Query 019406
Match_columns 341
No_of_seqs 190 out of 599
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 15:35:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019406.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019406hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hks_A Heat-shock transcriptio 99.9 5.6E-23 1.9E-27 169.4 2.2 50 2-55 44-106 (106)
2 2ldu_A Heat shock factor prote 99.8 1E-22 3.6E-27 172.9 1.9 52 3-58 58-123 (125)
3 3hts_B Heat shock transcriptio 99.6 2.6E-16 9E-21 129.9 1.1 34 3-40 53-100 (102)
4 2jee_A YIIU; FTSZ, septum, coi 88.3 3.7 0.00013 32.6 9.3 52 84-135 24-75 (81)
5 1deb_A APC protein, adenomatou 82.4 7.5 0.00026 28.5 7.7 45 82-126 5-49 (54)
6 3e98_A GAF domain of unknown f 74.9 7.4 0.00025 35.8 7.3 78 34-145 39-116 (252)
7 3q8t_A Beclin-1; autophagy, AT 74.5 23 0.00079 28.2 9.3 47 83-129 7-53 (96)
8 1a93_B MAX protein, coiled coi 74.4 4.6 0.00016 27.3 4.2 29 92-120 5-33 (34)
9 2yy0_A C-MYC-binding protein; 74.2 6.4 0.00022 28.6 5.3 29 88-116 20-48 (53)
10 4dzn_A Coiled-coil peptide CC- 73.9 5.4 0.00019 26.2 4.3 27 83-109 5-31 (33)
11 1t2k_D Cyclic-AMP-dependent tr 72.8 5.8 0.0002 28.9 4.9 35 83-117 25-59 (61)
12 3tnu_B Keratin, type II cytosk 72.7 24 0.00083 29.1 9.3 56 84-139 33-88 (129)
13 2wt7_A Proto-oncogene protein 72.2 10 0.00035 27.9 6.2 35 83-117 26-60 (63)
14 1wt6_A Myotonin-protein kinase 69.4 21 0.00073 28.3 7.7 42 84-125 28-69 (81)
15 3hnw_A Uncharacterized protein 67.7 27 0.00092 29.6 8.7 30 98-127 93-122 (138)
16 3tnu_A Keratin, type I cytoske 66.2 25 0.00084 29.1 8.0 55 85-139 36-90 (131)
17 3hnw_A Uncharacterized protein 66.0 33 0.0011 29.1 8.9 45 85-129 66-110 (138)
18 2wt7_B Transcription factor MA 64.8 15 0.00053 29.4 6.2 81 13-126 7-87 (90)
19 3he5_B Synzip2; heterodimeric 64.2 23 0.00078 25.3 6.3 41 84-124 7-47 (52)
20 1ci6_A Transcription factor AT 63.3 16 0.00053 27.1 5.6 34 83-116 26-59 (63)
21 1jnm_A Proto-oncogene C-JUN; B 60.1 8.2 0.00028 28.3 3.5 35 83-117 25-59 (62)
22 2v66_B Nuclear distribution pr 59.2 59 0.002 26.9 9.0 49 84-132 39-87 (111)
23 3m48_A General control protein 57.6 15 0.00052 24.6 4.1 25 84-108 4-28 (33)
24 1jcd_A Major outer membrane li 56.0 52 0.0018 23.9 7.1 43 83-125 7-49 (52)
25 2yy0_A C-MYC-binding protein; 54.4 24 0.00083 25.5 5.2 30 81-110 20-49 (53)
26 1kd8_B GABH BLL, GCN4 acid bas 53.9 21 0.00073 24.3 4.4 28 83-110 4-31 (36)
27 1g6u_A Domain swapped dimer; d 53.1 51 0.0017 23.2 6.4 41 84-125 4-44 (48)
28 1hjb_A Ccaat/enhancer binding 51.9 25 0.00085 27.9 5.3 33 84-116 40-72 (87)
29 2w83_C C-JUN-amino-terminal ki 51.6 27 0.00092 27.5 5.3 44 81-124 31-74 (77)
30 2v66_B Nuclear distribution pr 50.2 1.1E+02 0.0037 25.4 10.1 45 96-140 37-81 (111)
31 3na7_A HP0958; flagellar bioge 49.7 1.1E+02 0.0036 27.7 10.0 49 81-129 91-139 (256)
32 2dgc_A Protein (GCN4); basic d 48.8 17 0.00058 27.0 3.7 28 83-110 33-60 (63)
33 1kd8_A GABH AIV, GCN4 acid bas 48.8 45 0.0015 22.7 5.3 29 83-111 4-32 (36)
34 4etp_A Kinesin-like protein KA 48.2 60 0.0021 31.7 8.5 55 90-144 6-60 (403)
35 2v71_A Nuclear distribution pr 47.3 1.3E+02 0.0046 26.9 10.0 43 85-127 93-135 (189)
36 3oja_A Leucine-rich immune mol 47.2 80 0.0027 30.4 9.2 49 84-132 425-473 (487)
37 3na7_A HP0958; flagellar bioge 47.2 1.1E+02 0.0037 27.7 9.6 51 82-132 34-84 (256)
38 3mq7_A Bone marrow stromal ant 46.9 38 0.0013 28.6 5.9 26 99-124 76-101 (121)
39 1uo4_A General control protein 46.3 32 0.0011 23.2 4.3 26 83-108 4-29 (34)
40 2xu6_A MDV1 coiled coil; prote 45.6 44 0.0015 25.9 5.6 48 81-128 22-69 (72)
41 1nkp_B MAX protein, MYC proto- 45.4 24 0.00082 26.8 4.2 32 88-119 48-79 (83)
42 2w6a_A ARF GTPase-activating p 45.1 62 0.0021 24.4 6.2 38 84-121 24-61 (63)
43 2v71_A Nuclear distribution pr 44.9 1E+02 0.0036 27.6 8.9 41 96-136 90-130 (189)
44 4dzn_A Coiled-coil peptide CC- 44.6 48 0.0016 21.8 4.8 21 88-108 3-23 (33)
45 1nkp_A C-MYC, MYC proto-oncoge 44.5 41 0.0014 26.2 5.5 34 87-120 52-85 (88)
46 3c3g_A Alpha/beta peptide with 44.4 38 0.0013 22.7 4.4 26 83-108 3-28 (33)
47 2wt7_B Transcription factor MA 44.4 26 0.0009 28.1 4.4 32 81-112 56-87 (90)
48 3c3f_A Alpha/beta peptide with 43.7 39 0.0013 22.7 4.4 26 83-108 4-29 (34)
49 1gd2_E Transcription factor PA 42.9 34 0.0012 26.1 4.7 37 83-119 32-68 (70)
50 1wt6_A Myotonin-protein kinase 41.6 1.3E+02 0.0044 23.8 8.7 47 83-133 17-63 (81)
51 4etp_A Kinesin-like protein KA 41.3 93 0.0032 30.3 8.7 52 83-134 6-57 (403)
52 3uux_B Mitochondrial division 40.8 78 0.0027 29.6 7.6 63 91-153 153-215 (242)
53 2oxj_A Hybrid alpha/beta pepti 40.5 43 0.0015 22.6 4.2 26 83-108 4-29 (34)
54 1t6f_A Geminin; coiled-coil, c 40.4 72 0.0025 21.8 5.3 29 85-113 5-33 (37)
55 2bni_A General control protein 39.8 47 0.0016 22.4 4.3 26 83-108 4-29 (34)
56 2wq1_A General control protein 39.4 51 0.0017 22.1 4.4 26 83-108 3-28 (33)
57 3t97_C Nuclear pore glycoprote 39.1 19 0.00066 27.1 2.7 42 83-124 15-56 (64)
58 3a2a_A Voltage-gated hydrogen 38.9 89 0.0031 23.2 6.1 38 87-124 11-48 (58)
59 1wle_A Seryl-tRNA synthetase; 38.7 1.7E+02 0.0057 29.6 10.3 91 40-138 44-146 (501)
60 3oja_B Anopheles plasmodium-re 38.3 1.6E+02 0.0054 28.9 9.9 26 85-110 507-532 (597)
61 3oja_B Anopheles plasmodium-re 37.6 1.9E+02 0.0064 28.3 10.3 42 88-129 517-558 (597)
62 2hy6_A General control protein 37.4 54 0.0018 22.1 4.3 26 83-108 4-29 (34)
63 1lwu_C Fibrinogen gamma chain; 36.8 1.1E+02 0.0036 29.5 8.1 37 84-120 9-45 (323)
64 2dq0_A Seryl-tRNA synthetase; 36.5 1.4E+02 0.0048 29.6 9.2 61 80-140 38-101 (455)
65 2jee_A YIIU; FTSZ, septum, coi 36.2 1.6E+02 0.0054 23.2 9.9 35 85-119 11-45 (81)
66 2xdj_A Uncharacterized protein 35.2 1.6E+02 0.0054 23.0 8.6 40 99-138 25-64 (83)
67 3ra3_B P2F; coiled coil domain 35.1 32 0.0011 21.8 2.8 16 91-106 4-19 (28)
68 1a93_B MAX protein, coiled coi 34.7 37 0.0013 22.9 3.2 23 84-106 11-33 (34)
69 3qne_A Seryl-tRNA synthetase, 34.5 1.5E+02 0.0053 29.9 9.2 59 80-138 40-101 (485)
70 1nlw_A MAD protein, MAX dimeri 34.2 53 0.0018 25.2 4.6 32 87-118 47-78 (80)
71 2xdj_A Uncharacterized protein 33.3 1.7E+02 0.0059 22.8 9.2 31 95-125 28-58 (83)
72 2zqm_A Prefoldin beta subunit 32.6 1.6E+02 0.0055 22.8 7.4 43 84-126 67-109 (117)
73 1dh3_A Transcription factor CR 32.5 47 0.0016 23.9 3.8 25 84-108 26-50 (55)
74 1gu4_A CAAT/enhancer binding p 32.4 40 0.0014 26.2 3.6 30 84-113 40-69 (78)
75 2fcw_A Alpha-2-macroglobulin r 32.1 2.2E+02 0.0074 23.6 8.9 29 86-114 23-51 (109)
76 3cvf_A Homer-3, homer protein 31.7 95 0.0033 24.3 5.6 32 91-122 24-55 (79)
77 2dfs_A Myosin-5A; myosin-V, in 31.3 1.9E+02 0.0066 31.8 10.0 53 88-140 978-1030(1080)
78 2wvr_A Geminin; DNA replicatio 30.5 1.7E+02 0.0057 26.8 7.8 48 86-144 114-161 (209)
