Query 019410
Match_columns 341
No_of_seqs 196 out of 1652
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 09:14:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019410.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019410hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2515 Acd 1-aminocyclopropan 100.0 5E-43 1.1E-47 326.8 21.2 232 31-301 2-235 (323)
2 PRK03910 D-cysteine desulfhydr 100.0 3.7E-41 8.1E-46 326.4 27.0 258 32-325 3-278 (331)
3 COG0031 CysK Cysteine synthase 100.0 2.9E-41 6.4E-46 318.9 24.4 235 41-325 6-256 (300)
4 TIGR01275 ACC_deam_rel pyridox 100.0 7.1E-41 1.5E-45 321.5 26.7 244 42-325 3-261 (311)
5 PRK14045 1-aminocyclopropane-1 100.0 1.4E-40 3E-45 322.3 27.2 223 31-295 8-233 (329)
6 TIGR01274 ACC_deam 1-aminocycl 100.0 1.7E-40 3.7E-45 322.6 26.3 261 31-325 1-283 (337)
7 PRK12390 1-aminocyclopropane-1 100.0 9.8E-40 2.1E-44 317.2 25.9 260 32-325 3-284 (337)
8 PLN02556 cysteine synthase/L-3 100.0 1.3E-39 2.7E-44 319.6 24.9 251 24-325 29-304 (368)
9 cd06449 ACCD Aminocyclopropane 100.0 2.3E-38 5E-43 303.8 26.0 247 47-325 1-267 (307)
10 COG1171 IlvA Threonine dehydra 100.0 1.3E-39 2.9E-44 312.7 16.7 234 39-326 18-277 (347)
11 PRK10717 cysteine synthase A; 100.0 8.3E-38 1.8E-42 302.9 25.6 242 39-325 6-270 (330)
12 PLN03013 cysteine synthase 100.0 2.3E-37 4.9E-42 306.9 25.1 236 39-325 116-368 (429)
13 TIGR01136 cysKM cysteine synth 100.0 4.6E-37 1E-41 293.8 24.7 232 43-325 4-251 (299)
14 cd01561 CBS_like CBS_like: Thi 100.0 8.1E-37 1.8E-41 290.8 25.8 232 45-325 1-248 (291)
15 TIGR01138 cysM cysteine syntha 100.0 5.7E-37 1.2E-41 292.2 24.0 228 43-325 5-244 (290)
16 PRK11761 cysM cysteine synthas 100.0 6.7E-37 1.5E-41 292.6 24.5 233 39-326 5-249 (296)
17 TIGR01139 cysK cysteine syntha 100.0 1.3E-36 2.8E-41 290.5 26.0 233 43-325 4-251 (298)
18 PRK07476 eutB threonine dehydr 100.0 1.7E-37 3.6E-42 299.9 19.8 232 39-325 12-269 (322)
19 PLN02550 threonine dehydratase 100.0 3.1E-37 6.8E-42 315.9 22.0 233 39-325 102-358 (591)
20 PRK08526 threonine dehydratase 100.0 3.7E-37 8E-42 305.6 21.4 232 39-325 13-268 (403)
21 PRK12483 threonine dehydratase 100.0 5.2E-37 1.1E-41 312.0 22.8 236 36-325 27-286 (521)
22 cd06448 L-Ser-dehyd Serine deh 100.0 1E-36 2.3E-41 293.7 22.4 230 46-325 1-257 (316)
23 PLN00011 cysteine synthase 100.0 3.5E-36 7.5E-41 290.9 24.8 233 42-325 13-262 (323)
24 PRK06352 threonine synthase; V 100.0 4.2E-37 9.1E-42 300.4 18.4 232 39-325 21-277 (351)
25 PLN02565 cysteine synthase 100.0 4.8E-36 1E-40 289.8 25.4 236 39-325 8-260 (322)
26 TIGR01124 ilvA_2Cterm threonin 100.0 1E-36 2.3E-41 309.4 21.8 233 39-325 10-266 (499)
27 PLN02970 serine racemase 100.0 1.4E-36 2.9E-41 294.3 21.3 233 39-326 20-275 (328)
28 PRK06110 hypothetical protein; 100.0 9.6E-37 2.1E-41 294.6 19.6 231 39-325 14-269 (322)
29 PRK08198 threonine dehydratase 100.0 1.4E-36 2.9E-41 301.9 21.0 232 39-325 15-270 (404)
30 PRK06381 threonine synthase; V 100.0 6.2E-36 1.3E-40 288.4 23.1 189 44-285 13-211 (319)
31 TIGR02991 ectoine_eutB ectoine 100.0 3.8E-36 8.2E-41 290.0 21.4 232 39-325 12-269 (317)
32 PRK06382 threonine dehydratase 100.0 3.6E-36 7.7E-41 299.2 21.6 232 39-325 18-273 (406)
33 PLN02356 phosphateglycerate ki 100.0 1.3E-35 2.9E-40 294.0 24.0 242 39-325 46-355 (423)
34 KOG1250 Threonine/serine dehyd 100.0 3.8E-36 8.2E-41 288.2 19.2 235 38-326 58-316 (457)
35 TIGR01137 cysta_beta cystathio 100.0 2.6E-35 5.6E-40 296.3 25.0 236 41-325 6-263 (454)
36 PRK09224 threonine dehydratase 100.0 1.3E-35 2.7E-40 302.2 22.7 234 38-325 12-269 (504)
37 TIGR02079 THD1 threonine dehyd 100.0 1E-35 2.2E-40 296.1 21.5 233 39-325 9-268 (409)
38 PRK06608 threonine dehydratase 100.0 1.1E-35 2.4E-40 289.0 20.9 231 39-325 16-271 (338)
39 cd01563 Thr-synth_1 Threonine 100.0 1.2E-35 2.6E-40 286.6 20.6 233 39-325 15-281 (324)
40 cd06447 D-Ser-dehyd D-Serine d 100.0 2.7E-35 5.8E-40 291.4 23.0 238 41-325 47-351 (404)
41 PRK08638 threonine dehydratase 100.0 7.6E-36 1.7E-40 289.6 18.6 232 39-325 20-275 (333)
42 TIGR01127 ilvA_1Cterm threonin 100.0 1.1E-35 2.4E-40 293.1 19.9 224 47-325 1-248 (380)
43 PRK07048 serine/threonine dehy 100.0 2E-35 4.2E-40 285.3 21.0 233 39-326 17-273 (321)
44 PRK06721 threonine synthase; R 100.0 4.1E-35 9E-40 286.5 23.1 233 39-325 21-277 (352)
45 PRK07591 threonine synthase; V 100.0 2.6E-35 5.6E-40 294.1 21.9 235 39-325 82-350 (421)
46 PRK07409 threonine synthase; V 100.0 2.8E-35 6E-40 287.8 21.2 232 39-325 24-281 (353)
47 PRK08639 threonine dehydratase 100.0 2.9E-35 6.2E-40 293.8 20.7 235 39-325 18-279 (420)
48 PRK06815 hypothetical protein; 100.0 7.8E-35 1.7E-39 280.8 22.2 232 39-325 13-269 (317)
49 PRK07334 threonine dehydratase 100.0 8.3E-35 1.8E-39 289.1 20.7 233 39-326 16-270 (403)
50 PRK08197 threonine synthase; V 100.0 1.1E-34 2.4E-39 287.5 21.0 235 38-325 71-340 (394)
51 PRK02991 D-serine dehydratase; 100.0 2.6E-34 5.5E-39 287.5 22.8 243 36-325 65-374 (441)
52 cd01562 Thr-dehyd Threonine de 100.0 1.8E-34 3.9E-39 275.6 20.8 231 40-325 11-265 (304)
53 KOG1252 Cystathionine beta-syn 100.0 2.5E-35 5.4E-40 278.4 14.4 238 40-326 46-303 (362)
54 PRK08246 threonine dehydratase 100.0 1.1E-34 2.5E-39 278.9 18.8 228 39-325 16-265 (310)
55 cd00640 Trp-synth-beta_II Tryp 100.0 1.7E-33 3.6E-38 261.1 24.9 202 47-325 1-207 (244)
56 PRK06450 threonine synthase; V 100.0 8.1E-34 1.8E-38 275.9 22.9 224 38-324 50-301 (338)
57 PRK08329 threonine synthase; V 100.0 7E-34 1.5E-38 277.3 22.3 226 39-324 57-303 (347)
58 TIGR02035 D_Ser_am_lyase D-ser 100.0 5.5E-34 1.2E-38 284.2 21.9 244 35-326 59-370 (431)
59 PRK06260 threonine synthase; V 100.0 4.5E-34 9.8E-39 283.3 21.1 233 39-325 60-327 (397)
60 PRK08813 threonine dehydratase 100.0 1.7E-33 3.8E-38 273.9 22.9 226 38-326 31-277 (349)
61 PRK08206 diaminopropionate amm 100.0 2.7E-33 5.9E-38 277.8 21.1 236 41-325 39-330 (399)
62 PRK05638 threonine synthase; V 100.0 4.4E-33 9.5E-38 279.8 22.3 192 38-286 58-257 (442)
63 TIGR00260 thrC threonine synth 100.0 2.5E-33 5.3E-38 271.0 19.0 231 39-325 16-283 (328)
64 TIGR00263 trpB tryptophan synt 100.0 3.9E-32 8.5E-37 268.4 23.8 203 40-285 44-256 (385)
65 PRK04346 tryptophan synthase s 100.0 9.5E-32 2.1E-36 265.6 23.0 216 24-285 39-264 (397)
66 KOG1251 Serine racemase [Signa 100.0 2.9E-32 6.3E-37 247.5 17.1 241 39-335 18-282 (323)
67 PRK13028 tryptophan synthase s 100.0 1.1E-31 2.5E-36 265.4 22.8 256 24-325 43-348 (402)
68 TIGR01747 diampropi_NH3ly diam 100.0 1.1E-31 2.5E-36 264.1 22.6 233 45-325 21-311 (376)
69 TIGR03528 2_3_DAP_am_ly diamin 100.0 1.1E-31 2.4E-36 265.9 21.8 235 45-327 40-332 (396)
70 PLN02618 tryptophan synthase, 100.0 1.5E-31 3.4E-36 264.8 22.7 203 39-284 58-276 (410)
71 PRK13802 bifunctional indole-3 100.0 2.4E-31 5.2E-36 277.0 24.9 255 25-325 308-620 (695)
72 cd06446 Trp-synth_B Tryptophan 100.0 3.3E-31 7.3E-36 260.2 24.4 241 44-325 32-320 (365)
73 TIGR01415 trpB_rel pyridoxal-p 100.0 4.5E-31 9.7E-36 262.9 24.7 245 40-325 62-364 (419)
74 PF00291 PALP: Pyridoxal-phosp 100.0 1.2E-31 2.5E-36 255.3 18.7 234 40-326 1-267 (306)
75 PLN02569 threonine synthase 100.0 9.2E-31 2E-35 264.6 23.1 230 39-322 126-396 (484)
76 PRK12391 tryptophan synthase s 100.0 2E-30 4.4E-35 258.6 24.7 241 44-325 75-373 (427)
77 PRK13803 bifunctional phosphor 100.0 2.2E-30 4.9E-35 268.9 23.3 201 43-284 268-475 (610)
78 KOG1481 Cysteine synthase [Ami 100.0 1.1E-30 2.4E-35 240.9 14.6 241 40-325 43-321 (391)
79 TIGR03844 cysteate_syn cysteat 100.0 7E-28 1.5E-32 238.8 20.6 238 41-325 57-339 (398)
80 COG0498 ThrC Threonine synthas 99.9 2.9E-22 6.3E-27 198.0 18.8 235 39-326 69-334 (411)
81 COG0133 TrpB Tryptophan syntha 99.8 2.5E-20 5.3E-25 175.5 15.7 220 24-287 37-263 (396)
82 KOG1395 Tryptophan synthase be 99.7 1.3E-17 2.9E-22 158.6 10.5 201 43-286 119-330 (477)
83 PRK09225 threonine synthase; V 99.6 2E-14 4.3E-19 145.1 18.8 162 99-280 106-279 (462)
84 cd01560 Thr-synth_2 Threonine 99.6 7.5E-14 1.6E-18 140.9 19.0 161 101-280 107-281 (460)
85 COG1350 Predicted alternative 99.6 6.8E-14 1.5E-18 132.5 14.2 199 44-285 76-297 (432)
86 COG3048 DsdA D-serine dehydrat 98.9 1.9E-08 4.1E-13 95.1 14.2 254 33-336 65-385 (443)
87 PRK15408 autoinducer 2-binding 91.2 15 0.00034 35.6 18.0 160 110-280 70-242 (336)
88 KOG0780 Signal recognition par 83.0 49 0.0011 33.4 14.5 161 92-270 56-239 (483)
89 COG0300 DltE Short-chain dehyd 80.0 23 0.00049 33.7 10.8 74 122-207 8-81 (265)
90 COG1691 NCAIR mutase (PurE)-re 75.7 24 0.00052 32.9 9.2 93 223-327 154-250 (254)
91 KOG0025 Zn2+-binding dehydroge 74.8 9.3 0.0002 37.0 6.6 69 109-185 148-217 (354)
92 PRK12743 oxidoreductase; Provi 74.0 53 0.0012 29.8 11.5 54 123-184 5-58 (256)
93 cd01011 nicotinamidase Nicotin 73.9 9.9 0.00021 34.0 6.4 63 116-181 133-196 (196)
94 PF00070 Pyr_redox: Pyridine n 73.4 18 0.00039 27.0 6.9 33 124-158 2-34 (80)
95 cd01012 YcaC_related YcaC rela 69.1 22 0.00048 30.4 7.3 62 117-181 84-146 (157)
96 PRK11609 nicotinamidase/pyrazi 69.1 30 0.00066 31.1 8.5 64 117-182 138-203 (212)
97 PF11814 DUF3335: Peptidase_C3 66.5 17 0.00036 33.3 6.1 43 116-158 37-79 (207)
98 PRK07478 short chain dehydroge 65.1 86 0.0019 28.3 10.8 32 122-155 8-39 (254)
99 PTZ00331 alpha/beta hydrolase; 64.7 29 0.00063 31.5 7.5 62 117-181 142-204 (212)
100 PLN03032 serine decarboxylase; 64.7 67 0.0014 32.0 10.6 52 123-184 88-139 (374)
101 PF00106 adh_short: short chai 64.5 82 0.0018 26.2 10.8 57 124-185 3-59 (167)
102 PF00107 ADH_zinc_N: Zinc-bind 64.4 40 0.00087 27.1 7.6 16 246-261 58-73 (130)
103 PRK07109 short chain dehydroge 63.2 1.5E+02 0.0032 28.6 15.0 54 123-185 11-64 (334)
104 PF00857 Isochorismatase: Isoc 62.7 13 0.00028 31.9 4.6 65 116-182 107-171 (174)
105 PF04127 DFP: DNA / pantothena 62.5 14 0.0003 33.2 4.7 27 130-156 27-53 (185)
106 PF01210 NAD_Gly3P_dh_N: NAD-d 61.8 12 0.00025 32.2 4.1 30 125-156 3-32 (157)
107 PRK05866 short chain dehydroge 61.6 92 0.002 29.3 10.6 32 123-155 42-73 (293)
108 PF05368 NmrA: NmrA-like famil 60.4 25 0.00054 31.6 6.3 47 129-184 5-51 (233)
109 PRK08643 acetoin reductase; Va 59.4 1.3E+02 0.0029 27.0 10.9 31 123-155 5-35 (256)
110 TIGR01064 pyruv_kin pyruvate k 59.2 1.6E+02 0.0036 30.2 12.5 130 137-282 261-405 (473)
111 PF03808 Glyco_tran_WecB: Glyc 59.1 1.1E+02 0.0025 26.6 10.0 72 110-186 38-110 (172)
112 PRK07370 enoyl-(acyl carrier p 57.9 1.4E+02 0.0031 27.2 11.0 33 121-154 7-40 (258)
113 PRK08085 gluconate 5-dehydroge 56.4 1.4E+02 0.003 26.9 10.6 33 120-154 9-41 (254)
114 PRK13886 conjugal transfer pro 56.1 1.8E+02 0.0038 27.3 13.3 125 133-278 18-150 (241)
115 TIGR02822 adh_fam_2 zinc-bindi 56.0 38 0.00083 32.4 7.0 48 122-182 167-214 (329)
116 cd01013 isochorismatase Isocho 55.9 37 0.00081 30.5 6.5 64 117-182 138-201 (203)
117 TIGR03366 HpnZ_proposed putati 55.7 43 0.00092 31.2 7.1 49 122-182 122-170 (280)
118 PF03808 Glyco_tran_WecB: Glyc 55.5 55 0.0012 28.6 7.4 101 135-260 13-115 (172)
119 cd06324 PBP1_ABC_sugar_binding 55.1 1.8E+02 0.0039 27.1 16.4 47 106-154 42-90 (305)
120 COG2242 CobL Precorrin-6B meth 54.9 15 0.00032 33.2 3.6 86 245-332 32-129 (187)
121 PRK08278 short chain dehydroge 53.8 1.8E+02 0.0039 26.7 11.8 32 123-156 9-40 (273)
122 TIGR03128 RuMP_HxlA 3-hexulose 52.6 1.7E+02 0.0036 25.9 11.0 66 112-185 68-134 (206)
123 PRK05876 short chain dehydroge 51.8 1.7E+02 0.0038 27.0 10.6 54 122-184 8-61 (275)
124 TIGR01316 gltA glutamate synth 48.8 69 0.0015 32.4 7.8 57 122-183 273-329 (449)
125 cd06533 Glyco_transf_WecG_TagA 48.6 1.6E+02 0.0034 25.7 9.1 119 135-279 11-131 (171)
126 PRK12748 3-ketoacyl-(acyl-carr 48.5 2.1E+02 0.0045 25.8 11.1 33 123-155 7-40 (256)
127 PF04989 CmcI: Cephalosporin h 48.5 48 0.001 30.4 5.9 45 231-282 24-69 (206)
128 PRK12937 short chain dehydroge 48.5 1.9E+02 0.0042 25.5 10.8 56 122-185 7-62 (245)
129 cd01015 CSHase N-carbamoylsarc 48.3 66 0.0014 28.0 6.7 40 117-157 110-150 (179)
130 PRK09880 L-idonate 5-dehydroge 48.2 64 0.0014 30.9 7.2 49 122-182 171-219 (343)
131 PF00107 ADH_zinc_N: Zinc-bind 48.2 28 0.00061 28.0 4.1 40 135-185 3-42 (130)
132 PRK06124 gluconate 5-dehydroge 48.1 2.1E+02 0.0045 25.7 10.6 33 121-155 12-44 (256)
133 TIGR02825 B4_12hDH leukotriene 48.0 63 0.0014 30.5 7.1 50 122-183 140-189 (325)
134 PRK13394 3-hydroxybutyrate deh 47.7 2.1E+02 0.0045 25.6 14.2 56 121-185 8-63 (262)
135 PLN02263 serine decarboxylase 47.7 85 0.0018 32.4 8.2 54 122-185 154-207 (470)
136 cd08230 glucose_DH Glucose deh 47.7 69 0.0015 30.8 7.4 50 122-181 174-223 (355)
137 PRK10669 putative cation:proto 47.6 2.3E+02 0.0049 29.5 11.6 29 122-152 418-446 (558)
138 cd06283 PBP1_RegR_EndR_KdgR_li 47.4 2.1E+02 0.0044 25.5 19.7 34 246-281 178-215 (267)
139 COG3688 Predicted RNA-binding 47.1 82 0.0018 27.8 6.8 92 136-239 38-133 (173)
140 PLN02621 nicotinamidase 46.9 65 0.0014 28.7 6.5 62 117-181 123-185 (197)
141 PF01041 DegT_DnrJ_EryC1: DegT 46.7 1.4E+02 0.0031 29.0 9.5 69 103-185 24-94 (363)
142 PRK08340 glucose-1-dehydrogena 46.5 2.2E+02 0.0049 25.7 10.4 30 123-154 3-32 (259)
143 PRK07984 enoyl-(acyl carrier p 46.2 2.4E+02 0.0052 26.0 10.7 32 122-154 8-40 (262)
144 PF07279 DUF1442: Protein of u 46.2 75 0.0016 29.3 6.8 42 116-157 35-80 (218)
145 PRK08303 short chain dehydroge 46.1 2.7E+02 0.0058 26.4 11.5 32 122-155 10-41 (305)
146 cd08197 DOIS 2-deoxy-scyllo-in 46.0 2.5E+02 0.0054 27.6 11.1 31 249-281 86-118 (355)
147 KOG1499 Protein arginine N-met 46.0 25 0.00055 34.6 3.9 33 248-283 61-93 (346)
148 PRK08690 enoyl-(acyl carrier p 45.6 2.3E+02 0.0051 25.8 10.3 31 122-153 8-39 (261)
149 TIGR00561 pntA NAD(P) transhyd 45.1 1.4E+02 0.003 31.2 9.4 51 122-185 165-215 (511)
150 PRK08936 glucose-1-dehydrogena 44.6 2.4E+02 0.0052 25.5 11.0 55 122-184 9-63 (261)
151 cd04726 KGPDC_HPS 3-Keto-L-gul 44.4 1.7E+02 0.0038 25.6 8.9 66 111-184 68-133 (202)
152 TIGR03201 dearomat_had 6-hydro 44.1 67 0.0015 30.8 6.7 48 122-182 168-215 (349)
153 PRK06947 glucose-1-dehydrogena 43.9 2.3E+02 0.0051 25.1 11.3 55 123-184 4-58 (248)
154 cd08294 leukotriene_B4_DH_like 43.8 81 0.0018 29.5 7.1 49 122-182 145-193 (329)
155 PRK08159 enoyl-(acyl carrier p 43.7 2.4E+02 0.0052 26.0 10.2 31 122-153 12-43 (272)
156 cd00401 AdoHcyase S-adenosyl-L 43.5 69 0.0015 32.4 6.7 47 122-181 203-249 (413)
157 PRK02769 histidine decarboxyla 43.2 2.5E+02 0.0055 27.8 10.7 52 123-184 87-138 (380)
158 TIGR00670 asp_carb_tr aspartat 43.0 83 0.0018 30.4 7.0 56 123-184 152-208 (301)
159 PRK12481 2-deoxy-D-gluconate 3 43.0 97 0.0021 28.1 7.3 54 120-184 8-61 (251)
160 cd08193 HVD 5-hydroxyvalerate 42.6 2.8E+02 0.006 27.3 10.9 24 231-259 72-95 (376)
161 TIGR01162 purE phosphoribosyla 42.5 82 0.0018 27.6 6.2 58 232-297 43-100 (156)
162 PRK06505 enoyl-(acyl carrier p 42.3 2.8E+02 0.0061 25.6 10.6 32 122-154 9-41 (271)
163 PRK08594 enoyl-(acyl carrier p 41.9 2.7E+02 0.0059 25.3 10.4 32 122-154 9-41 (257)
164 cd06317 PBP1_ABC_sugar_binding 41.9 2.6E+02 0.0056 25.0 18.4 166 106-282 42-223 (275)
165 PRK05557 fabG 3-ketoacyl-(acyl 41.9 2.4E+02 0.0052 24.7 11.4 32 123-155 7-38 (248)
166 PRK06139 short chain dehydroge 41.7 1.5E+02 0.0032 28.6 8.6 54 123-184 9-62 (330)
167 PRK09424 pntA NAD(P) transhydr 41.5 94 0.002 32.4 7.5 50 122-184 166-215 (509)
168 COG0683 LivK ABC-type branched 41.4 3E+02 0.0066 26.7 10.9 149 118-284 76-240 (366)
169 cd08296 CAD_like Cinnamyl alco 41.1 99 0.0021 29.3 7.3 48 122-182 165-212 (333)
170 cd08295 double_bond_reductase_ 40.9 71 0.0015 30.4 6.2 49 122-182 153-202 (338)
171 PRK06139 short chain dehydroge 40.9 3.4E+02 0.0073 26.1 13.3 40 111-152 22-61 (330)
172 cd08291 ETR_like_1 2-enoyl thi 40.8 1.1E+02 0.0024 28.8 7.5 52 120-183 143-194 (324)
173 PF02737 3HCDH_N: 3-hydroxyacy 40.6 48 0.001 29.2 4.6 27 127-155 5-31 (180)
174 PRK13982 bifunctional SbtC-lik 40.5 39 0.00086 34.8 4.5 36 119-154 255-304 (475)
175 PTZ00142 6-phosphogluconate de 40.4 3.6E+02 0.0078 27.7 11.5 23 132-154 10-32 (470)
176 PRK05867 short chain dehydroge 40.4 2.2E+02 0.0047 25.6 9.1 32 121-154 10-41 (253)
177 PRK03659 glutathione-regulated 40.3 3.3E+02 0.0071 28.8 11.5 50 122-184 401-450 (601)
178 PRK08416 7-alpha-hydroxysteroi 40.2 2.8E+02 0.0061 25.0 11.1 31 122-154 10-40 (260)
179 cd08189 Fe-ADH5 Iron-containin 40.0 3E+02 0.0064 27.1 10.6 24 231-259 72-95 (374)
180 PRK07533 enoyl-(acyl carrier p 40.0 2.9E+02 0.0063 25.1 10.8 32 122-154 12-44 (258)
181 PRK06202 hypothetical protein; 40.0 36 0.00078 30.9 3.8 38 247-284 62-99 (232)
182 cd08239 THR_DH_like L-threonin 39.8 82 0.0018 29.9 6.5 49 122-182 165-213 (339)
183 PRK08862 short chain dehydroge 39.7 2.6E+02 0.0057 25.0 9.5 54 123-184 7-60 (227)
184 PRK12831 putative oxidoreducta 39.6 1.1E+02 0.0025 31.0 7.8 57 122-183 282-338 (464)
185 PRK03562 glutathione-regulated 39.5 3.4E+02 0.0073 28.9 11.5 51 122-185 401-451 (621)
186 PRK06182 short chain dehydroge 39.1 3E+02 0.0065 25.0 14.6 50 123-184 5-54 (273)
187 PRK07774 short chain dehydroge 38.8 2.8E+02 0.0061 24.6 11.3 32 122-155 8-39 (250)
188 PRK12859 3-ketoacyl-(acyl-carr 38.8 3E+02 0.0065 24.9 11.9 32 121-153 7-39 (256)
189 PF00282 Pyridoxal_deC: Pyrido 38.6 1.7E+02 0.0037 28.9 8.7 57 122-186 105-171 (373)
190 cd06301 PBP1_rhizopine_binding 38.6 2.9E+02 0.0063 24.7 17.9 162 108-281 44-219 (272)
191 PRK07806 short chain dehydroge 38.6 2.8E+02 0.0062 24.6 11.2 32 122-155 8-39 (248)
192 PRK12935 acetoacetyl-CoA reduc 38.3 2.9E+02 0.0062 24.5 11.1 56 123-185 8-63 (247)
193 PF03853 YjeF_N: YjeF-related 38.3 1.2E+02 0.0027 26.3 6.8 58 122-182 27-86 (169)
194 PRK08227 autoinducer 2 aldolas 38.2 1E+02 0.0023 29.2 6.7 77 109-186 96-180 (264)
195 PF00465 Fe-ADH: Iron-containi 38.1 53 0.0012 32.2 5.0 100 170-284 15-132 (366)
196 PF04198 Sugar-bind: Putative 37.6 2.2E+02 0.0047 26.6 8.8 79 200-286 9-89 (255)
197 cd06450 DOPA_deC_like DOPA dec 37.4 1.7E+02 0.0037 27.6 8.3 55 122-185 59-124 (345)
198 PRK08862 short chain dehydroge 37.3 1.1E+02 0.0024 27.5 6.7 38 113-152 22-59 (227)
199 PRK07666 fabG 3-ketoacyl-(acyl 37.2 2.5E+02 0.0054 24.9 8.9 31 123-155 10-40 (239)
200 TIGR01832 kduD 2-deoxy-D-gluco 37.0 3E+02 0.0065 24.4 9.6 53 122-185 7-59 (248)
201 cd08187 BDH Butanol dehydrogen 36.7 2.9E+02 0.0062 27.3 9.9 45 232-282 76-137 (382)
202 PF13649 Methyltransf_25: Meth 36.6 39 0.00084 26.2 3.1 32 252-284 4-35 (101)
203 PF13478 XdhC_C: XdhC Rossmann 36.4 37 0.0008 28.8 3.0 30 125-156 2-31 (136)
204 PRK07791 short chain dehydroge 36.3 3.6E+02 0.0077 25.1 11.8 32 121-154 7-38 (286)
205 cd08195 DHQS Dehydroquinate sy 36.3 2.5E+02 0.0053 27.3 9.3 75 197-282 40-120 (345)
206 PRK12744 short chain dehydroge 36.1 3.2E+02 0.007 24.5 11.8 58 122-184 10-67 (257)
207 TIGR02819 fdhA_non_GSH formald 36.1 1.3E+02 0.0027 29.9 7.3 48 122-181 187-234 (393)
208 COG2236 Predicted phosphoribos 36.1 1.8E+02 0.0039 26.3 7.5 96 230-330 15-112 (192)
209 COG0041 PurE Phosphoribosylcar 35.8 2.3E+02 0.0051 24.8 7.8 75 246-329 57-131 (162)
210 TIGR03614 RutB pyrimidine util 35.7 96 0.0021 28.3 6.0 41 117-157 147-187 (226)
211 COG1104 NifS Cysteine sulfinat 35.7 2.8E+02 0.0061 27.9 9.5 76 107-187 40-125 (386)
212 PRK12826 3-ketoacyl-(acyl-carr 35.6 3.1E+02 0.0067 24.2 11.6 55 123-185 8-62 (251)
213 KOG0538 Glycolate oxidase [Ene 35.6 2.2E+02 0.0047 28.0 8.3 57 116-185 240-308 (363)
214 PRK08993 2-deoxy-D-gluconate 3 35.4 2.1E+02 0.0045 25.9 8.2 54 120-184 10-63 (253)
215 PRK07890 short chain dehydroge 35.3 3.3E+02 0.0071 24.3 10.6 31 122-154 7-37 (258)
216 PRK09134 short chain dehydroge 35.2 3.4E+02 0.0073 24.4 11.2 32 122-155 11-42 (258)
217 COG1759 5-formaminoimidazole-4 35.2 1.8E+02 0.0039 28.7 7.7 72 123-217 20-93 (361)
218 cd08300 alcohol_DH_class_III c 34.6 1.3E+02 0.0028 29.1 7.1 49 122-182 188-236 (368)
219 cd01014 nicotinamidase_related 34.6 1.1E+02 0.0023 26.1 5.7 41 117-157 95-135 (155)
220 PRK10624 L-1,2-propanediol oxi 34.5 1.9E+02 0.0042 28.5 8.3 25 231-260 76-100 (382)
221 cd08274 MDR9 Medium chain dehy 34.4 1.6E+02 0.0034 27.9 7.4 47 122-181 179-225 (350)
222 PRK05993 short chain dehydroge 34.4 3.7E+02 0.008 24.6 14.7 49 123-184 7-55 (277)
223 KOG1201 Hydroxysteroid 17-beta 34.4 3.1E+02 0.0067 26.6 9.2 73 120-207 38-111 (300)
224 PRK12429 3-hydroxybutyrate deh 34.3 3.3E+02 0.0072 24.1 13.3 53 123-184 7-59 (258)
225 PRK15395 methyl-galactoside AB 34.3 4.1E+02 0.0089 25.2 18.0 34 246-281 225-259 (330)
226 COG0604 Qor NADPH:quinone redu 34.3 1E+02 0.0022 29.9 6.1 50 122-183 144-193 (326)
227 PRK07063 short chain dehydroge 34.3 3.5E+02 0.0075 24.3 10.8 31 122-154 9-39 (260)
228 TIGR00696 wecB_tagA_cpsF bacte 34.2 2.7E+02 0.0058 24.6 8.3 100 135-259 13-113 (177)
229 PRK06949 short chain dehydroge 34.2 3.4E+02 0.0074 24.2 10.3 33 122-155 10-42 (258)
230 cd08301 alcohol_DH_plants Plan 34.1 1.4E+02 0.0029 28.9 7.1 49 122-182 189-237 (369)
231 PF00890 FAD_binding_2: FAD bi 33.8 55 0.0012 32.2 4.3 28 125-154 3-30 (417)
232 PRK10309 galactitol-1-phosphat 33.5 1.2E+02 0.0026 28.9 6.5 49 122-182 162-210 (347)
233 PLN02238 hypoxanthine phosphor 33.5 3.5E+02 0.0075 24.1 9.8 30 302-331 94-124 (189)
234 cd08292 ETR_like_2 2-enoyl thi 33.5 1.6E+02 0.0035 27.3 7.3 48 122-181 141-188 (324)
235 TIGR00215 lpxB lipid-A-disacch 33.4 1.2E+02 0.0027 29.9 6.7 37 117-155 86-122 (385)
236 TIGR01307 pgm_bpd_ind 2,3-bisp 33.2 2.7E+02 0.0059 29.0 9.3 50 108-157 93-151 (501)
237 cd08289 MDR_yhfp_like Yhfp put 33.2 1.2E+02 0.0027 28.2 6.5 49 122-182 148-196 (326)
238 PRK07677 short chain dehydroge 33.1 3.6E+02 0.0078 24.1 10.6 30 123-154 4-33 (252)
239 PLN02948 phosphoribosylaminoim 33.1 1.9E+02 0.0041 30.5 8.3 63 246-314 465-527 (577)
240 PF00731 AIRC: AIR carboxylase 33.0 1.4E+02 0.003 25.9 6.1 46 246-295 55-100 (150)
241 TIGR00521 coaBC_dfp phosphopan 32.9 65 0.0014 32.3 4.6 36 120-155 185-234 (390)
242 PRK07523 gluconate 5-dehydroge 32.8 3.6E+02 0.0079 24.1 13.7 57 120-185 10-66 (255)
243 PRK07814 short chain dehydroge 32.7 3.2E+02 0.007 24.7 9.1 32 122-155 12-43 (263)
244 PRK12938 acetyacetyl-CoA reduc 32.7 3.5E+02 0.0076 23.9 11.3 54 123-184 6-59 (246)
245 cd08270 MDR4 Medium chain dehy 32.7 2E+02 0.0043 26.4 7.7 48 122-181 134-181 (305)
246 PRK08017 oxidoreductase; Provi 32.6 1.6E+02 0.0035 26.3 6.9 50 123-184 4-53 (256)
247 TIGR01357 aroB 3-dehydroquinat 32.5 3.7E+02 0.008 26.0 9.8 45 231-281 67-115 (344)
248 PF12831 FAD_oxidored: FAD dep 32.3 57 0.0012 32.8 4.2 31 124-156 2-32 (428)
249 cd08281 liver_ADH_like1 Zinc-d 32.2 1.1E+02 0.0024 29.6 6.2 49 122-182 193-241 (371)
250 PLN03154 putative allyl alcoho 32.2 1.1E+02 0.0023 29.7 5.9 49 122-182 160-209 (348)
251 cd08256 Zn_ADH2 Alcohol dehydr 32.2 1.4E+02 0.003 28.5 6.7 49 122-182 176-224 (350)
252 cd01075 NAD_bind_Leu_Phe_Val_D 32.0 1.7E+02 0.0037 26.1 6.9 44 107-152 7-57 (200)
253 PRK07097 gluconate 5-dehydroge 32.0 3.3E+02 0.0072 24.6 9.0 54 122-184 12-65 (265)
254 cd05313 NAD_bind_2_Glu_DH NAD( 31.7 2.7E+02 0.0059 26.2 8.3 47 107-155 19-70 (254)
255 PLN02740 Alcohol dehydrogenase 31.7 1.3E+02 0.0029 29.3 6.6 49 122-182 200-248 (381)
256 PRK11440 putative hydrolase; P 31.7 1.2E+02 0.0026 26.6 5.7 53 102-157 105-157 (188)
257 PRK09620 hypothetical protein; 31.7 76 0.0017 29.3 4.6 25 130-154 27-51 (229)
258 cd08181 PPD-like 1,3-propanedi 31.5 2E+02 0.0044 28.1 7.9 46 231-282 72-133 (357)
259 PF00732 GMC_oxred_N: GMC oxid 31.5 38 0.00083 31.6 2.6 36 247-285 1-36 (296)
260 TIGR00873 gnd 6-phosphoglucona 31.4 5.9E+02 0.013 26.1 12.0 23 132-154 8-30 (467)
261 PRK07035 short chain dehydroge 31.4 3.5E+02 0.0075 24.1 8.9 70 170-255 25-94 (252)
262 cd08233 butanediol_DH_like (2R 31.3 1.6E+02 0.0035 28.0 7.0 50 122-183 174-223 (351)
263 PRK15454 ethanol dehydrogenase 31.1 2.3E+02 0.0051 28.2 8.3 14 246-260 106-119 (395)
264 PRK09257 aromatic amino acid a 31.1 3.6E+02 0.0079 26.3 9.6 17 168-184 132-148 (396)
265 PF05185 PRMT5: PRMT5 arginine 31.1 74 0.0016 32.5 4.8 38 248-285 189-226 (448)
266 PF00185 OTCace: Aspartate/orn 31.1 80 0.0017 27.3 4.4 33 124-156 5-37 (158)
267 PLN02178 cinnamyl-alcohol dehy 31.0 1.4E+02 0.003 29.3 6.6 50 121-182 179-228 (375)
268 COG1167 ARO8 Transcriptional r 30.9 3.1E+02 0.0067 27.9 9.3 75 136-224 166-242 (459)
269 PRK08277 D-mannonate oxidoredu 30.9 1.8E+02 0.0039 26.6 7.0 55 122-185 12-66 (278)
270 TIGR01182 eda Entner-Doudoroff 30.7 2.8E+02 0.0061 25.2 8.0 92 113-226 73-164 (204)
271 PF06506 PrpR_N: Propionate ca 30.6 79 0.0017 27.6 4.3 39 108-154 113-151 (176)
272 PF13460 NAD_binding_10: NADH( 30.5 1E+02 0.0022 26.2 5.0 29 129-157 5-33 (183)
273 PRK03692 putative UDP-N-acetyl 30.3 4.6E+02 0.0099 24.5 10.2 15 170-184 150-164 (243)
274 cd08285 NADP_ADH NADP(H)-depen 30.3 1.5E+02 0.0033 28.2 6.7 48 122-181 168-215 (351)
275 PRK06935 2-deoxy-D-gluconate 3 30.2 4.1E+02 0.0088 23.9 9.6 55 120-184 15-69 (258)
276 PRK06701 short chain dehydroge 30.2 3.5E+02 0.0075 25.2 9.0 32 122-155 48-79 (290)
277 TIGR02415 23BDH acetoin reduct 30.1 3.8E+02 0.0082 23.8 9.0 53 124-184 3-55 (254)
278 cd08192 Fe-ADH7 Iron-containin 30.1 2.5E+02 0.0053 27.6 8.2 24 231-259 70-93 (370)
279 PF13561 adh_short_C2: Enoyl-( 30.0 2.2E+02 0.0047 25.5 7.3 48 131-184 5-52 (241)
280 PRK07109 short chain dehydroge 30.0 3.2E+02 0.007 26.2 8.9 72 170-257 25-96 (334)
281 TIGR03206 benzo_BadH 2-hydroxy 29.9 3.9E+02 0.0085 23.6 11.2 32 122-155 5-36 (250)
282 cd00431 cysteine_hydrolases Cy 29.9 1.5E+02 0.0031 24.9 5.8 40 117-157 106-146 (161)
283 TIGR03531 selenium_SpcS O-phos 29.8 3.7E+02 0.008 27.5 9.5 17 168-184 163-179 (444)
284 cd05280 MDR_yhdh_yhfp Yhdh and 29.6 2.8E+02 0.006 25.6 8.2 48 122-181 148-195 (325)
285 KOG2862 Alanine-glyoxylate ami 29.5 1.7E+02 0.0037 28.8 6.6 46 170-219 108-153 (385)
286 PRK06997 enoyl-(acyl carrier p 29.4 4.4E+02 0.0095 24.0 10.2 32 121-153 7-39 (260)
287 cd08243 quinone_oxidoreductase 29.3 1.5E+02 0.0033 27.1 6.4 49 122-182 144-192 (320)
288 PRK06128 oxidoreductase; Provi 29.3 2.3E+02 0.0049 26.5 7.6 59 120-185 55-113 (300)
289 cd08185 Fe-ADH1 Iron-containin 29.3 2.8E+02 0.006 27.3 8.4 24 231-259 72-95 (380)
290 PLN02586 probable cinnamyl alc 29.3 1.8E+02 0.0039 28.2 7.0 49 122-182 185-233 (360)
291 PRK08636 aspartate aminotransf 29.2 4.8E+02 0.01 25.5 10.2 51 123-185 98-148 (403)
292 PRK09242 tropinone reductase; 29.2 4E+02 0.0087 23.8 9.0 33 121-155 10-42 (257)
293 PRK12827 short chain dehydroge 29.2 4E+02 0.0086 23.4 11.6 30 123-154 9-38 (249)
294 PRK06701 short chain dehydroge 29.0 4.7E+02 0.01 24.3 12.1 11 272-282 216-226 (290)
295 cd06344 PBP1_ABC_ligand_bindin 29.0 4.9E+02 0.011 24.4 13.3 31 120-152 66-96 (332)
296 TIGR03451 mycoS_dep_FDH mycoth 29.0 1.7E+02 0.0038 28.1 6.9 49 122-182 178-226 (358)
297 cd08293 PTGR2 Prostaglandin re 28.9 1.7E+02 0.0037 27.6 6.7 50 122-183 156-207 (345)
298 PRK08217 fabG 3-ketoacyl-(acyl 28.9 4.1E+02 0.0088 23.4 9.1 54 122-184 7-60 (253)
299 PRK05717 oxidoreductase; Valid 28.8 4.3E+02 0.0092 23.7 11.6 32 121-154 11-42 (255)
300 COG1184 GCD2 Translation initi 28.7 2E+02 0.0044 27.9 7.0 59 121-185 120-178 (301)
301 PTZ00354 alcohol dehydrogenase 28.7 1.6E+02 0.0034 27.4 6.3 49 122-182 142-190 (334)
302 TIGR02818 adh_III_F_hyde S-(hy 28.7 1.8E+02 0.0039 28.2 6.9 49 122-182 187-235 (368)
303 PRK05650 short chain dehydroge 28.6 4E+02 0.0086 24.2 8.9 72 170-257 17-88 (270)
304 PRK06114 short chain dehydroge 28.6 4.3E+02 0.0094 23.7 10.9 56 121-184 9-64 (254)
305 PRK06847 hypothetical protein; 28.6 82 0.0018 30.3 4.5 30 123-154 6-35 (375)
306 PRK05579 bifunctional phosphop 28.6 82 0.0018 31.7 4.5 26 130-155 212-237 (399)
307 PRK05653 fabG 3-ketoacyl-(acyl 28.5 4E+02 0.0087 23.2 12.1 54 123-184 7-60 (246)
308 cd06285 PBP1_LacI_like_7 Ligan 28.4 4.3E+02 0.0092 23.5 19.7 36 245-282 174-213 (265)
309 PRK13054 lipid kinase; Reviewe 28.4 1.1E+02 0.0023 29.1 5.2 39 247-286 57-96 (300)
310 PRK07523 gluconate 5-dehydroge 28.3 4E+02 0.0087 23.8 8.8 71 171-257 28-98 (255)
311 cd08246 crotonyl_coA_red croto 28.3 1.5E+02 0.0032 29.0 6.3 49 122-182 195-243 (393)
312 PF06415 iPGM_N: BPG-independe 28.3 1.2E+02 0.0025 28.2 5.1 51 107-157 14-73 (223)
313 COG1064 AdhP Zn-dependent alco 28.1 2E+02 0.0043 28.5 6.9 50 123-185 169-218 (339)
314 PRK08226 short chain dehydroge 28.1 4.2E+02 0.0092 23.7 9.0 31 122-154 8-38 (263)
315 cd08288 MDR_yhdh Yhdh putative 28.0 1.9E+02 0.0042 26.8 6.8 49 122-182 148-196 (324)
316 TIGR00511 ribulose_e2b2 ribose 27.9 1.9E+02 0.0042 27.8 6.8 57 122-186 117-175 (301)
317 PF09370 TIM-br_sig_trns: TIM- 27.9 3.1E+02 0.0067 26.2 7.9 114 106-257 94-223 (268)
318 KOG1198 Zinc-binding oxidoredu 27.9 2.3E+02 0.0051 27.8 7.5 49 122-182 159-207 (347)
319 cd06319 PBP1_ABC_sugar_binding 27.8 4.4E+02 0.0096 23.5 15.2 43 111-154 46-88 (277)
320 PLN02564 6-phosphofructokinase 27.6 7.1E+02 0.015 25.9 11.9 49 109-157 165-215 (484)
321 cd08231 MDR_TM0436_like Hypoth 27.6 1.9E+02 0.0041 27.7 6.8 48 122-182 179-227 (361)
322 PF00670 AdoHcyase_NAD: S-aden 27.5 1.1E+02 0.0023 27.0 4.5 29 122-152 24-52 (162)
323 PRK06114 short chain dehydroge 27.5 4.5E+02 0.0098 23.5 9.0 73 170-257 25-97 (254)
324 PRK08217 fabG 3-ketoacyl-(acyl 27.4 4.3E+02 0.0093 23.3 8.9 12 272-283 184-195 (253)
325 PRK12745 3-ketoacyl-(acyl-carr 27.4 4.4E+02 0.0096 23.4 9.0 55 124-185 5-59 (256)
326 PRK08589 short chain dehydroge 27.4 4.5E+02 0.0097 24.0 9.1 53 122-184 8-60 (272)
327 TIGR03702 lip_kinase_YegS lipi 27.1 1.2E+02 0.0025 28.8 5.1 16 253-268 58-73 (293)
328 cd08551 Fe-ADH iron-containing 27.1 3.1E+02 0.0068 26.8 8.3 48 230-283 68-132 (370)
329 PRK07904 short chain dehydroge 27.0 4.8E+02 0.01 23.6 12.8 33 123-156 10-43 (253)
330 PRK09206 pyruvate kinase; Prov 26.9 6.7E+02 0.015 25.9 10.8 133 136-282 261-402 (470)
331 PTZ00079 NADP-specific glutama 26.9 2.8E+02 0.0062 28.5 8.0 48 107-156 218-270 (454)
332 PF00391 PEP-utilizers: PEP-ut 26.9 1.1E+02 0.0024 23.1 4.0 34 118-154 28-61 (80)
333 PF13450 NAD_binding_8: NAD(P) 26.9 1.2E+02 0.0025 22.2 4.0 23 132-154 5-27 (68)
334 COG1063 Tdh Threonine dehydrog 26.8 1.9E+02 0.0041 28.2 6.7 51 123-185 171-222 (350)
335 COG0026 PurK Phosphoribosylami 26.7 1.1E+02 0.0025 30.5 5.0 32 124-157 4-35 (375)
336 cd08287 FDH_like_ADH3 formalde 26.7 2.2E+02 0.0047 26.9 7.0 49 122-182 170-218 (345)
337 COG1597 LCB5 Sphingosine kinas 26.7 1.5E+02 0.0033 28.4 5.9 75 196-286 21-95 (301)
338 cd08298 CAD2 Cinnamyl alcohol 26.7 2.4E+02 0.0052 26.3 7.2 46 122-180 169-214 (329)
339 PRK05867 short chain dehydroge 26.7 2.5E+02 0.0054 25.2 7.1 10 273-282 183-192 (253)
340 CHL00200 trpA tryptophan synth 26.7 5.5E+02 0.012 24.2 14.1 51 107-158 106-156 (263)
341 COG0159 TrpA Tryptophan syntha 26.7 5.7E+02 0.012 24.4 12.7 50 107-157 109-158 (265)
342 TIGR02964 xanthine_xdhC xanthi 26.6 96 0.0021 28.9 4.4 32 122-155 101-132 (246)
343 cd08169 DHQ-like Dehydroquinat 26.6 6.1E+02 0.013 24.7 11.0 31 249-281 85-117 (344)
344 TIGR03669 urea_ABC_arch urea A 26.4 6.2E+02 0.013 24.7 13.1 139 119-278 67-219 (374)
345 PRK08335 translation initiatio 26.3 3.7E+02 0.008 25.7 8.3 57 122-186 111-169 (275)
346 TIGR00936 ahcY adenosylhomocys 26.3 1.7E+02 0.0038 29.5 6.4 29 122-152 196-224 (406)
347 PF01262 AlaDh_PNT_C: Alanine 26.3 1.9E+02 0.004 25.0 5.9 49 123-184 22-70 (168)
348 cd06273 PBP1_GntR_like_1 This 26.3 4.6E+02 0.01 23.2 19.7 35 245-281 177-215 (268)
349 PRK08226 short chain dehydroge 26.1 2.3E+02 0.0051 25.5 6.9 16 111-126 21-36 (263)
350 PRK12778 putative bifunctional 26.1 2.2E+02 0.0047 30.9 7.6 57 122-183 571-628 (752)
351 PRK05599 hypothetical protein; 26.1 3.4E+02 0.0073 24.4 7.9 28 124-154 4-31 (246)
352 PRK06015 keto-hydroxyglutarate 26.0 5E+02 0.011 23.5 8.9 91 113-225 69-159 (201)
353 PRK08535 translation initiatio 26.0 2.2E+02 0.0047 27.6 6.8 57 122-186 122-180 (310)
354 TIGR00438 rrmJ cell division p 26.0 1.7E+02 0.0037 25.5 5.7 33 248-283 35-67 (188)
355 PRK12779 putative bifunctional 25.9 2.2E+02 0.0047 32.1 7.6 33 122-156 448-480 (944)
356 PLN02743 nicotinamidase 25.9 1.3E+02 0.0029 27.9 5.1 41 116-157 146-195 (239)
357 TIGR01751 crot-CoA-red crotony 25.9 1.6E+02 0.0034 29.0 6.0 49 122-182 191-239 (398)
358 COG0826 Collagenase and relate 25.8 6.5E+02 0.014 24.8 10.9 96 169-278 18-118 (347)
359 COG0623 FabI Enoyl-[acyl-carri 25.8 4.5E+02 0.0097 24.9 8.4 26 259-284 122-148 (259)
360 cd05188 MDR Medium chain reduc 25.7 2E+02 0.0044 25.4 6.3 47 122-181 136-182 (271)
361 PRK12481 2-deoxy-D-gluconate 3 25.7 4.5E+02 0.0098 23.6 8.7 70 170-257 25-94 (251)
362 PRK06194 hypothetical protein; 25.7 4.7E+02 0.01 23.8 8.9 73 170-258 23-95 (287)
363 PRK13018 cell division protein 25.6 1.7E+02 0.0038 29.2 6.2 47 232-286 104-155 (378)
364 COG0078 ArgF Ornithine carbamo 25.6 2.4E+02 0.0051 27.5 6.8 60 122-185 154-214 (310)
365 COG0299 PurN Folate-dependent 25.5 5.2E+02 0.011 23.6 11.0 91 128-239 8-101 (200)
366 COG0299 PurN Folate-dependent 25.4 1.4E+02 0.0031 27.2 5.0 43 249-291 3-45 (200)
367 cd06309 PBP1_YtfQ_like Peripla 25.4 4.9E+02 0.011 23.3 16.6 47 108-155 43-89 (273)
368 cd08297 CAD3 Cinnamyl alcohol 25.4 2.5E+02 0.0054 26.4 7.2 49 122-182 167-215 (341)
369 TIGR03799 NOD_PanD_pyr putativ 25.4 4.7E+02 0.01 27.3 9.5 57 121-185 160-241 (522)
370 CHL00194 ycf39 Ycf39; Provisio 25.3 1.9E+02 0.0041 27.3 6.3 31 124-156 4-34 (317)
371 cd08240 6_hydroxyhexanoate_dh_ 25.3 2.6E+02 0.0056 26.5 7.3 48 122-181 177-224 (350)
372 PRK06172 short chain dehydroge 25.3 4.9E+02 0.011 23.2 9.3 70 170-255 24-93 (253)
373 TIGR01743 purR_Bsub pur operon 25.2 5.7E+02 0.012 24.3 9.3 46 229-282 115-160 (268)
374 cd06294 PBP1_ycjW_transcriptio 25.2 4.8E+02 0.01 23.1 21.4 35 245-281 182-220 (270)
375 PF01081 Aldolase: KDPG and KH 25.1 3.2E+02 0.0069 24.7 7.3 92 112-226 72-164 (196)
376 PRK08277 D-mannonate oxidoredu 25.1 5E+02 0.011 23.6 9.0 71 170-256 27-97 (278)
377 PF13738 Pyr_redox_3: Pyridine 25.0 1.1E+02 0.0023 26.6 4.1 33 122-156 168-200 (203)
378 cd08242 MDR_like Medium chain 25.0 2.1E+02 0.0045 26.7 6.4 47 122-181 157-203 (319)
379 PRK06181 short chain dehydroge 25.0 4.9E+02 0.011 23.3 8.8 53 124-185 5-57 (263)
380 PF01494 FAD_binding_3: FAD bi 24.9 1E+02 0.0022 28.7 4.3 32 124-157 4-35 (356)
381 PRK12266 glpD glycerol-3-phosp 24.9 94 0.002 32.0 4.3 32 121-155 7-38 (508)
382 cd08277 liver_alcohol_DH_like 24.8 2.1E+02 0.0046 27.5 6.7 49 122-182 186-234 (365)
383 cd06280 PBP1_LacI_like_4 Ligan 24.8 5E+02 0.011 23.1 20.2 35 245-281 171-209 (263)
384 PRK13656 trans-2-enoyl-CoA red 24.7 7.4E+02 0.016 25.1 12.9 38 211-257 105-142 (398)
385 KOG1238 Glucose dehydrogenase/ 24.7 1.3E+02 0.0027 32.2 5.2 38 245-286 56-94 (623)
386 cd08284 FDH_like_2 Glutathione 24.7 3.3E+02 0.0071 25.6 7.8 47 122-180 169-215 (344)
387 cd05283 CAD1 Cinnamyl alcohol 24.6 2.6E+02 0.0056 26.5 7.1 48 122-182 171-218 (337)
388 PRK08213 gluconate 5-dehydroge 24.6 5.1E+02 0.011 23.2 9.1 70 170-255 29-98 (259)
389 PRK08306 dipicolinate synthase 24.5 2.1E+02 0.0046 27.3 6.4 46 122-180 153-198 (296)
390 COG0436 Aspartate/tyrosine/aro 24.5 2.5E+02 0.0055 27.9 7.2 49 123-184 92-141 (393)
391 COG1212 KdsB CMP-2-keto-3-deox 24.4 3.9E+02 0.0084 25.1 7.7 51 170-224 56-106 (247)
392 PLN02827 Alcohol dehydrogenase 24.2 2.1E+02 0.0046 28.0 6.5 49 122-182 195-243 (378)
393 cd06312 PBP1_ABC_sugar_binding 24.0 5.3E+02 0.011 23.1 21.1 205 106-336 43-262 (271)
394 PRK13957 indole-3-glycerol-pho 24.0 3.7E+02 0.008 25.3 7.7 66 110-186 114-180 (247)
395 cd00288 Pyruvate_Kinase Pyruva 24.0 6.7E+02 0.015 26.0 10.2 133 136-282 262-407 (480)
396 PRK08265 short chain dehydroge 24.0 3.6E+02 0.0077 24.4 7.7 31 122-154 8-38 (261)
397 cd08186 Fe-ADH8 Iron-containin 23.9 3.3E+02 0.0071 26.9 7.8 24 231-259 73-96 (383)
398 cd02202 FtsZ_type2 FtsZ is a G 23.8 2.1E+02 0.0046 28.1 6.4 54 231-286 83-141 (349)
399 COG2303 BetA Choline dehydroge 23.7 1.1E+02 0.0024 31.9 4.6 38 245-286 6-43 (542)
400 PRK06603 enoyl-(acyl carrier p 23.7 5.5E+02 0.012 23.3 10.7 31 122-153 10-41 (260)
401 cd01540 PBP1_arabinose_binding 23.7 5.5E+02 0.012 23.2 16.0 43 111-154 45-87 (289)
402 cd08245 CAD Cinnamyl alcohol d 23.7 2.9E+02 0.0064 25.7 7.2 48 122-182 164-211 (330)
403 PRK06720 hypothetical protein; 23.7 4.8E+02 0.01 22.5 8.8 32 120-153 16-47 (169)
404 PRK06019 phosphoribosylaminoim 23.6 1.4E+02 0.0031 29.3 5.2 31 123-155 4-34 (372)
405 PRK09126 hypothetical protein; 23.6 1E+02 0.0022 29.9 4.2 32 122-156 5-36 (392)
406 PRK09860 putative alcohol dehy 23.6 3.8E+02 0.0083 26.5 8.2 35 246-282 88-139 (383)
407 PF01134 GIDA: Glucose inhibit 23.5 1.1E+02 0.0024 30.8 4.3 28 124-153 2-29 (392)
408 PRK10014 DNA-binding transcrip 23.5 6.1E+02 0.013 23.7 20.0 35 245-281 242-289 (342)
409 PTZ00082 L-lactate dehydrogena 23.4 6.8E+02 0.015 24.2 14.5 32 123-156 8-39 (321)
410 PRK06077 fabG 3-ketoacyl-(acyl 23.4 3E+02 0.0065 24.4 6.9 55 123-184 8-62 (252)
411 TIGR02685 pter_reduc_Leis pter 23.2 5.6E+02 0.012 23.1 10.2 29 124-154 5-33 (267)
412 TIGR01292 TRX_reduct thioredox 22.9 1.2E+02 0.0026 27.8 4.3 29 124-154 3-31 (300)
413 PRK00002 aroB 3-dehydroquinate 22.8 7.1E+02 0.015 24.2 10.8 96 171-281 24-126 (358)
414 TIGR02817 adh_fam_1 zinc-bindi 22.8 2.2E+02 0.0047 26.7 6.1 49 122-182 150-199 (336)
415 PRK07666 fabG 3-ketoacyl-(acyl 22.7 3.1E+02 0.0067 24.2 6.9 12 272-283 177-188 (239)
416 PF00218 IGPS: Indole-3-glycer 22.7 3.6E+02 0.0078 25.4 7.4 71 105-186 115-187 (254)
417 cd06320 PBP1_allose_binding Pe 22.7 5.6E+02 0.012 22.9 16.9 44 110-154 47-90 (275)
418 PRK06128 oxidoreductase; Provi 22.7 6.2E+02 0.014 23.5 9.4 73 170-256 72-144 (300)
419 KOG1500 Protein arginine N-met 22.6 1.7E+02 0.0037 29.2 5.2 41 247-290 177-217 (517)
420 PLN02834 3-dehydroquinate synt 22.6 8.2E+02 0.018 24.8 11.2 98 171-281 92-197 (433)
421 PRK12745 3-ketoacyl-(acyl-carr 22.6 5.5E+02 0.012 22.8 9.6 12 272-283 181-192 (256)
422 cd06356 PBP1_Amide_Urea_BP_lik 22.5 6.6E+02 0.014 23.7 14.1 33 245-278 186-219 (334)
423 PLN02350 phosphogluconate dehy 22.5 8.8E+02 0.019 25.2 11.5 22 132-153 15-36 (493)
424 cd08259 Zn_ADH5 Alcohol dehydr 22.5 3.4E+02 0.0075 25.0 7.4 47 122-180 164-210 (332)
425 PRK09545 znuA high-affinity zi 22.5 5.2E+02 0.011 24.8 8.7 94 137-239 212-307 (311)
426 cd08176 LPO Lactadehyde:propan 22.5 3.9E+02 0.0084 26.3 8.0 46 231-282 74-136 (377)
427 PRK08274 tricarballylate dehyd 22.5 1.2E+02 0.0025 30.7 4.4 30 121-153 5-34 (466)
428 TIGR02853 spore_dpaA dipicolin 22.4 2.5E+02 0.0053 26.8 6.4 45 108-154 133-182 (287)
429 cd08171 GlyDH-like2 Glycerol d 22.4 3.9E+02 0.0085 25.9 7.9 33 246-281 78-110 (345)
430 PRK07792 fabG 3-ketoacyl-(acyl 22.4 6.5E+02 0.014 23.6 10.2 57 121-185 13-69 (306)
431 PRK09422 ethanol-active dehydr 22.3 3.1E+02 0.0067 25.7 7.1 49 122-183 164-213 (338)
432 PRK07454 short chain dehydroge 22.3 5.4E+02 0.012 22.6 8.8 32 123-155 8-39 (241)
433 TIGR02638 lactal_redase lactal 22.2 4.4E+02 0.0096 25.9 8.4 25 231-260 75-99 (379)
434 PF00156 Pribosyltran: Phospho 22.2 73 0.0016 25.4 2.4 38 229-269 12-49 (125)
435 TIGR03844 cysteate_syn cysteat 22.2 35 0.00077 34.2 0.6 56 62-127 86-147 (398)
436 PRK05571 ribose-5-phosphate is 22.2 4.3E+02 0.0092 22.8 7.2 61 109-186 46-110 (148)
437 PRK08589 short chain dehydroge 22.2 4.3E+02 0.0093 24.1 7.9 71 170-257 23-93 (272)
438 PF02887 PK_C: Pyruvate kinase 22.1 3E+02 0.0066 22.0 6.1 42 230-282 7-48 (117)
439 KOG1529 Mercaptopyruvate sulfu 22.1 1.4E+02 0.0031 28.7 4.6 50 226-277 216-266 (286)
440 cd08190 HOT Hydroxyacid-oxoaci 22.1 4.6E+02 0.0099 26.3 8.5 25 231-260 69-93 (414)
441 TIGR02415 23BDH acetoin reduct 22.0 5.6E+02 0.012 22.7 9.4 41 111-153 15-55 (254)
442 PRK06753 hypothetical protein; 22.0 1.3E+02 0.0028 29.0 4.5 29 124-154 3-31 (373)
443 cd08244 MDR_enoyl_red Possible 22.0 3E+02 0.0065 25.4 6.9 47 122-180 144-190 (324)
444 PRK07121 hypothetical protein; 22.0 1.2E+02 0.0026 31.0 4.4 30 121-153 21-50 (492)
445 cd05284 arabinose_DH_like D-ar 21.9 2.3E+02 0.0049 26.6 6.1 47 122-181 169-216 (340)
446 PRK06552 keto-hydroxyglutarate 21.9 5.7E+02 0.012 23.2 8.4 91 113-226 81-171 (213)
447 PRK06481 fumarate reductase fl 21.9 1.1E+02 0.0025 31.4 4.3 31 120-153 61-91 (506)
448 COG1335 PncA Amidases related 21.9 2.1E+02 0.0046 25.1 5.6 53 102-158 117-170 (205)
449 cd08550 GlyDH-like Glycerol_de 21.9 4.3E+02 0.0093 25.7 8.1 75 171-260 16-90 (349)
450 PRK05434 phosphoglyceromutase; 21.8 5.9E+02 0.013 26.6 9.4 49 108-156 97-154 (507)
451 PRK12825 fabG 3-ketoacyl-(acyl 21.8 5.4E+02 0.012 22.4 11.5 33 123-156 8-40 (249)
452 PRK08849 2-octaprenyl-3-methyl 21.7 1.2E+02 0.0027 29.5 4.3 30 122-154 5-34 (384)
453 PRK11749 dihydropyrimidine deh 21.7 3.6E+02 0.0078 27.1 7.8 56 122-182 274-330 (457)
454 cd05211 NAD_bind_Glu_Leu_Phe_V 21.7 3.9E+02 0.0084 24.3 7.3 47 107-155 4-55 (217)
455 cd08179 NADPH_BDH NADPH-depend 21.7 2.7E+02 0.0059 27.4 6.7 53 198-260 42-94 (375)
456 PRK12939 short chain dehydroge 21.6 5.6E+02 0.012 22.5 9.1 71 170-256 24-94 (250)
457 PF02527 GidB: rRNA small subu 21.6 51 0.0011 29.5 1.4 39 250-290 51-89 (184)
458 PRK06500 short chain dehydroge 21.6 2.9E+02 0.0063 24.4 6.5 31 122-154 8-38 (249)
459 COG0076 GadB Glutamate decarbo 21.5 3.9E+02 0.0085 27.4 8.0 58 120-185 119-186 (460)
460 cd06292 PBP1_LacI_like_10 Liga 21.5 5.8E+02 0.013 22.7 19.9 32 247-280 182-217 (273)
461 TIGR01377 soxA_mon sarcosine o 21.4 1.3E+02 0.0028 28.9 4.4 27 126-154 5-31 (380)
462 COG1751 Uncharacterized conser 21.4 5.7E+02 0.012 22.6 8.2 79 104-184 11-90 (186)
463 TIGR01831 fabG_rel 3-oxoacyl-( 21.3 5.6E+02 0.012 22.5 9.1 54 124-185 2-55 (239)
464 cd01019 ZnuA Zinc binding prot 21.3 6.9E+02 0.015 23.5 10.1 94 137-239 188-283 (286)
465 PRK07097 gluconate 5-dehydroge 21.3 6.1E+02 0.013 22.8 16.4 13 272-284 180-192 (265)
466 PRK14031 glutamate dehydrogena 21.3 4.9E+02 0.011 26.7 8.5 48 106-155 208-260 (444)
467 PF00290 Trp_syntA: Tryptophan 21.2 7E+02 0.015 23.5 13.0 15 138-152 107-121 (259)
468 PRK12550 shikimate 5-dehydroge 21.2 2.5E+02 0.0055 26.6 6.1 31 122-154 123-153 (272)
469 PRK07832 short chain dehydroge 21.2 4.7E+02 0.01 23.8 7.9 29 124-154 4-32 (272)
470 PRK15317 alkyl hydroperoxide r 21.1 1.2E+02 0.0027 31.2 4.3 29 124-154 214-242 (517)
471 TIGR01120 rpiB ribose 5-phosph 21.1 2.3E+02 0.0049 24.4 5.2 60 111-186 46-108 (143)
472 TIGR01813 flavo_cyto_c flavocy 21.0 1.2E+02 0.0027 30.1 4.2 27 125-153 3-30 (439)
473 PRK09492 treR trehalose repres 20.9 6.6E+02 0.014 23.1 19.7 33 246-280 232-265 (315)
474 PRK07060 short chain dehydroge 20.9 2.9E+02 0.0063 24.4 6.3 31 122-154 11-41 (245)
475 PLN02464 glycerol-3-phosphate 20.8 1.2E+02 0.0027 32.2 4.3 31 121-154 72-102 (627)
476 PRK10083 putative oxidoreducta 20.8 3.1E+02 0.0067 25.8 6.8 49 122-182 162-211 (339)
477 TIGR03325 BphB_TodD cis-2,3-di 20.8 4.1E+02 0.0088 24.0 7.4 31 122-154 7-37 (262)
478 PF02401 LYTB: LytB protein; 20.7 2.4E+02 0.0052 27.1 5.8 36 117-152 206-241 (281)
479 PRK05476 S-adenosyl-L-homocyst 20.7 2.5E+02 0.0054 28.6 6.3 29 122-152 213-241 (425)
480 PRK07832 short chain dehydroge 20.7 6.3E+02 0.014 22.9 8.7 71 171-257 18-89 (272)
481 KOG0023 Alcohol dehydrogenase, 20.7 4.4E+02 0.0096 26.1 7.6 45 130-185 190-234 (360)
482 KOG1468 Predicted translation 20.7 1.1E+02 0.0024 29.6 3.4 39 135-185 256-294 (354)
483 PRK13369 glycerol-3-phosphate 20.7 1.3E+02 0.0028 30.9 4.3 32 121-155 7-38 (502)
484 PRK05855 short chain dehydroge 20.6 5.3E+02 0.012 26.1 8.9 70 170-255 332-401 (582)
485 cd01543 PBP1_XylR Ligand-bindi 20.6 2.5E+02 0.0054 25.2 5.9 34 246-281 171-208 (265)
486 cd07766 DHQ_Fe-ADH Dehydroquin 20.5 7.4E+02 0.016 23.5 11.3 96 171-281 16-112 (332)
487 PRK07114 keto-hydroxyglutarate 20.5 4.4E+02 0.0096 24.3 7.4 86 113-221 84-169 (222)
488 PRK14057 epimerase; Provisiona 20.5 4.4E+02 0.0096 24.9 7.5 34 144-185 189-222 (254)
489 cd08290 ETR 2-enoyl thioester 20.5 3.1E+02 0.0066 25.8 6.7 54 122-183 148-201 (341)
490 PRK07494 2-octaprenyl-6-methox 20.4 1.2E+02 0.0027 29.3 4.0 31 122-155 9-39 (388)
491 PRK15481 transcriptional regul 20.4 8.3E+02 0.018 24.1 10.9 18 168-185 177-194 (431)
492 PF03807 F420_oxidored: NADP o 20.4 3.8E+02 0.0082 20.1 6.5 45 127-182 5-52 (96)
493 PRK12809 putative oxidoreducta 20.3 3E+02 0.0065 29.3 7.1 61 122-184 311-381 (639)
494 TIGR02114 coaB_strep phosphopa 20.3 1.6E+02 0.0035 27.0 4.5 25 129-153 22-46 (227)
495 TIGR01963 PHB_DH 3-hydroxybuty 20.2 6E+02 0.013 22.4 10.9 30 124-155 5-34 (255)
496 PF12847 Methyltransf_18: Meth 20.2 2.2E+02 0.0047 21.9 4.7 31 249-283 5-35 (112)
497 PRK09242 tropinone reductase; 20.2 6.2E+02 0.014 22.5 12.3 11 272-282 181-191 (257)
498 COG0240 GpsA Glycerol-3-phosph 20.1 1.7E+02 0.0036 28.8 4.7 30 124-155 4-33 (329)
499 TIGR00689 rpiB_lacA_lacB sugar 20.1 2.4E+02 0.0053 24.2 5.2 61 110-186 44-107 (144)
500 PF02826 2-Hacid_dh_C: D-isome 20.1 2.3E+02 0.005 24.6 5.3 116 122-284 37-156 (178)
No 1
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=100.00 E-value=5e-43 Score=326.84 Aligned_cols=232 Identities=41% Similarity=0.649 Sum_probs=209.2
Q ss_pred hcCCCCCcccccCcCCCcccccCCCCCCC--CceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHH
Q 019410 31 HLAPIPSHVFSLGHFPTPIHKWNLPNLPH--NTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRK 108 (341)
Q Consensus 31 ~~~~~~~~~~~~~~~~TPl~~~~l~~L~~--g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rk 108 (341)
+|+.+| |+.+...||||++ ++++++ |++||+| |||++++.+||||+||
T Consensus 2 ~l~rf~--R~~l~~~pTPiq~--L~rls~~lg~eiYiK--------------------------RDD~t~l~~gGNK~RK 51 (323)
T COG2515 2 NLSRFP--RMELIFGPTPIQK--LPRLSAHLGVEIYIK--------------------------RDDLTGLAFGGNKIRK 51 (323)
T ss_pred CcccCC--ccccCCCCChhhh--HHHHHHhcCeEEEEE--------------------------cccccccccCccHHHH
Confidence 578899 7889999999999 898888 8999999 9999999999999999
Q ss_pred HHHHHHHHHHcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCccc
Q 019410 109 LEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEY 188 (341)
Q Consensus 109 l~~ll~~A~~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~ 188 (341)
++|++.+|..+|++++||+||.||||.+++|++|+++|++|++++++.. + ++..++|+.+.+.+|++++.++.+.+
T Consensus 52 Lefll~eal~~g~dTlvT~GgiQSNh~r~tAavA~~lGl~~v~ile~~~---~-~y~~ngn~Ll~~l~G~~~~~~~~~~d 127 (323)
T COG2515 52 LEFLLGEALRKGADTLVTYGGIQSNHVRQTAAVAAKLGLKCVLILENIE---A-NYLLNGNLLLSKLMGAEVRAVDAGTD 127 (323)
T ss_pred HHHHHhhhhhcCCcEEEEecccchhHHHHHHHHHHhcCCcEEEEEeccc---c-ccccccchhhhhhcCceEEEecCCCC
Confidence 9999999999999999999999999999999999999999999999876 2 45568999999999999999997543
Q ss_pred cccCcHHHHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHh
Q 019410 189 SKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSW 268 (341)
Q Consensus 189 ~~~~~~~~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k 268 (341)
. .....++.+++++++++.++|+||.|++|+.+..||..++.||.+|... . .++|.||+++|||||.||++.++.
T Consensus 128 ~--~~~~~~~~~~e~~~~~g~kpyvIp~GG~~~~g~lGyv~~a~Ei~~Q~~~--~-~~fD~vVva~gs~gT~AGl~~g~~ 202 (323)
T COG2515 128 I--GINASAEELAEEVRKQGGKPYVIPEGGSSPLGALGYVRLALEIAEQAEQ--L-LKFDSVVVAPGSGGTHAGLLVGLA 202 (323)
T ss_pred h--hhchhhHHHHHHHHhcCCCCcEeccCCcCccccccHHHHHHHHHHHHhh--c-cCCCEEEEeCCCcchHHHHHHHhh
Confidence 2 1234557778888888889999999999999999999999999999973 1 579999999999999999999999
Q ss_pred cCCCCCeEEEEeeCCCCccchHhHHHHhhcccC
Q 019410 269 LGTLKAKVHAFSVCDDPDYFYDYTQGLLDGLNA 301 (341)
Q Consensus 269 ~~~~~~rVigVe~~g~~~~~~~~i~~l~~~~~~ 301 (341)
..+++++||||.+.++++++.+++..|.+..+.
