Query 019408
Match_columns 341
No_of_seqs 202 out of 1212
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 09:13:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019408.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019408hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1867 TRM1 N2,N2-dimethylgua 100.0 2.9E-95 6E-100 694.7 31.5 316 1-338 60-379 (380)
2 PF02005 TRM: N2,N2-dimethylgu 100.0 1.2E-95 3E-100 716.1 26.4 316 1-333 57-377 (377)
3 TIGR00308 TRM1 tRNA(guanine-26 100.0 7.6E-91 1.6E-95 681.6 34.1 316 1-336 52-372 (374)
4 KOG1253 tRNA methyltransferase 100.0 4.9E-91 1.1E-95 683.0 24.9 323 1-336 117-460 (525)
5 PRK04338 N(2),N(2)-dimethylgua 100.0 1.6E-84 3.5E-89 639.5 34.7 313 1-336 65-381 (382)
6 COG1092 Predicted SAM-dependen 99.8 1.1E-18 2.4E-23 172.0 17.6 138 1-168 225-375 (393)
7 PF03602 Cons_hypoth95: Conser 99.8 1.6E-18 3.4E-23 155.2 9.5 120 1-125 50-178 (183)
8 PRK15128 23S rRNA m(5)C1962 me 99.7 9.5E-17 2.1E-21 159.4 17.5 140 1-170 228-380 (396)
9 COG0742 N6-adenine-specific me 99.7 3.5E-17 7.6E-22 145.8 11.0 117 1-126 51-180 (187)
10 PF10672 Methyltrans_SAM: S-ad 99.7 3.2E-16 6.9E-21 149.0 13.2 133 1-168 131-273 (286)
11 TIGR00095 RNA methyltransferas 99.6 1.4E-15 3E-20 136.8 11.5 118 1-125 57-184 (189)
12 PRK11783 rlmL 23S rRNA m(2)G24 99.5 1.5E-13 3.4E-18 145.7 15.3 131 1-170 546-691 (702)
13 PRK10909 rsmD 16S rRNA m(2)G96 99.4 7.8E-13 1.7E-17 119.9 11.7 115 1-126 61-185 (199)
14 PF02475 Met_10: Met-10+ like- 99.4 1.7E-12 3.7E-17 117.7 7.8 91 1-100 109-199 (200)
15 COG2520 Predicted methyltransf 99.3 4.2E-11 9.2E-16 116.3 14.6 95 1-104 196-290 (341)
16 PF13659 Methyltransf_26: Meth 99.2 1.3E-10 2.8E-15 95.0 9.8 95 1-102 8-114 (117)
17 PRK05031 tRNA (uracil-5-)-meth 99.0 1.8E-09 4E-14 106.3 12.1 93 1-103 214-320 (362)
18 TIGR02085 meth_trns_rumB 23S r 99.0 3.4E-09 7.4E-14 104.9 12.3 92 1-103 241-334 (374)
19 PLN02781 Probable caffeoyl-CoA 98.9 6.8E-09 1.5E-13 96.4 11.6 98 2-103 77-178 (234)
20 TIGR00479 rumA 23S rRNA (uraci 98.9 6.4E-09 1.4E-13 104.6 12.3 95 1-103 300-396 (431)
21 TIGR02143 trmA_only tRNA (urac 98.9 7.2E-09 1.6E-13 101.8 11.9 93 1-103 205-311 (353)
22 COG2263 Predicted RNA methylas 98.9 5.5E-09 1.2E-13 93.1 9.5 78 2-93 54-137 (198)
23 PLN02476 O-methyltransferase 98.9 1.7E-08 3.8E-13 95.8 11.6 97 2-102 127-227 (278)
24 TIGR00138 gidB 16S rRNA methyl 98.9 4.9E-08 1.1E-12 87.2 13.2 127 2-167 51-177 (181)
25 TIGR03704 PrmC_rel_meth putati 98.8 3.1E-08 6.8E-13 92.9 10.9 92 1-102 94-215 (251)
26 PF05175 MTS: Methyltransferas 98.8 9.4E-09 2E-13 90.6 6.7 91 2-103 40-140 (170)
27 PRK14967 putative methyltransf 98.8 3.2E-08 6.9E-13 90.8 10.5 92 1-104 44-160 (223)
28 COG4123 Predicted O-methyltran 98.8 1.4E-07 3.1E-12 88.0 14.8 138 2-179 53-215 (248)
29 PRK13168 rumA 23S rRNA m(5)U19 98.8 3.3E-08 7.1E-13 99.9 11.5 95 1-103 305-400 (443)
30 TIGR03533 L3_gln_methyl protei 98.8 4E-08 8.7E-13 93.8 11.5 94 1-103 129-251 (284)
31 PRK03522 rumB 23S rRNA methylu 98.8 5.1E-08 1.1E-12 94.3 12.2 92 1-103 181-274 (315)
32 PRK00377 cbiT cobalt-precorrin 98.8 8.8E-08 1.9E-12 86.3 12.2 94 2-102 49-144 (198)
33 COG2265 TrmA SAM-dependent met 98.8 4.8E-08 1E-12 98.3 11.1 94 1-103 301-396 (432)
34 TIGR00446 nop2p NOL1/NOP2/sun 98.7 1.1E-07 2.3E-12 89.8 12.5 94 1-104 79-199 (264)
35 PRK11805 N5-glutamine S-adenos 98.7 7.2E-08 1.6E-12 93.1 11.3 92 2-102 142-262 (307)
36 PRK00811 spermidine synthase; 98.7 1.2E-07 2.7E-12 90.4 12.3 99 2-103 85-191 (283)
37 PF12847 Methyltransf_18: Meth 98.7 8.2E-08 1.8E-12 77.6 9.2 94 2-103 10-111 (112)
38 TIGR02469 CbiT precorrin-6Y C5 98.7 1.1E-07 2.4E-12 77.7 10.1 95 1-103 27-122 (124)
39 COG2242 CobL Precorrin-6B meth 98.7 1.5E-07 3.2E-12 84.1 10.9 94 2-104 43-136 (187)
40 PRK10742 putative methyltransf 98.7 6.7E-08 1.5E-12 90.1 8.7 76 1-81 96-176 (250)
41 PRK04457 spermidine synthase; 98.7 1.5E-07 3.2E-12 89.0 11.0 95 2-103 75-177 (262)
42 COG2264 PrmA Ribosomal protein 98.7 4.1E-08 8.9E-13 93.9 7.2 90 2-101 171-261 (300)
43 PRK00107 gidB 16S rRNA methylt 98.7 1.4E-07 3.1E-12 84.8 9.9 91 2-102 54-144 (187)
44 TIGR00536 hemK_fam HemK family 98.6 1.7E-07 3.7E-12 89.3 10.7 94 1-103 122-244 (284)
45 PRK14902 16S rRNA methyltransf 98.6 1.6E-07 3.5E-12 95.0 11.0 95 1-104 258-379 (444)
46 PRK14901 16S rRNA methyltransf 98.6 1.8E-07 3.9E-12 94.4 11.2 98 1-104 260-384 (434)
47 PRK07402 precorrin-6B methylas 98.6 3.7E-07 7.9E-12 82.0 12.1 95 1-103 48-142 (196)
48 PF01596 Methyltransf_3: O-met 98.6 1.6E-07 3.5E-12 85.6 9.6 99 2-104 54-156 (205)
49 PF09445 Methyltransf_15: RNA 98.6 9.7E-08 2.1E-12 83.9 7.6 75 1-82 7-82 (163)
50 TIGR01177 conserved hypothetic 98.6 1.5E-07 3.3E-12 91.4 9.7 93 1-104 190-295 (329)
51 PRK08287 cobalt-precorrin-6Y C 98.6 2.4E-07 5.3E-12 82.5 10.2 91 2-103 40-131 (187)
52 TIGR00537 hemK_rel_arch HemK-r 98.6 2.4E-07 5.1E-12 82.0 9.2 88 2-103 28-140 (179)
53 PRK14903 16S rRNA methyltransf 98.6 5.2E-07 1.1E-11 91.0 12.7 95 1-104 245-366 (431)
54 PRK15001 SAM-dependent 23S rib 98.6 3E-07 6.6E-12 91.1 10.1 95 2-103 237-340 (378)
55 PRK10901 16S rRNA methyltransf 98.5 5.2E-07 1.1E-11 90.8 11.4 95 1-104 252-372 (427)
56 COG2890 HemK Methylase of poly 98.5 3.7E-07 8.1E-12 87.0 9.8 92 2-104 119-239 (280)
57 PF06325 PrmA: Ribosomal prote 98.5 5.7E-08 1.2E-12 93.2 4.2 86 2-101 170-257 (295)
58 PRK14904 16S rRNA methyltransf 98.5 5.7E-07 1.2E-11 91.0 11.4 93 1-104 258-377 (445)
59 PLN02589 caffeoyl-CoA O-methyl 98.5 8.7E-07 1.9E-11 83.1 11.4 96 2-101 88-188 (247)
60 TIGR00406 prmA ribosomal prote 98.5 4.6E-07 9.9E-12 86.6 9.6 90 2-102 168-258 (288)
61 TIGR03534 RF_mod_PrmC protein- 98.5 7.1E-07 1.5E-11 82.4 10.4 92 2-103 96-217 (251)
62 PRK01544 bifunctional N5-gluta 98.5 6.3E-07 1.4E-11 92.1 10.9 92 2-102 147-268 (506)
63 COG4122 Predicted O-methyltran 98.5 1.3E-06 2.9E-11 80.3 11.7 94 2-101 68-164 (219)
64 PRK09489 rsmC 16S ribosomal RN 98.5 4.4E-07 9.6E-12 88.9 9.1 91 2-104 205-304 (342)
65 PF13847 Methyltransf_31: Meth 98.5 3.2E-07 6.9E-12 78.9 6.8 95 2-104 12-111 (152)
66 PRK00121 trmB tRNA (guanine-N( 98.5 2.1E-06 4.5E-11 77.9 12.4 96 2-103 49-156 (202)
67 PRK03612 spermidine synthase; 98.5 2.3E-06 5.1E-11 88.3 14.0 99 2-103 306-415 (521)
68 TIGR00091 tRNA (guanine-N(7)-) 98.4 1.6E-06 3.6E-11 77.9 10.8 99 2-107 25-135 (194)
69 PLN02823 spermine synthase 98.4 1.6E-06 3.4E-11 84.8 11.4 99 2-104 112-221 (336)
70 COG2813 RsmC 16S RNA G1207 met 98.4 8.2E-07 1.8E-11 84.8 9.1 92 2-104 167-267 (300)
71 PRK14966 unknown domain/N5-glu 98.4 1.2E-06 2.6E-11 87.5 10.6 70 2-80 260-330 (423)
72 PF01170 UPF0020: Putative RNA 98.4 1.8E-06 3.8E-11 77.1 10.6 95 1-104 36-151 (179)
73 PRK00517 prmA ribosomal protei 98.4 9.8E-07 2.1E-11 82.5 8.9 84 2-102 128-212 (250)
74 PF05958 tRNA_U5-meth_tr: tRNA 98.4 8E-07 1.7E-11 87.4 8.6 93 1-103 204-310 (352)
75 PRK01581 speE spermidine synth 98.4 7.9E-06 1.7E-10 80.4 15.4 129 2-161 159-299 (374)
76 COG2227 UbiG 2-polyprenyl-3-me 98.4 8.3E-07 1.8E-11 82.1 7.2 90 2-104 68-161 (243)
77 TIGR00417 speE spermidine synt 98.4 3.7E-06 8E-11 79.6 11.9 97 2-102 81-185 (270)
78 TIGR00563 rsmB ribosomal RNA s 98.4 2E-06 4.4E-11 86.5 10.6 97 1-104 246-368 (426)
79 KOG3420 Predicted RNA methylas 98.3 8.2E-07 1.8E-11 76.2 5.9 82 2-94 57-144 (185)
80 PRK09328 N5-glutamine S-adenos 98.3 2.2E-06 4.8E-11 80.5 9.6 92 2-103 117-238 (275)
81 PRK11036 putative S-adenosyl-L 98.3 4.2E-06 9.2E-11 78.3 11.4 93 2-103 53-149 (255)
82 PLN02366 spermidine synthase 98.3 4.7E-06 1E-10 80.6 11.9 99 2-103 100-206 (308)
83 PRK14968 putative methyltransf 98.3 3E-06 6.5E-11 74.6 9.6 92 2-104 32-149 (188)
84 TIGR00080 pimt protein-L-isoas 98.3 2.2E-06 4.8E-11 78.2 8.8 90 2-102 86-176 (215)
85 PRK11933 yebU rRNA (cytosine-C 98.3 5E-06 1.1E-10 84.7 11.9 95 1-104 121-242 (470)
86 COG1041 Predicted DNA modifica 98.3 2E-06 4.4E-11 83.5 7.8 92 1-103 205-310 (347)
87 KOG1663 O-methyltransferase [S 98.2 9.4E-06 2E-10 74.6 10.2 96 4-103 84-183 (237)
88 PRK14121 tRNA (guanine-N(7)-)- 98.2 1.6E-05 3.4E-10 79.1 11.4 99 2-108 131-239 (390)
89 PRK13944 protein-L-isoaspartat 98.2 9.9E-06 2.1E-10 73.5 9.3 92 2-103 81-173 (205)
90 TIGR02752 MenG_heptapren 2-hep 98.1 1.7E-05 3.8E-10 72.5 10.7 95 1-104 53-152 (231)
91 cd02440 AdoMet_MTases S-adenos 98.1 3.7E-05 8.1E-10 58.8 10.3 92 2-102 7-103 (107)
92 PF01564 Spermine_synth: Sperm 98.1 1.4E-05 3.1E-10 74.8 9.4 129 3-161 86-222 (246)
93 smart00650 rADc Ribosomal RNA 98.1 1.3E-05 2.9E-10 70.2 8.4 89 1-102 21-112 (169)
94 PRK13942 protein-L-isoaspartat 98.1 1.5E-05 3.3E-10 72.8 8.6 91 2-103 85-176 (212)
95 PHA03411 putative methyltransf 98.1 2.9E-05 6.2E-10 73.7 10.3 66 1-81 72-138 (279)
96 PLN02396 hexaprenyldihydroxybe 98.0 4.1E-05 9E-10 74.5 11.1 92 2-103 140-235 (322)
97 PRK11873 arsM arsenite S-adeno 98.0 6.8E-05 1.5E-09 70.6 11.0 93 2-103 86-183 (272)
98 PLN02672 methionine S-methyltr 97.9 4.6E-05 1E-09 84.1 10.8 75 2-79 127-213 (1082)
99 PHA03412 putative methyltransf 97.9 2.4E-05 5.2E-10 72.8 7.3 82 2-98 58-158 (241)
100 PRK00312 pcm protein-L-isoaspa 97.9 4.7E-05 1E-09 69.1 8.4 90 2-104 87-176 (212)
101 TIGR00477 tehB tellurite resis 97.9 9.7E-05 2.1E-09 66.5 10.0 89 2-103 39-134 (195)
102 PRK11207 tellurite resistance 97.9 0.00013 2.8E-09 65.8 10.8 88 2-101 39-132 (197)
103 PRK13943 protein-L-isoaspartat 97.8 0.00012 2.5E-09 71.3 10.2 90 2-102 89-179 (322)
104 COG2226 UbiE Methylase involve 97.8 0.00015 3.2E-09 67.7 10.4 94 2-104 60-157 (238)
105 PRK11783 rlmL 23S rRNA m(2)G24 97.8 0.0001 2.2E-09 78.8 10.6 83 19-107 258-351 (702)
106 KOG2730 Methylase [General fun 97.8 4.5E-05 9.7E-10 69.8 6.5 76 1-82 102-178 (263)
107 PRK12335 tellurite resistance 97.8 0.0001 2.2E-09 70.3 9.2 87 2-101 129-221 (287)
108 PF08704 GCD14: tRNA methyltra 97.8 6.5E-05 1.4E-09 70.5 7.6 97 2-104 49-147 (247)
109 COG4262 Predicted spermidine s 97.8 0.00023 5E-09 69.6 11.4 96 8-106 303-410 (508)
110 PLN02244 tocopherol O-methyltr 97.8 0.00012 2.6E-09 71.7 9.1 93 2-103 127-223 (340)
111 smart00828 PKS_MT Methyltransf 97.7 0.00013 2.8E-09 66.4 8.7 93 2-103 8-104 (224)
112 COG0144 Sun tRNA and rRNA cyto 97.7 0.0002 4.4E-09 70.6 10.3 96 2-104 165-288 (355)
113 PRK05134 bifunctional 3-demeth 97.7 0.00031 6.8E-09 64.4 10.9 91 2-103 57-151 (233)
114 COG0116 Predicted N6-adenine-s 97.7 7.3E-05 1.6E-09 73.8 6.9 72 1-81 199-311 (381)
115 COG0421 SpeE Spermidine syntha 97.7 0.00037 7.9E-09 66.7 11.4 97 3-103 86-190 (282)
116 PF08241 Methyltransf_11: Meth 97.7 7E-05 1.5E-09 57.7 5.1 87 2-101 5-95 (95)
117 PF05185 PRMT5: PRMT5 arginine 97.7 5.4E-05 1.2E-09 76.8 5.6 90 2-100 195-294 (448)
118 COG2521 Predicted archaeal met 97.7 4.6E-05 1E-09 70.4 4.5 93 2-100 143-242 (287)
119 PRK01683 trans-aconitate 2-met 97.6 0.00018 4E-09 67.0 8.4 86 2-102 40-129 (258)
120 PLN03075 nicotianamine synthas 97.6 0.00026 5.5E-09 68.1 9.0 92 3-102 131-232 (296)
121 TIGR01983 UbiG ubiquinone bios 97.6 0.00051 1.1E-08 62.4 10.7 92 2-103 54-149 (224)
122 PLN02336 phosphoethanolamine N 97.6 0.00017 3.7E-09 73.4 8.1 91 2-103 275-369 (475)
123 PRK00216 ubiE ubiquinone/menaq 97.6 0.00033 7.1E-09 63.7 9.3 95 2-104 60-159 (239)
124 PRK15451 tRNA cmo(5)U34 methyl 97.6 0.00033 7.1E-09 65.3 9.3 92 2-103 65-164 (247)
125 PRK11727 23S rRNA mA1618 methy 97.6 0.00016 3.4E-09 70.4 7.3 73 2-78 123-197 (321)
126 PRK04266 fibrillarin; Provisio 97.6 0.00034 7.3E-09 64.8 9.1 92 2-102 81-175 (226)
127 PF10294 Methyltransf_16: Puta 97.6 0.00034 7.4E-09 61.9 8.3 100 2-104 54-157 (173)
128 KOG2904 Predicted methyltransf 97.5 0.00029 6.4E-09 66.5 7.9 73 1-80 156-233 (328)
129 KOG2078 tRNA modification enzy 97.5 6.8E-05 1.5E-09 74.3 3.8 57 1-62 257-313 (495)
130 KOG2187 tRNA uracil-5-methyltr 97.5 0.00019 4.1E-09 72.8 6.6 95 1-103 391-490 (534)
131 COG2519 GCD14 tRNA(1-methylade 97.5 0.00059 1.3E-08 63.9 9.3 93 2-104 103-196 (256)
132 PF01209 Ubie_methyltran: ubiE 97.5 0.0003 6.4E-09 65.4 7.3 94 2-104 56-154 (233)
133 PF01861 DUF43: Protein of unk 97.5 0.00048 1E-08 64.1 8.3 90 7-104 57-150 (243)
134 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.5 0.0011 2.4E-08 63.3 11.1 95 2-104 94-219 (283)
135 PLN02490 MPBQ/MSBQ methyltrans 97.4 0.00057 1.2E-08 67.0 9.0 90 2-103 122-215 (340)
136 PTZ00098 phosphoethanolamine N 97.4 0.00042 9.2E-09 65.4 7.8 90 2-103 61-156 (263)
137 COG4076 Predicted RNA methylas 97.4 0.00017 3.7E-09 64.6 4.6 86 2-100 41-132 (252)
138 PLN02233 ubiquinone biosynthes 97.4 0.00088 1.9E-08 63.1 9.8 96 2-103 82-182 (261)
139 KOG1499 Protein arginine N-met 97.4 0.00029 6.3E-09 68.5 6.1 89 2-100 69-164 (346)
140 PRK10258 biotin biosynthesis p 97.4 0.00039 8.5E-09 64.6 6.8 86 2-103 51-140 (251)
141 PF05401 NodS: Nodulation prot 97.3 0.00073 1.6E-08 61.1 7.1 113 2-146 52-171 (201)
142 PRK08317 hypothetical protein; 97.3 0.0014 3.1E-08 59.2 9.2 94 2-105 28-126 (241)
143 PRK06922 hypothetical protein; 97.3 0.0013 2.9E-08 69.1 10.0 95 2-104 427-538 (677)
144 COG3286 Uncharacterized protei 97.3 0.0012 2.6E-08 58.9 8.2 74 259-337 57-130 (204)
145 KOG1270 Methyltransferases [Co 97.3 0.00043 9.4E-09 65.0 5.7 93 2-103 98-195 (282)
146 TIGR01934 MenG_MenH_UbiE ubiqu 97.3 0.0015 3.3E-08 58.7 9.0 90 2-103 48-143 (223)
147 PF02384 N6_Mtase: N-6 DNA Met 97.3 0.00019 4.2E-09 68.8 3.3 96 1-101 54-181 (311)
148 PF13649 Methyltransf_25: Meth 97.2 0.00085 1.8E-08 53.4 6.4 86 2-97 6-101 (101)
149 PRK11705 cyclopropane fatty ac 97.2 0.0019 4.2E-08 64.3 10.2 86 2-103 176-267 (383)
150 PRK00536 speE spermidine synth 97.2 0.0027 5.9E-08 60.1 10.5 88 3-104 82-172 (262)
151 PRK14103 trans-aconitate 2-met 97.2 0.0014 3E-08 61.3 8.2 85 2-103 38-126 (255)
152 PRK15068 tRNA mo(5)U34 methylt 97.2 0.0035 7.5E-08 61.0 11.3 91 2-102 131-225 (322)
153 TIGR00740 methyltransferase, p 97.2 0.0024 5.2E-08 59.0 9.7 92 2-103 62-161 (239)
154 TIGR00452 methyltransferase, p 97.2 0.0025 5.5E-08 61.8 9.9 92 2-103 130-225 (314)
155 PF02390 Methyltransf_4: Putat 97.1 0.0027 5.8E-08 57.5 8.8 100 2-108 26-137 (195)
156 TIGR02072 BioC biotin biosynth 97.1 0.0015 3.4E-08 59.1 7.3 89 2-103 43-135 (240)
157 PF02353 CMAS: Mycolic acid cy 97.1 0.0022 4.9E-08 61.0 8.5 89 2-102 71-165 (273)
158 COG3897 Predicted methyltransf 97.1 0.0011 2.3E-08 60.0 5.8 91 2-108 88-183 (218)
159 PF09840 DUF2067: Uncharacteri 97.0 0.0037 7.9E-08 56.4 8.7 75 259-338 54-128 (190)
160 PF03848 TehB: Tellurite resis 97.0 0.00073 1.6E-08 61.1 4.1 93 2-107 39-138 (192)
161 PF01135 PCMT: Protein-L-isoas 97.0 0.0016 3.4E-08 59.7 6.2 91 2-104 81-173 (209)
162 COG2518 Pcm Protein-L-isoaspar 97.0 0.0017 3.6E-08 59.4 6.3 85 2-101 81-167 (209)
163 TIGR02987 met_A_Alw26 type II 97.0 0.0024 5.1E-08 66.1 8.1 76 1-81 39-124 (524)
164 TIGR02021 BchM-ChlM magnesium 97.0 0.0034 7.5E-08 57.1 8.3 64 2-78 64-128 (219)
165 PRK11188 rrmJ 23S rRNA methylt 96.9 0.004 8.7E-08 56.8 8.0 84 2-101 60-163 (209)
166 KOG1500 Protein arginine N-met 96.8 0.0022 4.9E-08 62.2 5.9 139 2-170 186-330 (517)
167 TIGR00438 rrmJ cell division p 96.8 0.005 1.1E-07 54.8 7.8 84 2-102 41-145 (188)
168 PTZ00338 dimethyladenosine tra 96.8 0.0057 1.2E-07 58.9 8.6 77 2-90 45-122 (294)
169 PF08242 Methyltransf_12: Meth 96.8 0.00013 2.9E-09 57.7 -2.4 91 2-99 5-99 (99)
170 TIGR02716 C20_methyl_CrtF C-20 96.7 0.0071 1.5E-07 58.0 8.5 92 2-104 158-255 (306)
171 PTZ00146 fibrillarin; Provisio 96.6 0.11 2.5E-06 49.9 16.2 91 2-101 141-235 (293)
172 TIGR03438 probable methyltrans 96.6 0.024 5.3E-07 54.5 11.8 113 2-123 72-192 (301)
173 COG2230 Cfa Cyclopropane fatty 96.6 0.012 2.6E-07 56.2 9.2 89 2-102 81-175 (283)
174 KOG3191 Predicted N6-DNA-methy 96.6 0.0086 1.9E-07 53.6 7.4 68 2-80 52-121 (209)
175 PF13578 Methyltransf_24: Meth 96.5 0.0017 3.6E-08 52.2 2.5 77 18-101 24-103 (106)
176 KOG1227 Putative methyltransfe 96.5 0.0009 2E-08 63.9 1.0 93 1-102 202-296 (351)
177 COG1568 Predicted methyltransf 96.4 0.0063 1.4E-07 57.7 6.0 94 6-106 164-263 (354)
178 TIGR03840 TMPT_Se_Te thiopurin 96.4 0.008 1.7E-07 55.1 6.5 96 1-104 42-154 (213)
179 TIGR03587 Pse_Me-ase pseudamin 96.4 0.014 3E-07 53.1 7.8 62 2-78 52-113 (204)
180 PLN02336 phosphoethanolamine N 96.3 0.013 2.8E-07 59.7 8.1 92 2-104 46-143 (475)
181 PLN02585 magnesium protoporphy 96.3 0.036 7.7E-07 53.9 10.7 68 2-78 153-221 (315)
182 PRK13255 thiopurine S-methyltr 96.3 0.0089 1.9E-07 55.0 6.0 94 1-103 45-156 (218)
183 COG4976 Predicted methyltransf 96.2 0.0036 7.8E-08 58.0 2.8 91 2-106 134-228 (287)
184 PRK07580 Mg-protoporphyrin IX 96.1 0.03 6.4E-07 50.9 8.5 62 2-76 72-133 (230)
185 KOG1122 tRNA and rRNA cytosine 96.1 0.026 5.6E-07 56.4 8.5 81 16-104 265-371 (460)
186 PRK00274 ksgA 16S ribosomal RN 96.0 0.033 7.3E-07 52.7 8.9 77 2-92 51-128 (272)
187 PRK14896 ksgA 16S ribosomal RN 96.0 0.023 4.9E-07 53.4 7.7 74 2-90 38-112 (258)
188 cd00315 Cyt_C5_DNA_methylase C 95.8 0.011 2.4E-07 56.2 4.6 64 1-78 7-70 (275)
189 smart00138 MeTrc Methyltransfe 95.7 0.02 4.3E-07 54.1 5.8 102 2-107 108-246 (264)
190 PRK11088 rrmA 23S rRNA methylt 95.7 0.018 4E-07 54.3 5.5 84 2-102 94-180 (272)
191 PRK11524 putative methyltransf 95.6 0.027 5.9E-07 53.7 6.3 52 49-102 8-79 (284)
192 KOG1271 Methyltransferases [Ge 95.5 0.029 6.4E-07 50.4 5.7 93 2-103 76-181 (227)
193 COG0220 Predicted S-adenosylme 95.5 0.15 3.3E-06 47.3 10.8 101 2-109 57-169 (227)
194 PF13489 Methyltransf_23: Meth 95.5 0.034 7.4E-07 47.0 5.9 82 2-104 31-116 (161)
195 PF05971 Methyltransf_10: Prot 95.4 0.037 8.1E-07 53.3 6.5 129 4-154 114-250 (299)
196 PF04445 SAM_MT: Putative SAM- 95.1 0.015 3.4E-07 54.0 2.9 74 2-80 84-162 (234)
197 PF04378 RsmJ: Ribosomal RNA s 95.0 0.17 3.7E-06 47.5 9.4 133 3-150 67-235 (245)
198 PF00107 ADH_zinc_N: Zinc-bind 94.9 0.13 2.8E-06 42.2 7.6 90 3-104 1-90 (130)
199 PF04816 DUF633: Family of unk 94.9 0.058 1.3E-06 49.3 5.8 130 5-176 9-140 (205)
200 PRK00050 16S rRNA m(4)C1402 me 94.8 0.12 2.6E-06 49.8 8.2 70 2-78 28-98 (296)
201 PF02527 GidB: rRNA small subu 94.8 0.21 4.6E-06 44.8 9.1 92 2-103 57-148 (184)
202 KOG1540 Ubiquinone biosynthesi 94.8 0.16 3.4E-06 48.0 8.5 92 2-100 109-211 (296)
203 PRK09880 L-idonate 5-dehydroge 94.7 0.14 2.9E-06 49.6 8.5 87 2-102 179-265 (343)
204 TIGR01444 fkbM_fam methyltrans 94.7 0.084 1.8E-06 44.2 6.2 50 2-57 7-57 (143)
205 PHA01634 hypothetical protein 94.7 0.08 1.7E-06 44.9 5.6 67 2-81 37-103 (156)
206 PLN02232 ubiquinone biosynthes 94.5 0.11 2.4E-06 45.1 6.5 78 21-104 1-82 (160)
207 PF05430 Methyltransf_30: S-ad 94.4 0.072 1.6E-06 44.8 4.8 52 49-104 32-90 (124)
208 KOG2899 Predicted methyltransf 94.2 0.15 3.2E-06 47.8 6.9 98 2-102 67-208 (288)
209 PRK13699 putative methylase; P 94.1 0.13 2.8E-06 47.6 6.4 49 51-101 3-70 (227)
210 PRK01544 bifunctional N5-gluta 94.0 0.51 1.1E-05 48.9 11.2 99 2-108 356-466 (506)
211 COG1064 AdhP Zn-dependent alco 94.0 0.32 6.9E-06 47.8 9.1 84 1-103 175-259 (339)
212 PF06962 rRNA_methylase: Putat 93.8 0.18 4E-06 43.3 6.3 79 19-103 1-92 (140)
213 TIGR00755 ksgA dimethyladenosi 93.7 0.21 4.6E-06 46.6 7.1 75 2-91 38-116 (253)
214 COG0357 GidB Predicted S-adeno 93.7 1.9 4.2E-05 39.7 13.1 136 2-177 76-213 (215)
215 PF11599 AviRa: RRNA methyltra 93.6 0.26 5.7E-06 45.4 7.2 102 1-103 59-214 (246)
216 PRK06202 hypothetical protein; 93.4 0.17 3.6E-06 46.4 5.8 86 2-101 69-164 (232)
217 PF05724 TPMT: Thiopurine S-me 93.3 0.045 9.7E-07 50.4 1.8 97 1-103 45-156 (218)
218 TIGR03451 mycoS_dep_FDH mycoth 93.2 0.54 1.2E-05 45.7 9.4 90 3-103 187-276 (358)
219 PF12147 Methyltransf_20: Puta 93.0 0.85 1.8E-05 43.9 10.0 96 2-103 144-249 (311)
220 PF03059 NAS: Nicotianamine sy 93.0 0.36 7.9E-06 46.1 7.5 93 3-103 128-230 (276)
221 KOG2915 tRNA(1-methyladenosine 92.9 0.43 9.4E-06 45.5 7.6 90 2-100 114-207 (314)
222 PRK13256 thiopurine S-methyltr 92.1 0.28 6.1E-06 45.5 5.3 96 2-101 52-161 (226)
223 PF08003 Methyltransf_9: Prote 92.0 1.2 2.6E-05 43.1 9.7 91 2-102 124-218 (315)
224 TIGR02081 metW methionine bios 91.9 0.52 1.1E-05 42.0 6.7 77 2-93 22-102 (194)
225 COG3963 Phospholipid N-methylt 91.8 0.69 1.5E-05 41.2 7.2 89 2-101 57-154 (194)
226 PRK10309 galactitol-1-phosphat 91.8 0.96 2.1E-05 43.6 9.1 88 3-101 171-258 (347)
227 KOG1975 mRNA cap methyltransfe 91.8 0.24 5.2E-06 48.3 4.6 103 2-106 126-240 (389)
228 KOG1562 Spermidine synthase [A 91.7 1.3 2.8E-05 42.8 9.3 84 16-104 144-237 (337)
229 PRK05785 hypothetical protein; 91.6 1.1 2.4E-05 41.2 8.8 77 2-96 60-140 (226)
230 TIGR00478 tly hemolysin TlyA f 91.6 0.32 7E-06 45.1 5.2 84 2-101 84-169 (228)
231 TIGR03366 HpnZ_proposed putati 91.4 1.5 3.3E-05 41.0 9.8 88 3-103 131-218 (280)
232 cd08239 THR_DH_like L-threonin 91.2 1.3 2.9E-05 42.3 9.3 89 3-103 174-262 (339)
233 cd08281 liver_ADH_like1 Zinc-d 91.1 1.1 2.4E-05 43.8 8.8 88 3-102 202-289 (371)
234 COG0604 Qor NADPH:quinone redu 90.8 1.4 3E-05 43.0 8.9 87 2-101 153-239 (326)
235 TIGR01202 bchC 2-desacetyl-2-h 90.5 0.72 1.6E-05 44.0 6.7 77 2-102 154-230 (308)
236 cd08293 PTGR2 Prostaglandin re 89.9 2.2 4.8E-05 40.8 9.6 87 3-101 166-252 (345)
237 COG0270 Dcm Site-specific DNA 89.9 0.6 1.3E-05 45.5 5.7 66 1-78 10-75 (328)
238 KOG0024 Sorbitol dehydrogenase 89.9 1.7 3.8E-05 42.4 8.6 87 4-101 181-271 (354)
239 PF03291 Pox_MCEL: mRNA cappin 89.8 0.38 8.3E-06 47.1 4.2 106 3-109 72-192 (331)
240 PRK01747 mnmC bifunctional tRN 89.2 0.83 1.8E-05 48.7 6.5 52 49-104 148-206 (662)
241 TIGR00006 S-adenosyl-methyltra 89.2 2.2 4.7E-05 41.4 8.8 78 3-87 30-108 (305)
242 PLN02740 Alcohol dehydrogenase 89.2 2.3 5E-05 41.8 9.2 87 3-101 209-298 (381)
243 PLN02827 Alcohol dehydrogenase 89.1 2.6 5.7E-05 41.5 9.6 87 3-102 204-294 (378)
244 TIGR02825 B4_12hDH leukotriene 88.9 3.2 7E-05 39.5 9.8 85 3-102 150-236 (325)
245 PF00145 DNA_methylase: C-5 cy 88.0 0.66 1.4E-05 44.0 4.4 63 1-78 7-69 (335)
246 PF00072 Response_reg: Respons 88.0 6 0.00013 30.7 9.3 77 20-104 1-80 (112)
247 cd08294 leukotriene_B4_DH_like 87.8 3.3 7.2E-05 39.1 9.1 86 3-102 155-240 (329)
248 KOG2671 Putative RNA methylase 87.7 0.22 4.7E-06 48.9 0.8 71 1-80 216-295 (421)
249 COG2961 ComJ Protein involved 87.6 8.6 0.00019 36.4 11.2 120 15-150 108-266 (279)
250 cd08291 ETR_like_1 2-enoyl thi 87.1 5.1 0.00011 38.1 9.9 88 3-103 155-242 (324)
251 TIGR00675 dcm DNA-methyltransf 86.9 1.2 2.6E-05 43.2 5.5 63 1-78 5-67 (315)
252 COG2384 Predicted SAM-dependen 86.8 1.1 2.4E-05 41.4 4.8 82 5-94 28-111 (226)
253 cd08230 glucose_DH Glucose deh 86.7 3.2 6.9E-05 40.2 8.4 84 3-103 183-269 (355)
254 TIGR03201 dearomat_had 6-hydro 86.6 3.7 8.1E-05 39.7 8.8 89 3-102 177-271 (349)
255 COG1063 Tdh Threonine dehydrog 86.5 4.2 9E-05 39.9 9.2 90 3-104 176-270 (350)
256 cd08265 Zn_ADH3 Alcohol dehydr 86.3 5.2 0.00011 39.3 9.8 89 3-102 214-306 (384)
257 PF06080 DUF938: Protein of un 85.8 1.8 4E-05 39.5 5.7 149 2-160 34-193 (204)
258 KOG1501 Arginine N-methyltrans 85.5 1.2 2.6E-05 45.1 4.7 48 2-54 75-122 (636)
259 COG0300 DltE Short-chain dehyd 85.3 33 0.0007 32.7 14.1 142 2-161 13-188 (265)
260 cd08233 butanediol_DH_like (2R 85.1 5.7 0.00012 38.2 9.3 88 3-101 183-270 (351)
261 cd08300 alcohol_DH_class_III c 85.1 6.2 0.00013 38.5 9.6 87 3-101 197-286 (368)
262 TIGR02822 adh_fam_2 zinc-bindi 84.5 5.1 0.00011 38.6 8.6 78 3-103 176-254 (329)
263 TIGR02819 fdhA_non_GSH formald 83.9 6.6 0.00014 39.1 9.3 90 3-103 196-299 (393)
264 COG1062 AdhC Zn-dependent alco 83.8 7.4 0.00016 38.4 9.2 89 2-102 195-284 (366)
265 KOG2352 Predicted spermine/spe 83.8 1.5 3.2E-05 44.9 4.6 83 15-102 317-415 (482)
266 PLN03154 putative allyl alcoho 83.7 7.1 0.00015 37.9 9.3 86 3-102 170-257 (348)
267 PRK09424 pntA NAD(P) transhydr 83.6 10 0.00022 39.4 10.7 92 4-105 176-287 (509)
268 cd08301 alcohol_DH_plants Plan 83.6 7.3 0.00016 37.9 9.4 88 3-102 198-288 (369)
269 cd08295 double_bond_reductase_ 83.2 7.7 0.00017 37.1 9.2 87 3-102 163-250 (338)
270 KOG0820 Ribosomal RNA adenine 82.9 4.6 9.9E-05 38.7 7.1 73 3-87 68-141 (315)
271 cd08278 benzyl_alcohol_DH Benz 82.8 9.2 0.0002 37.2 9.7 88 3-103 197-285 (365)
272 PF02082 Rrf2: Transcriptional 82.8 2.5 5.5E-05 32.5 4.6 55 279-334 26-82 (83)
273 cd05278 FDH_like Formaldehyde 82.8 8.4 0.00018 36.7 9.3 88 3-101 178-265 (347)
274 PF07021 MetW: Methionine bios 82.7 4.7 0.0001 36.5 6.9 139 2-166 22-172 (193)
275 TIGR02818 adh_III_F_hyde S-(hy 82.6 8.5 0.00018 37.6 9.4 87 3-101 196-285 (368)
276 cd08285 NADP_ADH NADP(H)-depen 82.3 8.2 0.00018 37.1 9.1 88 3-101 177-264 (351)
277 KOG1661 Protein-L-isoaspartate 80.9 3.7 8.1E-05 37.9 5.6 94 2-101 91-191 (237)
278 PRK04148 hypothetical protein; 80.6 2.6 5.6E-05 36.0 4.2 70 3-92 26-97 (134)
279 cd08254 hydroxyacyl_CoA_DH 6-h 80.5 9.3 0.0002 36.0 8.6 88 3-103 176-263 (338)
280 PF00106 adh_short: short chai 80.4 18 0.0004 30.3 9.7 71 2-78 7-88 (167)
281 cd08277 liver_alcohol_DH_like 80.3 12 0.00026 36.4 9.5 87 3-102 195-285 (365)
282 KOG2361 Predicted methyltransf 79.9 2.6 5.7E-05 39.6 4.3 92 2-101 80-181 (264)
283 KOG2198 tRNA cytosine-5-methyl 79.7 5.1 0.00011 39.8 6.5 80 19-104 185-296 (375)
284 cd05279 Zn_ADH1 Liver alcohol 78.9 15 0.00033 35.7 9.7 89 3-103 194-285 (365)
285 PRK07832 short chain dehydroge 78.8 45 0.00098 30.7 12.5 37 2-39 7-46 (272)
286 PLN02702 L-idonate 5-dehydroge 78.6 18 0.00039 35.0 10.1 91 3-103 192-285 (364)
287 KOG3010 Methyltransferase [Gen 78.5 1.3 2.7E-05 41.7 1.8 91 2-103 42-137 (261)
288 cd08240 6_hydroxyhexanoate_dh_ 78.0 13 0.00029 35.6 8.9 88 3-102 186-273 (350)
289 PRK07109 short chain dehydroge 77.9 69 0.0015 30.9 14.1 70 2-78 15-93 (334)
290 KOG3201 Uncharacterized conser 77.8 4.4 9.6E-05 36.0 4.9 96 4-103 41-140 (201)
291 cd08231 MDR_TM0436_like Hypoth 76.9 15 0.00033 35.3 9.1 88 3-102 188-279 (361)
292 PRK07231 fabG 3-ketoacyl-(acyl 76.5 48 0.001 29.6 11.7 69 2-78 12-89 (251)
293 PF02086 MethyltransfD12: D12 76.5 2.1 4.5E-05 39.5 2.7 32 1-34 28-59 (260)
294 cd08232 idonate-5-DH L-idonate 76.4 14 0.0003 35.1 8.5 84 4-101 177-260 (339)
295 TIGR00692 tdh L-threonine 3-de 76.3 18 0.0004 34.5 9.4 88 3-101 172-259 (340)
296 cd08284 FDH_like_2 Glutathione 76.3 22 0.00048 33.8 9.9 87 3-101 178-264 (344)
297 PRK08339 short chain dehydroge 76.3 57 0.0012 30.0 12.4 37 2-39 15-54 (263)
298 PRK05396 tdh L-threonine 3-deh 76.1 16 0.00034 34.9 8.8 90 3-103 174-263 (341)
299 PRK05650 short chain dehydroge 76.1 56 0.0012 29.9 12.3 70 2-78 7-85 (270)
300 PRK11014 transcriptional repre 76.0 5 0.00011 34.0 4.8 57 278-335 25-83 (141)
301 PF08123 DOT1: Histone methyla 75.9 16 0.00035 33.3 8.3 102 2-113 51-164 (205)
302 PF09339 HTH_IclR: IclR helix- 75.9 2.9 6.4E-05 29.1 2.8 46 258-309 4-49 (52)
303 cd08242 MDR_like Medium chain 75.8 13 0.00029 34.9 8.1 78 3-101 166-243 (319)
304 PRK11760 putative 23S rRNA C24 75.6 37 0.00079 33.7 11.1 133 2-175 220-355 (357)
305 KOG2912 Predicted DNA methylas 75.3 3 6.6E-05 40.7 3.5 75 3-88 110-191 (419)
306 cd08237 ribitol-5-phosphate_DH 74.9 11 0.00024 36.4 7.5 80 3-103 174-256 (341)
307 cd08286 FDH_like_ADH2 formalde 74.8 22 0.00048 33.9 9.5 88 3-101 177-264 (345)
308 PF05219 DREV: DREV methyltran 74.7 15 0.00032 34.9 7.8 80 2-101 103-186 (265)
309 PRK11920 rirA iron-responsive 74.4 6 0.00013 34.3 4.9 57 279-336 25-83 (153)
310 cd08263 Zn_ADH10 Alcohol dehyd 73.6 24 0.00052 34.1 9.5 89 3-102 198-286 (367)
311 PF09862 DUF2089: Protein of u 73.2 4.6 9.9E-05 33.5 3.6 40 191-242 1-46 (113)
312 cd08238 sorbose_phosphate_red 73.0 28 0.0006 34.6 10.0 89 4-101 188-286 (410)
313 cd08243 quinone_oxidoreductase 72.7 32 0.0007 31.8 9.9 84 3-102 154-237 (320)
314 TIGR02605 CxxC_CxxC_SSSS putat 72.7 5.1 0.00011 27.9 3.4 28 187-214 4-34 (52)
315 cd08283 FDH_like_1 Glutathione 72.4 24 0.00051 34.7 9.2 89 5-103 197-306 (386)
316 COG1189 Predicted rRNA methyla 72.3 7.7 0.00017 36.4 5.3 131 2-157 88-222 (245)
317 cd08256 Zn_ADH2 Alcohol dehydr 72.1 23 0.00051 33.9 9.0 87 3-101 185-272 (350)
318 cd05280 MDR_yhdh_yhfp Yhdh and 72.1 28 0.0006 32.5 9.3 83 4-102 159-242 (325)
319 COG3947 Response regulator con 71.8 15 0.00032 35.7 7.1 77 19-105 2-82 (361)
320 PRK07097 gluconate 5-dehydroge 71.4 82 0.0018 28.7 12.4 70 2-78 17-95 (265)
321 cd05288 PGDH Prostaglandin deh 71.4 19 0.00042 33.8 8.1 85 4-101 158-242 (329)
322 cd08292 ETR_like_2 2-enoyl thi 71.2 23 0.0005 33.1 8.5 87 4-103 152-238 (324)
323 PRK07102 short chain dehydroge 71.0 56 0.0012 29.3 10.8 68 2-78 8-84 (243)
324 COG3392 Adenine-specific DNA m 71.0 2.2 4.8E-05 40.6 1.4 86 50-161 188-279 (330)
325 PF03484 B5: tRNA synthetase B 71.0 8.2 0.00018 28.8 4.3 56 277-333 4-66 (70)
326 PRK10611 chemotaxis methyltran 71.0 5.4 0.00012 38.3 4.1 85 18-106 148-265 (287)
327 PTZ00357 methyltransferase; Pr 70.8 8.1 0.00018 41.6 5.6 92 7-99 717-831 (1072)
328 cd08287 FDH_like_ADH3 formalde 70.7 34 0.00075 32.5 9.7 91 3-104 179-269 (345)
329 COG0030 KsgA Dimethyladenosine 70.5 18 0.00038 34.4 7.4 78 2-91 39-117 (259)
330 cd08282 PFDH_like Pseudomonas 70.5 31 0.00068 33.6 9.6 88 3-102 187-284 (375)
331 COG0286 HsdM Type I restrictio 70.3 24 0.00052 36.5 9.0 75 2-80 195-275 (489)
332 cd05285 sorbitol_DH Sorbitol d 70.2 28 0.00062 33.2 9.1 87 3-101 173-263 (343)
333 cd08234 threonine_DH_like L-th 69.9 28 0.00061 32.8 8.9 88 3-103 170-257 (334)
334 PRK06124 gluconate 5-dehydroge 69.9 85 0.0018 28.3 14.2 69 2-77 18-95 (256)
335 PF01325 Fe_dep_repress: Iron 69.9 3.9 8.4E-05 29.8 2.3 48 259-309 6-53 (60)
336 PF05891 Methyltransf_PK: AdoM 69.8 5.2 0.00011 36.9 3.6 90 3-102 65-160 (218)
337 PRK07454 short chain dehydroge 69.5 83 0.0018 28.1 12.7 70 2-78 13-91 (241)
338 PRK10458 DNA cytosine methylas 69.2 6.2 0.00013 40.6 4.4 36 1-37 95-130 (467)
339 PRK10857 DNA-binding transcrip 69.2 8.8 0.00019 33.7 4.8 56 279-335 26-83 (164)
340 cd08289 MDR_yhfp_like Yhfp put 69.0 39 0.00084 31.7 9.6 85 4-103 159-243 (326)
341 PF00398 RrnaAD: Ribosomal RNA 69.0 4.6 0.0001 37.9 3.2 80 2-91 39-119 (262)
342 PRK10083 putative oxidoreducta 68.9 29 0.00063 32.9 8.8 88 3-103 171-259 (339)
343 TIGR02010 IscR iron-sulfur clu 68.7 11 0.00023 31.7 5.1 56 279-335 26-83 (135)
344 PF00891 Methyltransf_2: O-met 68.6 4.9 0.00011 36.8 3.2 84 2-104 109-200 (241)
345 cd08262 Zn_ADH8 Alcohol dehydr 68.5 39 0.00084 32.1 9.6 88 3-101 172-262 (341)
346 PRK07523 gluconate 5-dehydroge 68.0 93 0.002 28.1 12.8 70 2-78 17-95 (255)
347 PF09723 Zn-ribbon_8: Zinc rib 68.0 4.8 0.0001 27.1 2.2 28 187-214 4-34 (42)
348 cd08296 CAD_like Cinnamyl alco 67.9 33 0.00071 32.6 8.9 84 3-101 174-257 (333)
349 PF08220 HTH_DeoR: DeoR-like h 67.8 11 0.00025 26.8 4.4 47 259-313 2-48 (57)
350 COG1959 Predicted transcriptio 67.7 11 0.00023 32.7 4.9 57 279-336 26-84 (150)
351 PF01795 Methyltransf_5: MraW 67.4 7.6 0.00016 37.8 4.3 79 3-89 30-111 (310)
352 cd00090 HTH_ARSR Arsenical Res 67.3 13 0.00029 26.4 4.8 56 279-335 21-76 (78)
353 PRK05876 short chain dehydroge 66.5 95 0.0021 28.8 11.6 70 2-78 13-91 (275)
354 cd05284 arabinose_DH_like D-ar 66.5 43 0.00092 31.7 9.4 89 3-103 178-266 (340)
355 PRK09422 ethanol-active dehydr 66.4 40 0.00086 31.9 9.1 85 3-102 173-260 (338)
356 PRK07791 short chain dehydroge 66.3 88 0.0019 29.2 11.4 22 134-155 175-196 (286)
357 PRK07063 short chain dehydroge 66.2 1E+02 0.0022 27.9 12.3 71 2-77 14-93 (260)
358 PRK05599 hypothetical protein; 65.4 1.1E+02 0.0023 27.8 13.6 71 2-78 7-85 (246)
359 PRK06139 short chain dehydroge 65.3 81 0.0017 30.5 11.1 70 2-78 14-92 (330)
360 TIGR00122 birA_repr_reg BirA b 64.8 13 0.00027 27.3 4.2 46 279-327 14-59 (69)
361 KOG1709 Guanidinoacetate methy 64.7 26 0.00056 32.7 6.9 80 14-101 121-204 (271)
362 PRK05855 short chain dehydroge 64.6 85 0.0018 31.9 11.8 70 2-78 322-400 (582)
363 PRK09291 short chain dehydroge 64.3 98 0.0021 27.8 11.0 70 2-78 9-81 (257)
364 smart00874 B5 tRNA synthetase 64.0 27 0.00058 25.6 5.9 34 277-311 4-37 (71)
365 cd05188 MDR Medium chain reduc 63.5 61 0.0013 28.9 9.4 87 4-103 146-232 (271)
366 cd08279 Zn_ADH_class_III Class 63.0 46 0.001 32.2 9.0 89 3-102 193-281 (363)
367 PRK12743 oxidoreductase; Provi 62.9 1.2E+02 0.0026 27.5 13.0 70 2-78 9-88 (256)
368 PRK05565 fabG 3-ketoacyl-(acyl 62.9 1.1E+02 0.0024 27.1 12.0 70 2-78 12-91 (247)
369 PRK07576 short chain dehydroge 62.9 1.2E+02 0.0027 27.7 12.0 70 2-78 16-94 (264)
370 PRK08085 gluconate 5-dehydroge 62.8 1.2E+02 0.0026 27.4 12.3 70 2-78 16-94 (254)
371 PRK12429 3-hydroxybutyrate deh 61.9 1.2E+02 0.0026 27.1 11.8 68 2-76 11-87 (258)
372 smart00834 CxxC_CXXC_SSSS Puta 61.7 8.6 0.00019 25.1 2.6 28 187-214 4-34 (41)
373 cd08244 MDR_enoyl_red Possible 61.7 65 0.0014 30.0 9.6 88 3-103 154-241 (324)
374 PRK08267 short chain dehydroge 61.6 1.2E+02 0.0026 27.5 11.1 36 2-38 8-46 (260)
375 COG3129 Predicted SAM-dependen 61.4 6.2 0.00013 37.1 2.3 54 21-78 106-161 (292)
376 PRK08643 acetoin reductase; Va 61.3 1.2E+02 0.0027 27.2 11.5 69 2-77 9-86 (256)
377 COG1321 TroR Mn-dependent tran 60.9 12 0.00025 32.7 3.9 70 258-333 7-77 (154)
378 COG0677 WecC UDP-N-acetyl-D-ma 60.4 85 0.0018 31.9 10.2 89 3-104 16-129 (436)
379 PRK07666 fabG 3-ketoacyl-(acyl 60.3 1.3E+02 0.0027 26.8 12.3 70 2-78 14-92 (239)
380 TIGR00738 rrf2_super rrf2 fami 60.1 18 0.00039 29.8 4.9 57 278-335 25-83 (132)
381 TIGR00518 alaDH alanine dehydr 60.0 68 0.0015 31.8 9.7 88 5-106 179-270 (370)
382 PRK08589 short chain dehydroge 59.9 1.4E+02 0.0031 27.4 11.6 69 2-78 13-90 (272)
383 PLN02586 probable cinnamyl alc 59.3 50 0.0011 32.1 8.5 85 3-103 194-278 (360)
384 PLN02178 cinnamyl-alcohol dehy 59.3 59 0.0013 32.0 9.1 83 3-102 189-272 (375)
385 PF01726 LexA_DNA_bind: LexA D 59.1 11 0.00024 27.9 3.0 35 272-309 22-57 (65)
386 PF01555 N6_N4_Mtase: DNA meth 59.1 11 0.00024 33.3 3.7 33 72-104 2-57 (231)
387 PRK07890 short chain dehydroge 58.8 1.4E+02 0.003 26.8 13.8 70 2-78 12-90 (258)
388 COG4106 Tam Trans-aconitate me 58.8 29 0.00062 32.4 6.1 87 2-104 39-130 (257)
389 PRK06914 short chain dehydroge 58.5 1.4E+02 0.0031 27.2 11.2 72 2-78 10-89 (280)
390 cd08236 sugar_DH NAD(P)-depend 58.5 69 0.0015 30.4 9.2 87 3-101 170-256 (343)
391 PRK06949 short chain dehydroge 58.0 1.4E+02 0.0031 26.8 12.3 70 2-78 16-94 (258)
392 PRK07035 short chain dehydroge 57.9 1.4E+02 0.0031 26.7 12.1 37 2-39 15-54 (252)
393 PRK12939 short chain dehydroge 57.8 1.3E+02 0.0028 26.7 10.5 68 2-76 14-90 (250)
394 KOG1197 Predicted quinone oxid 57.7 1.1E+02 0.0025 29.3 10.0 96 3-112 158-253 (336)
395 PF13412 HTH_24: Winged helix- 57.0 12 0.00027 25.3 2.8 42 259-307 5-46 (48)
396 PRK06079 enoyl-(acyl carrier p 56.9 1.5E+02 0.0033 26.8 11.4 22 134-155 162-183 (252)
397 PF02254 TrkA_N: TrkA-N domain 56.8 31 0.00067 27.4 5.6 62 2-77 4-69 (116)
398 cd08297 CAD3 Cinnamyl alcohol 56.5 83 0.0018 29.8 9.4 87 3-102 177-264 (341)
399 PF10354 DUF2431: Domain of un 56.4 21 0.00046 31.3 4.8 100 3-106 4-128 (166)
400 PRK06194 hypothetical protein; 56.3 1.6E+02 0.0035 27.1 11.1 70 2-78 13-91 (287)
401 PRK08324 short chain dehydroge 56.0 1.8E+02 0.0039 31.2 12.7 36 2-38 429-467 (681)
402 COG0275 Predicted S-adenosylme 56.0 62 0.0014 31.5 8.2 79 3-88 33-113 (314)
403 PF08279 HTH_11: HTH domain; 55.6 23 0.0005 24.5 4.1 45 259-309 2-46 (55)
404 COG1400 SEC65 Signal recogniti 55.4 9.4 0.0002 30.6 2.1 27 284-310 23-49 (93)
405 cd08235 iditol_2_DH_like L-idi 55.3 88 0.0019 29.6 9.4 87 3-101 176-263 (343)
406 PLN02780 ketoreductase/ oxidor 55.1 2E+02 0.0043 27.6 11.9 37 2-39 60-99 (320)
407 cd08274 MDR9 Medium chain dehy 54.7 64 0.0014 30.6 8.3 82 3-101 189-271 (350)
408 smart00419 HTH_CRP helix_turn_ 54.2 9.5 0.00021 25.3 1.8 32 278-309 8-39 (48)
409 PRK05867 short chain dehydroge 54.2 1.7E+02 0.0036 26.4 12.6 70 2-78 16-94 (253)
410 PTZ00354 alcohol dehydrogenase 54.0 89 0.0019 29.1 9.1 86 3-101 152-238 (334)
411 KOG0022 Alcohol dehydrogenase, 53.6 16 0.00035 35.9 3.8 33 3-35 203-235 (375)
412 smart00346 HTH_ICLR helix_turn 53.4 19 0.00041 27.4 3.6 48 258-311 6-53 (91)
413 PRK06947 glucose-1-dehydrogena 53.3 1.7E+02 0.0036 26.1 11.1 69 2-76 9-86 (248)
414 PF10237 N6-adenineMlase: Prob 53.3 8.5 0.00018 33.9 1.8 35 68-104 84-123 (162)
415 cd05286 QOR2 Quinone oxidoredu 52.7 87 0.0019 28.5 8.7 84 4-101 149-233 (320)
416 TIGR00561 pntA NAD(P) transhyd 52.6 78 0.0017 33.1 8.9 101 4-106 175-287 (511)
417 PRK07904 short chain dehydroge 52.5 1.8E+02 0.004 26.4 11.7 70 2-77 15-94 (253)
418 PF01728 FtsJ: FtsJ-like methy 52.5 11 0.00023 33.0 2.3 83 2-101 32-137 (181)
419 cd08269 Zn_ADH9 Alcohol dehydr 52.5 94 0.002 28.7 8.9 87 3-101 140-227 (312)
420 smart00420 HTH_DEOR helix_turn 52.4 18 0.0004 24.1 3.1 31 279-309 15-45 (53)
421 TIGR02817 adh_fam_1 zinc-bindi 52.4 1.1E+02 0.0023 28.8 9.4 85 3-101 160-245 (336)
422 PRK06484 short chain dehydroge 52.4 2.7E+02 0.0058 28.3 13.0 34 2-36 276-312 (520)
423 PF03269 DUF268: Caenorhabditi 52.3 42 0.00092 29.8 5.9 13 15-27 22-34 (177)
424 COG1724 Predicted RNA binding 52.1 42 0.00092 25.1 5.0 45 291-335 5-63 (66)
425 cd05281 TDH Threonine dehydrog 52.0 1E+02 0.0022 29.3 9.2 89 3-103 174-262 (341)
426 PLN02514 cinnamyl-alcohol dehy 51.8 86 0.0019 30.4 8.8 84 3-102 191-274 (357)
427 KOG4300 Predicted methyltransf 51.8 71 0.0015 29.7 7.4 80 17-104 99-183 (252)
428 PRK10754 quinone oxidoreductas 51.8 92 0.002 29.2 8.8 88 3-103 152-239 (327)
429 PRK08945 putative oxoacyl-(acy 51.5 71 0.0015 28.7 7.7 38 2-40 19-59 (247)
430 PRK06125 short chain dehydroge 51.5 1.9E+02 0.004 26.2 11.7 36 2-38 14-52 (259)
431 PRK08340 glucose-1-dehydrogena 51.4 1.9E+02 0.0041 26.2 12.6 69 2-78 7-84 (259)
432 cd08260 Zn_ADH6 Alcohol dehydr 51.1 1E+02 0.0022 29.2 9.1 86 3-101 176-262 (345)
433 PF13730 HTH_36: Helix-turn-he 51.1 11 0.00024 26.2 1.8 31 277-307 24-54 (55)
434 PRK07889 enoyl-(acyl carrier p 51.0 1.6E+02 0.0035 26.8 10.2 19 134-152 163-181 (256)
435 PF09286 Pro-kuma_activ: Pro-k 51.0 21 0.00046 30.1 3.9 57 277-333 46-102 (143)
436 PF07942 N2227: N2227-like pro 51.0 89 0.0019 29.8 8.4 133 2-155 65-238 (270)
437 PF12802 MarR_2: MarR family; 50.7 9.5 0.00021 26.9 1.4 33 279-311 22-54 (62)
438 PRK06500 short chain dehydroge 50.6 1.8E+02 0.0039 25.8 12.3 33 2-35 13-48 (249)
439 PF03721 UDPG_MGDP_dh_N: UDP-g 50.5 30 0.00065 30.8 4.9 32 3-35 7-41 (185)
440 cd07377 WHTH_GntR Winged helix 50.4 12 0.00025 26.5 1.8 31 278-308 25-55 (66)
441 cd08261 Zn_ADH7 Alcohol dehydr 50.2 95 0.0021 29.3 8.7 87 3-101 170-256 (337)
442 PF03537 Glyco_hydro_114: Glyc 50.0 17 0.00036 27.6 2.7 30 69-102 25-54 (74)
443 PRK05872 short chain dehydroge 49.6 2.2E+02 0.0049 26.6 12.4 35 2-37 16-53 (296)
444 PF11899 DUF3419: Protein of u 49.0 21 0.00045 35.8 4.0 33 2-35 43-75 (380)
445 cd08252 AL_MDR Arginate lyase 48.9 1.2E+02 0.0025 28.5 9.0 85 4-101 162-246 (336)
446 TIGR02944 suf_reg_Xantho FeS a 48.8 23 0.00049 29.4 3.6 56 278-334 25-82 (130)
447 cd08266 Zn_ADH_like1 Alcohol d 48.7 1.5E+02 0.0032 27.4 9.7 89 3-104 178-266 (342)
448 PF09012 FeoC: FeoC like trans 48.4 10 0.00022 28.1 1.3 38 279-316 15-52 (69)
449 PRK07024 short chain dehydroge 48.0 2.1E+02 0.0046 25.8 11.3 34 2-36 9-45 (257)
450 PRK07478 short chain dehydroge 47.8 2.1E+02 0.0045 25.7 13.4 70 2-78 13-91 (254)
451 cd08241 QOR1 Quinone oxidoredu 47.8 1.3E+02 0.0029 27.4 9.1 85 4-101 152-236 (323)
452 PRK05993 short chain dehydroge 47.7 1.9E+02 0.0042 26.6 10.2 32 2-34 11-45 (277)
453 cd08290 ETR 2-enoyl thioester 47.4 1.1E+02 0.0023 29.0 8.5 87 3-103 158-251 (341)
454 cd08246 crotonyl_coA_red croto 47.4 1.3E+02 0.0029 29.2 9.5 91 3-102 205-314 (393)
455 PRK07792 fabG 3-ketoacyl-(acyl 47.1 2.5E+02 0.0055 26.4 11.9 68 2-77 19-96 (306)
456 PF01269 Fibrillarin: Fibrilla 46.9 33 0.00071 31.9 4.6 76 18-101 99-176 (229)
457 smart00418 HTH_ARSR helix_turn 46.7 31 0.00068 23.6 3.7 35 279-313 11-45 (66)
458 smart00345 HTH_GNTR helix_turn 46.6 15 0.00032 25.4 1.8 29 280-308 22-50 (60)
459 PRK06181 short chain dehydroge 46.6 2.2E+02 0.0048 25.6 13.7 70 2-78 8-86 (263)
460 KOG2793 Putative N2,N2-dimethy 46.2 77 0.0017 29.9 7.0 96 2-104 95-199 (248)
461 PRK08277 D-mannonate oxidoredu 46.0 2.4E+02 0.0051 25.8 13.7 69 2-77 17-94 (278)
462 PRK03902 manganese transport t 46.0 29 0.00063 29.2 3.9 31 279-309 23-53 (142)
463 PRK07825 short chain dehydroge 46.0 1.6E+02 0.0035 26.8 9.3 35 2-37 12-49 (273)
464 cd05282 ETR_like 2-enoyl thioe 45.7 1.6E+02 0.0034 27.3 9.3 85 4-101 151-235 (323)
465 COG4098 comFA Superfamily II D 45.7 83 0.0018 31.5 7.3 113 7-128 135-272 (441)
466 PF14056 DUF4250: Domain of un 45.6 27 0.00059 25.2 3.0 42 262-310 8-49 (55)
467 PRK07062 short chain dehydroge 44.8 2.4E+02 0.0052 25.5 13.2 36 2-38 15-53 (265)
468 COG0771 MurD UDP-N-acetylmuram 44.7 65 0.0014 33.0 6.8 91 1-106 15-120 (448)
469 smart00829 PKS_ER Enoylreducta 44.0 1.7E+02 0.0036 26.1 9.0 87 4-101 117-203 (288)
470 PF01047 MarR: MarR family; I 43.8 23 0.0005 24.7 2.5 35 279-313 18-52 (59)
471 PRK08993 2-deoxy-D-gluconate 3 43.7 2.5E+02 0.0053 25.3 10.9 68 2-78 17-93 (253)
472 PRK07775 short chain dehydroge 43.6 2.6E+02 0.0057 25.6 11.0 36 2-38 17-55 (274)
473 PRK09242 tropinone reductase; 43.5 2.5E+02 0.0053 25.3 13.5 72 2-78 16-96 (257)
474 PRK07201 short chain dehydroge 43.2 4.1E+02 0.0089 27.8 13.1 70 2-78 378-456 (657)
475 PF08002 DUF1697: Protein of u 43.1 73 0.0016 27.0 5.9 46 291-336 17-64 (137)
476 PF07015 VirC1: VirC1 protein; 42.7 93 0.002 29.1 6.9 73 15-92 29-105 (231)
477 TIGR02823 oxido_YhdH putative 42.4 1.7E+02 0.0036 27.3 9.0 83 3-101 157-239 (323)
478 cd05276 p53_inducible_oxidored 42.3 1.9E+02 0.0042 26.2 9.2 86 4-102 152-237 (323)
479 PRK12937 short chain dehydroge 42.3 2.4E+02 0.0053 24.9 13.1 70 2-78 12-91 (245)
480 PRK11524 putative methyltransf 42.2 41 0.00089 31.9 4.7 36 1-38 216-251 (284)
481 PRK08703 short chain dehydroge 42.1 2.5E+02 0.0054 24.9 11.6 37 2-39 13-52 (239)
482 COG0745 OmpR Response regulato 41.9 84 0.0018 29.0 6.6 50 19-78 2-51 (229)
483 PRK07677 short chain dehydroge 41.7 2.6E+02 0.0057 25.1 10.9 69 2-77 8-85 (252)
484 PF03444 HrcA_DNA-bdg: Winged 41.7 37 0.00081 26.3 3.5 64 259-325 6-70 (78)
485 PRK07074 short chain dehydroge 41.7 2.6E+02 0.0057 25.1 12.1 68 2-78 9-85 (257)
486 cd08253 zeta_crystallin Zeta-c 41.5 2.2E+02 0.0047 26.0 9.5 87 4-103 157-243 (325)
487 PRK08936 glucose-1-dehydrogena 41.2 2.7E+02 0.0059 25.1 11.7 70 2-78 14-93 (261)
488 cd08270 MDR4 Medium chain dehy 41.2 1.7E+02 0.0037 26.8 8.8 79 3-103 144-222 (305)
489 TIGR03499 FlhF flagellar biosy 41.1 77 0.0017 30.1 6.4 63 7-79 214-281 (282)
490 PRK03369 murD UDP-N-acetylmura 40.9 3.1E+02 0.0068 28.1 11.3 28 2-30 21-48 (488)
491 PRK11064 wecC UDP-N-acetyl-D-m 40.9 1.3E+02 0.0028 30.3 8.2 31 3-34 10-43 (415)
492 PRK08177 short chain dehydroge 40.8 2.3E+02 0.005 25.0 9.2 31 2-33 8-41 (225)
493 PRK08264 short chain dehydroge 40.7 2.6E+02 0.0056 24.7 10.3 30 2-31 13-45 (238)
494 PRK15090 DNA-binding transcrip 40.3 34 0.00074 31.8 3.8 45 258-309 15-59 (257)
495 PRK05703 flhF flagellar biosyn 40.2 2.1E+02 0.0046 29.0 9.7 67 7-81 241-310 (424)
496 cd08264 Zn_ADH_like2 Alcohol d 40.1 1.6E+02 0.0034 27.6 8.4 32 69-103 222-253 (325)
497 PRK00398 rpoP DNA-directed RNA 40.0 27 0.00058 23.7 2.3 27 187-214 2-29 (46)
498 TIGR02632 RhaD_aldol-ADH rhamn 40.0 3.9E+02 0.0084 28.7 12.2 36 2-38 421-459 (676)
499 TIGR03439 methyl_EasF probable 39.7 3.7E+02 0.008 26.2 12.4 97 19-124 106-213 (319)
500 PRK06266 transcription initiat 39.6 43 0.00093 29.8 4.1 46 189-247 118-164 (178)
No 1
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.9e-95 Score=694.72 Aligned_cols=316 Identities=33% Similarity=0.523 Sum_probs=287.5
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
|||||+||||||.|.+..+|++||+||+|+++|++|+++|.. .+..+++.|||.+|++.. ..||+|||||||
T Consensus 60 lsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~-----~~~~v~n~DAN~lm~~~~---~~fd~IDiDPFG 131 (380)
T COG1867 60 LSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSG-----EDAEVINKDANALLHELH---RAFDVIDIDPFG 131 (380)
T ss_pred ccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCc-----ccceeecchHHHHHHhcC---CCccEEecCCCC
Confidence 799999999999998887999999999999999999999944 356677899999999753 589999999999
Q ss_pred CCHHHHHHHHHhcccCCEEEEEecCCCCCCCCCchhHHhhhccccCCCCCchhhhHHHHHHHHHHHHHhcCCcEEEEEec
Q 019408 81 SDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSY 160 (341)
Q Consensus 81 sp~~fld~al~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~~~~~~E~~lR~ll~~i~~~Aa~~~~~i~Pl~s~ 160 (341)
||+||+|+|++++++||+|+|||||+++|||.+|++|+||||+.|++++++||+|+|+|+++++|.||+|+++|+||+|+
T Consensus 132 SPaPFlDaA~~s~~~~G~l~vTATD~a~L~G~~p~~c~rkY~a~~~~~~~~hE~glR~Lig~vaR~AAkyd~~i~Plls~ 211 (380)
T COG1867 132 SPAPFLDAALRSVRRGGLLCVTATDTAPLCGSYPRKCRRKYGAVPLKTEFCHEVGLRILIGYVARTAAKYDKAIEPLLSL 211 (380)
T ss_pred CCchHHHHHHHHhhcCCEEEEEecccccccCCChHHHHHHhccccCCCcchhHHHHHHHHHHHHHHHHhhcccceeEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEEEEEEEEeCccc---ccccceeEEEcCCCCCcccccccccCCCCCC-CCCCCCCCcceeeccccccCCCCHH
Q 019408 161 YSYHGPVFRVMLRVHRKALP---DNRHYGFISYCNHCGNSQAYSWEELGQMSCP-CSNTIGSSSLVVSGPLWTGPLHDAT 236 (341)
Q Consensus 161 ~~~~dhy~Rv~vrv~~~~~~---~~~~~g~v~~C~~C~~~~~~~~~~~~~~~C~-c~~~~~~~~~~~~GPlW~G~lhd~~ 236 (341)
+ .||||||||+|.+|+.+ +.+++||++||..|| +..........+|+ |++ .++++||+|+|||||++
T Consensus 212 ~--~dhY~Rvfv~v~rga~~ad~~~e~~g~~~~c~~cg--~~~~~~~~~~~~c~~Cg~-----~~~~~GPlW~GpL~d~~ 282 (380)
T COG1867 212 S--IDHYVRVFVEVRRGARRADKLLENLGYIYHCSRCG--EIVGSFREVDEKCPHCGG-----KVHLAGPLWLGPLHDEE 282 (380)
T ss_pred e--eceEEEEEEEEccCchhHHHHHHhcCcEEEccccc--ceecccccccccCCcccc-----cceeccCcccCcccCHH
Confidence 9 99999999999999887 578999999999999 22221222336795 555 89999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCChhhHHHHHHHhhcccCCCCCCcceehhHHHhhcCCCCCCHHHHHHHHHHCCCEEeeeecCC
Q 019408 237 HITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNSPSLKTMMSAVQKEGYVASRSHIAS 316 (341)
Q Consensus 237 fv~~~l~~~~~~~~~~~~~~~~~~~ll~~~~~e~~~~~pp~yy~~~~l~~~~k~~~p~~~~~~~~L~~~Gy~as~tH~~~ 316 (341)
|+++|++.+++... ++.+++.++|+.+.+| .+.+|+||++|+|||++|.+.||+++++++|+++||+||||||+|
T Consensus 283 f~e~~l~~~~~~~l---~~~~~~~klL~~i~~E--~~~~p~fydl~~ias~l~~s~p~~~~vv~~L~~~G~~asrTHf~p 357 (380)
T COG1867 283 FIEEMLEIAEGLEL---GTKKRALKLLKLIKKE--LDISPLFYDLHRIASKLGLSAPPLEEVVEALRSAGYEASRTHFSP 357 (380)
T ss_pred HHHHHHHHhhcccc---ccHHHHHHHHHHHHhh--cCCCceEEEHHHHHHHhCCCCCCHHHHHHHHHhcCceeeeeccCC
Confidence 99999998876522 3456799999999977 445579999999999999999999999999999999999999999
Q ss_pred CceecCCCHHHHHHHHHhhhhh
Q 019408 317 NAIKTNCPMVACIRIAKELQGC 338 (341)
Q Consensus 317 ~~iKTdAp~~~i~~i~~~~~~~ 338 (341)
+|||||||+++|+++|+++.+-
T Consensus 358 ~giKTda~~~ev~~vl~~~~~~ 379 (380)
T COG1867 358 TGIKTDAPYEEVEKVLKSLKKD 379 (380)
T ss_pred cccccCCCHHHHHHHHHHhhcC
Confidence 9999999999999999998753
No 2
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=100.00 E-value=1.2e-95 Score=716.08 Aligned_cols=316 Identities=38% Similarity=0.598 Sum_probs=261.2
Q ss_pred CccccHhHHHHhhh-CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCC
Q 019408 1 MCGCGIRSLRYLAE-AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSF 79 (341)
Q Consensus 1 fagsG~rgir~a~e-~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPy 79 (341)
|||||+|||||++| .|+.+|++||+|++|+++|++|+++|+++ .+++++.++||+.+|. ..+++||+||||||
T Consensus 57 laasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~---~~~~~v~~~DAn~ll~---~~~~~fD~IDlDPf 130 (377)
T PF02005_consen 57 LAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLE---DERIEVSNMDANVLLY---SRQERFDVIDLDPF 130 (377)
T ss_dssp T-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-S---GCCEEEEES-HHHHHC---HSTT-EEEEEE--S
T ss_pred cccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhcccc---CceEEEehhhHHHHhh---hccccCCEEEeCCC
Confidence 79999999999999 88999999999999999999999999995 1268999999999996 23578999999999
Q ss_pred CCCHHHHHHHHHhcccCCEEEEEecCCCCCCCCCchhHHhhhccccCCCCCchhhhHHHHHHHHHHHHHhcCCcEEEEEe
Q 019408 80 GSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFS 159 (341)
Q Consensus 80 gsp~~fld~al~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~~~~~~E~~lR~ll~~i~~~Aa~~~~~i~Pl~s 159 (341)
|||+||+|+|++++++||+|+||+||+++|||++|++|+||||+.|.+++|+||+|+|+||+.|+|+|++++++|+||+|
T Consensus 131 GSp~pfldsA~~~v~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~~~~~~~~~~E~glRill~~i~r~Aa~~~~~i~PllS 210 (377)
T PF02005_consen 131 GSPAPFLDSALQAVKDGGLLCVTATDTAVLCGSYPEKCFRKYGAVPRKTPYCHEMGLRILLGAIAREAARYDRGIEPLLS 210 (377)
T ss_dssp S--HHHHHHHHHHEEEEEEEEEEE--HHHHTTSSHHHHHHHHSSB---STTHHHHHHHHHHHHHHHHHHTTTEEEEEEEE
T ss_pred CCccHhHHHHHHHhhcCCEEEEeccccccccCCChhHHHHhcCCcccCCCcccHHHHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCeEEEEEEEEeCccc---ccccceeEEEcCCCCCcccccccccCCCCC-CCCCCCCCCcceeeccccccCCCCH
Q 019408 160 YYSYHGPVFRVMLRVHRKALP---DNRHYGFISYCNHCGNSQAYSWEELGQMSC-PCSNTIGSSSLVVSGPLWTGPLHDA 235 (341)
Q Consensus 160 ~~~~~dhy~Rv~vrv~~~~~~---~~~~~g~v~~C~~C~~~~~~~~~~~~~~~C-~c~~~~~~~~~~~~GPlW~G~lhd~ 235 (341)
++ .|||+||||||.+|+.+ ..+++||++||++|+++............| .|++ +++++||||+|||||+
T Consensus 211 ~~--~~hy~Rv~v~v~~~~~~a~~~~~~~G~v~~C~~C~~~~~~~~~~~~~~~c~~cg~-----~~~~~GPlWlGpL~d~ 283 (377)
T PF02005_consen 211 FS--IDHYVRVFVRVKRGASRADESLEKLGYVYYCPSCGYREEVKGLQKLKSKCPECGS-----KLHISGPLWLGPLHDK 283 (377)
T ss_dssp EE--ETTEEEEEEEEEESHHHHHHHHTTEEEEEEETTT--EECCT-GCC--CEETTT-S-----CCCEEEEEE-S-SB-H
T ss_pred eE--eCcEEEEEEEEecCHHHHHHHHHheeEEEECCCccccccccCccccCCcCCCCCC-----ccceecCccccccCCH
Confidence 99 99999999999999776 467899999999998765432221111456 5766 8999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCChhhHHHHHHHhhcccCCCCCCcceehhHHHhhcCCCCCCHHHHHHHHHHCCCEEeeeecC
Q 019408 236 THITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNSPSLKTMMSAVQKEGYVASRSHIA 315 (341)
Q Consensus 236 ~fv~~~l~~~~~~~~~~~~~~~~~~~ll~~~~~e~~~~~pp~yy~~~~l~~~~k~~~p~~~~~~~~L~~~Gy~as~tH~~ 315 (341)
+||++|++.+++.... ....++.++|+.+.+|. ..||+||++++||+.+|+++||+++++++|+++||+||||||+
T Consensus 284 ~fl~~ml~~~~~~~~~--~~~~ri~~lL~~i~eE~--~~~P~yY~l~~ias~lk~~~P~~~~ii~aL~~~Gy~aSrTH~~ 359 (377)
T PF02005_consen 284 EFLEKMLEEAEEMPEL--NTSKRIEKLLETIKEEL--IDPPFYYDLHEIASRLKCNPPPLDKIISALRNAGYRASRTHFD 359 (377)
T ss_dssp HHHHHHHHHHCT-S-T--TTHHHHHHHHHHHHHCH--S-SSS-EEHHHHHHHHT-SC--HHHHHHHHHHTTTTEEEETTC
T ss_pred HHHHHHHhhhhccchh--hhHHHHhhhcchhhhhc--ccceeEEeHHHHHHhcCCCCCCHHHHHHHHhhcceEEEecccC
Confidence 9999999999875432 23567999999999874 4578999999999999999999999999999999999999999
Q ss_pred CCceecCCCHHHHHHHHH
Q 019408 316 SNAIKTNCPMVACIRIAK 333 (341)
Q Consensus 316 ~~~iKTdAp~~~i~~i~~ 333 (341)
|+|||||||+++||||||
T Consensus 360 p~giKTdAP~~~i~dilR 377 (377)
T PF02005_consen 360 PNGIKTDAPIEEIWDILR 377 (377)
T ss_dssp CCEEEESS-HHHHHHHH-
T ss_pred CCcEecCCCHHHHHHHhC
Confidence 999999999999999997
No 3
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=100.00 E-value=7.6e-91 Score=681.62 Aligned_cols=316 Identities=30% Similarity=0.448 Sum_probs=290.4
Q ss_pred CccccHhHHHHhhh-CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCC
Q 019408 1 MCGCGIRSLRYLAE-AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSF 79 (341)
Q Consensus 1 fagsG~rgir~a~e-~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPy 79 (341)
|||||+|||||++| .|+++|++||+|++|++.|++|+++|+++ +++++++||+++|... +.+||+||+|||
T Consensus 52 faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-----~~~v~~~Da~~~l~~~---~~~fDvIdlDPf 123 (374)
T TIGR00308 52 LSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-----NIEVPNEDAANVLRYR---NRKFHVIDIDPF 123 (374)
T ss_pred CCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-----cEEEEchhHHHHHHHh---CCCCCEEEeCCC
Confidence 89999999999998 48999999999999999999999999873 6789999999999764 357999999999
Q ss_pred CCCHHHHHHHHHhcccCCEEEEEecCCCCCCCCCchhHHhhhccccCCCCCchhhhHHHHHHHHHHHHHhcCCcEEEEEe
Q 019408 80 GSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFS 159 (341)
Q Consensus 80 gsp~~fld~al~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~~~~~~E~~lR~ll~~i~~~Aa~~~~~i~Pl~s 159 (341)
|+|++|+++|++++++||+|+|||||+++|||++|++|+||||+.|++++|+||+|+|+||+.|+|+|++|+++|+||+|
T Consensus 124 Gs~~~fld~al~~~~~~glL~vTaTD~~~L~G~~~~~~~rkYga~~~~~~~~~E~glRiLlg~i~r~Aa~~~~~i~Pl~S 203 (374)
T TIGR00308 124 GTPAPFVDSAIQASAERGLLLVTATDTSALCGNYPKSCLRKYGANPVKTESCHESALRLLLGFVKRTAAKYEKALEPLLS 203 (374)
T ss_pred CCcHHHHHHHHHhcccCCEEEEEecccHHhcCCChHHHHHHhCCcccCCcchHHHHHHHHHHHHHHHHHHcCCceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCeEEEEEEEEeCccc---ccccceeEEEcCCCCCcccccccccCCCCC-CCCCCCCCCcceeeccccccCCCCH
Q 019408 160 YYSYHGPVFRVMLRVHRKALP---DNRHYGFISYCNHCGNSQAYSWEELGQMSC-PCSNTIGSSSLVVSGPLWTGPLHDA 235 (341)
Q Consensus 160 ~~~~~dhy~Rv~vrv~~~~~~---~~~~~g~v~~C~~C~~~~~~~~~~~~~~~C-~c~~~~~~~~~~~~GPlW~G~lhd~ 235 (341)
++ .|||+||||||.+|+.+ ..+++||++||++|+++...+........| +|++ +++++||||+|||||+
T Consensus 204 ~~--~~~y~Rv~vrv~~~~~~~~~~~~~~g~v~~C~~c~~~~~~~~~~~~~~~C~~c~~-----~~~~~GPlW~G~l~d~ 276 (374)
T TIGR00308 204 HS--IDHYVRVYVKVKRSAIRADKVMESTGYTYHCSRCLHNKPVNGISQRKGRCKECGG-----EYHLAGPLYAGPLHDK 276 (374)
T ss_pred ee--eCcEEEEEEEEecCHHHHHHHHHhceeEEECCCcccccccccccCCCCCCCCCCC-----cceeecCcccCccCCH
Confidence 99 99999999999999765 567899999999998886544322333568 4665 8999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCChhhHHHHHHHhhcccCCCCCCcceehhHHHhhcCCCCCCHHHHHHHHHHCCCEEeeeecC
Q 019408 236 THITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNSPSLKTMMSAVQKEGYVASRSHIA 315 (341)
Q Consensus 236 ~fv~~~l~~~~~~~~~~~~~~~~~~~ll~~~~~e~~~~~pp~yy~~~~l~~~~k~~~p~~~~~~~~L~~~Gy~as~tH~~ 315 (341)
+||++|++.++...|. +..++.++|+.+.+| .+.||+||++++||+++|+++||++.++++|+++||+||||||+
T Consensus 277 ~fl~~m~~~~~~~~~~---~~~~~~~lL~~~~~E--~~~~p~~y~~~~i~~~~k~~~p~~~~~~~~L~~~Gy~as~tH~~ 351 (374)
T TIGR00308 277 EFIEEVLRIAEEKEYG---TRKRVLKMLSLIKNE--LSDPPGYYSPHHIASVLKLSVPPLKDVVAGLKSLGFEASRTHYQ 351 (374)
T ss_pred HHHHHHHHhhhhcccc---chHHHHHHHHHHHhc--cCCCCeEEeHHHHHHhcCCCCCCHHHHHHHHHHCCCeEEeeeeC
Confidence 9999999998877663 345799999999987 44688999999999999999999999999999999999999999
Q ss_pred CCceecCCCHHHHHHHHHhhh
Q 019408 316 SNAIKTNCPMVACIRIAKELQ 336 (341)
Q Consensus 316 ~~~iKTdAp~~~i~~i~~~~~ 336 (341)
|+|||||||+++||+++++|.
T Consensus 352 p~~iKTdAp~~~i~~i~~~~~ 372 (374)
T TIGR00308 352 PSGIKTDAPWDAIWEVLQKCD 372 (374)
T ss_pred CCcEecCCCHHHHHHHHHhcc
Confidence 999999999999999999986
No 4
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.9e-91 Score=682.95 Aligned_cols=323 Identities=35% Similarity=0.512 Sum_probs=296.9
Q ss_pred CccccHhHHHHhhh-CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCC
Q 019408 1 MCGCGIRSLRYLAE-AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSF 79 (341)
Q Consensus 1 fagsG~rgir~a~e-~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPy 79 (341)
|||||+|+||||+| .|+.+|++||.|+.|++.|++|+++|+++ +.+++.+.||+.+|.+.....++||+||||||
T Consensus 117 lsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~----~ive~~~~DA~~lM~~~~~~~~~FDvIDLDPy 192 (525)
T KOG1253|consen 117 LSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVE----DIVEPHHSDANVLMYEHPMVAKFFDVIDLDPY 192 (525)
T ss_pred hhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCch----hhcccccchHHHHHHhccccccccceEecCCC
Confidence 68999999999999 78899999999999999999999999885 78899999999999987655578999999999
Q ss_pred CCCHHHHHHHHHhcccCCEEEEEecCCCCCCCCCchhHHhhhccccCCCCCchhhhHHHHHHHHHHHHHhcCCcEEEEEe
Q 019408 80 GSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFS 159 (341)
Q Consensus 80 gsp~~fld~al~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~~~~~~E~~lR~ll~~i~~~Aa~~~~~i~Pl~s 159 (341)
|+|++|||+|+|+|++||||+|||||+++|||+.|++|+.+||+.+++++|+||+++|+||+.|.++|++|+|+|+||+|
T Consensus 193 Gs~s~FLDsAvqav~~gGLL~vT~TD~aVL~gn~pe~C~~kYG~~~lr~~~chE~aLRill~~i~~~Aary~r~IePLlS 272 (525)
T KOG1253|consen 193 GSPSPFLDSAVQAVRDGGLLCVTCTDMAVLAGNAPEKCYSKYGASILRMKYCHEMALRILLAAIARAAARYGRYVEPLLS 272 (525)
T ss_pred CCccHHHHHHHHHhhcCCEEEEEecchHhhccCChhhHHHhcCcccccchhhhHHHHHHHHHHHHHHHHHhCCcceeeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCeEEEEEEEEeCccc---ccccceeEEEcCCCCCcccccccccC------------C----CCC-CCCCCCCCC
Q 019408 160 YYSYHGPVFRVMLRVHRKALP---DNRHYGFISYCNHCGNSQAYSWEELG------------Q----MSC-PCSNTIGSS 219 (341)
Q Consensus 160 ~~~~~dhy~Rv~vrv~~~~~~---~~~~~g~v~~C~~C~~~~~~~~~~~~------------~----~~C-~c~~~~~~~ 219 (341)
++ .||||||||||++|+.+ ..++++|++||.+|++++.|++++.. + ..| +|+.
T Consensus 273 is--~DFYVRVFVRV~t~~~~~k~~~~k~~~v~hC~gC~s~~~q~lg~~~~~~~~~~~~~~~gp~v~~~C~hcg~----- 345 (525)
T KOG1253|consen 273 LS--IDFYVRVFVRVYTGPPKVKNTRSKYGLVYHCSGCGSFHLQPLGRTSPNPGSTKFSEAGGPPVPCNCEHCGK----- 345 (525)
T ss_pred EE--eeeEEEEEEEEEccCchhhccccceeEEEEecCcchhhcccccccCCCCccceeccCCCCCCCcccccccc-----
Confidence 99 99999999999999877 45679999999999999999988422 1 235 4555
Q ss_pred cceeeccccccCCCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHhhcccCCCCCCcceehhHHHhhcCCCCCCHHHHH
Q 019408 220 SLVVSGPLWTGPLHDATHITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNSPSLKTMM 299 (341)
Q Consensus 220 ~~~~~GPlW~G~lhd~~fv~~~l~~~~~~~~~~~~~~~~~~~ll~~~~~e~~~~~pp~yy~~~~l~~~~k~~~p~~~~~~ 299 (341)
+++++||||.|||||++||++||+.+++.+.....+.+|+.++|+...|| +.+.|+||++++||+.+|+++||.+.++
T Consensus 346 ~~~l~GP~W~~PlHd~~fv~~mL~~~k~~~~~~~~t~kri~g~L~~~~ee--L~dvp~y~~~~~l~s~lk~~~p~~~~~~ 423 (525)
T KOG1253|consen 346 RLHLGGPMWSGPLHDAEFVTEMLEIAKEVSEDTYGTDKRLSGMLELVDEE--LPDVPLYYSLNQLCSVLKCNSPPLKKFR 423 (525)
T ss_pred cccccCccccCccccHHHHHHHHHHhhcCCccccchhhhheehhhccccc--ccCCccccchhhhhhhhcccCCcHHHHH
Confidence 99999999999999999999999999876544333556788888888876 3334799999999999999999999999
Q ss_pred HHHHHCCCEEeeeecCCCceecCCCHHHHHHHHHhhh
Q 019408 300 SAVQKEGYVASRSHIASNAIKTNCPMVACIRIAKELQ 336 (341)
Q Consensus 300 ~~L~~~Gy~as~tH~~~~~iKTdAp~~~i~~i~~~~~ 336 (341)
+||.++||++|+||..|+|||||||++.||||||.|.
T Consensus 424 sAllnaGyrvS~sH~~~naiKTnAP~s~iwdi~r~~~ 460 (525)
T KOG1253|consen 424 SALLNAGYRVSGSHANPNAIKTNAPMSHIWDILRCWI 460 (525)
T ss_pred HHHHhccceeccccccccccccCCCHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999998
No 5
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=100.00 E-value=1.6e-84 Score=639.53 Aligned_cols=313 Identities=34% Similarity=0.543 Sum_probs=286.9
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
|||||+||||+++|.++.+|++||+|+.|++.+++|+++|+++ .++++++|++.+|.. ..+||+||+||||
T Consensus 65 ~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~-----~~~v~~~Da~~~l~~----~~~fD~V~lDP~G 135 (382)
T PRK04338 65 LSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE-----NEKVFNKDANALLHE----ERKFDVVDIDPFG 135 (382)
T ss_pred CCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-----ceEEEhhhHHHHHhh----cCCCCEEEECCCC
Confidence 7999999999999888889999999999999999999999984 567899999999864 3469999999999
Q ss_pred CCHHHHHHHHHhcccCCEEEEEecCCCCCCCCCchhHHhhhccccCCCCCchhhhHHHHHHHHHHHHHhcCCcEEEEEec
Q 019408 81 SDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSY 160 (341)
Q Consensus 81 sp~~fld~al~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~~~~~~E~~lR~ll~~i~~~Aa~~~~~i~Pl~s~ 160 (341)
++.+|++.|++.+++||+|+||+||+++|||+++.+++++||..|.+++|+||+|||+||+.++|+|++|+++|+||+|+
T Consensus 136 s~~~~l~~al~~~~~~gilyvSAtD~~~L~g~y~~~~~~~yd~fP~~~~~~~E~glRill~~i~r~Aa~~~~~i~Pl~s~ 215 (382)
T PRK04338 136 SPAPFLDSAIRSVKRGGLLCVTATDTAPLCGAYPKSCLRKYGAVPLKTEFYHEMGLRILIGYIAREAAKYDKGLEPLFSH 215 (382)
T ss_pred CcHHHHHHHHHHhcCCCEEEEEecCchhhcCCChHHHHHHhcCcccCCcchhHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEEEEEEEEeCccc---ccccceeEEEcCCCCCcccccccccCCCCCC-CCCCCCCCcceeeccccccCCCCHH
Q 019408 161 YSYHGPVFRVMLRVHRKALP---DNRHYGFISYCNHCGNSQAYSWEELGQMSCP-CSNTIGSSSLVVSGPLWTGPLHDAT 236 (341)
Q Consensus 161 ~~~~dhy~Rv~vrv~~~~~~---~~~~~g~v~~C~~C~~~~~~~~~~~~~~~C~-c~~~~~~~~~~~~GPlW~G~lhd~~ 236 (341)
+ .|||+||||||.+|+.+ ..+++||++||++|++++.+++ . ....|+ |++ +++++||||+|||||++
T Consensus 216 ~--~~~y~Rv~vrv~~~~~~~~~~~~~~g~~~~C~~c~~~~~~~~-~-~~~~C~~c~~-----~~~~~GPlW~G~l~d~~ 286 (382)
T PRK04338 216 S--TDHYYRVFLKVERGAKKADKALENLGYVYYCPKCLYREEVEG-L-PPEECPVCGG-----KFGTAGPLWLGPLHDKE 286 (382)
T ss_pred e--eccEEEEEEEEecCHHHHHHHHHhceeEEECCCCCcEEEecC-C-CCCCCCCCCC-----cceeccccccCccCCHH
Confidence 9 99999999999999765 5678999999999999998765 2 224684 555 89999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCChhhHHHHHHHhhcccCCCCCCcceehhHHHhhcCCCCCCHHHHHHHHHHCCCEEeeeecCC
Q 019408 237 HITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNSPSLKTMMSAVQKEGYVASRSHIAS 316 (341)
Q Consensus 237 fv~~~l~~~~~~~~~~~~~~~~~~~ll~~~~~e~~~~~pp~yy~~~~l~~~~k~~~p~~~~~~~~L~~~Gy~as~tH~~~ 316 (341)
||++|++.++ ..+ ...+++.++|+.+.+|.+++ +|+||++++||+++|+++||++.++++|+++||+||||||+|
T Consensus 287 fl~~~~~~~~-~~~---~~~~~~~~ll~~~~~E~~~~-~p~~y~~~~i~~~~k~~~p~~~~~~~~L~~~Gy~as~tH~~p 361 (382)
T PRK04338 287 FVEEMLEEAA-KEL---GTSKKALKLLKTIEEESKLD-TPTFYDLHELAKKLKVSAPPMDEILEALREAGFEASRTHFSP 361 (382)
T ss_pred HHHHHHHHhh-hhc---cchHHHHHHHHHHHhccCCC-CCcEEcHHHHHhhcCCCCCCHHHHHHHHHHCCCeEEeeEECC
Confidence 9999999885 112 23457999999999885554 579999999999999999999999999999999999999999
Q ss_pred CceecCCCHHHHHHHHHhhh
Q 019408 317 NAIKTNCPMVACIRIAKELQ 336 (341)
Q Consensus 317 ~~iKTdAp~~~i~~i~~~~~ 336 (341)
+|||||||+++||+++++|.