79 3efg_A Protein SLYX homolog; x 30.3 1.1E+02 0.0036 23.6 5.7 46 83-128 17-62 (78)
80 3a7p_A Autophagy protein 16; c 30.1 2.7E+02 0.0091 24.3 8.8 23 85-107 66-88 (152)
81 1ic2_A Tropomyosin alpha chain 29.8 1.8E+02 0.0062 22.0 8.5 45 85-129 25-69 (81)
82 3kqg_A Langerin, C-type lectin 29.5 79 0.0027 26.0 5.3 35 84-122 3-37 (182)
83 1hjb_A Ccaat/enhancer binding 28.9 1.4E+02 0.0048 23.5 6.3 29 97-125 39-67 (87)
84 1wlq_A Geminin; coiled-coil; 2 28.1 1.7E+02 0.0058 23.2 6.5 28 86-113 37-64 (83)
85 3a7p_A Autophagy protein 16; c 28.0 3E+02 0.01 23.9 10.1 52 83-134 71-129 (152)
86 3u06_A Protein claret segregat 28.0 2.2E+02 0.0074 27.9 8.8 62 83-151 6-67 (412)
87 3uux_B Mitochondrial division 27.6 2E+02 0.0069 26.8 8.0 56 83-138 159-214 (242)
88 1ses_A Seryl-tRNA synthetase; 26.5 1.7E+02 0.0058 28.6 7.8 60 80-139 35-95 (421)
89 2p4v_A Transcription elongatio 26.3 3E+02 0.01 23.3 8.7 63 78-140 7-71 (158)
90 2aze_A Transcription factor DP 26.1 2.2E+02 0.0076 24.8 7.6 29 87-115 5-33 (155)
91 3q0x_A Centriole protein; cent 26.0 3.4E+02 0.012 24.8 9.3 47 80-126 164-210 (228)
92 1fxk_A Prefoldin; archaeal pro 25.9 1.7E+02 0.0059 22.3 6.3 41 85-125 63-103 (107)
93 1joc_A EEA1, early endosomal a 25.7 2.1E+02 0.007 23.4 7.1 26 100-125 10-35 (125)
94 4gkw_A Spindle assembly abnorm 24.8 3.1E+02 0.011 23.8 8.1 39 88-126 47-85 (167)
95 2r2v_A GCN4 leucine zipper; co 24.7 1.1E+02 0.0037 20.6 4.1 26 83-108 4-29 (34)
96 3swy_A Cyclic nucleotide-gated 24.7 1.9E+02 0.0064 20.5 7.3 43 84-129 2-44 (46)
97 1go4_E MAD1 (mitotic arrest de 24.2 1.4E+02 0.0049 24.2 5.7 30 88-117 13-42 (100)
98 1grj_A GREA protein; transcrip 24.1 3.2E+02 0.011 23.0 8.6 63 78-140 7-71 (158)
99 3s4r_A Vimentin; alpha-helix, 23.4 1.8E+02 0.0063 22.8 6.1 25 84-108 20-44 (93)
100 4ani_A Protein GRPE; chaperone 23.3 1.8E+02 0.006 26.4 6.7 38 88-125 60-97 (213)
101 3tnu_A Keratin, type I cytoske 23.2 3.1E+02 0.01 22.4 9.1 30 82-111 47-76 (131)
102 3i00_A HIP-I, huntingtin-inter 23.1 3.2E+02 0.011 22.6 9.5 28 86-113 14-41 (120)
103 3u1c_A Tropomyosin alpha-1 cha 23.1 2.8E+02 0.0096 21.9 8.0 47 84-130 27-73 (101)
104 3lss_A Seryl-tRNA synthetase; 22.9 3.5E+02 0.012 27.3 9.4 29 80-108 44-72 (484)
105 3ra3_A P1C; coiled coil domain 22.8 57 0.002 20.7 2.3 18 92-109 5-22 (28)
106 3u06_A Protein claret segregat 22.7 3E+02 0.01 26.9 8.7 39 95-133 4-42 (412)
107 3m91_A Proteasome-associated A 22.7 2.2E+02 0.0074 20.4 6.4 38 83-120 12-49 (51)
108 1g6u_A Domain swapped dimer; d 22.1 2.1E+02 0.0071 20.1 6.7 9 99-107 5-13 (48)
109 1ic2_A Tropomyosin alpha chain 21.7 2.6E+02 0.0089 21.0 8.7 15 114-128 40-54 (81)
110 1uii_A Geminin; human, DNA rep 21.5 2.2E+02 0.0075 22.6 6.0 29 86-114 45-73 (83)
111 4emc_A Monopolin complex subun 21.5 3.1E+02 0.011 24.7 7.7 45 89-133 22-66 (190)
112 1l8d_A DNA double-strand break 21.1 2.2E+02 0.0074 22.1 6.1 33 89-121 5-37 (112)
113 2xv5_A Lamin-A/C; structural p 20.5 2.4E+02 0.0082 21.5 6.0 26 85-110 3-28 (74)
114 3v86_A De novo design helix; c 20.1 1.1E+02 0.0039 19.2 3.3 22 85-106 5-26 (27)
No 1
>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A
Probab=99.86 E-value=5.6e-23 Score=169.45 Aligned_cols=50 Identities=34% Similarity=0.413 Sum_probs=47.5
Q ss_pred CCcccccCCc---chHHhhhcCCCCCCccccC----------CCCceeecCCccccchhhHHhhhhc
Q 019406 2 SLKLNYLKYQ---LSLKQLLTFSFSQGFRKID----------TDRWEFANDGFVRDQKHLLNNICRR 55 (341)
Q Consensus 2 slLPkYFKHs---SFvRQLNm~l~~YGFRKVd----------pDrWEFANe~F~RGq~hLLknIkRR 55 (341)
.|||+||||+ |||||||| ||||||. ++.|||+||+|+||+++||++|+||
T Consensus 44 ~vLp~yFkh~n~~SFvRQLN~----YGF~Kv~~~~~~~~~~~~~~~ef~h~~F~Rg~~~LL~~IkRk 106 (106)
T 1hks_A 44 ELLPLNYKHNNMASFIRQLNM----YGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK 106 (106)
T ss_dssp TTSTTTTSCCCHHHHHHHHHH----HCCCCSSCSSSCCSSCTTSTTEECCTTCCSSCTTSTTTCCCC
T ss_pred HHhHHhcCCCcHHHHHHhhhc----CCCeEEecccccCccCCCCceEEECcCccCcCHHHHhhCcCC
Confidence 4899999999 99999999 9999994 5889999999999999999999997
No 2
>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.85 E-value=1e-22 Score=172.85 Aligned_cols=52 Identities=37% Similarity=0.528 Sum_probs=49.2
Q ss_pred CcccccCCc---chHHhhhcCCCCCCccccC-----------CCCceeecCCccccchhhHHhhhhcCCC
Q 019406 3 LKLNYLKYQ---LSLKQLLTFSFSQGFRKID-----------TDRWEFANDGFVRDQKHLLNNICRRKNT 58 (341)
Q Consensus 3 lLPkYFKHs---SFvRQLNm~l~~YGFRKVd-----------pDrWEFANe~F~RGq~hLLknIkRRK~~ 58 (341)
|||+||||+ |||||||| ||||||. ++.|||+||+|+||+++||++|+||+++
T Consensus 58 vLp~yFkh~nfsSFvRQLN~----YGF~Kv~~~~~~~~~~~~~~~~eF~H~~F~Rg~~~LL~~IkRk~~~ 123 (125)
T 2ldu_A 58 VLPKYFKHNNMASFVRQLNM----YGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRKVTS 123 (125)
T ss_dssp HHHHHSSCCCHHHHHHHHHH----TTCEEEECSCCSSSSSCSSCCEEEECTTCBTTBGGGTTTSCCCTTS
T ss_pred HhHHhcCCCcHHHHHHHhcc----cCceEEeeccccccccCCCCccEEECccccCCCHHHHhhCcCCCCC
Confidence 799999999 99999999 9999994 5789999999999999999999999875
No 3
>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A
Probab=99.57 E-value=2.6e-16 Score=129.90 Aligned_cols=34 Identities=32% Similarity=0.625 Sum_probs=32.8
Q ss_pred CcccccCCc---chHHhhhcCCCCCCccccC-----------CCCceeecCC
Q 019406 3 LKLNYLKYQ---LSLKQLLTFSFSQGFRKID-----------TDRWEFANDG 40 (341)
Q Consensus 3 lLPkYFKHs---SFvRQLNm~l~~YGFRKVd-----------pDrWEFANe~ 40 (341)
|||+||||+ |||||||| ||||||. +++|||+||+
T Consensus 53 VLp~yFkh~nfsSFvRQLN~----YGF~Kv~~~~~g~~~~~~~~~wEF~n~~ 100 (102)
T 3hts_B 53 VLPKYFKHSNFASFVRQLNM----YGWHKVQDVKSGSMLSNNDSRWEFENER 100 (102)
T ss_dssp THHHHCSSCCHHHHHHHHHH----TTEEECC---------CCSCCEEEEECC
T ss_pred HHHHhcCCCcHHHHHHHhhc----CCceEeeccccCcccCCCcCCeEecCCC
Confidence 899999999 99999999 9999998 7899999997
No 4
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=88.33 E-value=3.7 Score=32.58 Aligned_cols=52 Identities=27% Similarity=0.389 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 84 ALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQML 135 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMm 135 (341)
-|.-||+.||..+..|.+|...++.....+..++..+.+-+..-+.|.+.++
T Consensus 24 lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LL 75 (81)
T 2jee_A 24 LLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556999999999999999998555555555555555544443333333333
No 5
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=82.43 E-value=7.5 Score=28.53 Aligned_cols=45 Identities=22% Similarity=0.231 Sum_probs=38.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 82 HSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQG 126 (341)
Q Consensus 82 ~~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~ 126 (341)
+..|..+|+.||+++..|.+||..--.+...++++-..|.+-+..