T Consensus 203 ~~~~~~~ViG~~v~~~~~~~~~qv~~L~~~~a~ 235 (323)
T COG2515 203 QLGPDVEVIGIDVSADPEKLKEQVLNLAQATAE 235 (323)
T ss_pred hccCCCceEEEeecCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998887443
No 2
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=100.00 E-value=3.7e-41 Score=326.44 Aligned_cols=258 Identities=40% Similarity=0.574 Sum_probs=206.3
Q ss_pred cCCCCCcccccCcCCCcccccCCCCCCC--CceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHH
Q 019410 32 LAPIPSHVFSLGHFPTPIHKWNLPNLPH--NTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKL 109 (341)
Q Consensus 32 ~~~~~~~~~~~~~~~TPl~~~~l~~L~~--g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl 109 (341)
+..+| ++.+..++|||++ ++.|++ |.+||+| |||+++...||||+|++
T Consensus 3 ~~~~~--~~~~~~~~TPl~~--~~~l~~~~g~~i~~K--------------------------~E~lnp~g~gs~K~R~~ 52 (331)
T PRK03910 3 LARFP--RLELAGLPTPLEP--LPRLSAALGPDIYIK--------------------------RDDLTGLALGGNKTRKL 52 (331)
T ss_pred cCcCC--CccccCCCCCceE--hhhhhHhhCCcEEEE--------------------------eccCCCCCCCchHHHHH
Confidence 45667 6888999999999 777766 7899999 88887766689999999
Q ss_pred HHHHHHHHHcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCcccc
Q 019410 110 EFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYS 189 (341)
Q Consensus 110 ~~ll~~A~~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~ 189 (341)
.+++.+++++|.++|||+|+++||||+|+|++|+.+|++|+||||...+..+..+...+|+..++.+||+|+.++..++
T Consensus 53 ~~~l~~a~~~g~~~vvt~g~s~gN~g~alA~~a~~~G~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~Ga~vi~~~~~~~- 131 (331)
T PRK03910 53 EFLLADALAQGADTLITAGAIQSNHARQTAAAAAKLGLKCVLLLENPVPTEAENYLANGNVLLDDLFGAEIHVVPAGTD- 131 (331)
T ss_pred HHHHHHHHHcCCCEEEEcCcchhHHHHHHHHHHHHhCCcEEEEEcCCCCcccccccCCCcHHHHHHcCCEEEEeCccch-
Confidence 9999999999999999998899999999999999999999999998876322101123678999999999999986421
Q ss_pred ccCcHHHHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhc
Q 019410 190 KIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWL 269 (341)
Q Consensus 190 ~~~~~~~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~ 269 (341)
..+..+.+++++.++++..|++|+|+.|+.+.+||.+++.||++|+.. .+..||+||+|+|||||++|++.++++
T Consensus 132 ---~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ei~~q~~~--~~~~~d~vv~~vGtGgt~~Gi~~~~k~ 206 (331)
T PRK03910 132 ---MDAQLEELAEELRAQGRRPYVIPVGGSNALGALGYVACALEIAQQLAE--GGVDFDAVVVASGSGGTHAGLAAGLAA 206 (331)
T ss_pred ---HHHHHHHHHHHHHHcCCceEEECCCCCCchhHHHHHHHHHHHHHHHHh--cCCCCCEEEEeCCcHHHHHHHHHHHHH
Confidence 122334556666665445688999999999999999999999999963 123699999999999999999999999
Q ss_pred CCCCCeEEEEeeCCCCccchHhH----HHHhhcccCC------------CCCCceEEeccchHHHHHHHHHH
Q 019410 270 GTLKAKVHAFSVCDDPDYFYDYT----QGLLDGLNAG------------VDSRDIVNIQNVSVYMTFKNILM 325 (341)
Q Consensus 270 ~~~~~rVigVe~~g~~~~~~~~i----~~l~~~~~~~------------~~~~~iv~v~d~~~~~~~~~~~~ 325 (341)
.+++++||||+++++..+....+ ..+.++++.. -..++++.|.|.+.+.+.+.++.
T Consensus 207 ~~~~~~vigVe~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~ 278 (331)
T PRK03910 207 LGPDIPVIGVTVSRSAAEQEPKVAKLAQATAELLGLPTEIPRADIRLWDDYVGPGYGVPTDEMLEAVKLLAR 278 (331)
T ss_pred hCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHcCCCccCCcccEEEEcCCCCCCCCCCCHHHHHHHHHHHH
Confidence 99999999999998766544332 3333333211 12457899999999999888764
No 3
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.9e-41 Score=318.89 Aligned_cols=235 Identities=19% Similarity=0.117 Sum_probs=199.2
Q ss_pred ccCcCCCcccccCCCCCCC--CceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHHHHHH
Q 019410 41 SLGHFPTPIHKWNLPNLPH--NTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMADAVA 118 (341)
Q Consensus 41 ~~~~~~TPl~~~~l~~L~~--g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~~A~~ 118 (341)
...+++|||++ |.+++. +++||+| +|++||+||+ |||.+.+|+.+|++
T Consensus 6 ~~~iG~TPlvr--L~~~~~~~~~~i~~K-------lE~~NP~gSv---------------------KDR~A~~mI~~Ae~ 55 (300)
T COG0031 6 LDLIGNTPLVR--LNRLSPGTGVEIYAK-------LESFNPGGSV---------------------KDRIALYMIEDAEK 55 (300)
T ss_pred HHHhCCCCcEe--ecccCCCCCceEEEE-------hhhcCCCCch---------------------hHHHHHHHHHHHHH
Confidence 34458999999 777766 5899999 9999997765 99999999999999
Q ss_pred cCC----CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECC-ccccccCc
Q 019410 119 QGA----DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISK-EEYSKIGS 193 (341)
Q Consensus 119 ~g~----~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~-~~~~~~~~ 193 (341)
+|. ++||. +|+||+|++||++|+.+|+|+++|||++++ ..+.+++++|||+|++++. ..+ .
T Consensus 56 ~G~l~pG~tIVE--~TSGNTGI~LA~vaa~~Gy~~iivmP~~~S--------~er~~~l~a~GAevi~t~~~~g~----~ 121 (300)
T COG0031 56 RGLLKPGGTIVE--ATSGNTGIALAMVAAAKGYRLIIVMPETMS--------QERRKLLRALGAEVILTPGAPGN----M 121 (300)
T ss_pred cCCCCCCCEEEE--cCCChHHHHHHHHHHHcCCcEEEEeCCCCC--------HHHHHHHHHcCCEEEEcCCCCCc----h
Confidence 983 67774 688999999999999999999999999886 3579999999999999996 221 2
Q ss_pred HHHHHHHHHHHHHhCCCcEEeCCCCCchhHHH-HHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcCCC
Q 019410 194 VTLTNILKEKLLKEGRRPYVIPVGGSNSIGTW-GYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTL 272 (341)
Q Consensus 194 ~~~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~-G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~~~ 272 (341)
....++ ++++.++.++.++++.|+.||.+.. +|.+++.||++|++ +.+|+||+++|||||++|+++++|+..|
T Consensus 122 ~~a~~~-a~el~~~~p~~~~~~~Qf~NpaN~~aH~~tT~~EI~~~~~-----g~~d~fVagvGTGGTitGvar~Lk~~~p 195 (300)
T COG0031 122 KGAIER-AKELAAEIPGYAVWLNQFENPANPEAHYETTGPEIWQQTD-----GKVDAFVAGVGTGGTITGVARYLKERNP 195 (300)
T ss_pred HHHHHH-HHHHHHhCCCceEchhhcCCCccHHHHHhhhHHHHHHHhC-----CCCCEEEEeCCcchhHHHHHHHHHhhCC
Confidence 233333 4556665555577778999999876 56699999999997 4699999999999999999999999999
Q ss_pred CCeEEEEeeCCCCccc----hHhHHHHhhcccCCC----CCCceEEeccchHHHHHHHHHH
Q 019410 273 KAKVHAFSVCDDPDYF----YDYTQGLLDGLNAGV----DSRDIVNIQNVSVYMTFKNILM 325 (341)
Q Consensus 273 ~~rVigVe~~g~~~~~----~~~i~~l~~~~~~~~----~~~~iv~v~d~~~~~~~~~~~~ 325 (341)
+++|++||+.+++.+. .++|+++..++.+.. .+|+++.|.|.+++.+.+.++.
T Consensus 196 ~i~iv~vdP~~S~~~~~G~g~~~i~GIG~~~ip~~~~~~~iD~v~~V~d~~A~~~~r~La~ 256 (300)
T COG0031 196 NVRIVAVDPEGSVLLSGGEGPHKIEGIGAGFVPENLDLDLIDEVIRVSDEEAIATARRLAR 256 (300)
T ss_pred CcEEEEECCCCCcccCCCCCCcccCCCCCCcCCcccccccCceEEEECHHHHHHHHHHHHH
Confidence 9999999999987653 788999999999843 3789999999999999999885
No 4
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=100.00 E-value=7.1e-41 Score=321.52 Aligned_cols=244 Identities=48% Similarity=0.732 Sum_probs=197.5
Q ss_pred cCcCCCcccccCCCCCCC--CceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHHHHHHc
Q 019410 42 LGHFPTPIHKWNLPNLPH--NTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMADAVAQ 119 (341)
Q Consensus 42 ~~~~~TPl~~~~l~~L~~--g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~~A~~~ 119 (341)
+...+|||++ ++.|++ |++||+| |||+++..+||||+|++.+++.+++++
T Consensus 3 ~~~~~TPl~~--~~~l~~~~g~~l~~K--------------------------~E~l~p~~~gs~K~R~~~~~l~~a~~~ 54 (311)
T TIGR01275 3 LIPWPTPIQY--LPRISREIGAEIYIK--------------------------RDDLTGLGIGGNKIRKLEYLLADALSK 54 (311)
T ss_pred CCCCCCccee--chhhhhhcCCeEEEE--------------------------eccCcCCCCCchhHHHHHHHHHHHHHc
Confidence 4557899999 777766 7899999 888876556999999999999999999
Q ss_pred CCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCccccccCcHHHHHH
Q 019410 120 GADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNI 199 (341)
Q Consensus 120 g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~ 199 (341)
|+++||++|+++||||+|+|++|+++|++|++|||...+. ..|..++++|||+|++++...|.+. .+.+++
T Consensus 55 g~~~vv~~g~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~-------~~~~~~~~~~Ga~v~~v~~~~~~~~--~~~~~~ 125 (311)
T TIGR01275 55 GADTVITVGAIQSNHARATALAAKKLGLDAVLVLREKEEL-------NGNLLLDKLMGAETRVYSAEEYFEI--MKYAEE 125 (311)
T ss_pred CCCEEEEcCCchhHHHHHHHHHHHHhCCceEEEecCCccC-------CCCHHHHHHcCCEEEEECchhhhhh--HHHHHH
Confidence 9999999988999999999999999999999999986421 3467888999999999986445432 234455
Q ss_pred HHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcCCCCCeEEEE
Q 019410 200 LKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAF 279 (341)
Q Consensus 200 ~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~~~~~rVigV 279 (341)
+++++.++++..|++|+++.|+.+..||.+++.||++|++. +.++|+||+|+|||||++|++.++|+.+++++||||
T Consensus 126 ~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~EI~~q~~~---~~~~D~vv~~vGtGgt~~Gi~~~lk~~~~~~~vigV 202 (311)
T TIGR01275 126 LAEELEKEGRKPYVIPVGGSNSLGTLGYVEAVLEIATQLES---EVKFDSIVVAAGSGGTIAGLSLGLSILNEDIRPVGV 202 (311)
T ss_pred HHHHHHhcCCCeEEECCCCCcHHHHHHHHHHHHHHHHHHhc---CCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCcEEEE
Confidence 55555554445789999999999999999999999999962 136999999999999999999999999999999999
Q ss_pred eeCCCCcc----chHhHHHHhhcccCC----C-----CCCceEEeccchHHHHHHHHHH
Q 019410 280 SVCDDPDY----FYDYTQGLLDGLNAG----V-----DSRDIVNIQNVSVYMTFKNILM 325 (341)
Q Consensus 280 e~~g~~~~----~~~~i~~l~~~~~~~----~-----~~~~iv~v~d~~~~~~~~~~~~ 325 (341)
++.+.... ..+.+++++++++.. + ..++++.|.|.+.+.+.+.++.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~la~ 261 (311)
T TIGR01275 203 AVGRFGEDMTDKFVNLVKEIAEGLEVKASEVIPELDDYSGPGYGKPTSEVAEIVKKVAS 261 (311)
T ss_pred EecccHHHHHHHHHHHHHHHHHHhCCCCCCCEEEECCcccCcCCCCCHHHHHHHHHHHH
Confidence 98765322 223455666666532 1 2456799999999999888865
No 5
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=1.4e-40 Score=322.35 Aligned_cols=223 Identities=40% Similarity=0.704 Sum_probs=186.9
Q ss_pred hcCCCCCcccccCcCCCcccccCCCCCCC--CceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHH
Q 019410 31 HLAPIPSHVFSLGHFPTPIHKWNLPNLPH--NTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRK 108 (341)
Q Consensus 31 ~~~~~~~~~~~~~~~~TPl~~~~l~~L~~--g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rk 108 (341)
.|+.+| |+++..++|||++ +++|++ |++||+| |||++++.+||||+|+
T Consensus 8 ~~~~~~--~~~l~~~~TPl~~--~~~l~~~~g~~v~~K--------------------------~E~l~~~~~gg~K~R~ 57 (329)
T PRK14045 8 LLSKFP--RVELIPWETPIQY--LPNISRELGADVYVK--------------------------RDDLTGLGIGGNKIRK 57 (329)
T ss_pred hhhcCC--CcccCCCCCCccc--chhhHHHhCCeEEEE--------------------------cccccCCCCCcchHHH
Confidence 467788 8899999999999 777775 8899999 9999876678999999
Q ss_pred HHHHHHHHHHcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCc-c
Q 019410 109 LEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKE-E 187 (341)
Q Consensus 109 l~~ll~~A~~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~-~ 187 (341)
+.+++.+|+++|+++||++|+|+||||+|+|++|+.+|++|++|||...+. .+|..+++++||+|+.++.+ .
T Consensus 58 ~~~~l~~a~~~G~~~vv~~~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~-------~~~~~l~~~~Ga~v~~~~~~~~ 130 (329)
T PRK14045 58 LEYLLGDALSRGADVVITVGAVHSNHAFVTGLAAKKLGLDAVLVLRGKEEL-------KGNYLLDKIMGIETRVYEAKDS 130 (329)
T ss_pred HHhHHHHHHHcCCCEEEEeCccHHHHHHHHHHHHHHcCCeEEEEEeCCCCC-------CcCHHHHHHCCCEEEEECCCcc
Confidence 999999999999999999999999999999999999999999999976531 34678889999999988742 2
Q ss_pred ccccCcHHHHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHH
Q 019410 188 YSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGS 267 (341)
Q Consensus 188 ~~~~~~~~~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~ 267 (341)
++ ....+.++++++.++++..|++|+|+.|+.+..||.+.+.||++|+.+ .+.++|+||+|+|||||++|+++++
T Consensus 131 ~~---~~~~~~~~~~~l~~~~~~~~~~p~~~~n~~~~~g~~~~~~EI~~q~~~--~~~~~d~vv~~vGtGGt~aGi~~~l 205 (329)
T PRK14045 131 FE---LMKYAEEVAEELKGEGRKPYIIPPGGASPVGTLGYVRAVGEIATQVKK--LGVRFDSIVVAVGSGGTLAGLSLGL 205 (329)
T ss_pred cc---hHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHHHHHHHHh--cCCCCCEEEEeCCcHHHHHHHHHHH
Confidence 21 112334556666665545788999999999999998888899999973 2246999999999999999999999
Q ss_pred hcCCCCCeEEEEeeCCCCccchHhHHHH
Q 019410 268 WLGTLKAKVHAFSVCDDPDYFYDYTQGL 295 (341)
Q Consensus 268 k~~~~~~rVigVe~~g~~~~~~~~i~~l 295 (341)
+..+|++|||||++.+....+.+++..+
T Consensus 206 k~~~~~~kVigv~~~~~~~~~~~~~~~~ 233 (329)
T PRK14045 206 AILNAEWRVVGIAVGSFGEKMKEKVKNL 233 (329)
T ss_pred HHhCCCCeEEEEEecCCHHHHHHHHHHH
Confidence 9999999999999987666666665554
No 6
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=100.00 E-value=1.7e-40 Score=322.57 Aligned_cols=261 Identities=28% Similarity=0.423 Sum_probs=201.9
Q ss_pred hcCCCCCcccccCcCCCcccccCCCCCCC--C--ceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCC-CCCchH
Q 019410 31 HLAPIPSHVFSLGHFPTPIHKWNLPNLPH--N--TEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGM-QLSGNK 105 (341)
Q Consensus 31 ~~~~~~~~~~~~~~~~TPl~~~~l~~L~~--g--~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~-~~ggnK 105 (341)
++..+| |+.|..++|||++ +++|++ | .+||+| |||+++. .+||||
T Consensus 1 ~~~~~~--~~~l~~g~TPl~~--~~~l~~~~g~~~~l~~K--------------------------~E~~n~~~~~gs~K 50 (337)
T TIGR01274 1 NLSRFP--RYPLTFGPSPIHP--LPRLSQHLGGKVTLYAK--------------------------REDCNSGLAFGGNK 50 (337)
T ss_pred CCCcCC--ccccCCCCCCceE--hHhhHHhcCCCceEEEE--------------------------ccCCcCCcCccchH
Confidence 367788 8899999999999 777765 5 499999 8887643 469999
Q ss_pred hHHHHHHHHHHHHcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECC
Q 019410 106 VRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISK 185 (341)
Q Consensus 106 ~Rkl~~ll~~A~~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~ 185 (341)
+|++.+++.+|+++|+++|+++||++||||+|+|++|+++|++|+||||...+.....+....|+.++++|||+|+.++.
T Consensus 51 ~R~~~~~l~~a~~~G~~~vvs~ggs~gN~g~alA~~a~~~Gl~~~iv~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~v~~ 130 (337)
T TIGR01274 51 TRKLEYLIPDAQAQGCTTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQLSRIMGADVRLDPD 130 (337)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCcchHHHHHHHHHHHcCCcEEEEeccCCCccccchhccchHHHHHHcCCEEEEeCC
Confidence 99999999999999999999999999999999999999999999999998653111000114689999999999999985
Q ss_pred ccccccCcHHHHHHHHHHHHHhCCCcEEeCCCC-CchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHH
Q 019410 186 EEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGG-SNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLS 264 (341)
Q Consensus 186 ~~~~~~~~~~~~~~~a~~l~~~g~~~~~ip~g~-~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~ 264 (341)
. |+. +....++...++++++++..|++|.+. .++.+.+||.+++.||.+|+.+ .+..||+||+|+|||||++|++
T Consensus 131 ~-~~~-~~~~~~~~a~~~~~~~~~~~~~i~~~~~~~~~~~~G~~~~~~Ei~eq~~~--~~~~~D~vvv~vGtGgt~aGl~ 206 (337)
T TIGR01274 131 G-FDI-GHRNSWERALEEVRGAGGKPYPIPAGCSDHPLGGLGFVGFAFEVREQEGE--LGFKFDYVVVCSVTGSTQAGMV 206 (337)
T ss_pred c-ccc-cchHHHHHHHHHHHhcCCceEEeCCCCCCCccchhHHHHHHHHHHHHHHh--cCCCCCEEEEeCCchHhHHHHH
Confidence 3 431 112223333444455433458888874 4799999999999999999863 2346999999999999999999
Q ss_pred HHHhcCCCCCeEEEEeeCCCCccchHhHHH----HhhcccC------------CCCCCceEEeccchHHHHHHHHHH
Q 019410 265 LGSWLGTLKAKVHAFSVCDDPDYFYDYTQG----LLDGLNA------------GVDSRDIVNIQNVSVYMTFKNILM 325 (341)
Q Consensus 265 ~~~k~~~~~~rVigVe~~g~~~~~~~~i~~----l~~~~~~------------~~~~~~iv~v~d~~~~~~~~~~~~ 325 (341)
.+++..++++|||||+++++..+....+.. ++++++. ....++.+.|.|.+.+..++.++.
T Consensus 207 ~~~~~~~~~~~vigV~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~ 283 (337)
T TIGR01274 207 AGFAADGRKDRVIGIDASATPEQTRAQILRIARNTAEKIGLERDITEDDVVLDTRFAYPEYGVPNEGTLEAIRLCAK 283 (337)
T ss_pred HHHHHhCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHhCCCCCcCccceEEeccccCCCcCCCCHHHHHHHHHHHH
Confidence 999999999999999999987664443322 2222221 112457899999999998888765
No 7
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=9.8e-40 Score=317.23 Aligned_cols=260 Identities=30% Similarity=0.466 Sum_probs=198.8
Q ss_pred cCCCCCcccccCcCCCcccccCCCCCCC--C--ceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCC-CCCchHh
Q 019410 32 LAPIPSHVFSLGHFPTPIHKWNLPNLPH--N--TEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGM-QLSGNKV 106 (341)
Q Consensus 32 ~~~~~~~~~~~~~~~TPl~~~~l~~L~~--g--~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~-~~ggnK~ 106 (341)
+..+| ++++..++|||++ +++|++ | .+||+| |||+++. .+||||+
T Consensus 3 ~~~~~--~~~l~~g~TPL~~--~~~l~~~~g~~~~v~~K--------------------------~E~~n~~~~~gs~K~ 52 (337)
T PRK12390 3 LQKFP--RYPLTFGPTPIHP--LKRLSAHLGGKVELYAK--------------------------REDCNSGLAFGGNKT 52 (337)
T ss_pred CCCCC--ccccCCCCCccee--HHHHHHHhCCCCeEEEE--------------------------eCCCCCCCCccchhH
Confidence 56777 8899999999999 677765 6 799999 6666543 4699999
Q ss_pred HHHHHHHHHHHHcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCc
Q 019410 107 RKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKE 186 (341)
Q Consensus 107 Rkl~~ll~~A~~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~ 186 (341)
|++.+++.+|+++|+++|+++||++||||+|+|++|+++|++|++||+..+|.........+|+.++++|||+|+.++.+
T Consensus 53 R~~~~~l~~a~~~G~~~vvs~G~s~GN~g~alA~aa~~~G~~~~iv~~~~~p~~~~~~~~~~~~~~~~~~GA~v~~v~~~ 132 (337)
T PRK12390 53 RKLEYLVPDALAQGADTLVSIGGVQSNHTRQVAAVAAHLGMKCVLVQENWVNYEDAVYDRVGNILLSRIMGADVRLVPDG 132 (337)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHHcCCeEEEEeCCCCCCccchhhccccHHHHHHCCCEEEEeCCC
Confidence 99999999999999999999999999999999999999999999999876652111011245788999999999999863
Q ss_pred cccccCcHHHHHHHHHHHHHhCCCcEEeCCCC-CchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHH
Q 019410 187 EYSKIGSVTLTNILKEKLLKEGRRPYVIPVGG-SNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSL 265 (341)
Q Consensus 187 ~~~~~~~~~~~~~~a~~l~~~g~~~~~ip~g~-~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~ 265 (341)
|+. ...+.++...+.+++.....|.+|.+. .++.+.+||.+++.||++|+.. .+.++|+||+|+|||||++|++.
T Consensus 133 -~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~a~Ei~~q~~~--~~~~~d~vvv~vGtGgtlaGi~~ 208 (337)
T PRK12390 133 -FDI-GIRKSWEDALEDVRAAGGKPYAIPAGASDHPLGGLGFVGFAEEVRAQEAE--LGFKFDYIVVCSVTGSTQAGMVV 208 (337)
T ss_pred -cch-hHHHHHHHHHHHHHhCCCceEEeCCcCCCCCcccHHHHHHHHHHHHHHHh--cCCCCCEEEEecCcchhHHHHHH
Confidence 421 011222333333344333467788774 4688999999999999999753 22369999999999999999999
Q ss_pred HHhcCCCCCeEEEEeeCCCCccchHhHHHH----hhcccCC------------CCCCceEEeccchHHHHHHHHHH
Q 019410 266 GSWLGTLKAKVHAFSVCDDPDYFYDYTQGL----LDGLNAG------------VDSRDIVNIQNVSVYMTFKNILM 325 (341)
Q Consensus 266 ~~k~~~~~~rVigVe~~g~~~~~~~~i~~l----~~~~~~~------------~~~~~iv~v~d~~~~~~~~~~~~ 325 (341)
++++.++++|||||+++++......++... +++.+.+ -..++++.|.|.+.+..++.++.
T Consensus 209 ~~k~~~~~~rvigV~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~vsd~e~~~a~~~la~ 284 (337)
T PRK12390 209 GFAADGRARRVIGIDASAKPEQTRAQVLRIARNTAELVELGRDITEDDVVLDERYAGPEYGLPNEGTLEAIRLCAR 284 (337)
T ss_pred HHHhcCCCceEEEEEecCchHHHHHHHHHHHHHHHHHhCCCCCCChhhEEEecccccCCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998876544332222 2222211 13568999999999999888775
No 8
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=100.00 E-value=1.3e-39 Score=319.65 Aligned_cols=251 Identities=17% Similarity=0.136 Sum_probs=193.5
Q ss_pred CCCCchhhcCCCCC--------cccccCcCCCcccccCCCCCCC--CceEEEeeCCCCCCccccCccchhhHhhhhhccc
Q 019410 24 APPSWASHLAPIPS--------HVFSLGHFPTPIHKWNLPNLPH--NTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQR 93 (341)
Q Consensus 24 ~~p~~~~~~~~~~~--------~~~~~~~~~TPl~~~~l~~L~~--g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~R 93 (341)
.||+|+..+...|. .++.+.+++|||++ ++++++ |++||+| +|++||
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~ig~TPl~~--l~~l~~~~g~~I~~K-------lE~~nP-------------- 85 (368)
T PLN02556 29 GSPSFAQRLRDLPKDLPGTKIKTDASQLIGKTPLVY--LNKVTEGCGAYIAAK-------QEMFQP-------------- 85 (368)
T ss_pred cccccccccchhhhhCCcchhhhhHHHhcCCCccEE--ccccccccCCEEEEE-------ecccCC--------------
Confidence 79999987655444 57788999999999 677765 6899999 555555
Q ss_pred ccccCCCCCchHhHHHHHHHHHHHHcC-----CCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcch
Q 019410 94 DDLSGMQLSGNKVRKLEFLMADAVAQG-----ADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIG 168 (341)
Q Consensus 94 EDl~~~~~ggnK~Rkl~~ll~~A~~~g-----~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~g 168 (341)
+||||+|++.+++.+|+++| +++||+ +|+||||+|+|++|+.+|++|+||||..++ ..
T Consensus 86 -------tGS~KdR~A~~~l~~a~~~G~i~pG~~~vV~--aSsGN~G~alA~~a~~~G~~~~ivvp~~~~--------~~ 148 (368)
T PLN02556 86 -------TSSIKDRPALAMIEDAEKKNLITPGKTTLIE--PTSGNMGISLAFMAAMKGYKMILTMPSYTS--------LE 148 (368)
T ss_pred -------ccchHHHHHHHHHHHHHHcCCcCCCCCEEEE--eCCchHHHHHHHHHHHcCCCEEEEECCCCC--------HH
Confidence 57789999999999999886 467887 578999999999999999999999998875 46
Q ss_pred hHHHHHhCCCEEEEECCccccccCcHHHHHHHHHHHHHhCCCcEEeCCCCCchhHH-HHHHHHHHHHHHHHhcCCCCCCC
Q 019410 169 NLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGT-WGYIEAIKEIEQQLQTGTGGVKF 247 (341)
Q Consensus 169 n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~a~~l~~~g~~~~~ip~g~~n~~~~-~G~~t~a~EI~~Ql~~~~~g~~~ 247 (341)
|+.++++|||+|+.++.. .. ....++. ++++.++.+..| +..++.|+.+. .||.+++.||++|+. ..+
T Consensus 149 k~~~lr~~GA~Vi~~~~~-~~---~~~~~~~-a~~l~~~~~~~~-~~~q~~np~~~~~g~~ttg~EI~eq~~-----~~~ 217 (368)
T PLN02556 149 RRVTMRAFGAELVLTDPT-KG---MGGTVKK-AYELLESTPDAF-MLQQFSNPANTQVHFETTGPEIWEDTL-----GQV 217 (368)
T ss_pred HHHHHHHcCCEEEEECCC-CC---ccHHHHH-HHHHHHhcCCCC-ccCCCCCHHHHHHHHHHHHHHHHHhcC-----CCC
Confidence 899999999999999752 11 1122233 333444332344 34567899987 599999999999974 369
Q ss_pred CEEEEcCCchhHHHHHHHHHhcCCCCCeEEEEeeCCCCcc-----chHhHHHHhhcccCCC----CCCceEEeccchHHH
Q 019410 248 DDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDY-----FYDYTQGLLDGLNAGV----DSRDIVNIQNVSVYM 318 (341)
Q Consensus 248 D~Ivv~vGtGGt~aGl~~~~k~~~~~~rVigVe~~g~~~~-----~~~~i~~l~~~~~~~~----~~~~iv~v~d~~~~~ 318 (341)
|+||+++|||||++|++.++|+.++++|||||++.++... ..+.+.++..++.+.. ..|+++.|+|.+++.
T Consensus 218 D~vV~~vGtGGt~aGv~~~lk~~~p~~kVigVep~~~~~~~~g~~~~~~i~g~g~~~~p~~~~~~~~d~~v~Vsd~ea~~ 297 (368)
T PLN02556 218 DIFVMGIGSGGTVSGVGKYLKSKNPNVKIYGVEPAESNVLNGGKPGPHHITGNGVGFKPDILDMDVMEKVLEVSSEDAVN 297 (368)
T ss_pred CEEEEcCCcchHHHHHHHHHHHhCCCCEEEEEeeCCCccccCCCCCCeeeeeccCCCCccccchhhCCeEEEECHHHHHH
Confidence 9999999999999999999999999999999999886432 1233333332322221 357899999999998
Q ss_pred HHHHHHH
Q 019410 319 TFKNILM 325 (341)
Q Consensus 319 ~~~~~~~ 325 (341)
+++.++.
T Consensus 298 a~r~l~~ 304 (368)
T PLN02556 298 MARELAL 304 (368)
T ss_pred HHHHHHH
Confidence 8887765
No 9
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=100.00 E-value=2.3e-38 Score=303.79 Aligned_cols=247 Identities=34% Similarity=0.473 Sum_probs=188.8
Q ss_pred CcccccCCCCCCC----CceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCC-CCchHhHHHHHHHHHHHHcCC
Q 019410 47 TPIHKWNLPNLPH----NTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQ-LSGNKVRKLEFLMADAVAQGA 121 (341)
Q Consensus 47 TPl~~~~l~~L~~----g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~-~ggnK~Rkl~~ll~~A~~~g~ 121 (341)
|||++ +++|++ +++||+| |||+++.. +||||+|++.+++.+|+++|.
T Consensus 1 TPl~~--~~~l~~~~g~~~~l~~K--------------------------~E~~np~gsfgs~K~R~~~~~l~~a~~~g~ 52 (307)
T cd06449 1 TPIQY--LPRLSEHLGGKVEIYAK--------------------------RDDCNSGLAFGGNKIRKLEYLLPDALAKGA 52 (307)
T ss_pred Ccccc--hhHHHHhhCCCCcEEEe--------------------------cccccCCCCccchHHHHHHHHHHHHHHcCC
Confidence 89999 677765 4699999 66665432 489999999999999999999
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCccccccCcHHHHHHHH
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILK 201 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~a 201 (341)
++||++||++||||+|||++|+.+|++|++|||.+.+.....+...+|+++++++||+|++++...+ +. .....++.+
T Consensus 53 ~~vv~~ggs~GN~g~alA~~a~~~G~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~Ga~v~~~~~~~~-~~-~~~~~~~~~ 130 (307)
T cd06449 53 DTLVTVGGIQSNHTRQVAAVAAKLGLKCVLVQENWVPYSDAVYDRVGNILLSRIMGADVRLVSAGFD-IG-IRKSFEEAA 130 (307)
T ss_pred CEEEECCCchhHHHHHHHHHHHHcCCeEEEEecCCCCcccccccccccHHHHHHCCCEEEEECCcch-hh-HHHHHHHHH
Confidence 9999998899999999999999999999999998775210000113578999999999999986422 21 122233444
Q ss_pred HHHHHhCCCcEEeCCCCC-chhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcCCCCCeEEEEe
Q 019410 202 EKLLKEGRRPYVIPVGGS-NSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFS 280 (341)
Q Consensus 202 ~~l~~~g~~~~~ip~g~~-n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~~~~~rVigVe 280 (341)
++++++.+..|++|.+++ |+.+.+||.+++.||++|+.. .+..+|+||+|+|||||++|++.++++.++++|||+|+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~Ei~~q~~~--~~~~~d~vv~~~GtGgt~~G~~~~~~~~~~~~~ii~V~ 208 (307)
T cd06449 131 EEVEAKGGKPYVIPAGGSEHPLGGLGYVGFVLEIAQQEEE--LGFKFDSIVVCSVTGSTHAGLSVGLAALGRQRRVIGID 208 (307)
T ss_pred HHHHHcCCceEEecCCCCCCcccHHHHHHHHHHHHHHHHh--cCCCCCEEEEeCCchHHHHHHHHHHHhcCCCCeEEEEE
Confidence 445544334688888876 999999999999999999973 23369999999999999999999999999999999999
Q ss_pred eCCCCccchHhHHHHh----hcccC----------CCCCCceEEeccchHHHHHHHHHH
Q 019410 281 VCDDPDYFYDYTQGLL----DGLNA----------GVDSRDIVNIQNVSVYMTFKNILM 325 (341)
Q Consensus 281 ~~g~~~~~~~~i~~l~----~~~~~----------~~~~~~iv~v~d~~~~~~~~~~~~ 325 (341)
+.+........+..+. .+.+. .-..++++.|.|.+.+..++.++.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~ 267 (307)
T cd06449 209 ASAKPEKTKAQVLRIAQAKLAEEGLEVKEEDVVLDDDYAAPEYGIPNDETIEAIKLCAR 267 (307)
T ss_pred ecCchHHHHHHHHHHHHHHHHHcCCCCCcccEEEecCcccCCCCCCCHHHHHHHHHHHH
Confidence 9987665433332221 11111 113567899999999888887764
No 10
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-39 Score=312.73 Aligned_cols=234 Identities=22% Similarity=0.276 Sum_probs=191.2
Q ss_pred ccccCcCCCcccccCCCCCCC--CceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHHHH
Q 019410 39 VFSLGHFPTPIHKWNLPNLPH--NTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMADA 116 (341)
Q Consensus 39 ~~~~~~~~TPl~~~~l~~L~~--g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~~A 116 (341)
|++....+|||+. .+.|++ |++||+| ||||+. +||||.|++++.+...
T Consensus 18 ri~~~~~~TPL~~--s~~Ls~~~g~~v~lK--------------------------~E~lQ~--~gSFK~RGA~n~i~~L 67 (347)
T COG1171 18 RLKGVVNPTPLQR--SPSLSERLGAEIYLK--------------------------RENLQP--VGSFKIRGAYNKLSSL 67 (347)
T ss_pred HHhCcccCCCccc--chhhHHhhCceEEEe--------------------------eccCcc--cccchhhhHHHHHHhc
Confidence 7777888999999 788888 8999999 999986 8999999999998876
Q ss_pred H-H-cCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCccccccCcH
Q 019410 117 V-A-QGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSV 194 (341)
Q Consensus 117 ~-~-~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~~~ 194 (341)
. + +....||++ |.|||++++|++|+++|++++||||.++| ..|+..+|.|||||++++. .|+++
T Consensus 68 s~e~~~~~gViaa--SaGNHaQGvA~aa~~lGi~a~IvMP~~tp--------~~Kv~a~r~~GaeVil~g~-~~dda--- 133 (347)
T COG1171 68 SEEEERAAGVIAA--SAGNHAQGVAYAAKRLGIKATIVMPETTP--------KIKVDATRGYGAEVILHGD-NFDDA--- 133 (347)
T ss_pred ChhhhhcCceEEe--cCCcHHHHHHHHHHHhCCCEEEEecCCCc--------HHHHHHHHhcCCEEEEECC-CHHHH---
Confidence 4 2 345678874 56999999999999999999999999987 3479999999999999987 47653
Q ss_pred HHHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcCCCCC
Q 019410 195 TLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKA 274 (341)
Q Consensus 195 ~~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~~~~~ 274 (341)
.+.+++++++.+..|+.|++ +|+.+.|+.|++.||++|+.+ .+|+||||+|+||+++|++.++|...|++
T Consensus 134 ---~~~a~~~a~~~G~~~i~pfD--~p~viAGQGTi~lEileq~~~-----~~d~v~vpvGGGGLisGia~~~k~~~p~~ 203 (347)
T COG1171 134 ---YAAAEELAEEEGLTFVPPFD--DPDVIAGQGTIALEILEQLPD-----LPDAVFVPVGGGGLISGIATALKALSPEI 203 (347)
T ss_pred ---HHHHHHHHHHcCCEEeCCCC--CcceeecccHHHHHHHHhccc-----cCCEEEEecCccHHHHHHHHHHHHhCCCC
Confidence 23455666553334444543 677788999999999999973 37999999999999999999999999999
Q ss_pred eEEEEeeCCCCccc-----------hHhHHHHhhcccCCC-----------CCCceEEeccchHHHHHHHHHHH
Q 019410 275 KVHAFSVCDDPDYF-----------YDYTQGLLDGLNAGV-----------DSRDIVNIQNVSVYMTFKNILMN 326 (341)
Q Consensus 275 rVigVe~~g~~~~~-----------~~~i~~l~~~~~~~~-----------~~~~iv~v~d~~~~~~~~~~~~~ 326 (341)
||||||+++.+... ...+..+++|.+... ..|++|.|+|++.|.+++.+..+
T Consensus 204 ~vIGVEp~~a~~~~~Sl~~G~~~~~~~~~~tiaDG~av~~~g~~tf~i~~~~vd~~v~V~e~ei~~am~~l~~~ 277 (347)
T COG1171 204 KVIGVEPEGAPSMYASLKAGKIVVVLPDVGTIADGLAVKRPGDLTFEILRELVDDIVLVDEDEICAAMRDLFER 277 (347)
T ss_pred eEEEEeeCCChHHHHHHHcCCceeecCCCCccccccccCCCCHHHHHHHHHcCCcEEEECHHHHHHHHHHHHhc
Confidence 99999999886532 223455777777522 47899999999999999887543
No 11
>PRK10717 cysteine synthase A; Provisional
Probab=100.00 E-value=8.3e-38 Score=302.86 Aligned_cols=242 Identities=22% Similarity=0.199 Sum_probs=187.5
Q ss_pred ccccCcCCCcccccCCCCCCC--CceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHHHH
Q 019410 39 VFSLGHFPTPIHKWNLPNLPH--NTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMADA 116 (341)
Q Consensus 39 ~~~~~~~~TPl~~~~l~~L~~--g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~~A 116 (341)
.+.+..++|||++ +++|++ |++||+| +|..|| +||||+|++.+++.++
T Consensus 6 ~~~~~~g~TPL~~--~~~l~~~~g~~i~~K-------~E~~np---------------------tGS~K~Rga~~~v~~a 55 (330)
T PRK10717 6 DVSDTIGNTPLIR--LNRASEATGCEILGK-------AEFLNP---------------------GGSVKDRAALNIIWDA 55 (330)
T ss_pred hHHHHhCCCceEE--ccccCCCCCCeEEEE-------eeccCC---------------------CCCchHHHHHHHHHHH
Confidence 3456779999999 788876 7899999 444444 4778999999999999
Q ss_pred HHcCC----CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCccccccC
Q 019410 117 VAQGA----DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIG 192 (341)
Q Consensus 117 ~~~g~----~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~ 192 (341)
++.|. ++||+ +|+||||+|+|++|+++|++|+||||..++ ..|+.+++.+||+|+.++...|++.+
T Consensus 56 ~~~g~~~~g~~vv~--aSsGN~g~alA~~a~~~G~~~~vv~p~~~~--------~~k~~~~~~~GA~V~~~~~~~~~~~~ 125 (330)
T PRK10717 56 EKRGLLKPGGTIVE--GTAGNTGIGLALVAAARGYKTVIVMPETQS--------QEKKDLLRALGAELVLVPAAPYANPN 125 (330)
T ss_pred HHcCCCCCCCEEEE--eCCcHHHHHHHHHHHHcCCcEEEEeCCCCC--------HHHHHHHHHcCCEEEEeCCccccccc
Confidence 99887 67887 567999999999999999999999998875 35899999999999999863243211
Q ss_pred -cHHHHHHHHHHHHHhCCCcEEeCCCCCchhHH-HHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcC
Q 019410 193 -SVTLTNILKEKLLKEGRRPYVIPVGGSNSIGT-WGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLG 270 (341)
Q Consensus 193 -~~~~~~~~a~~l~~~g~~~~~ip~g~~n~~~~-~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~ 270 (341)
..+.++++++++.++++..++++.+++||.+. .||.+++.||.+|++ .++|+||+|+||||+++|++.++++.
T Consensus 126 ~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~Ei~~ql~-----~~~d~iv~~vG~GG~~~Gi~~~~k~~ 200 (330)
T PRK10717 126 NYVKGAGRLAEELVASEPNGAIWANQFDNPANREAHYETTGPEIWEQTD-----GKVDGFVCAVGTGGTLAGVSRYLKET 200 (330)
T ss_pred chHHHHHHHHHHHHhhCCCCeEecCCCCChhhHHHHHHhHHHHHHHhcC-----CCCCEEEEecCchHHHHHHHHHHHHh
Confidence 11222444555544433356677778888864 679999999999986 36899999999999999999999999
Q ss_pred CCCCeEEEEeeCCCCccch-------HhHHHHhhcccCC--------CCCCceEEeccchHHHHHHHHHH
Q 019410 271 TLKAKVHAFSVCDDPDYFY-------DYTQGLLDGLNAG--------VDSRDIVNIQNVSVYMTFKNILM 325 (341)
Q Consensus 271 ~~~~rVigVe~~g~~~~~~-------~~i~~l~~~~~~~--------~~~~~iv~v~d~~~~~~~~~~~~ 325 (341)
.+++|||+|++.+++.+.. .....+.++++.+ ...++++.|+|.+++..++.++.
T Consensus 201 ~~~~~vi~Vep~~~~~~~~~~~g~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~ 270 (330)
T PRK10717 201 NPKVKIVLADPTGSALYSYYKTGELKAEGSSITEGIGQGRITANLEGAPIDDAIRIPDEEALSTAYRLLE 270 (330)
T ss_pred CCCCEEEEEcCCCCccccccccCCcCCCCCcccCcCCCCcCCcccChhhCCEEEEECHHHHHHHHHHHHH
Confidence 9999999999998743321 1112344444431 13678999999999999888763
No 12
>PLN03013 cysteine synthase
Probab=100.00 E-value=2.3e-37 Score=306.88 Aligned_cols=236 Identities=18% Similarity=0.096 Sum_probs=187.2
Q ss_pred ccccCcCCCcccccCCCCCCC--CceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHHHH
Q 019410 39 VFSLGHFPTPIHKWNLPNLPH--NTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMADA 116 (341)
Q Consensus 39 ~~~~~~~~TPl~~~~l~~L~~--g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~~A 116 (341)
++...+++|||++ ++.+++ +++||+| +|++||+ ||||+|.+.+++..+
T Consensus 116 ~i~~~iG~TPLv~--l~~l~~~~g~~Iy~K-------lE~lNPt---------------------GSfKdR~A~~~l~~a 165 (429)
T PLN03013 116 NVSQLIGKTPMVY--LNSIAKGCVANIAAK-------LEIMEPC---------------------CSVKDRIGYSMVTDA 165 (429)
T ss_pred HHHhcCCCCCeEE--CcccccccCCeEEEE-------eccCCCc---------------------cccHHHHHHHHHHHH
Confidence 5667889999999 777766 6799999 9999885 455999999999999
Q ss_pred HHcCC-----CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCcccccc
Q 019410 117 VAQGA-----DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKI 191 (341)
Q Consensus 117 ~~~g~-----~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~ 191 (341)
+++|. ++||+ +|+||||+|+|++|+.+|++++||||+.++ ..+++++++|||+|+.++.. +.
T Consensus 166 ~~~G~l~pG~~~VVe--aSSGN~G~ALA~~a~~~G~~~~VvvP~~~s--------~~K~~~ira~GAeVi~v~~~-~~-- 232 (429)
T PLN03013 166 EQKGFISPGKSVLVE--PTSGNTGIGLAFIAASRGYRLILTMPASMS--------MERRVLLKAFGAELVLTDPA-KG-- 232 (429)
T ss_pred HHcCCcCCCCcEEEE--ECCcHHHHHHHHHHHHcCCCEEEEECCCCc--------HHHHHHHHHcCCEEEEECCC-CC--
Confidence 98875 45776 467999999999999999999999999885 45799999999999999863 11
Q ss_pred CcHHHHHHHHHHHHHhCCCcEEeCCCCCchhHHH-HHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcC
Q 019410 192 GSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTW-GYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLG 270 (341)
Q Consensus 192 ~~~~~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~-G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~ 270 (341)
..+.+ +.++++.++.++ ++++.++.|+.+.. ||.+++.||++|+. .++|+||+++|||||++|+++++|+.
T Consensus 233 -~~~a~-~~A~ela~~~~g-~~~~~qy~Np~n~~ah~~ttg~EI~eq~~-----~~~D~vV~~vGtGGtisGiar~lKe~ 304 (429)
T PLN03013 233 -MTGAV-QKAEEILKNTPD-AYMLQQFDNPANPKIHYETTGPEIWDDTK-----GKVDIFVAGIGTGGTITGVGRFIKEK 304 (429)
T ss_pred -hHHHH-HHHHHHHhhcCC-eEeCCCCCCHHHHHHHHHHHHHHHHHhcC-----CCCCEEEEeCCccHHHHHHHHHHHhh
Confidence 11222 234555544223 44556778998874 99999999999985 36999999999999999999999999
Q ss_pred CCCCeEEEEeeCCCCcc-----chHhHHHHhhcccCC----CCCCceEEeccchHHHHHHHHHH
Q 019410 271 TLKAKVHAFSVCDDPDY-----FYDYTQGLLDGLNAG----VDSRDIVNIQNVSVYMTFKNILM 325 (341)
Q Consensus 271 ~~~~rVigVe~~g~~~~-----~~~~i~~l~~~~~~~----~~~~~iv~v~d~~~~~~~~~~~~ 325 (341)
.|+++|||||+.++... ..+.++++..++.+. -..|+++.|+|.+++.+.+.++.
T Consensus 305 ~P~vkVigVep~gs~~l~~g~~~~~~i~Glg~~~ip~~~~~~~vD~vv~VsD~ea~~a~r~La~ 368 (429)
T PLN03013 305 NPKTQVIGVEPTESDILSGGKPGPHKIQGIGAGFIPKNLDQKIMDEVIAISSEEAIETAKQLAL 368 (429)
T ss_pred CCCCEEEEEEeCCCchhhCCCCCCcccCcccCCcCCHhHHHHhccEEEEECHHHHHHHHHHHHH
Confidence 99999999999987543 123344444443231 14689999999999999988874
No 13
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=100.00 E-value=4.6e-37 Score=293.79 Aligned_cols=232 Identities=21% Similarity=0.168 Sum_probs=183.3
Q ss_pred CcCCCcccccCCCCCCC--CceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHHHHHHcC
Q 019410 43 GHFPTPIHKWNLPNLPH--NTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMADAVAQG 120 (341)
Q Consensus 43 ~~~~TPl~~~~l~~L~~--g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~~A~~~g 120 (341)
.+++|||++ ++.|++ |.+||+| +|++++ +||||+|++.+++..+++.|
T Consensus 4 ~vg~TPL~~--~~~l~~~~g~~i~~K--------------------------~E~~~p--tGS~K~R~a~~~~~~a~~~g 53 (299)
T TIGR01136 4 LIGNTPLVR--LNRLAPGCDARVLAK--------------------------LEGRNP--SGSVKDRIALSMIEDAEKRG 53 (299)
T ss_pred ccCCCceEE--ccccCCCCCceEEEE--------------------------EcccCC--CCCccHHHHHHHHHHHHHcC
Confidence 358999999 787876 6899999 555543 57889999999999999988
Q ss_pred C----CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCccccccCcHHH
Q 019410 121 A----DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTL 196 (341)
Q Consensus 121 ~----~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~~~~~ 196 (341)
. ++||+ +|+||||+++|++|+++|++|+||||...+ ..|+..++.+||+|+.++.. +. ..+.
T Consensus 54 ~~~~g~~vv~--aSsGN~g~alA~~a~~~G~~~~i~vp~~~~--------~~k~~~~~~~GA~v~~~~~~-~~---~~~~ 119 (299)
T TIGR01136 54 LLKPGDTIIE--ATSGNTGIALAMVAAAKGYKLILTMPETMS--------LERRKLLRAYGAELILTPAE-EG---MKGA 119 (299)
T ss_pred CCCCCCEEEE--eCCChHHHHHHHHHHHcCCcEEEEECCCCC--------HHHHHHHHHcCCEEEEeCCC-CC---hHHH
Confidence 7 66875 577999999999999999999999998875 35799999999999999863 21 1122
Q ss_pred HHHHHHHHHHhCCCcEEeCCCCCchhH-HHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcCCCCCe
Q 019410 197 TNILKEKLLKEGRRPYVIPVGGSNSIG-TWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAK 275 (341)
Q Consensus 197 ~~~~a~~l~~~g~~~~~ip~g~~n~~~-~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~~~~~r 275 (341)
.+.++++.++. ..|+++.++.|+.+ ..||.+++.||++|++ .++|+||+|+|+||+++|++.+++..++.+|
T Consensus 120 -~~~a~~~~~~~-~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql~-----~~~d~iv~~vG~Gg~~~G~~~~~~~~~~~~~ 192 (299)
T TIGR01136 120 -IDKAEELAAET-NKYVMLDQFENPANPEAHYKTTGPEIWRDTD-----GRIDHFVAGVGTGGTITGVGRYLKEQNPNIK 192 (299)
T ss_pred -HHHHHHHHhhC-CCeEecCCCCCchhHHHHHHHHHHHHHHhcC-----CCCCEEEEcCchhHHHHHHHHHHHHhCCCCE
Confidence 23355565543 35667777777776 6789999999999996 2599999999999999999999999999999
Q ss_pred EEEEeeCCCCccc-----hHhHHHHhhcccCCC----CCCceEEeccchHHHHHHHHHH
Q 019410 276 VHAFSVCDDPDYF-----YDYTQGLLDGLNAGV----DSRDIVNIQNVSVYMTFKNILM 325 (341)
Q Consensus 276 VigVe~~g~~~~~-----~~~i~~l~~~~~~~~----~~~~iv~v~d~~~~~~~~~~~~ 325 (341)
||||++.++.... .+.+..+..+..+.. ..|+++.|+|.+++..++.++.
T Consensus 193 vi~Ve~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~ 251 (299)
T TIGR01136 193 IVAVEPAESPVLSGGEPGPHKIQGIGAGFIPKILDLSLIDEVITVSDEDAIETARRLAR 251 (299)
T ss_pred EEEEecCCCccccCCCCCCccCCCCCCCCCCccCChhhCCEEEEECHHHHHHHHHHHHH
Confidence 9999999876543 223344433333211 2578999999999999988875
No 14
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=100.00 E-value=8.1e-37 Score=290.83 Aligned_cols=232 Identities=18% Similarity=0.157 Sum_probs=183.5
Q ss_pred CCCcccccCCCCCCC--CceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHHHHHHcCC-
Q 019410 45 FPTPIHKWNLPNLPH--NTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMADAVAQGA- 121 (341)
Q Consensus 45 ~~TPl~~~~l~~L~~--g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~~A~~~g~- 121 (341)
++|||++ +++|++ |++||+| +|++++ +||||+|++.+++..+.++|+
T Consensus 1 g~TPl~~--~~~l~~~~g~~i~~K--------------------------~E~~~p--tgS~K~R~a~~~l~~a~~~g~~ 50 (291)
T cd01561 1 GNTPLVR--LNRLSPGTGAEIYAK--------------------------LEFFNP--GGSVKDRIALYMIEDAEKRGLL 50 (291)
T ss_pred CCCCEEE--ccccCCCCCCeEEEE--------------------------ecccCC--CCcchHHHHHHHHHHHHHcCCC
Confidence 5899999 788876 7899999 666643 588999999999999999987
Q ss_pred ---CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCccccccCcHHHHH
Q 019410 122 ---DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTN 198 (341)
Q Consensus 122 ---~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~~~~~~~ 198 (341)
++||+ +|+||||+|+|++|+++|++|+||||..++ ..|++.++.+||+|+.++.. +.. ...+. .
T Consensus 51 ~~~~~vv~--~SsGN~g~alA~~a~~~G~~~~i~vp~~~~--------~~k~~~~~~~Ga~v~~~~~~-~~~-~~~~~-~ 117 (291)
T cd01561 51 KPGTTIIE--PTSGNTGIGLAMVAAAKGYRFIIVMPETMS--------EEKRKLLRALGAEVILTPEA-EAD-GMKGA-I 117 (291)
T ss_pred CCCCEEEE--eCCChHHHHHHHHHHHcCCeEEEEECCCCC--------HHHHHHHHHcCCEEEEeCCC-CcC-CHHHH-H
Confidence 67776 578999999999999999999999998764 45899999999999999864 310 11122 2
Q ss_pred HHHHHHHHhCCCcEEeCCCCCchhHHHHHH-HHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcCCCCCeEE
Q 019410 199 ILKEKLLKEGRRPYVIPVGGSNSIGTWGYI-EAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVH 277 (341)
Q Consensus 199 ~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~-t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~~~~~rVi 277 (341)
+.++++.++.+ .++++.++.||.++.||. +++.||.+|++ ..||+||+|+|+|||++|++.+++..+++++||
T Consensus 118 ~~a~~~~~~~~-~~~~~~~~~~p~~~~g~~~t~~~Ei~~ql~-----~~~d~vv~~~G~Gg~~~Gi~~~~~~~~~~~~vi 191 (291)
T cd01561 118 AKARELAAETP-NAFWLNQFENPANPEAHYETTAPEIWEQLD-----GKVDAFVAGVGTGGTITGVARYLKEKNPNVRIV 191 (291)
T ss_pred HHHHHHHhhCC-CcEEecCCCCchHHHHHHHHHHHHHHHHcC-----CCCCEEEEeCChHHHHHHHHHHHHHhCCCCEEE
Confidence 34555655442 355556678999999987 99999999996 269999999999999999999999999999999
Q ss_pred EEeeCCCCcc-chHhHHHHhhcccCC--------CCCCceEEeccchHHHHHHHHHH
Q 019410 278 AFSVCDDPDY-FYDYTQGLLDGLNAG--------VDSRDIVNIQNVSVYMTFKNILM 325 (341)
Q Consensus 278 gVe~~g~~~~-~~~~i~~l~~~~~~~--------~~~~~iv~v~d~~~~~~~~~~~~ 325 (341)
||++.+++.. .......+.++++.+ ...++++.|.|.+++..++.++.
T Consensus 192 ~Ve~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~ 248 (291)
T cd01561 192 GVDPVGSVLFSGGPPGPHKIEGIGAGFIPENLDRSLIDEVVRVSDEEAFAMARRLAR 248 (291)
T ss_pred EEecCCCcccCCCCCCCCcCCCCCCCCCCCccCchhCceeEEECHHHHHHHHHHHHH
Confidence 9999987654 112222334444432 13679999999999999888775
No 15
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=100.00 E-value=5.7e-37 Score=292.24 Aligned_cols=228 Identities=20% Similarity=0.187 Sum_probs=177.8
Q ss_pred CcCCCcccccCCCCCCC--CceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHHHHHHcC
Q 019410 43 GHFPTPIHKWNLPNLPH--NTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMADAVAQG 120 (341)
Q Consensus 43 ~~~~TPl~~~~l~~L~~--g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~~A~~~g 120 (341)
.+++|||++ +++|++ |++||+| +|++|| +||||+|++.+++.+|+++|
T Consensus 5 ~ig~TPl~~--~~~l~~~~g~~i~~K-------~E~~np---------------------tGS~K~R~a~~~v~~a~~~g 54 (290)
T TIGR01138 5 TVGNTPLVR--LQRMGPENGSEVWLK-------LEGNNP---------------------AGSVKDRPALSMIVEAEKRG 54 (290)
T ss_pred hCCCCceEE--ccccccCCCCeEEEE-------EccCCC---------------------CccHHHHHHHHHHHHHHHcC
Confidence 468999999 777765 7899999 454444 57789999999999999998
Q ss_pred C----CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCcc-ccccCcHH
Q 019410 121 A----DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEE-YSKIGSVT 195 (341)
Q Consensus 121 ~----~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~-~~~~~~~~ 195 (341)
. ++||+ +|+||||+++|++|+++|++|+||||...+ ..|+..++.|||+|+.++... ++ .
T Consensus 55 ~~~~g~~vv~--aSsGN~g~alA~~a~~~G~~~~i~~p~~~~--------~~k~~~~~~~GA~v~~v~~~~~~~-----~ 119 (290)
T TIGR01138 55 EIKPGDVLIE--ATSGNTGIALAMIAALKGYRMKLLMPDNMS--------QERKAAMRAYGAELILVTKEEGME-----G 119 (290)
T ss_pred CCCCCCEEEE--ECCChHHHHHHHHHHHcCCeEEEEECCCCC--------HHHHHHHHHcCCEEEEeCCCCChH-----H
Confidence 7 77887 467999999999999999999999999875 347999999999999998532 22 2
Q ss_pred HHHHHHHHHHHhCCCcEEeCCCCCchhHHH-HHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcCCCCC
Q 019410 196 LTNILKEKLLKEGRRPYVIPVGGSNSIGTW-GYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKA 274 (341)
Q Consensus 196 ~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~-G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~~~~~ 274 (341)
. .++++++.++.+..| + .++.|+.+.. ||.+++.||++|+. .++|+||+|+|||||++|++.++|..++++
T Consensus 120 ~-~~~a~~l~~~~~~~~-~-~~~~~~~~~~~~~~t~~~Ei~~q~~-----~~~d~iv~~vG~Gg~~~Gv~~~lk~~~~~~ 191 (290)
T TIGR01138 120 A-RDLALELANRGEGKL-L-DQFNNPDNPYAHYTSTGPEIWQQTG-----GRITHFVSSMGTTGTIMGVSRFLKEQNPPV 191 (290)
T ss_pred H-HHHHHHHHHhCCCCC-C-CccCCcccHHHHhHhHHHHHHHHcC-----CCCCEEEECCCchHHHHHHHHHHHHhCCCC
Confidence 2 344556665543333 3 3445555554 57899999999985 368999999999999999999999999999
Q ss_pred eEEEEeeCCCCccchHhHHHHhhcccCCC----CCCceEEeccchHHHHHHHHHH
Q 019410 275 KVHAFSVCDDPDYFYDYTQGLLDGLNAGV----DSRDIVNIQNVSVYMTFKNILM 325 (341)
Q Consensus 275 rVigVe~~g~~~~~~~~i~~l~~~~~~~~----~~~~iv~v~d~~~~~~~~~~~~ 325 (341)
|||+||+.++... ..+..+.+++.+.+ ..|+++.|+|.+++..++.++.
T Consensus 192 kvi~Vep~~~~~~--~g~~~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~ 244 (290)
T TIGR01138 192 QIVGLQPEEGSSI--PGIRRWPTEYLPGIFDASLVDRVLDIHQRDAENTMRELAV 244 (290)
T ss_pred EEEEEeCCCCCCc--cCCCCCCCCcCCcccChhhCcEEEEECHHHHHHHHHHHHH
Confidence 9999999886542 11222333333322 3679999999999999888775
No 16
>PRK11761 cysM cysteine synthase B; Provisional
Probab=100.00 E-value=6.7e-37 Score=292.58 Aligned_cols=233 Identities=18% Similarity=0.133 Sum_probs=179.7
Q ss_pred ccccCcCCCcccccCCCCCCC--CceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHHHH
Q 019410 39 VFSLGHFPTPIHKWNLPNLPH--NTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMADA 116 (341)
Q Consensus 39 ~~~~~~~~TPl~~~~l~~L~~--g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~~A 116 (341)
++...+++|||++ +++|++ |++||+| +|++|| +||||+|++.+++.+|
T Consensus 5 ~i~~~~g~TPl~~--~~~l~~~~g~~i~~K-------~E~~np---------------------tGS~K~R~a~~~~~~a 54 (296)
T PRK11761 5 TLEDTIGNTPLVK--LQRLPPDRGNTILAK-------LEGNNP---------------------AGSVKDRPALSMIVQA 54 (296)
T ss_pred cHHHhcCCCceEe--ccccccCCCCEEEEE-------EcccCC---------------------CCCchhHHHHHHHHHH
Confidence 4555679999999 677765 7899999 555555 5778999999999999
Q ss_pred HHcCC----CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCc-ccccc
Q 019410 117 VAQGA----DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKE-EYSKI 191 (341)
Q Consensus 117 ~~~g~----~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~-~~~~~ 191 (341)
+++|. ++||+ +|+||||+|+|++|+.+|++|+||||+.++ ..|++.++.|||+|+.++.. .++
T Consensus 55 ~~~g~~~~g~~vv~--aSsGN~g~alA~~a~~~G~~~~i~~p~~~~--------~~k~~~~~~~GA~v~~~~~~~~~~-- 122 (296)
T PRK11761 55 EKRGEIKPGDTLIE--ATSGNTGIALAMIAAIKGYRMKLIMPENMS--------QERRAAMRAYGAELILVPKEQGME-- 122 (296)
T ss_pred HHcCCCCCCCEEEE--eCCChHHHHHHHHHHHcCCCEEEEECCCCC--------HHHHHHHHHcCCEEEEeCCCCChH--
Confidence 99886 77887 477999999999999999999999999875 35899999999999999862 232
Q ss_pred CcHHHHHHHHHHHHHhCCCcEEeCCCCCchhHHH-HHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcC
Q 019410 192 GSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTW-GYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLG 270 (341)
Q Consensus 192 ~~~~~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~-G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~ 270 (341)
+ +.+.+++++++. ..+++ .++.|+.+.. ||.+++.||++|++ ..+|+||+|+|||||++|++.++|+.
T Consensus 123 ---~-~~~~a~~l~~~~-~~~~~-~~~~n~~~~~~~~~t~~~Ei~eq~~-----~~~d~iv~~vG~Gg~~~Gi~~~lk~~ 191 (296)
T PRK11761 123 ---G-ARDLALQMQAEG-EGKVL-DQFANPDNPLAHYETTGPEIWRQTE-----GRITHFVSSMGTTGTIMGVSRYLKEQ 191 (296)
T ss_pred ---H-HHHHHHHHHhcc-CCEec-CCCCChhhHHHHhhchHHHHHHhcC-----CCCCEEEecCCcHHHHHHHHHHHHHh
Confidence 1 234456666543 33443 3455666543 67899999999986 25899999999999999999999999
Q ss_pred CCCCeEEEEeeCCCCccchHhHHHHhhcccC----CCCCCceEEeccchHHHHHHHHHHH
Q 019410 271 TLKAKVHAFSVCDDPDYFYDYTQGLLDGLNA----GVDSRDIVNIQNVSVYMTFKNILMN 326 (341)
Q Consensus 271 ~~~~rVigVe~~g~~~~~~~~i~~l~~~~~~----~~~~~~iv~v~d~~~~~~~~~~~~~ 326 (341)
++++||||||+.++..... +......... ....|+++.|+|.+++.+.+.++.+
T Consensus 192 ~~~~kvigVep~~~~~i~g--~~~~~~~~~~~~~~~~~vd~~v~V~d~e~~~a~~~l~~~ 249 (296)
T PRK11761 192 NPAVQIVGLQPEEGSSIPG--IRRWPEEYLPKIFDASRVDRVLDVSQQEAENTMRRLARE 249 (296)
T ss_pred CCCCEEEEEecCCCCcCcC--CCCCCCCcCCcccChhhCCEEEEECHHHHHHHHHHHHHH
Confidence 9999999999987543210 1111111111 1246799999999999999888764
No 17
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=100.00 E-value=1.3e-36 Score=290.52 Aligned_cols=233 Identities=18% Similarity=0.139 Sum_probs=180.9
Q ss_pred CcCCCcccccCCCCCCC-CceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHHHHHHcCC
Q 019410 43 GHFPTPIHKWNLPNLPH-NTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMADAVAQGA 121 (341)
Q Consensus 43 ~~~~TPl~~~~l~~L~~-g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~~A~~~g~ 121 (341)
.+++|||++ ++++.. |.+||+| +|++++ +||||+|++.+++..|+++|.
T Consensus 4 ~~g~TPl~~--~~~~~~~g~~i~~K--------------------------~E~~np--tGS~K~R~a~~~l~~a~~~g~ 53 (298)
T TIGR01139 4 LIGNTPLVR--LNRIEGCNANVFVK--------------------------LEGRNP--SGSVKDRIALNMIWDAEKRGL 53 (298)
T ss_pred ccCCCceEE--ccccCCCCceEEEE--------------------------EcccCC--CCcchHHHHHHHHHHHHHcCC
Confidence 468999999 565434 7899999 555542 578899999999999999987
Q ss_pred ----CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCccccccCcHHHH
Q 019410 122 ----DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLT 197 (341)
Q Consensus 122 ----~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~~~~~~ 197 (341)
++||+ +|+||||+++|++|+++|++|+||||+.++ ..++++++.+||+|+.++.. |+. .+..
T Consensus 54 ~~~g~~vv~--aSsGN~g~alA~~a~~~Gl~~~i~vp~~~~--------~~k~~~~~~~GA~v~~~~~~-~~~---~~~~ 119 (298)
T TIGR01139 54 LKPGKTIVE--PTSGNTGIALAMVAAARGYKLILTMPETMS--------IERRKLLKAYGAELVLTPGA-EGM---KGAI 119 (298)
T ss_pred CCCCCEEEE--eCCChhHHHHHHHHHHcCCeEEEEeCCccC--------HHHHHHHHHcCCEEEEECCC-CCH---HHHH
Confidence 66775 577999999999999999999999999875 34799999999999999863 421 1222
Q ss_pred HHHHHHHHHhCCCcEEeCCCCCchhH-HHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcCCCCCeE
Q 019410 198 NILKEKLLKEGRRPYVIPVGGSNSIG-TWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKV 276 (341)
Q Consensus 198 ~~~a~~l~~~g~~~~~ip~g~~n~~~-~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~~~~~rV 276 (341)
+ .++++.++.+..|+++.+++|+.+ ..||.+++.||.+|++ ..||+||+|+|+|||++|++.+++..++++||
T Consensus 120 ~-~a~~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q~~-----~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~v 193 (298)
T TIGR01139 120 A-KAEEIAASTPNSYFMLQQFENPANPEIHRKTTGPEIWRDTD-----GKLDAFVAGVGTGGTITGVGEVLKEQKPNIKI 193 (298)
T ss_pred H-HHHHHHHhCCCcEEcccccCCcccHHHHHHHHHHHHHHHhC-----CCCCEEEEecchhHhHHHHHHHHHhcCCCCEE
Confidence 2 355566554345767777888885 6699999999999986 25999999999999999999999999999999
Q ss_pred EEEeeCCCCccc-----hHhHHHHhhcccCCC----CCCceEEeccchHHHHHHHHHH
Q 019410 277 HAFSVCDDPDYF-----YDYTQGLLDGLNAGV----DSRDIVNIQNVSVYMTFKNILM 325 (341)
Q Consensus 277 igVe~~g~~~~~-----~~~i~~l~~~~~~~~----~~~~iv~v~d~~~~~~~~~~~~ 325 (341)
|+||+.+++... .+.+.++..+..+.. ..|+++.|.|.+++..++.++.
T Consensus 194 i~Ve~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~ 251 (298)
T TIGR01139 194 VAVEPAESPVLSGGKPGPHKIQGIGAGFIPKNLNRSVIDEVITVSDEEAIETARRLAA 251 (298)
T ss_pred EEEecCCCcccCCCCCCCCCCCCCCCCCCCCccChhhCCEEEEECHHHHHHHHHHHHH
Confidence 999999874322 112222222111111 3578999999999999888876
No 18
>PRK07476 eutB threonine dehydratase; Provisional
Probab=100.00 E-value=1.7e-37 Score=299.93 Aligned_cols=232 Identities=19% Similarity=0.183 Sum_probs=180.3
Q ss_pred ccccCcCCCcccccCCCCCCC--CceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHHHH
Q 019410 39 VFSLGHFPTPIHKWNLPNLPH--NTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMADA 116 (341)
Q Consensus 39 ~~~~~~~~TPl~~~~l~~L~~--g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~~A 116 (341)
++...+++|||++ +++|++ |++||+| +|++++ +||||+|++.+++..+
T Consensus 12 ~i~~~i~~TPl~~--~~~l~~~~g~~l~~K--------------------------~E~~np--tGS~K~R~a~~~i~~a 61 (322)
T PRK07476 12 RIAGRVRRTPLVA--SASLSARAGVPVWLK--------------------------LETLQP--TGSFKLRGATNALLSL 61 (322)
T ss_pred HHhCCCCCCCcee--chhhHHhhCCeEEEE--------------------------EccCCC--CCCchHHHHHHHHHhh
Confidence 5666789999999 788876 7899999 555542 6788999999999999
Q ss_pred HHcCCCe-EEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCccccccCcHH
Q 019410 117 VAQGADC-IITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVT 195 (341)
Q Consensus 117 ~~~g~~~-vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~~~~ 195 (341)
.+++.+. ||++ |+||||+++|++|+++|++|+||||..++ ..|+..++.|||+|+.++.. |++
T Consensus 62 ~~~~~~~gvv~a--SsGN~g~alA~~a~~~G~~~~i~vp~~~~--------~~k~~~~~~~GA~V~~~~~~-~~~----- 125 (322)
T PRK07476 62 SAQERARGVVTA--STGNHGRALAYAARALGIRATICMSRLVP--------ANKVDAIRALGAEVRIVGRS-QDD----- 125 (322)
T ss_pred hhhhhCCeEEEE--CCChHHHHHHHHHHHhCCCEEEEeCCCCC--------HHHHHHHHHcCCEEEEECCC-HHH-----
Confidence 9888755 8875 67999999999999999999999999875 34799999999999999863 432
Q ss_pred HHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcCCCCCe
Q 019410 196 LTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAK 275 (341)
Q Consensus 196 ~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~~~~~r 275 (341)
..+. ++++.++. +.++++ ++.|+....||.+++.||++|++ ++|+||+|+|||||++|++.++|..++++|
T Consensus 126 ~~~~-a~~~~~~~-g~~~~~-~~~n~~~~~g~~t~~~Ei~~Q~~------~~d~iv~~vG~GG~~~Gv~~~~k~~~~~~~ 196 (322)
T PRK07476 126 AQAE-VERLVREE-GLTMVP-PFDDPRIIAGQGTIGLEILEALP------DVATVLVPLSGGGLASGVAAAVKAIRPAIR 196 (322)
T ss_pred HHHH-HHHHHHhc-CCEEeC-CCCCcceeechhHHHHHHHHhCc------CCCEEEEEcChHHHHHHHHHHHHHhCCCCE
Confidence 2222 33444433 234443 34578888899999999999985 489999999999999999999999999999
Q ss_pred EEEEeeCCCCccc----------hHhHHHHhhcc----cC---------CCCCCceEEeccchHHHHHHHHHH
Q 019410 276 VHAFSVCDDPDYF----------YDYTQGLLDGL----NA---------GVDSRDIVNIQNVSVYMTFKNILM 325 (341)
Q Consensus 276 VigVe~~g~~~~~----------~~~i~~l~~~~----~~---------~~~~~~iv~v~d~~~~~~~~~~~~ 325 (341)
||||++++..... .+.+..+.++. +. .-..|+++.|+|.+++..++.++.
T Consensus 197 vigVe~~~~~~~~~s~~~g~~~~~~~~~t~a~~l~~~~~~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~ 269 (322)
T PRK07476 197 VIGVSMERGAAMHASLAAGRPVQVEEVPTLADSLGGGIGLDNRYTFAMCRALLDDVVLLDEAEIAAGIRHAYR 269 (322)
T ss_pred EEEEEECCchHHHHHHHcCCceeCCCCCCccccccccccCCcHHHHHHHHhcCCeEEEECHHHHHHHHHHHHH
Confidence 9999998754211 11222233322 21 113679999999999999988875
No 19
>PLN02550 threonine dehydratase
Probab=100.00 E-value=3.1e-37 Score=315.94 Aligned_cols=233 Identities=21% Similarity=0.222 Sum_probs=186.9
Q ss_pred ccccCcCCCcccccCCCCCCC--CceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHHHH
Q 019410 39 VFSLGHFPTPIHKWNLPNLPH--NTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMADA 116 (341)
Q Consensus 39 ~~~~~~~~TPl~~~~l~~L~~--g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~~A 116 (341)
++...+.+|||++ +++|++ |++||+| |||+++ +||||+|++.+++..+
T Consensus 102 ~v~~~i~~TPL~~--s~~LS~~~g~~IylK--------------------------~E~lqp--tGSFK~RGA~n~I~~L 151 (591)
T PLN02550 102 KVYDVAIESPLQL--AKKLSERLGVKVLLK--------------------------REDLQP--VFSFKLRGAYNMMAKL 151 (591)
T ss_pred hhhccccCChhhh--hHHhhHhhCCEEEEE--------------------------EcCCCC--CCcHHHHHHHHHHHHH
Confidence 5566789999999 788887 8999999 888864 7899999999998877
Q ss_pred H-HcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCccccccCcHH
Q 019410 117 V-AQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVT 195 (341)
Q Consensus 117 ~-~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~~~~ 195 (341)
. ++...+||++ |+||||+++|++|+++|++|+||||.++| ..|++.++.|||+|++++. .|+++
T Consensus 152 ~~e~~~~GVV~a--SaGNhAqgvA~aA~~lGika~IvmP~~tp--------~~Kv~~~r~~GAeVvl~g~-~~dea---- 216 (591)
T PLN02550 152 PKEQLDKGVICS--SAGNHAQGVALSAQRLGCDAVIAMPVTTP--------EIKWQSVERLGATVVLVGD-SYDEA---- 216 (591)
T ss_pred HHhcCCCCEEEE--CCCHHHHHHHHHHHHcCCCEEEEECCCCC--------HHHHHHHHHcCCEEEEeCC-CHHHH----
Confidence 4 4455678874 67999999999999999999999999886 3478999999999999986 36542
Q ss_pred HHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcCCCCCe
Q 019410 196 LTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAK 275 (341)
Q Consensus 196 ~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~~~~~r 275 (341)
.+.++++.++.+..|+.|+ .|+..+.|+.|+|.||++|+. ..+|+||+|+|+||+++|++.++|..+|++|
T Consensus 217 --~~~A~~la~e~g~~fi~pf--ddp~viaGqgTig~EI~eQl~-----~~~D~VvvpVGgGGLiaGia~~lK~l~p~vk 287 (591)
T PLN02550 217 --QAYAKQRALEEGRTFIPPF--DHPDVIAGQGTVGMEIVRQHQ-----GPLHAIFVPVGGGGLIAGIAAYVKRVRPEVK 287 (591)
T ss_pred --HHHHHHHHHhcCCEEECCC--CChHHHHHHHHHHHHHHHHcC-----CCCCEEEEEeChhHHHHHHHHHHHHhCCCCE
Confidence 2234445444324455444 478888899999999999986 2599999999999999999999999999999
Q ss_pred EEEEeeCCCCccc----------hHhHHHHhhcccCC-----------CCCCceEEeccchHHHHHHHHHH
Q 019410 276 VHAFSVCDDPDYF----------YDYTQGLLDGLNAG-----------VDSRDIVNIQNVSVYMTFKNILM 325 (341)
Q Consensus 276 VigVe~~g~~~~~----------~~~i~~l~~~~~~~-----------~~~~~iv~v~d~~~~~~~~~~~~ 325 (341)
||||++.+.+... ...+..++++++.. -..|++|.|+|.++|.+++.++.
