BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019408
(341 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B6YUU9|TRM1_THEON tRNA (guanine(26)-N(2))-dimethyltransferase OS=Thermococcus
onnurineus (strain NA1) GN=trm1 PE=3 SV=1
Length = 377
Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 106/347 (30%), Positives = 163/347 (46%), Gaps = 35/347 (10%)
Query: 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGD----------EKRW 50
+ GIR +RY E A + ND N R+I+ N+K G + EK
Sbjct: 55 LSATGIRGIRYALETPAGEIWLNDINPNAFRLIVDNVKLNFSGELEIEGKMAVLEGEKTL 114
Query: 51 VVTHFDANRVLSECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTD-GYSS 109
VVT+ DANR+++E + +FD +D+D FGS FL + AVKR G+L +T+TD G
Sbjct: 115 VVTNADANRLMNEQF---RYFDFVDLDPFGSPMEFLDSALRAVKRRGVLAITATDTGVLC 171
Query: 110 GGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYSYHGPVFR 169
G +R N L Y A + +E GLR+LIG VR A+ V L +YY H FR
Sbjct: 172 GAYR-NACLRKYLAEPIRGELCHEAGLRILIGTLVRYAAKYDLGVEVLLAYYRDH--YFR 228
Query: 170 VMLRVHRKALPDNRHYGFISYCNHCGNSQAYSWEELGQMSCPCSNTIGSSSLVVSGPLWT 229
L++ A ++ + Y + S + +E NT S GPLW
Sbjct: 229 AFLQLRNGAKTADKSMKQLGYL-YQDESGKFEFE----------NTFLPSKATAHGPLWL 277
Query: 230 GPLHDATHITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAK 289
GPL + + ++ L+ + T +K L + DE + +PF Y +A R
Sbjct: 278 GPLKNQEFVEELHRLSAEHPLGSKKT----QKFLGLLKDELE--VPFFY-DTHAVARRHG 330
Query: 290 MNSPSLKTMMSAVQKEGYVASRSHIASNAIKTNCPMVACIRIAKELQ 336
+ L ++ + ++GY A+R+H + A+KT+ P + +ELQ
Sbjct: 331 LEVRKLAGVIEILYEKGYKATRTHFSPTALKTDAPFEEVLEALRELQ 377
>sp|O59493|TRM1_PYRHO tRNA (guanine(26)-N(2))-dimethyltransferase OS=Pyrococcus
horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 /
NBRC 100139 / OT-3) GN=trm1 PE=1 SV=1
Length = 381
Score = 132 bits (332), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 100/348 (28%), Positives = 157/348 (45%), Gaps = 37/348 (10%)
Query: 1 MCGCGIRSLRYLAEAKADFVMAND-GNDAH----RRVILGNLKSIERGSGD-----EKRW 50
+ GIR +R+ E A+ V ND DA+ R V+L + G EK
Sbjct: 58 LSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTI 117
Query: 51 VVTHFDANRVLSECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSG 110
V+ H DANR+++E + +F ID+D FGS FL T + KR G+L +T+TDG
Sbjct: 118 VINHDDANRLMAE---RHRYFHFIDLDPFGSPMEFLDTALRSAKRRGILGVTATDGAPLC 174
Query: 111 GHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYSYHGPVFRV 170
G P L Y A L +E+G R+L+G R A+ + + +YY H FR
Sbjct: 175 GAHPRACLRKYLAVPLRGELCHEVGTRILVGVIARYAAKYDLGIDVILAYYKDH--YFRA 232
Query: 171 MLRVH---RKALPDNRHYGFISYCNHCGNSQAYSWEELGQMSCPCSNTIGSSSLVVSGPL 227
+++ RK G+I + + G EL Q P GP+
Sbjct: 233 FVKLKDGARKGDETLEKLGYIYFDDKTGKF------ELEQGFLPTRPN-------AYGPV 279
Query: 228 WTGPLHDATHITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASR 287
W GPL D ++KM+ AE L K++ + +D +P Y + R
Sbjct: 280 WLGPLKDEKIVSKMVKEAESLSLARKKQALKLLKMIDQELD-----IPLFY-DTHAIGRR 333
Query: 288 AKMNSPSLKTMMSAVQKEGYVASRSHIASNAIKTNCPMVACIRIAKEL 335
K+ + ++ ++SA++++GY A+R+H + IKT+ P I K +
Sbjct: 334 LKIETKKVEEIISALREQGYEATRTHFSPTGIKTSAPYEVFIETIKRI 381
>sp|Q9V1P3|TRM1_PYRAB tRNA (guanine(26)-N(2))-dimethyltransferase OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=trm1 PE=3 SV=2
Length = 379
Score = 126 bits (316), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 95/344 (27%), Positives = 157/344 (45%), Gaps = 37/344 (10%)
Query: 1 MCGCGIRSLRYLAEAKADFVMAND-GNDAH---RRVILGNLK-SIERGSG-----DEKRW 50
+ GIR +R+ E A+ + ND DA+ ++ +L N K +E +G EK
Sbjct: 55 LSATGIRGIRFALETPAEEIWMNDISEDAYNLMKKNVLLNFKGELEESNGRAVLKSEKTL 114
Query: 51 VVTHFDANRVLSECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSG 110
VV H DANR+++E K +F ID+D FGS FL T +VKR G+L +T+TDG
Sbjct: 115 VVNHDDANRLMAE---KHRYFHFIDLDPFGSPMEFLDTALRSVKRKGILGITATDGAPLC 171
Query: 111 GHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYSYHGPVFRV 170
G P + Y A L +E+G R+L+G R A+ + + +YY H FR
Sbjct: 172 GAHPKACMRKYLAVPLRGELCHEVGTRILVGVVARYAAKYDLGIEVILAYYKDH--YFRA 229
Query: 171 MLRVH---RKALPDNRHYGFISYCNHCGNSQAYSWEELGQMSCPCSNTIGSSSLVVSGPL 227
+++ RK + G+I + G + + S GP+
Sbjct: 230 FIKLKDGARKGDESLENLGYIYFDESTGKFE-------------VERSFLPSKPNAYGPV 276
Query: 228 WTGPLHDATHITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASR 287
W GPL + +ML ++++ L K+L DE D +P Y + R
Sbjct: 277 WLGPLKSQEIVEEMLEISQQLSLARKKQAVKLLKILK---DELD--VPLFY-DTHGLGRR 330
Query: 288 AKMNSPSLKTMMSAVQKEGYVASRSHIASNAIKTNCPMVACIRI 331
K+ + ++ +++ ++ GY ASR+H + +KT+ P + +
Sbjct: 331 LKIEARKIEEIINELRSLGYRASRTHFSPTGVKTDAPYEVFVNV 374
>sp|Q97ZH0|TRM1_SULSO tRNA (guanine(26)-N(2))-dimethyltransferase OS=Sulfolobus
solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 /
P2) GN=trm1 PE=3 SV=1
Length = 378
Score = 123 bits (309), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 98/328 (29%), Positives = 168/328 (51%), Gaps = 32/328 (9%)
Query: 1 MCGCGIRSLRYLAEA-KADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANR 59
+ GIR +RY E+ K++ ++ ND N +I N K+ +G E + DAN
Sbjct: 63 LSATGIRGIRYYVESWKSEQLILNDKNPNATSLIQINAKN----NGIENAKIYNK-DANA 117
Query: 60 VLSECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLA 119
+L E D IDID FGS + F+ + NA R+G++ T+TD G P +
Sbjct: 118 LLYEVKS-----DYIDIDPFGSPAPFILSSLNAATRNGIVAFTATDLSPLEGSSPTSCRR 172
Query: 120 SYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYSYHGPVFRVMLRVH---R 176
Y A + S E+GLR+LIG +REA+ V PLFS+Y+ + +R+ +RV R
Sbjct: 173 KYDAINHKLSSSKELGLRVLIGKIIREAAILEKTVYPLFSFYADY--YYRLFVRVENGAR 230
Query: 177 KALPD-NRHYGFISYCNHCGNSQAYSWEELGQMSCPCSNTIGSSSLVVSGPLWTGPLHDA 235
KA + N+H + C CG Q + EE + CP I S + GPL+ GPL+
Sbjct: 231 KADDNINKHLKYFGECPRCG-FQTFV-EENCKTKCPVCGEIFS----IIGPLYIGPLYSM 284
Query: 236 THITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNS-PS 294
+ ++++L + ++ + ++KLL+ + E + R + + ++AS+ K+++ P
Sbjct: 285 EFLKRIMDLYSNFNYL--TSFNRIQKLLN--VIEKEARFKNVFYNISKLASKLKISAIPP 340
Query: 295 LKTMMSAVQKEGYVASRSHIASNAIKTN 322
+++++ + ASR+H A I+T+
Sbjct: 341 IESILECLGD----ASRTHFAPTGIRTD 364
>sp|C5A6N2|TRM1_THEGJ tRNA (guanine(26)-N(2))-dimethyltransferase OS=Thermococcus
gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
GN=trm1 PE=3 SV=1
Length = 378
Score = 122 bits (305), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 103/343 (30%), Positives = 156/343 (45%), Gaps = 36/343 (10%)
Query: 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLK-------SIERGSGD----EKR 49
+ GIR LRY E A+ V ND N+ R+IL NL+ + G + EKR
Sbjct: 55 LSATGIRGLRYSLETSAEEVWMNDINEDAFRLILKNLELNFGSKPVLANGRAELGLPEKR 114
Query: 50 WVVTHFDANRVLSECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTD-GYS 108
VV DAN+++SE + +FD ID+D FGS FL + +V+R G L LT+TD G
Sbjct: 115 LVVNLGDANKLMSENF---RYFDFIDLDPFGSPVEFLDSALRSVRRRGFLGLTATDTGVL 171
Query: 109 SGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYSYHGPVF 168
G +R Y A + +E GLR+LIG VR A+ V L +YY H F
Sbjct: 172 CGAYR-RACRRKYLAEPIRGELCHEAGLRILIGTIVRYAAKYDLGVEVLLAYYRDH--YF 228
Query: 169 RVMLRVHRKALPDNRHYGFISYCNHCGNSQAYSWE-ELGQMSCPCSNTIGSSSLVVSGPL 227
RV LR+ A + + Y W+ E G+ G GP+
Sbjct: 229 RVFLRLRSGAKKADESVELLGYL----------WQDETGKFKYERDFLPGKRG--AYGPM 276
Query: 228 WTGPLHDATHITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASR 287
W GPL + + +++ L + T + LS +++E D +PF Y +A +
Sbjct: 277 WLGPLKNQAFLEELVRLTKTSEESISHRKTF--QFLSLLVEELD--VPFHY-DTHALARK 331
Query: 288 AKMNSPSLKTMMSAVQKEGYVASRSHIASNAIKTNCPMVACIR 330
+ + ++ + G+ A+R+H + +IKTN P +R
Sbjct: 332 NGLEVVKISRVIETLHSLGFEATRTHFSPTSIKTNAPFDVVLR 374
>sp|C3NDZ5|TRM1_SULIY tRNA (guanine(26)-N(2))-dimethyltransferase OS=Sulfolobus
islandicus (strain Y.G.57.14 / Yellowstone #1) GN=trm1
PE=3 SV=1
Length = 378
Score = 121 bits (303), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 94/340 (27%), Positives = 171/340 (50%), Gaps = 28/340 (8%)
Query: 1 MCGCGIRSLRYLAEA-KADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANR 59
+ GIR +RY E+ K++ ++ ND N +I N+K+ +G E + DAN
Sbjct: 63 LSATGIRGIRYYVESWKSEQLILNDKNSTAASLIQINVKN----NGIENAKIYNK-DANA 117
Query: 60 VLSECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLA 119
+L E +K E+ IDID FGS F+ + NA R+G++ T+TD G +
Sbjct: 118 LLYE--IKSEY---IDIDPFGSPVPFILSSVNATIRNGIVAFTATDLSPLEGSSRTSCRR 172
Query: 120 SYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYS-YHGPVFRVMLRVHRKA 178
Y A + S E+GLR+LIG +REA+ V PLFS+Y+ Y+ +F ++ RKA
Sbjct: 173 KYDAINYKLSSSKELGLRILIGKIIREAATLEKTVHPLFSFYADYYYRLFAIVESGARKA 232
Query: 179 LPD-NRHYGFISYCNHCGNSQAYSWEELGQMSCPCSNTIGSSSLVVSGPLWTGPLHDATH 237
+ N++ + C CG ++ +C I + ++ GPL+ GPLH+
Sbjct: 233 DENINKNLKYFGECPRCG------FQTFVDENCKTKCPICGENFIIIGPLYIGPLHNMEF 286
Query: 238 ITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNS-PSLK 296
+ +M++ + ++ + ++KLL+ + E + + + + ++AS+ K+++ P +
Sbjct: 287 LKRMIDTYSDFNYL--SSFNRIQKLLN--VIEKEAKYKSVFYNISKLASKLKVSAIPPID 342
Query: 297 TMMSAVQKEGYVASRSHIASNAIKTNCPMVACIRIAKELQ 336
+++ + AS++H A I+T+ IR K L+
Sbjct: 343 SILECLGD----ASKTHFAPTGIRTDKGYEEIIRCVKSLR 378
>sp|C3NHQ8|TRM1_SULIN tRNA (guanine(26)-N(2))-dimethyltransferase OS=Sulfolobus
islandicus (strain Y.N.15.51 / Yellowstone #2) GN=trm1
PE=3 SV=1
Length = 378
