Query 019409
Match_columns 341
No_of_seqs 82 out of 84
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 15:38:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019409.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019409hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1bhga3 c.1.8.3 (A:329-632) be 40.8 3 0.00022 34.3 0.3 40 118-157 36-75 (304)
2 d1jz8a5 c.1.8.3 (A:334-625) be 34.5 6.7 0.00049 32.4 1.5 39 118-156 37-75 (292)
3 d1v54m_ f.23.7.1 (M:) Mitochon 29.8 16 0.0012 24.3 2.5 13 289-301 22-34 (43)
4 d2je8a5 c.1.8.3 (A:331-678) Fi 23.9 12 0.00088 30.7 1.2 35 120-155 47-84 (348)
5 d1yq2a5 c.1.8.3 (A:313-609) be 23.5 12 0.00089 31.1 1.2 39 118-156 36-74 (297)
6 d2pv4a1 a.286.1.1 (A:1-144) Un 23.4 73 0.0053 25.7 6.0 51 141-197 7-63 (144)
7 d1or7a2 a.177.1.1 (A:-1-111) S 21.7 42 0.003 24.0 3.9 32 142-177 31-62 (113)
8 d1zxoa2 c.55.1.5 (A:107-280) H 21.2 22 0.0016 28.4 2.3 19 141-159 139-157 (174)
9 d2f96a1 c.55.3.5 (A:19-220) Ri 20.1 26 0.0019 26.2 2.5 32 146-177 158-194 (202)
10 d2al3a1 d.15.1.2 (A:10-85) Tet 19.8 22 0.0016 26.0 1.8 19 139-157 20-38 (76)
No 1
>d1bhga3 c.1.8.3 (A:329-632) beta-Glucuronidase, domain 3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.82 E-value=3 Score=34.28 Aligned_cols=40 Identities=15% Similarity=0.143 Sum_probs=31.0
Q ss_pred HHHHHHHhccccchhhhhcCCCccHHHHHHHHHhhcCCCC
Q 019409 118 ASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIPC 157 (341)
Q Consensus 118 ~~Ie~rfrflAaD~~tvLRG~gvsYReVLldVC~kLKV~y 157 (341)
+.++..|+.+.+=++|++|-++..+-+.+.+.||++++-.
T Consensus 36 ~~~~~d~~~~k~~G~N~iR~~~~~~~~~~~~~cD~~Gilv 75 (304)
T d1bhga3 36 PLLVKDFNLLRWLGANAFRTSHYPYAEEVMQMCDRYGIVV 75 (304)
T ss_dssp HHHHHHHHHHHHHTCCEEECTTSCCSSTHHHHHSTTCCEE
T ss_pred HHHHHHHHHHHHcCCCEEEecCCCChHHHHHHHHhcCCee
Confidence 4566667777766799999876667788999999998743
No 2
>d1jz8a5 c.1.8.3 (A:334-625) beta-Galactosidase, domain 3 {Escherichia coli [TaxId: 562]}
Probab=34.51 E-value=6.7 Score=32.44 Aligned_cols=39 Identities=5% Similarity=0.097 Sum_probs=32.2
Q ss_pred HHHHHHHhccccchhhhhcCCCccHHHHHHHHHhhcCCC
Q 019409 118 ASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIP 156 (341)
Q Consensus 118 ~~Ie~rfrflAaD~~tvLRG~gvsYReVLldVC~kLKV~ 156 (341)
+.++..|+.+-.=++|++|-+.....+-+++.||++++-
T Consensus 37 ~~~~~di~l~k~~G~N~iR~~~~p~~~~~~~~~D~~Gil 75 (292)
T d1jz8a5 37 QTMVQDILLMKQNNFNAVRCSHYPNHPLWYTLCDRYGLY 75 (292)
T ss_dssp HHHHHHHHHHHHTTCCEEECTTSCCCHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHhhcCCe
Confidence 456777888888889999987666777899999999874
No 3
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=29.83 E-value=16 Score=24.29 Aligned_cols=13 Identities=23% Similarity=0.501 Sum_probs=10.7
Q ss_pred HHHHhhhHHHHHH
Q 019409 289 NMVALLGPVLWGT 301 (341)
Q Consensus 289 s~~~llGPi~W~w 301 (341)
....|+||.||+.