T Consensus 288 VIGVEp~~a~~~~~s~~~G~~v~~~~~~tiAdGiav~~~G~~t~~i~~~~vD~vV~Vsd~eI~~Ai~~l~e 358 (591)
T PLN02550 288 IIGVEPSDANAMALSLHHGERVMLDQVGGFADGVAVKEVGEETFRLCRELVDGVVLVSRDAICASIKDMFE 358 (591)
T ss_pred EEEEEECCChHHHHHHhcCCccccCCCCCccceeecCCCCHHHHHHHHhhCCEEEEECHHHHHHHHHHHHH
Confidence 9999999876542 12333566666632 14689999999999999988765
No 20
>PRK08526 threonine dehydratase; Provisional
Probab=100.00 E-value=3.7e-37 Score=305.61 Aligned_cols=232 Identities=19% Similarity=0.249 Sum_probs=185.0
Q ss_pred ccccCcCCCcccccCCCCCCC--CceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHHHH
Q 019410 39 VFSLGHFPTPIHKWNLPNLPH--NTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMADA 116 (341)
Q Consensus 39 ~~~~~~~~TPl~~~~l~~L~~--g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~~A 116 (341)
++...+.+|||++ +++|++ |++||+| +||+++ +||||+|++.+.+..+
T Consensus 13 ~i~~~i~~TPl~~--~~~Ls~~~g~~iylK--------------------------~E~lqp--tGSfK~RgA~n~i~~l 62 (403)
T PRK08526 13 RISGFVNKTPFAY--APFLSKISGAEVYLK--------------------------KENLQI--TGAYKIRGAYNKIANL 62 (403)
T ss_pred HHhCcCCCCCccc--hHHHHHHhCCeEEEE--------------------------ecCCCC--CCCCHHHHHHHHHHhc
Confidence 5666789999999 788876 8899999 777663 6889999999998877
Q ss_pred HHc-CCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCccccccCcHH
Q 019410 117 VAQ-GADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVT 195 (341)
Q Consensus 117 ~~~-g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~~~~ 195 (341)
.+. +.++||+ +|+||||+++|++|+++|++|+||||..+| ..|+..++.|||+|++++. .|+++
T Consensus 63 ~~~~~~~gVV~--aSaGNhg~avA~aa~~~Gi~~~IvmP~~~p--------~~k~~~~r~~GA~Vv~~g~-~~~~a---- 127 (403)
T PRK08526 63 SEEQKQHGVIA--ASAGNHAQGVAISAKKFGIKAVIVMPEATP--------LLKVSGTKALGAEVILKGD-NYDEA---- 127 (403)
T ss_pred cHhhcCCEEEE--ECccHHHHHHHHHHHHcCCCEEEEEcCCCC--------HHHHHHHHhCCCEEEEECC-CHHHH----
Confidence 654 4577887 477999999999999999999999999886 3468899999999999986 46442
Q ss_pred HHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcCCCCCe
Q 019410 196 LTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAK 275 (341)
Q Consensus 196 ~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~~~~~r 275 (341)
++ .+.++.++.+..|+.| +.|+....||.|++.||++|++ .+|+||+|+|+||+++|++.++|..+|++|
T Consensus 128 -~~-~a~~~a~~~g~~~v~p--~~~~~~i~G~gtia~EI~eq~~------~~D~vvvpvGgGGl~aGia~~~k~~~p~~k 197 (403)
T PRK08526 128 -YA-FALEYAKENNLTFIHP--FEDEEVMAGQGTIALEMLDEIS------DLDMVVVPVGGGGLISGIASAAKQINPNIK 197 (403)
T ss_pred -HH-HHHHHHHhcCCEeeCC--CCCHHHHhhhHHHHHHHHHhcC------CCCEEEEecChHHHHHHHHHHHHHhCCCCE
Confidence 22 2444554432344444 3477788899999999999985 599999999999999999999999999999
Q ss_pred EEEEeeCCCCccch----------HhHHHHhhcccCC-----------CCCCceEEeccchHHHHHHHHHH
Q 019410 276 VHAFSVCDDPDYFY----------DYTQGLLDGLNAG-----------VDSRDIVNIQNVSVYMTFKNILM 325 (341)
Q Consensus 276 VigVe~~g~~~~~~----------~~i~~l~~~~~~~-----------~~~~~iv~v~d~~~~~~~~~~~~ 325 (341)
||||++++.+.... +.+..++++++.. -..|++|.|+|.+++..++.++.
T Consensus 198 vigVep~~~~~~~~s~~~g~~~~~~~~~tiadgiav~~~~~~~~~~~~~~vd~~v~V~d~ei~~A~~~l~~ 268 (403)
T PRK08526 198 IIGVGAKGAPAMYESFHAKKIINSKSVRTIADGIAVRDASPINLAIILECVDDFVQVDDEEIANAILFLLE 268 (403)
T ss_pred EEEEEECCCChHHHHHHcCCcccCCCCCceeccccCCCCCHHHHHHHHHhCCEEEEECHHHHHHHHHHHHH
Confidence 99999999875421 1344566666531 13689999999999999888764
No 21
>PRK12483 threonine dehydratase; Reviewed
Probab=100.00 E-value=5.2e-37 Score=312.04 Aligned_cols=236 Identities=23% Similarity=0.198 Sum_probs=185.6
Q ss_pred CCcccccCcCCCcccccCCCCCCC--CceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHH
Q 019410 36 PSHVFSLGHFPTPIHKWNLPNLPH--NTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLM 113 (341)
Q Consensus 36 ~~~~~~~~~~~TPl~~~~l~~L~~--g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll 113 (341)
-..++.....+|||++ +++|++ |++||+| +||+++ +||||+|++.+++
T Consensus 27 ~~~~i~~~v~~TPL~~--~~~Ls~~~g~~IylK--------------------------~E~lqp--tGSfK~RGA~n~i 76 (521)
T PRK12483 27 LAARVYDVARETPLQR--APNLSARLGNQVLLK--------------------------REDLQP--VFSFKIRGAYNKM 76 (521)
T ss_pred HHHHHhhhcCCCCeeE--chhhhHhhCCEEEEE--------------------------EcCCCC--CCchHHHHHHHHH
Confidence 3346777889999999 788877 8999999 777764 6889999999888
Q ss_pred HHHH-HcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCccccccC
Q 019410 114 ADAV-AQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIG 192 (341)
Q Consensus 114 ~~A~-~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~ 192 (341)
..+. +.+.++||++ |+||||+++|++|+++|++|+||||..+| ..|+..++.|||+|++++. .|+++
T Consensus 77 ~~l~~~~~~~GVV~a--SaGNha~gvA~aA~~lGi~~~IvmP~~tp--------~~Kv~~~r~~GAeVil~g~-~~d~a- 144 (521)
T PRK12483 77 ARLPAEQLARGVITA--SAGNHAQGVALAAARLGVKAVIVMPRTTP--------QLKVDGVRAHGGEVVLHGE-SFPDA- 144 (521)
T ss_pred HHhHHHHhcCcEEEE--CCCHHHHHHHHHHHHhCCCEEEEECCCCC--------HHHHHHHHHCCCEEEEECC-CHHHH-
Confidence 7654 3345668875 45999999999999999999999999886 3479999999999999985 46542
Q ss_pred cHHHHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcCCC
Q 019410 193 SVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTL 272 (341)
Q Consensus 193 ~~~~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~~~ 272 (341)
.+.+.++.++.+..|+.| +.|+..+.|+.|++.||++|++ ..+|+||+|+|+||+++|++.++|..+|
T Consensus 145 -----~~~A~~la~e~g~~~v~p--fdd~~viaGqgTig~EI~eQ~~-----~~~D~VvvpvGgGGliaGia~~~K~~~p 212 (521)
T PRK12483 145 -----LAHALKLAEEEGLTFVPP--FDDPDVIAGQGTVAMEILRQHP-----GPLDAIFVPVGGGGLIAGIAAYVKYVRP 212 (521)
T ss_pred -----HHHHHHHHHhcCCeeeCC--CCChHHHHHHHHHHHHHHHHhC-----CCCCEEEEecCccHHHHHHHHHHHHhCC
Confidence 223444544322334443 3478888999999999999986 2599999999999999999999999999
Q ss_pred CCeEEEEeeCCCCccc----------hHhHHHHhhcccCCC-----------CCCceEEeccchHHHHHHHHHH
Q 019410 273 KAKVHAFSVCDDPDYF----------YDYTQGLLDGLNAGV-----------DSRDIVNIQNVSVYMTFKNILM 325 (341)
Q Consensus 273 ~~rVigVe~~g~~~~~----------~~~i~~l~~~~~~~~-----------~~~~iv~v~d~~~~~~~~~~~~ 325 (341)
++|||||++++++... ...+..++++++... ..|++|.|+|+++|.+++.++-
T Consensus 213 ~vkVIGVep~~a~~~~~sl~~g~~~~~~~~~t~adGiav~~~g~~~~~~~~~~vd~vv~Vse~ei~~ai~~l~~ 286 (521)
T PRK12483 213 EIKVIGVEPDDSNCLQAALAAGERVVLGQVGLFADGVAVAQIGEHTFELCRHYVDEVVTVSTDELCAAIKDIYD 286 (521)
T ss_pred CCEEEEEEeCCCchhhHHHhcCCcccCCCCCceeceeccCCCCHHHHHHHHHhCCEEEEECHHHHHHHHHHHHH
Confidence 9999999999876532 122334555555321 3689999999999999988764
No 22
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=100.00 E-value=1e-36 Score=293.72 Aligned_cols=230 Identities=22% Similarity=0.212 Sum_probs=180.1
Q ss_pred CCcccccCCCCCCC--CceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHHHHHHcC---
Q 019410 46 PTPIHKWNLPNLPH--NTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMADAVAQG--- 120 (341)
Q Consensus 46 ~TPl~~~~l~~L~~--g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~~A~~~g--- 120 (341)
+|||++ +++|++ |++||+| +|++++ +||||+|++.+++.+++++|
T Consensus 1 ~TPl~~--~~~l~~~~g~~i~~K--------------------------~E~~np--tGS~K~R~a~~~l~~a~~~g~~~ 50 (316)
T cd06448 1 KTPLIE--STALSKTAGCNVFLK--------------------------LENLQP--SGSFKIRGIGHLCQKSAKQGLNE 50 (316)
T ss_pred CCCccc--cchhhHhhCCeEEEE--------------------------eccCCC--cCChHHHHHHHHHHHHHHhhccc
Confidence 599999 777776 7899999 555542 57889999999999999998
Q ss_pred CCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCccccccCcHHHHHHH
Q 019410 121 ADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNIL 200 (341)
Q Consensus 121 ~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~ 200 (341)
.++||++ |+||||+++|++|+.+|++|+||||...+ ..+++.++.|||+|+.++...++. ..+.
T Consensus 51 ~~~vv~a--SsGN~g~alA~~a~~~G~~~~iv~p~~~~--------~~k~~~l~~~GA~v~~~~~~~~~~------~~~~ 114 (316)
T cd06448 51 CVHVVCS--SGGNAGLAAAYAARKLGVPCTIVVPESTK--------PRVVEKLRDEGATVVVHGKVWWEA------DNYL 114 (316)
T ss_pred CCeEEEe--CCcHHHHHHHHHHHHcCCCEEEEECCCCC--------HHHHHHHHHcCCEEEEECCchHHH------HHHH
Confidence 7889975 45999999999999999999999999875 357999999999999998632321 1334
Q ss_pred HHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcCC-CCCeEEEE
Q 019410 201 KEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGT-LKAKVHAF 279 (341)
Q Consensus 201 a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~~-~~~rVigV 279 (341)
+++++++.++.|++. ++.||.+.+||.+++.||++|+.. . ..||+||+|+|||||++|++.+++..+ ++++||||
T Consensus 115 ~~~l~~~~~~~~~~~-~~~n~~~~~g~~t~~~Ei~~q~~~--~-~~~D~vv~~vG~Gg~~~Gv~~~~k~~~~~~~~ii~V 190 (316)
T cd06448 115 REELAENDPGPVYVH-PFDDPLIWEGHSSMVDEIAQQLQS--Q-EKVDAIVCSVGGGGLLNGIVQGLERNGWGDIPVVAV 190 (316)
T ss_pred HHHHHhccCCcEEeC-CCCCchhhccccHHHHHHHHHccc--c-CCCCEEEEEeCchHHHHHHHHHHHhcCCCCCEEEEE
Confidence 555665432445543 346899999999999999999962 0 259999999999999999999999986 99999999
Q ss_pred eeCCCCccch----------HhHHHHhhcccCCC-----------CCCceEEeccchHHHHHHHHHH
Q 019410 280 SVCDDPDYFY----------DYTQGLLDGLNAGV-----------DSRDIVNIQNVSVYMTFKNILM 325 (341)
Q Consensus 280 e~~g~~~~~~----------~~i~~l~~~~~~~~-----------~~~~iv~v~d~~~~~~~~~~~~ 325 (341)
++.++..... .....++++++... ..++++.|+|++++...+.++.
T Consensus 191 ep~g~~~~~~~~~~g~~~~~~~~~t~a~glg~~~~~~~~~~~~~~~~~~~v~Vsd~e~~~a~~~l~~ 257 (316)
T cd06448 191 ETEGAHSLNASLKAGKLVTLPKITSVATSLGAKTVSSQALEYAQEHNIKSEVVSDRDAVQACLRFAD 257 (316)
T ss_pred eeCCChHHHHHHHcCCcEecCCCCchhhccCCCCcCHHHHHHHHhcCCeEEEECHHHHHHHHHHHHH
Confidence 9998754321 11223444554321 2468999999999999888764
No 23
>PLN00011 cysteine synthase
Probab=100.00 E-value=3.5e-36 Score=290.91 Aligned_cols=233 Identities=18% Similarity=0.160 Sum_probs=179.2
Q ss_pred cCcCCCcccccCCCCCCC--CceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHHHHHHc
Q 019410 42 LGHFPTPIHKWNLPNLPH--NTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMADAVAQ 119 (341)
Q Consensus 42 ~~~~~TPl~~~~l~~L~~--g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~~A~~~ 119 (341)
..+++|||++ ++++++ |++||+| +|++++ +||||+|++.+++..|+++
T Consensus 13 ~~~g~TPl~~--l~~l~~~~g~~i~~K--------------------------~E~~nP--tGS~K~R~a~~~l~~a~~~ 62 (323)
T PLN00011 13 ELIGNTPMVY--LNNIVDGCVARIAAK--------------------------LEMMEP--CSSVKDRIAYSMIKDAEDK 62 (323)
T ss_pred HHhCCCceEE--ccccCCCCCceEEEE--------------------------ecccCC--ccccchHHHHHHHHHHHHc
Confidence 4569999999 788775 4799999 555543 6888999999999999998
Q ss_pred C-----CCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCccccccCcH
Q 019410 120 G-----ADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSV 194 (341)
Q Consensus 120 g-----~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~~~ 194 (341)
| +++||+ +|+||||+|+|++|+.+|++|+||||..++ ..|+++++++||+|+.++.. +.. .
T Consensus 63 g~~~~g~~~vv~--aSsGN~g~alA~~a~~~G~~~~ivvp~~~~--------~~k~~~i~~~GA~V~~~~~~-~~~---~ 128 (323)
T PLN00011 63 GLITPGKSTLIE--ATAGNTGIGLACIGAARGYKVILVMPSTMS--------LERRIILRALGAEVHLTDQS-IGL---K 128 (323)
T ss_pred CCCCCCCcEEEE--eCCChHHHHHHHHHHHcCCeEEEEeCCCCC--------HHHHHHHHHcCCEEEEECCC-cCh---H
Confidence 8 688987 577999999999999999999999998875 35899999999999999863 321 1
Q ss_pred HHHHHHHHHHHHhCCCcEEeCCCCCchhHH-HHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcCCCC
Q 019410 195 TLTNILKEKLLKEGRRPYVIPVGGSNSIGT-WGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLK 273 (341)
Q Consensus 195 ~~~~~~a~~l~~~g~~~~~ip~g~~n~~~~-~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~~~~ 273 (341)
...+. ++++.++.+. ++++.++.|+.+. .||.+++.||.+|+. .++|+||+|+|||||++|++.++|+.+++
T Consensus 129 ~~~~~-a~~l~~~~~~-~~~~~~~~n~~n~~~~~~t~~~EI~~q~~-----~~~D~iv~~vGtGGt~aGi~~~lk~~~~~ 201 (323)
T PLN00011 129 GMLEK-AEEILSKTPG-GYIPQQFENPANPEIHYRTTGPEIWRDSA-----GKVDILVAGVGTGGTATGVGKFLKEKNKD 201 (323)
T ss_pred HHHHH-HHHHHHhCCC-eEEeccccCCccHHHHHHHHHHHHHHhcC-----CCCCEEEEeCCchHHHHHHHHHHHhhCCC
Confidence 22233 4455554223 5566666555543 379999999999985 36999999999999999999999999999
Q ss_pred CeEEEEeeCCCCcc-chHhHHHHhhcccCCC--------CCCceEEeccchHHHHHHHHHH
Q 019410 274 AKVHAFSVCDDPDY-FYDYTQGLLDGLNAGV--------DSRDIVNIQNVSVYMTFKNILM 325 (341)
Q Consensus 274 ~rVigVe~~g~~~~-~~~~i~~l~~~~~~~~--------~~~~iv~v~d~~~~~~~~~~~~ 325 (341)
+|||||++.++... ..+....++++++.+. ..|+++.|+|.+.+..++.++.
T Consensus 202 ~kvigVe~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~ 262 (323)
T PLN00011 202 IKVCVVEPVESAVLSGGQPGPHLIQGIGSGIIPFNLDLTIVDEIIQVTGEEAIETAKLLAL 262 (323)
T ss_pred CEEEEEecCCCcccCCCCCCCCCCCCCCCCCCCcccChhhCCeEEEECHHHHHHHHHHHHH
Confidence 99999999987432 1111122333333211 2578999999999988887764
No 24
>PRK06352 threonine synthase; Validated
Probab=100.00 E-value=4.2e-37 Score=300.43 Aligned_cols=232 Identities=22% Similarity=0.249 Sum_probs=180.7
Q ss_pred ccccCcCCCcccccCCCCCCC--CceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHHHH
Q 019410 39 VFSLGHFPTPIHKWNLPNLPH--NTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMADA 116 (341)
Q Consensus 39 ~~~~~~~~TPl~~~~l~~L~~--g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~~A 116 (341)
++++++++|||++ +++|++ |++||+| +|++|| +||||+|++.+++.+|
T Consensus 21 ~~~l~~G~TPL~~--~~~l~~~~g~~l~~K-------~E~~np---------------------tGS~KdR~a~~~i~~a 70 (351)
T PRK06352 21 MISLAEGNTPLIP--LPNLSKELGVTLYGK-------YEGLNP---------------------TGSFKDRGMVMAVAKA 70 (351)
T ss_pred ccccCCCCCCeeE--cHhhHHHhCCeEEEE-------ecCCCC---------------------ccChHHHHHHHHHHHH
Confidence 6899999999999 787776 7899999 665555 5777999999999999
Q ss_pred HHcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCC-CCcCCCCCcchhHHHHHhCCCEEEEECCccccccCcHH
Q 019410 117 VAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSK-VLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVT 195 (341)
Q Consensus 117 ~~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~-~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~~~~ 195 (341)
.++|.++||++ |+||||+|+|++|+.+|++|+||||+.. + ..|+.++++|||+|+.++.. |++
T Consensus 71 ~~~g~~~vV~a--SsGN~G~AlA~~aa~~G~~~~ivvp~~~~~--------~~k~~~~~a~GA~V~~~~~~-~~~----- 134 (351)
T PRK06352 71 KEEGAEAVICA--STGNTSAAAAAYATRAGLKAYIVIPEGKVA--------LGKLAQAVMYGADIISIQGN-FDE----- 134 (351)
T ss_pred HHCCCCEEEEE--CCcHHHHHHHHHHHHcCCcEEEEEeCCCCc--------HHHHHHHHhcCCEEEEECCC-HHH-----
Confidence 99999999975 6799999999999999999999999863 3 35789999999999999863 543
Q ss_pred HHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcCCCC--
Q 019410 196 LTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLK-- 273 (341)
Q Consensus 196 ~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~~~~-- 273 (341)
. .+.++++.++. ..+++ +..|+.+.+||.+++.||++|++ ..||+||+|+|||||++|+++++|+.+++
T Consensus 135 ~-~~~a~~~~~~~-~~~~~--~~~n~~~~~G~~t~~~EI~~Q~~-----~~~D~vvv~vG~GG~~~Gi~~~lk~~~~~~~ 205 (351)
T PRK06352 135 A-LKSVRELAETE-AVTLV--NSVNPYRLEGQKTAAFEICEQLG-----SAPDVLAIPVGNAGNISAYWKGFKEWNEAKA 205 (351)
T ss_pred H-HHHHHHHHHhc-Ccccc--cCCCccceeeHHHHHHHHHHHcC-----CCCCEEEEECCchHHHHHHHHHHHHHHhcCC
Confidence 1 22344555432 23333 34689999999999999999985 36999999999999999999999987766
Q ss_pred ---CeEEEEeeCCCCccch-Hh---HHHHhhcccCC--C-------CCC----ceEEeccchHHHHHHHHHH
Q 019410 274 ---AKVHAFSVCDDPDYFY-DY---TQGLLDGLNAG--V-------DSR----DIVNIQNVSVYMTFKNILM 325 (341)
Q Consensus 274 ---~rVigVe~~g~~~~~~-~~---i~~l~~~~~~~--~-------~~~----~iv~v~d~~~~~~~~~~~~ 325 (341)
+|||+|++++...... +. .+.+.+++... . ..| +++.|+|.+++..++.++.
T Consensus 206 ~~~~~vi~Vep~g~~~~~~g~~~~~~~~ia~~l~~~~~~~~~~~~~~~d~~~g~~~~V~d~e~~~a~r~la~ 277 (351)
T PRK06352 206 SGLPRMHGFEAEGAAAIVQGKPIDNPETIATAIRIGNPASWGLAEAARDESGGYIHSVTDDEIVNAYKKIAA 277 (351)
T ss_pred CCCCEEEEEeeCCCCHHHhCCCcCCCCcceeEEEeCCCCcHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHh
Confidence 8999999988753211 11 12233332211 0 012 3899999999999888865
No 25
>PLN02565 cysteine synthase
Probab=100.00 E-value=4.8e-36 Score=289.81 Aligned_cols=236 Identities=19% Similarity=0.118 Sum_probs=181.5
Q ss_pred ccccCcCCCcccccCCCCCCC--CceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHHHH
Q 019410 39 VFSLGHFPTPIHKWNLPNLPH--NTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMADA 116 (341)
Q Consensus 39 ~~~~~~~~TPl~~~~l~~L~~--g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~~A 116 (341)
.+...+++|||++ ++.++. +++||+| +|++||+ ||||+|.+.+++..+
T Consensus 8 ~~~~~ig~TPLv~--l~~l~~~~~~~i~~K-------~E~~nPt---------------------GSfKdR~A~~~l~~~ 57 (322)
T PLN02565 8 DVTELIGKTPLVY--LNNVVDGCVARIAAK-------LEMMEPC---------------------SSVKDRIGYSMITDA 57 (322)
T ss_pred hHHHHhCCCceEE--ccccCCCCCceEEEE-------ecccCCc---------------------cchHHHHHHHHHHHH
Confidence 3556779999999 777754 4799999 8888885 556999999999999
Q ss_pred HHcCC-----CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCcccccc
Q 019410 117 VAQGA-----DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKI 191 (341)
Q Consensus 117 ~~~g~-----~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~ 191 (341)
.+.|. ++||++ |+||||+|+|++|+.+|++|+||||+.++ ..|+.+++.|||+|+.++.. +.
T Consensus 58 ~~~g~~~~g~~~vv~a--SsGN~g~alA~~a~~~G~~~~ivvp~~~~--------~~k~~~i~~~GA~V~~~~~~-~~-- 124 (322)
T PLN02565 58 EEKGLIKPGESVLIEP--TSGNTGIGLAFMAAAKGYKLIITMPASMS--------LERRIILLAFGAELVLTDPA-KG-- 124 (322)
T ss_pred HHcCCCCCCCcEEEEE--CCChHHHHHHHHHHHcCCeEEEEeCCCCc--------HHHHHHHHHcCCEEEEeCCC-CC--
Confidence 88764 458874 67999999999999999999999999875 35799999999999999863 21
Q ss_pred CcHHHHHHHHHHHHHhCCCcEEeCCCCCchhH-HHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcC
Q 019410 192 GSVTLTNILKEKLLKEGRRPYVIPVGGSNSIG-TWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLG 270 (341)
Q Consensus 192 ~~~~~~~~~a~~l~~~g~~~~~ip~g~~n~~~-~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~ 270 (341)
..+.. +.++++.++.+..|++ .++.|+.+ ..||.+++.||++|+. ..+|+||+|+||||+++|++.++|..
T Consensus 125 -~~~~~-~~a~~l~~~~~~~~~~-~q~~n~~n~~~~~~t~a~Ei~~q~~-----~~~d~vv~~vG~GG~l~Gi~~~lk~~ 196 (322)
T PLN02565 125 -MKGAV-QKAEEILAKTPNSYIL-QQFENPANPKIHYETTGPEIWKGTG-----GKVDAFVSGIGTGGTITGAGKYLKEQ 196 (322)
T ss_pred -cHHHH-HHHHHHHHhCCCcEee-cccCCHhHHHHHHHHHHHHHHHhcC-----CCCCEEEEcCCchHHHHHHHHHHHHh
Confidence 11222 3355555442244554 44567655 3589999999999985 35999999999999999999999999
Q ss_pred CCCCeEEEEeeCCCCcc-----chHhHHHHhhcccCCC----CCCceEEeccchHHHHHHHHHH
Q 019410 271 TLKAKVHAFSVCDDPDY-----FYDYTQGLLDGLNAGV----DSRDIVNIQNVSVYMTFKNILM 325 (341)
Q Consensus 271 ~~~~rVigVe~~g~~~~-----~~~~i~~l~~~~~~~~----~~~~iv~v~d~~~~~~~~~~~~ 325 (341)
++++|||||++.++... ..+.++++..++.+.. .+|+++.|+|.+++...+.++.
T Consensus 197 ~p~~kvi~Vep~~s~~~~~g~~~~~~~~glg~~~~~~~~~~~~vd~~v~V~d~ea~~a~~~l~~ 260 (322)
T PLN02565 197 NPDIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVDLLDEVVQVSSDEAIETAKLLAL 260 (322)
T ss_pred CCCCEEEEEecCCCccccCCCCCCccCCCCCCCCCCCcCCHhHCCEEEEECHHHHHHHHHHHHH
Confidence 99999999999987543 1222333332222222 3679999999999999888875
No 26
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=100.00 E-value=1e-36 Score=309.35 Aligned_cols=233 Identities=21% Similarity=0.212 Sum_probs=186.1
Q ss_pred ccccCcCCCcccccCCCCCCC--CceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHHHH
Q 019410 39 VFSLGHFPTPIHKWNLPNLPH--NTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMADA 116 (341)
Q Consensus 39 ~~~~~~~~TPl~~~~l~~L~~--g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~~A 116 (341)
++.....+|||++ +++|++ |++||+| |||+++ +||||+|++.+++..+
T Consensus 10 ~v~~~i~~TPL~~--~~~Ls~~~g~~i~lK--------------------------~E~lqp--tgSfK~RgA~n~i~~l 59 (499)
T TIGR01124 10 RVYEAAQETPLQK--AAKLSERLGNRILIK--------------------------REDLQP--VFSFKLRGAYNKMAQL 59 (499)
T ss_pred HhhCccCCCCeee--hHHHHHHhCCEEEEE--------------------------ecCCCC--CCCCHHHHHHHHHHHh
Confidence 5666779999999 788877 8899999 888863 7899999999998875
Q ss_pred -HHcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCccccccCcHH
Q 019410 117 -VAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVT 195 (341)
Q Consensus 117 -~~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~~~~ 195 (341)
.+++.++||++ |+||||+++|++|+++|++|+||||..+| ..|+..++.+||+|++++. .|+++
T Consensus 60 ~~~~~~~gVV~a--SaGNha~~vA~aa~~~Gi~~~IvmP~~tp--------~~Kv~~~r~~GA~Vvl~g~-~~d~a---- 124 (499)
T TIGR01124 60 SPEQKARGVIAA--SAGNHAQGVAFSAARLGLKALIVMPETTP--------DIKVDAVRGFGGEVVLHGA-NFDDA---- 124 (499)
T ss_pred hHHhcCCEEEEE--CCCHHHHHHHHHHHHcCCCEEEEECCCCC--------HHHHHHHHhCCCEEEEeCc-CHHHH----
Confidence 34456788885 57999999999999999999999999876 3479999999999999975 46432
Q ss_pred HHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcCCCCCe
Q 019410 196 LTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAK 275 (341)
Q Consensus 196 ~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~~~~~r 275 (341)
...+++++++.+..|+.| +.||..+.|+.|+|.||++|++ .++|+||+|+|||||++|++.++|..+|++|
T Consensus 125 --~~~a~~la~~~g~~~i~p--~~~~~~i~G~gtig~EI~~q~~-----~~~D~vvvpvGgGGliaGia~~lk~~~p~~k 195 (499)
T TIGR01124 125 --KAKAIELSQEKGLTFIHP--FDDPLVIAGQGTLALEILRQVA-----NPLDAVFVPVGGGGLAAGVAALIKQLMPEIK 195 (499)
T ss_pred --HHHHHHHHHhcCCEeeCC--CCChHHHHhhHHHHHHHHHhCC-----CCCCEEEEccCccHHHHHHHHHHHHhCCCCE
Confidence 233555665543334444 3478888999999999999986 3699999999999999999999999999999
Q ss_pred EEEEeeCCCCccc----------hHhHHHHhhcccCC-----------CCCCceEEeccchHHHHHHHHHH
Q 019410 276 VHAFSVCDDPDYF----------YDYTQGLLDGLNAG-----------VDSRDIVNIQNVSVYMTFKNILM 325 (341)
Q Consensus 276 VigVe~~g~~~~~----------~~~i~~l~~~~~~~-----------~~~~~iv~v~d~~~~~~~~~~~~ 325 (341)
||||++.+++... ...+..++++++.. -..|+++.|+|+++|..++.++.
T Consensus 196 VIgVep~~~~~~~~s~~~g~~~~~~~~~t~adgiav~~~g~~~~~~~~~~vd~vv~V~d~ei~~ai~~l~~ 266 (499)
T TIGR01124 196 VIGVEPTDSDCMKQALDAGEPVDLDQVGLFADGVAVKRVGDETFRLCQQYLDDIVTVDTDEVCAAIKDLFE 266 (499)
T ss_pred EEEEEECCChHHHHHHhcCCceeCCCCCCccCcccCCCccHHHHHHHHHhCCEEEEECHHHHHHHHHHHHH
Confidence 9999999876431 11233455555431 14689999999999999998864
No 27
>PLN02970 serine racemase
Probab=100.00 E-value=1.4e-36 Score=294.34 Aligned_cols=233 Identities=18% Similarity=0.155 Sum_probs=182.0
Q ss_pred ccccCcCCCcccccCCCCCCC--CceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHHHH
Q 019410 39 VFSLGHFPTPIHKWNLPNLPH--NTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMADA 116 (341)
Q Consensus 39 ~~~~~~~~TPl~~~~l~~L~~--g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~~A 116 (341)
++...+++|||++ +++|++ |++||+| +|++||+ ||||+|.+.+++..+
T Consensus 20 ~i~~~i~~TPL~~--~~~l~~~~g~~i~~K-------~E~~npt---------------------GSfKdRga~~~i~~~ 69 (328)
T PLN02970 20 RIAPFIHRTPVLT--SSSLDALAGRSLFFK-------CECFQKG---------------------GAFKFRGACNAIFSL 69 (328)
T ss_pred HHhCcCCCCCeee--chhhHHhhCCeEEEE-------ecCCCCC---------------------CCcHHHHHHHHHHHh
Confidence 4555679999999 787776 7899999 6666664 667999999999887
Q ss_pred HH-cCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCccccccCcHH
Q 019410 117 VA-QGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVT 195 (341)
Q Consensus 117 ~~-~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~~~~ 195 (341)
.+ .+.++||++ |+||||+|+|++|+.+|++|+||||..++ ..++..+++|||+|+.++.. ++.
T Consensus 70 ~~~~~~~~vv~a--SsGN~g~alA~~a~~~G~~~~ivvp~~~~--------~~k~~~~~~~GA~Vi~~~~~-~~~----- 133 (328)
T PLN02970 70 SDDQAEKGVVTH--SSGNHAAALALAAKLRGIPAYIVVPKNAP--------ACKVDAVIRYGGIITWCEPT-VES----- 133 (328)
T ss_pred hHhhcCCeEEEE--CCcHHHHHHHHHHHHcCCCEEEEECCCCC--------HHHHHHHHhcCCEEEEeCCC-HHH-----
Confidence 64 445778874 67999999999999999999999999875 34688999999999999863 432
Q ss_pred HHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcCCCCCe
Q 019410 196 LTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAK 275 (341)
Q Consensus 196 ~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~~~~~r 275 (341)
. .+.++++.++. +.|+++ ++.|+....||.+++.||++|+. .||+||+|+|||||++|++.++|..+|++|
T Consensus 134 ~-~~~a~~la~~~-g~~~~~-~~~n~~~~~g~~t~g~Ei~~ql~------~~D~vv~~vG~GG~~~Gi~~~lk~~~~~~k 204 (328)
T PLN02970 134 R-EAVAARVQQET-GAVLIH-PYNDGRVISGQGTIALEFLEQVP------ELDVIIVPISGGGLISGIALAAKAIKPSIK 204 (328)
T ss_pred H-HHHHHHHHHhc-CCEEeC-CCCCcchhhehHHHHHHHHHhcc------CCCEEEEeeCchHHHHHHHHHHHhcCCCCE
Confidence 1 23455555542 455543 34577788899999999999985 499999999999999999999999999999
Q ss_pred EEEEeeCCCCccch----------HhHHHHhhcccCC----------CCCCceEEeccchHHHHHHHHHHH
Q 019410 276 VHAFSVCDDPDYFY----------DYTQGLLDGLNAG----------VDSRDIVNIQNVSVYMTFKNILMN 326 (341)
Q Consensus 276 VigVe~~g~~~~~~----------~~i~~l~~~~~~~----------~~~~~iv~v~d~~~~~~~~~~~~~ 326 (341)
||+|++.+++.... ....++.+++... -..++++.|+|.+++.+++.++..
T Consensus 205 vi~Vep~~~~~~~~s~~~g~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~la~~ 275 (328)
T PLN02970 205 IIAAEPKGADDAAQSKAAGEIITLPVTNTIADGLRASLGDLTWPVVRDLVDDVITVDDKEIIEAMKLCYER 275 (328)
T ss_pred EEEEEECCCcHHHHHHHcCCceeCCCCCCccccccCCcCHHHHHHHHhhCCEEEEECHHHHHHHHHHHHHh
Confidence 99999998753211 1222344444321 135899999999999999988753
No 28
>PRK06110 hypothetical protein; Provisional
Probab=100.00 E-value=9.6e-37 Score=294.63 Aligned_cols=231 Identities=19% Similarity=0.260 Sum_probs=182.4
Q ss_pred ccccCcCCCcccccCCCCCCC--CceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHHHH
Q 019410 39 VFSLGHFPTPIHKWNLPNLPH--NTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMADA 116 (341)
Q Consensus 39 ~~~~~~~~TPl~~~~l~~L~~--g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~~A 116 (341)
++...+++|||++ +++|++ |.+||+| +|++++ +||||+|++.+++.++
T Consensus 14 ~i~~~~~~TPl~~--~~~l~~~~g~~i~~K--------------------------~E~~np--tGS~K~Rga~~~l~~a 63 (322)
T PRK06110 14 VVYAAMPPTPQYR--WPLLAERLGCEVWVK--------------------------HENHTP--TGAFKVRGGLVYFDRL 63 (322)
T ss_pred HHhCcCcCCCccc--chhHHHHhCCeEEEE--------------------------eccCCC--cCCcHHHHHHHHHHHh
Confidence 5567789999999 788876 7899999 666543 5788999999999999
Q ss_pred HHcCC--CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCccccccCcH
Q 019410 117 VAQGA--DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSV 194 (341)
Q Consensus 117 ~~~g~--~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~~~ 194 (341)
.+++. ..||+ +|+||||+++|++|+++|++|+||||...+ ..+.++++.|||+|+.++. .|++.
T Consensus 64 ~~~~~~~~~vv~--aSsGN~g~alA~~a~~~G~~~~ivvp~~~~--------~~k~~~i~~~GA~V~~~~~-~~~~~--- 129 (322)
T PRK06110 64 ARRGPRVRGVIS--ATRGNHGQSVAFAARRHGLAATIVVPHGNS--------VEKNAAMRALGAELIEHGE-DFQAA--- 129 (322)
T ss_pred hhhcCCCceEEE--ECCCHHHHHHHHHHHHcCCCEEEEEcCCCC--------HHHHHHHHHcCCEEEEECC-CHHHH---
Confidence 87753 56665 568999999999999999999999998775 2468999999999999975 35432
Q ss_pred HHHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcCCCCC
Q 019410 195 TLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKA 274 (341)
Q Consensus 195 ~~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~~~~~ 274 (341)
.+. ++++.++. +.|++|.. |+....||.+++.||.+|++ ++|+||+|+|+|||++|++.+++..++++
T Consensus 130 --~~~-a~~~~~~~-~~~~~~~~--~~~~~~G~~t~~~Ei~~q~~------~~D~vv~pvG~Gg~~~Gv~~~~k~~~~~~ 197 (322)
T PRK06110 130 --REE-AARLAAER-GLHMVPSF--HPDLVRGVATYALELFRAVP------DLDVVYVPIGMGSGICGAIAARDALGLKT 197 (322)
T ss_pred --HHH-HHHHHHhc-CCEEcCCC--CChHHhccchHHHHHHhhCC------CCCEEEEecCHHHHHHHHHHHHHHhCCCC
Confidence 222 33444432 46777643 67778899999999999985 48999999999999999999999999999
Q ss_pred eEEEEeeCCCCccch----------HhHHHHhhcccCCC-----------CCCceEEeccchHHHHHHHHHH
Q 019410 275 KVHAFSVCDDPDYFY----------DYTQGLLDGLNAGV-----------DSRDIVNIQNVSVYMTFKNILM 325 (341)
Q Consensus 275 rVigVe~~g~~~~~~----------~~i~~l~~~~~~~~-----------~~~~iv~v~d~~~~~~~~~~~~ 325 (341)
|||+|++.++..... +.+.++.++++... ..++++.|+|.+++..++.++.
T Consensus 198 ~vi~Vep~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~d~~~~Vsd~e~~~a~~~l~~ 269 (322)
T PRK06110 198 RIVGVVSAHAPAYALSFEAGRVVTTPVATTLADGMACRTPDPEALEVIRAGADRIVRVTDDEVAAAMRAYFT 269 (322)
T ss_pred EEEEEeeCCChHHHHHHHcCCcccCCCCCCcccccCCCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHH
Confidence 999999988754321 12345556553211 3679999999999999998874
No 29
>PRK08198 threonine dehydratase; Provisional
Probab=100.00 E-value=1.4e-36 Score=301.86 Aligned_cols=232 Identities=19% Similarity=0.210 Sum_probs=183.6
Q ss_pred ccccCcCCCcccccCCCCCCC--CceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHHHH
Q 019410 39 VFSLGHFPTPIHKWNLPNLPH--NTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMADA 116 (341)
Q Consensus 39 ~~~~~~~~TPl~~~~l~~L~~--g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~~A 116 (341)
++...+++|||++ +++|++ |++||+| +||+++ +||||+|.+.+++..+
T Consensus 15 ~i~~~i~~TPl~~--~~~ls~~~g~~i~~K--------------------------~E~~np--tGS~K~R~a~~~i~~~ 64 (404)
T PRK08198 15 RLKGVVRRTPLEY--SRTLSELTGAEVYLK--------------------------CENLQR--TGSFKIRGAYNKIASL 64 (404)
T ss_pred HHhccCCCCCcee--hhhHHHHhCCEEEEE--------------------------ECCCCC--CCCCHHHHHHHHHHhc
Confidence 5666789999999 788876 8899999 555543 5778999999999887
Q ss_pred H-HcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCccccccCcHH
Q 019410 117 V-AQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVT 195 (341)
Q Consensus 117 ~-~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~~~~ 195 (341)
. +.+.++||++ |+||||+++|++|+++|++|+||||..+| ..|++.++.|||+|++++. .|++.
T Consensus 65 ~~~~~~~~vv~a--SsGN~g~alA~~a~~~G~~~~iv~p~~~~--------~~k~~~~~~~GA~Vi~~~~-~~~~~---- 129 (404)
T PRK08198 65 SEEERARGVVAA--SAGNHAQGVAYAASLLGIKATIVMPETAP--------LSKVKATRSYGAEVVLHGD-VYDEA---- 129 (404)
T ss_pred cHhhcCCEEEEE--CCCHHHHHHHHHHHHcCCCEEEEECCCCC--------HHHHHHHHhCCCEEEEECC-CHHHH----
Confidence 6 4457889985 45999999999999999999999999875 3479999999999999975 35432
Q ss_pred HHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcCCCCCe
Q 019410 196 LTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAK 275 (341)
Q Consensus 196 ~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~~~~~r 275 (341)
+ ..+.++.++. +.+++ .++.|+....||.|++.||++|++ ++|+||+|+|||||++|++.++|..+|++|
T Consensus 130 -~-~~a~~~~~~~-g~~~~-~~~~~~~~~~g~~t~a~EI~~q~~------~~d~vv~~vG~GG~~~Gi~~~~k~~~p~~k 199 (404)
T PRK08198 130 -L-AKAQELAEET-GATFV-HPFDDPDVIAGQGTIGLEILEDLP------DVDTVVVPIGGGGLISGVATAVKALRPEVR 199 (404)
T ss_pred -H-HHHHHHHHhc-CCEec-CCCCCccHHHHHHHHHHHHHHhCC------CCCEEEEEeCHhHHHHHHHHHHHHhCCCCE
Confidence 2 2344445443 34444 345578888999999999999985 589999999999999999999999999999
Q ss_pred EEEEeeCCCCccc----------hHhHHHHhhcccCC-----------CCCCceEEeccchHHHHHHHHHH
Q 019410 276 VHAFSVCDDPDYF----------YDYTQGLLDGLNAG-----------VDSRDIVNIQNVSVYMTFKNILM 325 (341)
Q Consensus 276 VigVe~~g~~~~~----------~~~i~~l~~~~~~~-----------~~~~~iv~v~d~~~~~~~~~~~~ 325 (341)
||||++.+++... .+.+.++++++... -..|+++.|+|.+++.+++.++.
T Consensus 200 iigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~g~~v~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~ 270 (404)
T PRK08198 200 VIGVQAEGAPAMPESLAAGRPVELESVDTIADGIAVKRPGDLTFEIIRELVDDVVTVSDEEIARAILLLLE 270 (404)
T ss_pred EEEEEeCCChHHHHHHHcCCCEecCCCCccccccccCCcCHHHHHHHHHhCCEEEEECHHHHHHHHHHHHH
Confidence 9999999876431 12344555555421 13689999999999999988764
No 30
>PRK06381 threonine synthase; Validated
Probab=100.00 E-value=6.2e-36 Score=288.36 Aligned_cols=189 Identities=22% Similarity=0.192 Sum_probs=156.0
Q ss_pred cCCCcccccCCCCCCC--C-ceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHHHHHHcC
Q 019410 44 HFPTPIHKWNLPNLPH--N-TEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMADAVAQG 120 (341)
Q Consensus 44 ~~~TPl~~~~l~~L~~--g-~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~~A~~~g 120 (341)
+++|||++ +++|++ | .+||+| +|.+|| +||||+|++.+++.+|+++|
T Consensus 13 ~g~TPL~~--~~~l~~~~G~~~i~~K-------~E~~np---------------------tGS~K~R~a~~~l~~a~~~g 62 (319)
T PRK06381 13 PGGTPLLR--ARKLEEELGLRKIYLK-------FEGANP---------------------TGTQKDRIAEAHVRRAMRLG 62 (319)
T ss_pred CCCCceeE--hHhhHHhcCCceEEEE-------ecCCCC---------------------ccCcHHHHHHHHHHHHHHcC
Confidence 48899999 788866 6 599999 444444 57789999999999999999
Q ss_pred CCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCccccccCcHHHHHHH
Q 019410 121 ADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNIL 200 (341)
Q Consensus 121 ~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~ 200 (341)
.++||+ +|+||||+|+|++|+.+|++|+||||...+ ..++++++.|||+|+.++.. |++ .. ..
T Consensus 63 ~~~lv~--aSsGN~g~alA~~aa~~G~~~~ivvp~~~~--------~~~~~~l~~~GA~V~~~~~~-~~~-----~~-~~ 125 (319)
T PRK06381 63 YSGITV--GTCGNYGASIAYFARLYGLKAVIFIPRSYS--------NSRVKEMEKYGAEIIYVDGK-YEE-----AV-ER 125 (319)
T ss_pred CCEEEE--eCCcHHHHHHHHHHHHcCCcEEEEECCCCC--------HHHHHHHHHcCCEEEEcCCC-HHH-----HH-HH
Confidence 999987 467999999999999999999999998764 35799999999999999863 533 11 22
Q ss_pred HHHHHHhCCCcEEeCCCCCch-hHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcC------CCC
Q 019410 201 KEKLLKEGRRPYVIPVGGSNS-IGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLG------TLK 273 (341)
Q Consensus 201 a~~l~~~g~~~~~ip~g~~n~-~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~------~~~ 273 (341)
++++.+. ...|+++.++.|+ .+.+||.+++.||++|+. ..||+||+|+|||||++|++.++++. ++.
T Consensus 126 a~~~~~~-~~~~~~~~~~~n~~~~~~G~~t~a~Ei~~ql~-----~~~D~vv~~vGtGgt~~Gl~~~~~~~~~~g~~~~~ 199 (319)
T PRK06381 126 SRKFAKE-NGIYDANPGSVNSVVDIEAYSAIAYEIYEALG-----DVPDAVAVPVGNGTTLAGIYHGFRRLYDRGKTSRM 199 (319)
T ss_pred HHHHHHH-cCcEecCCCCCCcchHhhhHHHHHHHHHHHhC-----CCCCEEEEcCCccHHHHHHHHHHHHHHhCCCcCCC
Confidence 3344443 2467765555466 678999999999999996 36999999999999999999999987 789
Q ss_pred CeEEEEeeCCCC
Q 019410 274 AKVHAFSVCDDP 285 (341)
Q Consensus 274 ~rVigVe~~g~~ 285 (341)
++||+|++.+..
T Consensus 200 ~~vigVe~~~~~ 211 (319)
T PRK06381 200 PRMIGVSTSGGN 211 (319)
T ss_pred CEEEEEeeCCCC
Confidence 999999998764
No 31
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=100.00 E-value=3.8e-36 Score=289.96 Aligned_cols=232 Identities=16% Similarity=0.137 Sum_probs=178.3
Q ss_pred ccccCcCCCcccccCCCCCCC--CceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHHHH
Q 019410 39 VFSLGHFPTPIHKWNLPNLPH--NTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMADA 116 (341)
Q Consensus 39 ~~~~~~~~TPl~~~~l~~L~~--g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~~A 116 (341)
++...+++|||++ +++|++ |++||+| +|.+|| +||||+|++.+++..+
T Consensus 12 ~i~~~i~~TPl~~--~~~l~~~~g~~l~~K-------~E~~np---------------------tGS~K~R~a~~~i~~~ 61 (317)
T TIGR02991 12 RISGRVEETPLVE--SPSLSELCGVPVHLK-------LEHRQT---------------------TGSFKLRGATNAVLSL 61 (317)
T ss_pred HHhCcCCCCCcee--chhhHHhhCCeEEEE-------eccCCC---------------------CCCcHHHHHHHHHHhh
Confidence 5566779999999 777766 7899999 554444 5778999999998876
Q ss_pred H-HcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCccccccCcHH
Q 019410 117 V-AQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVT 195 (341)
Q Consensus 117 ~-~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~~~~ 195 (341)
. +.+.++||+ +|+||||+|+|++|+++|++|++|||...+ ..|+..++.|||+|+.++.. |++.
T Consensus 62 ~~~~~~~~vv~--aSsGN~g~alA~~a~~~G~~~~v~~p~~~~--------~~k~~~~~~~GA~V~~~~~~-~~~~---- 126 (317)
T TIGR02991 62 SDTQRAAGVVA--ASTGNHGRALAYAAAEEGVRATICMSELVP--------QNKVDEIRRLGAEVRIVGRS-QDDA---- 126 (317)
T ss_pred hHhccCCeEEE--ECCCHHHHHHHHHHHHhCCCEEEEcCCCCC--------HHHHHHHHHcCCEEEEeCCC-HHHH----
Confidence 5 445677886 467999999999999999999999998875 35799999999999999863 5432
Q ss_pred HHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcCCCCCe
Q 019410 196 LTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAK 275 (341)
Q Consensus 196 ~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~~~~~r 275 (341)
.+.++++.++. +.|++ .++.|+....||.+++.||++|+. ++|+||+|+|+|||++|+++++|+.+|++|
T Consensus 127 --~~~a~~~~~~~-g~~~~-~~~~n~~~~~g~~t~a~Ei~~q~~------~~d~vvv~~G~Gg~~~Gi~~~~k~~~p~~~ 196 (317)
T TIGR02991 127 --QEEVERLVADR-GLTML-PPFDHPDIVAGQGTLGLEVVEQMP------DLATVLVPLSGGGLASGVAMAVKAARPDTR 196 (317)
T ss_pred --HHHHHHHHHhc-CCEee-CCCCChHHHhhHHHHHHHHHHhCC------CCCEEEEEcChhHHHHHHHHHHHHhCCCCE
Confidence 12234444432 34444 345588889999999999999985 489999999999999999999999999999
Q ss_pred EEEEeeCCCCccch----------HhHHHHhh----cccC-C--------CCCCceEEeccchHHHHHHHHHH
Q 019410 276 VHAFSVCDDPDYFY----------DYTQGLLD----GLNA-G--------VDSRDIVNIQNVSVYMTFKNILM 325 (341)
Q Consensus 276 VigVe~~g~~~~~~----------~~i~~l~~----~~~~-~--------~~~~~iv~v~d~~~~~~~~~~~~ 325 (341)
||||++++...... +....+++ +.+. . -..|+++.|+|.+++..++.++.
T Consensus 197 vigvep~~~~~~~~s~~~g~~~~~~~~~tia~~l~~g~~~~~~~~~~~~~~~vd~~v~V~d~e~~~a~~~l~~ 269 (317)
T TIGR02991 197 VIGVSMERGAAMKASLQAGRPVLVAELPTLADSLGGGIGLDNRVTFAMCKALLDEIVLVSEAEIAAGIRHAYA 269 (317)
T ss_pred EEEEEECCchHHHHHHHcCCcccCCCCCChhhhhhhccCCCCHHHHHHHHHhCCeEEEECHHHHHHHHHHHHH
Confidence 99999986543211 11112333 2221 0 13689999999999999888875
No 32
>PRK06382 threonine dehydratase; Provisional
Probab=100.00 E-value=3.6e-36 Score=299.16 Aligned_cols=232 Identities=18% Similarity=0.220 Sum_probs=182.2
Q ss_pred ccccCcCCCcccccCCCCCCC--CceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHHHH
Q 019410 39 VFSLGHFPTPIHKWNLPNLPH--NTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMADA 116 (341)
Q Consensus 39 ~~~~~~~~TPl~~~~l~~L~~--g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~~A 116 (341)
|+...+++|||++ +++|++ |++||+| +|++++ +||||+|++.+++..+
T Consensus 18 ~~~~~i~~TPl~~--~~~ls~~~g~~v~~K--------------------------~E~~np--tGSfK~Rga~~~i~~~ 67 (406)
T PRK06382 18 YLEGYLNRTPLIH--STTFGDEYGGDIYFK--------------------------LENFQK--TGSFKSRGAVFKFSKL 67 (406)
T ss_pred HHhCcCCCCCeeE--hhhhHHHhCCEEEEE--------------------------ecCCCC--CCCCHHHHHHHHHHhc
Confidence 6777889999999 788876 8899999 666643 6888999999999877
Q ss_pred HHcC-CCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCccccccCcHH
Q 019410 117 VAQG-ADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVT 195 (341)
Q Consensus 117 ~~~g-~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~~~~ 195 (341)
.+.+ .++||++ |+||||+|+|++|+++|++|+||||..+| ..+++.++.|||+|++++. .|+++
T Consensus 68 ~~~~~~~gvv~a--SsGN~g~a~A~aa~~~G~~~~ivmp~~~~--------~~k~~~~~~~GA~Vv~~~~-~~~~a---- 132 (406)
T PRK06382 68 SEDELRNGVITA--SAGNHAQGVAYAASINGIDAKIVMPEYTI--------PQKVNAVEAYGAHVILTGR-DYDEA---- 132 (406)
T ss_pred chhccCCeEEEE--CCCHHHHHHHHHHHHcCCCEEEEEcCCCH--------HHHHHHHHHcCCEEEEECC-CHHHH----
Confidence 6544 3568875 45999999999999999999999999875 3478899999999999986 35432
Q ss_pred HHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcCCCCCe
Q 019410 196 LTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAK 275 (341)
Q Consensus 196 ~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~~~~~r 275 (341)
.+.+++++++. +.++++ ++.|+..+.|+.|++.||++|++ .+|+||+|+|+||+++|++.++|..+|++|
T Consensus 133 --~~~a~~la~~~-~~~~v~-~~~~~~~i~g~~t~~~Ei~eq~~------~~d~vvvpvG~GG~~~Gv~~~~k~~~p~~~ 202 (406)
T PRK06382 133 --HRYADKIAMDE-NRTFIE-AFNDRWVISGQGTIGLEIMEDLP------DLDQIIVPVGGGGLISGIALAAKHINPNVK 202 (406)
T ss_pred --HHHHHHHHHhc-CCEecC-ccCChHHHHHHHHHHHHHHHhcC------CCCEEEEeeChHHHHHHHHHHHHHhCCCCE
Confidence 23455565543 345553 34578888899999999999985 599999999999999999999999999999
Q ss_pred EEEEeeCCCCccch----------HhHHHHhhcccCCC-----------CCCceEEeccchHHHHHHHHHH
Q 019410 276 VHAFSVCDDPDYFY----------DYTQGLLDGLNAGV-----------DSRDIVNIQNVSVYMTFKNILM 325 (341)
Q Consensus 276 VigVe~~g~~~~~~----------~~i~~l~~~~~~~~-----------~~~~iv~v~d~~~~~~~~~~~~ 325 (341)
||||++.+++.... .....+++++.... ..++++.|+|.+++..++.++.
T Consensus 203 vigVe~~~~~~~~~~~~~~~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~d~~v~V~d~ei~~a~~~l~~ 273 (406)
T PRK06382 203 IIGIESELSDSMKASLREGKIVAHTSGVSICDGISVKYPGDLTFDIAKNYVDDIVTVTEESVSKAIYKLFE 273 (406)
T ss_pred EEEEEECCChHHHHHHHcCCceecCCCCCccccccCCCccHHHHHHHHHcCCEEEEECHHHHHHHHHHHHH
Confidence 99999998764310 01123445544321 3689999999999999887764
No 33
>PLN02356 phosphateglycerate kinase
Probab=100.00 E-value=1.3e-35 Score=294.01 Aligned_cols=242 Identities=19% Similarity=0.137 Sum_probs=175.5
Q ss_pred ccccCcCCCcccccCCCCCCC--CceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHHHH
Q 019410 39 VFSLGHFPTPIHKWNLPNLPH--NTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMADA 116 (341)
Q Consensus 39 ~~~~~~~~TPl~~~~l~~L~~--g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~~A 116 (341)
.+...+++|||++ +++|+. |++||+| +|++||+ ||||+|.+.+++.+|
T Consensus 46 ~~~~~ig~TPLv~--~~~l~~~~g~~v~~K-------lE~~nPt---------------------GS~KdR~A~~~i~~a 95 (423)
T PLN02356 46 GLIDAIGNTPLIR--INSLSEATGCEILGK-------CEFLNPG---------------------GSVKDRVAVKIIEEA 95 (423)
T ss_pred hHHhhcCCCceEE--CcccccccCCEEEEE-------eccCCCC---------------------CCHHHHHHHHHHHHH
Confidence 4555679999999 777765 7899999 8888875 566999999999999
Q ss_pred HHcCC---CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCc------c
Q 019410 117 VAQGA---DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKE------E 187 (341)
Q Consensus 117 ~~~g~---~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~------~ 187 (341)
+++|. ..+|+. +|+||||+++|++|+.+|++|+||||+.++ ..|++.+++|||+|+.++.. .
T Consensus 96 ~~~g~~~~~g~Vve-aSSGN~g~alA~~aa~~G~~~~ivvP~~~s--------~~K~~~ir~~GAeVi~v~~~~~~~~~~ 166 (423)
T PLN02356 96 LESGQLFPGGVVTE-GSAGSTAISLATVAPAYGCKCHVVIPDDVA--------IEKSQILEALGATVERVRPVSITHKDH 166 (423)
T ss_pred HhCCccCCCCEEEE-eCCHHHHHHHHHHHHHcCCcEEEEECCCCc--------HHHHHHHHHcCCEEEEECCccCCCcch
Confidence 98764 234443 467999999999999999999999999875 45799999999999999631 1
Q ss_pred ccccCcH--HHHHHHHHHHHHh----------------------------CCCcEEeCCCCCchhHH-HHHHHHHHHHHH
Q 019410 188 YSKIGSV--TLTNILKEKLLKE----------------------------GRRPYVIPVGGSNSIGT-WGYIEAIKEIEQ 236 (341)
Q Consensus 188 ~~~~~~~--~~~~~~a~~l~~~----------------------------g~~~~~ip~g~~n~~~~-~G~~t~a~EI~~ 236 (341)
+...... +.++++++++.+. .++ ++++.++.|+.+. .++..+|.||++
T Consensus 167 ~~~~a~~~~~~a~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~q~~n~~n~~ahg~gTg~EI~e 245 (423)
T PLN02356 167 YVNIARRRALEANELASKRRKGSETDGIHLEKTNGCISEEEKENSLFSSSCTG-GFFADQFENLANFRAHYEGTGPEIWE 245 (423)
T ss_pred hHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccCCCC-cEecCccCCcchHHHHHhhHHHHHHH
Confidence 2100000 0112222222110 012 3445667777762 233345999999
Q ss_pred HHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcCCCCCeEEEEeeCCCCccch--------------HhH----HHHhhc
Q 019410 237 QLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFY--------------DYT----QGLLDG 298 (341)
Q Consensus 237 Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~~~~~rVigVe~~g~~~~~~--------------~~i----~~l~~~ 298 (341)
|+. .++|+||+|+|||||++|+++++|+.+|++||++||+.++..+.. +.+ ..++++
T Consensus 246 Ql~-----g~~D~vVv~vGtGGti~Gva~~lK~~~P~vkVigVep~~s~~~~~~~~~~~~~~s~~~G~~~~~~~~tia~G 320 (423)
T PLN02356 246 QTQ-----GNLDAFVAAAGTGGTLAGVSRFLQEKNPNIKCFLIDPPGSGLFNKVTRGVMYTREEAEGRRLKNPFDTITEG 320 (423)
T ss_pred hcC-----CCCCEEEeCCCchHHHHHHHHHHHHhCCCCEEEEEecCCCccccccccchhhhhhhhcCCccCCCCCeecCc
Confidence 985 369999999999999999999999999999999999987652210 000 123444
Q ss_pred ccCCC--------CCCceEEeccchHHHHHHHHHH
Q 019410 299 LNAGV--------DSRDIVNIQNVSVYMTFKNILM 325 (341)
Q Consensus 299 ~~~~~--------~~~~iv~v~d~~~~~~~~~~~~ 325 (341)
++.+. .+|+++.|+|.+++..++.++.
T Consensus 321 ig~~~~~~~~~~~~vD~~v~Vsd~ea~~a~r~L~~ 355 (423)
T PLN02356 321 IGINRLTQNFLMAKLDGAFRGTDKEAVEMSRYLLK 355 (423)
T ss_pred CcCCCCChhHhHHhCCcEEEECHHHHHHHHHHHHH
Confidence 44321 3789999999999999988875
No 34
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=100.00 E-value=3.8e-36 Score=288.20 Aligned_cols=235 Identities=23% Similarity=0.232 Sum_probs=192.1
Q ss_pred cccccCcCCCcccccCCCCCCC--CceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHHH
Q 019410 38 HVFSLGHFPTPIHKWNLPNLPH--NTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMAD 115 (341)
Q Consensus 38 ~~~~~~~~~TPl~~~~l~~L~~--g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~~ 115 (341)
+++..++-.|||.+ .-.|++ |.++|+| ||||++ .||||.|++.+++..
T Consensus 58 ~~i~~~~~~TPl~~--s~~lS~~~g~~vyLK--------------------------~E~lQp--sgSFK~RGa~~~~~k 107 (457)
T KOG1250|consen 58 FKIYPVIVETPLLK--SVALSKKAGMPVYLK--------------------------REDLQP--SGSFKIRGAGNALQK 107 (457)
T ss_pred hccccceecccchh--hhhhhhhcCCceEEE--------------------------ehhccc--ccceehhhHHHHHHH
Confidence 35667778899988 334555 8999999 999985 799999999999887
Q ss_pred HHHcC-CCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCccccccCcH
Q 019410 116 AVAQG-ADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSV 194 (341)
Q Consensus 116 A~~~g-~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~~~ 194 (341)
.-+++ +.+|+++ |.||||+|+|++|+++|++++||||..+|. -+++.++.+||+|++.+. .|+++
T Consensus 108 la~~~~~~gVias--SaGNha~a~Ayaa~~LgipaTIVmP~~tp~--------~kiq~~~nlGA~Vil~G~-~~deA--- 173 (457)
T KOG1250|consen 108 LAKQQKKAGVIAS--SAGNHAQAAAYAARKLGIPATIVMPVATPL--------MKIQRCRNLGATVILSGE-DWDEA--- 173 (457)
T ss_pred HHHhhhcCceEEe--cCccHHHHHHHHHHhcCCceEEEecCCChH--------HHHHHHhccCCEEEEecc-cHHHH---
Confidence 65555 7888874 569999999999999999999999998874 369999999999999986 47654
Q ss_pred HHHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcCCCCC
Q 019410 195 TLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKA 274 (341)
Q Consensus 195 ~~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~~~~~ 274 (341)
...+.+++++. +..+||. +++|..++|+.|++.||.+|+.. .+++||||||+||+++|++.|++..+|++
T Consensus 174 ---k~~a~~lAke~-gl~yI~p-fDhP~I~aGqgTig~EIl~ql~~-----~~~AI~vpVGGGGLiaGIat~vk~~~p~v 243 (457)
T KOG1250|consen 174 ---KAFAKRLAKEN-GLTYIPP-FDHPDIWAGQGTIGLEILEQLKE-----PDGAIVVPVGGGGLIAGIATGVKRVGPHV 243 (457)
T ss_pred ---HHHHHHHHHhc-CceecCC-CCCchhhcCcchHHHHHHHhhcC-----CCCeEEEecCCchhHHHHHHHHHHhCCCC
Confidence 33455566554 3444443 35788888999999999999973 46699999999999999999999999999
Q ss_pred eEEEEeeCCCCcc----------chHhHHHHhhcccCCC-----------CCCceEEeccchHHHHHHHHHHH
Q 019410 275 KVHAFSVCDDPDY----------FYDYTQGLLDGLNAGV-----------DSRDIVNIQNVSVYMTFKNILMN 326 (341)
Q Consensus 275 rVigVe~~g~~~~----------~~~~i~~l~~~~~~~~-----------~~~~iv~v~d~~~~~~~~~~~~~ 326 (341)
+|||||..+...+ ....+.+++++++... ..|++|.|.|.++|-.++++.-+
T Consensus 244 kIIGVEt~~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~Vg~~tf~~a~~~~d~vvvV~~~ei~aaI~~l~ed 316 (457)
T KOG1250|consen 244 KIIGVETEGAHSFNASLKAGKPVTLPKITSLADGLAVKTVGENTFELAQKLVDRVVVVEDDEIAAAILRLFED 316 (457)
T ss_pred ceEEEeecCcHHHHHHHhcCCeeecccccchhcccccchhhHHHHHHHHhcCceEEEeccHHHHHHHHHHHHh
Confidence 9999999987553 2456777888888632 47899999999999999987543
No 35
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=100.00 E-value=2.6e-35 Score=296.25 Aligned_cols=236 Identities=18% Similarity=0.130 Sum_probs=182.2
Q ss_pred ccCcCCCcccccCCCCCCC--CceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHHHHHH
Q 019410 41 SLGHFPTPIHKWNLPNLPH--NTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMADAVA 118 (341)
Q Consensus 41 ~~~~~~TPl~~~~l~~L~~--g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~~A~~ 118 (341)
...+++|||++ +++|++ |++||+| +|++++ +||||+|++.+++.+|++
T Consensus 6 ~~~~~~TPl~~--~~~l~~~~~~~i~~K--------------------------~E~~np--tGS~K~R~a~~~l~~a~~ 55 (454)
T TIGR01137 6 IDLIGNTPLVR--LNKVSKGIKCELLAK--------------------------CEFFNP--GGSVKDRIALRMIEDAEA 55 (454)
T ss_pred HHhcCCCceEE--ccccCCCCCceEEEE--------------------------EhhcCC--CcchHHHHHHHHHHHHHH
Confidence 34568999999 787777 6799999 555543 588899999999999999
Q ss_pred cCC----CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCc-cccccCc
Q 019410 119 QGA----DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKE-EYSKIGS 193 (341)
Q Consensus 119 ~g~----~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~-~~~~~~~ 193 (341)
+|+ ++||++ |+||||+|+|++|+.+|++|++|||..++ ..|+..++.|||+|+.++.. .++.
T Consensus 56 ~g~~~~g~~vv~~--ssGN~g~alA~~a~~~G~~~~iv~p~~~~--------~~k~~~~~~~GA~v~~~~~~~~~~~--- 122 (454)
T TIGR01137 56 SGRLKPGDTIIEP--TSGNTGIGLALVAAIKGYKCIIVLPEKMS--------NEKVDVLKALGAEIVRTPTAAAFDS--- 122 (454)
T ss_pred cCCCCCCCEEEEe--CCcHHHHHHHHHHHHcCCeEEEEeCCCcC--------HHHHHHHHHCCCEEEEcCCccCCCc---
Confidence 887 788875 67999999999999999999999998875 35899999999999999853 2332
Q ss_pred HHHHHHHHHHHHHhCCCcEEeCCCCCchhHH-HHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcCCC
Q 019410 194 VTLTNILKEKLLKEGRRPYVIPVGGSNSIGT-WGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTL 272 (341)
Q Consensus 194 ~~~~~~~a~~l~~~g~~~~~ip~g~~n~~~~-~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~~~ 272 (341)
.....+.++++++++++ ++++.++.|+.+. .||.+++.||++|++ ..||+||+|+|||||++|++.+++...|
T Consensus 123 ~~~~~~~a~~l~~~~~~-~~~~~~~~~~~~~~~~~~t~~~Ei~~q~~-----~~~d~vv~~vG~Gg~~~G~~~~~~~~~~ 196 (454)
T TIGR01137 123 PESHIGVAKRLVREIPG-AHILDQYNNPSNPLAHYDGTGPEILEQCE-----GKLDMFVAGAGTGGTITGIARYLKESNP 196 (454)
T ss_pred hHHHHHHHHHHHHhCCC-cEecccCCChhhHHHHHHhhHHHHHHHhC-----CCCCEEEEecCchHHHHHHHHHHHhhCC
Confidence 11122345566655434 4556676677664 589999999999996 2699999999999999999999999999
Q ss_pred CCeEEEEeeCCCCccchHhH------HHHhhcccCC-----C---CCCceEEeccchHHHHHHHHHH
Q 019410 273 KAKVHAFSVCDDPDYFYDYT------QGLLDGLNAG-----V---DSRDIVNIQNVSVYMTFKNILM 325 (341)
Q Consensus 273 ~~rVigVe~~g~~~~~~~~i------~~l~~~~~~~-----~---~~~~iv~v~d~~~~~~~~~~~~ 325 (341)
+++|+||+++++..+..+.+ .....+++.. + ..++++.|.|.+++..++.++.
T Consensus 197 ~~~vi~ve~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~~V~~~e~~~a~~~l~~ 263 (454)
T TIGR01137 197 KCRIVGADPEGSILAQPENLNKTGRTPYKVEGIGYDFIPTVLDRKVVDEWIKTDDKESFKMARRLIK 263 (454)
T ss_pred CCEEEEEecCCCcccCCCcccCCCCCCccCCCCCCCCCCCcCCchhCCeEEEECHHHHHHHHHHHHH
Confidence 99999999998754332111 1122233221 1 3578999999999988887775
No 36
>PRK09224 threonine dehydratase; Reviewed
Probab=100.00 E-value=1.3e-35 Score=302.20 Aligned_cols=234 Identities=21% Similarity=0.184 Sum_probs=185.1
Q ss_pred cccccCcCCCcccccCCCCCCC--CceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHHH
Q 019410 38 HVFSLGHFPTPIHKWNLPNLPH--NTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMAD 115 (341)
Q Consensus 38 ~~~~~~~~~TPl~~~~l~~L~~--g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~~ 115 (341)
.|+.....+|||++ +++|++ |++||+| |||+++ +||||+|++.+++..