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~ 49 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQ 49 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHH
Confidence 456788999999999999999999888888888888888776654
No 6
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=74.89 E-value=7.4 Score=35.80 Aligned_cols=78 Identities=9% Similarity=0.105 Sum_probs=30.1
Q ss_pred ceeecCCccccchhhHHhhhhcCCCCCcchhhhcccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 34 WEFANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQYQETA 113 (341)
Q Consensus 34 WEFANe~F~RGq~hLLknIkRRK~~~s~~~q~s~qqq~~~~~~~~e~~~~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~ 113 (341)
|==+||.|.-.+++||..++=.-+. + .+.+.++ ..+.+||+++..+
T Consensus 39 yL~~~PdFf~~~~~Ll~~L~lph~~------------~-~aVSL~e---------------------rQ~~~LR~r~~~L 84 (252)
T 3e98_A 39 YLSQHPEFFVEHDELIPELRIPHQP------------G-DAVSLVE---------------------RQVRLLRERNIEM 84 (252)
T ss_dssp -----------------------------------------CHHHH---------------------HHHHHHHHHHHHH
T ss_pred HHHhCCHHHhhCHHHHHhCCCCCCC------------C-CcccHHH---------------------HHHHHHHHHHHHH
Confidence 4457999999999999998532111 0 1111221 3355566666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 019406 114 DNKLLLLRDRVQGMEKSQQQMLSFLVMAMQNP 145 (341)
Q Consensus 114 ~~el~~leeRLq~~EqrQQQMmsFLakv~qnP 145 (341)
+.++..|-+..+.-+...+++..+..+++.-.
T Consensus 85 e~~L~~Li~~A~~Ne~l~~~~~~l~l~LL~a~ 116 (252)
T 3e98_A 85 RHRLSQLMDVARENDRLFDKTRRLVLDLLDAT 116 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 66666667777777777777777666666544
No 7
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=74.45 E-value=23 Score=28.24 Aligned_cols=47 Identities=17% Similarity=0.305 Sum_probs=37.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 83 SALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEK 129 (341)
Q Consensus 83 ~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~Eq 129 (341)
..+..++..|+.+-..|.+||..|..+...+..++.+++.-......
T Consensus 7 ~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~ 53 (96)
T 3q8t_A 7 EQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQ 53 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Confidence 56778888888888888888888888888888888887776665544
No 8
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=74.41 E-value=4.6 Score=27.31 Aligned_cols=29 Identities=10% Similarity=0.257 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 92 LKAGKNALTQELLKLRQYQETADNKLLLL 120 (341)
Q Consensus 92 LKrDq~~L~qEL~rLRQqqq~~~~el~~l 120 (341)
+++.+.+..++|..|+.|+..++.++..|
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 45666666666666666666666555443
No 9
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=74.24 E-value=6.4 Score=28.58 Aligned_cols=29 Identities=14% Similarity=0.188 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 88 EVENLKAGKNALTQELLKLRQYQETADNK 116 (341)
Q Consensus 88 EIe~LKrDq~~L~qEL~rLRQqqq~~~~e 116 (341)
+++.||.++..|.+++..|+++.+.+..+
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667766666666666666666555444
No 10
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=73.87 E-value=5.4 Score=26.25 Aligned_cols=27 Identities=37% Similarity=0.367 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 83 SALWKEVENLKAGKNALTQELLKLRQY 109 (341)
Q Consensus 83 ~~L~~EIe~LKrDq~~L~qEL~rLRQq 109 (341)
..|..||..||++..+|.-||..|+|-
T Consensus 5 aalkqeiaalkkeiaalkfeiaalkqg 31 (33)
T 4dzn_A 5 AALKQEIAALKKEIAALKFEIAALKQG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 456667777777777777777777653
No 11
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=72.77 E-value=5.8 Score=28.93 Aligned_cols=35 Identities=26% Similarity=0.253 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 83 SALWKEVENLKAGKNALTQELLKLRQYQETADNKL 117 (341)
Q Consensus 83 ~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el 117 (341)
..|..+++.|..++..|..+|..|+.+...+...+
T Consensus 25 ~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 25 QSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46778888888888888888888888877665543
No 12
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=72.70 E-value=24 Score=29.05 Aligned_cols=56 Identities=14% Similarity=0.083 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 84 ALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLV 139 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMmsFLa 139 (341)
....||..|++....|..||..++.+...+...+..+++|....-..-+..+.-|-
T Consensus 33 ~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE 88 (129)
T 3tnu_B 33 NTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELE 88 (129)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568999999999999999999999999999999888888754444344444443
No 13
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=72.22 E-value=10 Score=27.90 Aligned_cols=35 Identities=29% Similarity=0.341 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 83 SALWKEVENLKAGKNALTQELLKLRQYQETADNKL 117 (341)
Q Consensus 83 ~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el 117 (341)
..|..+++.|..++..|..+|..|+.+...+..-+
T Consensus 26 ~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 26 DTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888999999999888888887776654433
No 14
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=69.39 E-value=21 Score=28.26 Aligned_cols=42 Identities=14% Similarity=0.336 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 84 ALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQ 125 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq 125 (341)
.|..|+.+.|-++..+..+|...+..++.+..++..+++++.
T Consensus 28 ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~e 69 (81)
T 1wt6_A 28 SLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERME 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555545555555444444444443
No 15
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=67.70 E-value=27 Score=29.61 Aligned_cols=30 Identities=17% Similarity=0.302 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 98 ALTQELLKLRQYQETADNKLLLLRDRVQGM 127 (341)
Q Consensus 98 ~L~qEL~rLRQqqq~~~~el~~leeRLq~~ 127 (341)
.|..|+..++-+...+..++..+.+++..+
T Consensus 93 ~lK~el~~~~~k~e~~~~e~~~l~~~~~~l 122 (138)
T 3hnw_A 93 DLKHELIAAQIKAESSAKEIKELKSEINKY 122 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 16
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=66.23 E-value=25 Score=29.14 Aligned_cols=55 Identities=18% Similarity=0.108 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 85 LWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLV 139 (341)
Q Consensus 85 L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMmsFLa 139 (341)
...||..|++....|..||..++.+...+...+..+++|....-..-+..+.-|-
T Consensus 36 ~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE 90 (131)
T 3tnu_A 36 GKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVE 90 (131)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888888888888888888888888887654333344444443
No 17
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=66.04 E-value=33 Score=29.06 Aligned_cols=45 Identities=9% Similarity=0.068 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 85 LWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEK 129 (341)
Q Consensus 85 L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~Eq 129 (341)
+.+|.-.++.+...|.+++..+..+.+.+.+++.....++....+
T Consensus 66 iadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~ 110 (138)
T 3hnw_A 66 IADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAK 110 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555555555555444433
No 18
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=64.77 E-value=15 Score=29.43 Aligned_cols=81 Identities=19% Similarity=0.264 Sum_probs=49.7
Q ss_pred hHHhhhcCCCCCCccccCCCCceeecCCccccchhhHHhhhhcCCCCCcchhhhcccccccccchhhhhhhhHHHHHHHH
Q 019406 13 SLKQLLTFSFSQGFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKLVEPCEKIDHSALWKEVENL 92 (341)
Q Consensus 13 FvRQLNm~l~~YGFRKVdpDrWEFANe~F~RGq~hLLknIkRRK~~~s~~~q~s~qqq~~~~~~~~e~~~~~L~~EIe~L 92 (341)
.||.||..| +|+ -+.+--.|+.|+|+-...+ .+..|-. .=..++..|
T Consensus 7 sVreLN~~L--~gl---------------s~eev~~lKq~RRtlKNRg------------yAq~CR~----Kr~~q~~~L 53 (90)
T 2wt7_B 7 SVRELNRHL--RGF---------------TKDEVIRLKQKRRTLKNRG------------YAQSCRY----KRVQQKHHL 53 (90)
T ss_dssp CHHHHHTTC--TTC---------------CHHHHHHHHHHHHHHHHHH------------HHHHHHH----HHHHHHHHH
T ss_pred CHHHHHHHH--cCC---------------CHHHHHHHHHHHHhhhhhH------------HHHHHHH----HHHHHHHHH
Confidence 488899844 344 4457788999999632110 1122321 122455666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 93 KAGKNALTQELLKLRQYQETADNKLLLLRDRVQG 126 (341)
Q Consensus 93 KrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~ 126 (341)
..++..|..|+..|++++..+..++..+.++++.