T Consensus 22 ~f~~~L~PaGwVL 34 (43)
T d1v54m_ 22 TFLSFLLPAGWVL 34 (43)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHccHHHHH
Confidence 3478999999984
No 4
>d2je8a5 c.1.8.3 (A:331-678) Five-domain beta-mannosidase, domain 3 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=23.93 E-value=12 Score=30.66 Aligned_cols=35 Identities=11% Similarity=0.080 Sum_probs=23.6
Q ss_pred HHHHHhccccchhhhhcC---CCccHHHHHHHHHhhcCC
Q 019409 120 LESRFLFLAADARSTLRG---WRPSYRNVLLAVRKNLNI 155 (341)
Q Consensus 120 Ie~rfrflAaD~~tvLRG---~gvsYReVLldVC~kLKV 155 (341)
++..|+.+-.=++|++|- .-+. .+.++|.||+++|
T Consensus 47 ~~~di~l~ke~G~N~IR~~~~~~~p-~~~f~d~cD~~Gi 84 (348)
T d2je8a5 47 YQTLFRDMKEANMNMVRIWGGGTYE-NNLFYDLADENGI 84 (348)
T ss_dssp HHHHHHHHHHTTCCEEEECTTSCCC-CHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCCEEecCCCCCCC-CHHHHHHHHHCCC
Confidence 445555555555778883 2222 6888999999997
No 5
>d1yq2a5 c.1.8.3 (A:313-609) beta-Galactosidase, domain 3 {Arthrobacter sp. c2-2 [TaxId: 192168]}
Probab=23.48 E-value=12 Score=31.13 Aligned_cols=39 Identities=10% Similarity=0.056 Sum_probs=31.5
Q ss_pred HHHHHHHhccccchhhhhcCCCccHHHHHHHHHhhcCCC
Q 019409 118 ASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIP 156 (341)
Q Consensus 118 ~~Ie~rfrflAaD~~tvLRG~gvsYReVLldVC~kLKV~ 156 (341)
+.++..|+.+-.=++|.+|-.....-+-++|.||+|++-
T Consensus 36 ~~~~~di~l~k~~G~N~iR~~h~p~~~~~~d~cD~~Gil 74 (297)
T d1yq2a5 36 AGAREDLALMKRFNVNAIRTSHYPPHPRLLDLADEMGFW 74 (297)
T ss_dssp HHHHHHHHHHHHTTCCEEEETTSCCCHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHHHCCCCEEEccCCCChHHHHHHHHhcCCE
Confidence 456777888888889999976555667799999999984
No 6
>d2pv4a1 a.286.1.1 (A:1-144) Uncharacterized protein Sama2622 {Shewanella amazonensis [TaxId: 60478]}
Probab=23.43 E-value=73 Score=25.65 Aligned_cols=51 Identities=22% Similarity=0.365 Sum_probs=36.8
Q ss_pred cHHHHH----HHHHhhcCCCCCCCCChHHHH--HHHHHHHHhhhhccccCCCCCccccCCchh
Q 019409 141 SYRNVL----LAVRKNLNIPCSSKLSTEDLE--AEIFLHLLQEYASEESGVFPGSWENSEASD 197 (341)
Q Consensus 141 sYReVL----ldVC~kLKV~ys~~lsT~dLE--aeIfl~LL~~~~~~~~~~~~~awekm~~~e 197 (341)
.||++. +.||+ +|=-=.+++.+.+| ++++-.|+++ .-+.+..+|+-||.+-
T Consensus 7 ~y~~~~eqvs~nv~n--~Vi~~d~vPe~l~eay~nm~~el~e~----~e~~~~eaW~sLPaSA 63 (144)
T d2pv4a1 7 NYRALAQQVADKVAG--RVIALDRLPESLLTAYRSLCDELLAD----RDGRFTRAWDQLPDSA 63 (144)
T ss_dssp HHHHHHHHHHHHHHH--TTSCGGGSCHHHHHHHHHHHHHHHHT----TTCHHHHHHHHSCHHH
T ss_pred HHHHHHHHHhhhHhh--hhccHhhCcHHHHHHHHHHHHHHHHh----hHHHHHHHHHhCcHHH