T Consensus 12 ~~v~~~~~~TPL~~--~~~Ls~~~g~~i~lK--------------------------~E~lqp--tgSfK~RgA~n~i~~ 61 (504)
T PRK09224 12 ARVYDVAQETPLEK--APKLSARLGNQVLLK--------------------------REDLQP--VFSFKLRGAYNKMAQ 61 (504)
T ss_pred HHhcCcCCCCCcee--hhHhHHHhCCEEEEE--------------------------ecCCCC--CCCChHHHHHHHHHh
Confidence 36666779999999 778876 8899999 888863 789999999998887
Q ss_pred HH-HcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCccccccCcH
Q 019410 116 AV-AQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSV 194 (341)
Q Consensus 116 A~-~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~~~ 194 (341)
+. +++.++||++ |+||||+|+|++|+++|++|+||||..+| ..|++.++++||+|++++. .|+++
T Consensus 62 l~~~~~~~gvV~a--SaGNha~avA~aa~~lGi~~~IvmP~~tp--------~~K~~~~r~~GA~Vi~~g~-~~~~a--- 127 (504)
T PRK09224 62 LTEEQLARGVITA--SAGNHAQGVALSAARLGIKAVIVMPVTTP--------DIKVDAVRAFGGEVVLHGD-SFDEA--- 127 (504)
T ss_pred hhHHhcCCEEEEE--CcCHHHHHHHHHHHHcCCCEEEEECCCCC--------HHHHHHHHhCCCEEEEECC-CHHHH---
Confidence 64 3456789986 46999999999999999999999998875 3478999999999999985 46542
Q ss_pred HHHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcCCCCC
Q 019410 195 TLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKA 274 (341)
Q Consensus 195 ~~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~~~~~ 274 (341)
...+++++++. +.++++. +.|+..+.|+.|++.||++|++ ..+|+||+|+|||||++|++.++|..+|++
T Consensus 128 ---~~~a~~l~~~~-g~~~v~~-f~~~~~i~G~gTi~~EI~~q~~-----~~~D~vvvpvGgGGliaGia~~lk~~~p~~ 197 (504)
T PRK09224 128 ---YAHAIELAEEE-GLTFIHP-FDDPDVIAGQGTIAMEILQQHP-----HPLDAVFVPVGGGGLIAGVAAYIKQLRPEI 197 (504)
T ss_pred ---HHHHHHHHHhc-CCEEeCC-CCCcHHHHhHHHHHHHHHHhcc-----CCCCEEEEecChhHHHHHHHHHHHHhCCCC
Confidence 22345555543 3444432 3578888999999999999986 259999999999999999999999999999
Q ss_pred eEEEEeeCCCCccc----------hHhHHHHhhcccCC-----------CCCCceEEeccchHHHHHHHHHH
Q 019410 275 KVHAFSVCDDPDYF----------YDYTQGLLDGLNAG-----------VDSRDIVNIQNVSVYMTFKNILM 325 (341)
Q Consensus 275 rVigVe~~g~~~~~----------~~~i~~l~~~~~~~-----------~~~~~iv~v~d~~~~~~~~~~~~ 325 (341)
|||||++.+++... ...+..++++++.. -..|+++.|+|.++|..++.++-
T Consensus 198 kVigVe~~~~~~~~~s~~~g~~~~~~~~~~~adg~av~~~g~~~~~~~~~~vd~~v~Vsd~ei~~a~~~l~~ 269 (504)
T PRK09224 198 KVIGVEPEDSACLKAALEAGERVDLPQVGLFADGVAVKRIGEETFRLCQEYVDDVITVDTDEICAAIKDVFE 269 (504)
T ss_pred EEEEEEECCChHHHHHHhcCCCccCCCCCcccCcccCCCccHHHHHHHHhcCCeEEEECHHHHHHHHHHHHH
Confidence 99999998875431 12223344554421 14689999999999999988753
No 37
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=100.00 E-value=1e-35 Score=296.10 Aligned_cols=233 Identities=19% Similarity=0.209 Sum_probs=179.5
Q ss_pred ccccCcCCCcccccCCCCCCC--CceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHHHH
Q 019410 39 VFSLGHFPTPIHKWNLPNLPH--NTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMADA 116 (341)
Q Consensus 39 ~~~~~~~~TPl~~~~l~~L~~--g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~~A 116 (341)
++...+++|||++ ++.|++ |.+||+| +|++++ +||||+|++.+++..+
T Consensus 9 ~i~~~i~~TPl~~--~~~ls~~~g~~iy~K--------------------------~E~~~p--tGSfK~RgA~~~i~~l 58 (409)
T TIGR02079 9 RLKEVVPHTPLQL--NERLSEKYGANIYLK--------------------------REDLQP--VRSYKIRGAYNFLKQL 58 (409)
T ss_pred HHhCcCCCCCccc--cHHHHHHhCCEEEEE--------------------------ecCCCC--CCCcHHHHHHHHHHhC
Confidence 5667789999999 788877 8899999 666653 6889999999998774
Q ss_pred H-HcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEE---EEECCccccccC
Q 019410 117 V-AQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHI---ELISKEEYSKIG 192 (341)
Q Consensus 117 ~-~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV---~~v~~~~~~~~~ 192 (341)
. ++..++||++ |+||||+++|++|+++|++|+||||..+| ..|+..++.|||+| +.++. .|++
T Consensus 59 ~~~~~~~gvv~a--SsGN~g~a~A~~a~~~G~~~~iv~p~~~~--------~~k~~~~~~~GA~vv~v~~~g~-~~~~-- 125 (409)
T TIGR02079 59 SDAQLAKGVVCA--SAGNHAQGFAYACRHLGVHGTVFMPATTP--------KQKIDRVKIFGGEFIEIILVGD-TFDQ-- 125 (409)
T ss_pred CHHhhCCEEEEE--CccHHHHHHHHHHHHcCCCEEEEECCCCC--------HHHHHHHHHcCCCeeEEEEeCC-CHHH--
Confidence 3 3445778875 57999999999999999999999998875 34789999999974 44443 3543
Q ss_pred cHHHHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcCCC
Q 019410 193 SVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTL 272 (341)
Q Consensus 193 ~~~~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~~~ 272 (341)
.++. +.++.++. +.++++. +.|+....|+.|++.||++|++ ..||+||+|+||||+++|++.++|..+|
T Consensus 126 ---a~~~-a~~~~~~~-g~~~~~~-~~~~~~~~g~~ti~~Ei~~q~~-----~~~D~vv~pvG~GG~~~Gia~~~k~~~p 194 (409)
T TIGR02079 126 ---CAAA-AREHVEDH-GGTFIPP-FDDPRIIEGQGTVAAEILDQLP-----EKPDYVVVPVGGGGLISGLTTYLAGTSP 194 (409)
T ss_pred ---HHHH-HHHHHHhc-CCEEeCC-CCCHhHhhhhHHHHHHHHHhcC-----CCCCEEEEEecHhHHHHHHHHHHHHhCC
Confidence 2232 34444432 3455543 4578888899999999999986 2599999999999999999999999999
Q ss_pred CCeEEEEeeCCCCccch----------HhHHHHhhcccCC-----------CCCCceEEeccchHHHHHHHHHH
Q 019410 273 KAKVHAFSVCDDPDYFY----------DYTQGLLDGLNAG-----------VDSRDIVNIQNVSVYMTFKNILM 325 (341)
Q Consensus 273 ~~rVigVe~~g~~~~~~----------~~i~~l~~~~~~~-----------~~~~~iv~v~d~~~~~~~~~~~~ 325 (341)
++|||||++.+.+.... ..+..++++++.. -..|++|.|+|.+++.+++.++.
T Consensus 195 ~~~vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~g~~v~~~g~~~~~~~~~~vd~vv~V~d~e~~~a~~~l~~ 268 (409)
T TIGR02079 195 KTKIIGVEPEGAPSMKASLEAGEVVTLDKIDNFVDGAAVKRVGDLNFKALKDVPDEVTLVPEGAVCTTILDLYN 268 (409)
T ss_pred CCEEEEEEeCCCCcHHHHHHCCCceecCCCCCeeccccCCCCcHHHHHHHHHhCCcEEEECHHHHHHHHHHHHH
Confidence 99999999998765321 1223344544431 13689999999999999888774
No 38
>PRK06608 threonine dehydratase; Provisional
Probab=100.00 E-value=1.1e-35 Score=289.02 Aligned_cols=231 Identities=21% Similarity=0.201 Sum_probs=181.2
Q ss_pred ccccCcCCCcccccCCCCCCC--CceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHHHH
Q 019410 39 VFSLGHFPTPIHKWNLPNLPH--NTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMADA 116 (341)
Q Consensus 39 ~~~~~~~~TPl~~~~l~~L~~--g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~~A 116 (341)
++...+++|||++ +++|++ |++||+| +||+++ +||||+|++.+++.+|
T Consensus 16 ~i~~~i~~TPl~~--~~~l~~~~g~~l~~K--------------------------~E~~np--tGS~K~R~a~~~v~~a 65 (338)
T PRK06608 16 RIKQYLHLTPIVH--SESLNEMLGHEIFFK--------------------------VESLQK--TGAFKVRGVLNHLLEL 65 (338)
T ss_pred HHhCcCcCCCccc--hHhHHHHhCCEEEEE--------------------------eCCCCC--CCCcHHHHHHHHHHHh
Confidence 5666789999999 788876 8899999 666543 6788999999999999
Q ss_pred HHcCC--CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCccccccCcH
Q 019410 117 VAQGA--DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSV 194 (341)
Q Consensus 117 ~~~g~--~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~~~ 194 (341)
.++|. ++||++ |+||||+++|++|+++|++|++|||..++ ..|++++++|||+|+.++. +++
T Consensus 66 ~~~g~~~~~vv~~--SsGN~g~alA~~a~~~G~~~~vv~p~~~~--------~~k~~~l~~~GA~V~~~~~--~~~---- 129 (338)
T PRK06608 66 KEQGKLPDKIVAY--STGNHGQAVAYASKLFGIKTRIYLPLNTS--------KVKQQAALYYGGEVILTNT--RQE---- 129 (338)
T ss_pred hhhcCcCCeEEEE--CCCHHHHHHHHHHHHcCCCEEEEECCCCC--------HHHHHHHHhCCCEEEEECC--HHH----
Confidence 99887 688864 67999999999999999999999998875 3479999999999999964 221
Q ss_pred HHHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcCCCCC
Q 019410 195 TLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKA 274 (341)
Q Consensus 195 ~~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~~~~~ 274 (341)
..+. +++ .+. ++.|++++ +.|+....||.+++.||++|++ .++|+||+|+|||||++|++.+++..++++
T Consensus 130 -~~~~-a~~-~~~-~~~~~~~~-~~~~~~~~g~~t~a~Ei~~q~~-----~~~D~vv~~vG~GGt~~Gi~~~~k~~~~~~ 199 (338)
T PRK06608 130 -AEEK-AKE-DEE-QGFYYIHP-SDSDSTIAGAGTLCYEALQQLG-----FSPDAIFASCGGGGLISGTYLAKELISPTS 199 (338)
T ss_pred -HHHH-HHH-HHh-CCCEEcCC-CCCHHHhccHHHHHHHHHHhcC-----CCcCEEEEeechhHHHHHHHHHHHhcCCCC
Confidence 1222 333 332 24676664 4578888899999999999985 369999999999999999999999999999
Q ss_pred eEEEEeeCCCCccch-----------HhHHHHhhcccCC-C---------CCCceEEeccchHHHHHHHHHH
Q 019410 275 KVHAFSVCDDPDYFY-----------DYTQGLLDGLNAG-V---------DSRDIVNIQNVSVYMTFKNILM 325 (341)
Q Consensus 275 rVigVe~~g~~~~~~-----------~~i~~l~~~~~~~-~---------~~~~iv~v~d~~~~~~~~~~~~ 325 (341)
+|||||+.+.+.... .....+.+++... + ..|+++.|+|.+++...+.++.
T Consensus 200 ~vigVep~~~~~~~~s~~~g~~~~~~~~~~t~~~gl~~~~~~~~~~~~~~~~d~~v~Vsd~e~~~a~~~l~~ 271 (338)
T PRK06608 200 LLIGSEPLNANDAYLSLKNNKIYRLNYSPNTIADGLKTLSVSARTFEYLKKLDDFYLVEEYEIYYWTAWLTH 271 (338)
T ss_pred EEEEEeeCCChHHHHHHHcCCeEeCCCCCCCeecccCCCCCCHHHHHHHHhCCCEEEECHHHHHHHHHHHHH
Confidence 999999988753210 1112344444321 1 3578999999999998887764
No 39
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=100.00 E-value=1.2e-35 Score=286.65 Aligned_cols=233 Identities=18% Similarity=0.211 Sum_probs=181.8
Q ss_pred ccccCcCCCcccccCCCCCCC--C-ceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHHH
Q 019410 39 VFSLGHFPTPIHKWNLPNLPH--N-TEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMAD 115 (341)
Q Consensus 39 ~~~~~~~~TPl~~~~l~~L~~--g-~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~~ 115 (341)
+++++.++|||++ +++|++ | .+||+| +|++++ +||||+|++.+++.+
T Consensus 15 ~~~l~~g~TPl~~--~~~l~~~~g~~~i~~K--------------------------~E~~np--tGS~K~R~a~~~l~~ 64 (324)
T cd01563 15 IVSLGEGNTPLVR--APRLGERLGGKNLYVK--------------------------DEGLNP--TGSFKDRGMTVAVSK 64 (324)
T ss_pred cccCCCCCCceee--chhhHhhcCCCceEEE--------------------------ecCCCC--cccHHHhhHHHHHHH
Confidence 6899999999999 788875 4 799999 555532 677899999999999
Q ss_pred HHHcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCccccccCcHH
Q 019410 116 AVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVT 195 (341)
Q Consensus 116 A~~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~~~~ 195 (341)
+.++|.++||+. |+||||+|+|++|+.+|++|++|||.+++ ..++++++++||+|+.++. .+++
T Consensus 65 a~~~g~~~vv~~--SsGN~g~alA~~a~~~G~~~~ivvp~~~~--------~~k~~~l~~~GA~Vi~~~~-~~~~----- 128 (324)
T cd01563 65 AKELGVKAVACA--STGNTSASLAAYAARAGIKCVVFLPAGKA--------LGKLAQALAYGATVLAVEG-NFDD----- 128 (324)
T ss_pred HHHcCCCEEEEe--CCCHHHHHHHHHHHHcCCceEEEEeCCCC--------HHHHHHHHHcCCEEEEECC-cHHH-----
Confidence 999999999974 67999999999999999999999998875 3579999999999999986 3533
Q ss_pred HHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcCC----
Q 019410 196 LTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGT---- 271 (341)
Q Consensus 196 ~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~~---- 271 (341)
. ...++++.++. .+++ .++.|+.+..||.+++.||++|+.. ..+|+||+|+|||||++|++.+++...
T Consensus 129 ~-~~~a~~~~~~~--~~~~-~~~~n~~~~~g~~t~~~Ei~~q~~~----~~~d~vv~~vGtGg~~~G~~~~~k~~~~~g~ 200 (324)
T cd01563 129 A-LRLVRELAEEN--WIYL-SNSLNPYRLEGQKTIAFEIAEQLGW----EVPDYVVVPVGNGGNITAIWKGFKELKELGL 200 (324)
T ss_pred H-HHHHHHHHHhc--Ceec-cCCCCcceecchhhhHHHHHHHcCC----CCCCEEEEecCCcHHHHHHHHHHHHHHhCCc
Confidence 2 22345555543 3333 3457899999999999999999851 359999999999999999999999764
Q ss_pred --CCCeEEEEeeCCCCccchH------------hHHHHhhcccCCC-------------CCCceEEeccchHHHHHHHHH
Q 019410 272 --LKAKVHAFSVCDDPDYFYD------------YTQGLLDGLNAGV-------------DSRDIVNIQNVSVYMTFKNIL 324 (341)
Q Consensus 272 --~~~rVigVe~~g~~~~~~~------------~i~~l~~~~~~~~-------------~~~~iv~v~d~~~~~~~~~~~ 324 (341)
++++||||++.+....... ....+.++++... ..++++.|+|.+.+.+++.++
T Consensus 201 ~~~~~~vigve~~~~~~~~~~~~~g~~~~~~~~~~~t~~~gl~~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~ 280 (324)
T cd01563 201 IDRLPRMVGVQAEGAAPIVRAFKEGKDDIEPVENPETIATAIRIGNPASGPKALRAVRESGGTAVAVSDEEILEAQKLLA 280 (324)
T ss_pred cccCCeEEEEecCCCCHHHHHHHcCCCccCcCCCCCceeeeeecCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHH
Confidence 5899999999886532210 1112233332210 135899999999999988877
Q ss_pred H
Q 019410 325 M 325 (341)
Q Consensus 325 ~ 325 (341)
.
T Consensus 281 ~ 281 (324)
T cd01563 281 R 281 (324)
T ss_pred h
Confidence 5
No 40
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=100.00 E-value=2.7e-35 Score=291.43 Aligned_cols=238 Identities=18% Similarity=0.148 Sum_probs=177.5
Q ss_pred ccCcCCCcccccCCCCCCC--C--------ceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHH
Q 019410 41 SLGHFPTPIHKWNLPNLPH--N--------TEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLE 110 (341)
Q Consensus 41 ~~~~~~TPl~~~~l~~L~~--g--------~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~ 110 (341)
++++++|||++ +++|++ | .+||+| +|++||. +||||+|++.
T Consensus 47 ~~~~~~TPLv~--~~~ls~~~g~~~~~~~~~~v~~K-------~E~~nP~--------------------tGSfKdRgA~ 97 (404)
T cd06447 47 SHGIIESPLLP--IPRMKQALEKLYHQPIKGRLLLK-------ADSHLPI--------------------SGSIKARGGI 97 (404)
T ss_pred cCCccCCCcee--hHHHHHHhccccccCcCceEEEE-------ecCCCCC--------------------CCChHHHHHH
Confidence 45689999999 676654 3 799999 8888881 3556999998
Q ss_pred HHHHH-----HHHcCC---------------------CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCC
Q 019410 111 FLMAD-----AVAQGA---------------------DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDP 164 (341)
Q Consensus 111 ~ll~~-----A~~~g~---------------------~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~ 164 (341)
+++.. +++.|. ++||+ +|+||||++||++|+.+|++|+||||.++|
T Consensus 98 ~~i~~l~~~~a~~~G~l~pg~~~~~~~~~~~~~~~~~~~VV~--aSsGN~G~alA~~a~~~G~~~~IvvP~~~~------ 169 (404)
T cd06447 98 YEVLKHAEKLALEHGLLTLEDDYSKLASEKFRKLFSQYSIAV--GSTGNLGLSIGIMAAALGFKVTVHMSADAK------ 169 (404)
T ss_pred HHHHHHhHHHHHHhCCCCcccchhhhhhhhhhhcccCCEEEE--ECccHHHHHHHHHHHHcCCCEEEEECCCCc------
Confidence 88764 555554 37887 467999999999999999999999999886
Q ss_pred CcchhHHHHHhCCCEEEEECCccccccCcHHHHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCC-
Q 019410 165 GLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTG- 243 (341)
Q Consensus 165 ~~~gn~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~- 243 (341)
..|++.+++|||+|+.++. .|++ . .+.++++.++.+..|++++ +.++....||.|++.||++|+...+.
T Consensus 170 --~~K~~~ira~GAeVv~v~~-~~~~-----a-~~~a~~la~~~~~~~~v~~-~n~~~~iaG~~T~g~EI~eQl~~~~~~ 239 (404)
T cd06447 170 --QWKKDKLRSKGVTVVEYET-DYSK-----A-VEEGRKQAAADPMCYFVDD-ENSRDLFLGYAVAASRLKAQLAELGIK 239 (404)
T ss_pred --HHHHHHHHHCCCEEEEECC-CHHH-----H-HHHHHHHHHHCCCeEeCCC-CCchhHHhhHHHHHHHHHHHhhhccCc
Confidence 4589999999999999985 3543 2 2335555554324566554 44566678999999999999962100
Q ss_pred --CCCCCEEEEcCCchhHHHHHHHHHhcC-CCCCeEEEEeeCCCCccch--H-------h-------HHHHhhcccCC--
Q 019410 244 --GVKFDDIVVACGSGGTIAGLSLGSWLG-TLKAKVHAFSVCDDPDYFY--D-------Y-------TQGLLDGLNAG-- 302 (341)
Q Consensus 244 --g~~~D~Ivv~vGtGGt~aGl~~~~k~~-~~~~rVigVe~~g~~~~~~--~-------~-------i~~l~~~~~~~-- 302 (341)
...||+||+|+|+||+++|+++++|+. .++++||+|++.+.+.... + . ...++++++.+
T Consensus 240 vD~~~Pd~VvvpvG~GGli~GIa~~lK~~~~p~~kVigVeP~~ap~~~~s~~ag~~~~~~~~~~g~~~~TiadGl~~~~p 319 (404)
T cd06447 240 VDAEHPLFVYLPCGVGGAPGGVAFGLKLIFGDNVHCFFAEPTHSPCMLLGMATGLHDKISVQDIGIDNRTAADGLAVGRP 319 (404)
T ss_pred cccCCCCEEEEecCccHHHHHHHHHHHHhcCCCCEEEEEccCCChHHHHHHHcCCCccccccccCCCccchhhhhcCCCc
Confidence 013568999999999999999999986 7899999999988653311 0 0 11244444332
Q ss_pred ---------CCCCceEEeccchHHHHHHHHHH
Q 019410 303 ---------VDSRDIVNIQNVSVYMTFKNILM 325 (341)
Q Consensus 303 ---------~~~~~iv~v~d~~~~~~~~~~~~ 325 (341)
-..|+++.|+|.+++..++.++.
T Consensus 320 ~~~~~~~~~~~vd~~v~Vsd~ei~~a~r~La~ 351 (404)
T cd06447 320 SGLVGKLMEPLLSGIYTVEDDELYRLLAMLKD 351 (404)
T ss_pred chhHHHHHHHhCCcEEEECHHHHHHHHHHHHH
Confidence 13689999999999999998876
No 41
>PRK08638 threonine dehydratase; Validated
Probab=100.00 E-value=7.6e-36 Score=289.61 Aligned_cols=232 Identities=18% Similarity=0.188 Sum_probs=178.8
Q ss_pred ccccCcCCCcccccCCCCCCC--CceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHHHH
Q 019410 39 VFSLGHFPTPIHKWNLPNLPH--NTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMADA 116 (341)
Q Consensus 39 ~~~~~~~~TPl~~~~l~~L~~--g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~~A 116 (341)
++...+++|||++ +++|++ |++||+| +|++|| +||||+|.+.+++..+
T Consensus 20 ~i~~~i~~TPlv~--~~~l~~~~g~~i~~K-------~E~~np---------------------tGS~KdR~a~~~i~~~ 69 (333)
T PRK08638 20 RLAGRIRKTPLPR--SNYLSERCKGEIFLK-------LENMQR---------------------TGSFKIRGAFNKLSSL 69 (333)
T ss_pred HhhCcCcCCCcee--chhhHHhhCCeEEEE-------eccCCc---------------------cCCcHHHHHHHHHHhc
Confidence 6666779999999 787766 7899999 666666 4667999999999886
Q ss_pred HH-cCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCccccccCcHH
Q 019410 117 VA-QGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVT 195 (341)
Q Consensus 117 ~~-~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~~~~ 195 (341)
.+ .+.++||+. |+||||+++|++|+.+|++|+||||+..+ ..|+.+++.|||+|+.++. .+++
T Consensus 70 ~~~~~~~~vv~~--SsGN~g~alA~~aa~~G~~~~iv~p~~~~--------~~k~~~~~~~GA~V~~~~~-~~~~----- 133 (333)
T PRK08638 70 TDAEKRKGVVAC--SAGNHAQGVALSCALLGIDGKVVMPKGAP--------KSKVAATCGYGAEVVLHGD-NFND----- 133 (333)
T ss_pred cHHhcCCeEEEe--CCcHHHHHHHHHHHHcCCCEEEEeCCCCc--------HHHHHHHHHcCCEEEEECc-CHHH-----
Confidence 54 456778875 45999999999999999999999998875 3479999999999999975 3533
Q ss_pred HHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcCCCCCe
Q 019410 196 LTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAK 275 (341)
Q Consensus 196 ~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~~~~~r 275 (341)
..+ .++++.++. +.|+++ ++.|+...+||.+++.||++|+. ++|+||+|+|||||++|++.++|..++++|
T Consensus 134 ~~~-~a~~~a~~~-g~~~~~-~~~~~~~~~g~~t~a~Ei~~q~~------~~d~vv~~vG~Gg~~~Gv~~~lk~~~~~~~ 204 (333)
T PRK08638 134 TIA-KVEEIVEEE-GRTFIP-PYDDPKVIAGQGTIGLEILEDLW------DVDTVIVPIGGGGLIAGIAVALKSINPTIH 204 (333)
T ss_pred HHH-HHHHHHHhc-CCEEcC-cCCCcchhccccHHHHHHHhhcC------CCCEEEEEeChhHHHHHHHHHHHHhCCCCE
Confidence 222 244444432 345443 34578889999999999999984 489999999999999999999999999999
Q ss_pred EEEEeeCCCCccc---------hH-hHHHHhhcccC---C--------CCCCceEEeccchHHHHHHHHHH
Q 019410 276 VHAFSVCDDPDYF---------YD-YTQGLLDGLNA---G--------VDSRDIVNIQNVSVYMTFKNILM 325 (341)
Q Consensus 276 VigVe~~g~~~~~---------~~-~i~~l~~~~~~---~--------~~~~~iv~v~d~~~~~~~~~~~~ 325 (341)
|||||+.+..... .+ ...++.+++.. . -..|+++.|+|.+++...+.++.
T Consensus 205 vigVep~g~~~~~~s~~~g~~~~~~~~~ti~~gl~~~~p~~~~~~~~~~~~d~~v~Vsd~ea~~a~~~l~~ 275 (333)
T PRK08638 205 IIGVQSENVHGMAASFYAGEITTHRTTGTLADGCDVSRPGNLTYEIVRELVDDIVLVSEDEIRNAMKDLIQ 275 (333)
T ss_pred EEEEEECCCchHHHHHHCCCcccCCCCCCeeccccCCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHH
Confidence 9999998864211 01 11123333221 1 13679999999999999988765
No 42
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=100.00 E-value=1.1e-35 Score=293.11 Aligned_cols=224 Identities=19% Similarity=0.255 Sum_probs=178.0
Q ss_pred CcccccCCCCCCC--CceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHHHHHHcCC-Ce
Q 019410 47 TPIHKWNLPNLPH--NTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMADAVAQGA-DC 123 (341)
Q Consensus 47 TPl~~~~l~~L~~--g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~~A~~~g~-~~ 123 (341)
|||++ +++|++ |++||+| +|++++ +||||+|++.+++.++.+++. ++
T Consensus 1 TPl~~--~~~ls~~~g~~i~~K--------------------------~E~~~p--tgS~K~R~a~~~i~~~~~~~~~~~ 50 (380)
T TIGR01127 1 TPLIY--STTLSDITGSEVYLK--------------------------LENLQK--TGSFKIRGALNKIANLSEDQRQRG 50 (380)
T ss_pred CCcee--hHHHHHHhCCeEEEE--------------------------ecCCCC--CCCcHHHHHHHHHHhcchhccCCE
Confidence 89999 788876 8899999 555542 577899999999999887774 56
Q ss_pred EEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCccccccCcHHHHHHHHHH
Q 019410 124 IITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEK 203 (341)
Q Consensus 124 vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~a~~ 203 (341)
||++ |+||||+++|++|+++|++|++|||..+| ..|++.++.|||+|++++. .|+++ .+.+++
T Consensus 51 vv~a--SsGN~g~alA~~a~~~G~~~~iv~p~~~~--------~~k~~~~~~~GA~V~~~~~-~~~~a------~~~a~~ 113 (380)
T TIGR01127 51 VVAA--SAGNHAQGVAYAAKKFGIKAVIVMPESAP--------PSKVKATKSYGAEVILHGD-DYDEA------YAFATS 113 (380)
T ss_pred EEEE--CCCHHHHHHHHHHHHcCCCEEEEEcCCCc--------HHHHHHHHHCCCEEEEECC-CHHHH------HHHHHH
Confidence 8875 55999999999999999999999999875 3579999999999999975 35432 234555
Q ss_pred HHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcCCCCCeEEEEeeCC
Q 019410 204 LLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCD 283 (341)
Q Consensus 204 l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~~~~~rVigVe~~g 283 (341)
++++. +.++++ ++.|+....||.|++.||++|++ .+|+||+|+|||||++|++.++|...|++|||||++.+
T Consensus 114 ~~~~~-~~~~~~-~~~~~~~~~g~~t~~~Ei~~q~~------~~D~vv~~vG~Gg~~aGi~~~~k~~~p~~kvigVe~~~ 185 (380)
T TIGR01127 114 LAEEE-GRVFVH-PFDDEFVMAGQGTIGLEIMEDIP------DVDTVIVPVGGGGLISGVASAAKQINPNVKVIGVEAEG 185 (380)
T ss_pred HHHhc-CCEecC-CCCChhhhhhhHHHHHHHHHhCC------CCCEEEEEeChHHHHHHHHHHHHHhCCCCEEEEEEECC
Confidence 65543 345544 34578888999999999999985 59999999999999999999999999999999999998
Q ss_pred CCccc----------hHhHHHHhhcccCC-----------CCCCceEEeccchHHHHHHHHHH
Q 019410 284 DPDYF----------YDYTQGLLDGLNAG-----------VDSRDIVNIQNVSVYMTFKNILM 325 (341)
Q Consensus 284 ~~~~~----------~~~i~~l~~~~~~~-----------~~~~~iv~v~d~~~~~~~~~~~~ 325 (341)
++... ...+.+++++++.. -..|+++.|+|.+++..++.++.
T Consensus 186 ~~~~~~~~~~g~~~~~~~~~~~a~g~~~~~~~~~~~~~~~~~vd~~v~V~d~e~~~a~~~l~~ 248 (380)
T TIGR01127 186 APSMYESLREGKIKAVESVRTIADGIAVKKPGDLTFNIIKEYVDDVVTVDEEEIANAIYLLLE 248 (380)
T ss_pred ChHHHHHHHcCCceecCCCCCeecchhCCCccHHHHHHHHHhCCEEEEECHHHHHHHHHHHHH
Confidence 75432 11233455555421 13689999999999999887764
No 43
>PRK07048 serine/threonine dehydratase; Validated
Probab=100.00 E-value=2e-35 Score=285.27 Aligned_cols=233 Identities=17% Similarity=0.191 Sum_probs=179.9
Q ss_pred ccccCcCCCcccccCCCCCCC--CceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHHHH
Q 019410 39 VFSLGHFPTPIHKWNLPNLPH--NTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMADA 116 (341)
Q Consensus 39 ~~~~~~~~TPl~~~~l~~L~~--g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~~A 116 (341)
++...+++|||++ +++|++ |++||+| +|++++ +||||+|.+.+++.++
T Consensus 17 ~i~~~~~~TPl~~--~~~l~~~~g~~i~~K--------------------------~E~~np--tGS~K~R~a~~~i~~~ 66 (321)
T PRK07048 17 RLAGVAHRTPVLT--SRTADARTGAQVFFK--------------------------CENFQR--MGAFKFRGAYNALSQF 66 (321)
T ss_pred HhhCCCCCCCCcc--chhhHHhcCCeEEEE--------------------------eccCCC--CCCeeHHHHHHHHHhh
Confidence 6667789999999 787765 7899999 555542 5778999999999887
Q ss_pred H-HcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCccccccCcHH
Q 019410 117 V-AQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVT 195 (341)
Q Consensus 117 ~-~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~~~~ 195 (341)
. +.+.++||++ |+||||+|+|++|+.+|++|++|||...+ ..|+..++.|||+|+.++.. +++
T Consensus 67 ~~~~~~~~vv~a--SsGN~g~alA~~a~~~G~~~~vvvp~~~~--------~~k~~~~~~~GAeV~~~~~~-~~~----- 130 (321)
T PRK07048 67 SPEQRRAGVVTF--SSGNHAQAIALSARLLGIPATIVMPQDAP--------AAKVAATRGYGGEVVTYDRY-TED----- 130 (321)
T ss_pred hHhhcCCcEEEe--CCCHHHHHHHHHHHHcCCCEEEEECCCCC--------HHHHHHHHHCCCEEEEECCC-HHH-----
Confidence 7 3456788875 45999999999999999999999998875 35799999999999999853 432
Q ss_pred HHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcCCCCCe
Q 019410 196 LTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAK 275 (341)
Q Consensus 196 ~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~~~~~r 275 (341)
. .+.+++++++. +.|+++ ++.|+....||.+++.||++|++ .||+||+|+|||||++|++.++|+.+++++
T Consensus 131 ~-~~~a~~l~~~~-g~~~~~-~~~~~~~~~g~~t~~~EI~~q~~------~~D~vv~~vGtGG~~~Gi~~~~k~~~~~~~ 201 (321)
T PRK07048 131 R-EEIGRRLAEER-GLTLIP-PYDHPHVIAGQGTAAKELFEEVG------PLDALFVCLGGGGLLSGCALAARALSPGCK 201 (321)
T ss_pred H-HHHHHHHHHhc-CCEEEC-CCCCcchhhccchHHHHHHhhcC------CCCEEEEecChhHHHHHHHHHHHHhCCCCE
Confidence 1 23455666553 345443 33467777899999999999985 599999999999999999999999999999
Q ss_pred EEEEeeCCCCccchH----------hHHHHhhcccC-C----------CCCCceEEeccchHHHHHHHHHHH
Q 019410 276 VHAFSVCDDPDYFYD----------YTQGLLDGLNA-G----------VDSRDIVNIQNVSVYMTFKNILMN 326 (341)
Q Consensus 276 VigVe~~g~~~~~~~----------~i~~l~~~~~~-~----------~~~~~iv~v~d~~~~~~~~~~~~~ 326 (341)
||||++++++..... ....++++... . -..|+++.|+|.+++..++.++..
T Consensus 202 vigvep~~~~~~~~s~~~g~~~~~~~~~tia~g~~~~~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~ 273 (321)
T PRK07048 202 VYGVEPEAGNDGQQSFRSGEIVHIDTPRTIADGAQTQHLGNYTFPIIRRLVDDIVTVSDAELVDAMRFFAER 273 (321)
T ss_pred EEEEeeCCChhHHHHHHcCCcccCCCCCCcccccccCCccHHHHHHHHHhCCceEEECHHHHHHHHHHHHHh
Confidence 999999987532111 11223333221 1 136799999999999999888643
No 44
>PRK06721 threonine synthase; Reviewed
Probab=100.00 E-value=4.1e-35 Score=286.50 Aligned_cols=233 Identities=19% Similarity=0.198 Sum_probs=177.9
Q ss_pred ccccCcCCCcccccCCCCCCC--CceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHHHH
Q 019410 39 VFSLGHFPTPIHKWNLPNLPH--NTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMADA 116 (341)
Q Consensus 39 ~~~~~~~~TPl~~~~l~~L~~--g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~~A 116 (341)
++++.+++|||++ +++|++ |++||+| +|++|| +||||+|++.+++.+|
T Consensus 21 ~~~l~~G~TPl~~--l~~l~~~~g~~i~~K-------~E~~np---------------------tGS~KdR~a~~~i~~a 70 (352)
T PRK06721 21 DVSLMEGNTPLIP--LLNISKQLGIQLYGK-------YEGANP---------------------TGSFKDRGMVMAVAKA 70 (352)
T ss_pred ccccCcCCCCeeE--chhhHHHhCCeEEEE-------ecCCCC---------------------ccchHHHHHHHHHHHH
Confidence 6788899999999 788776 7899999 444444 5778999999999999
Q ss_pred HHcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCccccccCcHHH
Q 019410 117 VAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTL 196 (341)
Q Consensus 117 ~~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~~~~~ 196 (341)
.++|.++||++ |+||||+|+|++|+.+|++|+||||.... ...|+++++.+||+|+.++. .|++ .
T Consensus 71 ~~~g~~~vV~a--SsGN~G~alA~~aa~~G~~~~vvvp~~~~-------~~~k~~~~~~~GA~V~~~~~-~~~~-----~ 135 (352)
T PRK06721 71 KEEGSEAIICA--STGNTSASAAAYAARLGMKCIIVIPEGKI-------AHGKLAQAVAYGAEIISIEG-NFDD-----A 135 (352)
T ss_pred HHCCCCEEEEE--CCcHHHHHHHHHHHHCCCcEEEEECCCCC-------CHHHHHHHHHcCCEEEEECC-CHHH-----H
Confidence 99999999985 67999999999999999999999998641 03578999999999999985 3533 2
Q ss_pred HHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHH----HHHhcCC-
Q 019410 197 TNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLS----LGSWLGT- 271 (341)
Q Consensus 197 ~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~----~~~k~~~- 271 (341)
.+.++++.++. ..+++ +..|+...+||.+++.||++|+. ..+|+||+|+||||+++|++ .++|..+
T Consensus 136 -~~~a~~~~~~~-~~~~~--~~~n~~~~~G~~t~~~Ei~eq~~-----~~~D~ivv~vG~GG~l~G~~~G~~~~lk~~~~ 206 (352)
T PRK06721 136 -LKAVRNIAAEE-PITLV--NSVNPYRIEGQKTAAFEICDQLQ-----RAPDVLAIPVGNAGNITAYWKGFCEYEKEKGY 206 (352)
T ss_pred -HHHHHHHHHhC-Cceec--cCCCchhhhhhhhHHHHHHHHhC-----CCCCEEEEeCCchHHHHHHHHHHHHHHHhcCC
Confidence 22344455432 23444 34688899999999999999986 36999999999999999854 4455554
Q ss_pred CCCeEEEEeeCCCCccchHh----HHHHhhcccC-------------CCCCCceEEeccchHHHHHHHHHH
Q 019410 272 LKAKVHAFSVCDDPDYFYDY----TQGLLDGLNA-------------GVDSRDIVNIQNVSVYMTFKNILM 325 (341)
Q Consensus 272 ~~~rVigVe~~g~~~~~~~~----i~~l~~~~~~-------------~~~~~~iv~v~d~~~~~~~~~~~~ 325 (341)
+++|||||++++.......+ ...+.+++.. ....++++.|.|.+++..++.++.
T Consensus 207 ~~~~vigVep~~~~~~~~g~~~~~~~tia~~l~~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~la~ 277 (352)
T PRK06721 207 KKPRIHGFEAEGAAAIVKGHVIDEPETIATAIRIGNPASWSYAVEAAEQSHGEIDMVSDEEILHAYRLLAK 277 (352)
T ss_pred CCCeEEEEecCCCChHhhCCcCCCCCceeeccccCCCCCHHHHHHHHHhcCCEEEEECHHHHHHHHHHHHH
Confidence 89999999998875422111 1112222221 013568999999999999888764
No 45
>PRK07591 threonine synthase; Validated
Probab=100.00 E-value=2.6e-35 Score=294.13 Aligned_cols=235 Identities=17% Similarity=0.133 Sum_probs=182.8
Q ss_pred ccccCcCCCcccccCCCCCCC--C-ceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHHH
Q 019410 39 VFSLGHFPTPIHKWNLPNLPH--N-TEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMAD 115 (341)
Q Consensus 39 ~~~~~~~~TPl~~~~l~~L~~--g-~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~~ 115 (341)
+++|+.++|||++ +++|++ | .+||+| +|+.|| +||||+|++.+++..
T Consensus 82 ~v~l~eG~TPLv~--~~~l~~~lG~~~l~~K-------~E~~nP---------------------tGSfKdRga~~~v~~ 131 (421)
T PRK07591 82 PVDLGPGFTPLVK--ADRLARELGLKNLYIK-------DDSVNP---------------------THSFKDRVVSVALTA 131 (421)
T ss_pred CCcCCCCCCcceE--hHHHHHHhCCCcEEEE-------eCCCCC---------------------ccChHHHHHHHHHHH
Confidence 6899999999999 788866 6 499999 555555 577899999999999
Q ss_pred HHHcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCccccccCcHH
Q 019410 116 AVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVT 195 (341)
Q Consensus 116 A~~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~~~~ 195 (341)
|.+.|.++||+ +|+||||+|+|++|+++|++|+||||...+ .+|+.++++|||+|+.++.. |+++
T Consensus 132 A~~~g~~~vv~--aSsGN~g~alA~~aa~~Gl~~~I~vP~~~~--------~~k~~~~~~~GA~Vi~v~g~-~d~a---- 196 (421)
T PRK07591 132 ARELGFTTVAC--ASTGNLANSVAAHAARAGLDSCVFIPADLE--------AGKIVGTLVYGPTLVAVDGN-YDDV---- 196 (421)
T ss_pred HHHcCCCEEEE--eCCCHHHHHHHHHHHHcCCCEEEEEcCCCC--------HHHHHHHHHcCCEEEEECCC-HHHH----
Confidence 99999999986 467999999999999999999999998764 45899999999999999863 6432
Q ss_pred HHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcC-----
Q 019410 196 LTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLG----- 270 (341)
Q Consensus 196 ~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~----- 270 (341)
.++++++.++.+..|++. ...||..++|+.|++.||++|++. ..||+||+|+|+||+++|++.+|+++
T Consensus 197 --~~~a~~~~~~~~~~~~~n-~~~~p~~ieG~~Tia~Ei~eQl~~----~~pD~iv~pvG~Gg~~~Gv~~g~kel~~~g~ 269 (421)
T PRK07591 197 --NRLCSELANEHEGWGFVN-INLRPYYAEGSKTLGYEVAEQLGW----RLPDQVVAPLASGSLLTKIDKGFQELIKVGL 269 (421)
T ss_pred --HHHHHHHHHhcCCEEEec-CCCCcccccchHHHHHHHHHHcCC----CCCCEEEEeCCchHHHHHHHHHHHHHHhcCC
Confidence 233444444322345554 345788889999999999999862 34999999999999999999999986
Q ss_pred --CCCCeEEEEeeCCCCccchH-----------hHHHHhhcccCCCC-------------CCceEEeccchHHHHHHHHH
Q 019410 271 --TLKAKVHAFSVCDDPDYFYD-----------YTQGLLDGLNAGVD-------------SRDIVNIQNVSVYMTFKNIL 324 (341)
Q Consensus 271 --~~~~rVigVe~~g~~~~~~~-----------~i~~l~~~~~~~~~-------------~~~iv~v~d~~~~~~~~~~~ 324 (341)
++.+|||+|++++....... ..+.+++++..... ..+++.|+|.++...++.++
T Consensus 270 i~~~~prii~Vq~~g~~~~~~~~~~g~~~~~~~~~~tia~~l~~~~p~~~~~~~~~i~~~~g~~v~Vsd~ei~~a~~~la 349 (421)
T PRK07591 270 VEDKPVRVFGAQAEGCSPIAQAFKEGRDVVKPVKPNTIAKSLAIGNPADGPYALDIARRTGGAIEDVTDEEIIEGIKLLA 349 (421)
T ss_pred ccCCCceEEEEecCCCCHHHHHHHcCCCcccCCCCCchhhheecCCCCCcHHHHHHHHHhCCEEEEECHHHHHHHHHHHH
Confidence 57899999999985432210 12234444422111 23699999999999988877
Q ss_pred H
Q 019410 325 M 325 (341)
Q Consensus 325 ~ 325 (341)
.
T Consensus 350 ~ 350 (421)
T PRK07591 350 R 350 (421)
T ss_pred h
Confidence 5
No 46
>PRK07409 threonine synthase; Validated
Probab=100.00 E-value=2.8e-35 Score=287.79 Aligned_cols=232 Identities=19% Similarity=0.231 Sum_probs=179.7
Q ss_pred ccccCcCCCcccccCCCCCCC--CceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHHHH
Q 019410 39 VFSLGHFPTPIHKWNLPNLPH--NTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMADA 116 (341)
Q Consensus 39 ~~~~~~~~TPl~~~~l~~L~~--g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~~A 116 (341)
++++++++|||++ +++|++ |++||+| +|++|| +||||+|++.+++..+
T Consensus 24 ~~~l~~g~TPl~~--~~~l~~~~g~~i~~K-------~E~~np---------------------tGSfKdR~a~~~l~~a 73 (353)
T PRK07409 24 VVTLGEGNTPLIP--APNLSELLGVEVYVK-------YEGLNP---------------------TGSFKDRGMTMAVTKA 73 (353)
T ss_pred cccCCCCCCCEEE--chhhHHHhCCeEEEE-------ecCCCC---------------------ccchHHHHHHHHHHHH
Confidence 6899999999999 777766 7899999 555555 5778999999999999
Q ss_pred HHcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCC-CCcCCCCCcchhHHHHHhCCCEEEEECCccccccCcHH
Q 019410 117 VAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSK-VLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVT 195 (341)
Q Consensus 117 ~~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~-~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~~~~ 195 (341)
+++|.++||++ |+||||+++|++|+.+|++|+||||... + ..|++.++.|||+|+.++. .|++.
T Consensus 74 ~~~g~~~iv~a--SsGN~g~alA~~a~~~G~~~~ivvP~~~~~--------~~k~~~~~~~GA~Vi~~~~-~~~~~---- 138 (353)
T PRK07409 74 KEEGAKAVICA--STGNTSASAAAYAARAGLKAFVLIPEGKIA--------LGKLAQAVMYGAEIIQIDG-NFDDA---- 138 (353)
T ss_pred HHCCCCEEEEE--CCcHHHHHHHHHHHHcCCCEEEEEcCCCCc--------hhhHHHHHhcCCEEEEECC-CHHHH----
Confidence 99999999974 7799999999999999999999999863 3 3478999999999999986 35432
Q ss_pred HHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcCCC---
Q 019410 196 LTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTL--- 272 (341)
Q Consensus 196 ~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~~~--- 272 (341)
.+.++++.++. ..++++ ..|+.+++||.+++.||++|+. ..+|+||+|+|||||++|++.+++...+
T Consensus 139 --~~~a~~l~~~~-~~~~~~--~~n~~~~~g~~t~~~EI~~q~~-----~~~d~iv~~vG~GG~~~Gi~~g~~~~~~~~~ 208 (353)
T PRK07409 139 --LEIVRELAEKY-PVTLVN--SVNPYRIEGQKTAAFEIVDALG-----DAPDYHCIPVGNAGNITAYWKGYKEYHQDGK 208 (353)
T ss_pred --HHHHHHHHHhc-CceecC--CCCchhhhhHHHHHHHHHHHhC-----CCCCEEEEeCCChHHHHHHHHHHHHHHHcCC
Confidence 23344555443 234443 3589999999999999999985 3699999999999999999999987532
Q ss_pred ---CCeEEEEeeCCCCccch-H---hHHHHhhcccCC---C----------CCCceEEeccchHHHHHHHHHH
Q 019410 273 ---KAKVHAFSVCDDPDYFY-D---YTQGLLDGLNAG---V----------DSRDIVNIQNVSVYMTFKNILM 325 (341)
Q Consensus 273 ---~~rVigVe~~g~~~~~~-~---~i~~l~~~~~~~---~----------~~~~iv~v~d~~~~~~~~~~~~ 325 (341)
.+||||||+.++..... + ....+.+++..+ . ..++++.|+|.+++..++.++.
T Consensus 209 ~~~~~kvigVep~g~~~~~~g~~~~~~~ti~~~l~~~~~~~~~~~~~~~~~~~~~~v~Vsd~e~~~a~~~l~~ 281 (353)
T PRK07409 209 STKLPRMMGFQAAGAAPIVRGEPVKNPETIATAIRIGNPASWDKAVAARDESGGLIDAVTDEEILEAYRLLAR 281 (353)
T ss_pred ccCCCeEEEEecCCCChHhhCCcCCCCcceeeeeecCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHH
Confidence 58999999988643221 1 112233333211 0 1236899999999999888764
No 47
>PRK08639 threonine dehydratase; Validated
Probab=100.00 E-value=2.9e-35 Score=293.81 Aligned_cols=235 Identities=18% Similarity=0.201 Sum_probs=178.7
Q ss_pred ccccCcCCCcccccCCCCCCC--CceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHHHH
Q 019410 39 VFSLGHFPTPIHKWNLPNLPH--NTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMADA 116 (341)
Q Consensus 39 ~~~~~~~~TPl~~~~l~~L~~--g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~~A 116 (341)
++...+++|||++ +++|++ |++||+| +|++++ +||||+|++.+++..+
T Consensus 18 ~i~~~i~~TPl~~--~~~ls~~~g~~l~~K--------------------------~E~~~p--tGSfK~RgA~~~i~~l 67 (420)
T PRK08639 18 RLKDVVPETPLQR--NDYLSEKYGANVYLK--------------------------REDLQP--VRSYKLRGAYNAISQL 67 (420)
T ss_pred HHhCcCcCCCccc--hHHHHHHhCCEEEEE--------------------------ecCCCC--CCCcHHHHHHHHHHhC
Confidence 6777889999999 777776 8899999 666653 6888999999998874
Q ss_pred H-HcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEE---EECCccccccC
Q 019410 117 V-AQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIE---LISKEEYSKIG 192 (341)
Q Consensus 117 ~-~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~---~v~~~~~~~~~ 192 (341)
. +.+.++||++ |+||||+++|++|+++|++|+||||..+| ..|+..++.|||+|+ .++. .|++
T Consensus 68 ~~~~~~~~Vv~a--SsGN~g~alA~~a~~~G~~~~IvmP~~~~--------~~k~~~~r~~GA~vv~v~~~g~-~~~~-- 134 (420)
T PRK08639 68 SDEELAAGVVCA--SAGNHAQGVAYACRHLGIPGVIFMPVTTP--------QQKIDQVRFFGGEFVEIVLVGD-TFDD-- 134 (420)
T ss_pred CHHhhCCEEEEE--CccHHHHHHHHHHHHcCCCEEEEECCCCh--------HHHHHHHHHcCCCeeEEEEeCc-CHHH--
Confidence 3 3345778874 56999999999999999999999998875 347899999999743 3332 3533
Q ss_pred cHHHHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcCCC
Q 019410 193 SVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTL 272 (341)
Q Consensus 193 ~~~~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~~~ 272 (341)
..+ .+.++.++. +.++++ ++.|+....|+.|++.||++|++. . ..+|+||+|+|||||++|++.++|..+|
T Consensus 135 ---a~~-~a~~~a~~~-g~~~~~-~~~~~~~~~G~~tig~EI~eq~~~--~-~~~D~vv~~vG~GG~~aGva~~~k~~~p 205 (420)
T PRK08639 135 ---SAA-AAQEYAEET-GATFIP-PFDDPDVIAGQGTVAVEILEQLEK--E-GSPDYVFVPVGGGGLISGVTTYLKERSP 205 (420)
T ss_pred ---HHH-HHHHHHHhc-CCcccC-CCCChhHhcchhHHHHHHHHhccc--c-CCCCEEEEecChhHHHHHHHHHHHHhCC
Confidence 222 244454432 244443 345788889999999999999962 0 0299999999999999999999999999
Q ss_pred CCeEEEEeeCCCCccc----------hHhHHHHhhcccCCC-----------CCCceEEeccchHHHHHHHHHH
Q 019410 273 KAKVHAFSVCDDPDYF----------YDYTQGLLDGLNAGV-----------DSRDIVNIQNVSVYMTFKNILM 325 (341)
Q Consensus 273 ~~rVigVe~~g~~~~~----------~~~i~~l~~~~~~~~-----------~~~~iv~v~d~~~~~~~~~~~~ 325 (341)
++|||||++.+++... .+.+..++++++... ..|+++.|+|.+++.+++.++.
T Consensus 206 ~~~vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~gi~v~~~g~~~~~~~~~~vd~~v~V~d~ei~~a~~~l~~ 279 (420)
T PRK08639 206 KTKIIGVEPAGAASMKAALEAGKPVTLEKIDKFVDGAAVARVGDLTFEILKDVVDDVVLVPEGAVCTTILELYN 279 (420)
T ss_pred CCEEEEEEECCCCcHHHHHhCCCceeCCCCCCeecccccCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHH
Confidence 9999999999876532 112334455554311 3689999999999999988764
No 48
>PRK06815 hypothetical protein; Provisional
Probab=100.00 E-value=7.8e-35 Score=280.77 Aligned_cols=232 Identities=19% Similarity=0.190 Sum_probs=177.6
Q ss_pred ccccCcCCCcccccCCCCCCC--CceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHHHH
Q 019410 39 VFSLGHFPTPIHKWNLPNLPH--NTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMADA 116 (341)
Q Consensus 39 ~~~~~~~~TPl~~~~l~~L~~--g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~~A 116 (341)
++...+++|||++ +++|++ |++||+| +|..|| +||||+|.+.+++..+
T Consensus 13 ~~~~~i~~TPLv~--~~~l~~~~g~~i~~K-------~E~~np---------------------tgS~KdR~a~~~~~~l 62 (317)
T PRK06815 13 RLRPQVRVTPLEH--SPLLSQHTGCEVYLK-------CEHLQH---------------------TGSFKFRGASNKLRLL 62 (317)
T ss_pred HhhCCCCCCCccc--cHhHHHhhCCeEEEE-------ecCCCC---------------------CCCcHHHHHHHHHHhc
Confidence 5556678999999 788776 7899999 444444 5777999998888765
Q ss_pred HHc-CCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCccccccCcHH
Q 019410 117 VAQ-GADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVT 195 (341)
Q Consensus 117 ~~~-g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~~~~ 195 (341)
.+. +.++||+ +|+||||+|+|++|+++|++|+||||...+ ..|+..++.+||+|+.++.+ |++.
T Consensus 63 ~~~~~~~~vv~--aSsGN~g~alA~~a~~~G~~~~i~~p~~~~--------~~k~~~~~~~GA~V~~~~~~-~~~~---- 127 (317)
T PRK06815 63 NEAQRQQGVIT--ASSGNHGQGVALAAKLAGIPVTVYAPEQAS--------AIKLDAIRALGAEVRLYGGD-ALNA---- 127 (317)
T ss_pred chhhcCceEEE--ECCChHHHHHHHHHHHhCCCEEEEECCCCC--------HHHHHHHHHCCCEEEEECCC-HHHH----
Confidence 322 3466887 467999999999999999999999998874 35899999999999999863 5331
Q ss_pred HHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcCCCCCe
Q 019410 196 LTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAK 275 (341)
Q Consensus 196 ~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~~~~~r 275 (341)
...++++.++.+..|+.|. .|+....||.+++.||++|++ .+|+||+|+|||||++|++.+++..+++++
T Consensus 128 --~~~a~~~~~~~~~~~~~~~--~~~~~~~g~~t~a~Ei~~q~~------~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~ 197 (317)
T PRK06815 128 --ELAARRAAEQQGKVYISPY--NDPQVIAGQGTIGMELVEQQP------DLDAVFVAVGGGGLISGIATYLKTLSPKTE 197 (317)
T ss_pred --HHHHHHHHHhcCCEEecCC--CChhhhcchhHHHHHHHHhcC------CCCEEEEECcHHHHHHHHHHHHHHhCCCCE
Confidence 2334555554323344443 467777899999999999985 489999999999999999999999999999
Q ss_pred EEEEeeCCCCccchH----h------HHHHhhccc----CC--------CCCCceEEeccchHHHHHHHHHH
Q 019410 276 VHAFSVCDDPDYFYD----Y------TQGLLDGLN----AG--------VDSRDIVNIQNVSVYMTFKNILM 325 (341)
Q Consensus 276 VigVe~~g~~~~~~~----~------i~~l~~~~~----~~--------~~~~~iv~v~d~~~~~~~~~~~~ 325 (341)
||||++.+....... + ...+.++.. ++ -..++++.|.|.+++.+++.++.
T Consensus 198 vigVep~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~la~ 269 (317)
T PRK06815 198 IIGCWPANSPSLYTSLEAGEIVEVAEQPTLSDGTAGGVEPGAITFPLCQQLIDQKVLVSEEEIKEAMRLIAE 269 (317)
T ss_pred EEEEEeCCCCcHHHHHHCCCcccCCCCCChhhhhccCCcccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHH
Confidence 999999987654221 1 111333332 11 13679999999999999988876
No 49
>PRK07334 threonine dehydratase; Provisional
Probab=100.00 E-value=8.3e-35 Score=289.12 Aligned_cols=233 Identities=17% Similarity=0.173 Sum_probs=181.8
Q ss_pred ccccCcCCCcccccCCCCCCC--CceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHHHH
Q 019410 39 VFSLGHFPTPIHKWNLPNLPH--NTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMADA 116 (341)
Q Consensus 39 ~~~~~~~~TPl~~~~l~~L~~--g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~~A 116 (341)
++...+++|||++ +++|++ |.+||+| +|..|| +||||+|.+.+++..+
T Consensus 16 ~i~~~i~~TPl~~--~~~l~~~~g~~l~~K-------~E~~np---------------------tGS~KdR~a~~~i~~~ 65 (403)
T PRK07334 16 RLAGQVLRTPCVH--SRTLSQITGAEVWLK-------FENLQF---------------------TASFKERGALNKLLLL 65 (403)
T ss_pred HHhCCCCCCCccc--hHHHHHhhCCeEEEE-------eccCCC---------------------CCCchHHHHHHHHHhc
Confidence 5666789999999 787776 7899999 555555 4667999999998876
Q ss_pred HH-cCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCccccccCcHH
Q 019410 117 VA-QGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVT 195 (341)
Q Consensus 117 ~~-~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~~~~ 195 (341)
.+ .+.++||++ |+||||+|+|++|+++|++|+||||...+ ..|+.++++|||+|+.++. .|++
T Consensus 66 ~~~~~~~~vv~a--SsGN~g~alA~~a~~~G~~~~iv~p~~~~--------~~k~~~~~~~GA~v~~~~~-~~~~----- 129 (403)
T PRK07334 66 TEEERARGVIAM--SAGNHAQGVAYHAQRLGIPATIVMPRFTP--------TVKVERTRGFGAEVVLHGE-TLDE----- 129 (403)
T ss_pred CHHHhCCcEEEE--CCcHHHHHHHHHHHHcCCCEEEEECCCCC--------HHHHHHHHHcCCEEEEECc-CHHH-----
Confidence 43 345668874 56999999999999999999999999875 3579999999999999975 3533
Q ss_pred HHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcCCCCCe
Q 019410 196 LTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAK 275 (341)
Q Consensus 196 ~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~~~~~r 275 (341)
. .+.+++++++. +.|++ .++.|+....||.+++.||++|++ .+|+||+|+|||||++|++.++|..++++|
T Consensus 130 ~-~~~a~~l~~~~-~~~~~-~~~~~~~~~~g~~t~~~Ei~~q~~------~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~ 200 (403)
T PRK07334 130 A-RAHARELAEEE-GLTFV-HPYDDPAVIAGQGTVALEMLEDAP------DLDTLVVPIGGGGLISGMATAAKALKPDIE 200 (403)
T ss_pred H-HHHHHHHHHhc-CCEec-CCCCCHHHHHhHHHHHHHHHhcCC------CCCEEEEecCHHHHHHHHHHHHHHhCCCCE
Confidence 2 23455666543 34544 345578889999999999999985 589999999999999999999999999999
Q ss_pred EEEEeeCCCCccchHh--------HHHHhhcccC---C--------CCCCceEEeccchHHHHHHHHHHH
Q 019410 276 VHAFSVCDDPDYFYDY--------TQGLLDGLNA---G--------VDSRDIVNIQNVSVYMTFKNILMN 326 (341)
Q Consensus 276 VigVe~~g~~~~~~~~--------i~~l~~~~~~---~--------~~~~~iv~v~d~~~~~~~~~~~~~ 326 (341)
|+||++++++...... ...+.++++. . -..|++|.|.|.+++.+++.++..
T Consensus 201 vi~ve~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~ 270 (403)
T PRK07334 201 IIGVQTELYPSMYAAIKGVALPCGGSTIAEGIAVKQPGQLTLEIVRRLVDDILLVSEADIEQAVSLLLEI 270 (403)
T ss_pred EEEEEECCCchHHHHHhCCCccCCCCCccceecCCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHh
Confidence 9999999875532110 0123444442 1 136899999999999999988753
No 50
>PRK08197 threonine synthase; Validated
Probab=100.00 E-value=1.1e-34 Score=287.45 Aligned_cols=235 Identities=17% Similarity=0.122 Sum_probs=181.2
Q ss_pred cccccCcCCCcccccCCCCCCC--C-ceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHH
Q 019410 38 HVFSLGHFPTPIHKWNLPNLPH--N-TEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMA 114 (341)
Q Consensus 38 ~~~~~~~~~TPl~~~~l~~L~~--g-~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~ 114 (341)
++++++.++|||++ +++|++ | .+||+| +|++|| +||||+|++.+++.
T Consensus 71 ~~vslgeG~TPL~~--~~~l~~~~G~~~l~~K-------~E~~nP---------------------tGSfKdRga~~~i~ 120 (394)
T PRK08197 71 HIVSLGEGMTPLLP--LPRLGKALGIGRLWVK-------DEGLNP---------------------TGSFKARGLAVGVS 120 (394)
T ss_pred CCCccCcCCCCceE--hHHHHHHhCCCcEEEE-------eCCCCC---------------------CcCcHHhHHHHHHH
Confidence 36899999999999 777765 6 499999 665555 57779999999999
Q ss_pred HHHHcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCccccccCcH
Q 019410 115 DAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSV 194 (341)
Q Consensus 115 ~A~~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~~~ 194 (341)
.|.+.|.++||+ +|+||||+|+|++|+++|++|+||||.+.+ ..|+.++++|||+|+.++. .|++.
T Consensus 121 ~a~~~g~~~vv~--aSsGN~g~alA~~aa~~G~~~~v~vp~~~~--------~~k~~~~~~~GA~Vi~v~~-~~~~~--- 186 (394)
T PRK08197 121 RAKELGVKHLAM--PTNGNAGAAWAAYAARAGIRATIFMPADAP--------EITRLECALAGAELYLVDG-LISDA--- 186 (394)
T ss_pred HHHHcCCCEEEE--eCCcHHHHHHHHHHHHcCCcEEEEEcCCCC--------HHHHHHHHHcCCEEEEECC-CHHHH---
Confidence 999999999997 467999999999999999999999998875 3579999999999999986 35331
Q ss_pred HHHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcC----
Q 019410 195 TLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLG---- 270 (341)
Q Consensus 195 ~~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~---- 270 (341)
.+.++++.++. ..|++ .++.||..++|+.|++.||.+|++. ..||+||+|+|+||+++|++.+|+++
T Consensus 187 ---~~~a~~~~~~~-g~~~~-~~~~np~~ieG~~t~a~Ei~eQl~~----~~pD~vvvpvG~Gg~~~Gi~~~~k~~~~~g 257 (394)
T PRK08197 187 ---GKIVAEAVAEY-GWFDV-STLKEPYRIEGKKTMGLELAEQLGW----RLPDVILYPTGGGVGLIGIWKAFDELEALG 257 (394)
T ss_pred ---HHHHHHHHHhc-Ccccc-cCCCCccchhcHHHHHHHHHHHcCC----CCCCEEEEeCCChHHHHHHHHHHHHHHHcC
Confidence 12333443332 34444 4456899999999999999999962 35999999999999999999999985
Q ss_pred ---CCCCeEEEEeeCCCCccchH------------hHHHHhhcccCC--C-----------CCCceEEeccchHHHHHHH
Q 019410 271 ---TLKAKVHAFSVCDDPDYFYD------------YTQGLLDGLNAG--V-----------DSRDIVNIQNVSVYMTFKN 322 (341)
Q Consensus 271 ---~~~~rVigVe~~g~~~~~~~------------~i~~l~~~~~~~--~-----------~~~~iv~v~d~~~~~~~~~ 322 (341)
++.+|||+|++.+....... ....+++++... . ...+++.|.|.+++..++.
T Consensus 258 ~~~~~~p~ii~Vq~~g~~~l~~~~~~g~~~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~~~~g~~v~V~d~e~~~a~~~ 337 (394)
T PRK08197 258 WIGGKRPRLVAVQAEGCAPIVKAWEEGKEESEFWEDAHTVAFGIRVPKALGDFLVLDAVRETGGCAIAVSDDAILAAQRE 337 (394)
T ss_pred CcCCCCCeEEEEEeCCCCHHHHHHHcCCCccccCCCCCceehhhhCCCCCCHHHHHHHHHHhCCEEEEeCHHHHHHHHHH
Confidence 47899999999887442210 011223332211 1 1234689999999999888
Q ss_pred HHH
Q 019410 323 ILM 325 (341)
Q Consensus 323 ~~~ 325 (341)
++.
T Consensus 338 la~ 340 (394)
T PRK08197 338 LAR 340 (394)
T ss_pred HHh
Confidence 765
No 51
>PRK02991 D-serine dehydratase; Provisional
Probab=100.00 E-value=2.6e-34 Score=287.49 Aligned_cols=243 Identities=16% Similarity=0.141 Sum_probs=180.4
Q ss_pred CCcccccCcCCCcccccCCCCCCC--C--------ceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchH
Q 019410 36 PSHVFSLGHFPTPIHKWNLPNLPH--N--------TEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNK 105 (341)
Q Consensus 36 ~~~~~~~~~~~TPl~~~~l~~L~~--g--------~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK 105 (341)
|.++.++++++|||++ ++.|++ | .+||+| +|+.||. +||||
T Consensus 65 ~~~~~~~~~~~TPL~~--~~~l~~~~g~~~~~~~~~~V~lK-------~E~~np~--------------------tGSFK 115 (441)
T PRK02991 65 PETAATGGIIESPLVA--IPAMQKALEKEYGQPISGRLLLK-------KDSHLPI--------------------SGSIK 115 (441)
T ss_pred ccccccCCccCCCcee--hHHHHHHhcccccCCcCceEEEE-------EcCCCCC--------------------cCChH
Confidence 4445677899999999 676654 4 699999 7777771 46679
Q ss_pred hHHHHHHHHH-----HHHcCC---------------------CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCC
Q 019410 106 VRKLEFLMAD-----AVAQGA---------------------DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVL 159 (341)
Q Consensus 106 ~Rkl~~ll~~-----A~~~g~---------------------~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~ 159 (341)
+|++.+++.. +++.|. .+||+ +|+||||+|+|++|+.+|++|+||||.+++
T Consensus 116 ~RGA~~~i~~l~~~~a~~~G~~~~~~~~~~l~~~~~~~~~~~~~VV~--aSsGN~G~alA~aA~~~G~~~tIvvP~~a~- 192 (441)
T PRK02991 116 ARGGIYEVLKHAEKLALEAGLLTLDDDYSKLASPEFRQFFSQYSIAV--GSTGNLGLSIGIMSAALGFKVTVHMSADAR- 192 (441)
T ss_pred HHHHHHHHHHhhHHHHHHhCCCCcCcchhhhcchhhhhhccCcEEEE--ECCcHHHHHHHHHHHHcCCCEEEEECCCCC-
Confidence 9999888764 345553 36776 467999999999999999999999999886
Q ss_pred cCCCCCcchhHHHHHhCCCEEEEECCccccccCcHHHHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHh
Q 019410 160 VDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQ 239 (341)
Q Consensus 160 ~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~ 239 (341)
..|++.++.|||+|+.++. .|+++ .+.++++.++.+..|+++. +.++..+.||.|++.||++|+.
T Consensus 193 -------~~K~~~ir~~GAeVi~~~~-~~~~a------~~~A~~la~~~~~~~~~~~-~~~~~~iaG~~Tig~EI~eQl~ 257 (441)
T PRK02991 193 -------QWKKDKLRSHGVTVVEYEG-DYGVA------VEEGRKAAESDPNCYFIDD-ENSRTLFLGYAVAGLRLKAQLA 257 (441)
T ss_pred -------HHHHHHHHhCCCEEEEECC-CHHHH------HHHHHHHHHhcCCeEeCCC-CCchhHHHhHHHHHHHHHHHhh
Confidence 4579999999999999986 46442 2334455544223565543 4567778899999999999996
Q ss_pred cCC--CC-CCCCEEEEcCCchhHHHHHHHHHhcC-CCCCeEEEEeeCCCCccchH-------h---------HHHHhhcc
Q 019410 240 TGT--GG-VKFDDIVVACGSGGTIAGLSLGSWLG-TLKAKVHAFSVCDDPDYFYD-------Y---------TQGLLDGL 299 (341)
Q Consensus 240 ~~~--~g-~~~D~Ivv~vGtGGt~aGl~~~~k~~-~~~~rVigVe~~g~~~~~~~-------~---------i~~l~~~~ 299 (341)
..+ .. ..||+||+|+|+||+++|++.++|.. .++++||+||+.+.+..... . ...+++++
T Consensus 258 ~~~~~vD~~~Pd~VvvpvGgGGliaGia~~lk~~~~~~~kVigVEp~ga~~~~~s~~~G~~~~~~~~~~g~~~~Tiadgl 337 (441)
T PRK02991 258 EQGIVVDADHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCMLLGLMTGLHDQISVQDIGIDNLTAADGL 337 (441)
T ss_pred hccCccccCCCCEEEEEeCccHHHHHHHHHHHHhcCCCCEEEEEecCCChHHHHHHhcCCCcceeccccCCCCcchhhhh
Confidence 210 00 13679999999999999999999986 68899999999987543210 0 11344444
Q ss_pred cCCC-----------CCCceEEeccchHHHHHHHHHH
Q 019410 300 NAGV-----------DSRDIVNIQNVSVYMTFKNILM 325 (341)
Q Consensus 300 ~~~~-----------~~~~iv~v~d~~~~~~~~~~~~ 325 (341)
.... ..++++.|+|.+++..++.++.
T Consensus 338 ~~~~~~~~~~~~~~~~vd~~v~VsD~ei~~a~~~L~~ 374 (441)
T PRK02991 338 AVGRASGFVGRAMERLLDGVYTVSDETLYRLLGLLAD 374 (441)
T ss_pred cCCCcchhHHHHHHHhCCeEEEECHHHHHHHHHHHHH
Confidence 4321 3689999999999999988875
No 52
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=100.00 E-value=1.8e-34 Score=275.61 Aligned_cols=231 Identities=20% Similarity=0.221 Sum_probs=179.8
Q ss_pred cccCcCCCcccccCCCCCCC--CceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHHHHH
Q 019410 40 FSLGHFPTPIHKWNLPNLPH--NTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMADAV 117 (341)
Q Consensus 40 ~~~~~~~TPl~~~~l~~L~~--g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~~A~ 117 (341)
+...+++|||++ +++|++ |++||+| |||+++ +||||+|.+.+++.+++
T Consensus 11 i~~~ig~TPl~~--~~~l~~~~g~~i~~K--------------------------~E~~np--tgS~Kdr~a~~~l~~~~ 60 (304)
T cd01562 11 IKPVVRRTPLLT--SPTLSELLGAEVYLK--------------------------CENLQK--TGSFKIRGAYNKLLSLS 60 (304)
T ss_pred HhCcCCCCCccc--chhhHHHhCCeEEEE--------------------------eccCCC--cCCcHHHhHHHHHHhcC
Confidence 444569999999 788876 7899999 666653 67889999999999988
Q ss_pred HcC-CCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCccccccCcHHH
Q 019410 118 AQG-ADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTL 196 (341)
Q Consensus 118 ~~g-~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~~~~~ 196 (341)
+.+ .++||++ |+||||+|+|++|+.+|++|++|||...+ ..++++++.+||+|+.++.. |++.
T Consensus 61 ~~~~~~~iv~~--ssGN~g~alA~~a~~~G~~~~ivvp~~~~--------~~k~~~l~~~Ga~vi~~~~~-~~~~----- 124 (304)
T cd01562 61 EEERAKGVVAA--SAGNHAQGVAYAAKLLGIPATIVMPETAP--------AAKVDATRAYGAEVVLYGED-FDEA----- 124 (304)
T ss_pred HhhcCCcEEEE--CCCHHHHHHHHHHHHcCCCEEEEECCCCC--------HHHHHHHHHcCCEEEEeCCC-HHHH-----
Confidence 776 5778875 45999999999999999999999998774 34799999999999999864 5432
Q ss_pred HHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcCCCCCeE
Q 019410 197 TNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKV 276 (341)
Q Consensus 197 ~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~~~~~rV 276 (341)
...++++.++. +.|++ .++.|+....||.+++.||++|+. .||+||+|+|||||++|++.++|..++.+||
T Consensus 125 -~~~a~~la~~~-~~~~~-~~~~n~~~~~g~~~~~~Ei~~q~~------~~d~vv~~vGtGgt~~Gi~~~lk~~~~~~kv 195 (304)
T cd01562 125 -EAKARELAEEE-GLTFI-HPFDDPDVIAGQGTIGLEILEQVP------DLDAVFVPVGGGGLIAGIATAVKALSPNTKV 195 (304)
T ss_pred -HHHHHHHHHhc-CCEEe-CCCCCcchhccHHHHHHHHHHhcC------CCCEEEEecCHHHHHHHHHHHHHHhCCCCEE
Confidence 23455666554 34443 334577778899999999999985 3999999999999999999999999999999
Q ss_pred EEEeeCCCCccchH----------hHHHHhhcccCC-----------CCCCceEEeccchHHHHHHHHHH
Q 019410 277 HAFSVCDDPDYFYD----------YTQGLLDGLNAG-----------VDSRDIVNIQNVSVYMTFKNILM 325 (341)
Q Consensus 277 igVe~~g~~~~~~~----------~i~~l~~~~~~~-----------~~~~~iv~v~d~~~~~~~~~~~~ 325 (341)
|+|++.++...... ..+.+..++... -..++++.|.|.+.+.+++.++.
T Consensus 196 igv~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~ 265 (304)
T cd01562 196 IGVEPEGAPAMAQSLAAGKPVTLPEVDTIADGLAVKRPGELTFEIIRKLVDDVVTVSEDEIAAAMLLLFE 265 (304)
T ss_pred EEEEECCCchHHHHHHcCCcccCCCCCcccccccCCCchHHHHHHHHHhCCeEEEECHHHHHHHHHHHHH
Confidence 99999887543211 112222332210 13578999999999999888764
No 53
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=100.00 E-value=2.5e-35 Score=278.41 Aligned_cols=238 Identities=20% Similarity=0.129 Sum_probs=196.9
Q ss_pred cccCcCCCcccccCCCCCCC--CceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHHHHH
Q 019410 40 FSLGHFPTPIHKWNLPNLPH--NTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMADAV 117 (341)
Q Consensus 40 ~~~~~~~TPl~~~~l~~L~~--g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~~A~ 117 (341)
...-+++|||++ +.++.. .++||+| +|++||++|. |+|.+..|+.+|+
T Consensus 46 ~~~liG~TPlv~--ln~i~~g~~~~i~~K-------~E~~~p~~Sv---------------------KdRia~sMi~~Ae 95 (362)
T KOG1252|consen 46 VRDLIGNTPLVK--LNKIAGGCVARIAAK-------LEYMNPGGSV---------------------KDRIAWSMIEDAE 95 (362)
T ss_pred HHHHhCCCceEE--eccccCCccceEEEE-------eeecCCcccH---------------------HHHHHHHHHHHHH
Confidence 345679999999 677656 4699999 9999998766 9999999999999
Q ss_pred HcCC-----CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCc-ccccc
Q 019410 118 AQGA-----DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKE-EYSKI 191 (341)
Q Consensus 118 ~~g~-----~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~-~~~~~ 191 (341)
.+|. ++|+ .+++||+|++||++|+.+|+||+++||+.++ ..+...+++|||||++++.. .+.
T Consensus 96 ~~G~i~pg~stli--EpTSGNtGigLA~~~a~~Gyk~i~tmP~~ms--------~Ek~~~l~a~Gaeii~tp~a~~~~-- 163 (362)
T KOG1252|consen 96 KKGLITPGKSTLI--EPTSGNTGIGLAYMAALRGYKCIITMPEKMS--------KEKRILLRALGAEIILTPPAAGMK-- 163 (362)
T ss_pred HcCCccCCceEEE--ecCCCchHHHHHHHHHHcCceEEEEechhhh--------HHHHHHHHHcCCEEEecChHHccC--
Confidence 9984 3444 4788999999999999999999999999986 34789999999999999863 222
Q ss_pred CcHHHHHHHHHHHHHhCCCcEEeCCCCCchhHH-HHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcC
Q 019410 192 GSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGT-WGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLG 270 (341)
Q Consensus 192 ~~~~~~~~~a~~l~~~g~~~~~ip~g~~n~~~~-~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~ 270 (341)
..+.+...++++..+.+++| +.+|+.||.+. .+|.+++.||+.|+. +++|.+|.++|||||++|+.+++|+.
