Query 019409
Match_columns 341
No_of_seqs 82 out of 84
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 15:38:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019409.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019409hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jx3_A Protein DEK; alpha heli 85.1 2.8 9.5E-05 35.6 7.5 94 60-177 14-109 (131)
2 1kdx_B CREB; complex (transcri 25.1 32 0.0011 22.5 1.5 13 138-150 12-24 (28)
3 3lfp_A CSP231I C protein; tran 22.7 70 0.0024 23.8 3.4 53 133-202 37-89 (98)
4 2xi8_A Putative transcription 19.1 1.2E+02 0.0042 19.9 3.7 38 119-156 19-56 (66)
5 1oey_A P67-PHOX, neutrophil cy 18.2 69 0.0023 25.2 2.5 20 137-156 21-40 (83)
6 1rp3_A RNA polymerase sigma fa 17.8 1.1E+02 0.0038 25.3 3.9 36 142-177 21-56 (239)
7 1b0n_A Protein (SINR protein); 17.7 88 0.003 23.3 3.0 39 119-157 19-58 (111)
8 4dnd_A Syntaxin-10, SYN10; str 16.7 1.1E+02 0.0037 25.6 3.5 53 61-125 70-122 (130)
9 2oss_A HUNK1 protein, bromodom 16.7 2.1E+02 0.0072 23.1 5.2 92 80-197 31-127 (127)
10 2al3_A TUG long isoform; TUG U 16.3 61 0.0021 26.0 1.8 18 139-156 29-46 (90)
No 1
>2jx3_A Protein DEK; alpha helix, SAF/SAP motif, DNA binding, chromosomal rearrangement, DNA-binding, nucleus, phosphorylation, proto oncogene; NMR {Homo sapiens}
Probab=85.11 E-value=2.8 Score=35.55 Aligned_cols=94 Identities=15% Similarity=0.167 Sum_probs=56.7
Q ss_pred ChhHHHHHHhhChHHHHHHHHHhcCCCCCCcc--hhhhcccCCcchhHHhhhhhHHHHHHHHHHHHHhccccchhhhhcC
Q 019409 60 DPELRSVLELATDSELYELERILFGPSYFSPL--LKSFTKRADVDYVMIEQDLEEREDFIASLESRFLFLAADARSTLRG 137 (341)
Q Consensus 60 ~~ELr~~LelATdeEL~~L~~ILf~~~~fsPL--lkS~~~~~~~Dy~~~~~~~~~R~~~~~~Ie~rfrflAaD~~tvLRG 137 (341)
.|.....+...+-++|..|..|||++. ...- -++|..=.+-.+ +.++.+++.-.+.|+.
T Consensus 14 Ip~V~~~i~k~k~d~Lk~LH~ilfgr~-Gk~~~~KknI~~FsGF~~---~~~~~~~~k~~e~l~K--------------- 74 (131)
T 2jx3_A 14 IERIHFFLSKKKTDELRNLHKLLYNRP-GTVSSLKKNVGQFSGFPF---EKGSVQYKKKEEMLKK--------------- 74 (131)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHTSSSC-CCSHHHHHHHHTSSCSSC---CCSSHHHHHHHHHHHH---------------
T ss_pred cHHHHHHHcccCHHHHHHHHHHHcCCC-ChHhHHHHHHHhcCCCCC---CccHHHHHHHHHHHHc---------------
Confidence 456677788888889999999999975 2211 122221111111 1223333333333332
Q ss_pred CCccHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhh
Q 019409 138 WRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQE 177 (341)
Q Consensus 138 ~gvsYReVLldVC~kLKV~ys~~lsT~dLEaeIfl~LL~~ 177 (341)
...+-|.++|+=|+|+++. +.++|-+.|+-.|+.=
T Consensus 75 ---~~~~~L~~~c~iL~l~~~g--~keelv~ril~FL~~P 109 (131)
T 2jx3_A 75 ---FRNAMLKSICEVLDLERSG--VNSELVKRILNFLMHP 109 (131)
T ss_dssp ---HHHHHHHHHHHTTTCCSCS--CHHHHHHHHHHTTTSC
T ss_pred ---cCHHHHHHHHHHHCCCCCC--cHHHHHHHHHHHHhCc
Confidence 1356788999999999984 4678877777666543
No 2
>1kdx_B CREB; complex (transcription activator/CO-activator), protein- protein interaction, phosphoserine recognition; HET: SEP; NMR {Rattus norvegicus}
Probab=25.06 E-value=32 Score=22.48 Aligned_cols=13 Identities=46% Similarity=0.810 Sum_probs=10.9
Q ss_pred CCccHHHHHHHHH
Q 019409 138 WRPSYRNVLLAVR 150 (341)
Q Consensus 138 ~gvsYReVLldVC 150 (341)
++||||.||-|..