Score = 121 bits (303), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 94/340 (27%), Positives = 171/340 (50%), Gaps = 28/340 (8%)
Query: 1 MCGCGIRSLRYLAEA-KADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANR 59
+ GIR +RY E+ K++ ++ ND N +I N+K+ +G E + DAN
Sbjct: 63 LSATGIRGIRYYVESWKSEQLILNDKNSTAASLIQINVKN----NGIENAKIYNK-DANA 117
Query: 60 VLSECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLA 119
+L E +K E+ IDID FGS F+ + NA R+G++ T+TD G +
Sbjct: 118 LLYE--IKSEY---IDIDPFGSPVPFILSSVNATIRNGIVAFTATDLSPLEGSSRTSCRR 172
Query: 120 SYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYS-YHGPVFRVMLRVHRKA 178
Y A + S E+GLR+LIG +REA+ V PLFS+Y+ Y+ +F ++ RKA
Sbjct: 173 KYDAINYKLSSSKELGLRILIGKIIREAATLEKTVHPLFSFYADYYYRLFAIVESGARKA 232
Query: 179 LPD-NRHYGFISYCNHCGNSQAYSWEELGQMSCPCSNTIGSSSLVVSGPLWTGPLHDATH 237
+ N++ + C CG ++ +C I + ++ GPL+ GPLH+
Sbjct: 233 DENINKNLKYFGECPRCG------FQTFVDENCKTKCPICGENFIIIGPLYIGPLHNMEF 286
Query: 238 ITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNS-PSLK 296
+ +M++ + ++ + ++KLL+ + E + + + + ++AS+ K+++ P +
Sbjct: 287 LKRMIDTYSDFNYL--SSFNRIQKLLN--VIEKEAKYKSVFYNISKLASKLKVSAIPPID 342
Query: 297 TMMSAVQKEGYVASRSHIASNAIKTNCPMVACIRIAKELQ 336
+++ + AS++H A I+T+ IR K L+
Sbjct: 343 SILECLGD----ASKTHFAPTGIRTDKGYEEIIRCVKSLR 378
>sp|P81554|TRM1_PYRFU tRNA (guanine(26)-N(2))-dimethyltransferase OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=trm1
PE=1 SV=1
Length = 381
Score = 121 bits (303), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 96/344 (27%), Positives = 156/344 (45%), Gaps = 30/344 (8%)
Query: 1 MCGCGIRSLRYLAEAKADFVMANDGNDA----HRRVILGNLKSIERGSGD------EKRW 50
+ GIR +R+ E A+ + ND N+ ++ +L N K + + EK
Sbjct: 57 LSATGIRGIRFALETPAEEIWMNDINELAYELMKKNVLLNFKGTLKENAKRAIFEGEKTI 116
Query: 51 VVTHFDANRVLSECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSG 110
V+ + DANR+++E K +F ID+D FGS FL T +VKR G+L +T+TDG
Sbjct: 117 VINNDDANRLMAE---KHRYFHFIDLDPFGSPMEFLDTALRSVKRKGILGVTATDGAPLC 173
Query: 111 GHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYSYHGPVFRV 170
G P L Y A L +E+G R+L+G R A+ + L +YY H FR
Sbjct: 174 GAHPKACLRKYLAVPLRGELCHEVGTRILVGVIARYAAKYDLGMEVLLAYYKDH--YFRA 231
Query: 171 MLRVHRKALPDNRHYGFISYCNHCGNSQAYSWEELGQMSCPCSNTIGSSSLVVSGPLWTG 230
+++ A + + Y Y E+ G+ + S+ GPLW G
Sbjct: 232 FVKLKDGAKKGDETLENLGYV--------YFDEKTGRFE--VEKSFLSTRPNAYGPLWLG 281
Query: 231 PLHDATHITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKM 290
PL + + +ML L V + ++ KLL + +E D +P Y + R K+
Sbjct: 282 PLKNEKVVGEMLELLVSGFEVAN--YREVLKLLHMLHEELD--IPLFY-DTHALGKRLKI 336
Query: 291 NSPSLKTMMSAVQKEGYVASRSHIASNAIKTNCPMVACIRIAKE 334
L ++ ++ GY A+R+H + IKTN P + + ++
Sbjct: 337 EPKKLGEIIKELKSMGYEATRTHFSPTGIKTNAPYEVFVEVMRK 380
>sp|C3MYQ9|TRM1_SULIM tRNA (guanine(26)-N(2))-dimethyltransferase OS=Sulfolobus
islandicus (strain M.14.25 / Kamchatka #1) GN=trm1 PE=3
SV=1
Length = 378
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 94/340 (27%), Positives = 171/340 (50%), Gaps = 28/340 (8%)
Query: 1 MCGCGIRSLRYLAEA-KADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANR 59
+ GIR +RY E+ K++ ++ ND N +I N+K+ +G E + DAN
Sbjct: 63 LSATGIRGIRYYVESWKSEQLILNDKNSTAASLIQINVKN----NGIENAKIYNK-DANA 117
Query: 60 VLSECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLA 119
+L E +K E+ IDID FGS F+ + NA R+G++ T+TD G +
Sbjct: 118 LLYE--IKSEY---IDIDPFGSPVPFILSSINATIRNGIVAFTATDLSPLEGSSRTSCRR 172
Query: 120 SYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYS-YHGPVFRVMLRVHRKA 178
Y A + S E+GLR+LIG +REA+ V PLFS+Y+ Y+ +F ++ RKA
Sbjct: 173 KYDAINYKLSSSKELGLRILIGKIIREAATLEKTVHPLFSFYADYYYRLFVIVESGARKA 232
Query: 179 LPD-NRHYGFISYCNHCGNSQAYSWEELGQMSCPCSNTIGSSSLVVSGPLWTGPLHDATH 237
+ N++ + C CG ++ +C I + ++ GPL+ GPLH+
Sbjct: 233 DENINKNLKYFGECPRCG------FQTFVDENCKTKCPICGENFIIIGPLYIGPLHNMEF 286
Query: 238 ITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNS-PSLK 296
+ +M++ + ++ + ++KLL+ + E + + + + ++AS+ K+++ P +
Sbjct: 287 LKRMIDTYSDFNYL--SSFNRIQKLLN--VIEKEAKYKSVFYNISKLASKLKVSAIPPID 342
Query: 297 TMMSAVQKEGYVASRSHIASNAIKTNCPMVACIRIAKELQ 336
+++ + AS++H A I+T+ IR K L+
Sbjct: 343 SILECLGD----ASKTHFAPTGIRTDKGYEEIIRCVKSLR 378
>sp|C4KH07|TRM1_SULIK tRNA (guanine(26)-N(2))-dimethyltransferase OS=Sulfolobus
islandicus (strain M.16.4 / Kamchatka #3) GN=trm1 PE=3
SV=1
Length = 378
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 94/340 (27%), Positives = 171/340 (50%), Gaps = 28/340 (8%)
Query: 1 MCGCGIRSLRYLAEA-KADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANR 59
+ GIR +RY E+ K++ ++ ND N +I N+K+ +G E + DAN
Sbjct: 63 LSATGIRGIRYYVESWKSEQLILNDKNSTAASLIQINVKN----NGIENAKIYNK-DANA 117
Query: 60 VLSECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLA 119
+L E +K E+ IDID FGS F+ + NA R+G++ T+TD G +
Sbjct: 118 LLYE--IKSEY---IDIDPFGSPVPFILSSINATIRNGIVAFTATDLSPLEGSSRTSCRR 172
Query: 120 SYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYS-YHGPVFRVMLRVHRKA 178
Y A + S E+GLR+LIG +REA+ V PLFS+Y+ Y+ +F ++ RKA
Sbjct: 173 KYDAINYKLSSSKELGLRILIGKIIREAATLEKTVHPLFSFYADYYYRLFVIVESGARKA 232
Query: 179 LPD-NRHYGFISYCNHCGNSQAYSWEELGQMSCPCSNTIGSSSLVVSGPLWTGPLHDATH 237
+ N++ + C CG ++ +C I + ++ GPL+ GPLH+
Sbjct: 233 DENINKNLKYFGECPRCG------FQTFVDENCKTKCPICGENFIIIGPLYIGPLHNMEF 286
Query: 238 ITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNS-PSLK 296
+ +M++ + ++ + ++KLL+ + E + + + + ++AS+ K+++ P +
Sbjct: 287 LKRMIDTYSDFNYL--SSFNRIQKLLN--VIEKEAKYKSVFYNISKLASKLKVSAIPPID 342
Query: 297 TMMSAVQKEGYVASRSHIASNAIKTNCPMVACIRIAKELQ 336
+++ + AS++H A I+T+ IR K L+
Sbjct: 343 SILECLGD----ASKTHFAPTGIRTDKGYEEIIRCVKSLR 378
>sp|C3MPR5|TRM1_SULIL tRNA (guanine(26)-N(2))-dimethyltransferase OS=Sulfolobus
islandicus (strain L.S.2.15 / Lassen #1) GN=trm1 PE=3
SV=1
Length = 378
Score = 120 bits (301), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 94/340 (27%), Positives = 171/340 (50%), Gaps = 28/340 (8%)
Query: 1 MCGCGIRSLRYLAEA-KADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANR 59
+ GIR +RY E+ K++ ++ ND N +I N+K+ +G E + DAN
Sbjct: 63 LSATGIRGIRYYVESWKSEQLILNDKNSTAASLIQINVKN----NGIENAKIYNK-DANA 117
Query: 60 VLSECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLA 119
+L E +K E+ IDID FGS F+ + NA R+G++ T+TD G +
Sbjct: 118 LLYE--IKSEY---IDIDPFGSPVPFILSSVNATIRNGIVAFTATDLSPLEGSSRTSCRR 172
Query: 120 SYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYS-YHGPVFRVMLRVHRKA 178
Y A + S E+GLR+LIG +REA+ V PLFS+Y+ Y+ +F ++ RKA
Sbjct: 173 KYDAINYKLSSSKELGLRILIGKIIREAATLEKTVHPLFSFYADYYYRLFVIVESGARKA 232
Query: 179 LPD-NRHYGFISYCNHCGNSQAYSWEELGQMSCPCSNTIGSSSLVVSGPLWTGPLHDATH 237
+ N++ + C CG ++ +C I + ++ GPL+ GPLH+
Sbjct: 233 DENINKNLKYFGECPRCG------FQTFVDENCKTKCPICGENFIIIGPLYIGPLHNMEF 286
Query: 238 ITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNS-PSLK 296
+ +M++ + ++ + ++KLL+ + E + + + + ++AS+ K+++ P +
Sbjct: 287 LKRMIDTYSDFNYL--SSFNRIQKLLN--VIEKEAKYKSVFYNISKLASKLKVSAIPPID 342
Query: 297 TMMSAVQKEGYVASRSHIASNAIKTNCPMVACIRIAKELQ 336
+++ + AS++H A I+T+ IR K L+
Sbjct: 343 SILECLGD----ASKTHFAPTGIRTDKGYEEIIRCVKSLR 378
>sp|Q9YDY7|TRM1_AERPE tRNA (guanine(26)-N(2))-dimethyltransferase OS=Aeropyrum pernix
(strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138
/ K1) GN=trm1 PE=3 SV=3
Length = 407
Score = 120 bits (301), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 97/334 (29%), Positives = 163/334 (48%), Gaps = 29/334 (8%)
Query: 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKS--IERGSGDEKRWVVTHFDANR 59
G G+R +RY EA V+ ND N + N ++ +E GS +++ + ++N
Sbjct: 77 AGVGVRGVRYAVEAGYVKVIMNDINPKASMLAALNARANGLEPGS-----YMIFNKESNS 131
Query: 60 VLSECYLKREF---FDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNN 116
++ +L RE LIDID +GS + F+ + ++ +T+TD G +
Sbjct: 132 LM--FHLSRERPTPVSLIDIDPYGSPAPFVDAALALSGKGTVVAMTATDLAVLEGGKARA 189
Query: 117 SLASYGAY-ILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYSYHGPVFRVMLRVH 175
++ Y + P S E GLR+L+G R A+A V PL +YY+ H +RV + V
Sbjct: 190 AVRRYMLRSVSKTPVSKETGLRVLLGYVARVAAAHDKAVKPLLAYYADH--YYRVYVAVE 247
Query: 176 RKALPDN----RHYGFISYCNHCGNSQAYSWEELGQMSCPCSNTIGSSSLVVSGPLWTGP 231
R A + + G + YC G + A S+ E +C G S +V + P W G
Sbjct: 248 RGARRSDSMLEENLGRLVYCPETGVALALSYAEDPASAC------GGSYVVAADPAWIGS 301
Query: 232 LHDATHITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFG-YIKLDEMASRAKM 290
L D + MLN+A + W+ GT +EKLL+ + E+ P P Y+ L +AS+A++
Sbjct: 302 LGDQAFLEAMLNIAVEAVWL--GTRPRVEKLLNTLHGEA-PLSPRSIYVSLTSVASKARV 358
Query: 291 NSPSLKTMMSAVQKEGYVASRSHIASNAIKTNCP 324
N+P ++ ++ GY A +H + ++T+ P
Sbjct: 359 NTPKKSKVVELLRSMGYRAVATHFSGEGVRTDAP 392
>sp|C3N5E1|TRM1_SULIA tRNA (guanine(26)-N(2))-dimethyltransferase OS=Sulfolobus
islandicus (strain M.16.27) GN=trm1 PE=3 SV=1
Length = 378
Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/340 (27%), Positives = 170/340 (50%), Gaps = 28/340 (8%)
Query: 1 MCGCGIRSLRYLAEA-KADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANR 59
+ GIR +RY E+ K++ ++ ND N +I N+K+ +G E + DAN
Sbjct: 63 LSATGIRGIRYYVESWKSEQLILNDKNSTAASLIQINVKN----NGIENAKIFNK-DANA 117