T Consensus 164 -~~e~ai~~a~~l~~~~pna~-~l~Qf~np~Np~~hy~ttg~EI~~q~~-----g~vDi~V~gaGTGGTitgvGRylke~ 236 (362)
T KOG1252|consen 164 -GPESAIGKAEELLNKTPNAY-ILDQFHNPGNPLAHYETTGPEIWRQLD-----GKVDIFVAGAGTGGTITGVGRYLKEQ 236 (362)
T ss_pred -ChHHHHHHHHHHHHhCCChH-HHHHhcCCCCcccccccccHHHHHHhc-----CCCCEEEeccCCCceeechhHHHHHh
Confidence 22444556777777766766 45666666553 589999999999996 58999999999999999999999999
Q ss_pred CCCCeEEEEeeCCCCcc-----ch--HhHHHHhhcccCCCC----CCceEEeccchHHHHHHHHHHH
Q 019410 271 TLKAKVHAFSVCDDPDY-----FY--DYTQGLLDGLNAGVD----SRDIVNIQNVSVYMTFKNILMN 326 (341)
Q Consensus 271 ~~~~rVigVe~~g~~~~-----~~--~~i~~l~~~~~~~~~----~~~iv~v~d~~~~~~~~~~~~~ 326 (341)
+++++|++||+.++.-+ .. +.|+++..||++.+. +|+++.+++++++.+.+.|+.+
T Consensus 237 ~~~~kVv~vdp~~S~~~~~~~~g~~~~~I~GIGyg~~p~~ld~~~vd~~~~~~~d~A~~~Ar~La~e 303 (362)
T KOG1252|consen 237 NPNIKVVGVDPQESIVLSGGKPGPTFHKIQGIGYGFIPTTLDTKLVDEVLKVSSDEAIEMARRLALE 303 (362)
T ss_pred CCCCEEEEeCCCcceeccCCCCCCCccceeccccCcCccccchHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999999877432 23 789999999999663 5788889999999999998765
No 54
>PRK08246 threonine dehydratase; Provisional
Probab=100.00 E-value=1.1e-34 Score=278.86 Aligned_cols=228 Identities=20% Similarity=0.160 Sum_probs=173.8
Q ss_pred ccccCcCCCcccccCCCCCCC-CceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHHHHH
Q 019410 39 VFSLGHFPTPIHKWNLPNLPH-NTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMADAV 117 (341)
Q Consensus 39 ~~~~~~~~TPl~~~~l~~L~~-g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~~A~ 117 (341)
++...+++|||++ ++.|+. +.+||+| +|++|| +||||+|++.+++..+.
T Consensus 16 ~i~~~i~~TPl~~--~~~l~~~~~~i~~K-------~E~~np---------------------tGS~K~R~a~~~~~~~~ 65 (310)
T PRK08246 16 RIAPHIRRTPVLE--ADGAGFGPAPVWLK-------LEHLQH---------------------TGSFKARGAFNRLLAAP 65 (310)
T ss_pred HHhCcCCCCCeee--ccccccCCCEEEEE-------ECCCCC---------------------CCCCHHHHHHHHHHhhc
Confidence 6677789999999 777766 6899999 555555 57789999999888776
Q ss_pred HcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCccccccCcHHHH
Q 019410 118 AQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLT 197 (341)
Q Consensus 118 ~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~~~~~~ 197 (341)
+ +.++||+. |+||||+++|++|+++|++|+||||...+ ..|+.+++.|||+|+.++. .|++ .+
T Consensus 66 ~-~~~~vv~a--SsGN~g~a~A~~a~~~G~~~~iv~p~~~~--------~~k~~~~~~~GA~V~~~~~-~~~~-----~~ 128 (310)
T PRK08246 66 V-PAAGVVAA--SGGNAGLAVAYAAAALGVPATVFVPETAP--------PAKVARLRALGAEVVVVGA-EYAD-----AL 128 (310)
T ss_pred c-cCCeEEEe--CCCHHHHHHHHHHHHcCCCEEEEECCCCc--------HHHHHHHHHCCCEEEEeCC-CHHH-----HH
Confidence 5 56778874 56999999999999999999999998875 3479999999999999986 3533 22
Q ss_pred HHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcCCCCCeEE
Q 019410 198 NILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVH 277 (341)
Q Consensus 198 ~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~~~~~rVi 277 (341)
+ .++++.++. ..|+ +.++.|+....||.+++.||++|+. .||+||+|+|||||++|++.+++. ++|||
T Consensus 129 ~-~a~~~~~~~-g~~~-~~~~~n~~~i~g~~t~~~Ei~eq~~------~~D~iv~~vG~GG~~~Gi~~~~~~---~~~vi 196 (310)
T PRK08246 129 E-AAQAFAAET-GALL-CHAYDQPEVLAGAGTLGLEIEEQAP------GVDTVLVAVGGGGLIAGIAAWFEG---RARVV 196 (310)
T ss_pred H-HHHHHHHhc-CCEe-CCCCCChhhhcchHHHHHHHHHhcC------CCCEEEEecCccHHHHHHHHHhcC---CCEEE
Confidence 2 234444432 3444 4556788889999999999999984 599999999999999999999974 48999
Q ss_pred EEeeCCCCccch---------HhHHHHh-hcccC-----------CCCCCceEEeccchHHHHHHHHHH
Q 019410 278 AFSVCDDPDYFY---------DYTQGLL-DGLNA-----------GVDSRDIVNIQNVSVYMTFKNILM 325 (341)
Q Consensus 278 gVe~~g~~~~~~---------~~i~~l~-~~~~~-----------~~~~~~iv~v~d~~~~~~~~~~~~ 325 (341)
||++++++.... ....++. ++++. .-..++++.|+|.+++..++.++.
T Consensus 197 ~ve~~~~~~~~~s~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Vsd~e~~~a~~~l~~ 265 (310)
T PRK08246 197 AVEPEGAPTLHAALAAGEPVDVPVSGIAADSLGARRVGEIAFALARAHVVTSVLVSDEAIIAARRALWE 265 (310)
T ss_pred EEeeCCChHHHHHHHcCCcccCCCCCceeccccCCCccHHHHHHHHhcCCeEEEECHHHHHHHHHHHHH
Confidence 999998764321 1111111 11111 113679999999999999888764
No 55
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=100.00 E-value=1.7e-33 Score=261.11 Aligned_cols=202 Identities=24% Similarity=0.274 Sum_probs=167.1
Q ss_pred CcccccCCCCCCC--CceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHHHHHHcC---C
Q 019410 47 TPIHKWNLPNLPH--NTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMADAVAQG---A 121 (341)
Q Consensus 47 TPl~~~~l~~L~~--g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~~A~~~g---~ 121 (341)
|||++ +++|++ +.+||+| +||+++ +||||+|++.+++..+.+.| .
T Consensus 1 TPl~~--~~~l~~~~~~~l~~K--------------------------~e~~~p--tgS~K~R~a~~~l~~a~~~g~~~~ 50 (244)
T cd00640 1 TPLVR--LKRLSKLGGANIYLK--------------------------LEFLNP--TGSFKDRGALNLILLAEEEGKLPK 50 (244)
T ss_pred CCeeE--ccccccccCCEEEEE--------------------------ecccCC--cCCcHHHHHHHHHHHHHHcCCCCC
Confidence 89998 777776 6899999 666643 58899999999999999988 5
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCccccccCcHHHHHHHH
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILK 201 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~a 201 (341)
++||++ |+||||+|+|++|+++|++|++|+|...+ ..|+++++.+||+|+.++.. |++. ...+
T Consensus 51 ~~vv~~--ssGN~g~alA~~a~~~g~~~~v~~p~~~~--------~~~~~~~~~~Ga~v~~~~~~-~~~~------~~~a 113 (244)
T cd00640 51 GVIIES--TGGNTGIALAAAAARLGLKCTIVMPEGAS--------PEKVAQMRALGAEVVLVPGD-FDDA------IALA 113 (244)
T ss_pred CEEEEe--CCcHHHHHHHHHHHHcCCCEEEEECCCCC--------HHHHHHHHHCCCEEEEECCC-HHHH------HHHH
Confidence 778774 44999999999999999999999998874 45899999999999999874 5431 2345
Q ss_pred HHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcCCCCCeEEEEee
Q 019410 202 EKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSV 281 (341)
Q Consensus 202 ~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~~~~~rVigVe~ 281 (341)
+++.++.++.|+++. +.|+.+.+||.+++.||.+|+.+ ..+|+||+|+||||+++|++.+++..++.+|||+|++
T Consensus 114 ~~~~~~~~~~~~~~~-~~n~~~~~g~~~~~~Ei~~q~~~----~~~d~ivvp~GtGg~~~G~~~~~~~~~~~~~ii~v~~ 188 (244)
T cd00640 114 KELAEEDPGAYYVNQ-FDNPANIAGQGTIGLEILEQLGG----QKPDAVVVPVGGGGNIAGIARALKELLPNVKVIGVEP 188 (244)
T ss_pred HHHHHhCCCCEecCC-CCCHHHHHHHHHHHHHHHHHcCC----CCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEee
Confidence 555554345677654 47999999999999999999972 2699999999999999999999999999999999999
Q ss_pred CCCCccchHhHHHHhhcccCCCCCCceEEeccchHHHHHHHHHH
Q 019410 282 CDDPDYFYDYTQGLLDGLNAGVDSRDIVNIQNVSVYMTFKNILM 325 (341)
Q Consensus 282 ~g~~~~~~~~i~~l~~~~~~~~~~~~iv~v~d~~~~~~~~~~~~ 325 (341)
+++.|+|.+.+..++.++.
T Consensus 189 -------------------------~~~~v~d~~~~~a~~~l~~ 207 (244)
T cd00640 189 -------------------------EVVTVSDEEALEAIRLLAR 207 (244)
T ss_pred -------------------------eEEEECHHHHHHHHHHHHH
Confidence 6777777777777666654
No 56
>PRK06450 threonine synthase; Validated
Probab=100.00 E-value=8.1e-34 Score=275.88 Aligned_cols=224 Identities=17% Similarity=0.128 Sum_probs=174.3
Q ss_pred cccccCcCCCcccccCCCCCCCCceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHHHHH
Q 019410 38 HVFSLGHFPTPIHKWNLPNLPHNTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMADAV 117 (341)
Q Consensus 38 ~~~~~~~~~TPl~~~~l~~L~~g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~~A~ 117 (341)
..+++++++|||++ +. +||+| +|+.||+ ||||||.+..++..|.
T Consensus 50 ~~vslgeG~TPLv~--~~------~l~~K-------~E~~nPT---------------------GSfKDRga~~~i~~a~ 93 (338)
T PRK06450 50 HFISLGEGRTPLIK--KG------NIWFK-------LDFLNPT---------------------GSYKDRGSVTLISYLA 93 (338)
T ss_pred CCCCCCCCCCCcee--cC------CEEEE-------ecCCCCc---------------------CCCHHHHHHHHHHHHH
Confidence 36899999999999 43 69999 8888885 5569999999999999
Q ss_pred HcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCccccccCcHHHH
Q 019410 118 AQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLT 197 (341)
Q Consensus 118 ~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~~~~~~ 197 (341)
+.|.++|++. |+||||.|+|++|+++|++|+||||..++ ..|+.++++|||+|+.++.. |++.
T Consensus 94 ~~g~~~vv~a--SsGN~g~slA~~aa~~G~~~~i~vP~~~~--------~~k~~~i~~~GA~vi~v~~~-~~~~------ 156 (338)
T PRK06450 94 EKGIKQISED--SSGNAGASIAAYGAAAGIEVKIFVPETAS--------GGKLKQIESYGAEVVRVRGS-REDV------ 156 (338)
T ss_pred HcCCCEEEEE--CCcHHHHHHHHHHHHcCCCEEEEEcCCCC--------HHHHHHHHHcCCEEEEECCC-HHHH------
Confidence 9999998874 67999999999999999999999999875 45899999999999999863 5321
Q ss_pred HHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcCCC-----
Q 019410 198 NILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTL----- 272 (341)
Q Consensus 198 ~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~~~----- 272 (341)
.++ .++ ...+++ .+..||...+||.|++.||++|++. ..||+||+|+|+||+++|++++|+++.+
T Consensus 157 ~~~----a~~-~g~~~~-~~~~np~~ieG~kTia~EI~eql~~----~~pD~vvvpvG~Ggll~Gi~~g~~el~~~G~i~ 226 (338)
T PRK06450 157 AKA----AEN-SGYYYA-SHVLQPQFRDGIRTLAYEIAKDLDW----KIPNYVFIPVSAGTLLLGVYSGFKHLLDSGVIS 226 (338)
T ss_pred HHH----HHh-cCeEec-cCCCCccHHHHHHHHHHHHHHHcCC----CCCCEEEEECCchHHHHHHHHHHHHHHhcCCcc
Confidence 122 222 123444 3446899999999999999999852 3599999999999999999999997643
Q ss_pred -CCeEEEEeeCCCCccch----------HhHHHHhhcccCCC------------CCCceEEeccchHHHHHHHHH
Q 019410 273 -KAKVHAFSVCDDPDYFY----------DYTQGLLDGLNAGV------------DSRDIVNIQNVSVYMTFKNIL 324 (341)
Q Consensus 273 -~~rVigVe~~g~~~~~~----------~~i~~l~~~~~~~~------------~~~~iv~v~d~~~~~~~~~~~ 324 (341)
.+|||+|++++...... +...++++++.... ..++++.|+|.+++...+.++
T Consensus 227 ~~prii~Vq~~g~~p~~~a~~~~~~~~~~~~~tia~~l~~~~p~~~~~~~~~i~~~g~~v~V~d~ei~~a~~~La 301 (338)
T PRK06450 227 EMPKIVAVQTEQVSPLCAKFKGISYTPPDKVTSIADALVSTRPFLLDYMVKALSEYGECIVVSDNEIVEAWKELA 301 (338)
T ss_pred CCCeEEEEeeCCCCHHHHHhcCCCCCCCCCCCcceeeeecCCCCCHHHHHHHHHhcCcEEEECHHHHHHHHHHHH
Confidence 47999999988543211 11123334332111 124799999999999998875
No 57
>PRK08329 threonine synthase; Validated
Probab=100.00 E-value=7e-34 Score=277.35 Aligned_cols=226 Identities=15% Similarity=0.073 Sum_probs=176.3
Q ss_pred ccccCcCCCcccccCCCCCCCCceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHHHHHH
Q 019410 39 VFSLGHFPTPIHKWNLPNLPHNTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMADAVA 118 (341)
Q Consensus 39 ~~~~~~~~TPl~~~~l~~L~~g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~~A~~ 118 (341)
.++++.+.|||++ + +.+||+| +|+.|| +||||+|++..++..|.+
T Consensus 57 ~~sl~eg~Tpl~~--~-----~~~l~~K-------~E~~nP---------------------tGSfKdRga~~~i~~a~~ 101 (347)
T PRK08329 57 LPHLTPPITPTVK--R-----SIKVYFK-------LDYLQP---------------------TGSFKDRGTYVTVAKLKE 101 (347)
T ss_pred CCcCCCCCCcccc--C-----CCeEEEE-------eCCCCC---------------------CcCCHHHHHHHHHHHHHH
Confidence 4789999999999 4 3589999 666666 467799999999999999
Q ss_pred cCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCccccccCcHHHHH
Q 019410 119 QGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTN 198 (341)
Q Consensus 119 ~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~~~~~~~ 198 (341)
.|.++||+. |+||||+|+|++|+++|++|+||||..++ ..|+.+++.|||+|+.++.+ |++. .
T Consensus 102 ~g~~~vv~a--SsGN~g~alA~~aa~~G~~~~v~vp~~~~--------~~k~~~~~~~GA~v~~v~~~-~~~~------~ 164 (347)
T PRK08329 102 EGINEVVID--SSGNAALSLALYSLSEGIKVHVFVSYNAS--------KEKISLLSRLGAELHFVEGD-RMEV------H 164 (347)
T ss_pred cCCCEEEEE--CCCcHHHHHHHHHHHcCCcEEEEECCCCh--------HHHHHHHHHcCCEEEEECCC-HHHH------H
Confidence 999999985 57999999999999999999999998774 46899999999999999863 5331 2
Q ss_pred HHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcC------CC
Q 019410 199 ILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLG------TL 272 (341)
Q Consensus 199 ~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~------~~ 272 (341)
+.++++.++. +.+++. ++.||...+||.|++.||++|++ .||+||+|+|+||+++|++++++++ .+
T Consensus 165 ~~a~~l~~~~-~~~~~~-~~~np~~~eG~~t~~~Ei~eql~------~pD~vvvpvG~Gg~l~Gi~~g~kel~~~g~i~~ 236 (347)
T PRK08329 165 EEAVKFSKRN-NIPYVS-HWLNPYFLEGTKTIAYEIYEQIG------VPDYAFVPVGSGTLFLGIWKGFKELHEMGEISK 236 (347)
T ss_pred HHHHHHHHhc-CCeecc-CCCCchhhccchhHHHHHHHHcC------CCCEEEEeCCcHHHHHHHHHHHHHHHhcCCCCC
Confidence 3344555543 333333 35689999999999999999984 5999999999999999999999975 25
Q ss_pred CCeEEEEeeCCCCccch--HhHHHHhhcccCCC-------------CCCceEEeccchHHHHHHHHH
Q 019410 273 KAKVHAFSVCDDPDYFY--DYTQGLLDGLNAGV-------------DSRDIVNIQNVSVYMTFKNIL 324 (341)
Q Consensus 273 ~~rVigVe~~g~~~~~~--~~i~~l~~~~~~~~-------------~~~~iv~v~d~~~~~~~~~~~ 324 (341)
.+|||+|++.+...... +....+++++.... ...+++.|+|.+++..++.++
T Consensus 237 ~p~ii~Vq~~g~~~~~~~~~~~~t~a~gi~i~~~~~~~~~~~~l~~~~g~~~~V~d~e~~~a~~~l~ 303 (347)
T PRK08329 237 MPKLVAVQAEGYESLCKRSKSENKLADGIAIPEPPRKEEMLRALEESNGFCISVGEEETRAALHWLR 303 (347)
T ss_pred CCEEEEEecCCCchHHhccCCCCceeeeEEeCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHH
Confidence 68999999988543221 12223344443211 123579999999999988764
No 58
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=100.00 E-value=5.5e-34 Score=284.20 Aligned_cols=244 Identities=16% Similarity=0.149 Sum_probs=179.5
Q ss_pred CCCcccccCcCCCcccccCCCCCCC----------CceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCch
Q 019410 35 IPSHVFSLGHFPTPIHKWNLPNLPH----------NTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGN 104 (341)
Q Consensus 35 ~~~~~~~~~~~~TPl~~~~l~~L~~----------g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggn 104 (341)
||...-++++.+|||++ +++|++ +.+||+| +|+.||. +|||
T Consensus 59 fp~~~~~~~~~~TPL~~--~~~ls~~~~~~~~~~~~~~v~lK-------lE~~nP~--------------------tGSf 109 (431)
T TIGR02035 59 FPETAATGGIIESPLVE--IFNMQKELEKKYQQEIPGRLLLK-------MDSHLPI--------------------SGSI 109 (431)
T ss_pred CccccccCCccCCCccc--hHHHHHHhhhcccCCcCceEEEE-------ecccCCc--------------------cCCc
Confidence 44333456999999999 676653 4699999 8877771 3566
Q ss_pred HhHHHHHHHHH-----HHHcCC---------------------CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCC
Q 019410 105 KVRKLEFLMAD-----AVAQGA---------------------DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKV 158 (341)
Q Consensus 105 K~Rkl~~ll~~-----A~~~g~---------------------~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~ 158 (341)
|+|++.+++.. |++.|. .+||+ +|+||||+++|++|+.+|++|+||||.+++
T Consensus 110 KdRGA~~~i~~~~~~~A~~~G~l~~~~~~~~l~e~~~~~~~~~~~Vv~--aSsGN~G~slA~~Aa~lG~~~~IvmP~~a~ 187 (431)
T TIGR02035 110 KARGGIYEVLKHAEELALEAGLLKLDDDYSILAEKKFKDFFSRYSIAV--GSTGNLGLSIGIISAALGFQVTVHMSADAK 187 (431)
T ss_pred HHHHHHHHHHHhhHHHHHHcCCCCcCcchhhhcchhhhhcccCceEEE--ECccHHHHHHHHHHHHcCCCEEEEECCCCC
Confidence 99999998764 556664 35665 467999999999999999999999999886
Q ss_pred CcCCCCCcchhHHHHHhCCCEEEEECCccccccCcHHHHHHHHHHHHHhCCCcEEeCCCCCchh-HHHHHHHHHHHHHHH
Q 019410 159 LVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSI-GTWGYIEAIKEIEQQ 237 (341)
Q Consensus 159 ~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~a~~l~~~g~~~~~ip~g~~n~~-~~~G~~t~a~EI~~Q 237 (341)
..|+..++.|||+|+.++. .|+++ .+.++++.++.+..|++.. .|+. ...||.|++.||++|
T Consensus 188 --------~~K~~~ir~~GAeVv~~~~-~~~~a------~~~A~~la~~~~~~~~~d~--~n~~n~~aG~~T~g~EI~eQ 250 (431)
T TIGR02035 188 --------QWKKDKLRSKGVTVVEYES-DYGVA------VEEGRKNADADPMCYFVDD--ENSRNLFLGYAVAASRLKKQ 250 (431)
T ss_pred --------HHHHHHHHHcCCEEEEECC-CHHHH------HHHHHHHHHhcCCeEECCC--CCcccHHhhHHHHHHHHHHh
Confidence 3579999999999999986 46542 2234455554334455432 3432 357999999999999
Q ss_pred HhcCC---CCCCCCEEEEcCCchhHHHHHHHHHhcC-CCCCeEEEEeeCCCCccchH-------h--H-------HHHhh
Q 019410 238 LQTGT---GGVKFDDIVVACGSGGTIAGLSLGSWLG-TLKAKVHAFSVCDDPDYFYD-------Y--T-------QGLLD 297 (341)
Q Consensus 238 l~~~~---~g~~~D~Ivv~vGtGGt~aGl~~~~k~~-~~~~rVigVe~~g~~~~~~~-------~--i-------~~l~~ 297 (341)
+.... ....||+||+|+|+||+++|++.++|.. ++++|||+||+.+++..... . + ..+++
T Consensus 251 l~~~~~~~d~~~pd~V~vp~G~GGli~Gia~~lK~~~~~~vkvi~VEp~~s~~~~~s~~~g~~~~~~~~~~g~~~~T~Ad 330 (431)
T TIGR02035 251 FDKKGIVVDKEHPLFVYLPCGVGGGPGGVAFGLKLAFGDNVHCFFAEPTHSPCMLLGVYTGLHEKISVQDIGIDNITAAD 330 (431)
T ss_pred hhccccccccCCCCEEEEEeCcCHHHHHHHHHHHHhcCCCCEEEEEeeCCCHHHHHHHhcCCCccccccccCCCCCceec
Confidence 95200 0015789999999999999999999986 89999999999987543211 0 1 12344
Q ss_pred cccCCC-----------CCCceEEeccchHHHHHHHHHHH
Q 019410 298 GLNAGV-----------DSRDIVNIQNVSVYMTFKNILMN 326 (341)
Q Consensus 298 ~~~~~~-----------~~~~iv~v~d~~~~~~~~~~~~~ 326 (341)
+++... ..|+++.|+|.+++..++.|+..
T Consensus 331 Glav~~p~~~~~~~~~~~vd~vv~VsD~ei~~a~~~L~~~ 370 (431)
T TIGR02035 331 GLAVGRPSGFVGRLMEPLLSGIYTVDDYTLYDLLRILAES 370 (431)
T ss_pred cccCCCcchhHHHHHHHhCCeEEEECHHHHHHHHHHHHHH
Confidence 444311 36899999999999998887753
No 59
>PRK06260 threonine synthase; Validated
Probab=100.00 E-value=4.5e-34 Score=283.32 Aligned_cols=233 Identities=20% Similarity=0.220 Sum_probs=180.5
Q ss_pred ccccCcCCCcccccCCCCCCC--Cc-eEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHHH
Q 019410 39 VFSLGHFPTPIHKWNLPNLPH--NT-EVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMAD 115 (341)
Q Consensus 39 ~~~~~~~~TPl~~~~l~~L~~--g~-~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~~ 115 (341)
+++++.++|||++ +++|++ |. +||+| +|++|| +||||||++.+++..
T Consensus 60 ~v~l~~G~TPLv~--~~~l~~~~g~~~l~~K-------~E~~nP---------------------TGSfKdRga~~~v~~ 109 (397)
T PRK06260 60 IVSLNEGGTPLYR--CPNLEKELGVKELYVK-------HEGANP---------------------TGSFKDRGMTVGVTK 109 (397)
T ss_pred cccCCCCCCCeEE--chhhHHHhCCCcEEEE-------eCCCCC---------------------CcCcHHHHHHHHHHH
Confidence 6899999999999 788766 76 99999 666666 567799999999999
Q ss_pred HHHcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCC-CCCcCCCCCcchhHHHHHhCCCEEEEECCccccccCcH
Q 019410 116 AVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTS-KVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSV 194 (341)
Q Consensus 116 A~~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~-~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~~~ 194 (341)
|.+.|.++||+ +|+||||+|+|++|+++|++|+||||.. .+ ..|+.++++|||+|+.++. .|++.
T Consensus 110 a~~~g~~~vv~--aSsGN~g~alA~~aa~~G~~~~i~vP~~~~~--------~~k~~~~~~~GA~vi~v~~-~~~~~--- 175 (397)
T PRK06260 110 ALELGVKTVAC--ASTGNTSASLAAYAARAGLKCYVLLPAGKVA--------LGKLAQALLHGAKVLEVDG-NFDDA--- 175 (397)
T ss_pred HHHcCCCEEEE--eCCcHHHHHHHHHHHHcCCcEEEEEeCCCcc--------HHHHHHHHhcCCEEEEECC-cHHHH---
Confidence 99999999987 4779999999999999999999999986 43 3578899999999999986 35432
Q ss_pred HHHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcCC---
Q 019410 195 TLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGT--- 271 (341)
Q Consensus 195 ~~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~~--- 271 (341)
.+.++++.++. ..|+++ + .||...+||.|++.||++|+.. ..||+||+|+|+||+++|++.+|+++.
T Consensus 176 ---~~~a~~~~~~~-g~y~~~-~-~np~~~~G~~t~a~Ei~eQl~~----~~pd~vvvpvG~Gg~~~Gi~~~~~~l~~~G 245 (397)
T PRK06260 176 ---LDMVVELAKEG-KIYLLN-S-INPFRLEGQKTIGFEIADQLGW----EVPDRVVLPVGNAGNISAIWKGFKELVELG 245 (397)
T ss_pred ---HHHHHHHHhhC-CEEeec-C-CCchhhcchhhHHHHHHHHhCC----CCCCEEEEeCCcHHHHHHHHHHHHHHHhcC
Confidence 23344554443 355553 3 4899999999999999999962 369999999999999999999998754
Q ss_pred ---CCCeEEEEeeCCCCccchH------------hHHHHhhcccC--CC-----------CCCceEEeccchHHHHHHHH
Q 019410 272 ---LKAKVHAFSVCDDPDYFYD------------YTQGLLDGLNA--GV-----------DSRDIVNIQNVSVYMTFKNI 323 (341)
Q Consensus 272 ---~~~rVigVe~~g~~~~~~~------------~i~~l~~~~~~--~~-----------~~~~iv~v~d~~~~~~~~~~ 323 (341)
..+|||||++++....... ....+.+++.. .. ..++++.|+|.+++.+++.+
T Consensus 246 ~i~~~prii~Vq~~g~~~~~~a~~~g~~~~~~~~~~~tia~~i~i~~p~~~~~~~~~l~~~~g~~v~V~d~e~~~a~~~l 325 (397)
T PRK06260 246 IIDKLPKMTGIQAEGAAPIVEAIKKGKDEIEPVENPETVATAIRIGNPVNAPKALRAIRESGGTAEAVSDEEILDAQKLL 325 (397)
T ss_pred CcCCCCeEEEEecCCCcHHHHHHHcCCCcccccCCCCceeeeeEeCCCCCHHHHHHHHHHHCCEEEEECHHHHHHHHHHH
Confidence 3469999999987542110 11122222221 11 12468999999999998887
Q ss_pred HH
Q 019410 324 LM 325 (341)
Q Consensus 324 ~~ 325 (341)
+.
T Consensus 326 a~ 327 (397)
T PRK06260 326 AR 327 (397)
T ss_pred HH
Confidence 65
No 60
>PRK08813 threonine dehydratase; Provisional
Probab=100.00 E-value=1.7e-33 Score=273.90 Aligned_cols=226 Identities=17% Similarity=0.173 Sum_probs=177.5
Q ss_pred cccccCcCCCcccccCCCCCCCCceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHHHHH
Q 019410 38 HVFSLGHFPTPIHKWNLPNLPHNTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMADAV 117 (341)
Q Consensus 38 ~~~~~~~~~TPl~~~~l~~L~~g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~~A~ 117 (341)
.|+...+.+|||++ ++.| +||+| +|.+|| +||||+|++.+++..+.
T Consensus 31 ~~i~~~i~~TPL~~--~~~l----~v~lK-------~E~~np---------------------tGSfK~RgA~~~l~~a~ 76 (349)
T PRK08813 31 ARLRRYLSPTPLHY--AERF----GVWLK-------LENLQR---------------------TGSYKVRGALNALLAGL 76 (349)
T ss_pred HHHhCcCCCCCeEE--CCCC----cEEEE-------ecCCCC---------------------cCCCHHHHHHHHHHHHH
Confidence 37778889999999 5554 49999 666666 46679999999999999
Q ss_pred HcCCC-eEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCccccccCcHHH
Q 019410 118 AQGAD-CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTL 196 (341)
Q Consensus 118 ~~g~~-~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~~~~~ 196 (341)
+.+.. .||+ +|+||||+|+|++|+.+|++|+||||...+ ..|+..++.|||+|+.++. .|+++
T Consensus 77 ~~~~~~~VV~--aSsGN~G~alA~aa~~~Gi~~~IvvP~~~~--------~~K~~~i~~~GAeVv~~g~-~~~~a----- 140 (349)
T PRK08813 77 ERGDERPVIC--ASAGNHAQGVAWSAYRLGVQAITVMPHGAP--------QTKIAGVAHWGATVRQHGN-SYDEA----- 140 (349)
T ss_pred HcCCCCeEEE--ECCCHHHHHHHHHHHHcCCCEEEEEcCCCC--------HHHHHHHHHcCCEEEEECC-CHHHH-----
Confidence 88764 6776 467999999999999999999999999875 3579999999999999976 46542
Q ss_pred HHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcCCCCCeE
Q 019410 197 TNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKV 276 (341)
Q Consensus 197 ~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~~~~~rV 276 (341)
.+.+++++++. +.|+++ ++.|+..++||.|++.||++| .||+||+|+|+||+++|++.++|. +.+||
T Consensus 141 -~~~a~~la~~~-g~~~v~-~~~np~~i~G~~Tig~EI~e~--------~pD~VvvpvGgGGliaGia~~lk~--~~~rV 207 (349)
T PRK08813 141 -YAFARELADQN-GYRFLS-AFDDPDVIAGQGTVGIELAAH--------APDVVIVPIGGGGLASGVALALKS--QGVRV 207 (349)
T ss_pred -HHHHHHHHHhc-CCEEcC-ccCChHHHHHHHHHHHHHHcC--------CCCEEEEEeCccHHHHHHHHHHhc--CCCEE
Confidence 23455565543 456664 356899999999999999876 379999999999999999999996 57999
Q ss_pred EEEeeCCCCccch---------HhHHHHhhcccCC-----------CCCCceEEeccchHHHHHHHHHHH
Q 019410 277 HAFSVCDDPDYFY---------DYTQGLLDGLNAG-----------VDSRDIVNIQNVSVYMTFKNILMN 326 (341)
Q Consensus 277 igVe~~g~~~~~~---------~~i~~l~~~~~~~-----------~~~~~iv~v~d~~~~~~~~~~~~~ 326 (341)
|||++++...... +....++++++.. -..|+++.|+|.+++..++.++..
T Consensus 208 igVqpega~~~~~s~~g~~~~~~~~~tiadgl~~~~p~~~~~~i~~~~vd~vv~Vsd~ei~~a~~~l~~~ 277 (349)
T PRK08813 208 VGAQVEGVDSMARAIRGDLREIAPVATLADGVKVKIPGFLTRRLCSSLLDDVVIVREAELRETLVRLALE 277 (349)
T ss_pred EEEEECCCchHHHHHcCCCcccCCCCceecccccCCcchhHHHHHHHhCCeEEEECHHHHHHHHHHHHHH
Confidence 9999998754211 1122345554421 136899999999999998887753
No 61
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=100.00 E-value=2.7e-33 Score=277.78 Aligned_cols=236 Identities=17% Similarity=0.161 Sum_probs=172.3
Q ss_pred ccCcCCCcccccCCCCCCC--C-ceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHHHHH
Q 019410 41 SLGHFPTPIHKWNLPNLPH--N-TEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMADAV 117 (341)
Q Consensus 41 ~~~~~~TPl~~~~l~~L~~--g-~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~~A~ 117 (341)
.....+|||++ +++|++ | .+||+| +||++. ++||||+|++.+.+..+.
T Consensus 39 ~~~~~~TPL~~--~~~l~~~~G~~~v~~K--------------------------~E~~q~-ptgSFK~RG~~~~i~~~~ 89 (399)
T PRK08206 39 FPGYAPTPLVA--LPDLAAELGVGSILVK--------------------------DESYRF-GLNAFKALGGAYAVARLL 89 (399)
T ss_pred CCCCCCCCCcc--hHHHHHHhCCCcEEEe--------------------------cccCcC-CCCChHHhhHHHHHHHHH
Confidence 34778999999 788876 7 599999 666532 368889998776665544
Q ss_pred H--cC-------------------CC--eEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHH
Q 019410 118 A--QG-------------------AD--CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVER 174 (341)
Q Consensus 118 ~--~g-------------------~~--~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~ 174 (341)
. .+ ++ +|| ++|+||||+|+|++|+.+|++|+||||...+ ..++..++
T Consensus 90 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv--~aSsGN~g~alA~~a~~~G~~~~Ivvp~~~~--------~~k~~~i~ 159 (399)
T PRK08206 90 AEKLGLDISELSFEELTSGEVREKLGDITFA--TATDGNHGRGVAWAAQQLGQKAVIYMPKGSS--------EERVDAIR 159 (399)
T ss_pred HHHhCCCcccCCHHHhhhhHHHHhccCCEEE--EeCCcHHHHHHHHHHHHcCCCEEEEECCCCC--------HHHHHHHH
Confidence 2 22 22 344 3688999999999999999999999998875 34788999
Q ss_pred hCCCEEEEECCccccccCcHHHHHHHHHHHHHhCCCcEEeCC----CCCc--hhHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 019410 175 LVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPV----GGSN--SIGTWGYIEAIKEIEQQLQTGTGGVKFD 248 (341)
Q Consensus 175 ~~GAeV~~v~~~~~~~~~~~~~~~~~a~~l~~~g~~~~~ip~----g~~n--~~~~~G~~t~a~EI~~Ql~~~~~g~~~D 248 (341)
+|||+|+.++. .|++ .++. +.++.++. ..|+++. ++.| +...+||.|++.||++|+.+ .+..||
T Consensus 160 ~~GA~Vi~v~~-~~~~-----~~~~-a~~~~~~~-g~~~v~~~~~~~~~~~~~~~~~G~~t~a~EI~eQl~~--~~~~pD 229 (399)
T PRK08206 160 ALGAECIITDG-NYDD-----SVRL-AAQEAQEN-GWVVVQDTAWEGYEEIPTWIMQGYGTMADEAVEQLKE--MGVPPT 229 (399)
T ss_pred HcCCEEEEeCC-CHHH-----HHHH-HHHHHHHc-CCEEecCccccCcccccHHHHHHhHHHHHHHHHHHHh--cCCCCC
Confidence 99999999986 3543 2222 33333332 3566642 3333 66688999999999999962 112699
Q ss_pred EEEEcCCchhHHHHHHHHHhcCC--CCCeEEEEeeCCCCccchH-------hH----HHHhhcccCCC-----------C
Q 019410 249 DIVVACGSGGTIAGLSLGSWLGT--LKAKVHAFSVCDDPDYFYD-------YT----QGLLDGLNAGV-----------D 304 (341)
Q Consensus 249 ~Ivv~vGtGGt~aGl~~~~k~~~--~~~rVigVe~~g~~~~~~~-------~i----~~l~~~~~~~~-----------~ 304 (341)
+||+|+|+|||++|++.+++++. +.+|||+||++++...... .+ ..+++++.... .
T Consensus 230 ~vvvpvG~GG~~aGi~~~~k~~~~~~~~kii~Vep~gs~~l~~s~~~g~~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~ 309 (399)
T PRK08206 230 HVFLQAGVGSLAGAVLGYFAEVYGEQRPHFVVVEPDQADCLYQSAVDGKPVAVTGDMDTIMAGLACGEPNPLAWEILRNC 309 (399)
T ss_pred EEEEcCCccHHHHHHHHHHHHHcCCCCCEEEEECCCCCchHHHHHHcCCcEEeCCCCCceeccCCCCCcCHHHHHHHHHh
Confidence 99999999999999999999873 4789999999987543211 01 12444443211 3
Q ss_pred CCceEEeccchHHHHHHHHHH
Q 019410 305 SRDIVNIQNVSVYMTFKNILM 325 (341)
Q Consensus 305 ~~~iv~v~d~~~~~~~~~~~~ 325 (341)
.+++|.|+|.+++..++.++.
T Consensus 310 ~d~~v~VsD~ei~~a~r~La~ 330 (399)
T PRK08206 310 ADAFISCPDEVAALGMRILAN 330 (399)
T ss_pred CCEEEEECHHHHHHHHHHHhc
Confidence 589999999999999999874
No 62
>PRK05638 threonine synthase; Validated
Probab=100.00 E-value=4.4e-33 Score=279.79 Aligned_cols=192 Identities=18% Similarity=0.173 Sum_probs=158.7
Q ss_pred cccccCcCCCcccccCCCCCCC--CceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHHH
Q 019410 38 HVFSLGHFPTPIHKWNLPNLPH--NTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMAD 115 (341)
Q Consensus 38 ~~~~~~~~~TPl~~~~l~~L~~--g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~~ 115 (341)
.++++++++|||++ ++ +++ |.+||+| +|++|| +||||||++.+++.+
T Consensus 58 ~~v~l~~G~TPLv~--~~-~~~~~g~~l~~K-------~E~~nP---------------------tGSfKdR~a~~~i~~ 106 (442)
T PRK05638 58 KIISLGEGGTPLIR--AR-ISEKLGENVYIK-------DETRNP---------------------TGSFRDRLATVAVSY 106 (442)
T ss_pred CccccCCCCCcEEc--cc-chHHhCCeEEEE-------eCCCCC---------------------CCChHHHHHHHHHHH
Confidence 46889999999999 53 443 7899999 676666 466799999999999
Q ss_pred HHHcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCccccccCcHH
Q 019410 116 AVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVT 195 (341)
Q Consensus 116 A~~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~~~~ 195 (341)
|++.|.++||+ +|+||||+|+|++|+++|++|+||||...+ ..|+.++++|||+|+.++. .|++
T Consensus 107 a~~~g~~~vv~--aSsGN~g~alA~~aa~~G~~~~i~vp~~~~--------~~k~~~~~~~GA~vi~v~~-~~~~----- 170 (442)
T PRK05638 107 GLPYAANGFIV--ASDGNAAASVAAYSARAGKEAFVVVPRKVD--------KGKLIQMIAFGAKIIRYGE-SVDE----- 170 (442)
T ss_pred HHHcCCCEEEE--eCCChHHHHHHHHHHHcCCCEEEEEeCCCC--------HHHHHHHHhcCcEEEEECC-CHHH-----
Confidence 99999999987 467999999999999999999999998774 4689999999999999985 3543
Q ss_pred HHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcCCC---
Q 019410 196 LTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTL--- 272 (341)
Q Consensus 196 ~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~~~--- 272 (341)
.+ ++++++.++ .+.|+++ ++.||...+||.|++.||++|+. ||+||+|+|+||+++|++.+|+++.+
T Consensus 171 ~~-~~a~~~~~~-~~~~~~~-~~~np~~~eG~~t~a~Ei~eq~~-------pD~vv~pvG~Gg~~~Gi~~gfkel~~~g~ 240 (442)
T PRK05638 171 AI-EYAEELARL-NGLYNVT-PEYNIIGLEGQKTIAFELWEEIN-------PTHVIVPTGSGSYLYSIYKGFKELLEIGV 240 (442)
T ss_pred HH-HHHHHHHHh-CCeEecC-CCCChhHhhhHHHHHHHHHHHHC-------cCEEEEeCCchHHHHHHHHHHHHHHhCCc
Confidence 22 234454443 2456665 55699999999999999999983 99999999999999999999998643
Q ss_pred ---CCeEEEEeeCCCCc
Q 019410 273 ---KAKVHAFSVCDDPD 286 (341)
Q Consensus 273 ---~~rVigVe~~g~~~ 286 (341)
.+|||||++++...
T Consensus 241 i~~~prii~Vq~~~~~p 257 (442)
T PRK05638 241 IEEIPKLIAVQTERCNP 257 (442)
T ss_pred ccCCCeEEEEecCCCCH
Confidence 36999999976543
No 63
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=100.00 E-value=2.5e-33 Score=271.04 Aligned_cols=231 Identities=16% Similarity=0.185 Sum_probs=177.2
Q ss_pred ccccCcCCCcccccCCCCCCC--Cc-eEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHHH
Q 019410 39 VFSLGHFPTPIHKWNLPNLPH--NT-EVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMAD 115 (341)
Q Consensus 39 ~~~~~~~~TPl~~~~l~~L~~--g~-~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~~ 115 (341)
++++.+++|||++ +++|++ |. +||+| +|++|| +||||+|++.+++..
T Consensus 16 ~~~l~~g~TPl~~--~~~l~~~~g~~~i~~K-------~E~~np---------------------tGSfKdR~a~~~l~~ 65 (328)
T TIGR00260 16 LVDLGEGVTPLFR--SPALVANVGIKNLYVL-------ELFHNP---------------------TLSFKDRGMAVALTK 65 (328)
T ss_pred hhhhccCCccCcc--chHHHHhcCCccEEeh-------hhccCC---------------------chhhHhhhHHHHHHH
Confidence 5778889999999 777765 66 99999 555555 577799999999999
Q ss_pred HHHcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCC-CCCcCCCCCcchhHHHHHhCCCEEEEECCccccccCcH
Q 019410 116 AVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTS-KVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSV 194 (341)
Q Consensus 116 A~~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~-~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~~~ 194 (341)
+.++|..+||+ +|+||||+|+|++|+.+|++|+||||.. .+ ..|+..++.+||+|+.++. .|++.
T Consensus 66 a~~~g~~~vv~--aSsGN~g~a~A~~a~~~g~~~~v~~p~~~~s--------~~k~~~~~~~GA~Vi~~~~-~~~~~--- 131 (328)
T TIGR00260 66 ALELGNDTVLC--ASTGNTGAAAAAYAGKAGVKVVILYPAGKIS--------LGKLAQALGYNAEVVAIDG-NFDDA--- 131 (328)
T ss_pred HHHcCCCEEEE--eCCcHHHHHHHHHhccCCCcEEEEECCCCCC--------HHHHHHHHhcCcEEEEecC-CHHHH---
Confidence 99999888887 4679999999999999999999999987 54 4589999999999999986 35432
Q ss_pred HHHHHHHHHHHHhCCCcEEeCCCCCc--hhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcC--
Q 019410 195 TLTNILKEKLLKEGRRPYVIPVGGSN--SIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLG-- 270 (341)
Q Consensus 195 ~~~~~~a~~l~~~g~~~~~ip~g~~n--~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~-- 270 (341)
.+.++++.++. ..+ +.+..| |..++||.+++.||++|+.. ..+|+||+|+||||+++|++.+++..
T Consensus 132 ---~~~~~~~~~~~-~~~--~~~~~n~~~~~~~g~~t~~~Ei~~q~~~----~~~d~iv~~vG~GG~~~G~~~~~~~~~~ 201 (328)
T TIGR00260 132 ---QRLVKQLFGDK-EAL--GLNSVNSIPYRLEGQKTYAFEAVEQLGW----EAPDKVVVPVPNSGNFGAILKGFKEKKE 201 (328)
T ss_pred ---HHHHHHHHhhc-Cee--ecccCCCCCeEeeeehhHHHHHHHHhCC----CCCCEEEEECCCcchHHHHHHHHHHHHh
Confidence 23344444432 223 233445 77889999999999999962 36999999999999999999999873
Q ss_pred -----CCCCeEEEEeeCCCCccchHh-----------HHHHhhcccCC-------------CCCCceEEeccchHHHHHH
Q 019410 271 -----TLKAKVHAFSVCDDPDYFYDY-----------TQGLLDGLNAG-------------VDSRDIVNIQNVSVYMTFK 321 (341)
Q Consensus 271 -----~~~~rVigVe~~g~~~~~~~~-----------i~~l~~~~~~~-------------~~~~~iv~v~d~~~~~~~~ 321 (341)
.| +|++|++.+.+...... ...+.+++... ...++++.|.|.+++.+++
T Consensus 202 ~g~~~~p--~v~~Ve~~~~~~~~~~~~~~g~~~~~~~~~t~~~~l~~~~p~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~ 279 (328)
T TIGR00260 202 GGLDSLP--VKRGIQAEGAADIVRAFLESGQWEPIEDPATLSTAIDIGNPANWERALELFRRSNGNAEDVSDEEILEAIK 279 (328)
T ss_pred cCCccCC--ceeEEEcCCCChHHHHHHcCCCcCcCCCCCccCcceecCCCCCHHHHHHHHHhcCCcEEecCHHHHHHHHH
Confidence 24 99999999874432211 12233332111 1356899999999999988
Q ss_pred HHHH
Q 019410 322 NILM 325 (341)
Q Consensus 322 ~~~~ 325 (341)
.++.
T Consensus 280 ~l~~ 283 (328)
T TIGR00260 280 LLAR 283 (328)
T ss_pred HHHH
Confidence 8765
No 64
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=100.00 E-value=3.9e-32 Score=268.41 Aligned_cols=203 Identities=19% Similarity=0.160 Sum_probs=149.6
Q ss_pred cccCcCCCcccccCCCCCCC--C-ceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHHHH
Q 019410 40 FSLGHFPTPIHKWNLPNLPH--N-TEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMADA 116 (341)
Q Consensus 40 ~~~~~~~TPl~~~~l~~L~~--g-~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~~A 116 (341)
..+...+|||++ +++|++ | .+||+| |||+++ +||||+|.+..++..+
T Consensus 44 ~~~~~~~TPL~~--~~~l~~~~g~~~iy~K--------------------------~E~~np--tGS~K~R~a~~~~~~a 93 (385)
T TIGR00263 44 RNYAGRPTPLTF--APNLTEALGGAKIYLK--------------------------REDLNH--TGAHKINNALGQALLA 93 (385)
T ss_pred HHhCCCCCCcee--hHHHHHHhCCCeEEEE--------------------------eCCCCC--CccchHHHHHHHHHHH
Confidence 344557999999 787776 5 799999 566542 5778999999999988
Q ss_pred HHcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCc--cccccCcH
Q 019410 117 VAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKE--EYSKIGSV 194 (341)
Q Consensus 117 ~~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~--~~~~~~~~ 194 (341)
++.|.+++|+. +++||||+|+|++|+++|++|+||||..... . ...|+++++++||+|+.++.+ .|+
T Consensus 94 ~~~g~~~vi~e-~ssGN~G~alA~~a~~~Gl~~~Iv~p~~~~~-~----~~~~~~~~~~~GA~Vv~v~~~~~~~~----- 162 (385)
T TIGR00263 94 KRMGKKRIIAE-TGAGQHGVATATAAALLGLDCEVYMGAEDVE-R----QKPNVFRMELLGAKVIPVTSGSGTLK----- 162 (385)
T ss_pred HHcCCCEEEEE-cCcHHHHHHHHHHHHHcCCCEEEEecCCccc-c----cchHHHHHHHcCCEEEEECCCCCCHH-----
Confidence 88888877753 3569999999999999999999999975211 1 135789999999999999742 232
Q ss_pred HHHHHHHHHHHHhCCCcEEeCCCCC--c--hhH-HHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhc
Q 019410 195 TLTNILKEKLLKEGRRPYVIPVGGS--N--SIG-TWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWL 269 (341)
Q Consensus 195 ~~~~~~a~~l~~~g~~~~~ip~g~~--n--~~~-~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~ 269 (341)
+.+++.++++.++.++.+++..+.. + +.. ..|+.+++.||++|+.+. .+..||+||+|+|||||++|++.++..
T Consensus 163 ~a~~~~~~~~~~~~~~~~y~~~~~~~~~p~~~~~~~~~~t~g~Ei~~Ql~~~-~~~~pD~vv~~vG~Gg~~~Gv~~~~~~ 241 (385)
T TIGR00263 163 DAVNEALRDWVTSVDDTHYVLGSAVGPHPFPTMVRDFQSVIGEEAKEQILEQ-EGRLPDAVIACVGGGSNAIGIFYAFID 241 (385)
T ss_pred HHHHHHHHHHHHhcCCceEEeCCcCCCCCchHHHHHHhhHHHHHHHHHHHhh-hCCCCCEEEEEeCchHHHHHHHHHHhh
Confidence 2223334444443334444432222 2 233 368889999999998531 123589999999999999999998855
Q ss_pred CCCCCeEEEEeeCCCC
Q 019410 270 GTLKAKVHAFSVCDDP 285 (341)
Q Consensus 270 ~~~~~rVigVe~~g~~ 285 (341)
.+++|||||++.++.
T Consensus 242 -~~~~~iigVe~~gs~ 256 (385)
T TIGR00263 242 -DPSVQLIGVEAGGLG 256 (385)
T ss_pred -CCCCeEEEEEeCCCc
Confidence 699999999999863
No 65
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=100.00 E-value=9.5e-32 Score=265.63 Aligned_cols=216 Identities=19% Similarity=0.192 Sum_probs=157.5
Q ss_pred CCCCchhhcCCCCCcccccCcCCCcccccCCCCCCC---CceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCC
Q 019410 24 APPSWASHLAPIPSHVFSLGHFPTPIHKWNLPNLPH---NTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQ 100 (341)
Q Consensus 24 ~~p~~~~~~~~~~~~~~~~~~~~TPl~~~~l~~L~~---g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~ 100 (341)
..|.|.+.|..+-+ .+...||||++ +++|++ |++||+| |||+++
T Consensus 39 ~~~~f~~~~~~~~~---~~~grpTPL~~--~~~Ls~~~gg~~IylK--------------------------~Edlnp-- 85 (397)
T PRK04346 39 NDPEFQAELDYLLK---NYVGRPTPLYF--AERLSEHLGGAKIYLK--------------------------REDLNH-- 85 (397)
T ss_pred cCHHHHHHHHHHHH---HhcCCCCCceE--hHHHHHHcCCCeEEEE--------------------------ECCCCC--
Confidence 34445544443321 22335899999 788876 5799999 888875
Q ss_pred CCchHhHHHHHHHHHHHHcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEE
Q 019410 101 LSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHI 180 (341)
Q Consensus 101 ~ggnK~Rkl~~ll~~A~~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV 180 (341)
+|+||+|.+...+..|++.|.++||+. .++||||+|+|++|+++|++|+||||..... . ...|+..|+++||+|
T Consensus 86 tGS~K~r~al~~~l~A~~~Gk~~vIae-tgaGnhG~A~A~~aa~~Gl~c~I~mp~~d~~-r----q~~nv~~m~~lGA~V 159 (397)
T PRK04346 86 TGAHKINNVLGQALLAKRMGKKRIIAE-TGAGQHGVATATAAALLGLECVIYMGAEDVE-R----QALNVFRMKLLGAEV 159 (397)
T ss_pred ccchHHHHHHHHHHHHHHcCCCeEEEe-cCcHHHHHHHHHHHHHcCCcEEEEecCCchh-h----hhhHHHHHHHCCCEE
Confidence 689999999999998999998888763 3459999999999999999999999975311 1 135889999999999
Q ss_pred EEECCc--cccccCcHHHHHHHHHHHHHhCCC-cEEeCCC-CCchh--H-HHHHHHHHHHHHHHHhcCCCCCCCCEEEEc
Q 019410 181 ELISKE--EYSKIGSVTLTNILKEKLLKEGRR-PYVIPVG-GSNSI--G-TWGYIEAIKEIEQQLQTGTGGVKFDDIVVA 253 (341)
Q Consensus 181 ~~v~~~--~~~~~~~~~~~~~~a~~l~~~g~~-~~~ip~g-~~n~~--~-~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~ 253 (341)
+.|+.+ .+.+ .+.+..+++.++.++ .|+++.. +.+|. . ..|+.+++.||.+|+.+. .+..||+||+|
T Consensus 160 v~v~~g~~~l~d-----a~~ea~~~~~~~~~~~~y~~gs~~gphp~p~~v~~~q~tig~Ei~eQ~~~~-~g~~pD~vVa~ 233 (397)
T PRK04346 160 VPVTSGSRTLKD-----AVNEALRDWVTNVEDTHYLIGSVAGPHPYPTMVRDFQSVIGEEAKAQILEK-EGRLPDAVVAC 233 (397)
T ss_pred EEECCCCCCHHH-----HHHHHHHHHHHhCCCCeEEeCCcCCCCCchHHHHHhcchHHHHHHHHHHHh-hCCCCCEEEEe
Confidence 999853 2221 222323333333223 3554321 22333 2 358999999999999631 13469999999
Q ss_pred CCchhHHHHHHHHHhcCCCCCeEEEEeeCCCC
Q 019410 254 CGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDP 285 (341)
Q Consensus 254 vGtGGt~aGl~~~~k~~~~~~rVigVe~~g~~ 285 (341)
+|+||+++|++.+|+. .+++||||||+.+..
T Consensus 234 VGgGg~~~Gi~~~f~~-~~~v~iigVE~~G~~ 264 (397)
T PRK04346 234 VGGGSNAIGIFHPFID-DESVRLIGVEAAGKG 264 (397)
T ss_pred cCccHhHHHHHHHHhh-CCCCeEEEEecCCCc
Confidence 9999999999999975 789999999999853
No 66
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]
Probab=100.00 E-value=2.9e-32 Score=247.48 Aligned_cols=241 Identities=20% Similarity=0.224 Sum_probs=187.1
Q ss_pred ccccCcCCCcccccCCCCCCC--CceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHHHH
Q 019410 39 VFSLGHFPTPIHKWNLPNLPH--NTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMADA 116 (341)
Q Consensus 39 ~~~~~~~~TPl~~~~l~~L~~--g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~~A 116 (341)
|++.....||+.- .+.|.+ |.+||+| +|.++. +|+||.|++.+.+..+
T Consensus 18 rik~~ihkTpVlT--S~~ln~~~g~~vfFK--------------------------cE~fQK--tGaFKfRGAlNav~~l 67 (323)
T KOG1251|consen 18 RIKPFIHKTPVLT--SENLNEKVGRHVFFK--------------------------CENFQK--TGAFKFRGALNAVSSL 67 (323)
T ss_pred HHHhhhccCceec--hhhHHHHhhhheEee--------------------------hhhhhh--ccceehhhhHHHHHHh
Confidence 6777777899987 677766 8899999 788775 7999999998887776
Q ss_pred H-HcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCccccccCcHH
Q 019410 117 V-AQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVT 195 (341)
Q Consensus 117 ~-~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~~~~ 195 (341)
. ++..+.|||++ +||||+|+|++|+.+|++++||||.++|. -|+..++.|||+|+++++. .+ .+
T Consensus 68 ~~ek~~kgvithS--SGNHaqAlalaAk~~giPa~IVvP~~AP~--------~Kv~a~~~Yga~ii~~e~~--~~-sR-- 132 (323)
T KOG1251|consen 68 KAEKRAKGVITHS--SGNHAQALALAAKILGIPATIVVPKDAPI--------CKVAATRGYGANIIFCEPT--VE-SR-- 132 (323)
T ss_pred hHhhhcCceEeec--CCcHHHHHHHHHHhcCCCeEEEecCCChH--------HHHHHHHhcCceEEEecCc--cc-hH--
Confidence 5 55678899984 59999999999999999999999999873 4799999999999999863 22 12
Q ss_pred HHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcCCCCCe
Q 019410 196 LTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAK 275 (341)
Q Consensus 196 ~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~~~~~r 275 (341)
+.+++++.++. ..++||++ .+|..+.|+.|++.||++|++ .+|++|+|+|+||+++|++.+.+.+.|+++
T Consensus 133 --E~va~~ltee~-g~~~i~Py-~~p~vIaGqgTiA~ElleqVg------~iDalfvpvgGGGllSgvAlaa~~l~P~i~ 202 (323)
T KOG1251|consen 133 --ESVAKDLTEET-GYYLIHPY-NHPSVIAGQGTIALELLEQVG------EIDALFVPVGGGGLLSGVALAAKSLKPSIE 202 (323)
T ss_pred --HHHHHHHHHhc-CcEEeCCC-CCcceeeccchHHHHHHHhhC------ccceEEEeecCcchhhHHHHHHhccCCCcE
Confidence 45566665543 34555543 245555677799999999996 599999999999999999999999999999
Q ss_pred EEEEeeCCCCccch----------HhHHHHhhcccCC-C----------CCCceEEeccchHHHHHHHHHHHHHhcCCCC
Q 019410 276 VHAFSVCDDPDYFY----------DYTQGLLDGLNAG-V----------DSRDIVNIQNVSVYMTFKNILMNILMNGKQP 334 (341)
Q Consensus 276 VigVe~~g~~~~~~----------~~i~~l~~~~~~~-~----------~~~~iv~v~d~~~~~~~~~~~~~~~~~~~~~ 334 (341)
|++||+++..+..- ..-+.+++|...+ + .+|||++|+|.+....++ +.|+.++---.|
T Consensus 203 vy~veP~~a~d~~qsf~~g~I~~l~tp~TIADG~r~~~lG~~t~pIir~~vddi~Tv~e~Ei~~~lk-~~~ermK~~vEP 281 (323)
T KOG1251|consen 203 VYAVEPEAADDGQQSFLKGKIVHLDTPKTIADGVRTSHLGPLTWPIIRDLVDDILTVSEDEIKEALK-LIWERMKVVVEP 281 (323)
T ss_pred EEEecCcccchHHHHHhcCCeEecCCchhhhhhhhhccccccchHHHHHHhhhheeecHHHHHHHHH-HHHHHHheeecc
Confidence 99999987654321 1223466666553 1 478999999997766554 567777655444
Q ss_pred C
Q 019410 335 T 335 (341)
Q Consensus 335 ~ 335 (341)
|
T Consensus 282 T 282 (323)
T KOG1251|consen 282 T 282 (323)
T ss_pred c
Confidence 4
No 67
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=1.1e-31 Score=265.44 Aligned_cols=256 Identities=18% Similarity=0.200 Sum_probs=178.5
Q ss_pred CCCCchhhcCCCCCcccccCcCCCcccccCCCCCCC---CceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCC
Q 019410 24 APPSWASHLAPIPSHVFSLGHFPTPIHKWNLPNLPH---NTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQ 100 (341)
Q Consensus 24 ~~p~~~~~~~~~~~~~~~~~~~~TPl~~~~l~~L~~---g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~ 100 (341)
..|.|.++|..+- ..+...||||++ +++|++ |++||+| |||+++
T Consensus 43 ~~~~f~~~~~~~~---~~~~g~pTPL~~--~~~Ls~~~Gg~~IylK--------------------------~Edlnp-- 89 (402)
T PRK13028 43 KDPDFIAELRYLL---KHYVGRPTPLYH--AKRLSEELGGAQIYLK--------------------------REDLNH-- 89 (402)
T ss_pred CCHHHHHHHHHHH---HHhCCCCCCeee--hHHhHhhcCCCeEEEE--------------------------ECCCCC--
Confidence 3444554444332 233446899999 788877 5799999 888875
Q ss_pred CCchHhHHHHHHHHHHHHcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEE
Q 019410 101 LSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHI 180 (341)
Q Consensus 101 ~ggnK~Rkl~~ll~~A~~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV 180 (341)
+||||+|.+...+..|++.|++.+|+. +++||||+|+|++|+++|++|+||||...+. . ...|+..|+++||+|
T Consensus 90 tGS~K~r~al~~~l~A~~~G~~~vI~e-tgsGnhG~A~A~aaa~~Gl~~~I~m~~~d~~-~----q~~nv~~mr~~GAeV 163 (402)
T PRK13028 90 TGAHKINNCLGQALLAKRMGKKRLIAE-TGAGQHGVATATAAALFGLECEIYMGEVDIE-R----QHPNVFRMKLLGAEV 163 (402)
T ss_pred CcchHHHHHHHHHHHHHHcCCCeEEEe-cCcHHHHHHHHHHHHHcCCCEEEEECCCcch-h----hHHHHHHHHHcCCEE
Confidence 789999999999999999998877753 3459999999999999999999999975431 1 135889999999999
Q ss_pred EEECCc--cccccCcHHHHHHHHHHHHHh-CCCcEEeCCC-CCc--hhHH-HHHHHHHHHHHHHHhcCCCCCCCCEEEEc
Q 019410 181 ELISKE--EYSKIGSVTLTNILKEKLLKE-GRRPYVIPVG-GSN--SIGT-WGYIEAIKEIEQQLQTGTGGVKFDDIVVA 253 (341)
Q Consensus 181 ~~v~~~--~~~~~~~~~~~~~~a~~l~~~-g~~~~~ip~g-~~n--~~~~-~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~ 253 (341)
+.++.+ .+++ ......+.+.++ ....|+++.. +.+ |..+ .|+.+++.||.+|+.+. .+..||+||+|
T Consensus 164 i~v~~g~~~~~~-----a~~~a~~~~~~~~~~~~y~~~s~~gp~p~p~~v~~~q~tig~Ei~~Q~~~~-~g~~pD~vV~~ 237 (402)
T PRK13028 164 VPVTRGGRTLKE-----AVDSAFEDYLKDPDNTHYAIGSVVGPHPFPMMVRDFQSVIGEEAREQFLEM-TGRLPDAVVAC 237 (402)
T ss_pred EEEcCCCCCHHH-----HHHHHHHHHHHhcCCcEEEecCcCCCCCcHHHHHHHhHHHHHHHHHHHHHh-hCCCCCEEEEE
Confidence 999852 2322 222222333333 2233444321 223 3333 58889999999998531 13469999999
Q ss_pred CCchhHHHHHHHHHhcCCCCCeEEEEeeCC--------CCcc-chH--------------------hHHHHhhcccC-CC
Q 019410 254 CGSGGTIAGLSLGSWLGTLKAKVHAFSVCD--------DPDY-FYD--------------------YTQGLLDGLNA-GV 303 (341)
Q Consensus 254 vGtGGt~aGl~~~~k~~~~~~rVigVe~~g--------~~~~-~~~--------------------~i~~l~~~~~~-~~ 303 (341)
+|+||+++|++.+|+. .++++|||||+.+ +... ..+ .+.++..++.. .+
T Consensus 238 VGgGg~~~Gi~~~f~~-~~~v~iigVE~~G~~~~~~~~aa~l~~g~~g~~~g~~~~~l~~~~g~~~~~~sia~gl~~~~v 316 (402)
T PRK13028 238 VGGGSNAIGLFSAFLD-DESVRLVGVEPAGRGLDLGEHAATLTLGKPGVIHGFKSYVLQDEDGEPAPVHSIAAGLDYPGV 316 (402)
T ss_pred cCchHHHHHHHHHHHh-CCCceEEEEecCCCCcccccccccccCCCcceecccceeeccccCCCcCCccceeccccCCCC
Confidence 9999999999999986 4899999999988 2211 000 11223333321 11
Q ss_pred ----------CCCceEEeccchHHHHHHHHHH
Q 019410 304 ----------DSRDIVNIQNVSVYMTFKNILM 325 (341)
Q Consensus 304 ----------~~~~iv~v~d~~~~~~~~~~~~ 325 (341)
..++++.|+|.+++..++.++.
T Consensus 317 gp~~~~l~~~~~~~~v~VtD~eal~a~~~La~ 348 (402)
T PRK13028 317 GPEHAYLKDIGRVEYVTATDEEALDAFFLLSR 348 (402)
T ss_pred CHHHHHHHHhcCcEEEEECHHHHHHHHHHHHH
Confidence 2358999999999999888774
No 68
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=100.00 E-value=1.1e-31 Score=264.13 Aligned_cols=233 Identities=17% Similarity=0.176 Sum_probs=172.0
Q ss_pred CCCcccccCCCCCCC--C-ceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHHHHHHc--
Q 019410 45 FPTPIHKWNLPNLPH--N-TEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMADAVAQ-- 119 (341)
Q Consensus 45 ~~TPl~~~~l~~L~~--g-~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~~A~~~-- 119 (341)
.+|||++ ++.|++ | .+||+| .|+++ +++||||+|++.+.+..+.++
T Consensus 21 ~~TPL~~--~~~l~~~~g~~~v~~K--------------------------~E~~~-~~tgSFK~RG~~~~v~~~~~~~~ 71 (376)
T TIGR01747 21 RPTPLCA--LDHLANLLGLKKILVK--------------------------DESKR-FGLNAFKMLGGSYAIAQYLAEKL 71 (376)
T ss_pred CCCCCcc--hHHHHHHhCCCcEEEe--------------------------eCCCC-CCCCChHHHHHHHHHHHHHHHHh
Confidence 7899999 788766 7 499999 55542 236889999988887776442
Q ss_pred ---------------------CCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCC
Q 019410 120 ---------------------GADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGA 178 (341)
Q Consensus 120 ---------------------g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GA 178 (341)
+.++||+ +|+||||+++|++|+.+|++|+||||..++ ..|+..++.|||
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~vv~--aSsGN~g~a~A~~Aa~~G~~~~I~vP~~~~--------~~k~~~i~~~GA 141 (376)
T TIGR01747 72 HLDIETLSFEHLKNDAIGEKMGQATFAT--ATDGNHGRGVAWAAQQLGQKAVVYMPKGSA--------QERVENILNLGA 141 (376)
T ss_pred CCCcccCCHHHHhhhHHHhhcCCCEEEE--ECccHHHHHHHHHHHHcCCCEEEEECCCCC--------HHHHHHHHhCCC
Confidence 3567887 467999999999999999999999998875 357999999999
Q ss_pred EEEEECCccccccCcHHHHHHHHHHHHHhCCCcEEeCC----CCC--chhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEE
Q 019410 179 HIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPV----GGS--NSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVV 252 (341)
Q Consensus 179 eV~~v~~~~~~~~~~~~~~~~~a~~l~~~g~~~~~ip~----g~~--n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv 252 (341)
+|+.++. .|++. .+.++++.++. +.|+++. ++. ++..++||.|++.||++|+... .+..||+||+
T Consensus 142 eVi~v~~-~~~~a------~~~a~~~~~~~-g~~~~~~~~~~~~~~~~~~ii~G~~Tia~Ei~eQl~~~-~~~~pD~vvv 212 (376)
T TIGR01747 142 ECTITDM-NYDDT------VRLAMQMAQQH-GWVVVQDTAWEGYEKIPTWIMQGYATLADEAVEQLREM-GSVTPTHVLL 212 (376)
T ss_pred EEEEECC-CHHHH------HHHHHHHHHhc-CcEEeccccccccccCCchHHHHHHHHHHHHHHHhhcc-CCCCCCEEEE
Confidence 9999986 36432 22334444432 3566652 333 3667899999999999999621 0136999999
Q ss_pred cCCchhHHHHHHHHHhcC-CCC-CeEEEEeeCCCCccchH-------------hHHHHhhcccCCC-----------CCC
Q 019410 253 ACGSGGTIAGLSLGSWLG-TLK-AKVHAFSVCDDPDYFYD-------------YTQGLLDGLNAGV-----------DSR 306 (341)
Q Consensus 253 ~vGtGGt~aGl~~~~k~~-~~~-~rVigVe~~g~~~~~~~-------------~i~~l~~~~~~~~-----------~~~ 306 (341)
|+|+||+++|++.+++.. .++ ++|++|++.+....... ....+++++.... ..+
T Consensus 213 pvG~GGl~~Gi~~~~~~~~~~~~p~vi~Vep~ga~~~~~s~~~~~g~~~~~~~~~~Tiadgl~~~~~~~~~~~~~~~~~~ 292 (376)
T TIGR01747 213 QAGVGSMAGGVLGYFVDVYSENNPHSIVVEPDKADCLYQSAVKKDGDIVNVGGDMATIMAGLACGEPNPISWEILRNCTS 292 (376)
T ss_pred CCchhHHHHHHHHHHHHhcCCCCCEEEEEeeCCCCHHHHHHHhcCCCeEEcCCCccccccccccCCcchHHHHHHHhcCC
Confidence 999999999999999765 343 69999999988654321 1123445544321 256
Q ss_pred ceEEeccchHHHHHHHHHH
Q 019410 307 DIVNIQNVSVYMTFKNILM 325 (341)
Q Consensus 307 ~iv~v~d~~~~~~~~~~~~ 325 (341)
++|.|+|.+++..++.|+.
T Consensus 293 ~~v~V~D~ei~~A~~~L~~ 311 (376)
T TIGR01747 293 QFISAQDSVAAKGMRVLGA 311 (376)
T ss_pred EEEEcCHHHHHHHHHHHhc
Confidence 8999999988888777764
No 69
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=100.00 E-value=1.1e-31 Score=265.88 Aligned_cols=235 Identities=17% Similarity=0.122 Sum_probs=172.6
Q ss_pred CCCcccccCCCCCCC--C-ceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHHHHHH--c
Q 019410 45 FPTPIHKWNLPNLPH--N-TEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMADAVA--Q 119 (341)
Q Consensus 45 ~~TPl~~~~l~~L~~--g-~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~~A~~--~ 119 (341)
.+|||++ ++.|++ | .+||+| +|+++. ++||||+|++.+.+..+.+ .
T Consensus 40 ~~TPL~~--~~~L~~~~g~~~v~lK--------------------------~E~~q~-~tGSFK~RGa~~~v~~l~~~~~ 90 (396)
T TIGR03528 40 QPTPLAE--LDNLAKHLGVGSILVK--------------------------DESYRF-GLNAFKVLGGSYAIGKYLAEKL 90 (396)
T ss_pred cCCCCcc--hHHHHHHhCCCcEEEe--------------------------eCCCCC-CcCChHHHHHHHHHHHHHHHHh
Confidence 7899999 787776 7 599999 777642 3799999998888776422 1
Q ss_pred C---------------------CCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCC
Q 019410 120 G---------------------ADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGA 178 (341)
Q Consensus 120 g---------------------~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GA 178 (341)
| ..+||+ +|+||||+++|++|+.+|++|+||||..++ ..++..+++|||
T Consensus 91 g~~~~~~~~~~l~~~~~~~~~~~~~vv~--aSsGN~g~alA~~aa~~Gi~~~IvvP~~~~--------~~K~~~ir~~GA 160 (396)
T TIGR03528 91 GKDISELSFEKLKSNEIREKLGDITFVT--ATDGNHGRGVAWAANQLGQKSVVYMPKGSA--------QIRLENIRAEGA 160 (396)
T ss_pred CCCcccccHHHhhhHHHHhhccCcEEEE--ECccHHHHHHHHHHHHcCCCEEEEEeCCCc--------HHHHHHHHhcCC
Confidence 1 236776 477999999999999999999999998875 357999999999
Q ss_pred EEEEECCccccccCcHHHHHHHHHHHHHhCCCcEEeCC----CCCc--hhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEE
Q 019410 179 HIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPV----GGSN--SIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVV 252 (341)
Q Consensus 179 eV~~v~~~~~~~~~~~~~~~~~a~~l~~~g~~~~~ip~----g~~n--~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv 252 (341)
+|+.++. .|++. .+.++++.++. ..++++. ++.| +....||.|++.||++|+...+ +..||+||+
T Consensus 161 eVi~~~~-~~~~a------~~~a~~~a~~~-g~~~v~~~~~~~~~~~~~~~i~G~~Tig~EI~eQl~~~~-~~~pD~vvv 231 (396)
T TIGR03528 161 ECTITDL-NYDDA------VRLAWKMAQEN-GWVMVQDTAWEGYEKIPTWIMQGYGTLALEALEQLKEQG-VEKPTHVFL 231 (396)
T ss_pred EEEEECC-CHHHH------HHHHHHHHHhc-CcEeeccccccccccCchHHHHHHhHHHHHHHHHHhhcC-CCCCCEEEE
Confidence 9999986 35432 22344444432 3465532 3333 5567899999999999996311 126999999
Q ss_pred cCCchhHHHHHHHHHh-cCCCC-CeEEEEeeCCCCccchH-------------hHHHHhhcccCC-----------CCCC
Q 019410 253 ACGSGGTIAGLSLGSW-LGTLK-AKVHAFSVCDDPDYFYD-------------YTQGLLDGLNAG-----------VDSR 306 (341)
Q Consensus 253 ~vGtGGt~aGl~~~~k-~~~~~-~rVigVe~~g~~~~~~~-------------~i~~l~~~~~~~-----------~~~~ 306 (341)
|+|+||++.|++.+++ ...++ ++||+||+++....... ....+++++... -..+
T Consensus 232 pvG~Ggl~~gi~~~~~~~~~~~~p~vi~Vep~~a~~l~~s~~~~~g~~~~~~g~~~Tiadgl~~~~p~~~~~~~~~~~~d 311 (396)
T TIGR03528 232 QAGVGSFAGAVQGYFASAYGEERPITVIVEPDAADCLYRSAIADDGKPHFVTGDMATIMAGLACGEPNTIGWEILRDYAS 311 (396)
T ss_pred cCCcchHHHHHHHHHHHhcCCCCCEEEEEccCCCchHHHHHHhcCCCEEEeCCCccceecccccCCccHHHHHHHHHhCC
Confidence 9999999999999884 34455 49999999886543211 122355555421 1368
Q ss_pred ceEEeccchHHHHHHHHHHHH
Q 019410 307 DIVNIQNVSVYMTFKNILMNI 327 (341)
Q Consensus 307 ~iv~v~d~~~~~~~~~~~~~~ 327 (341)
+++.|+|.+++..++.++..+
T Consensus 312 ~~v~VsD~ei~~a~r~La~~~ 332 (396)
T TIGR03528 312 QFISCPDWVAAKGMRILGNPL 332 (396)
T ss_pred eEEEECHHHHHHHHHHHhccc
Confidence 999999999999999887543
No 70
>PLN02618 tryptophan synthase, beta chain
Probab=100.00 E-value=1.5e-31 Score=264.77 Aligned_cols=203 Identities=19% Similarity=0.131 Sum_probs=151.8
Q ss_pred ccccCcC-CCcccccCCCCCCC--------CceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHH
Q 019410 39 VFSLGHF-PTPIHKWNLPNLPH--------NTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKL 109 (341)
Q Consensus 39 ~~~~~~~-~TPl~~~~l~~L~~--------g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl 109 (341)
+++...+ ||||++ +++|++ |++||+| |||+++ +||||+|.+
T Consensus 58 ~l~~~vGr~TPL~~--~~~Ls~~~g~~~~~g~~IylK--------------------------~E~lnp--tGS~K~R~a 107 (410)
T PLN02618 58 ILKDYVGRETPLYF--AERLTEHYKRADGEGPEIYLK--------------------------REDLNH--TGAHKINNA 107 (410)
T ss_pred HHHHhcCCCCceeE--hhhHHHHhccccCCCCEEEEE--------------------------eCCCCC--ccchHHHHH
Confidence 4445564 999999 777765 4899999 888875 689999998
Q ss_pred HHHHHHHHHcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCc--c
Q 019410 110 EFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKE--E 187 (341)
Q Consensus 110 ~~ll~~A~~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~--~ 187 (341)
...+..|++.|++++|+. +++||||+|+|++|+++|++|+||||..... . ...|+.+|++|||+|+.++.+ .
