVWQTNKIVRIDPETGKVTGII 208 (262)
T ss_dssp EEEE-TTEEEEEETTSSEEEEECTTTCBEEEEE
T ss_pred eEEE-CCEEEEEEccCCeEEEEECCCCcEEEEE
Confidence 7886 7766666657889999999999998776
No 242
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.99 E-value=1.4e-07 Score=78.86 Aligned_cols=166 Identities=10% Similarity=0.028 Sum_probs=108.8
Q ss_pred CceEEEEecCCCCEEEEeeC-----CCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCE-EEEEe--
Q 019405 163 GTIAFSKVDISEKFSLFGGK-----GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRK-FVAGT-- 234 (341)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~~-----d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-l~~~~-- 234 (341)
..+..++++++++++++-.. ++.|.+||+.+++.+..+..+.... .+...+..+++ ++++.. +++..
T Consensus 67 ~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~---~~~~~~~~v~v--d~~~g~~yvtd~~~ 141 (343)
T 2qe8_A 67 DTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPIT---LSNSFVNDLAV--DLIHNFVYISDPAP 141 (343)
T ss_dssp SCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTS---CTTCCCCEEEE--ETTTTEEEEEECCS
T ss_pred eEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhc---ccccccceEEE--ecCCCEEEEEcCcc
Confidence 46889999999887665433 5789999999988766554321110 11234678888 665444 45544
Q ss_pred -CCCeEEEEEcCCCCceeEEEEec-----------------------------CCCeEEEEEcCCCceEEEEeCCC-CEE
Q 019405 235 -NDHQVRLYDTSAQRRPVMSFDFR-----------------------------ETPIKAVAEEPDSFNIYIGNGSG-DLA 283 (341)
Q Consensus 235 -~d~~i~iwd~~~~~~~~~~~~~~-----------------------------~~~v~~~~~~~~~~~l~~g~~dg-~i~ 283 (341)
.++.|.+||+.+++. .+.+..| ...+..++|+|+++.|+.+..++ .++
T Consensus 142 ~~~~~i~v~d~~~g~~-~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~ 220 (343)
T 2qe8_A 142 DDKAALIRVDLQTGLA-ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMY 220 (343)
T ss_dssp GGGCEEEEEETTTCCE-EEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEE
T ss_pred CCCCeEEEEECCCCCE-EEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEE
Confidence 678999999986542 3322211 02357899999999888887765 455
Q ss_pred EEECC---CCe-----EEe--EEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCce
Q 019405 284 SVDIR---TGK-----LLG--CFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL 335 (341)
Q Consensus 284 iwd~~---~~~-----~~~--~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 335 (341)
.++.. .+. ... ...++ ......++++++|.++++...++.|.+||.++|+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~g~-~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~ 281 (343)
T 2qe8_A 221 RIKSADLSNLQLTDAELGSKIERYSE-KPICDGISIDKDHNIYVGDLAHSAIGVITSADRAY 281 (343)
T ss_dssp EEEHHHHTCTTCCHHHHHTTCEEEEE-CCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEE
T ss_pred EEEHHHhcCCCCChhhhhcceEeccc-CCCCceEEECCCCCEEEEccCCCeEEEEECCCCCE
Confidence 55432 111 000 11122 34567899999999999998999999999856653
No 243
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.96 E-value=1.3e-06 Score=74.08 Aligned_cols=193 Identities=9% Similarity=0.018 Sum_probs=125.8
Q ss_pred eeEEEcccceeEEEEeeecccccccCCceEEEEE---e--ecC-CceEEEEecCCCCEEEEeeCC------CeEEEEECC
Q 019405 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN---V--CAS-GTIAFSKVDISEKFSLFGGKG------VEVNVWDLD 192 (341)
Q Consensus 125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~---~--~~~-~~i~~~~~~~~~~~l~~~~~d------~~v~i~d~~ 192 (341)
.++.+..++.|.++|+...+. .-..++..+ + ..+ ..-..+...|++ +++++..+ +.|.++|.+
T Consensus 98 l~v~~l~s~~I~viD~~t~p~----~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~ 172 (462)
T 2ece_A 98 LIVPGLRSSRIYIIDTKPNPR----EPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHY 172 (462)
T ss_dssp EEEEBTTTCCEEEEECCSCTT----SCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTT
T ss_pred EEEccCCCCeEEEEECCCCCC----CceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECC
Confidence 677788889999999864431 111333331 1 011 134566778999 66665544 789999999
Q ss_pred CCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEe-------------------CCCeEEEEEcCCCCceeEE
Q 019405 193 KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-------------------NDHQVRLYDTSAQRRPVMS 253 (341)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-------------------~d~~i~iwd~~~~~~~~~~ 253 (341)
+.+.+..+...... ...-..+.| +|+++.+++.. .+.+|.+||+.+++ .+.+
T Consensus 173 T~~v~~~~~~~~~~------~~~~Yd~~~--~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k-~~~t 243 (462)
T 2ece_A 173 SFEPLGKWEIDRGD------QYLAYDFWW--NLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK-RIHS 243 (462)
T ss_dssp TCCEEEECCSBCTT------CCCCCCEEE--ETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE-EEEE
T ss_pred CCeEEEEEccCCCC------ccccceEEE--CCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc-EeeE
Confidence 99988887743221 112345677 78999888874 36899999999854 4666
Q ss_pred EEecC--CCeEEEEE--cCCCceEEEEeC------CCCEEEEECCCCeE--EeEE--ecc---------------ccCce
Q 019405 254 FDFRE--TPIKAVAE--EPDSFNIYIGNG------SGDLASVDIRTGKL--LGCF--IGK---------------CSGSI 304 (341)
Q Consensus 254 ~~~~~--~~v~~~~~--~~~~~~l~~g~~------dg~i~iwd~~~~~~--~~~~--~~~---------------~~~~i 304 (341)
+.... .....+.| +|+++++++++. +++|.+|....++. +..+ ... .....
T Consensus 244 I~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~p 323 (462)
T 2ece_A 244 LTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLV 323 (462)
T ss_dssp EESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCC
T ss_pred EecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCce
Confidence 66431 12334555 999999888774 56888776655432 1111 110 01347
Q ss_pred eEEEecCCCCEEEEEeC-CCcEEEEEcC
Q 019405 305 RSIARHPTLPIIASCGL-DSYLRFWDIK 331 (341)
Q Consensus 305 ~~~~~~~~~~~l~s~~~-dg~v~iwd~~ 331 (341)
..+.++|||++|..+.. .+.|.+||+.
T Consensus 324 a~I~lS~DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 324 TDIDISLDDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp CCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred eEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence 88999999998877764 6799999986
No 244
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.94 E-value=1.2e-06 Score=69.47 Aligned_cols=177 Identities=10% Similarity=-0.041 Sum_probs=117.4
Q ss_pred cceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEE-EeeCCCeEEEEECCCCceeeecCCCCCCccCc
Q 019405 132 KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSL-FGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGI 210 (341)
Q Consensus 132 ~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~ 210 (341)
++.+.+.|+...+ .+....+........++++ ++.|+ +.-.++.+.++|..+.+.+..+......
T Consensus 43 ~s~v~~iD~~tg~--------v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~---- 108 (266)
T 2iwa_A 43 RSSVRQVALQTGK--------VENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKD---- 108 (266)
T ss_dssp TCEEEEEETTTCC--------EEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEEEEECCSSS----
T ss_pred CCEEEEEECCCCC--------EEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEEEEECCCCC----
Confidence 5678888875443 3333333222233345554 44444 4456789999999999988887643110
Q ss_pred cCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEec--C---CCeEEEEEcCCCceEEEEeCCCCEEEE
Q 019405 211 FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR--E---TPIKAVAEEPDSFNIYIGNGSGDLASV 285 (341)
Q Consensus 211 ~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~---~~v~~~~~~~~~~~l~~g~~dg~i~iw 285 (341)
. ..+ .+++..++++..++.|.++|..+.+. +..+.-. . ...+.+.|. ++...+....++.|.+.
T Consensus 109 ---g--~gl----t~Dg~~l~vs~gs~~l~viD~~t~~v-~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vI 177 (266)
T 2iwa_A 109 ---G--WGL----ATDGKILYGSDGTSILYEIDPHTFKL-IKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARI 177 (266)
T ss_dssp ---C--CEE----EECSSSEEEECSSSEEEEECTTTCCE-EEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred ---e--EEE----EECCCEEEEECCCCeEEEEECCCCcE-EEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEE
Confidence 1 123 34777777777889999999988664 5554422 1 135678887 67555555568899999
Q ss_pred ECCCCeEEeEEeccc------------cCceeEEEecCCCC-EEEEEeCCCcEEEEEcCCC
Q 019405 286 DIRTGKLLGCFIGKC------------SGSIRSIARHPTLP-IIASCGLDSYLRFWDIKTR 333 (341)
Q Consensus 286 d~~~~~~~~~~~~~~------------~~~i~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~ 333 (341)
|..+++.+..+.... ....+.++|+|+++ +++++...+.|.+.++...
T Consensus 178 D~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 178 SAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp ETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred ECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 999999988886420 13568999999987 5566667788888887654
No 245
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.93 E-value=3.3e-07 Score=71.94 Aligned_cols=168 Identities=11% Similarity=0.028 Sum_probs=117.9
Q ss_pred EEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEE
Q 019405 154 VKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG 233 (341)
Q Consensus 154 v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 233 (341)
++.+..........+.++. +.+..+.+.+|.|+.+|+++++.+..+ ... . .....+++ . .+.+.+..
T Consensus 46 v~~~phd~~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~-~-------~FgeGit~--~-g~~Ly~lt 112 (268)
T 3nok_A 46 IREYPHATNAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RLG-N-------IFAEGLAS--D-GERLYQLT 112 (268)
T ss_dssp EEEEECCTTCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-ECT-T-------CCEEEEEE--C-SSCEEEEE
T ss_pred EEEEcCCCccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CCC-C-------cceeEEEE--e-CCEEEEEE
Confidence 3444433344567888874 667777888899999999999988777 322 1 11234555 2 23444555
Q ss_pred eCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccc-c---CceeEEEe
Q 019405 234 TNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC-S---GSIRSIAR 309 (341)
Q Consensus 234 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~-~---~~i~~~~~ 309 (341)
-.++.+.+||..+.+. +.++..... -..++ ++++.|+.+..++.|.++|..+.+.+.++.... . ..++.+.|
T Consensus 113 w~~~~v~V~D~~Tl~~-~~ti~~~~e-GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~ 188 (268)
T 3nok_A 113 WTEGLLFTWSGMPPQR-ERTTRYSGE-GWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELEC 188 (268)
T ss_dssp SSSCEEEEEETTTTEE-EEEEECSSC-CCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE
T ss_pred ccCCEEEEEECCcCcE-EEEEeCCCc-eeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEE
Confidence 5789999999998764 777765322 23444 567788888889999999999999888876531 1 24567788
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 310 HPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 310 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
. +|..++..-.+..|.+.|.++|+.+..+
T Consensus 189 ~-dG~lyanvw~s~~I~vIDp~TG~V~~~I 217 (268)
T 3nok_A 189 A-NGVIYANIWHSSDVLEIDPATGTVVGVI 217 (268)
T ss_dssp E-TTEEEEEETTCSEEEEECTTTCBEEEEE
T ss_pred e-CCEEEEEECCCCeEEEEeCCCCcEEEEE
Confidence 7 7766665556889999999999998876
No 246
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.92 E-value=1e-06 Score=68.53 Aligned_cols=170 Identities=15% Similarity=0.136 Sum_probs=118.0
Q ss_pred eEEEEEeecCCceEEEEecCCCCEEEEeeCC--CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEE
Q 019405 153 TVKSWNVCASGTIAFSKVDISEKFSLFGGKG--VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF 230 (341)
Q Consensus 153 ~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 230 (341)
-++.+..........+.|++ +.+..+.+.. ..|+.+|+.+++.+..+..... ..-..+++ . ++.+.
T Consensus 11 v~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~--------~fgeGi~~--~-~~~ly 78 (243)
T 3mbr_X 11 VVKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP--------YFGAGIVA--W-RDRLI 78 (243)
T ss_dssp EEEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT--------CCEEEEEE--E-TTEEE
T ss_pred EEEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC--------cceeEEEE--e-CCEEE
Confidence 34455444445678899986 5556666664 4899999999999887765431 11234455 2 34444
Q ss_pred EEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEecccc----CceeE
Q 019405 231 VAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCS----GSIRS 306 (341)
Q Consensus 231 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~----~~i~~ 306 (341)
...-.++.+.+||..+.+. +.++...... ..++ +++..|+++..++.|.++|..+.+.+.++..... ..++.
T Consensus 79 ~ltw~~~~v~v~D~~tl~~-~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNe 154 (243)
T 3mbr_X 79 QLTWRNHEGFVYDLATLTP-RARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNE 154 (243)
T ss_dssp EEESSSSEEEEEETTTTEE-EEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred EEEeeCCEEEEEECCcCcE-EEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCccccccee
Confidence 5556789999999998764 7777654322 3444 5677777777889999999999998888765311 34566
Q ss_pred EEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 307 IARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 307 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
+.|. +|..++..-.+..|.+.|.++|+.+..+
T Consensus 155 Le~~-~G~lyanvw~s~~I~vIDp~tG~V~~~i 186 (243)
T 3mbr_X 155 LEWV-NGELLANVWLTSRIARIDPASGKVVAWI 186 (243)
T ss_dssp EEEE-TTEEEEEETTTTEEEEECTTTCBEEEEE
T ss_pred eEEe-CCEEEEEECCCCeEEEEECCCCCEEEEE
Confidence 7775 6666665556789999999999998875
No 247
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.89 E-value=2e-07 Score=85.61 Aligned_cols=155 Identities=12% Similarity=0.127 Sum_probs=101.6
Q ss_pred EEEEecCCCCEEEEeeCCC-------------eEEEEECCCCce--eeecCCCCCCccCccCCeeeeEEEEEecCCCCEE
Q 019405 166 AFSKVDISEKFSLFGGKGV-------------EVNVWDLDKCEK--IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF 230 (341)
Q Consensus 166 ~~~~~~~~~~~l~~~~~d~-------------~v~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 230 (341)
..++|+ |++.|+.++.+. .|++|++.+... ...+..... ++.+...+.| +|++++|
T Consensus 178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~------~~~~~~~~~~--SpDg~~l 248 (693)
T 3iuj_A 178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPA------QHHRYVGATV--TEDDRFL 248 (693)
T ss_dssp CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGG------GCCSEEEEEE--CTTSCEE
T ss_pred ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCC------CCeEEEEEEE--cCCCCEE
Confidence 467899 999998887774 399999887542 122222110 1134667888 8999988
Q ss_pred EEEeC----CCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEE-EEeCC---CCEEEEECCCCeE--EeEEeccc
Q 019405 231 VAGTN----DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIY-IGNGS---GDLASVDIRTGKL--LGCFIGKC 300 (341)
Q Consensus 231 ~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~g~~d---g~i~iwd~~~~~~--~~~~~~~~ 300 (341)
+.... +..|+++|+.++......+..+....... +++++..|+ ....+ +.|..+|+.++.. ...+..+
T Consensus 249 ~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~- 326 (693)
T 3iuj_A 249 LISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPE- 326 (693)
T ss_dssp EEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC-
T ss_pred EEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecC-
Confidence 65443 35899999987643466677676666555 566665554 44443 5799999987654 2345555
Q ss_pred cCceeEEEecCCCCEEEEEeC-CC--cEEEEEcCCC
Q 019405 301 SGSIRSIARHPTLPIIASCGL-DS--YLRFWDIKTR 333 (341)
Q Consensus 301 ~~~i~~~~~~~~~~~l~s~~~-dg--~v~iwd~~~~ 333 (341)
...+. .|+++++.|+.... ++ .|++||+..+
T Consensus 327 ~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~ 360 (693)
T 3iuj_A 327 RQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK 360 (693)
T ss_dssp CSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred CCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC
Confidence 44444 88999987776654 44 6899998744
No 248
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.87 E-value=1.3e-07 Score=79.27 Aligned_cols=242 Identities=9% Similarity=0.026 Sum_probs=138.4
Q ss_pred CCCeEEEEEecCccCccceeeeccCC-------CCCceeEEEeccCCCCCceEEEEcc--CCeEEE--eeCCCCcchhee
Q 019405 23 LGLIKVIEARGEHGGVPKVVERWGDP-------HSSNCVLAASIDDSQNDPLLAVARK--NGLTDI--LNPLNGDLRVAI 91 (341)
Q Consensus 23 ~g~i~~~~~~~~~~g~~~~~~~~~~~-------~~~~~~~~~s~~~~~~~~~l~~~~~--dg~i~i--w~~~~~~~~~~~ 91 (341)
++.|.+|++... +++.++.-+ ......+++++|++ +|+++.. +..|.+ +|+.+ +.++
T Consensus 95 ~~~VsviD~~T~-----~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk----~lyVan~~~~~~v~V~~iD~~t---v~~i 162 (368)
T 1mda_H 95 TDYVEVFDPVTF-----LPIADIELPDAPRFSVGPRVHIIGNCASSA----CLLFFLFGSSAAAGLSVPGASD---DQLT 162 (368)
T ss_dssp EEEEEEECTTTC-----CEEEEEEETTSCSCCBSCCTTSEEECTTSS----CEEEEECSSSCEEEEEETTTEE---EEEE
T ss_pred CCEEEEEECCCC-----CEEEEEECCCccccccCCCcceEEEcCCCC----EEEEEccCCCCeEEEEEEchhh---ceEE
Confidence 455666666655 455554211 02344677777776 7887764 467999 99976 3444
Q ss_pred eccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceE-----EEEEeecCCceE
Q 019405 92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTV-----KSWNVCASGTIA 166 (341)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v-----~~~~~~~~~~i~ 166 (341)
..- +. ....+.... .+++.+.||.+.+.+++..+.. ++.+ ..+... ..+.
T Consensus 163 ~v~---------~~---~~~~p~g~~-------~~~~~~~dg~~~~vd~~~~~~~----~~~v~~~~t~~i~vg-~~P~- 217 (368)
T 1mda_H 163 KSA---------SC---FHIHPGAAA-------THYLGSCPASLAASDLAAAPAA----AGIVGAQCTGAQNCS-SQAA- 217 (368)
T ss_dssp ECS---------SC---CCCEEEETT-------EEECCCCTTSCEEEECCSSCCC----CEECCCCSCTTSCBC-SCCE-
T ss_pred ECC---------Cc---eEEccCCCe-------EEEEEcCCCCEEEEECcccccc----CCeEEEEeeeeeeCC-CCcc-
Confidence 320 10 122232221 5666677888877776541000 0111 012221 2233
Q ss_pred EEEecCCCCEEEEeeCCCeEEEEECCCCc--eeeecCCCCCC-ccCccCCeeeeEEEEEecCCCCEEEEEeC--------
Q 019405 167 FSKVDISEKFSLFGGKGVEVNVWDLDKCE--KIWTAKPPPKN-SLGIFTPTWFTSAAFLSIDDHRKFVAGTN-------- 235 (341)
Q Consensus 167 ~~~~~~~~~~l~~~~~d~~v~i~d~~~~~--~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-------- 235 (341)
. .+++..++..+. +.|.+.|..... .+..+...... ......+.....+++ ++++++++++..
T Consensus 218 --~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~--s~dg~~lyV~~~~~~~~~~~ 291 (368)
T 1mda_H 218 --Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAK--LKNTDGIMILTVEHSRSCLA 291 (368)
T ss_dssp --E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEE--ETTTTEEEEEEEECSSCTTS
T ss_pred --c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEE--cCCCCEEEEEeccccCcccc
Confidence 2 556666666666 899999986532 22222111000 000000111222677 788888887543
Q ss_pred -CCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCce-EEEEe-CCCCEEEEECCCCeEEeEEeccccCceeEEEecC
Q 019405 236 -DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFN-IYIGN-GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHP 311 (341)
Q Consensus 236 -d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~ 311 (341)
++.+.++|+.+.+. +..+.... ....++|+|+|+. +++.. .++.|.++|+.+++.+.++... ..-..+++.+
T Consensus 292 ~~~~~~ViD~~t~~v-v~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg--~~P~~i~~~~ 366 (368)
T 1mda_H 292 AAENTSSVTASVGQT-SGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD--KGPESLSVQN 366 (368)
T ss_dssp CEEEEEEEESSSCCE-EECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC--SCCCEEECCC
T ss_pred cCCCEEEEECCCCeE-EEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECC--CCCCEEEeec
Confidence 23566999998764 66555443 5788999999974 55555 5899999999999999998764 4455666654
No 249
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.84 E-value=7.8e-07 Score=81.12 Aligned_cols=208 Identities=13% Similarity=0.078 Sum_probs=121.5
Q ss_pred eEEEEccCCeEEEeeCCCCcchheeeccCCCCCCC--CCCce-eeEeeeeccccccccccceeEEEcccceeEEEEeeec
Q 019405 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQP--EDDGI-VGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT 143 (341)
Q Consensus 67 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~ 143 (341)
.|++++.++.|.-+|..+|+.+.++.......... ....+ ..... .++ .++.++.++.+..+|....
T Consensus 68 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--------~v~v~~~dg~l~alD~~tG 137 (668)
T 1kv9_A 68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGD--------KVYVGTLDGRLIALDAKTG 137 (668)
T ss_dssp EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBT--------EEEEECTTSEEEEEETTTC
T ss_pred EEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECC--------EEEEEcCCCEEEEEECCCC
Confidence 57778889999999999999887776421110000 00000 01111 112 6777788888888876543
Q ss_pred ccccccCCceEEEEEeecCCc--eEEEEecC--CCCEEEEeeC------CCeEEEEECCCCceeeecCCCCCCccCc---
Q 019405 144 KVSAESSCSTVKSWNVCASGT--IAFSKVDI--SEKFSLFGGK------GVEVNVWDLDKCEKIWTAKPPPKNSLGI--- 210 (341)
Q Consensus 144 ~~~~~~~~~~v~~~~~~~~~~--i~~~~~~~--~~~~l~~~~~------d~~v~i~d~~~~~~~~~~~~~~~~~~~~--- 210 (341)
+ .+|....... ...+...| .+..++++.. ++.|..+|.++++.++.+..........
T Consensus 138 ~----------~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~ 207 (668)
T 1kv9_A 138 K----------AIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEH 207 (668)
T ss_dssp C----------EEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSS
T ss_pred C----------EeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccc
Confidence 3 2344332110 00001111 1334555443 5899999999999998876421110000
Q ss_pred -------------------cCCeeeeEEEEEecCCCCEEEEEeCCC-------------------eEEEEEcCCCCceeE
Q 019405 211 -------------------FTPTWFTSAAFLSIDDHRKFVAGTNDH-------------------QVRLYDTSAQRRPVM 252 (341)
Q Consensus 211 -------------------~~~~~v~~~~~~~~~~~~~l~~~~~d~-------------------~i~iwd~~~~~~~~~ 252 (341)
........+++ .++..+++.+..++ .|..+|..+++. +-
T Consensus 208 ~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~--d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~-~W 284 (668)
T 1kv9_A 208 PELREAAKTWQGDQYWKLGGGGTVWDSMAY--DPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKL-AW 284 (668)
T ss_dssp HHHHHHHTTCCSSCHHHHCEECCCCSCEEE--ETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCE-EE
T ss_pred cccccccccCCccceeeeCCCCccccceEE--cCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCce-ee
Confidence 00011124567 67778888887776 399999999875 55
Q ss_pred EEEe--cC-------CCeEEEEEcCCCc---eEEEEeCCCCEEEEECCCCeEEeEEe
Q 019405 253 SFDF--RE-------TPIKAVAEEPDSF---NIYIGNGSGDLASVDIRTGKLLGCFI 297 (341)
Q Consensus 253 ~~~~--~~-------~~v~~~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~ 297 (341)
.++. |. .+.....+..+|+ .++.++.+|.++++|..+|+++...+
T Consensus 285 ~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~ 341 (668)
T 1kv9_A 285 HYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEK 341 (668)
T ss_dssp EEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred EeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccc
Confidence 5543 22 2222223334664 68899999999999999999885443
No 250
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.81 E-value=2.6e-05 Score=62.55 Aligned_cols=251 Identities=10% Similarity=-0.021 Sum_probs=135.7
Q ss_pred CCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCC
Q 019405 23 LGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPE 102 (341)
Q Consensus 23 ~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 102 (341)
.+.|..+++.............+.........+++.++.. .++++-..++.|.++++..+.....+.. .
T Consensus 9 ~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~---~ly~~d~~~~~I~~~~~~g~~~~~~~~~--------~ 77 (267)
T 1npe_A 9 TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDK---VVYWTDISEPSIGRASLHGGEPTTIIRQ--------D 77 (267)
T ss_dssp EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTT---EEEEEETTTTEEEEEESSSCCCEEEECT--------T
T ss_pred CCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCC---EEEEEECCCCEEEEEecCCCCcEEEEEC--------C
Confidence 4567777766541110000001111122344566665433 2445555678999999865443222211 1
Q ss_pred CCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeC
Q 019405 103 DDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK 182 (341)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 182 (341)
......+++-+..+. .+++-...+.+.+++++... ....-.........++++|++..|+.+..
T Consensus 78 ~~~p~~ia~d~~~~~-------lyv~d~~~~~I~~~~~~g~~---------~~~~~~~~~~~P~~i~vd~~~g~lyv~~~ 141 (267)
T 1npe_A 78 LGSPEGIALDHLGRT-------IFWTDSQLDRIEVAKMDGTQ---------RRVLFDTGLVNPRGIVTDPVRGNLYWTDW 141 (267)
T ss_dssp CCCEEEEEEETTTTE-------EEEEETTTTEEEEEETTSCS---------CEEEECSSCSSEEEEEEETTTTEEEEEEC
T ss_pred CCCccEEEEEecCCe-------EEEEECCCCEEEEEEcCCCC---------EEEEEECCCCCccEEEEeeCCCEEEEEEC
Confidence 133455555433331 45555556777777653211 11111111245678999997666555443
Q ss_pred ---CCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEE-EEeCCCeEEEEEcCCCCceeEEEEecC
Q 019405 183 ---GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV-AGTNDHQVRLYDTSAQRRPVMSFDFRE 258 (341)
Q Consensus 183 ---d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~ 258 (341)
.+.|..+++.... ...+.... ......+++ ++++..|. +-...+.|.++|...... ...+. ..
T Consensus 142 ~~~~~~I~~~~~dg~~-~~~~~~~~--------~~~P~gia~--d~~~~~lyv~d~~~~~I~~~~~~g~~~-~~~~~-~~ 208 (267)
T 1npe_A 142 NRDNPKIETSHMDGTN-RRILAQDN--------LGLPNGLTF--DAFSSQLCWVDAGTHRAECLNPAQPGR-RKVLE-GL 208 (267)
T ss_dssp CSSSCEEEEEETTSCC-CEEEECTT--------CSCEEEEEE--ETTTTEEEEEETTTTEEEEEETTEEEE-EEEEE-CC
T ss_pred CCCCcEEEEEecCCCC-cEEEEECC--------CCCCcEEEE--cCCCCEEEEEECCCCEEEEEecCCCce-EEEec-CC
Confidence 3688888875322 22221110 133678889 77765554 555668999999875332 22223 22
Q ss_pred CCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCC
Q 019405 259 TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP 314 (341)
Q Consensus 259 ~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 314 (341)
.....++.. .+.++++....+.|..+|..+++.+..+..........+++.|++.
T Consensus 209 ~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 209 QYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp CSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred CCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 334567664 3444444445689999999999998888643122467888888764
No 251
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.79 E-value=1.5e-05 Score=65.85 Aligned_cols=236 Identities=10% Similarity=-0.032 Sum_probs=134.9
Q ss_pred CceEEEEccCCeEEEeeCCCCcchheeeccCCCCC------------CCCCCceeeEeeeeccccccccccceeEEEccc
Q 019405 65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGA------------QPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK 132 (341)
Q Consensus 65 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 132 (341)
+.++.++..++.|..|+..+++. ..+........ ........++.+-+..+ .|+.+...
T Consensus 30 g~~l~v~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g--------~l~v~d~~ 100 (322)
T 2fp8_A 30 NKGFYTSVQDGRVIKYEGPNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN--------QLYIVDCY 100 (322)
T ss_dssp CSSEEEECTTSEEEEECCTTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT--------EEEEEETT
T ss_pred CCEEEEEcCCCeEEEECCCCCce-EEEecccccccccccccccchhccccCCCCceEEEcCCCC--------cEEEEECC
Confidence 44688888899999999875543 22221000000 00012344555432233 55555444
Q ss_pred ceeEEEEeeecccccccCCceEEEEEee----cCCceEEEEecC-CCCEEEEeeC-----------------CCeEEEEE
Q 019405 133 GKASMRSIEVTKVSAESSCSTVKSWNVC----ASGTIAFSKVDI-SEKFSLFGGK-----------------GVEVNVWD 190 (341)
Q Consensus 133 g~~~i~~~~~~~~~~~~~~~~v~~~~~~----~~~~i~~~~~~~-~~~~l~~~~~-----------------d~~v~i~d 190 (341)
+.+..++... +.++.+... .......+++++ +|++.++-.. ++.|..||
T Consensus 101 ~~i~~~d~~~---------g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d 171 (322)
T 2fp8_A 101 YHLSVVGSEG---------GHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYD 171 (322)
T ss_dssp TEEEEECTTC---------EECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEE
T ss_pred CCEEEEeCCC---------CEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEe
Confidence 5455555321 122222111 112467789999 8887665432 36788899
Q ss_pred CCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEE-eCCCeEEEEEcCCCCc-eeEEEEecCCCeEEEEEcC
Q 019405 191 LDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG-TNDHQVRLYDTSAQRR-PVMSFDFRETPIKAVAEEP 268 (341)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~ 268 (341)
..+++........ .....+++ +++++.|+.+ ..++.|.+|++..... ....+..... ...+++.+
T Consensus 172 ~~~~~~~~~~~~~----------~~p~gia~--~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~ 238 (322)
T 2fp8_A 172 PSTKETTLLLKEL----------HVPGGAEV--SADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNA 238 (322)
T ss_dssp TTTTEEEEEEEEE----------SCCCEEEE--CTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECT
T ss_pred CCCCEEEEeccCC----------ccCcceEE--CCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECC
Confidence 8766543221110 12456788 8898866555 5668999999875221 1222222223 67899999
Q ss_pred CCceEEEEeC----------CCCEEEEECCCCeEEeEEeccc---cCceeEEEecCCCCEEEEEeCCCcEEEEEcCCC
Q 019405 269 DSFNIYIGNG----------SGDLASVDIRTGKLLGCFIGKC---SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR 333 (341)
Q Consensus 269 ~~~~l~~g~~----------dg~i~iwd~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 333 (341)
+|.+.++... .+.|..+|. .++.+..+.... ...+..+++ .++.++++...++.|..+++...
T Consensus 239 ~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 239 DGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp TSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred CCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence 9986666544 467888987 477777776431 134667776 46666667667889999998743
No 252
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.79 E-value=8.8e-06 Score=63.93 Aligned_cols=170 Identities=14% Similarity=0.034 Sum_probs=112.9
Q ss_pred eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCC
Q 019405 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP 204 (341)
Q Consensus 125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~ 204 (341)
.+++.+.+|.+.++|++..+. ++.. +.....-..+++.. +++.+..-.++.+.+||..+.+.+.++....
T Consensus 67 Ly~stG~~g~v~~iD~~Tgkv--------~~~~-l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~ 136 (268)
T 3nok_A 67 FFESTGHQGTLRQLSLESAQP--------VWME-RLGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTTRYSG 136 (268)
T ss_dssp EEEEETTTTEEEECCSSCSSC--------SEEE-ECTTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEEEECSS
T ss_pred EEEEcCCCCEEEEEECCCCcE--------EeEE-CCCCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEEeCCC
Confidence 777888888888888865542 2222 22211122345543 2333444568899999999999998887642
Q ss_pred CCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEe--cC---CCeEEEEEcCCCceEEEEeCC
Q 019405 205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF--RE---TPIKAVAEEPDSFNIYIGNGS 279 (341)
Q Consensus 205 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~~---~~v~~~~~~~~~~~l~~g~~d 279 (341)
. -..+++ ++..|+.+..++.|.++|..+.+. +..+.- +. ..++.+.|. +|+..+....+
T Consensus 137 e----------GwGLt~----Dg~~L~vSdGs~~l~~iDp~T~~v-~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s 200 (268)
T 3nok_A 137 E----------GWGLCY----WNGKLVRSDGGTMLTFHEPDGFAL-VGAVQVKLRGQPVELINELECA-NGVIYANIWHS 200 (268)
T ss_dssp C----------CCCEEE----ETTEEEEECSSSEEEEECTTTCCE-EEEEECEETTEECCCEEEEEEE-TTEEEEEETTC
T ss_pred c----------eeEEec----CCCEEEEECCCCEEEEEcCCCCeE-EEEEEeCCCCcccccccccEEe-CCEEEEEECCC
Confidence 1 133444 577777777799999999998764 555443 22 234667776 77655555578
Q ss_pred CCEEEEECCCCeEEeEEecc------------ccCceeEEEecCCCCEEEEEe
Q 019405 280 GDLASVDIRTGKLLGCFIGK------------CSGSIRSIARHPTLPIIASCG 320 (341)
Q Consensus 280 g~i~iwd~~~~~~~~~~~~~------------~~~~i~~~~~~~~~~~l~s~~ 320 (341)
+.|.+.|.++++.+..+... ..+..+.|+++|+++.|+..+
T Consensus 201 ~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 201 SDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp SEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 89999999999998887642 123678899999876555444
No 253
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.78 E-value=5.1e-06 Score=74.26 Aligned_cols=143 Identities=13% Similarity=0.036 Sum_probs=87.7
Q ss_pred CCCC---EEEEeeCCCeEEEEECCCCceeeecCCCCCCc----cCcc---------------CCee-----------eeE
Q 019405 172 ISEK---FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNS----LGIF---------------TPTW-----------FTS 218 (341)
Q Consensus 172 ~~~~---~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~----~~~~---------------~~~~-----------v~~ 218 (341)
.+++ .++.++.+|.++++|.++++.++..+...... .... .... -..
T Consensus 311 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~ 390 (571)
T 2ad6_A 311 VNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGV 390 (571)
T ss_dssp ETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCB
T ss_pred cCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCC
Confidence 3563 56778899999999999999887764322000 0000 0000 023
Q ss_pred EEEEecCCCCEEEEEe-------------------------------------CCCeEEEEEcCCCCceeEEEEecCCCe
Q 019405 219 AAFLSIDDHRKFVAGT-------------------------------------NDHQVRLYDTSAQRRPVMSFDFRETPI 261 (341)
Q Consensus 219 ~~~~~~~~~~~l~~~~-------------------------------------~d~~i~iwd~~~~~~~~~~~~~~~~~v 261 (341)
++| +|+..++++.. .++.|..||..+++. +-.+... .++
T Consensus 391 ~a~--dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~-~W~~~~~-~~~ 466 (571)
T 2ad6_A 391 DSY--DPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKA-KWTKWEK-FAA 466 (571)
T ss_dssp CEE--ETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCE-EEEEEES-SCC
T ss_pred ceE--CCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCE-EEEecCC-CCc
Confidence 566 66666666553 347899999998775 4444432 233
Q ss_pred EEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEE
Q 019405 262 KAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIAS 318 (341)
Q Consensus 262 ~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 318 (341)
....+...+..+++++.|+.|+.+|.++++.+.+++......-.-+.+..+|++++.
T Consensus 467 ~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 467 WGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIG 523 (571)
T ss_dssp CSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred cceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEE
Confidence 332233345577889999999999999999999887541111122445567764443
No 254
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.72 E-value=2.3e-05 Score=61.50 Aligned_cols=171 Identities=12% Similarity=0.035 Sum_probs=109.9
Q ss_pred eeEEEcccc--eeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEe-eCCCeEEEEECCCCceeeecC
Q 019405 125 TLLTCTTKG--KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFG-GKGVEVNVWDLDKCEKIWTAK 201 (341)
Q Consensus 125 ~l~~~~~~g--~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~v~i~d~~~~~~~~~~~ 201 (341)
.+.+.+.+| .+.++|++..+ .+....+. .......+.++++.|... -.++.+.+||..+.+.+.++.
T Consensus 55 LyestG~~g~S~v~~vD~~Tgk--------v~~~~~l~--~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~ 124 (262)
T 3nol_A 55 FYESTGLNGRSSIRKVDIESGK--------TLQQIELG--KRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFN 124 (262)
T ss_dssp EEEEEEETTEEEEEEECTTTCC--------EEEEEECC--TTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEE
T ss_pred EEEECCCCCCceEEEEECCCCc--------EEEEEecC--CccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEE
Confidence 566666655 67777765433 33333332 233222222234455444 457899999999999998887
Q ss_pred CCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEec--C---CCeEEEEEcCCCceEEEE
Q 019405 202 PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR--E---TPIKAVAEEPDSFNIYIG 276 (341)
Q Consensus 202 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~---~~v~~~~~~~~~~~l~~g 276 (341)
.... + ..+++ ++..|+.+..++.|.++|..+.+. +..+.-. . ..++.+.|. +|+..+..
T Consensus 125 ~~~e--------G--~glt~----dg~~L~~SdGs~~i~~iDp~T~~v-~~~I~V~~~g~~~~~lNELe~~-~G~lyan~ 188 (262)
T 3nol_A 125 YDGE--------G--WGLTH----NDQYLIMSDGTPVLRFLDPESLTP-VRTITVTAHGEELPELNELEWV-DGEIFANV 188 (262)
T ss_dssp CSSC--------C--CCEEE----CSSCEEECCSSSEEEEECTTTCSE-EEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred CCCC--------c--eEEec----CCCEEEEECCCCeEEEEcCCCCeE-EEEEEeccCCccccccceeEEE-CCEEEEEE
Confidence 6421 1 23334 667777766688899999998764 5554431 2 234557776 67666555
Q ss_pred eCCCCEEEEECCCCeEEeEEecc-----------ccCceeEEEecCCCCEEEEEeC
Q 019405 277 NGSGDLASVDIRTGKLLGCFIGK-----------CSGSIRSIARHPTLPIIASCGL 321 (341)
Q Consensus 277 ~~dg~i~iwd~~~~~~~~~~~~~-----------~~~~i~~~~~~~~~~~l~s~~~ 321 (341)
..++.|.+.|.++++.+..+... .....+.|+|+|+++.|...+.
T Consensus 189 w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 189 WQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp TTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred ccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 57889999999999998887642 0135688999998887666654
No 255
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.69 E-value=5.3e-05 Score=58.94 Aligned_cols=172 Identities=12% Similarity=0.029 Sum_probs=109.2
Q ss_pred eeEEEcccc--eeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCC
Q 019405 125 TLLTCTTKG--KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKP 202 (341)
Q Consensus 125 ~l~~~~~~g--~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~ 202 (341)
.+.+.+..| .+..+|+...+ .++...+.....-..+++.. +++.+..-.++.+.+||..+.+.+.+++.
T Consensus 33 LyestG~~g~S~v~~vD~~tgk--------v~~~~~l~~~~fgeGi~~~~-~~ly~ltw~~~~v~v~D~~tl~~~~ti~~ 103 (243)
T 3mbr_X 33 LYESTGETGRSSVRKVDLETGR--------ILQRAEVPPPYFGAGIVAWR-DRLIQLTWRNHEGFVYDLATLTPRARFRY 103 (243)
T ss_dssp EEEEECCTTSCEEEEEETTTCC--------EEEEEECCTTCCEEEEEEET-TEEEEEESSSSEEEEEETTTTEEEEEEEC
T ss_pred EEEECCCCCCceEEEEECCCCC--------EEEEEeCCCCcceeEEEEeC-CEEEEEEeeCCEEEEEECCcCcEEEEEeC
Confidence 555555554 67777765433 33333332211112334332 33334445688999999999999988876
Q ss_pred CCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEec--C---CCeEEEEEcCCCceEEEEe
Q 019405 203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR--E---TPIKAVAEEPDSFNIYIGN 277 (341)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~---~~v~~~~~~~~~~~l~~g~ 277 (341)
... + ..++. ++..|+.+..++.|.++|..+.+. +..+.-. . ..++.+.+. +|+..+...
T Consensus 104 ~~~--------G--wglt~----dg~~L~vSdgs~~l~~iDp~t~~~-~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw 167 (243)
T 3mbr_X 104 PGE--------G--WALTS----DDSHLYMSDGTAVIRKLDPDTLQQ-VGSIKVTAGGRPLDNLNELEWV-NGELLANVW 167 (243)
T ss_dssp SSC--------C--CEEEE----CSSCEEEECSSSEEEEECTTTCCE-EEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred CCC--------c--eEEee----CCCEEEEECCCCeEEEEeCCCCeE-EEEEEEccCCcccccceeeEEe-CCEEEEEEC
Confidence 421 1 23444 566677777789999999998764 5555432 1 245566665 666665555
Q ss_pred CCCCEEEEECCCCeEEeEEecc------------ccCceeEEEecCCCCEEEEEeC
Q 019405 278 GSGDLASVDIRTGKLLGCFIGK------------CSGSIRSIARHPTLPIIASCGL 321 (341)
Q Consensus 278 ~dg~i~iwd~~~~~~~~~~~~~------------~~~~i~~~~~~~~~~~l~s~~~ 321 (341)
.+..|.+.|.++++.+..+... ..+..+.|+++|+++.|...+.
T Consensus 168 ~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 168 LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 7889999999999998887632 1235688999998876655553
No 256
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.67 E-value=7e-06 Score=73.49 Aligned_cols=78 Identities=14% Similarity=0.001 Sum_probs=50.0
Q ss_pred CCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCE
Q 019405 236 DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPI 315 (341)
Q Consensus 236 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 315 (341)
+|.|..||+.+++. +-.... ..+...-.....+.+++.++.|+.++.||.++|+.+.+++........-+.+..+|++
T Consensus 452 ~G~l~A~D~~tG~~-~W~~~~-~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~q 529 (599)
T 1w6s_A 452 LGQIKAYNAITGDY-KWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQ 529 (599)
T ss_dssp CEEEEEECTTTCCE-EEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred cCeEEEEECCCCCE-EeEecC-CCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEE
Confidence 47899999998774 444432 2222211122245677889999999999999999999887541112222555567763
No 257
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.60 E-value=1.7e-05 Score=71.06 Aligned_cols=77 Identities=22% Similarity=0.208 Sum_probs=52.1
Q ss_pred CCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeE--EEecCCC
Q 019405 236 DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRS--IARHPTL 313 (341)
Q Consensus 236 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~--~~~~~~~ 313 (341)
+|.|..||+.+++. +-..... .++..-.....+.+++.|+.|+.++.||.++|+.+.+++.. . .+.+ +.+..+|
T Consensus 465 ~G~l~A~D~~tG~~-~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~-~-g~~a~P~~y~~~G 540 (582)
T 1flg_A 465 VGSLRAMDPVSGKV-VWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTG-S-GIVSPPITWEQDG 540 (582)
T ss_dssp SEEEEEECTTTCCE-EEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS-S-CCCSCCEEEEETT
T ss_pred cceEEEEECCCCCE-EEEecCC-CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCC-C-CcccCceEEEECC
Confidence 57899999998875 4444433 22222112224557888999999999999999999998864 2 3322 6676788
Q ss_pred CEE
Q 019405 314 PII 316 (341)
Q Consensus 314 ~~l 316 (341)
++.
T Consensus 541 ~qY 543 (582)
T 1flg_A 541 EQY 543 (582)
T ss_dssp EEE
T ss_pred EEE
Confidence 743
No 258
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.58 E-value=0.00049 Score=64.32 Aligned_cols=250 Identities=10% Similarity=0.037 Sum_probs=145.7
Q ss_pred CceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEc
Q 019405 51 SNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT 130 (341)
Q Consensus 51 ~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 130 (341)
.+.++....++. |..|+.+ -|.+|+..+++... +........+-....+.++. .+..+ .+..++
T Consensus 264 ~i~~i~~d~~g~-----lWigt~~-Gl~~~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~-~D~~g--------~lWigt 327 (795)
T 4a2l_A 264 YIRSLAMDSQNR-----LWIGTFN-DLNIYHEGTDSFAS-YSSNPVENGSLSQRSVRSIF-MDSQG--------GMWLGT 327 (795)
T ss_dssp BEEEEEECTTSC-----EEEEESS-CEEEEETTTTEEEE-ECCCTTSTTSCSSSCEEEEE-ECTTS--------CEEEEE
T ss_pred eEEEEEEcCCCC-----EEEEeCC-hhheEcCCCCeEEE-EecCCCCCCCCCCCcEEEEE-EeCCc--------CEEEEE
Confidence 355454443333 6666655 58889987654322 22110011111223444443 23333 778888
Q ss_pred ccceeEEEEeeecccccccCCceEEEEEee------cCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCC
Q 019405 131 TKGKASMRSIEVTKVSAESSCSTVKSWNVC------ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP 204 (341)
Q Consensus 131 ~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~------~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~ 204 (341)
.++-+..++..... ...+... ....|.++..++++++.+ |+.++-|..||..+++...-.....
T Consensus 328 ~~~Gl~~~~~~~~~---------~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWi-Gt~~~Gl~~~~~~~~~~~~~~~~~~ 397 (795)
T 4a2l_A 328 YFGGLNYYHPIRNR---------FKNIRNIPYKNSLSDNVVSCIVEDKDKNLWI-GTNDGGLNLYNPITQRFTSYTLQED 397 (795)
T ss_dssp SSSCEEEECGGGGS---------SEEECCCTTSSSCSCSSEEEEEECTTSCEEE-EESSSCEEEECTTTCCEEEECCC--
T ss_pred CCCCeEEeCCCccc---------ceEEcCCCCCCCCCCCeeEEEEECCCCCEEE-EECCCCeEEEcCCCCcEEEEecCCC
Confidence 77777777643221 1222110 234688998888877544 6777679999987765433221110
Q ss_pred CCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEe-----cCCCeEEEEEcCCCceEEEEeCC
Q 019405 205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF-----RETPIKAVAEEPDSFNIYIGNGS 279 (341)
Q Consensus 205 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~g~~d 279 (341)
.....+ ....|.++.. .+++.+|..|+.++-|..||..+++ ...+.. ....|.++...++|.+.+. +.
T Consensus 398 ~~~~~l-~~~~v~~i~~--d~~g~~lWigt~~~Gl~~~d~~~~~--~~~~~~~~~~l~~~~v~~i~~d~~g~lwig-t~- 470 (795)
T 4a2l_A 398 ESARGI-GSNNIKAVYV--DEKKSLVYIGTHAGGLSILHRNSGQ--VENFNQRNSQLVNENVYAILPDGEGNLWLG-TL- 470 (795)
T ss_dssp ----CC-SCSCEEEEEE--ETTTTEEEEEETTTEEEEEETTTCC--EEEECTTTSCCSCSCEEEEEECSSSCEEEE-ES-
T ss_pred CcccCC-CCccEEEEEE--cCCCCEEEEEeCcCceeEEeCCCCc--EEEeecCCCCcCCCeeEEEEECCCCCEEEE-ec-
Confidence 000000 1245888887 6777757778887889999988754 333331 2457899998888875554 44
Q ss_pred CCEEEEECCCCeEEeEEec-----cccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCce
Q 019405 280 GDLASVDIRTGKLLGCFIG-----KCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL 335 (341)
Q Consensus 280 g~i~iwd~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 335 (341)
+-|.+||..+++....... .....|.++...++|.+.+... +-|..||..+++.
