BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019408
(341 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DUL|A Chain A, Crystal Structure Of Trna G26 Methyltransferase Trm1 In
Apo Form From Pyrococcus Horikoshii
pdb|2EJT|A Chain A, Complex Structure Of Trm1 From Pyrococcus Horikoshii With
S-Adenosyl- L-Methionine
pdb|2EJU|A Chain A, Complex Structure Of Trm1 From Pyrococcus Horikoshii With
S-Adenosyl- L-Homocystein
pdb|2YTZ|A Chain A, Complex Structure Of Trm1 From Pyrococcus Horikoshii With
S- Adenosyl-l-homocystein In The Orthorhombic
Crystal-lattice
pdb|2YTZ|B Chain B, Complex Structure Of Trm1 From Pyrococcus Horikoshii With
S- Adenosyl-l-homocystein In The Orthorhombic
Crystal-lattice
Length = 378
Score = 104 bits (259), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 91/348 (26%), Positives = 146/348 (41%), Gaps = 37/348 (10%)
Query: 1 MCGCGIRSLRYLAEAKADFVMAND-GNDAH----RRVILGNLKSIERGSGD-----EKRW 50
+ GIR +R+ E A+ V ND DA+ R V+L + G EK
Sbjct: 55 LSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTI 114
Query: 51 VVTHFDANRVLSECYLKREXXXXXXXXXXXXXXXXXRTVFNAVKRDGLLYLTSTDGYSSG 110
V+ H DANR+++E + T + KR G+L +T+TDG
Sbjct: 115 VINHDDANRLMAE---RHRYFHFIDLDPFGSPMEFLDTALRSAKRRGILGVTATDGAPLC 171
Query: 111 GHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYSYHGPVFRV 170
G P L Y A L +E+G R+L+G R A+ + + +YY H FR
Sbjct: 172 GAHPRACLRKYLAVPLRGELCHEVGTRILVGVIARYAAKYDLGIDVILAYYKDH--YFRA 229
Query: 171 MLRVH---RKALPDNRHYGFISYCNHCGNSQAYSWEELGQMSCPCSNTIGSSSLVVSGPL 227
+++ RK G+I + + G EL Q P GP+
Sbjct: 230 FVKLKDGARKGDETLEKLGYIYFDDKTGKF------ELEQGFLPTRPN-------AYGPV 276
Query: 228 WTGPLHDATHITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASR 287
W GPL D ++KM+ AE L K++ + +D +P Y + R
Sbjct: 277 WLGPLKDEKIVSKMVKEAESLSLARKKQALKLLKMIDQELD-----IPLFY-DTHAIGRR 330
Query: 288 AKMNSPSLKTMMSAVQKEGYVASRSHIASNAIKTNCPMVACIRIAKEL 335
K+ + ++ ++SA++++GY A+R+H + IKT+ P I K +
Sbjct: 331 LKIETKKVEEIISALREQGYEATRTHFSPTGIKTSAPYEVFIETIKRI 378
>pdb|3AXS|A Chain A, Complex Structure Of Trna Methyltransferase Trm1 From
Aquifex Aeolicus With Sinefungin
pdb|3AXT|A Chain A, Complex Structure Of Trna Methyltransferase Trm1 From
Aquifex Aeolicus With S-Adenosyl-L-Methionine
Length = 392
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 83/347 (23%), Positives = 144/347 (41%), Gaps = 28/347 (8%)
Query: 1 MCGCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANR 59
+ GIR++R+L E + AND + ++ N K + E R+ + +AN
Sbjct: 60 LSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKL---NNIPEDRYEIHGMEAN- 115
Query: 60 VLSECYLKRE---XXXXXXXXXXXXXXXXXRTVFNAVKRDGLLYLTSTDGYSSGGHRPNN 116
+L++E +V ++KR G+L LT+TD G P
Sbjct: 116 ----FFLRKEWGFGFDYVDLDPFGTPVPFIESVALSMKRGGILSLTATDTAPLSGTYPKT 171
Query: 117 SLASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYSYH-GPVFRVMLRVH 175
+ Y A L + +E+G+R+LI + A+ + P+F+Y H +F V R
Sbjct: 172 CMRRYMARPLRNEFKHEVGIRILIKKVIELAAQYDIAMIPIFAYSHLHYFKLFFVKERGV 231
Query: 176 RKALPDNRHYGFISYCNHCGNSQAYSWEELGQMSCP-CSNTIGSSSLVVSGPLWTGPLHD 234
K +G+I YC +C N + + + CP C S + GPLW G L D
Sbjct: 232 EKVDKLIEQFGYIQYCFNCMNREVVTDLYKFKEKCPHC-----GSKFHIGGPLWIGKLWD 286
Query: 235 ATHITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNSPS 294
+ A+K + T K + ++I E G+ L ++A + K+ P+
Sbjct: 287 EEFTNFLYEEAQKREEIEKET-----KRILKLIKEESQLQTVGFYVLSKLAEKVKL--PA 339
Query: 295 LKTMMSAVQKEGYVASRSHIASNAIKTNCPMVACIRIAKELQGCQKN 341
+ AV+ + R+H + +TN ++ +EL+ QK
Sbjct: 340 QPPIRIAVK--FFNGVRTHFVGDGFRTNLSFEEVMKKMEELKEKQKE 384
>pdb|2G82|O Chain O, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|P Chain P, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|Q Chain Q, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|R Chain R, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|A Chain A, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|B Chain B, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|C Chain C, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|D Chain D, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