T Consensus 108 ~~~~l~A~~~g~~~vIae-sgaGNhG~AlA~aaa~~Gl~~~I~m~~~~~~-~----~~~nv~~mr~lGA~Vi~v~~g~~~ 181 (410)
T PLN02618 108 VAQALLAKRLGKKRIIAE-TGAGQHGVATATVCARFGLECIVYMGAQDME-R----QALNVFRMRLLGAEVRPVHSGTAT 181 (410)
T ss_pred HHHHHHHHHcCCCEEEEE-cCcHHHHHHHHHHHHHcCCcEEEEEcCCchh-h----hhhhHHHHHHCCCEEEEEeCCCCC
Confidence 888888888898888865 3359999999999999999999999985321 1 245889999999999999531 2
Q ss_pred ccccCcHHHHHHHHHHHHHhCCCcEEeCCC--CCchh---HHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHH
Q 019410 188 YSKIGSVTLTNILKEKLLKEGRRPYVIPVG--GSNSI---GTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAG 262 (341)
Q Consensus 188 ~~~~~~~~~~~~~a~~l~~~g~~~~~ip~g--~~n~~---~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aG 262 (341)
+.+ ...+..+++.++....+++..+ +++|. ...++.+++.||.+|+.+. .+..||+||+|+|+||+++|
T Consensus 182 ~~d-----A~~ea~~~~~~~~~~~~yi~gs~~gp~P~~~~v~~~q~tig~Ei~~Q~~~~-~g~~pD~VV~~VGgGg~~~G 255 (410)
T PLN02618 182 LKD-----ATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHSVIGKETRRQAMEK-WGGKPDVLVACVGGGSNAMG 255 (410)
T ss_pred HHH-----HHHHHHHHHHhccCCCEEEecCcCCCCCCHHHHHHhhHHHHHHHHHHHHHH-hCCCCCEEEEEeCchHHHHH
Confidence 322 2222233344432234555322 22332 3468889999999998321 23469999999999999999
Q ss_pred HHHHHhcCCCCCeEEEEeeCCC
Q 019410 263 LSLGSWLGTLKAKVHAFSVCDD 284 (341)
Q Consensus 263 l~~~~k~~~~~~rVigVe~~g~ 284 (341)
++.+|+. ++++||||||+.+.
T Consensus 256 i~~~f~~-~~~v~ligVEa~G~ 276 (410)
T PLN02618 256 LFHEFID-DEDVRLIGVEAAGF 276 (410)
T ss_pred HHHHHHh-CCCceEEEEEeCCC
Confidence 9999975 68999999999986
No 71
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=2.4e-31 Score=276.96 Aligned_cols=255 Identities=17% Similarity=0.157 Sum_probs=178.6
Q ss_pred CCCchhhcCCCCCcccccCcC-CCcccccCCCCCCC--------CceEEEeeCCCCCCccccCccchhhHhhhhhccccc
Q 019410 25 PPSWASHLAPIPSHVFSLGHF-PTPIHKWNLPNLPH--------NTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDD 95 (341)
Q Consensus 25 ~p~~~~~~~~~~~~~~~~~~~-~TPl~~~~l~~L~~--------g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~RED 95 (341)
.|.|...|..+- ...++ ||||++ +++|++ |++||+| |||
T Consensus 308 ~~~f~~e~~~~~----~~~iGrpTPL~~--~~~Ls~~l~~~~G~g~~IylK--------------------------~E~ 355 (695)
T PRK13802 308 DPEFHKELATLN----QRYVGRPSPLTE--APRFAERVKEKTGLDARVFLK--------------------------RED 355 (695)
T ss_pred CHHHHHHHHHHH----HhcCCCCCceeE--chhhhhhhHhhcCCCceEEEE--------------------------Ecc
Confidence 444555554433 22345 999999 677652 3799999 888
Q ss_pred ccCCCCCchHhHHHHHHHHHHHHcCCCeEE-EeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHH
Q 019410 96 LSGMQLSGNKVRKLEFLMADAVAQGADCII-TIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVER 174 (341)
Q Consensus 96 l~~~~~ggnK~Rkl~~ll~~A~~~g~~~vV-t~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~ 174 (341)
+++ +||||+|.+..++..|++.|++.+| ++ ++||||+|+|++|+++|++|+||||...... ...|+.+|+
T Consensus 356 lNp--TGS~KdR~Al~~i~~A~~~G~~~~Ivet--ssGNhG~AlA~aaA~~Gl~c~Ivmp~~~~~~-----~~~nv~~mr 426 (695)
T PRK13802 356 LNH--TGAHKINNALGQALLVKRMGKTRVIAET--GAGQHGVATATVCAMLGLKCRIYMGQIDARR-----QALNVARMR 426 (695)
T ss_pred CCC--cCCcHHHHHHHHHHHHHHcCCCCEEEEE--CcHHHHHHHHHHHHHcCCCEEEEEeCCcccc-----cHHHHHHHH
Confidence 865 6899999999999999999987544 54 4599999999999999999999999754211 246899999
Q ss_pred hCCCEEEEECCccccccCcHHHHHHHHHHHHHhCC-CcEEeCCC-CCchh---HHHHHHHHHHHHHHHHhcCCCC-CCCC
Q 019410 175 LVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGR-RPYVIPVG-GSNSI---GTWGYIEAIKEIEQQLQTGTGG-VKFD 248 (341)
Q Consensus 175 ~~GAeV~~v~~~~~~~~~~~~~~~~~a~~l~~~g~-~~~~ip~g-~~n~~---~~~G~~t~a~EI~~Ql~~~~~g-~~~D 248 (341)
+|||+|+.++.+.. ...+...+.++++.++.+ ..|+++.. +.+|. ...|+.++|.||++|+.+. .+ ..||
T Consensus 427 ~lGAeVi~v~~g~~---~l~~Ai~ea~~~~~~~~~~~~y~i~~~~g~~P~p~~v~agq~tiG~EI~eQ~~~~-~g~~~pD 502 (695)
T PRK13802 427 MLGAEVVEVTLGDR---ILKDAINEALRDWVTNVKDTHYLLGTVAGPHPFPAMVRDFQKIIGEEAKQQLQDW-YGIDHPD 502 (695)
T ss_pred HcCCEEEEECCCCC---cHHHHHHHHHHHHHHhcCCceEeecccCCCCCcHHHHHHHHHHHHHHHHHHHhcc-cCCCCCC
Confidence 99999999984321 011222233344443322 33555433 23443 3378999999999999631 12 2699
Q ss_pred EEEEcCCchhHHHHHHHHHhcCCCCCeEEEEeeCCCCccchHhHHHHhhcccC-----------------------C---
Q 019410 249 DIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDYTQGLLDGLNA-----------------------G--- 302 (341)
Q Consensus 249 ~Ivv~vGtGGt~aGl~~~~k~~~~~~rVigVe~~g~~~~~~~~i~~l~~~~~~-----------------------~--- 302 (341)
+||+|+||||+++|++.+|+. .+++|||||++.+.......+...+.++.+. +
T Consensus 503 ~VVa~VGgGg~~~Gi~~~f~~-~~~vkligVE~~g~g~~~g~h~~~~~~g~g~~g~~~g~~~~~~~~~~g~~~~~~sis~ 581 (695)
T PRK13802 503 AICACVGGGSNAIGVMNAFLD-DERVNLYGYEAGGNGPESGKHAIRFAPGTGELGMFQGAKSYLLENDEGQTLDTYSISA 581 (695)
T ss_pred EEEEcCCchHHHHHHHHHHHh-CCCceEEEEEecCCCccccchhhhhhhccCCccccccceeecccCCCCCccCcccccc
Confidence 999999999999999999976 6899999999998754443333333332211 0
Q ss_pred -C-------------CCCce--EEeccchHHHHHHHHHH
Q 019410 303 -V-------------DSRDI--VNIQNVSVYMTFKNILM 325 (341)
Q Consensus 303 -~-------------~~~~i--v~v~d~~~~~~~~~~~~ 325 (341)
+ ..+.+ +.|+|.++..+++.++.
T Consensus 582 gLdy~gvgp~~~~l~~~~rv~~~~vtD~eal~a~~~La~ 620 (695)
T PRK13802 582 GLDYASVGPEHAWLKDIGRVNYSWATDEEAMNAFKDLCE 620 (695)
T ss_pred ccCCCCCCchhHHHHhcCCeEEEEECHHHHHHHHHHHHH
Confidence 0 03344 89999999999888876
No 72
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=100.00 E-value=3.3e-31 Score=260.15 Aligned_cols=241 Identities=17% Similarity=0.149 Sum_probs=170.0
Q ss_pred cCCCcccccCCCCCCC---CceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHHHHHHcC
Q 019410 44 HFPTPIHKWNLPNLPH---NTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMADAVAQG 120 (341)
Q Consensus 44 ~~~TPl~~~~l~~L~~---g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~~A~~~g 120 (341)
..+|||++ +++|++ +.+||+| +||+++ +||||+|.+..++..|.++|
T Consensus 32 ~~~TPL~~--l~~l~~~~g~~~l~~K--------------------------~E~~np--tgS~K~R~a~~~~~~a~~~g 81 (365)
T cd06446 32 GRPTPLYR--AKRLSEYLGGAKIYLK--------------------------REDLNH--TGAHKINNALGQALLAKRMG 81 (365)
T ss_pred CCCCCcee--hHHHHHhhCCceEEEE--------------------------eccCCC--ccchhHHHHHHHHHHHHHcC
Confidence 35999999 787765 5799999 566543 57789999999999999999
Q ss_pred CCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCccccccCcHHHHHHH
Q 019410 121 ADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNIL 200 (341)
Q Consensus 121 ~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~ 200 (341)
++.+|+.+ ++||||+|+|++|+.+|++|+||||...+.. ...|+.+++++||+|+.++.. +.. ..+.+...
T Consensus 82 ~~~vv~~~-ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~-----~~~~~~~~~~~GAeV~~~~~~-~~~--~~~~~~~a 152 (365)
T cd06446 82 KKRVIAET-GAGQHGVATATACALFGLECEIYMGAVDVER-----QPLNVFRMELLGAEVVPVPSG-SGT--LKDAISEA 152 (365)
T ss_pred CCeEEEec-CchHHHHHHHHHHHHhCCCeEEEEcCCcccc-----ccchHHHHHHCCCEEEEeCCC-CCc--HHHHHHHH
Confidence 98888753 5599999999999999999999999764311 135788999999999999853 210 01122222
Q ss_pred HHHHHHhC-CCcEEeCCC-CCch---hHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcCCCCCe
Q 019410 201 KEKLLKEG-RRPYVIPVG-GSNS---IGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAK 275 (341)
Q Consensus 201 a~~l~~~g-~~~~~ip~g-~~n~---~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~~~~~r 275 (341)
++.+.++. ...|++... ++++ ....||.+++.||++|+.+. .+..||+||+|+|||||++|++.+++. .+++|
T Consensus 153 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ag~~t~~~EI~~Q~~~~-~~~~~D~vv~~vG~GGt~~Gi~~g~~~-~~~~~ 230 (365)
T cd06446 153 IRDWVTNVEDTHYLLGSVVGPHPYPNMVRDFQSVIGEEAKKQILEK-EGELPDVVIACVGGGSNAAGLFYPFIN-DKDVK 230 (365)
T ss_pred HHHHHhccCCceEecccccCCCCchHHHHHhhhHHHHHHHHHHHHh-cCCCCCEEEEecCccHHHHHHHHHHHh-CCCce
Confidence 33333321 234443211 1122 23578999999999999731 013699999999999999999998876 46899
Q ss_pred EEEEeeCCCCccchHhH-------------------H----------HHhhcccC-----------CCCCCceEEeccch
Q 019410 276 VHAFSVCDDPDYFYDYT-------------------Q----------GLLDGLNA-----------GVDSRDIVNIQNVS 315 (341)
Q Consensus 276 VigVe~~g~~~~~~~~i-------------------~----------~l~~~~~~-----------~~~~~~iv~v~d~~ 315 (341)
||||++.++......++ . .+++++.. ....++++.|.|.+
T Consensus 231 vigVep~gs~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~d~~v~V~d~e 310 (365)
T cd06446 231 LIGVEAGGCGLETGGHAAYLFGGTAGVLHGLKMYTLQDEDGQIVPPHSISAGLDYPGVGPEHAYLKDSGRVEYVAVTDEE 310 (365)
T ss_pred EEEEcCCCCccccccceeeccCCCcceecchhhhccccccCCCCCcccccccccCCCCCHHHHHHHHhCCceEEEeChHH
Confidence 99999998765421100 0 11112221 11246899999999
Q ss_pred HHHHHHHHHH
Q 019410 316 VYMTFKNILM 325 (341)
Q Consensus 316 ~~~~~~~~~~ 325 (341)
++..++.++.
T Consensus 311 ~~~a~r~la~ 320 (365)
T cd06446 311 ALEAFKLLAR 320 (365)
T ss_pred HHHHHHHHHH
Confidence 9999888875
No 73
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=99.98 E-value=4.5e-31 Score=262.93 Aligned_cols=245 Identities=16% Similarity=0.128 Sum_probs=172.1
Q ss_pred cccCcCCCcccccCCCCCCC--C--ceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHHH
Q 019410 40 FSLGHFPTPIHKWNLPNLPH--N--TEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMAD 115 (341)
Q Consensus 40 ~~~~~~~TPl~~~~l~~L~~--g--~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~~ 115 (341)
+.+...+|||++ +++|++ | ++||+| +|++++ +||||+|.+..++..
T Consensus 62 ~~l~g~pTPL~r--~~~L~~~lg~~~~Iy~K--------------------------~E~~nP--tGS~K~R~A~~~~~~ 111 (419)
T TIGR01415 62 YAQIGRPTPLIR--AKGLEELLGTPARIYYK--------------------------YESVSP--TGSHKINTAIAQAYY 111 (419)
T ss_pred HHhcCCCCCeEE--ccchhhhhCCCceEEEE--------------------------ECCCCC--CCCcHHHHHHHHHHH
Confidence 455657999999 788876 4 699999 555542 578899999999999
Q ss_pred HHHcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCccccccCcHH
Q 019410 116 AVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVT 195 (341)
Q Consensus 116 A~~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~~~~ 195 (341)
+.++|.+++||. .++||||+|+|++|+.+|++|+||||...+..+ ..++.+|++|||+|+.++.+ +++..+..
T Consensus 112 a~~~G~~~~vte-tssGN~G~alA~aaa~~Gl~~~V~mp~~s~~~k-----~~k~~~m~~~GA~Vi~~~~~-~~~~~r~~ 184 (419)
T TIGR01415 112 AKIEGAKRLVTE-TGAGQWGSALSLAGALFGLECKVFMVRVSFNQK-----PYRKYLMELYGAEVIPSPSE-FTEFGREV 184 (419)
T ss_pred HHHcCCCeEEEe-cCchHHHHHHHHHHHHcCCcEEEEEeCCCcccC-----HHHHHHHHHcCCEEEEECCc-hhhHHHHh
Confidence 999999999975 345999999999999999999999997553211 24689999999999999863 43221100
Q ss_pred -------------HHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHH
Q 019410 196 -------------LTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAG 262 (341)
Q Consensus 196 -------------~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aG 262 (341)
.+.+..+...++++..|+ +.+..|+. ..|+.+++.||++|+.. .+..||+||+|+|+||+++|
T Consensus 185 ~~~~p~~~gsl~~ai~~a~e~a~~~~~~~y~-~~~~~n~~-~~h~~~ig~Ei~~Ql~~--~g~~pD~vv~~vG~Gg~~~G 260 (419)
T TIGR01415 185 LKEDPDHPGSLGIAISEAIEYALSDEDTKYS-LGSVLNHV-LLHQTVIGLEAKKQMEE--AGEDPDVIIGCVGGGSNFAG 260 (419)
T ss_pred hhcccccccchHHHHHHHHHHHHhCCCCEEE-eCCCCcHH-HHHHHHHHHHHHHHHHh--cCCCCCEEEEEeCchHHHHH
Confidence 122223222232323354 44444443 44778999999999973 23469999999999999999
Q ss_pred HHHHHh---cCC-CCCeEEEEeeCCCCccch----------------HhHHHHhhcccCC-C------------------
Q 019410 263 LSLGSW---LGT-LKAKVHAFSVCDDPDYFY----------------DYTQGLLDGLNAG-V------------------ 303 (341)
Q Consensus 263 l~~~~k---~~~-~~~rVigVe~~g~~~~~~----------------~~i~~l~~~~~~~-~------------------ 303 (341)
++.+|. ..+ +++|||+||+++.+.... .++.++..++.+. +
T Consensus 261 i~~~f~~~~l~g~~~~rviaVep~~~~~l~~g~~~yd~~~~~~~~p~~~~~~lG~~~~p~~~~a~gl~~~~~~~~~~~l~ 340 (419)
T TIGR01415 261 LAFPFVADKLSGKIDRRFIAAEPKACPTLTRGEYRYDFGDTAGLTPLLKMYTLGHDFIPPPIHAGGLRYHGVAPTLSLLV 340 (419)
T ss_pred HHHHHHHHHhcCCCCCEEEEEeeCCChhhhcCcccccccccccCCcceeeeecCCCCCCcceeccccccCCccHHHHHHh
Confidence 998873 223 589999999988643221 1122233333221 0
Q ss_pred --CCCceEEeccchHHHHHHHHHH
Q 019410 304 --DSRDIVNIQNVSVYMTFKNILM 325 (341)
Q Consensus 304 --~~~~iv~v~d~~~~~~~~~~~~ 325 (341)
...+++.|+|.+++...+.++.
T Consensus 341 ~~~~~~~~~V~d~e~~~a~r~la~ 364 (419)
T TIGR01415 341 NLGIVEARAYDQEEAFEAAVIFAK 364 (419)
T ss_pred hcCceEEEEECHHHHHHHHHHHHH
Confidence 1235788999999999888774
No 74
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=99.98 E-value=1.2e-31 Score=255.26 Aligned_cols=234 Identities=25% Similarity=0.309 Sum_probs=172.0
Q ss_pred cccCcCCCcccccCCC--CCCC--CceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHHH
Q 019410 40 FSLGHFPTPIHKWNLP--NLPH--NTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMAD 115 (341)
Q Consensus 40 ~~~~~~~TPl~~~~l~--~L~~--g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~~ 115 (341)
+++++++|||++ ++ .+++ +.+||+| |||++ + +||||+|++.+++.+
T Consensus 1 i~~~~~~TPl~~--~~~~~~~~~~~~~i~~K--------------------------~E~~~-p-tgs~K~R~a~~~l~~ 50 (306)
T PF00291_consen 1 ISLGIGPTPLVR--LPSRLLSELGGANIYLK--------------------------REDLN-P-TGSFKDRGAYYLLSR 50 (306)
T ss_dssp GGGGSSSS-EEE--EHEHHHHHCTTSEEEEE--------------------------EGGGS-T-TSBTHHHHHHHHHHH
T ss_pred CcCCCcCCCEEE--CccccchhccCCeEEEE--------------------------ECCCC-C-cCCcccccchhhhhh
Confidence 467889999999 43 2222 7899999 88887 3 899999999999999
Q ss_pred HHHcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCccccccCcHH
Q 019410 116 AVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVT 195 (341)
Q Consensus 116 A~~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~~~~ 195 (341)
|+++|.++|+. +++||||+|+|++|+.+|++|++|+|.+.+ ..|+++++.+||+|+.++.. ++.. .+
T Consensus 51 a~~~~~~~vv~--assGN~g~a~A~~a~~~g~~~~i~~p~~~~--------~~~~~~~~~~Ga~v~~~~~~-~~~~--~~ 117 (306)
T PF00291_consen 51 AKEKGGRTVVG--ASSGNHGRALAYAAARLGLKCTIVVPEDVS--------PEKLKQMRALGAEVILVPGD-VEGA--FD 117 (306)
T ss_dssp HHHTTTSEEEE--ESSSHHHHHHHHHHHHHTCEEEEEEETTSH--------HHHHHHHHHTTCEEEEESST-HHHH--HH
T ss_pred ccccccceeee--eccCCceehhhhhhhhccccceeeeccccc--------cccccceeeecceEEEcccc-cccc--cc
Confidence 99999898875 577999999999999999999999998864 45899999999999998763 2211 11
Q ss_pred HHHHHHHH----HHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhc--
Q 019410 196 LTNILKEK----LLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWL-- 269 (341)
Q Consensus 196 ~~~~~a~~----l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~-- 269 (341)
.+.+++++ +... ... +..+ .|+....||.+++.||.+|+.. .++|+||+|+|||||++|++.+++.
T Consensus 118 ~~~~~~~~~~~~~~~~--~~~-~~~~-~~~~~~~g~~~~~~Ei~~q~~~----~d~d~vvv~~GtGg~~~Gi~~~~~~~~ 189 (306)
T PF00291_consen 118 DAQELAKERAELLSPF--NGE-LNQY-NNPNVIAGYATIGLEIYEQLGK----PDPDYVVVPVGTGGTAAGIAAGLKELI 189 (306)
T ss_dssp HHHHHHHHHHHHHHHS--TTE-ESTT-TSHHHHHHHHHHHHHHHHHHTT----ESESEEEEEESSSHHHHHHHHHHHHHC
T ss_pred cccccccccccccccc--ccc-cCcc-cchhhhhhhhhcchhccccccc----ccceEEEecCCchhHHHHHHhhhhhhh
Confidence 11222222 2211 112 3333 6788899999999999999951 2234599999999999999999999
Q ss_pred CCCCCeEEEEeeCCCCccchHhHH----------HHhhcccCCC-------------CCCceEEeccchHHHHHHHHHHH
Q 019410 270 GTLKAKVHAFSVCDDPDYFYDYTQ----------GLLDGLNAGV-------------DSRDIVNIQNVSVYMTFKNILMN 326 (341)
Q Consensus 270 ~~~~~rVigVe~~g~~~~~~~~i~----------~l~~~~~~~~-------------~~~~iv~v~d~~~~~~~~~~~~~ 326 (341)
. ++++||+|++.++.... +... ....++.... ..++++.|.|.+.+.+++.++..
T Consensus 190 ~-~~~~vigv~~~~~~~~~-~~~~~g~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~ 267 (306)
T PF00291_consen 190 L-PPVRVIGVEPEGSDPLY-RSFKAGKPIRLPGESTIAGLGVPMPFPGELDLELIDEYVGDVVGVSDEEALEAIRELAER 267 (306)
T ss_dssp H-TTSEEEEEEETTGHHHH-HHHHHTSCEHSSCHHSSTGGTSSSCTTTTHHHHHHHHETEEEEEEEHHHHHHHHHHHHHH
T ss_pred c-ccccceeeeccCCcccc-ccccccccccccceeeeecccCCccchhhhhhhhhhhccccccccchHHHHHHHHHHHHH
Confidence 7 89999999997764322 1000 1122333322 12356899999999998887653
No 75
>PLN02569 threonine synthase
Probab=99.97 E-value=9.2e-31 Score=264.62 Aligned_cols=230 Identities=14% Similarity=0.087 Sum_probs=174.0
Q ss_pred ccccCcCCCcccccCCCCCCC---C-ceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHH
Q 019410 39 VFSLGHFPTPIHKWNLPNLPH---N-TEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMA 114 (341)
Q Consensus 39 ~~~~~~~~TPl~~~~l~~L~~---g-~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~ 114 (341)
.++++.++|||++ +++|++ | .+||+| +|++||+ ||||||++..++.
T Consensus 126 ~vsl~eG~TPLv~--~~~l~~~~~G~~~l~~K-------~E~~nPT---------------------GSFKDRga~~~vs 175 (484)
T PLN02569 126 IVSLFEGNSNLFW--AERLGKEFLGMNDLWVK-------HCGISHT---------------------GSFKDLGMTVLVS 175 (484)
T ss_pred ceecCCCCCceeE--hhhhhHhhcCCccEEEE-------ECCCCCC---------------------cCHHHHHHHHHHH
Confidence 4889999999999 777754 4 389999 8888885 5569999999999
Q ss_pred HHHHcCC-----CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCC-CCCcCCCCCcchhHHHHHhCCCEEEEECCccc
Q 019410 115 DAVAQGA-----DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTS-KVLVDQDPGLIGNLLVERLVGAHIELISKEEY 188 (341)
Q Consensus 115 ~A~~~g~-----~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~-~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~ 188 (341)
.+.+.|. .+||+ +|+||||.|+|++|+.+|++|+||||.. .+ ..++.++++|||+|+.++. .|
T Consensus 176 ~a~~~g~~~~~~~~Vv~--ASSGN~GaAlAayaa~~Gl~~~I~vP~~~~~--------~~k~~qi~a~GA~Vi~v~g-~~ 244 (484)
T PLN02569 176 QVNRLRKMAKPVVGVGC--ASTGDTSAALSAYCAAAGIPSIVFLPADKIS--------IAQLVQPIANGALVLSIDT-DF 244 (484)
T ss_pred HHHHhhhccCCccEEEE--eCCcHHHHHHHHHHHhcCCeEEEEEcCCCCC--------HHHHHHHHhcCCEEEEECC-CH
Confidence 9887664 55765 4779999999999999999999999986 43 3579999999999999986 46
Q ss_pred cccCcHHHHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHh
Q 019410 189 SKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSW 268 (341)
Q Consensus 189 ~~~~~~~~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k 268 (341)
++. .++++++.++. ..|+++. . ||..++||.|++.||++|++. ..||+||+|+|+||+++|++++|+
T Consensus 245 d~a------~~~a~e~~~~~-~~~~~n~-~-Np~~ieG~kT~a~EI~eQl~~----~~pD~VvvPvG~Gg~l~Gi~kgfk 311 (484)
T PLN02569 245 DGC------MRLIREVTAEL-PIYLANS-L-NSLRLEGQKTAAIEILQQFDW----EVPDWVIVPGGNLGNIYAFYKGFK 311 (484)
T ss_pred HHH------HHHHHHHHHHc-CCEecCC-C-CcchhHhHHHHHHHHHHHcCC----CCCCEEEEeCCchHHHHHHHHHHH
Confidence 542 23344444432 3465543 3 999999999999999999862 349999999999999999999998
Q ss_pred cC------CCCCeEEEEeeCCCCccchHh------------HHHHhhcccCCC-------------CCCceEEeccchHH
Q 019410 269 LG------TLKAKVHAFSVCDDPDYFYDY------------TQGLLDGLNAGV-------------DSRDIVNIQNVSVY 317 (341)
Q Consensus 269 ~~------~~~~rVigVe~~g~~~~~~~~------------i~~l~~~~~~~~-------------~~~~iv~v~d~~~~ 317 (341)
++ .+.+|||+|++++........ ...+++++.... ....++.|+|.+++
T Consensus 312 el~~~G~i~~~Priv~Vqa~g~~pl~~a~~~G~~~~~~~~~~~T~A~gi~i~~P~~~~~~l~al~~s~g~~v~VsDeEi~ 391 (484)
T PLN02569 312 MCKELGLVDRLPRLVCAQAANANPLYRAYKSGWEEFKPVKANPTFASAIQIGDPVSIDRAVYALKESNGIVEEATEEELM 391 (484)
T ss_pred HHHHcCCCCCCCeEEEEeeCCCcHHHHHHHcCCCccccCCCCCccchhhccCCCccHHHHHHHHHHhCCEEEEECHHHHH
Confidence 74 245699999999864322110 011223322211 02346999999998
Q ss_pred HHHHH
Q 019410 318 MTFKN 322 (341)
Q Consensus 318 ~~~~~ 322 (341)
...+.
T Consensus 392 ~a~~~ 396 (484)
T PLN02569 392 DAQAE 396 (484)
T ss_pred HHHHH
Confidence 88876
No 76
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=99.97 E-value=2e-30 Score=258.64 Aligned_cols=241 Identities=15% Similarity=0.086 Sum_probs=168.7
Q ss_pred cCCCcccccCCCCCCC--C--ceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHHHHHHc
Q 019410 44 HFPTPIHKWNLPNLPH--N--TEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMADAVAQ 119 (341)
Q Consensus 44 ~~~TPl~~~~l~~L~~--g--~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~~A~~~ 119 (341)
.+||||++ +++|++ | ++||+| +|++++ +||||+|++..++..+.++
T Consensus 75 ~~~TPL~~--~~~L~~~lg~~~~Iy~K--------------------------~E~~nP--tGS~K~R~A~~~a~~a~~~ 124 (427)
T PRK12391 75 WRPTPLIR--ARRLEKALGTPAKIYYK--------------------------YEGVSP--TGSHKPNTAVAQAYYNKKE 124 (427)
T ss_pred cCCCCeeE--chhhHhhhCCCceEEEE--------------------------EcCCCC--CCChHHHHHHHHHHHHHHC
Confidence 36999999 788766 4 699999 555542 5788999999999999999
Q ss_pred CCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCccccccCcH-----
Q 019410 120 GADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSV----- 194 (341)
Q Consensus 120 g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~~~----- 194 (341)
|.++++|. +++||||+|||++|+.+|++|+||||......+ ..+..+|++|||+|+.++.. +++.++.
T Consensus 125 G~~~~vte-tgsGN~G~alA~aaa~~Gl~~~V~mp~~s~~~k-----~~r~~~mr~~GA~Vi~~~~~-~~~~~~~~~~~~ 197 (427)
T PRK12391 125 GIKRLTTE-TGAGQWGSALALACALFGLECTVFMVRVSYEQK-----PYRRSLMETYGAEVIPSPSD-LTEAGRKILAED 197 (427)
T ss_pred CCCEEEEc-cCchHHHHHHHHHHHHcCCcEEEEEecCCcccC-----HHHHHHHHHCCCEEEEECCc-hhhhhhhhhhcC
Confidence 99988875 345999999999999999999999996432211 24688999999999999853 3221110
Q ss_pred --------HHHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHH
Q 019410 195 --------TLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLG 266 (341)
Q Consensus 195 --------~~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~ 266 (341)
..+.+.++...+.+...|+++.. .| ....|+.+++.||.+|+.. .+..||+||+|+|+||+++|++.+
T Consensus 198 ~~~~gsl~~ai~~A~e~a~~~~~~~y~~~s~-~~-~~~~~~~~ig~Ei~~Ql~~--~g~~pD~Vv~~vG~Gg~~aGi~~~ 273 (427)
T PRK12391 198 PDHPGSLGIAISEAVEDAAKRPDTKYALGSV-LN-HVLLHQTVIGLEAKKQLEL--AGEYPDVVIGCVGGGSNFAGLAFP 273 (427)
T ss_pred ccccccHHHHHHHHHHHHHhCCCcEEEcCCC-Cc-HHHhhHHHHHHHHHHHHHh--cCCCCCEEEEecCchHHHHHHHHH
Confidence 01222233323322223544332 22 2356888999999999963 234699999999999999999987
Q ss_pred H---hcCC-CCCeEEEEeeCCCCccch----------------HhHHHHhhcccCC-C--------------------CC
Q 019410 267 S---WLGT-LKAKVHAFSVCDDPDYFY----------------DYTQGLLDGLNAG-V--------------------DS 305 (341)
Q Consensus 267 ~---k~~~-~~~rVigVe~~g~~~~~~----------------~~i~~l~~~~~~~-~--------------------~~ 305 (341)
+ +..+ +++|||||++.+.+.... .++.++..++.+. + ..
T Consensus 274 f~~~~~~g~~~~riiaVEp~~~~~l~~g~~~~~~gd~~~~~p~~~~~~lG~~~~p~~~~a~gl~~~g~~~~~~~l~~~~~ 353 (427)
T PRK12391 274 FLGDKLEGKKDTRFIAVEPAACPTLTKGEYAYDFGDTAGLTPLLKMYTLGHDFVPPPIHAGGLRYHGMAPLVSLLVHEGL 353 (427)
T ss_pred HHHHHhcCCCCceEEEEeeccchhhccccccccccccccCCccceeEecCCCCCCccccccccccCCchHHHHHHHhcCc
Confidence 7 3346 889999999987654221 1122222222221 0 12
Q ss_pred CceEEeccchHHHHHHHHHH
Q 019410 306 RDIVNIQNVSVYMTFKNILM 325 (341)
Q Consensus 306 ~~iv~v~d~~~~~~~~~~~~ 325 (341)
.+++.|.|.+++...+.++.
T Consensus 354 ~~~~~V~d~e~~~a~~~~a~ 373 (427)
T PRK12391 354 IEARAYPQTEVFEAAVLFAR 373 (427)
T ss_pred eEEEEECHHHHHHHHHHHHH
Confidence 36789999999998888774
No 77
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=99.97 E-value=2.2e-30 Score=268.86 Aligned_cols=201 Identities=18% Similarity=0.164 Sum_probs=150.8
Q ss_pred CcCCCcccccCCCCCCC--CceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHHHHHHcC
Q 019410 43 GHFPTPIHKWNLPNLPH--NTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMADAVAQG 120 (341)
Q Consensus 43 ~~~~TPl~~~~l~~L~~--g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~~A~~~g 120 (341)
...||||++ +++|++ |++||+| |||+++ +||||+|.+...+..|++.|
T Consensus 268 ~grpTPL~~--~~~Ls~~~G~~IylK--------------------------~E~lnp--tGS~K~r~al~~~~~a~~~g 317 (610)
T PRK13803 268 AGRPTPLTE--AKRLSDIYGARIYLK--------------------------REDLNH--TGSHKINNALGQALLAKRMG 317 (610)
T ss_pred CCCCCccee--HHHHHHhhCCEEEEE--------------------------eCCCCC--cccHHHHHHHHHHHHHHHcC
Confidence 446999999 788876 8899999 888875 68899999988888888899
Q ss_pred CCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCccccccCcHHHHHHH
Q 019410 121 ADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNIL 200 (341)
Q Consensus 121 ~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~ 200 (341)
.+++|+. +++||||+|+|++|+++|++|+||||...+. . ...|+.+|+++||+|+.++.+.. . ..+.+.+.
T Consensus 318 ~~~vi~e-~gsGnhG~A~A~~aa~~Gl~~~I~m~~~~~~-~----~~~nv~~m~~~GA~Vi~v~~~~~-~--~~~a~~~a 388 (610)
T PRK13803 318 KTRIIAE-TGAGQHGVATATACALFGLKCTIFMGEEDIK-R----QALNVERMKLLGANVIPVLSGSK-T--LKDAVNEA 388 (610)
T ss_pred CCEEEEe-cChHHHHHHHHHHHHHcCCcEEEEEeCCccc-c----hhhHHHHHHHCCCEEEEECCCCC-C--HHHHHHHH
Confidence 8888754 2459999999999999999999999976421 1 24589999999999999985321 1 11222233
Q ss_pred HHHHHHhCCCcEEeCCC--CCc--hhHH-HHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcCCCCCe
Q 019410 201 KEKLLKEGRRPYVIPVG--GSN--SIGT-WGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAK 275 (341)
Q Consensus 201 a~~l~~~g~~~~~ip~g--~~n--~~~~-~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~~~~~r 275 (341)
.+++..+.++.++++.. +.+ |..+ .|+.+++.||.+|+.+. .+..||+||+|+||||+++|++.+|+. +++++
T Consensus 389 ~~~~~~~~~~~~y~~~~~~g~~p~p~~v~~~~~tig~Ei~~Q~~~~-~g~~pD~vV~~vGgGg~~~Gi~~~f~~-~~~v~ 466 (610)
T PRK13803 389 IRDWVASVPDTHYLIGSAVGPHPYPEMVAYFQSVIGEEAKEQLKEQ-TGKLPDAIIACVGGGSNAIGIFYHFLD-DPSVK 466 (610)
T ss_pred HHHHHHhCCCcEEEeCCcCCCCCcHHHHHHHhhHHHHHHHHHHHHh-hCCCCCEEEEEeCcCHhHHHHHHHHhh-CCCce
Confidence 33332222334444322 223 3333 47889999999999521 134699999999999999999999964 78999
Q ss_pred EEEEeeCCC
Q 019410 276 VHAFSVCDD 284 (341)
Q Consensus 276 VigVe~~g~ 284 (341)
|||||+.+.
T Consensus 467 iigVE~~g~ 475 (610)
T PRK13803 467 LIGVEAGGK 475 (610)
T ss_pred EEEEecCCC
Confidence 999999885
No 78
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=99.97 E-value=1.1e-30 Score=240.95 Aligned_cols=241 Identities=17% Similarity=0.152 Sum_probs=180.4
Q ss_pred cccCcCCCcccccCCCCCCC--CceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHHHHH
Q 019410 40 FSLGHFPTPIHKWNLPNLPH--NTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMADAV 117 (341)
Q Consensus 40 ~~~~~~~TPl~~~~l~~L~~--g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~~A~ 117 (341)
+-..+++|||++ +..|++ ||+|+.| +||.||+||. |||-+.++++.|+
T Consensus 43 v~~~IGnTplir--i~sLs~aTGcnIlaK-------~Ef~NPggS~---------------------KDRvAl~iir~Ae 92 (391)
T KOG1481|consen 43 VEGAIGNTPLIR--INSLSNATGCNILAK-------AEFLNPGGSV---------------------KDRVALYIIRTAE 92 (391)
T ss_pred hHHhhCCCceEE--eeccccccccchhhh-------hhccCCCCCh---------------------hhhhHHHHHHHHH
Confidence 345679999999 777877 9999999 9999998776 8999999999999
Q ss_pred HcCC---CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCccccccCc-
Q 019410 118 AQGA---DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGS- 193 (341)
Q Consensus 118 ~~g~---~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~~- 193 (341)
+.|. ...|+. |+.||+|+++|..|+.+|++|+|+||++.+ ..|...++.+||+|..|+...+.+...
T Consensus 93 e~GkL~~gg~v~E-GtaGsTgIslA~v~~a~Gyk~~I~mPddqs--------~eK~~ile~LGA~V~rV~pa~i~dp~~y 163 (391)
T KOG1481|consen 93 EKGKLVRGGTVVE-GTAGSTGISLAHVARALGYKCHIYMPDDQS--------QEKSDILEFLGAEVHRVPPAPIVDPNHY 163 (391)
T ss_pred HcCCcccCceEEe-cCCCccchhHHHhhhhcCcceEEECCChHH--------HHHHHHHHHhcceeeecCCcCccChhHH
Confidence 9884 344543 688999999999999999999999999875 357999999999999998644432211
Q ss_pred HHHHHHHHHHHHHh--CCCcEEeCCCCCchhHH-HHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcC
Q 019410 194 VTLTNILKEKLLKE--GRRPYVIPVGGSNSIGT-WGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLG 270 (341)
Q Consensus 194 ~~~~~~~a~~l~~~--g~~~~~ip~g~~n~~~~-~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~ 270 (341)
...+++.++++.+. +-+.| ...|+.|+.++ .+|.+++.||+.|.. +.+|++++++|||||++|+.+++|+.
T Consensus 164 vn~Arr~an~~~~~~ngi~g~-fAdQFeN~AN~~aHyetTGPEIw~Qtk-----GniDaFia~~GTGGTiaGVskyLkek 237 (391)
T KOG1481|consen 164 VNQARRAANETPNASNGIRGW-FADQFENVANWLAHYETTGPEIWHQTK-----GNIDAFIAGTGTGGTIAGVSKYLKEK 237 (391)
T ss_pred HHHHHHHhhhcccccCCcccc-hhhhhcCHHHHHHHhcCcCcHHHHhhc-----CCcceEEeccCCCcchHHHHHHHhhc
Confidence 11122333333322 11224 34577888886 489999999999997 58999999999999999999999987
Q ss_pred CCC-CeEEEEeeCCCCcc------------------chHhHHHHhhcccCC----------CCCCceEEeccchHHHHHH
Q 019410 271 TLK-AKVHAFSVCDDPDY------------------FYDYTQGLLDGLNAG----------VDSRDIVNIQNVSVYMTFK 321 (341)
Q Consensus 271 ~~~-~rVigVe~~g~~~~------------------~~~~i~~l~~~~~~~----------~~~~~iv~v~d~~~~~~~~ 321 (341)
.+. +.++-.++-|+..| ..++++.+..|++.. -..|+-..|.|.++..+.+
T Consensus 238 ~~~~v~~~laDPpGSGlYnkV~~GVmy~~~e~eG~r~r~q~dti~EGIGinRiT~Nf~m~~~liD~a~rv~Deqai~Msr 317 (391)
T KOG1481|consen 238 SDGRVAVFLADPPGSGLYNKVNYGVMYDHIETEGTRRRNQVDTITEGIGINRITGNFQMAEDLIDDAMRVTDEQAINMSR 317 (391)
T ss_pred CCCceEEEEeCCCCCchhhhhhhhhhhhhhhhcCcccCCCcchhhhcccccccccccccchhhhhhheecChHHHHHHHH
Confidence 554 55555555555322 123444455555531 1367889999999999888
Q ss_pred HHHH
Q 019410 322 NILM 325 (341)
Q Consensus 322 ~~~~ 325 (341)
.|+-
T Consensus 318 ~Ll~ 321 (391)
T KOG1481|consen 318 YLLD 321 (391)
T ss_pred Hhhh
Confidence 8754
No 79
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=99.96 E-value=7e-28 Score=238.83 Aligned_cols=238 Identities=12% Similarity=-0.003 Sum_probs=174.9
Q ss_pred ccCcCCCcccccCCCCCCC--Cc-eEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHHHHH
Q 019410 41 SLGHFPTPIHKWNLPNLPH--NT-EVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMADAV 117 (341)
Q Consensus 41 ~~~~~~TPl~~~~l~~L~~--g~-~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~~A~ 117 (341)
.+..+.|||++ .+.|++ |+ +||+| +|..||- +|++++ +||||+|++.+++..+.
T Consensus 57 ~~~~g~tpl~~--~~~L~~~lG~~~v~~K-------~e~~~~K------------~E~~np--TGSFKdRga~~~i~~a~ 113 (398)
T TIGR03844 57 LRTRGGPVTYK--SEGLARELGLSDLYIT-------FSGYWPE------------RGAFMR--TCSFKELEALPTMQRLK 113 (398)
T ss_pred CCCCCCCceee--hHHHHHHhCCCeEEEE-------ecCcccc------------hhccCC--ccccHHHHHHHHHHHHH
Confidence 34556799988 677765 77 99998 7776663 666653 78899999999999999
Q ss_pred HcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCccccccCcHHHH
Q 019410 118 AQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLT 197 (341)
Q Consensus 118 ~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~~~~~~ 197 (341)
+.|.+.||+. |+||||+|+|++|+++|++|+||||..++. . +...++.+||+|+.++. .|+++
T Consensus 114 ~~g~~~Vv~a--SsGN~g~alA~~aa~~Gi~~~I~vP~~~~~-------~-~~~~~~~~ga~vv~v~g-~~d~a------ 176 (398)
T TIGR03844 114 ERGGKTLVVA--SAGNTGRAFAEVSAITGQPVILVVPKSSAD-------R-LWTTEPASSVLLVTVDG-DYTDA------ 176 (398)
T ss_pred HcCCCEEEEE--CCCHHHHHHHHHHHHcCCcEEEEECCChHH-------H-HHHHhhCCcEEEEECCC-CHHHH------
Confidence 9998888874 679999999999999999999999987531 1 12234789999999986 46542
Q ss_pred HHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcC-------
Q 019410 198 NILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLG------- 270 (341)
Q Consensus 198 ~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~------- 270 (341)
.+.++++.++. + ++.+.+..||...+|+.|++.||++|++ ..||+||+|+|+|+...|++.+++++
T Consensus 177 ~~~a~~~a~~~-g-~~~~~~~~~p~~ieG~~Ti~~Ei~eql~-----~~PD~VvvPvG~G~~~~~~~~~~~~l~~~g~i~ 249 (398)
T TIGR03844 177 IALADRIATLP-G-FVPEGGARNVARRDGMGTVMLDAAVTIG-----SLPDHYFQAVGSGTGGIAAWEAAMRLIEDGRFG 249 (398)
T ss_pred HHHHHHHHHhC-C-ccccCCCCCHHHHhhHHHHHHHHHHHcC-----CCCCEEEEecCCCHHHHHHHHHHHHHHHcCCcc
Confidence 23344544432 2 4444555689999999999999999985 24899999999998899999888762
Q ss_pred CCCCeEEEEeeCCCCccchH------h---H-----------HHHhhcccCCC---------------CCCceEEeccch
Q 019410 271 TLKAKVHAFSVCDDPDYFYD------Y---T-----------QGLLDGLNAGV---------------DSRDIVNIQNVS 315 (341)
Q Consensus 271 ~~~~rVigVe~~g~~~~~~~------~---i-----------~~l~~~~~~~~---------------~~~~iv~v~d~~ 315 (341)
..-.|+++|++++....... . + +.+.+++.... ..+++|.|+|.+
T Consensus 250 ~~~P~l~~VQ~eg~~p~~~a~~~g~~~~~~~~~~~~~~~~~~~t~a~~l~i~~p~~~~~~~~l~air~~~g~~v~Vsd~e 329 (398)
T TIGR03844 250 SKLPRLHLAQNLPFVPMVNAWQEGRREIIPESDMPDAENSIEEVYSDVLTNRTPPYGVTGGVFDALIATGGQMYGVSNKE 329 (398)
T ss_pred CCCCCEEEEEcCCchHHHHHHHcCCCccccccCCccccccccceecceeeeCCCCcchHHHHHHHHHHhCCEEEEECHHH
Confidence 13358899999886532110 0 0 22344442110 135899999999
Q ss_pred HHHHHHHHHH
Q 019410 316 VYMTFKNILM 325 (341)
Q Consensus 316 ~~~~~~~~~~ 325 (341)
+...++.++.
T Consensus 330 I~~A~~~l~~ 339 (398)
T TIGR03844 330 AVSAGKLFEE 339 (398)
T ss_pred HHHHHHHHHh
Confidence 9988887664
No 80
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=99.89 E-value=2.9e-22 Score=198.04 Aligned_cols=235 Identities=20% Similarity=0.208 Sum_probs=176.6
Q ss_pred ccccCcCCCcccccCCCCCCC--C---ceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHH
Q 019410 39 VFSLGHFPTPIHKWNLPNLPH--N---TEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLM 113 (341)
Q Consensus 39 ~~~~~~~~TPl~~~~l~~L~~--g---~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll 113 (341)
..++..+.||+++ .+++.. + .++|+| .|+.||+ ++||||.+..++
T Consensus 69 ~~~l~eg~tp~~~--~~~~~~~l~~~~~~lyvk-------~~~~nPT---------------------~SFKDrg~~~~~ 118 (411)
T COG0498 69 AVSLGEGGTPLYK--APALAAPLGVLNDNLYVK-------ELGHNPT---------------------GSFKDRGMTVLV 118 (411)
T ss_pred hhhhhhccCcccc--CcccchhhccCCcceehh-------hhccCCC---------------------cchhhhhHHHHH
Confidence 5578899999998 666655 4 359999 8888885 556999999999
Q ss_pred HHHHHcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCC-CCCcCCCCCcchhHHHHHhCCCEEEEECCccccccC
Q 019410 114 ADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTS-KVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIG 192 (341)
Q Consensus 114 ~~A~~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~-~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~ 192 (341)
..+.+.|..+|++ +|+||+|.++|+++++.|++|+|++|.. .+ .+++.+|..+||+++.+++ .||++
T Consensus 119 ~~~~~~g~~~I~~--ASSGnTgAs~aaya~rag~~v~Vl~P~g~vs--------~~k~~q~~~~ga~~i~v~G-~fDda- 186 (411)
T COG0498 119 SLAKELGAKTILC--ASSGNTGASAAAYAARAGLKVFVLYPKGKVS--------PGKLAQMLTLGAHVIAVDG-NFDDA- 186 (411)
T ss_pred HHHHHhcCCEEEE--eCCchHHHHHHHHhccCCCeEEEEecCCCCC--------HHHHHHHHhcCCEEEEEcC-cHHHH-
Confidence 9998887666665 5789999999999999999999999987 43 4679999999999999986 47542
Q ss_pred cHHHHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcCCC
Q 019410 193 SVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTL 272 (341)
Q Consensus 193 ~~~~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~~~ 272 (341)
.++++++.++. .++...+..||...+|+.+.+.|+.+|+.. ..||+|++|+|+||.+.|++.++++..+
T Consensus 187 -----~~~vk~~~~~~--~~~~~~nsiNp~rlegq~t~~fe~~~ql~~----~~p~~v~vPvGn~gni~a~~~g~~~~~~ 255 (411)
T COG0498 187 -----QELVKEAANRE--GLLSAVNSINPYRLEGQKTYAFEIAEQLGW----KAPDHVVVPVGNGGNLLAIYKGFKEGLP 255 (411)
T ss_pred -----HHHHHHHHhhC--CceeeccccCHHHhhhhhhhHhHHHHHhCC----CCCCeEEEeCCchHHHHHHHHHHHhccc
Confidence 33444555432 333445567899999999999999999972 5799999999999999999999998643
Q ss_pred ------CCeEEEEeeCCCCccchH------hHHHHhhcccCCCC-------------CCceEEeccchHHHHHHHHHHH
Q 019410 273 ------KAKVHAFSVCDDPDYFYD------YTQGLLDGLNAGVD-------------SRDIVNIQNVSVYMTFKNILMN 326 (341)
Q Consensus 273 ------~~rVigVe~~g~~~~~~~------~i~~l~~~~~~~~~-------------~~~iv~v~d~~~~~~~~~~~~~ 326 (341)
-++..+|++++-....+. ..+.+.+.+..... -...+.|+|++...+++.++..
T Consensus 256 ~g~i~~~p~~~~vqaeg~~p~~~~~~~~~~~~~T~a~am~I~~p~n~~r~l~a~~es~g~~~~vsdeEi~~a~~~l~~~ 334 (411)
T COG0498 256 IGKIDKAPNMNGVQAEGFSPGVYAWKEGRETPETIAPAMDIGNPSNWERALFALRESGGLAVAVSDEEILEAIKLLAER 334 (411)
T ss_pred ccchhcCchhhhhhHhhccchhhhcccccccccccccccccCCCCCHHHHHHHHHhcCCceEEeCHHHHHHHHHHHHHh
Confidence 235566666653322111 22233333332211 1248999999999999988764
No 81
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=99.85 E-value=2.5e-20 Score=175.46 Aligned_cols=220 Identities=19% Similarity=0.213 Sum_probs=156.0
Q ss_pred CCCCchhhcCCCCCcccccCcCCCcccccCCCCCCC--CceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCC
Q 019410 24 APPSWASHLAPIPSHVFSLGHFPTPIHKWNLPNLPH--NTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQL 101 (341)
Q Consensus 24 ~~p~~~~~~~~~~~~~~~~~~~~TPl~~~~l~~L~~--g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ 101 (341)
..|.|.+.|..+-+ ...-.||||.. ..+|++ |++||+| ||||++ +
T Consensus 37 ~D~~F~~el~~~l~---~Y~GRptpLy~--a~~Lt~~~gakiyLK--------------------------REDL~H--t 83 (396)
T COG0133 37 NDPEFQAELDYLLK---DYAGRPTPLYF--AERLTEHLGAKIYLK--------------------------REDLNH--T 83 (396)
T ss_pred cCHHHHHHHHHHHH---HhCCCCChhHH--HHHHHHhhCceEEEe--------------------------hhhhcc--c
Confidence 34556655544322 23457999998 788888 8999999 999987 7
Q ss_pred CchHhHHHHHHHHHHHHcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEE
Q 019410 102 SGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIE 181 (341)
Q Consensus 102 ggnK~Rkl~~ll~~A~~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~ 181 (341)
|++|.-....-+-.|++.|.+.||..-| .|-||.|.|.+|+++|++|+|||-...-.. +.-|+-.|+.+||+|+
T Consensus 84 GAHKiNN~lGQ~LLAkrMGK~riIAETG-AGQHGVAtAta~A~fgl~C~iYMGa~Dv~R-----Q~~NVfRM~LlGA~V~ 157 (396)
T COG0133 84 GAHKINNALGQALLAKRMGKTRIIAETG-AGQHGVATATAAALFGLECVIYMGAEDVER-----QALNVFRMRLLGAEVV 157 (396)
T ss_pred chhhHHHHHHHHHHHHHhCCceEEeecC-CCcccHHHHHHHHHhCCceEEEecchhhhh-----cccchhhhhhcCceEE
Confidence 8899998877777788899999995422 278999999999999999999998543211 2458999999999999
Q ss_pred EECCccccccCcHHHHHHHHHHHHHhCCCc-EEeC-CCCCchh--HHHHHH-HHHHHHHHHHhcCCCCCCCCEEEEcCCc
Q 019410 182 LISKEEYSKIGSVTLTNILKEKLLKEGRRP-YVIP-VGGSNSI--GTWGYI-EAIKEIEQQLQTGTGGVKFDDIVVACGS 256 (341)
Q Consensus 182 ~v~~~~~~~~~~~~~~~~~a~~l~~~g~~~-~~ip-~g~~n~~--~~~G~~-t~a~EI~~Ql~~~~~g~~~D~Ivv~vGt 256 (341)
.|..+.--. .+.+.+..+.+..+-... |++- .-+.+|. .+.-+. -++.|.-+|+.+. .|.-||+||.|+|+
T Consensus 158 pV~sGs~TL---KDA~neAlRdWvtn~~~ThY~iGsa~GPHPyP~iVRdFQ~vIG~E~k~Qile~-egrlPD~vvACVGG 233 (396)
T COG0133 158 PVTSGSGTL---KDAINEALRDWVTNVEDTHYLIGSAAGPHPYPTIVRDFQSVIGEEAKAQILEK-EGRLPDAVVACVGG 233 (396)
T ss_pred EeccCCchH---HHHHHHHHHHHHhccccceEEEeeccCCCCchHHHHHHHHHHhHHHHHHHHHH-hCCCCCeEEEeccC
Confidence 998642111 112222222223222233 4442 1234443 344444 4689999997542 35679999999999
Q ss_pred hhHHHHHHHHHhcCCCCCeEEEEeeCCCCcc
Q 019410 257 GGTIAGLSLGSWLGTLKAKVHAFSVCDDPDY 287 (341)
Q Consensus 257 GGt~aGl~~~~k~~~~~~rVigVe~~g~~~~ 287 (341)
|+.++|+...|.. .+++++||||+.|....
T Consensus 234 GSNAiG~F~~Fi~-d~~V~LiGvEaaG~Gi~ 263 (396)
T COG0133 234 GSNAIGIFHPFID-DESVRLIGVEAAGKGIE 263 (396)
T ss_pred CcchhhhcccccC-CCCceEEEeccCcCccC
Confidence 9999999988864 37899999999886543
No 82
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=99.73 E-value=1.3e-17 Score=158.59 Aligned_cols=201 Identities=19% Similarity=0.167 Sum_probs=139.8
Q ss_pred CcCCCcccccCCCCCCC----CceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHHHHHH
Q 019410 43 GHFPTPIHKWNLPNLPH----NTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMADAVA 118 (341)
Q Consensus 43 ~~~~TPl~~~~l~~L~~----g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~~A~~ 118 (341)
.-.||||++ .++|.+ |.+||+| |||+++ .|++|...+..-+-.|.+
T Consensus 119 ~gRpspL~~--AkRLte~~q~ga~IylK--------------------------rEdlnh--~GsHKiNnav~Qallakr 168 (477)
T KOG1395|consen 119 LGRPSPLIR--AKRLTEHCQTGARIYLK--------------------------REDLNH--TGSHKINNAVAQALLAKR 168 (477)
T ss_pred cCCCchhHH--HHHHHHHhCCCCEEEEE--------------------------ecCCCc--cccCCcccHHHHHHHHHH
Confidence 446899998 777765 7899999 999986 799999987666666778
Q ss_pred cCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCcc--ccccCcHHH
Q 019410 119 QGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEE--YSKIGSVTL 196 (341)
Q Consensus 119 ~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~--~~~~~~~~~ 196 (341)
.|.+.||+.-| .|-||.|+|.+|+++|++|+|+|-...-.. ..-|+..||.+||+|+.+..+. .+++ ..+.
T Consensus 169 lGkknviaETG-AGQhGvatA~a~a~FGl~C~v~mgAed~~r-----qalnvfrmrllGAkV~pv~sGt~tLrda-~sea 241 (477)
T KOG1395|consen 169 LGKKNVIAETG-AGQHGVATATACAKFGLDCTVYMGAEDYRR-----QALNVFRMRLLGAKVHPVTSGTRTLRDA-TSEA 241 (477)
T ss_pred hcccceeeccC-CCccchHHHHHHHHhCCceEEEechhHHHH-----HHHHHHHHHHhCceEeecCCCceehhcc-cchh
Confidence 89999996533 378999999999999999999997543211 2357899999999999997642 1111 1111
Q ss_pred HHHHHHHHHHhCCCcEEeC--CCCCchhHH---HHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcCC
Q 019410 197 TNILKEKLLKEGRRPYVIP--VGGSNSIGT---WGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGT 271 (341)
Q Consensus 197 ~~~~a~~l~~~g~~~~~ip--~g~~n~~~~---~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~~ 271 (341)
.+.+...++ ..+++- .-+.+|... .=+..++.|-..|.-+. .+..||.||.|+|+|+..+|+..-|.. .
T Consensus 242 ~r~wvt~~e----tt~y~~gs~~gphp~pt~vr~fhsvIg~Et~~Q~me~-~g~~PD~vvaCvGGGSN~~Glf~pF~~-d 315 (477)
T KOG1395|consen 242 GRLWVTNSE----TTHYAAGSAIGPHPYPTVVRTFHSVIGKETKIQQMEK-FGKLPDAVVACVGGGSNSAGLFSPFIR-D 315 (477)
T ss_pred hhhhhhhhh----eeeeeecccCCCCCcHHHHHHHHHHHhHHHHHHHHHH-hCCCCCeEEEeccCCCccccccchhhc-c
Confidence 222222222 122221 112333321 12345777766665332 457899999999999999999988874 3
Q ss_pred CCCeEEEEeeCCCCc
Q 019410 272 LKAKVHAFSVCDDPD 286 (341)
Q Consensus 272 ~~~rVigVe~~g~~~ 286 (341)
..++.+||+..+++.
T Consensus 316 k~v~~igveaagdg~ 330 (477)
T KOG1395|consen 316 KSVGMIGVEAAGDGV 330 (477)
T ss_pred chhheeeeeeccccc
Confidence 567889999887654
No 83
>PRK09225 threonine synthase; Validated
Probab=99.62 E-value=2e-14 Score=145.07 Aligned_cols=162 Identities=12% Similarity=0.003 Sum_probs=115.2
Q ss_pred CCCCchHhHHHHH---HHHHHHHcCCCeEEEeCCCcchHHHHH-HHHHHHcCCeEEEEEcCC-CCCcCCCCCcchhHHHH
Q 019410 99 MQLSGNKVRKLEF---LMADAVAQGADCIITIGGIQSNHCRAA-AVAAKYLNLDCYLILRTS-KVLVDQDPGLIGNLLVE 173 (341)
Q Consensus 99 ~~~ggnK~Rkl~~---ll~~A~~~g~~~vVt~G~s~GNhg~Al-A~aa~~~Gl~~~ivvp~~-~~~~~~~~~~~gn~~~~ 173 (341)
.++++||||++.. ++..+.+.+..+|++ +|+||+|.|+ |..+.+.|++|+|++|.. ++ ..+.++|
T Consensus 106 GPT~sFKD~a~~~l~~~l~~a~~~~~~~Il~--ATSGdtG~Aa~aaf~~~~gi~~~V~~P~g~vs--------~~q~~Qm 175 (462)
T PRK09225 106 GPTLAFKDFALQFLAQLLEYVLKGEKITILG--ATSGDTGSAAAEAFRGKPNVRVVILYPKGKVS--------PVQEKQM 175 (462)
T ss_pred CCccchhhhHHHHHHHHHHHHHhCCCcEEEE--cCCCcHHHHHHHHHhCcCCCEEEEEEcCCCCC--------HHHHHHH
Confidence 3367779999887 788887733556665 6789999998 789999999999999975 54 2357788
Q ss_pred HhC-CCEE--EEECCccccccCcHHHHHHHHHHHHHh---CCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCC
Q 019410 174 RLV-GAHI--ELISKEEYSKIGSVTLTNILKEKLLKE---GRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKF 247 (341)
Q Consensus 174 ~~~-GAeV--~~v~~~~~~~~~~~~~~~~~a~~l~~~---g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~ 247 (341)
..+ |++| +.|++ .|++. +.+++++... ....-+...+..|+..++|+.+.+.|+++|+.. ....+
T Consensus 176 ~t~~g~nv~vi~V~G-~fDD~------q~~vk~~~~d~~~~~~~~l~saNSiN~~Ri~gQ~~yyfea~~ql~~--~~~~p 246 (462)
T PRK09225 176 TTLQGDNIHVVAVEG-NFDDC------QALVKAAFNDEELKEKLKLSSANSINIGRLLAQIVYYFYAYLQLGI--EAGEK 246 (462)
T ss_pred HhhcCCCeEEEEeCC-CHHHH------HHHHHHHhhchhhhhcCceEEEeccCHHHHHHHHHHHHHHHHHhcc--ccCCC
Confidence 888 9977 66665 46543 2223332211 001112223335888899999999999999963 11358
Q ss_pred CEEEEcCCchhHHHHHHHHHhcCCCCC-eEEEEe
Q 019410 248 DDIVVACGSGGTIAGLSLGSWLGTLKA-KVHAFS 280 (341)
Q Consensus 248 D~Ivv~vGtGGt~aGl~~~~k~~~~~~-rVigVe 280 (341)
|.||||+|+||.+.|.+.+ +.+|..+ |+|+++
T Consensus 247 ~~~vVPtGnfgni~a~~~A-k~mGlpi~kli~A~ 279 (462)
T PRK09225 247 VNFSVPSGNFGNILAGYYA-KKMGLPIKRLIVAT 279 (462)
T ss_pred CEEEEECCcHHHHHHHHHH-HHcCCCcceEEEEe
Confidence 9999999999999999998 5556544 888865
No 84
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.
Probab=99.58 E-value=7.5e-14 Score=140.90 Aligned_cols=161 Identities=14% Similarity=0.042 Sum_probs=114.5
Q ss_pred CCchHhHHHHHH---HHHHHHc--CCCeEEEeCCCcchHHHH-HHHHHHHcCCeEEEEEcCC-CCCcCCCCCcchhHHHH
Q 019410 101 LSGNKVRKLEFL---MADAVAQ--GADCIITIGGIQSNHCRA-AAVAAKYLNLDCYLILRTS-KVLVDQDPGLIGNLLVE 173 (341)
Q Consensus 101 ~ggnK~Rkl~~l---l~~A~~~--g~~~vVt~G~s~GNhg~A-lA~aa~~~Gl~~~ivvp~~-~~~~~~~~~~~gn~~~~ 173 (341)
+++||||.+..+ +..+.++ +..+|++ +|+||+|.| +|..+.+.|++|+|++|.. ++ ..+.++|
T Consensus 107 T~sFKD~a~~~l~~l~~~~~~~~~~~~~Il~--ATSGdTG~Aa~aaf~~~~gi~v~Vl~P~g~vs--------~~Q~~Qm 176 (460)
T cd01560 107 TLAFKDMALQFLGRLLEYFLKRRNERITILV--ATSGDTGSAAIEGFRGKPNVDVVVLYPKGGVS--------PIQELQM 176 (460)
T ss_pred CcchHHhHHHHHHHHHHHHHHhcCCCeEEEE--cCCCcHHHHHHHHHhCcCCCEEEEEEcCCCCC--------HHHHHHH
Confidence 566799998765 7777655 5566665 688999999 5899999999999999975 54 2457888
Q ss_pred HhCCC---EEEEECCccccccCcHHHHHHHHHHHHHh---CCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCC
Q 019410 174 RLVGA---HIELISKEEYSKIGSVTLTNILKEKLLKE---GRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKF 247 (341)
Q Consensus 174 ~~~GA---eV~~v~~~~~~~~~~~~~~~~~a~~l~~~---g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~ 247 (341)
..+|+ +++.|++ .|++. +.+++++.+. ..+.-+...+..|+..+.|+.+.+.|+.+|+.... ...+
T Consensus 177 ~t~g~~Nv~vi~V~G-~fDd~------q~~vk~~~~d~~~~~~~~l~saNSiN~~Ri~~Q~~yyf~a~~ql~~~~-~~~p 248 (460)
T cd01560 177 TTLPADNVHVVAVEG-DFDDC------QSLVKALFADEDFNKKLKLSSANSINWARILAQIVYYFYAYLQLLKRG-EGEK 248 (460)
T ss_pred HhhCCCceEEEEEcC-CHHHH------HHHHHHHhcChhhHhcceEEEEeccCHHHHHHHHHHHHHHHHHhcccc-CCCC
Confidence 99996 7888886 47543 2223332211 00111222334578889999999999999996310 1268
Q ss_pred CEEEEcCCchhHHHHHHHHHhcCCCC-CeEEEEe
Q 019410 248 DDIVVACGSGGTIAGLSLGSWLGTLK-AKVHAFS 280 (341)
Q Consensus 248 D~Ivv~vGtGGt~aGl~~~~k~~~~~-~rVigVe 280 (341)
+.|+||+|+||.+.|.+.+.+ +|.+ .|+|++.
T Consensus 249 ~~~vVPtGnfgni~a~~~Ak~-mGlpi~kli~a~ 281 (460)
T cd01560 249 VEFSVPTGNFGNILAGYYAKK-MGLPIKKLIVAT 281 (460)
T ss_pred CEEEEECCcHHHHHHHHHHHH-cCCCCccEEEEe
Confidence 999999999999999999866 4544 4787743
No 85
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=99.55 E-value=6.8e-14 Score=132.53 Aligned_cols=199 Identities=20% Similarity=0.173 Sum_probs=131.7
Q ss_pred cCCCcccccCCCCCCC----CceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCCchHhHHHHHHHHHHHHc
Q 019410 44 HFPTPIHKWNLPNLPH----NTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLSGNKVRKLEFLMADAVAQ 119 (341)
Q Consensus 44 ~~~TPl~~~~l~~L~~----g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~ggnK~Rkl~~ll~~A~~~ 119 (341)
..||||++ ..+|.+ .++||.| -|...| +||+|...+..-.--+...
T Consensus 76 gRPTPL~R--A~~LE~~L~tparIYyK-------~Eg~tp---------------------tGSHKiNTAlAqaYyak~e 125 (432)
T COG1350 76 GRPTPLIR--AKNLEEALGTPARIYYK-------YEGVTP---------------------TGSHKINTALAQAYYAKKE 125 (432)
T ss_pred CCCCchhh--hhhHHHHhCCCcEEEEE-------ecccCC---------------------CCCCCcchHHHHHHHHHhc
Confidence 37999999 777755 5699999 444444 5666777664444456788
Q ss_pred CCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCccccccCc------
Q 019410 120 GADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGS------ 193 (341)
Q Consensus 120 g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~~------ 193 (341)
|.+.|+|.-| .|-+|.|++++|+.+|++|+|||-...=.++ .-..-+|++|||+|+..+.+ .-+.++
T Consensus 126 g~~rl~TETG-AGQWGsAlslA~alf~lk~~V~Mvr~Sy~qK-----pyRk~lM~~yGa~V~pSPS~-~Te~Grk~l~e~ 198 (432)
T COG1350 126 GAKRLTTETG-AGQWGSALSLAAALFGLKATVFMVRVSYYQK-----PYRKYLMELYGAEVVPSPSE-LTEFGRKILKED 198 (432)
T ss_pred CceeeecccC-CchHHHHHHHHHHHhCceeEEEEEehhhhcc-----hHHHHHHHHhCCeecCCCcc-hhHHHHHHHhcC
Confidence 9999997533 3789999999999999999999975442222 12467899999999987752 111110
Q ss_pred ------HH-HHHHHHHHHHHhCCCcEEeCCCCCchhH--HHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHH
Q 019410 194 ------VT-LTNILKEKLLKEGRRPYVIPVGGSNSIG--TWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLS 264 (341)
Q Consensus 194 ------~~-~~~~~a~~l~~~g~~~~~ip~g~~n~~~--~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~ 264 (341)
-. .+.+..+...+++ +..+.+ | + ..+ ..+.--+|+|..+|+.. .+..||+||-|||+|+.++|+.
T Consensus 199 p~hPGSLGIAISEAiE~al~~~-~~kY~l-G-S-VlnhvllhQTViGlEakkQle~--~~e~PDv~igcvGGGSNfag~~ 272 (432)
T COG1350 199 PDHPGSLGIAISEAIEYALKNE-NTKYSL-G-S-VLNHVLLHQTVIGLEAKKQLEQ--AGEDPDVIIGCVGGGSNFAGLT 272 (432)
T ss_pred CCCCchhHHHHHHHHHHHHhCC-Cceecc-h-h-HHHHHHHHHHHHhHHHHHHHHh--cCCCCCEEEEeccCCCcccccc
Confidence 00 1111111212222 333333 2 2 222 34555579999888874 4578999999999999999998
Q ss_pred HHHh---cCCC-CCeEEEEeeCCCC
Q 019410 265 LGSW---LGTL-KAKVHAFSVCDDP 285 (341)
Q Consensus 265 ~~~k---~~~~-~~rVigVe~~g~~ 285 (341)
.-|- +.+. .+++|+|++..-+
T Consensus 273 yPfi~d~l~g~~~~~fiAvep~a~P 297 (432)
T COG1350 273 YPFIGDKLRGKKETRFIAVEPKACP 297 (432)
T ss_pred chhhhhhhcCCceeEEEEeCCccCC
Confidence 6553 3333 3899999977543
No 86
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]
Probab=98.94 E-value=1.9e-08 Score=95.13 Aligned_cols=254 Identities=16% Similarity=0.178 Sum_probs=166.0
Q ss_pred CCCCCcccccCcCCCcccccCCCCC----CC------CceEEEeeCCCCCCccccCccchhhHhhhhhcccccccCCCCC
Q 019410 33 APIPSHVFSLGHFPTPIHKWNLPNL----PH------NTEVWLKSNFSGVSDDFWNLWGFERICYVLLLQRDDLSGMQLS 102 (341)
Q Consensus 33 ~~~~~~~~~~~~~~TPl~~~~l~~L----~~------g~~v~~K~~~~~~~~e~~np~gs~~~~~~~~~~REDl~~~~~g 102 (341)
+.+|...-.-++-.+||+. .+.+ .+ .-++|+| +|.-.+ ..|
T Consensus 65 k~FPeT~~~~GiIES~lv~--i~~mq~~Le~~Y~~~i~G~llLK--------------------------~DshLp-IsG 115 (443)
T COG3048 65 KAFPETAATGGIIESPLVE--IPAMQKRLEKEYQQPIPGRLLLK--------------------------KDSHLP-ISG 115 (443)
T ss_pred HhCccccccCCeeccchhh--hHHHHHHHHHHhcCCCCcceeee--------------------------ccCCCC-ccc
Confidence 4456555566777889987 3332 11 2489999 776432 358
Q ss_pred chHhHH-HHHHHHHHH----HcCC--------------------CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCC
Q 019410 103 GNKVRK-LEFLMADAV----AQGA--------------------DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSK 157 (341)
Q Consensus 103 gnK~Rk-l~~ll~~A~----~~g~--------------------~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~ 157 (341)
|.|.|+ .+..+..|+ +.|. +.=|..| |.||.|.++-...+.+|++++|.|..++
T Consensus 116 SIKARGGIYEVL~hAE~LAle~Gll~~~DDYs~L~~~~f~~FFs~ysIaVG-STGNLGlSIGI~sA~lGF~vtVHMSADA 194 (443)
T COG3048 116 SIKARGGIYEVLKHAEKLALEAGLLTLEDDYSILLSEEFKDFFSRYSIAVG-STGNLGLSIGIMSAALGFKVTVHMSADA 194 (443)
T ss_pred ceeccccHHHHHHHHHHHHHhcCcccccchHHHhhcHHHHHHHHhheEeec-ccCccceehhhhhhhhcceEEEEecchH
Confidence 899997 455565554 3442 1123444 6799999999999999999999998765
Q ss_pred CCcCCCCCcchhHHHHHhCCCEEEEECCccccccCcHHHHHHHHHHHHHhCCCcEEeCCCCCchh-HHHHHHHHHHHHHH
Q 019410 158 VLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSI-GTWGYIEAIKEIEQ 236 (341)
Q Consensus 158 ~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~a~~l~~~g~~~~~ip~g~~n~~-~~~G~~t~a~EI~~ 236 (341)
- .=|...+|+.|.+|+.... +|..+ +++-.++ +++.+.+|||.. .|.. -..||.-.+.-|-.