T Consensus 54 E~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~ 87 (90)
T 2wt7_B 54 ENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEK 87 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777777777777777777776653
No 19
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=64.24 E-value=23 Score=25.34 Aligned_cols=41 Identities=20% Similarity=0.266 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 84 ALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRV 124 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRL 124 (341)
-|...|.+||+|+-.|...-+.|.+-.-++..++..++..+
T Consensus 7 ylrkkiarlkkdnlqlerdeqnlekiianlrdeiarlenev 47 (52)
T 3he5_B 7 YLRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 45667888888887666655555555555555555444443
No 20
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=63.28 E-value=16 Score=27.05 Aligned_cols=34 Identities=21% Similarity=0.160 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 83 SALWKEVENLKAGKNALTQELLKLRQYQETADNK 116 (341)
Q Consensus 83 ~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~e 116 (341)
..|..+++.|+.++..|..+|..|+.+.+.+..-
T Consensus 26 ~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~l 59 (63)
T 1ci6_A 26 EALTGECKELEKKNEALKERADSLAKEIQYLKDL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888888888888888888777665443
No 21
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=60.09 E-value=8.2 Score=28.26 Aligned_cols=35 Identities=26% Similarity=0.281 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 83 SALWKEVENLKAGKNALTQELLKLRQYQETADNKL 117 (341)
Q Consensus 83 ~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el 117 (341)
..|+.+++.|..++..|..+|..|+.+...+...+
T Consensus 25 ~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 25 ARLEEKVKTLKAQNSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888888888888776654443
No 22
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=59.22 E-value=59 Score=26.93 Aligned_cols=49 Identities=14% Similarity=0.130 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 84 ALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQ 132 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQ 132 (341)
.|..||..|+..+..|..-|..|.|.+-.+...-.+...-|..+|.+-.
T Consensus 39 ~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n 87 (111)
T 2v66_B 39 VLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLN 87 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHH
Confidence 4555555555555555555555555555555554444444444444433
No 23
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=57.56 E-value=15 Score=24.62 Aligned_cols=25 Identities=28% Similarity=0.358 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 84 ALWKEVENLKAGKNALTQELLKLRQ 108 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~rLRQ 108 (341)
.|+..|+.|-..+..|..|+.||+.
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 5788899999999999999999874
No 24
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=55.99 E-value=52 Score=23.87 Aligned_cols=43 Identities=9% Similarity=0.097 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 83 SALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQ 125 (341)
Q Consensus 83 ~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq 125 (341)
..|..+|..|......|..++..||.+.+....+..+..+||.
T Consensus 7 ~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~RlD 49 (52)
T 1jcd_A 7 DQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRAD 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3567788888888888888888888888888888888888886
No 25
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=54.41 E-value=24 Score=25.48 Aligned_cols=30 Identities=23% Similarity=0.237 Sum_probs=22.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 81 DHSALWKEVENLKAGKNALTQELLKLRQYQ 110 (341)
Q Consensus 81 ~~~~L~~EIe~LKrDq~~L~qEL~rLRQqq 110 (341)
+...|..|++.||.....|..++..|+.+.
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677788888888888888888877654
No 26
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=53.90 E-value=21 Score=24.32 Aligned_cols=28 Identities=25% Similarity=0.310 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 83 SALWKEVENLKAGKNALTQELLKLRQYQ 110 (341)
Q Consensus 83 ~~L~~EIe~LKrDq~~L~qEL~rLRQqq 110 (341)
..|++-|+.|...+..|..|+.|||.-.
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 4578889999999999999999998654
No 27
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=53.06 E-value=51 Score=23.21 Aligned_cols=41 Identities=29% Similarity=0.364 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 84 ALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQ 125 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq 125 (341)
.|.+|+..||++--. -.|+..|..+.|.++..+.++.-+++
T Consensus 4 alkselqalkkegfs-peelaaleselqalekklaalksklq 44 (48)
T 1g6u_A 4 ALKSELQALKKEGFS-PEELAALESELQALEKKLAALKSKLQ 44 (48)
T ss_dssp HHHHHHHHHHHTTCS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666553211 12344444444444444444444443
No 28
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=51.91 E-value=25 Score=27.92 Aligned_cols=33 Identities=21% Similarity=0.176 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 84 ALWKEVENLKAGKNALTQELLKLRQYQETADNK 116 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~e 116 (341)
.+..+++.|..++..|..+|..|+.+...+..-
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~l 72 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLRNL 72 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666666665555544433
No 29
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=51.65 E-value=27 Score=27.45 Aligned_cols=44 Identities=23% Similarity=0.272 Sum_probs=24.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 81 DHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRV 124 (341)
Q Consensus 81 ~~~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRL 124 (341)
....|...|+.|-.++.+|..|+..+++-...+..++..+++-+
T Consensus 31 vk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 31 VKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777777777777777666655555544444433
No 30
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=50.24 E-value=1.1e+02 Score=25.36 Aligned_cols=45 Identities=16% Similarity=0.198 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 96 KNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVM 140 (341)
Q Consensus 96 q~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMmsFLak 140 (341)
.+.|..||..||..+..+..++..+++.-...|..-.-..+.|.-
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD 81 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLED 81 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHH
Confidence 455788888888888888888888888888888877777666654
No 31
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=49.70 E-value=1.1e+02 Score=27.68 Aligned_cols=49 Identities=20% Similarity=0.181 Sum_probs=36.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 81 DHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEK 129 (341)
Q Consensus 81 ~~~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~Eq 129 (341)
.+..|..||+.+++.+..+..++..+-.........+..+..++...+.
T Consensus 91 E~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~ 139 (256)
T 3na7_A 91 ELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEK 139 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667888999999999888888888877776666666655555554443
No 32
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=48.84 E-value=17 Score=26.97 Aligned_cols=28 Identities=25% Similarity=0.334 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 83 SALWKEVENLKAGKNALTQELLKLRQYQ 110 (341)
Q Consensus 83 ~~L~~EIe~LKrDq~~L~qEL~rLRQqq 110 (341)
..|+.+++.|+.++..|..|+..|+++.
T Consensus 33 ~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 33 KQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577788888888888888888887654
No 33
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=48.75 E-value=45 Score=22.74 Aligned_cols=29 Identities=24% Similarity=0.281 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 83 SALWKEVENLKAGKNALTQELLKLRQYQE 111 (341)
Q Consensus 83 ~~L~~EIe~LKrDq~~L~qEL~rLRQqqq 111 (341)
..|+..|+.|-..+..|..|+.|||.-.-
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 45888999999999999999999986543
No 34
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=48.20 E-value=60 Score=31.69 Aligned_cols=55 Identities=16% Similarity=0.136 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019406 90 ENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQN 144 (341)
Q Consensus 90 e~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMmsFLakv~qn 144 (341)
+.|+.+...|.+++..+.++...+..++..+.+++...|..-+++-+-+..+-+|
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgn 60 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGN 60 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3344444444444444444444555555556666665555555555555444333
No 35
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=47.33 E-value=1.3e+02 Score=26.87 Aligned_cols=43 Identities=14% Similarity=0.115 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 85 LWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGM 127 (341)
Q Consensus 85 L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~ 127 (341)
|..||..|+..+..|...|..|.+.|-.+.....+...-+..+
T Consensus 93 Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~ 135 (189)
T 2v71_A 93 LEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDF 135 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHH
Confidence 3344444444444444444444444444443333333333333
No 36
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=47.24 E-value=80 Score=30.42 Aligned_cols=49 Identities=6% Similarity=-0.132 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 84 ALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQ 132 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQ 132 (341)
.++.|.++++++......|+.++++++..+...+..+...+..+.++-+
T Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (487)
T 3oja_A 425 EQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQ 473 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHH
Confidence 3445556666777777777777777776666666666666665554433
No 37
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=47.21 E-value=1.1e+02 Score=27.65 Aligned_cols=51 Identities=14% Similarity=0.137 Sum_probs=35.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 82 HSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQ 132 (341)
Q Consensus 82 ~~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQ 132 (341)
...+..++..++.....+..++..++.+......++..++.|+...+.++.
T Consensus 34 l~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~ 84 (256)
T 3na7_A 34 LDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMS 84 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666677777777777777777777777777777777776665543
No 38
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=46.87 E-value=38 Score=28.63 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 99 LTQELLKLRQYQETADNKLLLLRDRV 124 (341)
Q Consensus 99 L~qEL~rLRQqqq~~~~el~~leeRL 124 (341)
|.-||..|.|+.+....++..++...
T Consensus 76 LqgEI~~Lnq~Lq~a~ae~erlr~~~ 101 (121)
T 3mq7_A 76 LEGEITTLNHKLQDASAEVERLRREN 101 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44444444444444444444444333
No 39
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=46.32 E-value=32 Score=23.18 Aligned_cols=26 Identities=12% Similarity=0.222 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 83 SALWKEVENLKAGKNALTQELLKLRQ 108 (341)
Q Consensus 83 ~~L~~EIe~LKrDq~~L~qEL~rLRQ 108 (341)
..|++.+|.|-..+..|..|+.||+.