Length = 331
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 297 TMMSAVQKEGYVASRSHIASNAIKTNCPMVACIRIAKELQGCQK 340
T++ V E Y SR HI SNA T + +++ +E G +K
Sbjct: 126 TIVMGVNHEAYDPSRHHIISNASXTTNSLAPVMKVLEEAFGVEK 169
>pdb|3ALM|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant C294a
pdb|3ALM|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant C294a
Length = 379
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 54/127 (42%), Gaps = 15/127 (11%)
Query: 105 DGYSSGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYY--- 161
+G+ H ++ L ++GA I Y GLR+L G + QG H P + +
Sbjct: 33 NGWDVRLHEKSSELRAFGAGI----YLWHNGLRVLEGLGALDDVLQGSHTPPTYETWMHN 88
Query: 162 ------SYHGPVFRVMLRVHRKALPDNRHYGFISYCNHCGNSQAYSWEELGQMSCPCSNT 215
+++G +R+M R H NR + NS+A + + +G+++
Sbjct: 89 KSVSKETFNGLPWRIMTRSHLHDALVNRARAL--GVDISVNSEAVAADPVGRLTLQTGEV 146
Query: 216 IGSSSLV 222
+ + +V
Sbjct: 147 LEADLIV 153
>pdb|3ALL|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270a
pdb|3ALL|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270a
Length = 379
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 54/127 (42%), Gaps = 15/127 (11%)
Query: 105 DGYSSGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYY--- 161
+G+ H ++ L ++GA I Y GLR+L G + QG H P + +
Sbjct: 33 NGWDVRLHEKSSELRAFGAGI----YLWHNGLRVLEGLGALDDVLQGSHTPPTYETWMHN 88
Query: 162 ------SYHGPVFRVMLRVHRKALPDNRHYGFISYCNHCGNSQAYSWEELGQMSCPCSNT 215
+++G +R+M R H NR + NS+A + + +G+++
Sbjct: 89 KSVSKETFNGLPWRIMTRSHLHDALVNRARAL--GVDISVNSEAVAADPVGRLTLQTGEV 146
Query: 216 IGSSSLV 222
+ + +V
Sbjct: 147 LEADLIV 153
>pdb|3ALK|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270f
Length = 379
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 54/127 (42%), Gaps = 15/127 (11%)
Query: 105 DGYSSGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYY--- 161
+G+ H ++ L ++GA I Y GLR+L G + QG H P + +
Sbjct: 33 NGWDVRLHEKSSELRAFGAGI----YLWHNGLRVLEGLGALDDVLQGSHTPPTYETWMHN 88
Query: 162 ------SYHGPVFRVMLRVHRKALPDNRHYGFISYCNHCGNSQAYSWEELGQMSCPCSNT 215
+++G +R+M R H NR + NS+A + + +G+++
Sbjct: 89 KSVSKETFNGLPWRIMTRSHLHDALVNRARAL--GVDISVNSEAVAADPVGRLTLQTGEV 146
Query: 216 IGSSSLV 222
+ + +V
Sbjct: 147 LEADLIV 153
>pdb|3ALH|A Chain A, Higher Resolution And Native Structure Of
2-Methyl-3-Hydroxypyridine- 5-Carboxylic Acid Oxygenase
pdb|3ALH|B Chain B, Higher Resolution And Native Structure Of
2-Methyl-3-Hydroxypyridine- 5-Carboxylic Acid Oxygenase
pdb|3ALI|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
5-Pyridoxic Acid Bound Form
pdb|3ALI|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
5-Pyridoxic Acid Bound Form
pdb|3ALJ|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Reduced Form
Length = 379
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 54/127 (42%), Gaps = 15/127 (11%)
Query: 105 DGYSSGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYY--- 161
+G+ H ++ L ++GA I Y GLR+L G + QG H P + +
Sbjct: 33 NGWDVRLHEKSSELRAFGAGI----YLWHNGLRVLEGLGALDDVLQGSHTPPTYETWMHN 88
Query: 162 ------SYHGPVFRVMLRVHRKALPDNRHYGFISYCNHCGNSQAYSWEELGQMSCPCSNT 215
+++G +R+M R H NR + NS+A + + +G+++
Sbjct: 89 KSVSKETFNGLPWRIMTRSHLHDALVNRARAL--GVDISVNSEAVAADPVGRLTLQTGEV 146
Query: 216 IGSSSLV 222
+ + +V
Sbjct: 147 LEADLIV 153
>pdb|3GMC|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
With Substrate Bound
pdb|3GMC|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
With Substrate Bound
Length = 415
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 54/127 (42%), Gaps = 15/127 (11%)
Query: 105 DGYSSGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYY--- 161
+G+ H ++ L ++GA I Y GLR+L G + QG H P + +
Sbjct: 69 NGWDVRLHEKSSELRAFGAGI----YLWHNGLRVLEGLGALDDVLQGSHTPPTYETWMHN 124