T Consensus 195 r--------~WKKd~LRs~gV~ViEYe~-DY~~A-----VeeGRk~-a~~DP~c~FiDD--E~S~~LFLGYaVAa~Rlk~ 257 (443)
T COG3048 195 R--------AWKKDKLRSHGVTVVEYEQ-DYGVA-----VEEGRKE-AESDPNCFFIDD--ENSRTLFLGYAVAAQRLKK 257 (443)
T ss_pred H--------HHHHHHHHhcCceEEEecc-hhhHH-----HHHhhhh-hccCCceEEecc--cchhhhhhhHHHHHHHHHH
Confidence 2 2357889999999998875 36432 2222222 333566788853 3333 35799988999999
Q ss_pred HHhcCCC---CCCCCEEEEcCCchhHHHHHHHHHhc-CCCCCeEEEEeeCCCCccc-------hHhHH---------HHh
Q 019410 237 QLQTGTG---GVKFDDIVVACGSGGTIAGLSLGSWL-GTLKAKVHAFSVCDDPDYF-------YDYTQ---------GLL 296 (341)
Q Consensus 237 Ql~~~~~---g~~~D~Ivv~vGtGGt~aGl~~~~k~-~~~~~rVigVe~~g~~~~~-------~~~i~---------~l~ 296 (341)
|+.+++. ...|=.|.+|||-||.-.|++-++|. .+.++.++-+|+..++-.+ +++|. .-+
T Consensus 258 Q~d~~gi~vd~ehPLfVylPCGVGGgPGGVafGLKl~fgd~VhcfFaEPthsPcMlLGv~tGlHe~ISVqdiGidn~TaA 337 (443)
T COG3048 258 QFDEQGIVVDAEHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCMLLGVYTGLHEQISVQDIGIDNLTAA 337 (443)
T ss_pred HHHhcCceecCCCceEEEeecCCCCCcchhhhhhHhhhcCceEEEEecCCCChHHHHhhhhccccceeeEeecccccccc
Confidence 9975211 12455689999999999999999996 4677888888877765432 22220 113
Q ss_pred hcccCCC-----------CCCceEEeccchHHHHHHHHHHHHHhcCCCCCC
Q 019410 297 DGLNAGV-----------DSRDIVNIQNVSVYMTFKNILMNILMNGKQPTP 336 (341)
Q Consensus 297 ~~~~~~~-----------~~~~iv~v~d~~~~~~~~~~~~~~~~~~~~~~~ 336 (341)
+|++.+. ..+-+.+|+|...+..+..++- -.|+.-.|
T Consensus 338 DGLAVgRpSgfVgr~me~lL~G~~TvdD~~ly~lL~~L~~---~e~~rlEP 385 (443)
T COG3048 338 DGLAVGRPSGFVGRAMERLLDGYYTVDDQTLYDLLGWLAQ---EEGIRLEP 385 (443)
T ss_pred cceeecCccchHHHHHHHHhCCcEEechHHHHHHHHHHHH---hcCcccCc
Confidence 3333321 2467899999988877666553 34444433
No 87
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=91.18 E-value=15 Score=35.60 Aligned_cols=160 Identities=16% Similarity=0.141 Sum_probs=84.1
Q ss_pred HHHHHHHHHcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCC------CCCcchhH---HHHHhCC---
Q 019410 110 EFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQ------DPGLIGNL---LVERLVG--- 177 (341)
Q Consensus 110 ~~ll~~A~~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~------~~~~~gn~---~~~~~~G--- 177 (341)
..+++.+++++.+.|+.. +...+........++..|++++.+-....+.... +....|.. .+.+.+|
T Consensus 70 ~~~i~~li~~~vdgIiv~-~~d~~al~~~l~~a~~~gIpVV~~d~~~~~~~~~~~V~~~~~~~~G~~~~~~l~~~l~~g~ 148 (336)
T PRK15408 70 VQLINNFVNQGYNAIIVS-AVSPDGLCPALKRAMQRGVKVLTWDSDTKPECRSYYINQGTPEQLGSMLVEMAAKQVGKDK 148 (336)
T ss_pred HHHHHHHHHcCCCEEEEe-cCCHHHHHHHHHHHHHCCCeEEEeCCCCCCccceEEEecCCHHHHHHHHHHHHHHhcCCCC
Confidence 356788888999998865 3445555566667888999998885432110000 00011222 2233344
Q ss_pred CEEEEECCccccccCcHHHHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCch
Q 019410 178 AHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSG 257 (341)
Q Consensus 178 AeV~~v~~~~~~~~~~~~~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtG 257 (341)
.+|.++....-.. ....+.+...+.+.+..+..-++..+..+...-.++ ..+.++++.- .++|.||++ +.
T Consensus 149 gki~il~g~~~~~-~~~~r~~g~~~~l~~~~p~~~vv~~~~~~~d~~~a~-~~~~~lL~~~------pdi~aI~~~--~~ 218 (336)
T PRK15408 149 AKVAFFYSSPTVT-DQNQWVKEAKAKIAKEHPGWEIVTTQFGYNDATKSL-QTAEGILKAY------PDLDAIIAP--DA 218 (336)
T ss_pred CEEEEEECCCCCc-cHHHHHHHHHHHHHhhCCCCEEEeecCCCCcHHHHH-HHHHHHHHHC------CCCcEEEEC--CC
Confidence 4665554311100 111222333334433344444555433333333344 2445555543 368999986 33
Q ss_pred hHHHHHHHHHhcCCC-CCeEEEEe
Q 019410 258 GTIAGLSLGSWLGTL-KAKVHAFS 280 (341)
Q Consensus 258 Gt~aGl~~~~k~~~~-~~rVigVe 280 (341)
..+.|++.+++..+. ++.|+|++
T Consensus 219 ~~~~Ga~~Al~~~g~~~v~VvG~D 242 (336)
T PRK15408 219 NALPAAAQAAENLKRDKVAIVGFS 242 (336)
T ss_pred ccHHHHHHHHHhCCCCCEEEEEeC
Confidence 445578888887654 67777765
No 88
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.02 E-value=49 Score=33.44 Aligned_cols=161 Identities=16% Similarity=0.181 Sum_probs=90.9
Q ss_pred ccccccC--CCCCchHhHHHHHHHHHHHH----cC---------CCeEEEeCCCc----chHHHHHHHHHHHcCCeEEEE
Q 019410 92 QRDDLSG--MQLSGNKVRKLEFLMADAVA----QG---------ADCIITIGGIQ----SNHCRAAAVAAKYLNLDCYLI 152 (341)
Q Consensus 92 ~REDl~~--~~~ggnK~Rkl~~ll~~A~~----~g---------~~~vVt~G~s~----GNhg~AlA~aa~~~Gl~~~iv 152 (341)
+|++++. ...|-||.|-...++-+-+. .+ ...||.+-|-| --+|.-+|++-++.|+++-++
T Consensus 56 ir~~i~~~~~~~G~nk~r~i~~~vf~eL~kl~dp~~~~~~~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~Lv 135 (483)
T KOG0780|consen 56 IRKIINLEKLASGVNKRRIIQKAVFDELVKLLDPGKSALQPKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALV 135 (483)
T ss_pred HHHHhchhhhccccCHHHHHHHHHHHHHHHHhCCCCcccccccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEE
Confidence 4555543 34566899887766544321 12 23455322222 257889999999999999999
Q ss_pred EcCCCCCcCCCCCcchhHHHHHhCC--CEEEEECCccccccCcHHHHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHH
Q 019410 153 LRTSKVLVDQDPGLIGNLLVERLVG--AHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEA 230 (341)
Q Consensus 153 vp~~~~~~~~~~~~~gn~~~~~~~G--AeV~~v~~~~~~~~~~~~~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~ 230 (341)
.-++.- .+-...++.++ +.|-++. .|.+.+-...+.+-.+++.+++-...++...|.+.. -..+
T Consensus 136 caDTFR--------agAfDQLkqnA~k~~iP~yg--syte~dpv~ia~egv~~fKke~fdvIIvDTSGRh~q----e~sL 201 (483)
T KOG0780|consen 136 CADTFR--------AGAFDQLKQNATKARVPFYG--SYTEADPVKIASEGVDRFKKENFDVIIVDTSGRHKQ----EASL 201 (483)
T ss_pred eecccc--------cchHHHHHHHhHhhCCeeEe--cccccchHHHHHHHHHHHHhcCCcEEEEeCCCchhh----hHHH
Confidence 876541 23344455443 3444443 344443333444445566665533344433332221 1246
Q ss_pred HHHHHHHHhcCCCCCCCCE--EEEcCCchhHHHHHHHHHhcC
Q 019410 231 IKEIEQQLQTGTGGVKFDD--IVVACGSGGTIAGLSLGSWLG 270 (341)
Q Consensus 231 a~EI~~Ql~~~~~g~~~D~--Ivv~vGtGGt~aGl~~~~k~~ 270 (341)
..|+.+--.. ..||- +|+.++.|-.+.--+.+|++.
T Consensus 202 feEM~~v~~a----i~Pd~vi~VmDasiGQaae~Qa~aFk~~ 239 (483)
T KOG0780|consen 202 FEEMKQVSKA----IKPDEIIFVMDASIGQAAEAQARAFKET 239 (483)
T ss_pred HHHHHHHHhh----cCCCeEEEEEeccccHhHHHHHHHHHHh
Confidence 6676443332 34654 567888999999999999863
No 89
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=80.04 E-value=23 Score=33.73 Aligned_cols=74 Identities=20% Similarity=0.198 Sum_probs=44.0
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCccccccCcHHHHHHHH
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILK 201 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~a 201 (341)
..||| | ++|.-|.++|..-++.|.+.+++-+...... .-..++-..+|-+|.+.+-+ +.+ .+.++++.
T Consensus 8 ~~lIT-G-ASsGIG~~~A~~lA~~g~~liLvaR~~~kL~------~la~~l~~~~~v~v~vi~~D-Ls~---~~~~~~l~ 75 (265)
T COG0300 8 TALIT-G-ASSGIGAELAKQLARRGYNLILVARREDKLE------ALAKELEDKTGVEVEVIPAD-LSD---PEALERLE 75 (265)
T ss_pred EEEEE-C-CCchHHHHHHHHHHHCCCEEEEEeCcHHHHH------HHHHHHHHhhCceEEEEECc-CCC---hhHHHHHH
Confidence 44565 4 5578999999999999999999988654211 01122333456666666543 221 22335555
Q ss_pred HHHHHh
Q 019410 202 EKLLKE 207 (341)
Q Consensus 202 ~~l~~~ 207 (341)
+++..+
T Consensus 76 ~~l~~~ 81 (265)
T COG0300 76 DELKER 81 (265)
T ss_pred HHHHhc
Confidence 555554
No 90
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=75.74 E-value=24 Score=32.87 Aligned_cols=93 Identities=20% Similarity=0.180 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcCCCCCeEEEEeeCCC---CccchHhHHHHhhcc
Q 019410 223 GTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDD---PDYFYDYTQGLLDGL 299 (341)
Q Consensus 223 ~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~~~~~rVigVe~~g~---~~~~~~~i~~l~~~~ 299 (341)
++.|-..+..++.+... ..+|.+++.+|-=|++-++..++- ++.||||.+.-. ...+.....++++.+
T Consensus 154 GVAGiHRLl~~l~r~~~-----~~~~~lIVvAGMEGaLPsvvagLv----D~PVIavPTsVGYG~g~gGiaaLltMLqSC 224 (254)
T COG1691 154 GVAGIHRLLSALKRLKI-----EDADVLIVVAGMEGALPSVVAGLV----DVPVIAVPTSVGYGAGGGGIAALLTMLQSC 224 (254)
T ss_pred ccchHHhhhhHHHHHHh-----hCCCeEEEEcccccchHHHHHhcc----CCCeEecccccccCcCCccHHHHHHHHHhc
Confidence 34455555555544333 368999999999999999998874 689999986522 223355666778888
Q ss_pred cCCCCCCceEEeccchH-HHHHHHHHHHH
Q 019410 300 NAGVDSRDIVNIQNVSV-YMTFKNILMNI 327 (341)
Q Consensus 300 ~~~~~~~~iv~v~d~~~-~~~~~~~~~~~ 327 (341)
.+++- +|.|++|-+ ....-.|+.-+
T Consensus 225 spGv~---VVNIdNGfGAa~~A~~I~r~~ 250 (254)
T COG1691 225 SPGVG---VVNIDNGFGAAVLAVQILRRI 250 (254)
T ss_pred CCCeE---EEEccCchHHHHHHHHHHHHH
Confidence 87775 799999944 44444444443
No 91
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=74.81 E-value=9.3 Score=36.98 Aligned_cols=69 Identities=19% Similarity=0.143 Sum_probs=48.6
Q ss_pred HHHHHHHHHHcC-CCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECC
Q 019410 109 LEFLMADAVAQG-ADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISK 185 (341)
Q Consensus 109 l~~ll~~A~~~g-~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~ 185 (341)
++-|+.+-.... .+.||--| +.|--|+++-..|+.+|++.+=+++++... ..-...++.+||+-++.+.
T Consensus 148 AyrmL~dfv~L~~GD~vIQNg-anS~VG~~ViQlaka~GiktinvVRdR~~i-------eel~~~Lk~lGA~~ViTee 217 (354)
T KOG0025|consen 148 AYRMLKDFVQLNKGDSVIQNG-ANSGVGQAVIQLAKALGIKTINVVRDRPNI-------EELKKQLKSLGATEVITEE 217 (354)
T ss_pred HHHHHHHHHhcCCCCeeeecC-cccHHHHHHHHHHHHhCcceEEEeecCccH-------HHHHHHHHHcCCceEecHH
Confidence 444555544322 36777544 456788999999999999999999976531 1235678889999888764
No 92
>PRK12743 oxidoreductase; Provisional
Probab=74.04 E-value=53 Score=29.80 Aligned_cols=54 Identities=17% Similarity=0.102 Sum_probs=33.5
Q ss_pred eEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEEC
Q 019410 123 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 184 (341)
Q Consensus 123 ~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~ 184 (341)
.+|| |+ +|.-|.++|......|.+++++.+...... ..-...++.+|.++..+.
T Consensus 5 vlIt-Ga-s~giG~~~a~~l~~~G~~V~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 58 (256)
T PRK12743 5 AIVT-AS-DSGIGKACALLLAQQGFDIGITWHSDEEGA------KETAEEVRSHGVRAEIRQ 58 (256)
T ss_pred EEEE-CC-CchHHHHHHHHHHHCCCEEEEEeCCChHHH------HHHHHHHHhcCCceEEEE
Confidence 3444 54 478999999999999998877754332100 111334455677776654
No 93
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).
Probab=73.88 E-value=9.9 Score=33.97 Aligned_cols=63 Identities=13% Similarity=0.217 Sum_probs=41.7
Q ss_pred HHHcCCCeEEEeCCCcchHHH-HHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEE
Q 019410 116 AVAQGADCIITIGGIQSNHCR-AAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIE 181 (341)
Q Consensus 116 A~~~g~~~vVt~G~s~GNhg~-AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~ 181 (341)
..+.|.++|+.+| ...|+|. +.|..|..+|++++++.+.......+ .....++.++..|++|+
T Consensus 133 L~~~~i~~lii~G-~~t~~CV~~T~~~a~~~g~~v~v~~Da~~~~~~~--~~~~al~~~~~~G~~i~ 196 (196)
T cd01011 133 LRERGIDRVDVVG-LATDYCVKATALDALKAGFEVRVLEDACRAVDPE--TIERAIEEMKEAGVVLV 196 (196)
T ss_pred HHHCCCCEEEEEE-ecccHHHHHHHHHHHHCCCEEEEeccccCCCCHH--HHHHHHHHHHHccCEEC
Confidence 3467889999776 4556665 67888888999999988765532111 01233666777787763
No 94
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=73.43 E-value=18 Score=27.02 Aligned_cols=33 Identities=27% Similarity=0.315 Sum_probs=27.6
Q ss_pred EEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCC
Q 019410 124 IITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKV 158 (341)
Q Consensus 124 vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~ 158 (341)
|+..|| |..|.-+|...+.+|.+++++.+....
T Consensus 2 vvViGg--G~ig~E~A~~l~~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 2 VVVIGG--GFIGIELAEALAELGKEVTLIERSDRL 34 (80)
T ss_dssp EEEESS--SHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred EEEECc--CHHHHHHHHHHHHhCcEEEEEeccchh
Confidence 444576 799999999999999999999887654
No 95
>cd01012 YcaC_related YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.
Probab=69.12 E-value=22 Score=30.35 Aligned_cols=62 Identities=15% Similarity=0.140 Sum_probs=42.8
Q ss_pred HHcCCCeEEEeCCCcchHH-HHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEE
Q 019410 117 VAQGADCIITIGGIQSNHC-RAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIE 181 (341)
Q Consensus 117 ~~~g~~~vVt~G~s~GNhg-~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~ 181 (341)
++.|.++|+.+|-. .|.| .+.|.-|..+|++++++.+.......+ .....+..|+..|++|.
T Consensus 84 ~~~gi~~lii~G~~-T~~CV~~Ta~~a~~~g~~v~v~~Da~as~~~~--~h~~al~~~~~~~~~v~ 146 (157)
T cd01012 84 KATGRKQVVLAGLE-THVCVLQTALDLLEEGYEVFVVADACGSRSKE--DHELALARMRQAGAVLT 146 (157)
T ss_pred HhcCCCEEEEEEee-ccHHHHHHHHHHHHCCCEEEEEeeCCCCCCHH--HHHHHHHHHHHCCCEEe
Confidence 35688999877644 4555 678888999999999998865532110 01234677778888875
No 96
>PRK11609 nicotinamidase/pyrazinamidase; Provisional
Probab=69.07 E-value=30 Score=31.06 Aligned_cols=64 Identities=16% Similarity=0.241 Sum_probs=43.1
Q ss_pred HHcCCCeEEEeCCCcchHH-HHHHHHHHHcCCeEEEEEcCCCCCcCCCCC-cchhHHHHHhCCCEEEE
Q 019410 117 VAQGADCIITIGGIQSNHC-RAAAVAAKYLNLDCYLILRTSKVLVDQDPG-LIGNLLVERLVGAHIEL 182 (341)
Q Consensus 117 ~~~g~~~vVt~G~s~GNhg-~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~-~~gn~~~~~~~GAeV~~ 182 (341)
.+.|.++||.+|- ..|.| .+.|..|..+|++++|+-+..... +.++. ....+..++..|++|+.
T Consensus 138 ~~~gi~~lii~G~-~T~~CV~~Ta~dA~~~gy~v~v~~Da~a~~-~~~~~~~~~al~~~~~~~~~v~t 203 (212)
T PRK11609 138 REHGITELIVMGL-ATDYCVKFTVLDALALGYQVNVITDGCRGV-NLQPQDSAHAFMEMSAAGATLYT 203 (212)
T ss_pred HHcCCCEEEEEEe-ccCHHHHHHHHHHHHCCCEEEEEeeccCCC-CCCchhHHHHHHHHHHCCCEEEE
Confidence 3578899987764 45655 578899999999999998765532 10111 12246777778888764
No 97
>PF11814 DUF3335: Peptidase_C39 like family; InterPro: IPR021770 This family of proteins are functionally uncharacterised. This family is only found in bacteria. This presumed domain is typically between 226 to 230 amino acids in length.
Probab=66.55 E-value=17 Score=33.34 Aligned_cols=43 Identities=16% Similarity=0.037 Sum_probs=32.6
Q ss_pred HHHcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCC
Q 019410 116 AVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKV 158 (341)
Q Consensus 116 A~~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~ 158 (341)
.+.+.+++|...+|-.|=+-.+||.+|++.|+++.+++....|
T Consensus 37 ~lWREATTifmtsGhGGC~P~GLAlAA~rrG~~vev~~~~~~p 79 (207)
T PF11814_consen 37 RLWREATTIFMTSGHGGCGPFGLALAAARRGFKVEVWVSTDGP 79 (207)
T ss_pred HHHHHhceecccCCCCCcChHHHHHHHHHcCCceEEEECCCCC
Confidence 3455678887444455667889999999999999999986654
No 98
>PRK07478 short chain dehydrogenase; Provisional
Probab=65.07 E-value=86 Score=28.28 Aligned_cols=32 Identities=31% Similarity=0.155 Sum_probs=23.1
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcC
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 155 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~ 155 (341)
..+|| |+ +|.-|.++|..-.+.|.+++++.+.
T Consensus 8 ~~lIt-Ga-s~giG~~ia~~l~~~G~~v~~~~r~ 39 (254)
T PRK07478 8 VAIIT-GA-SSGIGRAAAKLFAREGAKVVVGARR 39 (254)
T ss_pred EEEEe-CC-CChHHHHHHHHHHHCCCEEEEEeCC
Confidence 34454 54 4788999999999999987776543
No 99
>PTZ00331 alpha/beta hydrolase; Provisional
Probab=64.74 E-value=29 Score=31.48 Aligned_cols=62 Identities=13% Similarity=0.170 Sum_probs=42.6
Q ss_pred HHcCCCeEEEeCCCcchHHH-HHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEE
Q 019410 117 VAQGADCIITIGGIQSNHCR-AAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIE 181 (341)
Q Consensus 117 ~~~g~~~vVt~G~s~GNhg~-AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~ 181 (341)
++.|.++|+.+| ...|+|. ..|.-+..+|++++|+.+.......+ ....-+..++..|++|+
T Consensus 142 ~~~gi~~lvi~G-~~t~~CV~~Ta~~a~~~g~~v~vv~Da~~~~~~~--~~~~al~~~~~~g~~v~ 204 (212)
T PTZ00331 142 KAHGVRRVFICG-LAFDFCVLFTALDAVKLGFKVVVLEDATRAVDPD--AISKQRAELLEAGVILL 204 (212)
T ss_pred HHCCCCEEEEEE-eccCHHHHHHHHHHHHCCCEEEEeCcCccCCCHH--HHHHHHHHHHHCCCEEE
Confidence 456889998776 4566765 67888888999999988765532111 11233677788898875
No 100
>PLN03032 serine decarboxylase; Provisional
Probab=64.73 E-value=67 Score=31.97 Aligned_cols=52 Identities=15% Similarity=0.079 Sum_probs=31.8
Q ss_pred eEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEEC
Q 019410 123 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 184 (341)
Q Consensus 123 ~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~ 184 (341)
.++|.|||.+|.. |+.. ++...-+.+++++.... ....+.++.+|.+++.++
T Consensus 88 G~fTsGGTEaNl~-al~~-ar~~~~~~~vi~s~~~H--------~Sv~kaa~~lg~~~~~V~ 139 (374)
T PLN03032 88 GYITTCGTEGNLH-GILV-GREVFPDGILYASRESH--------YSVFKAARMYRMEAVKVP 139 (374)
T ss_pred EEEeCchHHHHHH-HHHH-HHHhCCCcEEEeCCCce--------eHHHHHHHHcCCCCeEee
Confidence 4889999999973 3322 22221224677776542 224667788888876665
No 101
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=64.49 E-value=82 Score=26.16 Aligned_cols=57 Identities=21% Similarity=0.142 Sum_probs=34.2
Q ss_pred EEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECC
Q 019410 124 IITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISK 185 (341)
Q Consensus 124 vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~ 185 (341)
++..|++ +.-|+++|..-.+.|-+.++++...... +........++..|.++..+.-
T Consensus 3 ~lItGa~-~giG~~~a~~l~~~g~~~v~~~~r~~~~----~~~~~l~~~l~~~~~~~~~~~~ 59 (167)
T PF00106_consen 3 VLITGAS-SGIGRALARALARRGARVVILTSRSEDS----EGAQELIQELKAPGAKITFIEC 59 (167)
T ss_dssp EEEETTT-SHHHHHHHHHHHHTTTEEEEEEESSCHH----HHHHHHHHHHHHTTSEEEEEES
T ss_pred EEEECCC-CHHHHHHHHHHHhcCceEEEEeeecccc----cccccccccccccccccccccc
Confidence 3434544 7999999999999977666665544100 0001123445667788777763
No 102
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=64.42 E-value=40 Score=27.08 Aligned_cols=16 Identities=31% Similarity=0.526 Sum_probs=9.6
Q ss_pred CCCEEEEcCCchhHHH
Q 019410 246 KFDDIVVACGSGGTIA 261 (341)
Q Consensus 246 ~~D~Ivv~vGtGGt~a 261 (341)
.+|.||-++|++.++.
T Consensus 58 ~~d~vid~~g~~~~~~ 73 (130)
T PF00107_consen 58 GVDVVIDCVGSGDTLQ 73 (130)
T ss_dssp SEEEEEESSSSHHHHH
T ss_pred cceEEEEecCcHHHHH
Confidence 4666666666655543
No 103
>PRK07109 short chain dehydrogenase; Provisional
Probab=63.18 E-value=1.5e+02 Score=28.60 Aligned_cols=54 Identities=22% Similarity=0.150 Sum_probs=35.4
Q ss_pred eEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECC
Q 019410 123 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISK 185 (341)
Q Consensus 123 ~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~ 185 (341)
.+|| |+ +|--|.++|....+.|.+++++.+.... .......++..|+++..+.-
T Consensus 11 vlIT-Ga-s~gIG~~la~~la~~G~~Vvl~~R~~~~-------l~~~~~~l~~~g~~~~~v~~ 64 (334)
T PRK07109 11 VVIT-GA-SAGVGRATARAFARRGAKVVLLARGEEG-------LEALAAEIRAAGGEALAVVA 64 (334)
T ss_pred EEEE-CC-CCHHHHHHHHHHHHCCCEEEEEECCHHH-------HHHHHHHHHHcCCcEEEEEe
Confidence 3444 54 4789999999999999998777654221 01123445667888876653
No 104
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes. Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate (3.3.2.1 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1XN4_A 3KL2_F 1YZV_A 3IRV_A 1IM5_A 1ILW_A 3PL1_A 1NF9_A 1NF8_A 1X9G_A ....
Probab=62.71 E-value=13 Score=31.91 Aligned_cols=65 Identities=17% Similarity=0.049 Sum_probs=41.4
Q ss_pred HHHcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEE
Q 019410 116 AVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 182 (341)
Q Consensus 116 A~~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~ 182 (341)
.+++|.++|+.+|-....--.+.|..|..+|++++++.+.......+ . ....+..++..|++|+.
T Consensus 107 L~~~gi~~vil~G~~t~~CV~~Ta~~a~~~g~~v~v~~Da~~~~~~~-~-h~~~l~~l~~~~~~v~t 171 (174)
T PF00857_consen 107 LRKRGIDTVILCGVATDVCVLATARDAFDRGYRVIVVEDACASYSPE-A-HEAALEELRKRGAEVIT 171 (174)
T ss_dssp HHHTTESEEEEEEESTTTHHHHHHHHHHHTT-EEEEEEEEEEBSSHH-H-HHHHHHHHHHHTSEEE-
T ss_pred ccccccceEEEcccccCcEEehhHHHHHHCCCEEEEEChhhcCCCHH-H-HHHHHHHHHhCCCEEEe
Confidence 34578899987765443444678889999999999998754421110 0 12346677777888764
No 105
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=62.45 E-value=14 Score=33.16 Aligned_cols=27 Identities=22% Similarity=0.037 Sum_probs=21.4
Q ss_pred CcchHHHHHHHHHHHcCCeEEEEEcCC
Q 019410 130 IQSNHCRAAAVAAKYLNLDCYLILRTS 156 (341)
Q Consensus 130 s~GNhg~AlA~aa~~~Gl~~~ivvp~~ 156 (341)
|+|-+|.++|..+..+|..++++....
T Consensus 27 SSG~~G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 27 SSGKMGAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp --SHHHHHHHHHHHHTT-EEEEEE-TT
T ss_pred CcCHHHHHHHHHHHHCCCEEEEEecCc
Confidence 679999999999999999999998763
No 106
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=61.81 E-value=12 Score=32.20 Aligned_cols=30 Identities=23% Similarity=0.098 Sum_probs=25.4
Q ss_pred EEeCCCcchHHHHHHHHHHHcCCeEEEEEcCC
Q 019410 125 ITIGGIQSNHCRAAAVAAKYLNLDCYLILRTS 156 (341)
Q Consensus 125 Vt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~ 156 (341)
...|+ ||.|.|+|...+..|.++.++.++.
T Consensus 3 ~ViGa--G~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 3 AVIGA--GNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEESS--SHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred EEECc--CHHHHHHHHHHHHcCCEEEEEeccH
Confidence 34565 8999999999999999999998753
No 107
>PRK05866 short chain dehydrogenase; Provisional
Probab=61.56 E-value=92 Score=29.27 Aligned_cols=32 Identities=22% Similarity=0.112 Sum_probs=23.5
Q ss_pred eEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcC
Q 019410 123 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 155 (341)
Q Consensus 123 ~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~ 155 (341)
+++..|+ +|.-|.++|......|.+++++.+.
T Consensus 42 ~vlItGa-sggIG~~la~~La~~G~~Vi~~~R~ 73 (293)
T PRK05866 42 RILLTGA-SSGIGEAAAEQFARRGATVVAVARR 73 (293)
T ss_pred EEEEeCC-CcHHHHHHHHHHHHCCCEEEEEECC
Confidence 3443454 4789999999999999988777654
No 108
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=60.39 E-value=25 Score=31.60 Aligned_cols=47 Identities=15% Similarity=0.144 Sum_probs=36.3
Q ss_pred CCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEEC
Q 019410 129 GIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 184 (341)
Q Consensus 129 ~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~ 184 (341)
|..|+.|..++.+....+.++.++++... ......++..|++++..+
T Consensus 5 GatG~~G~~v~~~L~~~~~~V~~l~R~~~---------~~~~~~l~~~g~~vv~~d 51 (233)
T PF05368_consen 5 GATGNQGRSVVRALLSAGFSVRALVRDPS---------SDRAQQLQALGAEVVEAD 51 (233)
T ss_dssp TTTSHHHHHHHHHHHHTTGCEEEEESSSH---------HHHHHHHHHTTTEEEES-
T ss_pred CCccHHHHHHHHHHHhCCCCcEEEEeccc---------hhhhhhhhcccceEeecc
Confidence 34689999999999999999999998653 123566778899987544
No 109
>PRK08643 acetoin reductase; Validated
Probab=59.38 E-value=1.3e+02 Score=27.01 Aligned_cols=31 Identities=13% Similarity=0.020 Sum_probs=22.7
Q ss_pred eEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcC
Q 019410 123 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 155 (341)
Q Consensus 123 ~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~ 155 (341)
.+|| |+ +|.-|.++|......|.+++++-+.
T Consensus 5 ~lIt-Ga-s~giG~~la~~l~~~G~~v~~~~r~ 35 (256)
T PRK08643 5 ALVT-GA-GQGIGFAIAKRLVEDGFKVAIVDYN 35 (256)
T ss_pred EEEE-CC-CChHHHHHHHHHHHCCCEEEEEeCC
Confidence 3444 54 4679999999999999987766543
No 110
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=59.17 E-value=1.6e+02 Score=30.24 Aligned_cols=130 Identities=16% Similarity=0.035 Sum_probs=70.3
Q ss_pred HHHHHHHHcCCeEEEEE-------cCCCCCcCCCCCcchhHHHHHhCCCEEEEECCc----cccccCcHHHHHHHHHHHH
Q 019410 137 AAAVAAKYLNLDCYLIL-------RTSKVLVDQDPGLIGNLLVERLVGAHIELISKE----EYSKIGSVTLTNILKEKLL 205 (341)
Q Consensus 137 AlA~aa~~~Gl~~~ivv-------p~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~----~~~~~~~~~~~~~~a~~l~ 205 (341)
.+..+|+..|+++++.. ....|... ....+.....-|++.+..+.+ .|-. .....+.+++++.+
T Consensus 261 ~ii~aaraag~pvi~atqmLeSM~~~p~PTRA----e~~dv~~~v~~G~d~v~ls~eta~G~yP~-~~v~~m~~I~~~~E 335 (473)
T TIGR01064 261 KMIRKCNRAGKPVITATQMLDSMIKNPRPTRA----EVSDVANAILDGTDAVMLSGETAKGKYPV-EAVKMMAKIAKEAE 335 (473)
T ss_pred HHHHHHHHcCCCEEEEChhhhhhhcCCCCCcc----cHHHHHHHHHcCCCEEEEcchhhcCCCHH-HHHHHHHHHHHHHH
Confidence 45678899999988765 33332211 123456666679998888653 2211 01123344444433
Q ss_pred HhCCCc-EE-eCC--CCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcCCCCCeEEEEee
Q 019410 206 KEGRRP-YV-IPV--GGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSV 281 (341)
Q Consensus 206 ~~g~~~-~~-ip~--g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~~~~~rVigVe~ 281 (341)
+..... ++ .+. ..............+.++.+.+ ..++||+.+-||.|+.-++++ .|++.|+++..
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~ia~~a~~~a~~~-------~akaIVv~T~SG~TA~~vSr~----rp~~PIiAvT~ 404 (473)
T TIGR01064 336 KALAYLTNFNDRKNSDPKPSTITEAIALSAVEAAEKL-------DAKAIVVLTESGRTARLLSKY----RPNAPIIAVTP 404 (473)
T ss_pred hccchhhhhhhhhcccccCCChHHHHHHHHHHHHhhc-------CCCEEEEEcCChHHHHHHHhh----CCCCCEEEEcC
Confidence 211000 01 010 0000011123334455666655 378999999999998776653 58899999875
Q ss_pred C
Q 019410 282 C 282 (341)
Q Consensus 282 ~ 282 (341)
.
T Consensus 405 ~ 405 (473)
T TIGR01064 405 N 405 (473)
T ss_pred C
Confidence 4
No 111
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=59.10 E-value=1.1e+02 Score=26.57 Aligned_cols=72 Identities=17% Similarity=0.060 Sum_probs=45.8
Q ss_pred HHHHHHHHHcCCCeEEEeCCCcchHHHHHHHHHHHc-CCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCc
Q 019410 110 EFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYL-NLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKE 186 (341)
Q Consensus 110 ~~ll~~A~~~g~~~vVt~G~s~GNhg~AlA~aa~~~-Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~ 186 (341)
..++..+.+.+ ..|...|++.+....+.+...+++ |++++-+.+..... .+ ...-++.++..+++++++.-+
T Consensus 38 ~~l~~~~~~~~-~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~-~~---~~~i~~~I~~~~pdiv~vglG 110 (172)
T PF03808_consen 38 PDLLRRAEQRG-KRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDE-EE---EEAIINRINASGPDIVFVGLG 110 (172)
T ss_pred HHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCh-hh---HHHHHHHHHHcCCCEEEEECC
Confidence 34455555554 356667888877777777777776 77777666543311 11 123467778888898888754
No 112
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=57.92 E-value=1.4e+02 Score=27.22 Aligned_cols=33 Identities=9% Similarity=0.015 Sum_probs=23.9
Q ss_pred CCeEEEeCCC-cchHHHHHHHHHHHcCCeEEEEEc
Q 019410 121 ADCIITIGGI-QSNHCRAAAVAAKYLNLDCYLILR 154 (341)
Q Consensus 121 ~~~vVt~G~s-~GNhg~AlA~aa~~~Gl~~~ivvp 154 (341)
...+|| |++ ++--|.++|....+.|.++++...
T Consensus 7 k~~lIt-Gas~~~GIG~aia~~la~~G~~v~~~~~ 40 (258)
T PRK07370 7 KKALVT-GIANNRSIAWGIAQQLHAAGAELGITYL 40 (258)
T ss_pred cEEEEe-CCCCCCchHHHHHHHHHHCCCEEEEEec
Confidence 334555 554 467999999999999999876643
No 113
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=56.39 E-value=1.4e+02 Score=26.87 Aligned_cols=33 Identities=15% Similarity=0.068 Sum_probs=23.7
Q ss_pred CCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEc
Q 019410 120 GADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 154 (341)
Q Consensus 120 g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp 154 (341)
+...+|| |+ +|.-|.++|....+.|.+++++-+
T Consensus 9 ~k~~lIt-Ga-s~giG~~ia~~L~~~G~~vvl~~r 41 (254)
T PRK08085 9 GKNILIT-GS-AQGIGFLLATGLAEYGAEIIINDI 41 (254)
T ss_pred CCEEEEE-CC-CChHHHHHHHHHHHcCCEEEEEcC
Confidence 3344555 44 468999999999999987776644
No 114
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=56.09 E-value=1.8e+02 Score=27.28 Aligned_cols=125 Identities=14% Similarity=0.047 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECC-ccccccCcHHHHHHHHHHHHHhCCCc
Q 019410 133 NHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISK-EEYSKIGSVTLTNILKEKLLKEGRRP 211 (341)
Q Consensus 133 Nhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~-~~~~~~~~~~~~~~~a~~l~~~g~~~ 211 (341)
.....+|.+.+..|.++.++ +.+.. .......+.++.+...+.. +... ......+.+.+...+ ..
T Consensus 18 t~a~~la~~l~~~g~~vl~i-D~D~~--------n~~~~~~~~l~~~~~~i~~~~~i~----~r~fD~Lve~i~~~~-~d 83 (241)
T PRK13886 18 FIAATIAQYKASKGQKPLCI-DTDPV--------NATFEGYKALNVRRLNIMDGDEIN----TRNFDALVEMIASTE-GD 83 (241)
T ss_pred HHHHHHHHHHHhCCCCEEEE-ECCCC--------CchhhhHHhcCCcceecccCCccc----hhhHHHHHHHHhccC-CC
Confidence 44677788888899987655 33221 1123334556655433322 1111 112234444444333 34
Q ss_pred EEeCCCCCchhHHHHH--HHHHHHHHHHHhcCCCCCCCCEEEEcCCch-----hHHHHHHHHHhcCCCCCeEEE
Q 019410 212 YVIPVGGSNSIGTWGY--IEAIKEIEQQLQTGTGGVKFDDIVVACGSG-----GTIAGLSLGSWLGTLKAKVHA 278 (341)
Q Consensus 212 ~~ip~g~~n~~~~~G~--~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtG-----Gt~aGl~~~~k~~~~~~rVig 278 (341)
.++..+.++-.+...| .....|++++.+ .+.++..+=+| -|+.|+..-+.....++++|.
T Consensus 84 vIIDngAs~~~~l~~yl~~n~l~~ll~e~g-------~~lvvh~vi~gg~~~~dtl~~~~~l~~~~~~~~~~Vv 150 (241)
T PRK13886 84 VIIDNGASSFVPLSHYLISNQVPALLQDMG-------HELVVHTVVTGGQALLDTVSGFAQLASQFPAECLFVV 150 (241)
T ss_pred EEEECCCcchHHHHHHHHhCcHHHHHHHCC-------ceEEEEEEECCCcccHHHHHHHHHHHHHcCCCceEEE
Confidence 6676666666666666 233456666653 44455444444 477777655555444566655
No 115
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=55.99 E-value=38 Score=32.44 Aligned_cols=48 Identities=13% Similarity=-0.019 Sum_probs=33.7
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEE
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 182 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~ 182 (341)
++|+..|+ |-.|.+++..|+.+|.+.+++.+.. .+.++++.+||+.++
T Consensus 167 ~~VlV~G~--g~iG~~a~~~a~~~G~~vi~~~~~~-----------~~~~~a~~~Ga~~vi 214 (329)
T TIGR02822 167 GRLGLYGF--GGSAHLTAQVALAQGATVHVMTRGA-----------AARRLALALGAASAG 214 (329)
T ss_pred CEEEEEcC--CHHHHHHHHHHHHCCCeEEEEeCCh-----------HHHHHHHHhCCceec
Confidence 45555553 6789999999999999754443321 258889999997543
No 116
>cd01013 isochorismatase Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological systems. Isochorismatase is part of the phenazine biosynthesis pathway. Phenazines are antimicrobial compounds that provide the competitive advantage for certain bacteria.
Probab=55.93 E-value=37 Score=30.45 Aligned_cols=64 Identities=16% Similarity=0.082 Sum_probs=40.1
Q ss_pred HHcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEE
Q 019410 117 VAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 182 (341)
Q Consensus 117 ~~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~ 182 (341)
++.|.++||.+|-....-..+.|.-|..+|++++++-+.......+ .....+..++..+|+|+-
T Consensus 138 r~~gi~~lii~Gv~T~~CV~~Ta~~A~~~Gy~v~vv~Da~as~~~~--~h~~al~~l~~~~a~v~~ 201 (203)
T cd01013 138 KESGRDQLIITGVYAHIGCLSTAVDAFMRDIQPFVVADAIADFSLE--EHRMALKYAATRCAMVVS 201 (203)
T ss_pred HHcCCCEEEEEEeccChhHHHHHHHHHHCCCeEEEeccccCCCCHH--HHHHHHHHHHhheeEeee
Confidence 4678899987765443344577888999999998887765532111 012235555556666653
No 117
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=55.68 E-value=43 Score=31.17 Aligned_cols=49 Identities=16% Similarity=0.029 Sum_probs=34.3
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEE
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 182 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~ 182 (341)
++|+..|+ |.-|..++..|+.+|.+.++++... ..+..+++.+|++.++
T Consensus 122 ~~VlV~G~--G~vG~~~~~~ak~~G~~~Vi~~~~~----------~~r~~~a~~~Ga~~~i 170 (280)
T TIGR03366 122 RRVLVVGA--GMLGLTAAAAAAAAGAARVVAADPS----------PDRRELALSFGATALA 170 (280)
T ss_pred CEEEEECC--CHHHHHHHHHHHHcCCCEEEEECCC----------HHHHHHHHHcCCcEec
Confidence 45555554 7899999999999999855555322 1357788889986543
No 118
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=55.49 E-value=55 Score=28.61 Aligned_cols=101 Identities=15% Similarity=0.041 Sum_probs=55.0
Q ss_pred HHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCccccccCcHHHHHHHHHHHHHhCCCcEEe
Q 019410 135 CRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVI 214 (341)
Q Consensus 135 g~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~a~~l~~~g~~~~~i 214 (341)
|..+..+++.+|.+..--++...- ...-+..+...|-.|.+++... +.++++++.+.++.++.-++
T Consensus 13 G~~i~~~~~~~g~~~~~rv~g~dl-------~~~l~~~~~~~~~~ifllG~~~-------~~~~~~~~~l~~~yP~l~iv 78 (172)
T PF03808_consen 13 GMPIVWAARLLGRPLPERVTGSDL-------FPDLLRRAEQRGKRIFLLGGSE-------EVLEKAAANLRRRYPGLRIV 78 (172)
T ss_pred CHHHHHHHHHcCCCCCcccCHHHH-------HHHHHHHHHHcCCeEEEEeCCH-------HHHHHHHHHHHHHCCCeEEE
Confidence 478899999999876322221110 0112444455677898887532 23455566677665443332
Q ss_pred C--CCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHH
Q 019410 215 P--VGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTI 260 (341)
Q Consensus 215 p--~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~ 260 (341)
- .++-++. --.+|.+++.. ..+|.|+++.|+-.-=
T Consensus 79 g~~~g~f~~~-------~~~~i~~~I~~----~~pdiv~vglG~PkQE 115 (172)
T PF03808_consen 79 GYHHGYFDEE-------EEEAIINRINA----SGPDIVFVGLGAPKQE 115 (172)
T ss_pred EecCCCCChh-------hHHHHHHHHHH----cCCCEEEEECCCCHHH
Confidence 1 1111111 12344455542 4699999999987654
No 119
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=55.11 E-value=1.8e+02 Score=27.09 Aligned_cols=47 Identities=9% Similarity=-0.019 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHc--CCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEc
Q 019410 106 VRKLEFLMADAVAQ--GADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 154 (341)
Q Consensus 106 ~Rkl~~ll~~A~~~--g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp 154 (341)
..+....+.....+ +++.||..... +....+-..++..|++++++-.
T Consensus 42 ~~~~~~~i~~~~~~~~~vdgiIi~~~~--~~~~~~~~~~~~~giPvV~~~~ 90 (305)
T cd06324 42 RFLMLQQARTILQRPDKPDALIFTNEK--SVAPELLRLAEGAGVKLFLVNS 90 (305)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEcCCc--cchHHHHHHHHhCCCeEEEEec
Confidence 34455567777788 89998875322 2233334567779999888754
No 120
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=54.95 E-value=15 Score=33.15 Aligned_cols=86 Identities=14% Similarity=0.070 Sum_probs=55.8
Q ss_pred CCCCEEEEcCCchhHHHHHHHHHhcCCCCCeEEEEeeCCCCc-cchHhHHHHh-------hcccC----CCCCCceEEec
Q 019410 245 VKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPD-YFYDYTQGLL-------DGLNA----GVDSRDIVNIQ 312 (341)
Q Consensus 245 ~~~D~Ivv~vGtGGt~aGl~~~~k~~~~~~rVigVe~~g~~~-~~~~~i~~l~-------~~~~~----~~~~~~iv~v~ 312 (341)
..++.++.-+|.|+-..++-.+ ..+|+.||+++|-..... ...+..+++. .+-++ +...-|.+-|-
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a--~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFIG 109 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWA--LAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFIG 109 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHH--HhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEEEC
Confidence 4677788888887777766655 467999999998765432 2222222221 11111 22223667777
Q ss_pred cchHHHHHHHHHHHHHhcCC
Q 019410 313 NVSVYMTFKNILMNILMNGK 332 (341)
Q Consensus 313 d~~~~~~~~~~~~~~~~~~~ 332 (341)
-+.....+...+|+-|+.|-
T Consensus 110 Gg~~i~~ile~~~~~l~~gg 129 (187)
T COG2242 110 GGGNIEEILEAAWERLKPGG 129 (187)
T ss_pred CCCCHHHHHHHHHHHcCcCC
Confidence 77899999999999988763
No 121
>PRK08278 short chain dehydrogenase; Provisional
Probab=53.80 E-value=1.8e+02 Score=26.72 Aligned_cols=32 Identities=22% Similarity=0.156 Sum_probs=24.4
Q ss_pred eEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCC
Q 019410 123 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTS 156 (341)
Q Consensus 123 ~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~ 156 (341)
.+|| |+ +|--|.++|....+.|.+++++.+..
T Consensus 9 vlIt-Ga-s~gIG~~ia~~l~~~G~~V~~~~r~~ 40 (273)
T PRK08278 9 LFIT-GA-SRGIGLAIALRAARDGANIVIAAKTA 40 (273)
T ss_pred EEEE-CC-CchHHHHHHHHHHHCCCEEEEEeccc
Confidence 3444 54 46889999999999999988876643
No 122
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=52.65 E-value=1.7e+02 Score=25.92 Aligned_cols=66 Identities=20% Similarity=0.144 Sum_probs=44.1
Q ss_pred HHHHHHHcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCC-CCCcCCCCCcchhHHHHHhCCCEEEEECC
Q 019410 112 LMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTS-KVLVDQDPGLIGNLLVERLVGAHIELISK 185 (341)
Q Consensus 112 ll~~A~~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~-~~~~~~~~~~~gn~~~~~~~GAeV~~v~~ 185 (341)
.++.+.+.|++-|+..+-+...+-..+...|+++|+++.+-+... ++ ....+.+..+|++++.+..
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~t~--------~~~~~~~~~~g~d~v~~~p 134 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVADDATIKGAVKAAKKHGKEVQVDLINVKDK--------VKRAKELKELGADYIGVHT 134 (206)
T ss_pred HHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEEEecCCCCh--------HHHHHHHHHcCCCEEEEcC
Confidence 467778889998876654332345677778999999998876432 21 1234555667999888764
No 123
>PRK05876 short chain dehydrogenase; Provisional
Probab=51.77 E-value=1.7e+02 Score=27.01 Aligned_cols=54 Identities=17% Similarity=0.020 Sum_probs=32.1
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEEC
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 184 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~ 184 (341)
..+|| |+ +|--|.++|..-.+.|.+++++.+.... . ..-...++..|.++..+.
T Consensus 8 ~vlVT-Ga-s~gIG~ala~~La~~G~~Vv~~~r~~~~-l------~~~~~~l~~~~~~~~~~~ 61 (275)
T PRK05876 8 GAVIT-GG-ASGIGLATGTEFARRGARVVLGDVDKPG-L------RQAVNHLRAEGFDVHGVM 61 (275)
T ss_pred EEEEe-CC-CchHHHHHHHHHHHCCCEEEEEeCCHHH-H------HHHHHHHHhcCCeEEEEe
Confidence 34555 54 4788999999999999987665433211 0 111233445576665554
No 124
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=48.75 E-value=69 Score=32.39 Aligned_cols=57 Identities=16% Similarity=0.274 Sum_probs=39.1
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEE
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELI 183 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v 183 (341)
+.||..|| ||.|.-+|..+.++|.+++++.+...... +.....+..++..|.++++-
T Consensus 273 k~VvVIGg--G~~a~d~A~~l~~~G~~Vtlv~~~~~~~~---~~~~~~~~~l~~~GV~~~~~ 329 (449)
T TIGR01316 273 KSVVVIGG--GNTAVDSARTALRLGAEVHCLYRRTREDM---TARVEEIAHAEEEGVKFHFL 329 (449)
T ss_pred CeEEEECC--CHHHHHHHHHHHHcCCEEEEEeecCcccC---CCCHHHHHHHHhCCCEEEec
Confidence 45666776 89999999999999999888877542110 11122345667788887643
No 125
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=48.55 E-value=1.6e+02 Score=25.72 Aligned_cols=119 Identities=13% Similarity=-0.017 Sum_probs=61.8
Q ss_pred HHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCccccccCcHHHHHHHHHHHHHhCCCcEEe
Q 019410 135 CRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVI 214 (341)
Q Consensus 135 g~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~a~~l~~~g~~~~~i 214 (341)
|..++.+++.+|.+..--++...- ...-+..+...+..|.+++... +.++++++.+.+..++.-++
T Consensus 11 G~~l~~~~~~~~~~~~~r~~g~dl-------~~~ll~~~~~~~~~v~llG~~~-------~~~~~~~~~l~~~yp~l~i~ 76 (171)
T cd06533 11 GIGVVWAARLLGGPLPERVTGSDL-------MPALLELAAQKGLRVFLLGAKP-------EVLEKAAERLRARYPGLKIV 76 (171)
T ss_pred cHHHHHHHHHcCCCCCcccCcHHH-------HHHHHHHHHHcCCeEEEECCCH-------HHHHHHHHHHHHHCCCcEEE
Confidence 578999999999873222222110 0112334445578899997532 23455556666654443333
Q ss_pred C--CCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcCCCCCeEEEE
Q 019410 215 P--VGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAF 279 (341)
Q Consensus 215 p--~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~~~~~rVigV 279 (341)
- .++.++. .-.++.+++.. ..+|.|+++.|+---=. .+...+...+..-+++|
T Consensus 77 g~~~g~~~~~-------~~~~i~~~I~~----~~pdiv~vglG~PkQE~-~~~~~~~~l~~~v~~~v 131 (171)
T cd06533 77 GYHHGYFGPE-------EEEEIIERINA----SGADILFVGLGAPKQEL-WIARHKDRLPVPVAIGV 131 (171)
T ss_pred EecCCCCChh-------hHHHHHHHHHH----cCCCEEEEECCCCHHHH-HHHHHHHHCCCCEEEEe
Confidence 1 1111111 11235555553 46999999999876543 22333333333344443
No 126
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=48.54 E-value=2.1e+02 Score=25.82 Aligned_cols=33 Identities=9% Similarity=0.116 Sum_probs=24.3
Q ss_pred eEEEeCCCc-chHHHHHHHHHHHcCCeEEEEEcC
Q 019410 123 CIITIGGIQ-SNHCRAAAVAAKYLNLDCYLILRT 155 (341)
Q Consensus 123 ~vVt~G~s~-GNhg~AlA~aa~~~Gl~~~ivvp~ 155 (341)
+++..|++. |.-|.++|..-...|.+.+++.+.
T Consensus 7 ~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~ 40 (256)
T PRK12748 7 IALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWS 40 (256)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCC
Confidence 344446664 689999999999999987777554
No 127
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=48.53 E-value=48 Score=30.36 Aligned_cols=45 Identities=22% Similarity=0.126 Sum_probs=28.4
Q ss_pred HHHHHHHHhcCCCCCCCCEEE-EcCCchhHHHHHHHHHhcCCCCCeEEEEeeC
Q 019410 231 IKEIEQQLQTGTGGVKFDDIV-VACGSGGTIAGLSLGSWLGTLKAKVHAFSVC 282 (341)
Q Consensus 231 a~EI~~Ql~~~~~g~~~D~Iv-v~vGtGGt~aGl~~~~k~~~~~~rVigVe~~ 282 (341)
.+||+-+++ ||.|+ +.+-.||.+.=.+.-++..+++.+|+||++.
T Consensus 24 ~qeli~~~k-------Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDId 69 (206)
T PF04989_consen 24 YQELIWELK-------PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDID 69 (206)
T ss_dssp HHHHHHHH---------SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-
T ss_pred HHHHHHHhC-------CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCC
Confidence 478887774 88766 5556777776666667778899999999984
No 128
>PRK12937 short chain dehydrogenase; Provisional
Probab=48.52 E-value=1.9e+02 Score=25.52 Aligned_cols=56 Identities=13% Similarity=-0.027 Sum_probs=35.7
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECC
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISK 185 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~ 185 (341)
..+|| |+ +|.-|.++|..-.+.|.+.+++.+...+.. ..-...++.+|.++..+.-
T Consensus 7 ~vlIt-G~-~~~iG~~la~~l~~~g~~v~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 62 (245)
T PRK12937 7 VAIVT-GA-SRGIGAAIARRLAADGFAVAVNYAGSAAAA------DELVAEIEAAGGRAIAVQA 62 (245)
T ss_pred EEEEe-CC-CchHHHHHHHHHHHCCCEEEEecCCCHHHH------HHHHHHHHhcCCeEEEEEC
Confidence 34454 44 479999999999999999877765432100 1123344557888877653
No 129
>cd01015 CSHase N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia. CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.
Probab=48.26 E-value=66 Score=28.02 Aligned_cols=40 Identities=25% Similarity=0.345 Sum_probs=31.5
Q ss_pred HHcCCCeEEEeCCCcchHHH-HHHHHHHHcCCeEEEEEcCCC
Q 019410 117 VAQGADCIITIGGIQSNHCR-AAAVAAKYLNLDCYLILRTSK 157 (341)
Q Consensus 117 ~~~g~~~vVt~G~s~GNhg~-AlA~aa~~~Gl~~~ivvp~~~ 157 (341)
++.|.++||.+| ...|.|. +.|..|..+|++++++-+...
T Consensus 110 ~~~gi~~vvi~G-~~t~~CV~~Ta~~A~~~Gy~v~vv~Da~a 150 (179)
T cd01015 110 TARGVDTLIVAG-CSTSGCIRATAVDAMQHGFRPIVVRECVG 150 (179)
T ss_pred HHcCCCEEEEee-ecccHhHHHHHHHHHHCCCeEEEeecccc
Confidence 467889998775 5557775 889999999999999887654
No 130
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=48.23 E-value=64 Score=30.91 Aligned_cols=49 Identities=18% Similarity=0.073 Sum_probs=34.8
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEE
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 182 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~ 182 (341)
++|+..|+ |--|++.+..|+.+|.+.++++... ..++.+++.+||+.++
T Consensus 171 ~~VlV~G~--G~vG~~aiqlak~~G~~~Vi~~~~~----------~~~~~~a~~lGa~~vi 219 (343)
T PRK09880 171 KRVFVSGV--GPIGCLIVAAVKTLGAAEIVCADVS----------PRSLSLAREMGADKLV 219 (343)
T ss_pred CEEEEECC--CHHHHHHHHHHHHcCCcEEEEEeCC----------HHHHHHHHHcCCcEEe
Confidence 45554553 7899999999999999655554422 1257888899997654
No 131
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=48.20 E-value=28 Score=27.98 Aligned_cols=40 Identities=18% Similarity=0.037 Sum_probs=29.5
Q ss_pred HHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECC
Q 019410 135 CRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISK 185 (341)
Q Consensus 135 g~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~ 185 (341)
|...+..|+.+|.+.+++.+. ..+++.++.+||+.++...
T Consensus 3 G~~a~q~ak~~G~~vi~~~~~-----------~~k~~~~~~~Ga~~~~~~~ 42 (130)
T PF00107_consen 3 GLMAIQLAKAMGAKVIATDRS-----------EEKLELAKELGADHVIDYS 42 (130)
T ss_dssp HHHHHHHHHHTTSEEEEEESS-----------HHHHHHHHHTTESEEEETT
T ss_pred HHHHHHHHHHcCCEEEEEECC-----------HHHHHHHHhhccccccccc
Confidence 678889999999555555442 2368899999988776654
No 132
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=48.09 E-value=2.1e+02 Score=25.71 Aligned_cols=33 Identities=15% Similarity=0.006 Sum_probs=23.9
Q ss_pred CCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcC
Q 019410 121 ADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 155 (341)
Q Consensus 121 ~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~ 155 (341)
...+|| |+ +|.-|.++|....+.|.+++++-+.
T Consensus 12 k~ilIt-Ga-s~~IG~~la~~l~~~G~~v~~~~r~ 44 (256)
T PRK06124 12 QVALVT-GS-ARGLGFEIARALAGAGAHVLVNGRN 44 (256)
T ss_pred CEEEEE-CC-CchHHHHHHHHHHHcCCeEEEEeCC
Confidence 334444 54 5789999999888999987777553
No 133
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=48.00 E-value=63 Score=30.49 Aligned_cols=50 Identities=6% Similarity=0.020 Sum_probs=35.2
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEE
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELI 183 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v 183 (341)
++|+..|+ .|--|.+++..|+.+|.+.+++.+.. .+...++.+|++.++-
T Consensus 140 ~~VLI~ga-~g~vG~~aiqlAk~~G~~Vi~~~~s~-----------~~~~~~~~lGa~~vi~ 189 (325)
T TIGR02825 140 ETVMVNAA-AGAVGSVVGQIAKLKGCKVVGAAGSD-----------EKVAYLKKLGFDVAFN 189 (325)
T ss_pred CEEEEeCC-ccHHHHHHHHHHHHcCCEEEEEeCCH-----------HHHHHHHHcCCCEEEe
Confidence 45655553 37889999999999999866554321 2577788899975443
No 134
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=47.75 E-value=2.1e+02 Score=25.64 Aligned_cols=56 Identities=9% Similarity=-0.056 Sum_probs=35.9
Q ss_pred CCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECC
Q 019410 121 ADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISK 185 (341)
Q Consensus 121 ~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~ 185 (341)
...+|| | .+|.-|.++|......|.+++++.+..... ..-...++..|.++..+..
T Consensus 8 ~~vlIt-G-asg~iG~~la~~l~~~G~~v~~~~r~~~~~-------~~~~~~~~~~~~~~~~~~~ 63 (262)
T PRK13394 8 KTAVVT-G-AASGIGKEIALELARAGAAVAIADLNQDGA-------NAVADEINKAGGKAIGVAM 63 (262)
T ss_pred CEEEEE-C-CCChHHHHHHHHHHHCCCeEEEEeCChHHH-------HHHHHHHHhcCceEEEEEC
Confidence 344555 4 457999999999999999877765543210 1123445567888766653
No 135
>PLN02263 serine decarboxylase
Probab=47.68 E-value=85 Score=32.39 Aligned_cols=54 Identities=13% Similarity=0.005 Sum_probs=36.4
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECC
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISK 185 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~ 185 (341)
.+++|.|||.||...-++ ||..--+.++|++..+.. .-.+.++.+|.+++.++-
T Consensus 154 ~G~vtsGGTEaNL~Al~a--ARe~~~~~vvy~S~~aH~--------Sv~KAa~llgi~~~~Vp~ 207 (470)
T PLN02263 154 WGYITNCGTEGNLHGILV--GREVFPDGILYASRESHY--------SVFKAARMYRMECVKVDT 207 (470)
T ss_pred eEEEeCcHHHHHHHHHHH--HHhhcCCcEEEEcCCccH--------HHHHHHHhcCCcceEecc
Confidence 368888999888753222 344434557888876631 235678889999988874
No 136
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=47.67 E-value=69 Score=30.81 Aligned_cols=50 Identities=14% Similarity=0.135 Sum_probs=35.0
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEE
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIE 181 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~ 181 (341)
++|+..|+ |.-|...+..|+.+|.+++++.+.... ..+..+++.+||+.+
T Consensus 174 ~~vlI~G~--G~vG~~a~q~ak~~G~~vi~~~~~~~~--------~~~~~~~~~~Ga~~v 223 (355)
T cd08230 174 RRALVLGA--GPIGLLAALLLRLRGFEVYVLNRRDPP--------DPKADIVEELGATYV 223 (355)
T ss_pred CEEEEECC--CHHHHHHHHHHHHcCCeEEEEecCCCC--------HHHHHHHHHcCCEEe
Confidence 34444453 889999999999999976665543211 236788899999864
No 137
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=47.61 E-value=2.3e+02 Score=29.52 Aligned_cols=29 Identities=7% Similarity=-0.013 Sum_probs=21.8
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEE
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLI 152 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~iv 152 (341)
++++-+|. |+.|+.+|..-+..|.+++++
T Consensus 418 ~hiiI~G~--G~~G~~la~~L~~~g~~vvvI 446 (558)
T PRK10669 418 NHALLVGY--GRVGSLLGEKLLAAGIPLVVI 446 (558)
T ss_pred CCEEEECC--ChHHHHHHHHHHHCCCCEEEE
Confidence 55666665 799999988888888776555
No 138
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=47.40 E-value=2.1e+02 Score=25.48 Aligned_cols=34 Identities=15% Similarity=0.009 Sum_probs=25.2
Q ss_pred CCCEEEEcCCchhHHHHHHHHHhcCCC----CCeEEEEee
Q 019410 246 KFDDIVVACGSGGTIAGLSLGSWLGTL----KAKVHAFSV 281 (341)
Q Consensus 246 ~~D~Ivv~vGtGGt~aGl~~~~k~~~~----~~rVigVe~ 281 (341)
.+|+||++ +..++.|+..+++..+. ++.|+|++-
T Consensus 178 ~~~ai~~~--~d~~a~g~~~~l~~~g~~vp~di~v~g~d~ 215 (267)
T cd06283 178 KKTAIFAA--NGLILLEVLKALKELGIRIPEDVGLIGFDD 215 (267)
T ss_pred CCCEEEEc--CcHHHHHHHHHHHHcCCCCccceEEEEeCC
Confidence 58999886 45667789999987764 567777663
No 139
>COG3688 Predicted RNA-binding protein containing a PIN domain [General function prediction only]
Probab=47.10 E-value=82 Score=27.82 Aligned_cols=92 Identities=11% Similarity=0.078 Sum_probs=55.3
Q ss_pred HHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCccccccCcHHHHHHHHHHHHHhC-CCcEEe
Q 019410 136 RAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEG-RRPYVI 214 (341)
Q Consensus 136 ~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~a~~l~~~g-~~~~~i 214 (341)
-++|-+...-|++.+||-+...- +|--+....++-+|+++..+.- .+.++++++.++.... +..++.
T Consensus 38 e~l~~Y~s~~g~~iivVFDA~~v--------~g~~~~~~~~~vsvvyT~~~ET----ADs~IEr~~~el~~~~t~~V~Va 105 (173)
T COG3688 38 EALAEYQSFTGYKIIVVFDAHYV--------PGVGREYKNHRVSVVYTKEGET----ADSFIERYVAELRNAATHQVIVA 105 (173)
T ss_pred HHHHHhhcccCceEEEEEEcccc--------ccccccccccceEEEEecCCcc----HHHHHHHHHHHHhccccceEEEE
Confidence 36677778889999999876541 1222334557788888875432 2457788887876322 123333
Q ss_pred CCCCCchhHHHHHHH---HHHHHHHHHh
Q 019410 215 PVGGSNSIGTWGYIE---AIKEIEQQLQ 239 (341)
Q Consensus 215 p~g~~n~~~~~G~~t---~a~EI~~Ql~ 239 (341)
-.+....+.+.|+.. .++|++..+.
T Consensus 106 TSD~~EQ~~Ifg~GA~r~Sarel~~ev~ 133 (173)
T COG3688 106 TSDRAEQWTIFGQGALRMSARELYQEVE 133 (173)
T ss_pred eCchhhhhhhhccchHHHhHHHHHHHHH
Confidence 333344566666543 3778877664
No 140
>PLN02621 nicotinamidase
Probab=46.92 E-value=65 Score=28.69 Aligned_cols=62 Identities=15% Similarity=0.095 Sum_probs=40.4
Q ss_pred HHcCCCeEEEeCCCcchHH-HHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEE
Q 019410 117 VAQGADCIITIGGIQSNHC-RAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIE 181 (341)
Q Consensus 117 ~~~g~~~vVt~G~s~GNhg-~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~ 181 (341)
++.|.++||.+| ...|.| ...|..|..+|++++++.+.......+ .....+..++..+++|.
T Consensus 123 ~~~gi~~lvi~G-v~T~~CV~~Ta~~a~~~gy~v~v~~Da~as~~~~--~h~~al~~~~~~~~~v~ 185 (197)
T PLN02621 123 RKIGVKEVIVTG-VMTNLCCETTAREAFVRGFRVFFSTDATATANEE--LHEATLKNLAYGFAYLV 185 (197)
T ss_pred HHCCCCEEEEEe-cccchhHHHHHHHHHHCCCEEEEeccccCCCCHH--HHHHHHHHHHhhceEee
Confidence 467889998775 455666 467888888999999998765542111 01223556666677764
No 141
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=46.71 E-value=1.4e+02 Score=29.00 Aligned_cols=69 Identities=17% Similarity=0.159 Sum_probs=46.5
Q ss_pred chHhHHHHHHHHHHHHcCCCeEEEeCCCcchHHHHHHHHHHHcCCe--EEEEEcCCCCCcCCCCCcchhHHHHHhCCCEE
Q 019410 103 GNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLD--CYLILRTSKVLVDQDPGLIGNLLVERLVGAHI 180 (341)
Q Consensus 103 gnK~Rkl~~ll~~A~~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~--~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV 180 (341)
|-+.+.++.-+.+ .-|.+.++.+. +|..+.-+|+.+ +|++ -.|++|.-+. ......+...|+++
T Consensus 24 g~~~~~fE~~~a~--~~g~~~~~~~~--sgt~Al~~al~~--l~~~~gdeVi~p~~t~--------~~~~~ai~~~G~~p 89 (363)
T PF01041_consen 24 GPYVEEFEKEFAE--YFGVKYAVAVS--SGTSALHLALRA--LGLGPGDEVIVPAYTF--------PATASAILWAGAEP 89 (363)
T ss_dssp SHHHHHHHHHHHH--HHTSSEEEEES--SHHHHHHHHHHH--TTGGTTSEEEEESSS---------THHHHHHHHTT-EE
T ss_pred CHHHHHHHHHHHH--HhCCCeEEEeC--ChhHHHHHHHHh--cCCCcCceEecCCCcc--------hHHHHHHHHhccEE
Confidence 5677777766655 34777888663 366666666666 6666 6777776553 34688899999999
Q ss_pred EEECC
Q 019410 181 ELISK 185 (341)
Q Consensus 181 ~~v~~ 185 (341)
++++-
T Consensus 90 v~~Di 94 (363)
T PF01041_consen 90 VFVDI 94 (363)
T ss_dssp EEE-B
T ss_pred EEEec
Confidence 99984
No 142
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=46.55 E-value=2.2e+02 Score=25.67 Aligned_cols=30 Identities=10% Similarity=-0.037 Sum_probs=22.3
Q ss_pred eEEEeCCCcchHHHHHHHHHHHcCCeEEEEEc
Q 019410 123 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 154 (341)
Q Consensus 123 ~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp 154 (341)
.+|| |+ ++.-|+++|....+.|.+++++-+
T Consensus 3 vlIt-Ga-s~gIG~aia~~l~~~G~~V~~~~r 32 (259)
T PRK08340 3 VLVT-AS-SRGIGFNVARELLKKGARVVISSR 32 (259)
T ss_pred EEEE-cC-CcHHHHHHHHHHHHcCCEEEEEeC
Confidence 3555 44 468999999999999998766644
No 143
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=46.25 E-value=2.4e+02 Score=25.95 Aligned_cols=32 Identities=13% Similarity=0.048 Sum_probs=22.4
Q ss_pred CeEEEeCCCc-chHHHHHHHHHHHcCCeEEEEEc
Q 019410 122 DCIITIGGIQ-SNHCRAAAVAAKYLNLDCYLILR 154 (341)
Q Consensus 122 ~~vVt~G~s~-GNhg~AlA~aa~~~Gl~~~ivvp 154 (341)
..||| |+++ +.-|+++|....+.|.+++++-+
T Consensus 8 ~~lIT-Gas~~~GIG~aia~~la~~G~~vil~~r 40 (262)
T PRK07984 8 RILVT-GVASKLSIAYGIAQAMHREGAELAFTYQ 40 (262)
T ss_pred EEEEe-CCCCCccHHHHHHHHHHHCCCEEEEEec
Confidence 34455 5554 37888999999999998765543
No 144
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=46.18 E-value=75 Score=29.35 Aligned_cols=42 Identities=26% Similarity=0.203 Sum_probs=29.6
Q ss_pred HHHcC--CCeEEEe--CCCcchHHHHHHHHHHHcCCeEEEEEcCCC
Q 019410 116 AVAQG--ADCIITI--GGIQSNHCRAAAVAAKYLNLDCYLILRTSK 157 (341)
Q Consensus 116 A~~~g--~~~vVt~--G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~ 157 (341)
|++.| ++-+|.. ++...-+.+|||.||++-|=+.++++|+..
T Consensus 35 AlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~ 80 (218)
T PF07279_consen 35 ALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQ 80 (218)
T ss_pred HHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChh
Confidence 34555 4555522 222234789999999999999999999765
No 145
>PRK08303 short chain dehydrogenase; Provisional
Probab=46.10 E-value=2.7e+02 Score=26.42 Aligned_cols=32 Identities=19% Similarity=0.236 Sum_probs=23.6
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcC
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 155 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~ 155 (341)
..||| |++ +--|.++|..-.+.|.+++++-+.
T Consensus 10 ~~lIT-Ggs-~GIG~aia~~la~~G~~Vv~~~r~ 41 (305)
T PRK08303 10 VALVA-GAT-RGAGRGIAVELGAAGATVYVTGRS 41 (305)
T ss_pred EEEEe-CCC-chHHHHHHHHHHHCCCEEEEEecc
Confidence 34454 554 568999999999999988777654
No 146
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=46.03 E-value=2.5e+02 Score=27.64 Aligned_cols=31 Identities=26% Similarity=0.364 Sum_probs=17.1
Q ss_pred EEEEcCCchhH--HHHHHHHHhcCCCCCeEEEEee
Q 019410 249 DIVVACGSGGT--IAGLSLGSWLGTLKAKVHAFSV 281 (341)
Q Consensus 249 ~Ivv~vGtGGt--~aGl~~~~k~~~~~~rVigVe~ 281 (341)
.+|+++|+|.. ++|.+..... ..++++.|.+
T Consensus 86 ~~IIAvGGGsv~D~ak~~A~~~~--rgip~I~IPT 118 (355)
T cd08197 86 SVIVALGGGVVGNIAGLLAALLF--RGIRLVHIPT 118 (355)
T ss_pred cEEEEECCcHHHHHHHHHHHHhc--cCCCEEEecC
Confidence 56777887665 3444333322 3456666665
No 147
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=46.00 E-value=25 Score=34.62 Aligned_cols=33 Identities=24% Similarity=0.257 Sum_probs=23.8
Q ss_pred CEEEEcCCchhHHHHHHHHHhcCCCCCeEEEEeeCC
Q 019410 248 DDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCD 283 (341)
Q Consensus 248 D~Ivv~vGtGGt~aGl~~~~k~~~~~~rVigVe~~g 283 (341)
|-+|+.||.|+.+--+..+.. | ..+|+||+...
T Consensus 61 dK~VlDVGcGtGILS~F~akA--G-A~~V~aVe~S~ 93 (346)
T KOG1499|consen 61 DKTVLDVGCGTGILSMFAAKA--G-ARKVYAVEASS 93 (346)
T ss_pred CCEEEEcCCCccHHHHHHHHh--C-cceEEEEechH
Confidence 679999999966655544332 3 67999999764
No 148
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=45.61 E-value=2.3e+02 Score=25.81 Aligned_cols=31 Identities=16% Similarity=0.112 Sum_probs=23.3
Q ss_pred CeEEEeCC-CcchHHHHHHHHHHHcCCeEEEEE
Q 019410 122 DCIITIGG-IQSNHCRAAAVAAKYLNLDCYLIL 153 (341)
Q Consensus 122 ~~vVt~G~-s~GNhg~AlA~aa~~~Gl~~~ivv 153 (341)
..+|| |+ +++--|+++|....+.|.++++.-
T Consensus 8 ~~lIT-Ga~~~~GIG~a~a~~l~~~G~~v~~~~ 39 (261)
T PRK08690 8 KILIT-GMISERSIAYGIAKACREQGAELAFTY 39 (261)
T ss_pred EEEEE-CCCCCCcHHHHHHHHHHHCCCEEEEEc
Confidence 34555 54 356789999999999999987754
No 149
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=45.14 E-value=1.4e+02 Score=31.18 Aligned_cols=51 Identities=20% Similarity=0.021 Sum_probs=37.2
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECC
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISK 185 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~ 185 (341)
.+++..|+ |..|++.+..++.+|..++++ ... ..+++..+.+|++.+.++.
T Consensus 165 akVlViGa--G~iGl~Aa~~ak~lGA~V~v~-d~~----------~~rle~a~~lGa~~v~v~~ 215 (511)
T TIGR00561 165 AKVLVIGA--GVAGLAAIGAANSLGAIVRAF-DTR----------PEVKEQVQSMGAEFLELDF 215 (511)
T ss_pred CEEEEECC--CHHHHHHHHHHHHCCCEEEEE-eCC----------HHHHHHHHHcCCeEEeccc
Confidence 45555665 899999999999999874444 322 1257788889999877763
No 150
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=44.60 E-value=2.4e+02 Score=25.46 Aligned_cols=55 Identities=18% Similarity=0.105 Sum_probs=33.6
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEEC
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 184 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~ 184 (341)
..+|| |+ +|.-|.++|....+.|.+++++.+...+.. ......++..|.++..+.
T Consensus 9 ~~lIt-Ga-~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~------~~~~~~l~~~~~~~~~~~ 63 (261)
T PRK08936 9 VVVIT-GG-STGLGRAMAVRFGKEKAKVVINYRSDEEEA------NDVAEEIKKAGGEAIAVK 63 (261)
T ss_pred EEEEe-CC-CChHHHHHHHHHHHCCCEEEEEeCCCHHHH------HHHHHHHHHcCCeEEEEE
Confidence 34454 54 468899999999999998877765432110 112333445677766554
No 151
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=44.45 E-value=1.7e+02 Score=25.55 Aligned_cols=66 Identities=18% Similarity=0.126 Sum_probs=41.3
Q ss_pred HHHHHHHHcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEEC
Q 019410 111 FLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 184 (341)
Q Consensus 111 ~ll~~A~~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~ 184 (341)
+.++.+.+.|++.|+..+.+..++...+...++..|++..+.++.... ..........|++.+.+.