T Consensus 362 ~~iKTdAp~~~i~~i~~~~~ 381 (382)
T PRK04338 362 TGFKTDAPYDEIKEAIKSLS 381 (382)
T ss_pred CcEecCCCHHHHHHHHHHhc
Confidence 99999999999999999986
No 6
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.80 E-value=1.1e-18 Score=171.95 Aligned_cols=138 Identities=17% Similarity=0.058 Sum_probs=122.6
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC--
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-- 78 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-- 78 (341)
||-||.+|+-+|. .||++||.||+|..|+++.++|+++|+++ ..++.++++||+++|++...++++||+|++||
T Consensus 225 FsYTGgfSv~Aa~-gGA~~vt~VD~S~~al~~a~~N~~LNg~~---~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPs 300 (393)
T COG1092 225 FSYTGGFSVHAAL-GGASEVTSVDLSKRALEWARENAELNGLD---GDRHRFIVGDVFKWLRKAERRGEKFDLIILDPPS 300 (393)
T ss_pred cccCcHHHHHHHh-cCCCceEEEeccHHHHHHHHHHHHhcCCC---ccceeeehhhHHHHHHHHHhcCCcccEEEECCcc
Confidence 7899999999999 79999999999999999999999999994 35688999999999999998899999999999
Q ss_pred CCCCH-----------HHHHHHHHhcccCCEEEEEecCCCCCCCCCchhHHhhhccccCCCCCchhhhHHHHHHHHHHHH
Q 019408 79 FGSDS-----------SFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREA 147 (341)
Q Consensus 79 ygsp~-----------~fld~al~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~~~~~~E~~lR~ll~~i~~~A 147 (341)
|+... ..++.++++|++||+|.+ +| |..+ ++...|++.|++++
T Consensus 301 F~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~-~s-----~~~~--------------------~~~~~f~~~i~~a~ 354 (393)
T COG1092 301 FARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVT-SS-----CSRH--------------------FSSDLFLEIIARAA 354 (393)
T ss_pred cccCcccchhHHHHHHHHHHHHHHHcCCCCEEEE-Ee-----cCCc--------------------cCHHHHHHHHHHHH
Confidence 65321 234588899999999996 66 7543 88899999999999
Q ss_pred HhcCCcEEEEEecccCCCCeE
Q 019408 148 SAQGYHVSPLFSYYSYHGPVF 168 (341)
Q Consensus 148 a~~~~~i~Pl~s~~~~~dhy~ 168 (341)
.+.++.++-+-...||.||++
T Consensus 355 ~~~~~~~~~~~~~~~~~D~p~ 375 (393)
T COG1092 355 AAAGRRAQEIEGEGQPPDHPR 375 (393)
T ss_pred HhcCCcEEEeeccCCCCCccc
Confidence 999999999999999999954
No 7
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.76 E-value=1.6e-18 Score=155.15 Aligned_cols=120 Identities=24% Similarity=0.266 Sum_probs=90.1
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
|||||++|||++| +||++|+++|.|+.|++.|++|++..++. +++++++.|++.++.+....+++||+|++|| |
T Consensus 50 FaGSGalGlEALS-RGA~~v~fVE~~~~a~~~i~~N~~~l~~~----~~~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY 124 (183)
T PF03602_consen 50 FAGSGALGLEALS-RGAKSVVFVEKNRKAIKIIKKNLEKLGLE----DKIRVIKGDAFKFLLKLAKKGEKFDIIFLDPPY 124 (183)
T ss_dssp T-TTSHHHHHHHH-TT-SEEEEEES-HHHHHHHHHHHHHHT-G----GGEEEEESSHHHHHHHHHHCTS-EEEEEE--ST
T ss_pred CCccCccHHHHHh-cCCCeEEEEECCHHHHHHHHHHHHHhCCC----cceeeeccCHHHHHHhhcccCCCceEEEECCCc
Confidence 8999999999999 89999999999999999999999999884 5789999999999987766678999999999 8
Q ss_pred CCCHH---HHHHHH--HhcccCCEEEEEecC---CCCCCCCCchhHHhhhcccc
Q 019408 80 GSDSS---FLRTVF--NAVKRDGLLYLTSTD---GYSSGGHRPNNSLASYGAYI 125 (341)
Q Consensus 80 gsp~~---fld~al--~~v~~gGlL~vt~TD---~~~l~g~~~~~~~r~Yg~~~ 125 (341)
..... .++... ..++++|+++++..- .....+.......|+||.+.
T Consensus 125 ~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~~~~~~~~~~~~~~~~r~yG~t~ 178 (183)
T PF03602_consen 125 AKGLYYEELLELLAENNLLNEDGLIIIEHSKKEDLPESPGNWELIKERKYGDTK 178 (183)
T ss_dssp TSCHHHHHHHHHHHHTTSEEEEEEEEEEEETTSSS-SEETTEEEEEEEEETTEE
T ss_pred ccchHHHHHHHHHHHCCCCCCCEEEEEEecCCCCCccCCCCEEEEEEecCCCEE
Confidence 86522 222222 467889999985532 22335666777888999864
No 8
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.73 E-value=9.5e-17 Score=159.42 Aligned_cols=140 Identities=12% Similarity=0.041 Sum_probs=117.7
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
|||||.+||.++. .|+.+|+++|+|+.+++.+++|+++|+++ .++++++++|++++|......+++||+|++|| |
T Consensus 228 fsgtG~~~l~aa~-~ga~~V~~VD~s~~al~~a~~N~~~Ngl~---~~~v~~i~~D~~~~l~~~~~~~~~fDlVilDPP~ 303 (396)
T PRK15128 228 FSYTGGFAVSALM-GGCSQVVSVDTSQEALDIARQNVELNKLD---LSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPK 303 (396)
T ss_pred ccCCCHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCC---CCcEEEEEccHHHHHHHHHhcCCCCCEEEECCCC
Confidence 7999999999887 68889999999999999999999999983 13688999999999977654456899999999 3
Q ss_pred CCCH------------HHHHHHHHhcccCCEEEEEecCCCCCCCCCchhHHhhhccccCCCCCchhhhHHHHHHHHHHHH
Q 019408 80 GSDS------------SFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREA 147 (341)
Q Consensus 80 gsp~------------~fld~al~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~~~~~~E~~lR~ll~~i~~~A 147 (341)
-.+. .++..|+++|++||+|.+ +| |. +.++...|...+.++|
T Consensus 304 f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~-~s-----cs--------------------~~~~~~~f~~~v~~aa 357 (396)
T PRK15128 304 FVENKSQLMGACRGYKDINMLAIQLLNPGGILLT-FS-----CS--------------------GLMTSDLFQKIIADAA 357 (396)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEE-Ee-----CC--------------------CcCCHHHHHHHHHHHH
Confidence 2221 123367899999999996 55 64 3477889999999999
Q ss_pred HhcCCcEEEEEecccCCCCeEEE
Q 019408 148 SAQGYHVSPLFSYYSYHGPVFRV 170 (341)
Q Consensus 148 a~~~~~i~Pl~s~~~~~dhy~Rv 170 (341)
.+.++.++.+-...||.||++..
T Consensus 358 ~~~~~~~~~l~~~~~~~DhP~~~ 380 (396)
T PRK15128 358 IDAGRDVQFIEQFRQAADHPVIA 380 (396)
T ss_pred HHcCCeEEEEEEcCCCCCCCCCC
Confidence 99999999999999999999754
No 9
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.72 E-value=3.5e-17 Score=145.79 Aligned_cols=117 Identities=22% Similarity=0.251 Sum_probs=94.4
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
|||||++|||++| |||++|+++|.|..|+.+|++|++..++. ...+++++||.++|.....+ +.||+|++|| |
T Consensus 51 FAGSGaLGlEAlS-RGA~~~~~vE~~~~a~~~l~~N~~~l~~~----~~~~~~~~da~~~L~~~~~~-~~FDlVflDPPy 124 (187)
T COG0742 51 FAGSGALGLEALS-RGAARVVFVEKDRKAVKILKENLKALGLE----GEARVLRNDALRALKQLGTR-EPFDLVFLDPPY 124 (187)
T ss_pred cCCccHhHHHHHh-CCCceEEEEecCHHHHHHHHHHHHHhCCc----cceEEEeecHHHHHHhcCCC-CcccEEEeCCCC
Confidence 8999999999999 89999999999999999999999998874 57889999999888876432 2599999999 8
Q ss_pred CCCHHHH--HHHH------HhcccCCEEEEEecCCC----CCCCCCchhHHhhhccccC
Q 019408 80 GSDSSFL--RTVF------NAVKRDGLLYLTSTDGY----SSGGHRPNNSLASYGAYIL 126 (341)
Q Consensus 80 gsp~~fl--d~al------~~v~~gGlL~vt~TD~~----~l~g~~~~~~~r~Yg~~~~ 126 (341)
+. .++ ..++ ..|+++|++++ .+|.. .+.........++||.+.+
T Consensus 125 ~~--~l~~~~~~~~~~~~~~~L~~~~~iv~-E~~~~~~~~~~~~~~~~~r~k~yG~t~l 180 (187)
T COG0742 125 AK--GLLDKELALLLLEENGWLKPGALIVV-EHDKDVELPELPANFELHREKKYGQTKL 180 (187)
T ss_pred cc--chhhHHHHHHHHHhcCCcCCCcEEEE-EeCCCcCccccCCCeEEEEEeecCCEEE
Confidence 74 444 3333 34888888887 44433 3567777888899998753
No 10
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.68 E-value=3.2e-16 Score=149.04 Aligned_cols=133 Identities=20% Similarity=0.121 Sum_probs=95.3
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC--
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-- 78 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-- 78 (341)
||-||.+|+-+++ .||.+|+.+|.|..|+++.++|+++|+++ .++++++++|++++|.+.. ++.+||+|++||
T Consensus 131 FsYTGgfsv~Aa~-gGA~~v~~VD~S~~al~~a~~N~~lNg~~---~~~~~~~~~Dvf~~l~~~~-~~~~fD~IIlDPPs 205 (286)
T PF10672_consen 131 FSYTGGFSVAAAA-GGAKEVVSVDSSKRALEWAKENAALNGLD---LDRHRFIQGDVFKFLKRLK-KGGRFDLIILDPPS 205 (286)
T ss_dssp T-TTTHHHHHHHH-TTESEEEEEES-HHHHHHHHHHHHHTT-C---CTCEEEEES-HHHHHHHHH-HTT-EEEEEE--SS
T ss_pred cCCCCHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHcCCC---ccceEEEecCHHHHHHHHh-cCCCCCEEEECCCC
Confidence 7899999999988 79999999999999999999999999984 3578899999999998754 356899999999
Q ss_pred CCCCH--------HHHHHHHHhcccCCEEEEEecCCCCCCCCCchhHHhhhccccCCCCCchhhhHHHHHHHHHHHHHhc
Q 019408 79 FGSDS--------SFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREASAQ 150 (341)
Q Consensus 79 ygsp~--------~fld~al~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~~~~~~E~~lR~ll~~i~~~Aa~~ 150 (341)
|.+.. ..+..+++++++||+|.+ +| |. +.++...|+..+.++|.
T Consensus 206 F~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~-~s-----cs--------------------~~i~~~~l~~~~~~~a~-- 257 (286)
T PF10672_consen 206 FAKSKFDLERDYKKLLRRAMKLLKPGGLLLT-CS-----CS--------------------HHISPDFLLEAVAEAAR-- 257 (286)
T ss_dssp EESSTCEHHHHHHHHHHHHHHTEEEEEEEEE-EE---------------------------TTS-HHHHHHHHHHHHH--
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCEEEE-Ec-----CC--------------------cccCHHHHHHHHHHhCc--
Confidence 54321 234588999999999975 66 64 33667778888887775
Q ss_pred CCcEEEEEecccCCCCeE
Q 019408 151 GYHVSPLFSYYSYHGPVF 168 (341)
Q Consensus 151 ~~~i~Pl~s~~~~~dhy~ 168 (341)
.++.+-.+.||+||+=
T Consensus 258 --~~~~~~~~~~p~df~~ 273 (286)
T PF10672_consen 258 --EVEFIERLGQPPDFPD 273 (286)
T ss_dssp --HCEEEEEEE-------
T ss_pred --cceEeeeecccccccc
Confidence 5688899999999974
No 11
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.64 E-value=1.4e-15 Score=136.77 Aligned_cols=118 Identities=16% Similarity=0.159 Sum_probs=91.2
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
|||||.+||++++ +|+.+|+++|+|+.|++++++|++.|++. ++++++++|+.+++.........||+|++|| |
T Consensus 57 faGsG~lglea~s-rga~~v~~vE~~~~a~~~~~~N~~~~~~~----~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy 131 (189)
T TIGR00095 57 FAGSGLLGEEALS-RGAKVAFLEEDDRKANQTLKENLALLKSG----EQAEVVRNSALRALKFLAKKPTFDNVIYLDPPF 131 (189)
T ss_pred cCCCcHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHHhCCc----ccEEEEehhHHHHHHHhhccCCCceEEEECcCC
Confidence 7999999999999 89999999999999999999999999884 4688999999998865433334689999999 7
Q ss_pred CCCHHHHHHHH------HhcccCCEEEEEecCCCCC---CCCCchhHHhhhcccc
Q 019408 80 GSDSSFLRTVF------NAVKRDGLLYLTSTDGYSS---GGHRPNNSLASYGAYI 125 (341)
Q Consensus 80 gsp~~fld~al------~~v~~gGlL~vt~TD~~~l---~g~~~~~~~r~Yg~~~ 125 (341)
+. .+.+..+ ..++++|+++++......+ .+.......|+||.+.
T Consensus 132 ~~--~~~~~~l~~l~~~~~l~~~~iiv~E~~~~~~~~~~~~~~~~~~~r~yG~t~ 184 (189)
T TIGR00095 132 FN--GALQALLELCENNWILEDTVLIVVEEDREPELPPVEAWLSLKRQKKGGVSY 184 (189)
T ss_pred CC--CcHHHHHHHHHHCCCCCCCeEEEEEecCCCCCCCCcCCeEEEEEeecCcEE
Confidence 65 2333322 2578889998865543332 2344556778999874
No 12
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.52 E-value=1.5e-13 Score=145.67 Aligned_cols=131 Identities=17% Similarity=0.141 Sum_probs=105.8
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC--
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-- 78 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-- 78 (341)
|||||.+||.+++ .|+.+|+++|+|+.|++.+++|+++|++. .++++++++|++++|... +++||+|++||
T Consensus 546 f~gtG~~sl~aa~-~Ga~~V~~vD~s~~al~~a~~N~~~ng~~---~~~v~~i~~D~~~~l~~~---~~~fDlIilDPP~ 618 (702)
T PRK11783 546 FAYTGTASVHAAL-GGAKSTTTVDMSNTYLEWAERNFALNGLS---GRQHRLIQADCLAWLKEA---REQFDLIFIDPPT 618 (702)
T ss_pred CCCCCHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHhCCC---ccceEEEEccHHHHHHHc---CCCcCEEEECCCC
Confidence 7999999999998 69999999999999999999999999983 246899999999998654 45899999999
Q ss_pred CCCC-------------HHHHHHHHHhcccCCEEEEEecCCCCCCCCCchhHHhhhccccCCCCCchhhhHHHHHHHHHH
Q 019408 79 FGSD-------------SSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVR 145 (341)
Q Consensus 79 ygsp-------------~~fld~al~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~~~~~~E~~lR~ll~~i~~ 145 (341)
|+.. ...+..+++.|++||+|++ ++ |... +.. ..+
T Consensus 619 f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~-~~-----~~~~--------------------~~~------~~~ 666 (702)
T PRK11783 619 FSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYF-SN-----NKRG--------------------FKM------DEE 666 (702)
T ss_pred CCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEE-Ee-----CCcc--------------------CCh------hHH
Confidence 3321 1245678899999999987 44 4321 111 166
Q ss_pred HHHhcCCcEEEEEecccCCCCeEEE
Q 019408 146 EASAQGYHVSPLFSYYSYHGPVFRV 170 (341)
Q Consensus 146 ~Aa~~~~~i~Pl~s~~~~~dhy~Rv 170 (341)
++.+.|+.++.+-...||.||++..
T Consensus 667 ~~~~~g~~~~~i~~~~~~~Dhp~~~ 691 (702)
T PRK11783 667 GLAKLGLKAEEITAKTLPPDFARNP 691 (702)
T ss_pred HHHhCCCeEEEEecCCCCCCCCCCc
Confidence 7778899999999999999999644
No 13
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.44 E-value=7.8e-13 Score=119.93 Aligned_cols=115 Identities=17% Similarity=0.204 Sum_probs=87.2
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
|||||.+||++++ +++.+|+++|+|++|++.+++|++.++++ +++++++|+.+++... .+.||+|++|| |
T Consensus 61 ~~GsG~l~l~~ls-r~a~~V~~vE~~~~a~~~a~~Nl~~~~~~-----~v~~~~~D~~~~l~~~---~~~fDlV~~DPPy 131 (199)
T PRK10909 61 FAGSGALGLEALS-RYAAGATLLEMDRAVAQQLIKNLATLKAG-----NARVVNTNALSFLAQP---GTPHNVVFVDPPF 131 (199)
T ss_pred CCCccHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHhCCC-----cEEEEEchHHHHHhhc---CCCceEEEECCCC
Confidence 6999999999888 68889999999999999999999999873 6889999999887532 34699999999 6
Q ss_pred CCCHHHHHHHHHh------cccCCEEEEEecCCCC---CCCCCchhHHhhhccccC
Q 019408 80 GSDSSFLRTVFNA------VKRDGLLYLTSTDGYS---SGGHRPNNSLASYGAYIL 126 (341)
Q Consensus 80 gsp~~fld~al~~------v~~gGlL~vt~TD~~~---l~g~~~~~~~r~Yg~~~~ 126 (341)
.. .+.+.+++. +.++++++|.+.-... +-........|+||.+-+
T Consensus 132 ~~--g~~~~~l~~l~~~~~l~~~~iv~ve~~~~~~~~~~~~~~~~~~~k~yG~s~~ 185 (199)
T PRK10909 132 RK--GLLEETINLLEDNGWLADEALIYVESEVENGLPTVPANWQLHREKVAGQVAY 185 (199)
T ss_pred CC--ChHHHHHHHHHHCCCcCCCcEEEEEecCCCCcccCCCccEEEEEecCCCEEE
Confidence 54 444444443 4678999986542222 222344567888987743
No 14
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.35 E-value=1.7e-12 Score=117.74 Aligned_cols=91 Identities=25% Similarity=0.245 Sum_probs=72.8
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
|||.|.++|.+|+-+.++.|+++|+||.|++.+++|+++|+++ +.++++++|+.+++. ...||.|+++...
T Consensus 109 faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~----~~i~~~~~D~~~~~~-----~~~~drvim~lp~ 179 (200)
T PF02475_consen 109 FAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVE----NRIEVINGDAREFLP-----EGKFDRVIMNLPE 179 (200)
T ss_dssp T-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-T----TTEEEEES-GGG--------TT-EEEEEE--TS
T ss_pred cCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCC----CeEEEEcCCHHHhcC-----ccccCEEEECChH
Confidence 8999999999998556789999999999999999999999995 678899999999886 2479999999876
Q ss_pred CCHHHHHHHHHhcccCCEEE
Q 019408 81 SDSSFLRTVFNAVKRDGLLY 100 (341)
Q Consensus 81 sp~~fld~al~~v~~gGlL~ 100 (341)
+...|++.|+.++++||+++
T Consensus 180 ~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 180 SSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp SGGGGHHHHHHHEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCcEEE
Confidence 66799999999999999986
No 15
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=99.30 E-value=4.2e-11 Score=116.26 Aligned_cols=95 Identities=21% Similarity=0.111 Sum_probs=84.6
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
|||.|-++|-+|+ .|+.+|+++|+||.|++++++|+++|+++ +.++++++|++.+..+. ..||-|+|-=+.
T Consensus 196 FAGVGpfsi~~Ak-~g~~~V~A~diNP~A~~~L~eNi~LN~v~----~~v~~i~gD~rev~~~~----~~aDrIim~~p~ 266 (341)
T COG2520 196 FAGVGPFSIPIAK-KGRPKVYAIDINPDAVEYLKENIRLNKVE----GRVEPILGDAREVAPEL----GVADRIIMGLPK 266 (341)
T ss_pred cCCcccchhhhhh-cCCceEEEEecCHHHHHHHHHHHHhcCcc----ceeeEEeccHHHhhhcc----ccCCEEEeCCCC
Confidence 8999999999999 57766999999999999999999999995 56889999999998764 479999998766
Q ss_pred CCHHHHHHHHHhcccCCEEEEEec
Q 019408 81 SDSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 81 sp~~fld~al~~v~~gGlL~vt~T 104 (341)
++-.|++.|++++++||+|..-.+
T Consensus 267 ~a~~fl~~A~~~~k~~g~iHyy~~ 290 (341)
T COG2520 267 SAHEFLPLALELLKDGGIIHYYEF 290 (341)
T ss_pred cchhhHHHHHHHhhcCcEEEEEec
Confidence 667999999999999999997543
No 16
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.19 E-value=1.3e-10 Score=94.99 Aligned_cols=95 Identities=26% Similarity=0.255 Sum_probs=78.8
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
++|||.+.+.++.. +..+++++|+|+.++++.++|+..+++. ++++++++|+.++.... ...+||+|+.|| |
T Consensus 8 ~~G~G~~~~~~~~~-~~~~~~gvdi~~~~~~~a~~~~~~~~~~----~~~~~~~~D~~~~~~~~--~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 8 GCGSGTFLLAALRR-GAARVTGVDIDPEAVELARRNLPRNGLD----DRVEVIVGDARDLPEPL--PDGKFDLIVTNPPY 80 (117)
T ss_dssp TSTTCHHHHHHHHH-CTCEEEEEESSHHHHHHHHHHCHHCTTT----TTEEEEESHHHHHHHTC--TTT-EEEEEE--ST
T ss_pred CcchHHHHHHHHHH-CCCeEEEEEECHHHHHHHHHHHHHccCC----ceEEEEECchhhchhhc--cCceeEEEEECCCC
Confidence 58999999999985 6889999999999999999999999874 57899999999887433 346899999999 7
Q ss_pred CCC-----------HHHHHHHHHhcccCCEEEEE
Q 019408 80 GSD-----------SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 80 gsp-----------~~fld~al~~v~~gGlL~vt 102 (341)
+.. ..|++.+.+.|++||.+.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 632 36788999999999999874
No 17
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.03 E-value=1.8e-09 Score=106.34 Aligned_cols=93 Identities=15% Similarity=0.140 Sum_probs=70.4
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhc------------C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLK------------R 68 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~------------~ 68 (341)
|||||.+|+..+ +++.+|+++|+|+.|++.+++|++.|+++ +++++++|+.+++...... +
T Consensus 214 ~~G~G~~sl~la--~~~~~v~~vE~~~~ai~~a~~N~~~~~~~-----~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~ 286 (362)
T PRK05031 214 YCGNGNFTLALA--RNFRRVLATEISKPSVAAAQYNIAANGID-----NVQIIRMSAEEFTQAMNGVREFNRLKGIDLKS 286 (362)
T ss_pred eccccHHHHHHH--hhCCEEEEEECCHHHHHHHHHHHHHhCCC-----cEEEEECCHHHHHHHHhhcccccccccccccC
Confidence 699999999444 36789999999999999999999999983 6889999999998754221 2
Q ss_pred CcccEEEeCC-CCCCHHHHHHHHHhc-ccCCEEEEEe
Q 019408 69 EFFDLIDIDS-FGSDSSFLRTVFNAV-KRDGLLYLTS 103 (341)
Q Consensus 69 ~~fDvIdlDP-ygsp~~fld~al~~v-~~gGlL~vt~ 103 (341)
.+||+|++|| +.- ..+.+++.+ +.+++++|+|
T Consensus 287 ~~~D~v~lDPPR~G---~~~~~l~~l~~~~~ivyvSC 320 (362)
T PRK05031 287 YNFSTIFVDPPRAG---LDDETLKLVQAYERILYISC 320 (362)
T ss_pred CCCCEEEECCCCCC---CcHHHHHHHHccCCEEEEEe
Confidence 2699999999 321 122233322 3588999854
No 18
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.00 E-value=3.4e-09 Score=104.87 Aligned_cols=92 Identities=9% Similarity=0.112 Sum_probs=73.6
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
|||||.+|+.+++ .+ .+|+++|+|+.|++.+++|++.|+++ +++++++|+.+++... ...||+|++|| +
T Consensus 241 ~cG~G~~~l~la~-~~-~~v~~vE~~~~av~~a~~N~~~~~~~-----~~~~~~~d~~~~~~~~---~~~~D~vi~DPPr 310 (374)
T TIGR02085 241 FCGVGGFGLHCAG-PD-TQLTGIEIESEAIACAQQSAQMLGLD-----NLSFAALDSAKFATAQ---MSAPELVLVNPPR 310 (374)
T ss_pred cCCccHHHHHHhh-cC-CeEEEEECCHHHHHHHHHHHHHcCCC-----cEEEEECCHHHHHHhc---CCCCCEEEECCCC
Confidence 6999999999997 55 68999999999999999999999883 6889999999887542 23599999999 4
Q ss_pred CC-CHHHHHHHHHhcccCCEEEEEe
Q 019408 80 GS-DSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 gs-p~~fld~al~~v~~gGlL~vt~ 103 (341)
.- ...+++ ++..++++++++|.|
T Consensus 311 ~G~~~~~l~-~l~~~~p~~ivyvsc 334 (374)
T TIGR02085 311 RGIGKELCD-YLSQMAPKFILYSSC 334 (374)
T ss_pred CCCcHHHHH-HHHhcCCCeEEEEEe
Confidence 32 223344 444578899999854
No 19
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.95 E-value=6.8e-09 Score=96.40 Aligned_cols=98 Identities=17% Similarity=0.128 Sum_probs=78.9
Q ss_pred ccccHhHHHHhhh-CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhc--CCcccEEEeCC
Q 019408 2 CGCGIRSLRYLAE-AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLK--REFFDLIDIDS 78 (341)
Q Consensus 2 agsG~rgir~a~e-~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~--~~~fDvIdlDP 78 (341)
+|+|.-++..+.. .+..+|+++|+|+++++.+++|++.+++. ++++++++||.+.|..+... .+.||+|++|.
T Consensus 77 t~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~----~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa 152 (234)
T PLN02781 77 VFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVD----HKINFIQSDALSALDQLLNNDPKPEFDFAFVDA 152 (234)
T ss_pred CcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC----CcEEEEEccHHHHHHHHHhCCCCCCCCEEEECC
Confidence 5788877766654 44579999999999999999999999985 67899999999999876433 35799999996
Q ss_pred CC-CCHHHHHHHHHhcccCCEEEEEe
Q 019408 79 FG-SDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 yg-sp~~fld~al~~v~~gGlL~vt~ 103 (341)
-. ....+++.+++.+++||+|.+.-
T Consensus 153 ~k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 153 DKPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 21 11367889999999999999744
No 20
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.95 E-value=6.4e-09 Score=104.56 Aligned_cols=95 Identities=17% Similarity=0.169 Sum_probs=76.8
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC--
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-- 78 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-- 78 (341)
+||+|.+++.+++ .+.+|+++|+|+.+++.+++|++.|++ .+++++++|+.+++.........||+|++||
T Consensus 300 ~cG~G~~sl~la~--~~~~V~~vE~~~~av~~a~~n~~~~~~-----~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPPr 372 (431)
T TIGR00479 300 YCGVGTFTLPLAK--QAKSVVGIEVVPESVEKAQQNAELNGI-----ANVEFLAGTLETVLPKQPWAGQIPDVLLLDPPR 372 (431)
T ss_pred CCCcCHHHHHHHH--hCCEEEEEEcCHHHHHHHHHHHHHhCC-----CceEEEeCCHHHHHHHHHhcCCCCCEEEECcCC
Confidence 6899999999887 357899999999999999999999988 3688999999988765433345799999999
Q ss_pred CCCCHHHHHHHHHhcccCCEEEEEe
Q 019408 79 FGSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 ygsp~~fld~al~~v~~gGlL~vt~ 103 (341)
.|-...+++ ++..++++++++++|
T Consensus 373 ~G~~~~~l~-~l~~l~~~~ivyvsc 396 (431)
T TIGR00479 373 KGCAAEVLR-TIIELKPERIVYVSC 396 (431)
T ss_pred CCCCHHHHH-HHHhcCCCEEEEEcC
Confidence 343346665 455688999999844
No 21
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.94 E-value=7.2e-09 Score=101.83 Aligned_cols=93 Identities=18% Similarity=0.159 Sum_probs=70.2
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhh-------c-----C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYL-------K-----R 68 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~-------~-----~ 68 (341)
|||||.+|+-.+. ++.+|+++|+|++|++.+++|++.|+++ +++++++|+.+++..... . .
T Consensus 205 ~~G~G~~sl~la~--~~~~v~~vE~~~~av~~a~~n~~~~~~~-----~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 277 (353)
T TIGR02143 205 YCGNGNFSLALAQ--NFRRVLATEIAKPSVNAAQYNIAANNID-----NVQIIRMSAEEFTQAMNGVREFRRLKGIDLKS 277 (353)
T ss_pred eccccHHHHHHHH--hCCEEEEEECCHHHHHHHHHHHHHcCCC-----cEEEEEcCHHHHHHHHhhcccccccccccccc
Confidence 6999999994443 6779999999999999999999999984 688999999999864211 1 1
Q ss_pred CcccEEEeCCC--CCCHHHHHHHHHhcccCCEEEEEe
Q 019408 69 EFFDLIDIDSF--GSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 69 ~~fDvIdlDPy--gsp~~fld~al~~v~~gGlL~vt~ 103 (341)
.+||+|++||- |.....++.. .+++++++|+|
T Consensus 278 ~~~d~v~lDPPR~G~~~~~l~~l---~~~~~ivYvsC 311 (353)
T TIGR02143 278 YNCSTIFVDPPRAGLDPDTCKLV---QAYERILYISC 311 (353)
T ss_pred CCCCEEEECCCCCCCcHHHHHHH---HcCCcEEEEEc
Confidence 24899999993 3222333432 23689999955
No 22
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=5.5e-09 Score=93.15 Aligned_cols=78 Identities=23% Similarity=0.268 Sum_probs=68.4
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
||||++||-++. .||.+|+++|++++|+++.++|++.++ .+++++..|+.++ ..+||.|+++| ||
T Consensus 54 ~GTG~La~ga~~-lGa~~V~~vdiD~~a~ei~r~N~~~l~------g~v~f~~~dv~~~-------~~~~dtvimNPPFG 119 (198)
T COG2263 54 AGTGILAIGAAL-LGASRVLAVDIDPEALEIARANAEELL------GDVEFVVADVSDF-------RGKFDTVIMNPPFG 119 (198)
T ss_pred CCcCHHHHHHHh-cCCcEEEEEecCHHHHHHHHHHHHhhC------CceEEEEcchhhc-------CCccceEEECCCCc
Confidence 799999999999 899999999999999999999999843 4688999999875 24799999999 98
Q ss_pred C-----CHHHHHHHHHhc
Q 019408 81 S-----DSSFLRTVFNAV 93 (341)
Q Consensus 81 s-----p~~fld~al~~v 93 (341)
+ -.+|++.|++.-
T Consensus 120 ~~~rhaDr~Fl~~Ale~s 137 (198)
T COG2263 120 SQRRHADRPFLLKALEIS 137 (198)
T ss_pred cccccCCHHHHHHHHHhh
Confidence 6 358999999864
No 23
>PLN02476 O-methyltransferase
Probab=98.87 E-value=1.7e-08 Score=95.84 Aligned_cols=97 Identities=13% Similarity=0.111 Sum_probs=80.2
Q ss_pred ccccHhHHHHhhhCC-CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhc--CCcccEEEeCC
Q 019408 2 CGCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLK--REFFDLIDIDS 78 (341)
Q Consensus 2 agsG~rgir~a~e~g-a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~--~~~fDvIdlDP 78 (341)
+++|.-+|.+|+-.+ -.+|+.+|.+++..+.+++|++..|+. ++++++.+||.+.|.++..+ ...||+|++|+
T Consensus 127 T~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~----~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa 202 (278)
T PLN02476 127 VYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVS----HKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDA 202 (278)
T ss_pred CCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC----CcEEEEEcCHHHHHHHHHhcccCCCCCEEEECC
Confidence 689999999987422 347999999999999999999999985 68999999999999876322 25799999999
Q ss_pred CC-CCHHHHHHHHHhcccCCEEEEE
Q 019408 79 FG-SDSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 79 yg-sp~~fld~al~~v~~gGlL~vt 102 (341)
-. .-..+++.++++|++||+|.+-
T Consensus 203 ~K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 203 DKRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 32 1237788999999999999974
No 24
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.85 E-value=4.9e-08 Score=87.21 Aligned_cols=127 Identities=15% Similarity=0.119 Sum_probs=95.6
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
||||..++.++......+|+++|+|+.+++.+++|++.+++. +++++++|+.++. ....||+|+.+.+..
T Consensus 51 cGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~-----~i~~i~~d~~~~~-----~~~~fD~I~s~~~~~ 120 (181)
T TIGR00138 51 SGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN-----NVEIVNGRAEDFQ-----HEEQFDVITSRALAS 120 (181)
T ss_pred CCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC-----CeEEEecchhhcc-----ccCCccEEEehhhhC
Confidence 799999999986434568999999999999999999998873 5889999998752 135899999998665
Q ss_pred CHHHHHHHHHhcccCCEEEEEecCCCCCCCCCchhHHhhhccccCCCCCchhhhHHHHHHHHHHHHHhcCCcEEEEEecc
Q 019408 82 DSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYY 161 (341)
Q Consensus 82 p~~fld~al~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~~~~~~E~~lR~ll~~i~~~Aa~~~~~i~Pl~s~~ 161 (341)
...+++.+.+.|++||.+++.. |.. .. .-+..+.++++..|....+.=++.
T Consensus 121 ~~~~~~~~~~~LkpgG~lvi~~-------~~~---------------------~~-~~~~~~~e~~~~~~~~~~~~~~~~ 171 (181)
T TIGR00138 121 LNVLLELTLNLLKVGGYFLAYK-------GKK---------------------YL-DEIEEAKRKCQVLGVEPLEVPPLT 171 (181)
T ss_pred HHHHHHHHHHhcCCCCEEEEEc-------CCC---------------------cH-HHHHHHHHhhhhcCceEeeccccC
Confidence 5567788889999999999732 221 11 122334477777877777777777
Q ss_pred cCCCCe
Q 019408 162 SYHGPV 167 (341)
Q Consensus 162 ~~~dhy 167 (341)
.|+.|.
T Consensus 172 ~~~~~~ 177 (181)
T TIGR00138 172 GPDRHL 177 (181)
T ss_pred CCceEE
Confidence 665444
No 25
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.81 E-value=3.1e-08 Score=92.90 Aligned_cols=92 Identities=18% Similarity=0.169 Sum_probs=71.6
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
+||||..++..+.+.+..+|+++|+|+.|++.+++|++.|+. +++++|+.+.+.... ..+||+|+.|| |
T Consensus 94 g~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~--------~~~~~D~~~~l~~~~--~~~fDlVv~NPPy 163 (251)
T TIGR03704 94 CCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGG--------TVHEGDLYDALPTAL--RGRVDILAANAPY 163 (251)
T ss_pred cCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--------EEEEeechhhcchhc--CCCEeEEEECCCC
Confidence 589999999998764446899999999999999999998753 468899887664321 24799999999 5
Q ss_pred CCC-----------------------------HHHHHHHHHhcccCCEEEEE
Q 019408 80 GSD-----------------------------SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 80 gsp-----------------------------~~fld~al~~v~~gGlL~vt 102 (341)
-.. ..+++.|.+.|++||.+++.
T Consensus 164 ~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 164 VPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred CCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 311 13445667899999999984
No 26
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=98.80 E-value=9.4e-09 Score=90.61 Aligned_cols=91 Identities=27% Similarity=0.297 Sum_probs=72.1
Q ss_pred ccccHhHHHHhhhCCCC-EEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 2 CGCGIRSLRYLAEAKAD-FVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~-~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
||||+.|+-.++. +.. +|+++|+|+.|++.+++|++.|+++ + +++++.|..+.+. ..+||+|+.+| |
T Consensus 40 ~G~G~i~~~la~~-~~~~~v~~vDi~~~a~~~a~~n~~~n~~~----~-v~~~~~d~~~~~~-----~~~fD~Iv~NPP~ 108 (170)
T PF05175_consen 40 CGSGVISLALAKR-GPDAKVTAVDINPDALELAKRNAERNGLE----N-VEVVQSDLFEALP-----DGKFDLIVSNPPF 108 (170)
T ss_dssp STTSHHHHHHHHT-STCEEEEEEESBHHHHHHHHHHHHHTTCT----T-EEEEESSTTTTCC-----TTCEEEEEE---S
T ss_pred CChHHHHHHHHHh-CCCCEEEEEcCCHHHHHHHHHHHHhcCcc----c-ccccccccccccc-----ccceeEEEEccch
Confidence 7999999999884 544 7999999999999999999999984 3 8899999875432 46899999999 4
Q ss_pred --CC------CHHHHHHHHHhcccCCEEEEEe
Q 019408 80 --GS------DSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 --gs------p~~fld~al~~v~~gGlL~vt~ 103 (341)
|. ...|+..|-+.|++||.|.+..
T Consensus 109 ~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 109 HAGGDDGLDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp BTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hcccccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence 21 1356778889999999997533
No 27
>PRK14967 putative methyltransferase; Provisional
Probab=98.80 E-value=3.2e-08 Score=90.83 Aligned_cols=92 Identities=20% Similarity=0.088 Sum_probs=74.1
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
.||+|..++.+++ .++.+|+++|+|+.+++.+++|++.+++ +++++++|+.+.+. ...||+|+.|| |
T Consensus 44 GcG~G~~~~~la~-~~~~~v~~vD~s~~~l~~a~~n~~~~~~------~~~~~~~d~~~~~~-----~~~fD~Vi~npPy 111 (223)
T PRK14967 44 CTGSGALAVAAAA-AGAGSVTAVDISRRAVRSARLNALLAGV------DVDVRRGDWARAVE-----FRPFDVVVSNPPY 111 (223)
T ss_pred cCCHHHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHHhCC------eeEEEECchhhhcc-----CCCeeEEEECCCC
Confidence 3799999999988 4777999999999999999999998876 46788899876432 35799999997 6
Q ss_pred CCC------------------------HHHHHHHHHhcccCCEEEEEec
Q 019408 80 GSD------------------------SSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 80 gsp------------------------~~fld~al~~v~~gGlL~vt~T 104 (341)
... ..+++.+.+.|++||.+.+...
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 112 VPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred CCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 421 1256678899999999997543
No 28
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.80 E-value=1.4e-07 Score=88.02 Aligned_cols=138 Identities=14% Similarity=0.175 Sum_probs=101.7
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C-
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F- 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y- 79 (341)
||+|+.||-.|+...-.+|+++|+++++++.+++|+++|+++ ++++++++|...+...... ..||+|+..| |
T Consensus 53 aG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~----~ri~v~~~Di~~~~~~~~~--~~fD~Ii~NPPyf 126 (248)
T COG4123 53 AGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLE----ERIQVIEADIKEFLKALVF--ASFDLIICNPPYF 126 (248)
T ss_pred CCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcch----hceeEehhhHHHhhhcccc--cccCEEEeCCCCC
Confidence 799999999998424478999999999999999999999985 7899999999999876532 3699999999 4
Q ss_pred CCCH--------------------HHHHHHHHhcccCCEEEEEecCCCCCCCCCchhHHhhhccccCCCCCchhhhHHHH
Q 019408 80 GSDS--------------------SFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYGAYILPMPYSNEIGLRML 139 (341)
Q Consensus 80 gsp~--------------------~fld~al~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~~~~~~E~~lR~l 139 (341)
.... .++..|-++|++||.|++... .| -
T Consensus 127 ~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r---------------------------~e-----r 174 (248)
T COG4123 127 KQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHR---------------------------PE-----R 174 (248)
T ss_pred CCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEec---------------------------HH-----H
Confidence 2211 234577789999999998432 11 2
Q ss_pred HHHHHHHHHhcCC---cEEEEEecccCCCCeEEEEEEEEeCcc
Q 019408 140 IGGAVREASAQGY---HVSPLFSYYSYHGPVFRVMLRVHRKAL 179 (341)
Q Consensus 140 l~~i~~~Aa~~~~---~i~Pl~s~~~~~dhy~Rv~vrv~~~~~ 179 (341)
+..+...+.+++. .++.+...- ..-.-||.++..++..
T Consensus 175 l~ei~~~l~~~~~~~k~i~~V~p~~--~k~A~~vLv~~~k~~~ 215 (248)
T COG4123 175 LAEIIELLKSYNLEPKRIQFVYPKI--GKAANRVLVEAIKGGK 215 (248)
T ss_pred HHHHHHHHHhcCCCceEEEEecCCC--CCcceEEEEEEecCCC
Confidence 3344455556554 444444444 5566788888877665
No 29
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.80 E-value=3.3e-08 Score=99.92 Aligned_cols=95 Identities=14% Similarity=0.177 Sum_probs=75.3
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
+||||..++..+.. + .+|+++|+|+.+++.+++|++.|++. ++++.++|+.+.+.........||+|++|| |
T Consensus 305 gcGtG~~sl~la~~-~-~~V~gvD~s~~al~~A~~n~~~~~~~-----~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr 377 (443)
T PRK13168 305 FCGLGNFTLPLARQ-A-AEVVGVEGVEAMVERARENARRNGLD-----NVTFYHANLEEDFTDQPWALGGFDKVLLDPPR 377 (443)
T ss_pred eccCCHHHHHHHHh-C-CEEEEEeCCHHHHHHHHHHHHHcCCC-----ceEEEEeChHHhhhhhhhhcCCCCEEEECcCC
Confidence 58999999998873 4 68999999999999999999999883 588999999987643222234799999999 5
Q ss_pred CCCHHHHHHHHHhcccCCEEEEEe
Q 019408 80 GSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 gsp~~fld~al~~v~~gGlL~vt~ 103 (341)
....+.+ .++..++++++++|+|
T Consensus 378 ~g~~~~~-~~l~~~~~~~ivyvSC 400 (443)
T PRK13168 378 AGAAEVM-QALAKLGPKRIVYVSC 400 (443)
T ss_pred cChHHHH-HHHHhcCCCeEEEEEe
Confidence 4344555 4555578999999955
No 30
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.80 E-value=4e-08 Score=93.77 Aligned_cols=94 Identities=17% Similarity=0.127 Sum_probs=74.7
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
.||||..++..++.....+|+++|+|+.+++.+++|++.+++. ++++++++|+.+.+. +.+||+|+.|| |
T Consensus 129 G~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~----~~i~~~~~D~~~~~~-----~~~fD~Iv~NPPy 199 (284)
T TIGR03533 129 CTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLE----DRVTLIQSDLFAALP-----GRKYDLIVSNPPY 199 (284)
T ss_pred eCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC----CcEEEEECchhhccC-----CCCccEEEECCCC
Confidence 3899999999998633458999999999999999999999874 468899999876442 34799999998 6
Q ss_pred CCC----------------------------HHHHHHHHHhcccCCEEEEEe
Q 019408 80 GSD----------------------------SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 gsp----------------------------~~fld~al~~v~~gGlL~vt~ 103 (341)
... ..++..+.+.|++||.|+++.
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~ 251 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEV 251 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 431 123556678999999999743
No 31
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.80 E-value=5.1e-08 Score=94.27 Aligned_cols=92 Identities=13% Similarity=0.112 Sum_probs=73.3
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC--
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-- 78 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-- 78 (341)
+||+|.+++.+++ .+ .+|+++|+|+.+++.+++|++.|++. +++++++|+.+++... ...||+|++||
T Consensus 181 ~cG~G~~sl~la~-~~-~~V~gvD~s~~av~~A~~n~~~~~l~-----~v~~~~~D~~~~~~~~---~~~~D~Vv~dPPr 250 (315)
T PRK03522 181 FCGVGGFGLHCAT-PG-MQLTGIEISAEAIACAKQSAAELGLT-----NVQFQALDSTQFATAQ---GEVPDLVLVNPPR 250 (315)
T ss_pred cCCCCHHHHHHHh-cC-CEEEEEeCCHHHHHHHHHHHHHcCCC-----ceEEEEcCHHHHHHhc---CCCCeEEEECCCC
Confidence 5899999999998 56 68999999999999999999999883 6889999999887432 24699999999
Q ss_pred CCCCHHHHHHHHHhcccCCEEEEEe
Q 019408 79 FGSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 ygsp~~fld~al~~v~~gGlL~vt~ 103 (341)
-|.. +-+-..+....++++++++|
T Consensus 251 ~G~~-~~~~~~l~~~~~~~ivyvsc 274 (315)
T PRK03522 251 RGIG-KELCDYLSQMAPRFILYSSC 274 (315)
T ss_pred CCcc-HHHHHHHHHcCCCeEEEEEC
Confidence 2322 33334566677888999844
No 32
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.77 E-value=8.8e-08 Score=86.32 Aligned_cols=94 Identities=18% Similarity=0.190 Sum_probs=76.8
Q ss_pred ccccHhHHHHhhhCC-CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCC-
Q 019408 2 CGCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSF- 79 (341)
Q Consensus 2 agsG~rgir~a~e~g-a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPy- 79 (341)
||||.+++.+++..+ ..+|+++|+|+.+++.+++|++.+++. ++++++++|+.+++... ...||.|++...
T Consensus 49 ~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~----~~v~~~~~d~~~~l~~~---~~~~D~V~~~~~~ 121 (198)
T PRK00377 49 CGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVL----NNIVLIKGEAPEILFTI---NEKFDRIFIGGGS 121 (198)
T ss_pred CcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCC----CCeEEEEechhhhHhhc---CCCCCEEEECCCc
Confidence 799999999987533 468999999999999999999999853 46788899998876543 247999999762
Q ss_pred CCCHHHHHHHHHhcccCCEEEEE
Q 019408 80 GSDSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 80 gsp~~fld~al~~v~~gGlL~vt 102 (341)
..+..+++.+.+.|++||.+++.
T Consensus 122 ~~~~~~l~~~~~~LkpgG~lv~~ 144 (198)
T PRK00377 122 EKLKEIISASWEIIKKGGRIVID 144 (198)
T ss_pred ccHHHHHHHHHHHcCCCcEEEEE
Confidence 23457888999999999999873
No 33
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=4.8e-08 Score=98.30 Aligned_cols=94 Identities=16% Similarity=0.191 Sum_probs=78.2
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCC-
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSF- 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPy- 79 (341)
|||.|.+||..|. .+.+|+.+|++++|++.+++|++.|++. ++++..+||.+++.... .+..||.|++||-
T Consensus 301 YCGvG~f~l~lA~--~~~~V~gvEi~~~aV~~A~~NA~~n~i~-----N~~f~~~~ae~~~~~~~-~~~~~d~VvvDPPR 372 (432)
T COG2265 301 YCGVGTFGLPLAK--RVKKVHGVEISPEAVEAAQENAAANGID-----NVEFIAGDAEEFTPAWW-EGYKPDVVVVDPPR 372 (432)
T ss_pred ccCCChhhhhhcc--cCCEEEEEecCHHHHHHHHHHHHHcCCC-----cEEEEeCCHHHHhhhcc-ccCCCCEEEECCCC
Confidence 6999999999995 6789999999999999999999999994 58899999999987653 4568999999994
Q ss_pred -CCCHHHHHHHHHhcccCCEEEEEe
Q 019408 80 -GSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 -gsp~~fld~al~~v~~gGlL~vt~ 103 (341)
|-...+++ .+..+++..+++|+|
T Consensus 373 ~G~~~~~lk-~l~~~~p~~IvYVSC 396 (432)
T COG2265 373 AGADREVLK-QLAKLKPKRIVYVSC 396 (432)
T ss_pred CCCCHHHHH-HHHhcCCCcEEEEeC
Confidence 32334554 455678889999955
No 34
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.75 E-value=1.1e-07 Score=89.85 Aligned_cols=94 Identities=24% Similarity=0.321 Sum_probs=74.2
Q ss_pred CccccHhHHHHhhhCC-CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-
Q 019408 1 MCGCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS- 78 (341)
Q Consensus 1 fagsG~rgir~a~e~g-a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP- 78 (341)
+||+|..++.++...+ ...|+++|+|+..++.+++|++.+++. .+++++.|+..+... ...||+|++||
T Consensus 79 ~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~-----~v~~~~~D~~~~~~~----~~~fD~Vl~D~P 149 (264)
T TIGR00446 79 AAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL-----NVAVTNFDGRVFGAA----VPKFDAILLDAP 149 (264)
T ss_pred CCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-----cEEEecCCHHHhhhh----ccCCCEEEEcCC
Confidence 5899999998876432 358999999999999999999999883 588899999765321 23599999998
Q ss_pred -CCC------C------------------HHHHHHHHHhcccCCEEEEEec
Q 019408 79 -FGS------D------------------SSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 79 -ygs------p------------------~~fld~al~~v~~gGlL~vt~T 104 (341)
.|+ | ...++.|++.|++||.|.. +|
T Consensus 150 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvY-st 199 (264)
T TIGR00446 150 CSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVY-ST 199 (264)
T ss_pred CCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEE-Ee
Confidence 332 0 1366788999999999874 66
No 35
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.74 E-value=7.2e-08 Score=93.06 Aligned_cols=92 Identities=18% Similarity=0.129 Sum_probs=74.3
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
+|||..++..+++....+|+++|+|+.|++.+++|++.+++. ++++++++|+.+.+. ..+||+|+.|| |.
T Consensus 142 ~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~----~~i~~~~~D~~~~l~-----~~~fDlIvsNPPyi 212 (307)
T PRK11805 142 TGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLE----DRVTLIESDLFAALP-----GRRYDLIVSNPPYV 212 (307)
T ss_pred chhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC----CcEEEEECchhhhCC-----CCCccEEEECCCCC
Confidence 799999999998644568999999999999999999999874 468899999876542 24799999998 64
Q ss_pred CC----------------------------HHHHHHHHHhcccCCEEEEE
Q 019408 81 SD----------------------------SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 81 sp----------------------------~~fld~al~~v~~gGlL~vt 102 (341)
.. ..++..+.+.|++||.|+++
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 21 13355777889999999984
No 36
>PRK00811 spermidine synthase; Provisional
Probab=98.73 E-value=1.2e-07 Score=90.42 Aligned_cols=99 Identities=22% Similarity=0.263 Sum_probs=75.7
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeC---C
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDID---S 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlD---P 78 (341)
+|+|..+.++++..++.+|+++|+|+..++++++++...+....+..+++++.+|+.+++.. ..++||+|++| |
T Consensus 85 ~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~---~~~~yDvIi~D~~dp 161 (283)
T PRK00811 85 GGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE---TENSFDVIIVDSTDP 161 (283)
T ss_pred cCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh---CCCcccEEEECCCCC
Confidence 57888888887745788999999999999999999875321100124788999999999875 24689999997 4
Q ss_pred CCCC-----HHHHHHHHHhcccCCEEEEEe
Q 019408 79 FGSD-----SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 ygsp-----~~fld~al~~v~~gGlL~vt~ 103 (341)
++.+ ..|+..+-+.|++||++++..
T Consensus 162 ~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 162 VGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred CCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 5433 356777889999999998743
No 37
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=98.72 E-value=8.2e-08 Score=77.56 Aligned_cols=94 Identities=19% Similarity=0.113 Sum_probs=73.5
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCC-C
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSF-G 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPy-g 80 (341)
||+|..++.+++.....+|+++|+|+++++.+++|+...+.. .+++++++|+ .... ....+||+|+++-| .
T Consensus 10 cG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~----~~i~~~~~d~-~~~~---~~~~~~D~v~~~~~~~ 81 (112)
T PF12847_consen 10 CGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLS----DRITFVQGDA-EFDP---DFLEPFDLVICSGFTL 81 (112)
T ss_dssp TTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTT----TTEEEEESCC-HGGT---TTSSCEEEEEECSGSG
T ss_pred CcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCC----CCeEEEECcc-ccCc---ccCCCCCEEEECCCcc
Confidence 799999999998534456999999999999999999766653 6889999999 3322 23457999999882 1
Q ss_pred --CC-----HHHHHHHHHhcccCCEEEEEe
Q 019408 81 --SD-----SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 81 --sp-----~~fld~al~~v~~gGlL~vt~ 103 (341)
.. ..+++.+.+.|++||+|.++.
T Consensus 82 ~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 82 HFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 11 234778889999999999864
No 38
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.71 E-value=1.1e-07 Score=77.71 Aligned_cols=95 Identities=19% Similarity=0.169 Sum_probs=76.2
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
.+|+|..++.++++.+..+|+++|+|+.+++.+++|++.+++. ++++...|+...+... ..+||+|+++. .
T Consensus 27 G~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~~---~~~~D~v~~~~~~ 98 (124)
T TIGR02469 27 GAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS-----NIVIVEGDAPEALEDS---LPEPDRVFIGGSG 98 (124)
T ss_pred CCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC-----ceEEEeccccccChhh---cCCCCEEEECCcc
Confidence 3799999999998644578999999999999999999988773 5778888887544322 24799999985 3
Q ss_pred CCCHHHHHHHHHhcccCCEEEEEe
Q 019408 80 GSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 gsp~~fld~al~~v~~gGlL~vt~ 103 (341)
.....+++.+.+.+++||.++++.
T Consensus 99 ~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 99 GLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred hhHHHHHHHHHHHcCCCCEEEEEe
Confidence 333467889999999999999753
No 39
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.70 E-value=1.5e-07 Score=84.08 Aligned_cols=94 Identities=19% Similarity=0.196 Sum_probs=80.7
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
||||..+|+++.-.-..+|+++|.++++++++++|++.+++ ++++++.+||-+.|... ..||.||+-==+.
T Consensus 43 aGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~-----~n~~vv~g~Ap~~L~~~----~~~daiFIGGg~~ 113 (187)
T COG2242 43 AGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV-----DNLEVVEGDAPEALPDL----PSPDAIFIGGGGN 113 (187)
T ss_pred CCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-----CcEEEEeccchHhhcCC----CCCCEEEECCCCC
Confidence 79999999999632357899999999999999999999997 47899999999998743 2699999986454
Q ss_pred CHHHHHHHHHhcccCCEEEEEec
Q 019408 82 DSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 82 p~~fld~al~~v~~gGlL~vt~T 104 (341)
-...++.+...|++||-|.+++.
T Consensus 114 i~~ile~~~~~l~~ggrlV~nai 136 (187)
T COG2242 114 IEEILEAAWERLKPGGRLVANAI 136 (187)
T ss_pred HHHHHHHHHHHcCcCCeEEEEee
Confidence 55778899999999999998773
No 40
>PRK10742 putative methyltransferase; Provisional
Probab=98.68 E-value=6.7e-08 Score=90.09 Aligned_cols=76 Identities=14% Similarity=0.155 Sum_probs=61.7
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCC--CCC--CccEEEEeccHHHHHHHhhhcCCcccEEEe
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERG--SGD--EKRWVVTHFDANRVLSECYLKREFFDLIDI 76 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~--~~~--~~~~~v~~~DA~~~l~~~~~~~~~fDvIdl 76 (341)
|||+|.-|+++++ +|++ |+++|.|+.+..++++|++..... .+. ..+++++++|+.++|... ...||+|++
T Consensus 96 TAGlG~Da~~las-~G~~-V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~---~~~fDVVYl 170 (250)
T PRK10742 96 TAGLGRDAFVLAS-VGCR-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI---TPRPQVVYL 170 (250)
T ss_pred CCCccHHHHHHHH-cCCE-EEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhC---CCCCcEEEE
Confidence 6999999999999 7988 999999999999999999974110 000 035889999999999864 337999999
Q ss_pred CC-CCC
Q 019408 77 DS-FGS 81 (341)
Q Consensus 77 DP-ygs 81 (341)
|| |-.
T Consensus 171 DPMfp~ 176 (250)
T PRK10742 171 DPMFPH 176 (250)
T ss_pred CCCCCC
Confidence 99 643
No 41
>PRK04457 spermidine synthase; Provisional
Probab=98.68 E-value=1.5e-07 Score=88.96 Aligned_cols=95 Identities=21% Similarity=0.234 Sum_probs=76.4
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
+|+|..+...+......+|+++|+|++.++.+++++..++.. .+++++.+|+.+++... ..+||+|++|.|..
T Consensus 75 ~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~----~rv~v~~~Da~~~l~~~---~~~yD~I~~D~~~~ 147 (262)
T PRK04457 75 LGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENG----ERFEVIEADGAEYIAVH---RHSTDVILVDGFDG 147 (262)
T ss_pred CCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCC----CceEEEECCHHHHHHhC---CCCCCEEEEeCCCC
Confidence 478887776665444568999999999999999998765432 47889999999998753 35799999998753
Q ss_pred C--------HHHHHHHHHhcccCCEEEEEe
Q 019408 82 D--------SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 82 p--------~~fld~al~~v~~gGlL~vt~ 103 (341)
. ..|+..+.+.|++||+|.+..
T Consensus 148 ~~~~~~l~t~efl~~~~~~L~pgGvlvin~ 177 (262)
T PRK04457 148 EGIIDALCTQPFFDDCRNALSSDGIFVVNL 177 (262)
T ss_pred CCCccccCcHHHHHHHHHhcCCCcEEEEEc
Confidence 2 588899999999999999853
No 42
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.67 E-value=4.1e-08 Score=93.88 Aligned_cols=90 Identities=19% Similarity=0.125 Sum_probs=67.8
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
+|||++||-+++ .||.+|+++|+||.|++..++|+++|++. ...++...+..... .+++||+|+-.=...
T Consensus 171 cGSGILaIAa~k-LGA~~v~g~DiDp~AV~aa~eNa~~N~v~----~~~~~~~~~~~~~~-----~~~~~DvIVANILA~ 240 (300)
T COG2264 171 CGSGILAIAAAK-LGAKKVVGVDIDPQAVEAARENARLNGVE----LLVQAKGFLLLEVP-----ENGPFDVIVANILAE 240 (300)
T ss_pred CChhHHHHHHHH-cCCceEEEecCCHHHHHHHHHHHHHcCCc----hhhhcccccchhhc-----ccCcccEEEehhhHH
Confidence 799999999999 89999999999999999999999999984 11222222222222 235899997654322
Q ss_pred -CHHHHHHHHHhcccCCEEEE
Q 019408 82 -DSSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 82 -p~~fld~al~~v~~gGlL~v 101 (341)
-..+.+...+.+++||+|++
T Consensus 241 vl~~La~~~~~~lkpgg~lIl 261 (300)
T COG2264 241 VLVELAPDIKRLLKPGGRLIL 261 (300)
T ss_pred HHHHHHHHHHHHcCCCceEEE
Confidence 23556677889999999997
No 43
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.66 E-value=1.4e-07 Score=84.76 Aligned_cols=91 Identities=15% Similarity=0.103 Sum_probs=78.2
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
||+|..++.++......+|+++|+|+++++.+++|++.++++ .+++.++|+.++. . .++||+|+.+-++.
T Consensus 54 cGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~-----~i~~~~~d~~~~~----~-~~~fDlV~~~~~~~ 123 (187)
T PRK00107 54 SGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK-----NVTVVHGRAEEFG----Q-EEKFDVVTSRAVAS 123 (187)
T ss_pred CCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC-----CEEEEeccHhhCC----C-CCCccEEEEccccC
Confidence 799999999987645568999999999999999999999884 4889999997742 1 45899999988776
Q ss_pred CHHHHHHHHHhcccCCEEEEE
Q 019408 82 DSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 82 p~~fld~al~~v~~gGlL~vt 102 (341)
+..++..+.+.|++||.+++-
T Consensus 124 ~~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 124 LSDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred HHHHHHHHHHhcCCCeEEEEE
Confidence 778889999999999999974
No 44
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.65 E-value=1.7e-07 Score=89.28 Aligned_cols=94 Identities=17% Similarity=0.110 Sum_probs=73.8
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
.+|||..++..+.+....+|+++|+|+.|++.+++|++.+++. +++++.++|+.+.+. +.+||+|+.+| |
T Consensus 122 G~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~----~~v~~~~~d~~~~~~-----~~~fDlIvsNPPy 192 (284)
T TIGR00536 122 GTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLE----HRVEFIQSNLFEPLA-----GQKIDIIVSNPPY 192 (284)
T ss_pred eccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC----CcEEEEECchhccCc-----CCCccEEEECCCC
Confidence 3899999999998643358999999999999999999999874 458899999876431 23799999998 6
Q ss_pred CCCH----------------------------HHHHHHHHhcccCCEEEEEe
Q 019408 80 GSDS----------------------------SFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 gsp~----------------------------~fld~al~~v~~gGlL~vt~ 103 (341)
-... .++..+.+.|++||+|.++-
T Consensus 193 i~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~ 244 (284)
T TIGR00536 193 IDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEI 244 (284)
T ss_pred CCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 4321 23456677899999998744
No 45
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.65 E-value=1.6e-07 Score=94.95 Aligned_cols=95 Identities=24% Similarity=0.243 Sum_probs=76.1
Q ss_pred CccccHhHHHHhhhC-CCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-
Q 019408 1 MCGCGIRSLRYLAEA-KADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS- 78 (341)
Q Consensus 1 fagsG~rgir~a~e~-ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP- 78 (341)
.||+|..++.++... +..+|+++|+|+.+++.+++|++.+++. .++++++|+..++... .+.||+|++||
T Consensus 258 gaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-----~v~~~~~D~~~~~~~~---~~~fD~Vl~D~P 329 (444)
T PRK14902 258 CAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-----NIETKALDARKVHEKF---AEKFDKILVDAP 329 (444)
T ss_pred CCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-----eEEEEeCCcccccchh---cccCCEEEEcCC
Confidence 489999999998753 3568999999999999999999999884 4889999998764322 14799999998
Q ss_pred -CCC------C------------------HHHHHHHHHhcccCCEEEEEec
Q 019408 79 -FGS------D------------------SSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 79 -ygs------p------------------~~fld~al~~v~~gGlL~vt~T 104 (341)
+|. | ..+++.|.+.|++||.|.. +|
T Consensus 330 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy-st 379 (444)
T PRK14902 330 CSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVY-ST 379 (444)
T ss_pred CCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEE-Ec
Confidence 222 0 1357788999999999985 55
No 46
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.64 E-value=1.8e-07 Score=94.36 Aligned_cols=98 Identities=17% Similarity=0.162 Sum_probs=75.4
Q ss_pred CccccHhHHHHhhhC-CCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCC
Q 019408 1 MCGCGIRSLRYLAEA-KADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSF 79 (341)
Q Consensus 1 fagsG~rgir~a~e~-ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPy 79 (341)
.||+|..++..+... +..+|+++|+|+..++.+++|++.+++. .++++++|+..+..........||.|++||.
T Consensus 260 ~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-----~v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaP 334 (434)
T PRK14901 260 CAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-----SIKILAADSRNLLELKPQWRGYFDRILLDAP 334 (434)
T ss_pred CCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-----eEEEEeCChhhcccccccccccCCEEEEeCC
Confidence 489999999988753 3458999999999999999999999984 5889999998764221111347999999983
Q ss_pred --CC------C------------------HHHHHHHHHhcccCCEEEEEec
Q 019408 80 --GS------D------------------SSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 80 --gs------p------------------~~fld~al~~v~~gGlL~vt~T 104 (341)
|+ | ...++.|.+.|++||.|.. +|
T Consensus 335 CSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvy-st 384 (434)
T PRK14901 335 CSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVY-AT 384 (434)
T ss_pred CCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEE-Ee
Confidence 21 1 2446788999999998775 45
No 47
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.64 E-value=3.7e-07 Score=82.04 Aligned_cols=95 Identities=18% Similarity=0.096 Sum_probs=76.1
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
.||||..++.++......+|+++|+|+++++.+++|++.+++. +++++++|+.+.+... ...+|.|.+|...
T Consensus 48 G~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~-----~v~~~~~d~~~~~~~~---~~~~d~v~~~~~~ 119 (196)
T PRK07402 48 GAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVK-----NVEVIEGSAPECLAQL---APAPDRVCIEGGR 119 (196)
T ss_pred CCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-----CeEEEECchHHHHhhC---CCCCCEEEEECCc
Confidence 4899999999986433468999999999999999999988873 5788999998765432 2357889998643
Q ss_pred CCHHHHHHHHHhcccCCEEEEEe
Q 019408 81 SDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 81 sp~~fld~al~~v~~gGlL~vt~ 103 (341)
....+++.+.+.|++||.+.+..
T Consensus 120 ~~~~~l~~~~~~LkpgG~li~~~ 142 (196)
T PRK07402 120 PIKEILQAVWQYLKPGGRLVATA 142 (196)
T ss_pred CHHHHHHHHHHhcCCCeEEEEEe
Confidence 33477888899999999999854
No 48
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.63 E-value=1.6e-07 Score=85.64 Aligned_cols=99 Identities=15% Similarity=0.143 Sum_probs=79.8
Q ss_pred ccccHhHHHHhhhC-CCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcC--CcccEEEeCC
Q 019408 2 CGCGIRSLRYLAEA-KADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKR--EFFDLIDIDS 78 (341)
Q Consensus 2 agsG~rgir~a~e~-ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~--~~fDvIdlDP 78 (341)
+++|.=+|..|... .-.+|+.+|+|++-.+.+++|++..++. ++++++.+||.++|.++...+ ..||+||+|-
T Consensus 54 t~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~----~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa 129 (205)
T PF01596_consen 54 TFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLD----DRIEVIEGDALEVLPELANDGEEGQFDFVFIDA 129 (205)
T ss_dssp TTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGG----GGEEEEES-HHHHHHHHHHTTTTTSEEEEEEES
T ss_pred cccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCC----CcEEEEEeccHhhHHHHHhccCCCceeEEEEcc
Confidence 46788888888752 2358999999999999999999999885 789999999999998875443 3799999997
Q ss_pred C-CCCHHHHHHHHHhcccCCEEEEEec
Q 019408 79 F-GSDSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 79 y-gsp~~fld~al~~v~~gGlL~vt~T 104 (341)
- ..-..|++.++++|++||+|++--+
T Consensus 130 ~K~~y~~y~~~~~~ll~~ggvii~DN~ 156 (205)
T PF01596_consen 130 DKRNYLEYFEKALPLLRPGGVIIADNV 156 (205)
T ss_dssp TGGGHHHHHHHHHHHEEEEEEEEEETT
T ss_pred cccchhhHHHHHhhhccCCeEEEEccc
Confidence 2 1123678899999999999997543
No 49
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.63 E-value=9.7e-08 Score=83.95 Aligned_cols=75 Identities=17% Similarity=0.224 Sum_probs=56.3
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
|||.|.-.|-+|+. .++|+++|+|+.-++.+++|++.-|+. ++++++++|+++++...... ..||+|++|| .
T Consensus 7 fcG~GGNtIqFA~~--~~~Viaidid~~~~~~a~hNa~vYGv~----~~I~~i~gD~~~~~~~~~~~-~~~D~vFlSPPW 79 (163)
T PF09445_consen 7 FCGVGGNTIQFART--FDRVIAIDIDPERLECAKHNAEVYGVA----DNIDFICGDFFELLKRLKSN-KIFDVVFLSPPW 79 (163)
T ss_dssp T-TTSHHHHHHHHT--T-EEEEEES-HHHHHHHHHHHHHTT-G----GGEEEEES-HHHHGGGB-------SEEEE---B
T ss_pred ccCcCHHHHHHHHh--CCeEEEEECCHHHHHHHHHHHHHcCCC----CcEEEEeCCHHHHHhhcccc-ccccEEEECCCC
Confidence 79999999999984 578999999999999999999999985 78999999999988765322 2289999999 7
Q ss_pred CCC
Q 019408 80 GSD 82 (341)
Q Consensus 80 gsp 82 (341)
|-|
T Consensus 80 GGp 82 (163)
T PF09445_consen 80 GGP 82 (163)
T ss_dssp SSG
T ss_pred CCc
Confidence 765
No 50
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.62 E-value=1.5e-07 Score=91.43 Aligned_cols=93 Identities=20% Similarity=0.198 Sum_probs=74.8
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
|||||...++++. .| .+|+++|+|+.+++..++|++.+++. .+++.++|+.++- .....||+|+.|| |
T Consensus 190 ~cGtG~~lieaa~-~~-~~v~g~Di~~~~~~~a~~nl~~~g~~-----~i~~~~~D~~~l~----~~~~~~D~Iv~dPPy 258 (329)
T TIGR01177 190 FCGTGGFLIEAGL-MG-AKVIGCDIDWKMVAGARINLEHYGIE-----DFFVKRGDATKLP----LSSESVDAIATDPPY 258 (329)
T ss_pred CCCCCHHHHHHHH-hC-CeEEEEcCCHHHHHHHHHHHHHhCCC-----CCeEEecchhcCC----cccCCCCEEEECCCC
Confidence 7999999999887 55 46999999999999999999998884 3778899998642 1235899999998 8
Q ss_pred CCC------------HHHHHHHHHhcccCCEEEEEec
Q 019408 80 GSD------------SSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 80 gsp------------~~fld~al~~v~~gGlL~vt~T 104 (341)
|.. ..+++.+.+.+++||.+++..+
T Consensus 259 g~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~ 295 (329)
T TIGR01177 259 GRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP 295 (329)
T ss_pred cCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEc
Confidence 742 2456677889999999987443
No 51
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.62 E-value=2.4e-07 Score=82.52 Aligned_cols=91 Identities=22% Similarity=0.119 Sum_probs=73.8
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
||||..++.+++.....+|+++|+|+.+++.+++|++.+++. ++++.++|+...+ ...||+|+++- .+
T Consensus 40 ~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~-----~i~~~~~d~~~~~------~~~~D~v~~~~~~~ 108 (187)
T PRK08287 40 AGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG-----NIDIIPGEAPIEL------PGKADAIFIGGSGG 108 (187)
T ss_pred CcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-----CeEEEecCchhhc------CcCCCEEEECCCcc
Confidence 799999999998533468999999999999999999988873 5788889975322 24799999986 33
Q ss_pred CCHHHHHHHHHhcccCCEEEEEe
Q 019408 81 SDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 81 sp~~fld~al~~v~~gGlL~vt~ 103 (341)
....+++.+.+.|++||.+.+..
T Consensus 109 ~~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 109 NLTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred CHHHHHHHHHHhcCCCeEEEEEE
Confidence 34567888999999999998743
No 52
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.59 E-value=2.4e-07 Score=82.02 Aligned_cols=88 Identities=20% Similarity=0.222 Sum_probs=71.1
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
||+|..++.++. .+. +|+++|+|+.+++.+++|++.+++ .+++.++|+.+.+ ..+||+|+.+| |.
T Consensus 28 ~G~G~~~~~l~~-~~~-~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~d~~~~~------~~~fD~Vi~n~p~~ 93 (179)
T TIGR00537 28 AGTGLVAIRLKG-KGK-CILTTDINPFAVKELRENAKLNNV------GLDVVMTDLFKGV------RGKFDVILFNPPYL 93 (179)
T ss_pred CChhHHHHHHHh-cCC-EEEEEECCHHHHHHHHHHHHHcCC------ceEEEEccccccc------CCcccEEEECCCCC
Confidence 799999999987 566 899999999999999999998876 4678899986643 23799999997 63
Q ss_pred CC------------------------HHHHHHHHHhcccCCEEEEEe
Q 019408 81 SD------------------------SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 81 sp------------------------~~fld~al~~v~~gGlL~vt~ 103 (341)
.. ..|++.+.+.|++||.+.+..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~ 140 (179)
T TIGR00537 94 PLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQ 140 (179)
T ss_pred CCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEE
Confidence 21 135777889999999988744
No 53
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.59 E-value=5.2e-07 Score=91.04 Aligned_cols=95 Identities=17% Similarity=0.243 Sum_probs=74.3
Q ss_pred CccccHhHHHHhhhC-CCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-
Q 019408 1 MCGCGIRSLRYLAEA-KADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS- 78 (341)
Q Consensus 1 fagsG~rgir~a~e~-ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP- 78 (341)
.||+|..++..+... +..+|+++|+|+..++.+++|++..++. .+++.+.|+..+.... .+.||.|++||
T Consensus 245 cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-----~v~~~~~Da~~l~~~~---~~~fD~Vl~DaP 316 (431)
T PRK14903 245 CAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-----SIEIKIADAERLTEYV---QDTFDRILVDAP 316 (431)
T ss_pred CCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----eEEEEECchhhhhhhh---hccCCEEEECCC
Confidence 489999998887642 3468999999999999999999999883 5788999998764221 34799999998
Q ss_pred ---CCC----C------------------HHHHHHHHHhcccCCEEEEEec
Q 019408 79 ---FGS----D------------------SSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 79 ---ygs----p------------------~~fld~al~~v~~gGlL~vt~T 104 (341)
+|. | ...++.+.+.|++||.|.. +|
T Consensus 317 Csg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvY-sT 366 (431)
T PRK14903 317 CTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLY-ST 366 (431)
T ss_pred CCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEE-EE
Confidence 232 1 1236688899999999876 66
No 54
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.57 E-value=3e-07 Score=91.08 Aligned_cols=95 Identities=17% Similarity=0.162 Sum_probs=73.9
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
||+|+.|+.+++.....+|+++|+|+.|++..++|++.|+.. ...++++...|+...+ .+.+||+|+.+| |.
T Consensus 237 CGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~--~~~~v~~~~~D~l~~~-----~~~~fDlIlsNPPfh 309 (378)
T PRK15001 237 CGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPE--ALDRCEFMINNALSGV-----EPFRFNAVLCNPPFH 309 (378)
T ss_pred ccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcc--cCceEEEEEccccccC-----CCCCEEEEEECcCcc
Confidence 799999999998533468999999999999999999998752 0135778888886432 234799999998 63
Q ss_pred CC--------HHHHHHHHHhcccCCEEEEEe
Q 019408 81 SD--------SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 81 sp--------~~fld~al~~v~~gGlL~vt~ 103 (341)
.- ..++..+.+.|++||.|++..
T Consensus 310 ~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 310 QQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred cCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 21 245677889999999999854
No 55
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.55 E-value=5.2e-07 Score=90.84 Aligned_cols=95 Identities=22% Similarity=0.185 Sum_probs=74.0
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
.||+|..++..+...+..+|+++|+|+..++.+++|++.+++ .++++++|+...... .....||.|++|| +
T Consensus 252 gaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~------~~~~~~~D~~~~~~~--~~~~~fD~Vl~D~Pc 323 (427)
T PRK10901 252 CAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL------KATVIVGDARDPAQW--WDGQPFDRILLDAPC 323 (427)
T ss_pred CCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC------CeEEEEcCcccchhh--cccCCCCEEEECCCC
Confidence 489999999998743236899999999999999999999887 256889999865321 1235799999999 3
Q ss_pred -CC--------------C----------HHHHHHHHHhcccCCEEEEEec
Q 019408 80 -GS--------------D----------SSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 80 -gs--------------p----------~~fld~al~~v~~gGlL~vt~T 104 (341)
++ + ..+++.|.+.|++||.|.. +|
T Consensus 324 s~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvy-st 372 (427)
T PRK10901 324 SATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLY-AT 372 (427)
T ss_pred CcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEE-Ee
Confidence 21 0 1467788999999999986 55
No 56
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=3.7e-07 Score=87.03 Aligned_cols=92 Identities=22% Similarity=0.171 Sum_probs=71.1
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
+|||..+|..+++.....|+++|+|++|++++++|++.|++. ++.+++.|.+.-+. .+||+|+-.| |-
T Consensus 119 TGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~-----~~~~~~~dlf~~~~------~~fDlIVsNPPYi 187 (280)
T COG2890 119 TGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLV-----RVLVVQSDLFEPLR------GKFDLIVSNPPYI 187 (280)
T ss_pred CChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCc-----cEEEEeeecccccC------CceeEEEeCCCCC
Confidence 799999999999755568999999999999999999999973 45556667775443 2899999998 75
Q ss_pred CCH----------------------------HHHHHHHHhcccCCEEEEEec
Q 019408 81 SDS----------------------------SFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 81 sp~----------------------------~fld~al~~v~~gGlL~vt~T 104 (341)
... .|++.+-+.+++||++.+...
T Consensus 188 p~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 188 PAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred CCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence 322 122355677889999998653
No 57
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.54 E-value=5.7e-08 Score=93.21 Aligned_cols=86 Identities=22% Similarity=0.190 Sum_probs=63.2
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEe-ccHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTH-FDANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~-~DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
+|||++||-+++ .||++|+++|+||.|++..++|+++|++. +++.+.. .|. ...+||+|.-.=..
T Consensus 170 ~GSGILaiaA~k-lGA~~v~a~DiDp~Av~~a~~N~~~N~~~----~~~~v~~~~~~---------~~~~~dlvvANI~~ 235 (295)
T PF06325_consen 170 CGSGILAIAAAK-LGAKKVVAIDIDPLAVEAARENAELNGVE----DRIEVSLSEDL---------VEGKFDLVVANILA 235 (295)
T ss_dssp -TTSHHHHHHHH-TTBSEEEEEESSCHHHHHHHHHHHHTT-T----TCEEESCTSCT---------CCS-EEEEEEES-H
T ss_pred CcHHHHHHHHHH-cCCCeEEEecCCHHHHHHHHHHHHHcCCC----eeEEEEEeccc---------ccccCCEEEECCCH
Confidence 799999999999 79999999999999999999999999995 4555431 121 12689999876533
Q ss_pred CC-HHHHHHHHHhcccCCEEEE
Q 019408 81 SD-SSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 81 sp-~~fld~al~~v~~gGlL~v 101 (341)
.+ ...++...+.+++||+|.+
T Consensus 236 ~vL~~l~~~~~~~l~~~G~lIl 257 (295)
T PF06325_consen 236 DVLLELAPDIASLLKPGGYLIL 257 (295)
T ss_dssp HHHHHHHHHCHHHEEEEEEEEE
T ss_pred HHHHHHHHHHHHhhCCCCEEEE
Confidence 21 1233444578999999998
No 58
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.53 E-value=5.7e-07 Score=91.04 Aligned_cols=93 Identities=18% Similarity=0.106 Sum_probs=73.8
Q ss_pred CccccHhHHHHhhh-CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-
Q 019408 1 MCGCGIRSLRYLAE-AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS- 78 (341)
Q Consensus 1 fagsG~rgir~a~e-~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP- 78 (341)
.||+|..++..+.. .+..+|+++|+|+..++.+++|++.+++. .+++.++|+..+. ....||+|++||
T Consensus 258 gaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-----~v~~~~~Da~~~~-----~~~~fD~Vl~D~P 327 (445)
T PRK14904 258 CAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-----IIETIEGDARSFS-----PEEQPDAILLDAP 327 (445)
T ss_pred CCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-----eEEEEeCcccccc-----cCCCCCEEEEcCC
Confidence 48999998877653 23458999999999999999999999883 6788999998764 235799999997
Q ss_pred C-CC------C------------------HHHHHHHHHhcccCCEEEEEec
Q 019408 79 F-GS------D------------------SSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 79 y-gs------p------------------~~fld~al~~v~~gGlL~vt~T 104 (341)
+ |+ | ..+++.+.+.|++||.|.. +|
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvy-st 377 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVY-AT 377 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEE-Ee
Confidence 2 21 1 1357788899999999997 66
No 59
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.52 E-value=8.7e-07 Score=83.07 Aligned_cols=96 Identities=17% Similarity=0.115 Sum_probs=78.3
Q ss_pred ccccHhHHHHhhhCC-CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhc---CCcccEEEeC
Q 019408 2 CGCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLK---REFFDLIDID 77 (341)
Q Consensus 2 agsG~rgir~a~e~g-a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~---~~~fDvIdlD 77 (341)
.++|.-+|..|+..+ -.+|+.+|.+++..+..++|++..++. ++++++.+||.+.|.++... ...||+||+|
T Consensus 88 T~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~----~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiD 163 (247)
T PLN02589 88 VYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVA----HKIDFREGPALPVLDQMIEDGKYHGTFDFIFVD 163 (247)
T ss_pred ChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC----CceEEEeccHHHHHHHHHhccccCCcccEEEec
Confidence 367888888876422 248999999999999999999999985 68999999999999886433 2589999999
Q ss_pred CC-CCCHHHHHHHHHhcccCCEEEE
Q 019408 78 SF-GSDSSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 78 Py-gsp~~fld~al~~v~~gGlL~v 101 (341)
-- ..-..|++.++++|++||+|++
T Consensus 164 adK~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 164 ADKDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred CCHHHhHHHHHHHHHhcCCCeEEEE
Confidence 72 2223788999999999999986
No 60
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.52 E-value=4.6e-07 Score=86.60 Aligned_cols=90 Identities=21% Similarity=0.159 Sum_probs=70.7
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
||||+.++.+++ .|+.+|+++|+|+.+++.+++|++.|++. ..+.+...|... ....+||+|+.+....
T Consensus 168 cGsG~lai~aa~-~g~~~V~avDid~~al~~a~~n~~~n~~~----~~~~~~~~~~~~------~~~~~fDlVvan~~~~ 236 (288)
T TIGR00406 168 CGSGILSIAALK-LGAAKVVGIDIDPLAVESARKNAELNQVS----DRLQVKLIYLEQ------PIEGKADVIVANILAE 236 (288)
T ss_pred CChhHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHHcCCC----cceEEEeccccc------ccCCCceEEEEecCHH
Confidence 799999999887 78889999999999999999999999884 455666665221 1135799999987432
Q ss_pred C-HHHHHHHHHhcccCCEEEEE
Q 019408 82 D-SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 82 p-~~fld~al~~v~~gGlL~vt 102 (341)
. ..++..+.+.|++||.|.+.
T Consensus 237 ~l~~ll~~~~~~LkpgG~li~s 258 (288)
T TIGR00406 237 VIKELYPQFSRLVKPGGWLILS 258 (288)
T ss_pred HHHHHHHHHHHHcCCCcEEEEE
Confidence 2 24566778999999999974
No 61
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.51 E-value=7.1e-07 Score=82.39 Aligned_cols=92 Identities=21% Similarity=0.138 Sum_probs=74.2
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
||+|..++.++......+|+++|+|+.+++.+++|++.+++. ++++.++|+...+ ..++||+|+.+| |.
T Consensus 96 ~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-----~~~~~~~d~~~~~-----~~~~fD~Vi~npPy~ 165 (251)
T TIGR03534 96 TGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-----NVTFLQSDWFEPL-----PGGKFDLIVSNPPYI 165 (251)
T ss_pred CcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----eEEEEECchhccC-----cCCceeEEEECCCCC
Confidence 799999999998644458999999999999999999998873 5788999987643 235899999998 65
Q ss_pred CC-----------------------------HHHHHHHHHhcccCCEEEEEe
Q 019408 81 SD-----------------------------SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 81 sp-----------------------------~~fld~al~~v~~gGlL~vt~ 103 (341)
.. ..++..+.+.|++||.+++..
T Consensus 166 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 166 PEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred chhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 31 134567788999999999854
No 62
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.50 E-value=6.3e-07 Score=92.14 Aligned_cols=92 Identities=22% Similarity=0.216 Sum_probs=72.4
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
+|||..++..+++....+|+++|+|+.|++.+++|++.+++. ++++++++|+...+. ..+||+|+.+| |.
T Consensus 147 ~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~----~~v~~~~~D~~~~~~-----~~~fDlIvsNPPYi 217 (506)
T PRK01544 147 TGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVT----DRIQIIHSNWFENIE-----KQKFDFIVSNPPYI 217 (506)
T ss_pred CchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCc----cceeeeecchhhhCc-----CCCccEEEECCCCC
Confidence 799999999988644568999999999999999999999874 468889999875431 34799999998 65
Q ss_pred CCHH-----------------------------HHHHHHHhcccCCEEEEE
Q 019408 81 SDSS-----------------------------FLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 81 sp~~-----------------------------fld~al~~v~~gGlL~vt 102 (341)
.... +++.+-+.|++||.|.+.
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE 268 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE 268 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 3211 223555789999999884
No 63
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.50 E-value=1.3e-06 Score=80.28 Aligned_cols=94 Identities=20% Similarity=0.215 Sum_probs=77.1
Q ss_pred ccccHhHHHHhhhCC-CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEe-ccHHHHHHHhhhcCCcccEEEeCC-
Q 019408 2 CGCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTH-FDANRVLSECYLKREFFDLIDIDS- 78 (341)
Q Consensus 2 agsG~rgir~a~e~g-a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~-~DA~~~l~~~~~~~~~fDvIdlDP- 78 (341)
++.|.=+|..|.+.. -.++|.+|+|++-.+.+++|++.-++. ++++++. +|+.+.|.. .....||+||+|-
T Consensus 68 T~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~----~~i~~~~~gdal~~l~~--~~~~~fDliFIDad 141 (219)
T COG4122 68 TAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVD----DRIELLLGGDALDVLSR--LLDGSFDLVFIDAD 141 (219)
T ss_pred cccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCc----ceEEEEecCcHHHHHHh--ccCCCccEEEEeCC
Confidence 367888899998733 458999999999999999999999985 5677777 699999986 2246899999996
Q ss_pred CCCCHHHHHHHHHhcccCCEEEE
Q 019408 79 FGSDSSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 79 ygsp~~fld~al~~v~~gGlL~v 101 (341)
=+.-.+|++.++++|++||++.+
T Consensus 142 K~~yp~~le~~~~lLr~GGliv~ 164 (219)
T COG4122 142 KADYPEYLERALPLLRPGGLIVA 164 (219)
T ss_pred hhhCHHHHHHHHHHhCCCcEEEE
Confidence 11112899999999999999996
No 64
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.50 E-value=4.4e-07 Score=88.90 Aligned_cols=91 Identities=16% Similarity=0.174 Sum_probs=73.1
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
||+|..++.+++.....+|+++|+|+.|++.+++|++.|++. .++...|+...+ .++||+|+.+| |.
T Consensus 205 CG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~------~~~~~~D~~~~~------~~~fDlIvsNPPFH 272 (342)
T PRK09489 205 CGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE------GEVFASNVFSDI------KGRFDMIISNPPFH 272 (342)
T ss_pred cCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC------CEEEEccccccc------CCCccEEEECCCcc
Confidence 799999999988533357999999999999999999999873 356777875422 35799999998 64
Q ss_pred C--------CHHHHHHHHHhcccCCEEEEEec
Q 019408 81 S--------DSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 81 s--------p~~fld~al~~v~~gGlL~vt~T 104 (341)
. ...|+..+.+.|++||.|.+.+.
T Consensus 273 ~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 273 DGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred CCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 3 24677888999999999998664
No 65
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.48 E-value=3.2e-07 Score=78.88 Aligned_cols=95 Identities=19% Similarity=0.282 Sum_probs=76.1
Q ss_pred ccccHhHHHHhhh-CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC--
Q 019408 2 CGCGIRSLRYLAE-AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-- 78 (341)
Q Consensus 2 agsG~rgir~a~e-~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-- 78 (341)
||+|..++.++.+ ....+++.+|+|+++++.++++++.++++ ++++.++|+.+ +... .. +.||+|+.++
T Consensus 12 cG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-----ni~~~~~d~~~-l~~~-~~-~~~D~I~~~~~l 83 (152)
T PF13847_consen 12 CGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-----NIEFIQGDIED-LPQE-LE-EKFDIIISNGVL 83 (152)
T ss_dssp -TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-----TEEEEESBTTC-GCGC-SS-TTEEEEEEESTG
T ss_pred CcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-----ccceEEeehhc-cccc-cC-CCeeEEEEcCch
Confidence 7999999999954 33567999999999999999999999883 78999999988 5432 11 5899999987
Q ss_pred --CCCCHHHHHHHHHhcccCCEEEEEec
Q 019408 79 --FGSDSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 79 --ygsp~~fld~al~~v~~gGlL~vt~T 104 (341)
+..+..++..+.+.++++|.++++..
T Consensus 84 ~~~~~~~~~l~~~~~~lk~~G~~i~~~~ 111 (152)
T PF13847_consen 84 HHFPDPEKVLKNIIRLLKPGGILIISDP 111 (152)
T ss_dssp GGTSHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhccCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 33344568889999999999998553
No 66
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.48 E-value=2.1e-06 Score=77.85 Aligned_cols=96 Identities=15% Similarity=0.103 Sum_probs=74.5
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEe---CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDI---DS 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdl---DP 78 (341)
||+|..++..+......+|+++|+|+++++.+++|++.+++. +++++++|+...+... .....||+|++ ||
T Consensus 49 cGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~-----~v~~~~~d~~~~l~~~-~~~~~~D~V~~~~~~p 122 (202)
T PRK00121 49 FGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLT-----NLRLLCGDAVEVLLDM-FPDGSLDRIYLNFPDP 122 (202)
T ss_pred cCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCC-----CEEEEecCHHHHHHHH-cCccccceEEEECCCC
Confidence 799999998876423357999999999999999999988763 6889999994444322 12457999988 66
Q ss_pred CCC---------CHHHHHHHHHhcccCCEEEEEe
Q 019408 79 FGS---------DSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 ygs---------p~~fld~al~~v~~gGlL~vt~ 103 (341)
+.. ...++..+.+.|++||.+.+++
T Consensus 123 ~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 123 WPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred CCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 532 2368889999999999999843
No 67
>PRK03612 spermidine synthase; Provisional
Probab=98.47 E-value=2.3e-06 Score=88.29 Aligned_cols=99 Identities=24% Similarity=0.189 Sum_probs=74.7
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCC--CCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERG--SGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSF 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~--~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPy 79 (341)
+|+|....+.++..++++|+++|+|++.++..++|..+..+. .-++.+++++++|+++++... +++||+|++|+.
T Consensus 306 ~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~---~~~fDvIi~D~~ 382 (521)
T PRK03612 306 GGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL---AEKFDVIIVDLP 382 (521)
T ss_pred CCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC---CCCCCEEEEeCC
Confidence 588998888877434589999999999999999975432210 001246889999999998753 458999999973
Q ss_pred CC--C-------HHHHHHHHHhcccCCEEEEEe
Q 019408 80 GS--D-------SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 gs--p-------~~fld~al~~v~~gGlL~vt~ 103 (341)
-. + .+|++.+.+.|++||++.+.+
T Consensus 383 ~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 383 DPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred CCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 21 1 247888899999999999854
No 68
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.45 E-value=1.6e-06 Score=77.91 Aligned_cols=99 Identities=15% Similarity=0.202 Sum_probs=78.4
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeC---C
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDID---S 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlD---P 78 (341)
||+|..++.++.......|+++|+++..++.+++|++.+++. +++++++|+.+++.... ....+|.|+++ |
T Consensus 25 cG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-----ni~~i~~d~~~~~~~~~-~~~~~d~v~~~~pdp 98 (194)
T TIGR00091 25 CGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-----NLHVLCGDANELLDKFF-PDGSLSKVFLNFPDP 98 (194)
T ss_pred CCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-----CEEEEccCHHHHHHhhC-CCCceeEEEEECCCc
Confidence 799999999998633457999999999999999999988873 68899999998875432 23479999875 5
Q ss_pred CCCC---------HHHHHHHHHhcccCCEEEEEecCCC
Q 019408 79 FGSD---------SSFLRTVFNAVKRDGLLYLTSTDGY 107 (341)
Q Consensus 79 ygsp---------~~fld~al~~v~~gGlL~vt~TD~~ 107 (341)
+-+. ..++..+.+.|++||.|.+ .||..
T Consensus 99 w~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~-~td~~ 135 (194)
T TIGR00091 99 WPKKRHNKRRITQPHFLKEYANVLKKGGVIHF-KTDNE 135 (194)
T ss_pred CCCCCccccccCCHHHHHHHHHHhCCCCEEEE-EeCCH
Confidence 3211 3688899999999999997 66553
No 69
>PLN02823 spermine synthase
Probab=98.44 E-value=1.6e-06 Score=84.79 Aligned_cols=99 Identities=21% Similarity=0.171 Sum_probs=74.4
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeC---C
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDID---S 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlD---P 78 (341)
.|.|....++++..++.+|+++|+|++.++++++++..++-.. ++.+++++.+|++.+|... +++||+|++| |
T Consensus 112 gG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~-~dprv~v~~~Da~~~L~~~---~~~yDvIi~D~~dp 187 (336)
T PLN02823 112 GGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAF-CDKRLELIINDARAELEKR---DEKFDVIIGDLADP 187 (336)
T ss_pred CCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccc-cCCceEEEEChhHHHHhhC---CCCccEEEecCCCc
Confidence 3667766666664568899999999999999999987653100 1257899999999999643 4689999999 4
Q ss_pred C--CCC-----HHHHH-HHHHhcccCCEEEEEec
Q 019408 79 F--GSD-----SSFLR-TVFNAVKRDGLLYLTST 104 (341)
Q Consensus 79 y--gsp-----~~fld-~al~~v~~gGlL~vt~T 104 (341)
. +.| .+|++ .+.+.|++||++.+.++
T Consensus 188 ~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~ 221 (336)
T PLN02823 188 VEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAG 221 (336)
T ss_pred cccCcchhhccHHHHHHHHHHhcCCCcEEEEecc
Confidence 2 212 25777 77889999999987554
No 70
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.44 E-value=8.2e-07 Score=84.78 Aligned_cols=92 Identities=18% Similarity=0.194 Sum_probs=75.2
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
||-|+.||.+++...-.+|+++|+|..|+++.++|++.|+++ ..++...|.+.-.. .+||+|+..| |.
T Consensus 167 CG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~-----~~~v~~s~~~~~v~------~kfd~IisNPPfh 235 (300)
T COG2813 167 CGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVE-----NTEVWASNLYEPVE------GKFDLIISNPPFH 235 (300)
T ss_pred CCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCC-----ccEEEEeccccccc------ccccEEEeCCCcc
Confidence 799999999999755678999999999999999999999984 22677877765432 3899999999 53
Q ss_pred C--C------HHHHHHHHHhcccCCEEEEEec
Q 019408 81 S--D------SSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 81 s--p------~~fld~al~~v~~gGlL~vt~T 104 (341)
. . ..++..|-+.|++||-|.+-+-
T Consensus 236 ~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 236 AGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred CCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 2 1 2567788999999999998664
No 71
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.44 E-value=1.2e-06 Score=87.51 Aligned_cols=70 Identities=17% Similarity=0.091 Sum_probs=56.8
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
||||..++..+++....+|+++|+|+.+++.+++|++.++. ++++.++|.+.... ....+||+|+.+| |.
T Consensus 260 cGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~------rV~fi~gDl~e~~l---~~~~~FDLIVSNPPYI 330 (423)
T PRK14966 260 TGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA------RVEFAHGSWFDTDM---PSEGKWDIIVSNPPYI 330 (423)
T ss_pred ChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC------cEEEEEcchhcccc---ccCCCccEEEECCCCC
Confidence 79999999998865567899999999999999999998764 57889999865321 1124799999999 63
No 72
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.43 E-value=1.8e-06 Score=77.07 Aligned_cols=95 Identities=22% Similarity=0.286 Sum_probs=66.4
Q ss_pred CccccHhHHHHhhh-CCCC--------EEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcc
Q 019408 1 MCGCGIRSLRYLAE-AKAD--------FVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFF 71 (341)
Q Consensus 1 fagsG~rgir~a~e-~ga~--------~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~f 71 (341)
|||||..-||++.. .+.. +++..|+|+++++..++|++..++. ..+.+.+.|+.++- .....+
T Consensus 36 ~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~----~~i~~~~~D~~~l~----~~~~~~ 107 (179)
T PF01170_consen 36 FCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVE----DYIDFIQWDARELP----LPDGSV 107 (179)
T ss_dssp T-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-C----GGEEEEE--GGGGG----GTTSBS
T ss_pred CCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccC----CceEEEecchhhcc----cccCCC
Confidence 89999999999885 3333 3889999999999999999998884 57888999998764 223579
Q ss_pred cEEEeCC-CCCCH-----------HHHHHHHHhcccCCEEEEEec
Q 019408 72 DLIDIDS-FGSDS-----------SFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 72 DvIdlDP-ygsp~-----------~fld~al~~v~~gGlL~vt~T 104 (341)
|+|+.|| ||.-. .|++..-+.+++ ..+.++..
T Consensus 108 d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~ 151 (179)
T PF01170_consen 108 DAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTS 151 (179)
T ss_dssp CEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEES
T ss_pred CEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEEC
Confidence 9999999 98632 122343444555 66666554
No 73
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.41 E-value=9.8e-07 Score=82.53 Aligned_cols=84 Identities=19% Similarity=0.127 Sum_probs=66.3
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
||||+.++.+++ .|+.+|+++|+|+.+++.+++|++.|++. ..+.+..+|. .||+|+.+....
