Query 019406
Match_columns 341
No_of_seqs 190 out of 599
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 09:12:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019406.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019406hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0627 Heat shock transcripti 100.0 4.5E-35 9.7E-40 277.9 10.2 176 3-193 53-236 (304)
2 COG5169 HSF1 Heat shock transc 99.7 3.5E-19 7.7E-24 170.7 2.0 124 3-142 51-187 (282)
3 PF00447 HSF_DNA-bind: HSF-typ 99.7 2.7E-19 5.9E-24 146.3 0.7 51 3-57 40-102 (103)
4 smart00415 HSF heat shock fact 99.7 5.1E-19 1.1E-23 146.1 1.9 49 3-55 43-105 (105)
5 PF03310 Cauli_DNA-bind: Cauli 92.3 0.32 7E-06 42.5 5.6 62 97-161 2-63 (121)
6 COG3074 Uncharacterized protei 90.5 2 4.3E-05 34.8 7.9 54 84-140 22-75 (79)
7 PF12325 TMF_TATA_bd: TATA ele 90.2 2.9 6.2E-05 36.3 9.3 60 80-139 30-92 (120)
8 PRK15422 septal ring assembly 89.9 1.6 3.4E-05 35.7 7.0 43 84-126 22-71 (79)
9 PF06005 DUF904: Protein of un 89.7 3.2 6.9E-05 33.0 8.5 45 83-127 21-65 (72)
10 PF04340 DUF484: Protein of un 89.3 1.7 3.7E-05 40.2 7.8 76 36-145 16-91 (225)
11 PF11932 DUF3450: Protein of u 85.4 7.3 0.00016 36.7 9.7 63 81-143 50-112 (251)
12 PF10473 CENP-F_leu_zip: Leuci 85.1 8.9 0.00019 34.2 9.5 61 83-143 55-115 (140)
13 PF12329 TMF_DNA_bd: TATA elem 83.6 12 0.00026 29.7 8.8 60 81-140 13-72 (74)
14 PF02183 HALZ: Homeobox associ 83.1 5.5 0.00012 29.1 6.1 41 85-125 3-43 (45)
15 TIGR02449 conserved hypothetic 82.5 6.8 0.00015 30.9 6.8 41 85-125 12-52 (65)
16 TIGR02894 DNA_bind_RsfA transc 80.8 12 0.00026 34.4 8.7 54 89-142 99-152 (161)
17 PF10168 Nup88: Nuclear pore c 77.1 9.8 0.00021 41.8 8.3 64 82-145 560-623 (717)
18 PF06005 DUF904: Protein of un 75.0 40 0.00088 26.8 9.9 53 84-136 15-67 (72)
19 PF04728 LPP: Lipoprotein leuc 75.0 23 0.0005 27.3 7.5 45 83-127 6-50 (56)
20 PRK10963 hypothetical protein; 73.9 18 0.0004 33.8 8.2 17 37-53 14-30 (223)
21 PF04111 APG6: Autophagy prote 73.2 24 0.00052 34.9 9.3 53 81-133 44-96 (314)
22 PF06156 DUF972: Protein of un 70.8 22 0.00048 30.3 7.3 46 84-129 12-57 (107)
23 PF05377 FlaC_arch: Flagella a 68.1 37 0.0008 26.1 7.2 38 98-142 11-48 (55)
24 PF10779 XhlA: Haemolysin XhlA 67.9 55 0.0012 25.4 9.5 57 84-140 3-59 (71)
25 PF04880 NUDE_C: NUDE protein, 67.8 3.2 7E-05 38.0 1.8 41 84-129 18-58 (166)
26 PRK13169 DNA replication intia 66.7 29 0.00064 29.8 7.2 44 84-127 12-55 (110)
27 COG1579 Zn-ribbon protein, pos 66.1 28 0.0006 33.7 7.7 54 79-132 88-141 (239)
28 smart00338 BRLZ basic region l 63.5 24 0.00053 26.5 5.6 35 83-117 29-63 (65)
29 TIGR03752 conj_TIGR03752 integ 63.3 47 0.001 35.2 9.3 39 82-120 68-106 (472)
30 PF04156 IncA: IncA protein; 62.8 97 0.0021 27.6 10.2 62 81-142 89-150 (191)
31 PF02403 Seryl_tRNA_N: Seryl-t 62.0 69 0.0015 26.1 8.4 55 80-134 36-93 (108)
32 PF07200 Mod_r: Modifier of ru 62.0 62 0.0013 27.9 8.6 55 81-135 35-89 (150)
33 PF02183 HALZ: Homeobox associ 61.8 29 0.00064 25.3 5.5 36 81-116 6-41 (45)
34 PRK15396 murein lipoprotein; P 60.9 50 0.0011 26.9 7.2 45 83-127 28-72 (78)
35 KOG4460 Nuclear pore complex, 60.5 60 0.0013 35.4 9.6 62 84-145 585-646 (741)
36 PF08826 DMPK_coil: DMPK coile 59.9 81 0.0017 24.6 7.9 36 95-130 12-47 (61)
37 KOG4196 bZIP transcription fac 59.1 33 0.00073 30.7 6.4 43 90-139 77-119 (135)
38 KOG3863 bZIP transcription fac 59.1 27 0.00058 38.0 6.8 66 39-116 479-547 (604)
39 KOG2129 Uncharacterized conser 58.8 1.1E+02 0.0023 32.5 10.8 110 88-201 247-376 (552)
40 PF12325 TMF_TATA_bd: TATA ele 58.0 1.3E+02 0.0028 26.2 10.1 53 82-134 18-70 (120)
41 PRK11637 AmiB activator; Provi 57.8 1.1E+02 0.0025 30.9 10.9 58 83-140 78-135 (428)
42 PF00170 bZIP_1: bZIP transcri 57.4 45 0.00098 25.0 6.1 33 84-116 30-62 (64)
43 PRK09039 hypothetical protein; 56.9 86 0.0019 31.4 9.7 42 93-134 136-177 (343)
44 PF00038 Filament: Intermediat 56.7 87 0.0019 29.9 9.4 56 83-138 212-267 (312)
45 PF10473 CENP-F_leu_zip: Leuci 55.6 1.4E+02 0.0029 26.8 9.7 39 87-125 52-90 (140)
46 PF11932 DUF3450: Protein of u 55.5 1.1E+02 0.0024 28.8 9.7 51 85-135 47-97 (251)
47 PRK00888 ftsB cell division pr 54.3 35 0.00076 28.7 5.5 35 88-122 28-62 (105)
48 KOG4005 Transcription factor X 54.3 76 0.0017 31.3 8.4 54 84-137 94-152 (292)
49 PF10224 DUF2205: Predicted co 54.1 1.2E+02 0.0026 24.8 9.0 41 84-124 20-60 (80)
50 COG3159 Uncharacterized protei 53.7 55 0.0012 31.5 7.3 102 34-155 12-119 (218)
51 PRK06800 fliH flagellar assemb 53.7 74 0.0016 30.4 8.0 34 84-117 35-68 (228)
52 PF11559 ADIP: Afadin- and alp 53.6 1.4E+02 0.0031 25.8 9.5 47 85-131 57-103 (151)
53 COG1579 Zn-ribbon protein, pos 53.4 63 0.0014 31.3 7.8 41 87-127 38-78 (239)
54 PF09726 Macoilin: Transmembra 52.8 60 0.0013 35.8 8.4 53 82-134 420-479 (697)
55 PRK10884 SH3 domain-containing 52.5 53 0.0012 30.9 7.0 39 86-124 131-169 (206)
56 PF07106 TBPIP: Tat binding pr 52.0 82 0.0018 27.9 7.8 59 82-140 74-134 (169)
57 PF07407 Seadorna_VP6: Seadorn 50.3 99 0.0021 31.9 8.8 28 81-108 33-60 (420)
58 PF08317 Spc7: Spc7 kinetochor 50.0 1.1E+02 0.0025 30.1 9.2 48 88-135 210-257 (325)
59 TIGR00219 mreC rod shape-deter 48.4 73 0.0016 31.1 7.5 40 86-125 65-104 (283)
60 PRK09973 putative outer membra 48.3 91 0.002 25.9 6.9 47 81-127 25-71 (85)
61 PF13747 DUF4164: Domain of un 48.1 1.4E+02 0.0031 24.4 8.1 45 83-127 35-79 (89)
62 PF09726 Macoilin: Transmembra 48.0 91 0.002 34.5 8.9 58 86-143 417-481 (697)
63 TIGR02449 conserved hypothetic 47.4 1.4E+02 0.003 23.6 9.6 47 83-129 17-63 (65)
64 PF08581 Tup_N: Tup N-terminal 47.2 1.5E+02 0.0034 24.0 8.7 46 89-134 6-58 (79)
65 TIGR00414 serS seryl-tRNA synt 46.4 1.3E+02 0.0028 30.9 9.2 59 80-138 37-99 (418)
66 PF07106 TBPIP: Tat binding pr 46.2 1.4E+02 0.0031 26.3 8.5 57 80-136 79-137 (169)
67 PF13874 Nup54: Nucleoporin co 46.1 1.4E+02 0.003 26.0 8.2 53 87-139 44-96 (141)
68 PF12329 TMF_DNA_bd: TATA elem 46.0 68 0.0015 25.4 5.7 44 84-127 30-73 (74)
69 PRK10803 tol-pal system protei 44.8 1.2E+02 0.0027 29.1 8.3 43 98-140 58-100 (263)
70 PF05377 FlaC_arch: Flagella a 44.7 1.1E+02 0.0023 23.6 6.3 28 83-110 10-37 (55)
71 PRK15396 murein lipoprotein; P 44.5 1.7E+02 0.0038 23.8 8.0 50 87-136 25-74 (78)
72 PRK11637 AmiB activator; Provi 44.5 1.7E+02 0.0038 29.6 9.7 35 84-118 86-120 (428)
73 PF03904 DUF334: Domain of unk 44.4 2.3E+02 0.0051 27.5 10.0 40 87-126 43-82 (230)
74 KOG0977 Nuclear envelope prote 44.2 98 0.0021 33.5 8.1 38 84-121 152-189 (546)
75 PF10211 Ax_dynein_light: Axon 44.0 1.8E+02 0.004 26.7 9.0 33 83-115 123-155 (189)
76 PRK05431 seryl-tRNA synthetase 43.8 1.3E+02 0.0028 31.0 8.7 59 80-138 35-96 (425)
77 PF04201 TPD52: Tumour protein 43.8 77 0.0017 29.2 6.4 39 86-124 28-66 (162)
78 PRK00295 hypothetical protein; 43.8 1.5E+02 0.0033 23.1 7.3 44 84-127 9-52 (68)
79 COG4942 Membrane-bound metallo 43.6 1.7E+02 0.0036 30.8 9.5 48 81-128 60-107 (420)
80 PF10805 DUF2730: Protein of u 43.1 1.9E+02 0.0041 24.2 8.2 41 93-133 48-90 (106)
81 KOG0977 Nuclear envelope prote 43.0 1.3E+02 0.0028 32.6 8.8 70 81-150 163-245 (546)
82 PF06156 DUF972: Protein of un 42.5 94 0.002 26.5 6.3 38 84-121 19-56 (107)
83 PRK10803 tol-pal system protei 42.4 1.2E+02 0.0027 29.1 7.9 54 83-136 36-89 (263)
84 PRK09039 hypothetical protein; 41.3 2E+02 0.0043 28.8 9.5 46 85-130 121-166 (343)
85 PF07407 Seadorna_VP6: Seadorn 41.2 1.2E+02 0.0026 31.2 7.9 55 86-140 31-87 (420)
86 PF04977 DivIC: Septum formati 41.2 90 0.0019 23.5 5.6 33 88-120 18-50 (80)
87 PF10224 DUF2205: Predicted co 41.1 1.8E+02 0.0038 23.9 7.4 56 88-143 9-65 (80)
88 TIGR02894 DNA_bind_RsfA transc 40.3 1.3E+02 0.0028 27.7 7.3 36 84-119 108-143 (161)
89 smart00787 Spc7 Spc7 kinetocho 39.9 2E+02 0.0044 28.7 9.2 53 88-140 205-257 (312)
90 PF08614 ATG16: Autophagy prot 39.9 2.2E+02 0.0047 25.9 8.8 50 85-134 121-177 (194)
91 PRK13169 DNA replication intia 39.3 1.1E+02 0.0024 26.4 6.3 39 82-120 17-55 (110)
92 PRK10884 SH3 domain-containing 38.9 2E+02 0.0044 27.0 8.6 43 85-127 123-165 (206)
93 PRK00736 hypothetical protein; 38.8 1.8E+02 0.0039 22.7 7.0 43 84-126 9-51 (68)
94 PRK04406 hypothetical protein; 38.8 1.6E+02 0.0035 23.5 6.8 43 84-126 15-57 (75)
95 PF04102 SlyX: SlyX; InterPro 38.8 1.4E+02 0.0029 23.2 6.3 44 84-127 8-51 (69)
96 PRK00846 hypothetical protein; 38.4 1.8E+02 0.0039 23.7 7.0 44 85-128 18-61 (77)
97 PLN02678 seryl-tRNA synthetase 38.4 1.7E+02 0.0038 30.6 8.8 59 81-139 41-102 (448)
98 PF12718 Tropomyosin_1: Tropom 38.3 2.1E+02 0.0046 25.2 8.2 39 87-125 21-59 (143)
99 COG1382 GimC Prefoldin, chaper 38.3 1.2E+02 0.0026 26.6 6.5 40 86-125 69-108 (119)
100 PRK14127 cell division protein 38.0 1E+02 0.0022 26.6 5.9 39 88-126 31-69 (109)
101 PF08317 Spc7: Spc7 kinetochor 37.9 2.7E+02 0.0059 27.4 9.7 51 83-133 212-262 (325)
102 PRK14160 heat shock protein Gr 37.8 3.4E+02 0.0074 25.9 9.9 45 82-126 56-100 (211)
103 TIGR02132 phaR_Bmeg polyhydrox 37.5 1.8E+02 0.0038 27.5 7.8 57 84-140 83-139 (189)
104 PF08826 DMPK_coil: DMPK coile 37.4 2E+02 0.0043 22.4 8.7 47 81-127 12-58 (61)
105 PRK04325 hypothetical protein; 37.3 1.8E+02 0.004 23.0 6.9 43 84-126 13-55 (74)
106 PF02994 Transposase_22: L1 tr 37.3 36 0.00079 34.4 3.6 54 84-137 109-166 (370)
107 PF06216 RTBV_P46: Rice tungro 37.2 1.1E+02 0.0023 30.7 6.6 44 84-127 68-111 (389)
108 PF07716 bZIP_2: Basic region 37.2 74 0.0016 23.3 4.4 24 84-107 29-52 (54)
109 PF11414 Suppressor_APC: Adeno 36.7 1.3E+02 0.0029 24.6 6.2 44 84-127 4-47 (84)
110 PHA02562 46 endonuclease subun 36.6 2.1E+02 0.0046 29.4 9.1 66 87-152 351-422 (562)
111 PRK02793 phi X174 lysis protei 36.3 2E+02 0.0043 22.7 6.9 43 84-126 12-54 (72)
112 PLN02320 seryl-tRNA synthetase 36.3 1.9E+02 0.0041 30.9 8.8 87 39-136 69-158 (502)
113 PRK02119 hypothetical protein; 36.0 2E+02 0.0043 22.8 6.9 42 85-126 14-55 (73)
114 PF08172 CASP_C: CASP C termin 35.5 1E+02 0.0022 29.8 6.1 37 85-121 84-120 (248)
115 PF15294 Leu_zip: Leucine zipp 35.1 2E+02 0.0043 28.6 8.2 46 84-129 129-174 (278)
116 PF12718 Tropomyosin_1: Tropom 35.0 2.4E+02 0.0053 24.9 8.0 42 83-124 31-72 (143)
117 PF14282 FlxA: FlxA-like prote 35.0 2.4E+02 0.0052 23.6 7.7 24 85-108 17-40 (106)
118 PF11559 ADIP: Afadin- and alp 34.3 3.1E+02 0.0067 23.7 9.9 47 83-129 62-108 (151)
119 PF04156 IncA: IncA protein; 33.2 3.5E+02 0.0075 24.0 9.6 20 88-107 131-150 (191)
120 PF05524 PEP-utilisers_N: PEP- 32.9 78 0.0017 26.3 4.4 59 84-156 32-91 (123)
121 PRK13182 racA polar chromosome 32.7 2.7E+02 0.0058 25.6 8.2 22 38-59 35-56 (175)
122 PF08614 ATG16: Autophagy prot 32.6 3.8E+02 0.0083 24.3 10.1 44 85-128 100-143 (194)
123 cd00632 Prefoldin_beta Prefold 32.5 2E+02 0.0044 23.6 6.7 44 84-127 60-103 (105)
124 PRK03947 prefoldin subunit alp 32.1 2.5E+02 0.0053 24.0 7.5 47 84-130 91-137 (140)
125 PF04325 DUF465: Protein of un 32.1 80 0.0017 22.9 3.8 24 86-109 26-49 (49)
126 COG1730 GIM5 Predicted prefold 32.1 2.9E+02 0.0063 24.9 8.1 47 84-130 91-137 (145)
127 PF07200 Mod_r: Modifier of ru 31.7 3.3E+02 0.0073 23.4 8.4 36 86-121 54-89 (150)
128 COG1345 FliD Flagellar capping 31.3 2.3E+02 0.0049 30.1 8.4 56 83-141 425-480 (483)
129 KOG4360 Uncharacterized coiled 31.2 2E+02 0.0043 31.3 7.9 52 84-135 223-274 (596)
130 PRK06798 fliD flagellar cappin 30.8 2.2E+02 0.0048 29.6 8.1 8 12-19 270-277 (440)
131 PF10186 Atg14: UV radiation r 30.8 4.4E+02 0.0095 24.4 9.8 31 87-117 63-93 (302)
132 COG3074 Uncharacterized protei 30.7 3E+02 0.0065 22.5 8.1 38 94-131 18-55 (79)
133 PF10226 DUF2216: Uncharacteri 30.7 3.8E+02 0.0081 25.6 8.8 26 83-108 51-76 (195)
134 PF13870 DUF4201: Domain of un 30.6 3.9E+02 0.0084 23.8 10.1 66 76-141 38-103 (177)
135 COG5481 Uncharacterized conser 30.5 1.7E+02 0.0037 23.2 5.5 28 95-122 5-32 (67)
136 PRK10920 putative uroporphyrin 30.5 3.7E+02 0.0081 27.8 9.6 47 88-134 61-111 (390)
137 PF02344 Myc-LZ: Myc leucine z 30.5 1.2E+02 0.0027 21.0 4.1 26 83-108 4-29 (32)
138 PRK13729 conjugal transfer pil 30.2 1.4E+02 0.0031 31.8 6.6 43 96-138 78-120 (475)
139 KOG4010 Coiled-coil protein TP 29.7 1.7E+02 0.0037 27.9 6.4 37 88-124 45-81 (208)
140 PF15035 Rootletin: Ciliary ro 29.6 3.1E+02 0.0067 25.3 8.1 42 85-126 86-127 (182)
141 PF07888 CALCOCO1: Calcium bin 29.6 3.5E+02 0.0075 29.4 9.4 32 304-335 428-459 (546)
142 KOG2196 Nuclear porin [Nuclear 29.4 1.8E+02 0.0039 28.6 6.7 44 83-126 116-159 (254)
143 PF10018 Med4: Vitamin-D-recep 29.1 4E+02 0.0087 24.2 8.7 48 95-143 10-57 (188)
144 PF07334 IFP_35_N: Interferon- 29.0 1.1E+02 0.0024 24.9 4.5 24 85-108 5-28 (76)
145 PF11853 DUF3373: Protein of u 28.6 55 0.0012 34.8 3.3 30 85-115 23-52 (489)
146 PF05064 Nsp1_C: Nsp1-like C-t 28.5 32 0.0007 29.2 1.4 41 84-124 61-101 (116)