T Consensus 12 rrpSYrkIlndls 24 (28)
T 1kdx_B 12 RRPSYRKILNDLS 24 (28)
T ss_dssp TSTHHHHHHHHHH
T ss_pred cCchHHHHHHhhc
Confidence 5899999998764
No 3
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=22.73 E-value=70 Score=23.76 Aligned_cols=53 Identities=19% Similarity=0.293 Sum_probs=34.0
Q ss_pred hhhcCCCccHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhhhhccccCCCCCccccCCchhhhhHH
Q 019409 133 STLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSL 202 (341)
Q Consensus 133 tvLRG~gvsYReVLldVC~kLKV~ys~~lsT~dLEaeIfl~LL~~~~~~~~~~~~~awekm~~~e~~~~L 202 (341)
..-+|+...--+.|..+|+.|+|+.+.=+..++-..+ ++. .+.++++++ ++.+
T Consensus 37 ~~E~g~~~p~~~~l~~la~~l~v~~~~l~~~~~~~~~----~~~------------~~~~l~~~~-~~~~ 89 (98)
T 3lfp_A 37 QYEKGKHAPDFEMANRLAKVLKIPVSYLYTPEDDLAQ----IIL------------TWNELNEQE-RKRI 89 (98)
T ss_dssp HHHHTSSCCCHHHHHHHHHHHTSCGGGGGCCCHHHHH----HHH------------HHTTCCHHH-HHHH
T ss_pred HHHCCCCCCCHHHHHHHHHHHCcCHHHHhCCChhHHH----HHH------------HHHhCCHHH-HHHH
Confidence 4456874445567889999999997765544433333 233 366688888 6655
No 4
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=19.08 E-value=1.2e+02 Score=19.95 Aligned_cols=38 Identities=13% Similarity=0.072 Sum_probs=24.7
Q ss_pred HHHHHHhccccchhhhhcCCCccHHHHHHHHHhhcCCC
Q 019409 119 SLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIP 156 (341)
Q Consensus 119 ~Ie~rfrflAaD~~tvLRG~gvsYReVLldVC~kLKV~ 156 (341)
.++.++-.=........+|+...-.+.+..+|+.++|+
T Consensus 19 ~lA~~~gis~~~i~~~e~g~~~~~~~~l~~i~~~l~~~ 56 (66)
T 2xi8_A 19 ELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNTP 56 (66)
T ss_dssp HHHHHHTSCHHHHHHHHTTSCCCCHHHHHHHHHHTTSC
T ss_pred HHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcC
Confidence 35555544333445666787444556788999999986
No 5
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=18.19 E-value=69 Score=25.20 Aligned_cols=20 Identities=25% Similarity=0.167 Sum_probs=18.6
Q ss_pred CCCccHHHHHHHHHhhcCCC
Q 019409 137 GWRPSYRNVLLAVRKNLNIP 156 (341)
Q Consensus 137 G~gvsYReVLldVC~kLKV~ 156 (341)
..+.+|++..-.||+|||++
T Consensus 21 p~~~~y~~L~~~l~~kL~l~ 40 (83)
T 1oey_A 21 QPGLPYSQVRDMVSKKLELR 40 (83)
T ss_dssp CTTCCHHHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHHhCCC
Confidence 46999999999999999997
No 6
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=17.84 E-value=1.1e+02 Score=25.34 Aligned_cols=36 Identities=17% Similarity=0.250 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhh
Q 019409 142 YRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQE 177 (341)
Q Consensus 142 YReVLldVC~kLKV~ys~~lsT~dLEaeIfl~LL~~ 177 (341)
|...+..+|.++.-.+......+||-+|.|+.+++.
T Consensus 21 ~~~~v~~~a~~~~~~~~~~~~aeDl~Qe~~l~l~~~ 56 (239)
T 1rp3_A 21 YLPLVKAIATNIKKHLPEDVDIRDLISYGVIGLIKA 56 (239)
T ss_dssp HHHHHHHHHHHHHTTSCTTSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 566666677776434456778999999999999987
No 7
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=17.73 E-value=88 Score=23.26 Aligned_cols=39 Identities=15% Similarity=0.036 Sum_probs=24.9
Q ss_pred HHHHHHhccccchhhhhcC-CCccHHHHHHHHHhhcCCCC
Q 019409 119 SLESRFLFLAADARSTLRG-WRPSYRNVLLAVRKNLNIPC 157 (341)
Q Consensus 119 ~Ie~rfrflAaD~~tvLRG-~gvsYReVLldVC~kLKV~y 157 (341)
.++.++-.=........+| ....-.+.|..+|+.|+|+.