Query: 60 VLSECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLA 119
+L E +K E+ IDID FGS F+ + NA R+G+ T+TD G +
Sbjct: 118 LLYE--IKSEY---IDIDPFGSPVPFILSSINATIRNGIAAFTATDLSPLEGSSRTSCRR 172
Query: 120 SYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYS-YHGPVFRVMLRVHRKA 178
Y A + S E+GLR+LIG +REA+ V PLFS+Y+ Y+ +F ++ RKA
Sbjct: 173 KYDAINYKLSSSKELGLRILIGKIIREAATLEKTVHPLFSFYADYYYRLFVIVESGARKA 232
Query: 179 LPD-NRHYGFISYCNHCGNSQAYSWEELGQMSCPCSNTIGSSSLVVSGPLWTGPLHDATH 237
+ N++ + C CG ++ +C I + ++ GPL+ GPLH+
Sbjct: 233 DENINKNLKYFGECPRCG------FQTFVDENCKTKCPICGENFIIIGPLYIGPLHNMEF 286
Query: 238 ITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNS-PSLK 296
+ +M++ + ++ + ++KLL+ + E + + + + ++AS+ K+++ P +
Sbjct: 287 LKRMIDTYSDFNYL--SSFNRIQKLLN--VIEKEAKYKSVFYNISKLASKLKVSAIPPID 342
Query: 297 TMMSAVQKEGYVASRSHIASNAIKTNCPMVACIRIAKELQ 336
+++ + AS++H A I+T+ IR K L+
Sbjct: 343 SILECLGD----ASKTHFAPTGIRTDKGYEEIIRCVKSLR 378
>sp|Q8ZWT5|TRM1_PYRAE tRNA (guanine(26)-N(2))-dimethyltransferase OS=Pyrobaculum
aerophilum (strain ATCC 51768 / IM2 / DSM 7523 / JCM
9630 / NBRC 100827) GN=trm1 PE=3 SV=1
Length = 363
Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 98/322 (30%), Positives = 151/322 (46%), Gaps = 40/322 (12%)
Query: 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRV 60
+ G G+R +RY E+ V ND + + K++E D + V + DAN +
Sbjct: 61 LSGTGVRGIRYAVES--GVVGKLILNDISKEAVELIKKNLEINGVDAE---VYNEDANVL 115
Query: 61 LSECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLAS 120
L + ++ D++DID FGS + F+ F A+K +GL+ T+TD G P L
Sbjct: 116 LHKL---KDSCDVVDIDPFGSPAPFIHGAFRALKEEGLICATATDTAVLVGRYPRKCLRR 172
Query: 121 YGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYSYHGPVFRVMLRVHRKALP 180
YG+ I+ P+ E+GLR L+G R A+A+ Y ++PL SY+ H FRV R A
Sbjct: 173 YGSVIVKTPFYIEVGLRNLLGYIARVAAAEDYKITPLMSYWEGH--YFRVCAYAARGARD 230
Query: 181 DNRHYGFISYCNHCGNSQAYSWEELGQMSCPCSNTIGSSSLVVSGPLWTGPLHDATHITK 240
+ ++ I+Y + E G + + GS SGPLW GPL D I K
Sbjct: 231 ADDNFHHIAYIKY----------ERGVRKILHAQSEGS-----SGPLWVGPLGDPLIINK 275
Query: 241 MLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNSPSLKTMMS 300
M + G D K+L+ S P + +L E A+ K SP+LK +
Sbjct: 276 MSEI---------GPYQDFLKILAEEYSISAP----WFYRLPEFAAGGK--SPTLKEAVG 320
Query: 301 AVQKEGYVASRSHIASNAIKTN 322
++ G A R+H+A + K +
Sbjct: 321 VLRAAGIYAVRTHMAPDGFKAD 342
>sp|Q9P804|TRM1_SCHPO tRNA (guanine(26)-N(2))-dimethyltransferase OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=trm1 PE=1 SV=1
Length = 548
Score = 118 bits (296), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 104/353 (29%), Positives = 163/353 (46%), Gaps = 50/353 (14%)
Query: 1 MCGCGIRSLRYLAE-AKADFVMANDGNDAHRRVILGNLKSIERG---SGDEKRWVVTHFD 56
+ G+RS+RY E ++AND ++ +K+IE+ + + D
Sbjct: 131 LSATGLRSIRYAKELPNVKRILAND-------LLENAVKTIEKNVNYNNVSDIVIPNKGD 183
Query: 57 ANRVLSECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTD-GYSSGGHRPN 115
AN V+ ++ + +D+ID+D +GS + FL +V +DGLL +T TD +G P
Sbjct: 184 ANAVM---HMNKFHYDVIDLDPYGSAAPFLDAAVQSVSKDGLLCITCTDSAVLAGNAYPE 240
Query: 116 NSLASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFS----YYSYHGPVFRVM 171
++YG L + +E +R L+ A+ G + PL S +Y FRV
Sbjct: 241 KCFSNYGGSSLRSNFCHEQAVRHLLYAIAASAAKYGRAIKPLLSLSIDFY------FRVF 294
Query: 172 LRVHRK-ALPDNRHYG--FISYCNHCGNSQAYSWEELGQMS---CPCSNTIGSSSLV--- 222
+++ K L N I +C+ CG +++ + LG+ S P + ++S
Sbjct: 295 VQIKAKPVLVKNLQSQSLLIYHCSGCG---SFAEQPLGKTSPGRLPGTTKFSNASGPPVS 351
Query: 223 -----------VSGPLWTGPLHDATHITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESD 271
V GPLW GPLHDA + KM +AE GT + +L+ + DE
Sbjct: 352 ANCEHCGYVHHVGGPLWGGPLHDAEFLKKMRAIAEDLDPEVYGTKRRILGMLA-LADEEL 410
Query: 272 PRLPFGYIKLDEMASRAKMNSPSLKTMMSAVQKEGYVASRSHIASNAIKTNCP 324
P +PF Y L ++ S + SP +SA+ GY S SH SNAIKTN P
Sbjct: 411 PDVPF-YFVLSQICSVLRSQSPPQNIFVSALLNAGYRVSGSHAKSNAIKTNAP 462
>sp|A4WMB7|TRM1_PYRAR tRNA (guanine(26)-N(2))-dimethyltransferase OS=Pyrobaculum
arsenaticum (strain DSM 13514 / JCM 11321) GN=trm1 PE=3
SV=1
Length = 356
Score = 115 bits (287), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 97/323 (30%), Positives = 148/323 (45%), Gaps = 40/323 (12%)
Query: 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRV 60
+ G G+R +RY E A V ND R + K++E D + V + DAN +
Sbjct: 61 LSGTGVRGIRYAVETGA--VGRLILNDISREAVELIKKNLEVNGVDAE---VYNEDANVL 115
Query: 61 LSECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLAS 120
L R+ D++DID FGS + FL+ F A++ +G++ +T+TD G P L
Sbjct: 116 LHRL---RDKCDVVDIDPFGSPAPFLQAGFRALREEGVICVTATDTAVLVGRYPKKCLRR 172
Query: 121 YGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYSYHGPVFRVMLRVHRKALP 180
YGA + P+ E GLR L G R A+++ Y PLF+Y+ H FR+ R R A
Sbjct: 173 YGAVMFKTPFYIEAGLRNLTGYVARVAASEDYGFEPLFAYWEGH--YFRLCARAVRGARD 230
Query: 181 DNRHYGFISYCNHCGNSQAYSWEELGQMSCPCSNTIGSSSLVVSGPLWTGPLHDATHITK 240
+ ++ FI Y + S+ G SL GPLW GP+ D + K
Sbjct: 231 ADSNFNFIGYVEYKKPSRK------------VVRRPGERSL---GPLWVGPMGDPILVNK 275
Query: 241 MLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNSPSLKTMMS 300
M ++G G D +LLS + P + K+ E A S ++ ++
Sbjct: 276 M----AEYGPYG-----DFLQLLSEEYSVAAP----WFFKVPEFALGGV--SRGIEEALN 320
Query: 301 AVQKEGYVASRSHIASNAIKTNC 323
A++K G A R+H+A + KT
Sbjct: 321 ALKKGGIYAVRTHMAPDGFKTEV 343
>sp|Q5JIB3|TRM1_PYRKO tRNA (guanine(26)-N(2))-dimethyltransferase OS=Pyrococcus
kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
GN=trm1 PE=3 SV=1
Length = 376
Score = 114 bits (286), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 99/349 (28%), Positives = 162/349 (46%), Gaps = 41/349 (11%)
Query: 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGS----GD------EKRW 50
+ GIR +RY E A+ V ND ++ ++ N G GD EK
Sbjct: 55 LSATGIRGIRYALETPAEEVWLNDISEEAYGLMKKNASLNIDGELYEEGDRSYLWGEKLV 114
Query: 51 VVTHFDANRVLSECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTD-GYSS 109
V+ DANR+++E + +FD +D+D FGS FL T +V+R+G+L +T+TD G
Sbjct: 115 VINKGDANRLMAENF---RYFDFLDLDPFGSPVEFLDTALRSVRRNGVLAVTATDTGVLC 171
Query: 110 GGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYSYHGPVFR 169
G +R N L Y A + P +E GLR+LIG VR A+ V L +Y+ H FR
Sbjct: 172 GAYR-NACLRKYLAEPIRGPLCHEAGLRILIGTVVRYAAKYDLGVEVLLAYHRDH--YFR 228
Query: 170 VMLRVH---RKALPDNRHYGFISYCNHCGNSQAYSWEELGQMSCPCSNTIGSSSLVVSGP 226
L++ +KA GF+ + + G + + P + SGP
Sbjct: 229 AFLKLKSGAKKADKSLSQLGFL-WADKSGR---FEYRRGFLPDKPGA----------SGP 274
Query: 227 LWTGPLHDATHITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMAS 286
LW GPL D + + ++L A T + L+ L+S +D +PF Y +A
Sbjct: 275 LWLGPLKDESFVEELLESARDHPLAHKKTLSFLQ-LISEELD-----VPFHY-DTHTLAR 327
Query: 287 RAKMNSPSLKTMMSAVQKEGYVASRSHIASNAIKTNCPMVACIRIAKEL 335
+ P L ++ +++ G+ A+++H + ++KT+ P + K +
Sbjct: 328 ACSLTPPKLDVIIQRLRELGHSATKTHFSPTSVKTDAPFGVVAEVMKNV 376
>sp|O27258|TRM1_METTH tRNA (guanine(26)-N(2))-dimethyltransferase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=trm1 PE=3 SV=1
Length = 380
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 95/325 (29%), Positives = 153/325 (47%), Gaps = 26/325 (8%)
Query: 3 GCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVL 61
G GIR++RYL E + AND N I N S+ E V+ DA+ L
Sbjct: 61 GSGIRAIRYLVEVEGVSEAFANDINPLAVECIKNN--SVINSVSPE----VSREDASIFL 114
Query: 62 SECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASY 121
+ + FD+IDID FG+ + F+ + + + + LL +T+TD S G L Y
Sbjct: 115 RSNHGR---FDVIDIDPFGTPAPFMDSAAASARNNSLLAVTATDTSSLCGTYIKPCLRKY 171
Query: 122 GAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYSYHGPVFRVMLRVH---RKA 178
+ L Y +E GLR+L G + S L S+ S H R+ +RV R+A
Sbjct: 172 SSRPLKTEYCHETGLRILAGFTAMNLARYRKAASVLLSHSSQH--YMRLYIRVRRGARRA 229
Query: 179 LPDNRHYGFISYCNHCGNSQAYSWEELGQMSCP-CSNTIGSSSLVVSGPLWTGPLHDATH 237
R+ GF+ +C C + + + + CP C + + V+GPLW G + D+
Sbjct: 230 DESIRNIGFMLHCFRCLHHEHVNGFAPLKRECPHC-----GAEMDVAGPLWVGDIQDSKF 284
Query: 238 ITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNSPSLKT 297
I +M+ E T D+ KLL +DE+ +P G+ + E+ S+ ++P L+
Sbjct: 285 IGEMIGEVENKEL---NTAGDVLKLLKGCLDEAG--MPPGFYDIHEVCSKLGRSAPPLRD 339
Query: 298 MMSAVQKEGYVASRSHIASNAIKTN 322
+M ++ G+ SR+HI I+T+
Sbjct: 340 VMDGLEAAGFRVSRTHIRPTGIRTD 364
>sp|Q8TGX6|TRM1_METAC tRNA (guanine(26)-N(2))-dimethyltransferase OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=trm1 PE=3 SV=1
Length = 388
Score = 112 bits (279), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 91/342 (26%), Positives = 154/342 (45%), Gaps = 38/342 (11%)
Query: 5 GIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSEC 64
GIR LR E M ND N +I N+K +G E++ T +AN +L E
Sbjct: 76 GIRGLRIAGEVGIHSTM-NDWNPEAFELIKENIKI----NGLEEKAQATRKNANVLLHE- 129
Query: 65 YLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYGAY 124
+ F ++D+D FG+ + +L A + G+L +T+TD G N+ + Y A
Sbjct: 130 ----QKFHIVDVDPFGTPAPYLDAAATAAQ--GMLSVTATDTAPLCGAHLNSGIRKYAAV 183
Query: 125 ILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYSYHGPVFRVMLRVHRKALPDNRH 184
L Y +E+GLR+L+G RE + + PL S+ + H +R + + LP +H
Sbjct: 184 PLNTEYHSEMGLRVLLGACARECAKHEKGMLPLLSHVTRH------YVRSYLEVLPGTKH 237