T Consensus 471 ~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~ 529 (795)
T 4a2l_A 471 SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI 529 (795)
T ss_dssp SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEE
T ss_pred CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE
Confidence 4599999988765432211 1135789999999998766554 4588888876654
No 259
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.53 E-value=7.1e-05 Score=61.79 Aligned_cols=163 Identities=10% Similarity=-0.005 Sum_probs=97.5
Q ss_pred ceEEEEecC-CCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecC-CCCEEEEEeC------
Q 019405 164 TIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTN------ 235 (341)
Q Consensus 164 ~i~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~------ 235 (341)
....+++++ +++ |+.+...+.|..+|..+++............ ......+++ .+ ++++.++-..
T Consensus 81 ~p~gi~~~~~~g~-l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~-----~~~p~~i~~--d~~~G~l~v~d~~~~~~~~ 152 (322)
T 2fp8_A 81 RTYDISYNLQNNQ-LYIVDCYYHLSVVGSEGGHATQLATSVDGVP-----FKWLYAVTV--DQRTGIVYFTDVSTLYDDR 152 (322)
T ss_dssp CEEEEEEETTTTE-EEEEETTTEEEEECTTCEECEEEESEETTEE-----CSCEEEEEE--CTTTCCEEEEESCSSCCTT
T ss_pred CCceEEEcCCCCc-EEEEECCCCEEEEeCCCCEEEEecccCCCCc-----ccccceEEE--ecCCCEEEEECCccccccc
Confidence 467889997 555 4445445568888877553211111100000 123667888 88 8876666432
Q ss_pred -----------CCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEE-eCCCCEEEEECCCCe--EEeEEecccc
Q 019405 236 -----------DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIG-NGSGDLASVDIRTGK--LLGCFIGKCS 301 (341)
Q Consensus 236 -----------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g-~~dg~i~iwd~~~~~--~~~~~~~~~~ 301 (341)
++.|..||..+++ +..+...-.....++++|+++.|+++ ...+.|..|++.... ....+... .
T Consensus 153 ~~~~~~~~~~~~g~v~~~d~~~~~--~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~-~ 229 (322)
T 2fp8_A 153 GVQQIMDTSDKTGRLIKYDPSTKE--TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKI-P 229 (322)
T ss_dssp CHHHHHHHTCCCEEEEEEETTTTE--EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEEC-S
T ss_pred ccceehcccCCCceEEEEeCCCCE--EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeC-C
Confidence 3678888877644 22222222345679999999866655 456889999987421 11112112 2
Q ss_pred CceeEEEecCCCCEEEEEeC----------CCcEEEEEcCCCceeeee
Q 019405 302 GSIRSIARHPTLPIIASCGL----------DSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 302 ~~i~~~~~~~~~~~l~s~~~----------dg~v~iwd~~~~~~~~~~ 339 (341)
+ ...+++.++|.++++... .+.|..+|.. |+.+..+
T Consensus 230 g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~ 275 (322)
T 2fp8_A 230 N-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVI 275 (322)
T ss_dssp S-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEE
T ss_pred C-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEE
Confidence 3 678999999987666544 4567888764 6665544
No 260
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.53 E-value=0.00065 Score=63.46 Aligned_cols=243 Identities=10% Similarity=0.058 Sum_probs=144.1
Q ss_pred CceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEc
Q 019405 51 SNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT 130 (341)
Q Consensus 51 ~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 130 (341)
.|.++....++. |-.|+.++-|..|+..+++.. .+... .....-....+.++.. +..+ .+..|+
T Consensus 311 ~i~~i~~D~~g~-----lWigt~~~Gl~~~~~~~~~~~-~~~~~-~~~~~l~~~~V~~i~~-d~~g--------~lWiGt 374 (795)
T 4a2l_A 311 SVRSIFMDSQGG-----MWLGTYFGGLNYYHPIRNRFK-NIRNI-PYKNSLSDNVVSCIVE-DKDK--------NLWIGT 374 (795)
T ss_dssp CEEEEEECTTSC-----EEEEESSSCEEEECGGGGSSE-EECCC-TTSSSCSCSSEEEEEE-CTTS--------CEEEEE
T ss_pred cEEEEEEeCCcC-----EEEEECCCCeEEeCCCcccce-EEcCC-CCCCCCCCCeeEEEEE-CCCC--------CEEEEE
Confidence 344444444443 777888888999987654322 22211 0001112234544432 2233 677888
Q ss_pred ccceeEEEEeeecccccccCCceEEEEEee--------cCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCC
Q 019405 131 TKGKASMRSIEVTKVSAESSCSTVKSWNVC--------ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKP 202 (341)
Q Consensus 131 ~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~ 202 (341)
.++-+..++.... .+..+... ....|.++..+++++.|..|+.++-|..||..+++...-...
T Consensus 375 ~~~Gl~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~ 445 (795)
T 4a2l_A 375 NDGGLNLYNPITQ---------RFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQR 445 (795)
T ss_dssp SSSCEEEECTTTC---------CEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTT
T ss_pred CCCCeEEEcCCCC---------cEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecC
Confidence 8777777764321 22222211 135688998888888566677777899999987654332211
Q ss_pred CCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEe-------cCCCeEEEEEcCCCceEEE
Q 019405 203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF-------RETPIKAVAEEPDSFNIYI 275 (341)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~ 275 (341)
.. . .....|.++.. .+++.+.+ |+. +.+.+||..+++ ...+.. ....|.++...++|.+.+.
T Consensus 446 ~~-~----l~~~~v~~i~~--d~~g~lwi-gt~-~Gl~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig 514 (795)
T 4a2l_A 446 NS-Q----LVNENVYAILP--DGEGNLWL-GTL-SALVRFNPEQRS--FTTIEKEKDGTPVVSKQITTLFRDSHKRLWIG 514 (795)
T ss_dssp TS-C----CSCSCEEEEEE--CSSSCEEE-EES-SCEEEEETTTTE--EEECCBCTTCCBCCCCCEEEEEECTTCCEEEE
T ss_pred CC-C----cCCCeeEEEEE--CCCCCEEE-Eec-CceeEEeCCCCe--EEEccccccccccCCceEEEEEECCCCCEEEE
Confidence 10 0 11245888887 66676544 444 458889987643 222221 2356899999988876554
Q ss_pred EeCCCCEEEEECCCCeEEeEEe------ccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCce
Q 019405 276 GNGSGDLASVDIRTGKLLGCFI------GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL 335 (341)
Q Consensus 276 g~~dg~i~iwd~~~~~~~~~~~------~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 335 (341)
. . +-|..||..+++. .+. +.....|.++...++|.+.++.. . -|..||..+++.
T Consensus 515 t-~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~~ 574 (795)
T 4a2l_A 515 G-E-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQI 574 (795)
T ss_dssp E-S-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTEE
T ss_pred e-C-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCcE
Confidence 4 4 5689999887765 232 11245799999999998666543 3 588888876543
No 261
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.52 E-value=5.1e-05 Score=69.19 Aligned_cols=236 Identities=13% Similarity=0.029 Sum_probs=122.7
Q ss_pred CceEEEEccCC-----------eEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEc-cc
Q 019405 65 DPLLAVARKNG-----------LTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT-TK 132 (341)
Q Consensus 65 ~~~l~~~~~dg-----------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~ 132 (341)
+++++.|+.+. .+.+||+.+++......... +......+.++..... .++.|+ .+
T Consensus 198 g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~-----~~~~~~~~~~~~~~g~--------lyv~GG~~~ 264 (656)
T 1k3i_A 198 GRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVT-----KHDMFCPGISMDGNGQ--------IVVTGGNDA 264 (656)
T ss_dssp TEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEEC-----SCCCSSCEEEECTTSC--------EEEECSSST
T ss_pred CEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCC-----CCCCccccccCCCCCC--------EEEeCCCCC
Confidence 44777776542 58899998876543222110 0111111122222222 566665 34
Q ss_pred ceeEEEEeeecccccccCCceEEEEEe----ecCCceEEEEecCCCCEEEEee-CC-----CeEEEEECCCCceeeecCC
Q 019405 133 GKASMRSIEVTKVSAESSCSTVKSWNV----CASGTIAFSKVDISEKFSLFGG-KG-----VEVNVWDLDKCEKIWTAKP 202 (341)
Q Consensus 133 g~~~i~~~~~~~~~~~~~~~~v~~~~~----~~~~~i~~~~~~~~~~~l~~~~-~d-----~~v~i~d~~~~~~~~~~~~ 202 (341)
..+.+||.... .|.. .....-.++...+++++++.|+ .+ ..+.+||..+.+-.. +..
T Consensus 265 ~~v~~yd~~t~------------~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~-~~~ 331 (656)
T 1k3i_A 265 KKTSLYDSSSD------------SWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTS-LPN 331 (656)
T ss_dssp TCEEEEEGGGT------------EEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEE-ETT
T ss_pred CceEEecCcCC------------ceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCccee-CCC
Confidence 56777776432 1221 1111223455557899999988 34 469999998765322 111
Q ss_pred CCCCccCccCCeeeeEEEEEecCCCCEEEEEeCC---------CeEEEEEcCCCCceeEEEEecC---------CCeEEE
Q 019405 203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND---------HQVRLYDTSAQRRPVMSFDFRE---------TPIKAV 264 (341)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---------~~i~iwd~~~~~~~~~~~~~~~---------~~v~~~ 264 (341)
.....+... . -. ..+ ..++..++.++.+ ..+..||..+... ......+. ..-.++
T Consensus 332 ~~~~p~~~~--~-~~-~~~--~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w-~~~~~~~~~~~~~~~~~~~~~av 404 (656)
T 1k3i_A 332 AKVNPMLTA--D-KQ-GLY--RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGD-VKSAGKRQSNRGVAPDAMCGNAV 404 (656)
T ss_dssp SCSGGGCCC--C-TT-GGG--TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCE-EEEEEECEETTEECCCCBTCEEE
T ss_pred ccccccccc--c-cc-cee--ecCCceEEEECCCCcEEEecCccceeeeecCCcce-eecCCccccccccCCCCCCCceE
Confidence 100000000 0 00 011 2344444555443 4577888876542 22222111 122445
Q ss_pred EEcC-CCceEEEEeCCC-----------CEEEEECCCCeEEeEE--eccccCc-eeEEEecCCCCEEEEEeCC-------
Q 019405 265 AEEP-DSFNIYIGNGSG-----------DLASVDIRTGKLLGCF--IGKCSGS-IRSIARHPTLPIIASCGLD------- 322 (341)
Q Consensus 265 ~~~~-~~~~l~~g~~dg-----------~i~iwd~~~~~~~~~~--~~~~~~~-i~~~~~~~~~~~l~s~~~d------- 322 (341)
.|.. ++++++.|+.++ .|.+||..+.+..... ..+ ... -.+++..|++++++.|+.+
T Consensus 405 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp-~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~ 483 (656)
T 1k3i_A 405 MYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLY-FARTFHTSVVLPDGSTFITGGQRRGIPFED 483 (656)
T ss_dssp EEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCS-SCCBSCEEEECTTSCEEEECCBSBCCTTCC
T ss_pred eccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCC-CCcccCCeEECCCCCEEEECCcccCcCcCC
Confidence 5543 677888887542 5888888876654332 222 222 2345677899999999865
Q ss_pred ----CcEEEEEcCCCc
Q 019405 323 ----SYLRFWDIKTRQ 334 (341)
Q Consensus 323 ----g~v~iwd~~~~~ 334 (341)
..+.+||..+.+
T Consensus 484 ~~~~~~v~~ydp~t~~ 499 (656)
T 1k3i_A 484 STPVFTPEIYVPEQDT 499 (656)
T ss_dssp CSBCCCCEEEEGGGTE
T ss_pred CCcccceEEEcCCCCc
Confidence 468999987755
No 262
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.52 E-value=0.00033 Score=59.35 Aligned_cols=233 Identities=8% Similarity=-0.052 Sum_probs=130.9
Q ss_pred eEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccc
Q 019405 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS 146 (341)
Q Consensus 67 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~ 146 (341)
+|+.+. ...|+..++........+.. ......+.+-...+. .+++-...+.|..++++..
T Consensus 89 ~l~~~~-~~~I~~i~~~~~~~~~~~~~---------~~~~~gl~~d~~~~~-------ly~~D~~~~~I~r~~~~g~--- 148 (386)
T 3v65_B 89 VLLFAN-RIDIRQVLPHRSEYTLLLNN---------LENAIALDFHHRREL-------VFWSDVTLDRILRANLNGS--- 148 (386)
T ss_dssp EEEEEC-BSCEEEECTTSCCCEEEECS---------CSCEEEEEEETTTTE-------EEEEETTTTEEEEEETTSC---
T ss_pred eeEeec-CccceeeccCCCcEEEEecC---------CCccEEEEEecCCCe-------EEEEeCCCCcEEEEecCCC---
Confidence 455554 46788888876544333322 244566666544431 4445455666666665321
Q ss_pred cccCCceEEEEEeecCCceEEEEecCCCCE-EEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecC
Q 019405 147 AESSCSTVKSWNVCASGTIAFSKVDISEKF-SLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID 225 (341)
Q Consensus 147 ~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 225 (341)
.+..+-.........+++++.+.. .++-...+.|.+.++........+... ......+++ .|
T Consensus 149 ------~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~---------l~~P~giav--dp 211 (386)
T 3v65_B 149 ------NVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQS---------LEKPRAIAL--HP 211 (386)
T ss_dssp ------CEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSS---------CSCEEEEEE--ET
T ss_pred ------CcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCC---------CCCCcEEEE--Ec
Confidence 122221111223456778865444 445555678888887643322222211 123677888 66
Q ss_pred CCCEEEEE-eCC-CeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEe-CCCCEEEEECCCCeEEeEEeccccC
Q 019405 226 DHRKFVAG-TND-HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLGCFIGKCSG 302 (341)
Q Consensus 226 ~~~~l~~~-~~d-~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~ 302 (341)
.+..|+.. ... +.|..+++..... .......-.....++++|++..|+.+. ..+.|..+|+........+... ..
T Consensus 212 ~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~-~~ 289 (386)
T 3v65_B 212 MEGTIYWTDWGNTPRIEASSMDGSGR-RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG-LP 289 (386)
T ss_dssp TTTEEEEEECSSSCEEEEEETTSCSC-EEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSS-CS
T ss_pred CCCeEEEeccCCCCEEEEEeCCCCCc-EEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECC-CC
Confidence 55554444 344 7888888875332 222222334568899998766666554 4577999998643332223222 34
Q ss_pred ceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 303 SIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 303 ~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
....|++ ..+.++++-...+.|..+|..+|+.+..+
T Consensus 290 ~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i 325 (386)
T 3v65_B 290 HPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEII 325 (386)
T ss_dssp SEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred CceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEE
Confidence 5677888 34556666667788999987777765554
No 263
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.49 E-value=0.00023 Score=56.14 Aligned_cols=205 Identities=10% Similarity=0.064 Sum_probs=120.7
Q ss_pred CceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCC
Q 019405 104 DGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKG 183 (341)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 183 (341)
+.+..+.+.+..+. .+++...++.+...+.. . ..++.+..........+++.+++.++++.-.+
T Consensus 27 ~~lSGla~~~~~~~-------L~aV~d~~~~I~~ld~~-g--------~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~ 90 (255)
T 3qqz_A 27 NNISSLTWSAQSNT-------LFSTINKPAAIVEMTTN-G--------DLIRTIPLDFVKDLETIEYIGDNQFVISDERD 90 (255)
T ss_dssp SCEEEEEEETTTTE-------EEEEEETTEEEEEEETT-C--------CEEEEEECSSCSSEEEEEECSTTEEEEEETTT
T ss_pred cCcceeEEeCCCCE-------EEEEECCCCeEEEEeCC-C--------CEEEEEecCCCCChHHeEEeCCCEEEEEECCC
Confidence 45777777654441 44445556666666543 1 13444444333567788888888877766567
Q ss_pred CeEEEEECCCCcee---eecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCC--CCceeEEEEe--
Q 019405 184 VEVNVWDLDKCEKI---WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA--QRRPVMSFDF-- 256 (341)
Q Consensus 184 ~~v~i~d~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~--~~~~~~~~~~-- 256 (341)
+.+.++++.....+ ........ ..........++| +|.++.|.++.......+|.+.. ....+..+..
T Consensus 91 ~~l~~~~v~~~~~i~~~~~~~~~~~---~~~~N~g~EGLA~--d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~ 165 (255)
T 3qqz_A 91 YAIYVISLTPNSEVKILKKIKIPLQ---ESPTNCGFEGLAY--SRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKA 165 (255)
T ss_dssp TEEEEEEECTTCCEEEEEEEECCCS---SCCCSSCCEEEEE--ETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHH
T ss_pred CcEEEEEcCCCCeeeeeeeeccccc---cccccCCcceEEE--eCCCCEEEEEECcCCceEEEEcccccCCceeeecchh
Confidence 88999987654321 22211100 0112244789999 78887777777665556665541 1111222211
Q ss_pred -----cCCCeEEEEEcCCC-ceEEEEeCCCCEEEEECCCCeEEeEEeccc---c-----CceeEEEecCCCCEEEEEeCC
Q 019405 257 -----RETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLLGCFIGKC---S-----GSIRSIARHPTLPIIASCGLD 322 (341)
Q Consensus 257 -----~~~~v~~~~~~~~~-~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~---~-----~~i~~~~~~~~~~~l~s~~~d 322 (341)
+...+.+++++|.. ++++....+..|.++|.. ++.+..+.-.. . ..-..|+|.++|+.+++ ++-
T Consensus 166 ~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~ 243 (255)
T 3qqz_A 166 LQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEP 243 (255)
T ss_dssp HHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETT
T ss_pred hccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCC
Confidence 22356889999965 555666667889999976 55555544220 0 25678999999985555 676
Q ss_pred CcEEEEEcC
Q 019405 323 SYLRFWDIK 331 (341)
Q Consensus 323 g~v~iwd~~ 331 (341)
+.++.|.-.
T Consensus 244 n~~y~f~~~ 252 (255)
T 3qqz_A 244 NRFYRFTPQ 252 (255)
T ss_dssp TEEEEEEC-
T ss_pred ceEEEEEec
Confidence 766666543
No 264
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.46 E-value=0.00043 Score=57.78 Aligned_cols=232 Identities=8% Similarity=-0.032 Sum_probs=129.6
Q ss_pred eEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccc
Q 019405 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS 146 (341)
Q Consensus 67 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~ 146 (341)
+|+.+. ...|+..++........+.. ......+.+-...+. .+++-...+.|..++++...
T Consensus 46 ~ll~~~-~~~I~~i~~~g~~~~~~~~~---------~~~~~~l~~d~~~~~-------ly~~D~~~~~I~r~~~~g~~-- 106 (349)
T 3v64_C 46 VLLFAN-RIDIRQVLPHRSEYTLLLNN---------LENAIALDFHHRREL-------VFWSDVTLDRILRANLNGSN-- 106 (349)
T ss_dssp EEEEEC-BSCEEEECTTSCCEEEEECS---------CSCEEEEEEETTTTE-------EEEEETTTTEEEEEETTSCS--
T ss_pred eeEeec-ccceEEEeCCCCeeEEeecC---------CCceEEEEEeccccE-------EEEEeccCCceEEEecCCCC--
Confidence 455554 45688888865443322222 134556666544431 44444556666666653221
Q ss_pred cccCCceEEEEEeecCCceEEEEecCCCC-EEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecC
Q 019405 147 AESSCSTVKSWNVCASGTIAFSKVDISEK-FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID 225 (341)
Q Consensus 147 ~~~~~~~v~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 225 (341)
+..+-.........+++++.+. +.++-...+.|.+.++........+.... .....+++ .|
T Consensus 107 -------~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l---------~~P~~iav--dp 168 (349)
T 3v64_C 107 -------VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSL---------EKPRAIAL--HP 168 (349)
T ss_dssp -------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTC---------SCEEEEEE--ET
T ss_pred -------ceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCC---------CCcceEEE--ec
Confidence 1111111123346788887544 44555566789999986443222222111 23577888 66
Q ss_pred CCCE-EEEEeCC-CeEEEEEcCCCCceeEEE-EecCCCeEEEEEcCCCceEEEEe-CCCCEEEEECCCCeEEeEEecccc
Q 019405 226 DHRK-FVAGTND-HQVRLYDTSAQRRPVMSF-DFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLGCFIGKCS 301 (341)
Q Consensus 226 ~~~~-l~~~~~d-~~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~ 301 (341)
.+.. +++-..+ +.|..+++..... ..+ ...-.....++++|++..|+.+. ..+.|..+|+........+... .
T Consensus 169 ~~g~ly~td~~~~~~I~r~~~dG~~~--~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~-~ 245 (349)
T 3v64_C 169 MEGTIYWTDWGNTPRIEASSMDGSGR--RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG-L 245 (349)
T ss_dssp TTTEEEEEECSSSCEEEEEETTSCSC--EESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS-C
T ss_pred CcCeEEEeccCCCCEEEEEeCCCCCc--EEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC-C
Confidence 4444 4444444 7888888875332 222 22234568899998776666554 4577999998643322223222 3
Q ss_pred CceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 302 GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 302 ~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
.....+++ .++.++++-...+.|..++..+|+.+..+
T Consensus 246 ~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i 282 (349)
T 3v64_C 246 PHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEII 282 (349)
T ss_dssp SSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred CCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEe
Confidence 45567777 34556666666788888887677665544
No 265
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.33 E-value=0.00079 Score=55.01 Aligned_cols=230 Identities=10% Similarity=-0.020 Sum_probs=117.4
Q ss_pred eeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEccc
Q 019405 53 CVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK 132 (341)
Q Consensus 53 ~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 132 (341)
..+++.+++. ++++-..++.|..||... +....+.. .....++.+-+... .+++....
T Consensus 35 egia~~~~g~----lyv~d~~~~~I~~~d~~g-~~~~~~~~---------~~~p~gia~~~dG~--------l~vad~~~ 92 (306)
T 2p4o_A 35 ENLASAPDGT----IFVTNHEVGEIVSITPDG-NQQIHATV---------EGKVSGLAFTSNGD--------LVATGWNA 92 (306)
T ss_dssp EEEEECTTSC----EEEEETTTTEEEEECTTC-CEEEEEEC---------SSEEEEEEECTTSC--------EEEEEECT
T ss_pred ceEEECCCCC----EEEEeCCCCeEEEECCCC-ceEEEEeC---------CCCceeEEEcCCCc--------EEEEeccC
Confidence 3455555444 666666789999999864 33322221 13344454432222 33333222
Q ss_pred ceeEEEEeeecccccccCCceEEE-EEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCce-eeecCCC-C--CCc
Q 019405 133 GKASMRSIEVTKVSAESSCSTVKS-WNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK-IWTAKPP-P--KNS 207 (341)
Q Consensus 133 g~~~i~~~~~~~~~~~~~~~~v~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~-~~~~~~~-~--~~~ 207 (341)
+...++.+.. .++.+.. ...........++..+++..+++-..++.|..+|..+++. +...... . ...
T Consensus 93 ~~~~v~~~d~-------~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~ 165 (306)
T 2p4o_A 93 DSIPVVSLVK-------SDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSE 165 (306)
T ss_dssp TSCEEEEEEC-------TTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTT
T ss_pred CcceEEEEcC-------CCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCcccccccc
Confidence 2223333221 1222222 2221122233444445554455554678999999876431 2110000 0 000
Q ss_pred cCccCCeeeeEEEEEecCCCCEE-EEEeCCCeEEEEEcCC-CCc-eeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEE
Q 019405 208 LGIFTPTWFTSAAFLSIDDHRKF-VAGTNDHQVRLYDTSA-QRR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLAS 284 (341)
Q Consensus 208 ~~~~~~~~v~~~~~~~~~~~~~l-~~~~~d~~i~iwd~~~-~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~i 284 (341)
-.. .....+ +++++.| ++-...+.|..|++.. ++. ....+... .....++++++|+++++....+.|.+
T Consensus 166 ~~~---~~pngi----s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~-~~P~gi~vd~dG~l~va~~~~~~V~~ 237 (306)
T 2p4o_A 166 SVF---PAANGL----KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-TNIDDFAFDVEGNLYGATHIYNSVVR 237 (306)
T ss_dssp CCS---CSEEEE----EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES-CCCSSEEEBTTCCEEEECBTTCCEEE
T ss_pred CCC---CcCCCc----CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc-CCCCCeEECCCCCEEEEeCCCCeEEE
Confidence 011 113333 3456544 4555678999999874 221 12222211 34567899999987777667889999
Q ss_pred EECCCCeEEe--EEeccccCceeEEEec---CCCCEEEEEeC
Q 019405 285 VDIRTGKLLG--CFIGKCSGSIRSIARH---PTLPIIASCGL 321 (341)
Q Consensus 285 wd~~~~~~~~--~~~~~~~~~i~~~~~~---~~~~~l~s~~~ 321 (341)
+|.. ++... .+... ....++++|. |++..|..++.
T Consensus 238 ~~~~-G~~~~~~~~~~~-~~~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 238 IAPD-RSTTIIAQAEQG-VIGSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp ECTT-CCEEEEECGGGT-CTTEEEEEECCSTTTTTEEEEEEC
T ss_pred ECCC-CCEEEEeecccc-cCCceEEEEecccCCCCEEEEECC
Confidence 9975 65532 23322 3568899998 88776655543
No 266
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.31 E-value=0.00089 Score=55.00 Aligned_cols=236 Identities=9% Similarity=-0.077 Sum_probs=133.4
Q ss_pred eEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccc
Q 019405 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS 146 (341)
Q Consensus 67 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~ 146 (341)
+|+.+. ...|+..++...+....+.. ......+.+-...+. .+++-...+.|..++++.....
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~~~~~~~~---------~~~p~g~~~d~~~~~-------ly~~D~~~~~I~~~~~~g~~~~ 65 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSEYTSLIPN---------LRNVVALDTEVASNR-------IYWSDLSQRMICSTQLDRAHGV 65 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEEEECS---------CSSEEEEEEETTTTE-------EEEEETTTTEEEEEEC------
T ss_pred EEEEEC-CCeEEEEECCCcceEehhcC---------CCceEEEEEEeCCCE-------EEEEECCCCcEEEEECCCCCCC
Confidence 455555 35688899987655443332 244566666443331 5555556677777776531000
Q ss_pred cccCCceEEEEEeecCCceEEEEecCCCC-EEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecC
Q 019405 147 AESSCSTVKSWNVCASGTIAFSKVDISEK-FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID 225 (341)
Q Consensus 147 ~~~~~~~v~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 225 (341)
.....+... .-.....+++++.+. +.++-...+.|.++++........+.... .....+++ .|
T Consensus 66 ----~~~~~~~~~-~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~---------~~P~~iav--dp 129 (316)
T 1ijq_A 66 ----SSYDTVISR-DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENG---------SKPRAIVV--DP 129 (316)
T ss_dssp ------CEEEECS-SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTT---------CCEEEEEE--ET
T ss_pred ----cccEEEEeC-CCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCC---------CCcceEEe--CC
Confidence 001112211 113456788886544 44455667899999987543322222111 23677888 66
Q ss_pred CCCEEEEEeC-C-CeEEEEEcCCCCceeEEEE-ecCCCeEEEEEcCCCceEEEEe-CCCCEEEEECCCCeEEeEE-ec-c
Q 019405 226 DHRKFVAGTN-D-HQVRLYDTSAQRRPVMSFD-FRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLGCF-IG-K 299 (341)
Q Consensus 226 ~~~~l~~~~~-d-~~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~-~~-~ 299 (341)
.+..|+.+.. . +.|..+++.... ...+. ..-.....++++|++..|+.+. ..+.|..+|+.... ...+ .. .
T Consensus 130 ~~g~ly~~d~~~~~~I~~~~~dG~~--~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-~~~~~~~~~ 206 (316)
T 1ijq_A 130 VHGFMYWTDWGTPAKIKKGGLNGVD--IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEK 206 (316)
T ss_dssp TTTEEEEEECSSSCEEEEEETTSCC--EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEECTT
T ss_pred CCCEEEEEccCCCCeEEEEcCCCCC--eEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc-eEEEeecCC
Confidence 5555544443 3 688888876432 33332 2234567899998776666555 45789999986432 2222 21 1
Q ss_pred ccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 300 CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 300 ~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
.......+++. .+.++++-...+.|..++..+|+.+..+
T Consensus 207 ~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 207 RLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL 245 (316)
T ss_dssp TTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred ccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence 12345678875 4556666667788999998877765544
No 267
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.28 E-value=0.001 Score=54.60 Aligned_cols=236 Identities=8% Similarity=-0.064 Sum_probs=129.1
Q ss_pred eEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccc
Q 019405 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS 146 (341)
Q Consensus 67 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~ 146 (341)
+|+.+. ...|+..++........+.. ........+.|....+. .+++-...+.|..++++...
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~-------~~~~~~~~ld~d~~~~~-------lyw~D~~~~~I~r~~~~g~~-- 68 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVV-------GGLEDAAAVDFVFSHGL-------IYWSDVSEEAIKRTEFNKTE-- 68 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEE-------EEEEEEEEEEEEGGGTE-------EEEEETTTTEEEEEETTSSS--
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEe-------cCCCccEEEEEEeCCCE-------EEEEECCCCcEEEEEccCCC--
Confidence 455555 57899999876531111111 00123445555443331 44454555666666543221
Q ss_pred cccCCceEEEEEeecCCceEEEEecCCC-CEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecC
Q 019405 147 AESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID 225 (341)
Q Consensus 147 ~~~~~~~v~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 225 (341)
. ...+... .-.....+++++.+ ++.++-...+.|.++++........+.... .....+++ .|
T Consensus 69 ----~-~~~~~~~-~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~---------~~P~giav--dp 131 (318)
T 3sov_A 69 ----S-VQNVVVS-GLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQEL---------DQPRAIAL--DP 131 (318)
T ss_dssp ----C-CCEEEEE-CCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC---------SSEEEEEE--EG
T ss_pred ----c-eEEEEcC-CCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCC---------CCccEEEE--eC
Confidence 0 0111111 11345578888644 444555566789999986433222221111 23677888 66
Q ss_pred CCCEEEEEe--CCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEe-CCCCEEEEECCCCeEEeEEeccccC
Q 019405 226 DHRKFVAGT--NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLGCFIGKCSG 302 (341)
Q Consensus 226 ~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~ 302 (341)
.+..|+.+. ..+.|...++..... .......-..-..++++|++..|+.+. ..+.|..+|+............ ..
T Consensus 132 ~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~-~~ 209 (318)
T 3sov_A 132 SSGFMYWTDWGEVPKIERAGMDGSSR-FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS-LP 209 (318)
T ss_dssp GGTEEEEEECSSSCEEEEEETTSCSC-EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSC-CS
T ss_pred CCCEEEEEecCCCCEEEEEEcCCCCe-EEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCC-CC
Confidence 555555544 357888888775332 222222233567899999776666554 4678999998643222222222 34
Q ss_pred ceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 303 SIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 303 ~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
....+++. .+.++.+-...+.|..++..+|+.+..+
T Consensus 210 ~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~~~~i 245 (318)
T 3sov_A 210 HPFALTLF-EDILYWTDWSTHSILACNKYTGEGLREI 245 (318)
T ss_dssp CEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred CceEEEEe-CCEEEEEecCCCeEEEEECCCCCceEEE
Confidence 55677775 3345556656788999999888765544
No 268
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.27 E-value=6.1e-05 Score=69.78 Aligned_cols=156 Identities=13% Similarity=0.072 Sum_probs=96.8
Q ss_pred ceEEEEec-CCCCEEEEeeC-C----CeEEEEECCCC-ceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCC
Q 019405 164 TIAFSKVD-ISEKFSLFGGK-G----VEVNVWDLDKC-EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND 236 (341)
Q Consensus 164 ~i~~~~~~-~~~~~l~~~~~-d----~~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 236 (341)
.+...+|+ |||++|+.+.. + .+|+++|+.++ +.+. ... +.....++| +|+++.|+....+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~---~~~--------~~~~~~~~W--spDg~~l~y~~~d 241 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA---DKV--------SGTNGEIVW--GPDHTSLFYVTKD 241 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC---CCE--------EEECSCCEE--CSSTTEEEEEEEC
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC---ccc--------cCceeeEEE--ecCCCEEEEEEEC
Confidence 46778999 99998885433 2 25999999988 5321 100 122346789 8999888777665
Q ss_pred -----CeEEEEEcCCCCce-eEEEEe-cCCCeEEEEEcCCCceEEEEeC---CCCEEEEECCCC--eE-EeEEeccccCc
Q 019405 237 -----HQVRLYDTSAQRRP-VMSFDF-RETPIKAVAEEPDSFNIYIGNG---SGDLASVDIRTG--KL-LGCFIGKCSGS 303 (341)
Q Consensus 237 -----~~i~iwd~~~~~~~-~~~~~~-~~~~v~~~~~~~~~~~l~~g~~---dg~i~iwd~~~~--~~-~~~~~~~~~~~ 303 (341)
..|+++++.++... ...+.. .......+.|+|||++|+.... ...|+++|+.++ +. +..+.......
T Consensus 242 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~ 321 (751)
T 2xe4_A 242 ETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGV 321 (751)
T ss_dssp TTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTC
T ss_pred CCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCc
Confidence 36888888765421 233332 2234667899999998876553 345888999875 22 12332222455
Q ss_pred eeEEEecCCCCEEEEEeCC----CcEEEEEcCC
Q 019405 304 IRSIARHPTLPIIASCGLD----SYLRFWDIKT 332 (341)
Q Consensus 304 i~~~~~~~~~~~l~s~~~d----g~v~iwd~~~ 332 (341)
..++.|+.++.+++....+ ..|..+|+.+
T Consensus 322 ~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 322 RYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp CEEEEEETTTEEEEEECTTTCTTCEEEEEETTS
T ss_pred eEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 6666665545455555444 2566677764
No 269
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.25 E-value=0.00017 Score=62.01 Aligned_cols=155 Identities=10% Similarity=0.064 Sum_probs=97.7
Q ss_pred ceEEEEecC-CCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeC-CC----
Q 019405 164 TIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DH---- 237 (341)
Q Consensus 164 ~i~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-d~---- 237 (341)
....++++| ++..|+.+...+.|+.+|+..++....... . .....+++ ++++++|+++.. ++
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~-~---------~~P~~ia~--d~~G~~lyvad~~~~~~~~ 205 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSG-L---------SKVRTICW--THEADSMIITNDQNNNDRP 205 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECC-C---------SCEEEEEE--CTTSSEEEEEECCSCTTSE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecC-C---------CCcceEEE--eCCCCEEEEEeCCCCcccc
Confidence 346788888 455666655557899999987654433331 1 33678899 889986665544 22
Q ss_pred eEEEEEcCCCCceeEEEEecCCCeEEEEEcC-CCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCE-
Q 019405 238 QVRLYDTSAQRRPVMSFDFRETPIKAVAEEP-DSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPI- 315 (341)
Q Consensus 238 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~- 315 (341)
.+..++..........+.. ......++++| ++.++++-...+.|+.++...+.............-..++|+|++++
T Consensus 206 ~v~~~~~~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~l 284 (430)
T 3tc9_A 206 NNYILTRESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYA 284 (430)
T ss_dssp EEEEEEGGGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEE
T ss_pred eEEEEeCCCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEE
Confidence 3444444332211223332 23457789999 66666666677899999998776533232221245678999999994
Q ss_pred EEEEeCCCcEEEEEcC
Q 019405 316 IASCGLDSYLRFWDIK 331 (341)
Q Consensus 316 l~s~~~dg~v~iwd~~ 331 (341)
+++-...+.|..++..
T Consensus 285 yv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 285 YIVVVNQHYILRSDYD 300 (430)
T ss_dssp EEEETTTTEEEEEEEE
T ss_pred EEEECCCCEEEEEeCC
Confidence 4555567789998765
No 270
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.19 E-value=0.0017 Score=53.31 Aligned_cols=200 Identities=13% Similarity=0.151 Sum_probs=118.9
Q ss_pred ceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccccccc--ceeEEEcc--cceeEEEEee
Q 019405 66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS--RTLLTCTT--KGKASMRSIE 141 (341)
Q Consensus 66 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~--~g~~~i~~~~ 141 (341)
.+++.....+-+.+||+ +|+.+..+.. +.+..+..-+.-.- +... -.+++.-. ++++.+++++
T Consensus 41 s~ii~t~k~~gL~Vydl-~G~~l~~~~~----------g~~nnVD~r~~~~l--~g~~~dla~as~R~~~~n~l~vf~iD 107 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSL-DGKMLHSYNT----------GKLNNVDIRYDFPL--NGKKVDIAAASNRSEGKNTIEIYAID 107 (355)
T ss_dssp CEEEEEETTTEEEEEET-TSCEEEEECC----------SCEEEEEEEEEEEE--TTEEEEEEEEEECSTTCCEEEEEEEC
T ss_pred cEEEEEcCCCCEEEEcC-CCcEEEEccC----------CCcccEEEeccccc--CCceEeEEEEeCCCCCCCeEEEEEEC
Confidence 35666667789999999 8888887754 44554444332100 0000 02233333 5788999874
Q ss_pred ecccccccCCceEEEEE-----eecC-CceEEEEe--cCC-CC-EEEEeeCCCeEEEEECC-------CCceeeecCCCC
Q 019405 142 VTKVSAESSCSTVKSWN-----VCAS-GTIAFSKV--DIS-EK-FSLFGGKGVEVNVWDLD-------KCEKIWTAKPPP 204 (341)
Q Consensus 142 ~~~~~~~~~~~~v~~~~-----~~~~-~~i~~~~~--~~~-~~-~l~~~~~d~~v~i~d~~-------~~~~~~~~~~~~ 204 (341)
-.. +.+.... +... ..+..+++ ++. +. ++++...+|.+..|++. +.+.++++...
T Consensus 108 p~~-------~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg- 179 (355)
T 3amr_A 108 GKN-------GTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN- 179 (355)
T ss_dssp TTT-------CCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-
T ss_pred CCC-------CceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-
Confidence 211 1222220 0111 34555666 664 43 67788888999999883 23555666553
Q ss_pred CCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCC----ceeEEEE-ec-CCCeEEEEE--cCCCc-eEEE
Q 019405 205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR----RPVMSFD-FR-ETPIKAVAE--EPDSF-NIYI 275 (341)
Q Consensus 205 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~----~~~~~~~-~~-~~~v~~~~~--~~~~~-~l~~ 275 (341)
..+..+.. .+....|+.+-++..|..++.+... ..+..+. ++ ...+..|++ .++++ +|++
T Consensus 180 ---------sq~Egcvv--Dd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLiv 248 (355)
T 3amr_A 180 ---------SQTEGMAA--DDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMA 248 (355)
T ss_dssp ---------SCEEEEEE--ETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEE
T ss_pred ---------CCcceEEE--cCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEE
Confidence 23667777 7778899999998777777754211 1232221 11 235777877 45555 6666
Q ss_pred Ee-CCCCEEEEECC-CCeEEeEEe
Q 019405 276 GN-GSGDLASVDIR-TGKLLGCFI 297 (341)
Q Consensus 276 g~-~dg~i~iwd~~-~~~~~~~~~ 297 (341)
++ .++...+||.+ +.+.+..|.
T Consensus 249 SsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 249 SSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp EEGGGTEEEEEESSTTCCEEEEEE
T ss_pred EcCCCCEEEEEECCCCCcEEEEEE
Confidence 66 56789999997 677777775
No 271
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.17 E-value=0.0024 Score=54.35 Aligned_cols=238 Identities=8% Similarity=-0.092 Sum_probs=135.1
Q ss_pred eEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccc
Q 019405 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS 146 (341)
Q Consensus 67 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~ 146 (341)
+|+.+. ...|+..++........+.. ...+..+.+-...+. .+++-...+.|..++++....
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~~---------~~~~~~l~~d~~~~~-------lywsD~~~~~I~~~~~~g~~~- 146 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIPN---------LRNVVALDTEVASNR-------IYWSDLSQRMICSTQLDRAHG- 146 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEECS---------CSCEEEEEEETTTTE-------EEEEETTTTEEEEEEC------
T ss_pred eeEEec-cceeEEEccCCcceeEeccc---------cCcceEEeeeeccCc-------eEEEecCCCeEEEEEcccCCC-
Confidence 455554 57899999876544333322 255666766544441 445545567777666543110
Q ss_pred cccCCceEEEEEeecCCceEEEEecCC-CCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecC
Q 019405 147 AESSCSTVKSWNVCASGTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID 225 (341)
Q Consensus 147 ~~~~~~~v~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 225 (341)
......+.. ........+++++. +++.++-...+.|.+.+++.......+.... .....+++ .|
T Consensus 147 ---~~~~~~~~~-~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~---------~~P~~iav--dp 211 (400)
T 3p5b_L 147 ---VSSYDTVIS-RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENG---------SKPRAIVV--DP 211 (400)
T ss_dssp ----CCCEEEEC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSS---------CCEEEEEE--ET
T ss_pred ---CCcceEEEe-CCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCC---------CCcceEEE--ec
Confidence 000112221 12245678888874 4455555567889999987544333222111 23678888 66
Q ss_pred CCCEEEEEe-C-CCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEe-CCCCEEEEECCCCeEEeEEecc-cc
Q 019405 226 DHRKFVAGT-N-DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLGCFIGK-CS 301 (341)
Q Consensus 226 ~~~~l~~~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~-~~ 301 (341)
.+.+|+... . .+.|...++..... .......-.....|++++++..|+.+. ..+.|..+|+............ .-
T Consensus 212 ~~g~ly~td~~~~~~I~~~~~dG~~~-~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l 290 (400)
T 3p5b_L 212 VHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRL 290 (400)
T ss_dssp TTTEEEEEECSSSCCEEEEETTSCSC-EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTT
T ss_pred ccCeEEEEeCCCCCEEEEEeCCCCcc-EEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCC
Confidence 555555443 2 47888888875432 222222334678999998777776665 4578999998643332222221 02
Q ss_pred CceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 302 GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 302 ~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
....++++. .+.++.+-...+.|..+|..+|+.+..+
T Consensus 291 ~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i 327 (400)
T 3p5b_L 291 AHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL 327 (400)
T ss_dssp SSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEE
T ss_pred CCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEE
Confidence 344567763 3445666667788999998888766554
No 272
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.16 E-value=0.0049 Score=57.47 Aligned_cols=231 Identities=12% Similarity=0.056 Sum_probs=134.0
Q ss_pred EEEEccCCeEEEeeCCCCcchheeeccCC--CCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeeccc
Q 019405 68 LAVARKNGLTDILNPLNGDLRVAISNAGD--SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV 145 (341)
Q Consensus 68 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~ 145 (341)
|-.|+.++-|..++..++... .+..... ....-....+.++.. ...+ .+..|+.++-+..++.....
T Consensus 326 lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~v~~i~~-d~~g--------~lWigt~~~Gl~~~~~~~~~- 394 (781)
T 3v9f_A 326 IWIGTWGGGINFISNAPPTFH-TWSYSPTQMNESSLSNKVVSSVCD-DGQG--------KLWIGTDGGGINVFENGKRV- 394 (781)
T ss_dssp EEEEEBSSCEEEECSSCCSCE-EEC----CCCSSCCSSSCEEEEEE-CTTS--------CEEEEEBSSCEEEEETTEEE-
T ss_pred EEEEecCCeEEEeCCCCCcce-eeccCccccccCCCCCcceEEEEE-cCCC--------CEEEEeCCCcEEEEECCCCe-
Confidence 777887888999988654432 2211000 000112233444432 2223 67777766667777653221
Q ss_pred ccccCCceEEEEE---eecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEE
Q 019405 146 SAESSCSTVKSWN---VCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFL 222 (341)
Q Consensus 146 ~~~~~~~~v~~~~---~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 222 (341)
+..+. ......|.++..++++.+.+ |+.++.|..+|..+++... +..... ....|.++..
T Consensus 395 --------~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~-~~~~~~------~~~~v~~i~~- 457 (781)
T 3v9f_A 395 --------AIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQI-IELEKN------ELLDVRVFYE- 457 (781)
T ss_dssp --------EECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEE-CCSTTT------CCCCEEEEEE-
T ss_pred --------EEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEE-eccCCC------CCCeEEEEEE-
Confidence 11111 11235688888887776555 6666679999987765432 221100 1245788877
Q ss_pred ecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEe-c-----CCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEE
Q 019405 223 SIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF-R-----ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCF 296 (341)
Q Consensus 223 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~-----~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~ 296 (341)
.+++. |..|+. +-|..||..+++ ...+.. . ...|.++...++|.+.+ |+.++-|..||..+++... +
T Consensus 458 -d~~g~-lwigt~-~Gl~~~~~~~~~--~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~-~ 530 (781)
T 3v9f_A 458 -DKNKK-IWIGTH-AGVFVIDLASKK--VIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQLVRK-F 530 (781)
T ss_dssp -CTTSE-EEEEET-TEEEEEESSSSS--CCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCEEEE-E
T ss_pred -CCCCC-EEEEEC-CceEEEeCCCCe--EEecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCeEEE-c
Confidence 66664 555555 568899987644 222221 1 35788999988886554 4554458889987765433 3
Q ss_pred ecc---ccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCc
Q 019405 297 IGK---CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ 334 (341)
Q Consensus 297 ~~~---~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 334 (341)
... ....|.++...++|.+.++.. +|.|..||.++++
T Consensus 531 ~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~ 570 (781)
T 3v9f_A 531 NQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFD 570 (781)
T ss_dssp CTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCC
T ss_pred cCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCc
Confidence 211 135789999988888666554 6655888877654
No 273
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.15 E-value=0.0018 Score=60.03 Aligned_cols=168 Identities=11% Similarity=0.023 Sum_probs=83.1
Q ss_pred EEEEEeecCCceEEEEecCCCCEEEEeeC---CCeEEEEECCCCc-ee--eecCCCCCCccCccCCeeeeEEEEEecCCC
Q 019405 154 VKSWNVCASGTIAFSKVDISEKFSLFGGK---GVEVNVWDLDKCE-KI--WTAKPPPKNSLGIFTPTWFTSAAFLSIDDH 227 (341)
Q Consensus 154 v~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~v~i~d~~~~~-~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 227 (341)
+.++..........+.|+||+++|+..+. ...|.++|+.++. .. ..+.... .....++.| +. +
T Consensus 262 ~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~--------~~~~~s~~~--~~-g 330 (751)
T 2xe4_A 262 VCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPRE--------KGVRYDVQM--HG-T 330 (751)
T ss_dssp EEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCC--------TTCCEEEEE--ET-T
T ss_pred EEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCC--------CCceEEEee--ee-C
Confidence 34554333344667899999998886553 3468889987652 11 2222211 122344444 23 4
Q ss_pred CEEE-EEeCC----CeEEEEEcCCCCceeEE-EEecCC--CeEEEEEcCCCceEEEEeCCCC--EEEEEC-------CCC
Q 019405 228 RKFV-AGTND----HQVRLYDTSAQRRPVMS-FDFRET--PIKAVAEEPDSFNIYIGNGSGD--LASVDI-------RTG 290 (341)
Q Consensus 228 ~~l~-~~~~d----~~i~iwd~~~~~~~~~~-~~~~~~--~v~~~~~~~~~~~l~~g~~dg~--i~iwd~-------~~~ 290 (341)
..|+ ....+ ..|..+|+.+... ... +..+.. .+..+.+. .+.++++...++. |+++|+ ..+
T Consensus 331 ~~l~~~t~~~~a~~~~L~~~d~~~~~~-~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g 408 (751)
T 2xe4_A 331 SHLVILTNEGGAVNHKLLIAPRGQPSD-WSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMADSQDGVFKAG 408 (751)
T ss_dssp TEEEEEECTTTCTTCEEEEEETTSTTC-CCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEECCTTTSCCCTT
T ss_pred CEEEEEeCCCCCCCcEEEEEcCCCccc-ceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEecccccccccCC
Confidence 4444 44333 3677777664221 222 333433 34445554 2345556666665 556675 333
Q ss_pred eEEeEEeccccCceeEEEe----cCCCC-EEEEEeCC---CcEEEEEcCCCc
Q 019405 291 KLLGCFIGKCSGSIRSIAR----HPTLP-IIASCGLD---SYLRFWDIKTRQ 334 (341)
Q Consensus 291 ~~~~~~~~~~~~~i~~~~~----~~~~~-~l~s~~~d---g~v~iwd~~~~~ 334 (341)
+....+.......+..+.+ ++++. ++++.+.. ..+..+|+.+++
T Consensus 409 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 460 (751)
T 2xe4_A 409 TGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS 460 (751)
T ss_dssp TCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred ccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 3123332210122334433 34554 44443332 357777877664
No 274
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.12 E-value=0.0034 Score=53.99 Aligned_cols=157 Identities=8% Similarity=-0.114 Sum_probs=95.0
Q ss_pred ceEEEEecC-CCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEE-EEEeCCCeEEE
Q 019405 164 TIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF-VAGTNDHQVRL 241 (341)
Q Consensus 164 ~i~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~~~~~d~~i~i 241 (341)
....++++| ++.+.++-..++.|+.+|..++.....+..... ..+...++| +|+++.| ++-...+.|+.