T Consensus 128 cGsG~l~i~~~~-~g~~~v~giDis~~~l~~A~~n~~~~~~~----~~~~~~~~~~------------~fD~Vvani~~~ 190 (250)
T PRK00517 128 CGSGILAIAAAK-LGAKKVLAVDIDPQAVEAARENAELNGVE----LNVYLPQGDL------------KADVIVANILAN 190 (250)
T ss_pred CcHHHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHHcCCC----ceEEEccCCC------------CcCEEEEcCcHH
Confidence 799999998776 68888999999999999999999999873 3444444332 699999876332
Q ss_pred -CHHHHHHHHHhcccCCEEEEE
Q 019408 82 -DSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 82 -p~~fld~al~~v~~gGlL~vt 102 (341)
...++..+.+.|++||.|+++
T Consensus 191 ~~~~l~~~~~~~LkpgG~lils 212 (250)
T PRK00517 191 PLLELAPDLARLLKPGGRLILS 212 (250)
T ss_pred HHHHHHHHHHHhcCCCcEEEEE
Confidence 224567788999999999985
No 74
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.41 E-value=8e-07 Score=87.39 Aligned_cols=93 Identities=23% Similarity=0.213 Sum_probs=62.1
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhh------------hcC
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECY------------LKR 68 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~------------~~~ 68 (341)
|||+|.+||-.|. .+++|+++|+++.|++.+++|+++|+++ ++++++++|.++..... ...
T Consensus 204 ycG~G~fsl~la~--~~~~V~gvE~~~~av~~A~~Na~~N~i~-----n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 276 (352)
T PF05958_consen 204 YCGVGTFSLPLAK--KAKKVIGVEIVEEAVEDARENAKLNGID-----NVEFIRGDAEDFAKALAKAREFNRLKGIDLKS 276 (352)
T ss_dssp S-TTTCCHHHHHC--CSSEEEEEES-HHHHHHHHHHHHHTT-------SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGC
T ss_pred eecCCHHHHHHHh--hCCeEEEeeCCHHHHHHHHHHHHHcCCC-----cceEEEeeccchhHHHHhhHHHHhhhhhhhhh
Confidence 7999999999986 6789999999999999999999999994 78889988877643221 123
Q ss_pred CcccEEEeCCC--CCCHHHHHHHHHhcccCCEEEEEe
Q 019408 69 EFFDLIDIDSF--GSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 69 ~~fDvIdlDPy--gsp~~fld~al~~v~~gGlL~vt~ 103 (341)
..+|+|++||- |-....++. ++.++ -+++|.|
T Consensus 277 ~~~d~vilDPPR~G~~~~~~~~-~~~~~--~ivYvSC 310 (352)
T PF05958_consen 277 FKFDAVILDPPRAGLDEKVIEL-IKKLK--RIVYVSC 310 (352)
T ss_dssp TTESEEEE---TT-SCHHHHHH-HHHSS--EEEEEES
T ss_pred cCCCEEEEcCCCCCchHHHHHH-HhcCC--eEEEEEC
Confidence 36899999993 322234443 44444 4888844
No 75
>PRK01581 speE spermidine synthase; Validated
Probab=98.41 E-value=7.9e-06 Score=80.38 Aligned_cols=129 Identities=16% Similarity=0.075 Sum_probs=85.7
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHH---cCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKS---IERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~---n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP 78 (341)
+|+|....+.++..++.+|+++|+|++.+++++++-.+ ++.. .++.+++++.+|+.+++... .++||+|++|+
T Consensus 159 gGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~-~~DpRV~vvi~Da~~fL~~~---~~~YDVIIvDl 234 (374)
T PRK01581 159 GGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSA-FFDNRVNVHVCDAKEFLSSP---SSLYDVIIIDF 234 (374)
T ss_pred CCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhcccc-CCCCceEEEECcHHHHHHhc---CCCccEEEEcC
Confidence 46676444444424578999999999999999974221 2110 01357899999999999753 45799999996
Q ss_pred CC---CC------HHHHHHHHHhcccCCEEEEEecCCCCCCCCCchhHHhhhccccCCCCCchhhhHHHHHHHHHHHHHh
Q 019408 79 FG---SD------SSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREASA 149 (341)
Q Consensus 79 yg---sp------~~fld~al~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~~~~~~E~~lR~ll~~i~~~Aa~ 149 (341)
+- .+ .+|+..+.+.|++||++.+.+. + | ..+ +..+..+.+...+
T Consensus 235 ~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~-----s--------------p----~~~----~~~~~~i~~tL~~ 287 (374)
T PRK01581 235 PDPATELLSTLYTSELFARIATFLTEDGAFVCQSN-----S--------------P----ADA----PLVYWSIGNTIEH 287 (374)
T ss_pred CCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC-----C--------------h----hhh----HHHHHHHHHHHHH
Confidence 32 11 3578888899999999987542 1 0 011 2344446666666
Q ss_pred cCCcEEEEEecc
Q 019408 150 QGYHVSPLFSYY 161 (341)
Q Consensus 150 ~~~~i~Pl~s~~ 161 (341)
.+....|...+.
T Consensus 288 af~~v~~y~t~v 299 (374)
T PRK01581 288 AGLTVKSYHTIV 299 (374)
T ss_pred hCCceEEEEEec
Confidence 677777766664
No 76
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.38 E-value=8.3e-07 Score=82.08 Aligned_cols=90 Identities=24% Similarity=0.235 Sum_probs=72.8
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeC----
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDID---- 77 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlD---- 77 (341)
||-|+++...|. .| ..|+++|++++.++..+.-+..+++ .++..+..+.++... +++||||..=
T Consensus 68 CGgG~Lse~mAr-~G-a~VtgiD~se~~I~~Ak~ha~e~gv------~i~y~~~~~edl~~~----~~~FDvV~cmEVlE 135 (243)
T COG2227 68 CGGGILSEPLAR-LG-ASVTGIDASEKPIEVAKLHALESGV------NIDYRQATVEDLASA----GGQFDVVTCMEVLE 135 (243)
T ss_pred CCccHhhHHHHH-CC-CeeEEecCChHHHHHHHHhhhhccc------cccchhhhHHHHHhc----CCCccEEEEhhHHH
Confidence 688999999999 48 5699999999999999999998887 345567777766543 4799998432
Q ss_pred CCCCCHHHHHHHHHhcccCCEEEEEec
Q 019408 78 SFGSDSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 78 Pygsp~~fld~al~~v~~gGlL~vt~T 104 (341)
-+-.|..|+..+.++||+||++.+ +|
T Consensus 136 Hv~dp~~~~~~c~~lvkP~G~lf~-ST 161 (243)
T COG2227 136 HVPDPESFLRACAKLVKPGGILFL-ST 161 (243)
T ss_pred ccCCHHHHHHHHHHHcCCCcEEEE-ec
Confidence 244567899999999999999998 55
No 77
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.38 E-value=3.7e-06 Score=79.60 Aligned_cols=97 Identities=21% Similarity=0.206 Sum_probs=73.9
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCC--
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSF-- 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPy-- 79 (341)
+|+|..+.++++..++.+|+++|+|++.++.+++++...+.. .+..++++..+|+++++... .++||+|++|++
T Consensus 81 ~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~-~~~~~v~i~~~D~~~~l~~~---~~~yDvIi~D~~~~ 156 (270)
T TIGR00417 81 GGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGS-YDDPRVDLQIDDGFKFLADT---ENTFDVIIVDSTDP 156 (270)
T ss_pred CCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhccc-ccCCceEEEECchHHHHHhC---CCCccEEEEeCCCC
Confidence 578887777776434789999999999999999998643210 01246788899999998754 458999999984
Q ss_pred -CCC-----HHHHHHHHHhcccCCEEEEE
Q 019408 80 -GSD-----SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 80 -gsp-----~~fld~al~~v~~gGlL~vt 102 (341)
+.+ ..|++.+.+.|++||++.+.
T Consensus 157 ~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 157 VGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred CCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 221 36778888999999999974
No 78
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.37 E-value=2e-06 Score=86.52 Aligned_cols=97 Identities=23% Similarity=0.231 Sum_probs=72.2
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC--
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-- 78 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-- 78 (341)
.||+|..++.++...+..+|+++|+|+..++.+++|++.+++. ..+++..+|+..... ......||.|++||
T Consensus 246 cag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~----~~v~~~~~d~~~~~~--~~~~~~fD~VllDaPc 319 (426)
T TIGR00563 246 CAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLT----IKAETKDGDGRGPSQ--WAENEQFDRILLDAPC 319 (426)
T ss_pred CCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCC----eEEEEeccccccccc--cccccccCEEEEcCCC
Confidence 4899999999887444468999999999999999999998873 234446677653321 01235799999997
Q ss_pred --CCC----C------------------HHHHHHHHHhcccCCEEEEEec
Q 019408 79 --FGS----D------------------SSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 79 --ygs----p------------------~~fld~al~~v~~gGlL~vt~T 104 (341)
+|. | ..+++.|.+.|++||.|.. +|
T Consensus 320 Sg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvy-st 368 (426)
T TIGR00563 320 SATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVY-AT 368 (426)
T ss_pred CCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEE-Ee
Confidence 232 1 2467789999999999996 55
No 79
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=8.2e-07 Score=76.23 Aligned_cols=82 Identities=21% Similarity=0.380 Sum_probs=68.7
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
+|+|.+++-++- .+++.|+.+||+|+|+++..+|++...+ ++.+.+.|..++-.. +..||.+++|| ||
T Consensus 57 cgcGmLs~a~sm-~~~e~vlGfDIdpeALEIf~rNaeEfEv------qidlLqcdildle~~----~g~fDtaviNppFG 125 (185)
T KOG3420|consen 57 CGCGMLSIAFSM-PKNESVLGFDIDPEALEIFTRNAEEFEV------QIDLLQCDILDLELK----GGIFDTAVINPPFG 125 (185)
T ss_pred CchhhhHHHhhc-CCCceEEeeecCHHHHHHHhhchHHhhh------hhheeeeeccchhcc----CCeEeeEEecCCCC
Confidence 699999987776 7899999999999999999999998766 346788888776443 46899999999 98
Q ss_pred CC-----HHHHHHHHHhcc
Q 019408 81 SD-----SSFLRTVFNAVK 94 (341)
Q Consensus 81 sp-----~~fld~al~~v~ 94 (341)
+- ..|++.|++.++
T Consensus 126 Tk~~~aDm~fv~~al~~~~ 144 (185)
T KOG3420|consen 126 TKKKGADMEFVSAALKVAS 144 (185)
T ss_pred cccccccHHHHHHHHHHHH
Confidence 73 478889998776
No 80
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.35 E-value=2.2e-06 Score=80.46 Aligned_cols=92 Identities=24% Similarity=0.158 Sum_probs=70.1
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
+|||..++..+......+|+++|+|+.+++.+++|++ ++.. .++++.+.|+...+. ..+||+|+.+| |.
T Consensus 117 ~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~----~~i~~~~~d~~~~~~-----~~~fD~Iv~npPy~ 186 (275)
T PRK09328 117 TGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLG----ARVEFLQGDWFEPLP-----GGRFDLIVSNPPYI 186 (275)
T ss_pred CcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCC----CcEEEEEccccCcCC-----CCceeEEEECCCcC
Confidence 7999999999986445789999999999999999999 3321 467888999854321 35799999998 65
Q ss_pred CC-----------------------------HHHHHHHHHhcccCCEEEEEe
Q 019408 81 SD-----------------------------SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 81 sp-----------------------------~~fld~al~~v~~gGlL~vt~ 103 (341)
.. ..++..+.+.|++||.+.+..
T Consensus 187 ~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 187 PEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred CcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 32 123445568999999999843
No 81
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.34 E-value=4.2e-06 Score=78.25 Aligned_cols=93 Identities=16% Similarity=0.154 Sum_probs=75.3
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||+|..++.++. .| .+|+++|+|+++++.+++|++..++. .+++++++|+.++.... .+.||+|.+.-
T Consensus 53 cG~G~~a~~la~-~g-~~v~~vD~s~~~l~~a~~~~~~~g~~----~~v~~~~~d~~~l~~~~---~~~fD~V~~~~vl~ 123 (255)
T PRK11036 53 GGEGQTAIKLAE-LG-HQVILCDLSAEMIQRAKQAAEAKGVS----DNMQFIHCAAQDIAQHL---ETPVDLILFHAVLE 123 (255)
T ss_pred CCchHHHHHHHH-cC-CEEEEEECCHHHHHHHHHHHHhcCCc----cceEEEEcCHHHHhhhc---CCCCCEEEehhHHH
Confidence 799999999987 46 57999999999999999999988763 46788999998864322 35799998764
Q ss_pred -CCCCHHHHHHHHHhcccCCEEEEEe
Q 019408 79 -FGSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 -ygsp~~fld~al~~v~~gGlL~vt~ 103 (341)
...|..++..+.+.|++||+|.++.
T Consensus 124 ~~~~~~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 124 WVADPKSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred hhCCHHHHHHHHHHHcCCCeEEEEEE
Confidence 1335677889999999999999854
No 82
>PLN02366 spermidine synthase
Probab=98.34 E-value=4.7e-06 Score=80.58 Aligned_cols=99 Identities=17% Similarity=0.160 Sum_probs=73.8
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCC--
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSF-- 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPy-- 79 (341)
+|.|....+.++-.++.+|+++|+|+..+++.++.+...+.. .+..+++++.+|+..++.+. .+++||+|++|.+
T Consensus 100 gG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~-~~dpRv~vi~~Da~~~l~~~--~~~~yDvIi~D~~dp 176 (308)
T PLN02366 100 GGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVG-FDDPRVNLHIGDGVEFLKNA--PEGTYDAIIVDSSDP 176 (308)
T ss_pred CCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccc-cCCCceEEEEChHHHHHhhc--cCCCCCEEEEcCCCC
Confidence 366776666665456789999999999999999998643210 02357899999999999753 2457999999853
Q ss_pred -CCC-----HHHHHHHHHhcccCCEEEEEe
Q 019408 80 -GSD-----SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 -gsp-----~~fld~al~~v~~gGlL~vt~ 103 (341)
+.+ .+|++.+.+.|++||++++.+
T Consensus 177 ~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 177 VGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred CCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 322 257888889999999998644
No 83
>PRK14968 putative methyltransferase; Provisional
Probab=98.33 E-value=3e-06 Score=74.56 Aligned_cols=92 Identities=21% Similarity=0.144 Sum_probs=72.3
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCcc-EEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKR-WVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~-~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
||+|..++..+.. + .+|+++|+|+++++.+++|++.++.. ++ +.+.+.|+.+.+. ...||+|+.+| |
T Consensus 32 ~G~G~~~~~l~~~-~-~~v~~~D~s~~~~~~a~~~~~~~~~~----~~~~~~~~~d~~~~~~-----~~~~d~vi~n~p~ 100 (188)
T PRK14968 32 TGSGIVAIVAAKN-G-KKVVGVDINPYAVECAKCNAKLNNIR----NNGVEVIRSDLFEPFR-----GDKFDVILFNPPY 100 (188)
T ss_pred cccCHHHHHHHhh-c-ceEEEEECCHHHHHHHHHHHHHcCCC----CcceEEEecccccccc-----ccCceEEEECCCc
Confidence 7999999999984 4 67999999999999999999988873 22 6778888765432 23799999987 5
Q ss_pred CC------------------------CHHHHHHHHHhcccCCEEEEEec
Q 019408 80 GS------------------------DSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 80 gs------------------------p~~fld~al~~v~~gGlL~vt~T 104 (341)
.. ...++..+.+.|++||.+++..+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 101 LPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred CCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 42 12367788899999999987553
No 84
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.33 E-value=2.2e-06 Score=78.19 Aligned_cols=90 Identities=13% Similarity=0.168 Sum_probs=70.3
Q ss_pred ccccHhHHHHhhhCC-CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 2 CGCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 2 agsG~rgir~a~e~g-a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
||||..++..+...+ ..+|+++|++++.++.+++|++.+++. ++++.++|+...+.. ...||+|++|+-.
T Consensus 86 ~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~-----~v~~~~~d~~~~~~~----~~~fD~Ii~~~~~ 156 (215)
T TIGR00080 86 TGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLD-----NVIVIVGDGTQGWEP----LAPYDRIYVTAAG 156 (215)
T ss_pred CCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-----CeEEEECCcccCCcc----cCCCCEEEEcCCc
Confidence 799999998877433 246999999999999999999998873 678899999765432 3479999999722
Q ss_pred CCHHHHHHHHHhcccCCEEEEE
Q 019408 81 SDSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 81 sp~~fld~al~~v~~gGlL~vt 102 (341)
. ...+...+.|++||.|++.
T Consensus 157 ~--~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 157 P--KIPEALIDQLKEGGILVMP 176 (215)
T ss_pred c--cccHHHHHhcCcCcEEEEE
Confidence 1 2334567889999999873
No 85
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.31 E-value=5e-06 Score=84.69 Aligned_cols=95 Identities=24% Similarity=0.296 Sum_probs=74.8
Q ss_pred CccccHhHHHHhhhC-CCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCC
Q 019408 1 MCGCGIRSLRYLAEA-KADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSF 79 (341)
Q Consensus 1 fagsG~rgir~a~e~-ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPy 79 (341)
.||.|.-+...|.-. +-..|++||+|+.-++.+++|++..|+. ++.+.+.|+..+-... ...||.|.+|+-
T Consensus 121 CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~-----nv~v~~~D~~~~~~~~---~~~fD~ILvDaP 192 (470)
T PRK11933 121 AAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS-----NVALTHFDGRVFGAAL---PETFDAILLDAP 192 (470)
T ss_pred CCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-----eEEEEeCchhhhhhhc---hhhcCeEEEcCC
Confidence 378999998887643 3358999999999999999999999984 6788999998764322 347999999984
Q ss_pred CC--------C------------------HHHHHHHHHhcccCCEEEEEec
Q 019408 80 GS--------D------------------SSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 80 gs--------p------------------~~fld~al~~v~~gGlL~vt~T 104 (341)
-| | ...|+.|.++|++||.|+ -+|
T Consensus 193 CSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LV-YST 242 (470)
T PRK11933 193 CSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLV-YST 242 (470)
T ss_pred CCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEE-EEC
Confidence 22 1 234678899999999995 577
No 86
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.28 E-value=2e-06 Score=83.53 Aligned_cols=92 Identities=22% Similarity=0.265 Sum_probs=75.7
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEec-cHHHHHHHhhhcCCcccEEEeCC-
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHF-DANRVLSECYLKREFFDLIDIDS- 78 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~-DA~~~l~~~~~~~~~fDvIdlDP- 78 (341)
|+|||.+-|++.. .|+ +|+.+|++...++-++.|++.-+++ .+.+... ||..+= ..+..+|-|..||
T Consensus 205 FcGTGgiLiEagl-~G~-~viG~Did~~mv~gak~Nl~~y~i~-----~~~~~~~~Da~~lp----l~~~~vdaIatDPP 273 (347)
T COG1041 205 FCGTGGILIEAGL-MGA-RVIGSDIDERMVRGAKINLEYYGIE-----DYPVLKVLDATNLP----LRDNSVDAIATDPP 273 (347)
T ss_pred cCCccHHHHhhhh-cCc-eEeecchHHHHHhhhhhhhhhhCcC-----ceeEEEecccccCC----CCCCccceEEecCC
Confidence 8999999999998 687 5899999999999999999998874 5666666 987653 3344699999999
Q ss_pred CCCCH------------HHHHHHHHhcccCCEEEEEe
Q 019408 79 FGSDS------------SFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 ygsp~------------~fld~al~~v~~gGlL~vt~ 103 (341)
||.++ .+++++...|++||.+++.+
T Consensus 274 YGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~ 310 (347)
T COG1041 274 YGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAA 310 (347)
T ss_pred CCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEec
Confidence 98654 45678888999999999844
No 87
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.21 E-value=9.4e-06 Score=74.60 Aligned_cols=96 Identities=15% Similarity=0.133 Sum_probs=78.9
Q ss_pred ccHhHHHHhhh-CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhc--CCcccEEEeCCCC
Q 019408 4 CGIRSLRYLAE-AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLK--REFFDLIDIDSFG 80 (341)
Q Consensus 4 sG~rgir~a~e-~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~--~~~fDvIdlDPyg 80 (341)
||.=+|..|.+ ..-.+|++.|+|++++++-.+=++.-++. +++++++++|.+-|.++... ...||++|+|-+.
T Consensus 84 TGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~----~KI~~i~g~a~esLd~l~~~~~~~tfDfaFvDadK 159 (237)
T KOG1663|consen 84 TGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVD----HKITFIEGPALESLDELLADGESGTFDFAFVDADK 159 (237)
T ss_pred cCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcccc----ceeeeeecchhhhHHHHHhcCCCCceeEEEEccch
Confidence 67777777776 33457999999999999998888888885 78999999999999887655 4569999999854
Q ss_pred C-CHHHHHHHHHhcccCCEEEEEe
Q 019408 81 S-DSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 81 s-p~~fld~al~~v~~gGlL~vt~ 103 (341)
. -+.|.+.++++|+.||+|.+--
T Consensus 160 ~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 160 DNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred HHHHHHHHHHHhhcccccEEEEec
Confidence 2 1277899999999999999843
No 88
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.17 E-value=1.6e-05 Score=79.06 Aligned_cols=99 Identities=16% Similarity=0.221 Sum_probs=80.4
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEe---CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDI---DS 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdl---DP 78 (341)
||+|...+.+|....-..++++|+++.+++.+.+++..+++. ++.++++||..++... ....+|.|.+ ||
T Consensus 131 cGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~-----NV~~i~~DA~~ll~~~--~~~s~D~I~lnFPdP 203 (390)
T PRK14121 131 FGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLK-----NLLIINYDARLLLELL--PSNSVEKIFVHFPVP 203 (390)
T ss_pred CcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCC-----cEEEEECCHHHhhhhC--CCCceeEEEEeCCCC
Confidence 799999999998633357999999999999999999999884 6889999999887543 3457999976 66
Q ss_pred CC-CC------HHHHHHHHHhcccCCEEEEEecCCCC
Q 019408 79 FG-SD------SSFLRTVFNAVKRDGLLYLTSTDGYS 108 (341)
Q Consensus 79 yg-sp------~~fld~al~~v~~gGlL~vt~TD~~~ 108 (341)
.- .. ..|++.+.+.|++||.+.+ .||-..
T Consensus 204 W~KkrHRRlv~~~fL~e~~RvLkpGG~l~l-~TD~~~ 239 (390)
T PRK14121 204 WDKKPHRRVISEDFLNEALRVLKPGGTLEL-RTDSEL 239 (390)
T ss_pred ccccchhhccHHHHHHHHHHHcCCCcEEEE-EEECHH
Confidence 32 11 3789999999999999998 787644
No 89
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.16 E-value=9.9e-06 Score=73.52 Aligned_cols=92 Identities=17% Similarity=0.145 Sum_probs=70.8
Q ss_pred ccccHhHHHHhhhCC-CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 2 CGCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 2 agsG~rgir~a~e~g-a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
||||..+..++...+ ..+|+++|+|+++++.+++|++.+++. +++++.++|+...+.. ...||+|+++--.
T Consensus 81 ~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~----~~v~~~~~d~~~~~~~----~~~fD~Ii~~~~~ 152 (205)
T PRK13944 81 TGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYW----GVVEVYHGDGKRGLEK----HAPFDAIIVTAAA 152 (205)
T ss_pred cCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC----CcEEEEECCcccCCcc----CCCccEEEEccCc
Confidence 799999988876322 358999999999999999999988873 4578899998765432 2479999999621
Q ss_pred CCHHHHHHHHHhcccCCEEEEEe
Q 019408 81 SDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 81 sp~~fld~al~~v~~gGlL~vt~ 103 (341)
. .+.+..++.|++||.|.+.-
T Consensus 153 ~--~~~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 153 S--TIPSALVRQLKDGGVLVIPV 173 (205)
T ss_pred c--hhhHHHHHhcCcCcEEEEEE
Confidence 1 23356678899999998743
No 90
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.15 E-value=1.7e-05 Score=72.54 Aligned_cols=95 Identities=19% Similarity=0.192 Sum_probs=73.7
Q ss_pred CccccHhHHHHhhhCC-CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-
Q 019408 1 MCGCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS- 78 (341)
Q Consensus 1 fagsG~rgir~a~e~g-a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP- 78 (341)
.||+|..++.++...+ ..+|+.+|+|+..++.+++|++.+++ .+++++++|+..+- ...+.||+|.+.-
T Consensus 53 GcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~v~~~~~d~~~~~----~~~~~fD~V~~~~~ 123 (231)
T TIGR02752 53 CCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-----HNVELVHGNAMELP----FDDNSFDYVTIGFG 123 (231)
T ss_pred CCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-----CceEEEEechhcCC----CCCCCccEEEEecc
Confidence 3899999998876533 35899999999999999999987776 36788999987642 1245899998864
Q ss_pred ---CCCCHHHHHHHHHhcccCCEEEEEec
Q 019408 79 ---FGSDSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 79 ---ygsp~~fld~al~~v~~gGlL~vt~T 104 (341)
+..+..++..+.+.|++||.+++..+
T Consensus 124 l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 124 LRNVPDYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred cccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 22344677888999999999987543
No 91
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.11 E-value=3.7e-05 Score=58.81 Aligned_cols=92 Identities=23% Similarity=0.222 Sum_probs=71.4
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
+|+|..+..++. ....+++++|+|+.+++.++++.+.+.. ...++++.|+.+... .....||+|+.++ +.
T Consensus 7 ~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~---~~~~~~d~i~~~~~~~ 77 (107)
T cd02440 7 CGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLA-----DNVEVLKGDAEELPP---EADESFDVIISDPPLH 77 (107)
T ss_pred CCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccc-----cceEEEEcChhhhcc---ccCCceEEEEEcccee
Confidence 789999888887 5678999999999999999975554433 357788999988754 1235799999999 33
Q ss_pred C----CHHHHHHHHHhcccCCEEEEE
Q 019408 81 S----DSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 81 s----p~~fld~al~~v~~gGlL~vt 102 (341)
. +..++..+.+.+++||.+.++
T Consensus 78 ~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 78 HLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 2 246677888899999999875
No 92
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.11 E-value=1.4e-05 Score=74.76 Aligned_cols=129 Identities=18% Similarity=0.188 Sum_probs=88.2
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCC--
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFG-- 80 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPyg-- 80 (341)
|.|...=+.++....++|+++|+|+..+++.++-+...... -+..+++++.+|+..+|++... ++||+|++|.+.
T Consensus 86 G~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~-~~d~r~~i~~~Dg~~~l~~~~~--~~yDvIi~D~~dp~ 162 (246)
T PF01564_consen 86 GDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEG-LDDPRVRIIIGDGRKFLKETQE--EKYDVIIVDLTDPD 162 (246)
T ss_dssp TTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTT-GGSTTEEEEESTHHHHHHTSSS--T-EEEEEEESSSTT
T ss_pred CChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccc-cCCCceEEEEhhhHHHHHhccC--CcccEEEEeCCCCC
Confidence 44544333343345789999999999999999987754220 0125789999999999987532 289999999864
Q ss_pred -CC-----HHHHHHHHHhcccCCEEEEEecCCCCCCCCCchhHHhhhccccCCCCCchhhhHHHHHHHHHHHHHhcCCcE
Q 019408 81 -SD-----SSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHV 154 (341)
Q Consensus 81 -sp-----~~fld~al~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~~~~~~E~~lR~ll~~i~~~Aa~~~~~i 154 (341)
.+ .+|++.+-+.|++||++++.+. +- +.. ...+..+.++..+.-..+
T Consensus 163 ~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~-----~~---------------------~~~-~~~~~~i~~tl~~~F~~v 215 (246)
T PF01564_consen 163 GPAPNLFTREFYQLCKRRLKPDGVLVLQAG-----SP---------------------FLH-PELFKSILKTLRSVFPQV 215 (246)
T ss_dssp SCGGGGSSHHHHHHHHHHEEEEEEEEEEEE-----ET---------------------TTT-HHHHHHHHHHHHTTSSEE
T ss_pred CCcccccCHHHHHHHHhhcCCCcEEEEEcc-----Cc---------------------ccc-hHHHHHHHHHHHHhCCce
Confidence 11 3788999999999999998663 11 111 124566677777777777
Q ss_pred EEEEecc
Q 019408 155 SPLFSYY 161 (341)
Q Consensus 155 ~Pl~s~~ 161 (341)
.|.....
T Consensus 216 ~~~~~~v 222 (246)
T PF01564_consen 216 KPYTAYV 222 (246)
T ss_dssp EEEEEEC
T ss_pred EEEEEEc
Confidence 7776666
No 93
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.09 E-value=1.3e-05 Score=70.25 Aligned_cols=89 Identities=16% Similarity=0.062 Sum_probs=69.2
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
.+|+|..++++++ + +.+|+++|+|+.+++.+++|+... .+++++++|+.++... ...||+|+.+| |
T Consensus 21 G~G~G~lt~~l~~-~-~~~v~~vE~~~~~~~~~~~~~~~~-------~~v~ii~~D~~~~~~~----~~~~d~vi~n~Py 87 (169)
T smart00650 21 GPGKGALTEELLE-R-AARVTAIEIDPRLAPRLREKFAAA-------DNLTVIHGDALKFDLP----KLQPYKVVGNLPY 87 (169)
T ss_pred CCCccHHHHHHHh-c-CCeEEEEECCHHHHHHHHHHhccC-------CCEEEEECchhcCCcc----ccCCCEEEECCCc
Confidence 3799999999998 4 468999999999999999998642 3678999999876421 23699999998 7
Q ss_pred CCCHHHHHHHHHh--cccCCEEEEE
Q 019408 80 GSDSSFLRTVFNA--VKRDGLLYLT 102 (341)
Q Consensus 80 gsp~~fld~al~~--v~~gGlL~vt 102 (341)
....+.+...++. +.++|++.+.
T Consensus 88 ~~~~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 88 NISTPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred ccHHHHHHHHHhcCCCcceEEEEEE
Confidence 7666888877754 3366777663
No 94
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.07 E-value=1.5e-05 Score=72.75 Aligned_cols=91 Identities=13% Similarity=0.124 Sum_probs=70.8
Q ss_pred ccccHhHHHHhhhCCC-CEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 2 CGCGIRSLRYLAEAKA-DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga-~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
+|||..+..++...+. .+|+++|++++.++..++|++.+++ .++++.++|+..... ....||+|+++-..
T Consensus 85 ~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-----~~v~~~~gd~~~~~~----~~~~fD~I~~~~~~ 155 (212)
T PRK13942 85 TGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-----DNVEVIVGDGTLGYE----ENAPYDRIYVTAAG 155 (212)
T ss_pred CcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CCeEEEECCcccCCC----cCCCcCEEEECCCc
Confidence 7999999887764343 5899999999999999999998887 368899999875432 23579999998632
Q ss_pred CCHHHHHHHHHhcccCCEEEEEe
Q 019408 81 SDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 81 sp~~fld~al~~v~~gGlL~vt~ 103 (341)
. ...+..++.|++||.|.+..
T Consensus 156 ~--~~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 156 P--DIPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred c--cchHHHHHhhCCCcEEEEEE
Confidence 2 33356677899999999854
No 95
>PHA03411 putative methyltransferase; Provisional
Probab=98.05 E-value=2.9e-05 Score=73.75 Aligned_cols=66 Identities=23% Similarity=0.195 Sum_probs=53.0
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
.||||+.++.++...+..+|+++|+|+.+++..++|+. +++++++|+..+.. ..+||+|+.+| |
T Consensus 72 GcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~----------~v~~v~~D~~e~~~-----~~kFDlIIsNPPF 136 (279)
T PHA03411 72 CAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP----------EAEWITSDVFEFES-----NEKFDVVISNPPF 136 (279)
T ss_pred CCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc----------CCEEEECchhhhcc-----cCCCcEEEEcCCc
Confidence 48999999999875445689999999999999998742 34678999987642 35799999998 7
Q ss_pred CC
Q 019408 80 GS 81 (341)
Q Consensus 80 gs 81 (341)
+.
T Consensus 137 ~~ 138 (279)
T PHA03411 137 GK 138 (279)
T ss_pred cc
Confidence 64
No 96
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.02 E-value=4.1e-05 Score=74.47 Aligned_cols=92 Identities=15% Similarity=0.123 Sum_probs=71.9
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||+|..++.++. .|+ +|+++|.|++.++.++++++.++.. ..+++.++|+.++-. ..++||+|..-=
T Consensus 140 CG~G~~s~~La~-~g~-~V~GID~s~~~i~~Ar~~~~~~~~~----~~i~~~~~dae~l~~----~~~~FD~Vi~~~vLe 209 (322)
T PLN02396 140 CGGGLLSEPLAR-MGA-TVTGVDAVDKNVKIARLHADMDPVT----STIEYLCTTAEKLAD----EGRKFDAVLSLEVIE 209 (322)
T ss_pred CCCCHHHHHHHH-cCC-EEEEEeCCHHHHHHHHHHHHhcCcc----cceeEEecCHHHhhh----ccCCCCEEEEhhHHH
Confidence 799999998876 565 6999999999999999998876542 467889999977532 235899886311
Q ss_pred -CCCCHHHHHHHHHhcccCCEEEEEe
Q 019408 79 -FGSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 -ygsp~~fld~al~~v~~gGlL~vt~ 103 (341)
...+..|+....+.|++||.++++.
T Consensus 210 Hv~d~~~~L~~l~r~LkPGG~liist 235 (322)
T PLN02396 210 HVANPAEFCKSLSALTIPNGATVLST 235 (322)
T ss_pred hcCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 2235688999999999999999864
No 97
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=97.96 E-value=6.8e-05 Score=70.60 Aligned_cols=93 Identities=11% Similarity=0.093 Sum_probs=71.5
Q ss_pred ccccHhHHHHhhhCCC-CEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 2 CGCGIRSLRYLAEAKA-DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga-~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
+|+|..++.+++..|. .+|+++|+|+..++.+++|++.+++ .++++..+|+..+ ......||+|+.+- +
T Consensus 86 ~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~-----~~v~~~~~d~~~l----~~~~~~fD~Vi~~~v~ 156 (272)
T PRK11873 86 SGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY-----TNVEFRLGEIEAL----PVADNSVDVIISNCVI 156 (272)
T ss_pred CCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC-----CCEEEEEcchhhC----CCCCCceeEEEEcCcc
Confidence 6888888877764455 4799999999999999999998877 3677888997653 12235799998775 2
Q ss_pred ---CCCHHHHHHHHHhcccCCEEEEEe
Q 019408 80 ---GSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 ---gsp~~fld~al~~v~~gGlL~vt~ 103 (341)
......++.+.+.|++||.|++..
T Consensus 157 ~~~~d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 157 NLSPDKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred cCCCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 123467889999999999999843
No 98
>PLN02672 methionine S-methyltransferase
Probab=97.94 E-value=4.6e-05 Score=84.15 Aligned_cols=75 Identities=19% Similarity=-0.041 Sum_probs=59.0
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCC-----------CCCccEEEEeccHHHHHHHhhhcCCc
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGS-----------GDEKRWVVTHFDANRVLSECYLKREF 70 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~-----------~~~~~~~v~~~DA~~~l~~~~~~~~~ 70 (341)
+|||..+|..+++....+|+++|+|++|++++++|+++|+++. ...++++++++|..+.+.. .+.+
T Consensus 127 ~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~---~~~~ 203 (1082)
T PLN02672 127 CGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRD---NNIE 203 (1082)
T ss_pred cchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhccc---cCCc
Confidence 7999999999987555689999999999999999999986520 0013588999999876632 1236
Q ss_pred ccEEEeCC-C
Q 019408 71 FDLIDIDS-F 79 (341)
Q Consensus 71 fDvIdlDP-y 79 (341)
||+|+-.| |
T Consensus 204 fDlIVSNPPY 213 (1082)
T PLN02672 204 LDRIVGCIPQ 213 (1082)
T ss_pred eEEEEECCCc
Confidence 99999888 5
No 99
>PHA03412 putative methyltransferase; Provisional
Probab=97.94 E-value=2.4e-05 Score=72.77 Aligned_cols=82 Identities=13% Similarity=0.088 Sum_probs=61.0
Q ss_pred ccccHhHHHHhhhC---CCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC
Q 019408 2 CGCGIRSLRYLAEA---KADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS 78 (341)
Q Consensus 2 agsG~rgir~a~e~---ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP 78 (341)
||||.+++.++.+. ...+|+++|+|+.|++++++|+. .+.+++.|+..... ..+||+|+..|
T Consensus 58 ~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~----------~~~~~~~D~~~~~~-----~~~FDlIIsNP 122 (241)
T PHA03412 58 AGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP----------EATWINADALTTEF-----DTLFDMAISNP 122 (241)
T ss_pred ChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc----------CCEEEEcchhcccc-----cCCccEEEECC
Confidence 79999999888751 34589999999999999999863 24577888864321 24799999999
Q ss_pred -CCCC---------------HHHHHHHHHhcccCCE
Q 019408 79 -FGSD---------------SSFLRTVFNAVKRDGL 98 (341)
Q Consensus 79 -ygsp---------------~~fld~al~~v~~gGl 98 (341)
|+.. ..+++.|.+++++|++
T Consensus 123 PY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 123 PFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 7621 1356788886666665
No 100
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=97.90 E-value=4.7e-05 Score=69.08 Aligned_cols=90 Identities=17% Similarity=0.137 Sum_probs=68.8
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
+|||..+...+. .+ .+|+++|+|+++++.+++|++.+++. ++++.++|+...+. ....||+|+++...
T Consensus 87 ~GsG~~t~~la~-~~-~~v~~vd~~~~~~~~a~~~~~~~~~~-----~v~~~~~d~~~~~~----~~~~fD~I~~~~~~- 154 (212)
T PRK00312 87 TGSGYQAAVLAH-LV-RRVFSVERIKTLQWEAKRRLKQLGLH-----NVSVRHGDGWKGWP----AYAPFDRILVTAAA- 154 (212)
T ss_pred CCccHHHHHHHH-Hh-CEEEEEeCCHHHHHHHHHHHHHCCCC-----ceEEEECCcccCCC----cCCCcCEEEEccCc-
Confidence 799999885555 33 48999999999999999999988873 57889999864322 23579999999722
Q ss_pred CHHHHHHHHHhcccCCEEEEEec
Q 019408 82 DSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 82 p~~fld~al~~v~~gGlL~vt~T 104 (341)
..+.+...+.|++||.|.+...
T Consensus 155 -~~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 155 -PEIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred -hhhhHHHHHhcCCCcEEEEEEc
Confidence 1334566788999999997543
No 101
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=97.88 E-value=9.7e-05 Score=66.50 Aligned_cols=89 Identities=21% Similarity=0.167 Sum_probs=64.8
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
||+|..++.++. +|. +|+++|+|+.+++.++++++.+++ .++....|+...- . ...||+|+.-. |.
T Consensus 39 cG~G~~a~~la~-~g~-~V~~iD~s~~~l~~a~~~~~~~~~------~v~~~~~d~~~~~--~---~~~fD~I~~~~~~~ 105 (195)
T TIGR00477 39 CGQGRNSLYLSL-AGY-DVRAWDHNPASIASVLDMKARENL------PLRTDAYDINAAA--L---NEDYDFIFSTVVFM 105 (195)
T ss_pred CCCCHHHHHHHH-CCC-eEEEEECCHHHHHHHHHHHHHhCC------CceeEeccchhcc--c---cCCCCEEEEecccc
Confidence 799999998887 675 799999999999999999988776 2455666764321 1 24799887643 42
Q ss_pred C--C---HHHHHHHHHhcccCCEEE-EEe
Q 019408 81 S--D---SSFLRTVFNAVKRDGLLY-LTS 103 (341)
Q Consensus 81 s--p---~~fld~al~~v~~gGlL~-vt~ 103 (341)
. + ..++..+.+.|++||++. ++.
T Consensus 106 ~~~~~~~~~~l~~~~~~LkpgG~lli~~~ 134 (195)
T TIGR00477 106 FLQAGRVPEIIANMQAHTRPGGYNLIVAA 134 (195)
T ss_pred cCCHHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence 1 1 356778888999999854 443
No 102
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=97.87 E-value=0.00013 Score=65.76 Aligned_cols=88 Identities=19% Similarity=0.134 Sum_probs=66.0
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||+|..++..+. +|. +|+++|+|+.+++.++++++.+++. .+++...|+..+- . ...||+|+.=-
T Consensus 39 cG~G~~a~~La~-~g~-~V~gvD~S~~~i~~a~~~~~~~~~~-----~v~~~~~d~~~~~----~-~~~fD~I~~~~~~~ 106 (197)
T PRK11207 39 CGNGRNSLYLAA-NGF-DVTAWDKNPMSIANLERIKAAENLD-----NLHTAVVDLNNLT----F-DGEYDFILSTVVLM 106 (197)
T ss_pred CCCCHHHHHHHH-CCC-EEEEEeCCHHHHHHHHHHHHHcCCC-----cceEEecChhhCC----c-CCCcCEEEEecchh
Confidence 799999988887 565 7999999999999999999988773 4677788876531 1 34699886432
Q ss_pred CCC---CHHHHHHHHHhcccCCEEEE
Q 019408 79 FGS---DSSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 79 ygs---p~~fld~al~~v~~gGlL~v 101 (341)
|-. ...++....++|++||.+.+
T Consensus 107 ~~~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 107 FLEAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 211 23667788889999998543
No 103
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.82 E-value=0.00012 Score=71.33 Aligned_cols=90 Identities=16% Similarity=0.162 Sum_probs=70.3
Q ss_pred ccccHhHHHHhhhCCC-CEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 2 CGCGIRSLRYLAEAKA-DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga-~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
||||..++.+++..+. .+|+++|+|++.++..++|++.++++ +++++++|+...... ...||+|+++. +
T Consensus 89 ~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~-----nV~~i~gD~~~~~~~----~~~fD~Ii~~~-g 158 (322)
T PRK13943 89 GGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIE-----NVIFVCGDGYYGVPE----FAPYDVIFVTV-G 158 (322)
T ss_pred CCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----cEEEEeCChhhcccc----cCCccEEEECC-c
Confidence 7999999999874332 47999999999999999999998873 578889998765432 24699999985 2
Q ss_pred CCHHHHHHHHHhcccCCEEEEE
Q 019408 81 SDSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 81 sp~~fld~al~~v~~gGlL~vt 102 (341)
.+ ...+..++.+++||.+.+.
T Consensus 159 ~~-~ip~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 159 VD-EVPETWFTQLKEGGRVIVP 179 (322)
T ss_pred hH-HhHHHHHHhcCCCCEEEEE
Confidence 21 3345678899999998873
No 104
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=97.82 E-value=0.00015 Score=67.69 Aligned_cols=94 Identities=19% Similarity=0.186 Sum_probs=75.6
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||||-.+++++++.|..+|+++|+|+.-++..++=+..-+.. .++.+.+||..+- -..+.||+|.+.=
T Consensus 60 ~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~-----~i~fv~~dAe~LP----f~D~sFD~vt~~fglr 130 (238)
T COG2226 60 CGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQ-----NVEFVVGDAENLP----FPDNSFDAVTISFGLR 130 (238)
T ss_pred CCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCcc-----ceEEEEechhhCC----CCCCccCEEEeeehhh
Confidence 799999999999877789999999999999999988765553 3889999999765 2356899997753
Q ss_pred -CCCCHHHHHHHHHhcccCCEEEEEec
Q 019408 79 -FGSDSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 79 -ygsp~~fld~al~~v~~gGlL~vt~T 104 (341)
+..+...|....+.+++||.+++..+
T Consensus 131 nv~d~~~aL~E~~RVlKpgG~~~vle~ 157 (238)
T COG2226 131 NVTDIDKALKEMYRVLKPGGRLLVLEF 157 (238)
T ss_pred cCCCHHHHHHHHHHhhcCCeEEEEEEc
Confidence 22233567777899999999887665
No 105
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.81 E-value=0.0001 Score=78.80 Aligned_cols=83 Identities=10% Similarity=-0.063 Sum_probs=58.7
Q ss_pred EEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CCCCH---HHHH-------
Q 019408 19 FVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FGSDS---SFLR------- 87 (341)
Q Consensus 19 ~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-ygsp~---~fld------- 87 (341)
+++++|+|+.+++.+++|++.+++. +.+++.++|+.++-... ....||+|+.+| ||.-. +-++
T Consensus 258 ~i~G~Did~~av~~A~~N~~~~g~~----~~i~~~~~D~~~~~~~~--~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg 331 (702)
T PRK11783 258 KFYGSDIDPRVIQAARKNARRAGVA----ELITFEVKDVADLKNPL--PKGPTGLVISNPPYGERLGEEPALIALYSQLG 331 (702)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCC----cceEEEeCChhhccccc--ccCCCCEEEECCCCcCccCchHHHHHHHHHHH
Confidence 6899999999999999999999985 56889999998764321 124699999998 87522 1111
Q ss_pred HHHHhcccCCEEEEEecCCC
Q 019408 88 TVFNAVKRDGLLYLTSTDGY 107 (341)
Q Consensus 88 ~al~~v~~gGlL~vt~TD~~ 107 (341)
..++...+|+-+++-+.|..
T Consensus 332 ~~lk~~~~g~~~~llt~~~~ 351 (702)
T PRK11783 332 RRLKQQFGGWNAALFSSSPE 351 (702)
T ss_pred HHHHHhCCCCeEEEEeCCHH
Confidence 23443447777766555544
No 106
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.81 E-value=4.5e-05 Score=69.82 Aligned_cols=76 Identities=16% Similarity=0.201 Sum_probs=67.2
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
|+|.|.-.|.+|. .|. .|+++|+||.-+...++|++.-|++ ++++++++|..++...+...+.++|+|++-| .
T Consensus 102 f~g~gGntiqfa~-~~~-~VisIdiDPikIa~AkhNaeiYGI~----~rItFI~GD~ld~~~~lq~~K~~~~~vf~sppw 175 (263)
T KOG2730|consen 102 FCGVGGNTIQFAL-QGP-YVIAIDIDPVKIACARHNAEVYGVP----DRITFICGDFLDLASKLKADKIKYDCVFLSPPW 175 (263)
T ss_pred hhcCCchHHHHHH-hCC-eEEEEeccHHHHHHHhccceeecCC----ceeEEEechHHHHHHHHhhhhheeeeeecCCCC
Confidence 6888999999998 454 6999999999999999999999996 6899999999999998877777889999998 6
Q ss_pred CCC
Q 019408 80 GSD 82 (341)
Q Consensus 80 gsp 82 (341)
|-|
T Consensus 176 ggp 178 (263)
T KOG2730|consen 176 GGP 178 (263)
T ss_pred CCc
Confidence 655
No 107
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=97.79 E-value=0.0001 Score=70.29 Aligned_cols=87 Identities=18% Similarity=0.159 Sum_probs=65.9
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||+|..++.+++ .|. +|+++|+|+.+++.+++|++.+++ .+++...|+...- . .+.||+|+.--
T Consensus 129 cG~G~~~~~la~-~g~-~V~avD~s~~ai~~~~~~~~~~~l------~v~~~~~D~~~~~----~-~~~fD~I~~~~vl~ 195 (287)
T PRK12335 129 CGQGRNSLYLAL-LGF-DVTAVDINQQSLENLQEIAEKENL------NIRTGLYDINSAS----I-QEEYDFILSTVVLM 195 (287)
T ss_pred CCCCHHHHHHHH-CCC-EEEEEECCHHHHHHHHHHHHHcCC------ceEEEEechhccc----c-cCCccEEEEcchhh
Confidence 799999999887 564 799999999999999999998776 3566777876531 1 35799997653
Q ss_pred CCC---CHHHHHHHHHhcccCCEEEE
Q 019408 79 FGS---DSSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 79 ygs---p~~fld~al~~v~~gGlL~v 101 (341)
|-. ...++....+.+++||++.+
T Consensus 196 ~l~~~~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 196 FLNRERIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred hCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 211 12466777789999999664
No 108
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=97.79 E-value=6.5e-05 Score=70.45 Aligned_cols=97 Identities=14% Similarity=0.037 Sum_probs=72.4
Q ss_pred ccccHhHHHHhhh-CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 2 CGCGIRSLRYLAE-AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 2 agsG~rgir~a~e-~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
+|||.+++-.+.- ..-.+|+..|++++-.+.+++|++.+++. +.+++.+.|+.+--... .....||.|+||=-.
T Consensus 49 tGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~----~~v~~~~~Dv~~~g~~~-~~~~~~DavfLDlp~ 123 (247)
T PF08704_consen 49 TGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLD----DNVTVHHRDVCEEGFDE-ELESDFDAVFLDLPD 123 (247)
T ss_dssp -TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCC----TTEEEEES-GGCG--ST-T-TTSEEEEEEESSS
T ss_pred CCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCC----CCceeEecceecccccc-cccCcccEEEEeCCC
Confidence 4889988887764 23468999999999999999999999984 57899999986321111 112479999999722
Q ss_pred CCHHHHHHHHHhc-ccCCEEEEEec
Q 019408 81 SDSSFLRTVFNAV-KRDGLLYLTST 104 (341)
Q Consensus 81 sp~~fld~al~~v-~~gGlL~vt~T 104 (341)
|-..++.+.++| ++||.|++-+.
T Consensus 124 -Pw~~i~~~~~~L~~~gG~i~~fsP 147 (247)
T PF08704_consen 124 -PWEAIPHAKRALKKPGGRICCFSP 147 (247)
T ss_dssp -GGGGHHHHHHHE-EEEEEEEEEES
T ss_pred -HHHHHHHHHHHHhcCCceEEEECC
Confidence 334588999999 89999998554
No 109
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.79 E-value=0.00023 Score=69.59 Aligned_cols=96 Identities=18% Similarity=0.175 Sum_probs=71.5
Q ss_pred HHHHhhh-CCCCEEEEeeCCHHHHHHHHHHHHHcCCC--CCCCccEEEEeccHHHHHHHhhhcCCcccEEEeC---C--C
Q 019408 8 SLRYLAE-AKADFVMANDGNDAHRRVILGNLKSIERG--SGDEKRWVVTHFDANRVLSECYLKREFFDLIDID---S--F 79 (341)
Q Consensus 8 gir~a~e-~ga~~V~~~Dis~~A~~~i~~N~~~n~~~--~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlD---P--y 79 (341)
++|=+.. .+..+|+.+|.+|+.+|+.++|..+-.+. .-.+-+++|++.||+.+++.. +++||+|++| | +
T Consensus 303 AlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a---~~~fD~vIVDl~DP~tp 379 (508)
T COG4262 303 ALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTA---ADMFDVVIVDLPDPSTP 379 (508)
T ss_pred HHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhh---cccccEEEEeCCCCCCc
Confidence 4444443 67899999999999999999887753221 011346889999999999865 5689999876 4 1
Q ss_pred CC----CHHHHHHHHHhcccCCEEEEEecCC
Q 019408 80 GS----DSSFLRTVFNAVKRDGLLYLTSTDG 106 (341)
Q Consensus 80 gs----p~~fld~al~~v~~gGlL~vt~TD~ 106 (341)
.. ..+|.-.+-+.++++|++.+.+++.
T Consensus 380 s~~rlYS~eFY~ll~~~l~e~Gl~VvQags~ 410 (508)
T COG4262 380 SIGRLYSVEFYRLLSRHLAETGLMVVQAGSP 410 (508)
T ss_pred chhhhhhHHHHHHHHHhcCcCceEEEecCCC
Confidence 11 2377777788999999999988743
No 110
>PLN02244 tocopherol O-methyltransferase
Probab=97.75 E-value=0.00012 Score=71.69 Aligned_cols=93 Identities=14% Similarity=0.072 Sum_probs=73.1
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeC-C--
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDID-S-- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlD-P-- 78 (341)
||+|..++..+...| .+|+.+|+|+..++.++++++.+++. +++++.++|+..+- .....||+|+.- -
T Consensus 127 CG~G~~~~~La~~~g-~~v~gvD~s~~~i~~a~~~~~~~g~~----~~v~~~~~D~~~~~----~~~~~FD~V~s~~~~~ 197 (340)
T PLN02244 127 CGIGGSSRYLARKYG-ANVKGITLSPVQAARANALAAAQGLS----DKVSFQVADALNQP----FEDGQFDLVWSMESGE 197 (340)
T ss_pred CCCCHHHHHHHHhcC-CEEEEEECCHHHHHHHHHHHHhcCCC----CceEEEEcCcccCC----CCCCCccEEEECCchh
Confidence 799999988887434 47999999999999999999988773 46888999987531 224579999763 2
Q ss_pred -CCCCHHHHHHHHHhcccCCEEEEEe
Q 019408 79 -FGSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 -ygsp~~fld~al~~v~~gGlL~vt~ 103 (341)
+..+..++..+.+.|++||.|.++.
T Consensus 198 h~~d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 198 HMPDKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred ccCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 3334578888999999999999854
No 111
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=97.74 E-value=0.00013 Score=66.41 Aligned_cols=93 Identities=13% Similarity=0.114 Sum_probs=72.2
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||+|..++.++.+.+..+|+.+|+|++.++.+++|++..++. .++++...|+.+... ...||+|+.-=
T Consensus 8 cG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~----~~i~~~~~d~~~~~~-----~~~fD~I~~~~~l~ 78 (224)
T smart00828 8 CGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQ----GRIRIFYRDSAKDPF-----PDTYDLVFGFEVIH 78 (224)
T ss_pred CCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCC----cceEEEecccccCCC-----CCCCCEeehHHHHH
Confidence 689999999887643457999999999999999999987774 567888888754311 24799997521
Q ss_pred -CCCCHHHHHHHHHhcccCCEEEEEe
Q 019408 79 -FGSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 -ygsp~~fld~al~~v~~gGlL~vt~ 103 (341)
...+..++..+.+.|++||.+.++.
T Consensus 79 ~~~~~~~~l~~~~~~LkpgG~l~i~~ 104 (224)
T smart00828 79 HIKDKMDLFSNISRHLKDGGHLVLAD 104 (224)
T ss_pred hCCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 2334578889999999999999864
No 112
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.72 E-value=0.0002 Score=70.55 Aligned_cols=96 Identities=24% Similarity=0.227 Sum_probs=68.9
Q ss_pred ccccHhHHHHhhhC-C-CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCC
Q 019408 2 CGCGIRSLRYLAEA-K-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSF 79 (341)
Q Consensus 2 agsG~rgir~a~e~-g-a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPy 79 (341)
||=|.-....|.-. + ...|++||+|+.=++.+++|++..|+. .+.+++.|+..+..... .+.+||.|.+||-
T Consensus 165 AAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~-----nv~~~~~d~~~~~~~~~-~~~~fD~iLlDaP 238 (355)
T COG0144 165 AAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR-----NVIVVNKDARRLAELLP-GGEKFDRILLDAP 238 (355)
T ss_pred CCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC-----ceEEEeccccccccccc-ccCcCcEEEECCC
Confidence 34454444444321 1 345799999999999999999999984 47788999887654432 2336999999983
Q ss_pred CCCH--------------------------HHHHHHHHhcccCCEEEEEec
Q 019408 80 GSDS--------------------------SFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 80 gsp~--------------------------~fld~al~~v~~gGlL~vt~T 104 (341)
-|.. .+|++|++.|++||.|.. +|
T Consensus 239 CSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVY-ST 288 (355)
T COG0144 239 CSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVY-ST 288 (355)
T ss_pred CCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEE-Ec
Confidence 2211 345699999999999986 66
No 113
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=97.72 E-value=0.00031 Score=64.37 Aligned_cols=91 Identities=22% Similarity=0.258 Sum_probs=71.3
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||+|..++.+++ .++ +|+.+|+|+.+++.+++|+..++. .+++...|+..+... .+.+||+|++.-
T Consensus 57 ~G~G~~~~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~~~~~------~~~~~~~~~~~~~~~---~~~~fD~Ii~~~~l~ 125 (233)
T PRK05134 57 CGGGILSESMAR-LGA-DVTGIDASEENIEVARLHALESGL------KIDYRQTTAEELAAE---HPGQFDVVTCMEMLE 125 (233)
T ss_pred CCCCHHHHHHHH-cCC-eEEEEcCCHHHHHHHHHHHHHcCC------ceEEEecCHHHhhhh---cCCCccEEEEhhHhh
Confidence 789999988887 564 699999999999999999987654 356778888876532 235899998753
Q ss_pred -CCCCHHHHHHHHHhcccCCEEEEEe
Q 019408 79 -FGSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 -ygsp~~fld~al~~v~~gGlL~vt~ 103 (341)
...+..++..+.+.+++||.++++.
T Consensus 126 ~~~~~~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 126 HVPDPASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred ccCCHHHHHHHHHHHcCCCcEEEEEe
Confidence 2345577888889999999999853
No 114
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.71 E-value=7.3e-05 Score=73.77 Aligned_cols=72 Identities=18% Similarity=0.266 Sum_probs=60.4
Q ss_pred CccccHhHHHHhhhCCCC----------------------------------------EEEEeeCCHHHHHHHHHHHHHc
Q 019408 1 MCGCGIRSLRYLAEAKAD----------------------------------------FVMANDGNDAHRRVILGNLKSI 40 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~----------------------------------------~V~~~Dis~~A~~~i~~N~~~n 40 (341)
|||||-+.||+|. .+.. .++..|+|+..++.++.|++.-
T Consensus 199 mCGSGTi~IEAAl-~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~A 277 (381)
T COG0116 199 MCGSGTILIEAAL-IAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKANARAA 277 (381)
T ss_pred CCCccHHHHHHHH-hccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhc
Confidence 8999999999998 4531 4779999999999999999999
Q ss_pred CCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CCC
Q 019408 41 ERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FGS 81 (341)
Q Consensus 41 ~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-ygs 81 (341)
|+. +.+++.++|+.++=.. -+.+|+|+.+| ||-
T Consensus 278 Gv~----d~I~f~~~d~~~l~~~----~~~~gvvI~NPPYGe 311 (381)
T COG0116 278 GVG----DLIEFKQADATDLKEP----LEEYGVVISNPPYGE 311 (381)
T ss_pred CCC----ceEEEEEcchhhCCCC----CCcCCEEEeCCCcch
Confidence 985 7889999999876322 15799999999 863
No 115
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.71 E-value=0.00037 Score=66.65 Aligned_cols=97 Identities=23% Similarity=0.253 Sum_probs=72.3
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCC--
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFG-- 80 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPyg-- 80 (341)
|-|...=+.++....++|+++|||+..+++.++=+..-... .+..+++++-+|+.+++++.. ++||+|++|-+-
T Consensus 86 GdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~-~~dpRv~i~i~Dg~~~v~~~~---~~fDvIi~D~tdp~ 161 (282)
T COG0421 86 GDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGG-ADDPRVEIIIDDGVEFLRDCE---EKFDVIIVDSTDPV 161 (282)
T ss_pred CccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccc-cCCCceEEEeccHHHHHHhCC---CcCCEEEEcCCCCC
Confidence 44554444454455799999999999999999977643210 012578999999999998763 389999998532
Q ss_pred CC------HHHHHHHHHhcccCCEEEEEe
Q 019408 81 SD------SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 81 sp------~~fld~al~~v~~gGlL~vt~ 103 (341)
.| .+|.+..-++|+++|++.+.+
T Consensus 162 gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 162 GPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred CcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 13 588899999999999999753
No 116
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=97.68 E-value=7e-05 Score=57.71 Aligned_cols=87 Identities=20% Similarity=0.219 Sum_probs=64.4
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||+|..+...++ .+..+|+++|+|++.++.++++.+..+ +.+.++|+.++ ....+.||+|+.-=
T Consensus 5 ~G~G~~~~~l~~-~~~~~v~~~D~~~~~~~~~~~~~~~~~--------~~~~~~d~~~l----~~~~~sfD~v~~~~~~~ 71 (95)
T PF08241_consen 5 CGTGRFAAALAK-RGGASVTGIDISEEMLEQARKRLKNEG--------VSFRQGDAEDL----PFPDNSFDVVFSNSVLH 71 (95)
T ss_dssp -TTSHHHHHHHH-TTTCEEEEEES-HHHHHHHHHHTTTST--------EEEEESBTTSS----SS-TT-EEEEEEESHGG
T ss_pred CcCCHHHHHHHh-ccCCEEEEEeCCHHHHHHHHhcccccC--------chheeehHHhC----cccccccccccccccee
Confidence 688888888887 467889999999999999999887443 34788897765 22356899986654
Q ss_pred -CCCCHHHHHHHHHhcccCCEEEE
Q 019408 79 -FGSDSSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 79 -ygsp~~fld~al~~v~~gGlL~v 101 (341)
+..+..++..+.+.||+||.+++
T Consensus 72 ~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 72 HLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp GSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred eccCHHHHHHHHHHHcCcCeEEeC
Confidence 22345778889999999999975
No 117
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.68 E-value=5.4e-05 Score=76.81 Aligned_cols=90 Identities=24% Similarity=0.222 Sum_probs=67.2
Q ss_pred ccccHhHHHHhhh----CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeC
Q 019408 2 CGCGIRSLRYLAE----AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDID 77 (341)
Q Consensus 2 agsG~rgir~a~e----~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlD 77 (341)
||+|+++.++++. .++.+|+|++.|+.|+..+++-++.|+.+ ++++++++|..++ ..+++.|+|+-.
T Consensus 195 AGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~----~~V~vi~~d~r~v-----~lpekvDIIVSE 265 (448)
T PF05185_consen 195 AGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWG----DKVTVIHGDMREV-----ELPEKVDIIVSE 265 (448)
T ss_dssp -TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTT----TTEEEEES-TTTS-----CHSS-EEEEEE-
T ss_pred CCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCC----CeEEEEeCcccCC-----CCCCceeEEEEe
Confidence 7999998777662 24789999999999999998887889885 6899999998865 235699999988
Q ss_pred CCCC---C---HHHHHHHHHhcccCCEEE
Q 019408 78 SFGS---D---SSFLRTVFNAVKRDGLLY 100 (341)
Q Consensus 78 Pygs---p---~~fld~al~~v~~gGlL~ 100 (341)
..|+ - .+-++.+-+.|+++|++.
T Consensus 266 lLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 266 LLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp --BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred ccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 8654 1 134667777899999988
No 118
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.67 E-value=4.6e-05 Score=70.36 Aligned_cols=93 Identities=26% Similarity=0.249 Sum_probs=74.2
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC--C
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--F 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--y 79 (341)
.|-|..+|+++. +||.+|+.++.||..+++.+-|==.-++. +..++++.+||.++..... .+.||+|+-|| |
T Consensus 143 ~GLGYtAi~a~~-rGA~~VitvEkdp~VLeLa~lNPwSr~l~---~~~i~iilGD~~e~V~~~~--D~sfDaIiHDPPRf 216 (287)
T COG2521 143 TGLGYTAIEALE-RGAIHVITVEKDPNVLELAKLNPWSRELF---EIAIKIILGDAYEVVKDFD--DESFDAIIHDPPRF 216 (287)
T ss_pred cCccHHHHHHHH-cCCcEEEEEeeCCCeEEeeccCCCCcccc---ccccEEecccHHHHHhcCC--ccccceEeeCCCcc
Confidence 477899999987 89999999999999999987764333332 1357899999999998763 46799999999 5
Q ss_pred CCC-----HHHHHHHHHhcccCCEEE
Q 019408 80 GSD-----SSFLRTVFNAVKRDGLLY 100 (341)
Q Consensus 80 gsp-----~~fld~al~~v~~gGlL~ 100 (341)
..+ ..|.+.-.+.|++||-|.
T Consensus 217 S~AgeLYseefY~El~RiLkrgGrlF 242 (287)
T COG2521 217 SLAGELYSEEFYRELYRILKRGGRLF 242 (287)
T ss_pred chhhhHhHHHHHHHHHHHcCcCCcEE
Confidence 432 356678889999999887
No 119
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=97.65 E-value=0.00018 Score=67.00 Aligned_cols=86 Identities=15% Similarity=0.144 Sum_probs=66.5
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C-
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F- 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y- 79 (341)
||+|..++.++...+..+|+++|+|+..++.+++++. ++.+..+|+..+. ....||+|+... +
T Consensus 40 cG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~----------~~~~~~~d~~~~~-----~~~~fD~v~~~~~l~ 104 (258)
T PRK01683 40 CGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP----------DCQFVEADIASWQ-----PPQALDLIFANASLQ 104 (258)
T ss_pred ccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC----------CCeEEECchhccC-----CCCCccEEEEccChh
Confidence 7999999888875345689999999999999988742 3456788887543 234899998886 2
Q ss_pred --CCCHHHHHHHHHhcccCCEEEEE
Q 019408 80 --GSDSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 80 --gsp~~fld~al~~v~~gGlL~vt 102 (341)
..+..++..+.+.|++||.+.++
T Consensus 105 ~~~d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 105 WLPDHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred hCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 22446788888999999999985
No 120
>PLN03075 nicotianamine synthase; Provisional
Probab=97.62 E-value=0.00026 Score=68.07 Aligned_cols=92 Identities=15% Similarity=0.131 Sum_probs=69.1
Q ss_pred cccH---hHHHHhhhC-CCCEEEEeeCCHHHHHHHHHHHHH-cCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeC
Q 019408 3 GCGI---RSLRYLAEA-KADFVMANDGNDAHRRVILGNLKS-IERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDID 77 (341)
Q Consensus 3 gsG~---rgir~a~e~-ga~~V~~~Dis~~A~~~i~~N~~~-n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlD 77 (341)
|||- .+|-.+... ...+++.+|+|+++++..+++++. .++. +++++..+|+.+.... ..+||+|+++
T Consensus 131 GcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~----~rV~F~~~Da~~~~~~----l~~FDlVF~~ 202 (296)
T PLN03075 131 GSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLS----KRMFFHTADVMDVTES----LKEYDVVFLA 202 (296)
T ss_pred CCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCcc----CCcEEEECchhhcccc----cCCcCEEEEe
Confidence 5662 466665432 235799999999999999999964 5664 5688999999875322 2479999999
Q ss_pred C---C--CCCHHHHHHHHHhcccCCEEEEE
Q 019408 78 S---F--GSDSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 78 P---y--gsp~~fld~al~~v~~gGlL~vt 102 (341)
- | ..+...++...+.+++||+|.+-
T Consensus 203 ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr 232 (296)
T PLN03075 203 ALVGMDKEEKVKVIEHLGKHMAPGALLMLR 232 (296)
T ss_pred cccccccccHHHHHHHHHHhcCCCcEEEEe
Confidence 5 1 24557788888999999999983
No 121
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=97.62 E-value=0.00051 Score=62.36 Aligned_cols=92 Identities=17% Similarity=0.226 Sum_probs=72.5
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||+|..++.+++ .+. +++.+|.|+..++..++|+..+++ .++.+...|+.++.... ...||+|.+.-
T Consensus 54 ~G~G~~~~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~~~~~-----~~~~~~~~d~~~~~~~~---~~~~D~i~~~~~l~ 123 (224)
T TIGR01983 54 CGGGLLSEPLAR-LGA-NVTGIDASEENIEVAKLHAKKDPL-----LKIEYRCTSVEDLAEKG---AKSFDVVTCMEVLE 123 (224)
T ss_pred CCCCHHHHHHHh-cCC-eEEEEeCCHHHHHHHHHHHHHcCC-----CceEEEeCCHHHhhcCC---CCCccEEEehhHHH
Confidence 789999998877 465 599999999999999999987765 24677888988765321 35799998763
Q ss_pred -CCCCHHHHHHHHHhcccCCEEEEEe
Q 019408 79 -FGSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 -ygsp~~fld~al~~v~~gGlL~vt~ 103 (341)
...+..++..+.+.+++||.+.++.
T Consensus 124 ~~~~~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 124 HVPDPQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred hCCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 3445678888899999999998754
No 122
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=97.61 E-value=0.00017 Score=73.40 Aligned_cols=91 Identities=15% Similarity=0.178 Sum_probs=70.2
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||+|..++..+++.|+ +|+++|+|+.+++..++|....+ .++++.++|+.... .....||+|..--
T Consensus 275 cG~G~~~~~la~~~~~-~v~gvDiS~~~l~~A~~~~~~~~------~~v~~~~~d~~~~~----~~~~~fD~I~s~~~l~ 343 (475)
T PLN02336 275 CGIGGGDFYMAENFDV-HVVGIDLSVNMISFALERAIGRK------CSVEFEVADCTKKT----YPDNSFDVIYSRDTIL 343 (475)
T ss_pred ccCCHHHHHHHHhcCC-EEEEEECCHHHHHHHHHHhhcCC------CceEEEEcCcccCC----CCCCCEEEEEECCccc
Confidence 6899999888875554 79999999999999999986332 35778899987532 1235799998742
Q ss_pred -CCCCHHHHHHHHHhcccCCEEEEEe
Q 019408 79 -FGSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 -ygsp~~fld~al~~v~~gGlL~vt~ 103 (341)
+..+..++..+.+.|++||.|+++.
T Consensus 344 h~~d~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 344 HIQDKPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred ccCCHHHHHHHHHHHcCCCeEEEEEE
Confidence 3345678889999999999999864
No 123
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=97.61 E-value=0.00033 Score=63.72 Aligned_cols=95 Identities=18% Similarity=0.189 Sum_probs=72.2
Q ss_pred ccccHhHHHHhhhCC-CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC--
Q 019408 2 CGCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-- 78 (341)
Q Consensus 2 agsG~rgir~a~e~g-a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-- 78 (341)
||+|..++.++...+ ..+++++|+++.+++.+++|+..++.. ..+.+...|+.... .....||+|++.-
T Consensus 60 ~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~----~~~~~~~~d~~~~~----~~~~~~D~I~~~~~l 131 (239)
T PRK00216 60 CGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLS----GNVEFVQGDAEALP----FPDNSFDAVTIAFGL 131 (239)
T ss_pred CCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccc----cCeEEEecccccCC----CCCCCccEEEEeccc
Confidence 789999999887422 378999999999999999999876542 35678888887642 2235799998643
Q ss_pred --CCCCHHHHHHHHHhcccCCEEEEEec
Q 019408 79 --FGSDSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 79 --ygsp~~fld~al~~v~~gGlL~vt~T 104 (341)
+..+..+++.+.+++++||.+.+...
T Consensus 132 ~~~~~~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 132 RNVPDIDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred ccCCCHHHHHHHHHHhccCCcEEEEEEe
Confidence 23456788899999999999886443
No 124
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=97.61 E-value=0.00033 Score=65.35 Aligned_cols=92 Identities=15% Similarity=0.188 Sum_probs=68.5
Q ss_pred ccccHhHHHHhhh--CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-
Q 019408 2 CGCGIRSLRYLAE--AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS- 78 (341)
Q Consensus 2 agsG~rgir~a~e--~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP- 78 (341)
||+|..++..+.. ....+|+++|+|+.+++..++|++.++.. .+++++++|+..+. ...||+|++-.
T Consensus 65 cGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~----~~v~~~~~d~~~~~------~~~~D~vv~~~~ 134 (247)
T PRK15451 65 CSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAP----TPVDVIEGDIRDIA------IENASMVVLNFT 134 (247)
T ss_pred ccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC----CCeEEEeCChhhCC------CCCCCEEehhhH
Confidence 7899988876652 12357999999999999999999987763 46888999987542 13589887643
Q ss_pred --CCCC---HHHHHHHHHhcccCCEEEEEe
Q 019408 79 --FGSD---SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 --ygsp---~~fld~al~~v~~gGlL~vt~ 103 (341)
|-.+ ..++....+.|++||.|.++.
T Consensus 135 l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 135 LQFLEPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred HHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 2211 256778888999999999853
No 125
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.60 E-value=0.00016 Score=70.41 Aligned_cols=73 Identities=10% Similarity=-0.048 Sum_probs=50.9
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHc-CCCCCCCccEEEE-eccHHHHHHHhhhcCCcccEEEeCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSI-ERGSGDEKRWVVT-HFDANRVLSECYLKREFFDLIDIDS 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n-~~~~~~~~~~~v~-~~DA~~~l~~~~~~~~~fDvIdlDP 78 (341)
+|||....-.+.....-+++++|+|+.|++.+++|++.| ++. +++++. +.|...++.......++||+|+..|
T Consensus 123 tGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~----~~I~~~~~~~~~~i~~~i~~~~~~fDlivcNP 197 (321)
T PRK11727 123 VGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLN----GAIRLRLQKDSKAIFKGIIHKNERFDATLCNP 197 (321)
T ss_pred CCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCc----CcEEEEEccchhhhhhcccccCCceEEEEeCC
Confidence 455545444443222346999999999999999999999 785 567664 4565555543322356899999999
No 126
>PRK04266 fibrillarin; Provisional
Probab=97.59 E-value=0.00034 Score=64.79 Aligned_cols=92 Identities=17% Similarity=0.072 Sum_probs=64.9
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
||||..++..+...+..+|+++|+++..++.+.++++.. .++.++.+|+......... .+.||+|+.|- ..
T Consensus 81 ~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~-------~nv~~i~~D~~~~~~~~~l-~~~~D~i~~d~-~~ 151 (226)
T PRK04266 81 AASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER-------KNIIPILADARKPERYAHV-VEKVDVIYQDV-AQ 151 (226)
T ss_pred cCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc-------CCcEEEECCCCCcchhhhc-cccCCEEEECC-CC
Confidence 799999999877433358999999999999888888743 1356778888642110101 24699999874 11
Q ss_pred C---HHHHHHHHHhcccCCEEEEE
Q 019408 82 D---SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 82 p---~~fld~al~~v~~gGlL~vt 102 (341)
| ..++..+.+.|++||.|+++
T Consensus 152 p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 152 PNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred hhHHHHHHHHHHHhcCCCcEEEEE
Confidence 2 12467788899999999985
No 127
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.56 E-value=0.00034 Score=61.93 Aligned_cols=100 Identities=21% Similarity=0.204 Sum_probs=56.7
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEe-CC-C
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDI-DS-F 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdl-DP-y 79 (341)
||+|+-||-+++-.++.+|++-|.++ ++++++.|++.|+.. ...++.+...|=.+-+......+..||+|+. |- |
T Consensus 54 aG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~--~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y 130 (173)
T PF10294_consen 54 AGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSL--LDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLY 130 (173)
T ss_dssp -TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT----------EEEE--TTS-HHHHHHS-SSBSEEEEES--S
T ss_pred CccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhcccc--ccccccCcEEEecCcccccccccccCCEEEEecccc
Confidence 79999999999833788999999999 999999999998721 0134554443321111111123458997753 54 4
Q ss_pred CC--CHHHHHHHHHhcccCCEEEEEec
Q 019408 80 GS--DSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 80 gs--p~~fld~al~~v~~gGlL~vt~T 104 (341)
-. ..++++..-++++++|-+.+..+
T Consensus 131 ~~~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 131 DEELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp -GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred hHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 32 12566666678888888776554
No 128
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.54 E-value=0.00029 Score=66.49 Aligned_cols=73 Identities=23% Similarity=0.149 Sum_probs=56.6
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEE----eccHHHHHHHhhhcCCcccEEEe
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVT----HFDANRVLSECYLKREFFDLIDI 76 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~----~~DA~~~l~~~~~~~~~fDvIdl 76 (341)
++|||..++-.+...+-..|+|+|.|+.|+.+..+|++.+++. +.+.++ ..|+..-.. ....++|++.-
T Consensus 156 gtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~----g~i~v~~~~me~d~~~~~~---l~~~~~dllvs 228 (328)
T KOG2904|consen 156 GTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLS----GRIEVIHNIMESDASDEHP---LLEGKIDLLVS 228 (328)
T ss_pred cCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhc----CceEEEecccccccccccc---cccCceeEEec
Confidence 4799999999988655678999999999999999999999885 556666 445543322 22357999999
Q ss_pred CC-CC
Q 019408 77 DS-FG 80 (341)
Q Consensus 77 DP-yg 80 (341)
.| |-
T Consensus 229 NPPYI 233 (328)
T KOG2904|consen 229 NPPYI 233 (328)
T ss_pred CCCcc
Confidence 98 64
No 129
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=97.53 E-value=6.8e-05 Score=74.34 Aligned_cols=57 Identities=23% Similarity=0.176 Sum_probs=52.0
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHH
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLS 62 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~ 62 (341)
|||.|-+++-++++ | .+|++||.|++++++++.|+++|.+. ...++++++||.++|+
T Consensus 257 FaGvGPfa~Pa~kK-~-crV~aNDLNpesik~Lk~ni~lNkv~---~~~iei~Nmda~~Flr 313 (495)
T KOG2078|consen 257 FAGVGPFALPAAKK-G-CRVYANDLNPESIKWLKANIKLNKVD---PSAIEIFNMDAKDFLR 313 (495)
T ss_pred hcCcCccccchhhc-C-cEEEecCCCHHHHHHHHHhccccccc---hhheeeecccHHHHhh
Confidence 79999999999996 5 78999999999999999999999995 3458999999999996
No 130
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.51 E-value=0.00019 Score=72.85 Aligned_cols=95 Identities=15% Similarity=0.077 Sum_probs=71.8
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcC-Cccc-EEEeCC
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKR-EFFD-LIDIDS 78 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~-~~fD-vIdlDP 78 (341)
++|||..|+-.++ ++++|+.++++++|++-+++|++.||++ +.+++++-|.+++..+.... ..=+ ++++||
T Consensus 391 ~CGTG~iglala~--~~~~ViGvEi~~~aV~dA~~nA~~Ngis-----Na~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDP 463 (534)
T KOG2187|consen 391 CCGTGTIGLALAR--GVKRVIGVEISPDAVEDAEKNAQINGIS-----NATFIVGQAEDLFPSLLTPCCDSETLVAIIDP 463 (534)
T ss_pred eecCCceehhhhc--cccceeeeecChhhcchhhhcchhcCcc-----ceeeeecchhhccchhcccCCCCCceEEEECC
Confidence 5899999987764 8999999999999999999999999994 78899999999988765431 1235 889999
Q ss_pred --CCCCHHHHHHHHHhcc-cCCEEEEEe
Q 019408 79 --FGSDSSFLRTVFNAVK-RDGLLYLTS 103 (341)
Q Consensus 79 --ygsp~~fld~al~~v~-~gGlL~vt~ 103 (341)
=|--..+ ..+++..+ ..-+++++|
T Consensus 464 pR~Glh~~~-ik~l~~~~~~~rlvyvSC 490 (534)
T KOG2187|consen 464 PRKGLHMKV-IKALRAYKNPRRLVYVSC 490 (534)
T ss_pred CcccccHHH-HHHHHhccCccceEEEEc
Confidence 2322223 34444444 566888865
No 131
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=97.50 E-value=0.00059 Score=63.85 Aligned_cols=93 Identities=19% Similarity=0.186 Sum_probs=74.5
Q ss_pred ccccHhHHHHhhh-CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 2 CGCGIRSLRYLAE-AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 2 agsG~rgir~a~e-~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
.|||.++.-.|.- ....+|+..|+.++-.+.+++|++..++. +.+++..+|+.+.... +.||.|+||=--
T Consensus 103 tGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~----d~v~~~~~Dv~~~~~~-----~~vDav~LDmp~ 173 (256)
T COG2519 103 TGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLG----DRVTLKLGDVREGIDE-----EDVDAVFLDLPD 173 (256)
T ss_pred cCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccc----cceEEEeccccccccc-----cccCEEEEcCCC
Confidence 4788888777743 23478999999999999999999988884 4577788999877643 489999999622
Q ss_pred CCHHHHHHHHHhcccCCEEEEEec
Q 019408 81 SDSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 81 sp~~fld~al~~v~~gGlL~vt~T 104 (341)
|-.+++.+-.+|++||.+++-+.
T Consensus 174 -PW~~le~~~~~Lkpgg~~~~y~P 196 (256)
T COG2519 174 -PWNVLEHVSDALKPGGVVVVYSP 196 (256)
T ss_pred -hHHHHHHHHHHhCCCcEEEEEcC
Confidence 34679999999999999997543
No 132
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=97.49 E-value=0.0003 Score=65.45 Aligned_cols=94 Identities=19% Similarity=0.184 Sum_probs=66.8
Q ss_pred ccccHhHHHHhhhCCC-CEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC--
Q 019408 2 CGCGIRSLRYLAEAKA-DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga-~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-- 78 (341)
||||..+++.+...+. .+|+++|+|+.-++..++.++..+. .+++.+++||.++-. ..+.||+|.+==
T Consensus 56 ~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~-----~~i~~v~~da~~lp~----~d~sfD~v~~~fgl 126 (233)
T PF01209_consen 56 CGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGL-----QNIEFVQGDAEDLPF----PDNSFDAVTCSFGL 126 (233)
T ss_dssp -TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT-------SEEEEE-BTTB--S-----TT-EEEEEEES-G
T ss_pred CChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCC-----CCeeEEEcCHHHhcC----CCCceeEEEHHhhH
Confidence 7999999999875443 5899999999999999999997766 378899999987532 246899996421
Q ss_pred --CCCCHHHHHHHHHhcccCCEEEEEec
Q 019408 79 --FGSDSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 79 --ygsp~~fld~al~~v~~gGlL~vt~T 104 (341)
+..+...+....+.||+||.+++...
T Consensus 127 rn~~d~~~~l~E~~RVLkPGG~l~ile~ 154 (233)
T PF01209_consen 127 RNFPDRERALREMYRVLKPGGRLVILEF 154 (233)
T ss_dssp GG-SSHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HhhCCHHHHHHHHHHHcCCCeEEEEeec
Confidence 22234677888999999999997654
No 133
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.47 E-value=0.00048 Score=64.10 Aligned_cols=90 Identities=21% Similarity=0.173 Sum_probs=56.6
Q ss_pred hHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CCC--CH
Q 019408 7 RSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FGS--DS 83 (341)
Q Consensus 7 rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-ygs--p~ 83 (341)
.||-.+.....++|+.+|+++.-++.|++.++..++ .++..+.|..+-|-... ..+||+++.|| |.- -.
T Consensus 57 tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl------~i~~~~~DlR~~LP~~~--~~~fD~f~TDPPyT~~G~~ 128 (243)
T PF01861_consen 57 TSLALALTGLPKRITVVDIDERLLDFINRVAEEEGL------PIEAVHYDLRDPLPEEL--RGKFDVFFTDPPYTPEGLK 128 (243)
T ss_dssp HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--------EEEE---TTS---TTT--SS-BSEEEE---SSHHHHH
T ss_pred HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC------ceEEEEecccccCCHHH--hcCCCEEEeCCCCCHHHHH
Confidence 456666644568999999999999999999999988 48889999998886543 35899999999 542 13
Q ss_pred HHHHHHHHhcccCC-EEEEEec
Q 019408 84 SFLRTVFNAVKRDG-LLYLTST 104 (341)
Q Consensus 84 ~fld~al~~v~~gG-lL~vt~T 104 (341)
-|+.+++++|+..| ..++..|
T Consensus 129 LFlsRgi~~Lk~~g~~gy~~~~ 150 (243)
T PF01861_consen 129 LFLSRGIEALKGEGCAGYFGFT 150 (243)
T ss_dssp HHHHHHHHTB-STT-EEEEEE-
T ss_pred HHHHHHHHHhCCCCceEEEEEe
Confidence 57889999999777 5555443
No 134
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.46 E-value=0.0011 Score=63.33 Aligned_cols=95 Identities=21% Similarity=0.154 Sum_probs=72.7
Q ss_pred ccccHhHHHHhhhCC-CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 2 CGCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 2 agsG~rgir~a~e~g-a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
||-|.-+...+.-.+ -..|+++|+++.-++.+++|++..|+. .+.+.+.|+........ +..||.|.+|+--
T Consensus 94 AapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-----~v~~~~~D~~~~~~~~~--~~~fd~VlvDaPC 166 (283)
T PF01189_consen 94 AAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF-----NVIVINADARKLDPKKP--ESKFDRVLVDAPC 166 (283)
T ss_dssp CTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S-----SEEEEESHHHHHHHHHH--TTTEEEEEEECSC
T ss_pred cCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc-----eEEEEeecccccccccc--ccccchhhcCCCc
Confidence 788888887766433 578999999999999999999999883 67777899998865442 3369999999842
Q ss_pred CCH--------------------------HHHHHHHHhc----ccCCEEEEEec
Q 019408 81 SDS--------------------------SFLRTVFNAV----KRDGLLYLTST 104 (341)
Q Consensus 81 sp~--------------------------~fld~al~~v----~~gGlL~vt~T 104 (341)
|.. ..|+.|++.+ ++||.|.- +|
T Consensus 167 Sg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvY-sT 219 (283)
T PF01189_consen 167 SGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVY-ST 219 (283)
T ss_dssp CCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEE-EE
T ss_pred cchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEE-Ee
Confidence 211 2335888999 99999885 55
No 135
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=97.45 E-value=0.00057 Score=67.03 Aligned_cols=90 Identities=13% Similarity=0.110 Sum_probs=68.6
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||||..++.+++..+..+|+++|.|+..++.+++|...+ +++++.+|+.++- .....||+|+...
T Consensus 122 cGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~--------~i~~i~gD~e~lp----~~~~sFDvVIs~~~L~ 189 (340)
T PLN02490 122 GGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK--------ECKIIEGDAEDLP----FPTDYADRYVSAGSIE 189 (340)
T ss_pred cCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhcc--------CCeEEeccHHhCC----CCCCceeEEEEcChhh
Confidence 699999999887544568999999999999999987633 3457889987531 2245799888754
Q ss_pred -CCCCHHHHHHHHHhcccCCEEEEEe
Q 019408 79 -FGSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 -ygsp~~fld~al~~v~~gGlL~vt~ 103 (341)
+..+...++.+.+.|++||.+++..
T Consensus 190 ~~~d~~~~L~e~~rvLkPGG~LvIi~ 215 (340)
T PLN02490 190 YWPDPQRGIKEAYRVLKIGGKACLIG 215 (340)
T ss_pred hCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 2234567888999999999999853
No 136
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=97.44 E-value=0.00042 Score=65.37 Aligned_cols=90 Identities=14% Similarity=0.133 Sum_probs=66.4
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEe-CC-C
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDI-DS-F 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdl-DP-y 79 (341)
||+|..+...+...+ .+|+++|+|+..++.+++++... .++.+.+.|+... ......||+|.. |- +
T Consensus 61 cG~G~~a~~la~~~~-~~v~giD~s~~~~~~a~~~~~~~-------~~i~~~~~D~~~~----~~~~~~FD~V~s~~~l~ 128 (263)
T PTZ00098 61 SGLGGGCKYINEKYG-AHVHGVDICEKMVNIAKLRNSDK-------NKIEFEANDILKK----DFPENTFDMIYSRDAIL 128 (263)
T ss_pred CCCChhhHHHHhhcC-CEEEEEECCHHHHHHHHHHcCcC-------CceEEEECCcccC----CCCCCCeEEEEEhhhHH
Confidence 689998887776434 47999999999999999987531 3567788887632 122457999987 43 1
Q ss_pred C----CCHHHHHHHHHhcccCCEEEEEe
Q 019408 80 G----SDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 g----sp~~fld~al~~v~~gGlL~vt~ 103 (341)
. .+..++..+.+.|++||.|.++.
T Consensus 129 h~~~~d~~~~l~~i~r~LkPGG~lvi~d 156 (263)
T PTZ00098 129 HLSYADKKKLFEKCYKWLKPNGILLITD 156 (263)
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 1 23467788889999999999854
No 137
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.43 E-value=0.00017 Score=64.64 Aligned_cols=86 Identities=22% Similarity=0.213 Sum_probs=66.4
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEe---CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDI---DS 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdl---DP 78 (341)
||||+++.-++. .|++|++++.||.-..++++|+..++. ++++++.+||..+=. ++.|+|.. |-
T Consensus 41 aGsGiLs~~Aa~--~A~rViAiE~dPk~a~~a~eN~~v~g~-----~n~evv~gDA~~y~f------e~ADvvicEmlDT 107 (252)
T COG4076 41 AGSGILSVVAAH--AAERVIAIEKDPKRARLAEENLHVPGD-----VNWEVVVGDARDYDF------ENADVVICEMLDT 107 (252)
T ss_pred CCcchHHHHHHh--hhceEEEEecCcHHHHHhhhcCCCCCC-----cceEEEecccccccc------cccceeHHHHhhH
Confidence 799999999887 389999999999999999999998887 478999999987532 24687742 21
Q ss_pred ---CCCCHHHHHHHHHhcccCCEEE
Q 019408 79 ---FGSDSSFLRTVFNAVKRDGLLY 100 (341)
Q Consensus 79 ---ygsp~~fld~al~~v~~gGlL~ 100 (341)
--.-.|-+.++++.|+.++-+.
T Consensus 108 aLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 108 ALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred HhhcccccHHHHHHHHHhhcCCccc
Confidence 0002366778888888877665
No 138
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=97.43 E-value=0.00088 Score=63.15 Aligned_cols=96 Identities=15% Similarity=0.143 Sum_probs=68.4
Q ss_pred ccccHhHHHHhhhCCC-CEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC--
Q 019408 2 CGCGIRSLRYLAEAKA-DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga-~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-- 78 (341)
||||..++..+...+. .+|+++|+|++.++.++++....... ...++++.++|+.++ ....+.||+|.+-=
T Consensus 82 cGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~--~~~~i~~~~~d~~~l----p~~~~sfD~V~~~~~l 155 (261)
T PLN02233 82 CGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKS--CYKNIEWIEGDATDL----PFDDCYFDAITMGYGL 155 (261)
T ss_pred CcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhc--cCCCeEEEEcccccC----CCCCCCEeEEEEeccc
Confidence 7999988877764343 48999999999999998876421100 013578889998754 22345799997631
Q ss_pred --CCCCHHHHHHHHHhcccCCEEEEEe
Q 019408 79 --FGSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 --ygsp~~fld~al~~v~~gGlL~vt~ 103 (341)
+..+..++..+.+.|++||.|++..
T Consensus 156 ~~~~d~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 156 RNVVDRLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred ccCCCHHHHHHHHHHHcCcCcEEEEEE
Confidence 2234577889999999999998753
No 139
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.39 E-value=0.00029 Score=68.53 Aligned_cols=89 Identities=26% Similarity=0.247 Sum_probs=72.8
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
||||+.|+-+|+ +||.+|+++|.|.-| +..++.++.|+++ +.++++++.+.++ ++ .-++.|+|+-.=.|.
T Consensus 69 cGtGILS~F~ak-AGA~~V~aVe~S~ia-~~a~~iv~~N~~~----~ii~vi~gkvEdi--~L--P~eKVDiIvSEWMGy 138 (346)
T KOG1499|consen 69 CGTGILSMFAAK-AGARKVYAVEASSIA-DFARKIVKDNGLE----DVITVIKGKVEDI--EL--PVEKVDIIVSEWMGY 138 (346)
T ss_pred CCccHHHHHHHH-hCcceEEEEechHHH-HHHHHHHHhcCcc----ceEEEeecceEEE--ec--CccceeEEeehhhhH
Confidence 799999999999 799999999999998 9999999999995 6789999988876 33 247899999887665
Q ss_pred CH---HHHHHHH----HhcccCCEEE
Q 019408 82 DS---SFLRTVF----NAVKRDGLLY 100 (341)
Q Consensus 82 p~---~fld~al----~~v~~gGlL~ 100 (341)
.- ..+|+.+ +-|++||+++
T Consensus 139 ~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 139 FLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHHHhhhhhhhhhhhhhccCCCceEc
Confidence 31 2345554 4589999998
No 140
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=97.39 E-value=0.00039 Score=64.57 Aligned_cols=86 Identities=22% Similarity=0.169 Sum_probs=63.5
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C-
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F- 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y- 79 (341)
||+|..+..++. .| .+|+++|+|+.+++..++|... ..++++|+..+- .....||+|.... +
T Consensus 51 cG~G~~~~~l~~-~~-~~v~~~D~s~~~l~~a~~~~~~----------~~~~~~d~~~~~----~~~~~fD~V~s~~~l~ 114 (251)
T PRK10258 51 CGPGWMSRYWRE-RG-SQVTALDLSPPMLAQARQKDAA----------DHYLAGDIESLP----LATATFDLAWSNLAVQ 114 (251)
T ss_pred CCCCHHHHHHHH-cC-CeEEEEECCHHHHHHHHhhCCC----------CCEEEcCcccCc----CCCCcEEEEEECchhh
Confidence 689988777665 56 5799999999999999887531 235678876532 2245799998865 2
Q ss_pred --CCCHHHHHHHHHhcccCCEEEEEe
Q 019408 80 --GSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 --gsp~~fld~al~~v~~gGlL~vt~ 103 (341)
..+..++..+.+.+++||.++++.
T Consensus 115 ~~~d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 115 WCGNLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred hcCCHHHHHHHHHHHcCCCeEEEEEe
Confidence 234567888899999999999853
No 141
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=97.29 E-value=0.00073 Score=61.13 Aligned_cols=113 Identities=18% Similarity=0.192 Sum_probs=73.8
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||.|.+.-+.|. + .++++++|+|+.|++..++-+. +. ..+++.+.|.-.+. ...+||+|++=-
T Consensus 52 Cs~G~lT~~LA~-r-Cd~LlavDis~~Al~~Ar~Rl~--~~-----~~V~~~~~dvp~~~-----P~~~FDLIV~SEVlY 117 (201)
T PF05401_consen 52 CSIGVLTERLAP-R-CDRLLAVDISPRALARARERLA--GL-----PHVEWIQADVPEFW-----PEGRFDLIVLSEVLY 117 (201)
T ss_dssp -TTSHHHHHHGG-G-EEEEEEEES-HHHHHHHHHHTT--T------SSEEEEES-TTT--------SS-EEEEEEES-GG
T ss_pred CCccHHHHHHHH-h-hCceEEEeCCHHHHHHHHHhcC--CC-----CCeEEEECcCCCCC-----CCCCeeEEEEehHhH
Confidence 578999999876 4 5889999999999999999776 33 36889999987654 346899987765
Q ss_pred CCCCHH----HHHHHHHhcccCCEEEEEecCCCCCCCCCchhHHhhhccccCCCCCchhhhHHHHHHHHHHH
Q 019408 79 FGSDSS----FLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVRE 146 (341)
Q Consensus 79 ygsp~~----fld~al~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~~~~~~E~~lR~ll~~i~~~ 146 (341)
|-++.+ +++....+|++||.|.+ +| .....|.+ . -|..|.+.++..+.++
T Consensus 118 YL~~~~~L~~~l~~l~~~L~pgG~LV~-g~-------~rd~~c~~-w---------gh~~ga~tv~~~~~~~ 171 (201)
T PF05401_consen 118 YLDDAEDLRAALDRLVAALAPGGHLVF-GH-------ARDANCRR-W---------GHAAGAETVLEMLQEH 171 (201)
T ss_dssp GSSSHHHHHHHHHHHHHTEEEEEEEEE-EE-------E-HHHHHH-T---------T-S--HHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCEEEE-EE-------ecCCcccc-c---------CcccchHHHHHHHHHH
Confidence 444433 56677789999999997 32 23445555 2 3556777666655543
No 142
>PRK08317 hypothetical protein; Provisional
Probab=97.29 E-value=0.0014 Score=59.18 Aligned_cols=94 Identities=16% Similarity=0.189 Sum_probs=70.2
Q ss_pred ccccHhHHHHhhhCC-CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 2 CGCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 2 agsG~rgir~a~e~g-a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
||+|..++.++...+ ..+|+++|+|+..++.+++|..... .++++...|+..+- .....||+|...- +
T Consensus 28 ~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~------~~~~~~~~d~~~~~----~~~~~~D~v~~~~~~ 97 (241)
T PRK08317 28 CGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLG------PNVEFVRGDADGLP----FPDGSFDAVRSDRVL 97 (241)
T ss_pred CCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCC------CceEEEecccccCC----CCCCCceEEEEechh
Confidence 789999998887432 4689999999999999999843221 35677788876431 1235799998864 2
Q ss_pred ---CCCHHHHHHHHHhcccCCEEEEEecC
Q 019408 80 ---GSDSSFLRTVFNAVKRDGLLYLTSTD 105 (341)
Q Consensus 80 ---gsp~~fld~al~~v~~gGlL~vt~TD 105 (341)
..+..++..+.++|++||.|.+...+
T Consensus 98 ~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 98 QHLEDPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred hccCCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 33567888999999999999987654
No 143
>PRK06922 hypothetical protein; Provisional
Probab=97.29 E-value=0.0013 Score=69.14 Aligned_cols=95 Identities=18% Similarity=0.185 Sum_probs=70.0
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
||+|..+...+......+|+++|+|+.+++.+++|+..++. ++.++++|+.++-.. .....||+|+.-+ +.