Query: 185 -------YGFISYCNHCG-NSQAYSWEELGQMSCPCSNTIGSSSLVVSGPLWTGPLHDAT 236
GF YC CG Y + CP + ++GPLW GP +
Sbjct: 238 ADRALKSMGFSIYCPKCGFRGPVYGLAVHIEKECPACGALTK----IAGPLWLGPFREPK 293
Query: 237 HITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESD-PRLPFGYIKLDEMASRAKMNSPSL 295
++L+ E T +K+++ DE D P ++ E+ + A +
Sbjct: 294 FCNEVLSELEAHPL---NTKEKAKKIITFCRDELDIPMFYDQHVICKELGASAT----GI 346
Query: 296 KTMMSAVQKEGYVASRSHIASNAIKTNCPMVACIRIAKELQG 337
+T++ A++ G+ ASR+H + + +T+ P+ +I + L G
Sbjct: 347 ETLIEALKAGGFEASRTHFSGTSFRTDAPIAEIKKIIQALSG 388
>sp|O67010|TRM1_AQUAE tRNA (guanine(26)-N(2)/guanine(27)-N(2))-dimethyltransferase
OS=Aquifex aeolicus (strain VF5) GN=trm1 PE=1 SV=1
Length = 392
Score = 112 bits (279), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 90/347 (25%), Positives = 156/347 (44%), Gaps = 28/347 (8%)
Query: 1 MCGCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANR 59
+ GIR++R+L E + AND + ++ N K + E R+ + +AN
Sbjct: 60 LSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKL---NNIPEDRYEIHGMEAN- 115
Query: 60 VLSECYLKREF---FDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNN 116
+L++E+ FD +D+D FG+ F+ +V ++KR G+L LT+TD G P
Sbjct: 116 ----FFLRKEWGFGFDYVDLDPFGTPVPFIESVALSMKRGGILSLTATDTAPLSGTYPKT 171
Query: 117 SLASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYSYH-GPVFRVMLRVH 175
+ Y A L + +E+G+R+LI + A+ + P+F+Y H +F V R
Sbjct: 172 CMRRYMARPLRNEFKHEVGIRILIKKVIELAAQYDIAMIPIFAYSHLHYFKLFFVKERGV 231
Query: 176 RKALPDNRHYGFISYCNHCGNSQAYSWEELGQMSCP-CSNTIGSSSLVVSGPLWTGPLHD 234
K +G+I YC +C N + + + CP C S + GPLW G L D
Sbjct: 232 EKVDKLIEQFGYIQYCFNCMNREVVTDLYKFKEKCPHC-----GSKFHIGGPLWIGKLWD 286
Query: 235 ATHITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNSPS 294
+ A+K + T K + ++I E G+ L ++A + K+ P+
Sbjct: 287 EEFTNFLYEEAQKREEIEKET-----KRILKLIKEESQLQTVGFYVLSKLAEKVKL--PA 339
Query: 295 LKTMMSAVQKEGYVASRSHIASNAIKTNCPMVACIRIAKELQGCQKN 341
+ AV+ + R+H + +TN ++ +EL+ QK
Sbjct: 340 QPPIRIAVK--FFNGVRTHFVGDGFRTNLSFEEVMKKMEELKEKQKE 384
>sp|O29443|TRM1_ARCFU tRNA (guanine(26)-N(2))-dimethyltransferase OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=trm1 PE=3 SV=1
Length = 349
Score = 111 bits (278), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 100/336 (29%), Positives = 154/336 (45%), Gaps = 38/336 (11%)
Query: 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRV 60
+ GIR +R EA V ND + +VI NL+ E G E V + DA V
Sbjct: 44 LSASGIRGIRAALEAGKKAVF-NDVSPKAVKVIEENLR--ENGVSGE----VINGDAAAV 96
Query: 61 LSECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLAS 120
+ ++ F+ IDID FGS + F+ + + KR L +T+TD + G N+ L
Sbjct: 97 M-----RQRAFEHIDIDPFGSPAPFMDSACFSAKR--YLSVTATDTAALCGSATNSGLKK 149
Query: 121 YGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYSYHGPVFRVMLRVHRKALP 180
YGA+ + +E+GLRMLIG VREA+ + PL S+ H +RV ++ +
Sbjct: 150 YGAFAVKTDVYHEVGLRMLIGFVVREATKYEKALFPLISWVREH--YYRVHFKIKKSTAM 207
Query: 181 DNRHY---GFISYCNHCGNSQAYSWEELGQMSCPCSNTIGSSSLVVSGPLWTGPLHDATH 237
+ Y G+++YC+ C + E G C C G SL+ GP+W G L
Sbjct: 208 SAKVYEKMGYLAYCSTCLRKKVLGMGE-GAERCECG---GKFSLI--GPIWLGEL----- 256
Query: 238 ITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNSPSLKT 297
K + AEK +G L L +++ E D P Y L +A + P
Sbjct: 257 --KQRDFAEKVAEKAEG---KLRAFLEKILAEIDA--PTAY-SLPALAKIHSLTLPPTDV 308
Query: 298 MMSAVQKEGYVASRSHIASNAIKTNCPMVACIRIAK 333
++ ++K GY ASR+H +KT+ ++I +
Sbjct: 309 VVEELKKLGYEASRTHYCGFCVKTDADRDVVVKILR 344
>sp|A3MTQ5|TRM1_PYRCJ tRNA (guanine(26)-N(2))-dimethyltransferase OS=Pyrobaculum
calidifontis (strain JCM 11548 / VA1) GN=trm1 PE=3 SV=1
Length = 358
Score = 109 bits (272), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 99/340 (29%), Positives = 153/340 (45%), Gaps = 50/340 (14%)
Query: 1 MCGCGIRSLRYLAEAKA-DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANR 59
+ G GIR +RY+ E+ ++ ND + VI NL SI D V + DAN
Sbjct: 63 LSGTGIRGIRYVIESGVVGKLILNDLSKEAVHVIQKNL-SINGVEAD-----VYNEDANV 116
Query: 60 VLSECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLA 119
+L + R D++D+D FGS + FL F A+K +G++ T+TD G P L
Sbjct: 117 LLHKL---RGQCDVVDVDPFGSPAPFLSAAFRALKNEGIVCATATDTAVLVGRYPRKCLR 173
Query: 120 SYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYSYHGPVFRVMLRVHRKAL 179
YG+ I P+ E+GLR L+G R A+++ + + PL SY+ H FR + + A
Sbjct: 174 RYGSVIRKSPFYLEMGLRNLVGYVARIAASEDFAIRPLLSYWEGH--YFRTCVYAVKSAK 231
Query: 180 PDN----RHYGFISYCNHCGNSQAYSWEELGQMSCPCSNTIGSSSLVVSGPLWTGPLHDA 235
+ R G++ Y + S SGP+W G L D
Sbjct: 232 DADDMLQRDVGYVEYRRY-------------------RKVTRRQSEYTSGPVWIGELGDP 272
Query: 236 THITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNSPSL 295
+ M +G +D KLL +E LP+ Y KL E A K SP+L
Sbjct: 273 SIAFFMAR---------EGQYSDFLKLLE---EEYSVSLPWFY-KLPEFAVDGK--SPTL 317
Query: 296 KTMMSAVQKEGYVASRSHIASNAIKTNCPMVACIRIAKEL 335
+ M+A+++ G A+R+H+AS+ K R+ + +
Sbjct: 318 EEAMAALRRAGVYAARTHMASDGFKAEATYGEVERVLRRV 357
>sp|A5UM08|TRM1_METS3 tRNA (guanine(26)-N(2))-dimethyltransferase OS=Methanobrevibacter
smithii (strain PS / ATCC 35061 / DSM 861) GN=trm1 PE=3
SV=1
Length = 388
Score = 106 bits (264), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 95/343 (27%), Positives = 149/343 (43%), Gaps = 34/343 (9%)
Query: 3 GCGIRSLRYLAEAK-ADFVMAND----GNDAHRR-VILGNLKSIERGSGDEKRWVVTHFD 56
G GIR +RY E V ND N+ R V L NLK IE D ++ H
Sbjct: 66 GSGIRGVRYKNEIDGVGHVFINDISETANEYERHNVELNNLKDIEIFQHDASMFLRMH-- 123
Query: 57 ANRVLSECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNN 116
R FD+IDID FG+ S FL + +R+ LL +T+TD + G
Sbjct: 124 -----------RGEFDVIDIDPFGTPSPFLDSAGYCSRRNSLLCVTATDTSALCGTYKEP 172
Query: 117 SLASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYSYHGPVFRVMLRVHR 176
+ Y A Y +E G+R+L G + + S+ + H R+ + V +
Sbjct: 173 CIRKYNAKPYKSEYCHETGIRILAGFVALTLAKYSKSIEVKLSHSTEH--YMRLYIEVKK 230
Query: 177 KALPDN---RHYGFISYCNHCGNSQAYSWEELG-QMSCPCSNTIGSSSLVVSGPLWTGPL 232
+ + ++ G++S+C HC Y E G S P L+ +GPLW G +
Sbjct: 231 GSKKSDECLKNIGYLSHCKHC----LYREENKGLATSTPDICPECGEKLIQAGPLWLGEI 286
Query: 233 HDATHITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNS 292
+ I+KM+ +E T D+ KLL E+ + P + + ++ K+++
Sbjct: 287 QNEEFISKMIVESENKKL---NTKEDVLKLLESCRIEA--KSPATFYDVHKICKILKISA 341
Query: 293 PSLKTMMSAVQKEGYVASRSHIASNAIKTNCPMVACIRIAKEL 335
P L + ++KEG+ A ++H IKTN P+ I K L
Sbjct: 342 PKLDLVFGNLEKEGFEAVKTHFNPLGIKTNAPLKKIKEIIKTL 384
>sp|B8GF12|TRM1_METPE tRNA (guanine(26)-N(2))-dimethyltransferase OS=Methanosphaerula
palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c)
GN=trm1 PE=3 SV=1
Length = 371
Score = 105 bits (262), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 97/332 (29%), Positives = 152/332 (45%), Gaps = 33/332 (9%)
Query: 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRV 60
M G+R LR E + V+ ND + A +I NL G+G E R VT DAN +
Sbjct: 60 MGASGVRGLRVAGECRIPVVI-NDRDPAAADLIRANLA----GAGLEGR--VTVEDANVL 112
Query: 61 LSECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLAS 120
LS RE FD +D+D FGS + F + KR L++T+TD G +
Sbjct: 113 LS-----RERFDAVDLDPFGSPAPFTDAACRSAKR--YLFVTATDTAPLCGAHLKAGIRR 165
Query: 121 YGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYSYHGPVFRVMLRVHRKALP 180
Y L Y E+GLR+L+G R +SPLF + S H R+ L+ + A
Sbjct: 166 YATKPLNTEYHAEVGLRILLGYVARTMVKYDRGLSPLFCFASAH--FLRLHLQAEKGADA 223
Query: 181 DNRHYGFISYCNHCGNSQAYSWEELGQMS----CPCSNTIGSSSLVVSGPLWTGPLHDAT 236
+R + + HC + + EE G + CP T +++ GPLW G L D
Sbjct: 224 ADRTVARLGFLYHCPSCPERT-EEPGVLPHDHVCPRCGT----TMLPIGPLWLGSLSDMA 278
Query: 237 HITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPF-GYIKLDEMASRAKMNSPSL 295
+ +M E+ + T E+ L +++D LP + +A + P++
Sbjct: 279 LLDQM---KERLPDLSLST----ERRLGKLLDVLKVELPTSSHYDYHRIAKWIGGSPPAI 331
Query: 296 KTMMSAVQKEGYVASRSHIASNAIKTNCPMVA 327
+++ + + GY ASR+H + A+KT+ P+ A
Sbjct: 332 DVVIARLIQTGYRASRAHYSGTALKTDAPLDA 363
>sp|Q2NI56|TRM1_METST tRNA (guanine(26)-N(2))-dimethyltransferase OS=Methanosphaera
stadtmanae (strain DSM 3091) GN=trm1 PE=3 SV=1
Length = 390
Score = 105 bits (262), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 87/334 (26%), Positives = 150/334 (44%), Gaps = 36/334 (10%)
Query: 3 GCGIRSLRYLAEAK-ADFVMANDGND-----AHRRVILGNLKSIERGSGDEKRWVVTHFD 56
G GIR RY E + V+ D N + + + L N+ ++E V D
Sbjct: 63 GTGIRGARYSKEIHGVEKVVVGDVNPLAVEISKKNMQLNNISNVE----------VQKND 112
Query: 57 ANRVLSECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNN 116
AN +L + FD++DID FG+ + F ++ ++ GL+ +++TD + G +
Sbjct: 113 ANILLQS---NKGLFDVVDIDPFGTPAMFTQSTAANIRPGGLICISATDTSALCGTYHDP 169
Query: 117 SLASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYSYHGPVFRVMLRVHR 176
L YGA L Y +E G+R+LI R + ++ LFS+ + H RV V R
Sbjct: 170 CLRKYGAKPLKTEYCHENGIRILIAFISRNLAVNQKYLHVLFSHSTEH--YMRVYAIVKR 227
Query: 177 KALPDNR---HYGFISYCNHCGNSQ-AYSWEELGQMSCP-CSNTIGSSSLVVSGPLWTGP 231
N+ + GFI++C +C + + Y + +CP C V+GPLW G
Sbjct: 228 GGKKTNKALDNIGFIAHCPNCLHRETTYGFAPKIPHTCPECGGEYD-----VAGPLWLGK 282
Query: 232 LHDATHITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMN 291
+ D I + L + DL L + E+D P + + ++ + K++
Sbjct: 283 IWDKEFIYNTMELVKNLNL---NKKDDLMSLFEKCYMEADG--PVTFYDIHKICKKLKIS 337
Query: 292 SPSLKTMMSAVQKEGYVASRSHIASNAIKTNCPM 325