T Consensus 229 ~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~-------~~~~~~ia~--dpdG~~LYvad~~~~~I~~ 299 (433)
T 4hw6_A 229 GAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDT-------KGSNFHIVW--HPTGDWAYIIYNGKHCIYR 299 (433)
T ss_dssp SBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSC-------CSSCEEEEE--CTTSSEEEEEETTTTEEEE
T ss_pred CCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCC-------CCCcccEEE--eCCCCEEEEEeCCCCEEEE
Confidence 445678888 666666666678899999987765222211110 012346889 8899844 45556789999
Q ss_pred EEcCC--CCc-eeEEEEec---------------CCCeEEEEE---------cCCCceEEEEeCCCCEEEEECCCCeEEe
Q 019405 242 YDTSA--QRR-PVMSFDFR---------------ETPIKAVAE---------EPDSFNIYIGNGSGDLASVDIRTGKLLG 294 (341)
Q Consensus 242 wd~~~--~~~-~~~~~~~~---------------~~~v~~~~~---------~~~~~~l~~g~~dg~i~iwd~~~~~~~~ 294 (341)
++... +.. ....+.+. -..-..+++ .+++.++++-...+.|+.++. ++...
T Consensus 300 ~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~- 377 (433)
T 4hw6_A 300 VDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVT- 377 (433)
T ss_dssp EEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEE-
T ss_pred EeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEE-
Confidence 88763 211 01222221 113456888 677766666666788999985 56443
Q ss_pred EEeccc-----------------cCceeEEEec-CCCCEEEEEeCCCcEEEEEcC
Q 019405 295 CFIGKC-----------------SGSIRSIARH-PTLPIIASCGLDSYLRFWDIK 331 (341)
Q Consensus 295 ~~~~~~-----------------~~~i~~~~~~-~~~~~l~s~~~dg~v~iwd~~ 331 (341)
++.+.. -.....|+++ +++.++++-...+.|+.++++
T Consensus 378 t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 378 TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 332210 1235678998 566666666667788887764
No 275
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.11 E-value=0.0018 Score=52.93 Aligned_cols=185 Identities=10% Similarity=0.023 Sum_probs=106.7
Q ss_pred eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCC--CeEEEEECCCCceeeecCC
Q 019405 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKG--VEVNVWDLDKCEKIWTAKP 202 (341)
Q Consensus 125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--~~v~i~d~~~~~~~~~~~~ 202 (341)
.+++-..++.+..++.+. +....+.. ......++++++++++++.... ..|..+|..+++.......
T Consensus 45 lyv~d~~~~~I~~~d~~g---------~~~~~~~~--~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~ 113 (306)
T 2p4o_A 45 IFVTNHEVGEIVSITPDG---------NQQIHATV--EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTL 113 (306)
T ss_dssp EEEEETTTTEEEEECTTC---------CEEEEEEC--SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEEC
T ss_pred EEEEeCCCCeEEEECCCC---------ceEEEEeC--CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeC
Confidence 444545667776665421 12333433 4568899999999876655432 2477778777765432221
Q ss_pred CCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEe---------cCCCeEEEEEcCCCceE
Q 019405 203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF---------RETPIKAVAEEPDSFNI 273 (341)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~l 273 (341)
... .....++. .+++..+++-..++.|..+|...++..+..... .-.....+ +|++..|
T Consensus 114 ~~~--------~~~~g~~~--~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~l 181 (306)
T 2p4o_A 114 PDA--------IFLNGITP--LSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFL 181 (306)
T ss_dssp TTC--------SCEEEEEE--SSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEE
T ss_pred CCc--------cccCcccc--cCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEE
Confidence 110 11234444 344444555446888999987653211211110 11123455 7888766
Q ss_pred EEEe-CCCCEEEEECCC-CeE--EeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCce
Q 019405 274 YIGN-GSGDLASVDIRT-GKL--LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL 335 (341)
Q Consensus 274 ~~g~-~dg~i~iwd~~~-~~~--~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 335 (341)
+++. ..+.|..|++.. ++. ...+.. ......++++++|+++++....+.|.++|.. |+.
T Consensus 182 yv~d~~~~~I~~~~~~~~g~~~~~~~~~~--~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~ 244 (306)
T 2p4o_A 182 YVSNTEKMLLLRIPVDSTDKPGEPEIFVE--QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RST 244 (306)
T ss_dssp EEEETTTTEEEEEEBCTTSCBCCCEEEEE--SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCE
T ss_pred EEEeCCCCEEEEEEeCCCCCCCccEEEec--cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCE
Confidence 6554 567899999864 332 111211 1345678999999887777778899999975 654
No 276
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.01 E-value=0.0055 Score=52.64 Aligned_cols=158 Identities=7% Similarity=-0.047 Sum_probs=92.4
Q ss_pred CceEEEEecC-CCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCE-EEEEeCCCeEE
Q 019405 163 GTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRK-FVAGTNDHQVR 240 (341)
Q Consensus 163 ~~i~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-l~~~~~d~~i~ 240 (341)
.....++++| ++.++++-..++.|..++...+.......... ..+...++| +|++++ +++-...+.|.
T Consensus 226 ~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~--------~~~P~gia~--~pdG~~lyv~d~~~~~I~ 295 (430)
T 3tc9_A 226 QNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQD--------SGWEFHIQF--HPSGNYAYIVVVNQHYIL 295 (430)
T ss_dssp SSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSS--------SSCCEEEEE--CTTSSEEEEEETTTTEEE
T ss_pred CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCC--------CCcceeEEE--cCCCCEEEEEECCCCEEE
Confidence 3456788999 66766666677899999998665422211111 133667899 899994 45555678999
Q ss_pred EEEcCCCCce---eEEEEecC---------------CCeE-EEEEc--------CCCceEEEEeCCCCEEEEECCCCeEE
Q 019405 241 LYDTSAQRRP---VMSFDFRE---------------TPIK-AVAEE--------PDSFNIYIGNGSGDLASVDIRTGKLL 293 (341)
Q Consensus 241 iwd~~~~~~~---~~~~~~~~---------------~~v~-~~~~~--------~~~~~l~~g~~dg~i~iwd~~~~~~~ 293 (341)
.++....... ...+.+.. ..-. .++.. +++.+.++=...+.|+.++. +++..
T Consensus 296 ~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~v~ 374 (430)
T 3tc9_A 296 RSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QGRVT 374 (430)
T ss_dssp EEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TSEEE
T ss_pred EEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CCcEE
Confidence 9887642110 12222210 0112 44443 34555555555678888884 56544
Q ss_pred eEEec---------c-------ccCceeEEEecCC-CCEEEEEeCCCcEEEEEcC
Q 019405 294 GCFIG---------K-------CSGSIRSIARHPT-LPIIASCGLDSYLRFWDIK 331 (341)
Q Consensus 294 ~~~~~---------~-------~~~~i~~~~~~~~-~~~l~s~~~dg~v~iwd~~ 331 (341)
..... . .-.....++++|+ +.++++-..+..|+.++++
T Consensus 375 ~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 375 TFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 33321 0 0114678999994 6566666667788887764
No 277
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.01 E-value=0.0013 Score=53.98 Aligned_cols=146 Identities=8% Similarity=0.105 Sum_probs=95.9
Q ss_pred CCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEe--cCCCC---EEEEEeC---CCeEEEEE
Q 019405 172 ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS--IDDHR---KFVAGTN---DHQVRLYD 243 (341)
Q Consensus 172 ~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~---~l~~~~~---d~~i~iwd 243 (341)
|...+++...+.+-+.+||+ +++.+..+.... ++.+...| .-.++ ++++... +++|++|+
T Consensus 38 p~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~g~-----------~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~ 105 (355)
T 3amr_A 38 PQNSKLITTNKKSGLVVYSL-DGKMLHSYNTGK-----------LNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYA 105 (355)
T ss_dssp GGGCEEEEEETTTEEEEEET-TSCEEEEECCSC-----------EEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEE
T ss_pred CCccEEEEEcCCCCEEEEcC-CCcEEEEccCCC-----------cccEEEecccccCCceEeEEEEeCCCCCCCeEEEEE
Confidence 34456666667788999999 888888876432 44444421 11222 2333333 57999998
Q ss_pred cCCCCceeEEEEe------cC-CCeEEEEE--cCC-Cc-eEEEEeCCCCEEEEECC-------CCeEEeEEeccccCcee
Q 019405 244 TSAQRRPVMSFDF------RE-TPIKAVAE--EPD-SF-NIYIGNGSGDLASVDIR-------TGKLLGCFIGKCSGSIR 305 (341)
Q Consensus 244 ~~~~~~~~~~~~~------~~-~~v~~~~~--~~~-~~-~l~~g~~dg~i~iwd~~-------~~~~~~~~~~~~~~~i~ 305 (341)
+.....++..+.. .. ..+..+++ +|. +. ++++...+|.+..|++. +.+++++|... +.+.
T Consensus 106 iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg--sq~E 183 (355)
T 3amr_A 106 IDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN--SQTE 183 (355)
T ss_dssp ECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS--SCEE
T ss_pred ECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC--CCcc
Confidence 7432223444421 11 44566777 774 43 68888889999999882 34677888764 5788
Q ss_pred EEEecCCCCEEEEEeCCCcEEEEEcC
Q 019405 306 SIARHPTLPIIASCGLDSYLRFWDIK 331 (341)
Q Consensus 306 ~~~~~~~~~~l~s~~~dg~v~iwd~~ 331 (341)
.++..+....|..+-+|.-|..++.+
T Consensus 184 gcvvDd~~g~Lyv~eEd~GIw~~da~ 209 (355)
T 3amr_A 184 GMAADDEYGRLYIAEEDEAIWKFSAE 209 (355)
T ss_dssp EEEEETTTTEEEEEETTTEEEEEECS
T ss_pred eEEEcCCCCeEEEecccceEEEEeCC
Confidence 99999988999999998777666754
No 278
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.97 E-value=0.00047 Score=62.87 Aligned_cols=94 Identities=9% Similarity=-0.067 Sum_probs=57.2
Q ss_pred CCCCEEEEEeCCC-----------eEEEEEcCCCCceeEEEE---ecCCC-eEEEEEcCCCceEEEEeCC----------
Q 019405 225 DDHRKFVAGTNDH-----------QVRLYDTSAQRRPVMSFD---FRETP-IKAVAEEPDSFNIYIGNGS---------- 279 (341)
Q Consensus 225 ~~~~~l~~~~~d~-----------~i~iwd~~~~~~~~~~~~---~~~~~-v~~~~~~~~~~~l~~g~~d---------- 279 (341)
.++++++.|+.++ .|.+||..+.. -.... ..... -.+++..|++++++.|+.+
T Consensus 409 ~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~ 486 (656)
T 1k3i_A 409 VKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSP--NTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTP 486 (656)
T ss_dssp TTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCC--EEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSB
T ss_pred CCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCC--eeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCc
Confidence 3677788877542 67788877643 22221 11222 2345667899999998864
Q ss_pred -CCEEEEECCCCeEEeE--EeccccCceeEEEecCCCCEEEEEeC
Q 019405 280 -GDLASVDIRTGKLLGC--FIGKCSGSIRSIARHPTLPIIASCGL 321 (341)
Q Consensus 280 -g~i~iwd~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~s~~~ 321 (341)
..+.+||..+.+.... +... ........+.|++++++.|+.
T Consensus 487 ~~~v~~ydp~t~~W~~~~~~~~~-R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 487 VFTPEIYVPEQDTFYKQNPNSIV-RVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCCCEEEEGGGTEEEECCCCSSC-CCTTEEEEECTTSCEEEEECC
T ss_pred ccceEEEcCCCCceeecCCCCCc-cccccHhhcCCCcEEEecCCC
Confidence 4689999987764321 1111 112233456789999999884
No 279
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.97 E-value=0.0044 Score=50.12 Aligned_cols=235 Identities=12% Similarity=0.080 Sum_probs=142.2
Q ss_pred CCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEee
Q 019405 62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE 141 (341)
Q Consensus 62 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~ 141 (341)
+|..+.+|.-. ..++.|+|+++.+.++..... ..++--.|.+...- -+++ +..+..|+++
T Consensus 75 nP~~~ViALra-g~~LQiFnletK~klks~~~~---------e~VvfWkWis~~~L-------~lVT---~taVyHWs~~ 134 (365)
T 2xzh_A 75 NPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT---------DDVTFWKWISLNTV-------ALVT---DNAVYHWSME 134 (365)
T ss_dssp CSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS---------SCEEEEEECSSSEE-------EEEE---SSEEEEEESS
T ss_pred CCCccEEEEec-CCeEEEechHHhhhhcceecC---------CccEEEEecCCCeE-------EEEc---CCcEEEEccc
Confidence 44445666644 688999999998888777763 45665566555441 2333 4578999985
Q ss_pred ecccccccCCceEEEEEeec---CCceEEEEecCCCCEEEEeeC-------CCeEEEEECCCCceeeecCCCCCCccCcc
Q 019405 142 VTKVSAESSCSTVKSWNVCA---SGTIAFSKVDISEKFSLFGGK-------GVEVNVWDLDKCEKIWTAKPPPKNSLGIF 211 (341)
Q Consensus 142 ~~~~~~~~~~~~v~~~~~~~---~~~i~~~~~~~~~~~l~~~~~-------d~~v~i~d~~~~~~~~~~~~~~~~~~~~~ 211 (341)
. ...++++++... ...|..-..+++.++++..+- .|.+.+|..+.+. .+.+++|...
T Consensus 135 ~-------~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~----- 201 (365)
T 2xzh_A 135 G-------ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAAS----- 201 (365)
T ss_dssp T-------TCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCSEEE-----
T ss_pred C-------CCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccc-cceeeeeeee-----
Confidence 4 334778887533 245667777888888775432 3678899887543 3334444211
Q ss_pred CCeeeeEEEEEecCC-CCEEEEEeC---CCeEEEEEcCCC---Ccee--EEE---Ee---cCCCeEEEEEcCCCceEEEE
Q 019405 212 TPTWFTSAAFLSIDD-HRKFVAGTN---DHQVRLYDTSAQ---RRPV--MSF---DF---RETPIKAVAEEPDSFNIYIG 276 (341)
Q Consensus 212 ~~~~v~~~~~~~~~~-~~~l~~~~~---d~~i~iwd~~~~---~~~~--~~~---~~---~~~~v~~~~~~~~~~~l~~g 276 (341)
...+...-.+. ..+++.+.. .+.+++.++... ..+. +.. -. ..+--.++..++.-..++.-
T Consensus 202 ----F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyvi 277 (365)
T 2xzh_A 202 ----FAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI 277 (365)
T ss_dssp ----EEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEE
T ss_pred ----eEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEE
Confidence 11111100000 112232222 258888888542 1111 111 11 12334577888877788888
Q ss_pred eCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCc
Q 019405 277 NGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ 334 (341)
Q Consensus 277 ~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 334 (341)
+.-|.|++||++++.++..-+-. ..+|..-+-+....-++.....|.|.--.++...
T Consensus 278 TK~G~ihlyDleTgt~i~~nrIS-~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~ 334 (365)
T 2xzh_A 278 TKYGYIHLYDLETGTCIYMNRIS-GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 334 (365)
T ss_dssp ETTSEEEEEETTTCCEEEEEECC-SSCEEEEEEEGGGTEEEEEETTCEEEEEEECTTT
T ss_pred eCCcEEEEEEcccCcEEEEeccC-CCceEEecccCCCCcEEEEcCCCEEEEEEECccc
Confidence 99999999999999999877765 6677766665555556666688877766665443
No 280
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.97 E-value=0.0037 Score=49.21 Aligned_cols=213 Identities=10% Similarity=0.071 Sum_probs=121.6
Q ss_pred ccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccc
Q 019405 45 WGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSR 124 (341)
Q Consensus 45 ~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (341)
+.+-...+.-+++.++.. .++++...++.|...|.. ++.+..+... .....-.+++.....
T Consensus 22 l~g~~~~lSGla~~~~~~---~L~aV~d~~~~I~~ld~~-g~v~~~i~l~-------g~~D~EGIa~~~~g~-------- 82 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSN---TLFSTINKPAAIVEMTTN-GDLIRTIPLD-------FVKDLETIEYIGDNQ-------- 82 (255)
T ss_dssp CTTCCSCEEEEEEETTTT---EEEEEEETTEEEEEEETT-CCEEEEEECS-------SCSSEEEEEECSTTE--------
T ss_pred CCCcccCcceeEEeCCCC---EEEEEECCCCeEEEEeCC-CCEEEEEecC-------CCCChHHeEEeCCCE--------
Confidence 444445677788887643 356667788999999997 8877776541 112344455443222
Q ss_pred eeEEEcccceeEEEEeeecccccccCCceEEEEEe-----ecCCceEEEEecCCCCEEEEeeCCCeEEEEECC---CCce
Q 019405 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV-----CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLD---KCEK 196 (341)
Q Consensus 125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~---~~~~ 196 (341)
.+++.-.++.+.++.+...... ..+..... ........++++|.++.|+++.......+|.+. ....
T Consensus 83 ~~vs~E~~~~l~~~~v~~~~~i-----~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~ 157 (255)
T 3qqz_A 83 FVISDERDYAIYVISLTPNSEV-----KILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNE 157 (255)
T ss_dssp EEEEETTTTEEEEEEECTTCCE-----EEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSC
T ss_pred EEEEECCCCcEEEEEcCCCCee-----eeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCc
Confidence 4455555677777776533210 01122211 223456899999998777777665555555543 1111
Q ss_pred eeecCCCC-CCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecC---------CCeEEEEE
Q 019405 197 IWTAKPPP-KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE---------TPIKAVAE 266 (341)
Q Consensus 197 ~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---------~~v~~~~~ 266 (341)
+..+.... ..... ...+.++++. +..+.+++....++.+.++|... + ++..+.... ..--.|+|
T Consensus 158 l~i~~~~~~~~~~~---~~d~S~l~~d-p~tg~lliLS~~s~~L~~~d~~g-~-~~~~~~L~~g~~~l~~~~~qpEGia~ 231 (255)
T 3qqz_A 158 LHISKDKALQRQFT---LDDVSGAEFN-QQKNTLLVLSHESRALQEVTLVG-E-VIGEMSLTKGSRGLSHNIKQAEGVAM 231 (255)
T ss_dssp CEEEECHHHHHTCC---SSCCCEEEEE-TTTTEEEEEETTTTEEEEECTTC-C-EEEEEECSTTGGGCSSCCCSEEEEEE
T ss_pred eeeecchhhccccc---cCCceeEEEc-CCCCeEEEEECCCCeEEEEcCCC-C-EEEEEEcCCccCCcccccCCCCeeEE
Confidence 11111000 00001 1236788996 34566777777888999999775 3 344444321 24578999
Q ss_pred cCCCceEEEEeCCCCEEEEECC
Q 019405 267 EPDSFNIYIGNGSGDLASVDIR 288 (341)
Q Consensus 267 ~~~~~~l~~g~~dg~i~iwd~~ 288 (341)
.++|+ |+..+..+.++.|...
T Consensus 232 d~~G~-lyIvsE~n~~y~f~~~ 252 (255)
T 3qqz_A 232 DASGN-IYIVSEPNRFYRFTPQ 252 (255)
T ss_dssp CTTCC-EEEEETTTEEEEEEC-
T ss_pred CCCCC-EEEEcCCceEEEEEec
Confidence 99997 5555777777777543
No 281
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.95 E-value=0.0064 Score=51.43 Aligned_cols=217 Identities=9% Similarity=-0.039 Sum_probs=114.2
Q ss_pred ceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcc
Q 019405 52 NCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT 131 (341)
Q Consensus 52 ~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (341)
...++|.+... .++.+-...+.|..+++..+.....+.. .......+++-...+. .+++-..
T Consensus 118 ~~gl~~d~~~~---~ly~~D~~~~~I~r~~~~g~~~~~~~~~--------~~~~p~glavd~~~g~-------lY~~d~~ 179 (386)
T 3v65_B 118 AIALDFHHRRE---LVFWSDVTLDRILRANLNGSNVEEVVST--------GLESPGGLAVDWVHDK-------LYWTDSG 179 (386)
T ss_dssp EEEEEEETTTT---EEEEEETTTTEEEEEETTSCCEEEEECS--------SCSCCCCEEEETTTTE-------EEEEETT
T ss_pred cEEEEEecCCC---eEEEEeCCCCcEEEEecCCCCcEEEEeC--------CCCCccEEEEEeCCCe-------EEEEcCC
Confidence 34455554332 2455555678899998865443222211 0112223333222221 4444445
Q ss_pred cceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEee-CC-CeEEEEECCCCceeeecCCCCCCccC
Q 019405 132 KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG-KG-VEVNVWDLDKCEKIWTAKPPPKNSLG 209 (341)
Q Consensus 132 ~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d-~~v~i~d~~~~~~~~~~~~~~~~~~~ 209 (341)
.+.+.+.+++... ...+.. ..-.....++++|.+..|+... .. +.|..+++............
T Consensus 180 ~~~I~~~~~dg~~--------~~~l~~-~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~------ 244 (386)
T 3v65_B 180 TSRIEVANLDGAH--------RKVLLW-QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTH------ 244 (386)
T ss_dssp TTEEEECBTTSCS--------CEEEEC-SSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSS------
T ss_pred CCeEEEEeCCCCc--------eEEeec-CCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECC------
Confidence 5566555543111 111111 1224567889998766655543 33 67888887643222222111
Q ss_pred ccCCeeeeEEEEEecCCCCEE-EEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECC
Q 019405 210 IFTPTWFTSAAFLSIDDHRKF-VAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR 288 (341)
Q Consensus 210 ~~~~~~v~~~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~ 288 (341)
-.+...+++ ++++..| ++-...+.|..+|+..... ...+.........+++ ..+.++++-...+.|..+|..
T Consensus 245 ---~~~PnGlav--d~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~ 317 (386)
T 3v65_B 245 ---LFWPNGLTI--DYAGRRMYWVDAKHHVIERANLDGSHR-KAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKF 317 (386)
T ss_dssp ---CSCEEEEEE--EGGGTEEEEEETTTTEEEEECTTSCSC-EEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETT
T ss_pred ---CCCeeeEEE--eCCCCEEEEEECCCCEEEEEeCCCCee-EEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECC
Confidence 134678899 6555544 4555667899999875332 2223323345567888 345556666677889999977
Q ss_pred CCeEEeEEeccccCceeEEEe
Q 019405 289 TGKLLGCFIGKCSGSIRSIAR 309 (341)
Q Consensus 289 ~~~~~~~~~~~~~~~i~~~~~ 309 (341)
+++.+..+... ......+++
T Consensus 318 ~G~~~~~i~~~-~~~p~gi~v 337 (386)
T 3v65_B 318 TGKNQEIIRNK-LHFPMDIHT 337 (386)
T ss_dssp TCCSCEEEECS-CSCCCCEEE
T ss_pred CCcceEEEccC-CCCCceEEE
Confidence 77766665543 233344443
No 282
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.95 E-value=0.013 Score=54.66 Aligned_cols=229 Identities=16% Similarity=0.105 Sum_probs=130.4
Q ss_pred EEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeeccccc
Q 019405 68 LAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSA 147 (341)
Q Consensus 68 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~ 147 (341)
|..|+.++-|.+|+..+++... +.. + .......+.++.. ...+ .+..++.++-+..++...
T Consensus 376 lWigt~~~Gl~~~~~~~~~~~~-~~~--~--~~~~~~~v~~i~~-d~~g--------~lWigt~~~Gl~~~~~~~----- 436 (781)
T 3v9f_A 376 LWIGTDGGGINVFENGKRVAIY-NKE--N--RELLSNSVLCSLK-DSEG--------NLWFGTYLGNISYYNTRL----- 436 (781)
T ss_dssp EEEEEBSSCEEEEETTEEEEEC-C---------CCCSBEEEEEE-CTTS--------CEEEEETTEEEEEECSSS-----
T ss_pred EEEEeCCCcEEEEECCCCeEEE-ccC--C--CCCCCcceEEEEE-CCCC--------CEEEEeccCCEEEEcCCC-----
Confidence 7778877779999987543321 111 0 0112244544432 2223 677777666666665421
Q ss_pred ccCCceEEEEEe--ecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecC
Q 019405 148 ESSCSTVKSWNV--CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID 225 (341)
Q Consensus 148 ~~~~~~v~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 225 (341)
+.++.+.. .....|.++..++++.+.+ |+. +-|..||..+++........... . ....|.++.. .+
T Consensus 437 ----~~~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~-~---~~~~i~~i~~--d~ 504 (781)
T 3v9f_A 437 ----KKFQIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQ-L---LENFVRSIAQ--DS 504 (781)
T ss_dssp ----CEEEECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTTTSS-C---SCSCEEEEEE--CT
T ss_pred ----CcEEEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCcccc-c---ccceeEEEEE--cC
Confidence 22333321 1235688888888776555 444 56899998776543322111000 0 1245888887 67
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCceeEEEEe----cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEecc--
Q 019405 226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF----RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK-- 299 (341)
Q Consensus 226 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~-- 299 (341)
++.+ ..|+.++-+..||..+.+ ...+.. ....|.++...++|.+.++ +.+|.+..||..+++.. .+...
T Consensus 505 ~g~l-Wigt~~~Gl~~~~~~~~~--~~~~~~~~~l~~~~i~~i~~d~~g~lWi~-T~~Glv~~~d~~~~~~~-~~~~~~g 579 (781)
T 3v9f_A 505 EGRF-WIGTFGGGVGIYTPDMQL--VRKFNQYEGFCSNTINQIYRSSKGQMWLA-TGEGLVCFPSARNFDYQ-VFQRKEG 579 (781)
T ss_dssp TCCE-EEEESSSCEEEECTTCCE--EEEECTTTTCSCSCEEEEEECTTSCEEEE-ETTEEEEESCTTTCCCE-EECGGGT
T ss_pred CCCE-EEEEcCCCEEEEeCCCCe--EEEccCCCCCCCCeeEEEEECCCCCEEEE-ECCCceEEECCCCCcEE-EccccCC
Confidence 7755 455554457778876532 333432 1346889988888875554 44665588998776532 23211
Q ss_pred -ccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCc
Q 019405 300 -CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ 334 (341)
Q Consensus 300 -~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 334 (341)
....|.++...++|.+.+++ .+| |..+|.++++
T Consensus 580 l~~~~i~~i~~d~~g~lW~~t-~~G-l~~~~~~~~~ 613 (781)
T 3v9f_A 580 LPNTHIRAISEDKNGNIWAST-NTG-ISCYITSKKC 613 (781)
T ss_dssp CSCCCCCEEEECSSSCEEEEC-SSC-EEEEETTTTE
T ss_pred CCCceEEEEEECCCCCEEEEc-CCc-eEEEECCCCc
Confidence 13468889998888766654 444 6777776543
No 283
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.92 E-value=0.0041 Score=50.62 Aligned_cols=160 Identities=11% Similarity=0.096 Sum_probs=103.2
Q ss_pred EEEEecCCCCEEEEee-CCCeEEEEECCCCceeee-cCCCC--CCccCccCCeeeeEEEEEe-cCCCCEEEEEe------
Q 019405 166 AFSKVDISEKFSLFGG-KGVEVNVWDLDKCEKIWT-AKPPP--KNSLGIFTPTWFTSAAFLS-IDDHRKFVAGT------ 234 (341)
Q Consensus 166 ~~~~~~~~~~~l~~~~-~d~~v~i~d~~~~~~~~~-~~~~~--~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~------ 234 (341)
.+++|++....+..++ ..++|..||...+..... +.... .. ....+..+.+.. .|++.++++..
T Consensus 16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~-----~~~~~sGl~~~~~D~~grL~vv~~~~~af~ 90 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGD-----GEQQMSGLSLLTHDNSKRLFAVMKNAKSFN 90 (334)
T ss_dssp SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSC-----CSEEEEEEEESSSSSCCEEEEEEEETTTTC
T ss_pred cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCC-----CcceeeEEEEeccCCCCcEEEEEccccccc
Confidence 4678877666666555 689999999975543322 22211 11 012356777710 15666666543
Q ss_pred -------CCCeEEEEEcC---CCCceeEEEEe--c----------C-CCeEEEEEcCCCceEEEEeCC-CCEEEEECCCC
Q 019405 235 -------NDHQVRLYDTS---AQRRPVMSFDF--R----------E-TPIKAVAEEPDSFNIYIGNGS-GDLASVDIRTG 290 (341)
Q Consensus 235 -------~d~~i~iwd~~---~~~~~~~~~~~--~----------~-~~v~~~~~~~~~~~l~~g~~d-g~i~iwd~~~~ 290 (341)
.+..|..||+. +++. +..... . . .....++..++|+..++++.. +.|..++....
T Consensus 91 ~~g~~~~g~~~v~~~Dl~~~~tg~~-~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~ 169 (334)
T 2p9w_A 91 FADQSSHGASSFHSFNLPLSENSKP-VWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK 169 (334)
T ss_dssp TTSCCSSSCCEEEEEESSCCTTCCC-SEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC
T ss_pred ccccccCCCCEEEEEcCCcCCCCCE-EEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC
Confidence 26789999998 6553 433331 1 1 247789999999999988888 88888887633
Q ss_pred eEEeEEe--c---cccCceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405 291 KLLGCFI--G---KCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (341)
Q Consensus 291 ~~~~~~~--~---~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 332 (341)
.+..+. . ......+.|+++|++..|+....+|.+..+|+.+
T Consensus 170 -~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 170 -TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp -CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred -EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 322221 1 1122367999999999888887799999999874
No 284
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.85 E-value=0.0022 Score=55.11 Aligned_cols=154 Identities=16% Similarity=0.031 Sum_probs=92.4
Q ss_pred eEEEEecCC--CCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCC---C-e
Q 019405 165 IAFSKVDIS--EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND---H-Q 238 (341)
Q Consensus 165 i~~~~~~~~--~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---~-~ 238 (341)
...++++|+ ...|+.+...+.|+.+|..+++........ .....+++ +++++++++.... . .
T Consensus 141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~----------~~P~giav--d~dG~lyVad~~~~~~~~g 208 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNI----------GQCADVNF--TLNGDMVVVDDQSSDTNTG 208 (433)
T ss_dssp CCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCC----------SCEEEEEE--CTTCCEEEEECCSCTTSEE
T ss_pred CceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCC----------CCccEEEE--CCCCCEEEEcCCCCcccce
Confidence 457899984 444554444478999999877655443311 33778899 8899855444321 1 2
Q ss_pred EEEEEcCCCCceeEEEEecCCCeEEEEEcC-CCceEEEEeCCCCEEEEECCCCeEEeEE-eccccCceeEEEecCCCCE-
Q 019405 239 VRLYDTSAQRRPVMSFDFRETPIKAVAEEP-DSFNIYIGNGSGDLASVDIRTGKLLGCF-IGKCSGSIRSIARHPTLPI- 315 (341)
Q Consensus 239 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~- 315 (341)
+..++..........+. .-.....++++| ++.+.++-..++.|+.+|..++.....+ .......-..++|+|+++.
T Consensus 209 v~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~L 287 (433)
T 4hw6_A 209 IYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWA 287 (433)
T ss_dssp EEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEE
T ss_pred EEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEE
Confidence 33333332211112222 223456788999 6655555556788999999877663322 2211223346999999994
Q ss_pred EEEEeCCCcEEEEEcC
Q 019405 316 IASCGLDSYLRFWDIK 331 (341)
Q Consensus 316 l~s~~~dg~v~iwd~~ 331 (341)
+++-...+.|+.++..
T Consensus 288 Yvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 288 YIIYNGKHCIYRVDYN 303 (433)
T ss_dssp EEEETTTTEEEEEEBC
T ss_pred EEEeCCCCEEEEEeCC
Confidence 4455566789998865
No 285
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.80 E-value=0.011 Score=49.28 Aligned_cols=206 Identities=8% Similarity=-0.044 Sum_probs=109.9
Q ss_pred ceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcc
Q 019405 52 NCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT 131 (341)
Q Consensus 52 ~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (341)
...++|.+... .++.+-...+.|..+++..+.....+.. .......+++-...+. .+++-..
T Consensus 75 ~~~l~~d~~~~---~ly~~D~~~~~I~r~~~~g~~~~~~~~~--------~~~~p~glavd~~~g~-------ly~~d~~ 136 (349)
T 3v64_C 75 AIALDFHHRRE---LVFWSDVTLDRILRANLNGSNVEEVVST--------GLESPGGLAVDWVHDK-------LYWTDSG 136 (349)
T ss_dssp EEEEEEETTTT---EEEEEETTTTEEEEEETTSCSCEEEECS--------SCSCCCEEEEETTTTE-------EEEEETT
T ss_pred eEEEEEecccc---EEEEEeccCCceEEEecCCCCceEEEeC--------CCCCccEEEEecCCCe-------EEEEcCC
Confidence 34555554332 2444555678898888865443222211 1122234444322221 4455555
Q ss_pred cceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEe-eCC-CeEEEEECCCCceeeecCCCCCCccC
Q 019405 132 KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFG-GKG-VEVNVWDLDKCEKIWTAKPPPKNSLG 209 (341)
Q Consensus 132 ~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d-~~v~i~d~~~~~~~~~~~~~~~~~~~ 209 (341)
.+.+.+.+++... ...+.. ..-.....++++|.+..|+.. ... +.|..+++..... ..+....
T Consensus 137 ~~~I~~~~~dG~~--------~~~l~~-~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~~~~----- 201 (349)
T 3v64_C 137 TSRIEVANLDGAH--------RKVLLW-QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR-RIIADTH----- 201 (349)
T ss_dssp TTEEEEEETTSCS--------CEEEEC-TTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EESCCSS-----
T ss_pred CCeEEEEcCCCCc--------eEEEEe-CCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc-EEEEECC-----
Confidence 5666666643211 111111 122456789999866655544 334 6788888764322 2221111
Q ss_pred ccCCeeeeEEEEEecCCCCEEE-EEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECC
Q 019405 210 IFTPTWFTSAAFLSIDDHRKFV-AGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR 288 (341)
Q Consensus 210 ~~~~~~v~~~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~ 288 (341)
-.+...+++ ++++..|. +-...+.|..+|+..... ...+.........+++ .++.++++-...+.|..++..
T Consensus 202 ---~~~PnGla~--d~~~~~lY~aD~~~~~I~~~~~dG~~~-~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~ 274 (349)
T 3v64_C 202 ---LFWPNGLTI--DYAGRRMYWVDAKHHVIERANLDGSHR-KAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKF 274 (349)
T ss_dssp ---CSCEEEEEE--ETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETT
T ss_pred ---CCCcceEEE--eCCCCEEEEEECCCCEEEEEeCCCCce-EEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEcc
Confidence 134678899 76555554 445567899999875332 2223223345567887 345555566667889888876
Q ss_pred CCeEEeEEe
Q 019405 289 TGKLLGCFI 297 (341)
Q Consensus 289 ~~~~~~~~~ 297 (341)
+|+.+..+.
T Consensus 275 ~G~~~~~i~ 283 (349)
T 3v64_C 275 TGKNQEIIR 283 (349)
T ss_dssp TCCSCEEEE
T ss_pred CCCccEEec
Confidence 676555444
No 286
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.75 E-value=0.00037 Score=63.87 Aligned_cols=161 Identities=10% Similarity=-0.083 Sum_probs=91.7
Q ss_pred eEEEEecCCC-CEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEe-CC-CeEEE
Q 019405 165 IAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-ND-HQVRL 241 (341)
Q Consensus 165 i~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~d-~~i~i 241 (341)
...+++++.+ +++++-...+.|.++++........+.... .....+++ .|.+.+|+.+. .. +.|..
T Consensus 455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~---------~~P~giav--Dp~~g~ly~td~~~~~~I~~ 523 (699)
T 1n7d_A 455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQG---------SKPRAIVV--DPVHGFMYWTDWGTPAKIKK 523 (699)
T ss_dssp CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSS---------CCCCCEEC--CSSSSCCEECCCSSSCCEEB
T ss_pred cceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCC---------CCcceEEE--ccCCCcEEEcccCCCCeEEE
Confidence 3457777544 444444556789999987543332222111 12456677 66555444433 22 67888
Q ss_pred EEcCCCCceeEEE-EecCCCeEEEEEcCCCceEEEEe-CCCCEEEEECCCCeEEeEEec-cccCceeEEEecCCCCEEEE
Q 019405 242 YDTSAQRRPVMSF-DFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLGCFIG-KCSGSIRSIARHPTLPIIAS 318 (341)
Q Consensus 242 wd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~s 318 (341)
+++..... ..+ ...-.....|+|+|++..|+.+. ..+.|..+++........+.. ........|++..+ .++++
T Consensus 524 ~~~dG~~~--~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywt 600 (699)
T 1n7d_A 524 GGLNGVDI--YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWT 600 (699)
T ss_dssp CCSSSCCC--CEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEE
T ss_pred EeCCCCCe--eEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEE
Confidence 77764322 222 11223456899999765555544 567899999864322222211 00123445666544 45556
Q ss_pred EeCCCcEEEEEcCCCceeeee
Q 019405 319 CGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 319 ~~~dg~v~iwd~~~~~~~~~~ 339 (341)
....+.|..+|..+|+.+..|
T Consensus 601 d~~~~~V~~~d~~~G~~~~~i 621 (699)
T 1n7d_A 601 DIINEAIFSANRLTGSDVNLL 621 (699)
T ss_dssp CSTTTCEEEEETTTEEEEECC
T ss_pred eCCCCeEEEEEccCCCceEEe
Confidence 666789999998888877655
No 287
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.72 E-value=0.029 Score=51.97 Aligned_cols=238 Identities=8% Similarity=-0.097 Sum_probs=128.8
Q ss_pred eEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccc
Q 019405 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS 146 (341)
Q Consensus 67 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~ 146 (341)
+|+.+. ...|+..++........+.. ...+..+.+....+. .+++-...+.|..+++......
T Consensus 397 ~Ll~an-~~~Ir~i~l~~~~~~~l~~~---------~~~~~gl~~d~~~~~-------lY~sD~~~~~I~~~~l~g~~~~ 459 (791)
T 3m0c_C 397 YLFFTN-RHEVRKMTLDRSEYTSLIPN---------LRNVVALDTEVASNR-------IYWSDLSQRMICSTQLDRAHGV 459 (791)
T ss_dssp EEEEEC-BSSEEEECTTSCCCEEEECS---------CSSEEEEEEETTTTE-------EEEEETTTTEEEEEEC------
T ss_pred cccccc-ccceeEeeccCCcceeeecC---------CCceEEEeecccCCe-------eEEeeccceeEEEEeccCCCCC
Confidence 455444 45677777765544333222 244556665443331 4455555566766665432100
Q ss_pred cccCCceEEEEEeecCCceEEEEecCCCCEEE-EeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecC
Q 019405 147 AESSCSTVKSWNVCASGTIAFSKVDISEKFSL-FGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID 225 (341)
Q Consensus 147 ~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 225 (341)
.....+... .......|++++.++.|+ +-...+.|.+.++........+.... .....|++ .|
T Consensus 460 ----~~~~~vi~~-~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l---------~~P~gIaV--Dp 523 (791)
T 3m0c_C 460 ----SSYDTVISR-DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENG---------SKPRAIVV--DP 523 (791)
T ss_dssp ------CEEEECS-SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTT---------CCEEEEEE--ET
T ss_pred ----cceeEEEec-CCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCC---------CCcceEEE--ec
Confidence 001122211 223456788887665444 55567889999987543322222111 23678888 66
Q ss_pred CCCEEEEEe-CC-CeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEe-CCCCEEEEECCCCeEEeEEecc-cc
Q 019405 226 DHRKFVAGT-ND-HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLGCFIGK-CS 301 (341)
Q Consensus 226 ~~~~l~~~~-~d-~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~-~~ 301 (341)
...+|+... .+ +.|...++..... ...+...-.....|++++.+..|+.+. ..+.|..+++........+... .-
T Consensus 524 ~~g~LYwtD~g~~~~I~~~~~dG~~~-~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l 602 (791)
T 3m0c_C 524 VHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRL 602 (791)
T ss_dssp TTTEEEEEECSSSCEEEEEETTSCCE-EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTT
T ss_pred CCCCEEEecCCCCCeEEEEecCCCce-EEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCcc
Confidence 655555443 33 6888888875432 222222335678999998776666654 4567999998644333323221 01
Q ss_pred CceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 302 GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 302 ~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
....+|++.. +.++++-...+.|...|..+|+.+..+
T Consensus 603 ~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 603 AHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp SSEEEEEEET-TEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred CCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCcceEEe
Confidence 2344666643 345555556678888887777665544
No 288
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.67 E-value=0.023 Score=49.35 Aligned_cols=162 Identities=9% Similarity=0.025 Sum_probs=95.1
Q ss_pred ceEEEEecCC-CCEEEEeeCCCeEEEEECC-------CCce-----------eee-cCCCCCCccCccCCeeeeEEEEEe
Q 019405 164 TIAFSKVDIS-EKFSLFGGKGVEVNVWDLD-------KCEK-----------IWT-AKPPPKNSLGIFTPTWFTSAAFLS 223 (341)
Q Consensus 164 ~i~~~~~~~~-~~~l~~~~~d~~v~i~d~~-------~~~~-----------~~~-~~~~~~~~~~~~~~~~v~~~~~~~ 223 (341)
....++++|+ +.++++-..++.|..+|+. ++.. ... +... ...+...++|
T Consensus 248 ~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~--------~~~~p~~ia~-- 317 (496)
T 3kya_A 248 QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIA--------DPSWEFQIFI-- 317 (496)
T ss_dssp CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECS--------SSSCCEEEEE--
T ss_pred CceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecC--------CCCCceEEEE--
Confidence 3457788995 5555566677889999987 4443 001 1111 1244678999
Q ss_pred cCCCCE-EEEEeCCCeEEEEEcCCCCcee---EEEEec---C------------CCeE-EEEEc-------CCCceEEEE
Q 019405 224 IDDHRK-FVAGTNDHQVRLYDTSAQRRPV---MSFDFR---E------------TPIK-AVAEE-------PDSFNIYIG 276 (341)
Q Consensus 224 ~~~~~~-l~~~~~d~~i~iwd~~~~~~~~---~~~~~~---~------------~~v~-~~~~~-------~~~~~l~~g 276 (341)
+|+++. +++-...+.|+.++.......+ ..+-+. . ..-. .+... +++.++++=
T Consensus 318 ~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD 397 (496)
T 3kya_A 318 HPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVD 397 (496)
T ss_dssp CTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEE
T ss_pred cCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEE
Confidence 899995 4455567889997765322111 223221 0 1123 44554 456666665
Q ss_pred eCCCCEEEEECCCCeEEeEEecc--------------c---------cCceeEEEecCC-CCEEEEEeCCCcEEEEEcCC
Q 019405 277 NGSGDLASVDIRTGKLLGCFIGK--------------C---------SGSIRSIARHPT-LPIIASCGLDSYLRFWDIKT 332 (341)
Q Consensus 277 ~~dg~i~iwd~~~~~~~~~~~~~--------------~---------~~~i~~~~~~~~-~~~l~s~~~dg~v~iwd~~~ 332 (341)
.....|+.++ .+|. +.++-+. . -.....|+++++ +.++++=..+..||.++++.
T Consensus 398 ~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~ 475 (496)
T 3kya_A 398 RLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQ 475 (496)
T ss_dssp GGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred CCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCC
Confidence 6678899998 4564 3334321 0 123568999996 76666666778999999876
Q ss_pred Cceee
Q 019405 333 RQLLS 337 (341)
Q Consensus 333 ~~~~~ 337 (341)
..+++
T Consensus 476 ~~~~~ 480 (496)
T 3kya_A 476 EENVA 480 (496)
T ss_dssp CC---
T ss_pred Ccccc
Confidence 55443
No 289
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.67 E-value=0.02 Score=48.38 Aligned_cols=233 Identities=12% Similarity=0.085 Sum_probs=144.8
Q ss_pred CCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEee
Q 019405 62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE 141 (341)
Q Consensus 62 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~ 141 (341)
+|..+.+|.-. ..++.|+|+++.+.++..... ..++--.|.+... +.--.+..+..|+++
T Consensus 74 nP~~~iiALra-g~~lQiFnle~K~klks~~~~---------e~VvfWkWis~~~----------l~lVT~taVyHWsi~ 133 (494)
T 1bpo_A 74 NPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT---------DDVTFWKWISLNT----------VALVTDNAVYHWSME 133 (494)
T ss_dssp CSSSSCEEEEE-TTEEEEEETTTTEEEEEEECS---------SCCCEEEEEETTE----------EEEECSSEEEEEESS
T ss_pred CCCCcEEEEec-CCeEEEEchHHhhhhcceecC---------CCceEEEecCCCe----------EEEEcCCeeEEeccc
Confidence 34444566543 789999999998888777753 4566566666544 222235579999985
Q ss_pred ecccccccCCceEEEEEeec---CCceEEEEecCCCCEEEEee-------CCCeEEEEECCCCceeeecCCCCCCccCcc
Q 019405 142 VTKVSAESSCSTVKSWNVCA---SGTIAFSKVDISEKFSLFGG-------KGVEVNVWDLDKCEKIWTAKPPPKNSLGIF 211 (341)
Q Consensus 142 ~~~~~~~~~~~~v~~~~~~~---~~~i~~~~~~~~~~~l~~~~-------~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~ 211 (341)
. ...++++|+... +..|..-..+++.++++..+ -.|.+.+|..+.+. .+.+++|..
T Consensus 134 ~-------~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa------ 199 (494)
T 1bpo_A 134 G-------ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAA------ 199 (494)
T ss_dssp S-------SCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSEE------
T ss_pred C-------CCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchheeeee------
Confidence 3 334788887533 24567777788888877543 24678899887543 233444321
Q ss_pred CCeeeeEEEEEecC--C-CCEEEEEeC---CCeEEEEEcCCC---Cce--eEEEE---e---cCCCeEEEEEcCCCceEE
Q 019405 212 TPTWFTSAAFLSID--D-HRKFVAGTN---DHQVRLYDTSAQ---RRP--VMSFD---F---RETPIKAVAEEPDSFNIY 274 (341)
Q Consensus 212 ~~~~v~~~~~~~~~--~-~~~l~~~~~---d~~i~iwd~~~~---~~~--~~~~~---~---~~~~v~~~~~~~~~~~l~ 274 (341)
....+.. .. . ..+++.+.. .+.++|.++... ..+ .+... . ..+--.++..++.-..++
T Consensus 200 ---~F~~~~~--~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviy 274 (494)
T 1bpo_A 200 ---SFAQFKM--EGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVF 274 (494)
T ss_dssp ---EEEEEEC--TTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEE
T ss_pred ---eeEEEec--CCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEE
Confidence 1111111 10 0 113333333 268899988543 111 11111 1 123345788888777888
Q ss_pred EEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCc
Q 019405 275 IGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ 334 (341)
Q Consensus 275 ~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 334 (341)
.-+.-|.|++||+.++.++..-+-. ..+|..-+-+....-++.....|.|.--.++...