T Consensus 427 CGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~------~ie~I~gDa~dLp~~--fedeSFDvVVsn~vLH 498 (677)
T PRK06922 427 AGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR------SWNVIKGDAINLSSS--FEKESVDTIVYSSILH 498 (677)
T ss_pred CCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC------CeEEEEcchHhCccc--cCCCCEEEEEEchHHH
Confidence 79999988887643345899999999999999999875543 467789999874211 1245799998654 11
Q ss_pred ----------------CCHHHHHHHHHhcccCCEEEEEec
Q 019408 81 ----------------SDSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 81 ----------------sp~~fld~al~~v~~gGlL~vt~T 104 (341)
.+..++..+.+.|++||.+.+...
T Consensus 499 ~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 499 ELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred hhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 124667788899999999998543
No 144
>COG3286 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.28 E-value=0.0012 Score=58.92 Aligned_cols=74 Identities=18% Similarity=0.245 Sum_probs=49.7
Q ss_pred HHHHHHHhhcccCCCCCCcceehhHHHhhcCCCCCCHHHHHHHHHHCCCEEeeeecCCCceecCCCHHHHHHHHHhhhh
Q 019408 259 LEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNSPSLKTMMSAVQKEGYVASRSHIASNAIKTNCPMVACIRIAKELQG 337 (341)
Q Consensus 259 ~~~ll~~~~~e~~~~~pp~yy~~~~l~~~~k~~~p~~~~~~~~L~~~Gy~as~tH~~~~~iKTdAp~~~i~~i~~~~~~ 337 (341)
++.+....+.+...+.-+ -|++..++. .+.+..|.+.++.+|+-+||++-.- .+ =|||||||+++.++.+++.+
T Consensus 57 irel~~~vr~r~~~~~~~-ly~l~~~~~-~a~p~Vp~~vl~daLk~~GyrVevr--~~-~l~T~ap~~ev~E~vreLse 130 (204)
T COG3286 57 IRELHRRVRRRLYPDRQG-LYTLYRIFE-EASPNVPPDVLIDALKLLGYRVEVR--GG-ELKTNAPWSEVVELVRELSE 130 (204)
T ss_pred HHHHHHHHHhhhccCccc-eEeeHhHHH-hhcCCCCHHHHHHHHHhCCceEEee--Cc-eeecCCCHHHHHHHHHHHHH
Confidence 344444443333233323 466665544 3445456899999999999997642 22 29999999999999998874
No 145
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=97.28 E-value=0.00043 Score=64.99 Aligned_cols=93 Identities=23% Similarity=0.232 Sum_probs=66.9
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCC-CccEEEEeccHHHHHHHhhhcCCcccEEEe-CC-
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGD-EKRWVVTHFDANRVLSECYLKREFFDLIDI-DS- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~-~~~~~v~~~DA~~~l~~~~~~~~~fDvIdl-DP- 78 (341)
||+|+.++-.|+. |+ .|+.+|+++++++.+++-.+.+-+..++ .-+++..+.|+..+ ..+||.|.. +=
T Consensus 98 CGgGLLSepLArl-ga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~-------~~~fDaVvcsevl 168 (282)
T KOG1270|consen 98 CGGGLLSEPLARL-GA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL-------TGKFDAVVCSEVL 168 (282)
T ss_pred cCccccchhhHhh-CC-eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc-------ccccceeeeHHHH
Confidence 7999999999994 75 6999999999999999986654332000 01244556666543 236997742 11
Q ss_pred --CCCCHHHHHHHHHhcccCCEEEEEe
Q 019408 79 --FGSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 --ygsp~~fld~al~~v~~gGlL~vt~ 103 (341)
+..|..|++...+.+++||-|.+|.
T Consensus 169 eHV~dp~~~l~~l~~~lkP~G~lfitt 195 (282)
T KOG1270|consen 169 EHVKDPQEFLNCLSALLKPNGRLFITT 195 (282)
T ss_pred HHHhCHHHHHHHHHHHhCCCCceEeee
Confidence 3335699999999999999999954
No 146
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=97.27 E-value=0.0015 Score=58.70 Aligned_cols=90 Identities=18% Similarity=0.201 Sum_probs=68.2
Q ss_pred ccccHhHHHHhhhCCC--CEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeC--
Q 019408 2 CGCGIRSLRYLAEAKA--DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDID-- 77 (341)
Q Consensus 2 agsG~rgir~a~e~ga--~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlD-- 77 (341)
+|+|..+..++.. +. .+++++|+|+.+++.+++|+. .. .++++..+|+.+.. .....||+|.+.
T Consensus 48 ~G~G~~~~~~~~~-~~~~~~~~~iD~~~~~~~~~~~~~~---~~----~~i~~~~~d~~~~~----~~~~~~D~i~~~~~ 115 (223)
T TIGR01934 48 CGTGDLAIELAKS-APDRGKVTGVDFSSEMLEVAKKKSE---LP----LNIEFIQADAEALP----FEDNSFDAVTIAFG 115 (223)
T ss_pred CCCChhHHHHHHh-cCCCceEEEEECCHHHHHHHHHHhc---cC----CCceEEecchhcCC----CCCCcEEEEEEeee
Confidence 6899999888874 44 489999999999999999886 11 35677889987643 123579998652
Q ss_pred --CCCCCHHHHHHHHHhcccCCEEEEEe
Q 019408 78 --SFGSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 78 --Pygsp~~fld~al~~v~~gGlL~vt~ 103 (341)
.+..+..+++.+.+.|++||.+.+..
T Consensus 116 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 116 LRNVTDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred eCCcccHHHHHHHHHHHcCCCcEEEEEE
Confidence 23345677889999999999999743
No 147
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.26 E-value=0.00019 Score=68.80 Aligned_cols=96 Identities=18% Similarity=0.170 Sum_probs=66.6
Q ss_pred CccccHhHHHHhhh-------CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccE
Q 019408 1 MCGCGIRSLRYLAE-------AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDL 73 (341)
Q Consensus 1 fagsG~rgir~a~e-------~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDv 73 (341)
.||||.+-+++... .....++.+|+++.++.+.+.|+.+.+.. .....+.++|.+..-. .....+||+
T Consensus 54 acGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~---~~~~~i~~~d~l~~~~--~~~~~~~D~ 128 (311)
T PF02384_consen 54 ACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID---NSNINIIQGDSLENDK--FIKNQKFDV 128 (311)
T ss_dssp T-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH---CBGCEEEES-TTTSHS--CTST--EEE
T ss_pred hhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc---cccccccccccccccc--ccccccccc
Confidence 48999998777651 24567999999999999999999887653 1233577888754321 112458999
Q ss_pred EEeCC-CCCC------------------------HHHHHHHHHhcccCCEEEE
Q 019408 74 IDIDS-FGSD------------------------SSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 74 IdlDP-ygsp------------------------~~fld~al~~v~~gGlL~v 101 (341)
|+..| ||.. ..|+..+++.|++||.+++
T Consensus 129 ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~ 181 (311)
T PF02384_consen 129 IIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAI 181 (311)
T ss_dssp EEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEE
T ss_pred ccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeE
Confidence 99999 8754 1488899999999998775
No 148
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=97.24 E-value=0.00085 Score=53.42 Aligned_cols=86 Identities=16% Similarity=0.142 Sum_probs=61.1
Q ss_pred ccccHhHHHHhhhC--CC-CEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEe-C
Q 019408 2 CGCGIRSLRYLAEA--KA-DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDI-D 77 (341)
Q Consensus 2 agsG~rgir~a~e~--ga-~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdl-D 77 (341)
||+|......+.-. |. .+++++|+|+++++.++++.+..+. ++++++.|+.++-. ...+||+|+. .
T Consensus 6 cG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~------~~~~~~~D~~~l~~----~~~~~D~v~~~~ 75 (101)
T PF13649_consen 6 CGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP------KVRFVQADARDLPF----SDGKFDLVVCSG 75 (101)
T ss_dssp -TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT------TSEEEESCTTCHHH----HSSSEEEEEE-T
T ss_pred cCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC------ceEEEECCHhHCcc----cCCCeeEEEEcC
Confidence 68888777776532 43 7899999999999999999987554 46789999987532 2458999988 3
Q ss_pred C---CCCC---HHHHHHHHHhcccCC
Q 019408 78 S---FGSD---SSFLRTVFNAVKRDG 97 (341)
Q Consensus 78 P---ygsp---~~fld~al~~v~~gG 97 (341)
- |-++ ..+++...+.+++||
T Consensus 76 ~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 76 LSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp TGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 3 3322 345677778888887
No 149
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=97.24 E-value=0.0019 Score=64.32 Aligned_cols=86 Identities=19% Similarity=0.203 Sum_probs=65.4
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C-
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F- 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y- 79 (341)
||+|..++.+++..|+ +|+++|+|++.++.+++|++ ++ .+++...|+..+ ...||.|..-. |
T Consensus 176 cG~G~~a~~la~~~g~-~V~giDlS~~~l~~A~~~~~--~l------~v~~~~~D~~~l-------~~~fD~Ivs~~~~e 239 (383)
T PRK11705 176 CGWGGLARYAAEHYGV-SVVGVTISAEQQKLAQERCA--GL------PVEIRLQDYRDL-------NGQFDRIVSVGMFE 239 (383)
T ss_pred CCccHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc--cC------eEEEEECchhhc-------CCCCCEEEEeCchh
Confidence 6899999999875555 79999999999999999985 32 356778887643 24799886433 2
Q ss_pred --CC--CHHHHHHHHHhcccCCEEEEEe
Q 019408 80 --GS--DSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 --gs--p~~fld~al~~v~~gGlL~vt~ 103 (341)
|. ...++..+.+.|++||.+.++.
T Consensus 240 hvg~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 240 HVGPKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred hCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 21 1367788889999999999854
No 150
>PRK00536 speE spermidine synthase; Provisional
Probab=97.22 E-value=0.0027 Score=60.10 Aligned_cols=88 Identities=11% Similarity=0.044 Sum_probs=61.6
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHc--CCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSI--ERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n--~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
|-|.-.=|.++- .++|+++|||++.+++.++-+-.. .++ +.+++++. .+.+ ...++||||++|- |
T Consensus 82 GDGg~~REvLkh--~~~v~mVeID~~Vv~~~k~~lP~~~~~~~---DpRv~l~~-----~~~~--~~~~~fDVIIvDs~~ 149 (262)
T PRK00536 82 FDLELAHQLFKY--DTHVDFVQADEKILDSFISFFPHFHEVKN---NKNFTHAK-----QLLD--LDIKKYDLIICLQEP 149 (262)
T ss_pred CchHHHHHHHCc--CCeeEEEECCHHHHHHHHHHCHHHHHhhc---CCCEEEee-----hhhh--ccCCcCCEEEEcCCC
Confidence 456655566663 248999999999999999944422 232 24666664 1222 1236899999994 5
Q ss_pred CCCHHHHHHHHHhcccCCEEEEEec
Q 019408 80 GSDSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 80 gsp~~fld~al~~v~~gGlL~vt~T 104 (341)
. ..|....-++|++||++++.++
T Consensus 150 ~--~~fy~~~~~~L~~~Gi~v~Qs~ 172 (262)
T PRK00536 150 D--IHKIDGLKRMLKEDGVFISVAK 172 (262)
T ss_pred C--hHHHHHHHHhcCCCcEEEECCC
Confidence 5 3888888999999999998654
No 151
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=97.20 E-value=0.0014 Score=61.27 Aligned_cols=85 Identities=9% Similarity=0.030 Sum_probs=62.8
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C-
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F- 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y- 79 (341)
||+|..+..++......+|+.+|+|+..++.++++ ++ ++.++|+..+. ....||+|+... +
T Consensus 38 cG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~----~~--------~~~~~d~~~~~-----~~~~fD~v~~~~~l~ 100 (255)
T PRK14103 38 CGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER----GV--------DARTGDVRDWK-----PKPDTDVVVSNAALQ 100 (255)
T ss_pred CCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc----CC--------cEEEcChhhCC-----CCCCceEEEEehhhh
Confidence 79999988777632234799999999999988662 23 46788987542 134799999876 2
Q ss_pred --CCCHHHHHHHHHhcccCCEEEEEe
Q 019408 80 --GSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 --gsp~~fld~al~~v~~gGlL~vt~ 103 (341)
..+..++..+.+.|++||.+.++.
T Consensus 101 ~~~d~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 101 WVPEHADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred hCCCHHHHHHHHHHhCCCCcEEEEEc
Confidence 223567778889999999999853
No 152
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=97.20 E-value=0.0035 Score=61.04 Aligned_cols=91 Identities=20% Similarity=0.211 Sum_probs=65.5
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeC-C-C
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDID-S-F 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlD-P-y 79 (341)
||+|..+++++. .|+..|+.+|.|+..+...+...+..+.. .++++...|+..+- . ...||+|+.= = |
T Consensus 131 CG~G~~~~~la~-~g~~~V~GiD~S~~~l~q~~a~~~~~~~~----~~i~~~~~d~e~lp----~-~~~FD~V~s~~vl~ 200 (322)
T PRK15068 131 CGNGYHMWRMLG-AGAKLVVGIDPSQLFLCQFEAVRKLLGND----QRAHLLPLGIEQLP----A-LKAFDTVFSMGVLY 200 (322)
T ss_pred cCCcHHHHHHHH-cCCCEEEEEcCCHHHHHHHHHHHHhcCCC----CCeEEEeCCHHHCC----C-cCCcCEEEECChhh
Confidence 799999999988 58888999999998765433332222211 35778888886541 1 4579999862 1 1
Q ss_pred --CCCHHHHHHHHHhcccCCEEEEE
Q 019408 80 --GSDSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 80 --gsp~~fld~al~~v~~gGlL~vt 102 (341)
.+|..++..+.+.|++||.|.++
T Consensus 201 H~~dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 201 HRRSPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred ccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 23567888999999999999875
No 153
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=97.19 E-value=0.0024 Score=58.97 Aligned_cols=92 Identities=12% Similarity=0.180 Sum_probs=68.3
Q ss_pred ccccHhHHHHhhhC--CCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeC-C
Q 019408 2 CGCGIRSLRYLAEA--KADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDID-S 78 (341)
Q Consensus 2 agsG~rgir~a~e~--ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlD-P 78 (341)
||+|..++..+... ...+|+.+|+|+.+++.+++|++..+.. .+++++++|+..+- ...+|+|++. .
T Consensus 62 cG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~----~~v~~~~~d~~~~~------~~~~d~v~~~~~ 131 (239)
T TIGR00740 62 CSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSE----IPVEILCNDIRHVE------IKNASMVILNFT 131 (239)
T ss_pred CCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC----CCeEEEECChhhCC------CCCCCEEeeecc
Confidence 68999888887631 2357999999999999999999865432 46788999997642 1258977653 2
Q ss_pred --CCC---CHHHHHHHHHhcccCCEEEEEe
Q 019408 79 --FGS---DSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 --ygs---p~~fld~al~~v~~gGlL~vt~ 103 (341)
|-. +..++..+.+.|++||.++++.
T Consensus 132 l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCeEEEEee
Confidence 332 2457788889999999999864
No 154
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=97.16 E-value=0.0025 Score=61.83 Aligned_cols=92 Identities=18% Similarity=0.180 Sum_probs=65.1
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||+|...++++. .|+.+|+.+|.|+..+...+..-+..+. ...+.+...|+.++-. ...||+|+.==
T Consensus 130 CG~G~~~~~~~~-~g~~~v~GiDpS~~ml~q~~~~~~~~~~----~~~v~~~~~~ie~lp~-----~~~FD~V~s~gvL~ 199 (314)
T TIGR00452 130 CGSGYHMWRMLG-HGAKSLVGIDPTVLFLCQFEAVRKLLDN----DKRAILEPLGIEQLHE-----LYAFDTVFSMGVLY 199 (314)
T ss_pred cCCcHHHHHHHH-cCCCEEEEEcCCHHHHHHHHHHHHHhcc----CCCeEEEECCHHHCCC-----CCCcCEEEEcchhh
Confidence 799999999988 5888999999999887654332222111 1345667777765421 23799997532
Q ss_pred -CCCCHHHHHHHHHhcccCCEEEEEe
Q 019408 79 -FGSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 -ygsp~~fld~al~~v~~gGlL~vt~ 103 (341)
..+|..++....+.|++||.|+++.
T Consensus 200 H~~dp~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 200 HRKSPLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred ccCCHHHHHHHHHHhcCCCCEEEEEE
Confidence 2456678889999999999999853
No 155
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=97.10 E-value=0.0027 Score=57.46 Aligned_cols=100 Identities=19% Similarity=0.163 Sum_probs=74.6
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEE---EeCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLI---DIDS 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvI---dlDP 78 (341)
||.|-+-+..|.+.--..++.+|++...+..+.+.+...++ .++.++++||..+|..... ....|-| +-||
T Consensus 26 ~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l-----~Nv~~~~~da~~~l~~~~~-~~~v~~i~i~FPDP 99 (195)
T PF02390_consen 26 CGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL-----KNVRFLRGDARELLRRLFP-PGSVDRIYINFPDP 99 (195)
T ss_dssp -TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT-----SSEEEEES-CTTHHHHHST-TTSEEEEEEES---
T ss_pred CCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc-----cceEEEEccHHHHHhhccc-CCchheEEEeCCCC
Confidence 68999999999974345689999999999999999998888 4788999999999987644 3467755 5589
Q ss_pred CCC---------CHHHHHHHHHhcccCCEEEEEecCCCC
Q 019408 79 FGS---------DSSFLRTVFNAVKRDGLLYLTSTDGYS 108 (341)
Q Consensus 79 ygs---------p~~fld~al~~v~~gGlL~vt~TD~~~ 108 (341)
.-+ ..+|++...+.|++||.|.+ .||-..
T Consensus 100 WpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~-~TD~~~ 137 (195)
T PF02390_consen 100 WPKKRHHKRRLVNPEFLELLARVLKPGGELYF-ATDVEE 137 (195)
T ss_dssp --SGGGGGGSTTSHHHHHHHHHHEEEEEEEEE-EES-HH
T ss_pred CcccchhhhhcCCchHHHHHHHHcCCCCEEEE-EeCCHH
Confidence 322 34899999999999999998 887644
No 156
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=97.10 E-value=0.0015 Score=59.11 Aligned_cols=89 Identities=22% Similarity=0.202 Sum_probs=66.1
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||+|..+...+......+++++|+|+..++..++++.. ++.++..|+.... ...+.||+|+..=
T Consensus 43 ~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~---------~~~~~~~d~~~~~----~~~~~fD~vi~~~~l~ 109 (240)
T TIGR02072 43 CGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSE---------NVQFICGDAEKLP----LEDSSFDLIVSNLALQ 109 (240)
T ss_pred CCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCC---------CCeEEecchhhCC----CCCCceeEEEEhhhhh
Confidence 79999998887742235689999999999988876541 3456788887542 1245799998763
Q ss_pred -CCCCHHHHHHHHHhcccCCEEEEEe
Q 019408 79 -FGSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 -ygsp~~fld~al~~v~~gGlL~vt~ 103 (341)
...+..+++.+.+.|++||.++++.
T Consensus 110 ~~~~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 110 WCDDLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred hccCHHHHHHHHHHHcCCCcEEEEEe
Confidence 1235678889999999999999853
No 157
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=97.08 E-value=0.0022 Score=61.00 Aligned_cols=89 Identities=19% Similarity=0.244 Sum_probs=66.1
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccE-EEeCC--
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDL-IDIDS-- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDv-IdlDP-- 78 (341)
||.|..++++|.+.|+ +|+.+.+|++-++.+++-++..++. +++++...|..++ ..+||. |=++-
T Consensus 71 cGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~----~~v~v~~~D~~~~-------~~~fD~IvSi~~~E 138 (273)
T PF02353_consen 71 CGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLE----DRVEVRLQDYRDL-------PGKFDRIVSIEMFE 138 (273)
T ss_dssp -TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSS----STEEEEES-GGG----------S-SEEEEESEGG
T ss_pred CCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCC----CceEEEEeecccc-------CCCCCEEEEEechh
Confidence 6899999999986576 6999999999999999999988885 6788999997653 228995 55555
Q ss_pred -CCCC--HHHHHHHHHhcccCCEEEEE
Q 019408 79 -FGSD--SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 79 -ygsp--~~fld~al~~v~~gGlL~vt 102 (341)
+|.. ..|+..+-+.|++||.+.+.
T Consensus 139 hvg~~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 139 HVGRKNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp GTCGGGHHHHHHHHHHHSETTEEEEEE
T ss_pred hcChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 3422 36788888999999999964
No 158
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.08 E-value=0.0011 Score=59.96 Aligned_cols=91 Identities=20% Similarity=0.154 Sum_probs=69.0
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC--C
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--F 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--y 79 (341)
||||+-+|-+++ .||..|++.|++|.+...|+.|++.|++ .+.++..|..- +...||+|.+-- |
T Consensus 88 agsgLvaIAaa~-aGA~~v~a~d~~P~~~~ai~lNa~angv------~i~~~~~d~~g-------~~~~~Dl~LagDlfy 153 (218)
T COG3897 88 AGSGLVAIAAAR-AGAAEVVAADIDPWLEQAIRLNAAANGV------SILFTHADLIG-------SPPAFDLLLAGDLFY 153 (218)
T ss_pred cccChHHHHHHH-hhhHHHHhcCCChHHHHHhhcchhhccc------eeEEeeccccC-------CCcceeEEEeeceec
Confidence 799999999999 7999999999999999999999999987 46677777642 356899887755 6
Q ss_pred CCCHHHHHH---HHHhcccCCEEEEEecCCCC
Q 019408 80 GSDSSFLRT---VFNAVKRDGLLYLTSTDGYS 108 (341)
Q Consensus 80 gsp~~fld~---al~~v~~gGlL~vt~TD~~~ 108 (341)
.. ++.+. -+..++..|.-.+-.+-.++
T Consensus 154 ~~--~~a~~l~~~~~~l~~~g~~vlvgdp~R~ 183 (218)
T COG3897 154 NH--TEADRLIPWKDRLAEAGAAVLVGDPGRA 183 (218)
T ss_pred Cc--hHHHHHHHHHHHHHhCCCEEEEeCCCCC
Confidence 65 44333 34456666666664554443
No 159
>PF09840 DUF2067: Uncharacterized protein conserved in archaea (DUF2067); InterPro: IPR019202 This family of archaeal proteins, have no known function.
Probab=97.01 E-value=0.0037 Score=56.45 Aligned_cols=75 Identities=20% Similarity=0.332 Sum_probs=58.0
Q ss_pred HHHHHHHhhcccCCCCCCcceehhHHHhhcCCCCCCHHHHHHHHHHCCCEEeeeecCCCceecCCCHHHHHHHHHhhhhh
Q 019408 259 LEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNSPSLKTMMSAVQKEGYVASRSHIASNAIKTNCPMVACIRIAKELQGC 338 (341)
Q Consensus 259 ~~~ll~~~~~e~~~~~pp~yy~~~~l~~~~k~~~p~~~~~~~~L~~~Gy~as~tH~~~~~iKTdAp~~~i~~i~~~~~~~ 338 (341)
++.+.+.++.... ..+.+=|.++.|.+..+ .+.|++.++++|+-+||++. +...-|+||||++++.++++++.+.
T Consensus 54 Ik~~~~~vr~k~~-~~g~~~y~l~~i~r~a~-~~vp~d~L~~~L~~~G~~ae---~~~~~i~T~a~~eev~~l~~~Lse~ 128 (190)
T PF09840_consen 54 IKELVRRVRSKYN-KRGLYRYSLDDIFREAG-YPVPPDLLVDALKLLGYKAE---YREDVIKTDAPLEEVVELAERLSEI 128 (190)
T ss_pred HHHHHHHHHHHhc-cCCceEEcHHHHHHHcC-CCCCHHHHHHHHHhCCCeeE---EeCCeEEecCCHHHHHHHHHHHHHH
Confidence 4555555553111 23456799999999999 56668999999999999986 4555999999999999999988753
No 160
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=97.00 E-value=0.00073 Score=61.09 Aligned_cols=93 Identities=19% Similarity=0.106 Sum_probs=60.8
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeC---C
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDID---S 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlD---P 78 (341)
||.|--|+-.|+ .|.+ |+++|+|+.|++.+++-++..++ .++....|.+.+- -.+.||+|... .
T Consensus 39 cG~GRNalyLA~-~G~~-VtAvD~s~~al~~l~~~a~~~~l------~i~~~~~Dl~~~~-----~~~~yD~I~st~v~~ 105 (192)
T PF03848_consen 39 CGEGRNALYLAS-QGFD-VTAVDISPVALEKLQRLAEEEGL------DIRTRVADLNDFD-----FPEEYDFIVSTVVFM 105 (192)
T ss_dssp -TTSHHHHHHHH-TT-E-EEEEESSHHHHHHHHHHHHHTT-------TEEEEE-BGCCBS------TTTEEEEEEESSGG
T ss_pred CCCcHHHHHHHH-CCCe-EEEEECCHHHHHHHHHHHhhcCc------eeEEEEecchhcc-----ccCCcCEEEEEEEec
Confidence 688989988887 6875 99999999999999998888777 3677788865432 13579999643 1
Q ss_pred CCCCH---HHHHHHHHhcccCCEEEE-EecCCC
Q 019408 79 FGSDS---SFLRTVFNAVKRDGLLYL-TSTDGY 107 (341)
Q Consensus 79 ygsp~---~fld~al~~v~~gGlL~v-t~TD~~ 107 (341)
|-.+. ..++.--+.+++||+..+ |..++.
T Consensus 106 fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~ 138 (192)
T PF03848_consen 106 FLQRELRPQIIENMKAATKPGGYNLIVTFMETP 138 (192)
T ss_dssp GS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--S
T ss_pred cCCHHHHHHHHHHHHhhcCCcEEEEEEEecccC
Confidence 33221 123333456889999775 665543
No 161
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=96.98 E-value=0.0016 Score=59.71 Aligned_cols=91 Identities=15% Similarity=0.093 Sum_probs=65.4
Q ss_pred ccccHhHHHHhhhCCC-CEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 2 CGCGIRSLRYLAEAKA-DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga-~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
+|||..+--.+.-.|. .+|+.+|+++..++..++|++.++. .++++.++|...-+.. ...||.|++..-.
T Consensus 81 tGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~-----~nv~~~~gdg~~g~~~----~apfD~I~v~~a~ 151 (209)
T PF01135_consen 81 TGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI-----DNVEVVVGDGSEGWPE----EAPFDRIIVTAAV 151 (209)
T ss_dssp -TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT-----HSEEEEES-GGGTTGG----G-SEEEEEESSBB
T ss_pred CCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc-----CceeEEEcchhhcccc----CCCcCEEEEeecc
Confidence 6888887766653343 4699999999999999999999887 4788999998754432 3479999999721
Q ss_pred CCHHHH-HHHHHhcccCCEEEEEec
Q 019408 81 SDSSFL-RTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 81 sp~~fl-d~al~~v~~gGlL~vt~T 104 (341)
+-+ +.-++.|++||.|.+--.
T Consensus 152 ---~~ip~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 152 ---PEIPEALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp ---SS--HHHHHTEEEEEEEEEEES
T ss_pred ---chHHHHHHHhcCCCcEEEEEEc
Confidence 222 233467999999997443
No 162
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.0017 Score=59.38 Aligned_cols=85 Identities=16% Similarity=0.203 Sum_probs=65.4
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
+|||--+--.++ . +.+|+.+|+.+.-++.+++|++.++.. ++.+.++|...-+.. ...||.|++.--..
T Consensus 81 tGsGY~aAvla~-l-~~~V~siEr~~~L~~~A~~~L~~lg~~-----nV~v~~gDG~~G~~~----~aPyD~I~Vtaaa~ 149 (209)
T COG2518 81 TGSGYQAAVLAR-L-VGRVVSIERIEELAEQARRNLETLGYE-----NVTVRHGDGSKGWPE----EAPYDRIIVTAAAP 149 (209)
T ss_pred CCchHHHHHHHH-H-hCeEEEEEEcHHHHHHHHHHHHHcCCC-----ceEEEECCcccCCCC----CCCcCEEEEeeccC
Confidence 577777665554 2 348999999999999999999999984 589999999866543 35899999986211
Q ss_pred --CHHHHHHHHHhcccCCEEEE
Q 019408 82 --DSSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 82 --p~~fld~al~~v~~gGlL~v 101 (341)
|.++ ++.|++||.|.+
T Consensus 150 ~vP~~L----l~QL~~gGrlv~ 167 (209)
T COG2518 150 EVPEAL----LDQLKPGGRLVI 167 (209)
T ss_pred CCCHHH----HHhcccCCEEEE
Confidence 3344 456999999996
No 163
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.96 E-value=0.0024 Score=66.09 Aligned_cols=76 Identities=14% Similarity=0.128 Sum_probs=51.2
Q ss_pred CccccHhHHHHhhhC-------C-CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHh-hhcCCcc
Q 019408 1 MCGCGIRSLRYLAEA-------K-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSEC-YLKREFF 71 (341)
Q Consensus 1 fagsG~rgir~a~e~-------g-a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~-~~~~~~f 71 (341)
.||||.+.+.++... + ...+++.|+++.+++.++.|+...+. ....+.+.|........ .....+|
T Consensus 39 ~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~-----~~~~i~~~d~l~~~~~~~~~~~~~f 113 (524)
T TIGR02987 39 CCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL-----LEINVINFNSLSYVLLNIESYLDLF 113 (524)
T ss_pred CCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC-----CCceeeecccccccccccccccCcc
Confidence 389999999887642 1 14689999999999999999987652 12345555543221100 1112479
Q ss_pred cEEEeCC-CCC
Q 019408 72 DLIDIDS-FGS 81 (341)
Q Consensus 72 DvIdlDP-ygs 81 (341)
|+|+-.| |+.
T Consensus 114 D~IIgNPPy~~ 124 (524)
T TIGR02987 114 DIVITNPPYGR 124 (524)
T ss_pred cEEEeCCCccc
Confidence 9999999 874
No 164
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=96.96 E-value=0.0034 Score=57.08 Aligned_cols=64 Identities=19% Similarity=0.189 Sum_probs=51.0
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEe-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDI-DS 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdl-DP 78 (341)
||+|..+..++. .++ +|+++|+|+++++.+++++..++.. +++++.+.|+.... ..||+|+. +.
T Consensus 64 cG~G~~~~~la~-~~~-~v~gvD~s~~~i~~a~~~~~~~~~~----~~i~~~~~d~~~~~-------~~fD~ii~~~~ 128 (219)
T TIGR02021 64 CGTGLLSIELAK-RGA-IVKAVDISEQMVQMARNRAQGRDVA----GNVEFEVNDLLSLC-------GEFDIVVCMDV 128 (219)
T ss_pred CCCCHHHHHHHH-CCC-EEEEEECCHHHHHHHHHHHHhcCCC----CceEEEECChhhCC-------CCcCEEEEhhH
Confidence 799999998887 454 7999999999999999999877652 35778889986532 47998864 44
No 165
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=96.88 E-value=0.004 Score=56.80 Aligned_cols=84 Identities=13% Similarity=-0.025 Sum_probs=57.4
Q ss_pred ccccHhHHHHhhhCCC-CEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHH--HHHh--hhcCCcccEEEe
Q 019408 2 CGCGIRSLRYLAEAKA-DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRV--LSEC--YLKREFFDLIDI 76 (341)
Q Consensus 2 agsG~rgir~a~e~ga-~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~--l~~~--~~~~~~fDvIdl 76 (341)
||||..+..++...+. ..|+++|+++. ++.. .++++++|+.+. +.+. ......||+|..
T Consensus 60 ~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~~-----~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S 123 (209)
T PRK11188 60 AAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPIV-----GVDFLQGDFRDELVLKALLERVGDSKVQVVMS 123 (209)
T ss_pred ccCCHHHHHHHHHcCCCceEEEEecccc-----------cCCC-----CcEEEecCCCChHHHHHHHHHhCCCCCCEEec
Confidence 7999999888875443 58999999981 2231 367889998764 2211 112457999998
Q ss_pred CC---C-CCCH-----------HHHHHHHHhcccCCEEEE
Q 019408 77 DS---F-GSDS-----------SFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 77 DP---y-gsp~-----------~fld~al~~v~~gGlL~v 101 (341)
|+ + |.+. ..++.+.+.|++||.+.+
T Consensus 124 ~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi 163 (209)
T PRK11188 124 DMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVV 163 (209)
T ss_pred CCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 75 2 3321 245677789999999998
No 166
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=96.81 E-value=0.0022 Score=62.19 Aligned_cols=139 Identities=21% Similarity=0.153 Sum_probs=91.0
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
||||+++.-++. +||++|++++.|.-| +.+++=++.|++. +++.|+.+-..+. .-+++.|+|+-.|.|.
T Consensus 186 aGSGILS~FAaq-AGA~~vYAvEAS~MA-qyA~~Lv~~N~~~----~rItVI~GKiEdi-----eLPEk~DviISEPMG~ 254 (517)
T KOG1500|consen 186 AGSGILSFFAAQ-AGAKKVYAVEASEMA-QYARKLVASNNLA----DRITVIPGKIEDI-----ELPEKVDVIISEPMGY 254 (517)
T ss_pred CCccHHHHHHHH-hCcceEEEEehhHHH-HHHHHHHhcCCcc----ceEEEccCccccc-----cCchhccEEEeccchh
Confidence 799999999998 799999999998543 4555555666664 6888998877654 1257899999999876
Q ss_pred C---HHHHH---HHHHhcccCCEEEEEecCCCCCCCCCchhHHhhhccccCCCCCchhhhHHHHHHHHHHHHHhcCCcEE
Q 019408 82 D---SSFLR---TVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVS 155 (341)
Q Consensus 82 p---~~fld---~al~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~~~~~~E~~lR~ll~~i~~~Aa~~~~~i~ 155 (341)
- ...++ -|-+-+++.|-+.=|-.|. .-.|-+....|- |+.- -...+.+-+=||.-+.
T Consensus 255 mL~NERMLEsYl~Ark~l~P~GkMfPT~gdi----HlAPFsDE~Ly~----------E~~n---kAnFWyQq~fyGVdLt 317 (517)
T KOG1500|consen 255 MLVNERMLESYLHARKWLKPNGKMFPTVGDI----HLAPFSDEQLYV----------EQFN---KANFWYQQNFYGVDLT 317 (517)
T ss_pred hhhhHHHHHHHHHHHhhcCCCCcccCcccce----eecccchHHHHH----------HHHh---hhhhhhhhccccccch
Confidence 2 12333 2337799999988665443 111222222221 1111 1234555666788888
Q ss_pred EEEecccCCCCeEEE
Q 019408 156 PLFSYYSYHGPVFRV 170 (341)
Q Consensus 156 Pl~s~~~~~dhy~Rv 170 (341)
||.--. ++-|+|-
T Consensus 318 ~L~g~a--~~eYFrQ 330 (517)
T KOG1500|consen 318 PLYGSA--HQEYFRQ 330 (517)
T ss_pred hhhhhh--hhhhhcc
Confidence 887777 6767663
No 167
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=96.79 E-value=0.005 Score=54.78 Aligned_cols=84 Identities=15% Similarity=0.033 Sum_probs=56.1
Q ss_pred ccccHhHHHHhhhC-CCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHH-----HHHhhhcCCcccEEE
Q 019408 2 CGCGIRSLRYLAEA-KADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRV-----LSECYLKREFFDLID 75 (341)
Q Consensus 2 agsG~rgir~a~e~-ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~-----l~~~~~~~~~fDvId 75 (341)
||||..+..++... +..+|+++|+|+.. .. ..+++++.|+.+. +.+. ....+||+|+
T Consensus 41 ~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-----~~i~~~~~d~~~~~~~~~l~~~-~~~~~~D~V~ 103 (188)
T TIGR00438 41 AAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-----ENVDFIRGDFTDEEVLNKIRER-VGDDKVDVVM 103 (188)
T ss_pred CCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC-----CCceEEEeeCCChhHHHHHHHH-hCCCCccEEE
Confidence 69999988887752 45689999999853 11 1245566676432 1111 1245799999
Q ss_pred eCC----CCCC-----------HHHHHHHHHhcccCCEEEEE
Q 019408 76 IDS----FGSD-----------SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 76 lDP----ygsp-----------~~fld~al~~v~~gGlL~vt 102 (341)
.|+ +|.+ ..++..+.+.|++||.+++.
T Consensus 104 ~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 104 SDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred cCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 984 2321 24567788999999999985
No 168
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=96.79 E-value=0.0057 Score=58.86 Aligned_cols=77 Identities=14% Similarity=0.123 Sum_probs=60.0
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
+|+|..+...+. .+ .+|+++|+|+.+++.+++|+..++.. .+++++++|+.+.- -..||+|+.+| |.
T Consensus 45 ~G~G~LT~~Ll~-~~-~~V~avEiD~~li~~l~~~~~~~~~~----~~v~ii~~Dal~~~------~~~~d~VvaNlPY~ 112 (294)
T PTZ00338 45 PGTGNLTEKLLQ-LA-KKVIAIEIDPRMVAELKKRFQNSPLA----SKLEVIEGDALKTE------FPYFDVCVANVPYQ 112 (294)
T ss_pred CchHHHHHHHHH-hC-CcEEEEECCHHHHHHHHHHHHhcCCC----CcEEEEECCHhhhc------ccccCEEEecCCcc
Confidence 689999988876 33 57999999999999999999876642 47899999998642 13689999997 76
Q ss_pred CCHHHHHHHH
Q 019408 81 SDSSFLRTVF 90 (341)
Q Consensus 81 sp~~fld~al 90 (341)
-.+|.+-..+
T Consensus 113 Istpil~~ll 122 (294)
T PTZ00338 113 ISSPLVFKLL 122 (294)
T ss_pred cCcHHHHHHH
Confidence 5556655544
No 169
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=96.77 E-value=0.00013 Score=57.68 Aligned_cols=91 Identities=20% Similarity=0.240 Sum_probs=52.1
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeC-C--
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDID-S-- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlD-P-- 78 (341)
||+|......+.+....+++++|+|+.+++.+++.+...... .....+.+..+.... ..++.||+|+.= -
T Consensus 5 cG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~--~~~~~fD~V~~~~vl~ 77 (99)
T PF08242_consen 5 CGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGND-----NFERLRFDVLDLFDY--DPPESFDLVVASNVLH 77 (99)
T ss_dssp TTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT--------EEEEE--SSS---C--CC----SEEEEE-TTS
T ss_pred ccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCc-----ceeEEEeecCChhhc--ccccccceehhhhhHh
Confidence 689999988887644567999999999999888888876532 222233332222221 112489988543 2
Q ss_pred -CCCCHHHHHHHHHhcccCCEE
Q 019408 79 -FGSDSSFLRTVFNAVKRDGLL 99 (341)
Q Consensus 79 -ygsp~~fld~al~~v~~gGlL 99 (341)
...+..++..+.+.|++||.|
T Consensus 78 ~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 78 HLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --S-HHHHHHHHTTT-TSS-EE
T ss_pred hhhhHHHHHHHHHHHcCCCCCC
Confidence 122456777888899999986
No 170
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=96.69 E-value=0.0071 Score=58.04 Aligned_cols=92 Identities=13% Similarity=0.015 Sum_probs=68.7
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
+|+|..++++++...--+++.+|. +.+++.+++|++..++. ++++++.+|+++.- . ..+|+|++-=
T Consensus 158 ~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~----~rv~~~~~d~~~~~--~----~~~D~v~~~~~lh 226 (306)
T TIGR02716 158 GGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVA----DRMRGIAVDIYKES--Y----PEADAVLFCRILY 226 (306)
T ss_pred CchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCcc----ceEEEEecCccCCC--C----CCCCEEEeEhhhh
Confidence 699999999998632347999997 78999999999988874 57889999987521 1 2369876432
Q ss_pred -CCC--CHHHHHHHHHhcccCCEEEEEec
Q 019408 79 -FGS--DSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 79 -ygs--p~~fld~al~~v~~gGlL~vt~T 104 (341)
+.. ....+..+.+.|++||.|.+...
T Consensus 227 ~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 227 SANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred cCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 111 12467788899999999998653
No 171
>PTZ00146 fibrillarin; Provisional
Probab=96.64 E-value=0.11 Score=49.92 Aligned_cols=91 Identities=14% Similarity=0.008 Sum_probs=60.7
Q ss_pred ccccHhHHHHhhhCC-CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 2 CGCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 2 agsG~rgir~a~e~g-a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
||||...+.++.--| ...|+++|+++.+.+-+.+-++.. .++.++..|+..-.. .....+.||+|++|=.
T Consensus 141 aG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r-------~NI~~I~~Da~~p~~-y~~~~~~vDvV~~Dva- 211 (293)
T PTZ00146 141 AASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR-------PNIVPIIEDARYPQK-YRMLVPMVDVIFADVA- 211 (293)
T ss_pred CcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-------CCCEEEECCccChhh-hhcccCCCCEEEEeCC-
Confidence 799999998887433 358999999998775444433321 134667888864321 1111236999999972
Q ss_pred CCH---HHHHHHHHhcccCCEEEE
Q 019408 81 SDS---SFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 81 sp~---~fld~al~~v~~gGlL~v 101 (341)
.|. .++..|-+.|++||.++|
T Consensus 212 ~pdq~~il~~na~r~LKpGG~~vI 235 (293)
T PTZ00146 212 QPDQARIVALNAQYFLKNGGHFII 235 (293)
T ss_pred CcchHHHHHHHHHHhccCCCEEEE
Confidence 222 345567779999999998
No 172
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=96.63 E-value=0.024 Score=54.48 Aligned_cols=113 Identities=15% Similarity=0.005 Sum_probs=74.6
Q ss_pred ccccHhHHHHhhhC-CCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhc-CCcccEEEeCC-
Q 019408 2 CGCGIRSLRYLAEA-KADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLK-REFFDLIDIDS- 78 (341)
Q Consensus 2 agsG~rgir~a~e~-ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~-~~~fDvIdlDP- 78 (341)
||||......+... ...+++++|+|++.++..+++++.... ..++..+++|..+.+...... .....+++++-
T Consensus 72 cGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p----~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~ 147 (301)
T TIGR03438 72 SGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYP----QLEVHGICADFTQPLALPPEPAAGRRLGFFPGST 147 (301)
T ss_pred CCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCC----CceEEEEEEcccchhhhhcccccCCeEEEEeccc
Confidence 69999998888741 135799999999999999999875321 125677899988755332110 11234666664
Q ss_pred CCC-----CHHHHHHHHHhcccCCEEEEEecCCCCCCCCCchhHHhhhcc
Q 019408 79 FGS-----DSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYGA 123 (341)
Q Consensus 79 ygs-----p~~fld~al~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~ 123 (341)
++. ...|+...-+.|++||.+.+ ..|. + +.+..-.+.|..
T Consensus 148 ~~~~~~~e~~~~L~~i~~~L~pgG~~li-g~d~---~-~~~~~~~~aY~d 192 (301)
T TIGR03438 148 IGNFTPEEAVAFLRRIRQLLGPGGGLLI-GVDL---V-KDPAVLEAAYND 192 (301)
T ss_pred ccCCCHHHHHHHHHHHHHhcCCCCEEEE-eccC---C-CCHHHHHHhhcC
Confidence 442 23467777889999999998 4444 3 344555665643
No 173
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=96.59 E-value=0.012 Score=56.18 Aligned_cols=89 Identities=19% Similarity=0.223 Sum_probs=71.5
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEE-EeCC--
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLI-DIDS-- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvI-dlDP-- 78 (341)
||-|.++|++|.+-|+ +|+.+++|++..+.+++=++.-|++ .++++.-.|-.++ .++||-| =+.=
T Consensus 81 CGWG~l~~~aA~~y~v-~V~GvTlS~~Q~~~~~~r~~~~gl~----~~v~v~l~d~rd~-------~e~fDrIvSvgmfE 148 (283)
T COG2230 81 CGWGGLAIYAAEEYGV-TVVGVTLSEEQLAYAEKRIAARGLE----DNVEVRLQDYRDF-------EEPFDRIVSVGMFE 148 (283)
T ss_pred CChhHHHHHHHHHcCC-EEEEeeCCHHHHHHHHHHHHHcCCC----cccEEEecccccc-------ccccceeeehhhHH
Confidence 6889999999997655 6999999999999999999988884 5788888887765 2459955 4444
Q ss_pred -CCC--CHHHHHHHHHhcccCCEEEEE
Q 019408 79 -FGS--DSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 79 -ygs--p~~fld~al~~v~~gGlL~vt 102 (341)
+|. -..|+..+-+.|++||.+.+.
T Consensus 149 hvg~~~~~~ff~~~~~~L~~~G~~llh 175 (283)
T COG2230 149 HVGKENYDDFFKKVYALLKPGGRMLLH 175 (283)
T ss_pred HhCcccHHHHHHHHHhhcCCCceEEEE
Confidence 453 237888999999999999863
No 174
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.57 E-value=0.0086 Score=53.61 Aligned_cols=68 Identities=19% Similarity=0.193 Sum_probs=55.9
Q ss_pred ccccHhHHHHhhhCC-CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 2 CGCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 2 agsG~rgir~a~e~g-a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
||||+.+=-.++-.| -....+.|+||.|.+..++.++.|++ ++.+++.|.+.-|+. ++.||+...| |
T Consensus 52 ~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~------~~~~V~tdl~~~l~~-----~~VDvLvfNPPY 120 (209)
T KOG3191|consen 52 CGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV------HIDVVRTDLLSGLRN-----ESVDVLVFNPPY 120 (209)
T ss_pred CCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC------ccceeehhHHhhhcc-----CCccEEEECCCc
Confidence 799998877766533 35568999999999999999999986 467899999988764 6899999988 6
Q ss_pred C
Q 019408 80 G 80 (341)
Q Consensus 80 g 80 (341)
-
T Consensus 121 V 121 (209)
T KOG3191|consen 121 V 121 (209)
T ss_pred C
Confidence 4
No 175
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=96.52 E-value=0.0017 Score=52.19 Aligned_cols=77 Identities=16% Similarity=0.091 Sum_probs=45.1
Q ss_pred CEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---CCCCHHHHHHHHHhcc
Q 019408 18 DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS---FGSDSSFLRTVFNAVK 94 (341)
Q Consensus 18 ~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP---ygsp~~fld~al~~v~ 94 (341)
.+++++|..+. .+..+++++..++. .+++++++|..+.+.+.. ..+||+|++|= |......+..+++.++
T Consensus 24 ~~~~~vD~~~~-~~~~~~~~~~~~~~----~~~~~~~g~s~~~l~~~~--~~~~dli~iDg~H~~~~~~~dl~~~~~~l~ 96 (106)
T PF13578_consen 24 GKLYSVDPFPG-DEQAQEIIKKAGLS----DRVEFIQGDSPDFLPSLP--DGPIDLIFIDGDHSYEAVLRDLENALPRLA 96 (106)
T ss_dssp ---EEEESS-------------GGG-----BTEEEEES-THHHHHHHH--H--EEEEEEES---HHHHHHHHHHHGGGEE
T ss_pred CCEEEEECCCc-ccccchhhhhcCCC----CeEEEEEcCcHHHHHHcC--CCCEEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 47999999995 33344444434442 468999999999988764 46899999996 3222345667888999
Q ss_pred cCCEEEE
Q 019408 95 RDGLLYL 101 (341)
Q Consensus 95 ~gGlL~v 101 (341)
+||++++
T Consensus 97 ~ggviv~ 103 (106)
T PF13578_consen 97 PGGVIVF 103 (106)
T ss_dssp EEEEEEE
T ss_pred CCeEEEE
Confidence 9999986
No 176
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=96.51 E-value=0.0009 Score=63.91 Aligned_cols=93 Identities=23% Similarity=0.198 Sum_probs=66.0
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
+||-|.+-+-++...||+.|++.|.||.+++.+++|++.|++. +...++.+|.+..- .....|-|.|-=--
T Consensus 202 YAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~----~r~~i~~gd~R~~~-----~~~~AdrVnLGLlP 272 (351)
T KOG1227|consen 202 YAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVM----DRCRITEGDNRNPK-----PRLRADRVNLGLLP 272 (351)
T ss_pred hcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchH----HHHHhhhccccccC-----ccccchheeecccc
Confidence 5899999995555589999999999999999999999999874 45566777765431 22356877776421
Q ss_pred CCHHHHHHHHHhcc-cCC-EEEEE
Q 019408 81 SDSSFLRTVFNAVK-RDG-LLYLT 102 (341)
Q Consensus 81 sp~~fld~al~~v~-~gG-lL~vt 102 (341)
|...--..|+++|+ +|| +|.|.
T Consensus 273 Sse~~W~~A~k~Lk~eggsilHIH 296 (351)
T KOG1227|consen 273 SSEQGWPTAIKALKPEGGSILHIH 296 (351)
T ss_pred ccccchHHHHHHhhhcCCcEEEEe
Confidence 22222336788887 445 78864
No 177
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=96.43 E-value=0.0063 Score=57.74 Aligned_cols=94 Identities=16% Similarity=0.138 Sum_probs=71.7
Q ss_pred HhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC---C
Q 019408 6 IRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS---D 82 (341)
Q Consensus 6 ~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs---p 82 (341)
+.||-.++-.-+++|..+||++..++.|.+-++..++ ++++++.-|...-|.+..+ ++||++.-||--+ -
T Consensus 164 Ltsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~-----~~ie~~~~Dlr~plpe~~~--~kFDvfiTDPpeTi~al 236 (354)
T COG1568 164 LTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGY-----NNIEAFVFDLRNPLPEDLK--RKFDVFITDPPETIKAL 236 (354)
T ss_pred hhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCc-----cchhheeehhcccChHHHH--hhCCeeecCchhhHHHH
Confidence 4678888743378999999999999999999998888 3577788888887765433 5899999999211 1
Q ss_pred HHHHHHHHHhcccC---CEEEEEecCC
Q 019408 83 SSFLRTVFNAVKRD---GLLYLTSTDG 106 (341)
Q Consensus 83 ~~fld~al~~v~~g---GlL~vt~TD~ 106 (341)
.-|+.+.+..|+.- |+..+|-.+.
T Consensus 237 k~FlgRGI~tLkg~~~aGyfgiT~res 263 (354)
T COG1568 237 KLFLGRGIATLKGEGCAGYFGITRRES 263 (354)
T ss_pred HHHHhccHHHhcCCCccceEeeeeccc
Confidence 25666677777766 8999877644
No 178
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=96.41 E-value=0.008 Score=55.12 Aligned_cols=96 Identities=8% Similarity=0.034 Sum_probs=59.9
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCC-----C-----CCccEEEEeccHHHHHHHhhhcCCc
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGS-----G-----DEKRWVVTHFDANRVLSECYLKREF 70 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~-----~-----~~~~~~v~~~DA~~~l~~~~~~~~~ 70 (341)
.||+|--++-.|. +|. .|+++|+|+.|++.+.+. +++.. + ...++++.++|.+++-... ...
T Consensus 42 GCG~G~da~~LA~-~G~-~V~gvD~S~~Ai~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~---~~~ 113 (213)
T TIGR03840 42 LCGKSLDLAWLAE-QGH-RVLGVELSEIAVEQFFAE---NGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD---LGP 113 (213)
T ss_pred CCCchhHHHHHHh-CCC-eEEEEeCCHHHHHHHHHH---cCCCcceeccccceeeecCceEEEEccCCCCCccc---CCC
Confidence 4799988887776 676 499999999999975331 22100 0 0135778899988753211 236
Q ss_pred ccEEEeCC-CCC--C---HHHHHHHHHhcccCCE-EEEEec
Q 019408 71 FDLIDIDS-FGS--D---SSFLRTVFNAVKRDGL-LYLTST 104 (341)
Q Consensus 71 fDvIdlDP-ygs--p---~~fld~al~~v~~gGl-L~vt~T 104 (341)
||.|+--- |.. | ..++....++|++||. +.+|-+
T Consensus 114 fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~ 154 (213)
T TIGR03840 114 VDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLD 154 (213)
T ss_pred cCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 88663211 110 1 2467788899999996 445443
No 179
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=96.36 E-value=0.014 Score=53.09 Aligned_cols=62 Identities=13% Similarity=0.067 Sum_probs=45.7
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP 78 (341)
||+|......+...+..+++++|+|+++++.+++|+. .+.+.++|+... .....||+|+..=
T Consensus 52 CG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~----------~~~~~~~d~~~~-----~~~~sfD~V~~~~ 113 (204)
T TIGR03587 52 ANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP----------NINIIQGSLFDP-----FKDNFFDLVLTKG 113 (204)
T ss_pred cCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC----------CCcEEEeeccCC-----CCCCCEEEEEECC
Confidence 7999999888764344679999999999999998753 234567787651 1245799998654
No 180
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=96.30 E-value=0.013 Score=59.67 Aligned_cols=92 Identities=16% Similarity=0.062 Sum_probs=64.4
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||+|..+...+. . ..+|+++|+|+.+++..++ .++.. .++++++.|+...- .......||+|+...
T Consensus 46 cG~G~~~~~la~-~-~~~v~giD~s~~~l~~a~~---~~~~~----~~i~~~~~d~~~~~--~~~~~~~fD~I~~~~~l~ 114 (475)
T PLN02336 46 AGIGRFTGELAK-K-AGQVIALDFIESVIKKNES---INGHY----KNVKFMCADVTSPD--LNISDGSVDLIFSNWLLM 114 (475)
T ss_pred CCcCHHHHHHHh-h-CCEEEEEeCCHHHHHHHHH---HhccC----CceEEEEecccccc--cCCCCCCEEEEehhhhHH
Confidence 799999988876 3 4689999999999875433 33321 35678889986421 112245799999987
Q ss_pred CCCC---HHHHHHHHHhcccCCEEEEEec
Q 019408 79 FGSD---SSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 79 ygsp---~~fld~al~~v~~gGlL~vt~T 104 (341)
+-+. ..++....+.|++||+|.+..+
T Consensus 115 ~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~ 143 (475)
T PLN02336 115 YLSDKEVENLAERMVKWLKVGGYIFFRES 143 (475)
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 2221 3567777889999999998543
No 181
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=96.30 E-value=0.036 Score=53.91 Aligned_cols=68 Identities=19% Similarity=0.122 Sum_probs=48.2
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEE-eCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLID-IDS 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvId-lDP 78 (341)
||+|..++.++. .|. +|+++|+|+.+++..++|++.......+...+++...|...+ ...||+|+ .|.
T Consensus 153 cGtG~~a~~la~-~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l-------~~~fD~Vv~~~v 221 (315)
T PLN02585 153 CGTGSLAIPLAL-EGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL-------SGKYDTVTCLDV 221 (315)
T ss_pred CCCCHHHHHHHH-CCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc-------CCCcCEEEEcCE
Confidence 799999999997 464 799999999999999999986421100012456677886432 24799886 344
No 182
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=96.25 E-value=0.0089 Score=55.00 Aligned_cols=94 Identities=10% Similarity=0.041 Sum_probs=60.0
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCC-----C-----CCccEEEEeccHHHHHHHhhhcCCc
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGS-----G-----DEKRWVVTHFDANRVLSECYLKREF 70 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~-----~-----~~~~~~v~~~DA~~~l~~~~~~~~~ 70 (341)
.||+|--++-.|. .|. .|+++|+|+.|++.+.+ .+++.. + ...++++.++|++.+-... ...
T Consensus 45 gCG~G~da~~LA~-~G~-~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~---~~~ 116 (218)
T PRK13255 45 LCGKSLDMLWLAE-QGH-EVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD---LAD 116 (218)
T ss_pred CCCChHhHHHHHh-CCC-eEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCCCccc---CCC
Confidence 4789977777765 676 49999999999997532 222210 0 0135778899998763221 136
Q ss_pred ccEEE-------eCCCCCCHHHHHHHHHhcccCCE-EEEEe
Q 019408 71 FDLID-------IDSFGSDSSFLRTVFNAVKRDGL-LYLTS 103 (341)
Q Consensus 71 fDvId-------lDPygsp~~fld~al~~v~~gGl-L~vt~ 103 (341)
||.|+ +.|=. -..++....++|++||. +.+|.
T Consensus 117 fd~v~D~~~~~~l~~~~-R~~~~~~l~~lL~pgG~~~l~~~ 156 (218)
T PRK13255 117 VDAVYDRAALIALPEEM-RERYVQQLAALLPAGCRGLLVTL 156 (218)
T ss_pred eeEEEehHhHhhCCHHH-HHHHHHHHHHHcCCCCeEEEEEE
Confidence 88776 33300 02667788899999995 44444
No 183
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.16 E-value=0.0036 Score=57.97 Aligned_cols=91 Identities=19% Similarity=0.188 Sum_probs=66.5
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEE---EeCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLI---DIDS 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvI---dlDP 78 (341)
||||+.|.+.=. -+++.+.+|||..-++...+ -++ --...+.|+..++... .+++||+| |+=|
T Consensus 134 CGTGL~G~~lR~--~a~~ltGvDiS~nMl~kA~e----Kg~------YD~L~~Aea~~Fl~~~--~~er~DLi~AaDVl~ 199 (287)
T COG4976 134 CGTGLTGEALRD--MADRLTGVDISENMLAKAHE----KGL------YDTLYVAEAVLFLEDL--TQERFDLIVAADVLP 199 (287)
T ss_pred cCcCcccHhHHH--HHhhccCCchhHHHHHHHHh----ccc------hHHHHHHHHHHHhhhc--cCCcccchhhhhHHH
Confidence 799999988743 36789999999988776655 222 1135789999888654 46799988 4446
Q ss_pred C-CCCHHHHHHHHHhcccCCEEEEEecCC
Q 019408 79 F-GSDSSFLRTVFNAVKRDGLLYLTSTDG 106 (341)
Q Consensus 79 y-gsp~~fld~al~~v~~gGlL~vt~TD~ 106 (341)
| |.-.+++-.+-.++++||++.++.-+.
T Consensus 200 YlG~Le~~~~~aa~~L~~gGlfaFSvE~l 228 (287)
T COG4976 200 YLGALEGLFAGAAGLLAPGGLFAFSVETL 228 (287)
T ss_pred hhcchhhHHHHHHHhcCCCceEEEEeccc
Confidence 5 655567777888999999999854433
No 184
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=96.08 E-value=0.03 Score=50.85 Aligned_cols=62 Identities=18% Similarity=0.066 Sum_probs=48.0
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEe
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDI 76 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdl 76 (341)
||+|..+..++. .+. +|+++|+|+.+++.+++++...+.. +++.+..+|... . ...||+|+.
T Consensus 72 cG~G~~~~~l~~-~~~-~v~~~D~s~~~i~~a~~~~~~~~~~----~~i~~~~~d~~~----~---~~~fD~v~~ 133 (230)
T PRK07580 72 CGVGSLSIPLAR-RGA-KVVASDISPQMVEEARERAPEAGLA----GNITFEVGDLES----L---LGRFDTVVC 133 (230)
T ss_pred CCCCHHHHHHHH-cCC-EEEEEECCHHHHHHHHHHHHhcCCc----cCcEEEEcCchh----c---cCCcCEEEE
Confidence 799999998887 465 4999999999999999999877652 356777888321 1 247998865
No 185
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=96.08 E-value=0.026 Score=56.39 Aligned_cols=81 Identities=25% Similarity=0.407 Sum_probs=61.4
Q ss_pred CCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCC--CC-----C------
Q 019408 16 KADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSF--GS-----D------ 82 (341)
Q Consensus 16 ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPy--gs-----p------ 82 (341)
+-..|+|||.|..-++.++.|+...|+. ...+.+.|...+-... . +..||-|.||-- |+ +
T Consensus 265 n~G~I~AnD~n~~r~~~l~~n~~rlGv~-----ntiv~n~D~~ef~~~~-~-~~~fDRVLLDAPCSGtgvi~K~~~vkt~ 337 (460)
T KOG1122|consen 265 NTGVIFANDSNENRLKSLKANLHRLGVT-----NTIVSNYDGREFPEKE-F-PGSFDRVLLDAPCSGTGVISKDQSVKTN 337 (460)
T ss_pred CCceEEecccchHHHHHHHHHHHHhCCC-----ceEEEccCcccccccc-c-CcccceeeecCCCCCCcccccccccccc
Confidence 3456999999999999999999999984 5678899987553222 1 227999999962 21 0
Q ss_pred -------------HHHHHHHHHhcccCCEEEEEec
Q 019408 83 -------------SSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 83 -------------~~fld~al~~v~~gGlL~vt~T 104 (341)
...+++|+++|+.||+|.- +|
T Consensus 338 k~~~di~~~~~LQr~LllsAi~lv~~GGvLVY-ST 371 (460)
T KOG1122|consen 338 KTVKDILRYAHLQRELLLSAIDLVKAGGVLVY-ST 371 (460)
T ss_pred hhHHHHHHhHHHHHHHHHHHHhhccCCcEEEE-Ee
Confidence 0245699999999999985 66
No 186
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=96.03 E-value=0.033 Score=52.74 Aligned_cols=77 Identities=13% Similarity=0.048 Sum_probs=57.8
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
+|+|..+...+. .+. +|+++|+|+.+++.+++|+.. .+++++++|+.++-.. ...+|.|+-.| |.
T Consensus 51 ~G~G~lt~~L~~-~~~-~v~avE~d~~~~~~~~~~~~~--------~~v~~i~~D~~~~~~~----~~~~~~vv~NlPY~ 116 (272)
T PRK00274 51 PGLGALTEPLLE-RAA-KVTAVEIDRDLAPILAETFAE--------DNLTIIEGDALKVDLS----ELQPLKVVANLPYN 116 (272)
T ss_pred CCccHHHHHHHH-hCC-cEEEEECCHHHHHHHHHhhcc--------CceEEEEChhhcCCHH----HcCcceEEEeCCcc
Confidence 699999999987 455 899999999999999998742 2578899999875211 11158888887 77
Q ss_pred CCHHHHHHHHHh
Q 019408 81 SDSSFLRTVFNA 92 (341)
Q Consensus 81 sp~~fld~al~~ 92 (341)
-.++.+..-+..
T Consensus 117 iss~ii~~~l~~ 128 (272)
T PRK00274 117 ITTPLLFHLLEE 128 (272)
T ss_pred chHHHHHHHHhc
Confidence 667777665543
No 187
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=96.03 E-value=0.023 Score=53.43 Aligned_cols=74 Identities=12% Similarity=0.002 Sum_probs=57.1
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
+|+|..++..+.. + .+|+++|+|+..++.+++|++. . .+++++++|+.++-. ..||.|+-.| |.
T Consensus 38 ~G~G~lt~~L~~~-~-~~v~~vEid~~~~~~l~~~~~~--~-----~~v~ii~~D~~~~~~------~~~d~Vv~NlPy~ 102 (258)
T PRK14896 38 PGKGALTDELAKR-A-KKVYAIELDPRLAEFLRDDEIA--A-----GNVEIIEGDALKVDL------PEFNKVVSNLPYQ 102 (258)
T ss_pred CccCHHHHHHHHh-C-CEEEEEECCHHHHHHHHHHhcc--C-----CCEEEEEeccccCCc------hhceEEEEcCCcc
Confidence 7999999999884 4 5899999999999999999864 2 367899999976421 2479999886 76
Q ss_pred CCHHHHHHHH
Q 019408 81 SDSSFLRTVF 90 (341)
Q Consensus 81 sp~~fld~al 90 (341)
..++.+...+
T Consensus 103 i~s~~~~~l~ 112 (258)
T PRK14896 103 ISSPITFKLL 112 (258)
T ss_pred cCcHHHHHHH
Confidence 5556655444
No 188
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=95.82 E-value=0.011 Score=56.16 Aligned_cols=64 Identities=17% Similarity=0.124 Sum_probs=47.1
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS 78 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP 78 (341)
|||.|..++-+.. .|.+.|+++|+++.|+++.++|.... ++++|..++..... ...+|+|..+|
T Consensus 7 FsG~Gg~~~gl~~-~G~~~v~a~e~~~~a~~~~~~N~~~~-----------~~~~Di~~~~~~~~--~~~~D~l~~gp 70 (275)
T cd00315 7 FAGIGGFRLGLEK-AGFEIVAANEIDKSAAETYEANFPNK-----------LIEGDITKIDEKDF--IPDIDLLTGGF 70 (275)
T ss_pred ccCcchHHHHHHH-cCCEEEEEEeCCHHHHHHHHHhCCCC-----------CccCccccCchhhc--CCCCCEEEeCC
Confidence 8999998666554 68999999999999999999997521 34555555432210 23699999999
No 189
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=95.71 E-value=0.02 Score=54.15 Aligned_cols=102 Identities=15% Similarity=0.116 Sum_probs=61.4
Q ss_pred ccccH----hHHHHhhhCC-----CCEEEEeeCCHHHHHHHHHHHH----HcCCC---------CCC---------CccE
Q 019408 2 CGCGI----RSLRYLAEAK-----ADFVMANDGNDAHRRVILGNLK----SIERG---------SGD---------EKRW 50 (341)
Q Consensus 2 agsG~----rgir~a~e~g-----a~~V~~~Dis~~A~~~i~~N~~----~n~~~---------~~~---------~~~~ 50 (341)
||||- .++..+.... ..+|++.|+|+.+++.+++++- ..++. ..+ ...+
T Consensus 108 CgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V 187 (264)
T smart00138 108 CSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERV 187 (264)
T ss_pred ccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcC
Confidence 67884 4555543211 2479999999999999998751 11110 000 0134
Q ss_pred EEEeccHHHHHHHhhhcCCcccEEEeCC---CCC-C--HHHHHHHHHhcccCCEEEEEecCCC
Q 019408 51 VVTHFDANRVLSECYLKREFFDLIDIDS---FGS-D--SSFLRTVFNAVKRDGLLYLTSTDGY 107 (341)
Q Consensus 51 ~v~~~DA~~~l~~~~~~~~~fDvIdlDP---ygs-p--~~fld~al~~v~~gGlL~vt~TD~~ 107 (341)
++.+.|+.+.- .....||+|+.== |-. + ...+....+.|++||+|++-.+++-
T Consensus 188 ~F~~~dl~~~~----~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~E~~ 246 (264)
T smart00138 188 RFAKHNLLAES----PPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHSESL 246 (264)
T ss_pred EEeeccCCCCC----CccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECcccC
Confidence 55566665421 1235799998721 111 2 1356677789999999999777654
No 190
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=95.69 E-value=0.018 Score=54.33 Aligned_cols=84 Identities=12% Similarity=0.108 Sum_probs=59.0
Q ss_pred ccccHhHHHHhhhC---CCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC
Q 019408 2 CGCGIRSLRYLAEA---KADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS 78 (341)
Q Consensus 2 agsG~rgir~a~e~---ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP 78 (341)
||+|......+... +...|+.+|+|+.+++.++++.. .+.+..+|+.++- .....||+|.. .
T Consensus 94 cG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~----------~~~~~~~d~~~lp----~~~~sfD~I~~-~ 158 (272)
T PRK11088 94 CGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYP----------QVTFCVASSHRLP----FADQSLDAIIR-I 158 (272)
T ss_pred CcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCC----------CCeEEEeecccCC----CcCCceeEEEE-e
Confidence 68999888876531 12369999999999999887531 2456677876531 22457999864 2
Q ss_pred CCCCHHHHHHHHHhcccCCEEEEE
Q 019408 79 FGSDSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 79 ygsp~~fld~al~~v~~gGlL~vt 102 (341)
|. | .++....+.|++||.|++.
T Consensus 159 ~~-~-~~~~e~~rvLkpgG~li~~ 180 (272)
T PRK11088 159 YA-P-CKAEELARVVKPGGIVITV 180 (272)
T ss_pred cC-C-CCHHHHHhhccCCCEEEEE
Confidence 33 3 4466778899999999973
No 191
>PRK11524 putative methyltransferase; Provisional
Probab=95.59 E-value=0.027 Score=53.67 Aligned_cols=52 Identities=23% Similarity=0.342 Sum_probs=40.5
Q ss_pred cEEEEeccHHHHHHHhhhcCCcccEEEeCC-CCCC-------------------HHHHHHHHHhcccCCEEEEE
Q 019408 49 RWVVTHFDANRVLSECYLKREFFDLIDIDS-FGSD-------------------SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 49 ~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-ygsp-------------------~~fld~al~~v~~gGlL~vt 102 (341)
..+++++|+.++|..+ ..+.||+|++|| |+.. ..++..+.+.|++||.+++.
T Consensus 8 ~~~i~~gD~~~~l~~l--~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 8 AKTIIHGDALTELKKI--PSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCEEEeccHHHHHHhc--ccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3468999999999765 346899999998 7531 13556778899999999984
No 192
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=95.52 E-value=0.029 Score=50.38 Aligned_cols=93 Identities=15% Similarity=0.145 Sum_probs=67.8
Q ss_pred ccccHhHHHHhhhCCC-CEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEE------
Q 019408 2 CGCGIRSLRYLAEAKA-DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLI------ 74 (341)
Q Consensus 2 agsG~rgir~a~e~ga-~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvI------ 74 (341)
+|-|.+=.+.++| |- ...+.+|-|+.|+++++.=++.++++ +.+++.+.|...- .. ...+||+|
T Consensus 76 tGNG~~L~~L~~e-gf~~~L~GvDYs~~AV~LA~niAe~~~~~----n~I~f~q~DI~~~-~~---~~~qfdlvlDKGT~ 146 (227)
T KOG1271|consen 76 TGNGHLLFQLAKE-GFQSKLTGVDYSEKAVELAQNIAERDGFS----NEIRFQQLDITDP-DF---LSGQFDLVLDKGTL 146 (227)
T ss_pred CCchHHHHHHHHh-cCCCCccccccCHHHHHHHHHHHHhcCCC----cceeEEEeeccCC-cc---cccceeEEeecCce
Confidence 3566676777886 54 44899999999999977777788885 5577778887653 11 12356655
Q ss_pred ---EeCC---CCCCHHHHHHHHHhcccCCEEEEEe
Q 019408 75 ---DIDS---FGSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 75 ---dlDP---ygsp~~fld~al~~v~~gGlL~vt~ 103 (341)
=|-| -+.+.-|++..=++|++||++.||+
T Consensus 147 DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItS 181 (227)
T KOG1271|consen 147 DAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITS 181 (227)
T ss_pred eeeecCCCCcccceeeehhhHhhccCCCcEEEEEe
Confidence 3444 4556678898889999999999988
No 193
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=95.51 E-value=0.15 Score=47.30 Aligned_cols=101 Identities=18% Similarity=0.093 Sum_probs=77.5
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEE---EeCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLI---DIDS 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvI---dlDP 78 (341)
+|.|-.=+..|.+.--.-.+.+|+....+..+.+=++..++. ++.+++.||..+|..+... ...|=| +-||
T Consensus 57 fG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-----Nlri~~~DA~~~l~~~~~~-~sl~~I~i~FPDP 130 (227)
T COG0220 57 FGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-----NLRLLCGDAVEVLDYLIPD-GSLDKIYINFPDP 130 (227)
T ss_pred CCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-----cEEEEcCCHHHHHHhcCCC-CCeeEEEEECCCC
Confidence 588888899998622234789999999888888888877772 6889999999999876432 245544 6699
Q ss_pred -CCC--------CHHHHHHHHHhcccCCEEEEEecCCCCC
Q 019408 79 -FGS--------DSSFLRTVFNAVKRDGLLYLTSTDGYSS 109 (341)
Q Consensus 79 -ygs--------p~~fld~al~~v~~gGlL~vt~TD~~~l 109 (341)
+.. -.+|++...+.|++||.|.+ +||-..+
T Consensus 131 WpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~-aTD~~~y 169 (227)
T COG0220 131 WPKKRHHKRRLTQPEFLKLYARKLKPGGVLHF-ATDNEEY 169 (227)
T ss_pred CCCccccccccCCHHHHHHHHHHccCCCEEEE-EecCHHH
Confidence 322 23899999999999999997 9987543
No 194
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=95.47 E-value=0.034 Score=47.00 Aligned_cols=82 Identities=21% Similarity=0.226 Sum_probs=55.4
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||+|......+. .|. +|+.+|+|+.+++. .+ . .. ...+..... .....||+|..-=
T Consensus 31 cG~G~~~~~l~~-~~~-~~~g~D~~~~~~~~------~~-~------~~--~~~~~~~~~----~~~~~fD~i~~~~~l~ 89 (161)
T PF13489_consen 31 CGTGSFLRALAK-RGF-EVTGVDISPQMIEK------RN-V------VF--DNFDAQDPP----FPDGSFDLIICNDVLE 89 (161)
T ss_dssp STTSHHHHHHHH-TTS-EEEEEESSHHHHHH------TT-S------EE--EEEECHTHH----CHSSSEEEEEEESSGG
T ss_pred CCCCHHHHHHHH-hCC-EEEEEECCHHHHhh------hh-h------hh--hhhhhhhhh----ccccchhhHhhHHHHh
Confidence 688988777765 577 89999999999998 11 1 11 122222111 2346899986643
Q ss_pred -CCCCHHHHHHHHHhcccCCEEEEEec
Q 019408 79 -FGSDSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 79 -ygsp~~fld~al~~v~~gGlL~vt~T 104 (341)
...+..+++...+.|++||++.++..
T Consensus 90 ~~~d~~~~l~~l~~~LkpgG~l~~~~~ 116 (161)
T PF13489_consen 90 HLPDPEEFLKELSRLLKPGGYLVISDP 116 (161)
T ss_dssp GSSHHHHHHHHHHHCEEEEEEEEEEEE
T ss_pred hcccHHHHHHHHHHhcCCCCEEEEEEc
Confidence 12245778888899999999998654
No 195
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=95.41 E-value=0.037 Score=53.34 Aligned_cols=129 Identities=12% Similarity=-0.012 Sum_probs=64.2
Q ss_pred ccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHc-CCCCCCCccEEEEec-cHHHHHHHhhhcCCcccEEEeCC--C
Q 019408 4 CGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSI-ERGSGDEKRWVVTHF-DANRVLSECYLKREFFDLIDIDS--F 79 (341)
Q Consensus 4 sG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n-~~~~~~~~~~~v~~~-DA~~~l~~~~~~~~~fDvIdlDP--y 79 (341)
|.+..|-.+++.|. +.++.||++.+++.+++|++.| +++ +++++... +...++.......+.||+....| |
T Consensus 114 scIYpLLg~~~~~W-~fvaTdID~~sl~~A~~nv~~N~~L~----~~I~l~~~~~~~~i~~~i~~~~e~~dftmCNPPFy 188 (299)
T PF05971_consen 114 SCIYPLLGAKLYGW-SFVATDIDPKSLESARENVERNPNLE----SRIELRKQKNPDNIFDGIIQPNERFDFTMCNPPFY 188 (299)
T ss_dssp TTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-T----TTEEEEE--ST-SSTTTSTT--S-EEEEEE-----
T ss_pred HHHHHHHhhhhcCC-eEEEecCCHHHHHHHHHHHHhccccc----cceEEEEcCCccccchhhhcccceeeEEecCCccc
Confidence 34445555555554 5889999999999999999999 885 67776643 33333333334457899999999 4
Q ss_pred CCCHHHHHHHHHh---ccc-CCEEEEEecCCCCCCCCCchhHHhhhccccCCCCCchhhhHHHHHHHHHHHHHhcCCcE
Q 019408 80 GSDSSFLRTVFNA---VKR-DGLLYLTSTDGYSSGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHV 154 (341)
Q Consensus 80 gsp~~fld~al~~---v~~-gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~~~~~~E~~lR~ll~~i~~~Aa~~~~~i 154 (341)
.|..+....+-+. ++. +. +.+....-|+ ....+...|=|---|+..++++...++..+
T Consensus 189 ~s~~e~~~~~~~k~~nl~~~~~----~~~~p~~~~~-------------G~~~El~~~GGEv~FV~rMI~ES~~~~~~v 250 (299)
T PF05971_consen 189 SSQEEAEAGTERKWKNLGRPNK----KRSPPKLNFT-------------GQSNELWCEGGEVAFVKRMIKESLQLKDQV 250 (299)
T ss_dssp SS-------------------------------------------------TTTTHHHHTHHHHHHHHHHHHHHHGGGE
T ss_pred cChhhhcccccccccccccccc----cccCccccCC-------------CCcceEEcCCccHHHHHHHHHHHHHhCCCc
Confidence 4432221111111 110 00 0000001121 122455566777889999999999886654
No 196
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=95.15 E-value=0.015 Score=54.04 Aligned_cols=74 Identities=19% Similarity=0.182 Sum_probs=44.0
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHc--CCCCCC--CccEEEEeccHHHHHHHhhhcCCcccEEEeC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSI--ERGSGD--EKRWVVTHFDANRVLSECYLKREFFDLIDID 77 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n--~~~~~~--~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlD 77 (341)
+|-|.=++-++. .|. +|++++.||....+++.=++.- +.+..+ ..+++++++|+.++|. .....||||++|
T Consensus 84 aGLG~Da~vlA~-~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~---~~~~s~DVVY~D 158 (234)
T PF04445_consen 84 AGLGRDAFVLAS-LGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR---QPDNSFDVVYFD 158 (234)
T ss_dssp -TTSHHHHHHHH-HT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC---CHSS--SEEEE-
T ss_pred CcchHHHHHHHc-cCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh---hcCCCCCEEEEC
Confidence 456666777766 576 5999999999999988766642 111000 0368999999999987 235689999999
Q ss_pred C-CC
Q 019408 78 S-FG 80 (341)
Q Consensus 78 P-yg 80 (341)
| |-
T Consensus 159 PMFp 162 (234)
T PF04445_consen 159 PMFP 162 (234)
T ss_dssp -S--
T ss_pred CCCC
Confidence 9 64
No 197
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=94.98 E-value=0.17 Score=47.47 Aligned_cols=133 Identities=17% Similarity=0.181 Sum_probs=71.4
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FGS 81 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-ygs 81 (341)
||=..+.+.+. ..++.+++|+.+...+.+++|+... .+++|.+.|.+..|..+.-..++=-+|.||| |-.
T Consensus 67 GSP~ia~~llR--~qDrl~l~ELHp~d~~~L~~~~~~~-------~~v~v~~~DG~~~l~allPP~~rRglVLIDPpYE~ 137 (245)
T PF04378_consen 67 GSPAIAARLLR--EQDRLVLFELHPQDFEALKKNFRRD-------RRVRVHHRDGYEGLKALLPPPERRGLVLIDPPYEQ 137 (245)
T ss_dssp -HHHHHHHHS---TTSEEEEE--SHHHHHHHTTS--TT-------S-EEEE-S-HHHHHHHH-S-TTS-EEEEE-----S
T ss_pred CCHHHHHHhCC--ccceEEEEecCchHHHHHHHHhccC-------CccEEEeCchhhhhhhhCCCCCCCeEEEECCCCCC
Confidence 34445555554 5689999999999999999998742 4788999999999988765555667999999 877
Q ss_pred CHHHHH------HH---------------------------HHhcccCCEEEEEecCCCCCCCCCchhHHhhhc--cccC
Q 019408 82 DSSFLR------TV---------------------------FNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYG--AYIL 126 (341)
Q Consensus 82 p~~fld------~a---------------------------l~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg--~~~~ 126 (341)
..+|-. .| ++.....-+|.++-+ =.-+....+-|| -.+.
T Consensus 138 ~~dy~~v~~~l~~a~kR~~~G~~~iWYPi~~~~~~~~~~~~l~~~~~~~~l~~El~------v~~~~~~~gm~GSGm~ii 211 (245)
T PF04378_consen 138 KDDYQRVVDALAKALKRWPTGVYAIWYPIKDRERVDRFLRALKALGIKKVLRAELR------VRPPDSPRGMNGSGMLII 211 (245)
T ss_dssp TTHHHHHHHHHHHHHHH-TTSEEEEEEEESSHHHHHHHHHHHHHH-SSE-EEEEEE---------SS---S--EEEEEEE
T ss_pred chHHHHHHHHHHHHHHhcCCcEEEEEeecccHHHHHHHHHHHHhcCCCCeEEEEEE------ecCCCCcCceecceEEEE
Confidence 766642 11 222222224444321 111222344454 4567
Q ss_pred CCCCchhhhHHHHHHHHHHHHHhc
Q 019408 127 PMPYSNEIGLRMLIGGAVREASAQ 150 (341)
Q Consensus 127 ~~~~~~E~~lR~ll~~i~~~Aa~~ 150 (341)
+-+|.=+..++.++..+.+.-+.-
T Consensus 212 NPPw~l~~~l~~~l~~L~~~L~~~ 235 (245)
T PF04378_consen 212 NPPWTLDEELEEILPWLAETLAQD 235 (245)
T ss_dssp S--TTHHHHHHHHHHHHHHHSSTT
T ss_pred cCCccHHHHHHHHHHHHHHHhCcC
Confidence 889998889999988888765443
No 198
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=94.90 E-value=0.13 Score=42.17 Aligned_cols=90 Identities=16% Similarity=0.198 Sum_probs=64.9
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
|.|...+.+|+-.| .+|++.|.|+.-.+.+++ .+.. .-+.....|..+.+.+... +..+|+| +|.-|++
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~----~Ga~----~~~~~~~~~~~~~i~~~~~-~~~~d~v-id~~g~~ 69 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKE----LGAD----HVIDYSDDDFVEQIRELTG-GRGVDVV-IDCVGSG 69 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHH----TTES----EEEETTTSSHHHHHHHHTT-TSSEEEE-EESSSSH
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHh----hccc----ccccccccccccccccccc-cccceEE-EEecCcH
Confidence 57999999999878 889999999999999876 4442 1122224456666666532 3568865 4555543
Q ss_pred HHHHHHHHHhcccCCEEEEEec
Q 019408 83 SSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~vt~T 104 (341)
+.++.++++++++|-+.+...
T Consensus 70 -~~~~~~~~~l~~~G~~v~vg~ 90 (130)
T PF00107_consen 70 -DTLQEAIKLLRPGGRIVVVGV 90 (130)
T ss_dssp -HHHHHHHHHEEEEEEEEEESS
T ss_pred -HHHHHHHHHhccCCEEEEEEc
Confidence 788999999999999997543
No 199
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=94.86 E-value=0.058 Score=49.25 Aligned_cols=130 Identities=19% Similarity=0.124 Sum_probs=79.0
Q ss_pred cHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC--C
Q 019408 5 GIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS--D 82 (341)
Q Consensus 5 G~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs--p 82 (341)
|..++..+...-+.+|+++|+++..++.+++|++..++. +++++..+|-+..+.. ++..|.|++==.|. -
T Consensus 9 gyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~----~~i~~rlgdGL~~l~~----~e~~d~ivIAGMGG~lI 80 (205)
T PF04816_consen 9 GYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLE----DRIEVRLGDGLEVLKP----GEDVDTIVIAGMGGELI 80 (205)
T ss_dssp THHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-T----TTEEEEE-SGGGG--G----GG---EEEEEEE-HHHH
T ss_pred hHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCc----ccEEEEECCcccccCC----CCCCCEEEEecCCHHHH
Confidence 677888887433688999999999999999999999985 6899999999887753 23369999887764 1
Q ss_pred HHHHHHHHHhcccCCEEEEEecCCCCCCCCCchhHHhhhccccCCCCCchhhhHHHHHHHHHHHHHhcCCcEEEEEeccc
Q 019408 83 SSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYS 162 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~~~~~~E~~lR~ll~~i~~~Aa~~~~~i~Pl~s~~~ 162 (341)
..+|+.....++...-|.+ |.. .+.-.+ .+...++|..|.==.-..
T Consensus 81 ~~ILe~~~~~~~~~~~lIL--------qP~------------------~~~~~L-------R~~L~~~gf~I~~E~lv~- 126 (205)
T PF04816_consen 81 IEILEAGPEKLSSAKRLIL--------QPN------------------THAYEL-------RRWLYENGFEIIDEDLVE- 126 (205)
T ss_dssp HHHHHHTGGGGTT--EEEE--------EES------------------S-HHHH-------HHHHHHTTEEEEEEEEEE-
T ss_pred HHHHHhhHHHhccCCeEEE--------eCC------------------CChHHH-------HHHHHHCCCEEEEeEEEe-
Confidence 2445555444444334554 221 122333 355566777765433333
Q ss_pred CCCCeEEEEEEEEe
Q 019408 163 YHGPVFRVMLRVHR 176 (341)
Q Consensus 163 ~~dhy~Rv~vrv~~ 176 (341)
..++|+-|.+-...
T Consensus 127 e~~~~YeIi~~~~~ 140 (205)
T PF04816_consen 127 ENGRFYEIIVAERG 140 (205)
T ss_dssp ETTEEEEEEEEEES
T ss_pred ECCEEEEEEEEEeC
Confidence 35777766555443
No 200
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=94.81 E-value=0.12 Score=49.81 Aligned_cols=70 Identities=19% Similarity=0.058 Sum_probs=55.5
Q ss_pred ccccHhHHHHhhhCC-CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC
Q 019408 2 CGCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS 78 (341)
Q Consensus 2 agsG~rgir~a~e~g-a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP 78 (341)
+|.|.-+..++...+ ..+|+++|+|++|++..+++++. . ++++++++|..++.......-..+|.|.+|.
T Consensus 28 lG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~-----~ri~~i~~~f~~l~~~l~~~~~~vDgIl~DL 98 (296)
T PRK00050 28 FGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--F-----GRFTLVHGNFSNLKEVLAEGLGKVDGILLDL 98 (296)
T ss_pred cCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--C-----CcEEEEeCCHHHHHHHHHcCCCccCEEEECC
Confidence 589999999987532 46899999999999999998754 2 4788999999998765433112699999998
No 201
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=94.79 E-value=0.21 Score=44.84 Aligned_cols=92 Identities=14% Similarity=0.096 Sum_probs=74.0
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
||-|.=||-.|--..-.+++.+|.+..=+..+++=++..+++ ++++++..+.+ ......||+|..=-+++
T Consensus 57 SGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~-----nv~v~~~R~E~-----~~~~~~fd~v~aRAv~~ 126 (184)
T PF02527_consen 57 SGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS-----NVEVINGRAEE-----PEYRESFDVVTARAVAP 126 (184)
T ss_dssp STTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S-----SEEEEES-HHH-----TTTTT-EEEEEEESSSS
T ss_pred CCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC-----CEEEEEeeecc-----cccCCCccEEEeehhcC
Confidence 577888888887544567999999999999999999988883 68999999987 22356899999988887
Q ss_pred CHHHHHHHHHhcccCCEEEEEe
Q 019408 82 DSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 82 p~~fld~al~~v~~gGlL~vt~ 103 (341)
...+++-+...+++||.+..-.
T Consensus 127 l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 127 LDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp HHHHHHHHGGGEEEEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEEc
Confidence 7788999999999999888643
No 202
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=94.78 E-value=0.16 Score=47.97 Aligned_cols=92 Identities=24% Similarity=0.195 Sum_probs=66.9
Q ss_pred ccccHhHHHHhhhCCC------CEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEE
Q 019408 2 CGCGIRSLRYLAEAKA------DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLID 75 (341)
Q Consensus 2 agsG~rgir~a~e~ga------~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvId 75 (341)
+|||=.++|++...+. .+|+..||||.-+...++-.+..++. ....+.++.+||.++- -....||...
T Consensus 109 GGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~--~~~~~~w~~~dAE~Lp----Fdd~s~D~yT 182 (296)
T KOG1540|consen 109 GGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLK--ASSRVEWVEGDAEDLP----FDDDSFDAYT 182 (296)
T ss_pred CCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCC--cCCceEEEeCCcccCC----CCCCcceeEE
Confidence 5899999999876555 78999999999999999988766663 1123778899998753 1234566543
Q ss_pred eCCCC-----CCHHHHHHHHHhcccCCEEE
Q 019408 76 IDSFG-----SDSSFLRTVFNAVKRDGLLY 100 (341)
Q Consensus 76 lDPyg-----sp~~fld~al~~v~~gGlL~ 100 (341)
+- || .+..-+..|.+.||+||.+.
T Consensus 183 ia-fGIRN~th~~k~l~EAYRVLKpGGrf~ 211 (296)
T KOG1540|consen 183 IA-FGIRNVTHIQKALREAYRVLKPGGRFS 211 (296)
T ss_pred Ee-cceecCCCHHHHHHHHHHhcCCCcEEE
Confidence 32 22 23356778899999999776
No 203
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=94.74 E-value=0.14 Score=49.62 Aligned_cols=87 Identities=13% Similarity=0.122 Sum_probs=58.6
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
.+.|..++.+|+..|+.+|++.|.+++..+++++ .+.+ ..+.....|..+++. . ...+|+| +|.-|.
T Consensus 179 G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~----lGa~----~vi~~~~~~~~~~~~---~-~g~~D~v-id~~G~ 245 (343)
T PRK09880 179 GPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE----MGAD----KLVNPQNDDLDHYKA---E-KGYFDVS-FEVSGH 245 (343)
T ss_pred CHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH----cCCc----EEecCCcccHHHHhc---c-CCCCCEE-EECCCC
Confidence 3567777888888899899999999998888765 4442 111111223333222 1 2258976 588786
Q ss_pred CHHHHHHHHHhcccCCEEEEE
Q 019408 82 DSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 82 p~~fld~al~~v~~gGlL~vt 102 (341)
+ ..++.+++++++||.+.+.
T Consensus 246 ~-~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 246 P-SSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred H-HHHHHHHHHhhcCCEEEEE
Confidence 4 4678899999999998864
No 204
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=94.73 E-value=0.084 Score=44.21 Aligned_cols=50 Identities=18% Similarity=0.080 Sum_probs=41.0
Q ss_pred ccccHhHHHHhhhCCC-CEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccH
Q 019408 2 CGCGIRSLRYLAEAKA-DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDA 57 (341)
Q Consensus 2 agsG~rgir~a~e~ga-~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA 57 (341)
|+.|..++.++. .+. .+|+++|.++..++.+++|++.|++. ++++++..+
T Consensus 7 a~~G~~~~~~~~-~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~-----~v~~~~~al 57 (143)
T TIGR01444 7 ANIGDTSLYFAR-KGAEGRVIAFEPLPDAYEILEENVKLNNLP-----NVVLLNAAV 57 (143)
T ss_pred CCccHHHHHHHH-hCCCCEEEEEecCHHHHHHHHHHHHHcCCC-----cEEEEEeee
Confidence 689999999987 454 38999999999999999999999873 466666544
No 205
>PHA01634 hypothetical protein
Probab=94.66 E-value=0.08 Score=44.95 Aligned_cols=67 Identities=21% Similarity=0.225 Sum_probs=51.2
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
|+.|-.+|-++. +||++|++.+.++.-.+.+++|++.|++- ++.. ...+=+ ..=..||+-.+|-=|.
T Consensus 37 A~iGdSaiYF~l-~GAK~Vva~E~~~kl~k~~een~k~nnI~----DK~v-~~~eW~-------~~Y~~~Di~~iDCeGC 103 (156)
T PHA01634 37 ADCGSSALYFLL-RGASFVVQYEKEEKLRKKWEEVCAYFNIC----DKAV-MKGEWN-------GEYEDVDIFVMDCEGC 103 (156)
T ss_pred CCccchhhHHhh-cCccEEEEeccCHHHHHHHHHHhhhheee----ecee-eccccc-------ccCCCcceEEEEccch
Confidence 567889999999 79999999999999999999999999874 3432 222211 1124689988888663
No 206
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=94.48 E-value=0.11 Score=45.14 Aligned_cols=78 Identities=13% Similarity=0.022 Sum_probs=54.5
Q ss_pred EEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC----CCCCHHHHHHHHHhcccC
Q 019408 21 MANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS----FGSDSSFLRTVFNAVKRD 96 (341)
Q Consensus 21 ~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP----ygsp~~fld~al~~v~~g 96 (341)
+.+|+|++.++..+++.+..+.. ...+++++++|+.++- ...+.||+|.+-= ...+..++....+.|++|
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~--~~~~i~~~~~d~~~lp----~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpG 74 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARS--CYKCIEWIEGDAIDLP----FDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPG 74 (160)
T ss_pred CeEcCCHHHHHHHHHhhhccccc--CCCceEEEEechhhCC----CCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcC
Confidence 36899999999998876532210 0135788999998752 2345799997642 122456677888999999
Q ss_pred CEEEEEec
Q 019408 97 GLLYLTST 104 (341)
Q Consensus 97 GlL~vt~T 104 (341)
|.|++...
T Consensus 75 G~l~i~d~ 82 (160)
T PLN02232 75 SRVSILDF 82 (160)
T ss_pred eEEEEEEC
Confidence 99997543
No 207
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=94.35 E-value=0.072 Score=44.84 Aligned_cols=52 Identities=19% Similarity=0.220 Sum_probs=37.4
Q ss_pred cEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC-------HHHHHHHHHhcccCCEEEEEec
Q 019408 49 RWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD-------SSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 49 ~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp-------~~fld~al~~v~~gGlL~vt~T 104 (341)
..++..+||.+.|..+. .+||+|++|+|... .+++....+++++||.|.. .|
T Consensus 32 ~L~L~~gDa~~~l~~l~---~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~T-ys 90 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQLD---ARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLAT-YS 90 (124)
T ss_dssp EEEEEES-HHHHHHHB----T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEE-S-
T ss_pred EEEEEEcHHHHHHHhCc---ccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEE-ee
Confidence 45688999999998763 58999999999741 3678888889999999884 54
No 208
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=94.23 E-value=0.15 Score=47.85 Aligned_cols=98 Identities=15% Similarity=0.169 Sum_probs=67.2
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcC-----CC---------------------------CCCC--
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIE-----RG---------------------------SGDE-- 47 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~-----~~---------------------------~~~~-- 47 (341)
|-+|.+++-.|+.-|+..|..+||++.-++.+++|++.-. +. .++.
T Consensus 67 CNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~t~~~p~n~~ 146 (288)
T KOG2899|consen 67 CNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAFTTDFPDNVW 146 (288)
T ss_pred CCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccccccCCcchh
Confidence 5689999999998899999999999999999999998421 00 0000
Q ss_pred ccEEEEeccHHHHHHHhhhcCCcccEEEeCCC--------CC--CHHHHHHHHHhcccCCEEEEE
Q 019408 48 KRWVVTHFDANRVLSECYLKREFFDLIDIDSF--------GS--DSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 48 ~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPy--------gs--p~~fld~al~~v~~gGlL~vt 102 (341)
..-+=+..+..++|. . ...+||+|..=.- |. -..|+..+-+++.+||+|.|+
T Consensus 147 f~~~n~vle~~dfl~-~--~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 147 FQKENYVLESDDFLD-M--IQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred cccccEEEecchhhh-h--ccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 000112345555562 2 3458999865431 11 246777888999999999994
No 209
>PRK13699 putative methylase; Provisional
Probab=94.12 E-value=0.13 Score=47.64 Aligned_cols=49 Identities=14% Similarity=0.180 Sum_probs=37.9
Q ss_pred EEEeccHHHHHHHhhhcCCcccEEEeCC-CCC--------C----------HHHHHHHHHhcccCCEEEE
Q 019408 51 VVTHFDANRVLSECYLKREFFDLIDIDS-FGS--------D----------SSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 51 ~v~~~DA~~~l~~~~~~~~~fDvIdlDP-ygs--------p----------~~fld~al~~v~~gGlL~v 101 (341)
+++++|+.++|+.+ ..+.+|+|+.|| |+. . ..++..+.+.|++||.+++
T Consensus 3 ~l~~gD~le~l~~l--pd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 3 RFILGNCIDVMARF--PDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred eEEechHHHHHHhC--CccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 57899999999876 356899999999 852 0 1334566789999999986
No 210
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=93.99 E-value=0.51 Score=48.85 Aligned_cols=99 Identities=12% Similarity=0.101 Sum_probs=73.2
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEE---EeCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLI---DIDS 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvI---dlDP 78 (341)
+|.|-+-+++|...--.-++.+|++...+..+.+-++..++. ++.+++.|+..++... ....+|-| +-||
T Consensus 356 ~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~-----N~~~~~~~~~~~~~~~--~~~sv~~i~i~FPDP 428 (506)
T PRK01544 356 FGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNIT-----NFLLFPNNLDLILNDL--PNNSLDGIYILFPDP 428 (506)
T ss_pred CCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCC-----eEEEEcCCHHHHHHhc--CcccccEEEEECCCC
Confidence 689999999998522235889999988888777777767773 6778888987666543 23456755 5689
Q ss_pred C-CC--------CHHHHHHHHHhcccCCEEEEEecCCCC
Q 019408 79 F-GS--------DSSFLRTVFNAVKRDGLLYLTSTDGYS 108 (341)
Q Consensus 79 y-gs--------p~~fld~al~~v~~gGlL~vt~TD~~~ 108 (341)
. .. ...|++.-.+.|++||.|.+ +||-..
