BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019406
         (341 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4ILK|A Chain A, Crystal Structure Of Short Chain Alcohol Dehydrogenase
           (rspb) From E. Coli Cft073 (efi Target Efi-506413)
           Complexed With Cofactor Nadh
 pdb|4ILK|B Chain B, Crystal Structure Of Short Chain Alcohol Dehydrogenase
           (rspb) From E. Coli Cft073 (efi Target Efi-506413)
           Complexed With Cofactor Nadh
          Length = 359

 Score = 32.0 bits (71), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 11/75 (14%)

Query: 152 LQPKENNWRMAEA-----GTMLEE------VTEVGEPIASDNMLVRYHPPIDETPKPVLK 200
           + P +N W++ EA       M+E       VT  G+P  +D +LV    PI  T   VLK
Sbjct: 142 VVPAKNAWKIPEAVADQYAVMIEPFTIAANVTGHGQPTENDTVLVYGAGPIGLTIVQVLK 201

Query: 201 PVTDSGNQMASDTSD 215
            V +  N + +D  D
Sbjct: 202 GVYNVKNVIVADRID 216


>pdb|2IEW|A Chain A, Crystal Structure Of Inositol Phosphate Multikinase Ipk2
           From S. Cerevisiae
 pdb|2IEW|B Chain B, Crystal Structure Of Inositol Phosphate Multikinase Ipk2
           From S. Cerevisiae
 pdb|2IF8|A Chain A, Crystal Structure Of Inositol Phosphate Multikinase Ipk2
           In Complex With Adp And Mn2+ From S. Cerevisiae
 pdb|2IF8|B Chain B, Crystal Structure Of Inositol Phosphate Multikinase Ipk2
           In Complex With Adp And Mn2+ From S. Cerevisiae
          Length = 363

 Score = 28.9 bits (63), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 18/84 (21%), Positives = 39/84 (46%), Gaps = 1/84 (1%)

Query: 62  EQRKSLQQSEKLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLR 121
           + + SL++ E++    E     +L   +  +K  KN      L L  Y+E AD+  + + 
Sbjct: 140 DSKASLEKRERMKRVSETTTSGSLGFRICGMKIQKNPSVLNQLSLEYYEEEADSDYIFI- 198

Query: 122 DRVQGMEKSQQQMLSFLVMAMQNP 145
           +++ G  ++ Q +   + +   NP
Sbjct: 199 NKLYGRSRTDQNVSDAIELYFNNP 222


>pdb|4EI1|A Chain A, Crystal Structure Of Human Argonaute2
 pdb|4EI3|A Chain A, Crystal Structure Of Human Argonaute2
          Length = 859

 Score = 28.5 bits (62), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 8/108 (7%)

Query: 108 QYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQNPSFLVQLLQPKENNWRMAEAGTM 167
           Q+Q+   ++LL +R+    +EK  Q  ++F+V+  ++ + L       + N R+ ++G +
Sbjct: 675 QFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFC----TDKNERVGKSGNI 730

Query: 168 LEEV---TEVGEPIASDNMLVRYHPPIDETPKPVLKPVTDSGNQMASD 212
                  T++  P   D  L   H  I  T +P    V    N+ +SD
Sbjct: 731 PAGTTVDTKITHPTEFDFYLCS-HAGIQGTSRPSHYHVLWDDNRFSSD 777


>pdb|4F3T|A Chain A, Human Argonaute-2 - Mir-20a Complex
          Length = 861

 Score = 28.5 bits (62), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 8/108 (7%)

Query: 108 QYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQNPSFLVQLLQPKENNWRMAEAGTM 167
           Q+Q+   ++LL +R+    +EK  Q  ++F+V+  ++ + L       + N R+ ++G +
Sbjct: 677 QFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFC----TDKNERVGKSGNI 732

Query: 168 LEEV---TEVGEPIASDNMLVRYHPPIDETPKPVLKPVTDSGNQMASD 212
                  T++  P   D  L   H  I  T +P    V    N+ +SD
Sbjct: 733 PAGTTVDTKITHPTEFDFYLCS-HAGIQGTSRPSHYHVLWDDNRFSSD 779


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.130    0.368 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,008,764
Number of Sequences: 62578
Number of extensions: 353574
Number of successful extensions: 644
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 641
Number of HSP's gapped (non-prelim): 9
length of query: 341
length of database: 14,973,337
effective HSP length: 100
effective length of query: 241
effective length of database: 8,715,537
effective search space: 2100444417
effective search space used: 2100444417
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)