T Consensus 275 viTK~G~i~lyDleTgt~i~~nrIs-~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 275 LITKYGYIHLYDLETGTCIYMNRIS-GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECC-SSCEEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred EEecCceEEEEecccceeeeeeccc-CCceEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence 8899999999999999999877765 6777776666666666666688877766665543
No 290
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.52 E-value=0.049 Score=49.12 Aligned_cols=234 Identities=7% Similarity=-0.062 Sum_probs=124.3
Q ss_pred eEEEEccCCeEEEeeCCCCc--chheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecc
Q 019405 67 LLAVARKNGLTDILNPLNGD--LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK 144 (341)
Q Consensus 67 ~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~ 144 (341)
+|+-+. ...|+..++.... ...... .......+.+....+. .+++-...+.|..++++...
T Consensus 11 ~~~~~~-~~~I~~i~~~~~~~~~~~~~~---------~~~~~~~ld~~~~~~~-------ly~sD~~~~~I~r~~~~g~~ 73 (619)
T 3s94_A 11 LLLYAN-RRDLRLVDATNGKENATIVVG---------GLEDAAAVDFVFSHGL-------IYWSDVSEEAIKRTEFNKTE 73 (619)
T ss_dssp CEEEEC-SSBEEEECCC---------CB---------CCSCEEEEEEETTTTE-------EEEEETTTTEEEEEEC----
T ss_pred eEEEec-cccEEEEeCCCCcceEEEEEc---------CCCceEEEEEEeCCCE-------EEEEECCCCeEEEEEccCCC
Confidence 344443 6788888886542 111111 1244566666544441 34444445666666654221
Q ss_pred cccccCCceEEEEEeecCCceEEEEecCCCCE-EEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEe
Q 019405 145 VSAESSCSTVKSWNVCASGTIAFSKVDISEKF-SLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS 223 (341)
Q Consensus 145 ~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 223 (341)
....+... .-.....+++++.++. .++-...+.|.+.++........+.... .....+++
T Consensus 74 -------~~~~v~~~-~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l---------~~P~~Iav-- 134 (619)
T 3s94_A 74 -------SVQNVVVS-GLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQEL---------DQPRAIAL-- 134 (619)
T ss_dssp --------CEEEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC---------SCCCCEEE--
T ss_pred -------ceEEEEeC-CCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCC---------CCCceEEE--
Confidence 01111111 1145778999985554 4455567899999987543222221111 22567788
Q ss_pred cCCCCEEEEEeC--CCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEe-CCCCEEEEECCCCeEEeEEeccc
Q 019405 224 IDDHRKFVAGTN--DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLGCFIGKC 300 (341)
Q Consensus 224 ~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~ 300 (341)
.|.+..|..+.. .+.|...++..... .......-.....+++++++..|+.+. ..+.|..+|+..........+.
T Consensus 135 dp~~g~ly~tD~g~~~~I~r~~~dG~~~-~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~- 212 (619)
T 3s94_A 135 DPSSGFMYWTDWGEVPKIERAGMDGSSR-FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS- 212 (619)
T ss_dssp ETTTTEEEEEECSSSCEEEEEETTSCSC-EEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-------
T ss_pred ecCCCeEEEeccCCCCEEEEEECCCCce-EEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC-
Confidence 666555544442 46777777765332 222222334578999998766666554 5678999998654332222212
Q ss_pred cCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 301 SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 301 ~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
.....+|++..+ .++.+-...+.|...|..+|+....+
T Consensus 213 ~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~i 250 (619)
T 3s94_A 213 LPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLREI 250 (619)
T ss_dssp ---CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEEC
T ss_pred CCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEEE
Confidence 223357777655 45555556788999999888765543
No 291
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.44 E-value=0.0053 Score=56.25 Aligned_cols=121 Identities=12% Similarity=0.023 Sum_probs=70.3
Q ss_pred ceEEEEecCCCCEEEEeeC--CCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCC-EEEEEeCCCeEE
Q 019405 164 TIAFSKVDISEKFSLFGGK--GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQVR 240 (341)
Q Consensus 164 ~i~~~~~~~~~~~l~~~~~--d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~~i~ 240 (341)
....++++|.+.+|+.... .+.|..+++.... ...+.... -.+...|++ ++++. ++++-...+.|.
T Consensus 497 ~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~l~~~~--------l~~PnGlav--d~~~~~LY~aD~~~~~I~ 565 (699)
T 1n7d_A 497 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTEN--------IQWPNGITL--DLLSGRLYWVDSKLHSIS 565 (699)
T ss_dssp CCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCEESCSS--------CSSCCCEEE--CTTTCCEEEEETTTTEEE
T ss_pred CcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeEEEeCC--------CCCccEEEE--eccCCEEEEEecCCCeEE
Confidence 4567788886665554432 2577777764322 11111110 133567888 76654 445555677899
Q ss_pred EEEcCCCCceeEEEEe---cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEec
Q 019405 241 LYDTSAQRRPVMSFDF---RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG 298 (341)
Q Consensus 241 iwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 298 (341)
.+++.... ...+.. .......|++..+ .++++....+.|..+|..+++.+..+..
T Consensus 566 ~~d~dG~~--~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~~ 623 (699)
T 1n7d_A 566 SIDVNGGN--RKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLAE 623 (699)
T ss_dssp EECSSSSC--CEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCCT
T ss_pred EEccCCCc--eEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEeec
Confidence 99987533 222221 1122345566544 4555556678999999988888777654
No 292
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=97.42 E-value=0.0067 Score=49.91 Aligned_cols=200 Identities=10% Similarity=0.038 Sum_probs=102.6
Q ss_pred eEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeee--eccccccccccceeEEE-cccceeEEEEeeec
Q 019405 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLF--KRQREESSSRSRTLLTC-TTKGKASMRSIEVT 143 (341)
Q Consensus 67 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~-~~~g~~~i~~~~~~ 143 (341)
++++++.||.|.-.|.++|+.+.+++... ..+....... .... ..++.. +.||.+..++...
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~-------~~p~~~~~~~~~~~~~-------~~~vv~p~~dG~l~a~~~~~- 76 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPEN-------FQPLIEIQEPSRLETY-------ETLIIEPFGDGNIYYFNAHQ- 76 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGG-------SCCSEECCCSCTTTSS-------EEEEECCSTTTEEEEEETTT-
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCc-------cCCcEEecCCccccCC-------cEEEEEECCCCEEEEEECCC-
Confidence 58899999999999999999988877620 0111110000 0011 123232 5788887777532
Q ss_pred ccccccCCceEEEEEeecCCceEE--EEec-----------CCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCc
Q 019405 144 KVSAESSCSTVKSWNVCASGTIAF--SKVD-----------ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGI 210 (341)
Q Consensus 144 ~~~~~~~~~~v~~~~~~~~~~i~~--~~~~-----------~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~ 210 (341)
| ...|.......+.. +... ..+..+++|+.++.+...|+++|+.++.+........ .
T Consensus 77 --------G-~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~-~ 146 (339)
T 2be1_A 77 --------G-LQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGY-F 146 (339)
T ss_dssp --------E-EEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC---
T ss_pred --------C-cEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCccc-c
Confidence 2 23354432221110 1110 1456788999999999999999999999876432100 0
Q ss_pred cCCeeeeEEE---EEecCCCCEEEEEeCCCeEEEEEcCCCCce---eEEEEecCCC--eE-EEEEcCCCceEEEEeCCCC
Q 019405 211 FTPTWFTSAA---FLSIDDHRKFVAGTNDHQVRLYDTSAQRRP---VMSFDFRETP--IK-AVAEEPDSFNIYIGNGSGD 281 (341)
Q Consensus 211 ~~~~~v~~~~---~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~--v~-~~~~~~~~~~l~~g~~dg~ 281 (341)
......|.. +.....+..++.+..+..+.+.+ ++++.- .......... +. .-..+.++.+ +.++.||.
T Consensus 147 -~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~ 223 (339)
T 2be1_A 147 -GSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGASYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKS 223 (339)
T ss_dssp -------------------CCEEEEEEEEEECEECC-TTSCCCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTE
T ss_pred -cccccccccccccccccCCCeEEEecceEEEEEEC-CCCCeEEEecccccccccccccccccccccCCcE-EEECCCCE
Confidence 000000111 00001234666666666666665 333210 1111111000 00 0001124555 45788999
Q ss_pred EEEEECCCCeEEe
Q 019405 282 LASVDIRTGKLLG 294 (341)
Q Consensus 282 i~iwd~~~~~~~~ 294 (341)
|.-+|..+|+.+.
T Consensus 224 v~A~d~~~G~~~W 236 (339)
T 2be1_A 224 LLASDLDFRIARW 236 (339)
T ss_dssp EEEECSTTCCEEE
T ss_pred EEEEECCCCcEEE
Confidence 9999988888765
No 293
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.33 E-value=0.0095 Score=50.13 Aligned_cols=117 Identities=14% Similarity=0.137 Sum_probs=78.0
Q ss_pred ceEEEEecCCCCEEEEeeCCCeEEEEECCCCcee------------eecCCCCCCccCccCCeeeeEEEEEe-cCCCCEE
Q 019405 164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI------------WTAKPPPKNSLGIFTPTWFTSAAFLS-IDDHRKF 230 (341)
Q Consensus 164 ~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~------------~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l 230 (341)
.+..+..+|+|++||..+.. .|.|-.+..+... +.+... ......+..|..+.||| ...+..|
T Consensus 67 ~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~---~~~~~~~s~I~qVlWHPl~~~ds~L 142 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSIQDAFQIFHYSID---EEEVGPKSSIKKVLFHPKSYRDSCI 142 (452)
T ss_dssp TTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHHHHHTTEEEEEEGG---GCC--CCCCEEEEEECTTBGGGCEE
T ss_pred ceeEEEECCCCCEEEEecCC-eEEEEEecCccccCcccccccccceeEEEcC---CcccCCCCceeEEEeccccCCCCeE
Confidence 57889999999999988665 7998888732211 011110 01111246799999954 1245688
Q ss_pred EEEeCCCeEEEEEcCC-CCceeEEEE---------ecCCCeEEEEEcCCCceEEEEe--CCCCEEEE
Q 019405 231 VAGTNDHQVRLYDTSA-QRRPVMSFD---------FRETPIKAVAEEPDSFNIYIGN--GSGDLASV 285 (341)
Q Consensus 231 ~~~~~d~~i~iwd~~~-~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~~g~--~dg~i~iw 285 (341)
++-..|+.|++||+.. ...|. .+. .....|.+++|.+++-.|++.+ .+|.|+-.
T Consensus 143 VVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 143 VVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred EEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 9999999999999986 23333 332 1225788999999887777755 77888765
No 294
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.31 E-value=0.14 Score=49.71 Aligned_cols=274 Identities=8% Similarity=-0.009 Sum_probs=135.0
Q ss_pred CCCeEEEEEecCccCccceeeeccCCCCCceeEEEecc--CCCCCceEEEEcc-CCeEEEeeCCCCcchheeeccCCCCC
Q 019405 23 LGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASID--DSQNDPLLAVARK-NGLTDILNPLNGDLRVAISNAGDSGA 99 (341)
Q Consensus 23 ~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~--~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~ 99 (341)
.|.+..+++.+. . .....+. .-+..+.|+++.+. +...++++++|.. |++|+|+++.+.+.+......
T Consensus 531 g~~l~~fel~~~--~-L~~~~~~-~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~----- 601 (1158)
T 3ei3_A 531 GRALYYLQIHPQ--E-LRQISHT-EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLG----- 601 (1158)
T ss_dssp TTEEEEEEEETT--E-EEEEEEE-ECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECC-----
T ss_pred CCEEEEEEeeCC--c-eeeeccc-CCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECC-----
Confidence 455666666643 1 1111121 23456788877643 3334678999996 999999999865444322210
Q ss_pred CCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEE
Q 019405 100 QPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLF 179 (341)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~ 179 (341)
......++....-.+ ..+|..+..||.+.-+.++... +.- ...+..... ..++.-..+...+..-+.
T Consensus 602 --~~~~p~si~l~~~~~------~~~L~igl~dG~l~~~~~d~~t---g~l-~d~r~~~LG-~~pv~L~~~~~~~~~~V~ 668 (1158)
T 3ei3_A 602 --GEIIPRSILMTTFES------SHYLLCALGDGALFYFGLNIET---GLL-SDRKKVTLG-TQPTVLRTFRSLSTTNVF 668 (1158)
T ss_dssp --SSCCEEEEEEEEETT------EEEEEEEETTSEEEEEEECTTT---CCE-EEEEEEECC-SSCCEEEEEESSSCEEEE
T ss_pred --CCCCCcEEEEEEeCC------CcEEEEEeCCCeEEEEEEcCCC---Ccc-ccceeEEcC-CCceEEEEEeeCCceeEE
Confidence 111222333322211 1278899999998777654311 000 001111111 223333333333332222
Q ss_pred eeCCCeEEEEECCCCceeee-cCCCCCCccCccCCeeee-EEEEEecCC-CCEEEEEeCCCeEEEEEcCCCCc-eeEEEE
Q 019405 180 GGKGVEVNVWDLDKCEKIWT-AKPPPKNSLGIFTPTWFT-SAAFLSIDD-HRKFVAGTNDHQVRLYDTSAQRR-PVMSFD 255 (341)
Q Consensus 180 ~~~d~~v~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~v~-~~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~ 255 (341)
+..+....+|.-+ ++.... +... .+. ...|. +.. .+-++..+ ++.++|..+..... +++++.
T Consensus 669 a~s~rp~liy~~~-~~l~~s~l~~~-----------~v~~~~~F~-se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ip 734 (1158)
T 3ei3_A 669 ACSDRPTVIYSSN-HKLVFSNVNLK-----------EVNYMCPLN-SDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVP 734 (1158)
T ss_dssp EESSSCEEEEESS-SSEEEEEBSSS-----------CCCEEEEEC-CSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEE
T ss_pred EECCCCEEEEEcC-CceEEeccChH-----------HhceEeccC-cccCCCcEEEEc-CCceEEEEecccCCeeEEEEe
Confidence 2223334444432 222211 1111 122 22342 211 23344333 45688888764322 234443
Q ss_pred ecCCCeEEEEEcCCCceEEEEeCC-------------------------------------------------CCEEEEE
Q 019405 256 FRETPIKAVAEEPDSFNIYIGNGS-------------------------------------------------GDLASVD 286 (341)
Q Consensus 256 ~~~~~v~~~~~~~~~~~l~~g~~d-------------------------------------------------g~i~iwd 286 (341)
-. ..+..++++|+.+.++++..+ +.|++.|
T Consensus 735 L~-~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lid 813 (1158)
T 3ei3_A 735 LY-ESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIID 813 (1158)
T ss_dssp CS-SEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEE
T ss_pred CC-CCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEe
Confidence 33 466778888766655443211 2377888
Q ss_pred CCCCeEEeEEeccccCceeEEE---ecCC-CCEEEEEe----------CCCcEEEEEcCCC
Q 019405 287 IRTGKLLGCFIGKCSGSIRSIA---RHPT-LPIIASCG----------LDSYLRFWDIKTR 333 (341)
Q Consensus 287 ~~~~~~~~~~~~~~~~~i~~~~---~~~~-~~~l~s~~----------~dg~v~iwd~~~~ 333 (341)
..+++.+..+.-.....+.+++ |..+ ..+|+.|. ..|.|++|++..+
T Consensus 814 p~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~ 874 (1158)
T 3ei3_A 814 QHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDG 874 (1158)
T ss_dssp TTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETT
T ss_pred CCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECC
Confidence 8888877666543234455554 4333 35777775 3478999998743
No 295
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.29 E-value=0.048 Score=44.06 Aligned_cols=146 Identities=12% Similarity=0.048 Sum_probs=77.3
Q ss_pred CCCEEEEeeCC-----CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCC-----CeEEEE
Q 019405 173 SEKFSLFGGKG-----VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-----HQVRLY 242 (341)
Q Consensus 173 ~~~~l~~~~~d-----~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-----~~i~iw 242 (341)
++++++.|+.+ ..+.+||+.+.+-...-..+.. ..-.+++. .++.+++.|+.+ ..+.+|
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~--------r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~~ 180 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTA--------REGAGLVV---ASGVIYCLGGYDGLNILNSVEKY 180 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSC--------CBSCEEEE---ETTEEEEECCBCSSCBCCCEEEE
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCC--------cccceEEE---ECCEEEEECCCCCCcccceEEEE
Confidence 56677777653 3688999877543221111110 11112222 156677777654 458889
Q ss_pred EcCCCCceeEEEEec---CCCeEEEEEcCCCceEEEEeCC-----CCEEEEECCCCeEEeEEeccccCceeEEEecCCCC
Q 019405 243 DTSAQRRPVMSFDFR---ETPIKAVAEEPDSFNIYIGNGS-----GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP 314 (341)
Q Consensus 243 d~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~g~~d-----g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 314 (341)
|..+.+ -..+... ......+.+ ++++++.|+.+ ..+.+||+.+.+....-... .......+..-++.
T Consensus 181 d~~~~~--W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~ 255 (301)
T 2vpj_A 181 DPHTGH--WTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMT-TPRCYVGATVLRGR 255 (301)
T ss_dssp ETTTTE--EEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCS-SCCBSCEEEEETTE
T ss_pred eCCCCc--EEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCC-CcccceeEEEECCE
Confidence 987643 2222111 111122222 56677777764 46999999887654322111 11111112222677
Q ss_pred EEEEEeCC-----CcEEEEEcCCCc
Q 019405 315 IIASCGLD-----SYLRFWDIKTRQ 334 (341)
Q Consensus 315 ~l~s~~~d-----g~v~iwd~~~~~ 334 (341)
+++.|+.+ ..+.+||+++.+
T Consensus 256 i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 256 LYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp EEEECCBCSSSBEEEEEEEETTTTE
T ss_pred EEEEcCcCCCcccccEEEEcCCCCe
Confidence 77777765 367889988754
No 296
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.28 E-value=0.054 Score=44.34 Aligned_cols=235 Identities=8% Similarity=-0.023 Sum_probs=121.4
Q ss_pred ecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCC
Q 019405 20 FDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGA 99 (341)
Q Consensus 20 ~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 99 (341)
++....|+.+++.........++..+ .....++|..... .++.+-...+.|..+++..+.....+...
T Consensus 9 ~~~~~~I~~i~l~~~~~~~~~~~~~~----~~~~~ld~d~~~~---~lyw~D~~~~~I~r~~~~g~~~~~~~~~~----- 76 (318)
T 3sov_A 9 YANRRDLRLVDATNGKENATIVVGGL----EDAAAVDFVFSHG---LIYWSDVSEEAIKRTEFNKTESVQNVVVS----- 76 (318)
T ss_dssp EECEEEEEEEETTCTTSCCEEEEEEE----EEEEEEEEEGGGT---EEEEEETTTTEEEEEETTSSSCCCEEEEE-----
T ss_pred EEccCeEEEEECCCCceEEEEEecCC----CccEEEEEEeCCC---EEEEEECCCCcEEEEEccCCCceEEEEcC-----
Confidence 33456677777765411111111111 2233455554332 24555566788999988755322111110
Q ss_pred CCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEE
Q 019405 100 QPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLF 179 (341)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~ 179 (341)
......++++-...+. .+++-...+.+.+.+++... .+..-.........++++|.+..|+.
T Consensus 77 --~l~~p~glavd~~~g~-------ly~~d~~~~~I~~~~~dG~~---------~~~l~~~~~~~P~giavdp~~g~ly~ 138 (318)
T 3sov_A 77 --GLLSPDGLACDWLGEK-------LYWTDSETNRIEVSNLDGSL---------RKVLFWQELDQPRAIALDPSSGFMYW 138 (318)
T ss_dssp --CCSCCCEEEEETTTTE-------EEEEETTTTEEEEEETTSCS---------CEEEECSSCSSEEEEEEEGGGTEEEE
T ss_pred --CCCCccEEEEEcCCCe-------EEEEECCCCEEEEEECCCCc---------EEEEEeCCCCCccEEEEeCCCCEEEE
Confidence 0122233443222221 44454555667666653211 11111122345678899987666665
Q ss_pred ee--CCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEE-EEeCCCeEEEEEcCCCCceeEEEEe
Q 019405 180 GG--KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV-AGTNDHQVRLYDTSAQRRPVMSFDF 256 (341)
Q Consensus 180 ~~--~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~ 256 (341)
.. ..+.|...++.... ...+.... -.+...+++ ++++..|. +-...+.|..+|+..... ......
T Consensus 139 td~~~~~~I~r~~~dG~~-~~~~~~~~--------l~~Pnglav--d~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~ 206 (318)
T 3sov_A 139 TDWGEVPKIERAGMDGSS-RFIIINSE--------IYWPNGLTL--DYEEQKLYWADAKLNFIHKSNLDGTNR-QAVVKG 206 (318)
T ss_dssp EECSSSCEEEEEETTSCS-CEEEECSS--------CSCEEEEEE--ETTTTEEEEEETTTTEEEEEETTSCSC-EEEECS
T ss_pred EecCCCCEEEEEEcCCCC-eEEEEECC--------CCCccEEEE--eccCCEEEEEECCCCEEEEEcCCCCce-EEEecC
Confidence 54 35788888876322 22221111 134678899 77555554 445678899999875332 222222
Q ss_pred cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEe
Q 019405 257 RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI 297 (341)
Q Consensus 257 ~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~ 297 (341)
.......+++.. +.++.+-...+.|..+|..+++.+..+.
T Consensus 207 ~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 207 SLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp CCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEEe
Confidence 334456777753 3455565567889999998776655554
No 297
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.27 E-value=0.1 Score=47.18 Aligned_cols=233 Identities=8% Similarity=-0.102 Sum_probs=132.8
Q ss_pred eEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccc
Q 019405 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS 146 (341)
Q Consensus 67 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~ 146 (341)
+|+.+ ..+.|+..++++......+.. ..-.....+.+-...+. .+++-..++.|..++++...
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~-------~~~~~~~~l~~d~~~~~-------lywtD~~~~~I~r~~~~g~~-- 70 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPL-------TGVKEASALDFDVTDNR-------IYWTDISLKTISRAFMNGSA-- 70 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCC-------CSCSCEEEEEEETTTTE-------EEEEETTTTEEEEEETTSCS--
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEc-------CCCCceEEEEEECCCCE-------EEEEECCCCeEEEEECCCCC--
Confidence 45554 467899999976543222211 11244566666544441 44555556777666553211
Q ss_pred cccCCceEEEEEeecCCceEEEEecCCCCEE-EEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecC
Q 019405 147 AESSCSTVKSWNVCASGTIAFSKVDISEKFS-LFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID 225 (341)
Q Consensus 147 ~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l-~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 225 (341)
...+... .-.....+++++.+..| ++-...+.|.+.++........+... -.....+++ .|
T Consensus 71 ------~~~v~~~-g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~---------l~~P~~iav--dp 132 (628)
T 4a0p_A 71 ------LEHVVEF-GLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKD---------LDSPRALAL--DP 132 (628)
T ss_dssp ------CEEEECS-SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSS---------CCCEEEEEE--ET
T ss_pred ------cEEEEeC-CCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCC---------CCCcccEEE--cc
Confidence 1112221 11345678887655544 45455678999998644322112111 123678888 66
Q ss_pred CCCEEEEEe--CCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEe-CCCCEEEEECCCCeEEeEEeccccC
Q 019405 226 DHRKFVAGT--NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLGCFIGKCSG 302 (341)
Q Consensus 226 ~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~ 302 (341)
....|.... ..+.|...++.... ...+...-.....+++++++..|+.+. ..+.|..+|+..... ..+... ..
T Consensus 133 ~~G~lY~tD~g~~~~I~r~~~dG~~--~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~-l~ 208 (628)
T 4a0p_A 133 AEGFMYWTEWGGKPKIDRAAMDGSE--RTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD-LP 208 (628)
T ss_dssp TTTEEEEEECSSSCEEEEEETTSCS--CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC-CS
T ss_pred CCCeEEEeCCCCCCEEEEEeCCCCc--eEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc-CC
Confidence 444555443 25678888887543 233333445678999999776666655 457899999865433 233322 33
Q ss_pred ceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 303 SIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 303 ~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
....+++.. +.++.+-...+.|...|..+|+....+
T Consensus 209 ~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l 244 (628)
T 4a0p_A 209 HPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTII 244 (628)
T ss_dssp CEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred CceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEE
Confidence 456788765 445555556788999998777654443
No 298
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.26 E-value=0.055 Score=44.06 Aligned_cols=193 Identities=11% Similarity=0.094 Sum_probs=110.8
Q ss_pred eeEEEcccceeEEEEeeecccccccCCceEEEEEeec-------CCceEEEEe---cCCCCEEEEee-------------
Q 019405 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA-------SGTIAFSKV---DISEKFSLFGG------------- 181 (341)
Q Consensus 125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~-------~~~i~~~~~---~~~~~~l~~~~------------- 181 (341)
.+++.-..++|..|+..... ...+ .... ...+..+.+ +|++.++++..
T Consensus 27 ~~vs~l~~g~V~~~~~~~~~--------~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~ 97 (334)
T 2p9w_A 27 FYQSNLYKGRIEVYNPKTQS--------HFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSH 97 (334)
T ss_dssp EEEEETTTTEEEEECTTTCC--------EEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSS
T ss_pred EEEEeccCCEEEEEcCCCCe--------EEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccC
Confidence 34444468899888763211 1122 1211 113578899 68877777533
Q ss_pred CCCeEEEEECC---CCceeeecCCCCCCcc----CccCCeeeeEEEEEecCCCCEEEEEeCC-CeEEEEEcCCCCceeEE
Q 019405 182 KGVEVNVWDLD---KCEKIWTAKPPPKNSL----GIFTPTWFTSAAFLSIDDHRKFVAGTND-HQVRLYDTSAQRRPVMS 253 (341)
Q Consensus 182 ~d~~v~i~d~~---~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~l~~~~~d-~~i~iwd~~~~~~~~~~ 253 (341)
.+..|..||+. +++.++...-.....- .-........++. .++|+..++++.. +.|...+.... . +..
T Consensus 98 g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvav--D~~GnaYVt~s~~~~~I~rV~pdG~-~-~~~ 173 (334)
T 2p9w_A 98 GASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQ--DRDGNSYVAFALGMPAIARVSADGK-T-VST 173 (334)
T ss_dssp SCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEE--CTTSCEEEEEEESSCEEEEECTTSC-C-EEE
T ss_pred CCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEE--CCCCCEEEeCCCCCCeEEEEeCCCC-E-Eee
Confidence 25789999998 7777655432100000 0000134778888 8999999998888 88777776643 2 333
Q ss_pred EEecC------CCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeE--EeEEe-ccc--cCceeEE-EecCCCCE-EEEEe
Q 019405 254 FDFRE------TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL--LGCFI-GKC--SGSIRSI-ARHPTLPI-IASCG 320 (341)
Q Consensus 254 ~~~~~------~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~--~~~~~-~~~--~~~i~~~-~~~~~~~~-l~s~~ 320 (341)
+.... ...+.++++|+|..|++....+.|..+|+.+... +..-. +.. -.....| .--.+|+. |++.+
T Consensus 174 ~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~ 253 (334)
T 2p9w_A 174 FAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGAR 253 (334)
T ss_dssp EEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEE
T ss_pred eeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEEEcC
Confidence 32211 1256899999998888887799999999874322 11110 110 1122332 33346666 55555
Q ss_pred CCCcEEEEEc
Q 019405 321 LDSYLRFWDI 330 (341)
Q Consensus 321 ~dg~v~iwd~ 330 (341)
..+.+.+.+.
T Consensus 254 ~~~~~~l~S~ 263 (334)
T 2p9w_A 254 APYAISFRSW 263 (334)
T ss_dssp TTEEEEEECS
T ss_pred CCCEEEEECC
Confidence 5655555543
No 299
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.21 E-value=0.045 Score=47.55 Aligned_cols=160 Identities=13% Similarity=0.025 Sum_probs=91.9
Q ss_pred ceEEEEecC-CCCEEEEee-CCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEE------EecCCCCEEEEEeC
Q 019405 164 TIAFSKVDI-SEKFSLFGG-KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAF------LSIDDHRKFVAGTN 235 (341)
Q Consensus 164 ~i~~~~~~~-~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------~~~~~~~~l~~~~~ 235 (341)
....|+++| +...|+.+. ..+.|++.|++++............ ......++| . ++++..|+++..
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~------~~~p~~ia~~~~~~~~-d~~G~~lyvad~ 212 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIP------TNRIRSIAFNKKIEGY-ADEAEYMIVAID 212 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSS------CSBEEEEEECCCBTTT-BCTTCEEEEEEC
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccc------cCCCcEEEEeeccccc-CCCCCEEEEEeC
Confidence 356889998 344444444 3467999999876665444332110 133667777 1 356775666554
Q ss_pred CC-------eEEEEEcCC-CCce----eEEEEecCCCeEEEEEcCCC-ceEEEEeCCCCEEEEECC-------CCeE---
Q 019405 236 DH-------QVRLYDTSA-QRRP----VMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIR-------TGKL--- 292 (341)
Q Consensus 236 d~-------~i~iwd~~~-~~~~----~~~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~iwd~~-------~~~~--- 292 (341)
.+ .|.+++... +.-. ...+.... ....++++|++ .++++-..++.|+.+|+. ++..
T Consensus 213 ~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~-~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp 291 (496)
T 3kya_A 213 YDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYK-QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDP 291 (496)
T ss_dssp CCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEES-CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCC
T ss_pred CCCCcccCceEEEEecCCCCceeecccceeeccCC-CceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecc
Confidence 43 366665333 1110 02232222 34578899955 445555567889999987 5543
Q ss_pred --------EeE-EeccccCceeEEEecCCCCE-EEEEeCCCcEEEEEcC
Q 019405 293 --------LGC-FIGKCSGSIRSIARHPTLPI-IASCGLDSYLRFWDIK 331 (341)
Q Consensus 293 --------~~~-~~~~~~~~i~~~~~~~~~~~-l~s~~~dg~v~iwd~~ 331 (341)
... +.......-+.++|+|+|+. +++-+....|+.++..
T Consensus 292 ~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 292 IVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp BGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred cccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 112 22221345679999999995 4444566788886543
No 300
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.13 E-value=0.074 Score=42.99 Aligned_cols=146 Identities=11% Similarity=0.053 Sum_probs=76.3
Q ss_pred CCCEEEEeeCCC-----eEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCC-------CeEE
Q 019405 173 SEKFSLFGGKGV-----EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-------HQVR 240 (341)
Q Consensus 173 ~~~~l~~~~~d~-----~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-------~~i~ 240 (341)
++++++.|+.++ .+.+||+.+.+-...-..+.. ..-.+++. -++.+++.|+.+ ..+.
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~--------r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~~ 176 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTR--------RSSVGVGV---VGGLLYAVGGYDVASRQCLSTVE 176 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSC--------CBSCEEEE---ETTEEEEECCEETTTTEECCCEE
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCc--------ccCceEEE---ECCEEEEEeCCCCCCCccccEEE
Confidence 566777777553 578889876543222111110 11112222 156677766542 3588
Q ss_pred EEEcCCCCceeEEEEe---cCCCeEEEEEcCCCceEEEEeCC-----CCEEEEECCCCeEEeEEeccccCceeEEEecCC
Q 019405 241 LYDTSAQRRPVMSFDF---RETPIKAVAEEPDSFNIYIGNGS-----GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPT 312 (341)
Q Consensus 241 iwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~g~~d-----g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~ 312 (341)
+||..+.+ -..+.. .......+.+ ++++++.|+.+ ..+.+||+.+.+....-... .......+..-+
T Consensus 177 ~yd~~~~~--W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~-~~r~~~~~~~~~ 251 (302)
T 2xn4_A 177 CYNATTNE--WTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMN-MCRRNAGVCAVN 251 (302)
T ss_dssp EEETTTTE--EEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCS-SCCBSCEEEEET
T ss_pred EEeCCCCc--EEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCC-CccccCeEEEEC
Confidence 89987643 222211 1111122222 56777777764 46999999887654322111 111111112236
Q ss_pred CCEEEEEeCCC-----cEEEEEcCCCc
Q 019405 313 LPIIASCGLDS-----YLRFWDIKTRQ 334 (341)
Q Consensus 313 ~~~l~s~~~dg-----~v~iwd~~~~~ 334 (341)
+.+++.|+.++ .+.+||+.+.+
T Consensus 252 ~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 252 GLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp TEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CEEEEECCcCCCcccccEEEEcCCCCe
Confidence 77777877654 48999998764
No 301
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.02 E-value=0.12 Score=43.55 Aligned_cols=145 Identities=9% Similarity=-0.003 Sum_probs=89.0
Q ss_pred CCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCC----
Q 019405 173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR---- 248 (341)
Q Consensus 173 ~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---- 248 (341)
++..++.+ .++.||.-++......+.+..+..-.+ ..+..+.. +|+|++|+..+ +..|.|-.+..+.
T Consensus 31 n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f-----~~i~qlvl--SpsG~lLAl~g-~~~V~Vv~LP~~~~~~~ 101 (452)
T 3pbp_A 31 NGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVL-----DDTFHVIS--STSGDLLCLFN-DNEIFVMEVPWGYSNVE 101 (452)
T ss_dssp TTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCC-----CTTCEEEE--CTTSSEEEEEC-SSEEEEEECCTTCSCCC
T ss_pred CCCEEEEE-ECCEEEEEECCCCCcceEEecCccccc-----CceeEEEE--CCCCCEEEEec-CCeEEEEEecCccccCc
Confidence 45555543 346788777764333333333210000 12566777 99999999875 5689998887321
Q ss_pred -----c--eeEEEEec------CCCeEEEEEcCCC---ceEEEEeCCCCEEEEECCCC--eEEeEEecc--------ccC
Q 019405 249 -----R--PVMSFDFR------ETPIKAVAEEPDS---FNIYIGNGSGDLASVDIRTG--KLLGCFIGK--------CSG 302 (341)
Q Consensus 249 -----~--~~~~~~~~------~~~v~~~~~~~~~---~~l~~g~~dg~i~iwd~~~~--~~~~~~~~~--------~~~ 302 (341)
. ..+.+.-. ..+|..+.|+|-+ ..|++-..|+.|++||+... ++. .+... ...
T Consensus 102 ~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ 180 (452)
T 3pbp_A 102 DVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVN 180 (452)
T ss_dssp CHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCC
T ss_pred ccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccc
Confidence 1 12233322 4679999999954 68999999999999999852 122 22110 125
Q ss_pred ceeEEEecCCCCEEEE--EeCCCcEEE
Q 019405 303 SIRSIARHPTLPIIAS--CGLDSYLRF 327 (341)
Q Consensus 303 ~i~~~~~~~~~~~l~s--~~~dg~v~i 327 (341)
.|.+++|.+++-.|.. .+..|.|+-
T Consensus 181 ev~S~~Fg~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 181 DITDLEFSKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp CEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred eEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence 7889999987765555 446676653
No 302
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=96.99 E-value=0.13 Score=43.53 Aligned_cols=209 Identities=11% Similarity=0.005 Sum_probs=110.4
Q ss_pred CCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCc----chheeeccCCCCCCCCCCceeeEeeeeccccccccccce
Q 019405 50 SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD----LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT 125 (341)
Q Consensus 50 ~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (341)
.....++|..... .++.+-..++.|+.+++.... ....+.. .......+++-...+. .
T Consensus 112 ~~~~~l~~d~~~~---~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~--------~~~~p~glavD~~~~~-------l 173 (400)
T 3p5b_L 112 RNVVALDTEVASN---RIYWSDLSQRMICSTQLDRAHGVSSYDTVISR--------DIQAPDGLAVDWIHSN-------I 173 (400)
T ss_dssp SCEEEEEEETTTT---EEEEEETTTTEEEEEEC------CCCEEEECS--------SCSCEEEEEEETTTTE-------E
T ss_pred CcceEEeeeeccC---ceEEEecCCCeEEEEEcccCCCCCcceEEEeC--------CCCCcccEEEEecCCc-------e
Confidence 3445566665333 244444567888888876422 1111110 1123344444322221 4
Q ss_pred eEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeC--CCeEEEEECCCCceeeecCCC
Q 019405 126 LLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK--GVEVNVWDLDKCEKIWTAKPP 203 (341)
Q Consensus 126 l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~--d~~v~i~d~~~~~~~~~~~~~ 203 (341)
+++-...+.|.+.+++... ...+.. ........++++|.+..|+.... .+.|...++........+...
T Consensus 174 Y~~d~~~~~I~~~~~~g~~--------~~~l~~-~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~ 244 (400)
T 3p5b_L 174 YWTDSVLGTVSVADTKGVK--------RKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN 244 (400)
T ss_dssp EEEETTTTEEEEECTTTCS--------EEEEEE-CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSS
T ss_pred EEEECCCCeEEEEeCCCCc--------eEEEEe-CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECC
Confidence 4555556666666543111 111221 12345678999987666665442 367888888643322222211
Q ss_pred CCCccCccCCeeeeEEEEEecCCCCEEEEE-eCCCeEEEEEcCCCCceeEEEEe--cCCCeEEEEEcCCCceEEEEeCCC
Q 019405 204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAG-TNDHQVRLYDTSAQRRPVMSFDF--RETPIKAVAEEPDSFNIYIGNGSG 280 (341)
Q Consensus 204 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~g~~dg 280 (341)
-.+...+++ ++++..|+.+ ...+.|..+|+..... ...... .-.....+++. .+.++.+-...+
T Consensus 245 ---------l~~P~glav--d~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~ 311 (400)
T 3p5b_L 245 ---------IQWPNGITL--DLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF-EDKVFWTDIINE 311 (400)
T ss_dssp ---------CSCEEEEEE--ETTTTEEEEEETTTTEEEEEETTSCCC-EEEEECSSTTSSEEEEEEE-TTEEEEEESSSC
T ss_pred ---------CCceEEEEE--EeCCCEEEEEECCCCEEEEEeCCCCcc-EEEEeCCCCCCCCEEEEEe-CCEEEEecCCCC
Confidence 134778899 7666665554 4567899999876432 222222 12334567773 344555666778
Q ss_pred CEEEEECCCCeEEeEEec
Q 019405 281 DLASVDIRTGKLLGCFIG 298 (341)
Q Consensus 281 ~i~iwd~~~~~~~~~~~~ 298 (341)
.|..+|..+|+.+..+..
T Consensus 312 ~V~~~~~~~G~~~~~i~~ 329 (400)
T 3p5b_L 312 AIFSANRLTGSDVNLLAE 329 (400)
T ss_dssp SEEEEESSSCCCCEEEEC
T ss_pred eEEEEEcCCCCceEEEec
Confidence 899999877766655543
No 303
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.93 E-value=0.12 Score=42.00 Aligned_cols=108 Identities=12% Similarity=0.144 Sum_probs=74.2
Q ss_pred EEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCC
Q 019405 167 FSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA 246 (341)
Q Consensus 167 ~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 246 (341)
+.-.+|..+.+|.-. ..++.++|+++.+.+..+.-.. .|.-=.|. +.+.|+..+ +..|+.|++..
T Consensus 71 sAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~e----------~VvfWkWi---s~~~L~lVT-~taVyHWs~~~ 135 (365)
T 2xzh_A 71 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD----------DVTFWKWI---SLNTVALVT-DNAVYHWSMEG 135 (365)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS----------CEEEEEEC---SSSEEEEEE-SSEEEEEESST
T ss_pred eeeeCCCccEEEEec-CCeEEEechHHhhhhcceecCC----------ccEEEEec---CCCeEEEEc-CCcEEEEcccC
Confidence 445588888887665 6789999999998887766542 25555673 344555544 55899999987
Q ss_pred CCceeEEEEecC----CCeEEEEEcCCCceEEEEeC-------CCCEEEEECCC
Q 019405 247 QRRPVMSFDFRE----TPIKAVAEEPDSFNIYIGNG-------SGDLASVDIRT 289 (341)
Q Consensus 247 ~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~g~~-------dg~i~iwd~~~ 289 (341)
...|++.+..|. ..|..-..+++.++++..+- .|.+.+|..+.
T Consensus 136 ~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er 189 (365)
T 2xzh_A 136 ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR 189 (365)
T ss_dssp TCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT
T ss_pred CCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecc
Confidence 667888887653 35666677888887765432 25577777653
No 304
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.93 E-value=0.12 Score=41.89 Aligned_cols=145 Identities=10% Similarity=0.054 Sum_probs=77.1
Q ss_pred CCCEEEEeeCC------CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeC---------CC
Q 019405 173 SEKFSLFGGKG------VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN---------DH 237 (341)
Q Consensus 173 ~~~~l~~~~~d------~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---------d~ 237 (341)
++++++.|+.+ ..+.+||..+.+-...-..+.. ..-.+++. -++.+++.|+. -.
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~--------r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~ 169 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQ--------RCSHGMVE---ANGLIYVCGGSLGNNVSGRVLN 169 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSC--------CBSCEEEE---ETTEEEEECCEESCTTTCEECC
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCC--------cceeEEEE---ECCEEEEECCCCCCCCcccccc
Confidence 56777777765 4588999887643222111110 11112222 15666666653 34
Q ss_pred eEEEEEcCCCCceeEEEEecCC--CeEEEEEcCCCceEEEEeCC-----CCEEEEECCCCeEEeE--EeccccCceeEEE
Q 019405 238 QVRLYDTSAQRRPVMSFDFRET--PIKAVAEEPDSFNIYIGNGS-----GDLASVDIRTGKLLGC--FIGKCSGSIRSIA 308 (341)
Q Consensus 238 ~i~iwd~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~g~~d-----g~i~iwd~~~~~~~~~--~~~~~~~~i~~~~ 308 (341)
.+.+||..+.+ -..+..... .-.++... ++++++.|+.+ ..+.+||+.+.+.... +... ......+.
T Consensus 170 ~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~ 245 (306)
T 3ii7_A 170 SCEVYDPATET--WTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWK-GVTVKCAA 245 (306)
T ss_dssp CEEEEETTTTE--EEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCC-BSCCEEEE
T ss_pred eEEEeCCCCCe--EEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCC-ccceeEEE
Confidence 58889988743 222221111 11122222 56677777654 4689999988754322 2211 11222222
Q ss_pred ecCCCCEEEEEeCC-----CcEEEEEcCCCc
Q 019405 309 RHPTLPIIASCGLD-----SYLRFWDIKTRQ 334 (341)
Q Consensus 309 ~~~~~~~l~s~~~d-----g~v~iwd~~~~~ 334 (341)
+ ++.+++.|+.+ ..+.+||+.+.+
T Consensus 246 ~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 246 V--GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp E--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred E--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 2 66777888754 468899988754
No 305
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.85 E-value=0.15 Score=41.87 Aligned_cols=153 Identities=12% Similarity=0.048 Sum_probs=84.6
Q ss_pred CCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEE
Q 019405 162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL 241 (341)
Q Consensus 162 ~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~i 241 (341)
...+..+.+.+++.+++.+...+..+-.|- .++.-..+... ....+..+.+ .+++..+ ..+.+|.+++
T Consensus 162 ~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~-gG~tW~~~~~~--------~~~~~~~~~~--~~~g~~~-~~~~~G~~~~ 229 (327)
T 2xbg_A 162 IGVMRNLNRSPSGEYVAVSSRGSFYSTWEP-GQTAWEPHNRT--------TSRRLHNMGF--TPDGRLW-MIVNGGKIAF 229 (327)
T ss_dssp CCCEEEEEECTTSCEEEEETTSSEEEEECT-TCSSCEEEECC--------SSSCEEEEEE--CTTSCEE-EEETTTEEEE
T ss_pred CcceEEEEEcCCCcEEEEECCCcEEEEeCC-CCCceeECCCC--------CCCccceeEE--CCCCCEE-EEeCCceEEE
Confidence 346788899998887776654443333442 12211111111 1134777888 7777655 4456788777
Q ss_pred EEcCCCCceeEEEE----ecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEecc--ccCceeEEEecCCCCE
Q 019405 242 YDTSAQRRPVMSFD----FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK--CSGSIRSIARHPTLPI 315 (341)
Q Consensus 242 wd~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~ 315 (341)
.+...++. -..+. .+...+.++.+.+++..++++. ++.| ++....|+.-..+... ....++++.|.+++ .
T Consensus 230 s~~D~G~t-W~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~ 305 (327)
T 2xbg_A 230 SDPDNSEN-WGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-Q 305 (327)
T ss_dssp EETTEEEE-ECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-E
T ss_pred ecCCCCCe-eEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-c
Confidence 64221211 11111 1223578899988877666554 6766 3444445433223211 13568889997555 4
Q ss_pred EEEEeCCCcEEEEEc
Q 019405 316 IASCGLDSYLRFWDI 330 (341)
Q Consensus 316 l~s~~~dg~v~iwd~ 330 (341)
++.++.+|.|.-++-
T Consensus 306 ~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 306 GFILGQKGILLRYVT 320 (327)
T ss_dssp EEEECSTTEEEEECC
T ss_pred eEEEcCCceEEEEcC
Confidence 666678898776653
No 306
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.84 E-value=0.25 Score=48.40 Aligned_cols=232 Identities=13% Similarity=0.061 Sum_probs=129.2
Q ss_pred CCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEee
Q 019405 62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE 141 (341)
Q Consensus 62 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~ 141 (341)
+|..+.+|.-. ..++.|+|+++.+.++..... ..++--.|.++..- -+++ +..+..|++.
T Consensus 74 nP~~~iiALra-g~~lQiFnl~~k~klks~~~~---------e~VvfWkWis~~~l-------~lVT---~~aVyHW~~~ 133 (1630)
T 1xi4_A 74 NPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT---------DDVTFWKWISLNTV-------ALVT---DNAVYHWSME 133 (1630)
T ss_pred CCCcceEEEec-CCeEEEeehHHhhhhcccccC---------CCceEEEecCCCee-------EEEc---CCeEEEeccC
Confidence 44445555543 789999999988777776653 45655566555441 2333 4578999985
Q ss_pred ecccccccCCceEEEEEeec---CCceEEEEecCCCCEEEEee-------CCCeEEEEECCCCceeeecCCCCCCccCc-
Q 019405 142 VTKVSAESSCSTVKSWNVCA---SGTIAFSKVDISEKFSLFGG-------KGVEVNVWDLDKCEKIWTAKPPPKNSLGI- 210 (341)
Q Consensus 142 ~~~~~~~~~~~~v~~~~~~~---~~~i~~~~~~~~~~~l~~~~-------~d~~v~i~d~~~~~~~~~~~~~~~~~~~~- 210 (341)
.. ..++++|+... +..|..-..+++.++++..| -.|.+.+|..+.+.. +.+.+|.......
T Consensus 134 ~~-------s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s-Q~iegha~~F~~~~ 205 (1630)
T 1xi4_A 134 GE-------SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAASFAQFK 205 (1630)
T ss_pred CC-------CccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc-hhhhHhHhhhheec
Confidence 32 23455554321 24566667778888777433 357788998865322 2233332111000
Q ss_pred ----cCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCC---Cce-----eEEEEe---cCCCeEEEEEcCCCceEEE
Q 019405 211 ----FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ---RRP-----VMSFDF---RETPIKAVAEEPDSFNIYI 275 (341)
Q Consensus 211 ----~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~-----~~~~~~---~~~~v~~~~~~~~~~~l~~ 275 (341)
.++..+.|.+.. .+ ..+.++|.++... ..+ +..+.. ..+--.++..++.-..++.