T Consensus 429 WpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~-~TD~~~ 466 (506)
T PRK01544 429 WIKNKQKKKRIFNKERLKILQDKLKDNGNLVF-ASDIEN 466 (506)
T ss_pred CCCCCCccccccCHHHHHHHHHhcCCCCEEEE-EcCCHH
Confidence 4 21 24889988999999999997 888644
No 211
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=93.99 E-value=0.32 Score=47.80 Aligned_cols=84 Identities=19% Similarity=0.204 Sum_probs=58.2
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEe-ccHHHHHHHhhhcCCcccEEEeCCC
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTH-FDANRVLSECYLKREFFDLIDIDSF 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~-~DA~~~l~~~~~~~~~fDvIdlDPy 79 (341)
+.|.|.++|.+|+..| .+|+++|+|++-.+.+++ .+.+ .+.... .|....+.+ .||+|+.==
T Consensus 175 ~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~----lGAd-----~~i~~~~~~~~~~~~~------~~d~ii~tv- 237 (339)
T COG1064 175 AGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKK----LGAD-----HVINSSDSDALEAVKE------IADAIIDTV- 237 (339)
T ss_pred CcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHH----hCCc-----EEEEcCCchhhHHhHh------hCcEEEECC-
Confidence 4688999999999778 679999999999998877 5542 221112 333333322 399664332
Q ss_pred CCCHHHHHHHHHhcccCCEEEEEe
Q 019408 80 GSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 gsp~~fld~al~~v~~gGlL~vt~ 103 (341)
+..-++.++++|+.||-+.+..
T Consensus 238 --~~~~~~~~l~~l~~~G~~v~vG 259 (339)
T COG1064 238 --GPATLEPSLKALRRGGTLVLVG 259 (339)
T ss_pred --ChhhHHHHHHHHhcCCEEEEEC
Confidence 1266788999999999999743
No 212
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=93.80 E-value=0.18 Score=43.32 Aligned_cols=79 Identities=15% Similarity=0.105 Sum_probs=52.4
Q ss_pred EEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C---CC------C---HHH
Q 019408 19 FVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F---GS------D---SSF 85 (341)
Q Consensus 19 ~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y---gs------p---~~f 85 (341)
+|++.||-++|++..++.++..++. +++++++.+=.. |.+... ..+.|.|...= | |. | ..-
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~----~~v~li~~sHe~-l~~~i~-~~~v~~~iFNLGYLPggDk~i~T~~~TTl~A 74 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLE----DRVTLILDSHEN-LDEYIP-EGPVDAAIFNLGYLPGGDKSITTKPETTLKA 74 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-G----SGEEEEES-GGG-GGGT---S--EEEEEEEESB-CTS-TTSB--HHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCC----CcEEEEECCHHH-HHhhCc-cCCcCEEEEECCcCCCCCCCCCcCcHHHHHH
Confidence 6999999999999999999988874 467766544332 322221 13678777653 2 21 1 245
Q ss_pred HHHHHHhcccCCEEEEEe
Q 019408 86 LRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 86 ld~al~~v~~gGlL~vt~ 103 (341)
++.|++.|++||+|.+++
T Consensus 75 l~~al~lL~~gG~i~iv~ 92 (140)
T PF06962_consen 75 LEAALELLKPGGIITIVV 92 (140)
T ss_dssp HHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHhhccCCEEEEEE
Confidence 789999999999999865
No 213
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=93.69 E-value=0.21 Score=46.59 Aligned_cols=75 Identities=17% Similarity=0.085 Sum_probs=56.6
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCccc---EEEeCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFD---LIDIDS 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fD---vIdlDP 78 (341)
+|+|..+...+. .+ ..|+++|+|+..++.+++|+.. . .+++++++|+..+-.. .|| +|+-.+
T Consensus 38 ~G~G~lt~~L~~-~~-~~v~~iE~d~~~~~~l~~~~~~--~-----~~v~v~~~D~~~~~~~------~~d~~~~vvsNl 102 (253)
T TIGR00755 38 PGLGALTEPLLK-RA-KKVTAIEIDPRLAEILRKLLSL--Y-----ERLEVIEGDALKVDLP------DFPKQLKVVSNL 102 (253)
T ss_pred CCCCHHHHHHHH-hC-CcEEEEECCHHHHHHHHHHhCc--C-----CcEEEEECchhcCChh------HcCCcceEEEcC
Confidence 799999998887 45 4699999999999999988753 1 3678899999764321 355 888887
Q ss_pred -CCCCHHHHHHHHH
Q 019408 79 -FGSDSSFLRTVFN 91 (341)
Q Consensus 79 -ygsp~~fld~al~ 91 (341)
|.-+.+.+...+.
T Consensus 103 Py~i~~~il~~ll~ 116 (253)
T TIGR00755 103 PYNISSPLIFKLLE 116 (253)
T ss_pred ChhhHHHHHHHHhc
Confidence 7666677766554
No 214
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=93.65 E-value=1.9 Score=39.67 Aligned_cols=136 Identities=14% Similarity=0.120 Sum_probs=107.6
Q ss_pred ccccHhHHHHhhh-CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCc-ccEEEeCCC
Q 019408 2 CGCGIRSLRYLAE-AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREF-FDLIDIDSF 79 (341)
Q Consensus 2 agsG~rgir~a~e-~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~-fDvIdlDPy 79 (341)
||.|.=||-.|.- +... |+.+|.+..=+.-+++=.+..++ ++++++++-|.++-.+ .+ ||+|-.=-+
T Consensus 76 SGaGfPGipLAI~~p~~~-vtLles~~Kk~~FL~~~~~eL~L-----~nv~i~~~RaE~~~~~-----~~~~D~vtsRAv 144 (215)
T COG0357 76 SGAGFPGIPLAIAFPDLK-VTLLESLGKKIAFLREVKKELGL-----ENVEIVHGRAEEFGQE-----KKQYDVVTSRAV 144 (215)
T ss_pred CCCCCchhhHHHhccCCc-EEEEccCchHHHHHHHHHHHhCC-----CCeEEehhhHhhcccc-----cccCcEEEeehc
Confidence 6888889998753 4444 99999999999999998888888 3689999999876432 13 999999888
Q ss_pred CCCHHHHHHHHHhcccCCEEEEEecCCCCCCCCCchhHHhhhccccCCCCCchhhhHHHHHHHHHHHHHhcCCcEEEEEe
Q 019408 80 GSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFS 159 (341)
Q Consensus 80 gsp~~fld~al~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~~~~~~E~~lR~ll~~i~~~Aa~~~~~i~Pl~s 159 (341)
++-..+.+-++..++.||.+.+-- + ...+.-+..+.++....+-.++-+.+
T Consensus 145 a~L~~l~e~~~pllk~~g~~~~~k-------~----------------------~~~~~e~~e~~~a~~~~~~~~~~~~~ 195 (215)
T COG0357 145 ASLNVLLELCLPLLKVGGGFLAYK-------G----------------------LAGKDELPEAEKAILPLGGQVEKVFS 195 (215)
T ss_pred cchHHHHHHHHHhcccCCcchhhh-------H----------------------HhhhhhHHHHHHHHHhhcCcEEEEEE
Confidence 888888999999999988765311 1 34455677788888899999999999
Q ss_pred cccCCCCeEEEEEEEEeC
Q 019408 160 YYSYHGPVFRVMLRVHRK 177 (341)
Q Consensus 160 ~~~~~dhy~Rv~vrv~~~ 177 (341)
+.-|....-|..+-+.+.
T Consensus 196 ~~~p~~~~~r~l~ii~~~ 213 (215)
T COG0357 196 LTVPELDGERHLVIIRKR 213 (215)
T ss_pred eecCCCCCceEEEEEecc
Confidence 998888888887777654
No 215
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=93.58 E-value=0.26 Score=45.42 Aligned_cols=102 Identities=15% Similarity=0.181 Sum_probs=54.2
Q ss_pred CccccHh-HHHHhhh-CCCCEEEEeeCCHHHHHHHHHHHHHcCCC-----------------------------------
Q 019408 1 MCGCGIR-SLRYLAE-AKADFVMANDGNDAHRRVILGNLKSIERG----------------------------------- 43 (341)
Q Consensus 1 fagsG~r-gir~a~e-~ga~~V~~~Dis~~A~~~i~~N~~~n~~~----------------------------------- 43 (341)
+||+|.+ .+--+.. .-...|++-|||++++++.++|+.++..+
T Consensus 59 CCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~sA~RL~~~l 138 (246)
T PF11599_consen 59 CCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALESADRLRERL 138 (246)
T ss_dssp T-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence 4677643 2222332 23578999999999999999999753110
Q ss_pred --CCCCccEEEEeccHHHHH--HHhhhcCCcccEEEeC-CCCCC------------HHHHHHHHHhcccCCEEEEEe
Q 019408 44 --SGDEKRWVVTHFDANRVL--SECYLKREFFDLIDID-SFGSD------------SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 44 --~~~~~~~~v~~~DA~~~l--~~~~~~~~~fDvIdlD-Pygsp------------~~fld~al~~v~~gGlL~vt~ 103 (341)
.|......+.+.|.++.- ..+ ..+...|+|+-| |||.- ..++++.-..+-.+++++|+.
T Consensus 139 ~~~g~~~p~~~~~aDvf~~~~~~~~-~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sVV~v~~ 214 (246)
T PF11599_consen 139 AAEGGDEPHAIFRADVFDPSPLAVL-DAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSVVAVSD 214 (246)
T ss_dssp HHTTSS--EEEEE--TT-HHHHHHH-HTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-EEEEEE
T ss_pred HhcCCCCchhheeecccCCchhhhh-ccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcEEEEec
Confidence 111122445666666532 222 123346999999 79852 135566666777888888833
No 216
>PRK06202 hypothetical protein; Provisional
Probab=93.36 E-value=0.17 Score=46.43 Aligned_cols=86 Identities=15% Similarity=0.146 Sum_probs=52.7
Q ss_pred ccccHhHHHHhh---hCCC-CEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeC
Q 019408 2 CGCGIRSLRYLA---EAKA-DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDID 77 (341)
Q Consensus 2 agsG~rgir~a~---e~ga-~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlD 77 (341)
||+|..+...+. +.|. .+|+++|+|+++++..+++...+++ ++...|+..+-. ....||+|..-
T Consensus 69 cG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~--------~~~~~~~~~l~~----~~~~fD~V~~~ 136 (232)
T PRK06202 69 CGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGV--------TFRQAVSDELVA----EGERFDVVTSN 136 (232)
T ss_pred cCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCC--------eEEEEecccccc----cCCCccEEEEC
Confidence 799998877654 2343 4799999999999999998765443 233344333211 24589999876
Q ss_pred C-C--CCC---HHHHHHHHHhcccCCEEEE
Q 019408 78 S-F--GSD---SSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 78 P-y--gsp---~~fld~al~~v~~gGlL~v 101 (341)
- + -.. ..++..+.+.++ |.+.+
T Consensus 137 ~~lhh~~d~~~~~~l~~~~r~~~--~~~~i 164 (232)
T PRK06202 137 HFLHHLDDAEVVRLLADSAALAR--RLVLH 164 (232)
T ss_pred CeeecCChHHHHHHHHHHHHhcC--eeEEE
Confidence 4 2 111 135555555555 44444
No 217
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=93.28 E-value=0.045 Score=50.42 Aligned_cols=97 Identities=20% Similarity=0.095 Sum_probs=59.1
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHH-HHHHHHcCCCCC------CCccEEEEeccHHHHHHHhhhcCCcccE
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVI-LGNLKSIERGSG------DEKRWVVTHFDANRVLSECYLKREFFDL 73 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i-~~N~~~n~~~~~------~~~~~~v~~~DA~~~l~~~~~~~~~fDv 73 (341)
+||.|.=.+-.|. .|- +|+.+|+|+.|++.. ++|-....+... ...+++++++|.+.+=... ..+||+
T Consensus 45 gCG~g~D~~~La~-~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~---~g~fD~ 119 (218)
T PF05724_consen 45 GCGKGYDMLWLAE-QGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED---VGKFDL 119 (218)
T ss_dssp TTTTSCHHHHHHH-TTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC---HHSEEE
T ss_pred CCCChHHHHHHHH-CCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh---cCCceE
Confidence 4777777666665 675 799999999999998 333321111100 0135789999999753221 136998
Q ss_pred EE-------eCCCCCCHHHHHHHHHhcccCCE-EEEEe
Q 019408 74 ID-------IDSFGSDSSFLRTVFNAVKRDGL-LYLTS 103 (341)
Q Consensus 74 Id-------lDPygsp~~fld~al~~v~~gGl-L~vt~ 103 (341)
|+ |+| ..=..|.+...++|++||. |.+|-
T Consensus 120 iyDr~~l~Alpp-~~R~~Ya~~l~~ll~p~g~~lLi~l 156 (218)
T PF05724_consen 120 IYDRTFLCALPP-EMRERYAQQLASLLKPGGRGLLITL 156 (218)
T ss_dssp EEECSSTTTS-G-GGHHHHHHHHHHCEEEEEEEEEEEE
T ss_pred EEEecccccCCH-HHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 74 333 0013678888899999999 34443
No 218
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=93.23 E-value=0.54 Score=45.71 Aligned_cols=90 Identities=18% Similarity=0.096 Sum_probs=59.6
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
+.|...+.+|+..|+.+|+++|.+++-.+.+++ .+.+ .-+.....|..+.+.+. ..+..+|+|+ |--|.+
T Consensus 187 ~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~----~Ga~----~~i~~~~~~~~~~i~~~-~~~~g~d~vi-d~~g~~ 256 (358)
T TIGR03451 187 GVGDAAIAGAALAGASKIIAVDIDDRKLEWARE----FGAT----HTVNSSGTDPVEAIRAL-TGGFGADVVI-DAVGRP 256 (358)
T ss_pred HHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc----eEEcCCCcCHHHHHHHH-hCCCCCCEEE-ECCCCH
Confidence 456677888888899889999999998888754 4431 11111223444444333 2234589664 877754
Q ss_pred HHHHHHHHHhcccCCEEEEEe
Q 019408 83 SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~vt~ 103 (341)
..++.+++++++||.+++..
T Consensus 257 -~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 257 -ETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred -HHHHHHHHHhccCCEEEEEC
Confidence 46778999999999998744
No 219
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=93.02 E-value=0.85 Score=43.92 Aligned_cols=96 Identities=18% Similarity=0.095 Sum_probs=66.6
Q ss_pred ccccHhHHHHhhhC--CCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-
Q 019408 2 CGCGIRSLRYLAEA--KADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS- 78 (341)
Q Consensus 2 agsG~rgir~a~e~--ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP- 78 (341)
||.|--=+.++.+. ...+|..+|.|+..++.-++=++.+|++ +.+++.++||++.-.-... .-+.|++++==
T Consensus 144 aG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~----~i~~f~~~dAfd~~~l~~l-~p~P~l~iVsGL 218 (311)
T PF12147_consen 144 AGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLE----DIARFEQGDAFDRDSLAAL-DPAPTLAIVSGL 218 (311)
T ss_pred cCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCc----cceEEEecCCCCHhHhhcc-CCCCCEEEEecc
Confidence 56665555565542 2589999999999999999999999995 5568999999986322211 23568776644
Q ss_pred ---CCCCHHHHHH----HHHhcccCCEEEEEe
Q 019408 79 ---FGSDSSFLRT----VFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 ---ygsp~~fld~----al~~v~~gGlL~vt~ 103 (341)
|... ..+.. .-.++.+||+|+.|.
T Consensus 219 ~ElF~Dn-~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 219 YELFPDN-DLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred hhhCCcH-HHHHHHHHHHHHHhCCCcEEEEcC
Confidence 4432 33333 335799999999754
No 220
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=92.97 E-value=0.36 Score=46.08 Aligned_cols=93 Identities=14% Similarity=0.108 Sum_probs=56.4
Q ss_pred cccHh---HHHHhhhCCC-CEEEEeeCCHHHHHHHHHHHH-HcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeC
Q 019408 3 GCGIR---SLRYLAEAKA-DFVMANDGNDAHRRVILGNLK-SIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDID 77 (341)
Q Consensus 3 gsG~r---gir~a~e~ga-~~V~~~Dis~~A~~~i~~N~~-~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlD 77 (341)
|||-+ +|..+++.+. ..|+.+|+|++|+++.++=++ ..++. .+++++.+|+......+ ..||+|++-
T Consensus 128 GSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~----~~m~f~~~d~~~~~~dl----~~~DvV~lA 199 (276)
T PF03059_consen 128 GSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLS----KRMSFITADVLDVTYDL----KEYDVVFLA 199 (276)
T ss_dssp ---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-----SSEEEEES-GGGG-GG--------SEEEE-
T ss_pred cCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccccc----CCeEEEecchhcccccc----ccCCEEEEh
Confidence 66743 5666765443 468899999999999988666 44553 56888999987654332 379999999
Q ss_pred CCCC----C-HHHHHHHHHhcccCCEEEEEe
Q 019408 78 SFGS----D-SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 78 Pygs----p-~~fld~al~~v~~gGlL~vt~ 103 (341)
-... + ...++...+.+++|..|.+-+
T Consensus 200 alVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 200 ALVGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp TT-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred hhcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 8432 2 355677778899999999854
No 221
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=92.86 E-value=0.43 Score=45.47 Aligned_cols=90 Identities=17% Similarity=0.126 Sum_probs=64.7
Q ss_pred ccccHhHHHHhhhCC-CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 2 CGCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 2 agsG~rgir~a~e~g-a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
+|||.+|.-+++--+ -.+++..|.+..-.+...+-++.-++. +.+++++.|+...=... +..++|.|+||=
T Consensus 114 TGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~----~~vt~~hrDVc~~GF~~--ks~~aDaVFLDl-- 185 (314)
T KOG2915|consen 114 TGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIG----DNVTVTHRDVCGSGFLI--KSLKADAVFLDL-- 185 (314)
T ss_pred CCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCC----cceEEEEeecccCCccc--cccccceEEEcC--
Confidence 478888887776422 368999999998888888888888884 67889999987542211 134799999997
Q ss_pred CCHHH--HHHHHHhcccCC-EEE
Q 019408 81 SDSSF--LRTVFNAVKRDG-LLY 100 (341)
Q Consensus 81 sp~~f--ld~al~~v~~gG-lL~ 100 (341)
|+|. +..|.+.++.+| .||
T Consensus 186 -PaPw~AiPha~~~lk~~g~r~c 207 (314)
T KOG2915|consen 186 -PAPWEAIPHAAKILKDEGGRLC 207 (314)
T ss_pred -CChhhhhhhhHHHhhhcCceEE
Confidence 4454 445566777666 554
No 222
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=92.06 E-value=0.28 Score=45.51 Aligned_cols=96 Identities=11% Similarity=0.162 Sum_probs=57.7
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHH-------cCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEE
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKS-------IERGSGDEKRWVVTHFDANRVLSECYLKREFFDLI 74 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~-------n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvI 74 (341)
||.|.=.+-.|. .|.+ |+++|+|+.|++...+...+ +.........+++.++|.+++=.. .....+||.|
T Consensus 52 CGkg~D~~~LA~-~G~~-V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~-~~~~~~fD~V 128 (226)
T PRK13256 52 CGCSIDMLFFLS-KGVK-VIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKI-ANNLPVFDIW 128 (226)
T ss_pred CCChHHHHHHHh-CCCc-EEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcc-ccccCCcCee
Confidence 566665555555 6875 99999999999987552110 000000123678999999985210 0112368986
Q ss_pred E-------eCCCCCCHHHHHHHHHhcccCCEEEE
Q 019408 75 D-------IDSFGSDSSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 75 d-------lDPygsp~~fld~al~~v~~gGlL~v 101 (341)
+ |+| ..-..|+....++|++||.+.+
T Consensus 129 yDra~~~Alpp-~~R~~Y~~~l~~lL~pgg~lll 161 (226)
T PRK13256 129 YDRGAYIALPN-DLRTNYAKMMLEVCSNNTQILL 161 (226)
T ss_pred eeehhHhcCCH-HHHHHHHHHHHHHhCCCcEEEE
Confidence 3 333 0012567777888999887764
No 223
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=92.01 E-value=1.2 Score=43.12 Aligned_cols=91 Identities=18% Similarity=0.118 Sum_probs=57.6
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC--C
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--F 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--y 79 (341)
||+|..+.|++. +||+.|+.+|-++..+-.-+-=-+..+.. ..+.... ....-|. . ...||+|+.== |
T Consensus 124 C~nGY~~frM~~-~GA~~ViGiDP~~lf~~QF~~i~~~lg~~----~~~~~lp-lgvE~Lp---~-~~~FDtVF~MGVLY 193 (315)
T PF08003_consen 124 CNNGYYSFRMLG-RGAKSVIGIDPSPLFYLQFEAIKHFLGQD----PPVFELP-LGVEDLP---N-LGAFDTVFSMGVLY 193 (315)
T ss_pred CCCcHHHHHHhh-cCCCEEEEECCChHHHHHHHHHHHHhCCC----ccEEEcC-cchhhcc---c-cCCcCEEEEeeehh
Confidence 689999999998 69999999999877654422211222221 1222221 1222222 2 35799997543 4
Q ss_pred C--CCHHHHHHHHHhcccCCEEEEE
Q 019408 80 G--SDSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 80 g--sp~~fld~al~~v~~gGlL~vt 102 (341)
. +|...|...-+.|++||.|.+.
T Consensus 194 Hrr~Pl~~L~~Lk~~L~~gGeLvLE 218 (315)
T PF08003_consen 194 HRRSPLDHLKQLKDSLRPGGELVLE 218 (315)
T ss_pred ccCCHHHHHHHHHHhhCCCCEEEEE
Confidence 3 4556677777889999999974
No 224
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=91.87 E-value=0.52 Score=41.97 Aligned_cols=77 Identities=14% Similarity=0.086 Sum_probs=49.6
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C-
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F- 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y- 79 (341)
||+|..+...+.. ....++++|+|+++++.+++ .++ ++++.|+...+.. ...+.||+|+.-. +
T Consensus 22 cG~G~~~~~l~~~-~~~~~~giD~s~~~i~~a~~----~~~--------~~~~~d~~~~l~~--~~~~sfD~Vi~~~~l~ 86 (194)
T TIGR02081 22 CGDGELLALLRDE-KQVRGYGIEIDQDGVLACVA----RGV--------NVIQGDLDEGLEA--FPDKSFDYVILSQTLQ 86 (194)
T ss_pred CCCCHHHHHHHhc-cCCcEEEEeCCHHHHHHHHH----cCC--------eEEEEEhhhcccc--cCCCCcCEEEEhhHhH
Confidence 7999998777653 33457999999998887654 222 4567887653321 1235799998765 2
Q ss_pred --CCCHHHHHHHHHhc
Q 019408 80 --GSDSSFLRTVFNAV 93 (341)
Q Consensus 80 --gsp~~fld~al~~v 93 (341)
..+..++....+.+
T Consensus 87 ~~~d~~~~l~e~~r~~ 102 (194)
T TIGR02081 87 ATRNPEEILDEMLRVG 102 (194)
T ss_pred cCcCHHHHHHHHHHhC
Confidence 23445566655543
No 225
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=91.84 E-value=0.69 Score=41.17 Aligned_cols=89 Identities=15% Similarity=0.086 Sum_probs=65.6
Q ss_pred ccccHhHHHHhhhCCC--CEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHh-hhcCCcccEEEeC-
Q 019408 2 CGCGIRSLRYLAEAKA--DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSEC-YLKREFFDLIDID- 77 (341)
Q Consensus 2 agsG~rgir~a~e~ga--~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~-~~~~~~fDvIdlD- 77 (341)
.|||++-=+.++ +|. +.+++++.|++-+..+.+-.. .+.++++||+.+=..+ ..++..||.|+--
T Consensus 57 PGTGV~TkaIL~-~gv~~~~L~~iE~~~dF~~~L~~~~p----------~~~ii~gda~~l~~~l~e~~gq~~D~viS~l 125 (194)
T COG3963 57 PGTGVITKAILS-RGVRPESLTAIEYSPDFVCHLNQLYP----------GVNIINGDAFDLRTTLGEHKGQFFDSVISGL 125 (194)
T ss_pred CCccHhHHHHHh-cCCCccceEEEEeCHHHHHHHHHhCC----------CccccccchhhHHHHHhhcCCCeeeeEEecc
Confidence 489999888877 675 679999999999998876322 2357899999875222 2356789988765
Q ss_pred CCCC-----CHHHHHHHHHhcccCCEEEE
Q 019408 78 SFGS-----DSSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 78 Pygs-----p~~fld~al~~v~~gGlL~v 101 (341)
|+-+ ....+++++..+..||-|..
T Consensus 126 Pll~~P~~~~iaile~~~~rl~~gg~lvq 154 (194)
T COG3963 126 PLLNFPMHRRIAILESLLYRLPAGGPLVQ 154 (194)
T ss_pred ccccCcHHHHHHHHHHHHHhcCCCCeEEE
Confidence 4332 23668899999999998883
No 226
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=91.84 E-value=0.96 Score=43.57 Aligned_cols=88 Identities=15% Similarity=0.158 Sum_probs=58.1
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
+.|...+.+|+..|+..|++.|.+++-.+.+++ .+.. .-+.....+... +.+. ..+..+|.+++|.-|.+
T Consensus 171 ~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~Ga~----~~i~~~~~~~~~-~~~~-~~~~~~d~~v~d~~G~~ 240 (347)
T PRK10309 171 TIGLLAIQCAVALGAKSVTAIDINSEKLALAKS----LGAM----QTFNSREMSAPQ-IQSV-LRELRFDQLILETAGVP 240 (347)
T ss_pred HHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCc----eEecCcccCHHH-HHHH-hcCCCCCeEEEECCCCH
Confidence 456677888887898888999999988887643 3431 111111122222 2222 22346887889997753
Q ss_pred HHHHHHHHHhcccCCEEEE
Q 019408 83 SSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~v 101 (341)
..++.+++++++||.+.+
T Consensus 241 -~~~~~~~~~l~~~G~iv~ 258 (347)
T PRK10309 241 -QTVELAIEIAGPRAQLAL 258 (347)
T ss_pred -HHHHHHHHHhhcCCEEEE
Confidence 578889999999999886
No 227
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=91.75 E-value=0.24 Score=48.25 Aligned_cols=103 Identities=18% Similarity=0.114 Sum_probs=67.0
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHH--cCCCCCCCccEEEEeccHHHHHH-Hhhh-cCCcccEEEeC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKS--IERGSGDEKRWVVTHFDANRVLS-ECYL-KREFFDLIDID 77 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~--n~~~~~~~~~~~v~~~DA~~~l~-~~~~-~~~~fDvIdlD 77 (341)
||-|.=-|.|-+ +|+.+.+.+||...+++.+++-.+. +... -..-.+.++.+|++.... .... ...+||+|=.-
T Consensus 126 CGKGGDLlKw~k-AgI~~~igiDIAevSI~qa~~RYrdm~~r~~-~~~f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQ 203 (389)
T KOG1975|consen 126 CGKGGDLLKWDK-AGIGEYIGIDIAEVSINQARKRYRDMKNRFK-KFIFTAVFIAADCFKERLMDLLEFKDPRFDIVSCQ 203 (389)
T ss_pred cCCcccHhHhhh-hcccceEeeehhhccHHHHHHHHHHHHhhhh-cccceeEEEEeccchhHHHHhccCCCCCcceeeee
Confidence 466666788887 7999999999999999998876652 1110 000135788999886533 3221 23349988443
Q ss_pred C-----CCC---CHHHHHHHHHhcccCCEEEEEecCC
Q 019408 78 S-----FGS---DSSFLRTVFNAVKRDGLLYLTSTDG 106 (341)
Q Consensus 78 P-----ygs---p~~fld~al~~v~~gGlL~vt~TD~ 106 (341)
= |-+ +.-++..+.++|++||+.+-|-.|.
T Consensus 204 F~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPds 240 (389)
T KOG1975|consen 204 FAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDS 240 (389)
T ss_pred eeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcH
Confidence 2 332 2334556678899999999766544
No 228
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=91.67 E-value=1.3 Score=42.81 Aligned_cols=84 Identities=17% Similarity=0.188 Sum_probs=63.8
Q ss_pred CCCEEEEeeCCHHHHHHHHHHHHH--cCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeC---CCCCC-----HHH
Q 019408 16 KADFVMANDGNDAHRRVILGNLKS--IERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDID---SFGSD-----SSF 85 (341)
Q Consensus 16 ga~~V~~~Dis~~A~~~i~~N~~~--n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlD---Pygsp-----~~f 85 (341)
-+..++.+|++...+++-++=+.. ++.+ +.++.+.-+|.+.+|+... .+.||||++| |-|.+ .+|
T Consensus 144 ~ve~i~~~eiD~~Vie~sk~y~p~la~gy~---~~~v~l~iGDG~~fl~~~~--~~~~dVii~dssdpvgpa~~lf~~~~ 218 (337)
T KOG1562|consen 144 SVENILLCEIDENVIESSKQYLPTLACGYE---GKKVKLLIGDGFLFLEDLK--ENPFDVIITDSSDPVGPACALFQKPY 218 (337)
T ss_pred cccceeeehhhHHHHHHHHHHhHHHhcccC---CCceEEEeccHHHHHHHhc--cCCceEEEEecCCccchHHHHHHHHH
Confidence 356789999999999988876664 3553 3578888899999998763 4589999987 45532 155
Q ss_pred HHHHHHhcccCCEEEEEec
Q 019408 86 LRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 86 ld~al~~v~~gGlL~vt~T 104 (341)
....+.++|.+|++++.+-
T Consensus 219 ~~~v~~aLk~dgv~~~q~e 237 (337)
T KOG1562|consen 219 FGLVLDALKGDGVVCTQGE 237 (337)
T ss_pred HHHHHHhhCCCcEEEEecc
Confidence 5677889999999998653
No 229
>PRK05785 hypothetical protein; Provisional
Probab=91.58 E-value=1.1 Score=41.20 Aligned_cols=77 Identities=12% Similarity=0.041 Sum_probs=52.2
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||||..+...+... ..+|+++|+|++.++..++.. ..+++|+..+ ....+.||+|..--
T Consensus 60 cGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~~-------------~~~~~d~~~l----p~~d~sfD~v~~~~~l~ 121 (226)
T PRK05785 60 AGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVAD-------------DKVVGSFEAL----PFRDKSFDVVMSSFALH 121 (226)
T ss_pred CCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhcc-------------ceEEechhhC----CCCCCCEEEEEecChhh
Confidence 79999988877632 358999999999999877531 1246777643 22346899997643
Q ss_pred -CCCCHHHHHHHHHhcccC
Q 019408 79 -FGSDSSFLRTVFNAVKRD 96 (341)
Q Consensus 79 -ygsp~~fld~al~~v~~g 96 (341)
+..+...+....+.+++.
T Consensus 122 ~~~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 122 ASDNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred ccCCHHHHHHHHHHHhcCc
Confidence 222345566667788874
No 230
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=91.56 E-value=0.32 Score=45.13 Aligned_cols=84 Identities=19% Similarity=0.027 Sum_probs=49.5
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHH-HHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRV-ILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~-i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
||||.++..++. .|+.+|+++|+++.-+.. +++|.+- ...-..|+..+-.+ .-..|++..|= |
T Consensus 84 ~gtG~~t~~l~~-~ga~~v~avD~~~~~l~~~l~~~~~v----------~~~~~~ni~~~~~~----~~~~d~~~~Dvsf 148 (228)
T TIGR00478 84 SSTGGFTDCALQ-KGAKEVYGVDVGYNQLAEKLRQDERV----------KVLERTNIRYVTPA----DIFPDFATFDVSF 148 (228)
T ss_pred cCCCHHHHHHHH-cCCCEEEEEeCCHHHHHHHHhcCCCe----------eEeecCCcccCCHh----HcCCCceeeeEEE
Confidence 799999998887 699999999999964433 4443221 00111222211000 01136666665 5
Q ss_pred CCCHHHHHHHHHhcccCCEEEE
Q 019408 80 GSDSSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 80 gsp~~fld~al~~v~~gGlL~v 101 (341)
-|-+-.++...+++++ |.+.+
T Consensus 149 iS~~~~l~~i~~~l~~-~~~~~ 169 (228)
T TIGR00478 149 ISLISILPELDLLLNP-NDLTL 169 (228)
T ss_pred eehHhHHHHHHHHhCc-CeEEE
Confidence 5554556777788888 66654
No 231
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=91.42 E-value=1.5 Score=41.01 Aligned_cols=88 Identities=16% Similarity=0.122 Sum_probs=56.4
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
+.|...+.+|+..|+.+|+++|.+++-.+++++ .+.+ .+ +...+..+.+.+. ..+..+|+| +|--|.+
T Consensus 131 ~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~-----~~-i~~~~~~~~~~~~-~~~~g~d~v-id~~G~~ 198 (280)
T TIGR03366 131 MLGLTAAAAAAAAGAARVVAADPSPDRRELALS----FGAT-----AL-AEPEVLAERQGGL-QNGRGVDVA-LEFSGAT 198 (280)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCc-----Ee-cCchhhHHHHHHH-hCCCCCCEE-EECCCCh
Confidence 456677778887899889999999988777665 4441 11 1111111222222 123468976 4766654
Q ss_pred HHHHHHHHHhcccCCEEEEEe
Q 019408 83 SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~vt~ 103 (341)
.-++.++++++++|.+.+..
T Consensus 199 -~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 199 -AAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred -HHHHHHHHHhcCCCEEEEec
Confidence 56778999999999998644
No 232
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=91.17 E-value=1.3 Score=42.29 Aligned_cols=89 Identities=17% Similarity=0.088 Sum_probs=56.1
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
+.|...+.+|+..|+++|++.|.+++-.+.+++ .+.. ..+.....+ .+.+.+. ..+..+|+|+ |--|++
T Consensus 174 ~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~----~ga~----~~i~~~~~~-~~~~~~~-~~~~~~d~vi-d~~g~~ 242 (339)
T cd08239 174 PVGLGALMLARALGAEDVIGVDPSPERLELAKA----LGAD----FVINSGQDD-VQEIREL-TSGAGADVAI-ECSGNT 242 (339)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCC----EEEcCCcch-HHHHHHH-hCCCCCCEEE-ECCCCH
Confidence 456677788887898889999999887777644 3431 111111122 2223222 2234689764 665543
Q ss_pred HHHHHHHHHhcccCCEEEEEe
Q 019408 83 SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~vt~ 103 (341)
..++.++++++.+|-+++..
T Consensus 243 -~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 243 -AARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred -HHHHHHHHHhhcCCEEEEEc
Confidence 56678899999999998644
No 233
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=91.13 E-value=1.1 Score=43.84 Aligned_cols=88 Identities=20% Similarity=0.130 Sum_probs=57.2
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
+.|...+.+|+..|+++|++.|.+++-.+++++ .+.+ ..+.....|..+.+.+.. +..+|+|+ |--|.+
T Consensus 202 ~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~----~~i~~~~~~~~~~i~~~~--~~g~d~vi-d~~G~~ 270 (371)
T cd08281 202 GVGLSALLGAVAAGASQVVAVDLNEDKLALARE----LGAT----ATVNAGDPNAVEQVRELT--GGGVDYAF-EMAGSV 270 (371)
T ss_pred HHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----cCCc----eEeCCCchhHHHHHHHHh--CCCCCEEE-ECCCCh
Confidence 456667778887899889999999998887765 4442 111111233333344332 22689764 665543
Q ss_pred HHHHHHHHHhcccCCEEEEE
Q 019408 83 SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~vt 102 (341)
..++.++++++++|-+++.
T Consensus 271 -~~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 271 -PALETAYEITRRGGTTVTA 289 (371)
T ss_pred -HHHHHHHHHHhcCCEEEEE
Confidence 5778899999999988763
No 234
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=90.75 E-value=1.4 Score=42.99 Aligned_cols=87 Identities=15% Similarity=0.143 Sum_probs=58.0
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
+|.|..+|..|+..|+ .+++.-.+++-.+.+++ .+.+ .-+.....|.-+-+++. ..++.+|+| +|+-|.
T Consensus 153 GgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~----lGAd----~vi~y~~~~~~~~v~~~-t~g~gvDvv-~D~vG~ 221 (326)
T COG0604 153 GGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKE----LGAD----HVINYREEDFVEQVREL-TGGKGVDVV-LDTVGG 221 (326)
T ss_pred chHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHh----cCCC----EEEcCCcccHHHHHHHH-cCCCCceEE-EECCCH
Confidence 4678888999998888 56666666666665444 4431 12223345555555443 234569975 689775
Q ss_pred CHHHHHHHHHhcccCCEEEE
Q 019408 82 DSSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 82 p~~fld~al~~v~~gGlL~v 101 (341)
+.+..+++.++++|.+.+
T Consensus 222 --~~~~~~l~~l~~~G~lv~ 239 (326)
T COG0604 222 --DTFAASLAALAPGGRLVS 239 (326)
T ss_pred --HHHHHHHHHhccCCEEEE
Confidence 777779999999999986
No 235
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=90.53 E-value=0.72 Score=44.00 Aligned_cols=77 Identities=21% Similarity=0.196 Sum_probs=52.2
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
++.|..++.+|+..|+..|++.|.+++-.+.+++. . +++ ..+. .+..||+|+ |--|.
T Consensus 154 G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~----------~i~--~~~~------~~~g~Dvvi-d~~G~ 210 (308)
T TIGR01202 154 GTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----E----------VLD--PEKD------PRRDYRAIY-DASGD 210 (308)
T ss_pred CHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----c----------ccC--hhhc------cCCCCCEEE-ECCCC
Confidence 35677788888878998888889988765544321 1 111 0000 134689664 88776
Q ss_pred CHHHHHHHHHhcccCCEEEEE
Q 019408 82 DSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 82 p~~fld~al~~v~~gGlL~vt 102 (341)
+ ..++.++++++++|.+.+.
T Consensus 211 ~-~~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 211 P-SLIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred H-HHHHHHHHhhhcCcEEEEE
Confidence 4 5678999999999999964
No 236
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=89.94 E-value=2.2 Score=40.79 Aligned_cols=87 Identities=16% Similarity=0.143 Sum_probs=57.7
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
|.|...+.+|+..|+.+|++.+.+++-.+.+++. .+.+ ..+.....|..+.+.+.. +..+|+|+ |.-|.
T Consensus 166 ~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~---lGa~----~vi~~~~~~~~~~i~~~~--~~gvd~vi-d~~g~- 234 (345)
T cd08293 166 ACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSE---LGFD----AAINYKTDNVAERLRELC--PEGVDVYF-DNVGG- 234 (345)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh---cCCc----EEEECCCCCHHHHHHHHC--CCCceEEE-ECCCc-
Confidence 5667778888878887899999998877777653 2432 111111234444444432 34689775 88775
Q ss_pred HHHHHHHHHhcccCCEEEE
Q 019408 83 SSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~v 101 (341)
+.++.++++++++|-++.
T Consensus 235 -~~~~~~~~~l~~~G~iv~ 252 (345)
T cd08293 235 -EISDTVISQMNENSHIIL 252 (345)
T ss_pred -HHHHHHHHHhccCCEEEE
Confidence 346889999999999885
No 237
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=89.92 E-value=0.6 Score=45.47 Aligned_cols=66 Identities=18% Similarity=0.113 Sum_probs=47.8
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS 78 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP 78 (341)
|||.|.+++=+-. .|.+-+++||+++.|+++.+.|... ..+...|...+..+... +..+|+|.-=|
T Consensus 10 FsG~GG~~lGf~~-agf~~~~a~Eid~~a~~ty~~n~~~----------~~~~~~di~~~~~~~~~-~~~~DvligGp 75 (328)
T COG0270 10 FAGIGGLSLGFEE-AGFEIVFANEIDPPAVATYKANFPH----------GDIILGDIKELDGEALR-KSDVDVLIGGP 75 (328)
T ss_pred ccCCchHHHHHHh-cCCeEEEEEecCHHHHHHHHHhCCC----------CceeechHhhcChhhcc-ccCCCEEEeCC
Confidence 7888887744433 7889999999999999999998873 23456777766544321 11678887776
No 238
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=89.90 E-value=1.7 Score=42.42 Aligned_cols=87 Identities=14% Similarity=0.076 Sum_probs=58.2
Q ss_pred ccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEe----ccHHHHHHHhhhcCCcccEEEeCCC
Q 019408 4 CGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTH----FDANRVLSECYLKREFFDLIDIDSF 79 (341)
Q Consensus 4 sG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~----~DA~~~l~~~~~~~~~fDvIdlDPy 79 (341)
.|+..+.+|+-.||++|++.|.++..++++++ .|.+ ......+ .+..+....... +..||+.+ |-=
T Consensus 181 IGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~----~Ga~----~~~~~~~~~~~~~~~~~v~~~~g-~~~~d~~~-dCs 250 (354)
T KOG0024|consen 181 IGLLTGLVAKAMGASDVVITDLVANRLELAKK----FGAT----VTDPSSHKSSPQELAELVEKALG-KKQPDVTF-DCS 250 (354)
T ss_pred HHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH----hCCe----EEeeccccccHHHHHHHHHhhcc-ccCCCeEE-Ecc
Confidence 57888889988899999999999999999998 4442 1111122 233333333322 23488764 333
Q ss_pred CCCHHHHHHHHHhcccCCEEEE
Q 019408 80 GSDSSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 80 gsp~~fld~al~~v~~gGlL~v 101 (341)
| ..+-++.|+++++.||.+.+
T Consensus 251 G-~~~~~~aai~a~r~gGt~vl 271 (354)
T KOG0024|consen 251 G-AEVTIRAAIKATRSGGTVVL 271 (354)
T ss_pred C-chHHHHHHHHHhccCCEEEE
Confidence 3 23668899999999999665
No 239
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=89.78 E-value=0.38 Score=47.12 Aligned_cols=106 Identities=19% Similarity=0.168 Sum_probs=63.1
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCC-CC----CccEEEEeccHHHH-HHHhhhc-CCcccEEE
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGS-GD----EKRWVVTHFDANRV-LSECYLK-REFFDLID 75 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~-~~----~~~~~v~~~DA~~~-l~~~~~~-~~~fDvId 75 (341)
|=|.==.-|.. .++.+++.+|+++.+++-+++=.+...-.. .. .-....+..|++.- +...... ..+||+|-
T Consensus 72 GkGGDL~Kw~~-~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVS 150 (331)
T PF03291_consen 72 GKGGDLQKWQK-AKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPPRSRKFDVVS 150 (331)
T ss_dssp TTTTTHHHHHH-TT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEE
T ss_pred CCchhHHHHHh-cCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccccCCCcceee
Confidence 33333345555 689999999999999998887663211000 00 01345678888632 2222222 35899995
Q ss_pred eCC-----CCC---CHHHHHHHHHhcccCCEEEEEecCCCCC
Q 019408 76 IDS-----FGS---DSSFLRTVFNAVKRDGLLYLTSTDGYSS 109 (341)
Q Consensus 76 lDP-----ygs---p~~fld~al~~v~~gGlL~vt~TD~~~l 109 (341)
+== |.+ +..|+..+-..|++||+++.|..|...+
T Consensus 151 cQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i 192 (331)
T PF03291_consen 151 CQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEI 192 (331)
T ss_dssp EES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHH
T ss_pred hHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHH
Confidence 542 333 3357778888999999999988876554
No 240
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=89.22 E-value=0.83 Score=48.66 Aligned_cols=52 Identities=17% Similarity=0.112 Sum_probs=40.1
Q ss_pred cEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC---C----HHHHHHHHHhcccCCEEEEEec
Q 019408 49 RWVVTHFDANRVLSECYLKREFFDLIDIDSFGS---D----SSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 49 ~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs---p----~~fld~al~~v~~gGlL~vt~T 104 (341)
..++..+||.+.+.++. .+||+|++|||.. | .+++...-+++++||.|.. .|
T Consensus 148 ~l~l~~gd~~~~~~~~~---~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t-~t 206 (662)
T PRK01747 148 TLDLWFGDANELLPQLD---ARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLAT-FT 206 (662)
T ss_pred EEEEEecCHHHHHHhcc---ccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEE-ee
Confidence 34578899999998763 3699999999973 1 3666777788999999984 54
No 241
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=89.19 E-value=2.2 Score=41.43 Aligned_cols=78 Identities=21% Similarity=0.126 Sum_probs=55.3
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcC-CcccEEEeCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKR-EFFDLIDIDSFGS 81 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~-~~fDvIdlDPygs 81 (341)
|-|.=+...+...+..+|+++|.++.|++..+++++..+ +++++++++-..+...+...+ ..+|.|.+|- |-
T Consensus 30 G~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~------~R~~~i~~nF~~l~~~l~~~~~~~vDgIl~DL-Gv 102 (305)
T TIGR00006 30 GFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE------GRVVLIHDNFANFFEHLDELLVTKIDGILVDL-GV 102 (305)
T ss_pred CChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC------CcEEEEeCCHHHHHHHHHhcCCCcccEEEEec-cC
Confidence 667777777764333789999999999999999887431 467888888877665443222 4699999997 33
Q ss_pred CHHHHH
Q 019408 82 DSSFLR 87 (341)
Q Consensus 82 p~~fld 87 (341)
.++.+|
T Consensus 103 SS~Qld 108 (305)
T TIGR00006 103 SSPQLD 108 (305)
T ss_pred CHhhcC
Confidence 335555
No 242
>PLN02740 Alcohol dehydrogenase-like
Probab=89.17 E-value=2.3 Score=41.82 Aligned_cols=87 Identities=15% Similarity=0.053 Sum_probs=56.3
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEe--ccHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTH--FDANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~--~DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
+.|...+.+|+..|+.+|+++|.+++-.+.+++ .+.+ ..+.... .|..+.+.+.. .+ .+|+| +|--|
T Consensus 209 ~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~----~~i~~~~~~~~~~~~v~~~~-~~-g~dvv-id~~G 277 (381)
T PLN02740 209 AVGLAVAEGARARGASKIIGVDINPEKFEKGKE----MGIT----DFINPKDSDKPVHERIREMT-GG-GVDYS-FECAG 277 (381)
T ss_pred HHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH----cCCc----EEEecccccchHHHHHHHHh-CC-CCCEE-EECCC
Confidence 456677888888898889999999988887765 4442 1111111 12333343332 22 58965 67767
Q ss_pred CCHHHHHHHHHhcccC-CEEEE
Q 019408 81 SDSSFLRTVFNAVKRD-GLLYL 101 (341)
Q Consensus 81 sp~~fld~al~~v~~g-GlL~v 101 (341)
.+ ..++.+++++++| |.+.+
T Consensus 278 ~~-~~~~~a~~~~~~g~G~~v~ 298 (381)
T PLN02740 278 NV-EVLREAFLSTHDGWGLTVL 298 (381)
T ss_pred Ch-HHHHHHHHhhhcCCCEEEE
Confidence 54 6788899999886 87765
No 243
>PLN02827 Alcohol dehydrogenase-like
Probab=89.14 E-value=2.6 Score=41.51 Aligned_cols=87 Identities=11% Similarity=0.062 Sum_probs=56.7
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEe---ccHHHHHHHhhhcCCcccEEEeCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTH---FDANRVLSECYLKREFFDLIDIDSF 79 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~---~DA~~~l~~~~~~~~~fDvIdlDPy 79 (341)
+.|...+.+|+..|+..|++.|.+++-.+.+++ .+.+ .+.-.+ .|..+.+.+... + .+|+| +|.-
T Consensus 204 ~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~----lGa~-----~~i~~~~~~~~~~~~v~~~~~-~-g~d~v-id~~ 271 (378)
T PLN02827 204 TVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT----FGVT-----DFINPNDLSEPIQQVIKRMTG-G-GADYS-FECV 271 (378)
T ss_pred HHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCc-----EEEcccccchHHHHHHHHHhC-C-CCCEE-EECC
Confidence 456666778887898889999999887776644 4542 211111 234444444322 2 68976 4776
Q ss_pred CCCHHHHHHHHHhcccC-CEEEEE
Q 019408 80 GSDSSFLRTVFNAVKRD-GLLYLT 102 (341)
Q Consensus 80 gsp~~fld~al~~v~~g-GlL~vt 102 (341)
|.+ ..+..+++++++| |.+.+-
T Consensus 272 G~~-~~~~~~l~~l~~g~G~iv~~ 294 (378)
T PLN02827 272 GDT-GIATTALQSCSDGWGLTVTL 294 (378)
T ss_pred CCh-HHHHHHHHhhccCCCEEEEE
Confidence 754 4678899999998 998753
No 244
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=88.89 E-value=3.2 Score=39.46 Aligned_cols=85 Identities=15% Similarity=0.127 Sum_probs=56.8
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEe--ccHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTH--FDANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~--~DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
+.|...+.+|+..|+ +|++.+.+++-.+.+++ .+.+ .+--.. .+..+.+... .+..+|+|+ |..|
T Consensus 150 ~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~~~----lGa~-----~vi~~~~~~~~~~~~~~~--~~~gvdvv~-d~~G 216 (325)
T TIGR02825 150 AVGSVVGQIAKLKGC-KVVGAAGSDEKVAYLKK----LGFD-----VAFNYKTVKSLEETLKKA--SPDGYDCYF-DNVG 216 (325)
T ss_pred HHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCC-----EEEeccccccHHHHHHHh--CCCCeEEEE-ECCC
Confidence 467777888887787 58889999888777754 4442 211112 1233334333 234689775 8887
Q ss_pred CCHHHHHHHHHhcccCCEEEEE
Q 019408 81 SDSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 81 sp~~fld~al~~v~~gGlL~vt 102 (341)
. +.++.++++++++|-+..-
T Consensus 217 ~--~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 217 G--EFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred H--HHHHHHHHHhCcCcEEEEe
Confidence 5 5568899999999999863
No 245
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=88.01 E-value=0.66 Score=43.96 Aligned_cols=63 Identities=19% Similarity=0.048 Sum_probs=42.5
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS 78 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP 78 (341)
|||.|.+++=+-. .|.+.|+++|+++.|+++.+.|.. . +..+|..++-.... .+ .+|+|.-=|
T Consensus 7 FsG~Gg~~~g~~~-ag~~~~~a~e~~~~a~~~y~~N~~-~-----------~~~~Di~~~~~~~l-~~-~~D~l~ggp 69 (335)
T PF00145_consen 7 FSGIGGFSLGLEQ-AGFEVVWAVEIDPDACETYKANFP-E-----------VICGDITEIDPSDL-PK-DVDLLIGGP 69 (335)
T ss_dssp T-TTTHHHHHHHH-TTEEEEEEEESSHHHHHHHHHHHT-E-----------EEESHGGGCHHHHH-HH-T-SEEEEE-
T ss_pred ccCccHHHHHHHh-cCcEEEEEeecCHHHHHhhhhccc-c-----------cccccccccccccc-cc-cceEEEecc
Confidence 7899987765544 788899999999999999999996 2 23444444432211 11 489998887
No 246
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=87.98 E-value=6 Score=30.69 Aligned_cols=77 Identities=17% Similarity=0.106 Sum_probs=49.5
Q ss_pred EEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeC---CCCCCHHHHHHHHHhcccC
Q 019408 20 VMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDID---SFGSDSSFLRTVFNAVKRD 96 (341)
Q Consensus 20 V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlD---Pygsp~~fld~al~~v~~g 96 (341)
|..+|-++...+.+++-++..++. .+ ....|..+.+..... ..||+|++| |-++...++...-+.-...
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~-----~v-~~~~~~~~~~~~~~~--~~~d~iiid~~~~~~~~~~~~~~i~~~~~~~ 72 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYE-----EV-TTASSGEEALELLKK--HPPDLIIIDLELPDGDGLELLEQIRQINPSI 72 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEE-----EE-EEESSHHHHHHHHHH--STESEEEEESSSSSSBHHHHHHHHHHHTTTS
T ss_pred cEEEECCHHHHHHHHHHHHhCCCC-----EE-EEECCHHHHHHHhcc--cCceEEEEEeeeccccccccccccccccccc
Confidence 567899999999999999966551 22 356677777766533 469999999 4343344454432222344
Q ss_pred CEEEEEec
Q 019408 97 GLLYLTST 104 (341)
Q Consensus 97 GlL~vt~T 104 (341)
.++.+|.+
T Consensus 73 ~ii~~t~~ 80 (112)
T PF00072_consen 73 PIIVVTDE 80 (112)
T ss_dssp EEEEEESS
T ss_pred cEEEecCC
Confidence 55556544
No 247
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=87.84 E-value=3.3 Score=39.08 Aligned_cols=86 Identities=15% Similarity=0.114 Sum_probs=57.2
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
+.|...+++|+..|+ +|++.+.+++-.+.+++ .+.+ .-+.....|..+.+.... +..+|+|+ |..|.
T Consensus 155 ~vG~~aiqlA~~~G~-~vi~~~~s~~~~~~l~~----~Ga~----~vi~~~~~~~~~~v~~~~--~~gvd~vl-d~~g~- 221 (329)
T cd08294 155 AVGSLVGQIAKIKGC-KVIGCAGSDDKVAWLKE----LGFD----AVFNYKTVSLEEALKEAA--PDGIDCYF-DNVGG- 221 (329)
T ss_pred HHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCC----EEEeCCCccHHHHHHHHC--CCCcEEEE-ECCCH-
Confidence 456677888887787 58899999988888765 3442 111111234444444332 34689765 88775
Q ss_pred HHHHHHHHHhcccCCEEEEE
Q 019408 83 SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~vt 102 (341)
+.+..++++++++|-+...
T Consensus 222 -~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 222 -EFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred -HHHHHHHHhhccCCEEEEE
Confidence 6778899999999998753
No 248
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=87.66 E-value=0.22 Score=48.88 Aligned_cols=71 Identities=23% Similarity=0.207 Sum_probs=50.1
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHH-------HHHHHHHHcCCCCCCCcc-EEEEeccHHHHHHHhhhcCCccc
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRR-------VILGNLKSIERGSGDEKR-WVVTHFDANRVLSECYLKREFFD 72 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~-------~i~~N~~~n~~~~~~~~~-~~v~~~DA~~~l~~~~~~~~~fD 72 (341)
|.|||.+=+-+|. -|| .|+.-|||-..+. .|+.|++.-+.. .. ..++.+|...-- ..+...||
T Consensus 216 FVGTGslLvsaa~-FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~----~~fldvl~~D~sn~~---~rsn~~fD 286 (421)
T KOG2671|consen 216 FVGTGSLLVSAAH-FGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSS----SQFLDVLTADFSNPP---LRSNLKFD 286 (421)
T ss_pred ccccCceeeehhh-hcc-eeeccccchheeecccCCCcchhHhHHHhCCc----chhhheeeecccCcc---hhhcceee
Confidence 6799987666665 565 6899999966555 789999987753 22 346677765431 12256899
Q ss_pred EEEeCC-CC
Q 019408 73 LIDIDS-FG 80 (341)
Q Consensus 73 vIdlDP-yg 80 (341)
-|+.|| ||
T Consensus 287 aIvcDPPYG 295 (421)
T KOG2671|consen 287 AIVCDPPYG 295 (421)
T ss_pred EEEeCCCcc
Confidence 999999 76
No 249
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=87.60 E-value=8.6 Score=36.37 Aligned_cols=120 Identities=17% Similarity=0.199 Sum_probs=84.9
Q ss_pred CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CCCCHHHH------H
Q 019408 15 AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FGSDSSFL------R 87 (341)
Q Consensus 15 ~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-ygsp~~fl------d 87 (341)
+..++..+++..|+-..+++.|+.. +.+++|.+.|-+..+....-.+++=-+|.||| |-...+|- .
T Consensus 108 R~qDRl~l~ELHp~D~~~L~~~f~~-------d~~vrv~~~DG~~~l~a~LPP~erRglVLIDPPfE~~~eY~rvv~~l~ 180 (279)
T COG2961 108 REQDRLVLTELHPSDAPLLRNNFAG-------DRRVRVLRGDGFLALKAHLPPKERRGLVLIDPPFELKDEYQRVVEALA 180 (279)
T ss_pred chhceeeeeecCccHHHHHHHHhCC-------CcceEEEecCcHHHHhhhCCCCCcceEEEeCCCcccccHHHHHHHHHH
Confidence 5678999999999999999999982 14789999999999987766666678999999 76544441 1
Q ss_pred ---------------------------HHHHhcccCCEEEEEe-----cCCCCCCCCCchhHHhhhccccCCCCCchhhh
Q 019408 88 ---------------------------TVFNAVKRDGLLYLTS-----TDGYSSGGHRPNNSLASYGAYILPMPYSNEIG 135 (341)
Q Consensus 88 ---------------------------~al~~v~~gGlL~vt~-----TD~~~l~g~~~~~~~r~Yg~~~~~~~~~~E~~ 135 (341)
.+++.+.-.-+|.++- +|..-+.|+ |-...+-+|.=|..
T Consensus 181 ~~~kRf~~g~yaiWYPik~r~~~~~f~~~L~~~~i~kiL~iEL~VrP~~d~~gm~gS---------GMivINPPwtle~q 251 (279)
T COG2961 181 EAYKRFATGTYAIWYPIKDRRQIRRFLRALEALGIRKILQIELAVRPDSDPRGMNGS---------GMIVINPPWTLEQQ 251 (279)
T ss_pred HHHHhhcCceEEEEEeecchHHHHHHHHHHhhcCccceeeeEEEecCCCCCCCccce---------eEEEECCCccHHHH
Confidence 2233333334455432 222223332 34567889999999
Q ss_pred HHHHHHHHHHHHHhc
Q 019408 136 LRMLIGGAVREASAQ 150 (341)
Q Consensus 136 lR~ll~~i~~~Aa~~ 150 (341)
++.++-.+.+.-+.-
T Consensus 252 l~~~LP~L~~~L~~~ 266 (279)
T COG2961 252 LRAALPWLTTLLAQD 266 (279)
T ss_pred HHHHHHHHHHHhccC
Confidence 999999988876654
No 250
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=87.10 E-value=5.1 Score=38.07 Aligned_cols=88 Identities=14% Similarity=0.056 Sum_probs=54.4
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
+.|...+.+|+..|+ +|++.+.+++-.+.+++ .+.+ .-+.....|..+.+.+.. .+..+|+|+ |.-|.
T Consensus 155 ~vG~~a~q~a~~~G~-~vi~~~~~~~~~~~~~~----~g~~----~~i~~~~~~~~~~v~~~~-~~~~~d~vi-d~~g~- 222 (324)
T cd08291 155 ALGRMLVRLCKADGI-KVINIVRRKEQVDLLKK----IGAE----YVLNSSDPDFLEDLKELI-AKLNATIFF-DAVGG- 222 (324)
T ss_pred HHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCc----EEEECCCccHHHHHHHHh-CCCCCcEEE-ECCCc-
Confidence 345555677777788 58899999988877765 4542 111111234333343332 234689775 87665
Q ss_pred HHHHHHHHHhcccCCEEEEEe
Q 019408 83 SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~vt~ 103 (341)
+....+++.++++|-+++..
T Consensus 223 -~~~~~~~~~l~~~G~~v~~g 242 (324)
T cd08291 223 -GLTGQILLAMPYGSTLYVYG 242 (324)
T ss_pred -HHHHHHHHhhCCCCEEEEEE
Confidence 44566789999999887543
No 251
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=86.85 E-value=1.2 Score=43.18 Aligned_cols=63 Identities=17% Similarity=0.132 Sum_probs=45.7
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS 78 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP 78 (341)
|||.|.+++=+-. .|.+-|+++|+++.|+++.+.|... .++++|..++-... -..+|++.--|
T Consensus 5 F~G~GG~~~Gl~~-aG~~~~~a~e~~~~a~~ty~~N~~~-----------~~~~~Di~~~~~~~---~~~~dvl~gg~ 67 (315)
T TIGR00675 5 FAGIGGIRLGFEQ-AGFKCVFASEIDKYAQKTYEANFGN-----------KVPFGDITKISPSD---IPDFDILLGGF 67 (315)
T ss_pred ecCccHHHHHHHH-cCCeEEEEEeCCHHHHHHHHHhCCC-----------CCCccChhhhhhhh---CCCcCEEEecC
Confidence 7999987765544 7888899999999999999998641 23456766653221 12479988887
No 252
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=86.76 E-value=1.1 Score=41.38 Aligned_cols=82 Identities=18% Similarity=0.137 Sum_probs=60.4
Q ss_pred cHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC--
Q 019408 5 GIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD-- 82 (341)
Q Consensus 5 G~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp-- 82 (341)
+.+.+...+..-++.+++.|+++..++...+|++.+++. +++++..+|-+..+.. +..+|+|.+-=.|-.
T Consensus 28 AYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~----~~i~vr~~dgl~~l~~----~d~~d~ivIAGMGG~lI 99 (226)
T COG2384 28 AYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLS----ERIDVRLGDGLAVLEL----EDEIDVIVIAGMGGTLI 99 (226)
T ss_pred hHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCc----ceEEEeccCCccccCc----cCCcCEEEEeCCcHHHH
Confidence 345666666334789999999999999999999999885 6788888988766643 336899998887742
Q ss_pred HHHHHHHHHhcc
Q 019408 83 SSFLRTVFNAVK 94 (341)
Q Consensus 83 ~~fld~al~~v~ 94 (341)
+.+++..-+.++
T Consensus 100 ~~ILee~~~~l~ 111 (226)
T COG2384 100 REILEEGKEKLK 111 (226)
T ss_pred HHHHHHhhhhhc
Confidence 245555544444
No 253
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=86.70 E-value=3.2 Score=40.18 Aligned_cols=84 Identities=14% Similarity=0.111 Sum_probs=52.5
Q ss_pred cccHhHHHHhhhCCCCEEEEeeC---CHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDG---NDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSF 79 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Di---s~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPy 79 (341)
+.|..++.+|+..|+ +|+++|. +++-.+++++ .+. +.+.....|..+ .. ....||+ ++|.-
T Consensus 183 ~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~----~Ga-----~~v~~~~~~~~~-~~----~~~~~d~-vid~~ 246 (355)
T cd08230 183 PIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEE----LGA-----TYVNSSKTPVAE-VK----LVGEFDL-IIEAT 246 (355)
T ss_pred HHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHH----cCC-----EEecCCccchhh-hh----hcCCCCE-EEECc
Confidence 456677778887788 6888886 6777776654 443 111111112111 11 1236884 56787
Q ss_pred CCCHHHHHHHHHhcccCCEEEEEe
Q 019408 80 GSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 gsp~~fld~al~~v~~gGlL~vt~ 103 (341)
|++ ..++.+++.++++|.+++..
T Consensus 247 g~~-~~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 247 GVP-PLAFEALPALAPNGVVILFG 269 (355)
T ss_pred CCH-HHHHHHHHHccCCcEEEEEe
Confidence 754 57889999999999887643
No 254
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=86.57 E-value=3.7 Score=39.66 Aligned_cols=89 Identities=13% Similarity=0.107 Sum_probs=55.6
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEec---cHHHHHHHhhhcCCcccE---EEe
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHF---DANRVLSECYLKREFFDL---IDI 76 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~---DA~~~l~~~~~~~~~fDv---Idl 76 (341)
+.|...+.+|+..|+ +|++.|.+++-.+.+++ .+.. ..+..... |..+.+.+. ..+..+|. +.+
T Consensus 177 ~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~----~Ga~----~~i~~~~~~~~~~~~~~~~~-t~~~g~d~~~d~v~ 246 (349)
T TIGR03201 177 GVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKG----FGAD----LTLNPKDKSAREVKKLIKAF-AKARGLRSTGWKIF 246 (349)
T ss_pred HHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH----hCCc----eEecCccccHHHHHHHHHhh-cccCCCCCCcCEEE
Confidence 346666778887788 59999999988777654 3431 11111121 333333332 22345662 567
Q ss_pred CCCCCCHHHHHHHHHhcccCCEEEEE
Q 019408 77 DSFGSDSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 77 DPygsp~~fld~al~~v~~gGlL~vt 102 (341)
|.-|.+ ..++.+++++++||.+.+.
T Consensus 247 d~~g~~-~~~~~~~~~l~~~G~iv~~ 271 (349)
T TIGR03201 247 ECSGSK-PGQESALSLLSHGGTLVVV 271 (349)
T ss_pred ECCCCh-HHHHHHHHHHhcCCeEEEE
Confidence 887754 6778899999999999863
No 255
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=86.53 E-value=4.2 Score=39.89 Aligned_cols=90 Identities=18% Similarity=0.131 Sum_probs=58.1
Q ss_pred cccHhHHH---HhhhCCCCEEEEeeCCHHHHHHHHH-HHHHcCCCCCCCccEEEEec-cHHHHHHHhhhcCCcccEEEeC
Q 019408 3 GCGIRSLR---YLAEAKADFVMANDGNDAHRRVILG-NLKSIERGSGDEKRWVVTHF-DANRVLSECYLKREFFDLIDID 77 (341)
Q Consensus 3 gsG~rgir---~a~e~ga~~V~~~Dis~~A~~~i~~-N~~~n~~~~~~~~~~~v~~~-DA~~~l~~~~~~~~~fDvIdlD 77 (341)
|.|..|+- .++-.|+..|+++|.+++-++++++ .... .+..... |+-..+.+. ..+..+|+|+ |
T Consensus 176 GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~---------~~~~~~~~~~~~~~~~~-t~g~g~D~vi-e 244 (350)
T COG1063 176 GAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD---------VVVNPSEDDAGAEILEL-TGGRGADVVI-E 244 (350)
T ss_pred CCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe---------EeecCccccHHHHHHHH-hCCCCCCEEE-E
Confidence 55555554 5555799999999999999999987 2211 1111111 333333322 2345799765 3
Q ss_pred CCCCCHHHHHHHHHhcccCCEEEEEec
Q 019408 78 SFGSDSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 78 Pygsp~~fld~al~~v~~gGlL~vt~T 104 (341)
-=|++ +.++.|++++++||-+.+..+
T Consensus 245 ~~G~~-~~~~~ai~~~r~gG~v~~vGv 270 (350)
T COG1063 245 AVGSP-PALDQALEALRPGGTVVVVGV 270 (350)
T ss_pred CCCCH-HHHHHHHHHhcCCCEEEEEec
Confidence 33543 678999999999999998665
No 256
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=86.27 E-value=5.2 Score=39.28 Aligned_cols=89 Identities=12% Similarity=0.077 Sum_probs=56.7
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEec----cHHHHHHHhhhcCCcccEEEeCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHF----DANRVLSECYLKREFFDLIDIDS 78 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~----DA~~~l~~~~~~~~~fDvIdlDP 78 (341)
+.|...+++|+..|+.+|++.+.+++-.+++++ .+++ .+...+. +..+.+.+. ..++.+|+|+ |.
T Consensus 214 ~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~----~g~~-----~~v~~~~~~~~~~~~~v~~~-~~g~gvDvvl-d~ 282 (384)
T cd08265 214 PIGLAAIALAKAAGASKVIAFEISEERRNLAKE----MGAD-----YVFNPTKMRDCLSGEKVMEV-TKGWGADIQV-EA 282 (384)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCC-----EEEcccccccccHHHHHHHh-cCCCCCCEEE-EC
Confidence 456667778887898889999999886655554 3431 2111111 222333333 2345689765 88
Q ss_pred CCCCHHHHHHHHHhcccCCEEEEE
Q 019408 79 FGSDSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 79 ygsp~~fld~al~~v~~gGlL~vt 102 (341)
.|.+...++.+++.++.+|-+...
T Consensus 283 ~g~~~~~~~~~~~~l~~~G~~v~~ 306 (384)
T cd08265 283 AGAPPATIPQMEKSIAINGKIVYI 306 (384)
T ss_pred CCCcHHHHHHHHHHHHcCCEEEEE
Confidence 775545778889999999988753
No 257
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=85.79 E-value=1.8 Score=39.49 Aligned_cols=149 Identities=18% Similarity=0.173 Sum_probs=91.6
Q ss_pred ccccHhHHHHhhh-CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHh----hhcCCcccEEEe
Q 019408 2 CGCGIRSLRYLAE-AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSEC----YLKREFFDLIDI 76 (341)
Q Consensus 2 agsG~rgir~a~e-~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~----~~~~~~fDvIdl 76 (341)
||||-=+..+|.. ... .=.--|.++.....|+..+...++. +-...+..|+.+---.. ......||.|+.
T Consensus 34 SGtGqHa~~FA~~lP~l-~WqPSD~~~~~~~sI~a~~~~~~~~----Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~~ 108 (204)
T PF06080_consen 34 SGTGQHAVYFAQALPHL-TWQPSDPDDNLRPSIRAWIAEAGLP----NVRPPLALDVSAPPWPWELPAPLSPESFDAIFC 108 (204)
T ss_pred CCccHHHHHHHHHCCCC-EEcCCCCChHHHhhHHHHHHhcCCc----ccCCCeEeecCCCCCccccccccCCCCcceeee
Confidence 7999999999986 333 2357799999999999998876653 11123444443320000 012347888753
Q ss_pred ------CCCCCCHHHHHHHHHhcccCCEEEEEecCCCCCCCCCchhHHhhhccccCCCCCchhhhHHHHHHHHHHHHHhc
Q 019408 77 ------DSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREASAQ 150 (341)
Q Consensus 77 ------DPygsp~~fld~al~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~~~~~~E~~lR~ll~~i~~~Aa~~ 150 (341)
=|+.....++..|-+.|++||+|++--.=. .-|.++-..-.++...-... ..+.|+|.+- .+.+.|.+.
T Consensus 109 ~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~--~~G~~ts~SN~~FD~sLr~r--dp~~GiRD~e-~v~~lA~~~ 183 (204)
T PF06080_consen 109 INMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFN--RDGKFTSESNAAFDASLRSR--DPEWGIRDIE-DVEALAAAH 183 (204)
T ss_pred hhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcc--cCCEeCCcHHHHHHHHHhcC--CCCcCccCHH-HHHHHHHHC
Confidence 354434456677788999999999732100 01444434444444433222 2478999877 689999999
Q ss_pred CCcEEEEEec
Q 019408 151 GYHVSPLFSY 160 (341)
Q Consensus 151 ~~~i~Pl~s~ 160 (341)
|..++-....
T Consensus 184 GL~l~~~~~M 193 (204)
T PF06080_consen 184 GLELEEDIDM 193 (204)
T ss_pred CCccCccccc
Confidence 8876544433
No 258
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=85.54 E-value=1.2 Score=45.15 Aligned_cols=48 Identities=17% Similarity=0.085 Sum_probs=42.1
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEe
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTH 54 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~ 54 (341)
+|||++|+-++.+ ||++|++++.=..-++++++-...|+.. +++++++
T Consensus 75 tGTGLLSmMAvra-gaD~vtA~EvfkPM~d~arkI~~kng~S----dkI~vIn 122 (636)
T KOG1501|consen 75 TGTGLLSMMAVRA-GADSVTACEVFKPMVDLARKIMHKNGMS----DKINVIN 122 (636)
T ss_pred CCccHHHHHHHHh-cCCeEEeehhhchHHHHHHHHHhcCCCc----cceeeec
Confidence 6999999999994 8999999999999999999999989885 5666554
No 259
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=85.34 E-value=33 Score=32.69 Aligned_cols=142 Identities=15% Similarity=0.131 Sum_probs=95.0
Q ss_pred ccccHhHHHHhhh--CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEecc------HHHHHHHhhhcCCcccE
Q 019408 2 CGCGIRSLRYLAE--AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFD------ANRVLSECYLKREFFDL 73 (341)
Q Consensus 2 agsG~rgir~a~e--~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~D------A~~~l~~~~~~~~~fDv 73 (341)
.||+..|-++|++ +.-..|+.+--+.+-++-+.+.++...- .+++++..| +.++..+....+...|+
T Consensus 13 GASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~-----v~v~vi~~DLs~~~~~~~l~~~l~~~~~~Idv 87 (265)
T COG0300 13 GASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTG-----VEVEVIPADLSDPEALERLEDELKERGGPIDV 87 (265)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhC-----ceEEEEECcCCChhHHHHHHHHHHhcCCcccE
Confidence 4788899999886 2235699999999999999999986431 245566665 33444444444457898
Q ss_pred EEeCC-CCCCHHHHH----------------------HHH-Hhcc--cCCEEEEEecCCCCCCCCCchhHHhhhccccCC
Q 019408 74 IDIDS-FGSDSSFLR----------------------TVF-NAVK--RDGLLYLTSTDGYSSGGHRPNNSLASYGAYILP 127 (341)
Q Consensus 74 IdlDP-ygsp~~fld----------------------~al-~~v~--~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~ 127 (341)
.+-.- ||...+|.+ ..+ ..++ .|.+|.|.+. .|..|.....-|+++=
T Consensus 88 LVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~~G~IiNI~S~-----ag~~p~p~~avY~ATK-- 160 (265)
T COG0300 88 LVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERGAGHIINIGSA-----AGLIPTPYMAVYSATK-- 160 (265)
T ss_pred EEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEech-----hhcCCCcchHHHHHHH--
Confidence 88887 887667765 111 1233 4667777655 5666666677777654
Q ss_pred CCCchhhhHHHHHHHHHHHHHhcCCcEEEEEecc
Q 019408 128 MPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYY 161 (341)
Q Consensus 128 ~~~~~E~~lR~ll~~i~~~Aa~~~~~i~Pl~s~~ 161 (341)
..+--|-..+..+-..+|..+.-+..-.
T Consensus 161 ------a~v~~fSeaL~~EL~~~gV~V~~v~PG~ 188 (265)
T COG0300 161 ------AFVLSFSEALREELKGTGVKVTAVCPGP 188 (265)
T ss_pred ------HHHHHHHHHHHHHhcCCCeEEEEEecCc
Confidence 5666677777777777777776665544
No 260
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=85.12 E-value=5.7 Score=38.19 Aligned_cols=88 Identities=17% Similarity=0.155 Sum_probs=56.6
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
+.|...+++|+..|+.+|++.+.+++-.+.+++ .+.+ ..+.....|..+-+.+. ..+..+|+| +|.-|.+
T Consensus 183 ~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~----~ga~----~~i~~~~~~~~~~l~~~-~~~~~~d~v-id~~g~~ 252 (351)
T cd08233 183 PIGLLTILALKAAGASKIIVSEPSEARRELAEE----LGAT----IVLDPTEVDVVAEVRKL-TGGGGVDVS-FDCAGVQ 252 (351)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCC----EEECCCccCHHHHHHHH-hCCCCCCEE-EECCCCH
Confidence 467777888888898889999999988887754 2442 11111223433334333 223348876 5565533
Q ss_pred HHHHHHHHHhcccCCEEEE
Q 019408 83 SSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~v 101 (341)
..++.++++++++|-+..
T Consensus 253 -~~~~~~~~~l~~~G~~v~ 270 (351)
T cd08233 253 -ATLDTAIDALRPRGTAVN 270 (351)
T ss_pred -HHHHHHHHhccCCCEEEE
Confidence 567888999999998775
No 261
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=85.06 E-value=6.2 Score=38.47 Aligned_cols=87 Identities=15% Similarity=0.132 Sum_probs=55.8
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEec--cHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHF--DANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~--DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
+.|...+.+|+..|+.+|++.|.+++-.+.+++ .+.+ ..+..... |..+.+.+... + .+|+| +|.-|
T Consensus 197 ~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~----lGa~----~~i~~~~~~~~~~~~v~~~~~-~-g~d~v-id~~g 265 (368)
T cd08300 197 AVGLAVIQGAKAAGASRIIGIDINPDKFELAKK----FGAT----DCVNPKDHDKPIQQVLVEMTD-G-GVDYT-FECIG 265 (368)
T ss_pred HHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCC----EEEcccccchHHHHHHHHHhC-C-CCcEE-EECCC
Confidence 456667777887898889999999988777654 4442 11111111 34444444322 2 68976 47766
Q ss_pred CCHHHHHHHHHhcccC-CEEEE
Q 019408 81 SDSSFLRTVFNAVKRD-GLLYL 101 (341)
Q Consensus 81 sp~~fld~al~~v~~g-GlL~v 101 (341)
.+ ..++.++++++++ |-+.+
T Consensus 266 ~~-~~~~~a~~~l~~~~G~~v~ 286 (368)
T cd08300 266 NV-KVMRAALEACHKGWGTSVI 286 (368)
T ss_pred Ch-HHHHHHHHhhccCCCeEEE
Confidence 43 5788899999886 87765
No 262
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=84.52 E-value=5.1 Score=38.56 Aligned_cols=78 Identities=19% Similarity=0.200 Sum_probs=52.3
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccE-EEeCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDL-IDIDSFGS 81 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDv-IdlDPygs 81 (341)
+.|...+..|+..|+ +|++.|.+++-.+++++ .|.+ . ++..+ + ...+.+|+ |+.|+-+
T Consensus 176 ~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~----~Ga~-----~--vi~~~--~------~~~~~~d~~i~~~~~~- 234 (329)
T TIGR02822 176 GSAHLTAQVALAQGA-TVHVMTRGAAARRLALA----LGAA-----S--AGGAY--D------TPPEPLDAAILFAPAG- 234 (329)
T ss_pred HHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH----hCCc-----e--ecccc--c------cCcccceEEEECCCcH-
Confidence 456667888887787 48999999888776655 5552 1 22211 0 01235784 5667643
Q ss_pred CHHHHHHHHHhcccCCEEEEEe
Q 019408 82 DSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 82 p~~fld~al~~v~~gGlL~vt~ 103 (341)
..++.+++++++||.+.+..
T Consensus 235 --~~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 235 --GLVPPALEALDRGGVLAVAG 254 (329)
T ss_pred --HHHHHHHHhhCCCcEEEEEe
Confidence 56788999999999998744
No 263
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=83.95 E-value=6.6 Score=39.06 Aligned_cols=90 Identities=13% Similarity=0.146 Sum_probs=57.6
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEe-ccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTH-FDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~-~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
+.|...+.+|+..|+..|++.|.+++-.+++++ .+. +.+.... .|..+.+.+. ..+..+|+| +|.-|.
T Consensus 196 ~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~----~Ga-----~~v~~~~~~~~~~~v~~~-~~~~g~Dvv-id~~G~ 264 (393)
T TIGR02819 196 PVGLAAAASAQLLGAAVVIVGDLNPARLAQARS----FGC-----ETVDLSKDATLPEQIEQI-LGEPEVDCA-VDCVGF 264 (393)
T ss_pred HHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH----cCC-----eEEecCCcccHHHHHHHH-cCCCCCcEE-EECCCC
Confidence 345566777877899888888999888877765 343 1111111 2333333332 223458855 677776
Q ss_pred CH-------------HHHHHHHHhcccCCEEEEEe
Q 019408 82 DS-------------SFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 82 p~-------------~fld~al~~v~~gGlL~vt~ 103 (341)
+. .-++.+++++++||-+++-.
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G 299 (393)
T TIGR02819 265 EARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPG 299 (393)
T ss_pred ccccccccccccchHHHHHHHHHHhhCCCEEEEee
Confidence 52 46889999999999999744
No 264
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=83.82 E-value=7.4 Score=38.42 Aligned_cols=89 Identities=17% Similarity=0.143 Sum_probs=61.0
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEec-cHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHF-DANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~-DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
.|.|+-+|.-|+-.||.+|+++|++++-.++.++ .|.. +-+..... |+-+.+.+... .--|++ +|-=|
T Consensus 195 GgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~----fGAT----~~vn~~~~~~vv~~i~~~T~--gG~d~~-~e~~G 263 (366)
T COG1062 195 GGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKK----FGAT----HFVNPKEVDDVVEAIVELTD--GGADYA-FECVG 263 (366)
T ss_pred cHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHh----cCCc----eeecchhhhhHHHHHHHhcC--CCCCEE-EEccC
Confidence 3556666666776899999999999999999877 5552 11111112 56666665532 246766 56656
Q ss_pred CCHHHHHHHHHhcccCCEEEEE
Q 019408 81 SDSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 81 sp~~fld~al~~v~~gGlL~vt 102 (341)
.. .-+++|+.+..++|-..+.
T Consensus 264 ~~-~~~~~al~~~~~~G~~v~i 284 (366)
T COG1062 264 NV-EVMRQALEATHRGGTSVII 284 (366)
T ss_pred CH-HHHHHHHHHHhcCCeEEEE
Confidence 54 6789999999999988864
No 265
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=83.76 E-value=1.5 Score=44.92 Aligned_cols=83 Identities=12% Similarity=0.067 Sum_probs=59.3
Q ss_pred CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhh---cCCcccEEEeCCCCC--------CH
Q 019408 15 AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYL---KREFFDLIDIDSFGS--------DS 83 (341)
Q Consensus 15 ~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~---~~~~fDvIdlDPygs--------p~ 83 (341)
.+-.++++++++|++++..+.|..+..- .+..|+-.|...++.+..+ .+..||++.+|==++ |.
T Consensus 317 ~p~~~i~~ve~dP~~l~va~q~f~f~q~-----~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl~~dvds~d~~g~~~pp~ 391 (482)
T KOG2352|consen 317 LPKFQITAVEIDPEMLEVATQYFGFMQS-----DRNKVHIADGLDFLQRTAKSQQEDICPDVLMVDVDSKDSHGMQCPPP 391 (482)
T ss_pred cCccceeEEEEChhHhhccHhhhchhhh-----hhhhhhHhhchHHHHHHhhccccccCCcEEEEECCCCCcccCcCCch
Confidence 3556799999999999999999986543 2345677888888887654 456899887763111 45
Q ss_pred HHHH-HHH----HhcccCCEEEEE
Q 019408 84 SFLR-TVF----NAVKRDGLLYLT 102 (341)
Q Consensus 84 ~fld-~al----~~v~~gGlL~vt 102 (341)
.|+. .|+ ..|.+.|+..+-
T Consensus 392 ~fva~~~l~~~k~~l~p~g~f~in 415 (482)
T KOG2352|consen 392 AFVAQVALQPVKMILPPRGMFIIN 415 (482)
T ss_pred HHHHHHHHHHHhhccCccceEEEE
Confidence 6664 333 457889998863
No 266
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=83.68 E-value=7.1 Score=37.91 Aligned_cols=86 Identities=14% Similarity=0.176 Sum_probs=56.9
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEe-c-cHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTH-F-DANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~-~-DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
+.|...+.+|+..|+ +|++.+.+++-.+.+++. .+.+ .+.-.. . |..+.+.+.. +..+|+|+ |.-|
T Consensus 170 ~vG~~aiqlAk~~G~-~Vi~~~~~~~k~~~~~~~---lGa~-----~vi~~~~~~~~~~~i~~~~--~~gvD~v~-d~vG 237 (348)
T PLN03154 170 AVGQLVGQLAKLHGC-YVVGSAGSSQKVDLLKNK---LGFD-----EAFNYKEEPDLDAALKRYF--PEGIDIYF-DNVG 237 (348)
T ss_pred HHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHh---cCCC-----EEEECCCcccHHHHHHHHC--CCCcEEEE-ECCC
Confidence 467777888887787 588899998877776532 3442 221112 2 4444444432 23689775 8877
Q ss_pred CCHHHHHHHHHhcccCCEEEEE
Q 019408 81 SDSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 81 sp~~fld~al~~v~~gGlL~vt 102 (341)
. +.++.++++++++|-+++.
T Consensus 238 ~--~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 238 G--DMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred H--HHHHHHHHHhccCCEEEEE
Confidence 4 5778899999999998863
No 267
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=83.63 E-value=10 Score=39.42 Aligned_cols=92 Identities=10% Similarity=0.057 Sum_probs=55.4
Q ss_pred ccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEE---------------EeccHHHHHHHh-hhc
Q 019408 4 CGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVV---------------THFDANRVLSEC-YLK 67 (341)
Q Consensus 4 sG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v---------------~~~DA~~~l~~~-~~~ 67 (341)
.|..+|..|+..|| .|++.|.+++..+.+++ .|.+ .+.+ ...|..+...+. ...
T Consensus 176 iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aes----lGA~-----~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~ 245 (509)
T PRK09424 176 AGLAAIGAAGSLGA-IVRAFDTRPEVAEQVES----MGAE-----FLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAEQ 245 (509)
T ss_pred HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCCe-----EEEeccccccccccchhhhcchhHHHHHHHHHHhc
Confidence 45666777877898 69999999999998877 3331 1111 111211111111 111
Q ss_pred CCcccEEEeCCC--C--CCHHHHHHHHHhcccCCEEEEEecC
Q 019408 68 REFFDLIDIDSF--G--SDSSFLRTVFNAVKRDGLLYLTSTD 105 (341)
Q Consensus 68 ~~~fDvIdlDPy--g--sp~~fld~al~~v~~gGlL~vt~TD 105 (341)
...+|+|+-=-. + .|.-+.+.+++.+++||.+..-+.|
T Consensus 246 ~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~~ 287 (509)
T PRK09424 246 AKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAAE 287 (509)
T ss_pred cCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEccC
Confidence 135898865442 2 2322349999999999999976665
No 268
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=83.58 E-value=7.3 Score=37.87 Aligned_cols=88 Identities=14% Similarity=0.066 Sum_probs=54.9
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEe--ccHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTH--FDANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~--~DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
+.|...++.|+..|+.+|+++|.+++-.+.+++ .+.. .-+.... .+..+.+.+.. +..+|+ ++|--|
T Consensus 198 ~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~----~Ga~----~~i~~~~~~~~~~~~v~~~~--~~~~d~-vid~~G 266 (369)
T cd08301 198 AVGLAVAEGARIRGASRIIGVDLNPSKFEQAKK----FGVT----EFVNPKDHDKPVQEVIAEMT--GGGVDY-SFECTG 266 (369)
T ss_pred HHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc----eEEcccccchhHHHHHHHHh--CCCCCE-EEECCC
Confidence 456666778887898889999999988777654 4431 1111111 12223343332 226884 467766
Q ss_pred CCHHHHHHHHHhcccC-CEEEEE
Q 019408 81 SDSSFLRTVFNAVKRD-GLLYLT 102 (341)
Q Consensus 81 sp~~fld~al~~v~~g-GlL~vt 102 (341)
.+ ..+..++++++++ |.+++.
T Consensus 267 ~~-~~~~~~~~~~~~~~g~~v~~ 288 (369)
T cd08301 267 NI-DAMISAFECVHDGWGVTVLL 288 (369)
T ss_pred Ch-HHHHHHHHHhhcCCCEEEEE
Confidence 43 5778899999996 888763
No 269
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=83.20 E-value=7.7 Score=37.13 Aligned_cols=87 Identities=15% Similarity=0.206 Sum_probs=56.8
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEe-ccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTH-FDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~-~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
|.|...+.+|+..|+ +|++.+.+++-.+.+++.+ +.+ ..+.... .|..+.+.... +..+|+|+ |..|.
T Consensus 163 ~vG~~aiqlAk~~G~-~Vi~~~~~~~~~~~~~~~l---Ga~----~vi~~~~~~~~~~~i~~~~--~~gvd~v~-d~~g~ 231 (338)
T cd08295 163 AVGQLVGQLAKLKGC-YVVGSAGSDEKVDLLKNKL---GFD----DAFNYKEEPDLDAALKRYF--PNGIDIYF-DNVGG 231 (338)
T ss_pred HHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhc---CCc----eeEEcCCcccHHHHHHHhC--CCCcEEEE-ECCCH
Confidence 456677888887888 4888888888777776533 331 1111111 14444444432 24689775 88775
Q ss_pred CHHHHHHHHHhcccCCEEEEE
Q 019408 82 DSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 82 p~~fld~al~~v~~gGlL~vt 102 (341)
..+..++++++++|.++.-
T Consensus 232 --~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 232 --KMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred --HHHHHHHHHhccCcEEEEe
Confidence 6678899999999998853
No 270
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=82.93 E-value=4.6 Score=38.72 Aligned_cols=73 Identities=16% Similarity=0.133 Sum_probs=55.3
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeC-CCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDID-SFGS 81 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlD-Pygs 81 (341)
|||.+-.+.+- .| ++|+++++||.-+.-+.+=++-...+ ++.+|+.+|.... .--.||.++-. ||.-
T Consensus 68 GTGnLT~~lLe-~~-kkVvA~E~Dprmvael~krv~gtp~~----~kLqV~~gD~lK~------d~P~fd~cVsNlPyqI 135 (315)
T KOG0820|consen 68 GTGNLTVKLLE-AG-KKVVAVEIDPRMVAELEKRVQGTPKS----GKLQVLHGDFLKT------DLPRFDGCVSNLPYQI 135 (315)
T ss_pred CCCHHHHHHHH-hc-CeEEEEecCcHHHHHHHHHhcCCCcc----ceeeEEecccccC------CCcccceeeccCCccc
Confidence 89999999874 44 57999999999999999877654443 6789999998742 11368987775 7876
Q ss_pred CHHHHH
Q 019408 82 DSSFLR 87 (341)
Q Consensus 82 p~~fld 87 (341)
.+|++-
T Consensus 136 SSp~vf 141 (315)
T KOG0820|consen 136 SSPLVF 141 (315)
T ss_pred cCHHHH
Confidence 667753
No 271
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=82.81 E-value=9.2 Score=37.20 Aligned_cols=88 Identities=16% Similarity=0.152 Sum_probs=56.4
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEe-ccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTH-FDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~-~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
+.|...+.+|+..|+..|++.|.+++-.+.+++ .+.. .+...+ .+..+.+.... +..+|+| +|--|.
T Consensus 197 ~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~----~g~~-----~~i~~~~~~~~~~v~~~~--~~~~d~v-ld~~g~ 264 (365)
T cd08278 197 AVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKE----LGAT-----HVINPKEEDLVAAIREIT--GGGVDYA-LDTTGV 264 (365)
T ss_pred HHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCc-----EEecCCCcCHHHHHHHHh--CCCCcEE-EECCCC
Confidence 456677788887899889999999887776654 3331 211111 23333344432 3468966 455443
Q ss_pred CHHHHHHHHHhcccCCEEEEEe
Q 019408 82 DSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 82 p~~fld~al~~v~~gGlL~vt~ 103 (341)
+ ..++.+++.++.+|.+....
T Consensus 265 ~-~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 265 P-AVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred c-HHHHHHHHHhccCCEEEEeC
Confidence 3 66788999999999888644
No 272
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp. (strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.
Probab=82.78 E-value=2.5 Score=32.46 Aligned_cols=55 Identities=16% Similarity=0.315 Sum_probs=42.7
Q ss_pred eehhHHHhhcCCCCCCHHHHHHHHHHCCCEEeeeecCCCceecCCCHHH--HHHHHHh
Q 019408 279 IKLDEMASRAKMNSPSLKTMMSAVQKEGYVASRSHIASNAIKTNCPMVA--CIRIAKE 334 (341)
Q Consensus 279 y~~~~l~~~~k~~~p~~~~~~~~L~~~Gy~as~tH~~~~~iKTdAp~~~--i~~i~~~ 334 (341)
.+..+||..++++.+-..++++.|.++|+-.|..... .|+.=.-|+++ ++||++.
T Consensus 26 ~s~~eiA~~~~i~~~~l~kil~~L~~~Gli~s~~G~~-GGy~L~~~~~~Itl~dI~~a 82 (83)
T PF02082_consen 26 VSSKEIAERLGISPSYLRKILQKLKKAGLIESSRGRG-GGYRLARPPEEITLLDIVRA 82 (83)
T ss_dssp BEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETSTT-SEEEESS-CCGSBHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHhhCCeeEecCCCC-CceeecCCHHHCCHHHHHHh
Confidence 8999999999998888999999999999976665443 47777766666 6777764
No 273
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=82.76 E-value=8.4 Score=36.65 Aligned_cols=88 Identities=13% Similarity=0.027 Sum_probs=55.5
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
+.|...++.|+..|+..|++.+.++...+.+++ ++.. ..+.....+..+.+... ..+..+|+|+ |..+.
T Consensus 178 ~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~----~g~~----~vi~~~~~~~~~~i~~~-~~~~~~d~vl-d~~g~- 246 (347)
T cd05278 178 PVGLCAVAGARLLGAARIIAVDSNPERLDLAKE----AGAT----DIINPKNGDIVEQILEL-TGGRGVDCVI-EAVGF- 246 (347)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH----hCCc----EEEcCCcchHHHHHHHH-cCCCCCcEEE-EccCC-
Confidence 356677888887787678888888877777665 2331 11111223333334332 2235689765 77553
Q ss_pred HHHHHHHHHhcccCCEEEE
Q 019408 83 SSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~v 101 (341)
...++.+++.++++|.+..
T Consensus 247 ~~~~~~~~~~l~~~G~~v~ 265 (347)
T cd05278 247 EETFEQAVKVVRPGGTIAN 265 (347)
T ss_pred HHHHHHHHHHhhcCCEEEE
Confidence 2578889999999998874
No 274
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=82.68 E-value=4.7 Score=36.52 Aligned_cols=139 Identities=14% Similarity=0.116 Sum_probs=78.8
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||.|.+ +.++.+.....++.+|+|++.+....+ +|+ .|+++|+..-|... ....||+|+|-=
T Consensus 22 CGdG~L-L~~L~~~k~v~g~GvEid~~~v~~cv~----rGv--------~Viq~Dld~gL~~f--~d~sFD~VIlsqtLQ 86 (193)
T PF07021_consen 22 CGDGEL-LAYLKDEKQVDGYGVEIDPDNVAACVA----RGV--------SVIQGDLDEGLADF--PDQSFDYVILSQTLQ 86 (193)
T ss_pred CCchHH-HHHHHHhcCCeEEEEecCHHHHHHHHH----cCC--------CEEECCHHHhHhhC--CCCCccEEehHhHHH
Confidence 455655 355554233468999999998665544 555 47899999999765 356899998754
Q ss_pred -CCCCHHHHHHHHHhcccCCEEEEEecCCCC--------CCCCCchhHHhhhccccCCCCCchhhhHHHHHHHHHHHHHh
Q 019408 79 -FGSDSSFLRTVFNAVKRDGLLYLTSTDGYS--------SGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREASA 149 (341)
Q Consensus 79 -ygsp~~fld~al~~v~~gGlL~vt~TD~~~--------l~g~~~~~~~r~Yg~~~~~~~~~~E~~lR~ll~~i~~~Aa~ 149 (341)
--.|...|+.. ++=|.-..||...-+- +-|..|.+..-=|.= ..|+=-|-..++.|.. -+.+
T Consensus 87 ~~~~P~~vL~Em---lRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~W--YdTPNih~~Ti~DFe~----lc~~ 157 (193)
T PF07021_consen 87 AVRRPDEVLEEM---LRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEW--YDTPNIHLCTIKDFED----LCRE 157 (193)
T ss_pred hHhHHHHHHHHH---HHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcc--cCCCCcccccHHHHHH----HHHH
Confidence 11133334443 3445556666654432 246666553322210 1222234556665543 4555
Q ss_pred cCCcEEEEEecccCCCC
Q 019408 150 QGYHVSPLFSYYSYHGP 166 (341)
Q Consensus 150 ~~~~i~Pl~s~~~~~dh 166 (341)
.|..|.=-..+. .++
T Consensus 158 ~~i~I~~~~~~~--~~~ 172 (193)
T PF07021_consen 158 LGIRIEERVFLD--GGR 172 (193)
T ss_pred CCCEEEEEEEEc--CCC
Confidence 666666655555 554
No 275
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=82.63 E-value=8.5 Score=37.61 Aligned_cols=87 Identities=17% Similarity=0.151 Sum_probs=54.0
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEe--ccHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTH--FDANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~--~DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
+.|...+.+|+..|+.+|++.|.+++-.+.+++ .+.. ..+.... .+..+.+.+... + .+|+| +|--|
T Consensus 196 ~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~----~Ga~----~~i~~~~~~~~~~~~v~~~~~-~-g~d~v-id~~G 264 (368)
T TIGR02818 196 GIGLSVIQGARMAKASRIIAIDINPAKFELAKK----LGAT----DCVNPNDYDKPIQEVIVEITD-G-GVDYS-FECIG 264 (368)
T ss_pred HHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCC----eEEcccccchhHHHHHHHHhC-C-CCCEE-EECCC
Confidence 456667778888899889999999998887755 4442 1111111 122233333322 2 58866 46656
Q ss_pred CCHHHHHHHHHhcccC-CEEEE
Q 019408 81 SDSSFLRTVFNAVKRD-GLLYL 101 (341)
Q Consensus 81 sp~~fld~al~~v~~g-GlL~v 101 (341)
.+ ..++.++++++++ |-+.+
T Consensus 265 ~~-~~~~~~~~~~~~~~G~~v~ 285 (368)
T TIGR02818 265 NV-NVMRAALECCHKGWGESII 285 (368)
T ss_pred CH-HHHHHHHHHhhcCCCeEEE
Confidence 44 5677889999886 87664
No 276
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=82.32 E-value=8.2 Score=37.09 Aligned_cols=88 Identities=10% Similarity=0.006 Sum_probs=55.6
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
+.|...+.+|+..|+..|+..|.+++-.+++++ .+.. .-+.....|....+... ..+..+|+| +|.-|.+
T Consensus 177 ~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~----~~v~~~~~~~~~~i~~~-~~~~~~d~v-ld~~g~~ 246 (351)
T cd08285 177 PVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YGAT----DIVDYKNGDVVEQILKL-TGGKGVDAV-IIAGGGQ 246 (351)
T ss_pred HHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCc----eEecCCCCCHHHHHHHH-hCCCCCcEE-EECCCCH
Confidence 356667788887899889999999887777764 3431 11111122333333332 234568965 4665543
Q ss_pred HHHHHHHHHhcccCCEEEE
Q 019408 83 SSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~v 101 (341)
..+..++++++++|.+..