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45788899999999999999999874
No 40
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=45.63 E-value=44 Score=25.94 Aligned_cols=48 Identities=27% Similarity=0.349 Sum_probs=37.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 81 DHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGME 128 (341)
Q Consensus 81 ~~~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~E 128 (341)
....++..|++|+.-+..+...|+.+.|+.-.+++.+..++.|+..++
T Consensus 22 EI~EID~Ki~nL~~mR~ivldRlA~lEqdE~~LE~~l~~i~~rle~~q 69 (72)
T 2xu6_A 22 EIRDIEVEVENLRQKKEKLLGKIANIEQNQLMLEDNLKQIDDRLDFLE 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 456788899999999999999999999999999999999998887554
No 41
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=45.44 E-value=24 Score=26.83 Aligned_cols=32 Identities=6% Similarity=0.188 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 88 EVENLKAGKNALTQELLKLRQYQETADNKLLL 119 (341)
Q Consensus 88 EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~ 119 (341)
-|..|+.....|..|+..|++++..+..++.+
T Consensus 48 YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 48 YIQYMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777777777766666544
No 42
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=45.13 E-value=62 Score=24.40 Aligned_cols=38 Identities=26% Similarity=0.257 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 84 ALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLR 121 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~le 121 (341)
+-++.|.+|-+-++.|..||..|+...+.+..+...++
T Consensus 24 aSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 24 TSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 44567888888888888888888888877777766554
No 43
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=44.88 E-value=1e+02 Score=27.57 Aligned_cols=41 Identities=15% Similarity=0.244 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 96 KNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLS 136 (341)
Q Consensus 96 q~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMms 136 (341)
.+.|..||..|+..+..+..++..+++.-..+|..-....+
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~ 130 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIM 130 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 33344444444444444444454444444444444444333
No 44
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=44.57 E-value=48 Score=21.75 Aligned_cols=21 Identities=33% Similarity=0.431 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019406 88 EVENLKAGKNALTQELLKLRQ 108 (341)
Q Consensus 88 EIe~LKrDq~~L~qEL~rLRQ 108 (341)
||..||.+..+|..||..|+=
T Consensus 3 eiaalkqeiaalkkeiaalkf 23 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKF 23 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666665543
No 45
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=44.50 E-value=41 Score=26.23 Aligned_cols=34 Identities=26% Similarity=0.233 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 87 KEVENLKAGKNALTQELLKLRQYQETADNKLLLL 120 (341)
Q Consensus 87 ~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~l 120 (341)
+-|..|......+..++..|+++++.+..+++.|
T Consensus 52 ~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 52 AYILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678888888888888888888888887777655
No 46
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=44.36 E-value=38 Score=22.67 Aligned_cols=26 Identities=4% Similarity=0.164 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 83 SALWKEVENLKAGKNALTQELLKLRQ 108 (341)
Q Consensus 83 ~~L~~EIe~LKrDq~~L~qEL~rLRQ 108 (341)
..|+.-|+.|-..+..|..|+.|||.
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 35778899999999999999998874
No 47
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=44.36 E-value=26 Score=28.09 Aligned_cols=32 Identities=25% Similarity=0.299 Sum_probs=18.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 81 DHSALWKEVENLKAGKNALTQELLKLRQYQET 112 (341)
Q Consensus 81 ~~~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~ 112 (341)
+...|..+++.|++++..+..|+..+++.++.
T Consensus 56 e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~ 87 (90)
T 2wt7_B 56 EKTQLIQQVEQLKQEVSRLARERDAYKVKSEK 87 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666666655543
No 48
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=43.68 E-value=39 Score=22.74 Aligned_cols=26 Identities=8% Similarity=0.132 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 83 SALWKEVENLKAGKNALTQELLKLRQ 108 (341)
Q Consensus 83 ~~L~~EIe~LKrDq~~L~qEL~rLRQ 108 (341)
..|+.-|+.|-..+..|..|+.|||.
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 45788899999999999999998875
No 49
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=42.91 E-value=34 Score=26.07 Aligned_cols=37 Identities=30% Similarity=0.232 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 83 SALWKEVENLKAGKNALTQELLKLRQYQETADNKLLL 119 (341)
Q Consensus 83 ~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~ 119 (341)
..|+..|..|......|..|...|+.+...+..++..
T Consensus 32 ~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 32 KALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566667777666666666666666666666555543
No 50
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=41.58 E-value=1.3e+02 Score=23.79 Aligned_cols=47 Identities=23% Similarity=0.291 Sum_probs=37.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 83 SALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQ 133 (341)
Q Consensus 83 ~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQ 133 (341)
+.|+.|| +-+..+..||.++|..+..+..+++..+.|.+..+..-++
T Consensus 17 SALeaEI----qAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~ 63 (81)
T 1wt6_A 17 EALEEEV----LTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQ 63 (81)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556665 4688999999999999999999999888888766554433
No 51
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=41.28 E-value=93 Score=30.35 Aligned_cols=52 Identities=15% Similarity=0.165 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 83 SALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQM 134 (341)
Q Consensus 83 ~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQM 134 (341)
..+..+++.|+++...|..++..++.+.+.+..++...+..-+.+....+.|
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~el 57 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQEL 57 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4566777777777777777777777777777777666555555554444443
No 52
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=40.76 E-value=78 Score=29.58 Aligned_cols=63 Identities=17% Similarity=0.193 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHhhcC
Q 019406 91 NLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQNPSFLVQLLQ 153 (341)
Q Consensus 91 ~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMmsFLakv~qnP~fl~qLvq 153 (341)
.||+.+..+..+|.-|-=+...+..++..+.-+++.+..+++.++.=||.+=++-.||..-+.
T Consensus 153 ~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~ 215 (242)
T 3uux_B 153 ALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLK 215 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 344555555554444444444455555555555555556666666666666666666555443
No 53
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=40.55 E-value=43 Score=22.55 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 83 SALWKEVENLKAGKNALTQELLKLRQ 108 (341)
Q Consensus 83 ~~L~~EIe~LKrDq~~L~qEL~rLRQ 108 (341)
..|+..|+.|-..+..|..|+.+||.
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 45788899999999999999998874
No 54
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=40.40 E-value=72 Score=21.80 Aligned_cols=29 Identities=21% Similarity=0.251 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 85 LWKEVENLKAGKNALTQELLKLRQYQETA 113 (341)
Q Consensus 85 L~~EIe~LKrDq~~L~qEL~rLRQqqq~~ 113 (341)
...|.++|.++...-..||.+|++++..+
T Consensus 5 ~L~ENekLhk~ie~KdeeIa~Lk~eN~eL 33 (37)
T 1t6f_A 5 ALKENEKLHKEIEQKDNEIARLKKENKEL 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 44688899999999999999999988754
No 55
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=39.84 E-value=47 Score=22.39 Aligned_cols=26 Identities=12% Similarity=0.329 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 83 SALWKEVENLKAGKNALTQELLKLRQ 108 (341)
Q Consensus 83 ~~L~~EIe~LKrDq~~L~qEL~rLRQ 108 (341)
..|++-|+.|-..+..|..|+.|||.
T Consensus 4 nQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 4 KQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 35788899999999999999999874
No 56
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=39.41 E-value=51 Score=22.08 Aligned_cols=26 Identities=15% Similarity=0.106 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 83 SALWKEVENLKAGKNALTQELLKLRQ 108 (341)
Q Consensus 83 ~~L~~EIe~LKrDq~~L~qEL~rLRQ 108 (341)
..|++-|+.|-..+..|..|+.||+.
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 35778899999999999999998864
No 57
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=39.14 E-value=19 Score=27.11 Aligned_cols=42 Identities=31% Similarity=0.374 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 83 SALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRV 124 (341)
Q Consensus 83 ~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRL 124 (341)
..|-.++.+.++++..|.++|.-+..||..+..-+..+++.+
T Consensus 15 ~~L~~~v~~~e~~Q~~ldq~Ld~Ie~QQ~ELe~~L~~~E~~v 56 (64)
T 3t97_C 15 TSLHREVEKVKLDQKRLDQELDFILSQQKELEDLLSPLEESV 56 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888888888888877766655555444
No 58
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=38.92 E-value=89 Score=23.22 Aligned_cols=38 Identities=13% Similarity=0.151 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 87 KEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRV 124 (341)
Q Consensus 87 ~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRL 124 (341)
..+.+||.-+..|...|..|+.++...++++..+..=|
T Consensus 11 ~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LL 48 (58)
T 3a2a_A 11 RQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLL 48 (58)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778888888888888888888877777766555444
No 59
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=38.73 E-value=1.7e+02 Score=29.62 Aligned_cols=91 Identities=13% Similarity=0.054 Sum_probs=59.7
Q ss_pred CccccchhhH-HhhhhcCCCCCcchhhhcccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---------
Q 019406 40 GFVRDQKHLL-NNICRRKNTQGSEQRKSLQQSEKLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQY--------- 109 (341)
Q Consensus 40 ~F~RGq~hLL-knIkRRK~~~s~~~q~s~qqq~~~~~~~~e~~~~~L~~EIe~LKrDq~~L~qEL~rLRQq--------- 109 (341)
.|+|..++.+ ++++||+-...... . + .-...+.....+..+++.|+.+++.+..+|..++..