T Consensus 206 ~~~~~~~~~l~~f~~~-~~---------~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~ 275 (1630)
T 1xi4_A 206 MEGNAEESTLFCFAVR-GQ---------AGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFL 275 (1630)
T ss_pred cCCCCCCceEEEEEEe-cC---------CCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEE
Confidence 011112222221 01 1267888887542 111 111111 1222346777777778888
Q ss_pred EeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405 276 GNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (341)
Q Consensus 276 g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 332 (341)
-+.-|.|+++|+.++.++..-+-. ..+|...+-+....-++.....|.|.--.+..
T Consensus 276 itk~G~~~~~d~~t~~~i~~~ris-~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~ 331 (1630)
T 1xi4_A 276 ITKYGYIHLYDLETGTCIYMNRIS-GETIFVTAPHEATAGIIGVNRKGQVLSVCVEE 331 (1630)
T ss_pred EecCceEEEEecccchhhhhcccc-CCceEEeccCCCCCceEEEcCCceEEEEEEcc
Confidence 889999999999999987665543 45565555554433444444666665555443
No 307
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.77 E-value=0.18 Score=41.79 Aligned_cols=160 Identities=8% Similarity=0.014 Sum_probs=87.2
Q ss_pred EEEecCCCCEEEEe------------eCCCeEEEEECCCCc-eeeecCCCCCCccCccCCeeeeEEEEEecCCCC--EEE
Q 019405 167 FSKVDISEKFSLFG------------GKGVEVNVWDLDKCE-KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR--KFV 231 (341)
Q Consensus 167 ~~~~~~~~~~l~~~------------~~d~~v~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~ 231 (341)
.+.+.|+|..++++ -.+|.|.++|..+.. ....+...... .. ........+.+.+..++. +++
T Consensus 54 Di~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~-~~-~~~f~PhGi~~~~d~dg~~~L~V 131 (355)
T 3sre_A 54 DLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNT-LD-ISSFNPHGISTFIDDDNTVYLLV 131 (355)
T ss_dssp EEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSS-CC-GGGCCEEEEEEEECTTCCEEEEE
T ss_pred eeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCC-CC-cCceeeeeeEEEECCCCcEEEEE
Confidence 44556666554444 268999999987421 11222211100 00 001235566664332443 444
Q ss_pred EEeC--CCeEEEEEcCCCCcee---EEEEec-CCCeEEEEEcCCCceEEEEeC-----------------CCCEEEEECC
Q 019405 232 AGTN--DHQVRLYDTSAQRRPV---MSFDFR-ETPIKAVAEEPDSFNIYIGNG-----------------SGDLASVDIR 288 (341)
Q Consensus 232 ~~~~--d~~i~iwd~~~~~~~~---~~~~~~-~~~v~~~~~~~~~~~l~~g~~-----------------dg~i~iwd~~ 288 (341)
+-.. +.+|.+|++....... ..+.+. -...+.+.+.++|.+.++... .|.|+-+|..
T Consensus 132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~ 211 (355)
T 3sre_A 132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN 211 (355)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT
T ss_pred EECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC
Confidence 4333 5678888877543212 222221 235788999999987776541 2456666653
Q ss_pred CCeEEeEEeccccCceeEEEecCCCCEEEEE-eCCCcEEEEEcCC
Q 019405 289 TGKLLGCFIGKCSGSIRSIARHPTLPIIASC-GLDSYLRFWDIKT 332 (341)
Q Consensus 289 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~~dg~v~iwd~~~ 332 (341)
+......+ -..-+.++|+||++.|..+ +..+.|..|++..
T Consensus 212 --~~~~~~~~--l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 212 --DVRVVAEG--FDFANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp --CCEEEEEE--ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred --eEEEeecC--CcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 32222222 3457899999999866555 4678999999863
No 308
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=96.75 E-value=0.17 Score=41.26 Aligned_cols=233 Identities=9% Similarity=-0.004 Sum_probs=122.1
Q ss_pred eecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCC---cchheeeccC
Q 019405 19 TFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG---DLRVAISNAG 95 (341)
Q Consensus 19 ~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~ 95 (341)
-.+....|+.+++... ........ ......+++.+... .++.+-..++.|..+++... .....+..
T Consensus 5 l~~~~~~I~~i~~~~~-----~~~~~~~~-~~~p~g~~~d~~~~---~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~-- 73 (316)
T 1ijq_A 5 FFTNRHEVRKMTLDRS-----EYTSLIPN-LRNVVALDTEVASN---RIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-- 73 (316)
T ss_dssp EEECBSSEEEEETTSC-----CCEEEECS-CSSEEEEEEETTTT---EEEEEETTTTEEEEEEC--------CEEEEC--
T ss_pred EEECCCeEEEEECCCc-----ceEehhcC-CCceEEEEEEeCCC---EEEEEECCCCcEEEEECCCCCCCcccEEEEe--
Confidence 3344556777777654 12112222 23344566654332 24555566789999998651 21111111
Q ss_pred CCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCC
Q 019405 96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK 175 (341)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~ 175 (341)
.......++++-...+. .+++-...+.+.+.+++.. ..+..-.........++++|.+.
T Consensus 74 -----~~~~~p~glavd~~~~~-------ly~~d~~~~~I~~~~~~g~---------~~~~~~~~~~~~P~~iavdp~~g 132 (316)
T 1ijq_A 74 -----RDIQAPDGLAVDWIHSN-------IYWTDSVLGTVSVADTKGV---------KRKTLFRENGSKPRAIVVDPVHG 132 (316)
T ss_dssp -----SSCSCCCEEEEETTTTE-------EEEEETTTTEEEEEETTSS---------SEEEEEECTTCCEEEEEEETTTT
T ss_pred -----CCCCCcCEEEEeecCCe-------EEEEECCCCEEEEEeCCCC---------ceEEEEECCCCCcceEEeCCCCC
Confidence 00122334443222221 4455556677777665321 11211111234567899998766
Q ss_pred EEEEeeCC--CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEE-EeCCCeEEEEEcCCCCceeE
Q 019405 176 FSLFGGKG--VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA-GTNDHQVRLYDTSAQRRPVM 252 (341)
Q Consensus 176 ~l~~~~~d--~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~ 252 (341)
.|+..... +.|..+++.. .....+.... -.+...+++ ++++..|+. -...+.|..+|+.... ..
T Consensus 133 ~ly~~d~~~~~~I~~~~~dG-~~~~~~~~~~--------~~~P~gla~--d~~~~~lY~~D~~~~~I~~~d~dg~~--~~ 199 (316)
T 1ijq_A 133 FMYWTDWGTPAKIKKGGLNG-VDIYSLVTEN--------IQWPNGITL--DLLSGRLYWVDSKLHSISSIDVNGGN--RK 199 (316)
T ss_dssp EEEEEECSSSCEEEEEETTS-CCEEEEECSS--------CSCEEEEEE--ETTTTEEEEEETTTTEEEEEETTSCS--CE
T ss_pred EEEEEccCCCCeEEEEcCCC-CCeEEEEECC--------CCCceEEEE--eccCCEEEEEECCCCeEEEEecCCCc--eE
Confidence 65554432 6888888753 2222221111 134778899 766655554 4456799999987533 23
Q ss_pred EEEe---cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEe
Q 019405 253 SFDF---RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI 297 (341)
Q Consensus 253 ~~~~---~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~ 297 (341)
.+.. .-.....+++. .+.++++-...+.|..+|..+++.+..+.
T Consensus 200 ~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 200 TILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp EEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence 3322 12345677775 35555566667889999987776555543
No 309
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.66 E-value=0.22 Score=41.33 Aligned_cols=59 Identities=12% Similarity=0.065 Sum_probs=37.1
Q ss_pred CeEEEEEcCCCceEEEEeCCCCEEEEECCCCeE------EeEEeccccCceeEEEecCCCCEEEEEe
Q 019405 260 PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL------LGCFIGKCSGSIRSIARHPTLPIIASCG 320 (341)
Q Consensus 260 ~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~------~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 320 (341)
....++| .+|.++++....+.|...++..... ...+... ...+..+++.|||.++++..
T Consensus 269 ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~-~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 269 PPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSG-FGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp CEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEES-SCCEEEEEECTTSCEEEEEC
T ss_pred CCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheeccc-CCCeeEEEECCCCcEEEEEe
Confidence 4567777 4666666666667788777653321 1222222 35789999999998766653
No 310
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.64 E-value=0.2 Score=40.58 Aligned_cols=146 Identities=14% Similarity=0.046 Sum_probs=76.3
Q ss_pred CCCEEEEeeCC-----CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCC-----CeEEEE
Q 019405 173 SEKFSLFGGKG-----VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-----HQVRLY 242 (341)
Q Consensus 173 ~~~~l~~~~~d-----~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-----~~i~iw 242 (341)
++++++.|+.+ ..+.+||+.+.+-...-..+.. ..-.+++. -++.+++.|+.+ ..+.+|
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--------r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~y 189 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTR--------RIGVGVAV---LNRLLYAVGGFDGTNRLNSAECY 189 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSC--------CBSCEEEE---ETTEEEEECCBCSSCBCCCEEEE
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCcc--------ccceEEEE---ECCEEEEEeCCCCCCcCceEEEE
Confidence 56677776643 3588899877543222111110 11112222 156677777654 458888
Q ss_pred EcCCCCceeEEEEe---cCCCeEEEEEcCCCceEEEEeCC-----CCEEEEECCCCeEEeEEeccccCceeEEEecCCCC
Q 019405 243 DTSAQRRPVMSFDF---RETPIKAVAEEPDSFNIYIGNGS-----GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP 314 (341)
Q Consensus 243 d~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~g~~d-----g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 314 (341)
|..+.+ -..+.. .......+.+ ++++++.|+.+ ..+.+||+.+.+....-.......-.+++. -++.
T Consensus 190 d~~~~~--W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~ 264 (308)
T 1zgk_A 190 YPERNE--WRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV-HQGR 264 (308)
T ss_dssp ETTTTE--EEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTE
T ss_pred eCCCCe--EeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEE-ECCE
Confidence 887643 111111 1111122233 66777777764 569999998876543211110111112222 2667
Q ss_pred EEEEEeCC-----CcEEEEEcCCCc
Q 019405 315 IIASCGLD-----SYLRFWDIKTRQ 334 (341)
Q Consensus 315 ~l~s~~~d-----g~v~iwd~~~~~ 334 (341)
+++.|+.+ ..+.+||+.+.+
T Consensus 265 i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 265 IYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp EEEECCBCSSCBCCEEEEEETTTTE
T ss_pred EEEEcCcCCCcccceEEEEcCCCCE
Confidence 77777754 357899988754
No 311
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=96.64 E-value=0.43 Score=44.33 Aligned_cols=207 Identities=11% Similarity=-0.008 Sum_probs=107.5
Q ss_pred CceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCc----chheeeccCCCCCCCCCCceeeEeeeecccccccccccee
Q 019405 51 SNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD----LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL 126 (341)
Q Consensus 51 ~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 126 (341)
....+++..... .++++-...+.|+.+++.... ....+.. .......+++-...++ .+
T Consensus 425 ~~~gl~~d~~~~---~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~--------~l~~P~GLAvD~~~~~-------LY 486 (791)
T 3m0c_C 425 NVVALDTEVASN---RIYWSDLSQRMICSTQLDRAHGVSSYDTVISR--------DIQAPDGLAVDWIHSN-------IY 486 (791)
T ss_dssp SEEEEEEETTTT---EEEEEETTTTEEEEEEC--------CEEEECS--------SCSCCCEEEEETTTTE-------EE
T ss_pred ceEEEeecccCC---eeEEeeccceeEEEEeccCCCCCcceeEEEec--------CCCCcceeeeeecCCc-------EE
Confidence 344555554322 245555566788888876421 1111110 1122334444322221 55
Q ss_pred EEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeC--CCeEEEEECCCCceeeecCCCC
Q 019405 127 LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK--GVEVNVWDLDKCEKIWTAKPPP 204 (341)
Q Consensus 127 ~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~--d~~v~i~d~~~~~~~~~~~~~~ 204 (341)
++-...+.|.+.+++.. ..++.-.........|+++|....|+.... .+.|...++........+...
T Consensus 487 ~tD~~~~~I~v~~ldG~---------~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~- 556 (791)
T 3m0c_C 487 WTDSVLGTVSVADTKGV---------KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN- 556 (791)
T ss_dssp EEETTTTEEEEEETTSS---------SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSS-
T ss_pred EEecCCCeEEEEeCCCC---------eEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCC-
Confidence 55556677776665321 112221122345788999997666665442 367888888643332222211
Q ss_pred CCccCccCCeeeeEEEEEecCCCCEEEEE-eCCCeEEEEEcCCCCceeEEEEec--CCCeEEEEEcCCCceEEEEeCCCC
Q 019405 205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAG-TNDHQVRLYDTSAQRRPVMSFDFR--ETPIKAVAEEPDSFNIYIGNGSGD 281 (341)
Q Consensus 205 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~g~~dg~ 281 (341)
-.+...|++ .+....|+.+ ...+.|..+++..... ...+... -....+|++..+ .++++-...+.
T Consensus 557 --------l~~P~GLav--D~~~~~LYwaD~~~~~I~~~d~dG~~~-~~v~~~~~~l~~P~glav~~~-~lYwtD~~~~~ 624 (791)
T 3m0c_C 557 --------IQWPNGITL--DLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFED-KVFWTDIINEA 624 (791)
T ss_dssp --------CSCEEEEEE--ETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEETT-EEEEEETTTTE
T ss_pred --------CCCceEEEE--ecCCCeEEEEeCCCCcEEEEecCCCce-EEEecCCCccCCCCEEEEeCC-EEEEEECCCCE
Confidence 134778888 6555555544 4567899999876443 2333321 123446666433 34444445678
Q ss_pred EEEEECCCCeEEeEEe
Q 019405 282 LASVDIRTGKLLGCFI 297 (341)
Q Consensus 282 i~iwd~~~~~~~~~~~ 297 (341)
|...|..+++.+..+.
T Consensus 625 I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 625 IFSANRLTGSDVNLLA 640 (791)
T ss_dssp EEEEETTTCCCCEEEE
T ss_pred EEEEeCCCCcceEEee
Confidence 8888887776555543
No 312
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.59 E-value=0.28 Score=41.58 Aligned_cols=224 Identities=8% Similarity=0.049 Sum_probs=127.2
Q ss_pred CCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCce
Q 019405 74 NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCST 153 (341)
Q Consensus 74 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~ 153 (341)
+..|.|-|+.++......... . ..+..++.. .+++--....+.|++++... .
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~----------A--dsAIMnP~~--------~iiALrag~~lQiFnle~K~--------k 98 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPIS----------A--DSAIMNPAS--------KVIALKAGKTLQIFNIEMKS--------K 98 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECC----------C--SEEEECSSS--------SCEEEEETTEEEEEETTTTE--------E
T ss_pred CCeEEEEECCCCCcceecccc----------c--ceeeeCCCC--------cEEEEecCCeEEEEchHHhh--------h
Confidence 347889999876554322220 0 122334433 34444447889999987544 4
Q ss_pred EEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCC-CceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEE
Q 019405 154 VKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDK-CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA 232 (341)
Q Consensus 154 v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 232 (341)
++.+.. ...|.--.|-. .+.|+..+. ..|+-|+++. ..+...+..+..- ....|..-.. +++.++++.
T Consensus 99 lks~~~--~e~VvfWkWis-~~~l~lVT~-taVyHWsi~~~s~P~kvFdR~~~L-----~~~QIInY~~--d~~~kW~~l 167 (494)
T 1bpo_A 99 MKAHTM--TDDVTFWKWIS-LNTVALVTD-NAVYHWSMEGESQPVKMFDRHSSL-----AGCQIINYRT--DAKQKWLLL 167 (494)
T ss_dssp EEEEEC--SSCCCEEEEEE-TTEEEEECS-SEEEEEESSSSCCCEEEEECCGGG-----TTCEEEEEEE--CTTSSEEEE
T ss_pred hcceec--CCCceEEEecC-CCeEEEEcC-CeeEEecccCCCCchhheecchhc-----ccceEEEEEE--CCCCCeEEE
Confidence 444443 23444444533 344554444 4799999963 3455555544311 0123444444 778887764
Q ss_pred Ee-------CCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCC--C-ceEEEEeC---CCCEEEEECCCC--------e
Q 019405 233 GT-------NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPD--S-FNIYIGNG---SGDLASVDIRTG--------K 291 (341)
Q Consensus 233 ~~-------~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~-~~l~~g~~---dg~i~iwd~~~~--------~ 291 (341)
.+ -.|.+.+|..+... -+.+.+|......+....+ . .+++.+.. .+.++|-++... +
T Consensus 168 ~GI~~~~~~v~G~mQLYS~er~~--sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~k 245 (494)
T 1bpo_A 168 TGISAQQNRVVGAMQLYSVDRKV--SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPK 245 (494)
T ss_dssp EEEEEETTEEEEEEEEEESTTCC--EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCC
T ss_pred EeecccCCcccceEEEeeccccc--cchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccc
Confidence 33 24678899988633 5667777544433333211 1 23333333 278999888532 1
Q ss_pred EEeEEec---cccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeee
Q 019405 292 LLGCFIG---KCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSA 338 (341)
Q Consensus 292 ~~~~~~~---~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 338 (341)
....+.. ...+--.++..++.-..+..-+.-|.|++||+.+|.++..
T Consensus 246 k~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~ 295 (494)
T 1bpo_A 246 KAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM 295 (494)
T ss_dssp EEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred eeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeee
Confidence 1111111 1133455788888888888889999999999999998864
No 313
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.58 E-value=0.16 Score=38.68 Aligned_cols=150 Identities=4% Similarity=-0.114 Sum_probs=80.4
Q ss_pred ceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEE
Q 019405 164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD 243 (341)
Q Consensus 164 ~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd 243 (341)
.+..++|+|++.+.++ .+|.++-.+..+.+...=+.. . ..+...--....++.| .+++.+.++ .||.|+-++
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s-~-t~IG~~Gw~~F~a~~f--D~~G~LYav--~dG~iyr~~ 113 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGR-A-KKIGNGGWNQFQFLFF--DPNGYLYAV--SKDKLYKAS 113 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHH-C-EEEECSCGGGCSEEEE--CTTSCEEEE--ETTEEEEES
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCccccccc-c-cEecccccccceEEEE--CCCCCEEEe--CCCEEEEeC
Confidence 5669999998886666 677777766544211100000 0 0000000011367778 889988777 569998887
Q ss_pred cCCCCce-----eEEE-EecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCe------EEeEEeccccCceeEEEecC
Q 019405 244 TSAQRRP-----VMSF-DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK------LLGCFIGKCSGSIRSIARHP 311 (341)
Q Consensus 244 ~~~~~~~-----~~~~-~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~------~~~~~~~~~~~~i~~~~~~~ 311 (341)
-.+.... -..+ ...=..+..|.+.|+|.+.++. |+.++-....++. ....+-...-.....+.|.+
T Consensus 114 pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~ 191 (236)
T 1tl2_A 114 PPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSS 191 (236)
T ss_dssp CCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECT
T ss_pred CCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECC
Confidence 5332110 0111 1111467899999999766665 7776544333211 01111101122445577899
Q ss_pred CCCEEEEEeCCCcE
Q 019405 312 TLPIIASCGLDSYL 325 (341)
Q Consensus 312 ~~~~l~s~~~dg~v 325 (341)
++.+.+.. ++.+
T Consensus 192 ~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 192 VGTLFGVQ--GGKF 203 (236)
T ss_dssp TSCEEEEE--TTEE
T ss_pred CCcEEEEe--CCeE
Confidence 99877666 6633
No 314
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.56 E-value=0.26 Score=40.93 Aligned_cols=62 Identities=13% Similarity=0.098 Sum_probs=40.8
Q ss_pred CCeEEEEEc-------CCCceEEEEeCCCCEEEEECCCC-eEE--eEEeccccCceeEEEecCCCCEEEEEe
Q 019405 259 TPIKAVAEE-------PDSFNIYIGNGSGDLASVDIRTG-KLL--GCFIGKCSGSIRSIARHPTLPIIASCG 320 (341)
Q Consensus 259 ~~v~~~~~~-------~~~~~l~~g~~dg~i~iwd~~~~-~~~--~~~~~~~~~~i~~~~~~~~~~~l~s~~ 320 (341)
.....++|. .+|.++++....+.|...++... +.. ..+.......+..+++.|||.++++..
T Consensus 259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 356778883 56777777667778888888743 322 223211135789999999998766654
No 315
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.39 E-value=0.27 Score=40.82 Aligned_cols=143 Identities=12% Similarity=0.007 Sum_probs=77.2
Q ss_pred ceEEEEecCCCCEEEEeeCCCeEEEEECCCCce--eeecCCCCCCccCccCCeeeeEEEEEecCC---CCEEEEEeC-C-
Q 019405 164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK--IWTAKPPPKNSLGIFTPTWFTSAAFLSIDD---HRKFVAGTN-D- 236 (341)
Q Consensus 164 ~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~l~~~~~-d- 236 (341)
.-..+++.|+++++++ ..++.|.+++ .++. +..+... .........+++ +|+ +..|.++.. +
T Consensus 32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~------~~g~~~p~gia~--~pdf~~~g~lYv~~~~~~ 100 (352)
T 2ism_A 32 VPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVY------HRGESGLLGLAL--HPRFPQEPYVYAYRTVAE 100 (352)
T ss_dssp CEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCC------CSTTCSEEEEEE--CTTTTTSCEEEEEEEECT
T ss_pred CceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEe------ecCCCCceeEEE--CCCCCCCCEEEEEEecCC
Confidence 4568899999985554 5668999998 3332 2222100 001234788999 776 445554433 2
Q ss_pred ----CeEEEEEcCCCC----cee-EEEEe---cCCCeEEEEEcCCCceEEEEeC-------------CCCEEEEECCCC-
Q 019405 237 ----HQVRLYDTSAQR----RPV-MSFDF---RETPIKAVAEEPDSFNIYIGNG-------------SGDLASVDIRTG- 290 (341)
Q Consensus 237 ----~~i~iwd~~~~~----~~~-~~~~~---~~~~v~~~~~~~~~~~l~~g~~-------------dg~i~iwd~~~~- 290 (341)
+.|..|+..... +.+ ..+.. .......++|.|+|.+.++-+. .|.|.-++....
T Consensus 101 ~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~ 180 (352)
T 2ism_A 101 GGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEP 180 (352)
T ss_dssp TSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSB
T ss_pred CCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCC
Confidence 578888876431 111 11221 1112368999999965555322 145666665420
Q ss_pred -----------eEEeEE-eccccCceeEEEecC-CCCEEEEE
Q 019405 291 -----------KLLGCF-IGKCSGSIRSIARHP-TLPIIASC 319 (341)
Q Consensus 291 -----------~~~~~~-~~~~~~~i~~~~~~~-~~~~l~s~ 319 (341)
.....+ .++ .....++|+| ++.++++-
T Consensus 181 p~~npf~~~~~~~~~i~a~G~--rnp~g~a~d~~~g~l~v~d 220 (352)
T 2ism_A 181 APGNPFLGRRGARPEVYSLGH--RNPQGLAWHPKTGELFSSE 220 (352)
T ss_dssp CTTCTTTTCTTSCTTEEEECC--SEECCCEECTTTCCEEEEE
T ss_pred CCCCcccCCCCCCccEEEEcC--CCcccEEEECCCCCEEEEE
Confidence 011111 122 3467899999 66655544
No 316
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.28 E-value=0.39 Score=39.80 Aligned_cols=200 Identities=11% Similarity=0.048 Sum_probs=101.1
Q ss_pred cCCeEEEeeCCCCc-chheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEE-cc--cceeEEEEeeecccccc
Q 019405 73 KNGLTDILNPLNGD-LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC-TT--KGKASMRSIEVTKVSAE 148 (341)
Q Consensus 73 ~dg~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~--~g~~~i~~~~~~~~~~~ 148 (341)
.+|.|.++|+.+.. ....+.... ..+....-....+..+.... ....|+++ .. +..+.+|.++.....
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g-~~~~~~~f~PhGi~~~~d~d-----g~~~L~Vvnh~~~~s~ielf~~d~~~~~-- 152 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIG-NTLDISSFNPHGISTFIDDD-----NTVYLLVVNHPGSSSTVEVFKFQEEEKS-- 152 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEEC-SSCCGGGCCEEEEEEEECTT-----CCEEEEEEECSTTCCEEEEEEEETTTTE--
T ss_pred CCCeEEEEecCCCCCceEEEEccC-CCCCcCceeeeeeEEEECCC-----CcEEEEEEECCCCCCeEEEEEEECCCCE--
Confidence 68999999987421 122222210 00111123455666655311 01134333 22 456777777543210
Q ss_pred cCCceEEEEEeecCCceEEEEecCCCCEEEEee-----------------CCCeEEEEECCCCceeeecCCCCCCccCcc
Q 019405 149 SSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG-----------------KGVEVNVWDLDKCEKIWTAKPPPKNSLGIF 211 (341)
Q Consensus 149 ~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~-----------------~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~ 211 (341)
...+..+....-.....+.+.++|.+.++.. ..|.|.-+|.. +.......
T Consensus 153 --~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~~~~~~--------- 219 (355)
T 3sre_A 153 --LLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVRVVAEG--------- 219 (355)
T ss_dssp --EEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCEEEEEE---------
T ss_pred --EEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eEEEeecC---------
Confidence 0011112211123467888888888777643 12445555542 11111111
Q ss_pred CCeeeeEEEEEecCCCCEEEEEe-CCCeEEEEEcCCCCc--eeEEEEecCCCeEEEEEcC-CCceEEEEeCC-CCEEEEE
Q 019405 212 TPTWFTSAAFLSIDDHRKFVAGT-NDHQVRLYDTSAQRR--PVMSFDFRETPIKAVAEEP-DSFNIYIGNGS-GDLASVD 286 (341)
Q Consensus 212 ~~~~v~~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~-~~~~l~~g~~d-g~i~iwd 286 (341)
-...+.++| +|+++.|+.+. ..+.|..|++..... ....+. .....-.+++.+ +|.+.+++..+ +.|..|+
T Consensus 220 -l~~pNGia~--spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~ 295 (355)
T 3sre_A 220 -FDFANGINI--SPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGCHPNGMRIFFYD 295 (355)
T ss_dssp -ESSEEEEEE--CTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEEESCHHHHHSCC
T ss_pred -CcccCcceE--CCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCCceEEEeCCCCcEEEEecCCceEEEEEC
Confidence 023678899 99998777654 578999999874221 122332 234556788998 58877766533 3455555
Q ss_pred CC--CCeEEeEEe
Q 019405 287 IR--TGKLLGCFI 297 (341)
Q Consensus 287 ~~--~~~~~~~~~ 297 (341)
.. .+..+..++
T Consensus 296 P~~~~~s~v~rI~ 308 (355)
T 3sre_A 296 AENPPGSEVLRIQ 308 (355)
T ss_dssp TTSCCCEEEEEEE
T ss_pred CCCCCCCEEEEEE
Confidence 44 244454444
No 317
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.25 E-value=0.36 Score=39.18 Aligned_cols=146 Identities=14% Similarity=0.055 Sum_probs=74.9
Q ss_pred CCCEEEEeeCC--------CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeC-C-----Ce
Q 019405 173 SEKFSLFGGKG--------VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-D-----HQ 238 (341)
Q Consensus 173 ~~~~l~~~~~d--------~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-d-----~~ 238 (341)
++++++.|+.+ ..+.+||..+.+-.. +...... . .....+.+ ++.+++.|+. + ..
T Consensus 98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~--r----~~~~~~~~----~~~iyv~GG~~~~~~~~~~ 166 (315)
T 4asc_A 98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGE-SDPLPYV--V----YGHTVLSH----MDLVYVIGGKGSDRKCLNK 166 (315)
T ss_dssp TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEE-CCCCSSC--C----BSCEEEEE----TTEEEEECCBCTTSCBCCC
T ss_pred CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeE-CCCCCCc--c----cceeEEEE----CCEEEEEeCCCCCCcccce
Confidence 56667777642 458899998764222 2111100 0 11112223 5667777765 2 46
Q ss_pred EEEEEcCCCCceeEEEEe---cCCCeEEEEEcCCCceEEEEeCCC-----CEEEEECCCCeEEeEEeccccCceeEEEec
Q 019405 239 VRLYDTSAQRRPVMSFDF---RETPIKAVAEEPDSFNIYIGNGSG-----DLASVDIRTGKLLGCFIGKCSGSIRSIARH 310 (341)
Q Consensus 239 i~iwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~g~~dg-----~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~ 310 (341)
+.+||..+.+ -..+.. .......+.+ ++++++.|+.++ .+.+||+.+.+....-.......-.+++.
T Consensus 167 ~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~- 241 (315)
T 4asc_A 167 MCVYDPKKFE--WKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVS- 241 (315)
T ss_dssp EEEEETTTTE--EEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-
T ss_pred EEEEeCCCCe--EEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEE-
Confidence 8889987642 111111 1111122222 567777777654 48899998875443221110111112222
Q ss_pred CCCCEEEEEeCCC--------------cEEEEEcCCCc
Q 019405 311 PTLPIIASCGLDS--------------YLRFWDIKTRQ 334 (341)
Q Consensus 311 ~~~~~l~s~~~dg--------------~v~iwd~~~~~ 334 (341)
-++.+++.|+.++ .+.+||+++.+
T Consensus 242 ~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 279 (315)
T 4asc_A 242 LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK 279 (315)
T ss_dssp ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred ECCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence 2667777777532 47788988764
No 318
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.08 E-value=0.42 Score=38.39 Aligned_cols=146 Identities=16% Similarity=0.126 Sum_probs=75.7
Q ss_pred CCCEEEEeeCC-----CeEEEEECCCCc---eeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCC-----CeE
Q 019405 173 SEKFSLFGGKG-----VEVNVWDLDKCE---KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-----HQV 239 (341)
Q Consensus 173 ~~~~l~~~~~d-----~~v~i~d~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-----~~i 239 (341)
++.+++.|+.+ ..+.+||+.+.+ -.. +..... +..-.+++. .++.+++.|+.+ ..+
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~-~~~~p~-------~r~~~~~~~---~~~~lyv~GG~~~~~~~~~~ 130 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYS-VAPMNV-------RRGLAGATT---LGDMIYVSGGFDGSRRHTSM 130 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEE-ECCCSS-------CCBSCEEEE---ETTEEEEECCBCSSCBCCEE
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEE-CCCCCC-------CccceeEEE---ECCEEEEEcccCCCcccceE
Confidence 34556666543 468899988765 221 111110 011112222 156677777643 368
Q ss_pred EEEEcCCCCceeEEEEec---CCCeEEEEEcCCCceEEEEeCC-----CCEEEEECCCCeEEeEEeccccCceeEEEecC
Q 019405 240 RLYDTSAQRRPVMSFDFR---ETPIKAVAEEPDSFNIYIGNGS-----GDLASVDIRTGKLLGCFIGKCSGSIRSIARHP 311 (341)
Q Consensus 240 ~iwd~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~g~~d-----g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~ 311 (341)
.+||..+.+ -..+... ......+.+ ++++++.|+.+ ..+.+||+.+.+....-... .......+..-
T Consensus 131 ~~~d~~~~~--W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p-~~r~~~~~~~~ 205 (301)
T 2vpj_A 131 ERYDPNIDQ--WSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMA-TKRSGAGVALL 205 (301)
T ss_dssp EEEETTTTE--EEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCS-SCCBSCEEEEE
T ss_pred EEEcCCCCe--EEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCC-cccccceEEEE
Confidence 889987643 2222211 111122222 66777777754 45899999887654321111 11111111222
Q ss_pred CCCEEEEEeCC-----CcEEEEEcCCCc
Q 019405 312 TLPIIASCGLD-----SYLRFWDIKTRQ 334 (341)
Q Consensus 312 ~~~~l~s~~~d-----g~v~iwd~~~~~ 334 (341)
++.+++.|+.+ ..+.+||+.+.+
T Consensus 206 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 233 (301)
T 2vpj_A 206 NDHIYVVGGFDGTAHLSSVEAYNIRTDS 233 (301)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCEEEEEeCCCCCcccceEEEEeCCCCc
Confidence 66777777764 468999998764
No 319
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=95.99 E-value=1.3 Score=43.18 Aligned_cols=132 Identities=11% Similarity=0.046 Sum_probs=72.2
Q ss_pred EEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEe-c-CCCCEEEEEe----------CCCeEEEEEcCCCCceeEE
Q 019405 186 VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS-I-DDHRKFVAGT----------NDHQVRLYDTSAQRRPVMS 253 (341)
Q Consensus 186 v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~-~~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~ 253 (341)
|++.|..+.+.+..+.-.. ...+.+++... . ....++++|+ ..|.|.+|++...+..+..
T Consensus 809 i~lidp~t~~~i~~~~l~~--------nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~ 880 (1158)
T 3ei3_A 809 LLIIDQHTFEVLHAHQFLQ--------NEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVA 880 (1158)
T ss_dssp EEEEETTTCCEEEEEECCT--------TEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEE
T ss_pred EEEEeCCCCeEEEEEeCCC--------CcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEE
Confidence 5555655555443333222 24455555431 2 2246888876 3478999998753321222
Q ss_pred EEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEE
Q 019405 254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWD 329 (341)
Q Consensus 254 ~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd 329 (341)
-...++++++++-- +|+ |++|- ...|++|++...+.+. .....-..|..+.....+.+++.|..-..|.+..
T Consensus 881 ~~~v~g~v~al~~~-~g~-Lla~i-g~~l~vy~l~~~~~L~-~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~ 952 (1158)
T 3ei3_A 881 EKEVKGAVYSMVEF-NGK-LLASI-NSTVRLYEWTTEKELR-TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLA 952 (1158)
T ss_dssp EEEESSCEEEEEEE-TTE-EEEEE-TTEEEEEEECTTSCEE-EEEEECCCSCEEEEEEETTEEEEEESSBCEEEEE
T ss_pred EEEcCCcCEEEeee-CCE-EEEEc-CCEEEEEECCCCceEE-EEeeccccEEEEEEeccCCEEEEEEhhheEEEEE
Confidence 22346788887643 454 44433 4789999998665443 2111012233333434577888888776666644
No 320
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.98 E-value=0.034 Score=45.73 Aligned_cols=111 Identities=11% Similarity=0.102 Sum_probs=69.4
Q ss_pred CEEEEEeCCCeEEEEEcCCCCceeEEEEec-CCCeEEEEEc--C-CCceEEEE-eCCCCEEEEECCCCeEEeEEeccc--
Q 019405 228 RKFVAGTNDHQVRLYDTSAQRRPVMSFDFR-ETPIKAVAEE--P-DSFNIYIG-NGSGDLASVDIRTGKLLGCFIGKC-- 300 (341)
Q Consensus 228 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~--~-~~~~l~~g-~~dg~i~iwd~~~~~~~~~~~~~~-- 300 (341)
.+++.++.||.|.-+|..+++. +-.+... ..++....-. + ++..++.. +.||.|+.++..+|.....+....
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~-~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHI-IWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEE-EEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcE-EEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 4788889999999999888764 4444432 1222221110 1 23334343 689999999999986655544320
Q ss_pred -cCceeE---EEe-c----CCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 301 -SGSIRS---IAR-H----PTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 301 -~~~i~~---~~~-~----~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
..++.. ... . ..+..+++++.+|.+.-.|+++|+.+.++
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~ 137 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAF 137 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEE
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence 111211 000 0 14557889999999999999999998875
No 321
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.90 E-value=0.59 Score=38.56 Aligned_cols=147 Identities=10% Similarity=-0.035 Sum_probs=80.9
Q ss_pred CceEEEEecCCCCEEEEeeCCCeEEEEECCCCcee--eecCCCCCCccCccCCeeeeEEEEEecCC---CCEEEEE---e
Q 019405 163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI--WTAKPPPKNSLGIFTPTWFTSAAFLSIDD---HRKFVAG---T 234 (341)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~l~~~---~ 234 (341)
..-..+++.|++.++++--..|.|++++..+++.. ..+.... .........+++ +|+ +..|... .
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~-----~~g~~GllGia~--~Pdf~~~g~lYv~yt~~ 104 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVS-----PSGEGGLLGIAL--SPDYASDHMVYAYFTSA 104 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCC-----CBTTBSEEEEEE--CTTHHHHCEEEEEEECS
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCcee-----ecCCCCceeeEe--ccccccCCEEEEEEecC
Confidence 35678999999997777655899999987655432 1121110 011245788999 664 3344432 2
Q ss_pred CCCeEEEEEcCCCC-------ceeE---EEEe-cCCCeEEEEEcCCCceEEEEeC-------------CCCEEEEECCCC
Q 019405 235 NDHQVRLYDTSAQR-------RPVM---SFDF-RETPIKAVAEEPDSFNIYIGNG-------------SGDLASVDIRTG 290 (341)
Q Consensus 235 ~d~~i~iwd~~~~~-------~~~~---~~~~-~~~~v~~~~~~~~~~~l~~g~~-------------dg~i~iwd~~~~ 290 (341)
.++.|.-|.+.... .... .+.. ....-..|.|.|+|.+.++.+. .|.|.-.+....
T Consensus 105 ~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ 184 (347)
T 3das_A 105 SDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGE 184 (347)
T ss_dssp SSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSS
T ss_pred CCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCC
Confidence 34566666655411 1111 1211 1123457999999976666432 345555555421
Q ss_pred ---------eEEeEEeccccCceeEEEecCCCCEEEEE
Q 019405 291 ---------KLLGCFIGKCSGSIRSIARHPTLPIIASC 319 (341)
Q Consensus 291 ---------~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 319 (341)
..+.. .++ .....++|+|+|.++++-
T Consensus 185 ip~~nPf~~~~i~a-~G~--RNp~Gla~dp~G~L~~~d 219 (347)
T 3das_A 185 PAPGNPFPGSPVYS-YGH--RNVQGLAWDDKQRLFASE 219 (347)
T ss_dssp BCTTCSSTTCCEEE-BCC--SBCCEEEECTTCCEEEEE
T ss_pred ccCCCCCCCCeEEe-eCC--CCcceEEECCCCCEEEEe
Confidence 11211 133 346789999988765543
No 322
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=95.87 E-value=0.37 Score=38.88 Aligned_cols=146 Identities=14% Similarity=0.152 Sum_probs=75.1
Q ss_pred CCCEEEEeeCC----CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCC------CeEEEE
Q 019405 173 SEKFSLFGGKG----VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND------HQVRLY 242 (341)
Q Consensus 173 ~~~~l~~~~~d----~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d------~~i~iw 242 (341)
++.+++.|+.+ ..+.+||..+.+-...-..+... .....+.+ ++.+++.|+.+ ..+.+|
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-------~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~ 123 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPR-------DSLAACAA----EGKIYTSGGSEVGNSALYLFECY 123 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCC-------BSCEEEEE----TTEEEEECCBBTTBSCCCCEEEE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccc-------cceeEEEE----CCEEEEECCCCCCCcEeeeEEEE
Confidence 44556666643 57889998876432221111110 11122222 56677777765 458889
Q ss_pred EcCCCCceeEEEEe---cCCCeEEEEEcCCCceEEEEeC---------CCCEEEEECCCCeEEeEEeccccCceeEEEec
Q 019405 243 DTSAQRRPVMSFDF---RETPIKAVAEEPDSFNIYIGNG---------SGDLASVDIRTGKLLGCFIGKCSGSIRSIARH 310 (341)
Q Consensus 243 d~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~g~~---------dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~ 310 (341)
|..+.+ -..+.. .......+. -++++++.|+. -..+.+||+.+.+....-.......-.+++.
T Consensus 124 d~~~~~--W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~- 198 (306)
T 3ii7_A 124 DTRTES--WHTKPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVF- 198 (306)
T ss_dssp ETTTTE--EEEECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-
T ss_pred eCCCCc--eEeCCCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEE-
Confidence 988643 222211 111111222 25666666663 3458999998875433221110111112222
Q ss_pred CCCCEEEEEeCC-----CcEEEEEcCCCc
Q 019405 311 PTLPIIASCGLD-----SYLRFWDIKTRQ 334 (341)
Q Consensus 311 ~~~~~l~s~~~d-----g~v~iwd~~~~~ 334 (341)
-++.+++.|+.+ ..+.+||+.+.+
T Consensus 199 ~~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 227 (306)
T 3ii7_A 199 VKDKIFAVGGQNGLGGLDNVEYYDIKLNE 227 (306)
T ss_dssp ETTEEEEECCEETTEEBCCEEEEETTTTE
T ss_pred ECCEEEEEeCCCCCCCCceEEEeeCCCCc
Confidence 266677777654 368889988754
No 323
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=95.77 E-value=0.49 Score=38.07 Aligned_cols=145 Identities=14% Similarity=0.110 Sum_probs=74.5
Q ss_pred CCCEEEEeeCC-----CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCC-----eEEEE
Q 019405 173 SEKFSLFGGKG-----VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH-----QVRLY 242 (341)
Q Consensus 173 ~~~~l~~~~~d-----~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~-----~i~iw 242 (341)
++.+++.|+.+ ..+.+||..+.+-...-..+... .....+.+ ++.+++.|+.++ .+.+|
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-------~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~ 129 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRR-------STLGAAVL----NGLLYAVGGFDGSTGLSSVEAY 129 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCC-------BSCEEEEE----TTEEEEEEEECSSCEEEEEEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccc-------cceEEEEE----CCEEEEEcCCCCCccCceEEEE
Confidence 45566666643 35888998776432221111100 11122223 567777777553 57788
Q ss_pred EcCCCCceeEEEEecCC--CeEEEEEcCCCceEEEEeCC-------CCEEEEECCCCeEEeE--EeccccCceeEEEecC
Q 019405 243 DTSAQRRPVMSFDFRET--PIKAVAEEPDSFNIYIGNGS-------GDLASVDIRTGKLLGC--FIGKCSGSIRSIARHP 311 (341)
Q Consensus 243 d~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~g~~d-------g~i~iwd~~~~~~~~~--~~~~~~~~i~~~~~~~ 311 (341)
|..+.+ -..+..-.. .-.+++. -++++++.|+.+ ..+.+||+.+.+.... +... ... .+++. -
T Consensus 130 d~~~~~--W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~-~~~~~-~ 203 (302)
T 2xn4_A 130 NIKSNE--WFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTR-RSG-AGVGV-L 203 (302)
T ss_dssp ETTTTE--EEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSC-CBS-CEEEE-E
T ss_pred eCCCCe--EeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccc-ccc-ccEEE-E
Confidence 887643 222211111 1112222 256667776642 4589999988764432 2211 111 12222 2
Q ss_pred CCCEEEEEeCC-----CcEEEEEcCCCc
Q 019405 312 TLPIIASCGLD-----SYLRFWDIKTRQ 334 (341)
Q Consensus 312 ~~~~l~s~~~d-----g~v~iwd~~~~~ 334 (341)
++.+++.|+.+ ..+.+||+.+.+
T Consensus 204 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 231 (302)
T 2xn4_A 204 NNLLYAVGGHDGPLVRKSVEVYDPTTNA 231 (302)
T ss_dssp TTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCC
Confidence 66777777764 368899988754
No 324
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.73 E-value=0.72 Score=38.23 Aligned_cols=149 Identities=9% Similarity=-0.030 Sum_probs=75.6
Q ss_pred ceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCC---CCEEEEEe-C----
Q 019405 164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD---HRKFVAGT-N---- 235 (341)
Q Consensus 164 ~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~l~~~~-~---- 235 (341)
....+++.|+++.++++...|.|++++.. +.....+.... ............+++ +|+ +..|.... .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~--~v~~~g~~g~~gia~--~pdf~~~g~lYv~~~~~~~~ 93 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVP--DVWAHGQGGLLDVVL--APDFAQSRRIWLSYSEVGDD 93 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCC--CCCCSTTCSEEEEEE--CTTHHHHCEEEEEEEEECSS
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCc--ccccCCCCCceeEEE--CCCCCCCCEEEEEEeCCCCC
Confidence 45788999999834445567899999853 33221111110 000011234678899 774 34444432 2
Q ss_pred ---CCeEEEEEcCCCCc---eeE-EEEe------cCCCeEEEEEcCCCceEEEEeC-------------CCCEEEEECCC
Q 019405 236 ---DHQVRLYDTSAQRR---PVM-SFDF------RETPIKAVAEEPDSFNIYIGNG-------------SGDLASVDIRT 289 (341)
Q Consensus 236 ---d~~i~iwd~~~~~~---~~~-~~~~------~~~~v~~~~~~~~~~~l~~g~~-------------dg~i~iwd~~~ 289 (341)
...|..|++..... ... .+.. ....-..++|.|+|.+.++-+. .|.|.-++...
T Consensus 94 g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG 173 (353)
T 2g8s_A 94 GKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQG 173 (353)
T ss_dssp SCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTS
T ss_pred CCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCC
Confidence 23566666653211 011 1111 1112357999999955554332 24566666642
Q ss_pred Ce------------EEeEEeccccCceeEEEecC-CCCEEEE
Q 019405 290 GK------------LLGCFIGKCSGSIRSIARHP-TLPIIAS 318 (341)
Q Consensus 290 ~~------------~~~~~~~~~~~~i~~~~~~~-~~~~l~s 318 (341)
.- ....+... -.....++|+| ++.++++
T Consensus 174 ~~p~~npf~~~~~~~~~i~a~G-~rnp~gl~~d~~~g~l~~~ 214 (353)
T 2g8s_A 174 EIPDDNPFIKESGVRAEIWSYG-IRNPQGMAMNPWSNALWLN 214 (353)
T ss_dssp CCCTTCTTTTSTTSCTTEEEEC-CSEEEEEEEETTTTEEEEE
T ss_pred CCCCCCCCcCCCCCCccEEEEc-CcCccceEEECCCCCEEEE
Confidence 10 11112111 23578899999 5554443
No 325
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=95.70 E-value=1.1 Score=40.35 Aligned_cols=233 Identities=9% Similarity=-0.018 Sum_probs=126.3
Q ss_pred eeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCC
Q 019405 17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGD 96 (341)
Q Consensus 17 ~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 96 (341)
++.++....|+.+++... .. .....+.+ -.....++|.+... .++.+-..++.|+.+++........+..
T Consensus 8 ~Ll~s~~~~I~~i~l~~~--~~-~~~~~~~~-~~~~~~l~~d~~~~---~lywtD~~~~~I~r~~~~g~~~~~v~~~--- 77 (628)
T 4a0p_A 8 FLLFSRRADIRRISLETN--NN-NVAIPLTG-VKEASALDFDVTDN---RIYWTDISLKTISRAFMNGSALEHVVEF--- 77 (628)
T ss_dssp EEEEEETTEEEEEESSCT--TC-EEECCCCS-CSCEEEEEEETTTT---EEEEEETTTTEEEEEETTSCSCEEEECS---
T ss_pred EEEEEeCCcEEEEECCCC--Cc-ceEEEcCC-CCceEEEEEECCCC---EEEEEECCCCeEEEEECCCCCcEEEEeC---
Confidence 455557778888888754 11 11111222 23445666665443 2455556678999998864433222221
Q ss_pred CCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCE
Q 019405 97 SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKF 176 (341)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~ 176 (341)
......++++-...++ .+++-...+.|.+.+++... ..+.+ . ..-.....++++|....