Confidence 466544 55775 44444567899999 8999999988 3355566899999876
No 7
>d1or7a2 a.177.1.1 (A:-1-111) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=21.70 E-value=42 Score=23.95 Aligned_cols=32 Identities=19% Similarity=0.422 Sum_probs=25.8
Q ss_pred HHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhh
Q 019409 142 YRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQE 177 (341)
Q Consensus 142 YReVLldVC~kLKV~ys~~lsT~dLEaeIfl~LL~~ 177 (341)
|..-|..+|.++ ++ .. ..+||=+|.|+++.++
T Consensus 31 y~~~l~~~~~~~-~~--~~-daeDl~Qe~~l~~~~~ 62 (113)
T d1or7a2 31 YQHKVASLVSRY-VP--SG-DVPDVVQEAFIKAYRA 62 (113)
T ss_dssp HHHHHHHHHTTT-SC--GG-GHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-cC--Cc-hHHHHHHHHHHHHHHh
Confidence 778888899766 32 33 5899999999999988
No 8
>d1zxoa2 c.55.1.5 (A:107-280) Hypothetical protein BT3618 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=21.21 E-value=22 Score=28.41 Aligned_cols=19 Identities=16% Similarity=0.385 Sum_probs=15.1
Q ss_pred cHHHHHHHHHhhcCCCCCC
Q 019409 141 SYRNVLLAVRKNLNIPCSS 159 (341)
Q Consensus 141 sYReVLldVC~kLKV~ys~ 159 (341)
.|++.|.++|++.++++.+
T Consensus 139 ~~~~~l~~~l~~~~l~i~~ 157 (174)
T d1zxoa2 139 CYKEILQDAARQTGIQIGK 157 (174)
T ss_dssp HTHHHHHHHTTTTTCCEEE
T ss_pred HHHHHHHHHHHHcCCeecC
Confidence 3789999999998877633
No 9
>d2f96a1 c.55.3.5 (A:19-220) Ribonuclease T {Pseudomonas aeruginosa [TaxId: 287]}
Probab=20.10 E-value=26 Score=26.22 Aligned_cols=32 Identities=16% Similarity=0.222 Sum_probs=23.5
Q ss_pred HHHHHhhcCCCCCC---CCChHH--HHHHHHHHHHhh
Q 019409 146 LLAVRKNLNIPCSS---KLSTED--LEAEIFLHLLQE 177 (341)
Q Consensus 146 LldVC~kLKV~ys~---~lsT~d--LEaeIfl~LL~~ 177 (341)
|-.+|++++|.++. +-...| .-++||.+++++
T Consensus 158 L~~~~~~~gi~~~~~~aH~Al~Da~~ta~i~~~l~~~ 194 (202)
T d2f96a1 158 LAKACQAAGMEFDNREAHSARYDTEKTAELFCGIVNR 194 (202)
T ss_dssp HHHHHHHTTCCCCTTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCCCCChHHHHHHHHHHHHHHHHH
Confidence 56689999998655 434444 457899999988
No 10
>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=19.79 E-value=22 Score=26.01 Aligned_cols=19 Identities=11% Similarity=0.004 Sum_probs=16.0
Q ss_pred CccHHHHHHHHHhhcCCCC
Q 019409 139 RPSYRNVLLAVRKNLNIPC 157 (341)
Q Consensus 139 gvsYReVLldVC~kLKV~y 157 (341)
+-.-.|||.++|+|+|++-
T Consensus 20 ~t~l~~VL~eaC~k~~~~~ 38 (76)
T d2al3a1 20 STVLLQVLEDTCRRQDFNP 38 (76)
T ss_dssp TSBHHHHHHHHHHHTTCCG
T ss_pred CcCHHHHHHHHHHHhCCCh
Confidence 5567899999999999863
Done!