147 COG1730 GIM5 Predicted prefold 28.3 2.2E+02 0.0047 25.7 6.6 47 81-127 95-141 (145)
148 TIGR03752 conj_TIGR03752 integ 28.3 2.2E+02 0.0047 30.4 7.6 43 83-125 62-104 (472)
149 PF04111 APG6: Autophagy prote 28.1 5.6E+02 0.012 25.4 10.1 27 84-110 61-87 (314)
150 PF01920 Prefoldin_2: Prefoldi 27.8 2.5E+02 0.0053 22.2 6.4 41 85-125 60-100 (106)
151 PF07888 CALCOCO1: Calcium bin 27.8 2.7E+02 0.0059 30.2 8.3 47 88-134 151-197 (546)
152 PF04728 LPP: Lipoprotein leuc 27.8 2.9E+02 0.0063 21.4 8.6 48 88-135 4-51 (56)
153 KOG2185 Predicted RNA-processi 27.7 2.4E+02 0.0051 30.0 7.6 54 81-138 414-467 (486)
154 KOG2751 Beclin-like protein [S 27.6 2.3E+02 0.005 30.0 7.5 49 81-129 177-225 (447)
155 PF01519 DUF16: Protein of unk 27.5 2.8E+02 0.0061 23.9 6.8 44 85-128 58-101 (102)
156 PF13094 CENP-Q: CENP-Q, a CEN 27.4 4.2E+02 0.0092 23.2 8.7 44 84-127 31-74 (160)
157 PF01166 TSC22: TSC-22/dip/bun 27.4 92 0.002 24.4 3.5 31 84-114 11-41 (59)
158 PF00170 bZIP_1: bZIP transcri 27.4 2.7E+02 0.0058 20.8 6.9 33 88-120 27-59 (64)
159 PF13874 Nup54: Nucleoporin co 27.1 3.9E+02 0.0084 23.3 7.9 43 84-126 55-97 (141)
160 PF15188 CCDC-167: Coiled-coil 27.0 95 0.0021 25.7 3.8 32 81-112 37-68 (85)
161 PRK13922 rod shape-determining 27.0 1.5E+02 0.0033 28.1 5.8 27 87-113 69-95 (276)
162 PRK14143 heat shock protein Gr 26.9 5E+02 0.011 25.1 9.2 40 86-125 66-105 (238)
163 PRK13922 rod shape-determining 26.7 2.3E+02 0.0049 26.9 6.9 20 85-104 74-93 (276)
164 KOG4196 bZIP transcription fac 26.7 3.7E+02 0.0081 24.2 7.6 24 101-124 47-70 (135)
165 PF14817 HAUS5: HAUS augmin-li 26.6 4.4E+02 0.0096 29.1 9.8 44 96-139 81-124 (632)
166 PF12308 Noelin-1: Neurogenesi 26.6 3.2E+02 0.007 23.5 6.9 54 83-136 43-96 (101)
167 PF08781 DP: Transcription fac 26.4 3.3E+02 0.0071 24.6 7.4 26 88-113 2-27 (142)
168 PRK10698 phage shock protein P 26.2 3.8E+02 0.0082 25.2 8.2 43 85-127 104-146 (222)
169 PF09787 Golgin_A5: Golgin sub 26.2 2.7E+02 0.0058 29.3 7.9 40 87-126 274-313 (511)
170 PF00038 Filament: Intermediat 26.1 5.6E+02 0.012 24.4 9.5 46 88-133 210-255 (312)
171 COG2433 Uncharacterized conser 26.1 2.8E+02 0.006 30.7 8.0 43 83-125 425-467 (652)
172 PF07798 DUF1640: Protein of u 26.1 3.9E+02 0.0084 24.0 7.9 15 40-54 15-29 (177)
173 smart00338 BRLZ basic region l 25.8 2.9E+02 0.0062 20.7 6.3 28 89-116 28-55 (65)
174 PF10359 Fmp27_WPPW: RNA pol I 25.5 3.1E+02 0.0068 28.6 8.2 35 2-40 114-149 (475)
175 PF14817 HAUS5: HAUS augmin-li 25.3 3E+02 0.0066 30.3 8.3 61 94-154 358-418 (632)
176 PF10805 DUF2730: Protein of u 25.3 4.1E+02 0.0088 22.2 7.6 39 83-128 52-92 (106)
177 COG2433 Uncharacterized conser 25.0 5.3E+02 0.012 28.6 9.9 49 81-129 437-488 (652)
178 KOG1103 Predicted coiled-coil 24.9 2.8E+02 0.006 29.1 7.4 50 84-133 242-291 (561)
179 PF05149 Flagellar_rod: Parafl 24.8 4.3E+02 0.0093 26.4 8.6 31 97-127 48-78 (289)
180 KOG0996 Structural maintenance 24.7 3.6E+02 0.0079 32.1 8.9 45 83-127 545-589 (1293)
181 PF10186 Atg14: UV radiation r 24.6 5.1E+02 0.011 24.0 8.7 36 90-125 59-94 (302)
182 PF15456 Uds1: Up-regulated Du 24.5 3.4E+02 0.0074 23.7 7.0 24 87-110 22-45 (124)
183 KOG0804 Cytoplasmic Zn-finger 24.4 3E+02 0.0064 29.5 7.6 48 88-135 348-395 (493)
184 PRK14153 heat shock protein Gr 24.4 5.2E+02 0.011 24.3 8.6 38 88-125 34-71 (194)
185 PF04859 DUF641: Plant protein 24.4 1.8E+02 0.0039 25.8 5.3 41 84-124 91-131 (131)
186 PF07889 DUF1664: Protein of u 24.3 5E+02 0.011 22.9 8.1 43 89-131 77-119 (126)
187 PF05278 PEARLI-4: Arabidopsis 24.0 4.8E+02 0.01 25.9 8.7 44 88-131 201-244 (269)
188 PRK13729 conjugal transfer pil 24.0 3.8E+02 0.0082 28.7 8.4 34 85-118 81-114 (475)
189 COG3883 Uncharacterized protei 23.8 5E+02 0.011 25.8 8.7 55 85-143 57-111 (265)
190 PF11382 DUF3186: Protein of u 23.7 2.5E+02 0.0054 27.7 6.8 31 83-113 35-65 (308)
191 PRK05892 nucleoside diphosphat 23.6 3E+02 0.0066 24.7 6.7 64 77-140 8-72 (158)
192 PF09755 DUF2046: Uncharacteri 23.4 7.6E+02 0.016 25.1 10.0 40 83-122 23-62 (310)
193 KOG0727 26S proteasome regulat 23.2 7.8E+02 0.017 25.2 10.0 119 84-203 29-148 (408)
194 TIGR02338 gimC_beta prefoldin, 23.2 4.1E+02 0.0089 22.0 7.1 41 85-125 65-105 (110)
195 COG4467 Regulator of replicati 23.2 3.2E+02 0.007 23.9 6.4 22 104-125 32-53 (114)
196 PRK13182 racA polar chromosome 23.1 3.8E+02 0.0083 24.6 7.4 19 115-133 125-143 (175)
197 PRK13923 putative spore coat p 23.1 6.2E+02 0.013 23.6 9.5 43 100-142 110-152 (170)
198 PF13851 GAS: Growth-arrest sp 22.9 6.2E+02 0.013 23.5 9.8 11 143-153 139-149 (201)
199 PF08651 DASH_Duo1: DASH compl 22.8 4.1E+02 0.0089 21.4 7.2 65 84-156 2-66 (78)
200 PHA01819 hypothetical protein 22.8 1.1E+02 0.0024 26.4 3.6 31 118-151 73-103 (129)
201 PF10018 Med4: Vitamin-D-recep 22.7 5.7E+02 0.012 23.2 8.4 51 84-135 13-63 (188)
202 PRK08032 fliD flagellar cappin 22.6 2.8E+02 0.0061 28.8 7.2 33 93-125 405-437 (462)
203 PF04420 CHD5: CHD5-like prote 22.6 5.3E+02 0.012 23.0 8.1 71 82-152 42-118 (161)
204 PF09304 Cortex-I_coil: Cortex 22.3 5.2E+02 0.011 22.4 9.9 55 81-135 17-71 (107)
205 PF10234 Cluap1: Clusterin-ass 22.2 3.8E+02 0.0083 26.5 7.6 31 88-118 184-214 (267)
206 PF11853 DUF3373: Protein of u 21.9 85 0.0018 33.5 3.3 22 88-109 32-53 (489)
207 PF11471 Sugarporin_N: Maltopo 21.7 1.2E+02 0.0025 23.5 3.2 22 112-133 29-50 (60)
208 cd00890 Prefoldin Prefoldin is 21.6 4.5E+02 0.0097 21.5 7.0 42 84-125 84-125 (129)
209 PRK07737 fliD flagellar cappin 21.6 4.2E+02 0.0092 27.9 8.3 29 97-125 444-472 (501)
210 PF06667 PspB: Phage shock pro 21.5 1.5E+02 0.0032 24.0 3.9 22 108-129 42-63 (75)
211 PF15456 Uds1: Up-regulated Du 21.3 3.7E+02 0.008 23.5 6.6 46 100-146 21-66 (124)
212 PF12709 Kinetocho_Slk19: Cent 21.3 3.1E+02 0.0067 22.9 5.8 35 86-120 48-82 (87)
213 smart00787 Spc7 Spc7 kinetocho 21.1 5.4E+02 0.012 25.7 8.5 24 83-106 147-170 (312)
214 PF02388 FemAB: FemAB family; 21.1 5.1E+02 0.011 26.3 8.5 55 86-140 241-298 (406)
215 PF12269 zf-CpG_bind_C: CpG bi 20.9 2.4E+02 0.0051 27.5 5.8 26 118-143 39-64 (236)
216 PF03961 DUF342: Protein of un 20.6 6.7E+02 0.015 25.7 9.4 26 84-109 331-356 (451)
217 PF10458 Val_tRNA-synt_C: Valy 20.4 3.9E+02 0.0085 20.3 8.4 25 85-109 2-26 (66)
218 PF02996 Prefoldin: Prefoldin 20.4 3.9E+02 0.0086 21.7 6.4 42 84-125 74-115 (120)
219 PRK15422 septal ring assembly 20.4 5E+02 0.011 21.5 9.5 35 85-119 9-43 (79)
220 TIGR02976 phageshock_pspB phag 20.4 1.6E+02 0.0035 23.7 3.9 19 111-129 45-63 (75)
221 PF15070 GOLGA2L5: Putative go 20.4 7.3E+02 0.016 27.3 9.9 46 83-128 83-128 (617)
222 PF10168 Nup88: Nuclear pore c 20.4 5.3E+02 0.011 28.8 9.0 52 87-138 572-623 (717)
223 PRK06664 fliD flagellar hook-a 20.2 4.9E+02 0.011 28.8 8.7 55 95-152 601-655 (661)
No 1
>KOG0627 consensus Heat shock transcription factor [Transcription]
Probab=100.00 E-value=4.5e-35 Score=277.94 Aligned_cols=176 Identities=32% Similarity=0.406 Sum_probs=140.1
Q ss_pred CcccccCCc---chHHhhhcCCCCCCccccC--CCCceeecCCccccchhhHHhhhhcCCCCCcchh--hh-cccccccc
Q 019406 3 LKLNYLKYQ---LSLKQLLTFSFSQGFRKID--TDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQR--KS-LQQSEKLV 74 (341)
Q Consensus 3 lLPkYFKHs---SFvRQLNm~l~~YGFRKVd--pDrWEFANe~F~RGq~hLLknIkRRK~~~s~~~q--~s-~qqq~~~~ 74 (341)
|||+||||+ |||||||| ||||||+ +|+|||+|++|+||++|||++|+|||+.+..... .. ........
T Consensus 53 ~Lp~~FKh~NfsSFvRQLN~----YgFrKv~~~~~~wEF~n~~F~rg~~~LL~~I~rrk~~~~~~~~~~~~~~~~~~~~~ 128 (304)
T KOG0627|consen 53 LLPLYFKHNNFSSFVRQLNM----YGFRKVDFKSDRWEFSNPCFVRGQKLLLKNIKRRKSASRIFQTKDSPKSFERQLNL 128 (304)
T ss_pred HhHHhccccCccceeeeecc----cceeecCCCCCceeecChhHhcChHHHHHHHhhhccccCCcccccCcchhhhhhhH
Confidence 799999998 99999999 9999999 9999999999999999999999999998765321 11 00000001
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHhhcCc
Q 019406 75 EPCEKIDHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQNPSFLVQLLQP 154 (341)
Q Consensus 75 ~~~~e~~~~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMmsFLakv~qnP~fl~qLvqq 154 (341)
..+.......+..++.+|++++++|+.|+++||+++..+..+++.+.+++..++++|++|+.|+++++++|+|+.++.+.
T Consensus 129 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 208 (304)
T KOG0627|consen 129 YGFVKIRQLNLKESAKSLSKENEVLQRELVELRQQQDALRATIQTSKRVVKSKETRNSLILSFLARDVQSPGFLNQAPQR 208 (304)
T ss_pred HHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccccCchhhHHHHHhhHHHhhccCccchhcccch
Confidence 12233345678899999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred ccccchhhhccchhhhhcccCCCCCCCCCeeeeCCCCCC
Q 019406 155 KENNWRMAEAGTMLEEVTEVGEPIASDNMLVRYHPPIDE 193 (341)
Q Consensus 155 ~e~~~r~~~~~~~~~~~~~~~~~~~~~~~Iv~yqp~~~e 193 (341)
......+...+.. .....+++|+|..+.
T Consensus 209 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~ 236 (304)
T KOG0627|consen 209 QPGNKNFKELNSE-----------PSYPKSVTRQPSAND 236 (304)
T ss_pred hhhhhccccccCC-----------CCCccceeecCCCCc
Confidence 5311111111100 006778888888776
No 2
>COG5169 HSF1 Heat shock transcription factor [Transcription]
Probab=99.74 E-value=3.5e-19 Score=170.69 Aligned_cols=124 Identities=23% Similarity=0.252 Sum_probs=87.4
Q ss_pred CcccccCCc---chHHhhhcCCCCCCccccC---------CC-CceeecCCccccchhhHHhhhhcCCCCCcchhhhccc
Q 019406 3 LKLNYLKYQ---LSLKQLLTFSFSQGFRKID---------TD-RWEFANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQ 69 (341)
Q Consensus 3 lLPkYFKHs---SFvRQLNm~l~~YGFRKVd---------pD-rWEFANe~F~RGq~hLLknIkRRK~~~s~~~q~s~qq 69 (341)
+||+||||+ |||||||| ||||||. ++ .|||.|++|++|..+||++|+|||.+..... .
T Consensus 51 iLpr~FKh~NfaSFVRQLN~----YgFhKv~h~~~~~~~~n~~~wef~~~nF~~g~~~~L~~i~r~ka~~~~~~---~-- 121 (282)
T COG5169 51 ILPRYFKHGNFASFVRQLNK----YGFHKVSHKSGQRSYYNENVWEFGNKNFQLGMIELLKKIKRKKAPSNRVD---S-- 121 (282)
T ss_pred hhhhhhcccCHHHHHHHHHh----cCcEeccCCcccccccchhheeecCchhccCcHHHHHHhhhhhcCccccc---c--
Confidence 799999999 99999999 9999997 12 3999999999999999999999887643211 0
Q ss_pred ccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019406 70 SEKLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAM 142 (341)
Q Consensus 70 q~~~~~~~~e~~~~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMmsFLakv~ 142 (341)
.+....|.. + .+++.+-..+..+..++.+|+..+++++..+..+...+..--.+...+.++|+.+-
T Consensus 122 -~~~s~~~~~----~--~~~~~~i~~~~~~~~~~S~l~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~l~~~s 187 (282)
T COG5169 122 -NNESKDAMM----N--IEVENIILPQSELYNSLSSLSNVNQTLLLYLNELKEYNYRNLRTIDDINAMLADLS 187 (282)
T ss_pred -cCCCCcccc----c--hhhhhhhchhcccCcchhHHhhhhHHHhhhhccccchhhhcccccchhhhcccCcc
Confidence 000111110 0 35666666677777777777777777777777776666554445555666665544
No 3
>PF00447 HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR000232 Heat shock factor (HSF) is a transcriptional activator of heat shock genes []: it binds specifically to heat shock promoter elements, which are palindromic sequences rich with repetitive purine and pyrimidine motifs []. Under normal conditions, HSF is a homo-trimeric cytoplasmic protein, but heat shock activation results in relocalisation to the nucleus []. Each HSF monomer contains one C-terminal and three N-terminal leucine zipper repeats []. Point mutations in these regions result in disruption of cellular localisation, rendering the protein constitutively nuclear []. Two sequences flanking the N-terminal zippers fit the consensus of a bi- partite nuclear localisation signal (NLS). Interaction between the N- and C-terminal zippers may result in a structure that masks the NLS sequences: following activation of HSF, these may then be unmasked, resulting in relocalisation of the protein to the nucleus []. The DNA-binding component of HSF lies to the N terminus of the first NLS region, and is referred to as the HSF domain.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1FBQ_B 1FYL_B 1FBS_A 1FYM_B 3HTS_B 2HTS_A 3HSF_A 1FBU_B 1FYK_A 2LDU_A ....
Probab=99.74 E-value=2.7e-19 Score=146.34 Aligned_cols=51 Identities=39% Similarity=0.651 Sum_probs=42.7
Q ss_pred CcccccCCc---chHHhhhcCCCCCCccccCCCC---------ceeecCCccccchhhHHhhhhcCC
Q 019406 3 LKLNYLKYQ---LSLKQLLTFSFSQGFRKIDTDR---------WEFANDGFVRDQKHLLNNICRRKN 57 (341)
Q Consensus 3 lLPkYFKHs---SFvRQLNm~l~~YGFRKVdpDr---------WEFANe~F~RGq~hLLknIkRRK~ 57 (341)
|||+||||+ |||||||+ |||+||..+. |+|+|++|+||+++||.+|+||++
T Consensus 40 vLp~~F~~~~~~SF~RQLn~----yGF~k~~~~~~~~~~~~~~~~f~h~~F~r~~~~lL~~I~r~~~ 102 (103)
T PF00447_consen 40 VLPKYFKHSNFSSFVRQLNM----YGFKKVSSDSNQSSLSSNIWEFYHPNFRRGQPDLLSKIKRRKS 102 (103)
T ss_dssp THHHHSST--HHHHHHHHHH----TTEEECC-SSCTTSSTTTTEEEEETT-BTTBCCCTTTS---TT
T ss_pred ccccccCccccceeeeEeee----eeeEEEecCccccccCCCCeEECCcCccCCCHHHHhhCccCCC
Confidence 899999998 99999999 9999998543 999999999999999999999975
No 4
>smart00415 HSF heat shock factor.