T Consensus 44 ~~ir~n~~~v~~~l~~R~~~~~~~~---~---~--~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~ 115 (501)
T 1wle_A 44 ESLCAYPEDAARALDLRKGELRSKD---L---P--GIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQD 115 (501)
T ss_dssp HHHHHSHHHHHHHHHHHTCSCCGGG---H---H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGC
T ss_pred HHHHhCHHHHHHHHHHcCCCcchhH---H---H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccc
Confidence 4566778876 77877764211000 0 0 001122355678889999999999999999987643
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 110 --QETADNKLLLLRDRVQGMEKSQQQMLSFL 138 (341)
Q Consensus 110 --qq~~~~el~~leeRLq~~EqrQQQMmsFL 138 (341)
-+.+..++..+.+++..++.....+-.=|
T Consensus 116 ~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l 146 (501)
T 1wle_A 116 PQYQSLRARGREIRKQLTLLYPKEAQLEEQF 146 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24567778888888888877777665544
No 60
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=38.27 E-value=1.6e+02 Score=28.86 Aligned_cols=26 Identities=23% Similarity=0.079 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 85 LWKEVENLKAGKNALTQELLKLRQYQ 110 (341)
Q Consensus 85 L~~EIe~LKrDq~~L~qEL~rLRQqq 110 (341)
+..++..++.+.+.+..++.+++++.
T Consensus 507 l~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (597)
T 3oja_B 507 LNKVFTHLKERQAFKLRETQARRTEA 532 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhh
Confidence 44455555555555555555555444
No 61
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=37.58 E-value=1.9e+02 Score=28.33 Aligned_cols=42 Identities=10% Similarity=0.010 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 88 EVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEK 129 (341)
Q Consensus 88 EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~Eq 129 (341)
..+.+.++...+.+++...+++.+.+..++..++++++.+.+
T Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~ 558 (597)
T 3oja_B 517 RQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRA 558 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhh
Confidence 333333444444444444444444444444444444443333
No 62
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=37.44 E-value=54 Score=22.09 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 83 SALWKEVENLKAGKNALTQELLKLRQ 108 (341)
Q Consensus 83 ~~L~~EIe~LKrDq~~L~qEL~rLRQ 108 (341)
..|++-|+.|-..+..|..|+.||+.
T Consensus 4 nQLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 4 KQLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 35778899999999999999998874
No 63
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=36.80 E-value=1.1e+02 Score=29.51 Aligned_cols=37 Identities=14% Similarity=0.102 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 84 ALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLL 120 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~l 120 (341)
.|.+|+.+|.........+|..|+........+++.+
T Consensus 9 ~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l 45 (323)
T 1lwu_C 9 KILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRL 45 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555444444444544444444433333333
No 64
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=36.49 E-value=1.4e+02 Score=29.59 Aligned_cols=61 Identities=16% Similarity=0.197 Sum_probs=45.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 80 IDHSALWKEVENLKAGKNALTQELLKLRQY---QETADNKLLLLRDRVQGMEKSQQQMLSFLVM 140 (341)
Q Consensus 80 ~~~~~L~~EIe~LKrDq~~L~qEL~rLRQq---qq~~~~el~~leeRLq~~EqrQQQMmsFLak 140 (341)
.....+..+++.|+.+++.+..+|.+++.. -+.+..++..+.+++..++.....+-.=|..
T Consensus 38 ~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (455)
T 2dq0_A 38 TEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDY 101 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355678889999999999999999986543 3456677777788887777777666554433
No 65
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=36.19 E-value=1.6e+02 Score=23.20 Aligned_cols=35 Identities=14% Similarity=0.139 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 85 LWKEVENLKAGKNALTQELLKLRQYQETADNKLLL 119 (341)
Q Consensus 85 L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~ 119 (341)
|+.-|..+=.....|..||..|+.++..+..+.+.
T Consensus 11 LE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 11 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444445555555555555555554444
No 66
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=35.16 E-value=1.6e+02 Score=22.96 Aligned_cols=40 Identities=15% Similarity=0.158 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 99 LTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFL 138 (341)
Q Consensus 99 L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMmsFL 138 (341)
|...|..|+++...+..++..+...+..+.++|..+..=|
T Consensus 25 Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dL 64 (83)
T 2xdj_A 25 LQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQI 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444455555555544433
No 67
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=35.08 E-value=32 Score=21.85 Aligned_cols=16 Identities=38% Similarity=0.453 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 019406 91 NLKAGKNALTQELLKL 106 (341)
Q Consensus 91 ~LKrDq~~L~qEL~rL 106 (341)
+||..+..|.+||..|
T Consensus 4 rlkqknarlkqeiaal 19 (28)
T 3ra3_B 4 RLKQKNARLKQEIAAL 19 (28)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHH
Confidence 4444444444444433
No 68
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=34.66 E-value=37 Score=22.89 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 019406 84 ALWKEVENLKAGKNALTQELLKL 106 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~rL 106 (341)
....+|+.||+.+..|..+|..|
T Consensus 11 a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 11 THQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHhhHHHHHHHHHHHHHHHHhc
Confidence 34568999999999999988654
No 69
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=34.51 E-value=1.5e+02 Score=29.90 Aligned_cols=59 Identities=10% Similarity=0.026 Sum_probs=44.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 80 IDHSALWKEVENLKAGKNALTQELLKLRQY---QETADNKLLLLRDRVQGMEKSQQQMLSFL 138 (341)
Q Consensus 80 ~~~~~L~~EIe~LKrDq~~L~qEL~rLRQq---qq~~~~el~~leeRLq~~EqrQQQMmsFL 138 (341)
.....+..+++.|+.+++.+..+|..++.. -+.+..++..+.+++..+|.....+-.=|
T Consensus 40 ~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~ 101 (485)
T 3qne_A 40 KEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNL 101 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678889999999999999999887653 34566777788888887777766665544
No 70
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=34.18 E-value=53 Score=25.24 Aligned_cols=32 Identities=13% Similarity=0.215 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 87 KEVENLKAGKNALTQELLKLRQYQETADNKLL 118 (341)
Q Consensus 87 ~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~ 118 (341)
+-|..|+.....+..|+..|+.+++.+..++.
T Consensus 47 ~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 47 LHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35777777777788888777777776665553
No 71
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=33.32 E-value=1.7e+02 Score=22.78 Aligned_cols=31 Identities=13% Similarity=0.102 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 95 GKNALTQELLKLRQYQETADNKLLLLRDRVQ 125 (341)
Q Consensus 95 Dq~~L~qEL~rLRQqqq~~~~el~~leeRLq 125 (341)
....|..||.+||-+.+....++..|.+|-+
T Consensus 28 Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQr 58 (83)
T 2xdj_A 28 QLSDNQSDIDSLRGQIQENQYQLNQVVERQK 58 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444433
No 72
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=32.63 E-value=1.6e+02 Score=22.82 Aligned_cols=43 Identities=26% Similarity=0.252 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 84 ALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQG 126 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~ 126 (341)
.+..-++.|......+..+|.+|..+...+..++..++..|+.
T Consensus 67 ~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 67 TKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777888888888888888888887777777777763
No 73
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=32.49 E-value=47 Score=23.88 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 84 ALWKEVENLKAGKNALTQELLKLRQ 108 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~rLRQ 108 (341)
.|+.+|..|..++..|..++..|++
T Consensus 26 ~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 26 SLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666666554
No 74
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=32.45 E-value=40 Score=26.18 Aligned_cols=30 Identities=20% Similarity=0.178 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 84 ALWKEVENLKAGKNALTQELLKLRQYQETA 113 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~ 113 (341)
.+...++.|..++..|..+|..|+.+...+
T Consensus 40 e~~~r~~~L~~eN~~L~~~v~~L~~E~~~L 69 (78)
T 1gu4_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTL 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666665555554433
No 75
>2fcw_A Alpha-2-macroglobulin receptor-associated protein; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: a.13.1.1 PDB: 2ftu_A
Probab=32.14 E-value=2.2e+02 Score=23.61 Aligned_cols=29 Identities=21% Similarity=0.317 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 86 WKEVENLKAGKNALTQELLKLRQYQETAD 114 (341)
Q Consensus 86 ~~EIe~LKrDq~~L~qEL~rLRQqqq~~~ 114 (341)
.+|++.||.+.......|.++|..+..+.
T Consensus 23 ~~ELeSlK~EL~HfE~rl~K~rH~~~el~ 51 (109)
T 2fcw_A 23 DKELEAFREELKHFEAKIEKHNHYQKQLE 51 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35888888888888888888887665554
No 76
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=31.66 E-value=95 Score=24.28 Aligned_cols=32 Identities=19% Similarity=0.153 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 91 NLKAGKNALTQELLKLRQYQETADNKLLLLRD 122 (341)
Q Consensus 91 ~LKrDq~~L~qEL~rLRQqqq~~~~el~~lee 122 (341)
.|+.....|...|..=+.++.....++..+-+
T Consensus 24 ~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e 55 (79)
T 3cvf_A 24 ELEHQLRAMERSLEEARAERERARAEVGRAAQ 55 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333334444444443333
No 77
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=31.28 E-value=1.9e+02 Score=31.84 Aligned_cols=53 Identities=19% Similarity=0.218 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 88 EVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVM 140 (341)
Q Consensus 88 EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMmsFLak 140 (341)
|+..++.....|..|+..++++.+.+..+...++++++.+...-+..++-|.+
T Consensus 978 e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~ 1030 (1080)
T 2dfs_A 978 EAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKE 1030 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444445556666666666666666666666666555444444444444
No 78
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=30.47 E-value=1.7e+02 Score=26.80 Aligned_cols=48 Identities=19% Similarity=0.202 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019406 86 WKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQN 144 (341)
Q Consensus 86 ~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMmsFLakv~qn 144 (341)
..|.+.|......|..||..|+++++.+ ..+-+++ |.|.+.|.+++..