SP + +M ++ GY SR+H ++T+ P+
Sbjct: 338 SPKINDVMDEIRNRGYFISRTHFKLTGMRTDMPL 371
>sp|A2SRK9|TRM1_METLZ tRNA (guanine(26)-N(2))-dimethyltransferase OS=Methanocorpusculum
labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=trm1
PE=3 SV=1
Length = 379
Score = 104 bits (260), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 97/334 (29%), Positives = 150/334 (44%), Gaps = 40/334 (11%)
Query: 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRV 60
M G+R LR EAK V ND ++ ++I N E+ GD VT DANR+
Sbjct: 60 MAATGVRGLRIANEAKIP-VTINDRDEQAVKIIKYN---AEKLGGD---ISVTCDDANRL 112
Query: 61 LSECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLAS 120
+ C + FD ID+D FG+ FL A K L++T+TD G
Sbjct: 113 M--CTSR---FDSIDLDPFGTPVPFLDAASRAAKH--YLFVTATDTAPLCGAHFKAGCRR 165
Query: 121 YGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYSYHGPVFRVMLRVHRKALP 180
Y A Y E+GLRM++G RE + P+ SY H FR +RV K
Sbjct: 166 YFATPRNTEYHAEVGLRMMMGTMARELVKYDRGMKPILSYAKSH--YFRSHVRVLGKVTA 223
Query: 181 DNR---HYGFISYCNHCGNSQAYSWEELGQMS-----CPCSNTIGSSSLVVSGPLWTGPL 232
+ GF+ C C Y E+ G + CP G ++ V GPLW GPL
Sbjct: 224 ADETLAQIGFVMQCPKC----LYREEQKGSLYPKMHICP---HCGVETVPV-GPLWMGPL 275
Query: 233 HDATHITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASR-AKMN 291
+ + +M + + GT +EK+L+ ++ E + + Y + SR K++
Sbjct: 276 QEKEILAEMQTALAELQF---GTKRQMEKMLTFLLAEPETCTYYDY----HIISRNMKVS 328
Query: 292 SPSLKTMMSAVQKEGYVASRSHIASNAIKTNCPM 325
P+++ +++++ + GY +R+H IKT P+
Sbjct: 329 PPNMEELIASLNEAGYYTTRTHFCDTGIKTTAPL 362
>sp|Q2FN43|TRM1_METHJ tRNA (guanine(26)-N(2))-dimethyltransferase OS=Methanospirillum
hungatei (strain JF-1 / DSM 864) GN=trm1 PE=3 SV=1
Length = 370
Score = 104 bits (260), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 94/330 (28%), Positives = 151/330 (45%), Gaps = 33/330 (10%)
Query: 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRV 60
M GIR R E V ND + +I N++S+ + +T DAN +
Sbjct: 60 MAASGIRGCRVGYETGVP-VTFNDRDQLAIDLITHNVQSLGIKAD------ITCRDANSL 112
Query: 61 LSECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDG-LLYLTSTDGYSSGGHRPNNSLA 119
+S+ E F +D+D FG+ + F+ A++ G L +T+TD G +
Sbjct: 113 MSD-----EKFGFVDLDPFGTPAPFIDA---AIRSSGKYLGVTATDTAPLCGAHLKAGIR 164
Query: 120 SYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYSYHGPVFRVMLRVHRKAL 179
Y A L Y E+GLR+L+G R A+ ++PLF Y H R+ L++ A
Sbjct: 165 RYMARPLNTEYHTEVGLRILLGNVARHAAVYDKGITPLFCYAHEH--FVRLHLQLKSSAS 222
Query: 180 PDNRHYGFISYCNHCGNSQAYSWEEL----GQMSCPCSNTIGSSSLVVSGPLWTGPLHDA 235
++ + Y + C Y EE G +CP + +SL +GPLWTG HD
Sbjct: 223 AADKSIARLGYIHQCPKC-PYRLEEQKFFPGIHTCP----LCGASLTPTGPLWTGSTHDP 277
Query: 236 THITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNSPSL 295
+ M+ AE + GD +G L KLL+ DE D + Y KL + +++ +
Sbjct: 278 NILAGMIEDAETF-IAGDPSG--LLKLLALCRDEPDISFSYDYHKLGKF---YRLSPGPI 331
Query: 296 KTMMSAVQKEGYVASRSHIASNAIKTNCPM 325
+++ ++ +GY A R H + IKT+ P+
Sbjct: 332 DVLLNRLRDKGYRAGRVHYSGYGIKTDAPL 361
>sp|A3CW75|TRM1_METMJ tRNA (guanine(26)-N(2))-dimethyltransferase OS=Methanoculleus
marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=trm1
PE=3 SV=1
Length = 371
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 99/326 (30%), Positives = 149/326 (45%), Gaps = 25/326 (7%)
Query: 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRV 60
M G+R LR E V ND N + N++++ G E VTH DAN +
Sbjct: 60 MGASGVRGLRVAHEVGIP-VTINDWNAKAVDLARQNVEAL--GLVAE----VTHGDANVL 112
Query: 61 LSECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDG-LLYLTSTDGYSSGGHRPNNSLA 119
+S FD +D+D FG+ + F V +A + G L++T+TD G +
Sbjct: 113 MSG-----RTFDAVDLDPFGTPAPF---VDSAARSAGNYLFVTATDTAPLCGAHLKAGMR 164
Query: 120 SYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYSYHGPVFRVMLRVHRKAL 179
Y + Y E+GLR L+G VRE V PLF Y H R+ LR+ A
Sbjct: 165 RYFSRPRNTEYHAEVGLRTLMGFVVREVIKYDRGVEPLFCYAHEH--FHRLHLRLRYGAA 222
Query: 180 PDNRHYGFISYCNHCGNSQAYSWEELGQMSCPCSNTIGSSSLVVSGPLWTGPLHDATHIT 239
+R I Y C N Y E+ G + P + S++LV GPLWTG ++D +
Sbjct: 223 AADRALARIGYVMQCPNC-LYRSEQTGMLPEPEECPLCSAALVPVGPLWTGGINDDATLA 281
Query: 240 KMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNSPSLKTMM 299
M E V GTG + +LL+ E D + Y +A R +++ ++T++
Sbjct: 282 AM---QEALPSVTAGTGARIGRLLATCRQELDTSSHYDY---HVIAKRLRVSPGRIETVI 335
Query: 300 SAVQKEGYVASRSHIASNAIKTNCPM 325
+ GY ASR+H + A+KT+ P+
Sbjct: 336 ERLVALGYRASRAHYSGTALKTDAPL 361
>sp|Q4J947|TRM1_SULAC tRNA (guanine(26)-N(2))-dimethyltransferase OS=Sulfolobus
acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 /
NBRC 15157 / NCIMB 11770) GN=trm1 PE=3 SV=1
Length = 382
Score = 102 bits (254), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 89/325 (27%), Positives = 154/325 (47%), Gaps = 29/325 (8%)
Query: 1 MCGCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANR 59
+ G+R +RY E + ++ ND + +I N+K + E R + + + N
Sbjct: 63 LSATGVRGIRYGLEINGVEEIILNDIDSDAVELIKKNVKI----NDLESRAKIYNNNINS 118
Query: 60 VLSECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLA 119
+L E + D +DID FGS + FL + F+A K + +T+TD + ++
Sbjct: 119 LLHEIKV-----DYVDIDPFGSPAPFLLSSFSAAKSKQYVAITATDLAALMCSSKTSARR 173
Query: 120 SYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYSYHGPVFRVMLRVHRKAL 179
YG M +S E+GLR LI A+ EA+ V+P+FS+Y+ + +RV+ +V R A
Sbjct: 174 KYGLICNKMSFSRELGLRGLISKAITEAAVVEKAVTPVFSFYNDY--YYRVIFKVERGAK 231
Query: 180 PDNRHYGFISY---CNHCGNSQAYSWEELGQMSCPCSNTIGSSSLVVSGPLWTGPLHDAT 236
+R + Y C CG E L QM C N + + GP + L D
Sbjct: 232 KVDRQLSKLVYYYECPKCG--YRIESEYLQQMKCTNCNLVMQT----YGPAYKESLVDYE 285
Query: 237 HITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNSPSLK 296
+ M++ +K+ + T + L+ +L + DES + Y ++D +AS A++N P
Sbjct: 286 FLNNMISELDKFSYF--QTFSKLKSILLTIKDES--KYSENYYRIDFLASLARVNVPRRD 341
Query: 297 TMMSAVQKEGYVASRSHIASNAIKT 321
+++ + ASR+H+ +KT
Sbjct: 342 NVINCLVD----ASRTHLDPLGVKT 362
>sp|A4YHH9|TRM1_METS5 tRNA (guanine(26)-N(2))-dimethyltransferase OS=Metallosphaera
sedula (strain ATCC 51363 / DSM 5348) GN=trm1 PE=3 SV=1
Length = 382
Score = 101 bits (252), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 88/326 (26%), Positives = 153/326 (46%), Gaps = 34/326 (10%)
Query: 1 MCGCGIRSLRYLAEAKAD-FVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANR 59
M G+R +RY+ E+ V+ ND N +I NL+ + +G V DAN
Sbjct: 63 MSATGVRGIRYVKESGVKGEVLFNDKNPVSVELISKNLE-LNGITGK-----VLRSDANS 116
Query: 60 VLSECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLA 119
++ + + D+D FGS + +L + ++++R G+L +T+TD + G +S
Sbjct: 117 LMHQVKV-----GYTDLDPFGSPAPYLFSAISSLRRKGVLGVTATDLSALEGKSRTSSKR 171
Query: 120 SYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYSYHGPVFRVMLRVHRKAL 179
YG + YS E GLR+L+G V+EAS Q + PL + YH +R+ +++ A
Sbjct: 172 KYGVQGSRLSYSKEAGLRVLLGKIVKEASVQEKGIRPLMGF--YHDYYYRLFVKMEDGAK 229
Query: 180 PDNR---HYGFISYCNHCGNSQAYSWEELGQMSCPCSNTIGSSSLVVSGPLWTGPLHDAT 236
+R G + C+ CG S S E + CP + L GP W G +D
Sbjct: 230 RADRSLESLGTLYECDRCGYSFMSSDE--CERKCP----VCGGELKYYGPAWIGEFNDLE 283
Query: 237 HITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFG-YIKLDEMASRAKMNSPSL 295
+ +M N ++ ++ + + +LL + E+ FG Y ++D +ASR K+N P +
Sbjct: 284 FLKEMKNRLTEFSYLSN--SVKISELLEYLERENR----FGPYYRVDVLASRLKVNMPPM 337
Query: 296 KTMMSAVQKEGYVASRSHIASNAIKT 321
+++ + A R+H K+
Sbjct: 338 NSLLGCLGD----AVRTHFDPRGFKS 359
>sp|A1RV26|TRM1_PYRIL tRNA (guanine(26)-N(2))-dimethyltransferase OS=Pyrobaculum
islandicum (strain DSM 4184 / JCM 9189) GN=trm1 PE=3
SV=1
Length = 352
Score = 101 bits (251), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 94/332 (28%), Positives = 148/332 (44%), Gaps = 42/332 (12%)
Query: 1 MCGCGIRSLRYLAEAKA-DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANR 59
+ G GIR +RY E+ A ++ ND + +I NL+ +G E V + DAN
Sbjct: 59 LSGTGIRGIRYAIESNAVGRLILNDISKEAVELIKKNLEL----NGVEGE--VYNEDANV 112
Query: 60 VLSECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLA 119
+L + R D++DID FGS + FL F A++ +GL+ +T+TD G P
Sbjct: 113 LLHKL---RNTCDVVDIDPFGSPAPFLHAAFRALRDEGLICVTATDTAVLVGRYPRKCFR 169
Query: 120 SYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYSYHGPVFRVMLRVHRKAL 179
Y + I P+ E+GLR L+G R A+++ + + P+FSY+ H FR R A
Sbjct: 170 RYNSVIRRTPFYIELGLRNLVGYVARVAASEDFSIQPVFSYWENH--YFRTCALATRGA- 226
Query: 180 PDNRHYGFISYCNHCGNSQAYSWEELGQMSCPCSNTIGSSSLVVSGPLWTGPLHDATHIT 239
+ N+ Y W + T+ S SGPLW GPL D +
Sbjct: 227 ---------READDSLNNLGYIW--YLKKRRKIVQTLDEHS---SGPLWIGPLGDPLVVH 272
Query: 240 KMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNSPSLKTMM 299
KM ++G L + E + P+ Y +L E A K SP+L+ +
Sbjct: 273 KM----SQYGVYS--------VFLQTLEMEYSIQAPW-YFRLPEFAVDGK--SPTLEKTL 317
Query: 300 SAVQKEGYVASRSHIASNAIKTNCPMVACIRI 331
+++ G A+R+H++ + K RI
Sbjct: 318 ELLRRGGIYATRTHMSYDGFKAEANYDEIARI 349
>sp|Q8SR99|TRM1_ENCCU tRNA (guanine(26)-N(2))-dimethyltransferase OS=Encephalitozoon
cuniculi (strain GB-M1) GN=TRM1 PE=1 SV=1
Length = 432
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 94/339 (27%), Positives = 152/339 (44%), Gaps = 30/339 (8%)
Query: 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGN--LKSIER----GSGDEKRWVVTH 54
M G+R +RYL E V ND + + I N L IE GS + +