Probab=99.74 E-value=5.1e-19 Score=146.12 Aligned_cols=49 Identities=51% Similarity=0.794 Sum_probs=47.2
Q ss_pred CcccccCCc---chHHhhhcCCCCCCccccCC-----------CCceeecCCccccchhhHHhhhhc
Q 019406 3 LKLNYLKYQ---LSLKQLLTFSFSQGFRKIDT-----------DRWEFANDGFVRDQKHLLNNICRR 55 (341)
Q Consensus 3 lLPkYFKHs---SFvRQLNm~l~~YGFRKVdp-----------DrWEFANe~F~RGq~hLLknIkRR 55 (341)
|||+||||+ ||+||||| ||||||.+ +.|||.|++|+||+++||.+|+||
T Consensus 43 vLp~~Fk~~~~~SF~RqLn~----yGF~k~~~~~~~~~~~~~~~~~~F~h~~F~Rg~~~lL~~I~Rk 105 (105)
T smart00415 43 LLPRYFKHNNFSSFVRQLNM----YGFRKVDPEFQGILYNFTSDQWEFANPDFVRGQPELLRNIKRK 105 (105)
T ss_pred HHHHhcCCCCHHHHHHHHHh----cCCEEeccccccccccCCCCceEEECcCccCcCHHHHHhCcCC
Confidence 799999999 99999999 99999986 789999999999999999999997
No 5
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=92.33 E-value=0.32 Score=42.49 Aligned_cols=62 Identities=15% Similarity=0.254 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHhhcCcccccchh
Q 019406 97 NALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQNPSFLVQLLQPKENNWRM 161 (341)
Q Consensus 97 ~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMmsFLakv~qnP~fl~qLvqq~e~~~r~ 161 (341)
+++..||+.+++.+..+...+.+|-++++..++.+++|.++-|+++++ +...+.+-+-+.++
T Consensus 2 ~~~~kEi~~l~~~lk~~~~~i~ailek~~s~~~~~e~lEsiAAKIIkD---isdkIdkCeC~Kel 63 (121)
T PF03310_consen 2 ATIIKEISELIQELKKIESDIKAILEKLQSTEQDQENLESIAAKIIKD---ISDKIDKCECNKEL 63 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHH---HHHHHHT-TTHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH---HHHHHHhchhhHHH
Confidence 456789999999999999999999999999999999999999999997 66666554433344
No 6
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.54 E-value=2 Score=34.76 Aligned_cols=54 Identities=26% Similarity=0.352 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 84 ALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVM 140 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMmsFLak 140 (341)
-|.-||+.||..++.|.+|...+++....+..+...+.+-.++ .|..+-+.|.+
T Consensus 22 LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~---WQerlrsLLGk 75 (79)
T COG3074 22 LLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNG---WQERLRALLGK 75 (79)
T ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhh
Confidence 3556999999999999999999999999999988888877765 44455555544
No 7
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=90.17 E-value=2.9 Score=36.30 Aligned_cols=60 Identities=22% Similarity=0.353 Sum_probs=46.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 80 IDHSALWKEVENLKAGKNALTQELLKLRQYQET---ADNKLLLLRDRVQGMEKSQQQMLSFLV 139 (341)
Q Consensus 80 ~~~~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~---~~~el~~leeRLq~~EqrQQQMmsFLa 139 (341)
+....+..++.+|...+..+..||++|-..+.. ...++..++..+..++.|.+.++..|.
T Consensus 30 ~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellG 92 (120)
T PF12325_consen 30 GELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLG 92 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455677788888888888899999999888744 456677888888888888877776653
No 8
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=89.90 E-value=1.6 Score=35.72 Aligned_cols=43 Identities=28% Similarity=0.349 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 019406 84 ALWKEVENLKAGKNALTQELLK-------LRQYQETADNKLLLLRDRVQG 126 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~r-------LRQqqq~~~~el~~leeRLq~ 126 (341)
-|.-||+.||..+..|.+|+.. |+++++.+..+-....+|+++
T Consensus 22 LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~ 71 (79)
T PRK15422 22 LLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQA 71 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566999999999999999998 445555555555555555543
No 9
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=89.73 E-value=3.2 Score=33.04 Aligned_cols=45 Identities=24% Similarity=0.303 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 83 SALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGM 127 (341)
Q Consensus 83 ~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~ 127 (341)
..|..||+.||..+..|..+-..|+++++.+..+-.+..+|++++
T Consensus 21 ~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~L 65 (72)
T PF06005_consen 21 ALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888888888888888888888887777777777777654
No 10
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=89.28 E-value=1.7 Score=40.21 Aligned_cols=76 Identities=14% Similarity=0.170 Sum_probs=33.1
Q ss_pred eecCCccccchhhHHhhhhcCCCCCcchhhhcccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 36 FANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQYQETADN 115 (341)
Q Consensus 36 FANe~F~RGq~hLLknIkRRK~~~s~~~q~s~qqq~~~~~~~~e~~~~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~ 115 (341)
=.||.|...+++||..|+=. |.. + ++.+ .....+.+||++++.++.
T Consensus 16 ~~~PdFf~~~~~ll~~l~~p---h~~---------~-~avS---------------------L~erQ~~~LR~~~~~L~~ 61 (225)
T PF04340_consen 16 RQHPDFFERHPELLAELRLP---HPS---------G-GAVS---------------------LVERQLERLRERNRQLEE 61 (225)
T ss_dssp --------------------------------------HHH---------------------HHHHHHHHHHHHHHHHHH
T ss_pred HhCcHHHHhCHHHHHHcCCC---CCC---------C-Cccc---------------------HHHHHHHHHHHHHHHHHH
Confidence 36999999999999998631 111 0 1111 122556666777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 019406 116 KLLLLRDRVQGMEKSQQQMLSFLVMAMQNP 145 (341)
Q Consensus 116 el~~leeRLq~~EqrQQQMmsFLakv~qnP 145 (341)
++..|-+.-+.-++.++++..+..+++.-.
T Consensus 62 ~l~~Li~~Ar~Ne~~~~~~~~l~l~LL~a~ 91 (225)
T PF04340_consen 62 QLEELIENARENEAIFQRLHRLVLALLAAR 91 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 777777777777888888877777777644
No 11
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=85.36 E-value=7.3 Score=36.71 Aligned_cols=63 Identities=14% Similarity=0.276 Sum_probs=51.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019406 81 DHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQ 143 (341)
Q Consensus 81 ~~~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMmsFLakv~q 143 (341)
....+..+++.|+++...|.....++.........++..+++++...+...+.+..+|.+++.
T Consensus 50 e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~ 112 (251)
T PF11932_consen 50 EKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMID 112 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888888888888888888888888888888888888888888888888877775
No 12
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=85.12 E-value=8.9 Score=34.21 Aligned_cols=61 Identities=28% Similarity=0.318 Sum_probs=50.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019406 83 SALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQ 143 (341)
Q Consensus 83 ~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMmsFLakv~q 143 (341)
.+|..+++.|-.....|..||..++.+...+...++.+.+|+...|..+-.+.++|..+=+
T Consensus 55 e~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ 115 (140)
T PF10473_consen 55 ETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQ 115 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4677788888888888899999999999999999999999999999988887777765433
No 13
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=83.63 E-value=12 Score=29.68 Aligned_cols=60 Identities=20% Similarity=0.255 Sum_probs=51.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 81 DHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVM 140 (341)
Q Consensus 81 ~~~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMmsFLak 140 (341)
....|+.|-+.|.+....+..-|-+||.+...+...+..+..|+...+..-..+-.+|.+
T Consensus 13 ~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~~ 72 (74)
T PF12329_consen 13 QIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLKR 72 (74)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 346788999999999999999999999999999999999999999888877777666543
No 14
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=83.09 E-value=5.5 Score=29.07 Aligned_cols=41 Identities=24% Similarity=0.363 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 85 LWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQ 125 (341)
Q Consensus 85 L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq 125 (341)
|+.+-+.||+....|..+-.+|.++++.+..++..+..+++
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45566677777777777777777777777777777776654
No 15
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=82.45 E-value=6.8 Score=30.89 Aligned_cols=41 Identities=22% Similarity=0.194 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 85 LWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQ 125 (341)
Q Consensus 85 L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq 125 (341)
|..-.++|+.++..|.+++..++.+...+..++...+.|+.
T Consensus 12 Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvE 52 (65)
T TIGR02449 12 LLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVE 52 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666666666655555554444444444443
No 16
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=80.83 E-value=12 Score=34.38 Aligned_cols=54 Identities=20% Similarity=0.290 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019406 89 VENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAM 142 (341)
Q Consensus 89 Ie~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMmsFLakv~ 142 (341)
...++.++..|..|+.+|++++..+..++..+..++...+..-+.|+..+-++-
T Consensus 99 ~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RAR 152 (161)
T TIGR02894 99 DQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRAR 152 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777888888889999999999999999999999999888888888876653
No 17
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=77.05 E-value=9.8 Score=41.84 Aligned_cols=64 Identities=17% Similarity=0.215 Sum_probs=55.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 019406 82 HSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQNP 145 (341)
Q Consensus 82 ~~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMmsFLakv~qnP 145 (341)
+..+...+..|+..+..-..+|..++++...+......+.+|+.....+|+.++.=+.++++..
T Consensus 560 r~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l 623 (717)
T PF10168_consen 560 REEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLL 623 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888999999889999999999999999999999999999999999998887777643
No 18
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=75.04 E-value=40 Score=26.82 Aligned_cols=53 Identities=11% Similarity=0.161 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 84 ALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLS 136 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMms 136 (341)
.+.+.|..|+.+...|..+-..|.+++..+..+...+++.......|...++.
T Consensus 15 ~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~ 67 (72)
T PF06005_consen 15 QAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLG 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666666666666666666555555444444443
No 19
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=75.01 E-value=23 Score=27.32 Aligned_cols=45 Identities=18% Similarity=0.287 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 83 SALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGM 127 (341)
Q Consensus 83 ~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~ 127 (341)
..|..+|..|......|..++..||..-+....+.....+||...
T Consensus 6 d~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~ 50 (56)
T PF04728_consen 6 DQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 357778888888888888999999888888888988888988754
No 20
>PRK10963 hypothetical protein; Provisional
Probab=73.85 E-value=18 Score=33.79 Aligned_cols=17 Identities=18% Similarity=0.315 Sum_probs=15.3
Q ss_pred ecCCccccchhhHHhhh
Q 019406 37 ANDGFVRDQKHLLNNIC 53 (341)
Q Consensus 37 ANe~F~RGq~hLLknIk 53 (341)
+||+|.-.+++||..|+
T Consensus 14 ~~PdFf~~h~~Ll~~L~ 30 (223)
T PRK10963 14 QNPDFFIRNARLVEQMR 30 (223)
T ss_pred HCchHHhhCHHHHHhcc
Confidence 59999999999999774
No 21
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=73.24 E-value=24 Score=34.91 Aligned_cols=53 Identities=26% Similarity=0.412 Sum_probs=39.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 81 DHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQ 133 (341)
Q Consensus 81 ~~~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQ 133 (341)
....+..|++.|+.+...+.+||..|+++...+..++..++......++...+
T Consensus 44 ~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~ 96 (314)
T PF04111_consen 44 DIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEE 96 (314)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888888888888888888888888888888887777766554443
No 22
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=70.77 E-value=22 Score=30.26 Aligned_cols=46 Identities=20% Similarity=0.237 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 84 ALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEK 129 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~Eq 129 (341)
.++..+..|-.+...|...+..|-.+|..+..+...|++|+...++
T Consensus 12 ~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 12 QLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555666666666666666667777777777788888888876555
No 23
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=68.07 E-value=37 Score=26.10 Aligned_cols=38 Identities=8% Similarity=0.204 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019406 98 ALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAM 142 (341)
Q Consensus 98 ~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMmsFLakv~ 142 (341)
.+...|..+|.+++.+...+..++ +.-+.+|+.--.|-
T Consensus 11 ~~~~~i~tvk~en~~i~~~ve~i~-------envk~ll~lYE~Vs 48 (55)
T PF05377_consen 11 RIESSINTVKKENEEISESVEKIE-------ENVKDLLSLYEVVS 48 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 333444444444444444444444 44456666544443
No 24
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=67.92 E-value=55 Score=25.41 Aligned_cols=57 Identities=5% Similarity=0.182 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 84 ALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVM 140 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMmsFLak 140 (341)
.+...+.+++.....+...+..+.+.......++..+.+++...+..+.=+..++..
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~~r~iiG 59 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWIWRTIIG 59 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888999999999999999999999999999998888876665544
No 25
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=67.82 E-value=3.2 Score=37.99 Aligned_cols=41 Identities=17% Similarity=0.361 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 84 ALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEK 129 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~Eq 129 (341)
-|+.|| .+++.|..+++|||.+...+..++ .+++|+...+.
T Consensus 18 lLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl-~V~ek~~~~~~ 58 (166)
T PF04880_consen 18 LLESEL----DEKENLREEVQRLKDELRDLKQEL-IVQEKLRKANR 58 (166)
T ss_dssp HHHHHH----HHHHHHHHCH--------------------------
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhc
Confidence 356677 578889999999999999999999 88888876543
No 26
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=66.66 E-value=29 Score=29.82 Aligned_cols=44 Identities=20% Similarity=0.188 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 84 ALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGM 127 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~ 127 (341)
.++..+..|-.+...|.+.|..|-.+|..+..+...+++|+...
T Consensus 12 ~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 12 DLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556666666666666666666677777777777788888754
No 27
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=66.14 E-value=28 Score=33.74 Aligned_cols=54 Identities=26% Similarity=0.309 Sum_probs=46.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 79 KIDHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQ 132 (341)
Q Consensus 79 e~~~~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQ 132 (341)
...+..|..|+..+++....|..||+.|......+..++..+.+++..++..--
T Consensus 88 ~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~ 141 (239)
T COG1579 88 ERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLA 141 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346678999999999999999999999999999999999999988887766543
No 28
>smart00338 BRLZ basic region leucin zipper.
Probab=63.54 E-value=24 Score=26.53 Aligned_cols=35 Identities=31% Similarity=0.442 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 83 SALWKEVENLKAGKNALTQELLKLRQYQETADNKL 117 (341)
Q Consensus 83 ~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el 117 (341)
..|+.++..|...+..|..++..|+.++..+..++
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 29 EELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35666777777777777777777766666655443
No 29
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=63.34 E-value=47 Score=35.23 Aligned_cols=39 Identities=21% Similarity=0.275 Sum_probs=29.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 82 HSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLL 120 (341)
Q Consensus 82 ~~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~l 120 (341)
...+..+++.|.+++..|..|-.+||+..+.+..+++..
T Consensus 68 ~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~a 106 (472)
T TIGR03752 68 VKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQA 106 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 346777888888888888888888888777777666543
No 30
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=62.76 E-value=97 Score=27.57 Aligned_cols=62 Identities=18% Similarity=0.238 Sum_probs=51.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019406 81 DHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAM 142 (341)
Q Consensus 81 ~~~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMmsFLakv~ 142 (341)
....+..|++.+.+....+..++..++...+..........+|++..+.....+..=+..+.
T Consensus 89 ~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 89 QLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567789999999999999999999988888888888888888888888888877666655
No 31
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=61.99 E-value=69 Score=26.14 Aligned_cols=55 Identities=24% Similarity=0.444 Sum_probs=38.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 80 IDHSALWKEVENLKAGKNALTQELLKLRQY---QETADNKLLLLRDRVQGMEKSQQQM 134 (341)
Q Consensus 80 ~~~~~L~~EIe~LKrDq~~L~qEL~rLRQq---qq~~~~el~~leeRLq~~EqrQQQM 134 (341)
.....+..+++.|+..++.+..+|..+... -+.+..++..+.+.+...|.....+
T Consensus 36 ~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~ 93 (108)
T PF02403_consen 36 QERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKEL 93 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355678889999999999999999888763 4445555555555555555544443
No 32
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=61.97 E-value=62 Score=27.91 Aligned_cols=55 Identities=25% Similarity=0.268 Sum_probs=39.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 81 DHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQML 135 (341)
Q Consensus 81 ~~~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMm 135 (341)
....+..++..|-..+-.+..+|..+|.+......++..+..+....+++++.+.
T Consensus 35 ~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~ 89 (150)
T PF07200_consen 35 EREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELS 89 (150)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777777777888888888888888888888888888877777764
No 33
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=61.85 E-value=29 Score=25.28 Aligned_cols=36 Identities=33% Similarity=0.317 Sum_probs=18.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 81 DHSALWKEVENLKAGKNALTQELLKLRQYQETADNK 116 (341)
Q Consensus 81 ~~~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~e 116 (341)
++..|....+.|+.+...|..|..+|+.+...+...
T Consensus 6 Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 6 DYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555555555555555555444443
No 34
>PRK15396 murein lipoprotein; Provisional
Probab=60.93 E-value=50 Score=26.87 Aligned_cols=45 Identities=18% Similarity=0.273 Sum_probs=33.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 83 SALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGM 127 (341)
Q Consensus 83 ~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~ 127 (341)
..|..+|+.|+.+...+.+++..+|..-+....+..+..+||..+
T Consensus 28 d~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~ 72 (78)
T PRK15396 28 DQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQ 72 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777777777777777777777777888888887643
No 35
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=60.53 E-value=60 Score=35.44 Aligned_cols=62 Identities=16% Similarity=0.171 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 019406 84 ALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQNP 145 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMmsFLakv~qnP 145 (341)
.+..-+..|++.+..=.++|+.++++...+......+.+|+...-.+|.-++.-+-++++.|
T Consensus 585 e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~ 646 (741)
T KOG4460|consen 585 EIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSF 646 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Confidence 45556777888888888999999999999999999999999999999999999999999877
No 36
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=59.86 E-value=81 Score=24.56 Aligned_cols=36 Identities=25% Similarity=0.343 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 95 GKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKS 130 (341)
Q Consensus 95 Dq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~Eqr 130 (341)
-+..+..||.+.+..+..+..+++..+.|.+.++..
T Consensus 12 akQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~e 47 (61)
T PF08826_consen 12 AKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQE 47 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555444443
No 37
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=59.14 E-value=33 Score=30.66 Aligned_cols=43 Identities=19% Similarity=0.248 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 90 ENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLV 139 (341)
Q Consensus 90 e~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMmsFLa 139 (341)
..|.+++..|++||-+|++++..+..++.+++.+. +++..|-.
T Consensus 77 ~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~-------e~l~~~~~ 119 (135)
T KOG4196|consen 77 HELEKEKAELQQQVEKLKEENSRLRRELDAYKSKY-------EALQNSAV 119 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhhh
Confidence 44667788888888888887777666666665555 45666654
No 38
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=59.07 E-value=27 Score=38.01 Aligned_cols=66 Identities=24% Similarity=0.255 Sum_probs=36.7
Q ss_pred CCccccchhhHHhhhhcCCCCCcchhhhcccccccccchhh---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 39 DGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKLVEPCEK---IDHSALWKEVENLKAGKNALTQELLKLRQYQETADN 115 (341)
Q Consensus 39 e~F~RGq~hLLknIkRRK~~~s~~~q~s~qqq~~~~~~~~e---~~~~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~ 115 (341)
..|-.-|-.|.+.||||....... ..|-- .-...|+.||+.|+++++.|..|=..+....-.+..
T Consensus 479 ~~lte~QLslIrDIRRRgKNkvAA------------QnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~~d~~L~~~kq 546 (604)
T KOG3863|consen 479 YKLTEEQLSLIRDIRRRGKNKVAA------------QNCRKRKLDCILNLEDEVEKLQKEKEQLLRERDELDSTLGVMKQ 546 (604)
T ss_pred cccCHHHHHHhhccccccccchhc------------cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555889999999995432211 11211 123456777777777777666555544444333333
Q ss_pred H
Q 019406 116 K 116 (341)
Q Consensus 116 e 116 (341)
+
T Consensus 547 q 547 (604)
T KOG3863|consen 547 Q 547 (604)
T ss_pred H
Confidence 3
No 39
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=58.80 E-value=1.1e+02 Score=32.54 Aligned_cols=110 Identities=19% Similarity=0.203 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhcCChHHHhhcCcccccc
Q 019406 88 EVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRV--------QGMEKSQQQMLSFLVMAMQNPSFLVQLLQPKENNW 159 (341)
Q Consensus 88 EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRL--------q~~EqrQQQMmsFLakv~qnP~fl~qLvqq~e~~~ 159 (341)
+-+.++.....|..||.|||.+......+.+.--.++ ...++-|.++..-| ....-+.+.+..+++..