T Consensus 247 -~~~~~~~~~l~~~G~~v~ 264 (351)
T cd08285 247 -DTFEQALKVLKPGGTISN 264 (351)
T ss_pred -HHHHHHHHHhhcCCEEEE
Confidence 567889999999998774
No 277
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=80.93 E-value=3.7 Score=37.87 Aligned_cols=94 Identities=15% Similarity=0.126 Sum_probs=59.7
Q ss_pred ccccHhHHHHhhhCCCCE--EEEeeCCHHHHHHHHHHHHHcCC--CC---CCCccEEEEeccHHHHHHHhhhcCCcccEE
Q 019408 2 CGCGIRSLRYLAEAKADF--VMANDGNDAHRRVILGNLKSIER--GS---GDEKRWVVTHFDANRVLSECYLKREFFDLI 74 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~--V~~~Dis~~A~~~i~~N~~~n~~--~~---~~~~~~~v~~~DA~~~l~~~~~~~~~fDvI 74 (341)
||||.++--++.=-|+.- ++.+|.-++.++.-++|++.--- +. -...+..++.+|....-. ...+||-|
T Consensus 91 sGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~----e~a~YDaI 166 (237)
T KOG1661|consen 91 SGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYA----EQAPYDAI 166 (237)
T ss_pred CCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCC----ccCCcceE
Confidence 688888776663223322 38999999999999999985320 00 001235567888876543 34689999
Q ss_pred EeCCCCCCHHHHHHHHHhcccCCEEEE
Q 019408 75 DIDSFGSDSSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 75 dlDPygsp~~fld~al~~v~~gGlL~v 101 (341)
.+-- .++..-+.-+..|++||-|.|
T Consensus 167 hvGA--aa~~~pq~l~dqL~~gGrlli 191 (237)
T KOG1661|consen 167 HVGA--AASELPQELLDQLKPGGRLLI 191 (237)
T ss_pred EEcc--CccccHHHHHHhhccCCeEEE
Confidence 9974 111333444566788777775
No 278
>PRK04148 hypothetical protein; Provisional
Probab=80.55 E-value=2.6 Score=36.00 Aligned_cols=70 Identities=16% Similarity=-0.047 Sum_probs=41.1
Q ss_pred cccH-hHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEE-eCCCC
Q 019408 3 GCGI-RSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLID-IDSFG 80 (341)
Q Consensus 3 gsG~-rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvId-lDPyg 80 (341)
|+|. .+...+ +.|. .|+++|+|+.+++.+++|. + .++..|.++-=-+.. +.+|+|. +=|
T Consensus 26 GfG~~vA~~L~-~~G~-~ViaIDi~~~aV~~a~~~~----~--------~~v~dDlf~p~~~~y---~~a~liysirp-- 86 (134)
T PRK04148 26 GFYFKVAKKLK-ESGF-DVIVIDINEKAVEKAKKLG----L--------NAFVDDLFNPNLEIY---KNAKLIYSIRP-- 86 (134)
T ss_pred cCCHHHHHHHH-HCCC-EEEEEECCHHHHHHHHHhC----C--------eEEECcCCCCCHHHH---hcCCEEEEeCC--
Confidence 4453 444444 3564 7999999999998887752 2 355666664322221 2578885 456
Q ss_pred CCHHHHHHHHHh
Q 019408 81 SDSSFLRTVFNA 92 (341)
Q Consensus 81 sp~~fld~al~~ 92 (341)
|.+.....+++
T Consensus 87 -p~el~~~~~~l 97 (134)
T PRK04148 87 -PRDLQPFILEL 97 (134)
T ss_pred -CHHHHHHHHHH
Confidence 54444444443
No 279
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=80.49 E-value=9.3 Score=35.99 Aligned_cols=88 Identities=17% Similarity=0.169 Sum_probs=55.0
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
+.|...++.|+..|+. |++.+.+++-.+.+++ .++. ..+.....+....+ .. ..+..+|+| +|.-|.
T Consensus 176 ~vG~~~~~la~~~G~~-V~~~~~s~~~~~~~~~----~g~~----~~~~~~~~~~~~~~-~~-~~~~~~D~v-id~~g~- 242 (338)
T cd08254 176 GLGLNAVQIAKAMGAA-VIAVDIKEEKLELAKE----LGAD----EVLNSLDDSPKDKK-AA-GLGGGFDVI-FDFVGT- 242 (338)
T ss_pred HHHHHHHHHHHHcCCE-EEEEcCCHHHHHHHHH----hCCC----EEEcCCCcCHHHHH-HH-hcCCCceEE-EECCCC-
Confidence 3567778888877765 8999999887777654 3431 11111122333333 22 234568965 566443
Q ss_pred HHHHHHHHHhcccCCEEEEEe
Q 019408 83 SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~vt~ 103 (341)
...++.+++.++++|.+....
T Consensus 243 ~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 243 QPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred HHHHHHHHHHhhcCCEEEEEC
Confidence 267888999999999988643
No 280
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=80.44 E-value=18 Score=30.25 Aligned_cols=71 Identities=10% Similarity=0.074 Sum_probs=45.9
Q ss_pred ccccHhHHHHhhh---CCCCEEEEeeCC--HHHHHHHHHHHHHcCCCCCCCccEEEEecc------HHHHHHHhhhcCCc
Q 019408 2 CGCGIRSLRYLAE---AKADFVMANDGN--DAHRRVILGNLKSIERGSGDEKRWVVTHFD------ANRVLSECYLKREF 70 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~Dis--~~A~~~i~~N~~~n~~~~~~~~~~~v~~~D------A~~~l~~~~~~~~~ 70 (341)
.|||..|...+.. .|+..|+..+.+ .+..+-+...++..+ .++.+++.| ...++.+.......
T Consensus 7 Ga~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (167)
T PF00106_consen 7 GASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG------AKITFIECDLSDPESIRALIEEVIKRFGP 80 (167)
T ss_dssp TTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT------SEEEEEESETTSHHHHHHHHHHHHHHHSS
T ss_pred CCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc------ccccccccccccccccccccccccccccc
Confidence 5788888877664 578899999998 555555555555333 356666655 34445554444457
Q ss_pred ccEEEeCC
Q 019408 71 FDLIDIDS 78 (341)
Q Consensus 71 fDvIdlDP 78 (341)
.|+++.-.
T Consensus 81 ld~li~~a 88 (167)
T PF00106_consen 81 LDILINNA 88 (167)
T ss_dssp ESEEEEEC
T ss_pred cccccccc
Confidence 89887655
No 281
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=80.31 E-value=12 Score=36.37 Aligned_cols=87 Identities=13% Similarity=0.107 Sum_probs=54.2
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEec---cHHHHHHHhhhcCCcccEEEeCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHF---DANRVLSECYLKREFFDLIDIDSF 79 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~---DA~~~l~~~~~~~~~fDvIdlDPy 79 (341)
+.|...++.|+..|+.+|+++|.+++-.+.+++ .+.. .+..... +..+.+.+... ..+|+|+ |.-
T Consensus 195 ~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~----~ga~-----~~i~~~~~~~~~~~~~~~~~~--~g~d~vi-d~~ 262 (365)
T cd08277 195 AVGLSAIMGAKIAGASRIIGVDINEDKFEKAKE----FGAT-----DFINPKDSDKPVSEVIREMTG--GGVDYSF-ECT 262 (365)
T ss_pred HHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCC-----cEeccccccchHHHHHHHHhC--CCCCEEE-ECC
Confidence 345566777887898889999999888777754 3431 1111111 22333333322 3689765 665
Q ss_pred CCCHHHHHHHHHhcccC-CEEEEE
Q 019408 80 GSDSSFLRTVFNAVKRD-GLLYLT 102 (341)
Q Consensus 80 gsp~~fld~al~~v~~g-GlL~vt 102 (341)
|.+ ..++.+++.++++ |-+.+.
T Consensus 263 g~~-~~~~~~~~~l~~~~G~~v~~ 285 (365)
T cd08277 263 GNA-DLMNEALESTKLGWGVSVVV 285 (365)
T ss_pred CCh-HHHHHHHHhcccCCCEEEEE
Confidence 543 6788899999875 777753
No 282
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=79.89 E-value=2.6 Score=39.60 Aligned_cols=92 Identities=20% Similarity=0.169 Sum_probs=52.3
Q ss_pred ccccHhHHHHhhhCCC--CEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHH-HHHhhhcCCcccEEEeC-
Q 019408 2 CGCGIRSLRYLAEAKA--DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRV-LSECYLKREFFDLIDID- 77 (341)
Q Consensus 2 agsG~rgir~a~e~ga--~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~-l~~~~~~~~~fDvIdlD- 77 (341)
||.|....-.+++..- -+|+++|.||.|+++.++|...+. +++.....|.-.- +... -....+|+|.+=
T Consensus 80 CGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e------~~~~afv~Dlt~~~~~~~-~~~~svD~it~IF 152 (264)
T KOG2361|consen 80 CGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE------SRVEAFVWDLTSPSLKEP-PEEGSVDIITLIF 152 (264)
T ss_pred cCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch------hhhcccceeccchhccCC-CCcCccceEEEEE
Confidence 4555556666664222 479999999999999999998653 2333222222110 1111 112357766432
Q ss_pred ------CCCCCHHHHHHHHHhcccCCEEEE
Q 019408 78 ------SFGSDSSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 78 ------Pygsp~~fld~al~~v~~gGlL~v 101 (341)
| ..-..-++...+++|+||.|.+
T Consensus 153 vLSAi~p-ek~~~a~~nl~~llKPGG~llf 181 (264)
T KOG2361|consen 153 VLSAIHP-EKMQSVIKNLRTLLKPGGSLLF 181 (264)
T ss_pred EEeccCh-HHHHHHHHHHHHHhCCCcEEEE
Confidence 2 0001223444578999999997
No 283
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=79.74 E-value=5.1 Score=39.78 Aligned_cols=80 Identities=26% Similarity=0.314 Sum_probs=50.9
Q ss_pred EEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHh-----hhcCCcccEEEeCCC----CC----CH--
Q 019408 19 FVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSEC-----YLKREFFDLIDIDSF----GS----DS-- 83 (341)
Q Consensus 19 ~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~-----~~~~~~fDvIdlDPy----gs----p~-- 83 (341)
.|++||.++.-...+.+-++.... ....+.+.|+-.+=... ..+..+||-|..|=- |+ +.
T Consensus 185 ~vvaND~d~~R~~~L~~q~~~l~~-----~~~~v~~~~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~ 259 (375)
T KOG2198|consen 185 YVVANDVDPKRLNMLVHQLKRLPS-----PNLLVTNHDASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIW 259 (375)
T ss_pred eeEecccCHHHHHHHHHHHhccCC-----cceeeecccceeccccccccCchhhhhhcceeEEecccCCCcccccCchHh
Confidence 899999998888887776665432 23345555554332221 123568999999841 11 10
Q ss_pred -----------------HHHHHHHHhcccCCEEEEEec
Q 019408 84 -----------------SFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 84 -----------------~fld~al~~v~~gGlL~vt~T 104 (341)
..+-+++++|+.||.|.- +|
T Consensus 260 ~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVY-ST 296 (375)
T KOG2198|consen 260 KEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVY-ST 296 (375)
T ss_pred hhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEE-ec
Confidence 122378899999999985 77
No 284
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=78.94 E-value=15 Score=35.68 Aligned_cols=89 Identities=18% Similarity=0.125 Sum_probs=56.7
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEec--cHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHF--DANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~--DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
+.|...+++|+..|+..|++.|.+++-.+.+++ .++. ..+..... |..+.+.+.. ++.+|+|+ |=.|
T Consensus 194 ~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~----~~v~~~~~~~~~~~~l~~~~--~~~~d~vi-d~~g 262 (365)
T cd05279 194 GVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQ----LGAT----ECINPRDQDKPIVEVLTEMT--DGGVDYAF-EVIG 262 (365)
T ss_pred HHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCC----eecccccccchHHHHHHHHh--CCCCcEEE-ECCC
Confidence 345566777887898888999988888777754 3331 11111122 3334444433 34689776 6555
Q ss_pred CCHHHHHHHHHhcc-cCCEEEEEe
Q 019408 81 SDSSFLRTVFNAVK-RDGLLYLTS 103 (341)
Q Consensus 81 sp~~fld~al~~v~-~gGlL~vt~ 103 (341)
.+ ..+..+++.++ ++|.++...
T Consensus 263 ~~-~~~~~~~~~l~~~~G~~v~~g 285 (365)
T cd05279 263 SA-DTLKQALDATRLGGGTSVVVG 285 (365)
T ss_pred CH-HHHHHHHHHhccCCCEEEEEe
Confidence 43 67788999999 999988643
No 285
>PRK07832 short chain dehydrogenase; Provisional
Probab=78.81 E-value=45 Score=30.66 Aligned_cols=37 Identities=5% Similarity=-0.067 Sum_probs=26.0
Q ss_pred ccccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHHH
Q 019408 2 CGCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLKS 39 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~~ 39 (341)
.|||..|...+++ .|+ .|++.+.+++..+.+.+.++.
T Consensus 7 Gas~giG~~la~~la~~G~-~vv~~~r~~~~~~~~~~~~~~ 46 (272)
T PRK07832 7 GAASGIGRATALRLAAQGA-ELFLTDRDADGLAQTVADARA 46 (272)
T ss_pred CCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHh
Confidence 4677777776554 576 488889998877766666553
No 286
>PLN02702 L-idonate 5-dehydrogenase
Probab=78.58 E-value=18 Score=35.00 Aligned_cols=91 Identities=16% Similarity=0.142 Sum_probs=56.4
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEE--EeccHHHHHHHhh-hcCCcccEEEeCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVV--THFDANRVLSECY-LKREFFDLIDIDSF 79 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v--~~~DA~~~l~~~~-~~~~~fDvIdlDPy 79 (341)
+.|...+..|+..|+..|+++|.++...+++++ .+.. ....+ ...+..+.+.... ..+..+|+| +|.-
T Consensus 192 ~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v-id~~ 262 (364)
T PLN02702 192 PIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQ----LGAD----EIVLVSTNIEDVESEVEEIQKAMGGGIDVS-FDCV 262 (364)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCC----EEEecCcccccHHHHHHHHhhhcCCCCCEE-EECC
Confidence 346677888888899889999999877776554 3442 11111 1123333333221 123468865 5665
Q ss_pred CCCHHHHHHHHHhcccCCEEEEEe
Q 019408 80 GSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 gsp~~fld~al~~v~~gGlL~vt~ 103 (341)
|.+ ..++.+++.++++|.+....
T Consensus 263 g~~-~~~~~~~~~l~~~G~~v~~g 285 (364)
T PLN02702 263 GFN-KTMSTALEATRAGGKVCLVG 285 (364)
T ss_pred CCH-HHHHHHHHHHhcCCEEEEEc
Confidence 533 56788999999999987544
No 287
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=78.49 E-value=1.3 Score=41.66 Aligned_cols=91 Identities=22% Similarity=0.275 Sum_probs=56.5
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
+|+| .+.|.+.| --++|++.|+|+.-++++++--...-.. ........|-.+++. -.+..|+|..-=
T Consensus 42 ~G~G-qa~~~iae-~~k~VIatD~s~~mL~~a~k~~~~~y~~----t~~~ms~~~~v~L~g----~e~SVDlI~~Aqa~H 111 (261)
T KOG3010|consen 42 TGNG-QAARGIAE-HYKEVIATDVSEAMLKVAKKHPPVTYCH----TPSTMSSDEMVDLLG----GEESVDLITAAQAVH 111 (261)
T ss_pred cCCC-cchHHHHH-hhhhheeecCCHHHHHHhhcCCCccccc----CCccccccccccccC----CCcceeeehhhhhHH
Confidence 6888 66666665 4688999999999999888743322111 112334444444442 245677775543
Q ss_pred -CCCCHHHHHHHHHhcccCC-EEEEEe
Q 019408 79 -FGSDSSFLRTVFNAVKRDG-LLYLTS 103 (341)
Q Consensus 79 -ygsp~~fld~al~~v~~gG-lL~vt~ 103 (341)
|- -..|...|-+.||+.| ++.|=.
T Consensus 112 WFd-le~fy~~~~rvLRk~Gg~iavW~ 137 (261)
T KOG3010|consen 112 WFD-LERFYKEAYRVLRKDGGLIAVWN 137 (261)
T ss_pred hhc-hHHHHHHHHHHcCCCCCEEEEEE
Confidence 22 2377778888888665 888743
No 288
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=77.96 E-value=13 Score=35.57 Aligned_cols=88 Identities=16% Similarity=0.134 Sum_probs=55.3
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
+.|...+..|+..|++.|++.+.+++-.+.+++ .++. ..+.....+..+.+.+.. .+ .+|+|+ |..|.+
T Consensus 186 ~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~----~~~~~~~~~~~~~~~~~~-~~-~~d~vi-d~~g~~ 254 (350)
T cd08240 186 GLGLMALALLKALGPANIIVVDIDEAKLEAAKA----AGAD----VVVNGSDPDAAKRIIKAA-GG-GVDAVI-DFVNNS 254 (350)
T ss_pred HHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCc----EEecCCCccHHHHHHHHh-CC-CCcEEE-ECCCCH
Confidence 356666777887899889999998887777643 3331 111111122223333332 22 688876 776643
Q ss_pred HHHHHHHHHhcccCCEEEEE
Q 019408 83 SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~vt 102 (341)
..++.++++++.+|.+...
T Consensus 255 -~~~~~~~~~l~~~g~~v~~ 273 (350)
T cd08240 255 -ATASLAFDILAKGGKLVLV 273 (350)
T ss_pred -HHHHHHHHHhhcCCeEEEE
Confidence 6688899999999988753
No 289
>PRK07109 short chain dehydrogenase; Provisional
Probab=77.92 E-value=69 Score=30.91 Aligned_cols=70 Identities=6% Similarity=-0.097 Sum_probs=42.2
Q ss_pred ccccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccH------HHHHHHhhhcCCccc
Q 019408 2 CGCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDA------NRVLSECYLKREFFD 72 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA------~~~l~~~~~~~~~fD 72 (341)
.|||..|...+.+ .|+ +|++.+.+++..+.+.+.++..+. ++.++..|. .+++......-...|
T Consensus 15 Gas~gIG~~la~~la~~G~-~Vvl~~R~~~~l~~~~~~l~~~g~------~~~~v~~Dv~d~~~v~~~~~~~~~~~g~iD 87 (334)
T PRK07109 15 GASAGVGRATARAFARRGA-KVVLLARGEEGLEALAAEIRAAGG------EALAVVADVADAEAVQAAADRAEEELGPID 87 (334)
T ss_pred CCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCC------cEEEEEecCCCHHHHHHHHHHHHHHCCCCC
Confidence 4677777766543 575 588999999888877777764432 344445553 223332222223579
Q ss_pred EEEeCC
Q 019408 73 LIDIDS 78 (341)
Q Consensus 73 vIdlDP 78 (341)
+++...
T Consensus 88 ~lInnA 93 (334)
T PRK07109 88 TWVNNA 93 (334)
T ss_pred EEEECC
Confidence 887654
No 290
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.83 E-value=4.4 Score=36.00 Aligned_cols=96 Identities=20% Similarity=0.177 Sum_probs=54.5
Q ss_pred ccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeC-C-CCC
Q 019408 4 CGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDID-S-FGS 81 (341)
Q Consensus 4 sG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlD-P-ygs 81 (341)
||+-||-.|.....+.|+.-|-|.++++..++-..+|... ...++.+..-+-... .....+..||+|..- - |-+
T Consensus 41 t~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s--~~tsc~vlrw~~~~a--qsq~eq~tFDiIlaADClFfd 116 (201)
T KOG3201|consen 41 TGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMAS--SLTSCCVLRWLIWGA--QSQQEQHTFDIILAADCLFFD 116 (201)
T ss_pred hhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhccccc--ccceehhhHHHHhhh--HHHHhhCcccEEEeccchhHH
Confidence 5666777776556688999999999999998887777331 012332222222211 122334589988643 3 222
Q ss_pred -C-HHHHHHHHHhcccCCEEEEEe
Q 019408 82 -D-SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 82 -p-~~fld~al~~v~~gGlL~vt~ 103 (341)
. ...++..-..|++.|--.+.+
T Consensus 117 E~h~sLvdtIk~lL~p~g~Al~fs 140 (201)
T KOG3201|consen 117 EHHESLVDTIKSLLRPSGRALLFS 140 (201)
T ss_pred HHHHHHHHHHHHHhCcccceeEec
Confidence 0 123333345677777644433
No 291
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=76.94 E-value=15 Score=35.31 Aligned_cols=88 Identities=14% Similarity=0.131 Sum_probs=54.8
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEec-cH---HHHHHHhhhcCCcccEEEeCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHF-DA---NRVLSECYLKREFFDLIDIDS 78 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~-DA---~~~l~~~~~~~~~fDvIdlDP 78 (341)
+.|...+++|+..|+++|++.+.+++-.+.+++ .++. .+...+. +. ...+.+. ..+..+|+| +|.
T Consensus 188 ~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~-----~vi~~~~~~~~~~~~~i~~~-~~~~~~d~v-id~ 256 (361)
T cd08231 188 PLGLYAVAAAKLAGARRVIVIDGSPERLELARE----FGAD-----ATIDIDELPDPQRRAIVRDI-TGGRGADVV-IEA 256 (361)
T ss_pred HHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCC-----eEEcCcccccHHHHHHHHHH-hCCCCCcEE-EEC
Confidence 456667888888888789999998887776643 3431 1111111 11 1123222 224568965 567
Q ss_pred CCCCHHHHHHHHHhcccCCEEEEE
Q 019408 79 FGSDSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 79 ygsp~~fld~al~~v~~gGlL~vt 102 (341)
-|.. ..+..+++.++++|-++..
T Consensus 257 ~g~~-~~~~~~~~~l~~~G~~v~~ 279 (361)
T cd08231 257 SGHP-AAVPEGLELLRRGGTYVLV 279 (361)
T ss_pred CCCh-HHHHHHHHHhccCCEEEEE
Confidence 5542 6678899999999988853
No 292
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.49 E-value=48 Score=29.64 Aligned_cols=69 Identities=10% Similarity=0.072 Sum_probs=40.9
Q ss_pred ccccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHH------HHHHHhhhcCCccc
Q 019408 2 CGCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDAN------RVLSECYLKREFFD 72 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~------~~l~~~~~~~~~fD 72 (341)
.|||..|...++. .|.+ |++.+.++...+.+..+++. + .++.++..|.. +++.+...+....|
T Consensus 12 Gasg~iG~~l~~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~-~------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d 83 (251)
T PRK07231 12 GASSGIGEGIARRFAAEGAR-VVVTDRNEEAAERVAAEILA-G------GRAIAVAADVSDEADVEAAVAAALERFGSVD 83 (251)
T ss_pred CCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHhc-C------CeEEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence 4678888776654 5765 99999999877776666553 1 13444444432 33333222234679
Q ss_pred EEEeCC
Q 019408 73 LIDIDS 78 (341)
Q Consensus 73 vIdlDP 78 (341)
+|+.-.
T Consensus 84 ~vi~~a 89 (251)
T PRK07231 84 ILVNNA 89 (251)
T ss_pred EEEECC
Confidence 876644
No 293
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=76.47 E-value=2.1 Score=39.51 Aligned_cols=32 Identities=22% Similarity=0.106 Sum_probs=23.2
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHH
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVIL 34 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~ 34 (341)
|+|||+.++.... ....|++||+++..+.+.+
T Consensus 28 F~G~g~V~~~~~~--~~~~vi~ND~~~~l~~~~~ 59 (260)
T PF02086_consen 28 FAGGGSVFLNLKQ--PGKRVIINDINPDLINFWK 59 (260)
T ss_dssp T-TTSHHHHCC-----SSEEEEEES-HHHHHHHH
T ss_pred ecchhHHHHHhcc--cccceeeeechHHHHHHHH
Confidence 8999999988865 4578999999998877655
No 294
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=76.42 E-value=14 Score=35.09 Aligned_cols=84 Identities=20% Similarity=0.201 Sum_probs=51.7
Q ss_pred ccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCCH
Q 019408 4 CGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSDS 83 (341)
Q Consensus 4 sG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp~ 83 (341)
.|...++.|+..|+.+|++.+.+++-.+++++ + +.+ .+.-.+.+. +......+..+|+| +|..|..
T Consensus 177 vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~-~---g~~-----~vi~~~~~~---~~~~~~~~~~vd~v-ld~~g~~- 242 (339)
T cd08232 177 IGALVVAAARRAGAAEIVATDLADAPLAVARA-M---GAD-----ETVNLARDP---LAAYAADKGDFDVV-FEASGAP- 242 (339)
T ss_pred HHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH-c---CCC-----EEEcCCchh---hhhhhccCCCccEE-EECCCCH-
Confidence 35667778887788789999999887775543 2 331 111111111 22221222358876 5676532
Q ss_pred HHHHHHHHhcccCCEEEE
Q 019408 84 SFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 84 ~fld~al~~v~~gGlL~v 101 (341)
..++.+++.++++|-++.
T Consensus 243 ~~~~~~~~~L~~~G~~v~ 260 (339)
T cd08232 243 AALASALRVVRPGGTVVQ 260 (339)
T ss_pred HHHHHHHHHHhcCCEEEE
Confidence 567888999999998875
No 295
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=76.34 E-value=18 Score=34.47 Aligned_cols=88 Identities=16% Similarity=0.124 Sum_probs=54.1
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
+.|...++.|+..|++.|+..+.++...+.+++ .+.. ..+.....+..+-+... ..++.+|+| +|..|.
T Consensus 172 ~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~----~g~~----~~v~~~~~~~~~~l~~~-~~~~~~d~v-ld~~g~- 240 (340)
T TIGR00692 172 PIGLMAIAVAKASGAYPVIVSDPNEYRLELAKK----MGAT----YVVNPFKEDVVKEVADL-TDGEGVDVF-LEMSGA- 240 (340)
T ss_pred HHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCc----EEEcccccCHHHHHHHh-cCCCCCCEE-EECCCC-
Confidence 345666777887788778888888877776654 2331 11111233444444433 223468877 555453
Q ss_pred HHHHHHHHHhcccCCEEEE
Q 019408 83 SSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~v 101 (341)
...++.+++.++++|-+..
T Consensus 241 ~~~~~~~~~~l~~~g~~v~ 259 (340)
T TIGR00692 241 PKALEQGLQAVTPGGRVSL 259 (340)
T ss_pred HHHHHHHHHhhcCCCEEEE
Confidence 2567788999999998765
No 296
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=76.33 E-value=22 Score=33.76 Aligned_cols=87 Identities=14% Similarity=0.139 Sum_probs=53.6
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
+.|...+++|+..|+.+|++++.+++..+.+++ .+. ..+.....|..+.+.+. ..++.+|+| +|..+.+
T Consensus 178 ~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~----~g~-----~~~~~~~~~~~~~l~~~-~~~~~~dvv-id~~~~~ 246 (344)
T cd08284 178 PVGLCAVLSAQVLGAARVFAVDPVPERLERAAA----LGA-----EPINFEDAEPVERVREA-TEGRGADVV-LEAVGGA 246 (344)
T ss_pred HHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH----hCC-----eEEecCCcCHHHHHHHH-hCCCCCCEE-EECCCCH
Confidence 345566778887887778888888877766554 332 11111122333333332 234568954 6775542
Q ss_pred HHHHHHHHHhcccCCEEEE
Q 019408 83 SSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~v 101 (341)
..++.+++.++++|.+..
T Consensus 247 -~~~~~~~~~l~~~g~~v~ 264 (344)
T cd08284 247 -AALDLAFDLVRPGGVISS 264 (344)
T ss_pred -HHHHHHHHhcccCCEEEE
Confidence 578889999999998775
No 297
>PRK08339 short chain dehydrogenase; Provisional
Probab=76.30 E-value=57 Score=30.00 Aligned_cols=37 Identities=16% Similarity=0.018 Sum_probs=26.0
Q ss_pred ccccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHHH
Q 019408 2 CGCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLKS 39 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~~ 39 (341)
.|||..|...+.+ .|+ +|+++|.+++..+.+.+.++.
T Consensus 15 Gas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~ 54 (263)
T PRK08339 15 ASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIKS 54 (263)
T ss_pred CCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHh
Confidence 3566677766554 576 589999998887777766653
No 298
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=76.09 E-value=16 Score=34.88 Aligned_cols=90 Identities=19% Similarity=0.205 Sum_probs=55.3
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
+.|...++.|+..|+++|++.+.+++-.+.+++ .+.+ ..+.....+..+.+... ..++.+|+| +|..|.
T Consensus 174 ~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----lg~~----~~~~~~~~~~~~~~~~~-~~~~~~d~v-~d~~g~- 242 (341)
T PRK05396 174 PIGIMAAAVAKHVGARHVVITDVNEYRLELARK----MGAT----RAVNVAKEDLRDVMAEL-GMTEGFDVG-LEMSGA- 242 (341)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----hCCc----EEecCccccHHHHHHHh-cCCCCCCEE-EECCCC-
Confidence 346666778887788788888888876665543 3431 11111122333444333 234568865 666554
Q ss_pred HHHHHHHHHhcccCCEEEEEe
Q 019408 83 SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~vt~ 103 (341)
...+..++++++++|.+....
T Consensus 243 ~~~~~~~~~~l~~~G~~v~~g 263 (341)
T PRK05396 243 PSAFRQMLDNMNHGGRIAMLG 263 (341)
T ss_pred HHHHHHHHHHHhcCCEEEEEe
Confidence 367788899999999988643
No 299
>PRK05650 short chain dehydrogenase; Provisional
Probab=76.05 E-value=56 Score=29.91 Aligned_cols=70 Identities=13% Similarity=-0.010 Sum_probs=42.4
Q ss_pred ccccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHH------HHHHHhhhcCCccc
Q 019408 2 CGCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDAN------RVLSECYLKREFFD 72 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~------~~l~~~~~~~~~fD 72 (341)
.|||..|...+.+ .|+ +|++.|.+++..+.+...++..+ .++.++..|.. +++.........+|
T Consensus 7 GasggIG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id 79 (270)
T PRK05650 7 GAASGLGRAIALRWAREGW-RLALADVNEEGGEETLKLLREAG------GDGFYQRCDVRDYSQLTALAQACEEKWGGID 79 (270)
T ss_pred cCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC------CceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 4778888877665 465 58899999877776666565433 23445555542 33333222234689
Q ss_pred EEEeCC
Q 019408 73 LIDIDS 78 (341)
Q Consensus 73 vIdlDP 78 (341)
+|+.-.
T Consensus 80 ~lI~~a 85 (270)
T PRK05650 80 VIVNNA 85 (270)
T ss_pred EEEECC
Confidence 887754
No 300
>PRK11014 transcriptional repressor NsrR; Provisional
Probab=75.98 E-value=5 Score=34.01 Aligned_cols=57 Identities=14% Similarity=0.280 Sum_probs=45.9
Q ss_pred ceehhHHHhhcCCCCCCHHHHHHHHHHCCCEEeeeecCCCceecCCCHHH--HHHHHHhh
Q 019408 278 YIKLDEMASRAKMNSPSLKTMMSAVQKEGYVASRSHIASNAIKTNCPMVA--CIRIAKEL 335 (341)
Q Consensus 278 yy~~~~l~~~~k~~~p~~~~~~~~L~~~Gy~as~tH~~~~~iKTdAp~~~--i~~i~~~~ 335 (341)
..+..+||..++++.++..+++..|+++|+-.|...... |++..-|.++ ++||++.+
T Consensus 25 ~~s~~~ia~~~~is~~~vrk~l~~L~~~Glv~s~~G~~G-G~~l~~~~~~itl~dI~~ai 83 (141)
T PRK11014 25 MTSISEVTEVYGVSRNHMVKIINQLSRAGYVTAVRGKNG-GIRLGKPASTIRIGDVVREL 83 (141)
T ss_pred ccCHHHHHHHHCcCHHHHHHHHHHHHhCCEEEEecCCCC-CeeecCCHHHCCHHHHHHHH
Confidence 468999999999999999999999999999988877644 7766667665 45666543
No 301
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=75.94 E-value=16 Score=33.29 Aligned_cols=102 Identities=11% Similarity=0.087 Sum_probs=55.6
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHH-------cCCCCCCCccEEEEeccHHHH--HHHhhhcCCccc
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKS-------IERGSGDEKRWVVTHFDANRV--LSECYLKREFFD 72 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~-------n~~~~~~~~~~~v~~~DA~~~--l~~~~~~~~~fD 72 (341)
||.|-.-+-+|.+.++++++.+++.+...+..+++.+. .+.. ..++++.++|..+. ..... ..-|
T Consensus 51 SG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~---~~~v~l~~gdfl~~~~~~~~~---s~Ad 124 (205)
T PF08123_consen 51 SGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKR---PGKVELIHGDFLDPDFVKDIW---SDAD 124 (205)
T ss_dssp -TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB------EEEEECS-TTTHHHHHHHG---HC-S
T ss_pred CCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcc---cccceeeccCccccHhHhhhh---cCCC
Confidence 68888888888888999999999999999888776653 2331 14577788886432 22221 1469
Q ss_pred EEEeCC--CCCC-HHHHHHHHHhcccCCEEEEEecCCCCCCCCC
Q 019408 73 LIDIDS--FGSD-SSFLRTVFNAVKRDGLLYLTSTDGYSSGGHR 113 (341)
Q Consensus 73 vIdlDP--ygsp-~~fld~al~~v~~gGlL~vt~TD~~~l~g~~ 113 (341)
+|++.= |... ...|...+..+++|-.+ ||. ..+|...
T Consensus 125 vVf~Nn~~F~~~l~~~L~~~~~~lk~G~~I-Is~---~~~~~~~ 164 (205)
T PF08123_consen 125 VVFVNNTCFDPDLNLALAELLLELKPGARI-IST---KPFCPRR 164 (205)
T ss_dssp EEEE--TTT-HHHHHHHHHHHTTS-TT-EE-EES---S-SS-TT
T ss_pred EEEEeccccCHHHHHHHHHHHhcCCCCCEE-EEC---CCcCCCC
Confidence 999987 4411 12233445667776665 443 2456543
No 302
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=75.92 E-value=2.9 Score=29.12 Aligned_cols=46 Identities=17% Similarity=0.374 Sum_probs=36.2
Q ss_pred hHHHHHHHhhcccCCCCCCcceehhHHHhhcCCCCCCHHHHHHHHHHCCCEE
Q 019408 258 DLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNSPSLKTMMSAVQKEGYVA 309 (341)
Q Consensus 258 ~~~~ll~~~~~e~~~~~pp~yy~~~~l~~~~k~~~p~~~~~~~~L~~~Gy~a 309 (341)
|..++|+.+.+. + ++ .++.+|++.++++.++...++..|.+.||-.
T Consensus 4 ral~iL~~l~~~---~-~~--~t~~eia~~~gl~~stv~r~L~tL~~~g~v~ 49 (52)
T PF09339_consen 4 RALRILEALAES---G-GP--LTLSEIARALGLPKSTVHRLLQTLVEEGYVE 49 (52)
T ss_dssp HHHHHHHCHHCT---B-SC--EEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHcC---C-CC--CCHHHHHHHHCcCHHHHHHHHHHHHHCcCee
Confidence 466777777643 1 23 5999999999999999999999999999953
No 303
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=75.85 E-value=13 Score=34.93 Aligned_cols=78 Identities=18% Similarity=0.190 Sum_probs=52.5
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
+.|...+++|+..|++ |++.+.+++-.+.+++ .+.. .+.....+ ..++.+|+| +|..|.
T Consensus 166 ~vg~~~~q~a~~~G~~-vi~~~~~~~~~~~~~~----~g~~-----~~~~~~~~---------~~~~~~d~v-id~~g~- 224 (319)
T cd08242 166 KLGLLIAQVLALTGPD-VVLVGRHSEKLALARR----LGVE-----TVLPDEAE---------SEGGGFDVV-VEATGS- 224 (319)
T ss_pred HHHHHHHHHHHHcCCe-EEEEcCCHHHHHHHHH----cCCc-----EEeCcccc---------ccCCCCCEE-EECCCC-
Confidence 4566677778878887 8899999888887776 3442 11111111 123568966 577764
Q ss_pred HHHHHHHHHhcccCCEEEE
Q 019408 83 SSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~v 101 (341)
...++.+++.++++|-+..
T Consensus 225 ~~~~~~~~~~l~~~g~~v~ 243 (319)
T cd08242 225 PSGLELALRLVRPRGTVVL 243 (319)
T ss_pred hHHHHHHHHHhhcCCEEEE
Confidence 3567888999999998875
No 304
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=75.60 E-value=37 Score=33.72 Aligned_cols=133 Identities=13% Similarity=0.045 Sum_probs=77.5
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
|++|...--.+. +|+ +|+++|..+-+ .++..+ .+++....|.+++... ...+|+|+.|==-+
T Consensus 220 AsPGGWT~~L~~-rG~-~V~AVD~g~l~-----~~L~~~-------~~V~h~~~d~fr~~p~----~~~vDwvVcDmve~ 281 (357)
T PRK11760 220 AAPGGWTYQLVR-RGM-FVTAVDNGPMA-----QSLMDT-------GQVEHLRADGFKFRPP----RKNVDWLVCDMVEK 281 (357)
T ss_pred CCCcHHHHHHHH-cCC-EEEEEechhcC-----HhhhCC-------CCEEEEeccCcccCCC----CCCCCEEEEecccC
Confidence 678999877776 788 89999976533 333322 3678889999887542 45799999997444
Q ss_pred CHHHHHHHHHhcccCCEEE-EEecCCCCCCCCCchhHHhhhccccCCCCCchhhhHHHHHHHHHHHHHhcCCc--EEEEE
Q 019408 82 DSSFLRTVFNAVKRDGLLY-LTSTDGYSSGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYH--VSPLF 158 (341)
Q Consensus 82 p~~fld~al~~v~~gGlL~-vt~TD~~~l~g~~~~~~~r~Yg~~~~~~~~~~E~~lR~ll~~i~~~Aa~~~~~--i~Pl~ 158 (341)
|..-++-..+.+..| +-- ...| =+ .|+++.| ..++..+..|..+..++|.. ++-.-
T Consensus 282 P~rva~lm~~Wl~~g-~cr~aIfn------LK-----------lpmk~r~---~~v~~~l~~i~~~l~~~g~~~~~~~kh 340 (357)
T PRK11760 282 PARVAELMAQWLVNG-WCREAIFN------LK-----------LPMKKRY---EEVRQCLELIEEQLDENGINAQIQAKQ 340 (357)
T ss_pred HHHHHHHHHHHHhcC-cccEEEEE------EE-----------cCCCCCH---HHHHHHHHHHHHHHHHcCCccceeeee
Confidence 544443333444333 210 0011 11 1222221 34566777777777777652 23333
Q ss_pred ecccCCCCeEEEEEEEE
Q 019408 159 SYYSYHGPVFRVMLRVH 175 (341)
Q Consensus 159 s~~~~~dhy~Rv~vrv~ 175 (341)
-++ ..+=+.|++++.
T Consensus 341 LyH--dReEiTv~~~~~ 355 (357)
T PRK11760 341 LYH--DREEVTVHLRRL 355 (357)
T ss_pred eec--CCceEEEEEEec
Confidence 344 566677777764
No 305
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=75.29 E-value=3 Score=40.74 Aligned_cols=75 Identities=15% Similarity=0.231 Sum_probs=53.5
Q ss_pred cccHhHHHHhhhCCCC----EEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHH-HHhh--hcCCcccEEE
Q 019408 3 GCGIRSLRYLAEAKAD----FVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVL-SECY--LKREFFDLID 75 (341)
Q Consensus 3 gsG~rgir~a~e~ga~----~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l-~~~~--~~~~~fDvId 75 (341)
|||+-.|..+. |+. .-++.|++...++..++|+..|++. +.+.+++.++.+-+ .... ....-||+..
T Consensus 110 gtgasci~~ll--g~rq~n~~f~~teidd~s~~~a~snV~qn~ls----s~ikvV~~~~~ktll~d~~~~~~e~~ydFcM 183 (419)
T KOG2912|consen 110 GTGASCIYPLL--GARQNNWYFLATEIDDMSFNYAKSNVEQNNLS----SLIKVVKVEPQKTLLMDALKEESEIIYDFCM 183 (419)
T ss_pred cCchhhhHHhh--hchhccceeeeeeccccccchhhccccccccc----cceeeEEecchhhcchhhhccCccceeeEEe
Confidence 78998998886 432 3578899999999999999999885 56666666543332 2221 1234599999
Q ss_pred eCCCCCCHHHHHH
Q 019408 76 IDSFGSDSSFLRT 88 (341)
Q Consensus 76 lDPygsp~~fld~ 88 (341)
..| ||.+.
T Consensus 184 cNP-----PFfe~ 191 (419)
T KOG2912|consen 184 CNP-----PFFEN 191 (419)
T ss_pred cCC-----chhhc
Confidence 999 66654
No 306
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=74.92 E-value=11 Score=36.35 Aligned_cols=80 Identities=11% Similarity=0.135 Sum_probs=50.0
Q ss_pred cccHhHHHHhhh-CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 3 GCGIRSLRYLAE-AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 3 gsG~rgir~a~e-~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
+.|...+.+++. .|+.+|+++|.+++-.+.+++ .+. . ..+ | ++ .+ ...+|+|+ |--|.
T Consensus 174 ~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~------~-~~~--~--~~-~~----~~g~d~vi-D~~G~ 232 (341)
T cd08237 174 NLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE------T-YLI--D--DI-PE----DLAVDHAF-ECVGG 232 (341)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc------e-eeh--h--hh-hh----ccCCcEEE-ECCCC
Confidence 345555666764 467789999999988777764 221 1 111 1 11 11 12488764 76553
Q ss_pred C--HHHHHHHHHhcccCCEEEEEe
Q 019408 82 D--SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 82 p--~~fld~al~~v~~gGlL~vt~ 103 (341)
+ ...++.++++++++|.+.+..
T Consensus 233 ~~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 233 RGSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred CccHHHHHHHHHhCcCCcEEEEEe
Confidence 1 256788999999999998643
No 307
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=74.78 E-value=22 Score=33.88 Aligned_cols=88 Identities=14% Similarity=0.048 Sum_probs=54.9
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
+.|...+++|+..|+.+|++.|.++.-.+++++ .+.+ ..+.....+....+... ..+..+|+|+ |-.|.+
T Consensus 177 ~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~----~~v~~~~~~~~~~i~~~-~~~~~~d~vl-d~~g~~ 246 (345)
T cd08286 177 PVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKK----LGAT----HTVNSAKGDAIEQVLEL-TDGRGVDVVI-EAVGIP 246 (345)
T ss_pred HHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCC----ceeccccccHHHHHHHH-hCCCCCCEEE-ECCCCH
Confidence 456677888888886778889998877776663 3331 11222223333333332 2334689775 654532
Q ss_pred HHHHHHHHHhcccCCEEEE
Q 019408 83 SSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~v 101 (341)
+.++.+++.++++|-+..
T Consensus 247 -~~~~~~~~~l~~~g~~v~ 264 (345)
T cd08286 247 -ATFELCQELVAPGGHIAN 264 (345)
T ss_pred -HHHHHHHHhccCCcEEEE
Confidence 567888899999998874
No 308
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=74.65 E-value=15 Score=34.95 Aligned_cols=80 Identities=24% Similarity=0.207 Sum_probs=57.0
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEE----EeC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLI----DID 77 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvI----dlD 77 (341)
||.|-...+.+. -.++|++.|+|+.-...+++ -|+ +++ |+.++- ..+.+||+| .||
T Consensus 103 AGdG~VT~~l~~--~f~~v~aTE~S~~Mr~rL~~----kg~--------~vl--~~~~w~----~~~~~fDvIscLNvLD 162 (265)
T PF05219_consen 103 AGDGEVTERLAP--LFKEVYATEASPPMRWRLSK----KGF--------TVL--DIDDWQ----QTDFKFDVISCLNVLD 162 (265)
T ss_pred CCCcHHHHHHHh--hcceEEeecCCHHHHHHHHh----CCC--------eEE--ehhhhh----ccCCceEEEeehhhhh
Confidence 788988888875 46789999999766554443 444 233 222322 234689999 678
Q ss_pred CCCCCHHHHHHHHHhcccCCEEEE
Q 019408 78 SFGSDSSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 78 Pygsp~~fld~al~~v~~gGlL~v 101 (341)
==-.|...|...-++++++|.|.+
T Consensus 163 Rc~~P~~LL~~i~~~l~p~G~lil 186 (265)
T PF05219_consen 163 RCDRPLTLLRDIRRALKPNGRLIL 186 (265)
T ss_pred ccCCHHHHHHHHHHHhCCCCEEEE
Confidence 744477889888899999999996
No 309
>PRK11920 rirA iron-responsive transcriptional regulator; Reviewed
Probab=74.40 E-value=6 Score=34.29 Aligned_cols=57 Identities=11% Similarity=0.190 Sum_probs=48.8
Q ss_pred eehhHHHhhcCCCCCCHHHHHHHHHHCCCEEeeeecCCCceecCCCHHH--HHHHHHhhh
Q 019408 279 IKLDEMASRAKMNSPSLKTMMSAVQKEGYVASRSHIASNAIKTNCPMVA--CIRIAKELQ 336 (341)
Q Consensus 279 y~~~~l~~~~k~~~p~~~~~~~~L~~~Gy~as~tH~~~~~iKTdAp~~~--i~~i~~~~~ 336 (341)
.+..+||...+++.+-+.+++..|+++|+-.|.-.-. .|++-.-|+++ ++||++.+-
T Consensus 25 ~s~~eIA~~~~is~~~L~kIl~~L~~aGlv~S~rG~~-GGy~La~~p~eItl~dIi~ave 83 (153)
T PRK11920 25 SRIPEIARAYGVSELFLFKILQPLVEAGLVETVRGRN-GGVRLGRPAADISLFDVVRVTE 83 (153)
T ss_pred CcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecCCC-CCeeecCCHHHCcHHHHHHHHc
Confidence 5899999999998888999999999999988877653 48999998887 578887653
No 310
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=73.55 E-value=24 Score=34.14 Aligned_cols=89 Identities=15% Similarity=0.167 Sum_probs=55.5
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
+.|...++.|+..|+..|+..+.+++-.+.+++ .++. ..+.....+..+-+... ..+..+|+|+ |.-+.+
T Consensus 198 ~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~----~g~~----~v~~~~~~~~~~~l~~~-~~~~~~d~vl-d~vg~~ 267 (367)
T cd08263 198 GVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKE----LGAT----HTVNAAKEDAVAAIREI-TGGRGVDVVV-EALGKP 267 (367)
T ss_pred HHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCc----eEecCCcccHHHHHHHH-hCCCCCCEEE-EeCCCH
Confidence 456777888887888878889988887776643 2331 11111122333333332 2235699876 775543
Q ss_pred HHHHHHHHHhcccCCEEEEE
Q 019408 83 SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~vt 102 (341)
..++.++++++++|-++..
T Consensus 268 -~~~~~~~~~l~~~G~~v~~ 286 (367)
T cd08263 268 -ETFKLALDVVRDGGRAVVV 286 (367)
T ss_pred -HHHHHHHHHHhcCCEEEEE
Confidence 3778899999999988754
No 311
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=73.24 E-value=4.6 Score=33.48 Aligned_cols=40 Identities=25% Similarity=0.723 Sum_probs=23.6
Q ss_pred cCCCCCcccccccccCCCCCC-CCCCCCCCcceeecc---ccccCCC--CHHHHHHHH
Q 019408 191 CNHCGNSQAYSWEELGQMSCP-CSNTIGSSSLVVSGP---LWTGPLH--DATHITKML 242 (341)
Q Consensus 191 C~~C~~~~~~~~~~~~~~~C~-c~~~~~~~~~~~~GP---lW~G~lh--d~~fv~~~l 242 (341)
|+.||..-.+. ...|+ |+ ..+.|- -|+..|. |.+||...+
T Consensus 1 CPvCg~~l~vt-----~l~C~~C~-------t~i~G~F~l~~~~~L~~E~~~Fi~~Fi 46 (113)
T PF09862_consen 1 CPVCGGELVVT-----RLKCPSCG-------TEIEGEFELPWFARLSPEQLEFIKLFI 46 (113)
T ss_pred CCCCCCceEEE-----EEEcCCCC-------CEEEeeeccchhhcCCHHHHHHHHHHH
Confidence 89998775431 23563 43 356664 4666665 357776664
No 312
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=73.04 E-value=28 Score=34.60 Aligned_cols=89 Identities=15% Similarity=0.125 Sum_probs=52.9
Q ss_pred ccHhHHHHhhhC--CCCEEEEeeCCHHHHHHHHHHHHHc----CCCCCCCccEEEEe----ccHHHHHHHhhhcCCcccE
Q 019408 4 CGIRSLRYLAEA--KADFVMANDGNDAHRRVILGNLKSI----ERGSGDEKRWVVTH----FDANRVLSECYLKREFFDL 73 (341)
Q Consensus 4 sG~rgir~a~e~--ga~~V~~~Dis~~A~~~i~~N~~~n----~~~~~~~~~~~v~~----~DA~~~l~~~~~~~~~fDv 73 (341)
.|...+.+|+.. |+.+|++.|.+++-.+.+++..... +. ...++. .|..+.+.+. ..+..||+
T Consensus 188 vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga------~~~~i~~~~~~~~~~~v~~~-t~g~g~D~ 260 (410)
T cd08238 188 MGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGI------ELLYVNPATIDDLHATLMEL-TGGQGFDD 260 (410)
T ss_pred HHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCc------eEEEECCCccccHHHHHHHH-hCCCCCCE
Confidence 455556677764 5578999999999988887742110 21 111221 2344444433 22446897
Q ss_pred EEeCCCCCCHHHHHHHHHhcccCCEEEE
Q 019408 74 IDIDSFGSDSSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 74 IdlDPygsp~~fld~al~~v~~gGlL~v 101 (341)
|+.. -|.+ ..+..++++++++|-+.+
T Consensus 261 vid~-~g~~-~~~~~a~~~l~~~G~~v~ 286 (410)
T cd08238 261 VFVF-VPVP-ELVEEADTLLAPDGCLNF 286 (410)
T ss_pred EEEc-CCCH-HHHHHHHHHhccCCeEEE
Confidence 7653 2333 667889999997775443
No 313
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=72.75 E-value=32 Score=31.79 Aligned_cols=84 Identities=15% Similarity=0.243 Sum_probs=53.8
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
+.|...++.|+..|+. |++.+.+++-.+.+++ .++. .+.....+..+.+... +..+|+|+ |.-|.
T Consensus 154 ~~g~~~~~~a~~~g~~-v~~~~~~~~~~~~~~~----~g~~-----~~~~~~~~~~~~i~~~---~~~~d~vl-~~~~~- 218 (320)
T cd08243 154 SVGLAALKLAKALGAT-VTATTRSPERAALLKE----LGAD-----EVVIDDGAIAEQLRAA---PGGFDKVL-ELVGT- 218 (320)
T ss_pred hHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHh----cCCc-----EEEecCccHHHHHHHh---CCCceEEE-ECCCh-
Confidence 4567778888877865 8888888876666543 3442 2211122333333333 45689876 76554
Q ss_pred HHHHHHHHHhcccCCEEEEE
Q 019408 83 SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~vt 102 (341)
..++.+++.++++|.+...
T Consensus 219 -~~~~~~~~~l~~~g~~v~~ 237 (320)
T cd08243 219 -ATLKDSLRHLRPGGIVCMT 237 (320)
T ss_pred -HHHHHHHHHhccCCEEEEE
Confidence 6788899999999998753
No 314
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=72.69 E-value=5.1 Score=27.87 Aligned_cols=28 Identities=21% Similarity=0.637 Sum_probs=17.5
Q ss_pred eEEEcCCCCC-ccc-ccccccCCCCCC-CCC
Q 019408 187 FISYCNHCGN-SQA-YSWEELGQMSCP-CSN 214 (341)
Q Consensus 187 ~v~~C~~C~~-~~~-~~~~~~~~~~C~-c~~ 214 (341)
|.|.|.+||. |+. ++..+.....|+ |+.
T Consensus 4 Yey~C~~Cg~~fe~~~~~~~~~~~~CP~Cg~ 34 (52)
T TIGR02605 4 YEYRCTACGHRFEVLQKMSDDPLATCPECGG 34 (52)
T ss_pred EEEEeCCCCCEeEEEEecCCCCCCCCCCCCC
Confidence 7789999998 544 233332234684 775
No 315
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=72.42 E-value=24 Score=34.70 Aligned_cols=89 Identities=21% Similarity=0.207 Sum_probs=55.3
Q ss_pred cHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEecc-HHHHHHHhhhcCCcccEEEeCCCCC--
Q 019408 5 GIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFD-ANRVLSECYLKREFFDLIDIDSFGS-- 81 (341)
Q Consensus 5 G~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~D-A~~~l~~~~~~~~~fDvIdlDPygs-- 81 (341)
|...++.|+..|+.+|+++|.+++-.+.+++.. +. ..+.....| ...-+... ..++.+|+| +|--|.
T Consensus 197 G~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~~-----~vi~~~~~~~~~~~l~~~-~~~~~~D~v-ld~vg~~~ 266 (386)
T cd08283 197 GLFAARSAKLLGAERVIAIDRVPERLEMARSHL---GA-----ETINFEEVDDVVEALREL-TGGRGPDVC-IDAVGMEA 266 (386)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---Cc-----EEEcCCcchHHHHHHHHH-cCCCCCCEE-EECCCCcc
Confidence 667788888788877999999998888877642 11 111111222 33333332 223458865 443221
Q ss_pred ------------------CHHHHHHHHHhcccCCEEEEEe
Q 019408 82 ------------------DSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 82 ------------------p~~fld~al~~v~~gGlL~vt~ 103 (341)
+...++.++++++++|-++...
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 267 HGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred cccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 2356788999999999998643
No 316
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=72.32 E-value=7.7 Score=36.36 Aligned_cols=131 Identities=21% Similarity=0.155 Sum_probs=74.2
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEE-EEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWV-VTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~-v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
|.||.+.- +++++||++|+++|..-.-+. .-++ ++ .++. .-+.|++.+-.+.. .+..|+|.+|= |
T Consensus 88 sSTGGFTd-~lLq~gAk~VyavDVG~~Ql~---~kLR-~d------~rV~~~E~tN~r~l~~~~~--~~~~d~~v~DvSF 154 (245)
T COG1189 88 SSTGGFTD-VLLQRGAKHVYAVDVGYGQLH---WKLR-ND------PRVIVLERTNVRYLTPEDF--TEKPDLIVIDVSF 154 (245)
T ss_pred CCCccHHH-HHHHcCCcEEEEEEccCCccC---HhHh-cC------CcEEEEecCChhhCCHHHc--ccCCCeEEEEeeh
Confidence 45788764 556699999999999743222 2222 11 2333 33566655433322 23679999998 8
Q ss_pred CCCHHHHHHHHHhcccCCEEEEEecCCCCCCCCCchhHHhhhc--cccCCCCCchhhhHHHHHHHHHHHHHhcCCcEEEE
Q 019408 80 GSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYG--AYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPL 157 (341)
Q Consensus 80 gsp~~fld~al~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg--~~~~~~~~~~E~~lR~ll~~i~~~Aa~~~~~i~Pl 157 (341)
-|-...+......+++++.+..-- -..-+.....-| ... +.+. ....++..+.+.|..+|..+.=+
T Consensus 155 ISL~~iLp~l~~l~~~~~~~v~Lv-------KPQFEagr~~v~kkGvv-~d~~----~~~~v~~~i~~~~~~~g~~~~gl 222 (245)
T COG1189 155 ISLKLILPALLLLLKDGGDLVLLV-------KPQFEAGREQVGKKGVV-RDPK----LHAEVLSKIENFAKELGFQVKGL 222 (245)
T ss_pred hhHHHHHHHHHHhcCCCceEEEEe-------cchhhhhhhhcCcCcee-cCcc----hHHHHHHHHHHHHhhcCcEEeee
Confidence 776666777778888887776421 111222222222 222 2222 23346677778888776655433
No 317
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=72.11 E-value=23 Score=33.87 Aligned_cols=87 Identities=11% Similarity=0.028 Sum_probs=54.2
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccE-EEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRW-VVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~-~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
+.|...++.|+..|+..|++.|.+++-.+++++ .+.. .+ .....+..+.+.+. ..+..+|+|+ |-.|.
T Consensus 185 ~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~-----~v~~~~~~~~~~~~~~~-~~~~~vdvvl-d~~g~ 253 (350)
T cd08256 185 PLGLGMIGAARLKNPKKLIVLDLKDERLALARK----FGAD-----VVLNPPEVDVVEKIKEL-TGGYGCDIYI-EATGH 253 (350)
T ss_pred HHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHHH----cCCc-----EEecCCCcCHHHHHHHH-hCCCCCCEEE-ECCCC
Confidence 345555777887898889999999887776654 3331 11 11122343444432 2334589664 76553
Q ss_pred CHHHHHHHHHhcccCCEEEE
Q 019408 82 DSSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 82 p~~fld~al~~v~~gGlL~v 101 (341)
+ ..+..++++++.+|.++.
T Consensus 254 ~-~~~~~~~~~l~~~G~~v~ 272 (350)
T cd08256 254 P-SAVEQGLNMIRKLGRFVE 272 (350)
T ss_pred h-HHHHHHHHHhhcCCEEEE
Confidence 2 457788999999998775
No 318
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=72.07 E-value=28 Score=32.51 Aligned_cols=83 Identities=14% Similarity=0.170 Sum_probs=50.8
Q ss_pred ccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccH-HHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 4 CGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDA-NRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 4 sG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA-~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
.|...+..|+..|+. |++.+.+++-.+.+++ .+.+ .+ +...+. ....... .++.+|+|+ |+.|.
T Consensus 159 vg~~~~~~a~~~g~~-v~~~~~~~~~~~~~~~----~g~~-----~~-~~~~~~~~~~~~~~--~~~~~d~vi-~~~~~- 223 (325)
T cd05280 159 VGSIAVAILAKLGYT-VVALTGKEEQADYLKS----LGAS-----EV-LDREDLLDESKKPL--LKARWAGAI-DTVGG- 223 (325)
T ss_pred HHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHh----cCCc-----EE-EcchhHHHHHHHHh--cCCCccEEE-ECCch-
Confidence 455557778777876 8889999877766643 3431 22 111121 1222211 223589765 88775
Q ss_pred HHHHHHHHHhcccCCEEEEE
Q 019408 83 SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~vt 102 (341)
+-++.++++++.+|-++.-
T Consensus 224 -~~~~~~~~~l~~~g~~v~~ 242 (325)
T cd05280 224 -DVLANLLKQTKYGGVVASC 242 (325)
T ss_pred -HHHHHHHHhhcCCCEEEEE
Confidence 5678899999999988753
No 319
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=71.77 E-value=15 Score=35.69 Aligned_cols=77 Identities=16% Similarity=0.128 Sum_probs=55.2
Q ss_pred EEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEE-EeccHHHHHHHhhhcCCcccEEEeC---CCCCCHHHHHHHHHhcc
Q 019408 19 FVMANDGNDAHRRVILGNLKSIERGSGDEKRWVV-THFDANRVLSECYLKREFFDLIDID---SFGSDSSFLRTVFNAVK 94 (341)
Q Consensus 19 ~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v-~~~DA~~~l~~~~~~~~~fDvIdlD---Pygsp~~fld~al~~v~ 94 (341)
+|+.+|-+...+.++..=+..++-. ..++ ....|..+|.. .+.|+|++| ||-.-..|++.+-....
T Consensus 2 ~~iiVDdd~a~~~~l~~iLs~~~~~-----~~~~~~~~eal~~Le~-----~kpDLifldI~mp~~ngiefaeQvr~i~~ 71 (361)
T COG3947 2 RIIIVDDDAAIVKLLSVILSRAGHE-----VRSCSHPVEALDLLEV-----FKPDLIFLDIVMPYMNGIEFAEQVRDIES 71 (361)
T ss_pred cEEEEcchHHHHHHHHHHHHhccch-----hhccCCHHHHHHHHHh-----cCCCEEEEEeecCCccHHHHHHHHHHhhc
Confidence 5789999999998888888877521 1122 23567777654 378999999 56556789988877766
Q ss_pred cCCEEEEEecC
Q 019408 95 RDGLLYLTSTD 105 (341)
Q Consensus 95 ~gGlL~vt~TD 105 (341)
.=-++.+|+.+
T Consensus 72 ~v~iifIssh~ 82 (361)
T COG3947 72 AVPIIFISSHA 82 (361)
T ss_pred cCcEEEEecch
Confidence 66788887753
No 320
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=71.43 E-value=82 Score=28.74 Aligned_cols=70 Identities=13% Similarity=0.002 Sum_probs=39.5
Q ss_pred ccccHhHHHHhh---hCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHH------HHHHHhhhcCCccc
Q 019408 2 CGCGIRSLRYLA---EAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDAN------RVLSECYLKREFFD 72 (341)
Q Consensus 2 agsG~rgir~a~---e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~------~~l~~~~~~~~~fD 72 (341)
.|+|..|...+. +.|++ |+..|.+++..+-+.++++..+. ++.++..|.. +++.+....-...|
T Consensus 17 Ga~~~iG~~ia~~l~~~G~~-vv~~~~~~~~~~~~~~~~~~~~~------~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 89 (265)
T PRK07097 17 GASYGIGFAIAKAYAKAGAT-IVFNDINQELVDKGLAAYRELGI------EAHGYVCDVTDEDGVQAMVSQIEKEVGVID 89 (265)
T ss_pred CCCchHHHHHHHHHHHCCCe-EEEEeCCHHHHHHHHHHHHhcCC------ceEEEEcCCCCHHHHHHHHHHHHHhCCCCC
Confidence 356666655543 35764 78889998888777777764332 3444555542 23333222223578
Q ss_pred EEEeCC
Q 019408 73 LIDIDS 78 (341)
Q Consensus 73 vIdlDP 78 (341)
+|+.-.
T Consensus 90 ~li~~a 95 (265)
T PRK07097 90 ILVNNA 95 (265)
T ss_pred EEEECC
Confidence 886544
No 321
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=71.37 E-value=19 Score=33.77 Aligned_cols=85 Identities=19% Similarity=0.171 Sum_probs=52.6
Q ss_pred ccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCCH
Q 019408 4 CGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSDS 83 (341)
Q Consensus 4 sG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp~ 83 (341)
.|...++.|+..|+ +|++++.++.-.+.+++.+ +.. ..+.....|..+.+.... +..+|+|+ |..|.
T Consensus 158 ig~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~~~---g~~----~~~~~~~~~~~~~v~~~~--~~~~d~vi-~~~g~-- 224 (329)
T cd05288 158 VGSVVGQIAKLLGA-RVVGIAGSDEKCRWLVEEL---GFD----AAINYKTPDLAEALKEAA--PDGIDVYF-DNVGG-- 224 (329)
T ss_pred HHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhhc---CCc----eEEecCChhHHHHHHHhc--cCCceEEE-EcchH--
Confidence 45555777777777 6888888888777766543 221 111111123333233222 24689775 88775
Q ss_pred HHHHHHHHhcccCCEEEE
Q 019408 84 SFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 84 ~fld~al~~v~~gGlL~v 101 (341)
..++.+++.++++|.++.
T Consensus 225 ~~~~~~~~~l~~~G~~v~ 242 (329)
T cd05288 225 EILDAALTLLNKGGRIAL 242 (329)
T ss_pred HHHHHHHHhcCCCceEEE
Confidence 678889999999998774
No 322
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=71.23 E-value=23 Score=33.13 Aligned_cols=87 Identities=14% Similarity=0.052 Sum_probs=49.6
Q ss_pred ccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCCH
Q 019408 4 CGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSDS 83 (341)
Q Consensus 4 sG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp~ 83 (341)
.|...++.|+..|+. |++..-+++-.+.+++ .+.. .-+.....+..+.+.+. ..++.+|+|+ |..|.
T Consensus 152 ig~~~~~~a~~~G~~-v~~~~~~~~~~~~~~~----~g~~----~~~~~~~~~~~~~i~~~-~~~~~~d~v~-d~~g~-- 218 (324)
T cd08292 152 VGKLVAMLAAARGIN-VINLVRRDAGVAELRA----LGIG----PVVSTEQPGWQDKVREA-AGGAPISVAL-DSVGG-- 218 (324)
T ss_pred HHHHHHHHHHHCCCe-EEEEecCHHHHHHHHh----cCCC----EEEcCCCchHHHHHHHH-hCCCCCcEEE-ECCCC--
Confidence 566667778878885 4554444444444443 2431 11111112222333332 2345699886 88775
Q ss_pred HHHHHHHHhcccCCEEEEEe
Q 019408 84 SFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 84 ~fld~al~~v~~gGlL~vt~ 103 (341)
+.+..+++.++.+|-++...
T Consensus 219 ~~~~~~~~~l~~~g~~v~~g 238 (324)
T cd08292 219 KLAGELLSLLGEGGTLVSFG 238 (324)
T ss_pred hhHHHHHHhhcCCcEEEEEe
Confidence 45678899999999888543
No 323
>PRK07102 short chain dehydrogenase; Provisional
Probab=71.03 E-value=56 Score=29.33 Aligned_cols=68 Identities=10% Similarity=-0.005 Sum_probs=42.3
Q ss_pred ccccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHH------HHHhhhcCCccc
Q 019408 2 CGCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRV------LSECYLKREFFD 72 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~------l~~~~~~~~~fD 72 (341)
.|||..|...+++ .|. +|++.|.+++..+.+.+++...+- .+++++..|..+. +.+. ..++|
T Consensus 8 Gas~giG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~~---~~~~d 78 (243)
T PRK07102 8 GATSDIARACARRYAAAGA-RLYLAARDVERLERLADDLRARGA-----VAVSTHELDILDTASHAAFLDSL---PALPD 78 (243)
T ss_pred cCCcHHHHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhcC-----CeEEEEecCCCChHHHHHHHHHH---hhcCC
Confidence 4678888776654 465 699999999877766666654321 2455566665432 2222 23579
Q ss_pred EEEeCC
Q 019408 73 LIDIDS 78 (341)
Q Consensus 73 vIdlDP 78 (341)
+|+.-.
T Consensus 79 ~vv~~a 84 (243)
T PRK07102 79 IVLIAV 84 (243)
T ss_pred EEEECC
Confidence 888644
No 324
>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=70.98 E-value=2.2 Score=40.57 Aligned_cols=86 Identities=13% Similarity=0.044 Sum_probs=49.0
Q ss_pred EEEEeccHHHHHHHhhhcCCcccEEEeCC-CCC----CHHHHHHHHHhcccCCEEEEEecCCCCCCCCCchhHHhhhccc
Q 019408 50 WVVTHFDANRVLSECYLKREFFDLIDIDS-FGS----DSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYGAY 124 (341)
Q Consensus 50 ~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-ygs----p~~fld~al~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~ 124 (341)
-++++.||+.+..+. .+|++.||| |.+ +.-++-..+..=.+--...+ |++.. .+
T Consensus 188 nkv~qeDaN~LikkI-----~~DilYLDpPYN~rqYs~nYhLLe~IA~y~kP~~~gk--~~~~d------~~-------- 246 (330)
T COG3392 188 NKVYQEDANELIKKI-----SGDILYLDPPYNARQYSANYHLLETIARYEKPEPKGK--TGLID------YS-------- 246 (330)
T ss_pred hHHHHhhHHHHHHhc-----CCCEEEeCCCccccccchHHHHHHHHHhcCCcccccc--cCCCC------hh--------
Confidence 357899999998875 689999999 543 11222222222222222222 11111 00
Q ss_pred cCCCCCc-hhhhHHHHHHHHHHHHHhcCCcEEEEEecc
Q 019408 125 ILPMPYS-NEIGLRMLIGGAVREASAQGYHVSPLFSYY 161 (341)
Q Consensus 125 ~~~~~~~-~E~~lR~ll~~i~~~Aa~~~~~i~Pl~s~~ 161 (341)
-.++.|| .+++...|-..|..+-++| .|+|+-
T Consensus 247 ~~KSsfcs~~~a~~af~eLI~d~k~ky-----IlLSYN 279 (330)
T COG3392 247 WQKSSFCSRKQATQAFEELISDAKFKY-----ILLSYN 279 (330)
T ss_pred hhhhhhhHHHHHHHHHHHHHhhcCccE-----EEEecC
Confidence 0123333 5567777888888887887 888887
No 325
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=70.96 E-value=8.2 Score=28.75 Aligned_cols=56 Identities=11% Similarity=0.166 Sum_probs=36.5
Q ss_pred cceehhHHHhhcCCCCCCHHHHHHHHHHCCCEEeee-----ecCCCceecCC--CHHHHHHHHH
Q 019408 277 GYIKLDEMASRAKMNSPSLKTMMSAVQKEGYVASRS-----HIASNAIKTNC--PMVACIRIAK 333 (341)
Q Consensus 277 ~yy~~~~l~~~~k~~~p~~~~~~~~L~~~Gy~as~t-----H~~~~~iKTdA--p~~~i~~i~~ 333 (341)
...+++++.+.+|. ..+.+++.+.|+.+||.+... -+.+-..|.|- +.+.+=|++|
T Consensus 4 i~~~~~~i~~~lG~-~i~~~~i~~~L~~lg~~~~~~~~~~~~v~vP~~R~Di~~~~DliEEiaR 66 (70)
T PF03484_consen 4 ITLSLDKINKLLGI-DISPEEIIKILKRLGFKVEKIDGDTLEVTVPSYRFDIEHEEDLIEEIAR 66 (70)
T ss_dssp EEEEHHHHHHHHTS----HHHHHHHHHHTT-EEEE-CTTEEEEEEETTSTT-SSHHHHHHHHHH
T ss_pred EEecHHHHHHHhCC-CCCHHHHHHHHHHCCCEEEECCCCEEEEEcCCCcCCcCcccHHHHHHHH
Confidence 35788999999998 456899999999999999996 44444556552 2333444444
No 326
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=70.96 E-value=5.4 Score=38.34 Aligned_cols=85 Identities=19% Similarity=0.150 Sum_probs=47.1
Q ss_pred CEEEEeeCCHHHHHHHHHHHH----HcCCC---------C--C-CC----------ccEEEEeccHHHHHHHhhhcCCcc
Q 019408 18 DFVMANDGNDAHRRVILGNLK----SIERG---------S--G-DE----------KRWVVTHFDANRVLSECYLKREFF 71 (341)
Q Consensus 18 ~~V~~~Dis~~A~~~i~~N~~----~n~~~---------~--~-~~----------~~~~v~~~DA~~~l~~~~~~~~~f 71 (341)
-+|++.|||+.+++.+++-+= .-++. . + .+ ..+++.+.|..+ ........|
T Consensus 148 ~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~---~~~~~~~~f 224 (287)
T PRK10611 148 WKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLA---KQWAVPGPF 224 (287)
T ss_pred cEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCC---CCCccCCCc
Confidence 369999999999999888631 00110 0 0 00 112233333321 000012468
Q ss_pred cEEEe-------CCCCCCHHHHHHHHHhcccCCEEEEEecCC
Q 019408 72 DLIDI-------DSFGSDSSFLRTVFNAVKRDGLLYLTSTDG 106 (341)
Q Consensus 72 DvIdl-------DPygsp~~fld~al~~v~~gGlL~vt~TD~ 106 (341)
|+|+. ||-. ....+....++|++||+|.+-.+++
T Consensus 225 D~I~cRNvliyF~~~~-~~~vl~~l~~~L~pgG~L~lG~sEs 265 (287)
T PRK10611 225 DAIFCRNVMIYFDKTT-QERILRRFVPLLKPDGLLFAGHSEN 265 (287)
T ss_pred ceeeHhhHHhcCCHHH-HHHHHHHHHHHhCCCcEEEEeCccc
Confidence 98866 3311 1244566678999999999866554
No 327
>PTZ00357 methyltransferase; Provisional
Probab=70.83 E-value=8.1 Score=41.59 Aligned_cols=92 Identities=13% Similarity=0.074 Sum_probs=58.4
Q ss_pred hHHHHhhhCCCC-EEEEeeCCHHHHHHHHHHHHHcC-CC---CCCCccEEEEeccHHHHHHHhh-------hcCCcccEE
Q 019408 7 RSLRYLAEAKAD-FVMANDGNDAHRRVILGNLKSIE-RG---SGDEKRWVVTHFDANRVLSECY-------LKREFFDLI 74 (341)
Q Consensus 7 rgir~a~e~ga~-~V~~~Dis~~A~~~i~~N~~~n~-~~---~~~~~~~~v~~~DA~~~l~~~~-------~~~~~fDvI 74 (341)
+.|+++++.|.+ +|++++.|+.|+-.+..+.+.+. =. ..-++++++++.|-+.+-.... ..-.++|+|
T Consensus 717 raLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIV 796 (1072)
T PTZ00357 717 ECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENGSLTLPADFGLCDLI 796 (1072)
T ss_pred HHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccccccccccccccccee
Confidence 578888887764 69999999887666666543211 10 0002568999999887732100 001268999
Q ss_pred E---eCCCCC----CHHHHHHHHHhccc----CCEE
Q 019408 75 D---IDSFGS----DSSFLRTVFNAVKR----DGLL 99 (341)
Q Consensus 75 d---lDPygs----p~~fld~al~~v~~----gGlL 99 (341)
+ |-.||. | +=||.+-+.||+ +|++
T Consensus 797 VSELLGSFGDNELSP-ECLDGaQrfLKdiqhsdGIl 831 (1072)
T PTZ00357 797 VSELLGSLGDNELSP-ECLEAFHAQLEDIQLSRGIA 831 (1072)
T ss_pred hHhhhcccccccCCH-HHHHHHHHhhhhhccccccc
Confidence 6 455774 3 557887778876 7874
No 328
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=70.73 E-value=34 Score=32.47 Aligned_cols=91 Identities=9% Similarity=0.041 Sum_probs=55.2
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
+.|...+++|+..|++.+++.+.+++..+++++ .+.+ ..+.....+..+.+... ..+..+|+|+ |-.|++
T Consensus 179 ~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~ga~----~v~~~~~~~~~~~i~~~-~~~~~~d~il-~~~g~~ 248 (345)
T cd08287 179 AVGLCAVLAAKRLGAERIIAMSRHEDRQALARE----FGAT----DIVAERGEEAVARVREL-TGGVGADAVL-ECVGTQ 248 (345)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCc----eEecCCcccHHHHHHHh-cCCCCCCEEE-ECCCCH
Confidence 345666777887898889999999876666554 3331 11111111222323332 2234588775 655543
Q ss_pred HHHHHHHHHhcccCCEEEEEec
Q 019408 83 SSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~vt~T 104 (341)
..++.+++.++.+|.+....+
T Consensus 249 -~~~~~~~~~l~~~g~~v~~g~ 269 (345)
T cd08287 249 -ESMEQAIAIARPGGRVGYVGV 269 (345)
T ss_pred -HHHHHHHHhhccCCEEEEecc
Confidence 577889999999999886443
No 329
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=70.49 E-value=18 Score=34.39 Aligned_cols=78 Identities=14% Similarity=0.042 Sum_probs=55.2
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeC-CCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDID-SFG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlD-Pyg 80 (341)
.|.|.+-.+.+. ++ .+|+++++|+.-++.+++-+.. . ++.+++++||.++=.... ..++.|+-. ||.
T Consensus 39 pG~GaLT~~Ll~-~~-~~v~aiEiD~~l~~~L~~~~~~--~-----~n~~vi~~DaLk~d~~~l---~~~~~vVaNlPY~ 106 (259)
T COG0030 39 PGLGALTEPLLE-RA-ARVTAIEIDRRLAEVLKERFAP--Y-----DNLTVINGDALKFDFPSL---AQPYKVVANLPYN 106 (259)
T ss_pred CCCCHHHHHHHh-hc-CeEEEEEeCHHHHHHHHHhccc--c-----cceEEEeCchhcCcchhh---cCCCEEEEcCCCc
Confidence 488888888876 44 5699999999999999997751 1 468899999986521100 045666666 686
Q ss_pred CCHHHHHHHHH
Q 019408 81 SDSSFLRTVFN 91 (341)
Q Consensus 81 sp~~fld~al~ 91 (341)
=.+|++-..+.
T Consensus 107 Isspii~kll~ 117 (259)
T COG0030 107 ISSPILFKLLE 117 (259)
T ss_pred ccHHHHHHHHh
Confidence 66687665443
No 330
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=70.49 E-value=31 Score=33.58 Aligned_cols=88 Identities=13% Similarity=0.023 Sum_probs=54.2
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
+.|...++.|+..|+.+|+++|.+++..+++++ .+. ..+.....+..+.+.... +..+|+| +|..|.+
T Consensus 187 ~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~----~g~-----~~v~~~~~~~~~~i~~~~--~~~~d~v-~d~~g~~ 254 (375)
T cd08282 187 PVGLMAAYSAILRGASRVYVVDHVPERLDLAES----IGA-----IPIDFSDGDPVEQILGLE--PGGVDRA-VDCVGYE 254 (375)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCC-----eEeccCcccHHHHHHHhh--CCCCCEE-EECCCCc
Confidence 456667778887888888889999988877764 232 111111223333333332 2357855 6665543
Q ss_pred H----------HHHHHHHHhcccCCEEEEE
Q 019408 83 S----------SFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 83 ~----------~fld~al~~v~~gGlL~vt 102 (341)
. ..++.+++.++++|.+.++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 284 (375)
T cd08282 255 ARDRGGEAQPNLVLNQLIRVTRPGGGIGIV 284 (375)
T ss_pred ccccccccchHHHHHHHHHHhhcCcEEEEE
Confidence 1 3477889999999998653
No 331
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=70.28 E-value=24 Score=36.46 Aligned_cols=75 Identities=21% Similarity=0.154 Sum_probs=51.1
Q ss_pred ccccHhHHHHhhhCC----CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHh-hhcCCcccEEEe
Q 019408 2 CGCGIRSLRYLAEAK----ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSEC-YLKREFFDLIDI 76 (341)
Q Consensus 2 agsG~rgir~a~e~g----a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~-~~~~~~fDvIdl 76 (341)
||||.+=+.++...+ -...+..|+++....+.+.|+-+++++ ....+.++|...-.... .....+||+|+.
T Consensus 195 cGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~----~~~~i~~~dtl~~~~~~~~~~~~~~D~via 270 (489)
T COG0286 195 CGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIE----GDANIRHGDTLSNPKHDDKDDKGKFDFVIA 270 (489)
T ss_pred CchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCC----ccccccccccccCCcccccCCccceeEEEe
Confidence 799988777766422 134789999999999999999999884 12344555554322111 113457999999
Q ss_pred CC-CC
Q 019408 77 DS-FG 80 (341)
Q Consensus 77 DP-yg 80 (341)
-| |+
T Consensus 271 NPPf~ 275 (489)
T COG0286 271 NPPFS 275 (489)
T ss_pred CCCCC
Confidence 98 64
No 332
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=70.22 E-value=28 Score=33.18 Aligned_cols=87 Identities=20% Similarity=0.190 Sum_probs=54.1
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEecc----HHHHHHHhhhcCCcccEEEeCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFD----ANRVLSECYLKREFFDLIDIDS 78 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~D----A~~~l~~~~~~~~~fDvIdlDP 78 (341)
+.|...++.|+..|+..|++.+.+++-.+.+++ + +.. ..+.....+ +..+.. . ..++.+|+| +|.
T Consensus 173 ~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~-~---g~~----~vi~~~~~~~~~~~~~~~~-~-~~~~~~d~v-ld~ 241 (343)
T cd05285 173 PIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKE-L---GAT----HTVNVRTEDTPESAEKIAE-L-LGGKGPDVV-IEC 241 (343)
T ss_pred HHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH-c---CCc----EEeccccccchhHHHHHHH-H-hCCCCCCEE-EEC
Confidence 446777888887888778899888877776644 2 331 111111122 233332 2 234568965 567
Q ss_pred CCCCHHHHHHHHHhcccCCEEEE
Q 019408 79 FGSDSSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 79 ygsp~~fld~al~~v~~gGlL~v 101 (341)
.|+. +.+..+++.++++|-++.
T Consensus 242 ~g~~-~~~~~~~~~l~~~G~~v~ 263 (343)
T cd05285 242 TGAE-SCIQTAIYATRPGGTVVL 263 (343)
T ss_pred CCCH-HHHHHHHHHhhcCCEEEE
Confidence 6642 478889999999998774
No 333
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=69.94 E-value=28 Score=32.82 Aligned_cols=88 Identities=13% Similarity=0.090 Sum_probs=53.6
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
+.|...++.|+..|+..|++.+.+++..+.+++ .+. . .++..+-..........++.+|+|+ |..|+
T Consensus 170 ~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----~g~-----~--~~~~~~~~~~~~~~~~~~~~vd~v~-~~~~~- 236 (334)
T cd08234 170 PIGLLLAQLLKLNGASRVTVAEPNEEKLELAKK----LGA-----T--ETVDPSREDPEAQKEDNPYGFDVVI-EATGV- 236 (334)
T ss_pred HHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCC-----e--EEecCCCCCHHHHHHhcCCCCcEEE-ECCCC-
Confidence 346677788887787778889999887777644 233 1 1121111111110112345689875 56543
Q ss_pred HHHHHHHHHhcccCCEEEEEe
Q 019408 83 SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~vt~ 103 (341)
...+..+++.++++|.++...
T Consensus 237 ~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 237 PKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred hHHHHHHHHHHhcCCEEEEEe
Confidence 267888899999999987643
No 334
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=69.91 E-value=85 Score=28.31 Aligned_cols=69 Identities=14% Similarity=0.111 Sum_probs=40.9
Q ss_pred ccccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEecc------HHHHHHHhhhcCCccc
Q 019408 2 CGCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFD------ANRVLSECYLKREFFD 72 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~D------A~~~l~~~~~~~~~fD 72 (341)
.|+|..|-..+++ .|+ +|++.|.+++..+.+.+.++..+. ++.++..| ..+++......-.+.|
T Consensus 18 Gas~~IG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~------~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 90 (256)
T PRK06124 18 GSARGLGFEIARALAGAGA-HVLVNGRNAATLEAAVAALRAAGG------AAEALAFDIADEEAVAAAFARIDAEHGRLD 90 (256)
T ss_pred CCCchHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcCC------ceEEEEccCCCHHHHHHHHHHHHHhcCCCC
Confidence 3566667665543 576 699999998877777666654432 34444544 3344444333223578
Q ss_pred EEEeC
Q 019408 73 LIDID 77 (341)
Q Consensus 73 vIdlD 77 (341)
+|+.-
T Consensus 91 ~vi~~ 95 (256)
T PRK06124 91 ILVNN 95 (256)
T ss_pred EEEEC
Confidence 88754
No 335
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=69.86 E-value=3.9 Score=29.77 Aligned_cols=48 Identities=21% Similarity=0.439 Sum_probs=35.9
Q ss_pred HHHHHHHhhcccCCCCCCcceehhHHHhhcCCCCCCHHHHHHHHHHCCCEE
Q 019408 259 LEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNSPSLKTMMSAVQKEGYVA 309 (341)
Q Consensus 259 ~~~ll~~~~~e~~~~~pp~yy~~~~l~~~~k~~~p~~~~~~~~L~~~Gy~a 309 (341)
.+..|+.|.+-.+.+ ...+..+||+.++++.|+..+++..|.+.||-.
T Consensus 6 ~e~YL~~Iy~l~~~~---~~v~~~~iA~~L~vs~~tvt~ml~~L~~~GlV~ 53 (60)
T PF01325_consen 6 EEDYLKAIYELSEEG---GPVRTKDIAERLGVSPPTVTEMLKRLAEKGLVE 53 (60)
T ss_dssp HHHHHHHHHHHHHCT---SSBBHHHHHHHHTS-HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHcCC---CCccHHHHHHHHCCChHHHHHHHHHHHHCCCEE
Confidence 566777664311112 237899999999999999999999999999964
No 336
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=69.82 E-value=5.2 Score=36.92 Aligned_cols=90 Identities=18% Similarity=0.091 Sum_probs=55.3
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---C
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS---F 79 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP---y 79 (341)
|.|-..=..++ .-.++|-++|-++.-++.+++.+...+- ...++++.-..++--. ..+||+|-+== |
T Consensus 65 GIGRVTk~lLl-~~f~~VDlVEp~~~Fl~~a~~~l~~~~~-----~v~~~~~~gLQ~f~P~----~~~YDlIW~QW~lgh 134 (218)
T PF05891_consen 65 GIGRVTKGLLL-PVFDEVDLVEPVEKFLEQAKEYLGKDNP-----RVGEFYCVGLQDFTPE----EGKYDLIWIQWCLGH 134 (218)
T ss_dssp TTTHHHHHTCC-CC-SEEEEEES-HHHHHHHHHHTCCGGC-----CEEEEEES-GGG--------TT-EEEEEEES-GGG
T ss_pred ccchhHHHHHH-HhcCEeEEeccCHHHHHHHHHHhcccCC-----CcceEEecCHhhccCC----CCcEeEEEehHhhcc
Confidence 44444434444 3478999999999999999987664221 2345666665554322 35899995532 2
Q ss_pred CC---CHHHHHHHHHhcccCCEEEEE
Q 019408 80 GS---DSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 80 gs---p~~fld~al~~v~~gGlL~vt 102 (341)
-+ -..|+..+-++|+++|+|+|-
T Consensus 135 LTD~dlv~fL~RCk~~L~~~G~IvvK 160 (218)
T PF05891_consen 135 LTDEDLVAFLKRCKQALKPNGVIVVK 160 (218)
T ss_dssp S-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhCcCCcEEEEE
Confidence 21 247788999999999999974
No 337
>PRK07454 short chain dehydrogenase; Provisional
Probab=69.46 E-value=83 Score=28.05 Aligned_cols=70 Identities=9% Similarity=-0.071 Sum_probs=40.2
Q ss_pred ccccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHH------HHHHhhhcCCccc
Q 019408 2 CGCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANR------VLSECYLKREFFD 72 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~------~l~~~~~~~~~fD 72 (341)
.|||..|...+.+ .|. +|++.+.+++..+.+.+-++..+ .++.++..|+.+ ++..........|
T Consensus 13 G~sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 85 (241)
T PRK07454 13 GASSGIGKATALAFAKAGW-DLALVARSQDALEALAAELRSTG------VKAAAYSIDLSNPEAIAPGIAELLEQFGCPD 85 (241)
T ss_pred CCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhCC------CcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 4667777666554 566 79999999877766655554322 234455665432 2332222223479
Q ss_pred EEEeCC
Q 019408 73 LIDIDS 78 (341)
Q Consensus 73 vIdlDP 78 (341)
+|+.-.
T Consensus 86 ~lv~~a 91 (241)
T PRK07454 86 VLINNA 91 (241)
T ss_pred EEEECC
Confidence 887655
No 338
>PRK10458 DNA cytosine methylase; Provisional
Probab=69.24 E-value=6.2 Score=40.56 Aligned_cols=36 Identities=19% Similarity=0.175 Sum_probs=29.3
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHH
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNL 37 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~ 37 (341)
|||.|.+++=+-. .|.+.|.++|+++.|+++.+.|.
T Consensus 95 FsGiGGl~lGfe~-aG~~~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 95 FAGIGGIRRGFEA-IGGQCVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred CcCccHHHHHHHH-cCCEEEEEEechHHHHHHHHHHc
Confidence 7888865544432 68888999999999999999996
No 339
>PRK10857 DNA-binding transcriptional regulator IscR; Provisional
Probab=69.23 E-value=8.8 Score=33.73 Aligned_cols=56 Identities=14% Similarity=0.212 Sum_probs=47.9
Q ss_pred eehhHHHhhcCCCCCCHHHHHHHHHHCCCEEeeeecCCCceecCCCHHH--HHHHHHhh
Q 019408 279 IKLDEMASRAKMNSPSLKTMMSAVQKEGYVASRSHIASNAIKTNCPMVA--CIRIAKEL 335 (341)
Q Consensus 279 y~~~~l~~~~k~~~p~~~~~~~~L~~~Gy~as~tH~~~~~iKTdAp~~~--i~~i~~~~ 335 (341)
.++.+||..++++.+-+.+++..|+++|+-.|..--.. |++=.-|+++ ++||++.+
T Consensus 26 vs~~eIA~~~~ip~~~l~kIl~~L~~aGLv~s~rG~~G-Gy~Lar~p~~Itl~dIl~ai 83 (164)
T PRK10857 26 VPLADISERQGISLSYLEQLFSRLRKNGLVSSVRGPGG-GYLLGKDASSIAVGEVISAV 83 (164)
T ss_pred CcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCCCCCC-CeeccCCHHHCCHHHHHHHH
Confidence 79999999999988889999999999999998555544 8998888887 57777755
No 340
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=68.97 E-value=39 Score=31.67 Aligned_cols=85 Identities=12% Similarity=0.129 Sum_probs=51.6
Q ss_pred ccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCCH
Q 019408 4 CGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSDS 83 (341)
Q Consensus 4 sG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp~ 83 (341)
.|...++.|+..|+ +|++.+.+++-.+.+++ .+.. .+-....+..+.+... .+..+|+|+ |..|.
T Consensus 159 vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~----~g~~-----~v~~~~~~~~~~~~~~--~~~~~d~vl-d~~g~-- 223 (326)
T cd08289 159 VGSLAVSILAKLGY-EVVASTGKADAADYLKK----LGAK-----EVIPREELQEESIKPL--EKQRWAGAV-DPVGG-- 223 (326)
T ss_pred HHHHHHHHHHHCCC-eEEEEecCHHHHHHHHH----cCCC-----EEEcchhHHHHHHHhh--ccCCcCEEE-ECCcH--
Confidence 45555677777787 48888888887666643 3431 2111111111222222 234589764 88775
Q ss_pred HHHHHHHHhcccCCEEEEEe
Q 019408 84 SFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 84 ~fld~al~~v~~gGlL~vt~ 103 (341)
.-++.++++++++|-+..-.
T Consensus 224 ~~~~~~~~~l~~~G~~i~~g 243 (326)
T cd08289 224 KTLAYLLSTLQYGGSVAVSG 243 (326)
T ss_pred HHHHHHHHHhhcCCEEEEEe
Confidence 56778899999999887543
No 341
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=68.96 E-value=4.6 Score=37.88 Aligned_cols=80 Identities=18% Similarity=0.044 Sum_probs=54.4
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeC-CCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDID-SFG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlD-Pyg 80 (341)
+|+|++.-..+. .+ ++|+++|+++..++.+++....+ .+++++++|+.++-....... ....|+-- ||.
T Consensus 39 pG~G~lT~~L~~-~~-~~v~~vE~d~~~~~~L~~~~~~~-------~~~~vi~~D~l~~~~~~~~~~-~~~~vv~NlPy~ 108 (262)
T PF00398_consen 39 PGPGALTRELLK-RG-KRVIAVEIDPDLAKHLKERFASN-------PNVEVINGDFLKWDLYDLLKN-QPLLVVGNLPYN 108 (262)
T ss_dssp STTSCCHHHHHH-HS-SEEEEEESSHHHHHHHHHHCTTC-------SSEEEEES-TTTSCGGGHCSS-SEEEEEEEETGT
T ss_pred CCCccchhhHhc-cc-CcceeecCcHhHHHHHHHHhhhc-------ccceeeecchhccccHHhhcC-CceEEEEEeccc
Confidence 689999998877 46 89999999999999999977622 468999999986422110011 12233333 676
Q ss_pred CCHHHHHHHHH
Q 019408 81 SDSSFLRTVFN 91 (341)
Q Consensus 81 sp~~fld~al~ 91 (341)
-.++++...+.
T Consensus 109 is~~il~~ll~ 119 (262)
T PF00398_consen 109 ISSPILRKLLE 119 (262)
T ss_dssp GHHHHHHHHHH
T ss_pred chHHHHHHHhh
Confidence 55677777766
No 342
>PRK10083 putative oxidoreductase; Provisional
Probab=68.93 E-value=29 Score=32.89 Aligned_cols=88 Identities=14% Similarity=0.018 Sum_probs=53.4
Q ss_pred cccHhHHHHhhh-CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 3 GCGIRSLRYLAE-AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 3 gsG~rgir~a~e-~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
+.|...++.|+. .|+..|+++|.+++..+++++ .+.+ ..+.....+..+.+. ..+..+| +++|--|.
T Consensus 171 ~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~----~Ga~----~~i~~~~~~~~~~~~---~~g~~~d-~vid~~g~ 238 (339)
T PRK10083 171 PVGLTIVQVLKGVYNVKAVIVADRIDERLALAKE----SGAD----WVINNAQEPLGEALE---EKGIKPT-LIIDAACH 238 (339)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHH----hCCc----EEecCccccHHHHHh---cCCCCCC-EEEECCCC
Confidence 455666777775 599889999999988888765 3432 111111122223222 1222234 56777664
Q ss_pred CHHHHHHHHHhcccCCEEEEEe
Q 019408 82 DSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 82 p~~fld~al~~v~~gGlL~vt~ 103 (341)
+ .-+..++++++++|-++.-.
T Consensus 239 ~-~~~~~~~~~l~~~G~~v~~g 259 (339)
T PRK10083 239 P-SILEEAVTLASPAARIVLMG 259 (339)
T ss_pred H-HHHHHHHHHhhcCCEEEEEc
Confidence 3 45677899999999988643
No 343
>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system.
Probab=68.72 E-value=11 Score=31.75 Aligned_cols=56 Identities=16% Similarity=0.299 Sum_probs=46.0
Q ss_pred eehhHHHhhcCCCCCCHHHHHHHHHHCCCEEeeeecCCCceecCCCHHH--HHHHHHhh
Q 019408 279 IKLDEMASRAKMNSPSLKTMMSAVQKEGYVASRSHIASNAIKTNCPMVA--CIRIAKEL 335 (341)
Q Consensus 279 y~~~~l~~~~k~~~p~~~~~~~~L~~~Gy~as~tH~~~~~iKTdAp~~~--i~~i~~~~ 335 (341)
.+..+||..++++.+-..+++..|+++|+-.|..- ...|++-.-|+++ +.||++.+
T Consensus 26 ~s~~~ia~~~~ip~~~l~kil~~L~~~glv~s~~G-~~Ggy~l~~~~~~Itl~dv~~a~ 83 (135)
T TIGR02010 26 VTLADISERQGISLSYLEQLFAKLRKAGLVKSVRG-PGGGYQLGRPAEDISVADIIDAV 83 (135)
T ss_pred CcHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEeC-CCCCEeccCCHHHCcHHHHHHHh
Confidence 79999999999988888999999999999887443 3448888888876 46777655
No 344
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=68.55 E-value=4.9 Score=36.85 Aligned_cols=84 Identities=14% Similarity=-0.005 Sum_probs=58.8
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
+|+|..+++.++..---+++..|. |..++.+++ . +++++..+|.++ . -+. +|+|++==
T Consensus 109 GG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~------~-----~rv~~~~gd~f~---~---~P~-~D~~~l~~vLh 169 (241)
T PF00891_consen 109 GGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE------A-----DRVEFVPGDFFD---P---LPV-ADVYLLRHVLH 169 (241)
T ss_dssp -TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH------T-----TTEEEEES-TTT---C---CSS-ESEEEEESSGG
T ss_pred CcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc------c-----cccccccccHHh---h---hcc-ccceeeehhhh
Confidence 489999999998733347899999 888888888 2 478889999872 1 244 99997732
Q ss_pred -CC--CCHHHHHHHHHhcccC--CEEEEEec
Q 019408 79 -FG--SDSSFLRTVFNAVKRD--GLLYLTST 104 (341)
Q Consensus 79 -yg--sp~~fld~al~~v~~g--GlL~vt~T 104 (341)
|. .....|..+.+++++| |-|.|..+
T Consensus 170 ~~~d~~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 170 DWSDEDCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp GS-HHHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred hcchHHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 22 1234577888899988 88887554
No 345
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=68.54 E-value=39 Score=32.05 Aligned_cols=88 Identities=11% Similarity=0.066 Sum_probs=54.5
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEecc---HHHHHHHhhhcCCcccEEEeCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFD---ANRVLSECYLKREFFDLIDIDSF 79 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~D---A~~~l~~~~~~~~~fDvIdlDPy 79 (341)
+.|...++.|+..|+..++..+.+++..+++++ .+.. ..+.....+ .+.-+... ..++.+|+|+ |..