Sbjct: 57 MSATGLRGIRYLKEIGNSIVYLNDISQSSVDTIRSNVLLNGIEDAEYFGSDLQGIKESGN 116
Query: 55 FDANRVLSECYLKRE----FFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTD-GYSS 109
AN V S+C + FFD+IDID FGS S ++ + A++ G+L LT+TD G
Sbjct: 117 ARANVVKSDCNVLMTSLPCFFDVIDIDPFGSCSEYIDSALRAIRHKGILCLTATDKGVLC 176
Query: 110 GGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSY-YSYHGPVF 168
R L Y I+ NE+ LR ++ R+AS V P+ S ++ +F
Sbjct: 177 SNER--KCLIKYSTSIMKGMGMNEVPLRTIVSLVSRQASKFDCSVEPVMSLSIDFYVRIF 234
Query: 169 RVMLRVHRKALPDNRHYGFISYCNHCGNSQAYSWEELGQMSCPCSNTIGSSSLVVSGPLW 228
++R + +++ + + + C++ ++ E + CSN S + + GP W
Sbjct: 235 LRIVRRNPRSVVERNSHVLMCVCHNLAEIRSGQRE----IDSRCSNC--SRRMRLCGPFW 288
Query: 229 TGPLHDATHITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRA 288
GPLHD I +L G + G L L R +++ P + Y ++ + S
Sbjct: 289 NGPLHDVKVIQGVL------GGMNGGNKRLLGIL--RYLEQEIPTM--FYYEIPRLCSLL 338
Query: 289 KMNSPSLKTMMSAVQKEGYVASRSHIASNAIKTNCPMVA 327
+++ +M A+ GY S +H NAIKTN P+ +
Sbjct: 339 GISTIKQSRLMHALANMGYQVSYTHSELNAIKTNAPIAS 377
>sp|Q12Y46|TRM1_METBU tRNA (guanine(26)-N(2))-dimethyltransferase OS=Methanococcoides
burtonii (strain DSM 6242) GN=trm1 PE=3 SV=2
Length = 386
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 91/327 (27%), Positives = 161/327 (49%), Gaps = 30/327 (9%)
Query: 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRV 60
M GIR LR E ++ ND +D +IL N+ +G T +AN +
Sbjct: 72 MSASGIRGLRIANEVGITSIL-NDWSDDAYGLILENIGL----TGVSDIAEATCKNANVL 126
Query: 61 LSECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYL--TSTDGYSSGGHRPNNSL 118
+ E +R F+++D+D FGS + +L +A R + +L T+TD G N+ +
Sbjct: 127 MHE---RR--FNIVDLDPFGSPTPYL----DAATRSAVHFLEVTATDTAPLCGAHFNSGM 177
Query: 119 ASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYSYHGPVFRVMLRVHRKA 178
Y A L + +E+G+R+L+G RE + ++PL S+ + H R L+V + A
Sbjct: 178 RKYAAVPLNNEFHSEMGVRILLGKIARELAKHDKGMTPLLSHATRH--YVRTYLQVKKGA 235
Query: 179 -LPDN--RHYGFISYCNHCGNSQAYSWEELGQMSCPCSNTIGSSSLVVSGPLWTGPLHDA 235
L D + GF+S+C HCG+ + + + +S CS+ + + ++GPLW G LH+
Sbjct: 236 KLADKAFKDLGFLSHCEHCGHREIFHGMAI-SISDHCSSC--GNDVYIAGPLWLGQLHEP 292
Query: 236 THITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNSPSL 295
+ ++L E GT +KL+ DE D +PF Y + + +++P++
Sbjct: 293 QYCDEVLLELEDRSL---GTKEQAKKLILACRDELD--IPFFYDQ-HVICKMIGVSAPAM 346
Query: 296 KTMMSAVQKEGYVASRSHIASNAIKTN 322
++A+++ G SR+H + KT+
Sbjct: 347 DMFIAALRETGANVSRTHFTGISFKTD 373
>sp|Q8PU28|TRM1_METMA tRNA (guanine(26)-N(2))-dimethyltransferase OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=trm1 PE=3 SV=1
Length = 388
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 88/338 (26%), Positives = 152/338 (44%), Gaps = 30/338 (8%)
Query: 5 GIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSEC 64
GIR LR E M ND + +I N+K +G E++ T +AN +L E
Sbjct: 76 GIRGLRIAGEVGIHSTM-NDWSHEAFELIKENIKI----NGLEEKAQATRRNANVLLHE- 129
Query: 65 YLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYGAY 124
+ F ++D+D FG+ S +L ++ +L +T+TD G N+ + Y +
Sbjct: 130 ----QRFHIVDVDPFGTPSPYLDAAASSAY--SMLSVTATDTAPLCGAHLNSGIRKYASV 183
Query: 125 ILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYSYHGPVFRVMLRV---HRKALPD 181
L Y +E+GLR+L+G RE + + PL S+ + H R L V RKA
Sbjct: 184 PLNTEYHSEMGLRVLLGACARELAKHEKGMLPLLSHVTRH--YVRTYLEVLPGSRKADKT 241
Query: 182 NRHYGFISYCNHCG-NSQAYSWEELGQMSCPCSNTIGSSSLVVSGPLWTGPLHDATHITK 240
+ GF+++C CG Y + CP + ++GPLW GP + +
Sbjct: 242 LKSMGFVAHCPRCGFRKPVYGLAVHIEKECPECGGLTK----IAGPLWLGPYREPEFCNE 297
Query: 241 MLNLAEKWGWVGDGTGTDLEKLLSRMIDESD-PRLPFGYIKLDEMASRAKMNSPSLKTMM 299
+++ E T + K+++ DE D P ++ E+ + A +++++
Sbjct: 298 VISELEAHPL---NTKEKVRKIITFCRDELDIPMFYDQHVICKELGASAT----GIESLI 350
Query: 300 SAVQKEGYVASRSHIASNAIKTNCPMVACIRIAKELQG 337
A++ G+ ASR+H + KT+ P+ +I L G
Sbjct: 351 EALRAGGFEASRTHFTGTSFKTDAPIAEIKKIILALSG 388
>sp|Q971V9|TRM1_SULTO tRNA (guanine(26)-N(2))-dimethyltransferase OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=trm1
PE=3 SV=1
Length = 374
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 92/342 (26%), Positives = 150/342 (43%), Gaps = 42/342 (12%)
Query: 1 MCGCGIRSLRYLAEAKA-DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWV---VTHFD 56
+ G+R +RY E + ++ ND N +I N EK +V +T D
Sbjct: 63 LSASGVRGIRYYTEIGGIEKLILNDKNPIATELIKKNA---------EKNYVNARITTKD 113
Query: 57 ANRVLSECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNN 116
AN +L E D +DID FGS + F+ + NA G + T+TD + +
Sbjct: 114 ANSLLYEIKA-----DFVDIDPFGSPAPFILSAINATINKGYVAFTATDLSALECSSKFS 168
Query: 117 SLASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFS-YYSYHGPVFRVMLRVH 175
+ Y + +S E+G+R LI +RE + P+FS Y+ Y+ +RV R+
Sbjct: 169 ARRKYDLICERLSFSKELGIRGLIAKVIREGAIIEKAAYPIFSFYFDYY---YRVFFRIE 225
Query: 176 RKALPDNR---HYGFISYCNHCGNSQAYSWEELGQMSCPCSNTIGSSSLVVSGPLWTGPL 232
A ++ G+ C+ CG + + E + CP + GP WTG L
Sbjct: 226 NGAKKVDKLLEKQGYYYECSKCGYREVDYYAE--RKICPRCGI----EMRRYGPAWTGEL 279
Query: 233 HDATHITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNS 292
+ + M + + + T + KLL+ +++ES P Y +LD +AS K N
Sbjct: 280 WNREFLLSMKENLKNFTYF--DTFMQVNKLLNILVEESKYVSP--YFRLDFIASLIKRNI 335
Query: 293 PSLKTMMSAVQKEGYVASRSHIASNAIKTNC---PMVACIRI 331
P + M+ +++ AS +H IKTN +V CI+I
Sbjct: 336 PKREKMLECLKE----ASITHFDYRGIKTNKEIDEIVNCIKI 373
>sp|Q97AR2|TRM1_THEVO tRNA (guanine(26)-N(2))-dimethyltransferase OS=Thermoplasma
volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 /
NBRC 15438 / GSS1) GN=trm1 PE=3 SV=1
Length = 342
Score = 95.9 bits (237), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 88/334 (26%), Positives = 147/334 (44%), Gaps = 55/334 (16%)
Query: 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLS 62
G G+R +R E KA V+A + + + +I N+ +I D + +F
Sbjct: 56 GSGVRGIRISLETKAKVVIA-EISPSSCEIIKQNI-AINNAEAD---LIHDNF------- 103
Query: 63 ECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYG 122
+C FD ID+D +GS +L V++ G L +T+TD + G N + YG
Sbjct: 104 QCVSSHIAFDYIDVDPYGSPVPYLDAAIMNVRKGGYLGITATDQSTLTGSTLNKTRRRYG 163
Query: 123 AYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYSYHGPVFRVMLRVHRKALPDN 182
AYI+ Y +E+G+R LIG R A+A ++ P S +++H +RV ++V + +
Sbjct: 164 AYIVNDIYRHEMGIRTLIGYIARRAAAFDRYIEPQLSIWNHH--YYRVFVKVGKGVNGAD 221
Query: 183 RHYGFISYCNHCGNSQAYSWEELGQMSCPCSNTIGSS-SLVVSGPLWTGPLHDATHITKM 241
+ I Y N TI +S V GP+W L++A + K+
Sbjct: 222 KMIENIGYLNK-------------------HTTIDNSFKDVNEGPVWLSNLNNAELLEKI 262
Query: 242 LNLAEKWGWVGDGTGTDLEKLLSRMID--ESDPRLPFGYIKLDEMASRAKMNSPSLKTMM 299
+ +S+ I+ + D RL F + L ++A + ++ P L +M
Sbjct: 263 -----------------RDPRVSKKIEMIKHDNRLLF--VDLTDIARKTSLSLPPLAKVM 303
Query: 300 SAVQKEGYVASRSHIASNAIKTNCPMVACIRIAK 333
+ K GY A R+ + IKT+CP I K
Sbjct: 304 DEIMKHGYEAHRTSFSPTGIKTDCPYAEVSEILK 337
>sp|Q23270|TRM1_CAEEL tRNA (guanine(26)-N(2))-dimethyltransferase OS=Caenorhabditis
elegans GN=trm-1 PE=1 SV=1
Length = 526
Score = 95.5 bits (236), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 95/356 (26%), Positives = 155/356 (43%), Gaps = 50/356 (14%)
Query: 1 MCGCGIRSLRYLAEA-KADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHF-DAN 58
+ G+R+LR+ E F+MAND +D I N+K G D V HF DA
Sbjct: 98 LSASGLRALRFSKEVPNVGFIMANDFSDNAVASIQENVKL--NGVED---IVEAHFGDAV 152
Query: 59 RVLSECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSL 118
+ E + F +D+D +G+ S+FL + V G+L +T TD G+ P
Sbjct: 153 MTMMEHRGIDKRFHAVDLDPYGTASTFLDSAVQCVADRGILMVTCTDMAVLCGNTPEACY 212
Query: 119 ASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFS----YYSYHGPVFRVMLRV 174
Y A M +E+GLR+L+ A+ ++ PL S +Y RV +RV
Sbjct: 213 NKYDAVTTRMKCCHEVGLRILLRAIDSAANRYTRYIEPLVSISVDFY------VRVFVRV 266
Query: 175 HRKALPDNR---HYGFISYCNHCGNSQAYSWEELGQMSCPCSNTIGSSSLVVS------- 224
H A + G + C+ C + + + G+ + +I + +S
Sbjct: 267 HTGAFQAKQSGTKVGTVLVCSGCHSMEPLVLLKRGEGNQQSKYSIPTVRHSISGPGNRCI 326
Query: 225 ---------GPLWTGPLHDATHITKMLNL------AEKWGWVGDGTGTDLEKLLSRMIDE 269
GP++ P+H +T +L AE+ G G L+ +L+ + +E
Sbjct: 327 HCLLPLHQIGPIYLAPIHSKPFVTSLLERLKSTPEAERLGTHG-----RLQGVLTMVNEE 381
Query: 270 SDPRLPFGYIKLDEMASRAKMNSPSLKTMMSAVQKEGYVASRSHIASNAIKTNCPM 325
D L Y + ++MA+ K++ P +++ SA+ G+ S SH AIKTN PM
Sbjct: 382 LDDVL---YYEHNQMANVVKVSVPKSQSVRSAILNAGFKVSGSHCNPRAIKTNAPM 434
>sp|Q3TX08|TRM1_MOUSE tRNA (guanine(26)-N(2))-dimethyltransferase OS=Mus musculus
GN=Trmt1 PE=1 SV=2
Length = 663
Score = 95.1 bits (235), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 93/356 (26%), Positives = 148/356 (41%), Gaps = 50/356 (14%)
Query: 1 MCGCGIRSLRYLAEAKA-DFVMANDGND-----AHRRVILGNLKS-IERGSGDEKRWVVT 53
+ G+RS+R+ E V+AND + HR V L + ++ D + +
Sbjct: 159 LAASGLRSIRFALEVPGLQSVVANDASARAVELMHRNVELNGVAHLVQPNQADARMLMYQ 218
Query: 54 HFDANRVLSECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHR 113
H A E FD+ID+D +GS + FL AV GLL +T TD G+
Sbjct: 219 HQKAP----------ERFDVIDLDPYGSPAPFLDAAVQAVSDGGLLCVTCTDMAVLAGNS 268
Query: 114 PNNSLASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYSYHGPVFRVMLR 173
+ YGA L +E+ LR+++ A+ ++ PL S + RV +R
Sbjct: 269 GETCYSKYGAMALKSRACHEMALRIVLHSLDLHANCYQRYIVPLLSISADF--YIRVFVR 326
Query: 174 V---HRKALPDNRHYGFISYCNHCGNSQAYSWEELGQMSCPCSNTIGSSSLV-------- 222