T Consensus 247 ~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL~~e~----erRealcr~lsEsessl 322 (552)
T KOG2129|consen 247 EAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQRKLINEL----ERREALCRMLSESESSL 322 (552)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH----HHHHHHHHHhhhhhHHH
Confidence 3445555556666666666655433322221111111 12233333333333 33556677777677666
Q ss_pred hhhhcc---chhhhhcc-c--CCC------CCCCCCeeeeCCCCCCCCCCCCCC
Q 019406 160 RMAEAG---TMLEEVTE-V--GEP------IASDNMLVRYHPPIDETPKPVLKP 201 (341)
Q Consensus 160 r~~~~~---~~~~~~~~-~--~~~------~~~~~~Iv~yqp~~~e~~~~~~~p 201 (341)
.+.+.. .+++.|.. + ... ..+-..-|.+.||+-.+..++.+|
T Consensus 323 emdeery~Ne~~~~g~s~~Va~~asas~~~~~sas~~vs~~sPvs~t~s~~s~~ 376 (552)
T KOG2129|consen 323 EMDEERYLNEFVDFGDSVEVALHASASQKYNGSASPNVSANSPVSNTNSPASST 376 (552)
T ss_pred HHHHHHHHhhhhccCCceeeecccchhhhCCCCCCCccccCCCcccCCCccccc
Confidence 665543 33333221 0 001 112345677777777777766555
No 40
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=58.04 E-value=1.3e+02 Score=26.22 Aligned_cols=53 Identities=13% Similarity=0.262 Sum_probs=42.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 82 HSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQM 134 (341)
Q Consensus 82 ~~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQM 134 (341)
...|-+.|.++-.+...+..++.+|.++...+..++..+..+.......-.++
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~ 70 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEV 70 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888899999999999999999999999999999888887665444433
No 41
>PRK11637 AmiB activator; Provisional
Probab=57.77 E-value=1.1e+02 Score=30.94 Aligned_cols=58 Identities=9% Similarity=0.040 Sum_probs=34.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 83 SALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVM 140 (341)
Q Consensus 83 ~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMmsFLak 140 (341)
..+..+|..+......+..+|..+.++...+..++..+++++...+..-.+.+..+.+
T Consensus 78 ~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 78 KKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556666666666666666666666666666666666555555555554444
No 42
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=57.37 E-value=45 Score=25.04 Aligned_cols=33 Identities=24% Similarity=0.378 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 84 ALWKEVENLKAGKNALTQELLKLRQYQETADNK 116 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~e 116 (341)
.|...+..|..++..|..++..|+++.+.+..+
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 30 ELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455556666666666666666555555554443
No 43
>PRK09039 hypothetical protein; Validated
Probab=56.90 E-value=86 Score=31.41 Aligned_cols=42 Identities=17% Similarity=0.140 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 93 KAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQM 134 (341)
Q Consensus 93 KrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQM 134 (341)
..+...|.+||..||.|...+...+...++|....+.+...+
T Consensus 136 ~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L 177 (343)
T PRK09039 136 LAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADL 177 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444333333333
No 44
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=56.66 E-value=87 Score=29.88 Aligned_cols=56 Identities=21% Similarity=0.265 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 83 SALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFL 138 (341)
Q Consensus 83 ~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMmsFL 138 (341)
..+..|+..+|+....|..+|..|+..+..+..++..++.++...-..-+..+.-|
T Consensus 212 ~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~l 267 (312)
T PF00038_consen 212 ESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAEL 267 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhcc
Confidence 35567888888888889999998888888888888888888876555444444444
No 45
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=55.61 E-value=1.4e+02 Score=26.82 Aligned_cols=39 Identities=28% Similarity=0.274 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 87 KEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQ 125 (341)
Q Consensus 87 ~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq 125 (341)
.+|+.|+.+...+.+++.+|+.+..++..+-..+.+-++
T Consensus 52 ~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq 90 (140)
T PF10473_consen 52 AEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQ 90 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555554444444443
No 46
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=55.48 E-value=1.1e+02 Score=28.82 Aligned_cols=51 Identities=20% Similarity=0.261 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 85 LWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQML 135 (341)
Q Consensus 85 L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMm 135 (341)
+..|-..|..+...|..|+..|+.++..+...+...++++...++++.++-
T Consensus 47 ~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 47 WDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444444444433
No 47
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=54.35 E-value=35 Score=28.72 Aligned_cols=35 Identities=14% Similarity=0.043 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 88 EVENLKAGKNALTQELLKLRQYQETADNKLLLLRD 122 (341)
Q Consensus 88 EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~lee 122 (341)
....++++...+.+|+.+++++++.+..++..++.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 45566666777777777777777777666666554
No 48
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=54.34 E-value=76 Score=31.30 Aligned_cols=54 Identities=24% Similarity=0.151 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
Q 019406 84 ALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQ-----GMEKSQQQMLSF 137 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq-----~~EqrQQQMmsF 137 (341)
.|+.+|..|-.++..|..|=..||.++..+-.+.+.+..++. -++-+|++++.-
T Consensus 94 eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~~~~~ 152 (292)
T KOG4005|consen 94 EMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQQHNT 152 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHhh
Confidence 455566666666666666666666666555555555544444 344455555443
No 49
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=54.12 E-value=1.2e+02 Score=24.79 Aligned_cols=41 Identities=17% Similarity=0.292 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 84 ALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRV 124 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRL 124 (341)
.|..++..|+.....|+..+...+.++..+..+.+.|.+-+
T Consensus 20 ~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI 60 (80)
T PF10224_consen 20 ELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYI 60 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555444444444443333
No 50
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.68 E-value=55 Score=31.46 Aligned_cols=102 Identities=14% Similarity=0.129 Sum_probs=53.1
Q ss_pred ceeecCCccccchhhHHhhhhcCCCCCcchhhhcccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH---HH
Q 019406 34 WEFANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQ---YQ 110 (341)
Q Consensus 34 WEFANe~F~RGq~hLLknIkRRK~~~s~~~q~s~qqq~~~~~~~~e~~~~~L~~EIe~LKrDq~~L~qEL~rLRQ---qq 110 (341)
|=-.||.|.+-+++||..|+=..+..+ +.+.++ -.+++++..+..|..++..|-+ .|
T Consensus 12 yL~~hPeFf~~h~~Ll~~L~lph~~~~-------------tVSLve-------~ql~r~R~~~~~Le~~l~~L~~~A~~N 71 (218)
T COG3159 12 YLRQHPEFFIQHAELLEELRLPHPVAG-------------TVSLVE-------RQLARLRNRIRELEEELAALMENARAN 71 (218)
T ss_pred HHHhCcHHHHhCHHHHHHcCCCCCCCC-------------eeehHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445699999999999999976432221 122222 2455555555555555555443 45
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhcCChHHHhhcCcc
Q 019406 111 ETADNKLLLLRDRVQGMEKSQQ---QMLSFLVMAMQNPSFLVQLLQPK 155 (341)
Q Consensus 111 q~~~~el~~leeRLq~~EqrQQ---QMmsFLakv~qnP~fl~qLvqq~ 155 (341)
..+-.++.++..++-..-.-+. .+-..+++-++-++-...|.+..
T Consensus 72 ~~lf~r~~~lq~~Ll~a~sl~d~l~~v~~~~a~~f~l~~a~l~L~~~~ 119 (218)
T COG3159 72 ERLFYRLHALQLDLLDARSLDDLLRRVDRSWARDFGLAAASLRLFQDS 119 (218)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhCCCceEEEEechh
Confidence 5555555555555543322221 22223444444444444444443
No 51
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=53.67 E-value=74 Score=30.37 Aligned_cols=34 Identities=32% Similarity=0.398 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 84 ALWKEVENLKAGKNALTQELLKLRQYQETADNKL 117 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el 117 (341)
.+..+.+.|...+..|..|+..||++||.+.++-
T Consensus 35 ~~~~d~~~L~~~Q~~L~~e~~~l~~eqQ~l~~er 68 (228)
T PRK06800 35 EIQKDHEELLAQQKSLHKELNQLRQEQQKLERER 68 (228)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788899999999999999998888876653
No 52
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=53.60 E-value=1.4e+02 Score=25.78 Aligned_cols=47 Identities=15% Similarity=0.299 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 85 LWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQ 131 (341)
Q Consensus 85 L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQ 131 (341)
+...+.++..|...|...+.+|+.+...+..++.....+...++...
T Consensus 57 l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~ 103 (151)
T PF11559_consen 57 LSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQL 103 (151)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555555555555444444444444433
No 53
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=53.39 E-value=63 Score=31.32 Aligned_cols=41 Identities=24% Similarity=0.356 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 87 KEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGM 127 (341)
Q Consensus 87 ~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~ 127 (341)
.|+++++++...+..++..++.+......+++.+++|+...
T Consensus 38 ~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~ 78 (239)
T COG1579 38 AELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRA 78 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444333
No 54
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=52.81 E-value=60 Score=35.82 Aligned_cols=53 Identities=23% Similarity=0.273 Sum_probs=35.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 82 HSALWKEVENLKAGKNALTQELLKLRQY-------QETADNKLLLLRDRVQGMEKSQQQM 134 (341)
Q Consensus 82 ~~~L~~EIe~LKrDq~~L~qEL~rLRQq-------qq~~~~el~~leeRLq~~EqrQQQM 134 (341)
...|+.||++||.|.....+-=..||++ ...+..+|+.++.....++.|.+.+
T Consensus 420 ~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L 479 (697)
T PF09726_consen 420 ISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNL 479 (697)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3579999999999988877777777776 2334455555655555555444433
No 55
>PRK10884 SH3 domain-containing protein; Provisional
Probab=52.46 E-value=53 Score=30.87 Aligned_cols=39 Identities=15% Similarity=0.165 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 86 WKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRV 124 (341)
Q Consensus 86 ~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRL 124 (341)
...+..|+.++..|.+|+..++.+...+..++..+.+..
T Consensus 131 ~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 131 DSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566666666666555555555555554444443
No 56
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=51.99 E-value=82 Score=27.90 Aligned_cols=59 Identities=17% Similarity=0.208 Sum_probs=27.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 019406 82 HSALWKEVENLKAGKNALTQELLKLRQYQETADNKL--LLLRDRVQGMEKSQQQMLSFLVM 140 (341)
Q Consensus 82 ~~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el--~~leeRLq~~EqrQQQMmsFLak 140 (341)
...+..+|..|+.+...|..++..|+.+...+...+ ..|...+...+....+|-+=|..
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~ 134 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEK 134 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555444443332 23334444444444444444443
No 57
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=50.28 E-value=99 Score=31.86 Aligned_cols=28 Identities=32% Similarity=0.360 Sum_probs=22.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 81 DHSALWKEVENLKAGKNALTQELLKLRQ 108 (341)
Q Consensus 81 ~~~~L~~EIe~LKrDq~~L~qEL~rLRQ 108 (341)
+.++|..|..+||++++.|..||.+|+.
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~eVerLE~ 60 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIEVERLEN 60 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4467888888999999888888888843
No 58
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=50.02 E-value=1.1e+02 Score=30.05 Aligned_cols=48 Identities=19% Similarity=0.332 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 88 EVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQML 135 (341)
Q Consensus 88 EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMm 135 (341)
+++.+|.+...+..+|...|+....+..++..+.+++...+...+++.
T Consensus 210 eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~ 257 (325)
T PF08317_consen 210 ELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELL 257 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444455554444555555555555555544444433333
No 59
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=48.36 E-value=73 Score=31.07 Aligned_cols=40 Identities=35% Similarity=0.331 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 86 WKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQ 125 (341)
Q Consensus 86 ~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq 125 (341)
...+.+|+.++..|..|+..|+++++....++..=.+||+
T Consensus 65 ~~~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr 104 (283)
T TIGR00219 65 LKDVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLR 104 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677788888888888876666654444444445553
No 60
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=48.30 E-value=91 Score=25.91 Aligned_cols=47 Identities=21% Similarity=0.188 Sum_probs=38.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 81 DHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGM 127 (341)
Q Consensus 81 ~~~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~ 127 (341)
....|.++|..|+.+...+.+++..++..-+....+..+..+||..+
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiDN~ 71 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLDAQ 71 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 34467788889999999999999999888888888888888888753
No 61
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=48.09 E-value=1.4e+02 Score=24.45 Aligned_cols=45 Identities=20% Similarity=0.243 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 83 SALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGM 127 (341)
Q Consensus 83 ~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~ 127 (341)
..+..+|..|..|+..|.+||-........+..-...+.+||...
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a 79 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSA 79 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777766666555555555566666543
No 62
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=48.01 E-value=91 Score=34.48 Aligned_cols=58 Identities=19% Similarity=0.237 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhc
Q 019406 86 WKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRD-------RVQGMEKSQQQMLSFLVMAMQ 143 (341)
Q Consensus 86 ~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~lee-------RLq~~EqrQQQMmsFLakv~q 143 (341)
.+.+.+|..|...|..||...|+.=+.+..++..+.. -|..+.+...++-.-+..+.+
T Consensus 417 ~~a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~ 481 (697)
T PF09726_consen 417 PDAISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQ 481 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888888888888888553332 344555555555554444443
No 63
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=47.43 E-value=1.4e+02 Score=23.59 Aligned_cols=47 Identities=23% Similarity=0.275 Sum_probs=33.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 83 SALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEK 129 (341)
Q Consensus 83 ~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~Eq 129 (341)
..|..|...|+.....+..|=..|...++...+++.+|-.||..+|+
T Consensus 17 ~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~leq 63 (65)
T TIGR02449 17 ERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALEQ 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 45666777777777777777777777777777777777777776664
No 64
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=47.17 E-value=1.5e+02 Score=24.00 Aligned_cols=46 Identities=15% Similarity=0.342 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 019406 89 VENLKAGKNALTQELLKLRQYQET-------ADNKLLLLRDRVQGMEKSQQQM 134 (341)
Q Consensus 89 Ie~LKrDq~~L~qEL~rLRQqqq~-------~~~el~~leeRLq~~EqrQQQM 134 (341)
++.||.+-..+.+|+...+.+... --++|+.+++.+-.+|+.+.+|
T Consensus 6 Ld~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~km 58 (79)
T PF08581_consen 6 LDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKM 58 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555444333 3345666777777777777666
No 65
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=46.44 E-value=1.3e+02 Score=30.94 Aligned_cols=59 Identities=20% Similarity=0.307 Sum_probs=44.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 80 IDHSALWKEVENLKAGKNALTQELLKLRQY----QETADNKLLLLRDRVQGMEKSQQQMLSFL 138 (341)
Q Consensus 80 ~~~~~L~~EIe~LKrDq~~L~qEL~rLRQq----qq~~~~el~~leeRLq~~EqrQQQMmsFL 138 (341)
.....+..+++.|+.+++.+..+|..+.+. .+.+..++..+.+++..+|.....+-.=+
T Consensus 37 ~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 99 (418)
T TIGR00414 37 DERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAEL 99 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678889999999999999999876433 34566677778888888877777665544
No 66
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=46.17 E-value=1.4e+02 Score=26.33 Aligned_cols=57 Identities=21% Similarity=0.312 Sum_probs=40.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 80 IDHSALWKEVENLKAGKNALTQELLKLRQY--QETADNKLLLLRDRVQGMEKSQQQMLS 136 (341)
Q Consensus 80 ~~~~~L~~EIe~LKrDq~~L~qEL~rLRQq--qq~~~~el~~leeRLq~~EqrQQQMms 136 (341)
.....|..++..|+.+...|..||..|+.. ...+...+..+++.+..++.+...+-+
T Consensus 79 ~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 79 AEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456678889999999999999999888765 344555666666666666655554443
No 67
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=46.12 E-value=1.4e+02 Score=26.02 Aligned_cols=53 Identities=15% Similarity=0.176 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 87 KEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLV 139 (341)
Q Consensus 87 ~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMmsFLa 139 (341)
.+++.++.....+..++..|+.....+..++..++.|+....+|.=+++.-+.
T Consensus 44 ~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~e 96 (141)
T PF13874_consen 44 EEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLRKQE 96 (141)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777888888888777777888888888888766665444444443
No 68
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=45.98 E-value=68 Score=25.42 Aligned_cols=44 Identities=20% Similarity=0.346 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 84 ALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGM 127 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~ 127 (341)
.+..-|..||.....+..++..++........++..+++|+...
T Consensus 30 ~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~~~ 73 (74)
T PF12329_consen 30 KLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLKRA 73 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34556778888888888888888888888888888888887643
No 69
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=44.79 E-value=1.2e+02 Score=29.09 Aligned_cols=43 Identities=12% Similarity=0.081 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 98 ALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVM 140 (341)
Q Consensus 98 ~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMmsFLak 140 (341)
.|.+.|..|+++...++.++..+...++.+.+||+.+-.=|-+
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555556666666666666666665444433
No 70
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=44.69 E-value=1.1e+02 Score=23.60 Aligned_cols=28 Identities=7% Similarity=0.228 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 83 SALWKEVENLKAGKNALTQELLKLRQYQ 110 (341)
Q Consensus 83 ~~L~~EIe~LKrDq~~L~qEL~rLRQqq 110 (341)
..+...|..+|++++.|..+|.++.+.-
T Consensus 10 ~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 10 PRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666665555544
No 71
>PRK15396 murein lipoprotein; Provisional
Probab=44.46 E-value=1.7e+02 Score=23.79 Aligned_cols=50 Identities=8% Similarity=0.160 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 87 KEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLS 136 (341)
Q Consensus 87 ~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMms 136 (341)
.+|++|..+...|..++..+++..+.+...+++..+-....-+|...+..
T Consensus 25 ~kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~~~ 74 (78)
T PRK15396 25 AKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQAT 74 (78)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 49999999999999999999999999999999998888888888777654
No 72
>PRK11637 AmiB activator; Provisional
Probab=44.45 E-value=1.7e+02 Score=29.64 Aligned_cols=35 Identities=9% Similarity=0.113 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 84 ALWKEVENLKAGKNALTQELLKLRQYQETADNKLL 118 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~ 118 (341)
.+..+|..+..+...+..+|..++.+...+..++.
T Consensus 86 ~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~ 120 (428)
T PRK11637 86 QASRKLRETQNTLNQLNKQIDELNASIAKLEQQQA 120 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444433
No 73
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=44.39 E-value=2.3e+02 Score=27.52 Aligned_cols=40 Identities=15% Similarity=0.331 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 87 KEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQG 126 (341)
Q Consensus 87 ~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~ 126 (341)
+|++.|++++..+..++..+.+++..-..+...+.-.|..
T Consensus 43 ee~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~e 82 (230)
T PF03904_consen 43 EEIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEE 82 (230)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788899999988888888888887777777666666554
No 74
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=44.16 E-value=98 Score=33.48 Aligned_cols=38 Identities=29% Similarity=0.320 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 84 ALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLR 121 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~le 121 (341)
.+.+|+..+|+....|..|+.+|++++-.++.++..++
T Consensus 152 ~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r 189 (546)
T KOG0977|consen 152 ELEAEINTLKRRIKALEDELKRLKAENSRLREELARAR 189 (546)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 34445555555555555555555555555554444444
No 75
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=43.95 E-value=1.8e+02 Score=26.74 Aligned_cols=33 Identities=24% Similarity=0.386 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 83 SALWKEVENLKAGKNALTQELLKLRQYQETADN 115 (341)
Q Consensus 83 ~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~ 115 (341)
..+..+|..|+.++..|..++..++...+.+..
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek 155 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNKCEQLEK 155 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555544443
No 76
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=43.84 E-value=1.3e+02 Score=31.04 Aligned_cols=59 Identities=22% Similarity=0.336 Sum_probs=44.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 80 IDHSALWKEVENLKAGKNALTQELLKLRQY---QETADNKLLLLRDRVQGMEKSQQQMLSFL 138 (341)
Q Consensus 80 ~~~~~L~~EIe~LKrDq~~L~qEL~rLRQq---qq~~~~el~~leeRLq~~EqrQQQMmsFL 138 (341)
.....+..+++.|+++++.+..+|..+.+. -+.+..+...+.+++..+|.....+-.=+
T Consensus 35 ~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 96 (425)
T PRK05431 35 EERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAEL 96 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355678889999999999999999875443 23466677778888888777777665544
No 77
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=43.82 E-value=77 Score=29.22 Aligned_cols=39 Identities=21% Similarity=0.287 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 86 WKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRV 124 (341)
Q Consensus 86 ~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRL 124 (341)
+.|=+.||.+...+..||..|||-...-..++..++++|
T Consensus 28 EeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 28 EEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 346678888888888888888888777777777777775
No 78
>PRK00295 hypothetical protein; Provisional
Probab=43.80 E-value=1.5e+02 Score=23.11 Aligned_cols=44 Identities=18% Similarity=0.120 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 84 ALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGM 127 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~ 127 (341)
.|+..+.-.-.-...|...|.+..++...++.++..|.+|++.+
T Consensus 9 ~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 9 ELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555556666667766666677777777777777654
No 79
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=43.62 E-value=1.7e+02 Score=30.80 Aligned_cols=48 Identities=17% Similarity=0.281 Sum_probs=33.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 81 DHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGME 128 (341)
Q Consensus 81 ~~~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~E 128 (341)
....|..+|..++.+...+..+|.+.......+...+..++.++...+
T Consensus 60 ~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~ 107 (420)
T COG4942 60 QRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALE 107 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Confidence 345677777777777777777777777777777777777766665444
No 80
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=43.15 E-value=1.9e+02 Score=24.23 Aligned_cols=41 Identities=22% Similarity=0.202 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 93 KAGKNALTQELLKL--RQYQETADNKLLLLRDRVQGMEKSQQQ 133 (341)
Q Consensus 93 KrDq~~L~qEL~rL--RQqqq~~~~el~~leeRLq~~EqrQQQ 133 (341)
.+-...+.+++..| +++-..+..++..|+.+++.++.+-+.