Query: 162 ------SYHGPVFRVMLRVHRKALPDNRHYGFISYCNHCGNSQAYSWEELGQMSCPCSNT 215
+++G +R+M R H NR + NS+A + + +G+++
Sbjct: 125 KSVSKETFNGLPWRIMTRSHLHDALVNRARAL--GVDISVNSEAVAADPVGRLTLQTGEV 182
Query: 216 IGSSSLV 222
+ + +V
Sbjct: 183 LEADLIV 189
>pdb|2CWL|A Chain A, Crystal Structure Of Manganese-Free Form Of Pseudocatalase
From Thermus Thermophilus Hb8
pdb|2CWL|B Chain B, Crystal Structure Of Manganese-Free Form Of Pseudocatalase
From Thermus Thermophilus Hb8
Length = 302
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 29/65 (44%)
Query: 173 RVHRKALPDNRHYGFISYCNHCGNSQAYSWEELGQMSCPCSNTIGSSSLVVSGPLWTGPL 232
++ +P+ + Y + + + + +LG + S G+ +VV GP GP+
Sbjct: 212 KIDNSKIPEAKKYMDLGFHRNLYRFSPEDYRDLGLIWKGASPEDGTEVVVVDGPPTGGPV 271
Query: 233 HDATH 237
DA H
Sbjct: 272 FDAGH 276
>pdb|2V8T|A Chain A, Crystal Structure Of Mn Catalase From Thermus Thermophilus
Complexed With Chloride
pdb|2V8T|B Chain B, Crystal Structure Of Mn Catalase From Thermus Thermophilus
Complexed With Chloride
pdb|2V8U|A Chain A, Atomic Resolution Structure Of Mn Catalase From Thermus
Thermophilus
pdb|2V8U|B Chain B, Atomic Resolution Structure Of Mn Catalase From Thermus
Thermophilus
Length = 302
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 29/65 (44%)
Query: 173 RVHRKALPDNRHYGFISYCNHCGNSQAYSWEELGQMSCPCSNTIGSSSLVVSGPLWTGPL 232
++ +P+ + Y + + + + +LG + S G+ +VV GP GP+
Sbjct: 212 KIDNSKIPEAKKYMDLGFHRNLYRFSPEDYRDLGLIWKGASPEDGTEVVVVDGPPTGGPV 271
Query: 233 HDATH 237
DA H
Sbjct: 272 FDAGH 276
>pdb|1CER|O Chain O, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|P Chain P, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|Q Chain Q, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|R Chain R, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|A Chain A, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|B Chain B, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|C Chain C, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|D Chain D, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
Length = 331
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 297 TMMSAVQKEGYVASRSHIASNAIKTNCPMVACIRIAKELQGCQK 340
T++ V E Y SR HI SNA T + +++ +E G +K
Sbjct: 126 TIVMGVNHEAYDPSRHHIISNASCTTNSLAPVMKVLEEAFGVEK 169
>pdb|1ST8|A Chain A, Crystal Structure Of Fructan 1-Exohydrolase Iia From
Cichorium Intybus
pdb|2ADD|A Chain A, Crystal Structure Of Fructan 1-Exohydrolase Iia From
Cichorium Intybus In Complex With Sucrose
pdb|2ADE|A Chain A, Crystal Structure Of Fructan 1-Exohydrolase Iia From
Cichorium Intybus In Complex With Fructose
pdb|2AEY|A Chain A, Crystal Structure Of Fructan 1-Exohydrolase Iia From
Cichorium Intybus In Complex With 2,5
Dideoxy-2,5-Immino-D-Mannitol
Length = 543
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 113 RPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREASAQG 151
R N SYGA++ P S EI LR LI ++ E+ G
Sbjct: 449 RSNIDTTSYGAFVDIDPRSEEISLRNLIDHSIIESFGAG 487
>pdb|2AEZ|A Chain A, Crystal Structure Of Fructan 1-Exohydrolase Iia (E201q)
From Cichorium Intybus In Complex With 1-Kestose
Length = 543
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 113 RPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREASAQG 151
R N SYGA++ P S EI LR LI ++ E+ G
Sbjct: 449 RSNIDTTSYGAFVDIDPRSEEISLRNLIDHSIIESFGAG 487
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,792,711
Number of Sequences: 62578
Number of extensions: 372236
Number of successful extensions: 776
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 761
Number of HSP's gapped (non-prelim): 16
length of query: 341
length of database: 14,973,337
effective HSP length: 100
effective length of query: 241
effective length of database: 8,715,537
effective search space: 2100444417
effective search space used: 2100444417
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)