T Consensus 78 -----g~~~P~GlAvD~~~~~-------LY~tD~~~~~I~v~~~dG~~-------~~~l~-~-~~l~~P~~iavdp~~G~ 136 (628)
T 4a0p_A 78 -----GLDYPEGMAVDWLGKN-------LYWADTGTNRIEVSKLDGQH-------RQVLV-W-KDLDSPRALALDPAEGF 136 (628)
T ss_dssp -----SCSCCCEEEEETTTTE-------EEEEETTTTEEEEEETTSTT-------CEEEE-C-SSCCCEEEEEEETTTTE
T ss_pred -----CCCCcceEEEEeCCCE-------EEEEECCCCEEEEEecCCCc-------EEEEE-e-CCCCCcccEEEccCCCe
Confidence 1122334444222221 44555555666666653211 11111 1 22345678999986655
Q ss_pred EEEee--CCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEE-EeCCCeEEEEEcCCCCceeEE
Q 019405 177 SLFGG--KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA-GTNDHQVRLYDTSAQRRPVMS 253 (341)
Q Consensus 177 l~~~~--~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~ 253 (341)
|+... ..+.|...++........+.. -.+...+++ ++++..|.. -...+.|..+|+..... ..
T Consensus 137 lY~tD~g~~~~I~r~~~dG~~~~~l~~~----------~~~P~Glal--D~~~~~LY~aD~~~~~I~~~d~dG~~~--~v 202 (628)
T 4a0p_A 137 MYWTEWGGKPKIDRAAMDGSERTTLVPN----------VGRANGLTI--DYAKRRLYWTDLDTNLIESSNMLGLNR--EV 202 (628)
T ss_dssp EEEEECSSSCEEEEEETTSCSCEEEECS----------CSSEEEEEE--ETTTTEEEEEETTTTEEEEEETTSCSC--EE
T ss_pred EEEeCCCCCCEEEEEeCCCCceEEEECC----------CCCcceEEE--ccccCEEEEEECCCCEEEEEcCCCCce--EE
Confidence 55544 246788888764332222221 134778899 776555554 45567899999876443 33
Q ss_pred EEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeE
Q 019405 254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGC 295 (341)
Q Consensus 254 ~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~ 295 (341)
+...-.....+++.. +.++++-...+.|...|..+++....
T Consensus 203 ~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~ 243 (628)
T 4a0p_A 203 IADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTI 243 (628)
T ss_dssp EEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEE
T ss_pred eeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEE
Confidence 333334456788765 44444545578899999877654333
No 326
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.44 E-value=1 Score=44.38 Aligned_cols=193 Identities=9% Similarity=0.093 Sum_probs=103.3
Q ss_pred eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCC-CceeeecCCC
Q 019405 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDK-CEKIWTAKPP 203 (341)
Q Consensus 125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~-~~~~~~~~~~ 203 (341)
.+++--...++.|++++.... ++.+.. ..+|.--.|-. .+.|+..+. ..|+-|++.. ..+...+..+
T Consensus 78 ~iiALrag~~lQiFnl~~k~k--------lks~~~--~e~VvfWkWis-~~~l~lVT~-~aVyHW~~~~~s~P~k~fdR~ 145 (1630)
T 1xi4_A 78 KVIALKAGKTLQIFNIEMKSK--------MKAHTM--TDDVTFWKWIS-LNTVALVTD-NAVYHWSMEGESQPVKMFDRH 145 (1630)
T ss_pred ceEEEecCCeEEEeehHHhhh--------hccccc--CCCceEEEecC-CCeeEEEcC-CeEEEeccCCCCccHHHHhcc
Confidence 344444477899999876542 222222 12333334432 334444443 3799999963 3444444433
Q ss_pred CCCccCccCCeeeeEEEEEecCCCCEEEEEe-------CCCeEEEEEcCCCCceeEEEEecCCCeEEEEEc--CCC-ceE
Q 019405 204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-------NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEE--PDS-FNI 273 (341)
Q Consensus 204 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-------~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~--~~~-~~l 273 (341)
..-. ...|..-.. +++.++++..+ -.|.+.+|...... -+.+.+|......+... +.. ..+
T Consensus 146 ~~L~-----~~QIinY~~--d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~--sQ~iegha~~F~~~~~~~~~~~~~l~ 216 (1630)
T 1xi4_A 146 SSLA-----GCQIINYRT--DAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV--SQPIEGHAASFAQFKMEGNAEESTLF 216 (1630)
T ss_pred hhcc-----cCeeEEeee--CCCCCeEEEEeeccCCCcccceeeeeeccccc--chhhhHhHhhhheeccCCCCCCceEE
Confidence 2110 122333333 67777766433 34788999887633 45556665443333332 111 222
Q ss_pred EEEeC---CCCEEEEECCCC---eE------EeEEecc--ccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeee
Q 019405 274 YIGNG---SGDLASVDIRTG---KL------LGCFIGK--CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSA 338 (341)
Q Consensus 274 ~~g~~---dg~i~iwd~~~~---~~------~~~~~~~--~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 338 (341)
+.+.. .+.++|-++... .. +..+-.+ ..+--.++..++.-..+..-+.-|.|.++|+.||.++..
T Consensus 217 ~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~ 295 (1630)
T 1xi4_A 217 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM 295 (1630)
T ss_pred EEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhh
Confidence 22221 367888887432 11 1111110 123344677777777888888999999999999988753
No 327
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.42 E-value=0.93 Score=37.44 Aligned_cols=55 Identities=9% Similarity=-0.008 Sum_probs=29.6
Q ss_pred CEEEEECCCCeE--EeEEeccccCceeEEEecCCCCEEEEEeCCC------cEEEEEcCCCceeee
Q 019405 281 DLASVDIRTGKL--LGCFIGKCSGSIRSIARHPTLPIIASCGLDS------YLRFWDIKTRQLLSA 338 (341)
Q Consensus 281 ~i~iwd~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg------~v~iwd~~~~~~~~~ 338 (341)
.+.+||+.+.+. +..+... ... ..+...++++++.|+.++ .|.++++++++.+..
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~-r~~--~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~ 348 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQG-RAY--GVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQ 348 (357)
T ss_dssp CCEEEECC---CEEEEECSSC-CBS--SEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEE
T ss_pred eEEEEecCCCceeeCCCCCCC-ccc--ceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEee
Confidence 578999886543 3333322 111 222334677888888553 466678888876653
No 328
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=95.25 E-value=0.24 Score=41.18 Aligned_cols=101 Identities=18% Similarity=0.158 Sum_probs=60.2
Q ss_pred eeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEE---ecCCCeEEEEEcCC---CceEEEEeC----C----CC
Q 019405 216 FTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD---FRETPIKAVAEEPD---SFNIYIGNG----S----GD 281 (341)
Q Consensus 216 v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~~~~~v~~~~~~~~---~~~l~~g~~----d----g~ 281 (341)
...++| .|++++ +++..++.|+++|. .++..+..+. ........++++|+ +..|+++.. + +.
T Consensus 31 P~~ia~--~pdG~l-~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 31 PWSIAP--LGGGRY-LVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp EEEEEE--EETTEE-EEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CeEEEE--cCCCeE-EEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 678889 678864 45566799999973 3332222211 12345789999997 445555443 2 56
Q ss_pred EEEEECCCC-------eEE-eEEeccccCceeEEEecCCCCEEEEEe
Q 019405 282 LASVDIRTG-------KLL-GCFIGKCSGSIRSIARHPTLPIIASCG 320 (341)
Q Consensus 282 i~iwd~~~~-------~~~-~~~~~~~~~~i~~~~~~~~~~~l~s~~ 320 (341)
|..|+.... +.+ ..+..........|+|.|+|.++++.+
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G 153 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG 153 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence 777876643 111 223321112346799999998777654
No 329
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=94.91 E-value=0.66 Score=37.49 Aligned_cols=104 Identities=13% Similarity=0.079 Sum_probs=56.0
Q ss_pred CCCEEEEEeCC-----CeEEEEEcCCCCceeEEEEe---cCCCeEEEEEcCCCceEEEEeCC-----CCEEEEECCCCeE
Q 019405 226 DHRKFVAGTND-----HQVRLYDTSAQRRPVMSFDF---RETPIKAVAEEPDSFNIYIGNGS-----GDLASVDIRTGKL 292 (341)
Q Consensus 226 ~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~g~~d-----g~i~iwd~~~~~~ 292 (341)
++.+++.|+.+ ..+.+||..+.+ -..+.. .......+.+ ++.+++.|+.+ ..+.+||+.+.+.
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 196 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDE--WHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEW 196 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTE--EEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEE
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCe--EeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeE
Confidence 56677776643 357888887643 111111 1111122222 56677777754 4589999987754
Q ss_pred EeEEeccccCceeEEEecCCCCEEEEEeCC-----CcEEEEEcCCCc
Q 019405 293 LGCFIGKCSGSIRSIARHPTLPIIASCGLD-----SYLRFWDIKTRQ 334 (341)
Q Consensus 293 ~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-----g~v~iwd~~~~~ 334 (341)
...-.......-.+++.. ++.+++.|+.+ ..+.+||+.+.+
T Consensus 197 ~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 242 (308)
T 1zgk_A 197 RMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETET 242 (308)
T ss_dssp EECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred eeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence 322111101111122222 66777777765 468999988754
No 330
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.89 E-value=1.7 Score=37.49 Aligned_cols=109 Identities=10% Similarity=0.000 Sum_probs=59.4
Q ss_pred ceEEEEecCCCCEEEEeeCCCeEEEEECCCCcee--eecCCCCCCccCccCCeeeeEEEEEecCC---CCEEEEEeC---
Q 019405 164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI--WTAKPPPKNSLGIFTPTWFTSAAFLSIDD---HRKFVAGTN--- 235 (341)
Q Consensus 164 ~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~l~~~~~--- 235 (341)
....++|.|+|+++++-...+.|++++..+++.. ..+...... .........++| +|+ +..|.....
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~---~~g~~Gllgia~--~Pdf~~~g~lYv~~s~~~ 102 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVND---ADGQNGLLGFAF--HPDFKNNPYIYISGTFKN 102 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCC---TTSSCSEEEEEE--CTTTTTSCEEEEEEEEEC
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccc---cCCCCceeEEEE--CCCcCcCCEEEEEEeccc
Confidence 4568999999987776544457888876555432 222211000 001244778999 674 444444432
Q ss_pred ----------CCeEEEEEcCCCC----ceeEEE---Ee-cCCCeEEEEEcCCCceEEEEe
Q 019405 236 ----------DHQVRLYDTSAQR----RPVMSF---DF-RETPIKAVAEEPDSFNIYIGN 277 (341)
Q Consensus 236 ----------d~~i~iwd~~~~~----~~~~~~---~~-~~~~v~~~~~~~~~~~l~~g~ 277 (341)
...|.-|+..... .....+ .. .......|+|.|+|.+.++.+
T Consensus 103 ~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 103 PKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp TTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred cCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 2356666654321 111112 11 123468899999997666543
No 331
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=94.78 E-value=0.19 Score=38.30 Aligned_cols=105 Identities=6% Similarity=-0.059 Sum_probs=63.4
Q ss_pred eeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCc-----eeEEEEe-cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCC
Q 019405 216 FTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR-----PVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT 289 (341)
Q Consensus 216 v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-----~~~~~~~-~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~ 289 (341)
+..++| +|++.+.++ .+|.++-.+..+... .-..+-. .-..-.++.|.|+|.+.++ .||.|+-++..+
T Consensus 43 ~~~laf--~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 43 FKFLFL--SPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp CSEEEE--CTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred ceeEEE--CCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 678999 788887666 678777666544211 1111110 0011468899999977766 569998887643
Q ss_pred CeEE------eEEeccccCceeEEEecCCCCEEEEEeCCCcEEEE
Q 019405 290 GKLL------GCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFW 328 (341)
Q Consensus 290 ~~~~------~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iw 328 (341)
...- ..+-...=..+..|.+.|+|.+.+.. |+.++-+
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~ 159 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKA 159 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEE
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEec
Confidence 2110 11111002467899999999877776 7765443
No 332
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=94.76 E-value=1.3 Score=35.79 Aligned_cols=145 Identities=14% Similarity=0.139 Sum_probs=73.9
Q ss_pred CCCEEEEeeCC-------CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeC------CCeE
Q 019405 173 SEKFSLFGGKG-------VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN------DHQV 239 (341)
Q Consensus 173 ~~~~l~~~~~d-------~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~------d~~i 239 (341)
++++++.|+.+ ..+.+||..+.+-...-..+.. ..-.+++. .++.+++.|+. -..+
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--------r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~ 177 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIK--------VYGHNVIS---HNGMIYCLGGKTDDKKCTNRV 177 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSC--------EESCEEEE---ETTEEEEECCEESSSCBCCCE
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCc--------ccccEEEE---ECCEEEEEcCCCCCCCccceE
Confidence 56677777753 3588889876543222111110 11112222 25667777664 2358
Q ss_pred EEEEcCCCCceeEEEEecC--CCeEEEEEcCCCceEEEEeCC-----CCEEEEECCCCeEEe--EEeccccCceeEEEec
Q 019405 240 RLYDTSAQRRPVMSFDFRE--TPIKAVAEEPDSFNIYIGNGS-----GDLASVDIRTGKLLG--CFIGKCSGSIRSIARH 310 (341)
Q Consensus 240 ~iwd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~g~~d-----g~i~iwd~~~~~~~~--~~~~~~~~~i~~~~~~ 310 (341)
.+||..+.+ -..+.... ..-.+++. -++++++.|+.+ ..+.+||+.+.+... .+... ... .+++ .
T Consensus 178 ~~yd~~~~~--W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~-~~~~-~ 251 (318)
T 2woz_A 178 FIYNPKKGD--WKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQE-RSS-ISLV-S 251 (318)
T ss_dssp EEEETTTTE--EEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSC-CBS-CEEE-E
T ss_pred EEEcCCCCE--EEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCc-ccc-eEEE-E
Confidence 899988743 22221111 11112222 256677777654 347789988765432 22211 111 1222 2
Q ss_pred CCCCEEEEEeCC--------------CcEEEEEcCCCc
Q 019405 311 PTLPIIASCGLD--------------SYLRFWDIKTRQ 334 (341)
Q Consensus 311 ~~~~~l~s~~~d--------------g~v~iwd~~~~~ 334 (341)
-++.+++.|+.+ ..+.+||+.+.+
T Consensus 252 ~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 289 (318)
T 2woz_A 252 LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE 289 (318)
T ss_dssp ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence 356777777654 358889988754
No 333
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=94.69 E-value=1.3 Score=35.73 Aligned_cols=104 Identities=14% Similarity=0.071 Sum_probs=55.3
Q ss_pred CCCEEEEEeCC--------CeEEEEEcCCCCceeEEEEe-cCC-CeEEEEEcCCCceEEEEeC-C-----CCEEEEECCC
Q 019405 226 DHRKFVAGTND--------HQVRLYDTSAQRRPVMSFDF-RET-PIKAVAEEPDSFNIYIGNG-S-----GDLASVDIRT 289 (341)
Q Consensus 226 ~~~~l~~~~~d--------~~i~iwd~~~~~~~~~~~~~-~~~-~v~~~~~~~~~~~l~~g~~-d-----g~i~iwd~~~ 289 (341)
++.+++.|+.+ ..+.+||..+.+ -..+.. ... .-.+++. -++++++.|+. + ..+.+||+.+
T Consensus 98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~ 174 (315)
T 4asc_A 98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFK--WGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKK 174 (315)
T ss_dssp TTEEEEECCEESSTTCCBCCCEEEEETTTTE--EEECCCCSSCCBSCEEEE-ETTEEEEECCBCTTSCBCCCEEEEETTT
T ss_pred CCEEEEEeCCcCCCCCcccceEEEECCCCCc--EeECCCCCCcccceeEEE-ECCEEEEEeCCCCCCcccceEEEEeCCC
Confidence 56677776632 458888887643 111111 000 1112222 35667777776 2 4699999988
Q ss_pred CeEEeEEeccccCce-eEEEecCCCCEEEEEeCCC-----cEEEEEcCCCc
Q 019405 290 GKLLGCFIGKCSGSI-RSIARHPTLPIIASCGLDS-----YLRFWDIKTRQ 334 (341)
Q Consensus 290 ~~~~~~~~~~~~~~i-~~~~~~~~~~~l~s~~~dg-----~v~iwd~~~~~ 334 (341)
.+....-... .... .+++. -++.+++.|+.++ .+.+||+.+.+
T Consensus 175 ~~W~~~~~~p-~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 175 FEWKELAPMQ-TARSLFGATV-HDGRIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp TEEEECCCCS-SCCBSCEEEE-ETTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred CeEEECCCCC-CchhceEEEE-ECCEEEEEeccCCCCccceEEEEECCCCe
Confidence 7543321111 1111 12222 2667777777654 57888987754
No 334
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=93.83 E-value=3.6 Score=37.06 Aligned_cols=157 Identities=8% Similarity=-0.091 Sum_probs=88.2
Q ss_pred CceEEEEecCC-CCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCC-CCEEEEEe-CCCeE
Q 019405 163 GTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD-HRKFVAGT-NDHQV 239 (341)
Q Consensus 163 ~~i~~~~~~~~-~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~-~d~~i 239 (341)
.....++++.. +++.++-+..+.|.+.++..... ..+.... -.....+++ .|. +.++++-. ....|
T Consensus 392 ~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~-~~l~~~~--------l~~P~~iav--dp~~G~ly~tD~g~~~~I 460 (619)
T 3s94_A 392 AHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMR-KILISED--------LEEPRAIVL--DPMVGYMYWTDWGEIPKI 460 (619)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECTT--------CCSEEEEEE--ETTTTEEEEEECSSSCEE
T ss_pred CCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeE-EEEEECC--------CCCeeeEEE--EcCCCcEEEecCCCCCEE
Confidence 34567888864 44555555678899998864432 2222111 133678888 665 44444432 23677
Q ss_pred EEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeC-CCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEE
Q 019405 240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIAS 318 (341)
Q Consensus 240 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 318 (341)
...++..... .......-.....+++++++..|+.+.. .+.|..+++........+... -....+|+...+ .++.+
T Consensus 461 ~r~~~dG~~~-~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~-l~~P~glav~~~-~ly~t 537 (619)
T 3s94_A 461 ERAALDGSDR-VVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDK-IPHIFGFTLLGD-YVYWT 537 (619)
T ss_dssp EEEETTSCSC-EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEECC-CCSSCCEEEETT-EEEEE
T ss_pred EEEccCCCcc-EEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEEEeccC-CCCcEEEEEECC-EEEEe
Confidence 7777764332 2222223346789999987766766654 467999988643222222221 223345666533 34444
Q ss_pred EeCCCcEEEEEcCCC
Q 019405 319 CGLDSYLRFWDIKTR 333 (341)
Q Consensus 319 ~~~dg~v~iwd~~~~ 333 (341)
-...+.|...|..+|
T Consensus 538 D~~~~~I~~~~k~~g 552 (619)
T 3s94_A 538 DWQRRSIERVHKRSA 552 (619)
T ss_dssp CTTSSCEEEEESSSC
T ss_pred ecCCCeEEEEEcCCC
Confidence 445567777777766
No 335
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=93.58 E-value=2.2 Score=33.86 Aligned_cols=160 Identities=13% Similarity=0.029 Sum_probs=91.5
Q ss_pred eeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccC
Q 019405 16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAG 95 (341)
Q Consensus 16 ~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 95 (341)
.++.++.+|.+....+++-+.+.+.-+ +. ....+..+. ..+. +.++++..+.+|.|+...+.+-. .. -.+..
T Consensus 37 ~ll~fT~~G~v~~~~~~~lp~~~~~~l--l~-~~e~i~~v~-~~~~--~~~~~v~~T~~G~iKr~~l~~~~-~~-~~G~~ 108 (276)
T 3no0_A 37 GLFLVSNRGRVYWIAGSQALQGSKVSL--KS-REEKIVGAF-IREK--FGNRLLLATKKGYVKKIPLAEFE-YK-AQGMP 108 (276)
T ss_dssp CEEEEETTSEEEEECSHHHHTSEECCC--SS-TTCCEEEEE-EGGG--SCSEEEEEETTSEEEEEEGGGTT-TC-STTEE
T ss_pred EEEEEcCCCeEEEEEhhhCccCccccc--CC-CCCEEEEEE-CCcC--CCCEEEEEeCCCEEEEEEHHHhh-hh-cCCeE
Confidence 467778888887666555332211111 32 233333332 2221 23579999999999999875533 11 11111
Q ss_pred CCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCC
Q 019405 96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK 175 (341)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~ 175 (341)
... -..++.+..+...+.+. .++..+..|.+..+.+..-+... ....-++..++..+..|..+...+++.
T Consensus 109 ~i~-lkegD~l~~~~~~~~~~--------~ill~T~~G~~~r~~~~eip~~g-R~a~Gv~~i~L~~~d~vv~~~~~~~~~ 178 (276)
T 3no0_A 109 IIK-LTEGDEVVSIASSVDET--------HILLFTKKGRVARFSVREVPPST-PGARGVQGIKLEKNDETSGLRIWNGEP 178 (276)
T ss_dssp CSC-CCTTCCEEEEEECCSSC--------EEEEEETTSEEEEEEGGGSCBCC-TTCCCEECCCCCTTCCEEEEEEESSCS
T ss_pred EEe-cCCCCEEEEEEEeCCCC--------EEEEEECCCEEEEEEhhhCCCcC-CCCCCEEEEccCCCCEEEEEEEeCCCC
Confidence 111 12346676666555444 78888888988877765443321 111223444555566676666555667
Q ss_pred EEEEeeCCCeEEEEECCC
Q 019405 176 FSLFGGKGVEVNVWDLDK 193 (341)
Q Consensus 176 ~l~~~~~d~~v~i~d~~~ 193 (341)
.++..+..|.++...+..
T Consensus 179 ~ll~~T~~G~~kr~~~~e 196 (276)
T 3no0_A 179 YLLVITAKGRVKKISHEE 196 (276)
T ss_dssp EEEEEETTSCEEEEEGGG
T ss_pred EEEEEeCCCcEEEeEHHH
Confidence 888889999998887643
No 336
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=93.52 E-value=2.8 Score=34.70 Aligned_cols=65 Identities=9% Similarity=0.027 Sum_probs=42.4
Q ss_pred CCeEEEEEcC-------CCceEEEEeCCCCEEEEECCCCeEEeE--EeccccCceeEEEecCCCCEEEEEe-CCC
Q 019405 259 TPIKAVAEEP-------DSFNIYIGNGSGDLASVDIRTGKLLGC--FIGKCSGSIRSIARHPTLPIIASCG-LDS 323 (341)
Q Consensus 259 ~~v~~~~~~~-------~~~~l~~g~~dg~i~iwd~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~s~~-~dg 323 (341)
.....+.|.. ++.++++....+.|...++..++.... +.......+..+++.|+|.++++.. .+|
T Consensus 271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g 345 (353)
T 2g8s_A 271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSG 345 (353)
T ss_dssp CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTE
T ss_pred cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCC
Confidence 3567788753 467777766778888888876654332 2111134789999999998666543 344
No 337
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=93.48 E-value=2.6 Score=34.34 Aligned_cols=146 Identities=8% Similarity=-0.045 Sum_probs=77.8
Q ss_pred ceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEE
Q 019405 164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD 243 (341)
Q Consensus 164 ~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd 243 (341)
.+..+.+.+++..++.+ .++.|.. ..+.++.-....... ...+..+.+ .+++.+++.+...+..+-.|
T Consensus 123 ~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~--------~~~~~~~~~--~~~~~~~~~g~~G~~~~S~d 190 (327)
T 2xbg_A 123 SPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQEA--------IGVMRNLNR--SPSGEYVAVSSRGSFYSTWE 190 (327)
T ss_dssp CEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECSC--------CCCEEEEEE--CTTSCEEEEETTSSEEEEEC
T ss_pred CeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecCC--------CcceEEEEE--cCCCcEEEEECCCcEEEEeC
Confidence 45666666666655554 4554422 122233222222111 134778888 67777776664433333333
Q ss_pred cCCCCceeEEE-EecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEecc---ccCceeEEEecCCCCEEEEE
Q 019405 244 TSAQRRPVMSF-DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK---CSGSIRSIARHPTLPIIASC 319 (341)
Q Consensus 244 ~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~s~ 319 (341)
-. +.. -..+ ......+..+.+.+++..++ .+.+|.+++.+...++.-..+... ....+..+++.+++.+++.+
T Consensus 191 ~g-G~t-W~~~~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g 267 (327)
T 2xbg_A 191 PG-QTA-WEPHNRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG 267 (327)
T ss_dssp TT-CSS-CEEEECCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE
T ss_pred CC-CCc-eeECCCCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe
Confidence 21 121 1111 23445788899999886654 456787777653334433222211 12358899999887766665
Q ss_pred eCCCcE
Q 019405 320 GLDSYL 325 (341)
Q Consensus 320 ~~dg~v 325 (341)
.++.|
T Consensus 268 -~~g~i 272 (327)
T 2xbg_A 268 -GAGAL 272 (327)
T ss_dssp -STTCE
T ss_pred -CCCeE
Confidence 46666
No 338
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=93.36 E-value=2.6 Score=33.98 Aligned_cols=137 Identities=4% Similarity=-0.091 Sum_probs=76.1
Q ss_pred EecCCCCEEEEeeCC--------------CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEe
Q 019405 169 KVDISEKFSLFGGKG--------------VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT 234 (341)
Q Consensus 169 ~~~~~~~~l~~~~~d--------------~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 234 (341)
-+++++++|+.+... ..|+..++...+....... .+..+ ++++++|+-..
T Consensus 59 ~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~--------------~~~~~--s~~g~~Iy~~~ 122 (302)
T 3s25_A 59 YINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPD--------------PCIYA--SLIGNYIYYLH 122 (302)
T ss_dssp EEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECS--------------CEEEE--EEETTEEEEEE
T ss_pred eEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecC--------------CccEE--EEeCCEEEEEe
Confidence 345677777766543 3567777765543222111 11245 55777877665
Q ss_pred ----CCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeC-CCCEEEEECCCCeEEeEEeccccCceeEEEe
Q 019405 235 ----NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SGDLASVDIRTGKLLGCFIGKCSGSIRSIAR 309 (341)
Q Consensus 235 ----~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~ 309 (341)
.+..|+..++.... ...+..+.. ..++|+++.|+-.+. ...|+.-++..+.....+.+ ... ..+
T Consensus 123 ~~~~~~~~Iy~~~~dGs~--~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~----~~~-~~~ 191 (302)
T 3s25_A 123 YDTQTATSLYRIRIDGEE--KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC----NCY-KPV 191 (302)
T ss_dssp ESSSSCEEEEEEETTSCC--CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS----CEE-EEE
T ss_pred ecCCCCceEEEEECCCCC--eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC----Ccc-cee
Confidence 34456666665432 444554432 456778888775554 67888888876654433332 222 235
Q ss_pred cCCCCEEEEEeCC--CcEEEEEcCC
Q 019405 310 HPTLPIIASCGLD--SYLRFWDIKT 332 (341)
Q Consensus 310 ~~~~~~l~s~~~d--g~v~iwd~~~ 332 (341)
+|++.+|+-...+ ..|..-++..
T Consensus 192 ~P~g~~iy~t~~~~~~~I~~~~ldG 216 (302)
T 3s25_A 192 VLDDTNVYYMDVNRDNAIVHVNINN 216 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEECSSS
T ss_pred eecCCEEEEEEcCCCcEEEEEECCC
Confidence 5888877665543 2455555543
No 339
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=93.30 E-value=4.8 Score=36.84 Aligned_cols=116 Identities=11% Similarity=0.084 Sum_probs=61.5
Q ss_pred CCCCEEEEeeCCC--eEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCC-CCEEEEEeC--C-----CeEEE
Q 019405 172 ISEKFSLFGGKGV--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD-HRKFVAGTN--D-----HQVRL 241 (341)
Q Consensus 172 ~~~~~l~~~~~d~--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~--d-----~~i~i 241 (341)
.++++++.|+.++ .+.+||..+.+=.. +......+.. .....++.+ ..+ +.+++.|+. + ..+.+
T Consensus 499 ~~~~iyv~GG~~~~~~v~~yd~~t~~W~~-~~~~g~~p~~---r~~~~a~v~--~~~~~~iyv~GG~~~~~~~~~~~v~~ 572 (695)
T 2zwa_A 499 PDGNVLILGGVTEGPAMLLYNVTEEIFKD-VTPKDEFFQN---SLVSAGLEF--DPVSKQGIILGGGFMDQTTVSDKAII 572 (695)
T ss_dssp TTSCEEEECCBCSSCSEEEEETTTTEEEE-CCCSSGGGGS---CCBSCEEEE--ETTTTEEEEECCBCTTSSCBCCEEEE
T ss_pred cCCEEEEECCCCCCCCEEEEECCCCceEE-ccCCCCCCCc---ccceeEEEE--eCCCCEEEEECCcCCCCCeeeCcEEE
Confidence 3778888887754 68999998754222 2110000000 011222444 333 667777765 2 46889
Q ss_pred EEcCCCCc--e--eEEEEe---cCCCeEEEEEcCCCceEEEEeC--------CCCEEEEECCCCeEE
Q 019405 242 YDTSAQRR--P--VMSFDF---RETPIKAVAEEPDSFNIYIGNG--------SGDLASVDIRTGKLL 293 (341)
Q Consensus 242 wd~~~~~~--~--~~~~~~---~~~~v~~~~~~~~~~~l~~g~~--------dg~i~iwd~~~~~~~ 293 (341)
||+.+..- . ...+.. ....-.+++...++++++.|+. ...+.+||+.+.+..
T Consensus 573 yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 573 FKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp EEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred EEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 99887540 0 112211 1111112333333677777774 345999999987664
No 340
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=93.27 E-value=2.7 Score=33.93 Aligned_cols=105 Identities=17% Similarity=0.216 Sum_probs=54.5
Q ss_pred CCCEEEEEeCC-------CeEEEEEcCCCCceeEEEEecCCCe--EEEEEcCCCceEEEEeC------CCCEEEEECCCC
Q 019405 226 DHRKFVAGTND-------HQVRLYDTSAQRRPVMSFDFRETPI--KAVAEEPDSFNIYIGNG------SGDLASVDIRTG 290 (341)
Q Consensus 226 ~~~~l~~~~~d-------~~i~iwd~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~g~~------dg~i~iwd~~~~ 290 (341)
++.+++.|+.+ ..+.+||..+.+ -..+..-..+. .+++. .++++++.|+. -..+.+||+.+.
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~ 185 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAK--WSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKG 185 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTE--EEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTT
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCC--EeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCC
Confidence 56677777754 347788887643 22221111110 11222 36667777764 245999999887
Q ss_pred eEEeEEeccccCceeEEEecCCCCEEEEEeCC-----CcEEEEEcCCCc
Q 019405 291 KLLGCFIGKCSGSIRSIARHPTLPIIASCGLD-----SYLRFWDIKTRQ 334 (341)
Q Consensus 291 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-----g~v~iwd~~~~~ 334 (341)
+....-.......-.+++. -++.+++.|+.+ ..+.+||+.+.+
T Consensus 186 ~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 186 DWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp EEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred EEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCe
Confidence 6433211110111112222 256777777643 256788887754
No 341
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=93.05 E-value=3 Score=33.75 Aligned_cols=254 Identities=8% Similarity=0.009 Sum_probs=126.0
Q ss_pred CCceEEEEccCCeEEEeeCCCCcchhee-eccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeee
Q 019405 64 NDPLLAVARKNGLTDILNPLNGDLRVAI-SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEV 142 (341)
Q Consensus 64 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~ 142 (341)
+.+++++.+.+|.|+--.+.+-+....- .+.... ....++.+..+...+.+. .++..+..|.+.-..+..
T Consensus 2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~-~~ke~D~l~~~~~~~~~~--------~ll~fT~~G~~~~~~~~e 72 (307)
T 1zi0_A 2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAA-RIKEEDFIDRLLVANTHD--------HILCFSSRGRVYSMKVYQ 72 (307)
T ss_dssp CCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTC--------EEEEEETTSEEEEEEGGG
T ss_pred CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceee-eeCCCCEEEEEEEECCCC--------EEEEEECCCEEEEEEhhH
Confidence 3457888999999988776543221110 000000 012346666655555555 677777788766555433
Q ss_pred cccccccCCceE--EEEEeecCCceEEEEe-c--CCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeee
Q 019405 143 TKVSAESSCSTV--KSWNVCASGTIAFSKV-D--ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFT 217 (341)
Q Consensus 143 ~~~~~~~~~~~v--~~~~~~~~~~i~~~~~-~--~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~ 217 (341)
-+.......|.- ....+..+..|..+.. . .++.+++..+..|.++--.+..-..... .....+.+...+.+-
T Consensus 73 lp~~~~~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r---~G~~~i~l~~~d~lv 149 (307)
T 1zi0_A 73 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRT---AGKVAIKLVDGDELI 149 (307)
T ss_dssp SCCCCSSSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCT---TCEESSCCCTTCCEE
T ss_pred CcCCCCCCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhcccc---CCeEEEEECCCCEEE
Confidence 332211112210 1223334445555533 2 3456788899999999887642211110 000001111113344
Q ss_pred EEEEEecCCCCEEEEEeCCCeEEEEEcCCCCc------eeEEEEe-cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCC
Q 019405 218 SAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR------PVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG 290 (341)
Q Consensus 218 ~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~------~~~~~~~-~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~ 290 (341)
.+.. ..+...++..+.+|.+..++...-.. -+..+.. ....|.++..-+++..+++.+..|.++-.++...
T Consensus 150 ~~~~--~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~ 227 (307)
T 1zi0_A 150 GVDL--TSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEY 227 (307)
T ss_dssp EEEE--ECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGS
T ss_pred EEEE--eCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHh
Confidence 4444 23445677778889888887643110 1111111 2345666655455567888888888888776321
Q ss_pred ---------eEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405 291 ---------KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (341)
Q Consensus 291 ---------~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 332 (341)
.....+... .+.+..+....+...++..+.+|.+.-+++..
T Consensus 228 ~~~~Rg~kG~~~~~~~~~-~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 228 PTKSRATKGVISIKVTER-NGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp CCCCTTSCCEESSCCCTT-TCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred ccCCCCCCCEEeeEecCC-CCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 122223222 34555554433445555666777766666543
No 342
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=93.04 E-value=3.1 Score=33.92 Aligned_cols=255 Identities=11% Similarity=0.055 Sum_probs=123.9
Q ss_pred eeeecCCCCeEEEEEecCc-cCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEe---eCCCCcchheee
Q 019405 17 ALTFDSLGLIKVIEARGEH-GGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDIL---NPLNGDLRVAIS 92 (341)
Q Consensus 17 ~~~~~~~g~i~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw---~~~~~~~~~~~~ 92 (341)
+++.+.+|.||...+..-. .+. ....+.+.+.-+.....+... .|+..+..|.+.-. ++........=.
T Consensus 8 ~v~lT~~G~IKr~~~~~~~~~~~--~~~~lke~D~l~~~~~~~t~d-----~ll~fT~~Gr~~~~~~~elp~~~r~a~G~ 80 (323)
T 1wp5_A 8 IVTVTKDGYVKRTSLRSYAASNG--QDFAMKDTDRLLAMLEMNTKD-----VLLLFTNKGNYLYCPVHELPDIRWKDLGQ 80 (323)
T ss_dssp EEEEETTCEEEEEEHHHHHHTTT--CCCCCCTTCCEEEEEEEETTS-----EEEEEETTSEEEEEEGGGSCBCCTTSCCE
T ss_pred EEEEeCCCEEEEeEHHHhhhcCc--cccccCCCCEEEEEEEECCCC-----EEEEEECCCEEEEEEHHHCcCCCCCCCCc
Confidence 6788999999988766331 111 111343333333322222222 46777778885554 433221100000
Q ss_pred -ccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEec
Q 019405 93 -NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD 171 (341)
Q Consensus 93 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~ 171 (341)
...... -..++.++.+...+... .+..++.++..|.++-..+..-..... ..-+.......+..+..+...
T Consensus 81 ~i~~~i~-L~~~e~Iv~~~~~~~~~-----~~~~ll~~T~~G~iKrt~l~e~~~~~r--~~G~~ai~l~e~d~lv~~~~~ 152 (323)
T 1wp5_A 81 HIANIIP-IDRDEEIIKAIPINDFE-----LNGYFLFVTRNGMVKKTELKHYKAQRY--SKPLTGINLKNDDQVVDVHLT 152 (323)
T ss_dssp EGGGTSC-CCTTCCEEEEEEESCTT-----SSCEEEEEETTSEEEEEEGGGGCCSCC--SSCEECSCCCTTCCEEEEEEE
T ss_pred ChhhccC-CCCCCEEEEEEEecccC-----CCceEEEEeCCCeEEEeEHHHhhhccc--cCceEEEEeCCCCEEEEEEEe
Confidence 000000 12345676665554311 012688999999999888754332110 122333444444555555554
Q ss_pred CCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCC---
Q 019405 172 ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR--- 248 (341)
Q Consensus 172 ~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--- 248 (341)
.....++..+.+|.+..++...-..... .......+.+.....|.++... .++...+++.+..|..+..++....
T Consensus 153 ~~~~~i~l~T~~G~~irf~~~ev~~~gR-~a~GV~~i~L~~~d~Vv~~~~~-~~~~~~ll~vt~~G~gKr~~~~e~~~~~ 230 (323)
T 1wp5_A 153 DGMNELFLVTHNGYALWFDESEVSIVGV-RAAGVKGMNLKEGDYIVSGQLI-TSKDESIVVATQRGAVKKMKLTEFEKAT 230 (323)
T ss_dssp CSCSEEEEEETTSEEEEEEGGGSCBCCS-SCCCEECCCCCTTCCEEEEEEE-CCTTCEEEEEETTSEEEEEEGGGSCCCC
T ss_pred CCCCEEEEEeCCCcEEEEEHHHCcccCC-CCcCEEEEEeCCCCEEEEEEEE-cCCCcEEEEEECCCceEEEEHHHccccC
Confidence 4556777888899988888753221111 0111111112222446666553 3333268888889998888775421
Q ss_pred ---ceeEEEE---ecCCCeEEEEEcCCCceEEEEeCCCCEEEEECC
Q 019405 249 ---RPVMSFD---FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR 288 (341)
Q Consensus 249 ---~~~~~~~---~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~ 288 (341)
.-+..++ .....+..+....++..++..+..|.+.-+.+.
T Consensus 231 Rg~kGv~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~ 276 (323)
T 1wp5_A 231 RAKRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVG 276 (323)
T ss_dssp TTSCCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGG
T ss_pred CCCCCEECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhh
Confidence 1112221 112244433222233345556666766655554
No 343
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=92.52 E-value=5.3 Score=35.26 Aligned_cols=72 Identities=13% Similarity=-0.015 Sum_probs=52.1
Q ss_pred CeEEEEEcCCCceEEEEe-CCCCEEEEECCCC------eE-------EeEEeccccCceeEEEecCCCCEEEEEeCCCcE
Q 019405 260 PIKAVAEEPDSFNIYIGN-GSGDLASVDIRTG------KL-------LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYL 325 (341)
Q Consensus 260 ~v~~~~~~~~~~~l~~g~-~dg~i~iwd~~~~------~~-------~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v 325 (341)
....+..+|||+++++++ .+.++.++|++.. +. ....+. .-.-...+|.++|....|.-.|..|
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~--GlGPlHt~Fd~~G~aYTtlfidSqv 401 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL--GLGPLHTTFDGRGNAYTTLFIDSQV 401 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC--CSCEEEEEECSSSEEEEEETTTTEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC--CCcccEEEECCCCceEeeeeecceE
Confidence 345788999999988766 5789999998731 11 222222 3355778999999666666789999
Q ss_pred EEEEcCCC
Q 019405 326 RFWDIKTR 333 (341)
Q Consensus 326 ~iwd~~~~ 333 (341)
.-|++...
T Consensus 402 vkWni~~a 409 (638)
T 3sbq_A 402 VKWNMEEA 409 (638)
T ss_dssp EEEEHHHH
T ss_pred EEEeccHH
Confidence 99998753
No 344
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=91.58 E-value=4.7 Score=32.67 Aligned_cols=210 Identities=12% Similarity=0.110 Sum_probs=108.2
Q ss_pred CceEEEEccCCeEEEeeCCCCcchhee-eccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeec
Q 019405 65 DPLLAVARKNGLTDILNPLNGDLRVAI-SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT 143 (341)
Q Consensus 65 ~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~ 143 (341)
.+++++.+.+|.|+--.+.+-+....- .+.... ....++.+..+...+... .++..+..|.+.-.....-
T Consensus 8 e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~-~lke~D~l~~~~~~~~~~--------~ll~~T~~G~~~~~~~~~i 78 (312)
T 1suu_A 8 ENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSF-DLNDGDEIVIALCVNTHD--------YLFMISNEGKLYLINAYEI 78 (312)
T ss_dssp CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECC-CCCTTCCEEEEEEEETTC--------EEEEEETTSEEEEEEGGGS
T ss_pred CCEEEEEeCCCEEEEeEHHHhhccccCCCCceec-ccCCCCEEEEEEEECCCC--------EEEEEECCCeEEEEEHHHC
Confidence 457888999999998766433221110 000000 012346666666555555 7777788888766655332
Q ss_pred ccccccCCce--EEEEEeecCCceEEEEecC---CCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeE
Q 019405 144 KVSAESSCST--VKSWNVCASGTIAFSKVDI---SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTS 218 (341)
Q Consensus 144 ~~~~~~~~~~--v~~~~~~~~~~i~~~~~~~---~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 218 (341)
+.......|. ........+..|..+..-+ +..+++..+..|.++.-.+..-.... ......+.+.....+-.
T Consensus 79 p~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r---~~G~~~i~L~~~d~lv~ 155 (312)
T 1suu_A 79 KDSSRASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVK---SRGVIVIKLNDKDFVTS 155 (312)
T ss_dssp CC-------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC-------CEECBCCCTTCCEEE
T ss_pred CCCCccCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccC---CCcEEEEecCCCCEEEE
Confidence 2110000000 0011222334444443322 45678888999999988774321110 00000011111233555
Q ss_pred EEEEecCCCCEEEEEeCCCeEEEEEcCCC----C--ceeEEEEe-cCCCeEEEEEcCCCceEEEEeCCCCEEEEECC
Q 019405 219 AAFLSIDDHRKFVAGTNDHQVRLYDTSAQ----R--RPVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIR 288 (341)
Q Consensus 219 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~----~--~~~~~~~~-~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~ 288 (341)
+.. ..+...++..+.+|.+..+....- . .-++.+.. ....|..+..-+++..+++.+..|..+..++.
T Consensus 156 ~~~--~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~ 230 (312)
T 1suu_A 156 AEI--VFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMS 230 (312)
T ss_dssp EEE--ECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGG
T ss_pred EEE--eCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHH
Confidence 544 234557788889999999887541 1 11222221 23456666554555678888889998888874
No 345
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=91.52 E-value=8.2 Score=35.33 Aligned_cols=150 Identities=13% Similarity=0.139 Sum_probs=80.0
Q ss_pred CCCEEEEeeCC------CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCC--eEEEEEc
Q 019405 173 SEKFSLFGGKG------VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH--QVRLYDT 244 (341)
Q Consensus 173 ~~~~l~~~~~d------~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~--~i~iwd~ 244 (341)
++++++.||.+ +.+.+||..+.+-... ..... +..-.+++. -.++.+++.|+.++ .+.+||.
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~-~~~p~-------~R~~h~~~~--~~~~~iyv~GG~~~~~~v~~yd~ 520 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMI-KSLSH-------TRFRHSACS--LPDGNVLILGGVTEGPAMLLYNV 520 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEEC-CCCSB-------CCBSCEEEE--CTTSCEEEECCBCSSCSEEEEET
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEEC-CCCCC-------CcccceEEE--EcCCEEEEECCCCCCCCEEEEEC
Confidence 66777777753 3578889877532221 11110 011122222 23777888887654 6889998
Q ss_pred CCCCceeEEEEe------cCCCeEEEEEcCC-CceEEEEeC--C-----CCEEEEECCCCe------EEeEEec-cccCc
Q 019405 245 SAQRRPVMSFDF------RETPIKAVAEEPD-SFNIYIGNG--S-----GDLASVDIRTGK------LLGCFIG-KCSGS 303 (341)
Q Consensus 245 ~~~~~~~~~~~~------~~~~v~~~~~~~~-~~~l~~g~~--d-----g~i~iwd~~~~~------~~~~~~~-~~~~~ 303 (341)
.+.. -..+.. ......++.+..+ +++++.|+. + +.+.+||+.+.+ ....... .....
T Consensus 521 ~t~~--W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~ 598 (695)
T 2zwa_A 521 TEEI--FKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRY 598 (695)
T ss_dssp TTTE--EEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCB
T ss_pred CCCc--eEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcc
Confidence 8743 222211 1112233555555 667777765 2 358999998776 2211111 10111
Q ss_pred eeEEEecCCCCEEEEEeCC--------CcEEEEEcCCCc
Q 019405 304 IRSIARHPTLPIIASCGLD--------SYLRFWDIKTRQ 334 (341)
Q Consensus 304 i~~~~~~~~~~~l~s~~~d--------g~v~iwd~~~~~ 334 (341)
-.+++...++.+++.|+.+ ..|.+||+.+.+
T Consensus 599 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~ 637 (695)
T 2zwa_A 599 GSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSET 637 (695)
T ss_dssp SCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred cceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCe
Confidence 1223333337777777743 468999998764
No 346
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=91.03 E-value=5.5 Score=32.49 Aligned_cols=251 Identities=9% Similarity=0.030 Sum_probs=126.9
Q ss_pred ceEEEEccCCeEEEeeCCCCcchhee-eccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecc
Q 019405 66 PLLAVARKNGLTDILNPLNGDLRVAI-SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK 144 (341)
Q Consensus 66 ~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~ 144 (341)
+.+++-+.+|.|+--.+.+.+....- .+.... ....++.+..+...+... .++.-+..|.+.-..+..-+
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~-~~ke~D~~~~~~~~~t~d--------~ll~fT~~Gr~y~~~~~~lp 74 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGA-GLKQDDIVAHFFVCSTHD--------LILFFTTQGRVYRAKAYDLP 74 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC--------C-CCCGGGCEEEEEEEETTS--------EEEEEETTSEEEEEEGGGSC
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCcccc-ccCCCCEEEEEEEeCCCC--------EEEEEeCCCeEEEEEHHHCc
Confidence 46888889999997654321110000 000000 001235555555555444 56666666766544433222
Q ss_pred cccccCCce--EEEEEeecCCceEEEE-ecC--CCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEE
Q 019405 145 VSAESSCST--VKSWNVCASGTIAFSK-VDI--SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSA 219 (341)
Q Consensus 145 ~~~~~~~~~--v~~~~~~~~~~i~~~~-~~~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 219 (341)
.......|. ..+..+..+..|..+. +.+ +..+++..+.+|.++--.+..-..... .....+.+.....+..+
T Consensus 75 ~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r---~G~~~i~lke~D~lv~~ 151 (327)
T 3uc1_A 75 EASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRS---GGIVAVNLRDNDELVGA 151 (327)
T ss_dssp BCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCS---SCEESCBCCTTCCEEEE
T ss_pred CCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhcccc---CceEEEEECCCCEEEEE
Confidence 211111111 0112233344555443 332 578899999999999887654221110 00001111112335444
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEEcC--CCC---c-----eeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCC
Q 019405 220 AFLSIDDHRKFVAGTNDHQVRLYDTS--AQR---R-----PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT 289 (341)
Q Consensus 220 ~~~~~~~~~~l~~~~~d~~i~iwd~~--~~~---~-----~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~ 289 (341)
.. ......|+..+..|.+..+... .-. + ....+. ....|.++...+++..++..+..|.++.-.+..