T Consensus 48 ~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~ 90 (106)
T PF10805_consen 48 DRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQG 90 (106)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 44444444444444 444444444444444444444444333
No 81
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=43.01 E-value=1.3e+02 Score=32.61 Aligned_cols=70 Identities=19% Similarity=0.210 Sum_probs=49.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHh--cCChH
Q 019406 81 DHSALWKEVENLKAGKNALTQELLKLRQYQ-------ETADNKLLLLRDRVQGMEKSQQ----QMLSFLVMAM--QNPSF 147 (341)
Q Consensus 81 ~~~~L~~EIe~LKrDq~~L~qEL~rLRQqq-------q~~~~el~~leeRLq~~EqrQQ----QMmsFLakv~--qnP~f 147 (341)
....+++|+..||+++..|..+|.++|.+. ....++++.|.++|..+.+-.. ....+.++-. .++.|
T Consensus 163 r~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~ 242 (546)
T KOG0977|consen 163 RIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREY 242 (546)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHH
Confidence 445788999999999999999999999753 3467888999999998874433 3334444443 34444
Q ss_pred HHh
Q 019406 148 LVQ 150 (341)
Q Consensus 148 l~q 150 (341)
...
T Consensus 243 F~~ 245 (546)
T KOG0977|consen 243 FKN 245 (546)
T ss_pred HHH
Confidence 433
No 82
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=42.49 E-value=94 Score=26.48 Aligned_cols=38 Identities=32% Similarity=0.336 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 84 ALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLR 121 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~le 121 (341)
.+..+|..||.....|..|=++|+-+++.+...+..+.
T Consensus 19 ~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 19 QLLEELEELKKQLQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555555555555555555555444444443
No 83
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=42.35 E-value=1.2e+02 Score=29.08 Aligned_cols=54 Identities=22% Similarity=0.225 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 83 SALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLS 136 (341)
Q Consensus 83 ~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMms 136 (341)
..++..+.+|-+-...-.+-+..|.++.+.+..++..|+..++.+....++|..
T Consensus 36 ~~~~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~ 89 (263)
T PRK10803 36 GSVEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 89 (263)
T ss_pred CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344566666666666655666677777777777777777777666555555544
No 84
>PRK09039 hypothetical protein; Validated
Probab=41.27 E-value=2e+02 Score=28.85 Aligned_cols=46 Identities=20% Similarity=0.152 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 85 LWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKS 130 (341)
Q Consensus 85 L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~Eqr 130 (341)
+..++..+|........+|.+|++|...+..++..++..|...|.+
T Consensus 121 l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~ 166 (343)
T PRK09039 121 LAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKR 166 (343)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444455555555555555555555555555544444
No 85
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=41.20 E-value=1.2e+02 Score=31.24 Aligned_cols=55 Identities=16% Similarity=0.192 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q 019406 86 WKEVENLKAGKNALTQELLKLRQYQETADNKLLL--LRDRVQGMEKSQQQMLSFLVM 140 (341)
Q Consensus 86 ~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~--leeRLq~~EqrQQQMmsFLak 140 (341)
.+|.-.||.++..|.+|...|+.+-..+++++.. +.+|.+.++..-..+...+-+
T Consensus 31 ~~e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l~s~V~E~vet~dv~~d~i~Kimnk 87 (420)
T PF07407_consen 31 IDENFALRMENHSLKKENNDLKIEVERLENEMLRSHVCEDVETNDVIYDKIVKIMNK 87 (420)
T ss_pred hhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 4577888888888888888888888888777764 677777665555544444433
No 86
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=41.20 E-value=90 Score=23.53 Aligned_cols=33 Identities=18% Similarity=0.223 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 88 EVENLKAGKNALTQELLKLRQYQETADNKLLLL 120 (341)
Q Consensus 88 EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~l 120 (341)
.+.+++.+...|..++..+++++..+..++..+
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555555555555544444333
No 87
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=41.05 E-value=1.8e+02 Score=23.86 Aligned_cols=56 Identities=20% Similarity=0.382 Sum_probs=38.6
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019406 88 EVENLKAG-KNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQ 143 (341)
Q Consensus 88 EIe~LKrD-q~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMmsFLakv~q 143 (341)
+++++.++ +..|.+++..|+.....++.++..+++....++.-=+-+-.++.-+|.
T Consensus 9 d~e~~~~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~ 65 (80)
T PF10224_consen 9 DIEKLEKEEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMS 65 (80)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444 778999999999999999988888888887666554444444444333
No 88
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=40.32 E-value=1.3e+02 Score=27.74 Aligned_cols=36 Identities=31% Similarity=0.326 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 84 ALWKEVENLKAGKNALTQELLKLRQYQETADNKLLL 119 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~ 119 (341)
.+..|+..|+..+..|..|+.+|.++++.+.....+
T Consensus 108 ~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~ 143 (161)
T TIGR02894 108 RLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQT 143 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555554444444444333
No 89
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=39.91 E-value=2e+02 Score=28.65 Aligned_cols=53 Identities=15% Similarity=0.243 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 88 EVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVM 140 (341)
Q Consensus 88 EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMmsFLak 140 (341)
|+.++|.....+..++...+++......++..++.++.....+.+.+..=++.
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ 257 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAE 257 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444544455555555555555555555666666665555554444444433
No 90
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=39.90 E-value=2.2e+02 Score=25.94 Aligned_cols=50 Identities=20% Similarity=0.367 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q 019406 85 LWKEVENLKAGKNALTQELLKLRQYQETADNK-------LLLLRDRVQGMEKSQQQM 134 (341)
Q Consensus 85 L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~e-------l~~leeRLq~~EqrQQQM 134 (341)
+..++..|+.....|..+|...+..++.+..+ +..+++|++.++.--+.+
T Consensus 121 l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~L 177 (194)
T PF08614_consen 121 LEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENREL 177 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443333 334444444444444333
No 91
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=39.27 E-value=1.1e+02 Score=26.36 Aligned_cols=39 Identities=28% Similarity=0.245 Sum_probs=26.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 82 HSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLL 120 (341)
Q Consensus 82 ~~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~l 120 (341)
...+..++..||.....|..|=++|+-+++.+...+..+
T Consensus 17 l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 17 LGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666777777777777777777777777777776655
No 92
>PRK10884 SH3 domain-containing protein; Provisional
Probab=38.86 E-value=2e+02 Score=27.05 Aligned_cols=43 Identities=19% Similarity=0.131 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 85 LWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGM 127 (341)
Q Consensus 85 L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~ 127 (341)
+...+...+.....|..|..+|+++.+.+.+++..++..+...
T Consensus 123 l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 123 MQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDK 165 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444455555555555555555555555554443
No 93
>PRK00736 hypothetical protein; Provisional
Probab=38.82 E-value=1.8e+02 Score=22.69 Aligned_cols=43 Identities=21% Similarity=0.170 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 84 ALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQG 126 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~ 126 (341)
.|+..+.-.-.-...|...|.+..++...+..++..|.+|+..
T Consensus 9 ~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 9 ELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555556666666666666666666777777777754
No 94
>PRK04406 hypothetical protein; Provisional
Probab=38.78 E-value=1.6e+02 Score=23.49 Aligned_cols=43 Identities=9% Similarity=0.094 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 84 ALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQG 126 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~ 126 (341)
.|+..+.-.-.-...|...|.+.+++...+..++..|.+|++.
T Consensus 15 ~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 15 DLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444445555555555665555555666666666666654
No 95
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=38.76 E-value=1.4e+02 Score=23.24 Aligned_cols=44 Identities=16% Similarity=0.219 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 84 ALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGM 127 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~ 127 (341)
.|+..+.-+-.....|...|.+..++...+..++..|.+|++.+
T Consensus 8 ~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 8 ELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555555666666666666666666666666666654
No 96
>PRK00846 hypothetical protein; Provisional
Probab=38.41 E-value=1.8e+02 Score=23.68 Aligned_cols=44 Identities=11% Similarity=0.074 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 85 LWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGME 128 (341)
Q Consensus 85 L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~E 128 (341)
|+..+.-.-.-...|...|.+.+++...+..++..|.+|++.++
T Consensus 18 LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 18 LETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33344444444555666666666666666666666777666543
No 97
>PLN02678 seryl-tRNA synthetase
Probab=38.35 E-value=1.7e+02 Score=30.64 Aligned_cols=59 Identities=19% Similarity=0.144 Sum_probs=40.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 81 DHSALWKEVENLKAGKNALTQELLKLRQY---QETADNKLLLLRDRVQGMEKSQQQMLSFLV 139 (341)
Q Consensus 81 ~~~~L~~EIe~LKrDq~~L~qEL~rLRQq---qq~~~~el~~leeRLq~~EqrQQQMmsFLa 139 (341)
....+..+++.|+.+++.+..+|..+... .+.+..++..+.+.+..+|...+.+-.=|.
T Consensus 41 ~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~ 102 (448)
T PLN02678 41 EWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALD 102 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678889999999999999999764432 223444566666666666666655544443
No 98
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=38.28 E-value=2.1e+02 Score=25.23 Aligned_cols=39 Identities=18% Similarity=0.328 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 87 KEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQ 125 (341)
Q Consensus 87 ~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq 125 (341)
..+..|......+..||..|.+.++.+..++..++++|.
T Consensus 21 ~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~ 59 (143)
T PF12718_consen 21 AKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLK 59 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444443
No 99
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=38.25 E-value=1.2e+02 Score=26.61 Aligned_cols=40 Identities=23% Similarity=0.333 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 86 WKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQ 125 (341)
Q Consensus 86 ~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq 125 (341)
..=++.|+.....|..+|.+|+++...+..++..|...|+
T Consensus 69 ~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~ 108 (119)
T COG1382 69 EEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQ 108 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678888888888888888888887777777766665
No 100
>PRK14127 cell division protein GpsB; Provisional
Probab=37.95 E-value=1e+02 Score=26.57 Aligned_cols=39 Identities=15% Similarity=0.167 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 88 EVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQG 126 (341)
Q Consensus 88 EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~ 126 (341)
=++.+-.|...|..|+.+|+.++..+..++..++.|+..
T Consensus 31 FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~ 69 (109)
T PRK14127 31 FLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSV 69 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344555677777777777777777777777777666653
No 101
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=37.95 E-value=2.7e+02 Score=27.42 Aligned_cols=51 Identities=24% Similarity=0.259 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 83 SALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQ 133 (341)
Q Consensus 83 ~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQ 133 (341)
..+..++..++.+...+..++..++.+.+.+...+..+.++...+...++.
T Consensus 212 ~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e 262 (325)
T PF08317_consen 212 EALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAE 262 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444443333
No 102
>PRK14160 heat shock protein GrpE; Provisional
Probab=37.76 E-value=3.4e+02 Score=25.85 Aligned_cols=45 Identities=22% Similarity=0.151 Sum_probs=35.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 82 HSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQG 126 (341)
Q Consensus 82 ~~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~ 126 (341)
...+..+++.|+.....|..++..++.+...+..+..+.+.|...
T Consensus 56 ~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~k 100 (211)
T PRK14160 56 IEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAK 100 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667888888888888888888888888888888888888763
No 103
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=37.54 E-value=1.8e+02 Score=27.53 Aligned_cols=57 Identities=14% Similarity=0.185 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 84 ALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVM 140 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMmsFLak 140 (341)
.|+.-|+.|..--.-+...+..-..+.-.+..++..|++|+..++.+-.+|+..|-.
T Consensus 83 nlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE~ 139 (189)
T TIGR02132 83 NLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILELLEG 139 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355556655333333333333222355568888999999999999999999999874
No 104
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=37.40 E-value=2e+02 Score=22.42 Aligned_cols=47 Identities=13% Similarity=0.271 Sum_probs=41.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 81 DHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGM 127 (341)
Q Consensus 81 ~~~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~ 127 (341)
....|..|+...|..+..+...|..-...+..+..++..|+.++..+
T Consensus 12 akQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 12 AKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44678889999999999999999999999999999999999888643
No 105
>PRK04325 hypothetical protein; Provisional
Probab=37.34 E-value=1.8e+02 Score=23.02 Aligned_cols=43 Identities=14% Similarity=0.126 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 84 ALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQG 126 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~ 126 (341)
.|+..+.-.-.-...|...|.+.+++...+..++..|.+|+..
T Consensus 13 ~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 13 ELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555556666665555556666666666666654
No 106
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=37.33 E-value=36 Score=34.39 Aligned_cols=54 Identities=22% Similarity=0.385 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 84 ALWKEVENLKAGKNALTQELLKLRQYQ----ETADNKLLLLRDRVQGMEKSQQQMLSF 137 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~rLRQqq----q~~~~el~~leeRLq~~EqrQQQMmsF 137 (341)
.|..||+.||+.+.....++..+.... ..+..++..+++|+..+|.+...|-.-
T Consensus 109 elkkEie~IKk~q~e~~~~i~~~~~~~~~~~~~l~~Ri~e~Eeris~lEd~~~~i~~~ 166 (370)
T PF02994_consen 109 ELKKEIENIKKNQSEMKLEIENLKKKLENIDESLNSRIDELEERISELEDRIEEIEQA 166 (370)
T ss_dssp ---------H-------------------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhH
Confidence 466788888887777777777666544 345677888888888888777766443
No 107
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=37.23 E-value=1.1e+02 Score=30.70 Aligned_cols=44 Identities=11% Similarity=0.174 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 84 ALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGM 127 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~ 127 (341)
.++.|++.-+.+-..|...+..|++++.....++..|++.+.++
T Consensus 68 ~~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~egl 111 (389)
T PF06216_consen 68 NKEFERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGL 111 (389)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34567777777777888888888888888888888887777654
No 108
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=37.18 E-value=74 Score=23.29 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 84 ALWKEVENLKAGKNALTQELLKLR 107 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~rLR 107 (341)
.+..++..|..++..|..++..|+
T Consensus 29 ~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 29 ELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555555555444
No 109
>PF11414 Suppressor_APC: Adenomatous polyposis coli tumour suppressor protein; PDB: 1M5I_A.
Probab=36.73 E-value=1.3e+02 Score=24.65 Aligned_cols=44 Identities=18% Similarity=0.256 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 84 ALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGM 127 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~ 127 (341)
.+...++.|-+++.+|.++|..+.+...=...+++.+.+|....
T Consensus 4 ~~lk~mkeLEqEkd~LLqgLe~~Er~r~Wy~~qL~~vq~rq~~L 47 (84)
T PF11414_consen 4 NMLKRMKELEQEKDVLLQGLEMEERERDWYQQQLQSVQERQRHL 47 (84)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567888999999999999999988877777777777776644
No 110
>PHA02562 46 endonuclease subunit; Provisional
Probab=36.63 E-value=2.1e+02 Score=29.42 Aligned_cols=66 Identities=9% Similarity=0.173 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhcCChHHHhhc
Q 019406 87 KEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQ------MLSFLVMAMQNPSFLVQLL 152 (341)
Q Consensus 87 ~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQ------MmsFLakv~qnP~fl~qLv 152 (341)
+.++.+++....|..++.+|.........++..+.+++..+...+.. ...++...+.+++|-.+++
T Consensus 351 ~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~~~~~i~~~~~~~g~~~~i~ 422 (562)
T PHA02562 351 QSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYHRGIVTDLLKDSGIKASII 422 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34445555556666666666666665666666666666655544433 3446666667777665444
No 111
>PRK02793 phi X174 lysis protein; Provisional
Probab=36.33 E-value=2e+02 Score=22.74 Aligned_cols=43 Identities=12% Similarity=0.098 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 84 ALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQG 126 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~ 126 (341)
.|+..+.-.-.-...|...|.+.+++...+..++..|.+|+..
T Consensus 12 ~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 12 ELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444455555555556666666666666666666666666654
No 112
>PLN02320 seryl-tRNA synthetase
Probab=36.29 E-value=1.9e+02 Score=30.95 Aligned_cols=87 Identities=21% Similarity=0.181 Sum_probs=50.0
Q ss_pred CCccccchhh-HHhhhhcCCCCCcchhhhcccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Q 019406 39 DGFVRDQKHL-LNNICRRKNTQGSEQRKSLQQSEKLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQ--YQETADN 115 (341)
Q Consensus 39 e~F~RGq~hL-LknIkRRK~~~s~~~q~s~qqq~~~~~~~~e~~~~~L~~EIe~LKrDq~~L~qEL~rLRQ--qqq~~~~ 115 (341)
-.|+|..++. -++|+||.- ...-. . --..+.....+..+++.|+.+++.+..+|..-++ +.+.+..
T Consensus 69 ~k~ir~n~~~v~~~l~~R~~-~~~vd--------~--l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~ 137 (502)
T PLN02320 69 FKWIRDNKEAVAINIRNRNS-NANLE--------L--VLELYENMLALQKEVERLRAERNAVANKMKGKLEPSERQALVE 137 (502)
T ss_pred HHHHHhCHHHHHHHHHhcCC-CcCHH--------H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHH
Confidence 3567777764 556666642 11000 0 0011224456788999999999999998865111 2334555
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019406 116 KLLLLRDRVQGMEKSQQQMLS 136 (341)
Q Consensus 116 el~~leeRLq~~EqrQQQMms 136 (341)
++..+.+++..+|...+.+-.
T Consensus 138 ~~k~lk~~i~~le~~~~~~~~ 158 (502)
T PLN02320 138 EGKNLKEGLVTLEEDLVKLTD 158 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666555544
No 113
>PRK02119 hypothetical protein; Provisional
Probab=35.98 E-value=2e+02 Score=22.82 Aligned_cols=42 Identities=12% Similarity=0.139 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 85 LWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQG 126 (341)
Q Consensus 85 L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~ 126 (341)
|+..+.-.-.-...|...|.+.+++...+..++..|.+|++.
T Consensus 14 LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 14 LEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444445555555555555555555666666666554
No 114
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=35.45 E-value=1e+02 Score=29.85 Aligned_cols=37 Identities=19% Similarity=0.231 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 85 LWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLR 121 (341)
Q Consensus 85 L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~le 121 (341)
+.++=+++|.-+..|..|+.+++++...+..++..++
T Consensus 84 VtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~ 120 (248)
T PF08172_consen 84 VTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLR 120 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666666555555554443
No 115
>PF15294 Leu_zip: Leucine zipper
Probab=35.12 E-value=2e+02 Score=28.64 Aligned_cols=46 Identities=20% Similarity=0.294 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 84 ALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEK 129 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~Eq 129 (341)
-|..||.+|+.++..|...|..+..+.-..-.+-..++..|..+..
T Consensus 129 ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 129 LLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677999999999999999998888776666555556665555444
No 116
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=35.01 E-value=2.4e+02 Score=24.86 Aligned_cols=42 Identities=26% Similarity=0.251 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 83 SALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRV 124 (341)
Q Consensus 83 ~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRL 124 (341)
..++.||..|.+-+..|..+|-++..+...+...+.....+.
T Consensus 31 ~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~ 72 (143)
T PF12718_consen 31 EQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRK 72 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 456667777777777777777777766555554444444433
No 117
>PF14282 FlxA: FlxA-like protein
Probab=34.97 E-value=2.4e+02 Score=23.59 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 85 LWKEVENLKAGKNALTQELLKLRQ 108 (341)
Q Consensus 85 L~~EIe~LKrDq~~L~qEL~rLRQ 108 (341)
....|+.|++....|..+|..|..