T Consensus 114 LeEN~~Lh~~ie~l~eEi~~LkeEn~eL----keLae~~-------q~la~vi~~l~~~ 161 (209)
T 2wvr_A 114 LKENEKLHKEIEQKDNEIARLKKENKEL----AEVAEHV-------QYMAELIERLNGE 161 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH-------HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH-------HHHHHHHHHHhcC
Confidence 4578888888888888888888887654 3333444 3466666665553
No 79
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=30.29 E-value=1.1e+02 Score=23.62 Aligned_cols=46 Identities=11% Similarity=0.064 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 83 SALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGME 128 (341)
Q Consensus 83 ~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~E 128 (341)
..|+..+.-.-.....|...|.+..++...+..++..|.+|++.++
T Consensus 17 ~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 17 VELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455555555666666777777777777777777777777776554
No 80
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=30.14 E-value=2.7e+02 Score=24.28 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019406 85 LWKEVENLKAGKNALTQELLKLR 107 (341)
Q Consensus 85 L~~EIe~LKrDq~~L~qEL~rLR 107 (341)
....|..|+.+...|..+|..+.
T Consensus 66 ~~~~I~~L~~El~~l~~ki~dLe 88 (152)
T 3a7p_A 66 LLNTLAILQKELKSKEQEIRRLK 88 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456666666666665555555
No 81
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=29.84 E-value=1.8e+02 Score=21.97 Aligned_cols=45 Identities=11% Similarity=0.190 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 85 LWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEK 129 (341)
Q Consensus 85 L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~Eq 129 (341)
+...+.........+..||..|.+..+.+..++...++|+.....
T Consensus 25 ~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~ 69 (81)
T 1ic2_A 25 AEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQE 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555566666777777777777776666666665443
No 82
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=29.51 E-value=79 Score=25.99 Aligned_cols=35 Identities=14% Similarity=0.114 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 84 ALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRD 122 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~lee 122 (341)
.|..+|+.||+|...+ ..|+...+.+..++..+..
T Consensus 3 ~l~~~~~~l~~~~~~~----~~l~~~~~~l~~~l~~~~~ 37 (182)
T 3kqg_A 3 TLNAQIPELKSDLEKA----SALNTKIRALQGSLENMSK 37 (182)
T ss_dssp ----------CHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 4566788888877543 3444444444444444433
No 83
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=28.86 E-value=1.4e+02 Score=23.53 Aligned_cols=29 Identities=17% Similarity=0.198 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 97 NALTQELLKLRQYQETADNKLLLLRDRVQ 125 (341)
Q Consensus 97 ~~L~qEL~rLRQqqq~~~~el~~leeRLq 125 (341)
..+..++..|++++..+..++..|+..+.
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~ 67 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQKKVEQLSRELS 67 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777666666655554
No 84
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=28.08 E-value=1.7e+02 Score=23.20 Aligned_cols=28 Identities=25% Similarity=0.293 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 86 WKEVENLKAGKNALTQELLKLRQYQETA 113 (341)
Q Consensus 86 ~~EIe~LKrDq~~L~qEL~rLRQqqq~~ 113 (341)
..|.+.|......+..||.+|+++++.+
T Consensus 37 L~EN~~Lh~~ie~~~eEi~~Lk~en~~L 64 (83)
T 1wlq_A 37 LKENEKLHKEIEQKDSEIARLRKENKDL 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588899999999999999999888654
No 85
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=28.00 E-value=3e+02 Score=23.95 Aligned_cols=52 Identities=15% Similarity=0.193 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 83 SALWKEVENLKAGKNALTQE-------LLKLRQYQETADNKLLLLRDRVQGMEKSQQQM 134 (341)
Q Consensus 83 ~~L~~EIe~LKrDq~~L~qE-------L~rLRQqqq~~~~el~~leeRLq~~EqrQQQM 134 (341)
..|..|+..|+.....|..| +..++.+...+..++..++++++.++.--+++
T Consensus 71 ~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L 129 (152)
T 3a7p_A 71 AILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQL 129 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666655 44455555555555556666666555543333
No 86
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=27.98 E-value=2.2e+02 Score=27.94 Aligned_cols=62 Identities=13% Similarity=0.136 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHhh
Q 019406 83 SALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQNPSFLVQL 151 (341)
Q Consensus 83 ~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMmsFLakv~qnP~fl~qL 151 (341)
..|..|+..|+.....|..++.++ ..++..+++++...+..-+++-+-+..+-.+=....++
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~-------~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gnIrV~vRv 67 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQ-------AAELETCKEQLFQSNMERKELHNTVMDLRDNIRVFCRI 67 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEc
Confidence 355566666655555555544444 44444455555554444455555555544443333333
No 87
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=27.56 E-value=2e+02 Score=26.82 Aligned_cols=56 Identities=21% Similarity=0.200 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 83 SALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFL 138 (341)
Q Consensus 83 ~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMmsFL 138 (341)
..+..+++.|--.+.....||..+-...+.+..-=..+-+||.+.|+..-.+-.-|
T Consensus 159 ~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL 214 (242)
T 3uux_B 159 QTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNL 214 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34555666666666666666666666666666655666666666666554444444
No 88
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=26.47 E-value=1.7e+02 Score=28.59 Aligned_cols=60 Identities=13% Similarity=0.154 Sum_probs=41.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 80 IDHSALWKEVENLKAGKNALTQELLK-LRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLV 139 (341)
Q Consensus 80 ~~~~~L~~EIe~LKrDq~~L~qEL~r-LRQqqq~~~~el~~leeRLq~~EqrQQQMmsFLa 139 (341)
.....+..+++.|+.+++.+..+|.+ -..+-+.+..++..+.+++..++.....+-.=|.
T Consensus 35 ~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (421)
T 1ses_A 35 REVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLE 95 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567888999999999999998874 1123445666777777777777776666554443
No 89
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=26.28 E-value=3e+02 Score=23.30 Aligned_cols=63 Identities=8% Similarity=0.132 Sum_probs=37.2
Q ss_pred hhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 78 EKIDHSALWKEVENLKA-GKNALTQELLKLRQYQETAD-NKLLLLRDRVQGMEKSQQQMLSFLVM 140 (341)
Q Consensus 78 ~e~~~~~L~~EIe~LKr-Dq~~L~qEL~rLRQqqq~~~-~el~~leeRLq~~EqrQQQMmsFLak 140 (341)
+..+...|..|++.|++ .+-.+.++|..-|.+=-..+ .+..+.++|....|.|...+-.-|..
T Consensus 7 T~~g~~~L~~EL~~L~~~~R~~i~~~i~~Ar~~GDlsENaeY~aak~~q~~~e~rI~~L~~~L~~ 71 (158)
T 2p4v_A 7 TREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCMEN 71 (158)
T ss_dssp CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44567788999999966 66667777766653211000 23334456666666665555555544
No 90
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=26.06 E-value=2.2e+02 Score=24.84 Aligned_cols=29 Identities=10% Similarity=0.101 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 87 KEVENLKAGKNALTQELLKLRQYQETADN 115 (341)
Q Consensus 87 ~EIe~LKrDq~~L~qEL~rLRQqqq~~~~ 115 (341)
.|++.|+.++..+...|.+-+++.|.+..
T Consensus 5 qe~~~Le~Ek~~~~~rI~~K~~~LqeL~~ 33 (155)
T 2aze_A 5 QECQNLEVERQRRLERIKQKQSQLQELIL 33 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888877777766665555554433
No 91
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=26.01 E-value=3.4e+02 Score=24.83 Aligned_cols=47 Identities=15% Similarity=0.197 Sum_probs=36.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 80 IDHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQG 126 (341)
Q Consensus 80 ~~~~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~ 126 (341)
.-+..|...+..+|.+...|.+.|.+.+.+......++...++.+..
T Consensus 164 ~Ik~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~ 210 (228)
T 3q0x_A 164 VVKQFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQ 210 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777889999999999999999998888888887777665543
No 92
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=25.87 E-value=1.7e+02 Score=22.34 Aligned_cols=41 Identities=17% Similarity=0.114 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 85 LWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQ 125 (341)
Q Consensus 85 L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq 125 (341)
...-+..|......+..+|.+|..+...+..++..++..++
T Consensus 63 ~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~ 103 (107)
T 1fxk_A 63 KDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777888888888888888777777777777665
No 93
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=25.65 E-value=2.1e+02 Score=23.40 Aligned_cols=26 Identities=23% Similarity=0.227 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 100 TQELLKLRQYQETADNKLLLLRDRVQ 125 (341)
Q Consensus 100 ~qEL~rLRQqqq~~~~el~~leeRLq 125 (341)
.+..++..++...+..+++.++.++.
T Consensus 10 ~~~~~~~e~e~~~l~~~~~el~~~l~ 35 (125)
T 1joc_A 10 LERCLKGEGEIEKLQTKVLELQRKLD 35 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 94
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=24.78 E-value=3.1e+02 Score=23.77 Aligned_cols=39 Identities=26% Similarity=0.231 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 88 EVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQG 126 (341)
Q Consensus 88 EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~ 126 (341)
-|++|++-+.+-..||.+||-+...+...+.-...-|..
T Consensus 47 KVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkr 85 (167)
T 4gkw_A 47 KVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKR 85 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 578888888888889999988887777666655555543
No 95
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=24.73 E-value=1.1e+02 Score=20.63 Aligned_cols=26 Identities=12% Similarity=0.173 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 83 SALWKEVENLKAGKNALTQELLKLRQ 108 (341)
Q Consensus 83 ~~L~~EIe~LKrDq~~L~qEL~rLRQ 108 (341)
..|++-|+.|-..+..|..|+.||+.
T Consensus 4 nQledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 4 KQVADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 35677888888889999999988864
No 96
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=24.72 E-value=1.9e+02 Score=20.47 Aligned_cols=43 Identities=23% Similarity=0.350 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 84 ALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEK 129 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~Eq 129 (341)
.+++-|++|-.....|...++||=-++..+... |.+|+..+|.