T Consensus 172 ~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----~g~~----~~i~~~~~~~~~~~~~~~~~-~~~~~~d~vi-d~~ 241 (341)
T cd08262 172 PIGLAVIAALKARGVGPIVASDFSPERRALALA----MGAD----IVVDPAADSPFAAWAAELAR-AGGPKPAVIF-ECV 241 (341)
T ss_pred HHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----cCCc----EEEcCCCcCHHHHHHHHHHH-hCCCCCCEEE-ECC
Confidence 456666788887898888999999988887765 2221 111111111 11111111 2245699775 887
Q ss_pred CCCHHHHHHHHHhcccCCEEEE
Q 019408 80 GSDSSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 80 gsp~~fld~al~~v~~gGlL~v 101 (341)
|.+ ..+..+++.++++|.+..
T Consensus 242 g~~-~~~~~~~~~l~~~g~~v~ 262 (341)
T cd08262 242 GAP-GLIQQIIEGAPPGGRIVV 262 (341)
T ss_pred CCH-HHHHHHHHHhccCCEEEE
Confidence 753 467788999999998875
No 346
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=68.04 E-value=93 Score=28.06 Aligned_cols=70 Identities=14% Similarity=0.022 Sum_probs=40.3
Q ss_pred ccccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHH------HHHHHhhhcCCccc
Q 019408 2 CGCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDAN------RVLSECYLKREFFD 72 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~------~~l~~~~~~~~~fD 72 (341)
.|+|..|...++. .|+ +|++.|.+++..+-+.+.++..+. ++.++..|.. .++......-...|
T Consensus 17 Ga~g~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~~------~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d 89 (255)
T PRK07523 17 GSSQGIGYALAEGLAQAGA-EVILNGRDPAKLAAAAESLKGQGL------SAHALAFDVTDHDAVRAAIDAFEAEIGPID 89 (255)
T ss_pred CCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCc------eEEEEEccCCCHHHHHHHHHHHHHhcCCCC
Confidence 4667777766553 576 588999998877766666654332 2344444432 23333222223578
Q ss_pred EEEeCC
Q 019408 73 LIDIDS 78 (341)
Q Consensus 73 vIdlDP 78 (341)
+|+.-.
T Consensus 90 ~li~~a 95 (255)
T PRK07523 90 ILVNNA 95 (255)
T ss_pred EEEECC
Confidence 887665
No 347
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=68.04 E-value=4.8 Score=27.13 Aligned_cols=28 Identities=25% Similarity=0.679 Sum_probs=17.9
Q ss_pred eEEEcCCCCCc-cc-ccccccCCCCC-CCCC
Q 019408 187 FISYCNHCGNS-QA-YSWEELGQMSC-PCSN 214 (341)
Q Consensus 187 ~v~~C~~C~~~-~~-~~~~~~~~~~C-~c~~ 214 (341)
|-|.|..||.. +. +++.+.....| .|++
T Consensus 4 Yey~C~~Cg~~fe~~~~~~~~~~~~CP~Cg~ 34 (42)
T PF09723_consen 4 YEYRCEECGHEFEVLQSISEDDPVPCPECGS 34 (42)
T ss_pred EEEEeCCCCCEEEEEEEcCCCCCCcCCCCCC
Confidence 67899999944 43 45555333567 4665
No 348
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=67.88 E-value=33 Score=32.64 Aligned_cols=84 Identities=14% Similarity=0.107 Sum_probs=52.4
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
+.|...++.|+..|+ +|++.+.+++-.+.+++ .+.. .-+.....|..+.+... ..+|+|+ |-.|.+
T Consensus 174 ~iG~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~----~g~~----~~i~~~~~~~~~~~~~~----~~~d~vi-~~~g~~ 239 (333)
T cd08296 174 GLGHLAVQYAAKMGF-RTVAISRGSDKADLARK----LGAH----HYIDTSKEDVAEALQEL----GGAKLIL-ATAPNA 239 (333)
T ss_pred HHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH----cCCc----EEecCCCccHHHHHHhc----CCCCEEE-ECCCch
Confidence 456667778887787 58899999877776644 3431 11111122333333332 2478776 655533
Q ss_pred HHHHHHHHHhcccCCEEEE
Q 019408 83 SSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~v 101 (341)
..++.+++.++.+|-+..
T Consensus 240 -~~~~~~~~~l~~~G~~v~ 257 (333)
T cd08296 240 -KAISALVGGLAPRGKLLI 257 (333)
T ss_pred -HHHHHHHHHcccCCEEEE
Confidence 567889999999998875
No 349
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular
Probab=67.84 E-value=11 Score=26.82 Aligned_cols=47 Identities=17% Similarity=0.433 Sum_probs=38.2
Q ss_pred HHHHHHHhhcccCCCCCCcceehhHHHhhcCCCCCCHHHHHHHHHHCCCEEeeee
Q 019408 259 LEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNSPSLKTMMSAVQKEGYVASRSH 313 (341)
Q Consensus 259 ~~~ll~~~~~e~~~~~pp~yy~~~~l~~~~k~~~p~~~~~~~~L~~~Gy~as~tH 313 (341)
...+++.+.+. .+.++.+|+..++++......=+..|.+.|. +-|+|
T Consensus 2 ~~~Il~~l~~~-------~~~s~~ela~~~~VS~~TiRRDl~~L~~~g~-i~r~~ 48 (57)
T PF08220_consen 2 QQQILELLKEK-------GKVSVKELAEEFGVSEMTIRRDLNKLEKQGL-IKRTH 48 (57)
T ss_pred HHHHHHHHHHc-------CCEEHHHHHHHHCcCHHHHHHHHHHHHHCCC-EEEEc
Confidence 45677777632 2589999999999998888888999999998 67776
No 350
>COG1959 Predicted transcriptional regulator [Transcription]
Probab=67.72 E-value=11 Score=32.66 Aligned_cols=57 Identities=19% Similarity=0.285 Sum_probs=49.8
Q ss_pred eehhHHHhhcCCCCCCHHHHHHHHHHCCCEEeeeecCCCceecCCCHHH--HHHHHHhhh
Q 019408 279 IKLDEMASRAKMNSPSLKTMMSAVQKEGYVASRSHIASNAIKTNCPMVA--CIRIAKELQ 336 (341)
Q Consensus 279 y~~~~l~~~~k~~~p~~~~~~~~L~~~Gy~as~tH~~~~~iKTdAp~~~--i~~i~~~~~ 336 (341)
-++.+||...+++.+=+.+++..|+++|+--|+---.. |++=.-|+++ +.||++.+-
T Consensus 26 ~s~~~IA~~~~is~~~L~kil~~L~kaGlV~S~rG~~G-Gy~Lar~~~~Isl~dVv~ave 84 (150)
T COG1959 26 VSSAEIAERQGISPSYLEKILSKLRKAGLVKSVRGKGG-GYRLARPPEEITLGDVVRALE 84 (150)
T ss_pred ccHHHHHHHhCcCHHHHHHHHHHHHHcCCEEeecCCCC-CccCCCChHHCcHHHHHHHhc
Confidence 67999999999888878999999999999999887666 8999999998 678888664
No 351
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=67.44 E-value=7.6 Score=37.80 Aligned_cols=79 Identities=22% Similarity=0.164 Sum_probs=48.2
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEecc---HHHHHHHhhhcCCcccEEEeCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFD---ANRVLSECYLKREFFDLIDIDSF 79 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~D---A~~~l~~~~~~~~~fDvIdlDPy 79 (341)
|.|.=+-..+...+..+|+++|.|++|++..+++++... +++.+++.+ ..+.|... ....++|-|.+|-
T Consensus 30 G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~------~r~~~~~~~F~~l~~~l~~~-~~~~~~dgiL~DL- 101 (310)
T PF01795_consen 30 GGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFD------DRFIFIHGNFSNLDEYLKEL-NGINKVDGILFDL- 101 (310)
T ss_dssp TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCC------TTEEEEES-GGGHHHHHHHT-TTTS-EEEEEEE--
T ss_pred CcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhcc------ceEEEEeccHHHHHHHHHHc-cCCCccCEEEEcc-
Confidence 667777777765333789999999999999998877431 466666654 44444433 1234799999997
Q ss_pred CCCHHHHHHH
Q 019408 80 GSDSSFLRTV 89 (341)
Q Consensus 80 gsp~~fld~a 89 (341)
|-.+..+|.+
T Consensus 102 GvSS~Qld~~ 111 (310)
T PF01795_consen 102 GVSSMQLDDP 111 (310)
T ss_dssp S--HHHHHTG
T ss_pred ccCHHHhCCC
Confidence 3334666643
No 352
>cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.
Probab=67.34 E-value=13 Score=26.36 Aligned_cols=56 Identities=14% Similarity=0.224 Sum_probs=42.8
Q ss_pred eehhHHHhhcCCCCCCHHHHHHHHHHCCCEEeeeecCCCceecCCCHHHHHHHHHhh
Q 019408 279 IKLDEMASRAKMNSPSLKTMMSAVQKEGYVASRSHIASNAIKTNCPMVACIRIAKEL 335 (341)
Q Consensus 279 y~~~~l~~~~k~~~p~~~~~~~~L~~~Gy~as~tH~~~~~iKTdAp~~~i~~i~~~~ 335 (341)
.+..+|++.++++.+.....++.|.+.|+-....+-.+.-++.+. -.++++.++++
T Consensus 21 ~~~~ei~~~~~i~~~~i~~~l~~L~~~g~i~~~~~~~~~~~~~~~-g~~~~~~~~~~ 76 (78)
T cd00090 21 LTVSELAERLGLSQSTVSRHLKKLEEAGLVESRREGRRVYYSLTD-AERLLALLESL 76 (78)
T ss_pred cCHHHHHHHHCcCHhHHHHHHHHHHHCCCeEEEEeccEEEEEeCC-chHHHHHHHHh
Confidence 678899999999999999999999999999876655444455554 55666666654
No 353
>PRK05876 short chain dehydrogenase; Provisional
Probab=66.54 E-value=95 Score=28.80 Aligned_cols=70 Identities=16% Similarity=0.072 Sum_probs=39.8
Q ss_pred ccccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHH------HHHHHhhhcCCccc
Q 019408 2 CGCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDAN------RVLSECYLKREFFD 72 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~------~~l~~~~~~~~~fD 72 (341)
.|||..|...+.+ .|+ +|++.|.++...+-+.+.++..+. ++.++..|+. +++.+....-.+.|
T Consensus 13 Gas~gIG~ala~~La~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~------~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id 85 (275)
T PRK05876 13 GGASGIGLATGTEFARRGA-RVVLGDVDKPGLRQAVNHLRAEGF------DVHGVMCDVRHREEVTHLADEAFRLLGHVD 85 (275)
T ss_pred CCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC------eEEEEeCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 3567777666554 576 588999998777666555543332 3444555542 23333222223578
Q ss_pred EEEeCC
Q 019408 73 LIDIDS 78 (341)
Q Consensus 73 vIdlDP 78 (341)
+|+--.
T Consensus 86 ~li~nA 91 (275)
T PRK05876 86 VVFSNA 91 (275)
T ss_pred EEEECC
Confidence 887654
No 354
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=66.51 E-value=43 Score=31.71 Aligned_cols=89 Identities=18% Similarity=0.170 Sum_probs=53.7
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
+.|...++.|+..|+.+|++.+.+++-.+.+++ .++. .+...+.+..+-+.+. ..+..+|+| +|.-|.+
T Consensus 178 ~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~----~g~~-----~~~~~~~~~~~~i~~~-~~~~~~dvv-ld~~g~~ 246 (340)
T cd05284 178 GLGHIAVQILRALTPATVIAVDRSEEALKLAER----LGAD-----HVLNASDDVVEEVREL-TGGRGADAV-IDFVGSD 246 (340)
T ss_pred HHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHH----hCCc-----EEEcCCccHHHHHHHH-hCCCCCCEE-EEcCCCH
Confidence 356666777776675668888888887776643 3431 2211222222223332 223468976 4665532
Q ss_pred HHHHHHHHHhcccCCEEEEEe
Q 019408 83 SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~vt~ 103 (341)
+.++.++++++.+|-+....
T Consensus 247 -~~~~~~~~~l~~~g~~i~~g 266 (340)
T cd05284 247 -ETLALAAKLLAKGGRYVIVG 266 (340)
T ss_pred -HHHHHHHHHhhcCCEEEEEc
Confidence 67888999999999888643
No 355
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=66.45 E-value=40 Score=31.89 Aligned_cols=85 Identities=18% Similarity=0.171 Sum_probs=54.5
Q ss_pred cccHhHHHHhhh-CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEe--ccHHHHHHHhhhcCCcccEEEeCCC
Q 019408 3 GCGIRSLRYLAE-AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTH--FDANRVLSECYLKREFFDLIDIDSF 79 (341)
Q Consensus 3 gsG~rgir~a~e-~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~--~DA~~~l~~~~~~~~~fDvIdlDPy 79 (341)
+.|...+..|+. .|+ +|++.+.+++-.+.+++ .+.+ .+...+ .+..+.+.... + .+|++++|..
T Consensus 173 ~vG~~~~~la~~~~g~-~v~~~~~~~~~~~~~~~----~g~~-----~v~~~~~~~~~~~~v~~~~--~-~~d~vi~~~~ 239 (338)
T PRK09422 173 GLGNLALQYAKNVFNA-KVIAVDINDDKLALAKE----VGAD-----LTINSKRVEDVAKIIQEKT--G-GAHAAVVTAV 239 (338)
T ss_pred HHHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHH----cCCc-----EEecccccccHHHHHHHhc--C-CCcEEEEeCC
Confidence 345666777775 376 58999999988888754 3432 221111 23233343332 2 4798888875
Q ss_pred CCCHHHHHHHHHhcccCCEEEEE
Q 019408 80 GSDSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 80 gsp~~fld~al~~v~~gGlL~vt 102 (341)
+. ..++.+++.++.+|-+...
T Consensus 240 ~~--~~~~~~~~~l~~~G~~v~~ 260 (338)
T PRK09422 240 AK--AAFNQAVDAVRAGGRVVAV 260 (338)
T ss_pred CH--HHHHHHHHhccCCCEEEEE
Confidence 43 6788999999999998853
No 356
>PRK07791 short chain dehydrogenase; Provisional
Probab=66.26 E-value=88 Score=29.22 Aligned_cols=22 Identities=27% Similarity=0.227 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHHHHhcCCcEE
Q 019408 134 IGLRMLIGGAVREASAQGYHVS 155 (341)
Q Consensus 134 ~~lR~ll~~i~~~Aa~~~~~i~ 155 (341)
.++..+...++..-++++..+-
T Consensus 175 aal~~l~~~la~el~~~gIrVn 196 (286)
T PRK07791 175 AGIAALTLVAAAELGRYGVTVN 196 (286)
T ss_pred HHHHHHHHHHHHHHHHhCeEEE
Confidence 5677777777777777664433
No 357
>PRK07063 short chain dehydrogenase; Provisional
Probab=66.21 E-value=1e+02 Score=27.88 Aligned_cols=71 Identities=11% Similarity=-0.043 Sum_probs=41.0
Q ss_pred ccccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccH------HHHHHHhhhcCCccc
Q 019408 2 CGCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDA------NRVLSECYLKREFFD 72 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA------~~~l~~~~~~~~~fD 72 (341)
.|+|..|...+++ .|+ +|++.|.+++..+-+.+.++..+.. .++.++..|. .+++.+....-...|
T Consensus 14 Gas~gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id 88 (260)
T PRK07063 14 GAAQGIGAAIARAFAREGA-AVALADLDAALAERAAAAIARDVAG----ARVLAVPADVTDAASVAAAVAAAEEAFGPLD 88 (260)
T ss_pred CCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhccCC----ceEEEEEccCCCHHHHHHHHHHHHHHhCCCc
Confidence 3566667666553 566 5899999988887777766542111 2344555553 333433322234678
Q ss_pred EEEeC
Q 019408 73 LIDID 77 (341)
Q Consensus 73 vIdlD 77 (341)
+++--
T Consensus 89 ~li~~ 93 (260)
T PRK07063 89 VLVNN 93 (260)
T ss_pred EEEEC
Confidence 77654
No 358
>PRK05599 hypothetical protein; Provisional
Probab=65.41 E-value=1.1e+02 Score=27.79 Aligned_cols=71 Identities=11% Similarity=0.003 Sum_probs=42.0
Q ss_pred ccccHhHHHHhhh--CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHH------HHHHhhhcCCcccE
Q 019408 2 CGCGIRSLRYLAE--AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANR------VLSECYLKREFFDL 73 (341)
Q Consensus 2 agsG~rgir~a~e--~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~------~l~~~~~~~~~fDv 73 (341)
.||+..|...+.+ .| .+|+..+.+++..+-+.+.++..+- ..+.++..|+.+ ++.+......+.|+
T Consensus 7 Gas~GIG~aia~~l~~g-~~Vil~~r~~~~~~~~~~~l~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~ 80 (246)
T PRK05599 7 GGTSDIAGEIATLLCHG-EDVVLAARRPEAAQGLASDLRQRGA-----TSVHVLSFDAQDLDTHRELVKQTQELAGEISL 80 (246)
T ss_pred eCccHHHHHHHHHHhCC-CEEEEEeCCHHHHHHHHHHHHhccC-----CceEEEEcccCCHHHHHHHHHHHHHhcCCCCE
Confidence 4667777777664 35 5688889998887777666664432 234445555332 23332222246798
Q ss_pred EEeCC
Q 019408 74 IDIDS 78 (341)
Q Consensus 74 IdlDP 78 (341)
++.-+
T Consensus 81 lv~na 85 (246)
T PRK05599 81 AVVAF 85 (246)
T ss_pred EEEec
Confidence 87655
No 359
>PRK06139 short chain dehydrogenase; Provisional
Probab=65.27 E-value=81 Score=30.51 Aligned_cols=70 Identities=6% Similarity=-0.036 Sum_probs=42.7
Q ss_pred ccccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHH------HHHHHhhhcCCccc
Q 019408 2 CGCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDAN------RVLSECYLKREFFD 72 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~------~~l~~~~~~~~~fD 72 (341)
.|||..|...+.+ .|+ +|++.+.+++..+-+.+.++..+. ++.++..|.. ++...........|
T Consensus 14 GAs~GIG~aia~~la~~G~-~Vvl~~R~~~~l~~~~~~~~~~g~------~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD 86 (330)
T PRK06139 14 GASSGIGQATAEAFARRGA-RLVLAARDEEALQAVAEECRALGA------EVLVVPTDVTDADQVKALATQAASFGGRID 86 (330)
T ss_pred CCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC------cEEEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence 4677777776654 576 589999999988888887775443 3333444432 22332222224579
Q ss_pred EEEeCC
Q 019408 73 LIDIDS 78 (341)
Q Consensus 73 vIdlDP 78 (341)
+++.-.
T Consensus 87 ~lVnnA 92 (330)
T PRK06139 87 VWVNNV 92 (330)
T ss_pred EEEECC
Confidence 887654
No 360
>TIGR00122 birA_repr_reg BirA biotin operon repressor domain. This model may recognize some other putative repressor proteins, such as DnrO of Streptomyces peucetius with scores below the noise cutoff but with significance shown by low E-value.
Probab=64.85 E-value=13 Score=27.34 Aligned_cols=46 Identities=7% Similarity=0.127 Sum_probs=38.9
Q ss_pred eehhHHHhhcCCCCCCHHHHHHHHHHCCCEEeeeecCCCceecCCCHHH
Q 019408 279 IKLDEMASRAKMNSPSLKTMMSAVQKEGYVASRSHIASNAIKTNCPMVA 327 (341)
Q Consensus 279 y~~~~l~~~~k~~~p~~~~~~~~L~~~Gy~as~tH~~~~~iKTdAp~~~ 327 (341)
.+..+||..++++.+....-+..|++.|+..... ..|++...|++.
T Consensus 14 ~~~~eLa~~l~vS~~tv~~~l~~L~~~g~~i~~~---~~g~~l~~~~~l 59 (69)
T TIGR00122 14 FSGEKLGEALGMSRTAVNKHIQTLREWGVDVLTV---GKGYRLPPPIPL 59 (69)
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEEec---CCceEecCcccc
Confidence 3489999999999999999999999999987665 568888777643
No 361
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=64.68 E-value=26 Score=32.70 Aligned_cols=80 Identities=16% Similarity=0.113 Sum_probs=56.7
Q ss_pred hCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC----HHHHHHH
Q 019408 14 EAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD----SSFLRTV 89 (341)
Q Consensus 14 e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp----~~fld~a 89 (341)
|+...+-+.++.+|+.++-+++|.=.- .+++.++.+==.+.+..+. .+.||=|+-|-|+.- ..|-+.+
T Consensus 121 e~~p~~H~IiE~hp~V~krmr~~gw~e------k~nViil~g~WeDvl~~L~--d~~FDGI~yDTy~e~yEdl~~~hqh~ 192 (271)
T KOG1709|consen 121 EAPPDEHWIIEAHPDVLKRMRDWGWRE------KENVIILEGRWEDVLNTLP--DKHFDGIYYDTYSELYEDLRHFHQHV 192 (271)
T ss_pred hcCCcceEEEecCHHHHHHHHhccccc------ccceEEEecchHhhhcccc--ccCcceeEeechhhHHHHHHHHHHHH
Confidence 455667789999999999999976421 1455565544444444432 235999999999742 2456799
Q ss_pred HHhcccCCEEEE
Q 019408 90 FNAVKRDGLLYL 101 (341)
Q Consensus 90 l~~v~~gGlL~v 101 (341)
+++||++|.+..
T Consensus 193 ~rLLkP~gv~Sy 204 (271)
T KOG1709|consen 193 VRLLKPEGVFSY 204 (271)
T ss_pred hhhcCCCceEEE
Confidence 999999999986
No 362
>PRK05855 short chain dehydrogenase; Validated
Probab=64.61 E-value=85 Score=31.94 Aligned_cols=70 Identities=10% Similarity=-0.026 Sum_probs=41.6
Q ss_pred ccccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHH------HHHHhhhcCCccc
Q 019408 2 CGCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANR------VLSECYLKREFFD 72 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~------~l~~~~~~~~~fD 72 (341)
.|||..|-..+.+ .|.+ |+..+.|+...+.+.+.++..+. ++.++..|+.+ ++........+.|
T Consensus 322 G~s~giG~~~a~~l~~~G~~-v~~~~r~~~~~~~~~~~~~~~~~------~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id 394 (582)
T PRK05855 322 GAGSGIGRETALAFAREGAE-VVASDIDEAAAERTAELIRAAGA------VAHAYRVDVSDADAMEAFAEWVRAEHGVPD 394 (582)
T ss_pred CCcCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCC------eEEEEEcCCCCHHHHHHHHHHHHHhcCCCc
Confidence 4788888877665 5664 99999998877776666654332 33444444322 2333222223578
Q ss_pred EEEeCC
Q 019408 73 LIDIDS 78 (341)
Q Consensus 73 vIdlDP 78 (341)
+|+.-.
T Consensus 395 ~lv~~A 400 (582)
T PRK05855 395 IVVNNA 400 (582)
T ss_pred EEEECC
Confidence 876654
No 363
>PRK09291 short chain dehydrogenase; Provisional
Probab=64.33 E-value=98 Score=27.80 Aligned_cols=70 Identities=7% Similarity=-0.092 Sum_probs=39.9
Q ss_pred ccccHhHHHHhh---hCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC
Q 019408 2 CGCGIRSLRYLA---EAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS 78 (341)
Q Consensus 2 agsG~rgir~a~---e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP 78 (341)
.|||..|...+. +.|+ +|++.+.++...+.+.+..+..+. .+.+...|..+.-.-........|+|+...
T Consensus 9 Gasg~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~------~~~~~~~D~~~~~~~~~~~~~~id~vi~~a 81 (257)
T PRK09291 9 GAGSGFGREVALRLARKGH-NVIAGVQIAPQVTALRAEAARRGL------ALRVEKLDLTDAIDRAQAAEWDVDVLLNNA 81 (257)
T ss_pred CCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC------cceEEEeeCCCHHHHHHHhcCCCCEEEECC
Confidence 467777776654 3565 588888887766666655543332 345556665433211111123689888754
No 364
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=64.00 E-value=27 Score=25.61 Aligned_cols=34 Identities=3% Similarity=0.119 Sum_probs=28.7
Q ss_pred cceehhHHHhhcCCCCCCHHHHHHHHHHCCCEEee
Q 019408 277 GYIKLDEMASRAKMNSPSLKTMMSAVQKEGYVASR 311 (341)
Q Consensus 277 ~yy~~~~l~~~~k~~~p~~~~~~~~L~~~Gy~as~ 311 (341)
.-++.+++.+.+|.+.+ .+++.+.|+.+||.+..
T Consensus 4 i~~~~~~i~~llG~~i~-~~ei~~~L~~lg~~~~~ 37 (71)
T smart00874 4 ITLRRERINRLLGLDLS-AEEIEEILKRLGFEVEV 37 (71)
T ss_pred EEecHHHHHHHHCCCCC-HHHHHHHHHHCCCeEEe
Confidence 45788999999998654 78899999999999854
No 365
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=63.48 E-value=61 Score=28.93 Aligned_cols=87 Identities=14% Similarity=0.118 Sum_probs=52.0
Q ss_pred ccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCCH
Q 019408 4 CGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSDS 83 (341)
Q Consensus 4 sG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp~ 83 (341)
.|...+++++..| .+|++.+.+++..+.+++. +.. ..+.....+....+. ...+..+|+|+ |.-+.+
T Consensus 146 ~G~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~~----g~~----~~~~~~~~~~~~~~~--~~~~~~~d~vi-~~~~~~- 212 (271)
T cd05188 146 VGLLAAQLAKAAG-ARVIVTDRSDEKLELAKEL----GAD----HVIDYKEEDLEEELR--LTGGGGADVVI-DAVGGP- 212 (271)
T ss_pred HHHHHHHHHHHcC-CeEEEEcCCHHHHHHHHHh----CCc----eeccCCcCCHHHHHH--HhcCCCCCEEE-ECCCCH-
Confidence 4556677777667 5789999998887777542 221 111111122222222 12345799886 554432
Q ss_pred HHHHHHHHhcccCCEEEEEe
Q 019408 84 SFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 84 ~fld~al~~v~~gGlL~vt~ 103 (341)
..+..+++.++++|-+....
T Consensus 213 ~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 213 ETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred HHHHHHHHhcccCCEEEEEc
Confidence 56778889999999988644
No 366
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=63.02 E-value=46 Score=32.16 Aligned_cols=89 Identities=13% Similarity=0.156 Sum_probs=54.9
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
+.|...+++|+..|+..|++.+.+++-.+.+++ .++. ..+.....+....+.... .+..+|+| +|--+.
T Consensus 193 ~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~----~g~~----~vv~~~~~~~~~~l~~~~-~~~~vd~v-ld~~~~- 261 (363)
T cd08279 193 GVGLNAIQGARIAGASRIIAVDPVPEKLELARR----FGAT----HTVNASEDDAVEAVRDLT-DGRGADYA-FEAVGR- 261 (363)
T ss_pred HHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----hCCe----EEeCCCCccHHHHHHHHc-CCCCCCEE-EEcCCC-
Confidence 456677889988888778899888887766642 2331 111111223333343332 23468955 565442
Q ss_pred HHHHHHHHHhcccCCEEEEE
Q 019408 83 SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~vt 102 (341)
...++.+++.++++|.+...
T Consensus 262 ~~~~~~~~~~l~~~G~~v~~ 281 (363)
T cd08279 262 AATIRQALAMTRKGGTAVVV 281 (363)
T ss_pred hHHHHHHHHHhhcCCeEEEE
Confidence 26678889999999988754
No 367
>PRK12743 oxidoreductase; Provisional
Probab=62.94 E-value=1.2e+02 Score=27.48 Aligned_cols=70 Identities=9% Similarity=0.024 Sum_probs=38.7
Q ss_pred ccccHhHHHHhhh---CCCCEEEEe-eCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccH------HHHHHHhhhcCCcc
Q 019408 2 CGCGIRSLRYLAE---AKADFVMAN-DGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDA------NRVLSECYLKREFF 71 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~-Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA------~~~l~~~~~~~~~f 71 (341)
.|||..|...+.. .|+. |++. +.+++..+.+.+-++.++. ++.++..|. .+++.+....-.+.
T Consensus 9 Gas~giG~~~a~~l~~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 81 (256)
T PRK12743 9 ASDSGIGKACALLLAQQGFD-IGITWHSDEEGAKETAEEVRSHGV------RAEIRQLDLSDLPEGAQALDKLIQRLGRI 81 (256)
T ss_pred CCCchHHHHHHHHHHHCCCE-EEEEeCCChHHHHHHHHHHHhcCC------ceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 4677778777654 5664 5555 4566666666665554432 344444443 23343332222357
Q ss_pred cEEEeCC
Q 019408 72 DLIDIDS 78 (341)
Q Consensus 72 DvIdlDP 78 (341)
|+|+.-.
T Consensus 82 d~li~~a 88 (256)
T PRK12743 82 DVLVNNA 88 (256)
T ss_pred CEEEECC
Confidence 9887765
No 368
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=62.87 E-value=1.1e+02 Score=27.08 Aligned_cols=70 Identities=14% Similarity=0.091 Sum_probs=40.6
Q ss_pred ccccHhHHHHhhh---CCCCEEEEe-eCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHH------HHHHhhhcCCcc
Q 019408 2 CGCGIRSLRYLAE---AKADFVMAN-DGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANR------VLSECYLKREFF 71 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~-Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~------~l~~~~~~~~~f 71 (341)
.|||..|.+.+.. .|++ |+.. +.+++..+.+...+...+ .++.+...|..+ ++......-...
T Consensus 12 Gasg~iG~~la~~l~~~g~~-v~~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 84 (247)
T PRK05565 12 GASGGIGRAIAELLAKEGAK-VVIAYDINEEAAQELLEEIKEEG------GDAIAVKADVSSEEDVENLVEQIVEKFGKI 84 (247)
T ss_pred CCCcHHHHHHHHHHHHCCCE-EEEEcCCCHHHHHHHHHHHHhcC------CeEEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence 4678888876543 5664 6666 988887776666665422 234555555432 222221111258
Q ss_pred cEEEeCC
Q 019408 72 DLIDIDS 78 (341)
Q Consensus 72 DvIdlDP 78 (341)
|+|+.-+
T Consensus 85 d~vi~~a 91 (247)
T PRK05565 85 DILVNNA 91 (247)
T ss_pred CEEEECC
Confidence 9888755
No 369
>PRK07576 short chain dehydrogenase; Provisional
Probab=62.86 E-value=1.2e+02 Score=27.65 Aligned_cols=70 Identities=11% Similarity=0.016 Sum_probs=38.3
Q ss_pred ccccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccH------HHHHHHhhhcCCccc
Q 019408 2 CGCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDA------NRVLSECYLKREFFD 72 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA------~~~l~~~~~~~~~fD 72 (341)
.|||..|...+++ .|+ +|++.|.+++..+-..+.+...+. ++.++..|+ .+++..........|
T Consensus 16 GasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~------~~~~~~~Dv~~~~~i~~~~~~~~~~~~~iD 88 (264)
T PRK07576 16 GGTSGINLGIAQAFARAGA-NVAVASRSQEKVDAAVAQLQQAGP------EGLGVSADVRDYAAVEAAFAQIADEFGPID 88 (264)
T ss_pred CCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCC------ceEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence 4677777766554 565 599999998766655544443221 233344443 334443322223579
Q ss_pred EEEeCC
Q 019408 73 LIDIDS 78 (341)
Q Consensus 73 vIdlDP 78 (341)
+|+.-.
T Consensus 89 ~vi~~a 94 (264)
T PRK07576 89 VLVSGA 94 (264)
T ss_pred EEEECC
Confidence 886543
No 370
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=62.77 E-value=1.2e+02 Score=27.37 Aligned_cols=70 Identities=9% Similarity=0.019 Sum_probs=39.6
Q ss_pred ccccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHH------HHHHHhhhcCCccc
Q 019408 2 CGCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDAN------RVLSECYLKREFFD 72 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~------~~l~~~~~~~~~fD 72 (341)
.|||..|...+.+ .|+ +|++.|.++...+-+.+.++..+. ++.++..|.. +++......-..+|
T Consensus 16 Gas~giG~~ia~~L~~~G~-~vvl~~r~~~~~~~~~~~l~~~~~------~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 88 (254)
T PRK08085 16 GSAQGIGFLLATGLAEYGA-EIIINDITAERAELAVAKLRQEGI------KAHAAPFNVTHKQEVEAAIEHIEKDIGPID 88 (254)
T ss_pred CCCChHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHHHhcCC------eEEEEecCCCCHHHHHHHHHHHHHhcCCCC
Confidence 4677777666554 465 688999998777666666653321 3334444432 22333222223579
Q ss_pred EEEeCC
Q 019408 73 LIDIDS 78 (341)
Q Consensus 73 vIdlDP 78 (341)
+|+.-.
T Consensus 89 ~vi~~a 94 (254)
T PRK08085 89 VLINNA 94 (254)
T ss_pred EEEECC
Confidence 887654
No 371
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=61.88 E-value=1.2e+02 Score=27.13 Aligned_cols=68 Identities=13% Similarity=-0.013 Sum_probs=41.0
Q ss_pred ccccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHH------HHHHHhhhcCCccc
Q 019408 2 CGCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDAN------RVLSECYLKREFFD 72 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~------~~l~~~~~~~~~fD 72 (341)
.|||..|...+++ .|. +|+..+.++...+.....++..+. ++.++..|.. .++......-...|
T Consensus 11 G~sg~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~------~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d 83 (258)
T PRK12429 11 GAASGIGLEIALALAKEGA-KVVIADLNDEAAAAAAEALQKAGG------KAIGVAMDVTDEEAINAGIDYAVETFGGVD 83 (258)
T ss_pred CCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCC------cEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 4688888887765 454 689999998887776666654332 3444454432 33333322223578
Q ss_pred EEEe
Q 019408 73 LIDI 76 (341)
Q Consensus 73 vIdl 76 (341)
+|+.
T Consensus 84 ~vi~ 87 (258)
T PRK12429 84 ILVN 87 (258)
T ss_pred EEEE
Confidence 8765
No 372
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=61.73 E-value=8.6 Score=25.08 Aligned_cols=28 Identities=18% Similarity=0.549 Sum_probs=16.7
Q ss_pred eEEEcCCCCCccc--ccccccCCCCC-CCCC
Q 019408 187 FISYCNHCGNSQA--YSWEELGQMSC-PCSN 214 (341)
Q Consensus 187 ~v~~C~~C~~~~~--~~~~~~~~~~C-~c~~ 214 (341)
|.|.|..||.... ++..+.....| .|+.
T Consensus 4 Y~y~C~~Cg~~fe~~~~~~~~~~~~CP~Cg~ 34 (41)
T smart00834 4 YEYRCEDCGHTFEVLQKISDDPLATCPECGG 34 (41)
T ss_pred EEEEcCCCCCEEEEEEecCCCCCCCCCCCCC
Confidence 6789999999543 22222222457 4665
No 373
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=61.73 E-value=65 Score=29.97 Aligned_cols=88 Identities=17% Similarity=0.155 Sum_probs=53.6
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
+.|...++.|+..|+. |++.+.+++-.+.+++ .+.. ..+.....+..+-+... ..++.+|+|+ |-.|.
T Consensus 154 ~~g~~~~~la~~~g~~-v~~~~~~~~~~~~~~~----~g~~----~~~~~~~~~~~~~~~~~-~~~~~~d~vl-~~~g~- 221 (324)
T cd08244 154 GLGSLLVQLAKAAGAT-VVGAAGGPAKTALVRA----LGAD----VAVDYTRPDWPDQVREA-LGGGGVTVVL-DGVGG- 221 (324)
T ss_pred hHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHH----cCCC----EEEecCCccHHHHHHHH-cCCCCceEEE-ECCCh-
Confidence 3455667777777764 8888888887776643 3331 11111122333334332 2345689886 77775
Q ss_pred HHHHHHHHHhcccCCEEEEEe
Q 019408 83 SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~vt~ 103 (341)
+..+.++++++.+|-+....
T Consensus 222 -~~~~~~~~~l~~~g~~v~~g 241 (324)
T cd08244 222 -AIGRAALALLAPGGRFLTYG 241 (324)
T ss_pred -HhHHHHHHHhccCcEEEEEe
Confidence 45688899999999877533
No 374
>PRK08267 short chain dehydrogenase; Provisional
Probab=61.62 E-value=1.2e+02 Score=27.47 Aligned_cols=36 Identities=17% Similarity=-0.118 Sum_probs=25.7
Q ss_pred ccccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHH
Q 019408 2 CGCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLK 38 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~ 38 (341)
.|||..|...+.. .|+ +|++.|.+++..+.+.+.+.
T Consensus 8 Gasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~ 46 (260)
T PRK08267 8 GAASGIGRATALLFAAEGW-RVGAYDINEAGLAALAAELG 46 (260)
T ss_pred CCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhc
Confidence 4677777766554 565 68899999988777766544
No 375
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=61.40 E-value=6.2 Score=37.05 Aligned_cols=54 Identities=7% Similarity=0.039 Sum_probs=41.9
Q ss_pred EEeeCCHHHHHHHHHHHHHc-CCCCCCCccEEE-EeccHHHHHHHhhhcCCcccEEEeCC
Q 019408 21 MANDGNDAHRRVILGNLKSI-ERGSGDEKRWVV-THFDANRVLSECYLKREFFDLIDIDS 78 (341)
Q Consensus 21 ~~~Dis~~A~~~i~~N~~~n-~~~~~~~~~~~v-~~~DA~~~l~~~~~~~~~fDvIdlDP 78 (341)
+.-|+|+.+++.++.|+..| +++ ..+++ .+.|-..++.......++||++...|
T Consensus 106 vGseid~~sl~sA~~ii~~N~~l~----~~I~lr~qk~~~~if~giig~nE~yd~tlCNP 161 (292)
T COG3129 106 VGSEIDSQSLSSAKAIISANPGLE----RAIRLRRQKDSDAIFNGIIGKNERYDATLCNP 161 (292)
T ss_pred ecCccCHHHHHHHHHHHHcCcchh----hheeEEeccCccccccccccccceeeeEecCC
Confidence 57899999999999999998 664 34443 45666666665555678999999999
No 376
>PRK08643 acetoin reductase; Validated
Probab=61.34 E-value=1.2e+02 Score=27.18 Aligned_cols=69 Identities=9% Similarity=-0.041 Sum_probs=38.9
Q ss_pred ccccHhHHHHhh---hCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHH------HHHHHhhhcCCccc
Q 019408 2 CGCGIRSLRYLA---EAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDAN------RVLSECYLKREFFD 72 (341)
Q Consensus 2 agsG~rgir~a~---e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~------~~l~~~~~~~~~fD 72 (341)
.|||..|...+. +.|+ +|+..|.+++..+.+...+...+. ++.++..|.. +++.+....-.+.|
T Consensus 9 Gas~giG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~------~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 81 (256)
T PRK08643 9 GAGQGIGFAIAKRLVEDGF-KVAIVDYNEETAQAAADKLSKDGG------KAIAVKADVSDRDQVFAAVRQVVDTFGDLN 81 (256)
T ss_pred CCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC------eEEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence 356666665544 3565 689999998877777776654321 3344444432 23333322223578
Q ss_pred EEEeC
Q 019408 73 LIDID 77 (341)
Q Consensus 73 vIdlD 77 (341)
+|+.-
T Consensus 82 ~vi~~ 86 (256)
T PRK08643 82 VVVNN 86 (256)
T ss_pred EEEEC
Confidence 77654
No 377
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=60.92 E-value=12 Score=32.65 Aligned_cols=70 Identities=17% Similarity=0.298 Sum_probs=47.4
Q ss_pred hHHHHHHHhhcccCCCCCCcceehhHHHhhcCCCCCCHHHHHHHHHHCCCEEeeeecCCCcee-cCCCHHHHHHHHH
Q 019408 258 DLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNSPSLKTMMSAVQKEGYVASRSHIASNAIK-TNCPMVACIRIAK 333 (341)
Q Consensus 258 ~~~~ll~~~~~e~~~~~pp~yy~~~~l~~~~k~~~p~~~~~~~~L~~~Gy~as~tH~~~~~iK-TdAp~~~i~~i~~ 333 (341)
.....|+.|..-.+ + -.|-.+.+||+.|++++|+..++++.|.+.||.- |-.-.|++ |+.--....++++
T Consensus 7 ~~edYL~~Iy~l~~-~--~~~~~~~diA~~L~Vsp~sVt~ml~rL~~~GlV~---~~~y~gi~LT~~G~~~a~~~~r 77 (154)
T COG1321 7 TEEDYLETIYELLE-E--KGFARTKDIAERLKVSPPSVTEMLKRLERLGLVE---YEPYGGVTLTEKGREKAKELLR 77 (154)
T ss_pred HHHHHHHHHHHHHh-c--cCcccHHHHHHHhCCCcHHHHHHHHHHHHCCCeE---EecCCCeEEChhhHHHHHHHHH
Confidence 36677777764222 2 2478999999999999999999999999999964 22223333 4454444444443
No 378
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=60.37 E-value=85 Score=31.85 Aligned_cols=89 Identities=22% Similarity=0.205 Sum_probs=48.7
Q ss_pred cccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcC--------C--
Q 019408 3 GCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKR--------E-- 69 (341)
Q Consensus 3 gsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~--------~-- 69 (341)
|=|-.|+-.|.. +|. +|+.+|||+..++.+.+ | +..+..-|--.++++....+ +
T Consensus 16 GLGYVGLPlA~~fA~~G~-~ViG~DIn~~~Vd~ln~-----G-------~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l 82 (436)
T COG0677 16 GLGYVGLPLAAAFASAGF-KVIGVDINQKKVDKLNR-----G-------ESYIEEPDLDEVVKEAVESGKLRATTDPEEL 82 (436)
T ss_pred ccccccHHHHHHHHHcCC-ceEeEeCCHHHHHHHhC-----C-------cceeecCcHHHHHHHHHhcCCceEecChhhc
Confidence 335555544433 454 59999999999997753 1 22233334444344332211 1
Q ss_pred -cccEEEe-CC-----CCCC-HHHHHHHH----HhcccCCEEEEEec
Q 019408 70 -FFDLIDI-DS-----FGSD-SSFLRTVF----NAVKRDGLLYLTST 104 (341)
Q Consensus 70 -~fDvIdl-DP-----ygsp-~~fld~al----~~v~~gGlL~vt~T 104 (341)
..|++.+ =| +..| -.|+.+|. ..|++|-++.+.+|
T Consensus 83 ~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST 129 (436)
T COG0677 83 KECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILEST 129 (436)
T ss_pred ccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecC
Confidence 3564433 23 3333 35666554 45788888888776
No 379
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=60.26 E-value=1.3e+02 Score=26.85 Aligned_cols=70 Identities=6% Similarity=-0.027 Sum_probs=40.0
Q ss_pred ccccHhHHHHhh---hCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHH------HHHHHhhhcCCccc
Q 019408 2 CGCGIRSLRYLA---EAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDAN------RVLSECYLKREFFD 72 (341)
Q Consensus 2 agsG~rgir~a~---e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~------~~l~~~~~~~~~fD 72 (341)
.|||..|...++ +.|. +|++.+.++...+.+.+.++..+ .++.++..|.. +++......-...|
T Consensus 14 G~sg~iG~~l~~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 86 (239)
T PRK07666 14 GAGRGIGRAVAIALAKEGV-NVGLLARTEENLKAVAEEVEAYG------VKVVIATADVSDYEEVTAAIEQLKNELGSID 86 (239)
T ss_pred cCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhC------CeEEEEECCCCCHHHHHHHHHHHHHHcCCcc
Confidence 467777776544 3577 79999999877666655554332 24555555542 22333222223568
Q ss_pred EEEeCC
Q 019408 73 LIDIDS 78 (341)
Q Consensus 73 vIdlDP 78 (341)
+|+.-.
T Consensus 87 ~vi~~a 92 (239)
T PRK07666 87 ILINNA 92 (239)
T ss_pred EEEEcC
Confidence 877543
No 380
>TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator). This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency.
Probab=60.08 E-value=18 Score=29.79 Aligned_cols=57 Identities=14% Similarity=0.263 Sum_probs=43.8
Q ss_pred ceehhHHHhhcCCCCCCHHHHHHHHHHCCCEEeeeecCCCceecCCCHHH--HHHHHHhh
Q 019408 278 YIKLDEMASRAKMNSPSLKTMMSAVQKEGYVASRSHIASNAIKTNCPMVA--CIRIAKEL 335 (341)
Q Consensus 278 yy~~~~l~~~~k~~~p~~~~~~~~L~~~Gy~as~tH~~~~~iKTdAp~~~--i~~i~~~~ 335 (341)
..+..+|+..++++.+...+++..|.++||-.+.. =...|++=..|.+. +.||++.+
T Consensus 25 ~~s~~eia~~~~i~~~~v~~il~~L~~~gli~~~~-g~~ggy~l~~~~~~itl~~I~~~~ 83 (132)
T TIGR00738 25 PVSVKEIAERQGISRSYLEKILRTLRRAGLVESVR-GPGGGYRLARPPEEITVGDVVRAV 83 (132)
T ss_pred cCcHHHHHHHHCcCHHHHHHHHHHHHHCCcEEecc-CCCCCccCCCCHHHCCHHHHHHHH
Confidence 47999999999999999999999999999976532 22347777666665 45666654
No 381
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=59.99 E-value=68 Score=31.79 Aligned_cols=88 Identities=15% Similarity=0.088 Sum_probs=50.6
Q ss_pred cHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC--CCCC
Q 019408 5 GIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--FGSD 82 (341)
Q Consensus 5 G~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--ygsp 82 (341)
|...++.++..|+ +|+..|.+++..+.+.+... . .+.....+...+ .+.. ..+|+|+--- .+.+
T Consensus 179 G~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~~~g---~------~v~~~~~~~~~l-~~~l---~~aDvVI~a~~~~g~~ 244 (370)
T TIGR00518 179 GTNAAKMANGLGA-TVTILDINIDRLRQLDAEFG---G------RIHTRYSNAYEI-EDAV---KRADLLIGAVLIPGAK 244 (370)
T ss_pred HHHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcC---c------eeEeccCCHHHH-HHHH---ccCCEEEEccccCCCC
Confidence 4444555665688 59999999987766554332 1 111112222222 2221 2589998653 2332
Q ss_pred HH--HHHHHHHhcccCCEEEEEecCC
Q 019408 83 SS--FLRTVFNAVKRDGLLYLTSTDG 106 (341)
Q Consensus 83 ~~--fld~al~~v~~gGlL~vt~TD~ 106 (341)
.| +....++.++++++++-.+.|.
T Consensus 245 ~p~lit~~~l~~mk~g~vIvDva~d~ 270 (370)
T TIGR00518 245 APKLVSNSLVAQMKPGAVIVDVAIDQ 270 (370)
T ss_pred CCcCcCHHHHhcCCCCCEEEEEecCC
Confidence 23 2366778899999888666665
No 382
>PRK08589 short chain dehydrogenase; Validated
Probab=59.91 E-value=1.4e+02 Score=27.38 Aligned_cols=69 Identities=17% Similarity=0.044 Sum_probs=36.2
Q ss_pred ccccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccH------HHHHHHhhhcCCccc
Q 019408 2 CGCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDA------NRVLSECYLKREFFD 72 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA------~~~l~~~~~~~~~fD 72 (341)
.|||..|...++. .|+ +|++++.++. .+.+.+.++..+ .++.++..|. ..++......-.+.|
T Consensus 13 Gas~gIG~aia~~l~~~G~-~vi~~~r~~~-~~~~~~~~~~~~------~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id 84 (272)
T PRK08589 13 GASTGIGQASAIALAQEGA-YVLAVDIAEA-VSETVDKIKSNG------GKAKAYHVDISDEQQVKDFASEIKEQFGRVD 84 (272)
T ss_pred CCCchHHHHHHHHHHHCCC-EEEEEeCcHH-HHHHHHHHHhcC------CeEEEEEeecCCHHHHHHHHHHHHHHcCCcC
Confidence 3566667665543 465 6889999844 333334443322 1334444443 233433332223579
Q ss_pred EEEeCC
Q 019408 73 LIDIDS 78 (341)
Q Consensus 73 vIdlDP 78 (341)
+++...
T Consensus 85 ~li~~A 90 (272)
T PRK08589 85 VLFNNA 90 (272)
T ss_pred EEEECC
Confidence 887665
No 383
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=59.30 E-value=50 Score=32.13 Aligned_cols=85 Identities=13% Similarity=0.166 Sum_probs=49.1
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
+.|...+.+|+..|+. |+++|.+++-...+. +..+.+ . .+...+... +.+.. + .+|+|+ |.-|.+
T Consensus 194 ~vG~~avq~Ak~~Ga~-vi~~~~~~~~~~~~~---~~~Ga~-----~-vi~~~~~~~-~~~~~--~-~~D~vi-d~~g~~ 258 (360)
T PLN02586 194 GLGHVAVKIGKAFGLK-VTVISSSSNKEDEAI---NRLGAD-----S-FLVSTDPEK-MKAAI--G-TMDYII-DTVSAV 258 (360)
T ss_pred HHHHHHHHHHHHCCCE-EEEEeCCcchhhhHH---HhCCCc-----E-EEcCCCHHH-HHhhc--C-CCCEEE-ECCCCH
Confidence 4566667788877874 777777754322221 123431 1 111122222 22221 2 489776 887754
Q ss_pred HHHHHHHHHhcccCCEEEEEe
Q 019408 83 SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~vt~ 103 (341)
..++.++++++++|-+.+-.
T Consensus 259 -~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 259 -HALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred -HHHHHHHHHhcCCcEEEEeC
Confidence 56788999999999888543
No 384
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=59.25 E-value=59 Score=31.99 Aligned_cols=83 Identities=18% Similarity=0.230 Sum_probs=49.0
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHH-HHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAH-RRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A-~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
+.|...+.+|+..|+. |+++|.+++. .+.++ ..+.+ . .+...+... +.+.. + .+|+|+ |.-|.
T Consensus 189 ~vG~~avq~Ak~~Ga~-Vi~~~~~~~~~~~~a~----~lGa~-----~-~i~~~~~~~-v~~~~--~-~~D~vi-d~~G~ 252 (375)
T PLN02178 189 GLGHIAVKIGKAFGLR-VTVISRSSEKEREAID----RLGAD-----S-FLVTTDSQK-MKEAV--G-TMDFII-DTVSA 252 (375)
T ss_pred HHHHHHHHHHHHcCCe-EEEEeCChHHhHHHHH----hCCCc-----E-EEcCcCHHH-HHHhh--C-CCcEEE-ECCCc
Confidence 4566667888878884 8888887654 33332 24542 2 121222222 22221 2 478664 66665
Q ss_pred CHHHHHHHHHhcccCCEEEEE
Q 019408 82 DSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 82 p~~fld~al~~v~~gGlL~vt 102 (341)
+ .-++.++++++++|-+..-
T Consensus 253 ~-~~~~~~~~~l~~~G~iv~v 272 (375)
T PLN02178 253 E-HALLPLFSLLKVSGKLVAL 272 (375)
T ss_pred H-HHHHHHHHhhcCCCEEEEE
Confidence 3 3577889999999988853
No 385
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=59.15 E-value=11 Score=27.89 Aligned_cols=35 Identities=20% Similarity=0.462 Sum_probs=26.3
Q ss_pred CCCCCcceehhHHHhhcCCCC-CCHHHHHHHHHHCCCEE
Q 019408 272 PRLPFGYIKLDEMASRAKMNS-PSLKTMMSAVQKEGYVA 309 (341)
Q Consensus 272 ~~~pp~yy~~~~l~~~~k~~~-p~~~~~~~~L~~~Gy~a 309 (341)
...|| ++.+|++.+++++ .+....+.+|++.||--
T Consensus 22 ~G~~P---t~rEIa~~~g~~S~~tv~~~L~~Le~kG~I~ 57 (65)
T PF01726_consen 22 NGYPP---TVREIAEALGLKSTSTVQRHLKALERKGYIR 57 (65)
T ss_dssp HSS------HHHHHHHHTSSSHHHHHHHHHHHHHTTSEE
T ss_pred cCCCC---CHHHHHHHhCCCChHHHHHHHHHHHHCcCcc
Confidence 34566 6899999999985 55588999999999964
No 386
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=59.08 E-value=11 Score=33.26 Aligned_cols=33 Identities=21% Similarity=0.495 Sum_probs=22.2
Q ss_pred cEEEeCC-CCCCHH----------------------HHHHHHHhcccCCEEEEEec
Q 019408 72 DLIDIDS-FGSDSS----------------------FLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 72 DvIdlDP-ygsp~~----------------------fld~al~~v~~gGlL~vt~T 104 (341)
|+|+.|| |+.... ++..+.+.|+++|.+++...
T Consensus 2 dliitDPPY~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~rvLk~~g~~~i~~~ 57 (231)
T PF01555_consen 2 DLIITDPPYNIGKDYNNYFDYGDNKNHEEYLEWMEEWLKECYRVLKPGGSIFIFID 57 (231)
T ss_dssp EEEEE---TSSSCS-----CSCHCCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred CEEEECCCCCCCCCcchhhhccCCCCHHHHHHHHHHHHHHHHhhcCCCeeEEEEec
Confidence 8999999 754222 23477789999999999654
No 387
>PRK07890 short chain dehydrogenase; Provisional
Probab=58.83 E-value=1.4e+02 Score=26.84 Aligned_cols=70 Identities=10% Similarity=-0.013 Sum_probs=38.6
Q ss_pred ccccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHH------HHHHHhhhcCCccc
Q 019408 2 CGCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDAN------RVLSECYLKREFFD 72 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~------~~l~~~~~~~~~fD 72 (341)
.|||..|...+.. .|+ +|+..|.++...+.+.+-++..+. ++..+..|.. .++......-...|
T Consensus 12 Ga~~~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~------~~~~~~~D~~~~~~~~~~~~~~~~~~g~~d 84 (258)
T PRK07890 12 GVGPGLGRTLAVRAARAGA-DVVLAARTAERLDEVAAEIDDLGR------RALAVPTDITDEDQCANLVALALERFGRVD 84 (258)
T ss_pred CCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhCC------ceEEEecCCCCHHHHHHHHHHHHHHcCCcc
Confidence 4667777655443 576 699999998776666555543221 3344444442 22333222223578
Q ss_pred EEEeCC
Q 019408 73 LIDIDS 78 (341)
Q Consensus 73 vIdlDP 78 (341)
+|+.-.
T Consensus 85 ~vi~~a 90 (258)
T PRK07890 85 ALVNNA 90 (258)
T ss_pred EEEECC
Confidence 886654
No 388
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=58.82 E-value=29 Score=32.44 Aligned_cols=87 Identities=17% Similarity=0.152 Sum_probs=58.2
Q ss_pred ccccHhHHHHhhhC-CCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 2 CGCGIRSLRYLAEA-KADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 2 agsG~rgir~a~e~-ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
||+|. +=+++.++ ....|+.+|.|++-++-.++-+- ++++..+|...+ .....+|+|+-.- |
T Consensus 39 CGpGn-sTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp----------~~~f~~aDl~~w-----~p~~~~dllfaNAvl 102 (257)
T COG4106 39 CGPGN-STELLARRWPDAVITGIDSSPAMLAKAAQRLP----------DATFEEADLRTW-----KPEQPTDLLFANAVL 102 (257)
T ss_pred CCCCH-HHHHHHHhCCCCeEeeccCCHHHHHHHHHhCC----------CCceecccHhhc-----CCCCccchhhhhhhh
Confidence 56665 34444443 34579999999998887754221 345678888754 3345789988775 3
Q ss_pred CCC---HHHHHHHHHhcccCCEEEEEec
Q 019408 80 GSD---SSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 80 gsp---~~fld~al~~v~~gGlL~vt~T 104 (341)
..- ...+.+-+..|.+||.|.|.--
T Consensus 103 qWlpdH~~ll~rL~~~L~Pgg~LAVQmP 130 (257)
T COG4106 103 QWLPDHPELLPRLVSQLAPGGVLAVQMP 130 (257)
T ss_pred hhccccHHHHHHHHHhhCCCceEEEECC
Confidence 221 1456677888999999999654
No 389
>PRK06914 short chain dehydrogenase; Provisional
Probab=58.50 E-value=1.4e+02 Score=27.22 Aligned_cols=72 Identities=14% Similarity=0.082 Sum_probs=41.5
Q ss_pred ccccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHH-----HHHhhhcCCcccE
Q 019408 2 CGCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRV-----LSECYLKREFFDL 73 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~-----l~~~~~~~~~fDv 73 (341)
.|||..|...+.+ .|+ +|++.+.+++..+.+.+.+...+.. .+++++..|..+. +.+....-.+.|+
T Consensus 10 Gasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~----~~~~~~~~D~~d~~~~~~~~~~~~~~~~id~ 84 (280)
T PRK06914 10 GASSGFGLLTTLELAKKGY-LVIATMRNPEKQENLLSQATQLNLQ----QNIKVQQLDVTDQNSIHNFQLVLKEIGRIDL 84 (280)
T ss_pred CCCchHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhcCCC----CceeEEecCCCCHHHHHHHHHHHHhcCCeeE
Confidence 4677777776543 565 5888999988777766655543321 2455555555332 2222111235688
Q ss_pred EEeCC
Q 019408 74 IDIDS 78 (341)
Q Consensus 74 IdlDP 78 (341)
|+.-+
T Consensus 85 vv~~a 89 (280)
T PRK06914 85 LVNNA 89 (280)
T ss_pred EEECC
Confidence 87765
No 390
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=58.45 E-value=69 Score=30.36 Aligned_cols=87 Identities=17% Similarity=0.177 Sum_probs=52.7
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
+.|...++.|+..|+..|+..+.+++..+.+++ .+.. .+-..+.+..+-+... ..+..+|+|+ |..|.
T Consensus 170 ~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~----~g~~-----~~~~~~~~~~~~~~~~-~~~~~~d~vl-d~~g~- 237 (343)
T cd08236 170 TIGLLAIQWLKILGAKRVIAVDIDDEKLAVARE----LGAD-----DTINPKEEDVEKVREL-TEGRGADLVI-EAAGS- 237 (343)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCC-----EEecCccccHHHHHHH-hCCCCCCEEE-ECCCC-
Confidence 346677888887888778888888887776643 2331 1111111112222222 2234589775 55443
Q ss_pred HHHHHHHHHhcccCCEEEE
Q 019408 83 SSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~v 101 (341)
...+..++++++++|.+..
T Consensus 238 ~~~~~~~~~~l~~~G~~v~ 256 (343)
T cd08236 238 PATIEQALALARPGGKVVL 256 (343)
T ss_pred HHHHHHHHHHhhcCCEEEE
Confidence 2567888999999998775
No 391
>PRK06949 short chain dehydrogenase; Provisional
Probab=58.04 E-value=1.4e+02 Score=26.75 Aligned_cols=70 Identities=11% Similarity=0.060 Sum_probs=41.0
Q ss_pred ccccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccH------HHHHHHhhhcCCccc
Q 019408 2 CGCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDA------NRVLSECYLKREFFD 72 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA------~~~l~~~~~~~~~fD 72 (341)
.|||..|...+.+ .|+ +|++.+.+++..+-+...++..+ .++.++..|+ .+++.+........|
T Consensus 16 Gasg~IG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d 88 (258)
T PRK06949 16 GASSGLGARFAQVLAQAGA-KVVLASRRVERLKELRAEIEAEG------GAAHVVSLDVTDYQSIKAAVAHAETEAGTID 88 (258)
T ss_pred CCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC------CcEEEEEecCCCHHHHHHHHHHHHHhcCCCC
Confidence 4677777776654 466 69999999888777766664322 1344454444 333333322233578
Q ss_pred EEEeCC
Q 019408 73 LIDIDS 78 (341)
Q Consensus 73 vIdlDP 78 (341)
+|+.-.
T Consensus 89 ~li~~a 94 (258)
T PRK06949 89 ILVNNS 94 (258)
T ss_pred EEEECC
Confidence 776543
No 392
>PRK07035 short chain dehydrogenase; Provisional
Probab=57.93 E-value=1.4e+02 Score=26.74 Aligned_cols=37 Identities=5% Similarity=-0.102 Sum_probs=26.1
Q ss_pred ccccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHHH
Q 019408 2 CGCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLKS 39 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~~ 39 (341)
.|||..|...+.+ .|+ +|++.|.++...+.+.+.+..
T Consensus 15 Gas~gIG~~l~~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~ 54 (252)
T PRK07035 15 GASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAVADAIVA 54 (252)
T ss_pred CCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHh
Confidence 3566666665543 576 799999998887777666653
No 393
>PRK12939 short chain dehydrogenase; Provisional
Probab=57.78 E-value=1.3e+02 Score=26.75 Aligned_cols=68 Identities=18% Similarity=0.036 Sum_probs=38.4
Q ss_pred ccccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHH------HHHHhhhcCCccc
Q 019408 2 CGCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANR------VLSECYLKREFFD 72 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~------~l~~~~~~~~~fD 72 (341)
.|+|..|...++. .|+ +|++.+.+++..+.+.+.++..+ .++.++..|..+ ++......-.+.|
T Consensus 14 Ga~g~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 86 (250)
T PRK12939 14 GAARGLGAAFAEALAEAGA-TVAFNDGLAAEARELAAALEAAG------GRAHAIAADLADPASVQRFFDAAAAALGGLD 86 (250)
T ss_pred CCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC------CcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 4677777776553 465 57888999887766655554222 245555555532 2222222223578
Q ss_pred EEEe
Q 019408 73 LIDI 76 (341)
Q Consensus 73 vIdl 76 (341)
+|+.
T Consensus 87 ~vi~ 90 (250)
T PRK12939 87 GLVN 90 (250)
T ss_pred EEEE
Confidence 7754
No 394
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=57.72 E-value=1.1e+02 Score=29.32 Aligned_cols=96 Identities=14% Similarity=0.089 Sum_probs=61.3
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
|.|..-..+++-.|+ ++++.-.+.+-.+.+++ ||.+ +-+.....|-.+...+. .+++-.|++ .||-|.
T Consensus 158 GVGlll~Ql~ra~~a-~tI~~asTaeK~~~ake----nG~~----h~I~y~~eD~v~~V~ki-TngKGVd~v-yDsvG~- 225 (336)
T KOG1197|consen 158 GVGLLLCQLLRAVGA-HTIATASTAEKHEIAKE----NGAE----HPIDYSTEDYVDEVKKI-TNGKGVDAV-YDSVGK- 225 (336)
T ss_pred cHHHHHHHHHHhcCc-EEEEEeccHHHHHHHHh----cCCc----ceeeccchhHHHHHHhc-cCCCCceee-eccccc-
Confidence 444444555554444 56777666666666666 6663 44566778887777665 345567765 699886
Q ss_pred HHHHHHHHHhcccCCEEEEEecCCCCCCCC
Q 019408 83 SSFLRTVFNAVKRDGLLYLTSTDGYSSGGH 112 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~vt~TD~~~l~g~ 112 (341)
.-+...+.+||++|.+. +.-..+-+.+.
T Consensus 226 -dt~~~sl~~Lk~~G~mV-SfG~asgl~~p 253 (336)
T KOG1197|consen 226 -DTFAKSLAALKPMGKMV-SFGNASGLIDP 253 (336)
T ss_pred -hhhHHHHHHhccCceEE-EeccccCCCCC
Confidence 55667899999999987 34433333333
No 395
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=57.04 E-value=12 Score=25.25 Aligned_cols=42 Identities=17% Similarity=0.417 Sum_probs=33.6
Q ss_pred HHHHHHHhhcccCCCCCCcceehhHHHhhcCCCCCCHHHHHHHHHHCCC
Q 019408 259 LEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNSPSLKTMMSAVQKEGY 307 (341)
Q Consensus 259 ~~~ll~~~~~e~~~~~pp~yy~~~~l~~~~k~~~p~~~~~~~~L~~~Gy 307 (341)
-.++|..+.+. | -.+..+||..++++.+.....+..|.+.||
T Consensus 5 ~~~Il~~l~~~-----~--~~t~~ela~~~~is~~tv~~~l~~L~~~g~ 46 (48)
T PF13412_consen 5 QRKILNYLREN-----P--RITQKELAEKLGISRSTVNRYLKKLEEKGL 46 (48)
T ss_dssp HHHHHHHHHHC-----T--TS-HHHHHHHHTS-HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHc-----C--CCCHHHHHHHhCCCHHHHHHHHHHHHHCcC
Confidence 46777777742 2 278999999999999999999999999998
No 396
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=56.90 E-value=1.5e+02 Score=26.84 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHHHHhcCCcEE
Q 019408 134 IGLRMLIGGAVREASAQGYHVS 155 (341)
Q Consensus 134 ~~lR~ll~~i~~~Aa~~~~~i~ 155 (341)
.+++-+...++..-+.+|..+-
T Consensus 162 aal~~l~~~la~el~~~gI~vn 183 (252)
T PRK06079 162 AALESSVRYLARDLGKKGIRVN 183 (252)
T ss_pred HHHHHHHHHHHHHhhhcCcEEE
Confidence 6777787777777766654443
No 397
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=56.84 E-value=31 Score=27.37 Aligned_cols=62 Identities=18% Similarity=-0.030 Sum_probs=39.7
Q ss_pred ccccHhHHHHhhh--CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHH--HHHhhhcCCcccEEEeC
Q 019408 2 CGCGIRSLRYLAE--AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRV--LSECYLKREFFDLIDID 77 (341)
Q Consensus 2 agsG~rgir~a~e--~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~--l~~~~~~~~~fDvIdlD 77 (341)
.|.|-+|...+.. .+...|+.+|.+++.++.+++ .+ +.++.+|+.+. |.+.. -+..|.|++.
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~----~~--------~~~i~gd~~~~~~l~~a~--i~~a~~vv~~ 69 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE----EG--------VEVIYGDATDPEVLERAG--IEKADAVVIL 69 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----TT--------SEEEES-TTSHHHHHHTT--GGCESEEEEE
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh----cc--------cccccccchhhhHHhhcC--ccccCEEEEc
Confidence 5778888877765 344579999999999887765 22 34677887654 44432 2467755554
No 398
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=56.53 E-value=83 Score=29.77 Aligned_cols=87 Identities=13% Similarity=0.124 Sum_probs=54.8
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccE-EEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRW-VVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~-~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
+.|...+++|+..|+ +|++.+.+++-.+.+++ .+. +.+ .....|..+.+.+. ..++.+|+|+-+..+.
T Consensus 177 ~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~----~g~-----~~v~~~~~~~~~~~~~~~-~~~~~vd~vl~~~~~~ 245 (341)
T cd08297 177 GLGHLGVQYAKAMGL-RVIAIDVGDEKLELAKE----LGA-----DAFVDFKKSDDVEAVKEL-TGGGGAHAVVVTAVSA 245 (341)
T ss_pred hHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHH----cCC-----cEEEcCCCccHHHHHHHH-hcCCCCCEEEEcCCch
Confidence 367788888887777 68888888876666532 333 122 11122333334333 2245699887666432
Q ss_pred CHHHHHHHHHhcccCCEEEEE
Q 019408 82 DSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 82 p~~fld~al~~v~~gGlL~vt 102 (341)
..++.+++.++.+|.+...
T Consensus 246 --~~~~~~~~~l~~~g~~v~~ 264 (341)
T cd08297 246 --AAYEQALDYLRPGGTLVCV 264 (341)
T ss_pred --HHHHHHHHHhhcCCEEEEe
Confidence 5677889999999999864
No 399
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=56.35 E-value=21 Score=31.32 Aligned_cols=100 Identities=23% Similarity=0.224 Sum_probs=58.4
Q ss_pred cccHhHHHH--hhhCC-CCEEE--EeeCCHHHHHH---HHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEE
Q 019408 3 GCGIRSLRY--LAEAK-ADFVM--ANDGNDAHRRV---ILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLI 74 (341)
Q Consensus 3 gsG~rgir~--a~e~g-a~~V~--~~Dis~~A~~~---i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvI 74 (341)
|=|-+|.-. +.+.+ +..++ ..|...+..+- ..+|++.+.-. .-......||.++-........+||.|
T Consensus 4 GeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~----g~~V~~~VDat~l~~~~~~~~~~FDrI 79 (166)
T PF10354_consen 4 GEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELREL----GVTVLHGVDATKLHKHFRLKNQRFDRI 79 (166)
T ss_pred eccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhc----CCccccCCCCCcccccccccCCcCCEE
Confidence 334444443 33334 55554 45665544443 33677654221 112345678887765544456789955
Q ss_pred E-eCC-CCC---------------CHHHHHHHHHhcccCCEEEEEecCC
Q 019408 75 D-IDS-FGS---------------DSSFLRTVFNAVKRDGLLYLTSTDG 106 (341)
Q Consensus 75 d-lDP-ygs---------------p~~fld~al~~v~~gGlL~vt~TD~ 106 (341)
+ -=| -|. -..|+.+|-+.++++|.+.||--++
T Consensus 80 iFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~ 128 (166)
T PF10354_consen 80 IFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDG 128 (166)
T ss_pred EEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 4 447 451 1256779999999999999987544
No 400
>PRK06194 hypothetical protein; Provisional
Probab=56.29 E-value=1.6e+02 Score=27.05 Aligned_cols=70 Identities=7% Similarity=-0.022 Sum_probs=39.1
Q ss_pred ccccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHH------HHHHhhhcCCccc
Q 019408 2 CGCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANR------VLSECYLKREFFD 72 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~------~l~~~~~~~~~fD 72 (341)
.|+|..|...+.+ .|+ +|++.|.+++..+-+.+.+...+ .++.++..|+.+ ++..........|
T Consensus 13 GasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~d~~~~~~~~~~~~~~~g~id 85 (287)
T PRK06194 13 GAASGFGLAFARIGAALGM-KLVLADVQQDALDRAVAELRAQG------AEVLGVRTDVSDAAQVEALADAALERFGAVH 85 (287)
T ss_pred CCccHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcC------CeEEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence 4677777766554 565 68999998876655544443222 234556666432 2222222223578
Q ss_pred EEEeCC
Q 019408 73 LIDIDS 78 (341)
Q Consensus 73 vIdlDP 78 (341)
+|+--.
T Consensus 86 ~vi~~A 91 (287)
T PRK06194 86 LLFNNA 91 (287)
T ss_pred EEEECC
Confidence 876544
No 401
>PRK08324 short chain dehydrogenase; Validated
Probab=56.02 E-value=1.8e+02 Score=31.20 Aligned_cols=36 Identities=14% Similarity=0.039 Sum_probs=25.0
Q ss_pred ccccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHH
Q 019408 2 CGCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLK 38 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~ 38 (341)
.|+|..|...+.. .|+ +|+++|.++...+.+.+.+.
T Consensus 429 GasggIG~~la~~L~~~Ga-~Vvl~~r~~~~~~~~~~~l~ 467 (681)
T PRK08324 429 GAAGGIGKATAKRLAAEGA-CVVLADLDEEAAEAAAAELG 467 (681)
T ss_pred cCCCHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHh
Confidence 3577777766543 576 69999999987766655443
No 402
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=55.98 E-value=62 Score=31.51 Aligned_cols=79 Identities=19% Similarity=0.123 Sum_probs=51.7
Q ss_pred cccHhHHHHhhhC-CCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhh-cCCcccEEEeCCCC
Q 019408 3 GCGIRSLRYLAEA-KADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYL-KREFFDLIDIDSFG 80 (341)
Q Consensus 3 gsG~rgir~a~e~-ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~-~~~~fDvIdlDPyg 80 (341)
|-|.=+=..++.. +..+++++|.|+.|++..++-+..++ +++++++..-..+...+.. .-.++|=|.+|= |
T Consensus 33 G~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~------~r~~~v~~~F~~l~~~l~~~~i~~vDGiL~DL-G 105 (314)
T COG0275 33 GAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD------GRVTLVHGNFANLAEALKELGIGKVDGILLDL-G 105 (314)
T ss_pred CCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC------CcEEEEeCcHHHHHHHHHhcCCCceeEEEEec-c
Confidence 3455555555542 34679999999999999999888654 3677777765444433322 235799999997 2
Q ss_pred CCHHHHHH
Q 019408 81 SDSSFLRT 88 (341)
Q Consensus 81 sp~~fld~ 88 (341)
=.++.||.
T Consensus 106 VSS~QLD~ 113 (314)
T COG0275 106 VSSPQLDD 113 (314)
T ss_pred CCccccCC
Confidence 23366653
No 403
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets. The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....
Probab=55.61 E-value=23 Score=24.51 Aligned_cols=45 Identities=11% Similarity=0.262 Sum_probs=33.9
Q ss_pred HHHHHHHhhcccCCCCCCcceehhHHHhhcCCCCCCHHHHHHHHHHCCCEE
Q 019408 259 LEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNSPSLKTMMSAVQKEGYVA 309 (341)
Q Consensus 259 ~~~ll~~~~~e~~~~~pp~yy~~~~l~~~~k~~~p~~~~~~~~L~~~Gy~a 309 (341)
..++|..+.+. + + +.+..+||..++++......-++.|++.|+..
T Consensus 2 ~~~il~~L~~~---~-~--~it~~eLa~~l~vS~rTi~~~i~~L~~~~~~I 46 (55)
T PF08279_consen 2 QKQILKLLLES---K-E--PITAKELAEELGVSRRTIRRDIKELREWGIPI 46 (55)
T ss_dssp HHHHHHHHHHT---T-T--SBEHHHHHHHCTS-HHHHHHHHHHHHHTT-EE
T ss_pred HHHHHHHHHHc---C-C--CcCHHHHHHHhCCCHHHHHHHHHHHHHCCCeE
Confidence 56677777532 1 2 38999999999998888888899999999554
No 404
>COG1400 SEC65 Signal recognition particle 19 kDa protein [Intracellular trafficking and secretion]
Probab=55.36 E-value=9.4 Score=30.55 Aligned_cols=27 Identities=19% Similarity=0.378 Sum_probs=22.7
Q ss_pred HHhhcCCCCCCHHHHHHHHHHCCCEEe
Q 019408 284 MASRAKMNSPSLKTMMSAVQKEGYVAS 310 (341)
Q Consensus 284 l~~~~k~~~p~~~~~~~~L~~~Gy~as 310 (341)
+.+.+-+..|+.+++.++|+++||...
T Consensus 23 vpk~laV~~P~~~ei~~a~~~LGl~~~ 49 (93)
T COG1400 23 VPKELAVENPSLEEIAEALRELGLKPK 49 (93)
T ss_pred cchhhcccCCCHHHHHHHHHHcCCCee
Confidence 345556778999999999999999985
No 405
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=55.34 E-value=88 Score=29.57 Aligned_cols=87 Identities=15% Similarity=0.115 Sum_probs=53.0
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEE-EEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWV-VTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~-v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
+.|...++.|+..|+..|++.+.+++-.+.+++ .+.. .+. ....+..+.+... ..++.+|+| +|..+.
T Consensus 176 ~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~----~g~~-----~~~~~~~~~~~~~i~~~-~~~~~vd~v-ld~~~~ 244 (343)
T cd08235 176 PIGLLHAMLAKASGARKVIVSDLNEFRLEFAKK----LGAD-----YTIDAAEEDLVEKVREL-TDGRGADVV-IVATGS 244 (343)
T ss_pred HHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCc-----EEecCCccCHHHHHHHH-hCCcCCCEE-EECCCC
Confidence 456677788887788768888888887776642 2331 111 1112222223222 223458976 477553
Q ss_pred CHHHHHHHHHhcccCCEEEE
Q 019408 82 DSSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 82 p~~fld~al~~v~~gGlL~v 101 (341)
. ..+..+++.++.+|-+..
T Consensus 245 ~-~~~~~~~~~l~~~g~~v~ 263 (343)
T cd08235 245 P-EAQAQALELVRKGGRILF 263 (343)
T ss_pred h-HHHHHHHHHhhcCCEEEE
Confidence 2 578888999999998775
No 406
>PLN02780 ketoreductase/ oxidoreductase
Probab=55.10 E-value=2e+02 Score=27.57 Aligned_cols=37 Identities=5% Similarity=-0.068 Sum_probs=28.3
Q ss_pred ccccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHHH
Q 019408 2 CGCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLKS 39 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~~ 39 (341)
.|||..|-.++.+ .|+ +|++.+.|++..+.+.+.++.
T Consensus 60 GAs~GIG~alA~~La~~G~-~Vil~~R~~~~l~~~~~~l~~ 99 (320)
T PLN02780 60 GPTDGIGKGFAFQLARKGL-NLVLVARNPDKLKDVSDSIQS 99 (320)
T ss_pred CCCcHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHHHHH
Confidence 4677777777665 576 589999999988888777764
No 407
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=54.75 E-value=64 Score=30.56 Aligned_cols=82 Identities=16% Similarity=0.212 Sum_probs=46.5
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHH-HHHHHhhhcCCcccEEEeCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDAN-RVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~-~~l~~~~~~~~~fDvIdlDPygs 81 (341)
+.|...+++|+..|+. |++.+.+. -.+.+ +..++ + ..+...+.. .-+. ...+..+|+|+ |..|.
T Consensus 189 ~ig~~~~~~a~~~g~~-vi~~~~~~-~~~~~----~~~g~-----~-~~~~~~~~~~~~~~--~~~~~~~d~vi-~~~g~ 253 (350)
T cd08274 189 GVGSALVQLAKRRGAI-VIAVAGAA-KEEAV----RALGA-----D-TVILRDAPLLADAK--ALGGEPVDVVA-DVVGG 253 (350)
T ss_pred HHHHHHHHHHHhcCCE-EEEEeCch-hhHHH----HhcCC-----e-EEEeCCCccHHHHH--hhCCCCCcEEE-ecCCH
Confidence 3456667778777876 66666443 23333 32443 1 111122111 1121 12345699876 88764
Q ss_pred CHHHHHHHHHhcccCCEEEE
Q 019408 82 DSSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 82 p~~fld~al~~v~~gGlL~v 101 (341)
+.++.+++.++.+|-+..
T Consensus 254 --~~~~~~~~~l~~~G~~v~ 271 (350)
T cd08274 254 --PLFPDLLRLLRPGGRYVT 271 (350)
T ss_pred --HHHHHHHHHhccCCEEEE
Confidence 567889999999998764
No 408
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=54.23 E-value=9.5 Score=25.28 Aligned_cols=32 Identities=16% Similarity=0.327 Sum_probs=29.0
Q ss_pred ceehhHHHhhcCCCCCCHHHHHHHHHHCCCEE
Q 019408 278 YIKLDEMASRAKMNSPSLKTMMSAVQKEGYVA 309 (341)
Q Consensus 278 yy~~~~l~~~~k~~~p~~~~~~~~L~~~Gy~a 309 (341)
.-+..+|+..++++.+.....+..|.+.|+-.
T Consensus 8 ~~s~~~la~~l~~s~~tv~~~l~~L~~~g~l~ 39 (48)
T smart00419 8 PLTRQEIAELLGLTRETVSRTLKRLEKEGLIS 39 (48)
T ss_pred ccCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 36788999999999999999999999999974
No 409
>PRK05867 short chain dehydrogenase; Provisional
Probab=54.22 E-value=1.7e+02 Score=26.40 Aligned_cols=70 Identities=11% Similarity=-0.018 Sum_probs=40.7
Q ss_pred ccccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccH------HHHHHHhhhcCCccc
Q 019408 2 CGCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDA------NRVLSECYLKREFFD 72 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA------~~~l~~~~~~~~~fD 72 (341)
.|||..|...+.. .|+ +|++.+.+++..+.+.+.++..+ .++..+..|. .+++.+....-.+.|
T Consensus 16 Gas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id 88 (253)
T PRK05867 16 GASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSG------GKVVPVCCDVSQHQQVTSMLDQVTAELGGID 88 (253)
T ss_pred CCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC------CeEEEEEccCCCHHHHHHHHHHHHHHhCCCC
Confidence 3566667666553 565 58999999988887777665432 1334444443 223333222223679
Q ss_pred EEEeCC
Q 019408 73 LIDIDS 78 (341)
Q Consensus 73 vIdlDP 78 (341)
+++.-+
T Consensus 89 ~lv~~a 94 (253)
T PRK05867 89 IAVCNA 94 (253)
T ss_pred EEEECC
Confidence 887654
No 410
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=54.04 E-value=89 Score=29.13 Aligned_cols=86 Identities=12% Similarity=0.106 Sum_probs=52.5
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEecc-HHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFD-ANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~D-A~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
+.|...++.|+..|+. +++.+.+++-.+.+++ .+.. ..+.....| ..+.+... ..++.+|+|+ |..|.
T Consensus 152 ~~g~~~~~~a~~~g~~-v~~~~~~~~~~~~~~~----~g~~----~~~~~~~~~~~~~~~~~~-~~~~~~d~~i-~~~~~ 220 (334)
T PTZ00354 152 GVGTAAAQLAEKYGAA-TIITTSSEEKVDFCKK----LAAI----ILIRYPDEEGFAPKVKKL-TGEKGVNLVL-DCVGG 220 (334)
T ss_pred hHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHH----cCCc----EEEecCChhHHHHHHHHH-hCCCCceEEE-ECCch
Confidence 4566667788877875 4557777776666643 3431 111111223 34444433 2245688886 77663
Q ss_pred CHHHHHHHHHhcccCCEEEE
Q 019408 82 DSSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 82 p~~fld~al~~v~~gGlL~v 101 (341)
+.++.+++.++++|-++.
T Consensus 221 --~~~~~~~~~l~~~g~~i~ 238 (334)
T PTZ00354 221 --SYLSETAEVLAVDGKWIV 238 (334)
T ss_pred --HHHHHHHHHhccCCeEEE
Confidence 677889999999998875
No 411
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=53.61 E-value=16 Score=35.85 Aligned_cols=33 Identities=18% Similarity=0.065 Sum_probs=26.4
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHH
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILG 35 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~ 35 (341)
|.|+--++-|+.+||++++.+|+|++=.+..++
T Consensus 203 ~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~ 235 (375)
T KOG0022|consen 203 GVGLAVAMGAKAAGASRIIGVDINPDKFEKAKE 235 (375)
T ss_pred hHHHHHHHhHHhcCcccEEEEecCHHHHHHHHh
Confidence 445555566666899999999999999988776
No 412
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation.
Probab=53.43 E-value=19 Score=27.44 Aligned_cols=48 Identities=21% Similarity=0.345 Sum_probs=38.1
Q ss_pred hHHHHHHHhhcccCCCCCCcceehhHHHhhcCCCCCCHHHHHHHHHHCCCEEee
Q 019408 258 DLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNSPSLKTMMSAVQKEGYVASR 311 (341)
Q Consensus 258 ~~~~ll~~~~~e~~~~~pp~yy~~~~l~~~~k~~~p~~~~~~~~L~~~Gy~as~ 311 (341)
+...+|+.+.+. + + -.++.+|++.++++.+....++..|.+.||-...
T Consensus 6 r~~~Il~~l~~~---~-~--~~t~~~ia~~l~i~~~tv~r~l~~L~~~g~l~~~ 53 (91)
T smart00346 6 RGLAVLRALAEE---P-G--GLTLAELAERLGLSKSTAHRLLNTLQELGYVEQD 53 (91)
T ss_pred HHHHHHHHHHhC---C-C--CcCHHHHHHHhCCCHHHHHHHHHHHHHCCCeeec
Confidence 456677777531 1 1 2789999999999999999999999999998764
No 413
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=53.31 E-value=1.7e+02 Score=26.15 Aligned_cols=69 Identities=7% Similarity=-0.123 Sum_probs=35.0
Q ss_pred ccccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHH------HHHHHhhhcCCccc
Q 019408 2 CGCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDAN------RVLSECYLKREFFD 72 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~------~~l~~~~~~~~~fD 72 (341)
.|||..|-..++. .|+.-+.....+++..+.+...++..+ .++..+..|+. +++.+....-.+.|
T Consensus 9 Gas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 82 (248)
T PRK06947 9 GASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRAAG------GRACVVAGDVANEADVIAMFDAVQSAFGRLD 82 (248)
T ss_pred CCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcC------CcEEEEEeccCCHHHHHHHHHHHHHhcCCCC
Confidence 4667677665543 576533334566776666666665332 23444555532 23333222223578
Q ss_pred EEEe
Q 019408 73 LIDI 76 (341)
Q Consensus 73 vIdl 76 (341)
+|+.
T Consensus 83 ~li~ 86 (248)
T PRK06947 83 ALVN 86 (248)
T ss_pred EEEE
Confidence 7763
No 414
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=53.29 E-value=8.5 Score=33.86 Aligned_cols=35 Identities=29% Similarity=0.418 Sum_probs=19.7
Q ss_pred CCcccEEEeCC-CCCCHHHH---HHHHHhcc-cCCEEEEEec
Q 019408 68 REFFDLIDIDS-FGSDSSFL---RTVFNAVK-RDGLLYLTST 104 (341)
Q Consensus 68 ~~~fDvIdlDP-ygsp~~fl---d~al~~v~-~gGlL~vt~T 104 (341)
..+||+|++|| |-+. +-+ ..+++.+. +++-|.+ +|
T Consensus 84 ~~~~d~vv~DPPFl~~-ec~~k~a~ti~~L~k~~~kii~-~T 123 (162)
T PF10237_consen 84 KGKFDVVVIDPPFLSE-ECLTKTAETIRLLLKPGGKIIL-CT 123 (162)
T ss_pred CCCceEEEECCCCCCH-HHHHHHHHHHHHHhCccceEEE-ec
Confidence 34899999999 5432 222 24455554 4444443 44
No 415
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=52.70 E-value=87 Score=28.53 Aligned_cols=84 Identities=12% Similarity=0.133 Sum_probs=50.8
Q ss_pred ccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEE-EeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 4 CGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVV-THFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 4 sG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v-~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
.|...++.++..|+ +|++.+.+++-.+.+++ .++. .+-. ...+..+.+... ..++.+|+|+ |..+.
T Consensus 149 ~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~----~g~~-----~~~~~~~~~~~~~~~~~-~~~~~~d~vl-~~~~~- 215 (320)
T cd05286 149 VGLLLTQWAKALGA-TVIGTVSSEEKAELARA----AGAD-----HVINYRDEDFVERVREI-TGGRGVDVVY-DGVGK- 215 (320)
T ss_pred HHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH----CCCC-----EEEeCCchhHHHHHHHH-cCCCCeeEEE-ECCCc-
Confidence 45555677776676 48888888877666643 3431 2111 111333333332 2234689876 66554
Q ss_pred HHHHHHHHHhcccCCEEEE
Q 019408 83 SSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~v 101 (341)
+.++.+++.++++|-+..
T Consensus 216 -~~~~~~~~~l~~~g~~v~ 233 (320)
T cd05286 216 -DTFEGSLDSLRPRGTLVS 233 (320)
T ss_pred -HhHHHHHHhhccCcEEEE
Confidence 677889999999998774
No 416
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=52.58 E-value=78 Score=33.06 Aligned_cols=101 Identities=13% Similarity=0.079 Sum_probs=54.7
Q ss_pred ccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHc--CCCC---CC--CccEEEEeccHHHHHHH-hhhcCCcccEEE
Q 019408 4 CGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSI--ERGS---GD--EKRWVVTHFDANRVLSE-CYLKREFFDLID 75 (341)
Q Consensus 4 sG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n--~~~~---~~--~~~~~v~~~DA~~~l~~-~~~~~~~fDvId 75 (341)
.|..++..++..|+. |++.|.+++..+.+++ +... .++. ++ +.-.+..-.|..+...+ ..+.-+.+|+|+
T Consensus 175 iGl~Aa~~ak~lGA~-V~v~d~~~~rle~a~~-lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI 252 (511)
T TIGR00561 175 AGLAAIGAANSLGAI-VRAFDTRPEVKEQVQS-MGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQAKEVDIII 252 (511)
T ss_pred HHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHH-cCCeEEeccccccccccccceeecCHHHHHHHHHHHHHHhCCCCEEE
Confidence 355556666667876 9999999998776664 2111 0000 00 00011222233322222 222234699994
Q ss_pred eCC--CCCCHH--HHHHHHHhcccCCEEEEEecCC
Q 019408 76 IDS--FGSDSS--FLRTVFNAVKRDGLLYLTSTDG 106 (341)
Q Consensus 76 lDP--ygsp~~--fld~al~~v~~gGlL~vt~TD~ 106 (341)
-=- -|.++| ..+..++.+|+|+.++=-+.|.
T Consensus 253 ~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~d~ 287 (511)
T TIGR00561 253 TTALIPGKPAPKLITEEMVDSMKAGSVIVDLAAEQ 287 (511)
T ss_pred ECcccCCCCCCeeehHHHHhhCCCCCEEEEeeeCC
Confidence 332 466556 3467799999999988445554
No 417
>PRK07904 short chain dehydrogenase; Provisional
Probab=52.54 E-value=1.8e+02 Score=26.43 Aligned_cols=70 Identities=17% Similarity=0.156 Sum_probs=39.7
Q ss_pred ccccHhHHHHhhh---CCCCEEEEeeCCHHH-HHHHHHHHHHcCCCCCCCccEEEEeccHH------HHHHHhhhcCCcc
Q 019408 2 CGCGIRSLRYLAE---AKADFVMANDGNDAH-RRVILGNLKSIERGSGDEKRWVVTHFDAN------RVLSECYLKREFF 71 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~Dis~~A-~~~i~~N~~~n~~~~~~~~~~~v~~~DA~------~~l~~~~~~~~~f 71 (341)
.|||..|...+.+ .|..+|++.+.+++. .+-+.+.++.++. .+++++..|+. +++.+... ....
T Consensus 15 Gas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~-----~~v~~~~~D~~~~~~~~~~~~~~~~-~g~i 88 (253)
T PRK07904 15 GGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGA-----SSVEVIDFDALDTDSHPKVIDAAFA-GGDV 88 (253)
T ss_pred cCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCC-----CceEEEEecCCChHHHHHHHHHHHh-cCCC
Confidence 5788888887765 344578899988764 5544444554332 13455555542 22333222 2368
Q ss_pred cEEEeC
Q 019408 72 DLIDID 77 (341)
Q Consensus 72 DvIdlD 77 (341)
|+++..
T Consensus 89 d~li~~ 94 (253)
T PRK07904 89 DVAIVA 94 (253)
T ss_pred CEEEEe
Confidence 877653
No 418
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=52.52 E-value=11 Score=32.97 Aligned_cols=83 Identities=23% Similarity=0.105 Sum_probs=43.9
Q ss_pred ccccHhHHHHhhhCC--CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEecc-----HHHHHHHhh-hcCCcccE
Q 019408 2 CGCGIRSLRYLAEAK--ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFD-----ANRVLSECY-LKREFFDL 73 (341)
Q Consensus 2 agsG~rgir~a~e~g--a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~D-----A~~~l~~~~-~~~~~fDv 73 (341)
|+.|.++--++. ++ +.+|+++|+.+.. ..+ .+..+++| ..+.+.+.. ...++||+
T Consensus 32 ~aPGGws~~~~~-~~~~~~~v~avDl~~~~------~~~----------~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dl 94 (181)
T PF01728_consen 32 AAPGGWSQVLLQ-RGGPAGRVVAVDLGPMD------PLQ----------NVSFIQGDITNPENIKDIRKLLPESGEKFDL 94 (181)
T ss_dssp -TTSHHHHHHHT-STTTEEEEEEEESSSTG------S-T----------TEEBTTGGGEEEEHSHHGGGSHGTTTCSESE
T ss_pred Ccccceeeeeee-cccccceEEEEeccccc------ccc----------ceeeeecccchhhHHHhhhhhccccccCcce
Confidence 577888755554 56 6889999999871 111 11222222 222232221 12368999
Q ss_pred EEeCC--CCCC-------------HHHHHHHHHhcccCCEEEE
Q 019408 74 IDIDS--FGSD-------------SSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 74 IdlDP--ygsp-------------~~fld~al~~v~~gGlL~v 101 (341)
|..|= .-+. .+.+.-|++.|++||.+.+
T Consensus 95 v~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~ 137 (181)
T PF01728_consen 95 VLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVI 137 (181)
T ss_dssp EEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEE
T ss_pred eccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEE
Confidence 98885 1111 0222356677999996665
No 419
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=52.49 E-value=94 Score=28.67 Aligned_cols=87 Identities=21% Similarity=0.096 Sum_probs=51.9
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEE-eccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVT-HFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~-~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
+.|...++.|+..|+..|++.+.+++-.+++++ .++. .+-.. ..+..+.+.+. ..+..+|+| +|..|.
T Consensus 140 ~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~-----~~~~~~~~~~~~~l~~~-~~~~~vd~v-ld~~g~ 208 (312)
T cd08269 140 FIGLLFLQLAAAAGARRVIAIDRRPARLALARE----LGAT-----EVVTDDSEAIVERVREL-TGGAGADVV-IEAVGH 208 (312)
T ss_pred HHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCc-----eEecCCCcCHHHHHHHH-cCCCCCCEE-EECCCC
Confidence 456667777887788768888888776664322 2331 11111 12333334332 233468877 555443
Q ss_pred CHHHHHHHHHhcccCCEEEE
Q 019408 82 DSSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 82 p~~fld~al~~v~~gGlL~v 101 (341)
...++.+++.++++|.++.
T Consensus 209 -~~~~~~~~~~l~~~g~~~~ 227 (312)
T cd08269 209 -QWPLDLAGELVAERGRLVI 227 (312)
T ss_pred -HHHHHHHHHHhccCCEEEE
Confidence 2567888999999998885
No 420
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor.
Probab=52.44 E-value=18 Score=24.09 Aligned_cols=31 Identities=10% Similarity=0.378 Sum_probs=28.4
Q ss_pred eehhHHHhhcCCCCCCHHHHHHHHHHCCCEE
Q 019408 279 IKLDEMASRAKMNSPSLKTMMSAVQKEGYVA 309 (341)
Q Consensus 279 y~~~~l~~~~k~~~p~~~~~~~~L~~~Gy~a 309 (341)
.++.+|+..++++.++....+..|.+.|+-.
T Consensus 15 ~s~~~l~~~l~~s~~tv~~~l~~L~~~g~i~ 45 (53)
T smart00420 15 VSVEELAELLGVSEMTIRRDLNKLEEQGLLT 45 (53)
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 6999999999999899999999999999953
No 421
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=52.42 E-value=1.1e+02 Score=28.85 Aligned_cols=85 Identities=12% Similarity=0.119 Sum_probs=52.0
Q ss_pred cccHhHHHHhhhC-CCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 3 GCGIRSLRYLAEA-KADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 3 gsG~rgir~a~e~-ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
+.|...+++|+.. |+ +|++.+.+++-.+.+++ .+.+ .+.....+....+... .+..+|+|+ |.-+.