T Consensus 17 ~~~~I~~L~~Qi~~Lq~ql~~l~~ 40 (106)
T PF14282_consen 17 SDSQIEQLQKQIKQLQEQLQELSQ 40 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 367899999999999999998887
No 118
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=34.31 E-value=3.1e+02 Score=23.73 Aligned_cols=47 Identities=21% Similarity=0.343 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 83 SALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEK 129 (341)
Q Consensus 83 ~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~Eq 129 (341)
..+..++++|..+...|..++..+.++......+..++...++..+.
T Consensus 62 ~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~ 108 (151)
T PF11559_consen 62 RRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEA 108 (151)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555555555555544433
No 119
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=33.17 E-value=3.5e+02 Score=24.01 Aligned_cols=20 Identities=20% Similarity=0.429 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019406 88 EVENLKAGKNALTQELLKLR 107 (341)
Q Consensus 88 EIe~LKrDq~~L~qEL~rLR 107 (341)
++..++.....+.+|+.+++
T Consensus 131 ~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 131 RLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444
No 120
>PF05524 PEP-utilisers_N: PEP-utilising enzyme, N-terminal; InterPro: IPR008731 This sequence identifies proteins which are a component of the phosphoenolpyruvate:sugar phosphotransferase system (PTS), a major carbohydrate active transport system. The PTS system is found throughout the bacterial kingdom, and is responsible for the coupled phosphorylation and translocation of numerous sugars across the cytoplasmic membrane []. This entry represents the N-terminal domain of enzyme I (EIN) which transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) which in turn phosphorylates a group of membrane-associated proteins, known as enzyme II. The N-terminal domain of EI (EIN) extends from residues 1 to 259 and can be phosphorylated in a fully reversible manner by phosphorylated HPr. EIN, however, cannot be autophosphorylated by PEP [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0008965 phosphoenolpyruvate-protein phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2WQD_A 2XDF_B 2HWG_A 3EZB_A 2L5H_A 3EZA_A 1EZB_A 2EZA_A 1EZA_A 1EZC_A ....
Probab=32.94 E-value=78 Score=26.30 Aligned_cols=59 Identities=15% Similarity=0.290 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCChHHHhhcCccc
Q 019406 84 ALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGME-KSQQQMLSFLVMAMQNPSFLVQLLQPKE 156 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~E-qrQQQMmsFLakv~qnP~fl~qLvqq~e 156 (341)
.+..|+++|..-......||.. +.+++...- .....|+..-..++++|.|...+...-.
T Consensus 32 ~~~~E~~rl~~Al~~~~~eL~~--------------l~~~~~~~~~~~~a~If~ah~~~L~D~~l~~~v~~~I~ 91 (123)
T PF05524_consen 32 DIEAEIERLEQALEKAREELEQ--------------LAERAESKLGEEEAAIFEAHLMMLEDPELIDEVEELIR 91 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHCHSSCTHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHhccccHHHHHHHHHHHhcCHhHHHHHHHHHh
Confidence 3444555555555555444444 444433221 2223689999999999999988765433
No 121
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=32.70 E-value=2.7e+02 Score=25.62 Aligned_cols=22 Identities=14% Similarity=0.166 Sum_probs=13.9
Q ss_pred cCCccccchhhHHhhhhcCCCC
Q 019406 38 NDGFVRDQKHLLNNICRRKNTQ 59 (341)
Q Consensus 38 Ne~F~RGq~hLLknIkRRK~~~ 59 (341)
|-.|-...-..|+.|+|-+...
T Consensus 35 ~R~y~~~dl~~L~~I~~l~~~G 56 (175)
T PRK13182 35 HYIFTEEDLQLLEYVKSQIEEG 56 (175)
T ss_pred CEEECHHHHHHHHHHHHHHHcC
Confidence 3344444567899999876543
No 122
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=32.63 E-value=3.8e+02 Score=24.33 Aligned_cols=44 Identities=16% Similarity=0.207 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 85 LWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGME 128 (341)
Q Consensus 85 L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~E 128 (341)
+..+++.++.........|..|+.+...+..++..+.+.++...
T Consensus 100 ~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~ 143 (194)
T PF08614_consen 100 LNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKN 143 (194)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555555555555555554433
No 123
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=32.50 E-value=2e+02 Score=23.58 Aligned_cols=44 Identities=18% Similarity=0.241 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 84 ALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGM 127 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~ 127 (341)
....-+..|......|..++.++..+...+..++..++.+++.+
T Consensus 60 ~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 60 EKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777888888899999999999999999998888888754
No 124
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=32.10 E-value=2.5e+02 Score=24.01 Aligned_cols=47 Identities=21% Similarity=0.294 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 84 ALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKS 130 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~Eqr 130 (341)
.+.+-++.|++....|...+.++.++...+..++..+.+.++.+.++
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 137 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQE 137 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777777777777777777766666666655443
No 125
>PF04325 DUF465: Protein of unknown function (DUF465); InterPro: IPR007420 Family members are found in small bacterial proteins, and also in the heavy chains of eukaryotic myosin and kinesin, C-terminal of the motor domain. Members of this family may form coiled coil structures.; PDB: 1ZHC_A.
Probab=32.06 E-value=80 Score=22.86 Aligned_cols=24 Identities=33% Similarity=0.371 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 86 WKEVENLKAGKNALTQELLKLRQY 109 (341)
Q Consensus 86 ~~EIe~LKrDq~~L~qEL~rLRQq 109 (341)
..++.+||+.+-.|..||.++.+|
T Consensus 26 d~~l~~LKk~kL~LKDei~~ll~q 49 (49)
T PF04325_consen 26 DEELERLKKEKLRLKDEIYRLLRQ 49 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 347899999999999999887654
No 126
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=32.05 E-value=2.9e+02 Score=24.85 Aligned_cols=47 Identities=19% Similarity=0.221 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 84 ALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKS 130 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~Eqr 130 (341)
..++-++.|++....|...+.++.+..+.+..++..+.+-++...++
T Consensus 91 ~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~ 137 (145)
T COG1730 91 SADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQK 137 (145)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666666666666555555555544433
No 127
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=31.70 E-value=3.3e+02 Score=23.36 Aligned_cols=36 Identities=22% Similarity=0.211 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 86 WKEVENLKAGKNALTQELLKLRQYQETADNKLLLLR 121 (341)
Q Consensus 86 ~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~le 121 (341)
..+++.+|.....+..++..|+++....|.++..+.
T Consensus 54 ~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~ 89 (150)
T PF07200_consen 54 EPELEELRSQLQELYEELKELESEYQEKEQQQDELS 89 (150)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555554443
No 128
>COG1345 FliD Flagellar capping protein [Cell motility and secretion]
Probab=31.32 E-value=2.3e+02 Score=30.12 Aligned_cols=56 Identities=20% Similarity=0.243 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 83 SALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMA 141 (341)
Q Consensus 83 ~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMmsFLakv 141 (341)
..|..++..|.++...+...+. ..++.+|.+...|.+.+..|...+..|..||..+
T Consensus 425 ~~l~~~i~~l~~~i~~~~~rl~---~~e~~~~~qf~~m~~~~~~m~sq~~~L~q~l~~~ 480 (483)
T COG1345 425 DSLNKQIKSLDKDIKSLDKRLE---AAEERYKTQFNTLDDMMTQMNSQSSYLTQQLVSV 480 (483)
T ss_pred cchhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4677788888888888886555 4566678888888888888888888888887654
No 129
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=31.18 E-value=2e+02 Score=31.26 Aligned_cols=52 Identities=17% Similarity=0.222 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 84 ALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQML 135 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMm 135 (341)
+...|+.+.-.++..|+.+|+.++++..-+..+...|.+.|+.+-+.|.+|-
T Consensus 223 ~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~ 274 (596)
T KOG4360|consen 223 SKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLT 274 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3445666667777788888888888888888888888888888888887763
No 130
>PRK06798 fliD flagellar capping protein; Validated
Probab=30.81 E-value=2.2e+02 Score=29.58 Aligned_cols=8 Identities=0% Similarity=-0.097 Sum_probs=4.5
Q ss_pred chHHhhhc
Q 019406 12 LSLKQLLT 19 (341)
Q Consensus 12 SFvRQLNm 19 (341)
.||...|.
T Consensus 270 ~FV~aYN~ 277 (440)
T PRK06798 270 KMVDEYNK 277 (440)
T ss_pred HHHHHHHH
Confidence 45665554
No 131
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=30.77 E-value=4.4e+02 Score=24.45 Aligned_cols=31 Identities=26% Similarity=0.468 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 87 KEVENLKAGKNALTQELLKLRQYQETADNKL 117 (341)
Q Consensus 87 ~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el 117 (341)
.+++.++.....|..++.+++++.+....++
T Consensus 63 ~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l 93 (302)
T PF10186_consen 63 REIEELRERLERLRERIERLRKRIEQKRERL 93 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443333333
No 132
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.73 E-value=3e+02 Score=22.51 Aligned_cols=38 Identities=11% Similarity=0.211 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 94 AGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQ 131 (341)
Q Consensus 94 rDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQ 131 (341)
.....|.-||..|+..+..+.++.+.+.+.....++.-
T Consensus 18 dTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~en 55 (79)
T COG3074 18 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREALEREN 55 (79)
T ss_pred HHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666655555554444444444433
No 133
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=30.72 E-value=3.8e+02 Score=25.56 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 83 SALWKEVENLKAGKNALTQELLKLRQ 108 (341)
Q Consensus 83 ~~L~~EIe~LKrDq~~L~qEL~rLRQ 108 (341)
+....||..||..+..|..|=.+||.
T Consensus 51 Q~hl~EIR~LKe~NqkLqedNqELRd 76 (195)
T PF10226_consen 51 QQHLNEIRGLKEVNQKLQEDNQELRD 76 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456788888777777777666664
No 134
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=30.61 E-value=3.9e+02 Score=23.77 Aligned_cols=66 Identities=18% Similarity=0.169 Sum_probs=48.2
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 76 PCEKIDHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMA 141 (341)
Q Consensus 76 ~~~e~~~~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMmsFLakv 141 (341)
.+..+++..|.-|+..|......=..||.+|+.....+-+-+...++++.........+-.-|...
T Consensus 38 ~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~ 103 (177)
T PF13870_consen 38 GLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDR 103 (177)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666666777777777777788888888888888888888888887777766666555543
No 135
>COG5481 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=30.53 E-value=1.7e+02 Score=23.21 Aligned_cols=28 Identities=18% Similarity=0.216 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 95 GKNALTQELLKLRQYQETADNKLLLLRD 122 (341)
Q Consensus 95 Dq~~L~qEL~rLRQqqq~~~~el~~lee 122 (341)
|+..+...+.+|||+......-+.+|.+
T Consensus 5 dqaeirl~~arLrqeH~D~DaaInAmi~ 32 (67)
T COG5481 5 DQAEIRLTLARLRQEHADFDAAINAMIA 32 (67)
T ss_pred cHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3444667777888877777776666655
No 136
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=30.49 E-value=3.7e+02 Score=27.82 Aligned_cols=47 Identities=19% Similarity=0.275 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 88 EVENLKAGKNALTQELLKLRQYQ----ETADNKLLLLRDRVQGMEKSQQQM 134 (341)
Q Consensus 88 EIe~LKrDq~~L~qEL~rLRQqq----q~~~~el~~leeRLq~~EqrQQQM 134 (341)
+.......+..|.+++..+.+++ +.+........+++...|.+|+++
T Consensus 61 q~~~~~~~~~~L~~ql~~~~~~~~~~~~~l~~~~~~~~~~l~~~e~~~~~l 111 (390)
T PRK10920 61 QAQNQTATNDALANQLTALQKAQESQKQELEGILKQQAKALDQANRQQAAL 111 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334555566666665554442 223333444444445444444443
No 137
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=30.45 E-value=1.2e+02 Score=21.04 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 83 SALWKEVENLKAGKNALTQELLKLRQ 108 (341)
Q Consensus 83 ~~L~~EIe~LKrDq~~L~qEL~rLRQ 108 (341)
..|.+|.+.||+.++.|..-|..||.
T Consensus 4 qkL~sekeqLrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 4 QKLISEKEQLRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45777888888888888777766653
No 138
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=30.23 E-value=1.4e+02 Score=31.78 Aligned_cols=43 Identities=5% Similarity=0.115 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 96 KNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFL 138 (341)
Q Consensus 96 q~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMmsFL 138 (341)
...|.++|..||++.+.+..+...++++|..+|...+++-.=+
T Consensus 78 asELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 78 AAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3446666666666666666666666666666655555444333
No 139
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=29.69 E-value=1.7e+02 Score=27.93 Aligned_cols=37 Identities=22% Similarity=0.362 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 88 EVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRV 124 (341)
Q Consensus 88 EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRL 124 (341)
|=+.||.+...+..||+.|||-.-.-..++..+.++|
T Consensus 45 Ekeelr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKL 81 (208)
T KOG4010|consen 45 EKEELRTELAKVEEEIVTLRQVLAAKERHAAELKRKL 81 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5556666666666666666665555444455554444
No 140
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=29.60 E-value=3.1e+02 Score=25.33 Aligned_cols=42 Identities=24% Similarity=0.268 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 85 LWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQG 126 (341)
Q Consensus 85 L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~ 126 (341)
|-..++..+..+..|..||.+|+++...+..++..=+.+.+.
T Consensus 86 LReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ 127 (182)
T PF15035_consen 86 LREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWRE 127 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888999999999999999888887777766555553
No 141
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=29.57 E-value=3.5e+02 Score=29.45 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=15.3
Q ss_pred HHHhhhhccchhhhhhcchhHHHHHHHHHhhh
Q 019406 304 LQELDKSQNFDNELENARHLEFLTQKIELLAS 335 (341)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (341)
+-+|||.+-.+..-|=.+..+-|.+.++-+|+
T Consensus 428 v~qkEKEql~~EkQeL~~yi~~Le~r~~~~~~ 459 (546)
T PF07888_consen 428 VAQKEKEQLQEEKQELLEYIERLEQRLDKVAD 459 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34455544444444444444445555555544
No 142
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=29.39 E-value=1.8e+02 Score=28.64 Aligned_cols=44 Identities=27% Similarity=0.306 Sum_probs=38.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 83 SALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQG 126 (341)
Q Consensus 83 ~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~ 126 (341)
.+|-.|+..++.++..|.+||.-+-.+|+.++.-+-.++..+..
T Consensus 116 ~~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L~~lE~k~~~ 159 (254)
T KOG2196|consen 116 SGLYNEVVKVKLDQKRLDQELEFILSQQQELEDLLDPLETKLEL 159 (254)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46778999999999999999999999999999888888887765
No 143
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=29.08 E-value=4e+02 Score=24.21 Aligned_cols=48 Identities=17% Similarity=0.329 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019406 95 GKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQ 143 (341)
Q Consensus 95 Dq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMmsFLakv~q 143 (341)
....|..-|..|.++ +....++..++..+...+.+.+.++.-|..+-+
T Consensus 10 ~d~~L~~~L~~l~~h-q~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~ 57 (188)
T PF10018_consen 10 ADDELSSALEELQEH-QENQARIQQLRAEIEELDEQIRDILKQLKEARK 57 (188)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444333 333555666666666666655555555555443
No 144
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=29.05 E-value=1.1e+02 Score=24.93 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 85 LWKEVENLKAGKNALTQELLKLRQ 108 (341)
Q Consensus 85 L~~EIe~LKrDq~~L~qEL~rLRQ 108 (341)
|..|..+||++...|..||..+++
T Consensus 5 i~eEn~~Lk~eiqkle~ELq~~~~ 28 (76)
T PF07334_consen 5 IQEENARLKEEIQKLEAELQQNKR 28 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444333
No 145
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=28.56 E-value=55 Score=34.84 Aligned_cols=30 Identities=20% Similarity=0.378 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 85 LWKEVENLKAGKNALTQELLKLRQYQETADN 115 (341)
Q Consensus 85 L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~ 115 (341)
..++++.++ ..+.|.+||.+|++|+..+..
T Consensus 23 ~~~~~~~~q-kie~L~kql~~Lk~q~~~l~~ 52 (489)
T PF11853_consen 23 MADDIDLLQ-KIEALKKQLEELKAQQDDLND 52 (489)
T ss_pred hhhhhHHHH-HHHHHHHHHHHHHHhhccccc
Confidence 344555555 666666666666666654333
No 146
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=28.46 E-value=32 Score=29.22 Aligned_cols=41 Identities=27% Similarity=0.320 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 84 ALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRV 124 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRL 124 (341)
.|..++..++..+..|.++|.-+..+|..+..-|..+++.+
T Consensus 61 ~L~~~v~~~~~~Q~~ld~~L~~ie~qQ~eLe~~L~~lE~~~ 101 (116)
T PF05064_consen 61 KLYSEVQKAESEQKRLDQELDFIEAQQKELEELLDPLEKQV 101 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666655555544444444333
No 147
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=28.30 E-value=2.2e+02 Score=25.69 Aligned_cols=47 Identities=23% Similarity=0.241 Sum_probs=41.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 81 DHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGM 127 (341)
Q Consensus 81 ~~~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~ 127 (341)
....|...++.|.+-...|.++|.+|-+..+.+..+++.+.++....
T Consensus 95 Aie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~~~~ 141 (145)
T COG1730 95 AIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQAAA 141 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44578899999999999999999999999999999998888877654
No 148
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=28.26 E-value=2.2e+02 Score=30.43 Aligned_cols=43 Identities=21% Similarity=0.229 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 83 SALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQ 125 (341)
Q Consensus 83 ~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq 125 (341)
..|..++..++++...|..+=.+|+.+++.+..+-..+.+|++
T Consensus 62 rTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~ 104 (472)
T TIGR03752 62 RTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQ 104 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 5677788888877777777777777777777777666666665
No 149
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=28.14 E-value=5.6e+02 Score=25.43 Aligned_cols=27 Identities=33% Similarity=0.455 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 84 ALWKEVENLKAGKNALTQELLKLRQYQ 110 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~rLRQqq 110 (341)
.+..|++.|.++...|.+|+..++.+-
T Consensus 61 ~l~~eL~~LE~e~~~l~~el~~le~e~ 87 (314)
T PF04111_consen 61 ELLQELEELEKEREELDQELEELEEEL 87 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555544433
No 150
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=27.85 E-value=2.5e+02 Score=22.23 Aligned_cols=41 Identities=22% Similarity=0.281 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 85 LWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQ 125 (341)
Q Consensus 85 L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq 125 (341)
...-++.|+.+...+..+|.+|+.+...+..++..++..|.
T Consensus 60 ~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 60 KEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677788888888888888887777777777766664
No 151
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=27.83 E-value=2.7e+02 Score=30.20 Aligned_cols=47 Identities=21% Similarity=0.337 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 88 EVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQM 134 (341)
Q Consensus 88 EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQM 134 (341)
|.+.|.+.+..|..++..|+.+...+..++...+++...+++.++.+
T Consensus 151 E~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel 197 (546)
T PF07888_consen 151 EKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKEL 197 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444433
No 152
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=27.75 E-value=2.9e+02 Score=21.37 Aligned_cols=48 Identities=6% Similarity=0.162 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 88 EVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQML 135 (341)
Q Consensus 88 EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMm 135 (341)
.|++|-.|...|...+..|.++...+...+++..+-....-+|...+.
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a 51 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNIA 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 567777777777777777777777777777777766666666655543
No 153
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=27.71 E-value=2.4e+02 Score=29.95 Aligned_cols=54 Identities=19% Similarity=0.143 Sum_probs=36.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 81 DHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFL 138 (341)
Q Consensus 81 ~~~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMmsFL 138 (341)
....+..||.++|+|+..|.+=|.|-+-.-+.. .+|.+|++...+..-++.+-.