V K + C CG A+ + LG+ S I S+
Sbjct: 327 VFTGQAKVKSSASKQALVFQCVGCG---AFYLQRLGKASGDPGGRIKFSAACGPPVTPEC 383
Query: 223 --------VSGPLWTGPLHDATHITKMLNLAEKWGWVGDG---TGTDLEKLLSRMIDESD 271
+ GP+W P+HD + ++L+ G T ++ +LS ++ E
Sbjct: 384 EHCGQRHQLGGPMWAEPIHDLDFVGRVLDAVT----TNPGRFHTSMRIQGVLS-VVTEEL 438
Query: 272 PRLPFGYIKLDEMASRAKMNSPSLKTMMSAVQKEGYVASRSHIASNAIKTNCPMVA 327
P +P Y LD+++S N+P L + SA+ G+ S SH NA+KT+ P A
Sbjct: 439 PDVPL-YYTLDQLSSTIHCNTPRLLQLRSALLHAGFRVSLSHACKNAVKTDAPPEA 493
>sp|B1YCV9|TRM1_PYRNV tRNA (guanine(26)-N(2))-dimethyltransferase OS=Pyrobaculum
neutrophilum (strain DSM 2338 / JCM 9278 / V24Sta)
GN=trm1 PE=3 SV=1
Length = 351
Score = 94.7 bits (234), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 88/328 (26%), Positives = 146/328 (44%), Gaps = 50/328 (15%)
Query: 1 MCGCGIRSLRYLAEAKA--DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDAN 58
+ G G+R +RY E+KA V+ + DA + K++E D + V + DAN
Sbjct: 59 LSGTGVRGIRYAVESKAVARLVLNDISRDAAELI----KKNLELNGVDGE---VYNDDAN 111
Query: 59 RVLSECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSL 118
+L + D++DID FGS + ++ F A++ +GLL T+TD G P L
Sbjct: 112 VLLHRL---KNVCDVVDIDPFGSPAPYIHAAFRALRDEGLLCATATDTAVLVGRYPRKCL 168
Query: 119 ASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYSYHGPVFRVMLRVHRKA 178
Y + + P+ E+GLR L+G R A+++ + + PL SY+ H FR + V R A
Sbjct: 169 RRYWSTVRKTPFYIELGLRNLVGFIARVAASEDFSIRPLMSYWEGH--YFRTCVAVARGA 226
Query: 179 LPDN---RHYGFISYCNHCGNSQAYSWEELGQMSCPCSNTIGSSSLVVSGPLWTGPLHDA 235
+ ++ G++ Y + Q+ S SGPLW GPL D
Sbjct: 227 RDADDALQNVGYVVYRR--------GMRQTTQLPDESS----------SGPLWLGPLGDP 268
Query: 236 THITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNSPSL 295
+ +M G +D +L + E P+ Y +L E A SP+L
Sbjct: 269 LIMHQMAQ---------HGVYSDFLGVLEQ---EYSIEAPWHY-RLPEFAVEGV--SPTL 313
Query: 296 KTMMSAVQKEGYVASRSHIASNAIKTNC 323
+ +++ G A+ +H+A + K +
Sbjct: 314 AEALDLLRRSGIYATATHMAKDGFKADA 341
>sp|Q9NXH9|TRM1_HUMAN tRNA (guanine(26)-N(2))-dimethyltransferase OS=Homo sapiens
GN=TRMT1 PE=1 SV=1
Length = 659
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 93/351 (26%), Positives = 152/351 (43%), Gaps = 40/351 (11%)
Query: 1 MCGCGIRSLRYLAEAKA-DFVMANDGND-----AHRRVILGNLKSIERGSGDEKRWVVTH 54
+ G+RS+R+ E V+AND + R V L ++ + + S + R ++
Sbjct: 160 LAASGLRSIRFALEVPGLRSVVANDASTRAVDLIRRNVQLNDVAHLVQPSQADARMLM-- 217
Query: 55 FDANRVLSECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRP 114
+ RV E FD+ID+D +GS ++FL AV GLL +T TD G+
Sbjct: 218 YQHQRV-------SERFDVIDLDPYGSPATFLDAAVQAVSEGGLLCVTCTDMAVLAGNSG 270
Query: 115 NNSLASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYS-YHGPVFRVMLR 173
+ YGA L +E+ LR+++ A+ V PL S + ++ VF +
Sbjct: 271 ETCYSKYGAMALKSRACHEMALRIVLHSLDLRANCYQRFVVPLLSISADFYVRVFVRVFT 330
Query: 174 VHRKALPDNRHYGFISYCNHCGNSQAYSWEELGQMS-CPCSNTIGSSSL----------- 221
K + C CG A+ + LG+ S P S++
Sbjct: 331 GQAKVKASASKQALVFQCVGCG---AFHLQRLGKASGVPSGRAKFSAACGPPVTPECEHC 387
Query: 222 ----VVSGPLWTGPLHDATHITKMLN-LAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPF 276
+ GP+W P+HD + ++L ++ G T + +LS +I E P +P
Sbjct: 388 GQRHQLGGPMWAEPIHDLDFVGRVLEAVSANPGRF--HTSERIRGVLS-VITEELPDVPL 444
Query: 277 GYIKLDEMASRAKMNSPSLKTMMSAVQKEGYVASRSHIASNAIKTNCPMVA 327
Y LD+++S N+PSL + SA+ + S SH NA+KT+ P A
Sbjct: 445 -YYTLDQLSSTIHCNTPSLLQLRSALLHADFRVSLSHACKNAVKTDAPASA 494
>sp|Q466T6|TRM1_METBF tRNA (guanine(26)-N(2))-dimethyltransferase OS=Methanosarcina
barkeri (strain Fusaro / DSM 804) GN=trm1 PE=3 SV=1
Length = 388
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 84/340 (24%), Positives = 147/340 (43%), Gaps = 38/340 (11%)
Query: 5 GIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSEC 64
GIR LR E M ND + +I N K +G E+ + T AN +L E
Sbjct: 76 GIRGLRIAGEVGIHATM-NDWSPEAFELIKENSKI----NGLEENTLATRKSANVLLHE- 129
Query: 65 YLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYGAY 124
+ + ++DID FG+ + FL +V+ G+L +T+TD G + Y +
Sbjct: 130 ----QKYHIVDIDPFGTPAPFLDAASASVR--GMLSVTATDTAPLCGAHLKAGIRKYASV 183
Query: 125 ILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYSYHGPVFRVMLRVHRKALPDNRH 184
L Y +E+GLR+L+G RE + + PL S+ + H +R + + LP +
Sbjct: 184 PLNTEYHSEMGLRVLLGACARELAKHEKGMLPLLSHVTRH------YVRTYLEVLPGTKQ 237
Query: 185 -------YGFISYCNHCG-NSQAYSWEELGQMSCPCSNTIGSSSLVVSGPLWTGPLHDAT 236
GF +C CG Y + CP + ++GPLW GP +
Sbjct: 238 TDRTLKSMGFSIHCPKCGFRGPVYGLAVHIEKECPVCGSFTQ----IAGPLWLGPFREQA 293
Query: 237 HITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESD-PRLPFGYIKLDEMASRAKMNSPSL 295
++++ E T +K+++ DE D P ++ E+ + A +
Sbjct: 294 FCDEVISELEMHPL---NTKDKAKKIITFCRDELDIPMFYDQHVICKELGASAT----GI 346
Query: 296 KTMMSAVQKEGYVASRSHIASNAIKTNCPMVACIRIAKEL 335
+ ++ A++ G+ ASR+H + + +T+ P+ I + L
Sbjct: 347 EILIEALKAHGFEASRTHFSGTSFRTDAPITEIKEIIRAL 386
>sp|A7I9E9|TRM1_METB6 tRNA (guanine(26)-N(2))-dimethyltransferase OS=Methanoregula boonei
(strain 6A8) GN=trm1 PE=3 SV=1
Length = 374
Score = 92.8 bits (229), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 90/328 (27%), Positives = 137/328 (41%), Gaps = 29/328 (8%)
Query: 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRV 60
M G+R LR E V ND + +I N+ + VT DA +
Sbjct: 60 MGATGVRGLRVAHEVGIP-VTINDRDPEAIPLIRENVARLGLP------VTVTCRDACSL 112
Query: 61 LSECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLAS 120
L E + FD +DID FG+ + F +R L LT+TD G +
Sbjct: 113 LFE-----QAFDAVDIDPFGTPAPFTDAGIRGTRR--FLLLTATDTAPLCGAHLKAGIRR 165
Query: 121 YGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYSYHGPVFRVMLRVHRKALP 180
Y A Y E+GLR+L+G RE + PLF + H R+ LR+ R
Sbjct: 166 YFARPGNTGYHGEVGLRILLGFVARETVKYDRGIEPLFCFAREH--FVRLNLRLTRGPKA 223
Query: 181 DNR---HYGFISYCNHCGNSQAYSWEELGQMSCPCSNTIGSSSLVVSGPLWTGPLHDATH 237
+R GFI C C AY E G + L GPL+ G +
Sbjct: 224 ADRTIERLGFILQCPTC----AYREELPGMFPPAATCPFCGKPLRPIGPLFLGAISSDEI 279
Query: 238 ITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNSPSLKT 297
+ +M + G GT +LEKLL+ +E + Y + +A + ++ P ++T
Sbjct: 280 LGQM---QARLPSCGLGTQKELEKLLTTCREELPTSSHYDYHR---VAQQLVVSPPKIET 333
Query: 298 MMSAVQKEGYVASRSHIASNAIKTNCPM 325
++ A++ G+ ASR+H + +KTN P+
Sbjct: 334 LLEALRSAGFDASRTHYSGTGVKTNAPL 361
>sp|Q58356|TRM1_METJA tRNA (guanine(26)-N(2))-dimethyltransferase OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=trm1 PE=3 SV=1
Length = 374
Score = 92.0 bits (227), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 88/329 (26%), Positives = 147/329 (44%), Gaps = 32/329 (9%)
Query: 1 MCGCGIRSLRYLAEAKAD---FVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDA 57
+ G GIR LRY E + + V ND N I+ N K E + D V + DA
Sbjct: 60 LAGSGIRGLRYAKELEFNGELKVFLNDINPKAYEKIINNAKLNEIENID-----VFNEDA 114
Query: 58 NRVLSECYLKREFFDLIDIDSFGSDSSFLRTVFNA-VKRDGLLYLTSTDGYSSGGHRPNN 116
N LS+ + FF+++DID FGS + ++ A V R+GLL LT+TD + G +
Sbjct: 115 NTFLSKHF---RFFNVVDIDPFGSPAPYVEQAIRALVTRNGLLCLTATDTAALCGRSKKS 171
Query: 117 SLASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYSYHGPVFRVMLRVHR 176
L Y AY L +E LR+L+G +R A+ + P+F + + H RV L R
Sbjct: 172 CLRKYLAYPLFGRDCHEFALRVLVGYVMRMATKYELALKPVFCHATDH--YVRVYLVTDR 229
Query: 177 KALPDNRHYGFISYCNHCGNSQAYSWEELGQMSCPCSNTIGSSSLVVSGPLWTGPLHDAT 236
A ++ + + Y + E G +GPL+ G L+D
Sbjct: 230 GAKRADKVFEMLGYVKDVNGIKIIKKFEEGYEKG------------FAGPLYIGNLYDKA 277
Query: 237 HITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNSPSLK 296
+ + L +AEK + + K+L+ + ES G ++ K++ P ++
Sbjct: 278 LVEEALKIAEKREF-----SERVLKILNAIKGESAIN-QVGCYDTHQIGKMLKISVPPMQ 331
Query: 297 TMMSAVQKEGYVASRSHIASNAIKTNCPM 325
+++ +++ G+ A +H IKT+ +
Sbjct: 332 DIINKLKEMGFNAVVTHYNPKGIKTDATL 360
>sp|Q9VK89|TRM1_DROME Probable tRNA (guanine(26)-N(2))-dimethyltransferase OS=Drosophila
melanogaster GN=CG6388 PE=2 SV=1
Length = 578
Score = 91.7 bits (226), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 81/345 (23%), Positives = 145/345 (42%), Gaps = 29/345 (8%)
Query: 1 MCGCGIRSLRYLAE-AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANR 59
+ G+RS+RY E A ++AND + R + ++ + R + E+ +H DA
Sbjct: 107 LAATGLRSIRYAQEIAGVRQIVANDLS----RQAVASINTNIRHNKVEELIEPSHSDAMT 162
Query: 60 VLSECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLA 119
++ + FD +D+D +G + FL + GLL +T+TD G+ P
Sbjct: 163 LMYLSTQPEKRFDAVDLDPYGCPNRFLDGAMQCLVDGGLLLVTATDMAVLAGNAPEACYV 222
Query: 120 SYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYSYHGPVFRVMLRVHRKAL 179
YG+ L M +E+ LR+L+ A+ G ++ PL S + R+ +RV+
Sbjct: 223 KYGSVPLRMKCCHEMALRILLHCIESHANRYGKYIEPLLSISADF--YIRIFVRVYVGQA 280
Query: 180 PDNRHYGFISYCNHCGNSQAYSWEELG--------------QMSCPCSNTIGSSSL---- 221
S+ C + ++ + LG + P + S
Sbjct: 281 QCKLSMSKQSWIYQCTGCETFTLQPLGITKPNPTAGNPQQLKFGIPTGPAVNSQCEHCGH 340
Query: 222 --VVSGPLWTGPLHDATHITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYI 279
+ GP+W+ P+H+ + +L ++ GT + +LS M+ E +P Y
Sbjct: 341 RHHLGGPIWSAPIHNPEFVQDLLTAVQETTLQSLGTQRRIVGVLS-MVQEELQDVPLYYT 399
Query: 280 KLDEMASRAKMNSPSLKTMMSAVQKEGYVASRSHIASNAIKTNCP 324
D++ K+ + SA+ GY S SH + N++KTN P
Sbjct: 400 P-DKLCCVLKLEIVPMLKFRSAILHAGYRVSYSHASKNSLKTNAP 443
>sp|Q9LFU5|TRM1_ARATH Probable tRNA (guanine(26)-N(2))-dimethyltransferase 1