T Consensus 160 ~vg~~~~~~ak~~~G~-~vi~~~~~~~~~~~l~~----~g~~-----~~~~~~~~~~~~i~~~--~~~~vd~vl-~~~~~ 226 (336)
T TIGR02817 160 GVGSILIQLARQLTGL-TVIATASRPESQEWVLE----LGAH-----HVIDHSKPLKAQLEKL--GLEAVSYVF-SLTHT 226 (336)
T ss_pred HHHHHHHHHHHHhCCC-EEEEEcCcHHHHHHHHH----cCCC-----EEEECCCCHHHHHHHh--cCCCCCEEE-EcCCc
Confidence 4566667778764 65 57888887776666643 3431 2111122443444432 234689876 77543
Q ss_pred CHHHHHHHHHhcccCCEEEE
Q 019408 82 DSSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 82 p~~fld~al~~v~~gGlL~v 101 (341)
. ..++.+++.++++|.++.
T Consensus 227 ~-~~~~~~~~~l~~~G~~v~ 245 (336)
T TIGR02817 227 D-QHFKEIVELLAPQGRFAL 245 (336)
T ss_pred H-HHHHHHHHHhccCCEEEE
Confidence 2 677889999999998874
No 422
>PRK06484 short chain dehydrogenase; Validated
Probab=52.37 E-value=2.7e+02 Score=28.26 Aligned_cols=34 Identities=9% Similarity=-0.032 Sum_probs=24.1
Q ss_pred ccccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHH
Q 019408 2 CGCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGN 36 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N 36 (341)
.|||..|...+.+ .|+ +|++.|.+++..+.+.+.
T Consensus 276 Gas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~ 312 (520)
T PRK06484 276 GGARGIGRAVADRFAAAGD-RLLIIDRDAEGAKKLAEA 312 (520)
T ss_pred CCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHH
Confidence 4677777776654 565 799999998877766543
No 423
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=52.26 E-value=42 Score=29.82 Aligned_cols=13 Identities=15% Similarity=0.110 Sum_probs=10.9
Q ss_pred CCCCEEEEeeCCH
Q 019408 15 AKADFVMANDGND 27 (341)
Q Consensus 15 ~ga~~V~~~Dis~ 27 (341)
.||.+|+.+|-|+
T Consensus 22 ~GA~~iltveyn~ 34 (177)
T PF03269_consen 22 HGAAKILTVEYNK 34 (177)
T ss_pred cCCceEEEEeecc
Confidence 6899999998875
No 424
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=52.09 E-value=42 Score=25.08 Aligned_cols=45 Identities=20% Similarity=0.277 Sum_probs=32.4
Q ss_pred CCCCHHHHHHHHHHCCCEEeee---e---cCCCceecCCC--------HHHHHHHHHhh
Q 019408 291 NSPSLKTMMSAVQKEGYVASRS---H---IASNAIKTNCP--------MVACIRIAKEL 335 (341)
Q Consensus 291 ~~p~~~~~~~~L~~~Gy~as~t---H---~~~~~iKTdAp--------~~~i~~i~~~~ 335 (341)
..-+.++++.+|+..||..+|. | -.|+|.+|--| ..-|.+|+++.
T Consensus 5 p~~~~ke~ik~Le~~Gf~~vrqkGSH~q~kHp~~~~vtVP~Hp~~dl~~Gtl~~Ilkqa 63 (66)
T COG1724 5 PRMKAKEVIKALEKDGFQLVRQKGSHRQYKHPDGGRVTVPFHPGEDLPPGTLRSILKQA 63 (66)
T ss_pred CcCCHHHHHHHHHhCCcEEEEeecceeEEEcCCCCEEEecCCCccccCcHHHHHHHHHh
Confidence 3345689999999999999886 3 34567766554 56677777753
No 425
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=51.98 E-value=1e+02 Score=29.33 Aligned_cols=89 Identities=13% Similarity=0.101 Sum_probs=52.2
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
+.|...++.|+..|+.+|+..+.+++-.+++++ ++.. ..+.....+.. .+.+. ..++.+|+|+ |--|+.
T Consensus 174 ~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----~g~~----~~~~~~~~~~~-~~~~~-~~~~~vd~vl-d~~g~~ 242 (341)
T cd05281 174 PIGLMAIAVAKAAGASLVIASDPNPYRLELAKK----MGAD----VVINPREEDVV-EVKSV-TDGTGVDVVL-EMSGNP 242 (341)
T ss_pred HHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCcc----eeeCcccccHH-HHHHH-cCCCCCCEEE-ECCCCH
Confidence 456677778887787777777888777766654 2331 11111122332 23332 2234688774 443332
Q ss_pred HHHHHHHHHhcccCCEEEEEe
Q 019408 83 SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~vt~ 103 (341)
..++.+++.++++|.+....
T Consensus 243 -~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 243 -KAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred -HHHHHHHHHhccCCEEEEEc
Confidence 45677899999999987543
No 426
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=51.80 E-value=86 Score=30.36 Aligned_cols=84 Identities=23% Similarity=0.266 Sum_probs=49.7
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
+.|...+++|+..|+. |++.+.+++..+.+.+ ..+.. . .+...+... +.+.. ..+|+| +|--|.+
T Consensus 191 ~vG~~av~~Ak~~G~~-vi~~~~~~~~~~~~~~---~~Ga~-----~-~i~~~~~~~-~~~~~---~~~D~v-id~~g~~ 255 (357)
T PLN02514 191 GVGHMGVKIAKAMGHH-VTVISSSDKKREEALE---HLGAD-----D-YLVSSDAAE-MQEAA---DSLDYI-IDTVPVF 255 (357)
T ss_pred HHHHHHHHHHHHCCCe-EEEEeCCHHHHHHHHH---hcCCc-----E-EecCCChHH-HHHhc---CCCcEE-EECCCch
Confidence 4567778888888874 7777777765544432 24441 1 122222222 22221 247865 4665533
Q ss_pred HHHHHHHHHhcccCCEEEEE
Q 019408 83 SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~vt 102 (341)
..++.++++++++|.+...
T Consensus 256 -~~~~~~~~~l~~~G~iv~~ 274 (357)
T PLN02514 256 -HPLEPYLSLLKLDGKLILM 274 (357)
T ss_pred -HHHHHHHHHhccCCEEEEE
Confidence 4677899999999988763
No 427
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=51.79 E-value=71 Score=29.71 Aligned_cols=80 Identities=11% Similarity=0.065 Sum_probs=57.1
Q ss_pred CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEE-EEeccHHHHHHHhhhcCCcccEEEeCC----CCCCHHHHHHHHH
Q 019408 17 ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWV-VTHFDANRVLSECYLKREFFDLIDIDS----FGSDSSFLRTVFN 91 (341)
Q Consensus 17 a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~-v~~~DA~~~l~~~~~~~~~fDvIdlDP----ygsp~~fld~al~ 91 (341)
..+|+++|-|+.--+.+.+-++.+.- .++. .+.+|+..+-. .....||+|+--= --.|...|...-+
T Consensus 99 ~~svt~lDpn~~mee~~~ks~~E~k~-----~~~~~fvva~ge~l~~---l~d~s~DtVV~TlvLCSve~~~k~L~e~~r 170 (252)
T KOG4300|consen 99 INSVTCLDPNEKMEEIADKSAAEKKP-----LQVERFVVADGENLPQ---LADGSYDTVVCTLVLCSVEDPVKQLNEVRR 170 (252)
T ss_pred CceEEEeCCcHHHHHHHHHHHhhccC-----cceEEEEeechhcCcc---cccCCeeeEEEEEEEeccCCHHHHHHHHHH
Confidence 35799999999999999888887743 2454 66777766432 2356899885321 2335677777778
Q ss_pred hcccCCEEEEEec
Q 019408 92 AVKRDGLLYLTST 104 (341)
Q Consensus 92 ~v~~gGlL~vt~T 104 (341)
+|++||.+++-..
T Consensus 171 lLRpgG~iifiEH 183 (252)
T KOG4300|consen 171 LLRPGGRIIFIEH 183 (252)
T ss_pred hcCCCcEEEEEec
Confidence 9999999997554
No 428
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=51.77 E-value=92 Score=29.18 Aligned_cols=88 Identities=13% Similarity=0.145 Sum_probs=53.2
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
+.|...++.|+..|++ |++++.+++-.+.+++ .+.. ..+.....+..+.+... ..+..+|+|+ |..|.
T Consensus 152 ~ig~~~~~lak~~G~~-v~~~~~~~~~~~~~~~----~g~~----~~~~~~~~~~~~~~~~~-~~~~~~d~vl-~~~~~- 219 (327)
T PRK10754 152 GVGLIACQWAKALGAK-LIGTVGSAQKAQRAKK----AGAW----QVINYREENIVERVKEI-TGGKKVRVVY-DSVGK- 219 (327)
T ss_pred HHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHH----CCCC----EEEcCCCCcHHHHHHHH-cCCCCeEEEE-ECCcH-
Confidence 3556667778877875 7888888877766643 3431 11111122333434433 2334589665 87664
Q ss_pred HHHHHHHHHhcccCCEEEEEe
Q 019408 83 SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~vt~ 103 (341)
+-+..+++.++++|-++...
T Consensus 220 -~~~~~~~~~l~~~g~~v~~g 239 (327)
T PRK10754 220 -DTWEASLDCLQRRGLMVSFG 239 (327)
T ss_pred -HHHHHHHHHhccCCEEEEEc
Confidence 55677899999999888533
No 429
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=51.50 E-value=71 Score=28.69 Aligned_cols=38 Identities=5% Similarity=-0.057 Sum_probs=27.1
Q ss_pred ccccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHHHc
Q 019408 2 CGCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLKSI 40 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~~n 40 (341)
.|+|..|...+++ .|+ +|++.|.+++..+.+.+.++..
T Consensus 19 G~~g~iG~~la~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~ 59 (247)
T PRK08945 19 GAGDGIGREAALTYARHGA-TVILLGRTEEKLEAVYDEIEAA 59 (247)
T ss_pred CCCchHHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHhc
Confidence 4677777666543 566 7899999998887777666543
No 430
>PRK06125 short chain dehydrogenase; Provisional
Probab=51.45 E-value=1.9e+02 Score=26.17 Aligned_cols=36 Identities=3% Similarity=-0.080 Sum_probs=24.9
Q ss_pred ccccHhHHHHhh---hCCCCEEEEeeCCHHHHHHHHHHHH
Q 019408 2 CGCGIRSLRYLA---EAKADFVMANDGNDAHRRVILGNLK 38 (341)
Q Consensus 2 agsG~rgir~a~---e~ga~~V~~~Dis~~A~~~i~~N~~ 38 (341)
.|+|..|...+. +.|+ +|++.+.+++..+.+.+.++
T Consensus 14 G~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~ 52 (259)
T PRK06125 14 GASKGIGAAAAEAFAAEGC-HLHLVARDADALEALAADLR 52 (259)
T ss_pred CCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHH
Confidence 356666765543 3677 79999999887776666555
No 431
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=51.40 E-value=1.9e+02 Score=26.19 Aligned_cols=69 Identities=14% Similarity=0.081 Sum_probs=39.9
Q ss_pred ccccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccH------HHHHHHhhhcCCccc
Q 019408 2 CGCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDA------NRVLSECYLKREFFD 72 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA------~~~l~~~~~~~~~fD 72 (341)
.|||..|...+.+ .|+ +|++.|.+++..+.+.+.++..+ ++.++..|. .+++......-...|
T Consensus 7 Gas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~-------~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id 78 (259)
T PRK08340 7 ASSRGIGFNVARELLKKGA-RVVISSRNEENLEKALKELKEYG-------EVYAVKADLSDKDDLKNLVKEAWELLGGID 78 (259)
T ss_pred cCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC-------CceEEEcCCCCHHHHHHHHHHHHHhcCCCC
Confidence 4667777666553 576 58999999887776666554321 233444443 334443322234679
Q ss_pred EEEeCC
Q 019408 73 LIDIDS 78 (341)
Q Consensus 73 vIdlDP 78 (341)
+|+.-.
T Consensus 79 ~li~na 84 (259)
T PRK08340 79 ALVWNA 84 (259)
T ss_pred EEEECC
Confidence 886543
No 432
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=51.06 E-value=1e+02 Score=29.24 Aligned_cols=86 Identities=14% Similarity=0.105 Sum_probs=53.6
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEe-ccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTH-FDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~-~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
+.|...+++|+..|+ +|++.+.+++-.+.+++ .++. ..+.... .|....+.... .+ .+|+|+ |-.|+
T Consensus 176 ~vg~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~----~g~~----~~i~~~~~~~~~~~~~~~~-~~-~~d~vi-~~~g~ 243 (345)
T cd08260 176 GVGLSAVMIASALGA-RVIAVDIDDDKLELARE----LGAV----ATVNASEVEDVAAAVRDLT-GG-GAHVSV-DALGI 243 (345)
T ss_pred HHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHH----hCCC----EEEccccchhHHHHHHHHh-CC-CCCEEE-EcCCC
Confidence 456667888887776 58888888887777743 3442 1111112 24333343332 23 689775 76654
Q ss_pred CHHHHHHHHHhcccCCEEEE
Q 019408 82 DSSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 82 p~~fld~al~~v~~gGlL~v 101 (341)
. ..+..+++.++.+|-++.
T Consensus 244 ~-~~~~~~~~~l~~~g~~i~ 262 (345)
T cd08260 244 P-ETCRNSVASLRKRGRHVQ 262 (345)
T ss_pred H-HHHHHHHHHhhcCCEEEE
Confidence 3 567788999999998775
No 433
>PF13730 HTH_36: Helix-turn-helix domain
Probab=51.05 E-value=11 Score=26.19 Aligned_cols=31 Identities=6% Similarity=0.267 Sum_probs=27.7
Q ss_pred cceehhHHHhhcCCCCCCHHHHHHHHHHCCC
Q 019408 277 GYIKLDEMASRAKMNSPSLKTMMSAVQKEGY 307 (341)
Q Consensus 277 ~yy~~~~l~~~~k~~~p~~~~~~~~L~~~Gy 307 (341)
.|-+...|+..++++.......++.|++.||
T Consensus 24 ~~pS~~~la~~~g~s~~Tv~~~i~~L~~~G~ 54 (55)
T PF13730_consen 24 CFPSQETLAKDLGVSRRTVQRAIKELEEKGL 54 (55)
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCcC
Confidence 3568999999999998888999999999997
No 434
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=51.02 E-value=1.6e+02 Score=26.78 Aligned_cols=19 Identities=16% Similarity=0.122 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHHHHHhcCC
Q 019408 134 IGLRMLIGGAVREASAQGY 152 (341)
Q Consensus 134 ~~lR~ll~~i~~~Aa~~~~ 152 (341)
.+++.|...+++..+.+|.
T Consensus 163 aal~~l~~~la~el~~~gI 181 (256)
T PRK07889 163 AALESTNRYLARDLGPRGI 181 (256)
T ss_pred HHHHHHHHHHHHHhhhcCe
Confidence 6788888888877766543
No 435
>PF09286 Pro-kuma_activ: Pro-kumamolisin, activation domain ; InterPro: IPR015366 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found at the N terminus of peptidases belonging to MEROPS peptidase family S53 (sedolisin, clan SB). The domain adopts a ferredoxin-like fold, with an alpha+beta sandwich. Cleavage of the domain results in activation of the peptidase []. ; GO: 0008236 serine-type peptidase activity; PDB: 1T1E_A 3EDY_A 3EE6_A.
Probab=50.97 E-value=21 Score=30.08 Aligned_cols=57 Identities=12% Similarity=0.137 Sum_probs=44.0
Q ss_pred cceehhHHHhhcCCCCCCHHHHHHHHHHCCCEEeeeecCCCceecCCCHHHHHHHHH
Q 019408 277 GYIKLDEMASRAKMNSPSLKTMMSAVQKEGYVASRSHIASNAIKTNCPMVACIRIAK 333 (341)
Q Consensus 277 ~yy~~~~l~~~~k~~~p~~~~~~~~L~~~Gy~as~tH~~~~~iKTdAp~~~i~~i~~ 333 (341)
-|.+..++.+.++-+.-..+.+.+-|++.|+.+..++-+..-|+-++|...+-.++.
T Consensus 46 k~Lt~~e~~~~~~p~~~~v~~V~~wL~~~G~~~~~~~~~~~~i~~~~tv~~~e~~f~ 102 (143)
T PF09286_consen 46 KYLTPEEFAALFAPSPEDVAAVKSWLKSHGLTVVEVSANGDWITVSGTVAQAERAFG 102 (143)
T ss_dssp ----HHHHHHHHS--HHHHHHHHHHHHHCT-EEEEEETTTTEEEEEEEHHHHHHHCT
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHHHcCCceeEEeCCCCEEEEEEeHHHHHHHhC
Confidence 378999999998754444789999999999999999999999999999998877664
No 436
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=50.96 E-value=89 Score=29.81 Aligned_cols=133 Identities=14% Similarity=0.115 Sum_probs=74.8
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCC-----------------------------------
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGD----------------------------------- 46 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~----------------------------------- 46 (341)
||.|-++.+.|. .|. .|.+||.|--. ++..|.-+|.....+
T Consensus 65 sGLGRLa~Eia~-~G~-~~~gnE~S~~M--ll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~p~~~~ 140 (270)
T PF07942_consen 65 SGLGRLAWEIAK-LGY-AVQGNEFSYFM--LLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVDPSSEL 140 (270)
T ss_pred CCcchHHHHHhh-ccc-eEEEEEchHHH--HHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCcCccccc
Confidence 688889999998 576 58999998543 666777666432000
Q ss_pred --CccEEEEeccHHHHHHHhhhcCCcccEE----EeCCCCCCHHHHHHHHHhcccCCEEEEEecCCCCCCCCCchhHHhh
Q 019408 47 --EKRWVVTHFDANRVLSECYLKREFFDLI----DIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLAS 120 (341)
Q Consensus 47 --~~~~~v~~~DA~~~l~~~~~~~~~fDvI----dlDPygsp~~fld~al~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~ 120 (341)
..+.....+|...+... ......||+| +||==.--..|++..-++||+||+-+ - .|.. +
T Consensus 141 ~~~~~~sm~aGDF~e~y~~-~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WI-N-------~GPL------l 205 (270)
T PF07942_consen 141 PSPSNLSMCAGDFLEVYGP-DENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWI-N-------FGPL------L 205 (270)
T ss_pred CCCCceeEecCccEEecCC-cccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEE-e-------cCCc------c
Confidence 01222333333332211 1113578876 56650001256777788999999544 2 2442 4
Q ss_pred hccccCCCCCchhhhHHHHHHHHHHHHHhcCCcEE
Q 019408 121 YGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVS 155 (341)
Q Consensus 121 Yg~~~~~~~~~~E~~lR~ll~~i~~~Aa~~~~~i~ 155 (341)
||..+.. ...|..+++=...|.+.+.++|..++
T Consensus 206 yh~~~~~--~~~~~sveLs~eEi~~l~~~~GF~~~ 238 (270)
T PF07942_consen 206 YHFEPMS--IPNEMSVELSLEEIKELIEKLGFEIE 238 (270)
T ss_pred ccCCCCC--CCCCcccCCCHHHHHHHHHHCCCEEE
Confidence 5554431 13444555556666777777776654
No 437
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=50.71 E-value=9.5 Score=26.94 Aligned_cols=33 Identities=18% Similarity=0.425 Sum_probs=29.0
Q ss_pred eehhHHHhhcCCCCCCHHHHHHHHHHCCCEEee
Q 019408 279 IKLDEMASRAKMNSPSLKTMMSAVQKEGYVASR 311 (341)
Q Consensus 279 y~~~~l~~~~k~~~p~~~~~~~~L~~~Gy~as~ 311 (341)
.+..+|+..++++.+....+++.|.+.||-.-.
T Consensus 22 ~t~~~la~~l~~~~~~vs~~v~~L~~~Glv~r~ 54 (62)
T PF12802_consen 22 LTQSELAERLGISKSTVSRIVKRLEKKGLVERE 54 (62)
T ss_dssp EEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEE
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 589999999999999999999999999997544
No 438
>PRK06500 short chain dehydrogenase; Provisional
Probab=50.62 E-value=1.8e+02 Score=25.80 Aligned_cols=33 Identities=15% Similarity=-0.002 Sum_probs=21.7
Q ss_pred ccccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHH
Q 019408 2 CGCGIRSLRYLAE---AKADFVMANDGNDAHRRVILG 35 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~ 35 (341)
.|+|..|-..+.+ .|+ +|++.+.+++..+-+.+
T Consensus 13 Gasg~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~ 48 (249)
T PRK06500 13 GGTSGIGLETARQFLAEGA-RVAITGRDPASLEAARA 48 (249)
T ss_pred CCCchHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHH
Confidence 4677777766554 576 68899998765554433
No 439
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=50.48 E-value=30 Score=30.78 Aligned_cols=32 Identities=19% Similarity=0.196 Sum_probs=21.2
Q ss_pred cccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHH
Q 019408 3 GCGIRSLRYLAE---AKADFVMANDGNDAHRRVILG 35 (341)
Q Consensus 3 gsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~ 35 (341)
|.|..|+-.|.. .| -+|+.+|+|++-++.+++
T Consensus 7 GlGyvGl~~A~~lA~~G-~~V~g~D~~~~~v~~l~~ 41 (185)
T PF03721_consen 7 GLGYVGLPLAAALAEKG-HQVIGVDIDEEKVEALNN 41 (185)
T ss_dssp --STTHHHHHHHHHHTT-SEEEEE-S-HHHHHHHHT
T ss_pred CCCcchHHHHHHHHhCC-CEEEEEeCChHHHHHHhh
Confidence 778888877664 34 579999999998877654
No 440
>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is
Probab=50.42 E-value=12 Score=26.46 Aligned_cols=31 Identities=16% Similarity=0.307 Sum_probs=28.0
Q ss_pred ceehhHHHhhcCCCCCCHHHHHHHHHHCCCE
Q 019408 278 YIKLDEMASRAKMNSPSLKTMMSAVQKEGYV 308 (341)
Q Consensus 278 yy~~~~l~~~~k~~~p~~~~~~~~L~~~Gy~ 308 (341)
..+..+||+.++++.+...+.+..|.+.||-
T Consensus 25 ~~~~~~la~~~~is~~~v~~~l~~L~~~G~i 55 (66)
T cd07377 25 LPSERELAEELGVSRTTVREALRELEAEGLV 55 (66)
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCE
Confidence 3468999999999999999999999999993
No 441
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=50.16 E-value=95 Score=29.35 Aligned_cols=87 Identities=20% Similarity=0.189 Sum_probs=52.2
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
+.|...++.|+..|+. |++...+++-.+.+++ .+.. ..+.....+..+.+.... .++.+|+| +|..|..
T Consensus 170 ~vG~~a~~lA~~~g~~-v~~~~~s~~~~~~~~~----~g~~----~v~~~~~~~~~~~l~~~~-~~~~vd~v-ld~~g~~ 238 (337)
T cd08261 170 PIGLGVIQVAKARGAR-VIVVDIDDERLEFARE----LGAD----DTINVGDEDVAARLRELT-DGEGADVV-IDATGNP 238 (337)
T ss_pred HHHHHHHHHHHHcCCe-EEEECCCHHHHHHHHH----hCCC----EEecCcccCHHHHHHHHh-CCCCCCEE-EECCCCH
Confidence 3466778888877764 7788777777776643 2231 111112223333343332 23458987 5666643
Q ss_pred HHHHHHHHHhcccCCEEEE
Q 019408 83 SSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~v 101 (341)
..+..+++.++.+|-++.
T Consensus 239 -~~~~~~~~~l~~~G~~i~ 256 (337)
T cd08261 239 -ASMEEAVELVAHGGRVVL 256 (337)
T ss_pred -HHHHHHHHHHhcCCEEEE
Confidence 677888999998887764
No 442
>PF03537 Glyco_hydro_114: Glycoside-hydrolase family GH114; InterPro: IPR004352 Eighty-one archaeal-like genes, ranging in size from 4-20kb, are clustered in 15 regions of the Thermotoga maritima genome []. Conservation of gene order between T. maritima and Archaea in many of these regions suggests that lateral gene transfer may have occurred between thermophilic Eubacteria and Archaea []. One of the T. maritima sequences (hypothetical protein TM1410) shares similarity with Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1477 and with hypothetical protein DR0705 from Deinococcus radiodurans. The sequences are characterised by relatively variable N- and C-terminal domains, and a more conserved central domain. They share no similarity with any other known, functionally or structurally characterised proteins. ; PDB: 2AAM_F.
Probab=49.99 E-value=17 Score=27.57 Aligned_cols=30 Identities=20% Similarity=0.231 Sum_probs=17.8
Q ss_pred CcccEEEeCCCCCCHHHHHHHHHhcccCCEEEEE
Q 019408 69 EFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 69 ~~fDvIdlDPygsp~~fld~al~~v~~gGlL~vt 102 (341)
..+|++++|||..+.. .++.|+..|...|+
T Consensus 25 ~~~~v~~iD~~~~~~~----~I~~L~~~G~~vic 54 (74)
T PF03537_consen 25 PDVDVVVIDLFDFSKE----EIARLKAQGKKVIC 54 (74)
T ss_dssp SS-SEEEE-SBS--HH----HHHHHHHTT-EEEE
T ss_pred CCCCEEEECCccCCHH----HHHHHHHCCCEEEE
Confidence 4799999999875433 45557777866663
No 443
>PRK05872 short chain dehydrogenase; Provisional
Probab=49.63 E-value=2.2e+02 Score=26.55 Aligned_cols=35 Identities=11% Similarity=-0.041 Sum_probs=24.8
Q ss_pred ccccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHH
Q 019408 2 CGCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNL 37 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~ 37 (341)
.|||..|...+.+ .|+ +|+..+.+++..+.+.+.+
T Consensus 16 Gas~gIG~~ia~~l~~~G~-~V~~~~r~~~~l~~~~~~l 53 (296)
T PRK05872 16 GAARGIGAELARRLHARGA-KLALVDLEEAELAALAAEL 53 (296)
T ss_pred CCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh
Confidence 4677777776654 576 6899999988776665544
No 444
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=48.99 E-value=21 Score=35.78 Aligned_cols=33 Identities=27% Similarity=0.270 Sum_probs=27.9
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHH
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILG 35 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~ 35 (341)
+++|-+.+-|+. .+.++|++||+||.=..+++-
T Consensus 43 tSaG~N~L~yL~-~~P~~I~aVDlNp~Q~aLleL 75 (380)
T PF11899_consen 43 TSAGCNALDYLL-AGPKRIHAVDLNPAQNALLEL 75 (380)
T ss_pred ccCCchHHHHHh-cCCceEEEEeCCHHHHHHHHH
Confidence 678889999988 589999999999987776654
No 445
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=48.94 E-value=1.2e+02 Score=28.51 Aligned_cols=85 Identities=14% Similarity=0.097 Sum_probs=52.5
Q ss_pred ccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCCH
Q 019408 4 CGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSDS 83 (341)
Q Consensus 4 sG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp~ 83 (341)
.|...++.|+..|+.+|++++.+++-.+.+++ .+.. .+--.+.+..+.+... .++.+|+|+ |.-|.+
T Consensus 162 vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~-----~~~~~~~~~~~~i~~~--~~~~~d~vl-~~~~~~- 228 (336)
T cd08252 162 VGSIAIQLAKQLTGLTVIATASRPESIAWVKE----LGAD-----HVINHHQDLAEQLEAL--GIEPVDYIF-CLTDTD- 228 (336)
T ss_pred HHHHHHHHHHHcCCcEEEEEcCChhhHHHHHh----cCCc-----EEEeCCccHHHHHHhh--CCCCCCEEE-EccCcH-
Confidence 45556777887785678999998887777744 3331 1111112333333322 234689775 765532
Q ss_pred HHHHHHHHhcccCCEEEE
Q 019408 84 SFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 84 ~fld~al~~v~~gGlL~v 101 (341)
..++.++++++.+|-++.
T Consensus 229 ~~~~~~~~~l~~~g~~v~ 246 (336)
T cd08252 229 QHWDAMAELIAPQGHICL 246 (336)
T ss_pred HHHHHHHHHhcCCCEEEE
Confidence 578889999999998875
No 446
>TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial. The SUF system is an oxygen-resistant iron-sulfur cluster assembly system found in both aerobes and facultative anaerobes. Its presence appears to be a marker of oxygen tolerance; strict anaerobes and microaerophiles tend to have different FeS cluster biosynthesis systems. Members of this protein family belong to the rrf2 family of transcriptional regulators and are found, typically, as the first gene of a SUF operon. It is found only in a subset of genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role.
Probab=48.85 E-value=23 Score=29.36 Aligned_cols=56 Identities=16% Similarity=0.223 Sum_probs=40.1
Q ss_pred ceehhHHHhhcCCCCCCHHHHHHHHHHCCCEEeeeecCCCceecCCCHHH--HHHHHHh
Q 019408 278 YIKLDEMASRAKMNSPSLKTMMSAVQKEGYVASRSHIASNAIKTNCPMVA--CIRIAKE 334 (341)
Q Consensus 278 yy~~~~l~~~~k~~~p~~~~~~~~L~~~Gy~as~tH~~~~~iKTdAp~~~--i~~i~~~ 334 (341)
..+..+|+..++++.|-..++++.|+++|+-.+.. -...|++-..|.+. +.++++.
T Consensus 25 ~~s~~eia~~l~is~~~v~~~l~~L~~~Gli~~~~-g~~ggy~l~~~~~~it~~~v~~~ 82 (130)
T TIGR02944 25 PYSAAEIAEQTGLNAPTVSKILKQLSLAGIVTSKR-GVEGGYTLARAPRDITVADIVKA 82 (130)
T ss_pred CccHHHHHHHHCcCHHHHHHHHHHHHHCCcEEecC-CCCCChhhcCCccccCHHHHHHH
Confidence 47999999999999999999999999999986632 22335555544432 3444443
No 447
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=48.73 E-value=1.5e+02 Score=27.43 Aligned_cols=89 Identities=16% Similarity=0.162 Sum_probs=52.0
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
+.|...++.++..|+. |+..+.+++-.+.++. .+.. ..+.....+....+.... .+..+|+++ |-.|.
T Consensus 178 ~iG~~~~~~~~~~g~~-v~~~~~~~~~~~~~~~----~~~~----~~~~~~~~~~~~~~~~~~-~~~~~d~~i-~~~g~- 245 (342)
T cd08266 178 GVGSAAIQIAKLFGAT-VIATAGSEDKLERAKE----LGAD----YVIDYRKEDFVREVRELT-GKRGVDVVV-EHVGA- 245 (342)
T ss_pred hHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHH----cCCC----eEEecCChHHHHHHHHHh-CCCCCcEEE-ECCcH-
Confidence 3455666777766765 7888888877666543 2321 112222223333333322 234688775 55443
Q ss_pred HHHHHHHHHhcccCCEEEEEec
Q 019408 83 SSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~vt~T 104 (341)
..++.+++.++++|-+...++
T Consensus 246 -~~~~~~~~~l~~~G~~v~~~~ 266 (342)
T cd08266 246 -ATWEKSLKSLARGGRLVTCGA 266 (342)
T ss_pred -HHHHHHHHHhhcCCEEEEEec
Confidence 567888999999998876544
No 448
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=48.37 E-value=10 Score=28.08 Aligned_cols=38 Identities=16% Similarity=0.396 Sum_probs=30.1
Q ss_pred eehhHHHhhcCCCCCCHHHHHHHHHHCCCEEeeeecCC
Q 019408 279 IKLDEMASRAKMNSPSLKTMMSAVQKEGYVASRSHIAS 316 (341)
Q Consensus 279 y~~~~l~~~~k~~~p~~~~~~~~L~~~Gy~as~tH~~~ 316 (341)
+++.+||..++++..-++.+++.|..+||-....+-..
T Consensus 15 ~S~~eLa~~~~~s~~~ve~mL~~l~~kG~I~~~~~~~~ 52 (69)
T PF09012_consen 15 VSLAELAREFGISPEAVEAMLEQLIRKGYIRKVDMSSC 52 (69)
T ss_dssp EEHHHHHHHTT--HHHHHHHHHHHHCCTSCEEEEEE--
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEecCCCC
Confidence 89999999999988888999999999999766554443
No 449
>PRK07024 short chain dehydrogenase; Provisional
Probab=48.04 E-value=2.1e+02 Score=25.81 Aligned_cols=34 Identities=6% Similarity=-0.156 Sum_probs=24.0
Q ss_pred ccccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHH
Q 019408 2 CGCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGN 36 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N 36 (341)
.|||..|-..+.+ .|+ +|+..|.+++..+.+.+.
T Consensus 9 Gas~gIG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~ 45 (257)
T PRK07024 9 GASSGIGQALAREYARQGA-TLGLVARRTDALQAFAAR 45 (257)
T ss_pred cCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHh
Confidence 4678888777665 465 689999998776655443
No 450
>PRK07478 short chain dehydrogenase; Provisional
Probab=47.82 E-value=2.1e+02 Score=25.69 Aligned_cols=70 Identities=9% Similarity=-0.056 Sum_probs=40.8
Q ss_pred ccccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHH------HHHHHhhhcCCccc
Q 019408 2 CGCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDAN------RVLSECYLKREFFD 72 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~------~~l~~~~~~~~~fD 72 (341)
.|||..|...+.+ .|+ +|++.+.+++..+.+.+.++..+. ++.++..|.. +++.+....-.+.|
T Consensus 13 Gas~giG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~------~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 85 (254)
T PRK07478 13 GASSGIGRAAAKLFAREGA-KVVVGARRQAELDQLVAEIRAEGG------EAVALAGDVRDEAYAKALVALAVERFGGLD 85 (254)
T ss_pred CCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC------cEEEEEcCCCCHHHHHHHHHHHHHhcCCCC
Confidence 4677777766654 576 689999998888777766654332 3344444432 22333222223578
Q ss_pred EEEeCC
Q 019408 73 LIDIDS 78 (341)
Q Consensus 73 vIdlDP 78 (341)
+++.-.
T Consensus 86 ~li~~a 91 (254)
T PRK07478 86 IAFNNA 91 (254)
T ss_pred EEEECC
Confidence 876543
No 451
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=47.78 E-value=1.3e+02 Score=27.42 Aligned_cols=85 Identities=12% Similarity=0.161 Sum_probs=51.3
Q ss_pred ccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCCH
Q 019408 4 CGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSDS 83 (341)
Q Consensus 4 sG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp~ 83 (341)
.|...++.++..|+. |+..+.+++-.+.+++ .+.. ..+.....|..+.+... ..+..+|+++ |..|.
T Consensus 152 ~g~~~~~~a~~~g~~-v~~~~~~~~~~~~~~~----~g~~----~~~~~~~~~~~~~i~~~-~~~~~~d~v~-~~~g~-- 218 (323)
T cd08241 152 VGLAAVQLAKALGAR-VIAAASSEEKLALARA----LGAD----HVIDYRDPDLRERVKAL-TGGRGVDVVY-DPVGG-- 218 (323)
T ss_pred HHHHHHHHHHHhCCE-EEEEeCCHHHHHHHHH----cCCc----eeeecCCccHHHHHHHH-cCCCCcEEEE-ECccH--
Confidence 455556677766765 8888888877766643 2331 11111223443444433 2234589765 77664
Q ss_pred HHHHHHHHhcccCCEEEE
Q 019408 84 SFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 84 ~fld~al~~v~~gGlL~v 101 (341)
..++.++++++++|.+..
T Consensus 219 ~~~~~~~~~~~~~g~~v~ 236 (323)
T cd08241 219 DVFEASLRSLAWGGRLLV 236 (323)
T ss_pred HHHHHHHHhhccCCEEEE
Confidence 677888999999998775
No 452
>PRK05993 short chain dehydrogenase; Provisional
Probab=47.69 E-value=1.9e+02 Score=26.57 Aligned_cols=32 Identities=6% Similarity=-0.188 Sum_probs=22.8
Q ss_pred ccccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHH
Q 019408 2 CGCGIRSLRYLAE---AKADFVMANDGNDAHRRVIL 34 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~ 34 (341)
.|||..|...+.+ .|+ +|++.+.+++..+.+.
T Consensus 11 GasggiG~~la~~l~~~G~-~Vi~~~r~~~~~~~l~ 45 (277)
T PRK05993 11 GCSSGIGAYCARALQSDGW-RVFATCRKEEDVAALE 45 (277)
T ss_pred CCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence 4678888777654 465 6899999987766544
No 453
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=47.43 E-value=1.1e+02 Score=28.99 Aligned_cols=87 Identities=7% Similarity=-0.007 Sum_probs=48.3
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCH---HHHHHHHHHHHHcCCCCCCCccEEEEec----cHHHHHHHhhhcCCcccEEE
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGND---AHRRVILGNLKSIERGSGDEKRWVVTHF----DANRVLSECYLKREFFDLID 75 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~---~A~~~i~~N~~~n~~~~~~~~~~~v~~~----DA~~~l~~~~~~~~~fDvId 75 (341)
+.|...++.|+..|+.-++..+..+ +..+.+++ .+.. .+...+. +..+.+.... .+ .+|+|+
T Consensus 158 ~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~----~g~~-----~~~~~~~~~~~~~~~~i~~~~-~~-~~d~vl 226 (341)
T cd08290 158 AVGQAVIQLAKLLGIKTINVVRDRPDLEELKERLKA----LGAD-----HVLTEEELRSLLATELLKSAP-GG-RPKLAL 226 (341)
T ss_pred HHHHHHHHHHHHcCCeEEEEEcCCCcchhHHHHHHh----cCCC-----EEEeCcccccccHHHHHHHHc-CC-CceEEE
Confidence 3455667777777876555555443 33444433 4441 2211122 4444444432 22 689776
Q ss_pred eCCCCCCHHHHHHHHHhcccCCEEEEEe
Q 019408 76 IDSFGSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 76 lDPygsp~~fld~al~~v~~gGlL~vt~ 103 (341)
|--|. .-+..+++.++++|.+....
T Consensus 227 -d~~g~--~~~~~~~~~l~~~G~~v~~g 251 (341)
T cd08290 227 -NCVGG--KSATELARLLSPGGTMVTYG 251 (341)
T ss_pred -ECcCc--HhHHHHHHHhCCCCEEEEEe
Confidence 76554 33456789999999887533
No 454
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=47.37 E-value=1.3e+02 Score=29.25 Aligned_cols=91 Identities=13% Similarity=0.114 Sum_probs=50.3
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCC---CCCCccEEEE--------------ec-cHHHHHHHh
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERG---SGDEKRWVVT--------------HF-DANRVLSEC 64 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~---~~~~~~~~v~--------------~~-DA~~~l~~~ 64 (341)
+.|...+.+|+..|++ +++.+.+++-.+.+++ + +.. ..++...... +. +..+-+.+.
T Consensus 205 ~iG~a~~~lak~~G~~-vv~~~~s~~~~~~~~~-~---G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 279 (393)
T cd08246 205 GLGSMAIQLARAAGAN-PVAVVSSEEKAEYCRA-L---GAEGVINRRDFDHWGVLPDVNSEAYTAWTKEARRFGKAIWDI 279 (393)
T ss_pred HHHHHHHHHHHHcCCe-EEEEeCCHHHHHHHHH-c---CCCEEEcccccccccccccccchhhhhhhhccchHHHHHHHH
Confidence 3455567777777876 5677888888887765 2 321 0000000000 00 011122222
Q ss_pred hhcCC-cccEEEeCCCCCCHHHHHHHHHhcccCCEEEEE
Q 019408 65 YLKRE-FFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 65 ~~~~~-~fDvIdlDPygsp~~fld~al~~v~~gGlL~vt 102 (341)
..+. .+|+|+ |..|. ..++.+++.++.+|.+...
T Consensus 280 -~~~~~g~d~vi-d~~g~--~~~~~~~~~l~~~G~~v~~ 314 (393)
T cd08246 280 -LGGREDPDIVF-EHPGR--ATFPTSVFVCDRGGMVVIC 314 (393)
T ss_pred -hCCCCCCeEEE-ECCch--HhHHHHHHHhccCCEEEEE
Confidence 1223 589665 88774 5578899999999988863
No 455
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=47.05 E-value=2.5e+02 Score=26.42 Aligned_cols=68 Identities=12% Similarity=0.015 Sum_probs=35.3
Q ss_pred ccccHhHHHHhhh---CCCCEEEEeeCC-HHHHHHHHHHHHHcCCCCCCCccEEEEeccHH------HHHHHhhhcCCcc
Q 019408 2 CGCGIRSLRYLAE---AKADFVMANDGN-DAHRRVILGNLKSIERGSGDEKRWVVTHFDAN------RVLSECYLKREFF 71 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~Dis-~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~------~~l~~~~~~~~~f 71 (341)
.|+|..|..++.+ .|+ +|+.+|.+ +...+.+.+.++..+ .++.++..|+. +++..... -.+.
T Consensus 19 Gas~gIG~~ia~~L~~~Ga-~Vv~~~~~~~~~~~~~~~~i~~~g------~~~~~~~~Dv~d~~~~~~~~~~~~~-~g~i 90 (306)
T PRK07792 19 GAAAGLGRAEALGLARLGA-TVVVNDVASALDASDVLDEIRAAG------AKAVAVAGDISQRATADELVATAVG-LGGL 90 (306)
T ss_pred CCCChHHHHHHHHHHHCCC-EEEEecCCchhHHHHHHHHHHhcC------CeEEEEeCCCCCHHHHHHHHHHHHH-hCCC
Confidence 3566667666554 576 58888875 334444444444322 23445555543 33333222 2367
Q ss_pred cEEEeC
Q 019408 72 DLIDID 77 (341)
Q Consensus 72 DvIdlD 77 (341)
|+|+.-
T Consensus 91 D~li~n 96 (306)
T PRK07792 91 DIVVNN 96 (306)
T ss_pred CEEEEC
Confidence 987653
No 456
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=46.89 E-value=33 Score=31.94 Aligned_cols=76 Identities=18% Similarity=0.048 Sum_probs=46.4
Q ss_pred CEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC--CCCCHHHHHHHHHhccc
Q 019408 18 DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--FGSDSSFLRTVFNAVKR 95 (341)
Q Consensus 18 ~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--ygsp~~fld~al~~v~~ 95 (341)
..|++++.|+...+-+-.=++. . .++..+-.||+.--.-. .--+..|+|+.|= -....-++..|-..|++
T Consensus 99 G~VYaVEfs~r~~rdL~~la~~-R------~NIiPIl~DAr~P~~Y~-~lv~~VDvI~~DVaQp~Qa~I~~~Na~~fLk~ 170 (229)
T PF01269_consen 99 GVVYAVEFSPRSMRDLLNLAKK-R------PNIIPILEDARHPEKYR-MLVEMVDVIFQDVAQPDQARIAALNARHFLKP 170 (229)
T ss_dssp SEEEEEESSHHHHHHHHHHHHH-S------TTEEEEES-TTSGGGGT-TTS--EEEEEEE-SSTTHHHHHHHHHHHHEEE
T ss_pred CcEEEEEecchhHHHHHHHhcc-C------CceeeeeccCCChHHhh-cccccccEEEecCCChHHHHHHHHHHHhhccC
Confidence 4699999999887766643332 1 25677889998543221 1124689999995 12122344455567999
Q ss_pred CCEEEE
Q 019408 96 DGLLYL 101 (341)
Q Consensus 96 gGlL~v 101 (341)
||.+.+
T Consensus 171 gG~~~i 176 (229)
T PF01269_consen 171 GGHLII 176 (229)
T ss_dssp EEEEEE
T ss_pred CcEEEE
Confidence 998875
No 457
>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor.
Probab=46.69 E-value=31 Score=23.56 Aligned_cols=35 Identities=17% Similarity=0.317 Sum_probs=30.2
Q ss_pred eehhHHHhhcCCCCCCHHHHHHHHHHCCCEEeeee
Q 019408 279 IKLDEMASRAKMNSPSLKTMMSAVQKEGYVASRSH 313 (341)
Q Consensus 279 y~~~~l~~~~k~~~p~~~~~~~~L~~~Gy~as~tH 313 (341)
-++.+|++.++.+.+.....++.|.+.|+-.+...
T Consensus 11 ~~~~~i~~~l~is~~~v~~~l~~L~~~g~i~~~~~ 45 (66)
T smart00418 11 LCVCELAEILGLSQSTVSHHLKKLREAGLVESRRE 45 (66)
T ss_pred ccHHHHHHHHCCCHHHHHHHHHHHHHCCCeeeeec
Confidence 36789999999999999999999999999875543
No 458
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=46.63 E-value=15 Score=25.36 Aligned_cols=29 Identities=21% Similarity=0.401 Sum_probs=27.5
Q ss_pred ehhHHHhhcCCCCCCHHHHHHHHHHCCCE
Q 019408 280 KLDEMASRAKMNSPSLKTMMSAVQKEGYV 308 (341)
Q Consensus 280 ~~~~l~~~~k~~~p~~~~~~~~L~~~Gy~ 308 (341)
+..+|+..++++.++..+.+..|.+.|+-
T Consensus 22 s~~~la~~~~vs~~tv~~~l~~L~~~g~i 50 (60)
T smart00345 22 SERELAAQLGVSRTTVREALSRLEAEGLV 50 (60)
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCCE
Confidence 89999999999999999999999999994
No 459
>PRK06181 short chain dehydrogenase; Provisional
Probab=46.59 E-value=2.2e+02 Score=25.63 Aligned_cols=70 Identities=10% Similarity=0.015 Sum_probs=40.7
Q ss_pred ccccHhHHHHhh---hCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHH------HHHhhhcCCccc
Q 019408 2 CGCGIRSLRYLA---EAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRV------LSECYLKREFFD 72 (341)
Q Consensus 2 agsG~rgir~a~---e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~------l~~~~~~~~~fD 72 (341)
.|||..|...+. +.|. +|++.|.++...+.+.+.++..+ .++.++..|..+. +......-...|
T Consensus 8 Gasg~iG~~la~~l~~~g~-~Vi~~~r~~~~~~~~~~~l~~~~------~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 80 (263)
T PRK06181 8 GASEGIGRALAVRLARAGA-QLVLAARNETRLASLAQELADHG------GEALVVPTDVSDAEACERLIEAAVARFGGID 80 (263)
T ss_pred cCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC------CcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 467777776654 3565 79999999887776666665432 2344555554332 222211122568
Q ss_pred EEEeCC
Q 019408 73 LIDIDS 78 (341)
Q Consensus 73 vIdlDP 78 (341)
+|+.-.
T Consensus 81 ~vi~~a 86 (263)
T PRK06181 81 ILVNNA 86 (263)
T ss_pred EEEECC
Confidence 886554
No 460
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=46.18 E-value=77 Score=29.91 Aligned_cols=96 Identities=18% Similarity=0.082 Sum_probs=52.0
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCC-Ccc--EE-EEeccHHHHHHHhhhcCCc-ccEE-E
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGD-EKR--WV-VTHFDANRVLSECYLKREF-FDLI-D 75 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~-~~~--~~-v~~~DA~~~l~~~~~~~~~-fDvI-d 75 (341)
||||+-||-+|+..+ ..|+.-|. +..++.++.|...|+....+ +.. +. +..+++-..-... .. ||+| -
T Consensus 95 sGtglvG~~aa~~~~-~~v~ltD~-~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~----~~~~Dlila 168 (248)
T KOG2793|consen 95 SGTGLVGILAALLLG-AEVVLTDL-PKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRL----PNPFDLILA 168 (248)
T ss_pred CCccHHHHHHHHHhc-ceeccCCc-hhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhcc----CCcccEEEE
Confidence 799999999999534 45666665 56777777776655442101 012 22 3445555443322 23 8866 4
Q ss_pred eCCCC---CCHHHHHHHHHhcccCCEEEEEec
Q 019408 76 IDSFG---SDSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 76 lDPyg---sp~~fld~al~~v~~gGlL~vt~T 104 (341)
-|++- ++.+.+..-...+..++.+.+ +|
T Consensus 169 sDvvy~~~~~e~Lv~tla~ll~~~~~i~l-~~ 199 (248)
T KOG2793|consen 169 SDVVYEEESFEGLVKTLAFLLAKDGTIFL-AY 199 (248)
T ss_pred eeeeecCCcchhHHHHHHHHHhcCCeEEE-EE
Confidence 56632 222333333345667774443 55
No 461
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=46.01 E-value=2.4e+02 Score=25.79 Aligned_cols=69 Identities=16% Similarity=0.090 Sum_probs=38.7
Q ss_pred ccccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHH------HHHHHhhhcCCccc
Q 019408 2 CGCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDAN------RVLSECYLKREFFD 72 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~------~~l~~~~~~~~~fD 72 (341)
.|+|..|...+.. .|+ +|++.|.+++..+.+.+.++..+ .++.++..|.. .++......-...|
T Consensus 17 Gas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~id 89 (278)
T PRK08277 17 GGGGVLGGAMAKELARAGA-KVAILDRNQEKAEAVVAEIKAAG------GEALAVKADVLDKESLEQARQQILEDFGPCD 89 (278)
T ss_pred CCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC------CeEEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence 3566666666553 576 68999999877766666554322 23444555542 22332222223678
Q ss_pred EEEeC
Q 019408 73 LIDID 77 (341)
Q Consensus 73 vIdlD 77 (341)
+|+.-
T Consensus 90 ~li~~ 94 (278)
T PRK08277 90 ILING 94 (278)
T ss_pred EEEEC
Confidence 88653
No 462
>PRK03902 manganese transport transcriptional regulator; Provisional
Probab=45.99 E-value=29 Score=29.22 Aligned_cols=31 Identities=16% Similarity=0.435 Sum_probs=28.7
Q ss_pred eehhHHHhhcCCCCCCHHHHHHHHHHCCCEE
Q 019408 279 IKLDEMASRAKMNSPSLKTMMSAVQKEGYVA 309 (341)
Q Consensus 279 y~~~~l~~~~k~~~p~~~~~~~~L~~~Gy~a 309 (341)
-++.+|+..++++.|+....+..|.+.||-.
T Consensus 23 ~~~~ela~~l~vs~~svs~~l~~L~~~Gli~ 53 (142)
T PRK03902 23 ARVSDIAEALSVHPSSVTKMVQKLDKDEYLI 53 (142)
T ss_pred cCHHHHHHHhCCChhHHHHHHHHHHHCCCEE
Confidence 4789999999999999999999999999965
No 463
>PRK07825 short chain dehydrogenase; Provisional
Probab=45.97 E-value=1.6e+02 Score=26.81 Aligned_cols=35 Identities=20% Similarity=0.060 Sum_probs=24.2
Q ss_pred ccccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHH
Q 019408 2 CGCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNL 37 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~ 37 (341)
.|||..|...+.+ .|+ +|++.+.+++..+.+.+.+
T Consensus 12 GasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~ 49 (273)
T PRK07825 12 GGARGIGLATARALAALGA-RVAIGDLDEALAKETAAEL 49 (273)
T ss_pred CCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh
Confidence 4678888776654 576 4888999987766555443
No 464
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=45.67 E-value=1.6e+02 Score=27.33 Aligned_cols=85 Identities=11% Similarity=0.014 Sum_probs=48.9
Q ss_pred ccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCCH
Q 019408 4 CGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSDS 83 (341)
Q Consensus 4 sG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp~ 83 (341)
.|...++.|+..|+. |++...+++-.+.+++ .+++ ..+.....+....+... ..+..+|+|+ |..|.
T Consensus 151 vg~~~~~~a~~~g~~-v~~~~~~~~~~~~~~~----~g~~----~~~~~~~~~~~~~~~~~-~~~~~~d~vl-~~~g~-- 217 (323)
T cd05282 151 VGRMLIQLAKLLGFK-TINVVRRDEQVEELKA----LGAD----EVIDSSPEDLAQRVKEA-TGGAGARLAL-DAVGG-- 217 (323)
T ss_pred HHHHHHHHHHHCCCe-EEEEecChHHHHHHHh----cCCC----EEecccchhHHHHHHHH-hcCCCceEEE-ECCCC--
Confidence 455567778877875 6666666665555532 3441 11111122233333332 2345689776 88665
Q ss_pred HHHHHHHHhcccCCEEEE
Q 019408 84 SFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 84 ~fld~al~~v~~gGlL~v 101 (341)
+....+++.++.+|-++.
T Consensus 218 ~~~~~~~~~l~~~g~~v~ 235 (323)
T cd05282 218 ESATRLARSLRPGGTLVN 235 (323)
T ss_pred HHHHHHHHhhCCCCEEEE
Confidence 345677899999998875
No 465
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=45.66 E-value=83 Score=31.45 Aligned_cols=113 Identities=19% Similarity=0.185 Sum_probs=60.3
Q ss_pred hHHHHhhhCCCCEEEE---eeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHH---------HhhhcCCcccEE
Q 019408 7 RSLRYLAEAKADFVMA---NDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLS---------ECYLKREFFDLI 74 (341)
Q Consensus 7 rgir~a~e~ga~~V~~---~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~---------~~~~~~~~fDvI 74 (341)
=||+++.+.|-.-.++ +|.=-+....+++-+...+ +....+|.-...+ ++.+-.+.||++
T Consensus 135 ~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~~~~--------I~~Lyg~S~~~fr~plvVaTtHQLlrFk~aFD~l 206 (441)
T COG4098 135 QGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFSNCD--------IDLLYGDSDSYFRAPLVVATTHQLLRFKQAFDLL 206 (441)
T ss_pred HHHHHHHhcCCeEEEecCcccchHHHHHHHHHhhccCC--------eeeEecCCchhccccEEEEehHHHHHHHhhccEE
Confidence 3788888655432232 4555555555555554222 2333333332221 111113469999
Q ss_pred EeC-----CCCCCHHHHHHHHH-hccc-CCEEEEEecCCCC-----CCCC-CchhHHhhhccccCCC
Q 019408 75 DID-----SFGSDSSFLRTVFN-AVKR-DGLLYLTSTDGYS-----SGGH-RPNNSLASYGAYILPM 128 (341)
Q Consensus 75 dlD-----Pygsp~~fld~al~-~v~~-gGlL~vt~TD~~~-----l~g~-~~~~~~r~Yg~~~~~~ 128 (341)
++| ||.. .++|.-|++ +.+. |-.+++|||-+.. +-|+ ++.+--+||-..|+..
T Consensus 207 iIDEVDAFP~~~-d~~L~~Av~~ark~~g~~IylTATp~k~l~r~~~~g~~~~~klp~RfH~~pLpv 272 (441)
T COG4098 207 IIDEVDAFPFSD-DQSLQYAVKKARKKEGATIYLTATPTKKLERKILKGNLRILKLPARFHGKPLPV 272 (441)
T ss_pred EEeccccccccC-CHHHHHHHHHhhcccCceEEEecCChHHHHHHhhhCCeeEeecchhhcCCCCCC
Confidence 999 6764 478887765 4554 4566789986533 2333 2344556676665543
No 466
>PF14056 DUF4250: Domain of unknown function (DUF4250)
Probab=45.59 E-value=27 Score=25.19 Aligned_cols=42 Identities=24% Similarity=0.260 Sum_probs=31.2
Q ss_pred HHHHhhcccCCCCCCcceehhHHHhhcCCCCCCHHHHHHHHHHCCCEEe
Q 019408 262 LLSRMIDESDPRLPFGYIKLDEMASRAKMNSPSLKTMMSAVQKEGYVAS 310 (341)
Q Consensus 262 ll~~~~~e~~~~~pp~yy~~~~l~~~~k~~~p~~~~~~~~L~~~Gy~as 310 (341)
||+.++.. .++ .|-+++++|..+.+ +.+.+.+.|...||.=.
T Consensus 8 LlS~VN~k--LRD--~~~sLd~Lc~~~~i---d~~~l~~kL~~~Gy~Y~ 49 (55)
T PF14056_consen 8 LLSIVNMK--LRD--EYSSLDELCYDYDI---DKEELEEKLASIGYEYD 49 (55)
T ss_pred HHHHHHHH--HHh--ccCCHHHHHHHhCC---CHHHHHHHHHHcCCeEc
Confidence 45555522 343 47799999999775 57899999999999743
No 467
>PRK07062 short chain dehydrogenase; Provisional
Probab=44.81 E-value=2.4e+02 Score=25.50 Aligned_cols=36 Identities=17% Similarity=0.047 Sum_probs=25.1
Q ss_pred ccccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHH
Q 019408 2 CGCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLK 38 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~ 38 (341)
.|||..|...+++ .|+ +|++.+.+++..+-+.+.+.
T Consensus 15 Gas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~ 53 (265)
T PRK07062 15 GGSSGIGLATVELLLEAGA-SVAICGRDEERLASAEARLR 53 (265)
T ss_pred CCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHH
Confidence 4667777766654 566 58999999887766665554
No 468
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=44.72 E-value=65 Score=33.04 Aligned_cols=91 Identities=15% Similarity=0.188 Sum_probs=52.3
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
+..||.=..|++.+.|+ .|+++|.++.. +..... .++- ..+++..+.-.. . ....||+|++-| .
T Consensus 15 LG~sG~a~a~~L~~~G~-~v~v~D~~~~~-~~~~~~-~~~~------~~i~~~~g~~~~-~-----~~~~~d~vV~SPGi 79 (448)
T COG0771 15 LGKSGLAAARFLLKLGA-EVTVSDDRPAP-EGLAAQ-PLLL------EGIEVELGSHDD-E-----DLAEFDLVVKSPGI 79 (448)
T ss_pred cccccHHHHHHHHHCCC-eEEEEcCCCCc-cchhhh-hhhc------cCceeecCccch-h-----ccccCCEEEECCCC
Confidence 46789888999998785 69999999887 222221 2111 122333332221 1 124689999999 2
Q ss_pred CCCHHHHHHH--------------HHhcccCCEEEEEecCC
Q 019408 80 GSDSSFLRTV--------------FNAVKRDGLLYLTSTDG 106 (341)
Q Consensus 80 gsp~~fld~a--------------l~~v~~gGlL~vt~TD~ 106 (341)
-...|.++.| .+...+.-++.||-|++
T Consensus 80 ~~~~p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNG 120 (448)
T COG0771 80 PPTHPLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNG 120 (448)
T ss_pred CCCCHHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCc
Confidence 2223555533 33332333999998843
No 469
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=43.97 E-value=1.7e+02 Score=26.12 Aligned_cols=87 Identities=14% Similarity=0.191 Sum_probs=49.9
Q ss_pred ccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCCH
Q 019408 4 CGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSDS 83 (341)
Q Consensus 4 sG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp~ 83 (341)
.|...+.+++..|+ +|+..+.+++..+.+++ .+.. ....+.....+..+.+.... .++.+|+|+ |-.+.
T Consensus 117 ~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~----~g~~--~~~~~~~~~~~~~~~~~~~~-~~~~~d~vi-~~~~~-- 185 (288)
T smart00829 117 VGQAAIQLAQHLGA-EVFATAGSPEKRDFLRE----LGIP--DDHIFSSRDLSFADEILRAT-GGRGVDVVL-NSLAG-- 185 (288)
T ss_pred HHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCC--hhheeeCCCccHHHHHHHHh-CCCCcEEEE-eCCCH--
Confidence 34445667776677 58888888888777643 3331 00111111223333333322 234578665 77663
Q ss_pred HHHHHHHHhcccCCEEEE
Q 019408 84 SFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 84 ~fld~al~~v~~gGlL~v 101 (341)
..++.+++.++++|.+..
T Consensus 186 ~~~~~~~~~l~~~g~~v~ 203 (288)
T smart00829 186 EFLDASLRCLAPGGRFVE 203 (288)
T ss_pred HHHHHHHHhccCCcEEEE
Confidence 567788999999998774
No 470
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance. This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A ....
Probab=43.77 E-value=23 Score=24.75 Aligned_cols=35 Identities=14% Similarity=0.398 Sum_probs=30.9
Q ss_pred eehhHHHhhcCCCCCCHHHHHHHHHHCCCEEeeee
Q 019408 279 IKLDEMASRAKMNSPSLKTMMSAVQKEGYVASRSH 313 (341)
Q Consensus 279 y~~~~l~~~~k~~~p~~~~~~~~L~~~Gy~as~tH 313 (341)
-++.+|+..++++.+.+..++..|.+.||-....+
T Consensus 18 ~~~~~la~~~~~~~~~~t~~i~~L~~~g~I~r~~~ 52 (59)
T PF01047_consen 18 ITQSELAEKLGISRSTVTRIIKRLEKKGLIERERD 52 (59)
T ss_dssp EEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCHHHHHHHHCCChhHHHHHHHHHHHCCCEEeccC
Confidence 68889999999999999999999999999876654
No 471
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=43.71 E-value=2.5e+02 Score=25.35 Aligned_cols=68 Identities=7% Similarity=0.018 Sum_probs=34.9
Q ss_pred ccccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccH------HHHHHHhhhcCCccc
Q 019408 2 CGCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDA------NRVLSECYLKREFFD 72 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA------~~~l~~~~~~~~~fD 72 (341)
.|+|..|...+.+ .|+ +|+.+|.++. +-..+.++..+ .++..+..|. ..++.+......+.|
T Consensus 17 G~~~gIG~a~a~~l~~~G~-~vv~~~~~~~--~~~~~~~~~~~------~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~D 87 (253)
T PRK08993 17 GCDTGLGQGMALGLAEAGC-DIVGINIVEP--TETIEQVTALG------RRFLSLTADLRKIDGIPALLERAVAEFGHID 87 (253)
T ss_pred CCCchHHHHHHHHHHHCCC-EEEEecCcch--HHHHHHHHhcC------CeEEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence 4677777766664 465 4777777642 22222333222 2334445454 333443333334679
Q ss_pred EEEeCC
Q 019408 73 LIDIDS 78 (341)
Q Consensus 73 vIdlDP 78 (341)
+++.-+
T Consensus 88 ~li~~A 93 (253)
T PRK08993 88 ILVNNA 93 (253)
T ss_pred EEEECC
Confidence 887765
No 472
>PRK07775 short chain dehydrogenase; Provisional
Probab=43.64 E-value=2.6e+02 Score=25.62 Aligned_cols=36 Identities=8% Similarity=-0.076 Sum_probs=23.6
Q ss_pred ccccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHH
Q 019408 2 CGCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLK 38 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~ 38 (341)
.|+|..|...+++ .|+ +|++.+.++...+-+..++.
T Consensus 17 Ga~g~iG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~ 55 (274)
T PRK07775 17 GASSGIGAATAIELAAAGF-PVALGARRVEKCEELVDKIR 55 (274)
T ss_pred CCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHH
Confidence 4677777776654 566 68888888766555555554
No 473
>PRK09242 tropinone reductase; Provisional
Probab=43.49 E-value=2.5e+02 Score=25.27 Aligned_cols=72 Identities=11% Similarity=-0.080 Sum_probs=42.0
Q ss_pred ccccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHH------HHHHHhhhcCCccc
Q 019408 2 CGCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDAN------RVLSECYLKREFFD 72 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~------~~l~~~~~~~~~fD 72 (341)
.|+|..|-..+.. .|+ +|++.+.+++..+.+.++++...- ..++.++..|.. .++......-.+.|
T Consensus 16 Ga~~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~l~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id 90 (257)
T PRK09242 16 GASKGIGLAIAREFLGLGA-DVLIVARDADALAQARDELAEEFP----EREVHGLAADVSDDEDRRAILDWVEDHWDGLH 90 (257)
T ss_pred CCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCC----CCeEEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence 3566666666543 466 599999999888877777764311 023444555543 23333322223678
Q ss_pred EEEeCC
Q 019408 73 LIDIDS 78 (341)
Q Consensus 73 vIdlDP 78 (341)
+|+.-.
T Consensus 91 ~li~~a 96 (257)
T PRK09242 91 ILVNNA 96 (257)
T ss_pred EEEECC
Confidence 886655
No 474
>PRK07201 short chain dehydrogenase; Provisional
Probab=43.23 E-value=4.1e+02 Score=27.79 Aligned_cols=70 Identities=9% Similarity=0.004 Sum_probs=41.4
Q ss_pred ccccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHH------HHHHHhhhcCCccc
Q 019408 2 CGCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDAN------RVLSECYLKREFFD 72 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~------~~l~~~~~~~~~fD 72 (341)
.|||..|...+.+ .|+ +|++.+.+++..+.+.+.++..+ .++.++..|+. +++.+....-...|
T Consensus 378 Gas~giG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id 450 (657)
T PRK07201 378 GASSGIGRATAIKVAEAGA-TVFLVARNGEALDELVAEIRAKG------GTAHAYTCDLTDSAAVDHTVKDILAEHGHVD 450 (657)
T ss_pred CCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC------CcEEEEEecCCCHHHHHHHHHHHHHhcCCCC
Confidence 4778888877654 565 69999999887776665554322 23444555543 23333222223578
Q ss_pred EEEeCC
Q 019408 73 LIDIDS 78 (341)
Q Consensus 73 vIdlDP 78 (341)
+|+.-.
T Consensus 451 ~li~~A 456 (657)
T PRK07201 451 YLVNNA 456 (657)
T ss_pred EEEECC
Confidence 887644
No 475
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=43.11 E-value=73 Score=27.02 Aligned_cols=46 Identities=13% Similarity=0.173 Sum_probs=33.2
Q ss_pred CCCCHHHHHHHHHHCCCEEeeeecCCCc--eecCCCHHHHHHHHHhhh
Q 019408 291 NSPSLKTMMSAVQKEGYVASRSHIASNA--IKTNCPMVACIRIAKELQ 336 (341)
Q Consensus 291 ~~p~~~~~~~~L~~~Gy~as~tH~~~~~--iKTdAp~~~i~~i~~~~~ 336 (341)
+..||.++.+.|.++||.-.+||....= |..+.+.+++-..+.+..
T Consensus 17 nki~MaeLr~~l~~~Gf~~V~Tyi~SGNvvf~~~~~~~~l~~~ie~~l 64 (137)
T PF08002_consen 17 NKIKMAELREALEDLGFTNVRTYIQSGNVVFESDRDPAELAAKIEKAL 64 (137)
T ss_dssp S---HHHHHHHHHHCT-EEEEEETTTTEEEEEESS-HHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHcCCCCceEEEeeCCEEEecCCChHHHHHHHHHHH
Confidence 5578999999999999999999998854 667788777766665544
No 476
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=42.70 E-value=93 Score=29.05 Aligned_cols=73 Identities=18% Similarity=0.118 Sum_probs=43.8
Q ss_pred CCCCEEEEeeCCHH--HHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhh--cCCcccEEEeCCCCCCHHHHHHHH
Q 019408 15 AKADFVMANDGNDA--HRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYL--KREFFDLIDIDSFGSDSSFLRTVF 90 (341)
Q Consensus 15 ~ga~~V~~~Dis~~--A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~--~~~~fDvIdlDPygsp~~fld~al 90 (341)
+| .+|..+|.||. ..++ ++|....+.- .+.+.|+..+-...+..... ....||+|++|=-|..+++.+.|+
T Consensus 29 ~G-~~V~lIDaDpn~pl~~W-~~~a~~~~~~---~~~~~V~~~~e~~~l~~~~e~a~~~~~d~VlvDleG~as~~~~~ai 103 (231)
T PF07015_consen 29 RG-ARVALIDADPNQPLAKW-AENAQRPGAW---PDRIEVYEADELTILEDAYEAAEASGFDFVLVDLEGGASELNDYAI 103 (231)
T ss_pred CC-CeEEEEeCCCCCcHHHH-HHhccccCCC---CCCeeEEeccchhhHHHHHHHHHhcCCCEEEEeCCCCCchhHHHHH
Confidence 45 57999999864 3344 5555444321 13445555444444433321 123599999999888888888877
Q ss_pred Hh
Q 019408 91 NA 92 (341)
Q Consensus 91 ~~ 92 (341)
..
T Consensus 104 a~ 105 (231)
T PF07015_consen 104 AR 105 (231)
T ss_pred HH
Confidence 64
No 477
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=42.43 E-value=1.7e+02 Score=27.31 Aligned_cols=83 Identities=17% Similarity=0.221 Sum_probs=47.3
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
+.|...++.|+..|+. |++.+.+++-.+.++ ..+.. .+ +...+....+... . ...+|+ ++|.-|.
T Consensus 157 ~vg~~~~~la~~~G~~-vi~~~~~~~~~~~~~----~~g~~-----~~-~~~~~~~~~~~~~-~-~~~~d~-vld~~g~- 221 (323)
T TIGR02823 157 GVGSLAVAILSKLGYE-VVASTGKAEEEDYLK----ELGAS-----EV-IDREDLSPPGKPL-E-KERWAG-AVDTVGG- 221 (323)
T ss_pred HHHHHHHHHHHHcCCe-EEEEeCCHHHHHHHH----hcCCc-----EE-EccccHHHHHHHh-c-CCCceE-EEECccH-
Confidence 3456667788877875 566666555545553 23431 21 1122222223222 1 224885 4787664
Q ss_pred HHHHHHHHHhcccCCEEEE
Q 019408 83 SSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~v 101 (341)
+-++.++++++++|-+..
T Consensus 222 -~~~~~~~~~l~~~G~~v~ 239 (323)
T TIGR02823 222 -HTLANVLAQLKYGGAVAA 239 (323)
T ss_pred -HHHHHHHHHhCCCCEEEE
Confidence 457789999999998874
No 478
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=42.28 E-value=1.9e+02 Score=26.24 Aligned_cols=86 Identities=20% Similarity=0.217 Sum_probs=50.0
Q ss_pred ccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCCH
Q 019408 4 CGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSDS 83 (341)
Q Consensus 4 sG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp~ 83 (341)
.|...+++++..|+. |++.+.+++..+.+++ .+.. ..+.....+..+.+.... .+..+|+++ |..|.
T Consensus 152 ig~~~~~~~~~~g~~-v~~~~~~~~~~~~~~~----~g~~----~~~~~~~~~~~~~~~~~~-~~~~~d~vi-~~~g~-- 218 (323)
T cd05276 152 VGTAAIQLAKALGAR-VIATAGSEEKLEACRA----LGAD----VAINYRTEDFAEEVKEAT-GGRGVDVIL-DMVGG-- 218 (323)
T ss_pred HHHHHHHHHHHcCCE-EEEEcCCHHHHHHHHH----cCCC----EEEeCCchhHHHHHHHHh-CCCCeEEEE-ECCch--
Confidence 455556667766765 8888888877776633 2321 111111223333333322 234689766 66664
Q ss_pred HHHHHHHHhcccCCEEEEE
Q 019408 84 SFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 84 ~fld~al~~v~~gGlL~vt 102 (341)
+.+..+++.++++|.+...
T Consensus 219 ~~~~~~~~~~~~~g~~i~~ 237 (323)
T cd05276 219 DYLARNLRALAPDGRLVLI 237 (323)
T ss_pred HHHHHHHHhhccCCEEEEE
Confidence 4577889999999877743
No 479
>PRK12937 short chain dehydrogenase; Provisional
Probab=42.25 E-value=2.4e+02 Score=24.88 Aligned_cols=70 Identities=10% Similarity=0.044 Sum_probs=35.2
Q ss_pred ccccHhHHHHhhh---CCCCEEEEeeC-CHHHHHHHHHHHHHcCCCCCCCccEEEEeccHH------HHHHHhhhcCCcc
Q 019408 2 CGCGIRSLRYLAE---AKADFVMANDG-NDAHRRVILGNLKSIERGSGDEKRWVVTHFDAN------RVLSECYLKREFF 71 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~Di-s~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~------~~l~~~~~~~~~f 71 (341)
.|+|..|-..+.+ .|+. |++... ++...+.+.+.++..+ .++.++..|.. +++.+....-...
T Consensus 12 G~~~~iG~~la~~l~~~g~~-v~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 84 (245)
T PRK12937 12 GASRGIGAAIARRLAADGFA-VAVNYAGSAAAADELVAEIEAAG------GRAIAVQADVADAAAVTRLFDAAETAFGRI 84 (245)
T ss_pred CCCchHHHHHHHHHHHCCCE-EEEecCCCHHHHHHHHHHHHhcC------CeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 4677777776654 5764 555443 3444444444444332 23455555543 2233222222357
Q ss_pred cEEEeCC
Q 019408 72 DLIDIDS 78 (341)
Q Consensus 72 DvIdlDP 78 (341)
|+|+.-.
T Consensus 85 d~vi~~a 91 (245)
T PRK12937 85 DVLVNNA 91 (245)
T ss_pred CEEEECC
Confidence 8876644
No 480
>PRK11524 putative methyltransferase; Provisional
Probab=42.19 E-value=41 Score=31.89 Aligned_cols=36 Identities=14% Similarity=0.005 Sum_probs=30.8
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHH
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLK 38 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~ 38 (341)
|+|||.-++-+.+ .| .+.+.+|++++.++++++-++
T Consensus 216 F~GSGTT~~AA~~-lg-R~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 216 FAGSFTTGAVAKA-SG-RKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred CCCCcHHHHHHHH-cC-CCEEEEeCCHHHHHHHHHHHH
Confidence 8999999988876 34 567899999999999998775
No 481
>PRK08703 short chain dehydrogenase; Provisional
Probab=42.09 E-value=2.5e+02 Score=24.92 Aligned_cols=37 Identities=8% Similarity=-0.060 Sum_probs=27.0
Q ss_pred ccccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHHH
Q 019408 2 CGCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLKS 39 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~~ 39 (341)
.|||..|...+.+ .|. +|++++.+++..+.+.+.+..
T Consensus 13 G~sggiG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~ 52 (239)
T PRK08703 13 GASQGLGEQVAKAYAAAGA-TVILVARHQKKLEKVYDAIVE 52 (239)
T ss_pred CCCCcHHHHHHHHHHHcCC-EEEEEeCChHHHHHHHHHHHH
Confidence 4678888777654 565 599999999877776666643
No 482
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=41.92 E-value=84 Score=28.96 Aligned_cols=50 Identities=12% Similarity=0.092 Sum_probs=37.0
Q ss_pred EEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC
Q 019408 19 FVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS 78 (341)
Q Consensus 19 ~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP 78 (341)
+|..+|-++...+.+.+.++..|.. + ....|....+.... .. ||+|.||=
T Consensus 2 ~ILiveDd~~i~~~l~~~L~~~g~~------v-~~~~~~~~a~~~~~--~~-~dlviLD~ 51 (229)
T COG0745 2 RILLVEDDPELAELLKEYLEEEGYE------V-DVAADGEEALEAAR--EQ-PDLVLLDL 51 (229)
T ss_pred eEEEEcCCHHHHHHHHHHHHHCCCE------E-EEECCHHHHHHHHh--cC-CCEEEEEC
Confidence 5889999999999999999988762 2 23444555555432 24 99999994
No 483
>PRK07677 short chain dehydrogenase; Provisional
Probab=41.73 E-value=2.6e+02 Score=25.07 Aligned_cols=69 Identities=9% Similarity=0.010 Sum_probs=38.4
Q ss_pred ccccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccH------HHHHHHhhhcCCccc
Q 019408 2 CGCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDA------NRVLSECYLKREFFD 72 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA------~~~l~~~~~~~~~fD 72 (341)
.|+|..|...+.+ .|+ +|++.|.++...+.+.+-++..+ .++.++..|. .+++.+....-...|
T Consensus 8 G~s~giG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 80 (252)
T PRK07677 8 GGSSGMGKAMAKRFAEEGA-NVVITGRTKEKLEEAKLEIEQFP------GQVLTVQMDVRNPEDVQKMVEQIDEKFGRID 80 (252)
T ss_pred CCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC------CcEEEEEecCCCHHHHHHHHHHHHHHhCCcc
Confidence 4566666655543 676 79999999877766665554322 2344555553 233333322223578
Q ss_pred EEEeC
Q 019408 73 LIDID 77 (341)
Q Consensus 73 vIdlD 77 (341)
+|+--
T Consensus 81 ~lI~~ 85 (252)
T PRK07677 81 ALINN 85 (252)
T ss_pred EEEEC
Confidence 77644
No 484
>PF03444 HrcA_DNA-bdg: Winged helix-turn-helix transcription repressor, HrcA DNA-binding; InterPro: IPR005104 Prokaryotic cells have a defence mechanism against a sudden heat-shock stress. Commonly, they induce a set of proteins that protect cellular proteins from being denatured by heat. Among such proteins are the GroE and DnaK chaperones whose transcription is regulated by a heat-shock repressor protein HrcA. HrcA is a winged helix-turn-helix repressor that negatively regulates the transcription of dnaK and groE operons by binding the upstream CIRCE (controlling inverted repeat of chaperone expression) element. In Bacillus subtilis this element is a perfect 9 base pair inverted repeat separated by a 9 base pair spacer. The crystal structure of a heat-inducible transcriptional repressor, HrcA, from Thermotoga maritima has been reported at 2.2A resolution. HrcA is composed of three domains: an N-terminal winged helix-turn-helix domain (WHTH), a GAF-like domain, and an inserted dimerizing domain (IDD). The IDD shows a unique structural fold with an anti-parallel beta-sheet composed of three beta-strands sided by four alpha-helices. HrcA crystallises as a dimer, which is formed through hydrophobic contact between the IDDs and a limited contact that involves conserved residues between the GAF-like domains []. The structural studies suggest that the inactive form of HrcA is the dimer and this is converted to its DNA-binding form by interaction with GroEL, which binds to a conserved C-terminal sequence region [, ]. Comparison of the HrcA-CIRCE complexes from B. subtilis and Bacillus thermoglucosidasius (Geobacillus thermoglucosidasius), which grow at vastly different ranges of temperature shows that the thermostability profiles were consistent with the difference in the growth temperatures suggesting that HrcA can function as a thermosensor to detect temperature changes in cells []. Any increase in temperature causes the dissociation of the HrcA from the CIRCE complex with the concomitant activation of transcription of the groE and dnaK operons. This domain represents the winged helix-turn-helix DNA-binding domain which is located close to the N terminus of HrcA. This domain is also found at the N terminus of a set of uncharacterised proteins that have two C-terminal CBS domains. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=41.71 E-value=37 Score=26.27 Aligned_cols=64 Identities=16% Similarity=0.298 Sum_probs=43.8
Q ss_pred HHHHHHHhhcc-cCCCCCCcceehhHHHhhcCCCCCCHHHHHHHHHHCCCEEeeeecCCCceecCCCH
Q 019408 259 LEKLLSRMIDE-SDPRLPFGYIKLDEMASRAKMNSPSLKTMMSAVQKEGYVASRSHIASNAIKTNCPM 325 (341)
Q Consensus 259 ~~~ll~~~~~e-~~~~~pp~yy~~~~l~~~~k~~~p~~~~~~~~L~~~Gy~as~tH~~~~~iKTdAp~ 325 (341)
-+.+|..+.++ .+...| ..-..|+..++.++-...-.+..|+++||--+..|-+..=+=|+.-+
T Consensus 6 q~~IL~alV~~Y~~~~~P---VgSk~ia~~l~~s~aTIRN~M~~Le~lGlve~~p~~s~GriPT~~aY 70 (78)
T PF03444_consen 6 QREILKALVELYIETGEP---VGSKTIAEELGRSPATIRNEMADLEELGLVESQPHPSGGRIPTDKAY 70 (78)
T ss_pred HHHHHHHHHHHHHhcCCC---cCHHHHHHHHCCChHHHHHHHHHHHHCCCccCCCCCCCCCCcCHHHH
Confidence 45566665442 223344 34566778888877667888999999999999999877556555443
No 485
>PRK07074 short chain dehydrogenase; Provisional
Probab=41.68 E-value=2.6e+02 Score=25.05 Aligned_cols=68 Identities=19% Similarity=0.150 Sum_probs=38.6
Q ss_pred ccccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHH------HHHHhhhcCCccc
Q 019408 2 CGCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANR------VLSECYLKREFFD 72 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~------~l~~~~~~~~~fD 72 (341)
.|||..|.+.+.. .|+ +|++.|.++...+.+.+.+. + .+++++..|+.+ .+.+...+-...|
T Consensus 9 Gat~~iG~~la~~L~~~g~-~v~~~~r~~~~~~~~~~~~~--~------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d 79 (257)
T PRK07074 9 GAAGGIGQALARRFLAAGD-RVLALDIDAAALAAFADALG--D------ARFVPVACDLTDAASLAAALANAAAERGPVD 79 (257)
T ss_pred CCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc--C------CceEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 4677777776653 565 68999999877665555442 1 134444554422 2332222223578
Q ss_pred EEEeCC
Q 019408 73 LIDIDS 78 (341)
Q Consensus 73 vIdlDP 78 (341)
+|+.-.
T Consensus 80 ~vi~~a 85 (257)
T PRK07074 80 VLVANA 85 (257)
T ss_pred EEEECC
Confidence 887665
No 486
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=41.53 E-value=2.2e+02 Score=25.95 Aligned_cols=87 Identities=11% Similarity=0.072 Sum_probs=50.1
Q ss_pred ccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCCH
Q 019408 4 CGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSDS 83 (341)
Q Consensus 4 sG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp~ 83 (341)
.|...++.++..|+ +|++.+.+++..+.+++ .+.. ..+.....|..+.+.... .++.+|+|+ |..+.
T Consensus 157 ~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~----~g~~----~~~~~~~~~~~~~~~~~~-~~~~~d~vi-~~~~~-- 223 (325)
T cd08253 157 VGHAAVQLARWAGA-RVIATASSAEGAELVRQ----AGAD----AVFNYRAEDLADRILAAT-AGQGVDVII-EVLAN-- 223 (325)
T ss_pred HHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCC----EEEeCCCcCHHHHHHHHc-CCCceEEEE-ECCch--
Confidence 44455566665665 58888888877777643 3431 112222233333333322 234689876 65443
Q ss_pred HHHHHHHHhcccCCEEEEEe
Q 019408 84 SFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 84 ~fld~al~~v~~gGlL~vt~ 103 (341)
..++.+++.++.+|-+....
T Consensus 224 ~~~~~~~~~l~~~g~~v~~~ 243 (325)
T cd08253 224 VNLAKDLDVLAPGGRIVVYG 243 (325)
T ss_pred HHHHHHHHhhCCCCEEEEEe
Confidence 45677888998888776433
No 487
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=41.24 E-value=2.7e+02 Score=25.11 Aligned_cols=70 Identities=11% Similarity=0.084 Sum_probs=35.6
Q ss_pred ccccHhHHHHhhh---CCCCEEEEeeC-CHHHHHHHHHHHHHcCCCCCCCccEEEEeccHH------HHHHHhhhcCCcc
Q 019408 2 CGCGIRSLRYLAE---AKADFVMANDG-NDAHRRVILGNLKSIERGSGDEKRWVVTHFDAN------RVLSECYLKREFF 71 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~Di-s~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~------~~l~~~~~~~~~f 71 (341)
.|+|..|...++. .|+. |++... ++...+.+.+.++..+. ++.++..|+. +++......-.+.
T Consensus 14 Ga~~gIG~~ia~~l~~~G~~-vvi~~~~~~~~~~~~~~~l~~~~~------~~~~~~~Dl~~~~~i~~~~~~~~~~~g~i 86 (261)
T PRK08936 14 GGSTGLGRAMAVRFGKEKAK-VVINYRSDEEEANDVAEEIKKAGG------EAIAVKGDVTVESDVVNLIQTAVKEFGTL 86 (261)
T ss_pred CCCChHHHHHHHHHHHCCCE-EEEEeCCCHHHHHHHHHHHHHcCC------eEEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 4677777766553 5764 555544 45555555555554321 3334444433 2333322222357
Q ss_pred cEEEeCC
Q 019408 72 DLIDIDS 78 (341)
Q Consensus 72 DvIdlDP 78 (341)
|+|+.-.
T Consensus 87 d~lv~~a 93 (261)
T PRK08936 87 DVMINNA 93 (261)
T ss_pred CEEEECC
Confidence 8876554
No 488
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=41.22 E-value=1.7e+02 Score=26.83 Aligned_cols=79 Identities=22% Similarity=0.199 Sum_probs=50.3
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
+.|...+++++..|+ +|+..+.+++-.+.+++ .+. ... +...+ ++ .+..+|+|+ |.-|.
T Consensus 144 ~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~----~g~-----~~~-~~~~~--~~------~~~~~d~vl-~~~g~- 202 (305)
T cd08270 144 GVGRFAVQLAALAGA-HVVAVVGSPARAEGLRE----LGA-----AEV-VVGGS--EL------SGAPVDLVV-DSVGG- 202 (305)
T ss_pred HHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCC-----cEE-Eeccc--cc------cCCCceEEE-ECCCc-
Confidence 456677777887776 58888888876666654 333 111 11111 11 113588776 88775
Q ss_pred HHHHHHHHHhcccCCEEEEEe
Q 019408 83 SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~vt~ 103 (341)
..++.++++++.+|.++...
T Consensus 203 -~~~~~~~~~l~~~G~~v~~g 222 (305)
T cd08270 203 -PQLARALELLAPGGTVVSVG 222 (305)
T ss_pred -HHHHHHHHHhcCCCEEEEEe
Confidence 46788999999999888533
No 489
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=41.07 E-value=77 Score=30.08 Aligned_cols=63 Identities=17% Similarity=0.068 Sum_probs=38.5
Q ss_pred hHHHHhhhCCCCEEEEeeCCH---HHHHHHHHHHHHcCCCCCCCccEEEE--eccHHHHHHHhhhcCCcccEEEeCCC
Q 019408 7 RSLRYLAEAKADFVMANDGND---AHRRVILGNLKSIERGSGDEKRWVVT--HFDANRVLSECYLKREFFDLIDIDSF 79 (341)
Q Consensus 7 rgir~a~e~ga~~V~~~Dis~---~A~~~i~~N~~~n~~~~~~~~~~~v~--~~DA~~~l~~~~~~~~~fDvIdlDPy 79 (341)
++..++.+.|..+|.+++.++ .+++.++...+..++. +.+. ..+..+.+..+ ..+|+|++|--
T Consensus 214 La~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p------~~~~~~~~~l~~~l~~~----~~~d~vliDt~ 281 (282)
T TIGR03499 214 LAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVP------VKVARDPKELRKALDRL----RDKDLILIDTA 281 (282)
T ss_pred HHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCc------eeccCCHHHHHHHHHHc----cCCCEEEEeCC
Confidence 444554422556788888887 4788888888776663 2222 22344444433 35899999963
No 490
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=40.95 E-value=3.1e+02 Score=28.06 Aligned_cols=28 Identities=18% Similarity=-0.025 Sum_probs=21.6
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHH
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHR 30 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~ 30 (341)
..||.-.+++++..|+ .|+..|.++...
T Consensus 21 G~sG~aa~~~L~~~G~-~v~~~D~~~~~~ 48 (488)
T PRK03369 21 GVTGRAVLAALTRFGA-RPTVCDDDPDAL 48 (488)
T ss_pred CHHHHHHHHHHHHCCC-EEEEEcCCHHHH
Confidence 5688888888887776 588899876543
No 491
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=40.88 E-value=1.3e+02 Score=30.33 Aligned_cols=31 Identities=26% Similarity=0.178 Sum_probs=24.4
Q ss_pred cccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHH
Q 019408 3 GCGIRSLRYLAE---AKADFVMANDGNDAHRRVIL 34 (341)
Q Consensus 3 gsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~ 34 (341)
|.|.+|.-.|.- .| -+|+..|+|++.++.++
T Consensus 10 GlG~~G~~~A~~La~~G-~~V~~~D~~~~~v~~l~ 43 (415)
T PRK11064 10 GLGYIGLPTAAAFASRQ-KQVIGVDINQHAVDTIN 43 (415)
T ss_pred CcchhhHHHHHHHHhCC-CEEEEEeCCHHHHHHHH
Confidence 788888887753 34 56999999999988753
No 492
>PRK08177 short chain dehydrogenase; Provisional
Probab=40.85 E-value=2.3e+02 Score=25.00 Aligned_cols=31 Identities=10% Similarity=-0.070 Sum_probs=20.4
Q ss_pred ccccHhHHHHhhh---CCCCEEEEeeCCHHHHHHH
Q 019408 2 CGCGIRSLRYLAE---AKADFVMANDGNDAHRRVI 33 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i 33 (341)
.|||..|-..+.+ .|+ +|+++|.++...+.+
T Consensus 8 G~sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~ 41 (225)
T PRK08177 8 GASRGLGLGLVDRLLERGW-QVTATVRGPQQDTAL 41 (225)
T ss_pred CCCchHHHHHHHHHHhCCC-EEEEEeCCCcchHHH
Confidence 4677766555443 465 699999987665444
No 493
>PRK08264 short chain dehydrogenase; Validated
Probab=40.75 E-value=2.6e+02 Score=24.70 Aligned_cols=30 Identities=10% Similarity=-0.051 Sum_probs=22.1
Q ss_pred ccccHhHHHHhhh---CCCCEEEEeeCCHHHHH
Q 019408 2 CGCGIRSLRYLAE---AKADFVMANDGNDAHRR 31 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~Dis~~A~~ 31 (341)
.|||..|-..+.+ .|+.+|++++.+++..+
T Consensus 13 Ggsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~ 45 (238)
T PRK08264 13 GANRGIGRAFVEQLLARGAAKVYAAARDPESVT 45 (238)
T ss_pred CCCchHHHHHHHHHHHCCcccEEEEecChhhhh
Confidence 5788888776554 67767999999876543
No 494
>PRK15090 DNA-binding transcriptional regulator KdgR; Provisional
Probab=40.28 E-value=34 Score=31.78 Aligned_cols=45 Identities=22% Similarity=0.392 Sum_probs=36.5
Q ss_pred hHHHHHHHhhcccCCCCCCcceehhHHHhhcCCCCCCHHHHHHHHHHCCCEE
Q 019408 258 DLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNSPSLKTMMSAVQKEGYVA 309 (341)
Q Consensus 258 ~~~~ll~~~~~e~~~~~pp~yy~~~~l~~~~k~~~p~~~~~~~~L~~~Gy~a 309 (341)
|...+|+.+.++ ++ .++.+|++.++++.++.-.++..|.+.||-.
T Consensus 15 r~l~IL~~l~~~-----~~--l~l~eia~~lgl~kstv~Rll~tL~~~G~l~ 59 (257)
T PRK15090 15 KVFGILQALGEE-----RE--IGITELSQRVMMSKSTVYRFLQTMKTLGYVA 59 (257)
T ss_pred HHHHHHHHhhcC-----CC--CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 466677777521 23 5899999999999999999999999999954
No 495
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=40.25 E-value=2.1e+02 Score=28.99 Aligned_cols=67 Identities=16% Similarity=0.019 Sum_probs=38.6
Q ss_pred hHHHHhhhCCCCEEEEeeCCHH---HHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 7 RSLRYLAEAKADFVMANDGNDA---HRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 7 rgir~a~e~ga~~V~~~Dis~~---A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
++.+++...+..+|.++|.++. +++.++...+..++. -.......|....|..+ ..+|+|++|--|.
T Consensus 241 LA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp----~~~~~~~~~l~~~l~~~----~~~DlVlIDt~G~ 310 (424)
T PRK05703 241 LAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIP----VEVVYDPKELAKALEQL----RDCDVILIDTAGR 310 (424)
T ss_pred HHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCc----eEccCCHHhHHHHHHHh----CCCCEEEEeCCCC
Confidence 4455551134567999999874 677777777766663 11111122333334332 3589999996443
No 496
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=40.13 E-value=1.6e+02 Score=27.59 Aligned_cols=32 Identities=28% Similarity=0.419 Sum_probs=25.5
Q ss_pred CcccEEEeCCCCCCHHHHHHHHHhcccCCEEEEEe
Q 019408 69 EFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 69 ~~fDvIdlDPygsp~~fld~al~~v~~gGlL~vt~ 103 (341)
+.+|+|+ |..|. +.++.++++++++|-++...
T Consensus 222 ~~~d~vl-~~~g~--~~~~~~~~~l~~~g~~v~~g 253 (325)
T cd08264 222 KMADVVI-NSLGS--SFWDLSLSVLGRGGRLVTFG 253 (325)
T ss_pred CCCCEEE-ECCCH--HHHHHHHHhhccCCEEEEEe
Confidence 3589865 77774 68899999999999988644
No 497
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=40.04 E-value=27 Score=23.74 Aligned_cols=27 Identities=22% Similarity=0.513 Sum_probs=16.2
Q ss_pred eEEEcCCCCCcccccccccCCCCCC-CCC
Q 019408 187 FISYCNHCGNSQAYSWEELGQMSCP-CSN 214 (341)
Q Consensus 187 ~v~~C~~C~~~~~~~~~~~~~~~C~-c~~ 214 (341)
..+.|++||......-.. ....|+ |+.
T Consensus 2 ~~y~C~~CG~~~~~~~~~-~~~~Cp~CG~ 29 (46)
T PRK00398 2 AEYKCARCGREVELDEYG-TGVRCPYCGY 29 (46)
T ss_pred CEEECCCCCCEEEECCCC-CceECCCCCC
Confidence 468899999875432111 135684 765
No 498
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=40.03 E-value=3.9e+02 Score=28.74 Aligned_cols=36 Identities=17% Similarity=0.103 Sum_probs=25.3
Q ss_pred ccccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHH
Q 019408 2 CGCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLK 38 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~ 38 (341)
.|+|..|...+.+ .|+ +|++.|.+++..+.+.+.+.
T Consensus 421 GasggIG~aiA~~La~~Ga-~Vvi~~r~~~~~~~~~~~l~ 459 (676)
T TIGR02632 421 GGAGGIGRETARRLAAEGA-HVVLADLNLEAAEAVAAEIN 459 (676)
T ss_pred CCCcHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHH
Confidence 4677777766553 465 79999999887776655444
No 499
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=39.73 E-value=3.7e+02 Score=26.22 Aligned_cols=97 Identities=16% Similarity=0.078 Sum_probs=63.6
Q ss_pred EEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhh--cCCcccEEEeCC---CCC-----CHHHHHH
Q 019408 19 FVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYL--KREFFDLIDIDS---FGS-----DSSFLRT 88 (341)
Q Consensus 19 ~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~--~~~~fDvIdlDP---ygs-----p~~fld~ 88 (341)
.-+.+|+|.++++...+++..-.+. .-.+..+++|-.+.|..+.. ...... +++=| +|- +..|+..
T Consensus 106 ~Y~plDIS~~~L~~a~~~L~~~~~p---~l~v~~l~gdy~~~l~~l~~~~~~~~~r-~~~flGSsiGNf~~~ea~~fL~~ 181 (319)
T TIGR03439 106 DYYALDVSRSELQRTLAELPLGNFS---HVRCAGLLGTYDDGLAWLKRPENRSRPT-TILWLGSSIGNFSRPEAAAFLAG 181 (319)
T ss_pred eEEEEECCHHHHHHHHHhhhhccCC---CeEEEEEEecHHHHHhhcccccccCCcc-EEEEeCccccCCCHHHHHHHHHH
Confidence 4589999999999999999833332 12345588888887764422 112233 33333 332 2356666
Q ss_pred HHH-hcccCCEEEEEecCCCCCCCCCchhHHhhhccc
Q 019408 89 VFN-AVKRDGLLYLTSTDGYSSGGHRPNNSLASYGAY 124 (341)
Q Consensus 89 al~-~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~ 124 (341)
.-+ .+++||.|.| ..|. | +.+.+-.+.|...
T Consensus 182 ~~~~~l~~~d~lLi-G~D~---~-k~~~~l~~AY~d~ 213 (319)
T TIGR03439 182 FLATALSPSDSFLI-GLDG---C-KDPDKVLRAYNDP 213 (319)
T ss_pred HHHhhCCCCCEEEE-ecCC---C-CCHHHHHHHhcCC
Confidence 556 7899999988 6666 4 6688889999753
No 500
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=39.60 E-value=43 Score=29.84 Aligned_cols=46 Identities=13% Similarity=0.317 Sum_probs=0.0
Q ss_pred EEcCCCCCcccccccccCCCCC-CCCCCCCCCcceeeccccccCCCCHHHHHHHHHHHHh
Q 019408 189 SYCNHCGNSQAYSWEELGQMSC-PCSNTIGSSSLVVSGPLWTGPLHDATHITKMLNLAEK 247 (341)
Q Consensus 189 ~~C~~C~~~~~~~~~~~~~~~C-~c~~~~~~~~~~~~GPlW~G~lhd~~fv~~~l~~~~~ 247 (341)
|+|+.|+.+...--.-..+..| .|++ .+.. ..|.+.++.+-+.++.
T Consensus 118 Y~Cp~C~~rytf~eA~~~~F~Cp~Cg~-----~L~~--------~dn~~~~~~l~~~I~~ 164 (178)
T PRK06266 118 FFCPNCHIRFTFDEAMEYGFRCPQCGE-----MLEE--------YDNSELIKELKEQIKE 164 (178)
T ss_pred EECCCCCcEEeHHHHhhcCCcCCCCCC-----CCee--------cccHHHHHHHHHHHHH
Done!