T Consensus 414 ~lv~~edeirrlkrdm~klkq~l~RN~gd~v~s----~~lqe~L~ev~~~Lasl~aqe 467 (486)
T KOG2185|consen 414 ALVEYEDEIRRLKRDMLKLKQMLNRNKGDLVVS----EALQERLKEVRKALASLLAQE 467 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 345678899999999999999998877654433 456677776544433443333
No 154
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=27.56 E-value=2.3e+02 Score=30.01 Aligned_cols=49 Identities=27% Similarity=0.365 Sum_probs=40.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 81 DHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEK 129 (341)
Q Consensus 81 ~~~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~Eq 129 (341)
....+..|.+.|+++...|.++|.++..+++.+..++..++.|-....+
T Consensus 177 ~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e 225 (447)
T KOG2751|consen 177 SEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNE 225 (447)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356778999999999999999999999999999998888777654433
No 155
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=27.46 E-value=2.8e+02 Score=23.88 Aligned_cols=44 Identities=18% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 85 LWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGME 128 (341)
Q Consensus 85 L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~E 128 (341)
|...|+..-.....|..|+-..=...+.+...|+.|..||..+|
T Consensus 58 L~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRLD~~E 101 (102)
T PF01519_consen 58 LTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRLDKME 101 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
No 156
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=27.42 E-value=4.2e+02 Score=23.19 Aligned_cols=44 Identities=18% Similarity=0.105 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 84 ALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGM 127 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~ 127 (341)
.++..+....+....|..|+.+.....+.....++.|+..++..
T Consensus 31 ~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~ 74 (160)
T PF13094_consen 31 ALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKAL 74 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444555555555555555444444444444433
No 157
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=27.38 E-value=92 Score=24.38 Aligned_cols=31 Identities=26% Similarity=0.232 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 84 ALWKEVENLKAGKNALTQELLKLRQYQETAD 114 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~ 114 (341)
++-.||+-||.....|......|+.+|..+.
T Consensus 11 AVrEEVevLK~~I~eL~~~n~~Le~EN~~Lk 41 (59)
T PF01166_consen 11 AVREEVEVLKEQIAELEERNSQLEEENNLLK 41 (59)
T ss_dssp T-TTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788888888878777777777776543
No 158
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=27.36 E-value=2.7e+02 Score=20.83 Aligned_cols=33 Identities=21% Similarity=0.236 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 88 EVENLKAGKNALTQELLKLRQYQETADNKLLLL 120 (341)
Q Consensus 88 EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~l 120 (341)
.++.|......|..+...|+.+...+..++..|
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444443333
No 159
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=27.11 E-value=3.9e+02 Score=23.26 Aligned_cols=43 Identities=14% Similarity=0.187 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 84 ALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQG 126 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~ 126 (341)
.+.+.+..|.+........|.++|+.+..+.+++..+-.+++.
T Consensus 55 ~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~ei 97 (141)
T PF13874_consen 55 EINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLRKQEI 97 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566665555666666666666666666655555555543
No 160
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=27.02 E-value=95 Score=25.75 Aligned_cols=32 Identities=28% Similarity=0.277 Sum_probs=25.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 81 DHSALWKEVENLKAGKNALTQELLKLRQYQET 112 (341)
Q Consensus 81 ~~~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~ 112 (341)
++..++.|...|+..-.....||..||++|+-
T Consensus 37 ~R~~lE~E~~~l~~~l~~~E~eL~~LrkENrK 68 (85)
T PF15188_consen 37 ARRSLEKELNELKEKLENNEKELKLLRKENRK 68 (85)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHhhhh
Confidence 56678888888888888888888888887753
No 161
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=26.97 E-value=1.5e+02 Score=28.10 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 87 KEVENLKAGKNALTQELLKLRQYQETA 113 (341)
Q Consensus 87 ~EIe~LKrDq~~L~qEL~rLRQqqq~~ 113 (341)
.....++.++..|.+|+..|+.++..+
T Consensus 69 ~~~~~l~~en~~L~~e~~~l~~~~~~~ 95 (276)
T PRK13922 69 ASLFDLREENEELKKELLELESRLQEL 95 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666666666655543
No 162
>PRK14143 heat shock protein GrpE; Provisional
Probab=26.95 E-value=5e+02 Score=25.13 Aligned_cols=40 Identities=20% Similarity=0.176 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 86 WKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQ 125 (341)
Q Consensus 86 ~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq 125 (341)
..++..|+.+...|..++..++.++..+..+..+.+.|.+
T Consensus 66 ~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~ 105 (238)
T PRK14143 66 AARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTS 105 (238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555666666666666666666666666664
No 163
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=26.73 E-value=2.3e+02 Score=26.90 Aligned_cols=20 Identities=35% Similarity=0.290 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019406 85 LWKEVENLKAGKNALTQELL 104 (341)
Q Consensus 85 L~~EIe~LKrDq~~L~qEL~ 104 (341)
+.+|.++||+++..|..++.
T Consensus 74 l~~en~~L~~e~~~l~~~~~ 93 (276)
T PRK13922 74 LREENEELKKELLELESRLQ 93 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 164
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=26.71 E-value=3.7e+02 Score=24.21 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 101 QELLKLRQYQETADNKLLLLRDRV 124 (341)
Q Consensus 101 qEL~rLRQqqq~~~~el~~leeRL 124 (341)
.||++|+|.-.++.++=-+..=|+
T Consensus 47 eEVvrlKQrRRTLKNRGYA~sCR~ 70 (135)
T KOG4196|consen 47 EEVVRLKQRRRTLKNRGYAQSCRV 70 (135)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHH
Confidence 344444444444444433333333
No 165
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=26.59 E-value=4.4e+02 Score=29.07 Aligned_cols=44 Identities=25% Similarity=0.313 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 96 KNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLV 139 (341)
Q Consensus 96 q~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMmsFLa 139 (341)
+..|.+||.+||-+.+.+..++..++.-+...|...++|..-+.
T Consensus 81 r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~ 124 (632)
T PF14817_consen 81 RRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKIS 124 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555555555555544333
No 166
>PF12308 Noelin-1: Neurogenesis glycoprotein; InterPro: IPR022082 This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with PF02191 from PFAM. There are two conserved sequence motifs: SAQ and VQN. Noelin-1 is a glycoprotein which is secreted mainly by postmitotic neurogenic tissues in the developing central and peripheral nervous systems, first appearing after neural tube closure. It is likely that it forms large multimeric complexes.It has a divergent function in neurogenesis. In animal caps neuralized by expression of noggin, co-expression of Noelin-1 causes expression of neuronal differentiation markers several stages before neurogenesis normally occurs in this tissue. Finally, only secreted forms of the protein can activate sensory marker expression, while all forms of the protein can induce early neurogenesis.
Probab=26.56 E-value=3.2e+02 Score=23.50 Aligned_cols=54 Identities=15% Similarity=0.260 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 83 SALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLS 136 (341)
Q Consensus 83 ~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMms 136 (341)
..|.+.|..+-.-.++|...-.+==|.-+.++.+|..|+.+++..|...+.+++
T Consensus 43 rqllekVqNmSqsievL~~RT~rdlqyv~~~E~~mk~l~~k~~~~e~~~~~l~~ 96 (101)
T PF12308_consen 43 RQLLEKVQNMSQSIEVLDLRTQRDLQYVRKMETQMKGLESKFRQVEDDRKSLSA 96 (101)
T ss_pred HHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHhcCHHHhhh
Confidence 456677777777766666555544466688899999999999988887776653
No 167
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=26.44 E-value=3.3e+02 Score=24.59 Aligned_cols=26 Identities=19% Similarity=0.243 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 88 EVENLKAGKNALTQELLKLRQYQETA 113 (341)
Q Consensus 88 EIe~LKrDq~~L~qEL~rLRQqqq~~ 113 (341)
|++.|+.++..+...|.+-+++.|.+
T Consensus 2 ~~~~Le~ek~~~~~rI~~K~~~LqEL 27 (142)
T PF08781_consen 2 ECEELEEEKQRRRERIKKKKEQLQEL 27 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777776666666555554444
No 168
>PRK10698 phage shock protein PspA; Provisional
Probab=26.23 E-value=3.8e+02 Score=25.25 Aligned_cols=43 Identities=19% Similarity=0.105 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 85 LWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGM 127 (341)
Q Consensus 85 L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~ 127 (341)
|..+++........|...+.+|+...+.+..+-..|..|.+..
T Consensus 104 l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A 146 (222)
T PRK10698 104 LEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAA 146 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444444433
No 169
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=26.18 E-value=2.7e+02 Score=29.31 Aligned_cols=40 Identities=28% Similarity=0.384 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 87 KEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQG 126 (341)
Q Consensus 87 ~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~ 126 (341)
.|++.|+.+...+..|+..|+.|.+.+..+++.++.++.+
T Consensus 274 ~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~ 313 (511)
T PF09787_consen 274 IELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEG 313 (511)
T ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4688899999999999999999998888888888877765
No 170
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=26.15 E-value=5.6e+02 Score=24.42 Aligned_cols=46 Identities=20% Similarity=0.263 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 88 EVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQ 133 (341)
Q Consensus 88 EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQ 133 (341)
++..+|.+...+...+..|+.+...+..+...++.++..++.+...
T Consensus 210 ~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~ 255 (312)
T PF00038_consen 210 ELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDE 255 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444333
No 171
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=26.14 E-value=2.8e+02 Score=30.72 Aligned_cols=43 Identities=28% Similarity=0.367 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 83 SALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQ 125 (341)
Q Consensus 83 ~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq 125 (341)
..+..-+++|+.++..|..+|.+++.....+..++..+..+++
T Consensus 425 ~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~ 467 (652)
T COG2433 425 KKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR 467 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777777777777777777777776666665
No 172
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=26.06 E-value=3.9e+02 Score=24.04 Aligned_cols=15 Identities=27% Similarity=0.490 Sum_probs=7.7
Q ss_pred CccccchhhHHhhhh
Q 019406 40 GFVRDQKHLLNNICR 54 (341)
Q Consensus 40 ~F~RGq~hLLknIkR 54 (341)
||-..|-..+-.+-|
T Consensus 15 Gft~~QAe~i~~~l~ 29 (177)
T PF07798_consen 15 GFTEEQAEAIMKALR 29 (177)
T ss_pred CCCHHHHHHHHHHHH
Confidence 455556555544444
No 173
>smart00338 BRLZ basic region leucin zipper.
Probab=25.81 E-value=2.9e+02 Score=20.67 Aligned_cols=28 Identities=21% Similarity=0.255 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 89 VENLKAGKNALTQELLKLRQYQETADNK 116 (341)
Q Consensus 89 Ie~LKrDq~~L~qEL~rLRQqqq~~~~e 116 (341)
+..|......|..+...|+.+...+..+
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~l~~e 55 (65)
T smart00338 28 IEELERKVEQLEAENERLKKEIERLRRE 55 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 174
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=25.47 E-value=3.1e+02 Score=28.64 Aligned_cols=35 Identities=14% Similarity=-0.006 Sum_probs=24.0
Q ss_pred CCcccccCCc-chHHhhhcCCCCCCccccCCCCceeecCC
Q 019406 2 SLKLNYLKYQ-LSLKQLLTFSFSQGFRKIDTDRWEFANDG 40 (341)
Q Consensus 2 slLPkYFKHs-SFvRQLNm~l~~YGFRKVdpDrWEFANe~ 40 (341)
.|+|-.|-.. +++||.+- =|-.-.+|++-.|.||.
T Consensus 114 ~i~Pl~~sPrFtYfR~~~~----~~~~~~~p~~~~FG~E~ 149 (475)
T PF10359_consen 114 KILPLAYSPRFTYFRQTDY----GDKYQGDPKRSSFGNEP 149 (475)
T ss_pred EEeecccCCceEEEeecCC----CCcCCCCCCcCcCCCCC
Confidence 4677777777 99999985 23334567666677665
No 175
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=25.34 E-value=3e+02 Score=30.30 Aligned_cols=61 Identities=13% Similarity=0.171 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHhhcCc
Q 019406 94 AGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQNPSFLVQLLQP 154 (341)
Q Consensus 94 rDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMmsFLakv~qnP~fl~qLvqq 154 (341)
.+...+...+..|+.+.+.+......=.+.++..+.++|+|+.|=..+.+.-..+..|+..
T Consensus 358 le~~~l~A~l~~L~se~q~L~~~~~~r~e~~~~Lq~K~q~I~~frqlv~e~QeqIr~LiK~ 418 (632)
T PF14817_consen 358 LEVAGLKASLNALRSECQRLKEAAAERQEALRSLQAKWQRILDFRQLVSEKQEQIRALIKG 418 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455556666666666666666666666777777888888888776666666566555543
No 176
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=25.32 E-value=4.1e+02 Score=22.25 Aligned_cols=39 Identities=36% Similarity=0.483 Sum_probs=20.4
Q ss_pred hhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 83 SALWKEVENL--KAGKNALTQELLKLRQYQETADNKLLLLRDRVQGME 128 (341)
Q Consensus 83 ~~L~~EIe~L--KrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~E 128 (341)
..++.+++.| +.|...|..+|.+++ .++..++.+++++.
T Consensus 52 ~~lE~~l~~LPt~~dv~~L~l~l~el~-------G~~~~l~~~l~~v~ 92 (106)
T PF10805_consen 52 QALETKLEHLPTRDDVHDLQLELAELR-------GELKELSARLQGVS 92 (106)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHH
Confidence 3455555555 555555555555554 44445555555553
No 177
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=25.01 E-value=5.3e+02 Score=28.65 Aligned_cols=49 Identities=29% Similarity=0.409 Sum_probs=29.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 019406 81 DHSALWKEVENLKAGKNALTQELLKLRQYQET---ADNKLLLLRDRVQGMEK 129 (341)
Q Consensus 81 ~~~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~---~~~el~~leeRLq~~Eq 129 (341)
....|..+++.||+....|..+|.+++..-.. ...++.++..|+..++.
T Consensus 437 e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~ 488 (652)
T COG2433 437 ENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEK 488 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 44567777888888888888888777754322 22334444444444433
No 178
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=24.93 E-value=2.8e+02 Score=29.13 Aligned_cols=50 Identities=20% Similarity=0.282 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 84 ALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQ 133 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQ 133 (341)
.++..|+.++.+...|..|+.+....+..+..++..+++-++.+|--.|.
T Consensus 242 qvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh 291 (561)
T KOG1103|consen 242 QVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQH 291 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 45667888999999999999999999999999999999999999887664
No 179
>PF05149 Flagellar_rod: Paraflagellar rod protein; InterPro: IPR007824 This family consists of several eukaryotic paraflagellar rod component proteins. The eukaryotic flagellum represents one of the most complex macromolecular structures found in any organism and contains more than 250 proteins []. In addition to its locomotive role, the flagellum is probably involved in nutrient uptake since receptors for host low-density lipoproteins are localised on the flagellar membrane as well as on the flagellar pocket membrane [].; GO: 0005516 calmodulin binding, 0009434 microtubule-based flagellum
Probab=24.77 E-value=4.3e+02 Score=26.44 Aligned_cols=31 Identities=16% Similarity=0.098 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 97 NALTQELLKLRQYQETADNKLLLLRDRVQGM 127 (341)
Q Consensus 97 ~~L~qEL~rLRQqqq~~~~el~~leeRLq~~ 127 (341)
......+.+..++++.+|.+|..+.++|+..
T Consensus 48 ~~~~~~l~~n~e~q~~lw~~i~el~~~L~~l 78 (289)
T PF05149_consen 48 KESEKFLQKNEEQQQELWREIQELERELQDL 78 (289)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444445555544444444433
No 180
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=24.69 E-value=3.6e+02 Score=32.08 Aligned_cols=45 Identities=31% Similarity=0.364 Sum_probs=38.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 83 SALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGM 127 (341)
Q Consensus 83 ~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~ 127 (341)
..+..++..+|.+......+|.+++++.+.+..++..+++|+..+
T Consensus 545 ~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ 589 (1293)
T KOG0996|consen 545 DDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEA 589 (1293)
T ss_pred HHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888999999999999999999999999999998744
No 181
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=24.65 E-value=5.1e+02 Score=24.02 Aligned_cols=36 Identities=25% Similarity=0.379 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 90 ENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQ 125 (341)
Q Consensus 90 e~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq 125 (341)
..++.+...+...+..|+...+....++...++|+.
T Consensus 59 ~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~ 94 (302)
T PF10186_consen 59 QQLKREIEELRERLERLRERIERLRKRIEQKRERLE 94 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444443
No 182
>PF15456 Uds1: Up-regulated During Septation
Probab=24.52 E-value=3.4e+02 Score=23.70 Aligned_cols=24 Identities=38% Similarity=0.393 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 87 KEVENLKAGKNALTQELLKLRQYQ 110 (341)
Q Consensus 87 ~EIe~LKrDq~~L~qEL~rLRQqq 110 (341)
+||+.||++...|...+.-+|...
T Consensus 22 eEVe~LKkEl~~L~~R~~~lr~kl 45 (124)
T PF15456_consen 22 EEVEELKKELRSLDSRLEYLRRKL 45 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477777777777766666555544
No 183
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=24.45 E-value=3e+02 Score=29.50 Aligned_cols=48 Identities=17% Similarity=0.194 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 88 EVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQML 135 (341)
Q Consensus 88 EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMm 135 (341)
+++..|..-..+.+|+..+++.+.++...-..++.|++....++.+..
T Consensus 348 qlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~ 395 (493)
T KOG0804|consen 348 QLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQ 395 (493)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777788888888889888999999999988888888887777766553
No 184
>PRK14153 heat shock protein GrpE; Provisional
Probab=24.41 E-value=5.2e+02 Score=24.32 Aligned_cols=38 Identities=13% Similarity=0.111 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 88 EVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQ 125 (341)
Q Consensus 88 EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq 125 (341)
+++.+..+...|..++..++.++..+..+..+.+.|..
T Consensus 34 ~~~~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~ 71 (194)
T PRK14153 34 EDSTADSETEKCREEIESLKEQLFRLAAEFDNFRKRTA 71 (194)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555556666666666666666666666666665
No 185
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=24.36 E-value=1.8e+02 Score=25.80 Aligned_cols=41 Identities=22% Similarity=0.187 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 84 ALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRV 124 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRL 124 (341)
..+.-+..|+.+...--.||..||.+...+......|++||
T Consensus 91 ~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekrl 131 (131)
T PF04859_consen 91 TYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKRL 131 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 34556777777777777888888888777777777776664
No 186
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=24.29 E-value=5e+02 Score=22.91 Aligned_cols=43 Identities=14% Similarity=0.248 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 89 VENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQ 131 (341)
Q Consensus 89 Ie~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQ 131 (341)
++....=...+..|+..++.....+...+..+...++++|-+.
T Consensus 77 lDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki 119 (126)
T PF07889_consen 77 LDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKI 119 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444555555555555555555555555444443
No 187
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=24.05 E-value=4.8e+02 Score=25.92 Aligned_cols=44 Identities=16% Similarity=0.227 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 88 EVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQ 131 (341)
Q Consensus 88 EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQ 131 (341)
.++..+.+...+..|+.+..+....+..++..+++||..++.+=
T Consensus 201 ~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~ 244 (269)
T PF05278_consen 201 KLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMES 244 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555555566666666666666666555543
No 188
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=23.98 E-value=3.8e+02 Score=28.69 Aligned_cols=34 Identities=12% Similarity=0.092 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 85 LWKEVENLKAGKNALTQELLKLRQYQETADNKLL 118 (341)
Q Consensus 85 L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~ 118 (341)
|+.+++.||.+.+.+.+....+++..+.+..++.
T Consensus 81 LEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~ 114 (475)
T PRK13729 81 MQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNA 114 (475)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 3334444433333333333333333333333333
No 189
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.76 E-value=5e+02 Score=25.75 Aligned_cols=55 Identities=18% Similarity=0.286 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019406 85 LWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQ 143 (341)
Q Consensus 85 L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMmsFLakv~q 143 (341)
|...|+.+-.....+..|+.+++++...+..++..+++|+. .++.++.-=+|+|+
T Consensus 57 L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~----~r~~~l~~raRAmq 111 (265)
T COG3883 57 LDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIV----ERQELLKKRARAMQ 111 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 33444444444444444444444445555555555555554 22344554455554
No 190
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=23.74 E-value=2.5e+02 Score=27.70 Aligned_cols=31 Identities=23% Similarity=0.311 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 83 SALWKEVENLKAGKNALTQELLKLRQYQETA 113 (341)
Q Consensus 83 ~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~ 113 (341)
..|..+++.||+++..|..|+..++.+....