OS=Arabidopsis thaliana GN=At5g15810 PE=2 SV=3
Length = 593
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 93/357 (26%), Positives = 150/357 (42%), Gaps = 58/357 (16%)
Query: 1 MCGCGIRSLRYLAEAKA-DFVMANDGNDA-----HRRVILGNLKSIERGSGDEKRWVVTH 54
+ G+R+LRY E + V+A D + A R + L S + V +H
Sbjct: 128 LSASGLRALRYAREVEGIGQVVALDNDPASVEACQRNIKFNGLMSTSK--------VESH 179
Query: 55 FDANRVLSECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRP 114
RV + K FD++D+D +G+ S FL + +V GLL T+TD G
Sbjct: 180 LTDARVHMLSHPKD--FDVVDLDPYGAPSIFLDSAVQSVADGGLLMCTATDMAVLCGANG 237
Query: 115 NNSLASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFS----YYSYHGPVFRV 170
+ YG+Y L Y +E+ LR+L+ A+ ++ P+ S +Y RV
Sbjct: 238 EVCYSKYGSYPLKGKYCHEMALRILLASIESHANRYKRYIVPVLSVQMDFY------VRV 291
Query: 171 MLRVHRKALPDNRHYGFISYCNHCGNSQAYSWEELGQMSCPCSNTI----GSSSLV---- 222
+RV+ A +SY C ++ + +G+ S P +N++ G +V
Sbjct: 292 FVRVYTSASAMKNTPLKLSYVYQCIGCDSFHLQSVGR-SLPKNNSVRYLPGVGPVVPQDC 350
Query: 223 --------VSGPLWTGPLHDATHITKMLNLAEKWGWVGDGTGTDLEKLLSRM------ID 268
+ GP+W+ P+HD + +LN G + D R+ I
Sbjct: 351 THCGKKYNMGGPIWSAPIHDQEWVNSILN--------GVKSMKDRYPAYDRICAVLTTIS 402
Query: 269 ESDPRLPFGYIKLDEMASRAKMNSPSLKTMMSAVQKEGYVASRSHIASNAIKTNCPM 325
E P +P ++ L +++ K SPS SAV Y S SH+ IKT+ PM
Sbjct: 403 EELPDVPL-FLSLHSLSATLKCTSPSAALFRSAVINAKYRVSGSHVNPLGIKTDAPM 458
>sp|Q8TYY7|TRM1_METKA tRNA (guanine(26)-N(2))-dimethyltransferase OS=Methanopyrus
kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC
100938) GN=trm1 PE=3 SV=1
Length = 383
Score = 89.4 bits (220), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 82/321 (25%), Positives = 141/321 (43%), Gaps = 22/321 (6%)
Query: 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRV 60
+ G G R +R E + V+ ND N +I N+ R + E + + DAN +
Sbjct: 57 LAGVGARGIRIAVELSPEVVVLNDLNPRAVELIEENV----RLNDVEDVCRIENRDANAL 112
Query: 61 LSECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLAS 120
+ E L F D +DID FG FL V+ G++ +++TD + G P ++
Sbjct: 113 MHEDELAGRF-DYVDIDPFGPPVPFLDAAVRTVRNRGVVGISATDVSALAGRYPRSARRK 171
Query: 121 YGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYS-YHGPVFRVMLRVHRKAL 179
Y + + + E+ +R LI VR + P +++ +H V + R R+A
Sbjct: 172 YWVEVERVEFYQEVAIRALISYIVRTCAKYDLAFEPHIAFFQRHHVRVIGEIRRGARRAD 231
Query: 180 PDNRHYGFISYCNHCGNSQAYSWEELGQMSCPCSNTIGSSSLVVSGPLWTGPLHDATHIT 239
+ G++ +C CG Y+ E CP GS S+V GPLW D
Sbjct: 232 RALKRLGYLLHCRECG----YTSEREFDRECP---RCGSGSVVRLGPLWLPDFADRERAE 284
Query: 240 KMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNS-PSLKTM 298
+ + A + G + +LL + E+ P+ Y + ASR ++ PSL ++
Sbjct: 285 RAASDARELGL------EEAAELLETVAKETGTN-PWAY-DIHRWASRLGLSRVPSLTSV 336
Query: 299 MSAVQKEGYVASRSHIASNAI 319
+ +++EG+ A R H + A+
Sbjct: 337 LEGLREEGFNAVRPHYSKRAV 357
>sp|P57706|TRM1_THEAC tRNA (guanine(26)-N(2))-dimethyltransferase OS=Thermoplasma
acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 /
NBRC 15155 / AMRC-C165) GN=trm1 PE=3 SV=1
Length = 344
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 78/329 (23%), Positives = 143/329 (43%), Gaps = 53/329 (16%)
Query: 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLS 62
G GIR +R E + ++ D++R + ++ER +G + + F
Sbjct: 56 GTGIRGIRISKETDSAVTISEVSPDSYRLI----RDNVER-NGSQASVINDSF------- 103
Query: 63 ECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYG 122
EC L+ ++ +D+D +GS +L VKR+G L +T+TD + G P+ + Y
Sbjct: 104 ECVLQHGAYEYVDVDPYGSPVPYLDAALMGVKRNGFLGVTATDQSALTGSVPHKTRIRYD 163
Query: 123 AYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYSYHGPVFRVMLRVHRKALPDN 182
A I + +E+G+R+LIG + A++ G + PL S +HG +RV +RV +
Sbjct: 164 ALIKNDTFRHEMGIRLLIGYMAKRAASLGRFIDPLISI--WHGHYYRVFVRVRKGFEGAG 221
Query: 183 RHYGFISYCNHCGNSQAYSWEELGQMSCPCSNTIGSSSLVVSGPLWTGPLHDATHITKML 242
R + Y N N + ++++ + GP+W G L D +L
Sbjct: 222 RMMQNLGYVNKH-NLLSGIYQDMDE-----------------GPVWKGNLQDNAVAEAVL 263
Query: 243 NLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNSPSLKTMMSAV 302
A + + + RL F L ++A + P +++++ A+
Sbjct: 264 ASAGH-----------------KAFNPEENRLLF--CDLTDIARARHTSLPDIESVIDAL 304
Query: 303 QKEGYVASRSHIASNAIKTN--CPMVACI 329
G+ ASR+ + IKT+ C +V +
Sbjct: 305 SSSGHAASRTMFSPTGIKTDASCDLVESL 333
>sp|Q9SRU7|TRM2_ARATH Probable tRNA (guanine(26)-N(2))-dimethyltransferase 2
OS=Arabidopsis thaliana GN=At3g02320 PE=2 SV=3
Length = 589
Score = 84.7 bits (208), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 90/350 (25%), Positives = 151/350 (43%), Gaps = 44/350 (12%)
Query: 1 MCGCGIRSLRYLAEAKA-DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANR 59
+ G+R+LRY E + V+A D + A N+K GS + H DA R
Sbjct: 128 LSASGLRALRYAREIEGIGQVVALDNDLASVEACQRNIKF--NGSVAISKVESHHTDA-R 184
Query: 60 VLSECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLA 119
V + K FD++D+D +GS S FL + +V GLL T+TD G +
Sbjct: 185 VHMLTHPKE--FDVVDLDPYGSPSIFLDSAIQSVTDGGLLMCTATDMAVLCGGNGEVCYS 242
Query: 120 SYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFS----YYSYHGPVFRVMLRVH 175
YG+Y L Y +E+ LR+L+ A+ ++ P+ S +Y RV +RV+
Sbjct: 243 KYGSYPLRAKYCHEMALRILLASIESHANRYKRYIVPVLSVQMDFY------VRVFVRVY 296
Query: 176 RKALPDNRHYGFISYCNHCGNSQAYSWEELGQMSCPCSNTIGSSSLV------------- 222
A +SY C ++ + +G+ S P +N++ +
Sbjct: 297 TSASAMKNTPLKLSYVYQCIGCDSFHLQPVGR-SLPKNNSVRYLPAIGPVVKQDCNHCGK 355
Query: 223 ---VSGPLWTGPLHDATHITKMLN----LAEKWGWVGDGTGTDLEKLLSRMIDESDPRLP 275
+ GP+W+ P+HD +T +LN + +++ D L + ++D +P
Sbjct: 356 KYNMGGPIWSAPMHDPEWVTSILNSVKSMKDRYP-AYDRISAVLTTVSEELLD-----VP 409
Query: 276 FGYIKLDEMASRAKMNSPSLKTMMSAVQKEGYVASRSHIASNAIKTNCPM 325
++ L + + K SPS SAV Y S +H+ +KT+ PM
Sbjct: 410 L-FLSLHNLCATLKCISPSAAMFRSAVINANYRISGTHVNPLGMKTDAPM 458
>sp|Q3IUJ2|TRM1_NATPD tRNA (guanine(26)-N(2))-dimethyltransferase OS=Natronomonas
pharaonis (strain DSM 2160 / ATCC 35678) GN=trm1 PE=3
SV=1
Length = 366
Score = 81.6 bits (200), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 148/344 (43%), Gaps = 45/344 (13%)
Query: 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRV 60
M GIRS+R A A D + +DA + ++++R D V H + N
Sbjct: 58 MAASGIRSVR-AAAAGYDVTACDIDDDA----VALTRRNLDRNGVD---GTVHHRNVN-- 107
Query: 61 LSECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDG-LLYLTSTDGYSSGGHRPNNSLA 119
++ D++D+D FG+ +F AV+ G L +T+TD G + +
Sbjct: 108 ---AHMHESAHDVVDLDPFGTPMAFADA---AVRSAGEYLCVTATDTAPLCGAHFESGVR 161
Query: 120 SYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYSYHGPVFRVMLRVHRKAL 179
SY A + E+GLR+L+ VR A+ P+ S+ + H R LRV A
Sbjct: 162 SYDAVPRNTEFHAEMGLRVLLSALVRTAARHDIAAEPVLSHVTSH--YVRTYLRVDSGAR 219
Query: 180 PDN---RHYGFISYCNHCGNSQAYSWEELGQMSCPCSNT--IGSSSLVVSGPLWTGPLHD 234
+ H G+I +C C + E G++ P + G S+ +GP+W GP HD
Sbjct: 220 AADALLEHLGYIDHCQRC----LWRDHERGRVPDPTTTCPHCGQSTW-TAGPVWLGPAHD 274
Query: 235 ATHITKMLNLAEKWGWVGD--GTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNS 292
A + + G + D GT LLS + E P Y D+ + N
Sbjct: 275 AAFVDDVA------GAIPDSFGTADKARDLLSTVATEL--HQPTHY---DQHKLYKRWNE 323
Query: 293 P--SLKTMMSAVQKEGYVASRSHIASNAIKTNCPMVACIRIAKE 334
P ++ ++A++ G+ ASR+H KT+ VA IR A E
Sbjct: 324 PNIAMDDFLAALRAAGHEASRTHYGGTTFKTDAD-VADIRNAVE 366
>sp|P0CW65|TRM1_METMP tRNA (guanine(26)-N(2))-dimethyltransferase OS=Methanococcus
maripaludis (strain S2 / LL) GN=trm1 PE=3 SV=1
Length = 373
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 87/343 (25%), Positives = 153/343 (44%), Gaps = 40/343 (11%)
Query: 1 MC----GCGIRSLRYLAEAKAD---FVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVT 53
MC G G R +RY E K + V D N + ++I NLK E + + V
Sbjct: 56 MCDPLGGSGARGIRYAKELKFNGDLKVSIGDINPSAVKMIKENLKLNELENVE-----VF 110
Query: 54 HFDANRVLSECYLKREFFDLIDIDSFGSDSSFLRTVFNA-VKRDGLLYLTSTDGYSSGGH 112
H DAN +LS+ + + F+++D+D FGS +L + A + + GLL +T+TD G
Sbjct: 111 HEDANVLLSKNF---KVFNVVDLDPFGSPVPYLDSGIRASLTKGGLLCMTATDTAVLCGA 167
Query: 113 RPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYSYH-GPVFRVM 171
+ Y A +P+ E+ +R++IG AV+ AS + P+FS+ + H F V
Sbjct: 168 YRKTCIRKYNA--VPLKGDKELAVRLMIGYAVKMASKYDIGLKPIFSHVTDHYARTFMVT 225
Query: 172 LRVHRKALPDNRHYGFISYCNHCGNSQAYSWEELGQMSCPCSNTIGSSSLVVSGPLWTGP 231
R KA + G+I +S+ S++ + S +GP + G
Sbjct: 226 ERGAGKADSAIENLGYIR-----QDSEQKSFKTFEE----------GSEKGYAGPFYLGE 270
Query: 232 LHDATHITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMN 291
+ D + LN A+ + ++ +++SR ES+ G + E+ S K
Sbjct: 271 ISDKNIVQNALNTAKTRNY--SKRAVNILEMISR---ESEIN-QVGCFDIHELCSFIKKL 324
Query: 292 SPSLKTMMSAVQKEGYVASRSHIASNAIKTNCPMVACIRIAKE 334
P + +M +++ G+ +R H +KT+ + + + E
Sbjct: 325 VPPVNDIMENLKENGFKVTRVHYNPYGLKTDAELSDLVVLISE 367
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 128,808,136
Number of Sequences: 539616
Number of extensions: 5322117
Number of successful extensions: 12197
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 11966
Number of HSP's gapped (non-prelim): 100
length of query: 341
length of database: 191,569,459
effective HSP length: 118
effective length of query: 223
effective length of database: 127,894,771
effective search space: 28520533933
effective search space used: 28520533933
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)