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ssq~K---lKqRit~lE~ 44 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNATQMK---MKQRLSQLES 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHh
Confidence 456677888888888888888887777776554 5667766665
No 97
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=24.21 E-value=1.4e+02 Score=24.20 Aligned_cols=30 Identities=20% Similarity=0.299 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 88 EVENLKAGKNALTQELLKLRQYQETADNKL 117 (341)
Q Consensus 88 EIe~LKrDq~~L~qEL~rLRQqqq~~~~el 117 (341)
++..||+....|..|-.+|+++...+..++
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444455554444444433
No 98
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=24.05 E-value=3.2e+02 Score=22.97 Aligned_cols=63 Identities=13% Similarity=0.112 Sum_probs=35.4
Q ss_pred hhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 78 EKIDHSALWKEVENLKA-GKNALTQELLKLRQYQETAD-NKLLLLRDRVQGMEKSQQQMLSFLVM 140 (341)
Q Consensus 78 ~e~~~~~L~~EIe~LKr-Dq~~L~qEL~rLRQqqq~~~-~el~~leeRLq~~EqrQQQMmsFLak 140 (341)
+..+...|..|++.|+. .+-.+...+...|..=...+ .+..+.+++....+.|.+.+-.-|..
T Consensus 7 T~~g~~~L~~El~~L~~~~rp~i~~~i~~A~~~gDlsENaeY~aak~~q~~~e~ri~~Le~~L~~ 71 (158)
T 1grj_A 7 TLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIKDIEAKLSN 71 (158)
T ss_dssp EHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTCCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccchhhHhhHHHHHhcccccccchhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 44567788899999988 66677777766653111000 22333444444445554555555544
No 99
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=23.38 E-value=1.8e+02 Score=22.79 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 84 ALWKEVENLKAGKNALTQELLKLRQ 108 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~rLRQ 108 (341)
...+-|..|-..+..|..++..+++
T Consensus 20 syIdKVR~LEqqN~~Le~~i~~l~~ 44 (93)
T 3s4r_A 20 NLIDKVRFLEQQNKILLAELEQLKG 44 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555555555555555555544
No 100
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=23.33 E-value=1.8e+02 Score=26.43 Aligned_cols=38 Identities=18% Similarity=0.151 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 88 EVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQ 125 (341)
Q Consensus 88 EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq 125 (341)
+++.|+.....|..++..++.+...+..++.+++.|..
T Consensus 60 e~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~ 97 (213)
T 4ani_A 60 ELAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTR 97 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666667776666666777777777765
No 101
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=23.22 E-value=3.1e+02 Score=22.39 Aligned_cols=30 Identities=17% Similarity=0.038 Sum_probs=24.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 82 HSALWKEVENLKAGKNALTQELLKLRQYQE 111 (341)
Q Consensus 82 ~~~L~~EIe~LKrDq~~L~qEL~rLRQqqq 111 (341)
...|..|++.++..+..|...|..+++...
T Consensus 47 iq~L~~el~~l~~~~~sLE~~l~e~e~~~~ 76 (131)
T 3tnu_A 47 MQNLEIELQSQLSMKASLENSLEETKGRYC 76 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 357888999999999999988887776543
No 102
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=23.15 E-value=3.2e+02 Score=22.58 Aligned_cols=28 Identities=14% Similarity=0.140 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 86 WKEVENLKAGKNALTQELLKLRQYQETA 113 (341)
Q Consensus 86 ~~EIe~LKrDq~~L~qEL~rLRQqqq~~ 113 (341)
+..|+.|+++...|..||.+++.+.+..
T Consensus 14 D~~Ie~Lkreie~lk~ele~l~~E~q~~ 41 (120)
T 3i00_A 14 DHLIERLYREISGLKAQLENMKTESQRV 41 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568889999999999998888776654
No 103
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=23.07 E-value=2.8e+02 Score=21.88 Aligned_cols=47 Identities=9% Similarity=0.140 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 84 ALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKS 130 (341)
Q Consensus 84 ~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~Eqr 130 (341)
.+...+..+......+..||..|.+.++.+..++-...++|.....+
T Consensus 27 ~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~k 73 (101)
T 3u1c_A 27 QAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDS 73 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 104
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=22.94 E-value=3.5e+02 Score=27.29 Aligned_cols=29 Identities=10% Similarity=-0.137 Sum_probs=24.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 80 IDHSALWKEVENLKAGKNALTQELLKLRQ 108 (341)
Q Consensus 80 ~~~~~L~~EIe~LKrDq~~L~qEL~rLRQ 108 (341)
.....+..+++.|+..++.+..+|..++.
T Consensus 44 ~~~r~~~~~~~~l~~~rN~~sk~i~~~~~ 72 (484)
T 3lss_A 44 KKWRRTQFLTEASKKLINICSKAVGAKKK 72 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34567888999999999999999988766
No 105
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=22.81 E-value=57 Score=20.70 Aligned_cols=18 Identities=33% Similarity=0.442 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019406 92 LKAGKNALTQELLKLRQY 109 (341)
Q Consensus 92 LKrDq~~L~qEL~rLRQq 109 (341)
|.-++.+|.+.|..|+|.
T Consensus 5 lefendaleqkiaalkqk 22 (28)
T 3ra3_A 5 LEFENDALEQKIAALKQK 22 (28)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 334444444444444443
No 106
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=22.70 E-value=3e+02 Score=26.92 Aligned_cols=39 Identities=21% Similarity=0.096 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 95 GKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQ 133 (341)
Q Consensus 95 Dq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQ 133 (341)
+...|..||..++++.+.+..++..+...+..++++..+
T Consensus 4 ~~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 42 (412)
T 3u06_A 4 MHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQ 42 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888999888888888888888888777655443
No 107
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=22.66 E-value=2.2e+02 Score=20.45 Aligned_cols=38 Identities=21% Similarity=0.189 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 83 SALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLL 120 (341)
Q Consensus 83 ~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~l 120 (341)
..+..++..|-..+..|..-|.+-|++...+..++..+
T Consensus 12 ~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 12 HQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35666677777777777777777776666666655443
No 108
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=22.12 E-value=2.1e+02 Score=20.06 Aligned_cols=9 Identities=44% Similarity=0.615 Sum_probs=4.0
Q ss_pred HHHHHHHHH
Q 019406 99 LTQELLKLR 107 (341)
Q Consensus 99 L~qEL~rLR 107 (341)
|..|++.|+
T Consensus 5 lkselqalk 13 (48)
T 1g6u_A 5 LKSELQALK 13 (48)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444444
No 109
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=21.75 E-value=2.6e+02 Score=21.04 Aligned_cols=15 Identities=27% Similarity=0.718 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 019406 114 DNKLLLLRDRVQGME 128 (341)
Q Consensus 114 ~~el~~leeRLq~~E 128 (341)
..++..+..|++.+|
T Consensus 40 E~ev~~L~kKiq~lE 54 (81)
T 1ic2_A 40 EDELVALQKKLKGTE 54 (81)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334444444333
No 110
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=21.47 E-value=2.2e+02 Score=22.55 Aligned_cols=29 Identities=21% Similarity=0.261 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 86 WKEVENLKAGKNALTQELLKLRQYQETAD 114 (341)
Q Consensus 86 ~~EIe~LKrDq~~L~qEL~rLRQqqq~~~ 114 (341)
..|.+.|......|..|+..|++.++.+.
T Consensus 45 L~EN~~Lh~~ie~l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 45 LKENEKLHKEIEQKDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45888888888888888888888876543
No 111
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=21.46 E-value=3.1e+02 Score=24.73 Aligned_cols=45 Identities=18% Similarity=0.181 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 89 VENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQ 133 (341)
Q Consensus 89 Ie~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQ 133 (341)
|..|-.++..|.++|....++...+..+++.+++.....+..-.+
T Consensus 22 V~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~ 66 (190)
T 4emc_A 22 VANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQ 66 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
No 112
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=21.10 E-value=2.2e+02 Score=22.11 Aligned_cols=33 Identities=24% Similarity=0.278 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 89 VENLKAGKNALTQELLKLRQYQETADNKLLLLR 121 (341)
Q Consensus 89 Ie~LKrDq~~L~qEL~rLRQqqq~~~~el~~le 121 (341)
+..++.....+..+|..|+..+..+..++..+.
T Consensus 5 ~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~ 37 (112)
T 1l8d_A 5 LEELETKKTTIEEERNEITQRIGELKNKIGDLK 37 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555555444444444443333
No 113
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=20.52 E-value=2.4e+02 Score=21.46 Aligned_cols=26 Identities=12% Similarity=0.069 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406 85 LWKEVENLKAGKNALTQELLKLRQYQ 110 (341)
Q Consensus 85 L~~EIe~LKrDq~~L~qEL~rLRQqq 110 (341)
+..|.+.+..-...|..+|.++|++-
T Consensus 3 l~~e~~~~~~~i~~lE~eL~~~r~e~ 28 (74)
T 2xv5_A 3 SARERDTSRRLLAEKEREMAEMRARM 28 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555443
No 114
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=20.07 E-value=1.1e+02 Score=19.20 Aligned_cols=22 Identities=41% Similarity=0.438 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019406 85 LWKEVENLKAGKNALTQELLKL 106 (341)
Q Consensus 85 L~~EIe~LKrDq~~L~qEL~rL 106 (341)
|.+|+-.||.+..+|..|+..|
T Consensus 5 lkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 5 LKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhHHHHHHHHHhcc
Confidence 5566777777777777666554
Done!