T Consensus 152 ~~--~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e 228 (327)
T 3uc1_A 152 VL--CSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEE 228 (327)
T ss_dssp EE--ECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred EE--ecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHH
Confidence 44 3345677778889998888776 311 0 011122 234577766656666888889999988887542
Q ss_pred C---------eEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405 290 G---------KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (341)
Q Consensus 290 ~---------~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 332 (341)
. .....+... .+.+..+....+...++..+.+|.+.-++...
T Consensus 229 ~~~~~R~~~G~~~~~l~~~-~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 229 YPVQGRGGKGVLTVMYDRR-RGRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp SCBCCTTSCCEESSCCCTT-TCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred ccccCcCCCcEEEEEecCC-CCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 2 111222221 23455554444445666667777777776543
No 347
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=90.50 E-value=11 Score=34.87 Aligned_cols=153 Identities=16% Similarity=0.155 Sum_probs=86.3
Q ss_pred ceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEE
Q 019405 164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD 243 (341)
Q Consensus 164 ~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd 243 (341)
.|.++.. .++ .|..++.+ .|..||..+++... +.... . .. ....|.++.. ..++.+. .++.+ -+..++
T Consensus 104 ~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~-~~~~~-~--~l-~~~~i~~i~~--d~~g~lW-igt~~-Gl~~~~ 171 (758)
T 3ott_A 104 DVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTS-FDTRR-N--GL-PNNTIYSIIR--TKDNQIY-VGTYN-GLCRYI 171 (758)
T ss_dssp CEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEE-ECHHH-H--CC-SCSCEEEEEE--CTTCCEE-EEETT-EEEEEE
T ss_pred eEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEE-eccCC-C--Cc-CCCeEEEEEE--cCCCCEE-EEeCC-CHhhCc
Confidence 4555544 344 45555655 68889987654332 21000 0 00 0134777766 5566544 45554 577888
Q ss_pred cCCCCceeEEEEec------CCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEE
Q 019405 244 TSAQRRPVMSFDFR------ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIA 317 (341)
Q Consensus 244 ~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 317 (341)
..+.+ ...+... ...|.++...+++..|..|+. +-+..+|..+++........ ...|.++...++|.+.+
T Consensus 172 ~~~~~--~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~-~~~i~~i~~d~~g~lWi 247 (758)
T 3ott_A 172 PSNGK--FEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFH-NNSIKSLALDGNGDLLA 247 (758)
T ss_dssp TTTTE--EEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEE-EEEEEEEEECTTCCEEE
T ss_pred cCCCc--eEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCC-CCeEEEEEEcCCCCEEE
Confidence 76533 2222211 124788888777665555554 45888998877543221112 45688888888887665
Q ss_pred EEeCCCcEEEEEcCCCc
Q 019405 318 SCGLDSYLRFWDIKTRQ 334 (341)
Q Consensus 318 s~~~dg~v~iwd~~~~~ 334 (341)
.. .+ -+.+++..+++
T Consensus 248 gT-~~-Gl~~~~~~~~~ 262 (758)
T 3ott_A 248 GT-DN-GLYVYHNDTTP 262 (758)
T ss_dssp EE-TT-EEEEECCTTSC
T ss_pred Ee-CC-ceeEEecCCCc
Confidence 44 44 57788876654
No 348
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=90.31 E-value=6.6 Score=32.19 Aligned_cols=58 Identities=7% Similarity=-0.027 Sum_probs=27.6
Q ss_pred eEEEEEcCCCCc-eeEEEEecCCCeEEEEEcCCCceEEEEeCCC------CEEEEECCCCeEEeEEe
Q 019405 238 QVRLYDTSAQRR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGSG------DLASVDIRTGKLLGCFI 297 (341)
Q Consensus 238 ~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg------~i~iwd~~~~~~~~~~~ 297 (341)
.+.+||+.+.+= .+..+......-.++ ..++++++.|+.++ .|.++++++++.+....
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~ 350 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRAYGVSL--PWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNL 350 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCBSSEEE--EETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred eEEEEecCCCceeeCCCCCCCcccceeE--EeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence 477889876431 121111111111222 23677788888653 36666888776654433
No 349
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=89.92 E-value=3.2 Score=39.58 Aligned_cols=38 Identities=24% Similarity=0.316 Sum_probs=33.5
Q ss_pred CceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 302 GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 302 ~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
..+.+++..++..++++-+.|+++|+|++.+++++.+.
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 35777888888899999999999999999999998764
No 350
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=89.51 E-value=7.6 Score=31.68 Aligned_cols=282 Identities=10% Similarity=0.047 Sum_probs=133.8
Q ss_pred eeeeecCCCCeEEEEEecCc------cCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEE---eeCCCC-
Q 019405 16 RALTFDSLGLIKVIEARGEH------GGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDI---LNPLNG- 85 (341)
Q Consensus 16 ~~~~~~~~g~i~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~i---w~~~~~- 85 (341)
-.++.+.+|.||...+..-. .|.. ...+.+.+.-......+... .|+.-+..|.++- |++...
T Consensus 5 v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~--~~~~ke~D~~~~~~~~~t~d-----~ll~fT~~Gr~y~~~~~~lp~~~ 77 (327)
T 3uc1_A 5 VVVTITETGYAKRTKTDLYRSQKRGGKGVQ--GAGLKQDDIVAHFFVCSTHD-----LILFFTTQGRVYRAKAYDLPEAS 77 (327)
T ss_dssp EEEEEETTSEEEEEEHHHHHHHC----------CCCCGGGCEEEEEEEETTS-----EEEEEETTSEEEEEEGGGSCBCC
T ss_pred EEEEEeCCCEEEEeeHHHhhhcccCCCCcc--ccccCCCCEEEEEEEeCCCC-----EEEEEeCCCeEEEEEHHHCcCCC
Confidence 36788899999987654310 1211 11333322222222222222 3555555776544 444432
Q ss_pred -----cchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEee
Q 019405 86 -----DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC 160 (341)
Q Consensus 86 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~ 160 (341)
..+..+-.. ..+..++.+...+... ....++..+.+|.++-..+....... . .-+......
T Consensus 78 r~~~G~~i~~~l~l------~~~e~i~~~~~~~~~~-----~e~~~v~~T~~G~iKr~~l~~~~~~~--r-~G~~~i~lk 143 (327)
T 3uc1_A 78 RTARGQHVANLLAF------QPEERIAQVIQIRGYT-----DAPYLVLATRNGLVKKSKLTDFDSNR--S-GGIVAVNLR 143 (327)
T ss_dssp SSSCCEEHHHHTTC------CTTCCEEEEEEESSTT-----SSSEEEEEETTSEEEEEEGGGGCCCC--S-SCEESCBCC
T ss_pred ccCCCEEHHHccCC------CCCCEEEEEEEeccCC-----CCCEEEEEcCCCEEEEeEHHHhhccc--c-CceEEEEEC
Confidence 111111111 2346677766655311 01289999999999988765433111 1 122333333
Q ss_pred cCCceEEEEecCCCCEEEEeeCCCeEEEEECC--CCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCe
Q 019405 161 ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLD--KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ 238 (341)
Q Consensus 161 ~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~ 238 (341)
.+..+..+........++..+..|.+..+... .-.....- ......+.+.....|.++.. -+++..++..+..|.
T Consensus 144 e~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~-a~Gv~~i~L~~~d~Vv~~~~--~~~~~~ll~~T~~G~ 220 (327)
T 3uc1_A 144 DNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRA-TSGVQGMRFNIDDRLLSLNV--VREGTYLLVATSGGY 220 (327)
T ss_dssp TTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTT-SBCEESSCCCTTCCEEEEEE--CCTTCEEEEEETTSE
T ss_pred CCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcC-CCCeeeecCCCCCEEEEEEE--ECCCCEEEEEeCCCc
Confidence 44455555544455677778888998888776 32111000 00000111222344666655 345568888899999
Q ss_pred EEEEEcCCCC------ceeEEEEe--cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCC---------eEEeEEecccc
Q 019405 239 VRLYDTSAQR------RPVMSFDF--RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG---------KLLGCFIGKCS 301 (341)
Q Consensus 239 i~iwd~~~~~------~~~~~~~~--~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~---------~~~~~~~~~~~ 301 (341)
++.-.+.... .-+..+.. ....+..+....+...++..+.+|.+.-++...- -....+.. .
T Consensus 221 ~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i~~~gR~a~GV~~i~l~~--~ 298 (327)
T 3uc1_A 221 AKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGE--G 298 (327)
T ss_dssp EEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGGSCBCCTTSCCEECTTCCT--T
T ss_pred EEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhhccccCCCCCCeEeEecCC--C
Confidence 9988765422 11222221 1334555444444456666677777777765421 11112221 3
Q ss_pred CceeEEEecCC-CCEEEEEeCCC
Q 019405 302 GSIRSIARHPT-LPIIASCGLDS 323 (341)
Q Consensus 302 ~~i~~~~~~~~-~~~l~s~~~dg 323 (341)
..|.++...+. ...+++.+.+|
T Consensus 299 d~vv~~~~~~~~~~~~~~~~~~g 321 (327)
T 3uc1_A 299 DTLLAIARNAEESGDDNAVDANG 321 (327)
T ss_dssp CCEEEEEECC-------------
T ss_pred CEEEEEEEcCCCcceEEEEecCC
Confidence 45666655443 34455555554
No 351
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=89.14 E-value=7.7 Score=31.29 Aligned_cols=255 Identities=10% Similarity=0.052 Sum_probs=118.1
Q ss_pred eeeecCCCCeEEEEEecCc----cCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEee---CCCCcchh
Q 019405 17 ALTFDSLGLIKVIEARGEH----GGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILN---PLNGDLRV 89 (341)
Q Consensus 17 ~~~~~~~g~i~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~---~~~~~~~~ 89 (341)
++..+.+|.||...+..-. .+.-.....+.+.+.-+.....+... .|+..+..|.+.-.. +.......
T Consensus 6 ~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~~~-----~ll~fT~~G~~~~~~~~elp~~~~~a 80 (307)
T 1zi0_A 6 VVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHD-----HILCFSSRGRVYSMKVYQLPEATRGA 80 (307)
T ss_dssp EEEEETTSEEEEEECC--------------------CCEEEEEEEETTC-----EEEEEETTSEEEEEEGGGSCCCCSSS
T ss_pred EEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECCCC-----EEEEEECCCEEEEEEhhHCcCCCCCC
Confidence 6788999999887765420 00001111333333333322222222 477777788855544 33221100
Q ss_pred e-eeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEE
Q 019405 90 A-ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS 168 (341)
Q Consensus 90 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~ 168 (341)
. ........ -..++.++.+....... .+..++..+..|.++-..+..-.... . .-+.......+..+..+
T Consensus 81 ~G~~i~~~l~-l~~~e~i~~~~~~~~~~-----~~~~ll~~T~~G~~Krt~l~e~~~~~--r-~G~~~i~l~~~d~lv~~ 151 (307)
T 1zi0_A 81 RGRPIVNLLP-LEQDERITAILPVTEFE-----EGVKVFMATANGTVKKTVLTEFNRLR--T-AGKVAIKLVDGDELIGV 151 (307)
T ss_dssp CCEEGGGTSC-CCTTCCEEEEEEESCCC-----TTCEEEEEETTSEEEEEEGGGGTTCC--T-TCEESSCCCTTCCEEEE
T ss_pred CCeEhhhccC-CCCCCEEEEEEEeccCC-----CCcEEEEEeCCCeEEEEEHHHhhccc--c-CCeEEEEECCCCEEEEE
Confidence 0 00000000 12345676665543111 01168899999999988775332211 1 12233333334455554
Q ss_pred EecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCC
Q 019405 169 KVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR 248 (341)
Q Consensus 169 ~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 248 (341)
....+...++..+.+|.+..++...-..... .......+.+.....|.++.. -.++..+++.+..|.++-.++....
T Consensus 152 ~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr-~a~Gv~~i~L~~~d~Vv~~~~--~~~~~~ll~~T~~G~~Kr~~~~e~~ 228 (307)
T 1zi0_A 152 DLTSGEDEVMLFSAEGKVVRFKESSVRAMGC-NTTGVRGIRLGEGDKVVSLIV--PRGDGAILTATQNGYGKRTAVAEYP 228 (307)
T ss_dssp EEECTTCEEEEEETTSEEEEEEGGGSCBCCT-TCCCEECCCCCTTCCEEEEEC--CCSSCEEEEEETTSEEEEECGGGSC
T ss_pred EEeCCCCEEEEECCCCcEEEEEHHHcCccCC-CCCCeEeEEeCCCCEEEEEEE--ecCCCEEEEEEcCCceEEEEHHHhc
Confidence 4444455677788888888887653211100 000001111222244655554 3345578888999999988774321
Q ss_pred ---c---eeE--EEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECC
Q 019405 249 ---R---PVM--SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR 288 (341)
Q Consensus 249 ---~---~~~--~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~ 288 (341)
+ -+. .+....+.+..+....+...++..+.+|.+.-+++.
T Consensus 229 ~~~Rg~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~ 276 (307)
T 1zi0_A 229 TKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVS 276 (307)
T ss_dssp CCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGG
T ss_pred cCCCCCCCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEecc
Confidence 1 011 122222444444332333445555666666555554
No 352
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=88.90 E-value=6.5 Score=34.70 Aligned_cols=102 Identities=4% Similarity=-0.135 Sum_probs=63.8
Q ss_pred eeeeEEEEEecCCCCEEEEEe-CCCeEEEEEcCCCC-----------ce-eEEEEecCCCeEEEEEcCCCceEEEEeCCC
Q 019405 214 TWFTSAAFLSIDDHRKFVAGT-NDHQVRLYDTSAQR-----------RP-VMSFDFRETPIKAVAEEPDSFNIYIGNGSG 280 (341)
Q Consensus 214 ~~v~~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~-----------~~-~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg 280 (341)
.....+.. +|+|++++.++ .+.++.++|++... .. +..... ...-.-.+|.++|....+-.-|.
T Consensus 323 ksPHGv~v--sPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~-GlGPlHt~Fd~~G~aYTtlfidS 399 (638)
T 3sbq_A 323 KNPHGCNT--SSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL-GLGPLHTTFDGRGNAYTTLFIDS 399 (638)
T ss_dssp SSCCCEEE--CTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC-CSCEEEEEECSSSEEEEEETTTT
T ss_pred CCCcceee--CCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC-CCcccEEEECCCCceEeeeeecc
Confidence 33455666 89999988765 47889999988421 10 111121 22345688999995555666899
Q ss_pred CEEEEECCCC----------eEEeEEeccccCceeEEEe------cCCCCEEEEEe
Q 019405 281 DLASVDIRTG----------KLLGCFIGKCSGSIRSIAR------HPTLPIIASCG 320 (341)
Q Consensus 281 ~i~iwd~~~~----------~~~~~~~~~~~~~i~~~~~------~~~~~~l~s~~ 320 (341)
.|.-|++... ..+.++..| -. +-.+.- .|+|++|++..
T Consensus 400 qvvkWni~~a~~~~~g~~~~~v~~k~dv~-Yq-pGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 400 QVVKWNMEEAVRAYKGEKVNYIKQKLDVH-YQ-PGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EEEEEEHHHHHHHHTTCCCCCEEEEEECS-SC-EEEEEETTTTSTTCCSCEEEEEE
T ss_pred eEEEEeccHHHHHhcCccCCeeeeccccc-cC-CcccccCCCccCCCCccEEEEec
Confidence 9999998753 355566554 22 222222 46777777764
No 353
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=87.70 E-value=2.3 Score=37.93 Aligned_cols=58 Identities=12% Similarity=0.192 Sum_probs=44.6
Q ss_pred EEEEEcCCCceEEEEeCC------------CCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEE
Q 019405 262 KAVAEEPDSFNIYIGNGS------------GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASC 319 (341)
Q Consensus 262 ~~~~~~~~~~~l~~g~~d------------g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 319 (341)
-.|+|+|.|.+++.-..+ +.+.+.+..+++....+.++....++.++|+||++.|+..
T Consensus 479 DNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 479 DGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred cceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 468999999877664432 2366667778888777777767899999999999977655
No 354
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=87.58 E-value=13 Score=32.04 Aligned_cols=106 Identities=9% Similarity=0.057 Sum_probs=59.9
Q ss_pred eeEEEEEecCCCC-EEEEEeCCCeEEEEEcCCCC--ceeEEEE---------ecCCCeEEEEEcCC---CceEEEE-eC-
Q 019405 216 FTSAAFLSIDDHR-KFVAGTNDHQVRLYDTSAQR--RPVMSFD---------FRETPIKAVAEEPD---SFNIYIG-NG- 278 (341)
Q Consensus 216 v~~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~--~~~~~~~---------~~~~~v~~~~~~~~---~~~l~~g-~~- 278 (341)
...++| .|++. .|+++...|.|++++..... .++..+. ..+.....|+|+|+ ..+|++. +.
T Consensus 16 P~~~a~--~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 16 PVGALH--SGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp EEEEEC--CSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred ceEEEE--CCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 567888 77885 45666789999999754321 1222221 01356788999996 2234333 21
Q ss_pred -C----------CCEEEEECCC----------CeEEeEEe-ccccCceeEEEecCCCCEEEEEeCCC
Q 019405 279 -S----------GDLASVDIRT----------GKLLGCFI-GKCSGSIRSIARHPTLPIIASCGLDS 323 (341)
Q Consensus 279 -d----------g~i~iwd~~~----------~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~~dg 323 (341)
+ ..|.-|.+.. .+.+..+. ......-..|+|.|||.+.++.+..+
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence 1 1344455432 23344433 11123467899999999777766543
No 355
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=87.36 E-value=11 Score=31.00 Aligned_cols=249 Identities=14% Similarity=0.103 Sum_probs=115.4
Q ss_pred ceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeec---cccccccccceeEE
Q 019405 52 NCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKR---QREESSSRSRTLLT 128 (341)
Q Consensus 52 ~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~ 128 (341)
-..++|.+++. ++++-...|.|++++..+++.. .+... +..+.........+++.+. +. .|..
T Consensus 34 P~~ia~~pdG~----llVter~~G~I~~v~~~~g~~~-~v~~~-~~v~~~g~~GllGia~~Pdf~~~g--------~lYv 99 (347)
T 3das_A 34 PWGLAPLPGGD----LLVSSRDEATITRVDAKTGRKT-ELGEV-PGVSPSGEGGLLGIALSPDYASDH--------MVYA 99 (347)
T ss_dssp EEEEEECTTSC----EEEEETTTCEEEEECTTTCCEE-EEEEC-TTCCCBTTBSEEEEEECTTHHHHC--------EEEE
T ss_pred ceEEEEcCCCc----EEEEEecCCEEEEEECCCCcEe-eeccc-CceeecCCCCceeeEeccccccCC--------EEEE
Confidence 34677777765 5555544899999987655432 22211 1111123455667776543 22 3333
Q ss_pred E-c--ccceeEEEEeeecccccccCCceEEEEE-ee--cCCceEEEEecCCCCEEEEeeC-------------CCeEEEE
Q 019405 129 C-T--TKGKASMRSIEVTKVSAESSCSTVKSWN-VC--ASGTIAFSKVDISEKFSLFGGK-------------GVEVNVW 189 (341)
Q Consensus 129 ~-~--~~g~~~i~~~~~~~~~~~~~~~~v~~~~-~~--~~~~i~~~~~~~~~~~l~~~~~-------------d~~v~i~ 189 (341)
. + .++.+.-+.+.............-.++. .. ....-..|.|.|||.+.++.+. .|.|.-.
T Consensus 100 ~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi 179 (347)
T 3das_A 100 YFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRM 179 (347)
T ss_dssp EEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEE
T ss_pred EEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEE
Confidence 2 2 2333333333221100000011122222 11 1123456899999987777543 2344444
Q ss_pred ECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEe-CCCeEEEEEcCCC-----------------Ccee
Q 019405 190 DLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-NDHQVRLYDTSAQ-----------------RRPV 251 (341)
Q Consensus 190 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~-----------------~~~~ 251 (341)
+... +.-..-.......+...+.+ ...++| +|++.+.++-. .|+.=.|--+..+ ..|+
T Consensus 180 ~~dG-~ip~~nPf~~~~i~a~G~RN-p~Gla~--dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~ 255 (347)
T 3das_A 180 TPDG-EPAPGNPFPGSPVYSYGHRN-VQGLAW--DDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPV 255 (347)
T ss_dssp CTTS-SBCTTCSSTTCCEEEBCCSB-CCEEEE--CTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCS
T ss_pred eCCC-CccCCCCCCCCeEEeeCCCC-cceEEE--CCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCc
Confidence 4331 10000000000111111222 457788 77776655432 2221122212221 1234
Q ss_pred EEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeE----EeEEeccccCceeEEEecCCCCEEEEEe
Q 019405 252 MSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL----LGCFIGKCSGSIRSIARHPTLPIIASCG 320 (341)
Q Consensus 252 ~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 320 (341)
..+..+......++|. ++.++...-..+.|....+..... ...+.+. ...+..++..|||.++++.+
T Consensus 256 ~~~~~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~-~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 256 AQWSTDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGE-YGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp EEECTTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTT-SSCEEEEEEEETTEEEEEEC
T ss_pred EecCCCCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCC-CCCccEEEECCCCcEEEEEc
Confidence 4443332355677776 455666656666777777665432 2223332 46899999999998666543
No 356
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=86.49 E-value=11 Score=29.92 Aligned_cols=206 Identities=9% Similarity=-0.018 Sum_probs=116.3
Q ss_pred CCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecC-CCCEEEEee
Q 019405 103 DDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGG 181 (341)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~-~~~~l~~~~ 181 (341)
++.+..+...+... .++.-+..|.+.-..+..-+... ..+ . +..+..|..+.... +..+++..+
T Consensus 23 gD~~~~~~~~~t~~--------~ll~fT~~G~v~~~~~~~lp~~~--~~~----l-l~~~e~i~~v~~~~~~~~~~v~~T 87 (276)
T 3no0_A 23 KAPVVNILRVPFTE--------GLFLVSNRGRVYWIAGSQALQGS--KVS----L-KSREEKIVGAFIREKFGNRLLLAT 87 (276)
T ss_dssp CCCEEEEEEEETTS--------CEEEEETTSEEEEECSHHHHTSE--ECC----C-SSTTCCEEEEEEGGGSCSEEEEEE
T ss_pred CCeEEEEEEECCCC--------EEEEEcCCCeEEEEEhhhCccCc--ccc----c-CCCCCEEEEEECCcCCCCEEEEEe
Confidence 36676666666555 67777777777654433222221 111 2 44556666664422 467899999
Q ss_pred CCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCC------c--eeEE
Q 019405 182 KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR------R--PVMS 253 (341)
Q Consensus 182 ~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~------~--~~~~ 253 (341)
.+|.++-..+..-. .. ......+.+.....+..+.. ......++..+.+|.+..+....-. . +...
T Consensus 88 ~~G~iKr~~l~~~~-~~---~~G~~~i~lkegD~l~~~~~--~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~ 161 (276)
T 3no0_A 88 KKGYVKKIPLAEFE-YK---AQGMPIIKLTEGDEVVSIAS--SVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIK 161 (276)
T ss_dssp TTSEEEEEEGGGTT-TC---STTEECSCCCTTCCEEEEEE--CCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCC
T ss_pred CCCEEEEEEHHHhh-hh---cCCeEEEecCCCCEEEEEEE--eCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEc
Confidence 99999998875432 11 00111111212234555555 3455678888899998888754311 0 1111
Q ss_pred EEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCC-------CeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEE
Q 019405 254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT-------GKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLR 326 (341)
Q Consensus 254 ~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~ 326 (341)
+. ....|..+...+++..++..+..|.++...+.. ++-+..+. . .+.+..+....+...++..+.+|.+.
T Consensus 162 L~-~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~-~-~~~lv~~~~~~~~~~i~~~t~~G~~i 238 (276)
T 3no0_A 162 LE-KNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVSG-T-KDTLVDLIPIKEEVELLITTKNGKAF 238 (276)
T ss_dssp CC-TTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECCC-S-SSCEEEEEEESSEEEEEEEETTSCEE
T ss_pred cC-CCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEEc-C-CCcEEEEEEeCCCCEEEEEcCCCeEE
Confidence 22 234566665555566888889999998887642 22222232 2 34555554433444666677788877
Q ss_pred E--EEcCC
Q 019405 327 F--WDIKT 332 (341)
Q Consensus 327 i--wd~~~ 332 (341)
. +++..
T Consensus 239 r~~~~~~~ 246 (276)
T 3no0_A 239 YDKINQKD 246 (276)
T ss_dssp EEEEEGGG
T ss_pred EeeeCHHH
Confidence 7 77654
No 357
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=86.30 E-value=3.2 Score=40.51 Aligned_cols=38 Identities=24% Similarity=0.316 Sum_probs=32.8
Q ss_pred CceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 302 GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 302 ~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
..+.+++..++..++++-+.|+++|+|++.+++++.+.
T Consensus 238 ~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp TCBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred ceeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 35666777788899999999999999999999998863
No 358
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=85.69 E-value=13 Score=30.21 Aligned_cols=251 Identities=11% Similarity=0.076 Sum_probs=126.1
Q ss_pred CCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeec
Q 019405 64 NDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT 143 (341)
Q Consensus 64 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~ 143 (341)
+.+++++.+.+|.|+--.+.+-+.... ... ....++.+..+...+... .++..+..|.+.-..+..-
T Consensus 4 ~e~~~v~lT~~G~IKr~~~~~~~~~~~----~~~-~lke~D~l~~~~~~~t~d--------~ll~fT~~Gr~~~~~~~el 70 (323)
T 1wp5_A 4 SEDVIVTVTKDGYVKRTSLRSYAASNG----QDF-AMKDTDRLLAMLEMNTKD--------VLLLFTNKGNYLYCPVHEL 70 (323)
T ss_dssp CCEEEEEEETTCEEEEEEHHHHHHTTT----CCC-CCCTTCCEEEEEEEETTS--------EEEEEETTSEEEEEEGGGS
T ss_pred CCcEEEEEeCCCEEEEeEHHHhhhcCc----ccc-ccCCCCEEEEEEEECCCC--------EEEEEECCCEEEEEEHHHC
Confidence 345788899999999765432111000 000 112446676666655555 7777777787665554332
Q ss_pred ccccccCCce--EEEEEeecCCceEEE-EecC--CCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeE
Q 019405 144 KVSAESSCST--VKSWNVCASGTIAFS-KVDI--SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTS 218 (341)
Q Consensus 144 ~~~~~~~~~~--v~~~~~~~~~~i~~~-~~~~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 218 (341)
+.......|. ....++..+..|..+ .+.+ ++.+++..+.+|.++--.+..-..... ......+.+.....+-.
T Consensus 71 p~~~r~a~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r--~~G~~ai~l~e~d~lv~ 148 (323)
T 1wp5_A 71 PDIRWKDLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRY--SKPLTGINLKNDDQVVD 148 (323)
T ss_dssp CBCCTTSCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCC--SSCEECSCCCTTCCEEE
T ss_pred cCCCCCCCCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccc--cCceEEEEeCCCCEEEE
Confidence 2221111111 011223334455544 3332 256788899999999887753211110 00000011111133444
Q ss_pred EEEEecCCCCEEEEEeCCCeEEEEEcCCCC------ceeEEEEe-cCCCeEEEEEcCCCc-eEEEEeCCCCEEEEECCC-
Q 019405 219 AAFLSIDDHRKFVAGTNDHQVRLYDTSAQR------RPVMSFDF-RETPIKAVAEEPDSF-NIYIGNGSGDLASVDIRT- 289 (341)
Q Consensus 219 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~------~~~~~~~~-~~~~v~~~~~~~~~~-~l~~g~~dg~i~iwd~~~- 289 (341)
+.. ......++..+.+|.+..+....-. .-++.+.. ....|.++..-+++. .|++.+..|..+..++..
T Consensus 149 ~~~--~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~ 226 (323)
T 1wp5_A 149 VHL--TDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEF 226 (323)
T ss_dssp EEE--ECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGS
T ss_pred EEE--eCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHc
Confidence 444 2345567788889998888765311 11222221 234566664434444 677778888887777643
Q ss_pred ------CeEEeE---EeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405 290 ------GKLLGC---FIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (341)
Q Consensus 290 ------~~~~~~---~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 332 (341)
++-+.. ++.. ...+..+....+...++..+..|.+....+..
T Consensus 227 ~~~~Rg~kGv~~~~~~~~~-~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 227 EKATRAKRGVVILRELKAN-PHRISGFVVAQDSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp CCCCTTSCCEECSCCCSSS-CCCEEEEEEECTTCEEEEEETTSCEEEEEGGG
T ss_pred cccCCCCCCEECeeecCCC-CceEEEEEEeCCCCeEEEEeCCCeEEEEEhhh
Confidence 111111 2221 22454433333344555666777766666543
No 359
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=83.83 E-value=27 Score=32.21 Aligned_cols=162 Identities=12% Similarity=0.087 Sum_probs=91.6
Q ss_pred CceEEEEecCCCCEEEEeeCCCeEEEEECCCCc--eeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEE
Q 019405 163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE--KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVR 240 (341)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~ 240 (341)
..|.++..+.++.+.+ |+.+ -+..++..+++ ....+..... ...+ ....|.++.- ..++. |..|+ ++-+.
T Consensus 324 ~~v~~i~~D~~g~lWi-Gt~~-Gl~~~~~~~~~~~~~~~~~~~~~-~~~l-~~~~v~~i~~--d~~g~-lWigt-~~GL~ 395 (758)
T 3ott_A 324 NQFYSLFRDSKGFYWF-GGAN-GLIRFTDPAGERHDAIWYRMGDK-TYPL-SHNRIRHIYE--DKEQQ-LWIAT-DGSIN 395 (758)
T ss_dssp CBEEEEEECTTCCEEE-EETT-EEEEESCTTSSCCCCEEECTTCS-SSCC-SCSCEEEEEE--CTTSC-EEEEE-TTEEE
T ss_pred ceEEEEEEcCCCCEEE-eeCC-cceeecccccccceeEEeccCCc-CCCC-CCCceEEEEE--CCCCC-EEEEe-CCcHh
Confidence 4578888887777655 4444 46677765432 1111111100 0001 1234777776 66664 45555 45789
Q ss_pred EEEcCCCCceeEEEEe-------cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCC------CeEE--eEEec---cccC
Q 019405 241 LYDTSAQRRPVMSFDF-------RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT------GKLL--GCFIG---KCSG 302 (341)
Q Consensus 241 iwd~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~------~~~~--~~~~~---~~~~ 302 (341)
.||..+++ ...+.. ....|.++...+++. |-.|+..+-|.++|..+ .... ..+.. -...
T Consensus 396 ~~~~~~~~--~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 472 (758)
T 3ott_A 396 RYDYATRQ--FIHYNIVDNTGTYNTNWTYYIFEDTAGQ-LWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGM 472 (758)
T ss_dssp EEETTTTE--EEEEEEECCC--CBSSSEEEEEECTTSE-EEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCS
T ss_pred hcCcCCCc--EEEeecCCCcCCCCCceEEEEEEcCCCC-EEEEECCCceEEEccccccccCCcceecccccccccccccc
Confidence 99987643 333321 123578888777775 44566666788888653 1111 11111 1123
Q ss_pred ceeEEEecCCCCEEEEEeCCCcEEEEEcCCCce
Q 019405 303 SIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL 335 (341)
Q Consensus 303 ~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 335 (341)
.|.++...++|.+.+.++..+-|..+|.++++.
T Consensus 473 ~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~ 505 (758)
T 3ott_A 473 FINQIIPDNEGNVWVLLYNNKGIDKINPRTREV 505 (758)
T ss_dssp CEEEEEECTTSCEEEEETTCSSEEEEETTTTEE
T ss_pred eeeeEEEcCCCCEEEEccCCCCcEEEeCCCCce
Confidence 588999988998776434445588889877654
No 360
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=83.27 E-value=36 Score=33.28 Aligned_cols=37 Identities=11% Similarity=-0.024 Sum_probs=30.6
Q ss_pred eEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEe
Q 019405 261 IKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI 297 (341)
Q Consensus 261 v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~ 297 (341)
+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus 240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 3455566777899999999999999999999887753
No 361
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=83.12 E-value=17 Score=29.38 Aligned_cols=214 Identities=10% Similarity=0.027 Sum_probs=109.2
Q ss_pred eeeeecCCCCeEEEEEecCcc----CccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchh-e
Q 019405 16 RALTFDSLGLIKVIEARGEHG----GVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRV-A 90 (341)
Q Consensus 16 ~~~~~~~~g~i~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~-~ 90 (341)
.++..+.+|.+|...+..-.. +.-.....+.+.+.-+.....+. + +.++..+..|.++-.....-.... .
T Consensus 10 ~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~--~---~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 10 IVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNT--H---DYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp EEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEET--T---CEEEEEETTSEEEEEEGGGSCC----
T ss_pred EEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECC--C---CEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 377889999999887765310 00011113433333333222222 2 147777788887666543210000 0
Q ss_pred eecc---CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEE
Q 019405 91 ISNA---GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAF 167 (341)
Q Consensus 91 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~ 167 (341)
-.+. .... -..++.+..+...+... ....++..+..|.++...+..-+... .. -+....+..+..+..
T Consensus 85 ~~G~~i~~~l~-l~~~e~i~~~~~~~~~~-----~~~~ll~~T~~G~~kr~~l~~~~~~r--~~-G~~~i~L~~~d~lv~ 155 (312)
T 1suu_A 85 SKGQNISELIN-LGDQEEILTIKNSKDLT-----DDAYLLLTTASGKIARFESTDFKAVK--SR-GVIVIKLNDKDFVTS 155 (312)
T ss_dssp ---CBGGGTSC-CCTTCCEEEEEEESCCC-----TTCEEEEEETTSEEEEEEGGGGCC-------CEECBCCCTTCCEEE
T ss_pred CCCcChhhccC-CCCCCEEEEEEEeccCC-----CCCEEEEEeCCCeEEEEEHHHhhccC--CC-cEEEEecCCCCEEEE
Confidence 0000 0001 12345666665543210 01178888999999888875443221 11 233445555556666
Q ss_pred EEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCC
Q 019405 168 SKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA 246 (341)
Q Consensus 168 ~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 246 (341)
+....+...++..+.+|.+..+....-..... .......+.+.....+..+.. -.++..+++.+..|..+..++..
T Consensus 156 ~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR-~~~Gv~~i~L~~~d~vv~~~~--v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 156 AEIVFKDEKVICLSKKGSAFIFNSRDVRLTNR-GTQGVCGMKLKEGDLFVKVLS--VKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp EEEECTTCEEEEEETTSEEEEEEGGGSCBCCT-TBCCEECCCCCTTCCEEEEEE--CTTCSEEEEEETTSEEEEEEGGG
T ss_pred EEEeCCCCEEEEEeCCCcEEEEEHHHccccCC-CCCCeEeEEeCCCCEEEEEEE--ECCCCeEEEEECCCceEEEEHHH
Confidence 65555556788889999999888754211100 000001111111234555554 33456788888999999988764
No 362
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=82.19 E-value=21 Score=29.72 Aligned_cols=164 Identities=9% Similarity=-0.026 Sum_probs=84.1
Q ss_pred eeeeecCCCCeEEEEEecCc----cCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEee---CCCCcch
Q 019405 16 RALTFDSLGLIKVIEARGEH----GGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILN---PLNGDLR 88 (341)
Q Consensus 16 ~~~~~~~~g~i~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~---~~~~~~~ 88 (341)
.+++.+.+|.||...+..-. .|.-.....+.+.+. +..+..+. .+ +.|+..+..|.+.-+. +......
T Consensus 9 ~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~-l~~~~~~~-t~---d~ll~fT~~G~~~~~~~~eip~~~r~ 83 (370)
T 3l6v_A 9 VVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDF-IDQLWLVN-TH---DTLLTFTSSGKVFWLPVHQLPEAGSN 83 (370)
T ss_dssp EEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCC-EEEEEEEC-TT---CEEEEEETTSEEEEEEGGGSCBCCTT
T ss_pred EEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCCCE-EEEEEEec-CC---CEEEEEeCCCeEEEEEHHHCcCCCcc
Confidence 47788999999987665420 010112224544332 22222222 22 2466666778765544 3322110
Q ss_pred he-eeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEE
Q 019405 89 VA-ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAF 167 (341)
Q Consensus 89 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~ 167 (341)
.. .....-.. -..++.++.+....... .+..++.++..|.++...+....... . .-+....+..+..+..
T Consensus 84 a~G~~i~~ll~-L~~~e~Iv~~~~~~~~~-----~~~~ll~~T~~G~vKrt~l~e~~~~~--~-~G~~ai~L~~~d~lv~ 154 (370)
T 3l6v_A 84 ARGRPIINWIP-LESGERVQAVLPVREYA-----DNRYVFMATRNGTVKKTPLSEFAFRL--A-RGKIAINLDEGDALVG 154 (370)
T ss_dssp SCCEEGGGSCC-CCTTCCEEEEEEESCCC-----TTCEEEEEETTSEEEEEEGGGGCSCC--T-TCEESSCCCTTCCEEE
T ss_pred cCCcCHhhccC-CCCCCEEEEEEEeccCC-----CCcEEEEEeCCCeEEEeEHHHhhccc--C-CceEEEEeCCCCEEEE
Confidence 00 00000000 02346777766554211 11289999999999988875543221 1 2233334444455555
Q ss_pred EEecCCCCEEEEeeCCCeEEEEECCC
Q 019405 168 SKVDISEKFSLFGGKGVEVNVWDLDK 193 (341)
Q Consensus 168 ~~~~~~~~~l~~~~~d~~v~i~d~~~ 193 (341)
+........++..+.+|.+..++...
T Consensus 155 v~~~~~~~~i~l~T~~G~~irf~~~~ 180 (370)
T 3l6v_A 155 VALTDGDRDVLLFASNGKTVRFGEST 180 (370)
T ss_dssp EEEECSCCEEEEEETTSEEEEEEGGG
T ss_pred EEEeCCCceEEEEeCCCeEEEEEccc
Confidence 55544556777788888888887643
No 363
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=82.18 E-value=8.6 Score=34.00 Aligned_cols=60 Identities=12% Similarity=0.176 Sum_probs=43.2
Q ss_pred CeEEEEEcCCCceEEEEeC------------CCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEE
Q 019405 260 PIKAVAEEPDSFNIYIGNG------------SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASC 319 (341)
Q Consensus 260 ~v~~~~~~~~~~~l~~g~~------------dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 319 (341)
....|.|.++|.+.+.... .+.+..++..+++....+.+.....++.++|+||++.|..+
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 3457999999987774322 12577778888887666655434679999999999977665
No 364
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=81.70 E-value=24 Score=30.24 Aligned_cols=68 Identities=6% Similarity=-0.010 Sum_probs=39.6
Q ss_pred CceEEEEeCCCCEEEEECCC-Ce-EE---eEEeccccCceeEEEecCCCC-EEEEEeCCCcEE------EEEcCCCceee
Q 019405 270 SFNIYIGNGSGDLASVDIRT-GK-LL---GCFIGKCSGSIRSIARHPTLP-IIASCGLDSYLR------FWDIKTRQLLS 337 (341)
Q Consensus 270 ~~~l~~g~~dg~i~iwd~~~-~~-~~---~~~~~~~~~~i~~~~~~~~~~-~l~s~~~dg~v~------iwd~~~~~~~~ 337 (341)
+.+++..-..+.|....+.. +. .. ..+... ...+..|++.|||. ++++.+..|.+. +|.+.....+.
T Consensus 369 g~lfv~~~~~~~i~~v~l~~~g~~~~~~~~~~~~~-~~R~~dv~~gpDG~~Lyv~~d~~G~i~~~~~~~~~~~~~~~~i~ 447 (454)
T 1cru_A 369 NTLLVPSLKRGVIFRIKLDPTYSTTYDDAVPMFKS-NNRYRDVIASPDGNVLYVLTDTAGNVQKDDGSVTNTLENPGSLI 447 (454)
T ss_dssp TEEEEEBSSSCCEEEEEECTTSSSEEEEEEEESCC-SSCEEEEEECTTSSCEEEEECSSCCEECTTSCEECCCSSTTCEE
T ss_pred CcEEEeecCCCEEEEEEECCCCCeeeeeeeeeccc-CCCceeEEECCCCCEEEEEECCCCCCccCCCceeEeccCCCceE
Confidence 33444444556677776653 32 11 122222 35899999999997 666666566654 66665544444
Q ss_pred e
Q 019405 338 A 338 (341)
Q Consensus 338 ~ 338 (341)
+
T Consensus 448 ~ 448 (454)
T 1cru_A 448 K 448 (454)
T ss_dssp E
T ss_pred E
Confidence 3
No 365
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=80.27 E-value=24 Score=29.30 Aligned_cols=247 Identities=12% Similarity=0.051 Sum_probs=122.9
Q ss_pred CCCceEEEEccCCeEEEeeCCCCc-------chheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEccccee
Q 019405 63 QNDPLLAVARKNGLTDILNPLNGD-------LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKA 135 (341)
Q Consensus 63 ~~~~~l~~~~~dg~i~iw~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 135 (341)
|+.+++++.+.+|.|+--.+.+.+ -...+.. ..++.+..+...+.+. .++..+..|.+
T Consensus 5 ~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~l-------ke~D~l~~~~~~~t~d--------~ll~fT~~G~~ 69 (370)
T 3l6v_A 5 APEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAAST-------KEEDFIDQLWLVNTHD--------TLLTFTSSGKV 69 (370)
T ss_dssp CCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEEC-------SCCCCEEEEEEECTTC--------EEEEEETTSEE
T ss_pred cCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceeccc-------CCCCEEEEEEEecCCC--------EEEEEeCCCeE
Confidence 445589999999999976543211 1111111 2346666666555554 67767777776
Q ss_pred EEEEeeecccccccCCce--EEEEEeecCCceEEEEe-c--CCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCc
Q 019405 136 SMRSIEVTKVSAESSCST--VKSWNVCASGTIAFSKV-D--ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGI 210 (341)
Q Consensus 136 ~i~~~~~~~~~~~~~~~~--v~~~~~~~~~~i~~~~~-~--~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~ 210 (341)
.-+.+..-+.......|. +.+..+..+..|..+.. . .++.+++.++..|.++.-.+....... ......+.+
T Consensus 70 ~~~~~~eip~~~r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~---~~G~~ai~L 146 (370)
T 3l6v_A 70 FWLPVHQLPEAGSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRL---ARGKIAINL 146 (370)
T ss_dssp EEEEGGGSCBCCTTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCC---TTCEESSCC
T ss_pred EEEEHHHCcCCCcccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhccc---CCceEEEEe
Confidence 655543322211111111 11223334455555433 2 245689999999999988765322110 000001111
Q ss_pred cCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCC------ceeEEEEe-cCCCeEEEEEcC---------------
Q 019405 211 FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR------RPVMSFDF-RETPIKAVAEEP--------------- 268 (341)
Q Consensus 211 ~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~------~~~~~~~~-~~~~v~~~~~~~--------------- 268 (341)
.....+-.+.. ......++..+.+|.+..+....-. .-++.+.. ....|.++...+
T Consensus 147 ~~~d~lv~v~~--~~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~ 224 (370)
T 3l6v_A 147 DEGDALVGVAL--TDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAE 224 (370)
T ss_dssp CTTCCEEEEEE--ECSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEECCC-------------
T ss_pred CCCCEEEEEEE--eCCCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEEEEEecccccccccccccccc
Confidence 11233444444 2344567777888888888754311 00111111 223454444333
Q ss_pred --------------------CCceEEEEeCCCCEEEEECCCC-------e--EEeEEeccccCceeEEEecCCCCEEEEE
Q 019405 269 --------------------DSFNIYIGNGSGDLASVDIRTG-------K--LLGCFIGKCSGSIRSIARHPTLPIIASC 319 (341)
Q Consensus 269 --------------------~~~~l~~g~~dg~i~iwd~~~~-------~--~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 319 (341)
++..+++.+..|..+...+... + ....+... .+.+..+.+..+...++..
T Consensus 225 ~~~~t~~g~~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~-~g~lv~~~~v~~~d~i~li 303 (370)
T 3l6v_A 225 EVVETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTER-NGKLVRAVLLGSTDEVMLI 303 (370)
T ss_dssp ----------------------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTT-TCSEEEEEEECTTCEEEEE
T ss_pred ccccccccccccccccccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCC-CCcEEEEEEeCCCceEEEE
Confidence 3457888888898888876421 1 11222222 3345554443444445555
Q ss_pred eCCCcEEEEEc
Q 019405 320 GLDSYLRFWDI 330 (341)
Q Consensus 320 ~~dg~v~iwd~ 330 (341)
+..|.+.-..+
T Consensus 304 T~~G~~iR~~v 314 (370)
T 3l6v_A 304 SDGGTLVRTRG 314 (370)
T ss_dssp ETTCCEEEEEG
T ss_pred cCCCeEEEeeH
Confidence 56665554444
No 366
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=77.11 E-value=4 Score=37.12 Aligned_cols=35 Identities=14% Similarity=0.211 Sum_probs=28.6
Q ss_pred ceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405 303 SIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (341)
Q Consensus 303 ~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 339 (341)
.|.++.+ +..++++-+.|..+|+|++++++++.+.
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~ 257 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDY 257 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEee
Confidence 4555544 4679999999999999999999988764
No 367
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=76.17 E-value=27 Score=27.62 Aligned_cols=144 Identities=10% Similarity=-0.020 Sum_probs=72.0
Q ss_pred ceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEE
Q 019405 164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD 243 (341)
Q Consensus 164 ~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd 243 (341)
.|..++...+ ..+.-. +|.|+.|-....-++- .+.. ....|..++. ... +.+.-. ||.|..|-
T Consensus 103 ~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg---~~~~------~~~~i~~i~~--G~~--~~~~l~-~G~v~~wG 165 (282)
T 3qhy_B 103 GVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTT---VPAE------AQSGVTALDG--GVY--TALAVK-NGGVIAWG 165 (282)
T ss_dssp SEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTS---CCGG------GGSSEEEEEE--CSS--EEEEEE-TTEEEEEE
T ss_pred CeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCC---CCcc------CCCCeEEEEc--ccC--EEEEEE-CCEEEEec
Confidence 5666665443 333334 8999999765422111 0000 1133666665 322 223333 79999997
Q ss_pred cCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCC
Q 019405 244 TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDS 323 (341)
Q Consensus 244 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg 323 (341)
.....+ +-.-..-...|..++..... .++. .||.|+.|=......+. +.......|..++.......+++ ||
T Consensus 166 ~n~~gq-lg~p~~~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~gqlg-~p~~~~~~v~~i~~G~~h~~al~---~g 237 (282)
T 3qhy_B 166 DNYFGQ-TTVPAEAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRYKQTT-VPTEALSGVSAIASGEWYSLALK---NG 237 (282)
T ss_dssp CCTTST-TSCCGGGGSSEEEEEECSSE-EEEE--ETTEEEEEECCTTSTTC-CCGGGGSSCCEEEECSSCEEEEE---TT
T ss_pred CCCCCC-CCCceecCCCeEEEEecCCE-EEEE--ECCeEEEEECCCCCCCC-CCcccCCCceEEEcCCCEEEEEE---CC
Confidence 664322 11000012456677664442 3334 58999999654321111 11111345677765443333333 88
Q ss_pred cEEEEEcCC
Q 019405 324 YLRFWDIKT 332 (341)
Q Consensus 324 ~v~iwd~~~ 332 (341)
.|+.|-...