T Consensus 35 ~~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~ 65 (308)
T PF11382_consen 35 DSLEDQFDSLREENDELRAELDALQAQLNAA 65 (308)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666665555554443
No 191
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=23.60 E-value=3e+02 Score=24.66 Aligned_cols=64 Identities=14% Similarity=0.154 Sum_probs=36.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 77 CEKIDHSALWKEVENLKAGKNALTQELLKLRQYQETAD-NKLLLLRDRVQGMEKSQQQMLSFLVM 140 (341)
Q Consensus 77 ~~e~~~~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~-~el~~leeRLq~~EqrQQQMmsFLak 140 (341)
.+..++..|..|++.|+..+..+.+++..-|.+=-..+ .+..+.++++...+.|...+-.-|+.
T Consensus 8 lT~eg~~~L~~EL~~L~~~r~~i~~~i~~Ar~~GDlsENaey~aak~~q~~~e~RI~~L~~~L~~ 72 (158)
T PRK05892 8 LAPAARDHLEAELARLRARRDRLAVEVNDRGMIGDHGDQAEAIQRADELARLDDRINELDRRLRT 72 (158)
T ss_pred cCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34457788999999999877777777755554311111 12333444444444554455444443
No 192
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=23.37 E-value=7.6e+02 Score=25.10 Aligned_cols=40 Identities=23% Similarity=0.277 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 83 SALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRD 122 (341)
Q Consensus 83 ~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~lee 122 (341)
..+...+..|+..+.+|..|+...|.....+..++.++++
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~ 62 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALRE 62 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555554444444443
No 193
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=23.22 E-value=7.8e+02 Score=25.17 Aligned_cols=119 Identities=17% Similarity=0.182 Sum_probs=63.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHhhcCcccccchhhh
Q 019406 84 ALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQNPSFLVQLLQPKENNWRMAE 163 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMmsFLakv~qnP~fl~qLvqq~e~~~r~~~ 163 (341)
+|-.....|.++.+.|.-.=--++.++.++..++.+..+.+...+.-.--|=.||..+=||.+.+-.-.-.+--.|-+..
T Consensus 29 dly~r~k~le~~le~l~vqe~yik~e~~~lkre~~~aqeevkriqsvplvigqfle~vdqnt~ivgsttgsny~vrilst 108 (408)
T KOG0727|consen 29 DLYVRYKKLERELELLEVQEDYIKDEQRNLKRELLHAQEEVKRIQSVPLVIGQFLEAVDQNTAIVGSTTGSNYYVRILST 108 (408)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhhccCceeecccCCceEEeehhh
Confidence 44445555666655555444555667777777777776666544333334556777777776554322111111111111
Q ss_pred ccc-hhhhhcccCCCCCCCCCeeeeCCCCCCCCCCCCCCCC
Q 019406 164 AGT-MLEEVTEVGEPIASDNMLVRYHPPIDETPKPVLKPVT 203 (341)
Q Consensus 164 ~~~-~~~~~~~~~~~~~~~~~Iv~yqp~~~e~~~~~~~p~~ 203 (341)
..+ .+++...- .-+..++.+|---||..+-+-+|+-|+-
T Consensus 109 idrellkps~sv-alhrhsnalvdvlppeadssi~ml~~~e 148 (408)
T KOG0727|consen 109 IDRELLKPSASV-ALHRHSNALVDVLPPEADSSISMLGPDE 148 (408)
T ss_pred hhHHHcCCccch-hhhhcccceeeccCCcccccccccCCCC
Confidence 111 12222111 1123567889999998888888877753
No 194
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=23.21 E-value=4.1e+02 Score=22.04 Aligned_cols=41 Identities=22% Similarity=0.334 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 85 LWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQ 125 (341)
Q Consensus 85 L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq 125 (341)
..+-+..|+.....+...+.+|..+...+..++..++.+++
T Consensus 65 ~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 65 KEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666677777777777777777777666666666665
No 195
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=23.18 E-value=3.2e+02 Score=23.93 Aligned_cols=22 Identities=18% Similarity=0.057 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019406 104 LKLRQYQETADNKLLLLRDRVQ 125 (341)
Q Consensus 104 ~rLRQqqq~~~~el~~leeRLq 125 (341)
..|-.++-.+.-+...+++||-
T Consensus 32 ~~lvEEN~~L~lENe~LR~RL~ 53 (114)
T COG4467 32 GSLVEENTALRLENEKLRERLG 53 (114)
T ss_pred HHHHHhhHHHHhhHHHHHHHhC
Confidence 3333334444444555556654
No 196
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=23.14 E-value=3.8e+02 Score=24.62 Aligned_cols=19 Identities=16% Similarity=0.305 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019406 115 NKLLLLRDRVQGMEKSQQQ 133 (341)
Q Consensus 115 ~el~~leeRLq~~EqrQQQ 133 (341)
.++..|..+|+.+|++..+
T Consensus 125 ~e~ee~~~~l~~le~~~~~ 143 (175)
T PRK13182 125 REMEEMLERLQKLEARLKK 143 (175)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455666666666655443
No 197
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=23.07 E-value=6.2e+02 Score=23.55 Aligned_cols=43 Identities=14% Similarity=0.173 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019406 100 TQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAM 142 (341)
Q Consensus 100 ~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMmsFLakv~ 142 (341)
..++.+|+++++.+..++..+.++....+.-.+.++..+-++-
T Consensus 110 ~~e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li~Im~rar 152 (170)
T PRK13923 110 SEQIGKLQEEEEKLSWENQTLKQELAITEEDYRALIVIMNRAR 152 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566667777777777777777777666666666666554443
No 198
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=22.86 E-value=6.2e+02 Score=23.51 Aligned_cols=11 Identities=27% Similarity=0.298 Sum_probs=4.3
Q ss_pred cCChHHHhhcC
Q 019406 143 QNPSFLVQLLQ 153 (341)
Q Consensus 143 qnP~fl~qLvq 153 (341)
|.-+|-.-++.
T Consensus 139 Qk~~~kn~lLE 149 (201)
T PF13851_consen 139 QKTGLKNLLLE 149 (201)
T ss_pred HHHHHHHHHHH
Confidence 33344444443
No 199
>PF08651 DASH_Duo1: DASH complex subunit Duo1; InterPro: IPR013960 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=22.79 E-value=4.1e+02 Score=21.41 Aligned_cols=65 Identities=20% Similarity=0.261 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHhhcCccc
Q 019406 84 ALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQNPSFLVQLLQPKE 156 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMmsFLakv~qnP~fl~qLvqq~e 156 (341)
.|..|++.|++=+.++..=+..|+.-. ..++.+.+.+.. =..|+.--.+++...++.++|+...+
T Consensus 2 aL~kEL~~Lr~IN~~ie~~~~~L~~a~----~~~~~v~~~~~~----t~~LLd~w~~IlSQte~~~~Ll~dp~ 66 (78)
T PF08651_consen 2 ALEKELEQLRKINPVIEGLIETLRSAK----SNMNRVQETVES----TNTLLDKWIRILSQTEHTQRLLLDPE 66 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 355666666666655544444333322 223333333322 24578888888888899999986543
No 200
>PHA01819 hypothetical protein
Probab=22.79 E-value=1.1e+02 Score=26.39 Aligned_cols=31 Identities=35% Similarity=0.576 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHhh
Q 019406 118 LLLRDRVQGMEKSQQQMLSFLVMAMQNPSFLVQL 151 (341)
Q Consensus 118 ~~leeRLq~~EqrQQQMmsFLakv~qnP~fl~qL 151 (341)
..+++|+..+| |||-.||..-+|.|.-++|-
T Consensus 73 vvleqri~sle---qq~ttflssq~qqpqqvqqt 103 (129)
T PHA01819 73 VVLEQRIASLE---QQVTTFLSSQMQQPQQVQQT 103 (129)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHhhCchhhhhc
Confidence 34677777666 47999999999999777554
No 201
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=22.65 E-value=5.7e+02 Score=23.23 Aligned_cols=51 Identities=16% Similarity=0.205 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 84 ALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQML 135 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMm 135 (341)
.|...|+.|...+ .+..+|..|+++...+..++..+-..|..+++.-..++
T Consensus 13 ~L~~~L~~l~~hq-~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~ 63 (188)
T PF10018_consen 13 ELSSALEELQEHQ-ENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTLP 63 (188)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677775554 45888999999998888888888888887776655554
No 202
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=22.65 E-value=2.8e+02 Score=28.79 Aligned_cols=33 Identities=15% Similarity=0.213 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 93 KAGKNALTQELLKLRQYQETADNKLLLLRDRVQ 125 (341)
Q Consensus 93 KrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq 125 (341)
+.....|..++.+|..+...+..++..+++|+.
T Consensus 405 ~~~~~~l~~~i~~l~~~i~~~~~rl~~~e~rl~ 437 (462)
T PRK08032 405 KTATDGVNKTLKKLTKQYNAVSDSIDATIARYK 437 (462)
T ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456666677777777777777766666665
No 203
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=22.57 E-value=5.3e+02 Score=23.01 Aligned_cols=71 Identities=23% Similarity=0.310 Sum_probs=39.5
Q ss_pred hhhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CChHHHhhc
Q 019406 82 HSALWKEVENLKAGKNALT-----QELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQ-NPSFLVQLL 152 (341)
Q Consensus 82 ~~~L~~EIe~LKrDq~~L~-----qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMmsFLakv~q-nP~fl~qLv 152 (341)
...+..|+.+||++++.+. +.=.||+++...+..++..+.+.+.....+....+..+..++. -|-++..+.
T Consensus 42 ~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 118 (161)
T PF04420_consen 42 QRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSKVLWVLTTLPFFVLRFW 118 (161)
T ss_dssp HHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhee
Confidence 3456677777777777654 2345677777778888888887777777777776666554443 333444444
No 204
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=22.26 E-value=5.2e+02 Score=22.44 Aligned_cols=55 Identities=13% Similarity=0.171 Sum_probs=35.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 81 DHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQML 135 (341)
Q Consensus 81 ~~~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMm 135 (341)
...+|..+++..|..+..|..+=-.|+..++.+..+.....+|+...+.+..-+.
T Consensus 17 ~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~ 71 (107)
T PF09304_consen 17 RLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEAR 71 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777666666666666666666666666666555444433
No 205
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=22.21 E-value=3.8e+02 Score=26.48 Aligned_cols=31 Identities=23% Similarity=0.331 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 88 EVENLKAGKNALTQELLKLRQYQETADNKLL 118 (341)
Q Consensus 88 EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~ 118 (341)
.+..+..|...|...|.+-+++.+....+++
T Consensus 184 ~l~~l~~de~~Le~KIekkk~ELER~qKRL~ 214 (267)
T PF10234_consen 184 QLNNLASDEANLEAKIEKKKQELERNQKRLQ 214 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444333
No 206
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=21.89 E-value=85 Score=33.46 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019406 88 EVENLKAGKNALTQELLKLRQY 109 (341)
Q Consensus 88 EIe~LKrDq~~L~qEL~rLRQq 109 (341)
+|+.|+++.+.|.+++..|..+
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~ 53 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDR 53 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccc
Confidence 5555555555555555544443
No 207
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=21.68 E-value=1.2e+02 Score=23.49 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019406 112 TADNKLLLLRDRVQGMEKSQQQ 133 (341)
Q Consensus 112 ~~~~el~~leeRLq~~EqrQQQ 133 (341)
+++.++..|++||+..|++=++
T Consensus 29 tiEqRLa~LE~rL~~ae~ra~~ 50 (60)
T PF11471_consen 29 TIEQRLAALEQRLQAAEQRAQA 50 (60)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
No 208
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=21.59 E-value=4.5e+02 Score=21.50 Aligned_cols=42 Identities=24% Similarity=0.340 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 84 ALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQ 125 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq 125 (341)
.+..-++.|++....|..++.++..+...+..++..++..++
T Consensus 84 ~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~ 125 (129)
T cd00890 84 SLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQ 125 (129)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777777777777777777777777766666665
No 209
>PRK07737 fliD flagellar capping protein; Validated
Probab=21.59 E-value=4.2e+02 Score=27.95 Aligned_cols=29 Identities=17% Similarity=0.271 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 97 NALTQELLKLRQYQETADNKLLLLRDRVQ 125 (341)
Q Consensus 97 ~~L~qEL~rLRQqqq~~~~el~~leeRLq 125 (341)
..|..++.++.++...+..+|...++|++
T Consensus 444 ~~l~~~i~~l~~~i~~~~~rl~~~e~ry~ 472 (501)
T PRK07737 444 FAIGKDLNQIETQIDRFQDRLKQIEDRYY 472 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666666666666664
No 210
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=21.55 E-value=1.5e+02 Score=24.02 Aligned_cols=22 Identities=14% Similarity=0.252 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019406 108 QYQETADNKLLLLRDRVQGMEK 129 (341)
Q Consensus 108 Qqqq~~~~el~~leeRLq~~Eq 129 (341)
+..+.+..+...|++|++..|.
T Consensus 42 ~~L~~L~~~a~rm~eRI~tLE~ 63 (75)
T PF06667_consen 42 QRLQELYEQAERMEERIETLER 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556677778888887764
No 211
>PF15456 Uds1: Up-regulated During Septation
Probab=21.34 E-value=3.7e+02 Score=23.47 Aligned_cols=46 Identities=20% Similarity=0.262 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh
Q 019406 100 TQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQNPS 146 (341)
Q Consensus 100 ~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMmsFLakv~qnP~ 146 (341)
..||..|+++...+..++..++.++. .|.+-..-..-|++....+.
T Consensus 21 ~eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~~~~~ 66 (124)
T PF15456_consen 21 FEEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRLYSSSS 66 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCc
Confidence 36888999999999999999999998 78887777777888776554
No 212
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=21.27 E-value=3.1e+02 Score=22.94 Aligned_cols=35 Identities=26% Similarity=0.279 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 86 WKEVENLKAGKNALTQELLKLRQYQETADNKLLLL 120 (341)
Q Consensus 86 ~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~l 120 (341)
+..|..|..++..|..|+..|+.+......+-+.|
T Consensus 48 ek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~L 82 (87)
T PF12709_consen 48 EKKVDELENENKALKRENEQLKKKLDTEREEKQEL 82 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 213
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=21.07 E-value=5.4e+02 Score=25.68 Aligned_cols=24 Identities=33% Similarity=0.332 Sum_probs=11.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 019406 83 SALWKEVENLKAGKNALTQELLKL 106 (341)
Q Consensus 83 ~~L~~EIe~LKrDq~~L~qEL~rL 106 (341)
.+|...++.|+.|...|...+..+
T Consensus 147 ~~L~~~~~~l~~D~~~L~~~~~~l 170 (312)
T smart00787 147 EGLDENLEGLKEDYKLLMKELELL 170 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555444433
No 214
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=21.05 E-value=5.1e+02 Score=26.34 Aligned_cols=55 Identities=22% Similarity=0.278 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 86 WKEVENLKAGKNALTQELLKLRQYQ---ETADNKLLLLRDRVQGMEKSQQQMLSFLVM 140 (341)
Q Consensus 86 ~~EIe~LKrDq~~L~qEL~rLRQqq---q~~~~el~~leeRLq~~EqrQQQMmsFLak 140 (341)
..-++.|+.....+..++.+|.... .....++..+++.+...+++..++-.+++.
T Consensus 241 ~~~~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~~~~~~ 298 (406)
T PF02388_consen 241 KEYLESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAEELIAE 298 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555555555431 145667788888888888888888887765
No 215
>PF12269 zf-CpG_bind_C: CpG binding protein zinc finger C terminal domain; InterPro: IPR022056 This domain family is found in eukaryotes, and is approximately 240 amino acids in length. This domain is the zinc finger domain of a CpG binding DNA methyltransferase protein. It contains a CxxC motif which forms the zinc finger and binds to DNA.
Probab=20.86 E-value=2.4e+02 Score=27.51 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019406 118 LLLRDRVQGMEKSQQQMLSFLVMAMQ 143 (341)
Q Consensus 118 ~~leeRLq~~EqrQQQMmsFLakv~q 143 (341)
..++.+++.++.+++.|..|++++-+
T Consensus 39 ~~v~~~l~eLe~~~~el~~~i~~~k~ 64 (236)
T PF12269_consen 39 QKVRNRLQELEKRFKELEAIIARAKQ 64 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455666777777889999988665
No 216
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=20.58 E-value=6.7e+02 Score=25.74 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 84 ALWKEVENLKAGKNALTQELLKLRQY 109 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~rLRQq 109 (341)
.+..+++.|++....+..++.++++.
T Consensus 331 ~l~~~~~~l~~~~~~~~~~l~~l~~~ 356 (451)
T PF03961_consen 331 ELKEKLEELEEELEELKEELEKLKKN 356 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555544
No 217
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=20.44 E-value=3.9e+02 Score=20.29 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 85 LWKEVENLKAGKNALTQELLKLRQY 109 (341)
Q Consensus 85 L~~EIe~LKrDq~~L~qEL~rLRQq 109 (341)
+..|+.+|.++...+..+|.++...
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~k 26 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKK 26 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777776654
No 218
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=20.42 E-value=3.9e+02 Score=21.72 Aligned_cols=42 Identities=24% Similarity=0.257 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 84 ALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQ 125 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq 125 (341)
.+.+-++.+++....|...+.+++++...+..++..+...++
T Consensus 74 s~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~ 115 (120)
T PF02996_consen 74 SLEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQ 115 (120)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677778888888888888887777777777776666665
No 219
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=20.41 E-value=5e+02 Score=21.47 Aligned_cols=35 Identities=14% Similarity=0.139 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 85 LWKEVENLKAGKNALTQELLKLRQYQETADNKLLL 119 (341)
Q Consensus 85 L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~ 119 (341)
|+.-|.+-=.....|..||..|+.++..+..+++.
T Consensus 9 LE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444445555666666666666665555444
No 220
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=20.40 E-value=1.6e+02 Score=23.74 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019406 111 ETADNKLLLLRDRVQGMEK 129 (341)
Q Consensus 111 q~~~~el~~leeRLq~~Eq 129 (341)
+.+..+.+.|++|++..|.
T Consensus 45 ~~L~~~a~rm~eRI~tLE~ 63 (75)
T TIGR02976 45 QELYAKADRLEERIDTLER 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556667778888887764
No 221
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=20.40 E-value=7.3e+02 Score=27.26 Aligned_cols=46 Identities=20% Similarity=0.209 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 83 SALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGME 128 (341)
Q Consensus 83 ~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~E 128 (341)
..|..|++.|+++...|..++...-..++.+..-+...++||..+|
T Consensus 83 ~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE 128 (617)
T PF15070_consen 83 QQLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELE 128 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777888888877777776655555544333334444444333
No 222
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=20.36 E-value=5.3e+02 Score=28.79 Aligned_cols=52 Identities=19% Similarity=0.243 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 87 KEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFL 138 (341)
Q Consensus 87 ~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMmsFL 138 (341)
.+.++-..+...+..++..|+...+.+..++....+|.+...+|-+.|+.-+
T Consensus 572 ~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l 623 (717)
T PF10168_consen 572 QQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLL 623 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444444444444444444444444433
No 223
>PRK06664 fliD flagellar hook-associated protein FliD; Validated
Probab=20.24 E-value=4.9e+02 Score=28.76 Aligned_cols=55 Identities=13% Similarity=0.134 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHhhc
Q 019406 95 GKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQNPSFLVQLL 152 (341)
Q Consensus 95 Dq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMmsFLakv~qnP~fl~qLv 152 (341)
....|...|.++..++..+..++...++|++. +--+|=..|+++=+.-++|.+++
T Consensus 601 r~~~l~~~i~~l~~~i~~~e~rl~~~e~rl~~---QFtaME~~msqmnsqss~L~~~~ 655 (661)
T PRK06664 601 KVKGLDERIADNNKKIEEYEKKLESKERKLKG---KYLTMDQTVKKMKEQSNYLKNFN 655 (661)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566666666666666666666665542 11223333333333334555444
Done!