T Consensus 19 ~lA~~~gis~~~i~~~e~g~~~~p~~~~l~~ia~~l~v~~ 58 (111)
T 1b0n_A 19 ELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSV 58 (111)
T ss_dssp HHHHHHTCCHHHHHHHHTTCCSCCCHHHHHHHHHHHTCCH
T ss_pred HHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHHCcCH
Confidence 3455554433334556678 64444677889999999874
No 8
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=16.74 E-value=1.1e+02 Score=25.64 Aligned_cols=53 Identities=23% Similarity=0.317 Sum_probs=31.3
Q ss_pred hhHHHHHHhhChHHHHHHHHHhcCCCCCCcchhhhcccCCcchhHHhhhhhHHHHHHHHHHHHHh
Q 019409 61 PELRSVLELATDSELYELERILFGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFIASLESRFL 125 (341)
Q Consensus 61 ~ELr~~LelATdeEL~~L~~ILf~~~~fsPLlkS~~~~~~~Dy~~~~~~~~~R~~~~~~Ie~rfr 125 (341)
.||+..|+-+ +++|+||.+-+- +..+++..|.--......|++|+..+.+++.
T Consensus 70 ~EL~~~l~si-e~dLeDLe~sI~-----------ivE~np~kF~l~~~Ei~~Rr~fV~~~r~~I~ 122 (130)
T 4dnd_A 70 NELRNGLRSI-EWDLEDLEETIG-----------IVEANPGKFKLPAGDLQERKVFVERMREAVQ 122 (130)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHH-----------HHHHCHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHH-----------HHHhCHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 4557777655 456666665443 1122222342223347889999999998875
No 9
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=16.73 E-value=2.1e+02 Score=23.10 Aligned_cols=92 Identities=12% Similarity=0.132 Sum_probs=53.2
Q ss_pred HHhcCCCCCCcchhhhc--ccCCcchhH-HhhhhhHHHHHHHHHHHHHhccccchhhhhcCCCccHHHHHHHHHhhcC--
Q 019409 80 RILFGPSYFSPLLKSFT--KRADVDYVM-IEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLN-- 154 (341)
Q Consensus 80 ~ILf~~~~fsPLlkS~~--~~~~~Dy~~-~~~~~~~R~~~~~~Ie~rfrflAaD~~tvLRG~gvsYReVLldVC~kLK-- 154 (341)
+-|.......|..+-+. +...+||.. |..+. .+..|+.++.= |.=-+-.+..-||.-=..
T Consensus 31 ~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~Pm-----dL~tI~~kl~~----------~~Y~s~~ef~~D~~li~~Na 95 (127)
T 2oss_A 31 KTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPM-----DMGTIKKRLEN----------NYYWNAQECIQDFNTMFTNC 95 (127)
T ss_dssp HHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCC-----CHHHHHHHHHT----------TCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHhCccchhhcCCCChhhccCccHHHHcCCCC-----CHHHHHHHHHc----------CCCCCHHHHHHHHHHHHHHH
Confidence 33444555666665554 346789987 22221 45778877753 222233344444321110
Q ss_pred CCCCCCCChHHHHHHHHHHHHhhhhccccCCCCCccccCCchh
Q 019409 155 IPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEASD 197 (341)
Q Consensus 155 V~ys~~lsT~dLEaeIfl~LL~~~~~~~~~~~~~awekm~~~e 197 (341)
..||..-|..-.-+..+.+.+++ .|++|+++|
T Consensus 96 ~~yN~~~s~i~~~A~~L~~~f~~-----------~~~~lp~~e 127 (127)
T 2oss_A 96 YIYNKPGDDIVLMAEALEKLFLQ-----------KINELPTEE 127 (127)
T ss_dssp HHHSCTTCHHHHHHHHHHHHHHH-----------HHTTCCCCC
T ss_pred HHHCCCCCHHHHHHHHHHHHHHH-----------HHHHCCCCC
Confidence 23556666777788888888888 898898765
No 10
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=16.30 E-value=61 Score=25.98 Aligned_cols=18 Identities=11% Similarity=0.062 Sum_probs=16.1
Q ss_pred CccHHHHHHHHHhhcCCC
Q 019409 139 RPSYRNVLLAVRKNLNIP 156 (341)
Q Consensus 139 gvsYReVLldVC~kLKV~ 156 (341)
+-+-.|||.++|+|+|++
T Consensus 29 ~t~L~~VL~eaC~K~gl~ 46 (90)
T 2al3_A 29 STVLLQVLEDTCRRQDFN 46 (90)
T ss_dssp TSBHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHhCCC
Confidence 567889999999999996
Done!