T Consensus 238 ~v~~wG~n~ 246 (282)
T 3qhy_B 238 KVIAWGSSR 246 (282)
T ss_dssp EEEEESTTC
T ss_pred EEEEecCCC
Confidence 999986554
No 368
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=75.57 E-value=29 Score=27.76 Aligned_cols=99 Identities=10% Similarity=0.020 Sum_probs=57.4
Q ss_pred cCCCCEEEEEeCC--------------CeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEe----CCCCEEEE
Q 019405 224 IDDHRKFVAGTND--------------HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN----GSGDLASV 285 (341)
Q Consensus 224 ~~~~~~l~~~~~d--------------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~----~dg~i~iw 285 (341)
++++.+|+-.... ..|+..++...+ ...+.. .. ...|++++..|+-.. ....|+.-
T Consensus 61 ~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~--~~~l~~--~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~ 134 (302)
T 3s25_A 61 NADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHG--STVLDP--DP--CIYASLIGNYIYYLHYDTQTATSLYRI 134 (302)
T ss_dssp EECSSEEEEEEECC------CCSSCCSEEEEEEETTSCC--CEEEEC--SC--EEEEEEETTEEEEEEESSSSCEEEEEE
T ss_pred EEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCc--ceEeec--CC--ccEEEEeCCEEEEEeecCCCCceEEEE
Confidence 5677777766543 367777777654 233332 22 236778888887655 33456666
Q ss_pred ECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeC-CCcEEEEEcCCCc
Q 019405 286 DIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGL-DSYLRFWDIKTRQ 334 (341)
Q Consensus 286 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-dg~v~iwd~~~~~ 334 (341)
++... ....+..+ . + .+++++++.|.-.+. ...|..-++..+.
T Consensus 135 ~~dGs-~~~~lt~~-~--~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~ 178 (302)
T 3s25_A 135 RIDGE-EKKKIKNH-Y--L--FTCNTSDRYFYYNNPKNGQLYRYDTASQS 178 (302)
T ss_dssp ETTSC-CCEEEESS-C--C--CCSEEETTEEEEECTTTCCEEEEETTTTE
T ss_pred ECCCC-CeEEEeCC-C--c--eEeeEECCEEEEEeCCCceEEEEECCCCC
Confidence 66533 33334333 2 2 456778887775554 5677777776543
No 369
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=71.34 E-value=34 Score=26.62 Aligned_cols=150 Identities=10% Similarity=0.064 Sum_probs=83.4
Q ss_pred eEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccc
Q 019405 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS 146 (341)
Q Consensus 67 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~ 146 (341)
.+++.+.+|.|+--....-. ...+. ...++.+..+...+... .++..+..|.+.-..+..-+..
T Consensus 4 v~v~lT~~G~iKr~~~~~~~-~~~~~-------lke~D~l~~~~~~~t~~--------~ll~~T~~Gr~~~~~~~elp~~ 67 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDID-APGLN-------YKAGDSFKAAVKGKSNQ--------PVVFVDSTGRSYAIDPITLPSA 67 (256)
T ss_dssp EEEEEETTSEEEEEESSCCC-STTSC-------CCTTCCEEEEEEEETTS--------CEEEEETTSEEEEECGGGSCCS
T ss_pred EEEEEeCCCEEEEeeCCcCC-ceecc-------CCCCCEEEEEEEeCCCC--------EEEEEeCCCeEEEEEHHHCCCc
Confidence 46677888998866543211 11111 12346676665555555 6777777887765554332222
Q ss_pred cccCCce-E-EEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCC-------ceeeecCCCCCCccCccCCeeee
Q 019405 147 AESSCST-V-KSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC-------EKIWTAKPPPKNSLGIFTPTWFT 217 (341)
Q Consensus 147 ~~~~~~~-v-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~-------~~~~~~~~~~~~~~~~~~~~~v~ 217 (341)
. ..|. + ...++..+..|..+....++.+++.++..|.++...+..- .....+.. ...+-
T Consensus 68 r--~~G~~i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~----------~d~lv 135 (256)
T 1zvt_A 68 R--GQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPE----------NAHVM 135 (256)
T ss_dssp S--SCCEEGGGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCT----------TCCBC
T ss_pred C--CCCeEeeeeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECC----------CCEEE
Confidence 1 1111 1 1223344556666644345667888899999998887431 12222221 12233
Q ss_pred EEEEEec-CCCCEEEEEeCCCeEEEEEcCC
Q 019405 218 SAAFLSI-DDHRKFVAGTNDHQVRLYDTSA 246 (341)
Q Consensus 218 ~~~~~~~-~~~~~l~~~~~d~~i~iwd~~~ 246 (341)
.+.. . .+...++..+.+|.+..+....
T Consensus 136 ~~~~--~~~~~~~i~l~T~~G~~lrf~~~e 163 (256)
T 1zvt_A 136 PPVV--IEDASDMLLAITQAGRMLMFPVSD 163 (256)
T ss_dssp CCEE--CCCTTCEEEEEETTSEEEEEEGGG
T ss_pred EEEE--ecCCCCEEEEEcCCCeEEEEEHHH
Confidence 3333 3 3455788888999998888754
No 370
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=69.36 E-value=49 Score=27.60 Aligned_cols=111 Identities=11% Similarity=0.002 Sum_probs=52.6
Q ss_pred CceEEEEecCC----CCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccC-CeeeeEEEEEec-CCCCEEEEEeCC
Q 019405 163 GTIAFSKVDIS----EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFT-PTWFTSAAFLSI-DDHRKFVAGTND 236 (341)
Q Consensus 163 ~~i~~~~~~~~----~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~-~~~~~l~~~~~d 236 (341)
..+..++++|+ ++.|+.....+ -++|.+.+......-.......+.... ...-..+++ . .+|.++++--..
T Consensus 220 ~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~--D~~~G~ly~~~~~~ 296 (381)
T 3q6k_A 220 AGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAY--DPKTKVIFFAEANT 296 (381)
T ss_dssp CCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEE--CTTTCEEEEEESSS
T ss_pred cCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEE--eCCCCeEEEEeccC
Confidence 46888999987 67777666554 233433321000000000000000000 011223444 4 567777777788
Q ss_pred CeEEEEEcCC-CC--ceeEEEEec--CCCeEEEEEcCCCceEEEE
Q 019405 237 HQVRLYDTSA-QR--RPVMSFDFR--ETPIKAVAEEPDSFNIYIG 276 (341)
Q Consensus 237 ~~i~iwd~~~-~~--~~~~~~~~~--~~~v~~~~~~~~~~~l~~g 276 (341)
..|..|+..+ .- .....+... -.....+.+.++|.+.+..
T Consensus 297 ~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 297 KQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp SEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred CeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 8999999875 11 112222221 1235566666555444443
No 371
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=66.75 E-value=67 Score=29.42 Aligned_cols=37 Identities=14% Similarity=0.373 Sum_probs=28.2
Q ss_pred eeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEe
Q 019405 215 WFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF 256 (341)
Q Consensus 215 ~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 256 (341)
.|.++.+ +..++++-+.|+++|+|++.+++. +....-
T Consensus 223 ~Is~~~~----~~~fLftL~~Dh~LRiWsL~t~~l-v~t~DL 259 (729)
T 3f7f_A 223 VISCKLF----HERYLIVLTQNCHLKIWDLTSFTL-IQDYDM 259 (729)
T ss_dssp EEEEEEE----TTTEEEEEETTCEEEEEETTTTEE-EEEEET
T ss_pred eEEEecc----CCcEEEEEEcCCeEEEEEcCCCce-EEeecc
Confidence 4666555 477999999999999999999764 555443
No 372
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=60.22 E-value=1.2e+02 Score=28.95 Aligned_cols=38 Identities=11% Similarity=-0.023 Sum_probs=32.5
Q ss_pred CeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEe
Q 019405 260 PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI 297 (341)
Q Consensus 260 ~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~ 297 (341)
.+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 45667777888899999999999999999999887753
No 373
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=53.79 E-value=1.2e+02 Score=26.90 Aligned_cols=148 Identities=17% Similarity=0.175 Sum_probs=73.7
Q ss_pred eEEEEECCCCceeeecCCCC--CCc------cCccCCeeeeEEEEEecCCCCEEEEEe---CCCeEEEEEcCCCCceeEE
Q 019405 185 EVNVWDLDKCEKIWTAKPPP--KNS------LGIFTPTWFTSAAFLSIDDHRKFVAGT---NDHQVRLYDTSAQRRPVMS 253 (341)
Q Consensus 185 ~v~i~d~~~~~~~~~~~~~~--~~~------~~~~~~~~v~~~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~ 253 (341)
.|.++|-.+|+.+..+.... ... ..-+......+++++ .-+...++.+- ....|..||.+.++. ...
T Consensus 230 yL~vfdG~TG~~l~~~~~~p~rg~~~~WGD~ygnR~drf~~~vayL-DG~~Ps~v~~rGyYtr~~v~A~d~~~~~L-~~~ 307 (591)
T 2zux_A 230 YLTVFQGSTGKELVTANFEPARGNVSDWGDSYGNRVDRFLAGIAYL-DGQRPSLIMTRGYYAKTMLVAYNFRDGKL-SKL 307 (591)
T ss_dssp EEEEEETTTCCEEEEEECSSCCCCGGGGTCSSSSGGGCEEEEEECT-TSSSCEEEEEECCSSSCEEEEEEEETTEE-EEE
T ss_pred EEEEEeCCCCCEEecccCCCCCCcccccccccccccccceeeEEEC-CCCCceEEEeccccceeEEEEEECCCCce-EEE
Confidence 38899988988887655421 100 000111113344443 22222333332 223578888876542 222
Q ss_pred EEecC-------------CCeEEEEEcCCC-ceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCC--EEE
Q 019405 254 FDFRE-------------TPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP--IIA 317 (341)
Q Consensus 254 ~~~~~-------------~~v~~~~~~~~~-~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~ 317 (341)
+.... ....-..+.-|| .-|+.|+. ++| .+|+.+......|...+.-..|.|+.+ .++
T Consensus 308 W~~d~~~~~~~~~~gqg~h~~~vaDVDgDG~dEIv~Gs~-----~iD-~dG~~L~st~~gHGDa~hv~dldP~r~GlEv~ 381 (591)
T 2zux_A 308 WTLDSSKSGNEAFAGQGNHNLSIADVDGDGKDEIIFGSM-----AVD-HDGKGMYSTGLGHGDALHTGDLDPGRPGLEVF 381 (591)
T ss_dssp EEEETTSTTCGGGSSCCCSCCEEECCSSSSSCEEEETTE-----EEC-TTSCEEEECSCCCCSCEEEECCCTTSSSCEEE
T ss_pred EEecCCCCCcccccccCCCCCeeEeCCCCCCceEEEeee-----EEC-CCCCEeeeCCCCCCCeeEEeecCCCCCCcEEE
Confidence 32211 122223333444 22333331 223 245555554433377777778888753 566
Q ss_pred EEeCCC----cEEEEEcCCCceeeeec
Q 019405 318 SCGLDS----YLRFWDIKTRQLLSAVC 340 (341)
Q Consensus 318 s~~~dg----~v~iwd~~~~~~~~~~~ 340 (341)
.+.+++ -..+.|..+|+.+...+
T Consensus 382 ~~~E~~~~~~G~~~~dA~tG~vlw~~~ 408 (591)
T 2zux_A 382 QVHEDKNAKYGLSFRDAATGKILWGVY 408 (591)
T ss_dssp EECCCTTSSCSEEEEETTTCCEEEEEC
T ss_pred EEecCCCCCCccEEEECCCCcEEEEcC
Confidence 665542 35568889999887654
No 374
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=51.89 E-value=65 Score=28.75 Aligned_cols=59 Identities=14% Similarity=0.141 Sum_probs=37.7
Q ss_pred eeEEEEEecCCCCEEEEEeCC------------CeEEEEEcCCCCceeEEEEe-cCCCeEEEEEcCCCceEEEEe
Q 019405 216 FTSAAFLSIDDHRKFVAGTND------------HQVRLYDTSAQRRPVMSFDF-RETPIKAVAEEPDSFNIYIGN 277 (341)
Q Consensus 216 v~~~~~~~~~~~~~l~~~~~d------------~~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~g~ 277 (341)
.--|+| ++.|++++.-..+ ..+.+.+..+++. .+.+.. ....++.++|+||++.|++.-
T Consensus 478 PDNL~f--d~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~-~rf~~~P~gaE~TG~~fspDg~tlfvni 549 (592)
T 3zwu_A 478 PDGLGF--DKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEI-RRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp EEEEEE--CTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCE-EEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CcceEE--CCCCCEEEEecCCCcccccccccccceEEEEeCCCCeE-EEEEeCCCCccCcCeeECCCCCEEEEEE
Confidence 456788 8888866654322 2355555555442 333333 356799999999998887753
No 375
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=49.75 E-value=89 Score=24.25 Aligned_cols=155 Identities=8% Similarity=0.091 Sum_probs=82.2
Q ss_pred eeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCC---CCcchheeec
Q 019405 17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPL---NGDLRVAISN 93 (341)
Q Consensus 17 ~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~---~~~~~~~~~~ 93 (341)
.+..+.+|.||....... +.. ...+.+.+.-+.....+... .|+..+..|.++-.... .++.... ..
T Consensus 5 ~v~lT~~G~iKr~~~~~~--~~~--~~~lke~D~l~~~~~~~t~~-----~ll~~T~~Gr~~~~~~~elp~~r~~G~-~i 74 (256)
T 1zvt_A 5 TIVLSQMGWVRSAKGHDI--DAP--GLNYKAGDSFKAAVKGKSNQ-----PVVFVDSTGRSYAIDPITLPSARGQGE-PL 74 (256)
T ss_dssp EEEEETTSEEEEEESSCC--CST--TSCCCTTCCEEEEEEEETTS-----CEEEEETTSEEEEECGGGSCCSSSCCE-EG
T ss_pred EEEEeCCCEEEEeeCCcC--Cce--eccCCCCCEEEEEEEeCCCC-----EEEEEeCCCeEEEEEHHHCCCcCCCCe-Ee
Confidence 466789999988775543 111 11344444444333333222 37777778886655432 2211100 00
Q ss_pred cCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEec-C
Q 019405 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD-I 172 (341)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~-~ 172 (341)
..... -..++.++.+...+... .++.++..|.++...+..-.... .+-+....+.....+..+... .
T Consensus 75 ~~~i~-L~~~e~Iv~~~~~~~~~--------~lll~T~~G~~Kr~~~~e~~~~~---r~G~~~i~L~~~d~lv~~~~~~~ 142 (256)
T 1zvt_A 75 TGKLT-LPPGATVDHMLMESDDQ--------KLLMASDAGYGFVCTFNDLVARN---RAGKALITLPENAHVMPPVVIED 142 (256)
T ss_dssp GGTCC-CCTTCCEEEEECCCTTC--------EEEEEBTTSEEEEEEGGGGCCCS---TTCEECBCCCTTCCBCCCEECCC
T ss_pred eeeec-CCCCCEEEEEEEeCCCC--------EEEEEeCCCeEEEeEHHHhcccC---cCceEEEEECCCCEEEEEEEecC
Confidence 00111 12346777765443333 68899999999988875432211 112233333334444444443 3
Q ss_pred CCCEEEEeeCCCeEEEEECCC
Q 019405 173 SEKFSLFGGKGVEVNVWDLDK 193 (341)
Q Consensus 173 ~~~~l~~~~~d~~v~i~d~~~ 193 (341)
++..++..+.+|.+..++...
T Consensus 143 ~~~~i~l~T~~G~~lrf~~~e 163 (256)
T 1zvt_A 143 ASDMLLAITQAGRMLMFPVSD 163 (256)
T ss_dssp TTCEEEEEETTSEEEEEEGGG
T ss_pred CCCEEEEEcCCCeEEEEEHHH
Confidence 455788888999998888754
No 376
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=49.41 E-value=1e+02 Score=27.42 Aligned_cols=62 Identities=11% Similarity=0.101 Sum_probs=39.9
Q ss_pred eeeeEEEEEecCCCCEEEEEeC------------CCeEEEEEcCCCCceeEEEEe-cCCCeEEEEEcCCCceEEEEeC
Q 019405 214 TWFTSAAFLSIDDHRKFVAGTN------------DHQVRLYDTSAQRRPVMSFDF-RETPIKAVAEEPDSFNIYIGNG 278 (341)
Q Consensus 214 ~~v~~~~~~~~~~~~~l~~~~~------------d~~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~g~~ 278 (341)
.....+.| .++|.+.+.... .+.+..++..+++. ...+.. ....++.++|+||++.|++.-+
T Consensus 476 nsPDnL~f--d~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel-~~fl~~P~~aEpnGiafSPD~ktLfV~vQ 550 (592)
T 4a9v_A 476 NSPDGLGF--DKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEI-RRFMVGPIGCEVTGISFSPDQKTLFVGIQ 550 (592)
T ss_dssp CCEEEEEE--CTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCE-EEEEECCTTCEEEEEEECTTSSEEEEEEE
T ss_pred CCCCceEE--CCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeE-EEEEeCCCCccccCCEECCCCCEEEEEEe
Confidence 44677889 788877763321 12566666665552 333332 2356899999999998887653
No 377
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=48.49 E-value=1.2e+02 Score=25.21 Aligned_cols=201 Identities=10% Similarity=-0.017 Sum_probs=96.0
Q ss_pred eeEEEcccceeEEEEeeecccc-cccCCce--EEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecC
Q 019405 125 TLLTCTTKGKASMRSIEVTKVS-AESSCST--VKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAK 201 (341)
Q Consensus 125 ~l~~~~~~g~~~i~~~~~~~~~-~~~~~~~--v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~ 201 (341)
..+.-..+|.+..|-....... .+..+.. ...........+..++++......+.-..||.|+.|-....-++-.-.
T Consensus 64 ~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~ 143 (389)
T 3kci_A 64 TLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGN 143 (389)
T ss_dssp EEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSS
T ss_pred eEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCC
Confidence 5556677888888865433211 1111111 111111112345556776666777777889999999654311100000
Q ss_pred CC---CCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCc-------eeEE---EE-ecCCCeEEEEEc
Q 019405 202 PP---PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR-------PVMS---FD-FRETPIKAVAEE 267 (341)
Q Consensus 202 ~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-------~~~~---~~-~~~~~v~~~~~~ 267 (341)
.. ............|..++. ...+.+.-..+|.|+.|-.....+ .... +. .....|..++..
T Consensus 144 ~~~~~~p~~v~~l~~~~i~~va~----G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G 219 (389)
T 3kci_A 144 RSPCDRPRVIESLRGIEVVDVAA----GGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACG 219 (389)
T ss_dssp CCCEEEEEECGGGTTSCEEEEEE----CSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC
T ss_pred CccCcCCeEecccCCCeEEEEEe----CcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEc
Confidence 00 000000000123556655 344555666899999997543110 0000 10 122356666654
Q ss_pred CCCceEEEEeCCCCEEEEECCCC-----------eEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcC
Q 019405 268 PDSFNIYIGNGSGDLASVDIRTG-----------KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331 (341)
Q Consensus 268 ~~~~~l~~g~~dg~i~iwd~~~~-----------~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~ 331 (341)
....+.++-..||.|+.|-.... .....+.......|..++.. ..+.+.-..||.|+.|-..
T Consensus 220 ~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G--~~hs~alt~~G~v~~wG~n 292 (389)
T 3kci_A 220 SGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECG--SQFSVALTKSGAVYTWGKG 292 (389)
T ss_dssp CSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEE--TTEEEEEETTSCEEEEECC
T ss_pred CCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCC--CCEEEEEeCCCeEEEEeCC
Confidence 43345555677899999954311 11111221112245555543 3344445678888888654
No 378
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=38.30 E-value=1.1e+02 Score=26.86 Aligned_cols=68 Identities=13% Similarity=0.041 Sum_probs=43.2
Q ss_pred CeEEEEEcCCC--ceEEEEeCCCCEEEEECCCC----eEEeEEeccc-cCcee-EEEecCCCCEEEEEeCCCcEEE
Q 019405 260 PIKAVAEEPDS--FNIYIGNGSGDLASVDIRTG----KLLGCFIGKC-SGSIR-SIARHPTLPIIASCGLDSYLRF 327 (341)
Q Consensus 260 ~v~~~~~~~~~--~~l~~g~~dg~i~iwd~~~~----~~~~~~~~~~-~~~i~-~~~~~~~~~~l~s~~~dg~v~i 327 (341)
..++++....+ ..++.|..+|.|.-..+... ..+..+.... ..+|. .|.++++..+|..++.++.++|
T Consensus 401 ~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 401 RLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred ceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 46666655433 56778999998765544322 2333333221 45785 8999999999998887765544
No 379
>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis}
Probab=38.00 E-value=2.2e+02 Score=25.44 Aligned_cols=53 Identities=17% Similarity=0.016 Sum_probs=34.2
Q ss_pred CCCeEEeEEeccccCceeEEEecCCCC--EEEEEeCC----CcEEEEEcCCCceeeeec
Q 019405 288 RTGKLLGCFIGKCSGSIRSIARHPTLP--IIASCGLD----SYLRFWDIKTRQLLSAVC 340 (341)
Q Consensus 288 ~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~s~~~d----g~v~iwd~~~~~~~~~~~ 340 (341)
.+|+.+......|...+.--.|.|+.+ .++.+.++ .-..+.|.++|+.+...+
T Consensus 354 ~dG~~L~st~~gHGDa~hv~d~dP~rpGlev~~~~E~~~~~~G~~~~DA~tG~vlw~~~ 412 (620)
T 2zuy_A 354 HDGTGLYSTGLGHGDAMHVGDLDPSRKGLEVFQVHEDATKPYGLSLRDAGTGEILWGVH 412 (620)
T ss_dssp TTSSEEEECSCCCCSCEEEECSCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEEEEEC
T ss_pred CCCCEEeecCCCCCceeEEEecCCCCCCCEEEEEecCCCCCCceEEEECCCCcEEEEec
Confidence 345555554433377777777888744 55555544 256788999999887764
No 380
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=37.50 E-value=1.9e+02 Score=25.12 Aligned_cols=68 Identities=12% Similarity=0.093 Sum_probs=43.1
Q ss_pred CeEEEEEcC----CC--ceEEEEeCCCCEEEEECC-CCe-------EEeEEecc-ccCceeEEEecCCCCEEEEEeCCCc
Q 019405 260 PIKAVAEEP----DS--FNIYIGNGSGDLASVDIR-TGK-------LLGCFIGK-CSGSIRSIARHPTLPIIASCGLDSY 324 (341)
Q Consensus 260 ~v~~~~~~~----~~--~~l~~g~~dg~i~iwd~~-~~~-------~~~~~~~~-~~~~i~~~~~~~~~~~l~s~~~dg~ 324 (341)
..++|+... ++ ..++.|..+|.|.-.-+. .+. .+..+... ...+|..|.++++..+|..++.++.
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V 484 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGV 484 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCE
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeE
Confidence 456666543 23 457789999987544332 211 22233321 1578999999999999999988876
Q ss_pred EEE
Q 019405 325 LRF 327 (341)
Q Consensus 325 v~i 327 (341)
++|
T Consensus 485 ~~v 487 (495)
T 1q47_A 485 AQL 487 (495)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 381
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=36.12 E-value=1.6e+02 Score=23.14 Aligned_cols=205 Identities=12% Similarity=0.028 Sum_probs=95.6
Q ss_pred CCCeEEEEEecC-ccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCC
Q 019405 23 LGLIKVIEARGE-HGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQP 101 (341)
Q Consensus 23 ~g~i~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 101 (341)
||.+..|-.... ..|.+.. ....+..++...... ++. . ||.|..|-....-.+.. .. .
T Consensus 41 ~G~v~~wG~n~~Gqlg~p~~------~~~~i~~ia~G~~hs-----~~l-~-~G~v~~wG~n~~Gqlg~-P~-------~ 99 (282)
T 3qhy_B 41 GGKVLGWGANLNGQLTMPAA------TQSGVDAIAAGNYHS-----LAL-K-DGEVIAWGGNEDGQTTV-PA-------E 99 (282)
T ss_dssp TTEEEEEECCSSSTTSCCGG------GGSCCCEEEECSSEE-----EEE-E-TTEEEEEECCTTSTTCC-CG-------G
T ss_pred CCEEEEEeCCCCCCCCCCcc------CCCCEEEEEeCCCEE-----EEE-E-CCEEEEeeCCCCCCCCC-Cc-------c
Confidence 677777765543 1232211 122444455443333 444 4 89999997654222211 00 0
Q ss_pred CCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEee
Q 019405 102 EDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG 181 (341)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~ 181 (341)
....+..+..-.. ..+.-. +|.+..|-....... + + .......|..++..... .+.-.
T Consensus 100 ~~~~v~~ia~G~~----------hs~al~-~G~v~~wG~n~~gql-----g---~-~~~~~~~i~~i~~G~~~--~~~l~ 157 (282)
T 3qhy_B 100 ARSGVDAIAAGAW----------ASYALK-DGKVIAWGDDSDGQT-----T---V-PAEAQSGVTALDGGVYT--ALAVK 157 (282)
T ss_dssp GSSSEEEEEEETT----------EEEEEE-TTEEEEEECCTTSTT-----S---C-CGGGGSSEEEEEECSSE--EEEEE
T ss_pred cCCCeEEEECcCC----------EEEEEe-CCeEEEecCCCCCcC-----C---C-CccCCCCeEEEEcccCE--EEEEE
Confidence 0133444433211 333344 888888865432211 0 0 01112345555554322 22223
Q ss_pred CCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCe
Q 019405 182 KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPI 261 (341)
Q Consensus 182 ~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v 261 (341)
||.|+.|-....-++. .+. . ....|..++. .... .++. .||.|..|-.....+ +-.-......|
T Consensus 158 -~G~v~~wG~n~~gqlg---~p~----~--~~~~v~~i~~--G~~h-s~al--~~G~v~~wG~n~~gq-lg~p~~~~~~v 221 (282)
T 3qhy_B 158 -NGGVIAWGDNYFGQTT---VPA----E--AQSGVDDVAG--GIFH-SLAL--KDGKVIAWGDNRYKQ-TTVPTEALSGV 221 (282)
T ss_dssp -TTEEEEEECCTTSTTS---CCG----G--GGSSEEEEEE--CSSE-EEEE--ETTEEEEEECCTTST-TCCCGGGGSSC
T ss_pred -CCEEEEecCCCCCCCC---Cce----e--cCCCeEEEEe--cCCE-EEEE--ECCeEEEEECCCCCC-CCCCcccCCCc
Confidence 7899999765422111 010 0 0133666666 3322 3333 599999997665322 10000112356
Q ss_pred EEEEEcCCCceEEEEeCCCCEEEEECCC
Q 019405 262 KAVAEEPDSFNIYIGNGSGDLASVDIRT 289 (341)
Q Consensus 262 ~~~~~~~~~~~l~~g~~dg~i~iwd~~~ 289 (341)
..++..... .++.. ||.|+.|=...
T Consensus 222 ~~i~~G~~h-~~al~--~g~v~~wG~n~ 246 (282)
T 3qhy_B 222 SAIASGEWY-SLALK--NGKVIAWGSSR 246 (282)
T ss_dssp CEEEECSSC-EEEEE--TTEEEEESTTC
T ss_pred eEEEcCCCE-EEEEE--CCEEEEecCCC
Confidence 666655443 33333 89999996544
No 382
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=33.62 E-value=2.1e+02 Score=23.84 Aligned_cols=154 Identities=10% Similarity=-0.005 Sum_probs=80.9
Q ss_pred ceEEEEec---CC----CCEEEEe-eCCCeEEEEECCCCceeeecCCCCCC----ccCc-----cCCeeeeEEEEEecCC
Q 019405 164 TIAFSKVD---IS----EKFSLFG-GKGVEVNVWDLDKCEKIWTAKPPPKN----SLGI-----FTPTWFTSAAFLSIDD 226 (341)
Q Consensus 164 ~i~~~~~~---~~----~~~l~~~-~~d~~v~i~d~~~~~~~~~~~~~~~~----~~~~-----~~~~~v~~~~~~~~~~ 226 (341)
.+..+.++ ++ +.+++.. +..+.|.++|+.+++..+........ .+.+ .-...+..++. +|+
T Consensus 153 ~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaL--sp~ 230 (381)
T 3q6k_A 153 YFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITL--GDR 230 (381)
T ss_dssp GEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEE--CCC
T ss_pred ccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEe--cCC
Confidence 35566665 22 3343333 24578999999998776655311100 0000 00235778888 666
Q ss_pred ----CCEEEEEeCCCeEEEEEcCC-----C--CceeEEEEecC--CCeEEEEEc-CCCceEEEEeCCCCEEEEECCC-C-
Q 019405 227 ----HRKFVAGTNDHQVRLYDTSA-----Q--RRPVMSFDFRE--TPIKAVAEE-PDSFNIYIGNGSGDLASVDIRT-G- 290 (341)
Q Consensus 227 ----~~~l~~~~~d~~i~iwd~~~-----~--~~~~~~~~~~~--~~v~~~~~~-~~~~~l~~g~~dg~i~iwd~~~-~- 290 (341)
++.|.-....+. ++|.+.+ . ...++.+-... ..-..+++. .+|.++++--..+.|..|+..+ .
T Consensus 231 ~~~~~~~LYf~plss~-~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~ 309 (381)
T 3q6k_A 231 DSEGNRPAYYLAGSAI-KVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPL 309 (381)
T ss_dssp CTTSCCEEEEEESSCS-EEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSB
T ss_pred cCCCCeEEEEEECCCC-cEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCcc
Confidence 566666554442 3443321 1 11233332221 233456675 5777777777788999999875 1
Q ss_pred --eEEeEE-eccccCceeEEEecCCCCEEEEEe
Q 019405 291 --KLLGCF-IGKCSGSIRSIARHPTLPIIASCG 320 (341)
Q Consensus 291 --~~~~~~-~~~~~~~i~~~~~~~~~~~l~s~~ 320 (341)
+....+ +...-.....+.+.++|.+.+.++
T Consensus 310 ~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 310 RMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp CGGGEEEEEECTTCCSEEEEEECTTSCEEEEEC
T ss_pred ccCceEEEEECCCccccCeEEECCCCeEEEEEC
Confidence 111111 211133567777777777555543
No 383
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=33.21 E-value=1.3e+02 Score=26.42 Aligned_cols=69 Identities=13% Similarity=0.114 Sum_probs=42.5
Q ss_pred eeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCC---ceeEEEEe--cCCCeE-EEEEcCCCceEEEEeCCCCEEE
Q 019405 216 FTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR---RPVMSFDF--RETPIK-AVAEEPDSFNIYIGNGSGDLAS 284 (341)
Q Consensus 216 v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~--~~~~v~-~~~~~~~~~~l~~g~~dg~i~i 284 (341)
.++++.....+...+..|+.+|.|.-..+.... ..+..+.. ...+|. .+.++++..+|++++.++.++|
T Consensus 402 lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 402 LTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp EEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred eEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 444544322344567788899988665554322 11233322 246785 8999999999999987765555
No 384
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=29.14 E-value=3.4e+02 Score=24.89 Aligned_cols=96 Identities=4% Similarity=-0.018 Sum_probs=54.0
Q ss_pred CCCeEEEEEcCCCC------ceeEE-EEe-cCCCeEEEEEcCCCceEEEEeCCCC--EEEEECCCCe-EEeE-EeccccC
Q 019405 235 NDHQVRLYDTSAQR------RPVMS-FDF-RETPIKAVAEEPDSFNIYIGNGSGD--LASVDIRTGK-LLGC-FIGKCSG 302 (341)
Q Consensus 235 ~d~~i~iwd~~~~~------~~~~~-~~~-~~~~v~~~~~~~~~~~l~~g~~dg~--i~iwd~~~~~-~~~~-~~~~~~~ 302 (341)
..+.|...|+.+.. ...+. +.. ....+..+.+..+ .++++...++. |+++|+.+++ .... +.....+
T Consensus 318 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~ 396 (711)
T 4hvt_A 318 KAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQN 396 (711)
T ss_dssp CTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEETTEEEEEEECEETTEECCCEEECCCSTT
T ss_pred CCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCe
Confidence 46778888887631 11333 322 2235667888766 46666666654 7778876665 2333 3222124
Q ss_pred ceeEEEecCCCC-EEEEEeC---CCcEEEEEcC
Q 019405 303 SIRSIARHPTLP-IIASCGL---DSYLRFWDIK 331 (341)
Q Consensus 303 ~i~~~~~~~~~~-~l~s~~~---dg~v~iwd~~ 331 (341)
.+......+++. ++++.+. -+.+..+|+.
T Consensus 397 ~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 397 AIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp CEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 566666777765 4444332 2467777765
No 385
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=28.47 E-value=3.5e+02 Score=24.81 Aligned_cols=83 Identities=10% Similarity=0.036 Sum_probs=45.7
Q ss_pred ecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeE
Q 019405 160 CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239 (341)
Q Consensus 160 ~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i 239 (341)
..+..|..+-...+..+++.++..|.++.-.+....... ........+.....+-.+... ...+..++..+.+|..
T Consensus 551 ~~~e~i~~~~~~~~~~~l~~~T~~G~vk~~~l~~~~~~~---~~g~~ai~L~~~d~lv~~~~~-~~~~~~v~l~t~~g~~ 626 (716)
T 1zvu_A 551 PPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARN---RAGKALITLPENAHVMPPVVI-EDASDMLLAITQAGRM 626 (716)
T ss_dssp CTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCS---TTCEECBCCCTTCCBCCCEEC-CCTTCEEEEEETTSEE
T ss_pred CCCCeEEEEEEecCCceEEEEeCCceEEEecHHHhcccC---ccceEEEeeCCCCEEEEEEEe-cCCCCEEEEEeCCCeE
Confidence 334556555444467788888999999988765321110 000000111111223333331 1345578888899999
Q ss_pred EEEEcCC
Q 019405 240 RLYDTSA 246 (341)
Q Consensus 240 ~iwd~~~ 246 (341)
..|+...
T Consensus 627 lrf~~~~ 633 (716)
T 1zvu_A 627 LMFPVSD 633 (716)
T ss_dssp EEEESTT
T ss_pred EEEEHHH
Confidence 9998764
No 386
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=28.23 E-value=1.6e+02 Score=25.59 Aligned_cols=64 Identities=9% Similarity=0.036 Sum_probs=35.0
Q ss_pred eeEEEcccceeEEEEeeecccccccCCceEEEEEee-cCCceEEEEecCCCCEEEEeeCCCeEEE
Q 019405 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC-ASGTIAFSKVDISEKFSLFGGKGVEVNV 188 (341)
Q Consensus 125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~v~i 188 (341)
.++.|+.+|.+.-.-+...........-.+..+.+. .+.+|..+.++++..+|++++.++.+++
T Consensus 423 V~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 423 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 487 (495)
T ss_dssp EEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeEEEE
Confidence 566667777665433321110000011122333332 3578899999999999999988876554
No 387
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}
Probab=27.55 E-value=2.8e+02 Score=24.35 Aligned_cols=68 Identities=16% Similarity=0.196 Sum_probs=43.1
Q ss_pred CeEEEEEcC-CC-ceEEEEeCCCCEEEEECC-CC--eEEeEEeccccCce-eEEEecCCCCEEEEEeCCCcEEE
Q 019405 260 PIKAVAEEP-DS-FNIYIGNGSGDLASVDIR-TG--KLLGCFIGKCSGSI-RSIARHPTLPIIASCGLDSYLRF 327 (341)
Q Consensus 260 ~v~~~~~~~-~~-~~l~~g~~dg~i~iwd~~-~~--~~~~~~~~~~~~~i-~~~~~~~~~~~l~s~~~dg~v~i 327 (341)
..+.|+... ++ ..++.|+.+|.|.-.-+. .+ ..+..+......+| ..|.++++...|..++.++.++|
T Consensus 388 ~lT~IaVd~~~g~tV~FlGT~~G~l~Kv~~~~~~~~~~~ee~~v~~~~pi~~~l~l~~~~~~Lyv~s~~~V~~v 461 (528)
T 3ol2_B 388 QLTAVAVTMEDGHTIAFLGDSQGQLHRVYLGPGSDGHPYSTQSIQQGSAVSRDLTFDGTFEHLYVMTQSTLLKV 461 (528)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEECSSSCCSCCSEEEESSTTSCCCSCCEECTTSSEEEEECSSCEEEE
T ss_pred ceEEEEEEeecCeEEEEEECCCCeEEEEEEcCCCCeeEEeeeccCCCCcceeeEEEecCCCEEEEEeCCEEEEE
Confidence 466666543 23 456788899997654443 21 22233332225678 48999999999988888876665
No 388
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=25.30 E-value=3e+02 Score=24.96 Aligned_cols=57 Identities=11% Similarity=0.150 Sum_probs=37.0
Q ss_pred CEEEEEeCCCeEEEE-EcCCCCceeEEEEe--cCCCeEEEEEcCCC--ceEEEEeCCCCEEE
Q 019405 228 RKFVAGTNDHQVRLY-DTSAQRRPVMSFDF--RETPIKAVAEEPDS--FNIYIGNGSGDLAS 284 (341)
Q Consensus 228 ~~l~~~~~d~~i~iw-d~~~~~~~~~~~~~--~~~~v~~~~~~~~~--~~l~~g~~dg~i~i 284 (341)
..+..|+.+|.|.-. ........+..+.. ...+|..+.++++. .+|++++.++.+++
T Consensus 416 tV~flGT~~G~l~Kvv~~~~~~~~~ee~~~~~~~~pI~~l~l~~~~~~~~Lyv~s~~~V~~v 477 (663)
T 1olz_A 416 DVMFVSTDRGALHKAISLEHAVHIIEETQLFQDFEPVQTLLLSSKKGNRFVYAGSNSGVVQA 477 (663)
T ss_dssp EEEEEEETTSEEEEEEECSSSEEEEEEEECCTTCCCCCEEEECCSSSSCEEEEECSSCEEEE
T ss_pred EEEEEEcCCcEEEEEEecCCCceEEEEecccCCCCcceeeEeccCCCccEEEEEEcCeEEEE
Confidence 357778889987543 33332222222222 34689999999987 89999988876665
No 389
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=23.77 E-value=2.8e+02 Score=25.20 Aligned_cols=28 Identities=11% Similarity=0.130 Sum_probs=22.9
Q ss_pred cCCceEEEEecCCCCEEEEeeCCCeEEE
Q 019405 161 ASGTIAFSKVDISEKFSLFGGKGVEVNV 188 (341)
Q Consensus 161 ~~~~i~~~~~~~~~~~l~~~~~d~~v~i 188 (341)
.+.+|..+.++++.+.|++++.++.+++
T Consensus 468 ~~~pI~~L~ld~~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 468 EPTTISAMELSTKQQQLYIGSTAGVAQL 495 (667)
T ss_dssp SCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred CCceeeeEEEcCCCCEEEEEECCEEEEE
Confidence 3567889999999999999998876554
No 390
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=23.56 E-value=3.5e+02 Score=23.16 Aligned_cols=70 Identities=11% Similarity=0.114 Sum_probs=36.1
Q ss_pred eeEEEEecC-CCeEEEEEcC-------CCceEEEEeCCCCEEEEECCCCeE---EeEE-ec-------cccCceeEEEec
Q 019405 250 PVMSFDFRE-TPIKAVAEEP-------DSFNIYIGNGSGDLASVDIRTGKL---LGCF-IG-------KCSGSIRSIARH 310 (341)
Q Consensus 250 ~~~~~~~~~-~~v~~~~~~~-------~~~~l~~g~~dg~i~iwd~~~~~~---~~~~-~~-------~~~~~i~~~~~~ 310 (341)
|+..+..|. .++..+.|-. .+.+| .+...+.|....+..... ...+ .+ .....+..+...
T Consensus 266 P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f-~~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~~v~~~ 344 (463)
T 2wg3_C 266 SLLEFKPFSNGPLVGGFVYRGCQSERLYGSYV-FGDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSCRGYFSGHILGFGED 344 (463)
T ss_dssp CCEECCC----CEEEEEECCCSSCTTTTTCEE-EEETTSCEEEEEC-----CCEEEEECEEETTSSCSCCCSEEEEEEEC
T ss_pred CeEEeeCCCCccccceEEEeCCCChhhcceEE-EecCCCcEEEEEeCCCCceeeEEEeecCCcccccccccCcceEEEEC
Confidence 455444331 4667777743 23344 455557776666543321 1111 11 113578999999
Q ss_pred CCCCEEEEEe
Q 019405 311 PTLPIIASCG 320 (341)
Q Consensus 311 ~~~~~l~s~~ 320 (341)
|+|.++++..
T Consensus 345 pdG~Lyv~~~ 354 (463)
T 2wg3_C 345 ELGEVYILSS 354 (463)
T ss_dssp TTCCEEEEEE
T ss_pred CCCCEEEEec
Confidence 9999777665
No 391
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=23.51 E-value=1.6e+02 Score=19.20 Aligned_cols=15 Identities=0% Similarity=0.040 Sum_probs=8.1
Q ss_pred EEEEEeCCCcEEEEE
Q 019405 315 IIASCGLDSYLRFWD 329 (341)
Q Consensus 315 ~l~s~~~dg~v~iwd 329 (341)
+.+.--.||.+.+++
T Consensus 91 ~~~~L~~dGnlvly~ 105 (113)
T 3mez_B 91 YVLILQINGQAVVYG 105 (113)
T ss_dssp CEEEECTTSCEEEEC
T ss_pred EEEEEcCCceEEEec
Confidence 444455566666654
No 392
>1ic9_A TH10AOX; three stranded antiparallel beta-sheet mini-protein motif de novo protein design; HET: DPR DAL; NMR {Synthetic} SCOP: k.26.1.1 PDB: 1ico_A* 1icl_A*
Probab=22.53 E-value=43 Score=15.02 Aligned_cols=11 Identities=55% Similarity=1.301 Sum_probs=7.6
Q ss_pred eeecCCCCCce
Q 019405 6 TLECPGCPPLR 16 (341)
Q Consensus 6 ~~~~~~~~~~~ 16 (341)
++..||||.++
T Consensus 11 tfrgpgcptlk 21 (29)
T 1ic9_A 11 TFRGPGCPTLK 21 (29)
T ss_dssp EEECSCCCCCC
T ss_pred eecCCCCCccc
Confidence 46778888754
No 393
>1sr4_A CDT A, cytolethal distending toxin subunit A; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: b.42.2.1 PDB: 2f2f_A
Probab=22.37 E-value=2.5e+02 Score=20.97 Aligned_cols=94 Identities=3% Similarity=-0.113 Sum_probs=54.5
Q ss_pred CCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEE-EeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCC-
Q 019405 236 DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYI-GNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL- 313 (341)
Q Consensus 236 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~- 313 (341)
...+.+|.+..+.- +-.+..- .+..|.....+-+. ...+|.|++-+..++.++..... .+.........
T Consensus 68 g~~lt~Wa~~~~nw-~wgY~~~----ds~~FG~~r~W~i~~~~p~G~VqFvN~~TgtCL~ay~n----Gvv~~~C~~s~~ 138 (206)
T 1sr4_A 68 GALLTVWALAKRNW-LWAYPNI----YSQDFGNIRNWKMEPGKHREYFRFVNQSLGTCVEAYGN----GLIHDICSLDKL 138 (206)
T ss_dssp SEEEEECSCSTTCB-EEEEEGG----GCGGGGGGGCEEEEECSSTTCEEEEETTTCCEEEEETT----EEEEECCCTTCG
T ss_pred CCEEEEEecCCCcc-eeeeccc----ccCCcCCcceeEEEeecCCCEEEEEECCCCceeeeccC----CeEEecCCCCCc
Confidence 34567888876442 3333321 12223322234444 56788999999999998877532 23222222221
Q ss_pred --CEEEEEeCCCcEEEEEcCCCceeee
Q 019405 314 --PIIASCGLDSYLRFWDIKTRQLLSA 338 (341)
Q Consensus 314 --~~l~s~~~dg~v~iwd~~~~~~~~~ 338 (341)
.+=+.-..+|.|.|=++.+++|+..
T Consensus 139 ~Q~wsiiPttnGAVQIKnvatg~CL~t 165 (206)
T 1sr4_A 139 AQEFELLPTDSGAVVIKSVSQGRCVTY 165 (206)
T ss_dssp GGCEEEEEBTTSCEEEEETTTCCEEEE
T ss_pred ccEEEEecCCCccEEEEECCCCccCCc
Confidence 1333344578888889999999986
No 394
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=22.35 E-value=3.5e+02 Score=24.15 Aligned_cols=57 Identities=7% Similarity=0.004 Sum_probs=36.9
Q ss_pred ceEEEEeCCCCEEEEECCC-C-----eEEeEEec-cccCceeEEEecCCCCEEEEEeCCCcEEE
Q 019405 271 FNIYIGNGSGDLASVDIRT-G-----KLLGCFIG-KCSGSIRSIARHPTLPIIASCGLDSYLRF 327 (341)
Q Consensus 271 ~~l~~g~~dg~i~iwd~~~-~-----~~~~~~~~-~~~~~i~~~~~~~~~~~l~s~~~dg~v~i 327 (341)
..++.|+.+|.|.-.-... + -.+..+.. ....+|..|.++++...|..++.++.+++
T Consensus 381 tVlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~qV 444 (590)
T 3nvq_A 381 HVLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVSQV 444 (590)
T ss_dssp EEEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTTEEEEECSSEEEEE
T ss_pred EEEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCCCEEEEEecceEEEc
Confidence 4677888999876443322 2 12223321 12568999999999999988888765554
No 395
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}
Probab=21.64 E-value=4.1e+02 Score=23.32 Aligned_cols=59 Identities=5% Similarity=-0.039 Sum_probs=36.3
Q ss_pred eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCce-EEEEecCCCCEEEEeeCCCeEEE
Q 019405 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTI-AFSKVDISEKFSLFGGKGVEVNV 188 (341)
Q Consensus 125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i-~~~~~~~~~~~l~~~~~d~~v~i 188 (341)
.++.|+.+|.+.-.-+.... ....+..+.+..+.+| ..+.++++...|+.++.++.+++
T Consensus 402 V~FlGT~~G~l~Kv~~~~~~-----~~~~~ee~~v~~~~pi~~~l~l~~~~~~Lyv~s~~~V~~v 461 (528)
T 3ol2_B 402 IAFLGDSQGQLHRVYLGPGS-----DGHPYSTQSIQQGSAVSRDLTFDGTFEHLYVMTQSTLLKV 461 (528)
T ss_dssp EEEEEETTSEEEEEECSSSC-----CSCCSEEEESSTTSCCCSCCEECTTSSEEEEECSSCEEEE
T ss_pred EEEEECCCCeEEEEEEcCCC-----CeeEEeeeccCCCCcceeeEEEecCCCEEEEEeCCEEEEE
Confidence 56677777777644332111 1112333444455677 48889998899998888876664
No 396
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=20.23 E-value=4.1e+02 Score=24.19 Aligned_cols=57 Identities=18% Similarity=0.195 Sum_probs=36.1
Q ss_pred CEEEEEeCCCeEE-EEEcCCCC------ceeEEEE--ecCCCeEEEEEcCCCceEEEEeCCCCEEE
Q 019405 228 RKFVAGTNDHQVR-LYDTSAQR------RPVMSFD--FRETPIKAVAEEPDSFNIYIGNGSGDLAS 284 (341)
Q Consensus 228 ~~l~~~~~d~~i~-iwd~~~~~------~~~~~~~--~~~~~v~~~~~~~~~~~l~~g~~dg~i~i 284 (341)
..+..|+.+|.|. +....... ..+..+. ....+|..|.++++...|++++.++.+++
T Consensus 430 tVlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 430 DVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 495 (667)
T ss_dssp EEEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEEEEE
Confidence 3566788899875 33222111 1122222 24568999999999999999998876665
Done!