T Consensus 68 ~~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~~t--------~~e~~~~~~~~~d~v~~~ 133 (202)
T cd04726 68 LEAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVED--------PEKRAKLLKLGVDIVILH 133 (202)
T ss_pred HHHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCCCC--------HHHHHHHHHCCCCEEEEc
Confidence 345667788888888765432345667788888899988875443221 112333555688876663
No 152
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=44.13 E-value=67 Score=30.84 Aligned_cols=48 Identities=21% Similarity=0.220 Sum_probs=34.0
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEE
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 182 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~ 182 (341)
++|+..|+ |-.|.+++.+|+.+|.+.++ +... ..++.+++.+|++.++
T Consensus 168 ~~VlV~G~--G~vG~~a~~~a~~~G~~vi~-~~~~----------~~~~~~~~~~Ga~~~i 215 (349)
T TIGR03201 168 DLVIVIGA--GGVGGYMVQTAKAMGAAVVA-IDID----------PEKLEMMKGFGADLTL 215 (349)
T ss_pred CEEEEECC--CHHHHHHHHHHHHcCCeEEE-EcCC----------HHHHHHHHHhCCceEe
Confidence 45665664 88999999999999997443 3222 1257788889997544
No 153
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=43.89 E-value=2.3e+02 Score=25.14 Aligned_cols=55 Identities=15% Similarity=0.091 Sum_probs=32.7
Q ss_pred eEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEEC
Q 019410 123 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 184 (341)
Q Consensus 123 ~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~ 184 (341)
+++..|+ +|.-|.++|..-.+.|.++++........ .......++..+.++..+.
T Consensus 4 ~ilItGa-s~giG~~la~~l~~~g~~v~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 58 (248)
T PRK06947 4 VVLITGA-SRGIGRATAVLAAARGWSVGINYARDAAA------AEETADAVRAAGGRACVVA 58 (248)
T ss_pred EEEEeCC-CCcHHHHHHHHHHHCCCEEEEEeCCCHHH------HHHHHHHHHhcCCcEEEEE
Confidence 3443454 47899999999999999876654322110 0112334455677766654
No 154
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=43.79 E-value=81 Score=29.47 Aligned_cols=49 Identities=8% Similarity=-0.006 Sum_probs=34.7
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEE
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 182 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~ 182 (341)
++|+..|+ .|--|.++...|+.+|.+.+.+.+. ..+...++.+|++-++
T Consensus 145 ~~vlI~ga-~g~vG~~aiqlA~~~G~~vi~~~~s-----------~~~~~~l~~~Ga~~vi 193 (329)
T cd08294 145 ETVVVNGA-AGAVGSLVGQIAKIKGCKVIGCAGS-----------DDKVAWLKELGFDAVF 193 (329)
T ss_pred CEEEEecC-ccHHHHHHHHHHHHcCCEEEEEeCC-----------HHHHHHHHHcCCCEEE
Confidence 55655553 4789999999999999986555432 1257788889996544
No 155
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=43.68 E-value=2.4e+02 Score=26.03 Aligned_cols=31 Identities=13% Similarity=0.067 Sum_probs=23.3
Q ss_pred CeEEEeCCC-cchHHHHHHHHHHHcCCeEEEEE
Q 019410 122 DCIITIGGI-QSNHCRAAAVAAKYLNLDCYLIL 153 (341)
Q Consensus 122 ~~vVt~G~s-~GNhg~AlA~aa~~~Gl~~~ivv 153 (341)
..+|| |++ ++.-|.++|....+.|.++++.-
T Consensus 12 ~~lIt-Gas~~~GIG~aia~~la~~G~~V~l~~ 43 (272)
T PRK08159 12 RGLIL-GVANNRSIAWGIAKACRAAGAELAFTY 43 (272)
T ss_pred EEEEE-CCCCCCcHHHHHHHHHHHCCCEEEEEc
Confidence 34555 654 46899999999999999876654
No 156
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=43.48 E-value=69 Score=32.45 Aligned_cols=47 Identities=9% Similarity=0.038 Sum_probs=33.4
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEE
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIE 181 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~ 181 (341)
++|+..|. |.-|+.+|..++.+|.++++ +.... .+....+.+|++++
T Consensus 203 ktVvViG~--G~IG~~va~~ak~~Ga~ViV-~d~d~----------~R~~~A~~~G~~~~ 249 (413)
T cd00401 203 KVAVVAGY--GDVGKGCAQSLRGQGARVIV-TEVDP----------ICALQAAMEGYEVM 249 (413)
T ss_pred CEEEEECC--CHHHHHHHHHHHHCCCEEEE-EECCh----------hhHHHHHhcCCEEc
Confidence 45666665 89999999999999997544 43221 14667788898653
No 157
>PRK02769 histidine decarboxylase; Provisional
Probab=43.16 E-value=2.5e+02 Score=27.82 Aligned_cols=52 Identities=23% Similarity=0.185 Sum_probs=31.7
Q ss_pred eEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEEC
Q 019410 123 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 184 (341)
Q Consensus 123 ~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~ 184 (341)
+++|.|||.+|. .|+. +++.+.-..+|+++.... ....+.++.+|.+++.++
T Consensus 87 G~~TsGgTean~-~a~~-~ar~~~~~~~ii~s~~~H--------~Sv~ka~~~lg~~~~~V~ 138 (380)
T PRK02769 87 GYITNGGTEGNL-YGCY-LARELFPDGTLYYSKDTH--------YSVSKIARLLRIKSRVIT 138 (380)
T ss_pred EEEecChHHHHH-HHHH-HHHHhCCCcEEEeCCCce--------ehHHHHHHHcCCCCceec
Confidence 478889999997 3332 233332345788776542 224666777887766665
No 158
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=43.01 E-value=83 Score=30.37 Aligned_cols=56 Identities=18% Similarity=0.206 Sum_probs=37.6
Q ss_pred eEEEeCCC-cchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEEC
Q 019410 123 CIITIGGI-QSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 184 (341)
Q Consensus 123 ~vVt~G~s-~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~ 184 (341)
+|.-.|-. .+|.+++++.+++++|++++++.|..-.. | ..-+..++..|++|..++
T Consensus 152 ~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~----~--~~~~~~~~~~G~~v~~~~ 208 (301)
T TIGR00670 152 KIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRM----P--KEILEELKAKGIKVRETE 208 (301)
T ss_pred EEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccC----C--HHHHHHHHHcCCEEEEEC
Confidence 44444532 27999999999999999999999876411 1 112345555787776654
No 159
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=42.96 E-value=97 Score=28.11 Aligned_cols=54 Identities=17% Similarity=0.137 Sum_probs=34.6
Q ss_pred CCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEEC
Q 019410 120 GADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 184 (341)
Q Consensus 120 g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~ 184 (341)
|...+|| |+ ++.-|+++|....+.|.+++++-+... ......++..|.++..+.
T Consensus 8 ~k~~lIt-Ga-s~gIG~aia~~l~~~G~~vv~~~~~~~---------~~~~~~~~~~~~~~~~~~ 61 (251)
T PRK12481 8 GKVAIIT-GC-NTGLGQGMAIGLAKAGADIVGVGVAEA---------PETQAQVEALGRKFHFIT 61 (251)
T ss_pred CCEEEEe-CC-CchHHHHHHHHHHHCCCEEEEecCchH---------HHHHHHHHHcCCeEEEEE
Confidence 3334555 54 468999999999999999887644221 112344566787776554
No 160
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=42.61 E-value=2.8e+02 Score=27.30 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=14.7
Q ss_pred HHHHHHHHhcCCCCCCCCEEEEcCCchhH
Q 019410 231 IKEIEQQLQTGTGGVKFDDIVVACGSGGT 259 (341)
Q Consensus 231 a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt 259 (341)
..|+.+++.+ .++| +|+++|+|..
T Consensus 72 v~~~~~~~~~----~~~D-~IIaiGGGs~ 95 (376)
T cd08193 72 VEAAVEAARA----AGAD-GVIGFGGGSS 95 (376)
T ss_pred HHHHHHHHHh----cCCC-EEEEeCCchH
Confidence 3455565543 3566 5677888776
No 161
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=42.52 E-value=82 Score=27.60 Aligned_cols=58 Identities=12% Similarity=0.101 Sum_probs=39.7
Q ss_pred HHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcCCCCCeEEEEeeCCCCccchHhHHHHhh
Q 019410 232 KEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDYTQGLLD 297 (341)
Q Consensus 232 ~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~~~~~rVigVe~~g~~~~~~~~i~~l~~ 297 (341)
.|+.++..+ ..++.|++.+|.-+.+.|+..++- ...||||.+......+...+.++.+
T Consensus 43 ~~~~~~a~~----~g~~viIa~AG~aa~Lpgvva~~t----~~PVIgvP~~~~~l~G~daLlS~vq 100 (156)
T TIGR01162 43 LEYAKEAEE----RGIKVIIAGAGGAAHLPGMVAALT----PLPVIGVPVPSKALSGLDSLLSIVQ 100 (156)
T ss_pred HHHHHHHHH----CCCeEEEEeCCccchhHHHHHhcc----CCCEEEecCCccCCCCHHHHHHHhc
Confidence 455555542 247889999998888999988764 4689999987654444454444543
No 162
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=42.25 E-value=2.8e+02 Score=25.57 Aligned_cols=32 Identities=9% Similarity=0.007 Sum_probs=23.8
Q ss_pred CeEEEeCCCc-chHHHHHHHHHHHcCCeEEEEEc
Q 019410 122 DCIITIGGIQ-SNHCRAAAVAAKYLNLDCYLILR 154 (341)
Q Consensus 122 ~~vVt~G~s~-GNhg~AlA~aa~~~Gl~~~ivvp 154 (341)
..||| |+++ +.-|+++|....+.|.+++++-+
T Consensus 9 ~~lVT-Gas~~~GIG~aiA~~la~~Ga~V~~~~r 41 (271)
T PRK06505 9 RGLIM-GVANDHSIAWGIAKQLAAQGAELAFTYQ 41 (271)
T ss_pred EEEEe-CCCCCCcHHHHHHHHHHhCCCEEEEecC
Confidence 34555 6554 47899999999999998877643
No 163
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=41.89 E-value=2.7e+02 Score=25.33 Aligned_cols=32 Identities=6% Similarity=0.027 Sum_probs=23.8
Q ss_pred CeEEEeCCC-cchHHHHHHHHHHHcCCeEEEEEc
Q 019410 122 DCIITIGGI-QSNHCRAAAVAAKYLNLDCYLILR 154 (341)
Q Consensus 122 ~~vVt~G~s-~GNhg~AlA~aa~~~Gl~~~ivvp 154 (341)
..||| |++ ++.-|.++|..-.+.|.++++.-+
T Consensus 9 ~~lIt-Ga~~s~GIG~aia~~la~~G~~v~~~~r 41 (257)
T PRK08594 9 TYVVM-GVANKRSIAWGIARSLHNAGAKLVFTYA 41 (257)
T ss_pred EEEEE-CCCCCCCHHHHHHHHHHHCCCEEEEecC
Confidence 34555 655 378999999999999998776643
No 164
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=41.88 E-value=2.6e+02 Score=25.02 Aligned_cols=166 Identities=13% Similarity=0.069 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHHHcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCc--------CCCCCcchh---HHHHH
Q 019410 106 VRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLV--------DQDPGLIGN---LLVER 174 (341)
Q Consensus 106 ~Rkl~~ll~~A~~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~--------~~~~~~~gn---~~~~~ 174 (341)
..+...++..+..++.+.|+..+. ..+........++..|++++++-....... ..+....+. ..+++
T Consensus 42 ~~~~~~~~~~l~~~~vdgiii~~~-~~~~~~~~l~~~~~~~iPvV~~~~~~~~~~~~~v~~~v~~d~~~~g~~~~~~l~~ 120 (275)
T cd06317 42 VARQAAQVEDLIAQKVDGIILWPT-DGQAYIPGLRKAKQAGIPVVITNSNISEKGFEFIKSFTGPDDISQGERSAEAMCK 120 (275)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecC-CccccHHHHHHHHHCCCcEEEeCCCCCCCccchhhhhccccHHHHHHHHHHHHHH
Confidence 344445566677788998876542 223223444556789999987743211000 000000111 11223
Q ss_pred hC-CC-EEEEEC-CccccccCcHHHHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEE
Q 019410 175 LV-GA-HIELIS-KEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIV 251 (341)
Q Consensus 175 ~~-GA-eV~~v~-~~~~~~~~~~~~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Iv 251 (341)
.+ |. +|..+. ...+. ....+.+...+.+++.+....++.....+.....++ ....+++++- ..++|+||
T Consensus 121 ~~~g~~~i~~l~~~~~~~--~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~-----~~~~~ai~ 192 (275)
T cd06317 121 ALGGKGQIVVIAGQPGNG--TAIERQKGFEDELAEVCPGVEVLDTQPADWDREKAQ-VAMEALITKF-----GDDIDGVY 192 (275)
T ss_pred HcCCCceEEEEecCCCCc--hHHHHHHHHHHHHHhhCCCCEEEeccCCCCCHHHHH-HHHHHHHHhC-----CCCccEEE
Confidence 32 53 565553 22221 111222333344444432222221110111111233 2334554431 02588888
Q ss_pred EcCCchhHHHHHHHHHhcCCC--CCeEEEEeeC
Q 019410 252 VACGSGGTIAGLSLGSWLGTL--KAKVHAFSVC 282 (341)
Q Consensus 252 v~vGtGGt~aGl~~~~k~~~~--~~rVigVe~~ 282 (341)
+ .+...+.|+..++++.+. ++.|+|++..
T Consensus 193 ~--~~d~~a~g~~~~l~~~g~~~dv~v~g~d~~ 223 (275)
T cd06317 193 A--GDDNMARGALNAAKEAGLAGGIVIVGANNF 223 (275)
T ss_pred E--CCCcHHHHHHHHHHhcCCcCCcEEEEeCCC
Confidence 5 445567899999998775 7888886654
No 165
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=41.87 E-value=2.4e+02 Score=24.72 Aligned_cols=32 Identities=13% Similarity=0.072 Sum_probs=23.4
Q ss_pred eEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcC
Q 019410 123 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 155 (341)
Q Consensus 123 ~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~ 155 (341)
+++..|+ +|.-|.+++....+.|.+.+++.+.
T Consensus 7 ~vlItG~-sg~iG~~l~~~l~~~G~~v~~~~~~ 38 (248)
T PRK05557 7 VALVTGA-SRGIGRAIAERLAAQGANVVINYAS 38 (248)
T ss_pred EEEEECC-CchHHHHHHHHHHHCCCEEEEEeCC
Confidence 3443454 4789999999988899987666653
No 166
>PRK06139 short chain dehydrogenase; Provisional
Probab=41.66 E-value=1.5e+02 Score=28.64 Aligned_cols=54 Identities=20% Similarity=0.173 Sum_probs=34.8
Q ss_pred eEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEEC
Q 019410 123 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 184 (341)
Q Consensus 123 ~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~ 184 (341)
+++..|+ +|--|+++|......|.+++++.++.... ..-...++..|+++..+.
T Consensus 9 ~vlITGA-s~GIG~aia~~la~~G~~Vvl~~R~~~~l-------~~~~~~~~~~g~~~~~~~ 62 (330)
T PRK06139 9 VVVITGA-SSGIGQATAEAFARRGARLVLAARDEEAL-------QAVAEECRALGAEVLVVP 62 (330)
T ss_pred EEEEcCC-CCHHHHHHHHHHHHCCCEEEEEECCHHHH-------HHHHHHHHhcCCcEEEEE
Confidence 4443454 47899999999999999977776543210 112345566788876654
No 167
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=41.51 E-value=94 Score=32.38 Aligned_cols=50 Identities=20% Similarity=0.028 Sum_probs=36.5
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEEC
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 184 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~ 184 (341)
++|+..|+ |.-|.+.+..|+.+|-+ +++++.. ..+++..+.+||+.+.++
T Consensus 166 ~kVlViGa--G~iGL~Ai~~Ak~lGA~-V~a~D~~----------~~rle~aeslGA~~v~i~ 215 (509)
T PRK09424 166 AKVLVIGA--GVAGLAAIGAAGSLGAI-VRAFDTR----------PEVAEQVESMGAEFLELD 215 (509)
T ss_pred CEEEEECC--cHHHHHHHHHHHHCCCE-EEEEeCC----------HHHHHHHHHcCCeEEEec
Confidence 45665675 89999999999999985 4444332 235888999999966553
No 168
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=41.36 E-value=3e+02 Score=26.69 Aligned_cols=149 Identities=19% Similarity=0.170 Sum_probs=77.4
Q ss_pred HcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCc--CCCC-------C--c--chhH-HHHHhCCC-EEEE
Q 019410 118 AQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLV--DQDP-------G--L--IGNL-LVERLVGA-HIEL 182 (341)
Q Consensus 118 ~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~--~~~~-------~--~--~gn~-~~~~~~GA-eV~~ 182 (341)
.++...|| |...|....+++-.+.+.++..+.......... ..++ . . ..-. .+.+..|. .|.+
T Consensus 76 ~~~V~~vv--G~~~S~~~~a~~~v~~~~~i~~i~p~st~~~~~~~~~~~~vfr~~~~~~~q~~~~~~~l~~~~~~k~v~i 153 (366)
T COG0683 76 QDGVDAVV--GPTTSGVALAASPVAEEAGVPLISPSATAPQLTGRGLKPNVFRTGPTDNQQAAAAADYLVKKGGKKRVAI 153 (366)
T ss_pred hcCceEEE--EeccCcccccchhhHhhcCceEEeecCCCCcccccccccceEEecCChHHHHHHHHHHHHHhcCCcEEEE
Confidence 45666666 344456667777778888876554421111000 0000 0 0 0011 23345677 6777
Q ss_pred ECCc-cccccCcHHHHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHH
Q 019410 183 ISKE-EYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIA 261 (341)
Q Consensus 183 v~~~-~~~~~~~~~~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~a 261 (341)
+..+ .|.. ...+...+.+++.|.. ..... ..++.... +.++..+|... .+|+ |+-.|.+....
T Consensus 154 i~~~~~yg~----~~~~~~~~~l~~~G~~-~~~~~-~~~~~~~~-~~~~v~~i~~~--------~~d~-v~~~~~~~~~~ 217 (366)
T COG0683 154 IGDDYAYGE----GLADAFKAALKALGGE-VVVEE-VYAPGDTD-FSALVAKIKAA--------GPDA-VLVGGYGPDAA 217 (366)
T ss_pred EeCCCCcch----hHHHHHHHHHHhCCCe-EEEEE-eeCCCCCC-hHHHHHHHHhc--------CCCE-EEECCCCccch
Confidence 6542 3422 2334455556665533 21100 01111111 44555555432 5784 55577778888
Q ss_pred HHHHHHhcCCCCCeEEEEeeCCC
Q 019410 262 GLSLGSWLGTLKAKVHAFSVCDD 284 (341)
Q Consensus 262 Gl~~~~k~~~~~~rVigVe~~g~ 284 (341)
.+.+..++.+.+.++++....+.
T Consensus 218 ~~~r~~~~~G~~~~~~~~~~~~~ 240 (366)
T COG0683 218 LFLRQAREQGLKAKLIGGDGAGT 240 (366)
T ss_pred HHHHHHHHcCCCCccccccccCc
Confidence 89999999888888887776554
No 169
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=41.06 E-value=99 Score=29.29 Aligned_cols=48 Identities=23% Similarity=0.196 Sum_probs=34.4
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEE
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 182 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~ 182 (341)
++|+..| .|.-|.+++..|+.+|.+.+++.+.. .++..++.+|++-++
T Consensus 165 ~~vlV~g--~g~iG~~~~~~a~~~G~~vi~~~~~~-----------~~~~~~~~~g~~~~i 212 (333)
T cd08296 165 DLVAVQG--IGGLGHLAVQYAAKMGFRTVAISRGS-----------DKADLARKLGAHHYI 212 (333)
T ss_pred CEEEEEC--CcHHHHHHHHHHHHCCCeEEEEeCCh-----------HHHHHHHHcCCcEEe
Confidence 5666666 38999999999999999855543321 247777889986443
No 170
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=40.91 E-value=71 Score=30.38 Aligned_cols=49 Identities=6% Similarity=-0.043 Sum_probs=34.2
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHh-CCCEEEE
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERL-VGAHIEL 182 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~-~GAeV~~ 182 (341)
++|+..|+ +|.-|.+++..|+.+|.+.+++.+.. .+...++. +|++-++
T Consensus 153 ~~VlI~Ga-~G~vG~~aiqlAk~~G~~Vi~~~~~~-----------~~~~~~~~~lGa~~vi 202 (338)
T cd08295 153 ETVFVSAA-SGAVGQLVGQLAKLKGCYVVGSAGSD-----------EKVDLLKNKLGFDDAF 202 (338)
T ss_pred CEEEEecC-ccHHHHHHHHHHHHcCCEEEEEeCCH-----------HHHHHHHHhcCCceeE
Confidence 45555554 47899999999999999865554321 25677777 9986443
No 171
>PRK06139 short chain dehydrogenase; Provisional
Probab=40.91 E-value=3.4e+02 Score=26.13 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=21.6
Q ss_pred HHHHHHHHcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEE
Q 019410 111 FLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLI 152 (341)
Q Consensus 111 ~ll~~A~~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~iv 152 (341)
.+.....++|.+.+++ + -.......++..++..|.++.++
T Consensus 22 aia~~la~~G~~Vvl~-~-R~~~~l~~~~~~~~~~g~~~~~~ 61 (330)
T PRK06139 22 ATAEAFARRGARLVLA-A-RDEEALQAVAEECRALGAEVLVV 61 (330)
T ss_pred HHHHHHHHCCCEEEEE-E-CCHHHHHHHHHHHHhcCCcEEEE
Confidence 3444455678764443 2 22334455555666677776544
No 172
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=40.80 E-value=1.1e+02 Score=28.80 Aligned_cols=52 Identities=19% Similarity=0.195 Sum_probs=34.5
Q ss_pred CCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEE
Q 019410 120 GADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELI 183 (341)
Q Consensus 120 g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v 183 (341)
+.+.+|..++ .|--|.+++..|+.+|.+.+++.+.. .+...++.+|++.++.
T Consensus 143 ~~~vlv~~~g-~g~vG~~a~q~a~~~G~~vi~~~~~~-----------~~~~~~~~~g~~~~i~ 194 (324)
T cd08291 143 GAKAVVHTAA-ASALGRMLVRLCKADGIKVINIVRRK-----------EQVDLLKKIGAEYVLN 194 (324)
T ss_pred CCcEEEEccC-ccHHHHHHHHHHHHcCCEEEEEeCCH-----------HHHHHHHHcCCcEEEE
Confidence 4444553233 37899999999999999855543321 2577778899976544
No 173
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=40.64 E-value=48 Score=29.21 Aligned_cols=27 Identities=22% Similarity=0.192 Sum_probs=22.5
Q ss_pred eCCCcchHHHHHHHHHHHcCCeEEEEEcC
Q 019410 127 IGGIQSNHCRAAAVAAKYLNLDCYLILRT 155 (341)
Q Consensus 127 ~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~ 155 (341)
.|+ |..|+++|+.++..|++++++=++
T Consensus 5 iGa--G~mG~~iA~~~a~~G~~V~l~d~~ 31 (180)
T PF02737_consen 5 IGA--GTMGRGIAALFARAGYEVTLYDRS 31 (180)
T ss_dssp ES---SHHHHHHHHHHHHTTSEEEEE-SS
T ss_pred EcC--CHHHHHHHHHHHhCCCcEEEEECC
Confidence 465 899999999999999999999654
No 174
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=40.49 E-value=39 Score=34.82 Aligned_cols=36 Identities=28% Similarity=0.230 Sum_probs=30.8
Q ss_pred cCCCeEEEeCC--------------CcchHHHHHHHHHHHcCCeEEEEEc
Q 019410 119 QGADCIITIGG--------------IQSNHCRAAAVAAKYLNLDCYLILR 154 (341)
Q Consensus 119 ~g~~~vVt~G~--------------s~GNhg~AlA~aa~~~Gl~~~ivvp 154 (341)
.|.+.+||.|+ |+|-+|.++|.++..+|-++++|.-
T Consensus 255 ~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~G 304 (475)
T PRK13982 255 AGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISG 304 (475)
T ss_pred CCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeC
Confidence 45567788875 6899999999999999999999973
No 175
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=40.41 E-value=3.6e+02 Score=27.73 Aligned_cols=23 Identities=9% Similarity=-0.042 Sum_probs=20.6
Q ss_pred chHHHHHHHHHHHcCCeEEEEEc
Q 019410 132 SNHCRAAAVAAKYLNLDCYLILR 154 (341)
Q Consensus 132 GNhg~AlA~aa~~~Gl~~~ivvp 154 (341)
|+.|.++|..-...|++++++=+
T Consensus 10 G~MG~~lA~nL~~~G~~V~v~dr 32 (470)
T PTZ00142 10 AVMGQNLALNIASRGFKISVYNR 32 (470)
T ss_pred hHHHHHHHHHHHHCCCeEEEEeC
Confidence 79999999999999999888854
No 176
>PRK05867 short chain dehydrogenase; Provisional
Probab=40.35 E-value=2.2e+02 Score=25.63 Aligned_cols=32 Identities=19% Similarity=0.195 Sum_probs=23.1
Q ss_pred CCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEc
Q 019410 121 ADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 154 (341)
Q Consensus 121 ~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp 154 (341)
...+|| |+ +|.-|.++|..-.+.|.+++++-+
T Consensus 10 k~vlVt-Ga-s~gIG~~ia~~l~~~G~~V~~~~r 41 (253)
T PRK05867 10 KRALIT-GA-STGIGKRVALAYVEAGAQVAIAAR 41 (253)
T ss_pred CEEEEE-CC-CchHHHHHHHHHHHCCCEEEEEcC
Confidence 334555 54 468899999999999998776644
No 177
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=40.33 E-value=3.3e+02 Score=28.84 Aligned_cols=50 Identities=8% Similarity=-0.006 Sum_probs=35.5
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEEC
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 184 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~ 184 (341)
+++|-+|. |..|+.+|..-...|++++++= .+. .+++.++.+|..++.-+
T Consensus 401 ~~vII~G~--Gr~G~~va~~L~~~g~~vvvID-~d~----------~~v~~~~~~g~~v~~GD 450 (601)
T PRK03659 401 PQVIIVGF--GRFGQVIGRLLMANKMRITVLE-RDI----------SAVNLMRKYGYKVYYGD 450 (601)
T ss_pred CCEEEecC--chHHHHHHHHHHhCCCCEEEEE-CCH----------HHHHHHHhCCCeEEEee
Confidence 45666664 8999999999999999876663 221 24677778887776654
No 178
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=40.22 E-value=2.8e+02 Score=25.05 Aligned_cols=31 Identities=13% Similarity=0.173 Sum_probs=22.7
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEc
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 154 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp 154 (341)
..+|| |+ ++.-|+++|....+.|.+++++.+
T Consensus 10 ~vlIt-Ga-s~gIG~~ia~~l~~~G~~v~~~~~ 40 (260)
T PRK08416 10 TLVIS-GG-TRGIGKAIVYEFAQSGVNIAFTYN 40 (260)
T ss_pred EEEEe-CC-CchHHHHHHHHHHHCCCEEEEEcC
Confidence 34454 54 468899999999999998776644
No 179
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=40.04 E-value=3e+02 Score=27.08 Aligned_cols=24 Identities=17% Similarity=0.248 Sum_probs=14.4
Q ss_pred HHHHHHHHhcCCCCCCCCEEEEcCCchhH
Q 019410 231 IKEIEQQLQTGTGGVKFDDIVVACGSGGT 259 (341)
Q Consensus 231 a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt 259 (341)
..|+.+++.+ .++| +|+++|+|..
T Consensus 72 v~~~~~~~~~----~~~d-~IIaiGGGS~ 95 (374)
T cd08189 72 VEAGLALYRE----NGCD-AILAVGGGSV 95 (374)
T ss_pred HHHHHHHHHh----cCCC-EEEEeCCccH
Confidence 4555565553 3466 4667888765
No 180
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=40.01 E-value=2.9e+02 Score=25.09 Aligned_cols=32 Identities=13% Similarity=0.071 Sum_probs=23.8
Q ss_pred CeEEEeCCCc-chHHHHHHHHHHHcCCeEEEEEc
Q 019410 122 DCIITIGGIQ-SNHCRAAAVAAKYLNLDCYLILR 154 (341)
Q Consensus 122 ~~vVt~G~s~-GNhg~AlA~aa~~~Gl~~~ivvp 154 (341)
..||| |+++ +.-|.++|....+.|.+++++-+
T Consensus 12 ~~lIt-Gas~g~GIG~a~a~~la~~G~~v~l~~r 44 (258)
T PRK07533 12 RGLVV-GIANEQSIAWGCARAFRALGAELAVTYL 44 (258)
T ss_pred EEEEE-CCCCCCcHHHHHHHHHHHcCCEEEEEeC
Confidence 34555 6665 47999999999999998777654
No 181
>PRK06202 hypothetical protein; Provisional
Probab=39.96 E-value=36 Score=30.88 Aligned_cols=38 Identities=18% Similarity=0.237 Sum_probs=28.2
Q ss_pred CCEEEEcCCchhHHHHHHHHHhcCCCCCeEEEEeeCCC
Q 019410 247 FDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDD 284 (341)
Q Consensus 247 ~D~Ivv~vGtGGt~aGl~~~~k~~~~~~rVigVe~~g~ 284 (341)
...+=++||+|....-++...+..++..+|+||+....
T Consensus 62 ~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~ 99 (232)
T PRK06202 62 LTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPR 99 (232)
T ss_pred cEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHH
Confidence 34677888888877666666666677889999998754
No 182
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=39.81 E-value=82 Score=29.86 Aligned_cols=49 Identities=18% Similarity=0.252 Sum_probs=33.1
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEE
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 182 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~ 182 (341)
++|+..|+ |--|.+++..|+.+|.+-++++... ..+...++.+|++.++
T Consensus 165 ~~vlV~G~--G~vG~~~~~~ak~~G~~~vi~~~~~----------~~~~~~~~~~ga~~~i 213 (339)
T cd08239 165 DTVLVVGA--GPVGLGALMLARALGAEDVIGVDPS----------PERLELAKALGADFVI 213 (339)
T ss_pred CEEEEECC--CHHHHHHHHHHHHcCCCEEEEECCC----------HHHHHHHHHhCCCEEE
Confidence 44444453 7899999999999999934444322 1256777889996544
No 183
>PRK08862 short chain dehydrogenase; Provisional
Probab=39.67 E-value=2.6e+02 Score=25.05 Aligned_cols=54 Identities=11% Similarity=-0.034 Sum_probs=32.9
Q ss_pred eEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEEC
Q 019410 123 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 184 (341)
Q Consensus 123 ~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~ 184 (341)
+++..|++ +.-|+++|...++.|.+++++-++... .....+.++..|.+++.+.
T Consensus 7 ~~lVtGas-~GIG~aia~~la~~G~~V~~~~r~~~~-------l~~~~~~i~~~~~~~~~~~ 60 (227)
T PRK08862 7 IILITSAG-SVLGRTISCHFARLGATLILCDQDQSA-------LKDTYEQCSALTDNVYSFQ 60 (227)
T ss_pred EEEEECCc-cHHHHHHHHHHHHCCCEEEEEcCCHHH-------HHHHHHHHHhcCCCeEEEE
Confidence 34434544 588999999999999987776443211 0112344556677765543
No 184
>PRK12831 putative oxidoreductase; Provisional
Probab=39.61 E-value=1.1e+02 Score=31.04 Aligned_cols=57 Identities=21% Similarity=0.314 Sum_probs=37.6
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEE
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELI 183 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v 183 (341)
+.|+..|| ||.|.-+|..+.++|.+++++.+...... +.....+..++..|.++++-
T Consensus 282 k~VvVIGg--G~va~d~A~~l~r~Ga~Vtlv~r~~~~~m---~a~~~e~~~a~~eGV~i~~~ 338 (464)
T PRK12831 282 KKVAVVGG--GNVAMDAARTALRLGAEVHIVYRRSEEEL---PARVEEVHHAKEEGVIFDLL 338 (464)
T ss_pred CeEEEECC--cHHHHHHHHHHHHcCCEEEEEeecCcccC---CCCHHHHHHHHHcCCEEEec
Confidence 45666776 89999999999999999888876442111 11112234456678776643
No 185
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=39.50 E-value=3.4e+02 Score=28.93 Aligned_cols=51 Identities=8% Similarity=-0.011 Sum_probs=37.7
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECC
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISK 185 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~ 185 (341)
++|+-+|. |..|+.+|..-...|++++++ +.+ ..+++.++.+|.+|+.-+.
T Consensus 401 ~~vII~G~--Gr~G~~va~~L~~~g~~vvvI-D~d----------~~~v~~~~~~g~~v~~GDa 451 (621)
T PRK03562 401 PRVIIAGF--GRFGQIVGRLLLSSGVKMTVL-DHD----------PDHIETLRKFGMKVFYGDA 451 (621)
T ss_pred CcEEEEec--ChHHHHHHHHHHhCCCCEEEE-ECC----------HHHHHHHHhcCCeEEEEeC
Confidence 55666665 899999999999999988776 322 1257778889988766543
No 186
>PRK06182 short chain dehydrogenase; Validated
Probab=39.10 E-value=3e+02 Score=25.03 Aligned_cols=50 Identities=16% Similarity=0.107 Sum_probs=32.2
Q ss_pred eEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEEC
Q 019410 123 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 184 (341)
Q Consensus 123 ~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~ 184 (341)
+++..|+ +|--|.++|......|.+++++.+... ++..+...+.+++.++
T Consensus 5 ~vlItGa-sggiG~~la~~l~~~G~~V~~~~r~~~-----------~l~~~~~~~~~~~~~D 54 (273)
T PRK06182 5 VALVTGA-SSGIGKATARRLAAQGYTVYGAARRVD-----------KMEDLASLGVHPLSLD 54 (273)
T ss_pred EEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHH-----------HHHHHHhCCCeEEEee
Confidence 3443454 468999999999999999887765321 2333444566665554
No 187
>PRK07774 short chain dehydrogenase; Provisional
Probab=38.79 E-value=2.8e+02 Score=24.60 Aligned_cols=32 Identities=19% Similarity=0.032 Sum_probs=23.7
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcC
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 155 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~ 155 (341)
+.+|| |+ +|--|.++|......|.+++++.+.
T Consensus 8 ~vlIt-Ga-sg~iG~~la~~l~~~g~~vi~~~r~ 39 (250)
T PRK07774 8 VAIVT-GA-AGGIGQAYAEALAREGASVVVADIN 39 (250)
T ss_pred EEEEE-CC-CchHHHHHHHHHHHCCCEEEEEeCC
Confidence 34454 54 4789999999999999987777553
No 188
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=38.78 E-value=3e+02 Score=24.88 Aligned_cols=32 Identities=13% Similarity=0.098 Sum_probs=24.1
Q ss_pred CCeEEEeCCCc-chHHHHHHHHHHHcCCeEEEEE
Q 019410 121 ADCIITIGGIQ-SNHCRAAAVAAKYLNLDCYLIL 153 (341)
Q Consensus 121 ~~~vVt~G~s~-GNhg~AlA~aa~~~Gl~~~ivv 153 (341)
...+|| |++. +.-|.++|......|.++++..
T Consensus 7 k~vlVt-Gas~~~giG~~~a~~l~~~G~~vi~~~ 39 (256)
T PRK12859 7 KVAVVT-GVSRLDGIGAAICKELAEAGADIFFTY 39 (256)
T ss_pred cEEEEE-CCCCCCChHHHHHHHHHHCCCeEEEEe
Confidence 344554 6663 6899999999999999877753
No 189
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=38.60 E-value=1.7e+02 Score=28.90 Aligned_cols=57 Identities=14% Similarity=0.163 Sum_probs=36.2
Q ss_pred CeEEEeCCCcchHHHHHHHHHH------HcC----CeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCc
Q 019410 122 DCIITIGGIQSNHCRAAAVAAK------YLN----LDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKE 186 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~------~~G----l~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~ 186 (341)
.+++|.|||.+|.-.-+|+--+ ..| -+.++|+++.... .-.+.++.+|-.++.++-+
T Consensus 105 ~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH~--------S~~Kaa~~lGlg~~~I~~~ 171 (373)
T PF00282_consen 105 GGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQAHY--------SIEKAARILGLGVRKIPTD 171 (373)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS-T--------HHHHHHHHTTSEEEEE-BB
T ss_pred ceeEeccchHHHHHHHHHHHHHHhhhhhhccccccccccccccccccc--------HHHHhcceeeeEEEEecCC
Confidence 4788999888886544433222 224 3578888876531 2366788889888888743
No 190
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=38.59 E-value=2.9e+02 Score=24.71 Aligned_cols=162 Identities=15% Similarity=0.103 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCC------CcCCCCCcchh---HHHHHhC-C
Q 019410 108 KLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKV------LVDQDPGLIGN---LLVERLV-G 177 (341)
Q Consensus 108 kl~~ll~~A~~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~------~~~~~~~~~gn---~~~~~~~-G 177 (341)
.....+..+...+.+.+|..+. ..+....+...+...|++++.+-..... ....+....+. ..+.+.. |
T Consensus 44 ~~~~~i~~l~~~~vdgiii~~~-~~~~~~~~~~~l~~~~iPvv~~~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~~~~ 122 (272)
T cd06301 44 TQLSQVENFIAQGVDAIIVVPV-DTAATAPIVKAANAAGIPLVYVNRRPENAPKGVAYVGSDEVVAGRLQAEYVADKLGG 122 (272)
T ss_pred HHHHHHHHHHHcCCCEEEEecC-chhhhHHHHHHHHHCCCeEEEecCCCCCCCCeeEEEecChHHHHHHHHHHHHHHhCC
Confidence 3334566677788999986543 2333345555678899998877542111 01101001111 1223332 3
Q ss_pred -CEEEEECCccccccCcHHHHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCc
Q 019410 178 -AHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGS 256 (341)
Q Consensus 178 -AeV~~v~~~~~~~~~~~~~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGt 256 (341)
.+|.++....... ....+.+...+.+++.+ ..-+......+.....++ ....+++++. .++|+||+ .+
T Consensus 123 ~~~i~~i~~~~~~~-~~~~R~~gf~~~l~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~l~~~------~~~~ai~~--~~ 191 (272)
T cd06301 123 KGNVAILMGPLGQS-AQIDRTKGVEEVLAKYP-DIKVVEEQTANWSRAEAM-DLMENWLSSG------GKIDAVVA--NN 191 (272)
T ss_pred CccEEEEECCCCCc-cHHHHHHHHHHHHHHCC-CcEEEecCCCCccHHHHH-HHHHHHHHhC------CCCCEEEE--CC
Confidence 4776664321111 11122233344444433 222222111111111233 2334444331 35888876 33
Q ss_pred hhHHHHHHHHHhcCCC---CCeEEEEee
Q 019410 257 GGTIAGLSLGSWLGTL---KAKVHAFSV 281 (341)
Q Consensus 257 GGt~aGl~~~~k~~~~---~~rVigVe~ 281 (341)
...+.|+..++++.+. ++.|+|++-
T Consensus 192 d~~a~~~~~~l~~~g~~~~di~ivg~d~ 219 (272)
T cd06301 192 DEMALGAIMALKAAGKSDKDVPVAGIDG 219 (272)
T ss_pred CchHHHHHHHHHHcCCCCCCcEEEeeCC
Confidence 3556688888887664 567777643
No 191
>PRK07806 short chain dehydrogenase; Provisional
Probab=38.56 E-value=2.8e+02 Score=24.58 Aligned_cols=32 Identities=13% Similarity=0.076 Sum_probs=23.9
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcC
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 155 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~ 155 (341)
..+|| |+ +|.-|.+++......|.+++++.+.
T Consensus 8 ~vlIt-Ga-sggiG~~l~~~l~~~G~~V~~~~r~ 39 (248)
T PRK07806 8 TALVT-GS-SRGIGADTAKILAGAGAHVVVNYRQ 39 (248)
T ss_pred EEEEE-CC-CCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 34454 54 4689999999999999998777654
No 192
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=38.30 E-value=2.9e+02 Score=24.54 Aligned_cols=56 Identities=16% Similarity=0.062 Sum_probs=32.7
Q ss_pred eEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECC
Q 019410 123 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISK 185 (341)
Q Consensus 123 ~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~ 185 (341)
+++..|+ +|--|.++|......|.+++++....... ...-...++..|.++..+.-
T Consensus 8 ~~lItG~-s~~iG~~la~~l~~~g~~v~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~ 63 (247)
T PRK12935 8 VAIVTGG-AKGIGKAITVALAQEGAKVVINYNSSKEA------AENLVNELGKEGHDVYAVQA 63 (247)
T ss_pred EEEEECC-CCHHHHHHHHHHHHcCCEEEEEcCCcHHH------HHHHHHHHHhcCCeEEEEEC
Confidence 3443454 47899999998889999876544322110 01112344556777766653
No 193
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=38.28 E-value=1.2e+02 Score=26.29 Aligned_cols=58 Identities=12% Similarity=0.011 Sum_probs=30.0
Q ss_pred CeEEEeCCCcchHHHHHH--HHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEE
Q 019410 122 DCIITIGGIQSNHCRAAA--VAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 182 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA--~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~ 182 (341)
..+|.+| ..-|-|-+++ ..-+..|+++++++-..... .++....+++.++.+|.+++.
T Consensus 27 ~v~il~G-~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~ 86 (169)
T PF03853_consen 27 RVLILCG-PGNNGGDGLVAARHLANRGYNVTVYLVGPPEK--LSEDAKQQLEILKKMGIKIIE 86 (169)
T ss_dssp EEEEEE--SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSS--TSHHHHHHHHHHHHTT-EEES
T ss_pred eEEEEEC-CCCChHHHHHHHHHHHHCCCeEEEEEEecccc--CCHHHHHHHHHHHhcCCcEee
Confidence 4455555 4345445544 44455999998855432211 111234467777777766544
No 194
>PRK08227 autoinducer 2 aldolase; Validated
Probab=38.22 E-value=1e+02 Score=29.23 Aligned_cols=77 Identities=17% Similarity=0.086 Sum_probs=47.0
Q ss_pred HHHHHHHHHHcCCCeEEE---eCCCcchH----HHHHHHHHHHcCCeEEEEEcCCCCCcCCCCC-cchhHHHHHhCCCEE
Q 019410 109 LEFLMADAVAQGADCIIT---IGGIQSNH----CRAAAVAAKYLNLDCYLILRTSKVLVDQDPG-LIGNLLVERLVGAHI 180 (341)
Q Consensus 109 l~~ll~~A~~~g~~~vVt---~G~s~GNh----g~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~-~~gn~~~~~~~GAeV 180 (341)
+..-+++|.+.|++.|.. .|+..-+. ...++..|.++|++.+++.|......++ +. ...-.+....+||++
T Consensus 96 l~~sVeeAvrlGAdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~Plla~~prG~~~~~~-~~~ia~aaRiaaELGADi 174 (264)
T PRK08227 96 VAVDMEDAVRLNACAVAAQVFIGSEYEHQSIKNIIQLVDAGLRYGMPVMAVTAVGKDMVRD-ARYFSLATRIAAEMGAQI 174 (264)
T ss_pred ceecHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEecCCCCcCch-HHHHHHHHHHHHHHcCCE
Confidence 334488899999987752 35322122 2356678999999999877654321111 11 111244556689999
Q ss_pred EEECCc
Q 019410 181 ELISKE 186 (341)
Q Consensus 181 ~~v~~~ 186 (341)
+.+...
T Consensus 175 VK~~y~ 180 (264)
T PRK08227 175 IKTYYV 180 (264)
T ss_pred EecCCC
Confidence 998753
No 195
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=38.12 E-value=53 Score=32.15 Aligned_cols=100 Identities=18% Similarity=0.188 Sum_probs=51.4
Q ss_pred HHHHHhCCCEEEEECCccccccCcHHHHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCE
Q 019410 170 LLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDD 249 (341)
Q Consensus 170 ~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~ 249 (341)
-..++.+| ++.+|.+..+.. ...++++.+.|++.+-...++..-..+|.. ....|+.+++.. ..+|
T Consensus 15 ~~~l~~~g-r~lvVt~~~~~~---~~~~~~v~~~L~~~~i~~~~~~~~~~~p~~-----~~v~~~~~~~~~----~~~D- 80 (366)
T PF00465_consen 15 GEELKRLG-RVLVVTDPSLSK---SGLVDRVLDALEEAGIEVQVFDGVGPNPTL-----EDVDEAAEQARK----FGAD- 80 (366)
T ss_dssp HHHHHCTT-EEEEEEEHHHHH---HTHHHHHHHHHHHTTCEEEEEEEESSS-BH-----HHHHHHHHHHHH----TTSS-
T ss_pred HHHHHhcC-CEEEEECchHHh---CccHHHHHHHHhhCceEEEEEecCCCCCcH-----HHHHHHHHHHHh----cCCC-
Confidence 34567778 887776433322 123456666676654332222211223332 234566666654 3577
Q ss_pred EEEcCCchhHHHHHHHHHhc--C----------------CCCCeEEEEeeCCC
Q 019410 250 IVVACGSGGTIAGLSLGSWL--G----------------TLKAKVHAFSVCDD 284 (341)
Q Consensus 250 Ivv~vGtGGt~aGl~~~~k~--~----------------~~~~rVigVe~~g~ 284 (341)
.|+++|+|+.+ -++++... . .+..++|+|....+
T Consensus 81 ~IIaiGGGS~~-D~aK~va~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt~g 132 (366)
T PF00465_consen 81 CIIAIGGGSVM-DAAKAVALLLANPGDLRDLLGKGPPPTKPALPLIAIPTTAG 132 (366)
T ss_dssp EEEEEESHHHH-HHHHHHHHHHTSSSCGGGGGCECSCCSS--SEEEEEESSSS
T ss_pred EEEEcCCCCcC-cHHHHHHhhccCCCcHHHHHhhccccccCCCcEEEeeCCcc
Confidence 46678887653 34444432 1 12378999986543
No 196
>PF04198 Sugar-bind: Putative sugar-binding domain; InterPro: IPR007324 This probable domain is found in bacterial transcriptional regulators such as DeoR and SorC. One of these proteins, Q8U7I7 from SWISSPROT, has an N-terminal helix-turn-helix IPR000792 from INTERPRO that binds to DNA. This domain is probably the ligand regulator binding region. SorC is regulated by sorbose and other members of this family are likely to be regulated by other sugar substrates.; GO: 0030246 carbohydrate binding; PDB: 3KV1_A 3EFB_C 2W48_A 3BXH_A 3BXE_A 2OKG_A 3BXF_A 3BXG_A 2R5F_A 2O0M_A ....
Probab=37.60 E-value=2.2e+02 Score=26.56 Aligned_cols=79 Identities=20% Similarity=0.122 Sum_probs=43.1
Q ss_pred HHHHHHHh--CCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcCCCCCeEE
Q 019410 200 LKEKLLKE--GRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVH 277 (341)
Q Consensus 200 ~a~~l~~~--g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~~~~~rVi 277 (341)
+.+++++. -+..+++|....+..........+.+.++++- +.+. ++++|.|.|+.-++..+.. .+...+.
T Consensus 9 Le~~L~~~fgLk~~~Vv~~~~~~~~~~~~l~~~aA~~L~~~l------~~~~-~iGv~wG~Tl~~~~~~l~~-~~~~~~~ 80 (255)
T PF04198_consen 9 LEEELKEKFGLKEVIVVPSPSDDEDILESLGEAAAEYLSELL------KDGD-VIGVGWGRTLYAVANHLPP-KSLPNVT 80 (255)
T ss_dssp HHHHHHHHHTSSEEEEESSSTTTHHHHHHHHHHHHHHHHHH--------TTE-EEEE-TSHHHHHHHHTS---SSSSCEE
T ss_pred HHHHHHHHhCCCEEEEecCCCChHHHHHHHHHHHHHHHHHhC------CCCC-EEEEcchHHHHHHHHhcCc-cCCCCcE
Confidence 34444443 23578888665433333333344445444442 2333 8889999999999888776 3444566
Q ss_pred EEeeCCCCc
Q 019410 278 AFSVCDDPD 286 (341)
Q Consensus 278 gVe~~g~~~ 286 (341)
-|+..|+..
T Consensus 81 vV~l~Gg~~ 89 (255)
T PF04198_consen 81 VVPLIGGVG 89 (255)
T ss_dssp EEESBSBTT
T ss_pred EEECCCCCC
Confidence 677777543
No 197
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=37.42 E-value=1.7e+02 Score=27.64 Aligned_cols=55 Identities=16% Similarity=0.140 Sum_probs=31.6
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHc-----------CCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECC
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYL-----------NLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISK 185 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~-----------Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~ 185 (341)
..++|.||+.+|.-...+ +..++ +=+.+|+++.... ......++.+|++++.++-
T Consensus 59 ~~~~t~ggt~a~~~al~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~h--------~~~~~~~~~~g~~~~~v~~ 124 (345)
T cd06450 59 DGVFTSGGSESNLLALLA-ARDRARKRLKAGGGRGIDKLVIVCSDQAH--------VSVEKAAAYLDVKVRLVPV 124 (345)
T ss_pred CEEEeCChhHHHHHHHHH-HHHHhhhhhhcccccccCCeEEEEcCcch--------hHHHHHHHHHhcCeEEeee
Confidence 366788887777643333 22221 1245677665432 1234566777999988863
No 198
>PRK08862 short chain dehydrogenase; Provisional
Probab=37.31 E-value=1.1e+02 Score=27.52 Aligned_cols=38 Identities=13% Similarity=0.121 Sum_probs=17.5
Q ss_pred HHHHHHcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEE
Q 019410 113 MADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLI 152 (341)
Q Consensus 113 l~~A~~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~iv 152 (341)
.....++|...++ .+- .-+....++...+..|-+.+.+
T Consensus 22 a~~la~~G~~V~~-~~r-~~~~l~~~~~~i~~~~~~~~~~ 59 (227)
T PRK08862 22 SCHFARLGATLIL-CDQ-DQSALKDTYEQCSALTDNVYSF 59 (227)
T ss_pred HHHHHHCCCEEEE-EcC-CHHHHHHHHHHHHhcCCCeEEE
Confidence 3334456665333 332 2233344444445556555444
No 199
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=37.23 E-value=2.5e+02 Score=24.87 Aligned_cols=31 Identities=32% Similarity=0.364 Sum_probs=22.7
Q ss_pred eEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcC
Q 019410 123 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 155 (341)
Q Consensus 123 ~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~ 155 (341)
.+|| |+ +|..|.++|......|.+++++.+.
T Consensus 10 vlVt-G~-sg~iG~~l~~~L~~~G~~Vi~~~r~ 40 (239)
T PRK07666 10 ALIT-GA-GRGIGRAVAIALAKEGVNVGLLART 40 (239)
T ss_pred EEEE-cC-CchHHHHHHHHHHHCCCEEEEEeCC
Confidence 3444 54 5789999998888899987776553
No 200
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=36.96 E-value=3e+02 Score=24.41 Aligned_cols=53 Identities=13% Similarity=0.069 Sum_probs=33.7
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECC
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISK 185 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~ 185 (341)
+.+|| |+ +|.-|.++|......|.+++++-+... ......++.++.++..+.-
T Consensus 7 ~vlIt-Ga-s~gIG~~ia~~l~~~G~~vi~~~r~~~---------~~~~~~~~~~~~~~~~~~~ 59 (248)
T TIGR01832 7 VALVT-GA-NTGLGQGIAVGLAEAGADIVGAGRSEP---------SETQQQVEALGRRFLSLTA 59 (248)
T ss_pred EEEEE-CC-CchHHHHHHHHHHHCCCEEEEEcCchH---------HHHHHHHHhcCCceEEEEC
Confidence 34554 54 467999999999999998777754321 1123445556766666553
No 201
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=36.66 E-value=2.9e+02 Score=27.30 Aligned_cols=45 Identities=20% Similarity=0.137 Sum_probs=24.7
Q ss_pred HHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcC-----------------CCCCeEEEEeeC
Q 019410 232 KEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLG-----------------TLKAKVHAFSVC 282 (341)
Q Consensus 232 ~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~-----------------~~~~rVigVe~~ 282 (341)
.|+.+++.+ ..+|. |+++|+|..+ =++++.... .+..++|+|...
T Consensus 76 ~~~~~~~~~----~~~D~-IIaiGGGS~i-D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTT 137 (382)
T cd08187 76 REGIELCKE----EKVDF-ILAVGGGSVI-DSAKAIAAGAPYDGDVWDFFTGKAKIEKALPVGTVLTL 137 (382)
T ss_pred HHHHHHHHH----cCCCE-EEEeCChHHH-HHHHHHHhHhhCCCCHHHHhcccCCCCCCCCEEEEeCC
Confidence 444444442 34665 6678876653 344433221 245789999864
No 202
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=36.58 E-value=39 Score=26.18 Aligned_cols=32 Identities=16% Similarity=0.318 Sum_probs=20.9
Q ss_pred EcCCchhHHHHHHHHHhcCCCCCeEEEEeeCCC
Q 019410 252 VACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDD 284 (341)
Q Consensus 252 v~vGtGGt~aGl~~~~k~~~~~~rVigVe~~g~ 284 (341)
+++|+|..+.-+...+ ..++..+++||+....
T Consensus 4 lgcG~G~~~~~l~~~~-~~~~~~~~~gvD~s~~ 35 (101)
T PF13649_consen 4 LGCGTGRVTRALARRF-DAGPSSRVIGVDISPE 35 (101)
T ss_dssp ET-TTSHHHHHHHHHS------SEEEEEES-HH
T ss_pred eecCCcHHHHHHHHHh-hhcccceEEEEECCHH
Confidence 6789999988888776 4456789999998743
No 203
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=36.40 E-value=37 Score=28.78 Aligned_cols=30 Identities=20% Similarity=0.248 Sum_probs=23.9
Q ss_pred EEeCCCcchHHHHHHHHHHHcCCeEEEEEcCC
Q 019410 125 ITIGGIQSNHCRAAAVAAKYLNLDCYLILRTS 156 (341)
Q Consensus 125 Vt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~ 156 (341)
+-+|+ |.-++++|..++.+|++++++=|..
T Consensus 2 ~I~Ga--G~va~al~~la~~lg~~v~v~d~r~ 31 (136)
T PF13478_consen 2 VIFGA--GHVARALARLAALLGFRVTVVDPRP 31 (136)
T ss_dssp EEES---STCHHHHHHHHHHCTEEEEEEES-C
T ss_pred EEEeC--cHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 34565 7889999999999999999997753
No 204
>PRK07791 short chain dehydrogenase; Provisional
Probab=36.33 E-value=3.6e+02 Score=25.05 Aligned_cols=32 Identities=22% Similarity=0.048 Sum_probs=23.2
Q ss_pred CCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEc
Q 019410 121 ADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 154 (341)
Q Consensus 121 ~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp 154 (341)
...||| |+ ++.-|.++|....+.|.+++++..
T Consensus 7 k~~lIT-Ga-s~GIG~aia~~la~~G~~vii~~~ 38 (286)
T PRK07791 7 RVVIVT-GA-GGGIGRAHALAFAAEGARVVVNDI 38 (286)
T ss_pred CEEEEE-CC-CchHHHHHHHHHHHCCCEEEEeeC
Confidence 344555 54 368899999999999998777643
No 205
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=36.27 E-value=2.5e+02 Score=27.33 Aligned_cols=75 Identities=20% Similarity=0.328 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhCCC--cEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCC--CEEEEcCCchhH--HHHHHHHHhcC
Q 019410 197 TNILKEKLLKEGRR--PYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKF--DDIVVACGSGGT--IAGLSLGSWLG 270 (341)
Q Consensus 197 ~~~~a~~l~~~g~~--~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~--D~Ivv~vGtGGt--~aGl~~~~k~~ 270 (341)
.+.+.+.+.+.+-. .+.++.+-.|+.- ....++.+++.+ ..+ +.+|+++|+|.. ++|.+.....
T Consensus 40 ~~~l~~~L~~~g~~~~~~~~~~~e~~~~~-----~~v~~~~~~~~~----~~~~r~d~IIaiGGGsv~D~ak~vA~~~~- 109 (345)
T cd08195 40 LEKLKAALEAAGFEVEVIVIPAGEASKSL-----ETLEKLYDALLE----AGLDRKSLIIALGGGVVGDLAGFVAATYM- 109 (345)
T ss_pred HHHHHHHHHhcCCceEEEEeCCCCCcCCH-----HHHHHHHHHHHH----cCCCCCCeEEEECChHHHhHHHHHHHHHh-
Confidence 34455555544312 2345544444432 223455555543 123 247888998776 4554443333
Q ss_pred CCCCeEEEEeeC
Q 019410 271 TLKAKVHAFSVC 282 (341)
Q Consensus 271 ~~~~rVigVe~~ 282 (341)
..++++.|.+.
T Consensus 110 -rgip~i~VPTT 120 (345)
T cd08195 110 -RGIDFIQIPTT 120 (345)
T ss_pred -cCCCeEEcchh
Confidence 34677777753
No 206
>PRK12744 short chain dehydrogenase; Provisional
Probab=36.13 E-value=3.2e+02 Score=24.52 Aligned_cols=58 Identities=16% Similarity=0.058 Sum_probs=33.1
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEEC
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 184 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~ 184 (341)
..+|| |+ +|.-|.++|..-...|.+++++.......... .......++..|.++..+.
T Consensus 10 ~vlIt-Ga-~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~ 67 (257)
T PRK12744 10 VVLIA-GG-AKNLGGLIARDLAAQGAKAVAIHYNSAASKAD---AEETVAAVKAAGAKAVAFQ 67 (257)
T ss_pred EEEEE-CC-CchHHHHHHHHHHHCCCcEEEEecCCccchHH---HHHHHHHHHHhCCcEEEEe
Confidence 34444 54 46799999999999999977665432210000 0112333445677776554
No 207
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=36.12 E-value=1.3e+02 Score=29.87 Aligned_cols=48 Identities=19% Similarity=0.165 Sum_probs=34.4
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEE
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIE 181 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~ 181 (341)
++|+..|+ |--|.+++..|+.+|.+.+++.... ..++.+.+.+||+.+
T Consensus 187 ~~VlV~G~--G~iG~~aiqlAk~~Ga~~vi~~d~~----------~~r~~~a~~~Ga~~v 234 (393)
T TIGR02819 187 STVYIAGA--GPVGLAAAASAQLLGAAVVIVGDLN----------PARLAQARSFGCETV 234 (393)
T ss_pred CEEEEECC--CHHHHHHHHHHHHcCCceEEEeCCC----------HHHHHHHHHcCCeEE
Confidence 45544543 7899999999999999877654322 136888899999853
No 208
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=36.05 E-value=1.8e+02 Score=26.32 Aligned_cols=96 Identities=11% Similarity=0.104 Sum_probs=43.4
Q ss_pred HHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcCCCCCeEEEEeeCCCCccchHh-HHHHhhcccCC-CCCCc
Q 019410 230 AIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDY-TQGLLDGLNAG-VDSRD 307 (341)
Q Consensus 230 ~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~~~~~rVigVe~~g~~~~~~~~-i~~l~~~~~~~-~~~~~ 307 (341)
+..+|.+++.+ .+-.||.|++-++||=..+-+..-+ +.-. .+.++.++.-.....+. -..+.+..-.+ +.-..
T Consensus 15 ~~~~lA~kI~~--s~~~PDvIiaiaRGG~~pariLsd~-L~~~--~l~~i~v~~y~~~~~~~~~~~v~~~~~~d~l~Gkk 89 (192)
T COG2236 15 LCRALAEKIRA--SGFKPDVIVAIARGGLIPARILSDF-LGVK--PLYSIKVEHYDETAERDGEAKVKYPITIDPLSGKK 89 (192)
T ss_pred HHHHHHHHHHH--cCCCCCEEEEEcCCceehHHHHHHH-hCCC--ceEEEEEEEehhhcccCCcceeecCccccccCCCe
Confidence 34455555532 2457998877665554444443333 2112 44444444322211111 00122222223 34446
Q ss_pred eEEeccchHHHHHHHHHHHHHhc
Q 019410 308 IVNIQNVSVYMTFKNILMNILMN 330 (341)
Q Consensus 308 iv~v~d~~~~~~~~~~~~~~~~~ 330 (341)
|.-|+|-..-+.-...+-+.|+.
T Consensus 90 VLIVDDI~DTG~Tl~~a~~~l~~ 112 (192)
T COG2236 90 VLIVDDIVDTGETLELALEELKK 112 (192)
T ss_pred EEEEecccCchHhHHHHHHHHHh
Confidence 66666665555555555555554
No 209
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=35.77 E-value=2.3e+02 Score=24.84 Aligned_cols=75 Identities=19% Similarity=0.186 Sum_probs=46.9
Q ss_pred CCCEEEEcCCchhHHHHHHHHHhcCCCCCeEEEEeeCCCCccchHhHHHHhhcccCCCCCCceEEeccchHHHHHHHHHH
Q 019410 246 KFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDYTQGLLDGLNAGVDSRDIVNIQNVSVYMTFKNILM 325 (341)
Q Consensus 246 ~~D~Ivv~vGtGGt~aGl~~~~k~~~~~~rVigVe~~g~~~~~~~~i~~l~~~~~~~~~~~~iv~v~d~~~~~~~~~~~~ 325 (341)
.+++|+..+|+...+-|+..+.- ...|+||.+......+...+-++.+ +-.++.+ -.+-|.+. .+.-.+|.
T Consensus 57 g~~viIAgAGgAAHLPGmvAa~T----~lPViGVPv~s~~L~GlDSL~SiVQ-MP~GvPV-aTvaIg~a---~NAallAa 127 (162)
T COG0041 57 GVKVIIAGAGGAAHLPGMVAAKT----PLPVIGVPVQSKALSGLDSLLSIVQ-MPAGVPV-ATVAIGNA---ANAALLAA 127 (162)
T ss_pred CCeEEEecCcchhhcchhhhhcC----CCCeEeccCccccccchHHHHHHhc-CCCCCee-EEEeecch---hhHHHHHH
Confidence 47889999998888999987753 4689999998766655555555543 2223432 22333333 44445555
Q ss_pred HHHh
Q 019410 326 NILM 329 (341)
Q Consensus 326 ~~~~ 329 (341)
.||-
T Consensus 128 ~ILa 131 (162)
T COG0041 128 QILA 131 (162)
T ss_pred HHHc
Confidence 5553
No 210
>TIGR03614 RutB pyrimidine utilization protein B. RL Proc Natl Acad Sci U S A. 2006 Mar 28;103(13):5114-9. Epub 2006 Mar 15.
Probab=35.74 E-value=96 Score=28.26 Aligned_cols=41 Identities=10% Similarity=0.023 Sum_probs=31.5
Q ss_pred HHcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCC
Q 019410 117 VAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSK 157 (341)
Q Consensus 117 ~~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~ 157 (341)
++.|.++||.+|-+.-.-..+.|.-|..+|++++++-+...
T Consensus 147 r~~gI~~lvi~Gv~T~~CV~sTar~A~~~Gy~v~vv~Da~a 187 (226)
T TIGR03614 147 RARGIRNLVFTGIATNVCVESTLRDGFHLEYFGVVLEDATH 187 (226)
T ss_pred HHCCCCEEEEeccCccHhHHHHHHHHHHCCCEEEEechhcc
Confidence 46789999987655444446788999999999999987654
No 211
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=35.67 E-value=2.8e+02 Score=27.90 Aligned_cols=76 Identities=18% Similarity=0.225 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHc-----CC---CeEEEeCCCcchHHHHHH--HHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhC
Q 019410 107 RKLEFLMADAVAQ-----GA---DCIITIGGIQSNHCRAAA--VAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLV 176 (341)
Q Consensus 107 Rkl~~ll~~A~~~-----g~---~~vVt~G~s~GNhg~AlA--~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~ 176 (341)
|.+..++++|+++ |+ ..+.|.|++-+|...=.. .+-+...-.-+|+++.... +.....++.++..
T Consensus 40 ~~A~~~ve~AR~~iA~llga~~~eIiFTSG~TEsnNlaI~g~~~a~~~~~~~~HIIts~iEH-----~aVl~~~~~Le~~ 114 (386)
T COG1104 40 REARKAVEEAREQIAKLLGADPEEIIFTSGATESNNLAIKGAALAYRNAQKGKHIITSAIEH-----PAVLNTCRYLERQ 114 (386)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCeEEEecCCcHHHHHHHHhhHHhhhcccCCCeEEEccccc-----HHHHHHHHHHHhc
Confidence 3444446665543 33 345589999998854333 3333334455777765431 1111123444556
Q ss_pred CCEEEEECCcc
Q 019410 177 GAHIELISKEE 187 (341)
Q Consensus 177 GAeV~~v~~~~ 187 (341)
|-+|.+.+-+.
T Consensus 115 g~~Vtyl~V~~ 125 (386)
T COG1104 115 GFEVTYLPVDS 125 (386)
T ss_pred CCeEEEeCCCC
Confidence 99998887543
No 212
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=35.58 E-value=3.1e+02 Score=24.16 Aligned_cols=55 Identities=11% Similarity=0.012 Sum_probs=34.5
Q ss_pred eEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECC
Q 019410 123 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISK 185 (341)
Q Consensus 123 ~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~ 185 (341)
+++..|+ +|.-|.++|....+.|.+++++.+..... ......++..+.++..+..
T Consensus 8 ~ilItGa-sg~iG~~l~~~l~~~g~~V~~~~r~~~~~-------~~~~~~l~~~~~~~~~~~~ 62 (251)
T PRK12826 8 VALVTGA-ARGIGRAIAVRLAADGAEVIVVDICGDDA-------AATAELVEAAGGKARARQV 62 (251)
T ss_pred EEEEcCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHH-------HHHHHHHHhcCCeEEEEEC
Confidence 3443454 58999999999999999887776643210 1123344556777766543
No 213
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=35.58 E-value=2.2e+02 Score=27.97 Aligned_cols=57 Identities=28% Similarity=0.254 Sum_probs=35.9
Q ss_pred HHHcCCCeEEEeCCCcchHHH-----------HHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchh-HHHHHhCCCEEEEE
Q 019410 116 AVAQGADCIITIGGIQSNHCR-----------AAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGN-LLVERLVGAHIELI 183 (341)
Q Consensus 116 A~~~g~~~vVt~G~s~GNhg~-----------AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn-~~~~~~~GAeV~~v 183 (341)
|.+.|+.+||. ||||- +|.-.-+..+=+..|+++...- +|+ +....++||+-+++
T Consensus 240 Ave~G~~GIIV-----SNHGgRQlD~vpAtI~~L~Evv~aV~~ri~V~lDGGVR--------~G~DVlKALALGAk~Vfi 306 (363)
T KOG0538|consen 240 AVEAGVAGIIV-----SNHGGRQLDYVPATIEALPEVVKAVEGRIPVFLDGGVR--------RGTDVLKALALGAKGVFI 306 (363)
T ss_pred HHHhCCceEEE-----eCCCccccCcccchHHHHHHHHHHhcCceEEEEecCcc--------cchHHHHHHhcccceEEe
Confidence 45678888775 47762 3444445555566777776652 222 66666778888887
Q ss_pred CC
Q 019410 184 SK 185 (341)
Q Consensus 184 ~~ 185 (341)
++
T Consensus 307 GR 308 (363)
T KOG0538|consen 307 GR 308 (363)
T ss_pred cC
Confidence 76
No 214
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=35.35 E-value=2.1e+02 Score=25.86 Aligned_cols=54 Identities=13% Similarity=0.094 Sum_probs=33.6
Q ss_pred CCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEEC
Q 019410 120 GADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 184 (341)
Q Consensus 120 g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~ 184 (341)
|...+|| |+ .|.-|.++|....+.|.+++++-.... ......++..|.++..+.
T Consensus 10 ~k~~lIt-G~-~~gIG~a~a~~l~~~G~~vv~~~~~~~---------~~~~~~~~~~~~~~~~~~ 63 (253)
T PRK08993 10 GKVAVVT-GC-DTGLGQGMALGLAEAGCDIVGINIVEP---------TETIEQVTALGRRFLSLT 63 (253)
T ss_pred CCEEEEE-CC-CchHHHHHHHHHHHCCCEEEEecCcch---------HHHHHHHHhcCCeEEEEE
Confidence 3344555 44 479999999999999998776522111 112344555676766554
No 215
>PRK07890 short chain dehydrogenase; Provisional
Probab=35.27 E-value=3.3e+02 Score=24.31 Aligned_cols=31 Identities=26% Similarity=0.236 Sum_probs=23.6
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEc
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 154 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp 154 (341)
+.+|| || +|.-|+++|......|.+++++-+
T Consensus 7 ~vlIt-Ga-~~~IG~~la~~l~~~G~~V~~~~r 37 (258)
T PRK07890 7 VVVVS-GV-GPGLGRTLAVRAARAGADVVLAAR 37 (258)
T ss_pred EEEEE-CC-CCcHHHHHHHHHHHcCCEEEEEeC
Confidence 44554 54 478999999999999998776654
No 216
>PRK09134 short chain dehydrogenase; Provisional
Probab=35.21 E-value=3.4e+02 Score=24.43 Aligned_cols=32 Identities=19% Similarity=0.215 Sum_probs=24.4
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcC
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 155 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~ 155 (341)
..+|| |+ +|.-|..+|....+.|.+++++...
T Consensus 11 ~vlIt-Ga-s~giG~~la~~l~~~g~~v~~~~~~ 42 (258)
T PRK09134 11 AALVT-GA-ARRIGRAIALDLAAHGFDVAVHYNR 42 (258)
T ss_pred EEEEe-CC-CcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 34555 54 4789999999999999988777553
No 217
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=35.17 E-value=1.8e+02 Score=28.66 Aligned_cols=72 Identities=24% Similarity=0.277 Sum_probs=46.6
Q ss_pred eEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCC-C-EEEEECCccccccCcHHHHHHH
Q 019410 123 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVG-A-HIELISKEEYSKIGSVTLTNIL 200 (341)
Q Consensus 123 ~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~G-A-eV~~v~~~~~~~~~~~~~~~~~ 200 (341)
+|-|.| |-++..+..-|+.-|+++++|...... +.-+.|+ | +++++++ |.+. .-+++
T Consensus 20 ~Iat~g---SHSaL~Il~GAK~EGF~Ti~v~~~gr~------------~~Y~~f~~a~e~i~v~~--f~di----l~~~i 78 (361)
T COG1759 20 TIATIG---SHSALQILDGAKEEGFRTIAVCQRGRE------------KPYEKFPVADEVIIVDK--FSDI----LNEEI 78 (361)
T ss_pred EEEEee---cchHHHHhhhHHhcCCcEEEEEecCcc------------chHHhhchhheEEEech--hHHH----hhHHH
Confidence 344665 467889999999999999999875542 1223333 3 8888874 4331 22345
Q ss_pred HHHHHHhCCCcEEeCCC
Q 019410 201 KEKLLKEGRRPYVIPVG 217 (341)
Q Consensus 201 a~~l~~~g~~~~~ip~g 217 (341)
.++|.+. +..+||.+
T Consensus 79 qe~L~~~--n~I~IP~g 93 (361)
T COG1759 79 QEELREL--NAIFIPHG 93 (361)
T ss_pred HHHHHHc--CeEEecCC
Confidence 5666653 47888865
No 218
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=34.63 E-value=1.3e+02 Score=29.11 Aligned_cols=49 Identities=12% Similarity=0.043 Sum_probs=33.8
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEE
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 182 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~ 182 (341)
++|+..|+ |.-|.+++..|+.+|.+.++.+.... .++..++.+||+.++
T Consensus 188 ~~VlV~G~--G~vG~~a~~~ak~~G~~~vi~~~~~~----------~~~~~~~~lGa~~~i 236 (368)
T cd08300 188 STVAVFGL--GAVGLAVIQGAKAAGASRIIGIDINP----------DKFELAKKFGATDCV 236 (368)
T ss_pred CEEEEECC--CHHHHHHHHHHHHcCCCeEEEEeCCH----------HHHHHHHHcCCCEEE
Confidence 45555553 78999999999999995444443221 257778889997544
No 219
>cd01014 nicotinamidase_related Nicotinamidase_ related amidohydrolases. Cysteine hydrolases of unknown function that share the catalytic triad with other amidohydrolases, like nicotinamidase, which converts nicotinamide to nicotinic acid and ammonia.
Probab=34.58 E-value=1.1e+02 Score=26.05 Aligned_cols=41 Identities=15% Similarity=0.204 Sum_probs=31.8
Q ss_pred HHcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCC
Q 019410 117 VAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSK 157 (341)
Q Consensus 117 ~~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~ 157 (341)
++.|.++|+.+|-....--.+.|.-|..+|++++++.+...
T Consensus 95 ~~~gi~~viv~G~~td~CV~~Ta~~a~~~g~~v~vi~Da~~ 135 (155)
T cd01014 95 REAGIDHLVICGAMTEMCVDTTVRSAFDLGYDVTVVADACA 135 (155)
T ss_pred HHCCCCEEEEEeeccchhHHHHHHHHHHCCCcEEEeccccc
Confidence 46788999887755545567889999999999999876554
No 220
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=34.52 E-value=1.9e+02 Score=28.53 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=14.5
Q ss_pred HHHHHHHHhcCCCCCCCCEEEEcCCchhHH
Q 019410 231 IKEIEQQLQTGTGGVKFDDIVVACGSGGTI 260 (341)
Q Consensus 231 a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~ 260 (341)
..|+.+++.+ ..+| +|+++|+|..+
T Consensus 76 v~~~~~~~~~----~~~D-~IIaiGGGS~i 100 (382)
T PRK10624 76 VKEGVEVFKA----SGAD-YLIAIGGGSPQ 100 (382)
T ss_pred HHHHHHHHHh----cCCC-EEEEeCChHHH
Confidence 3445555542 3466 57778887653
No 221
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=34.40 E-value=1.6e+02 Score=27.87 Aligned_cols=47 Identities=15% Similarity=0.097 Sum_probs=32.8
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEE
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIE 181 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~ 181 (341)
++|+..|+ .|..|++++..|+.+|.+++++.+.. +...++.+|++.+
T Consensus 179 ~~vlI~g~-~g~ig~~~~~~a~~~g~~vi~~~~~~------------~~~~~~~~g~~~~ 225 (350)
T cd08274 179 ETVLVTGA-SGGVGSALVQLAKRRGAIVIAVAGAA------------KEEAVRALGADTV 225 (350)
T ss_pred CEEEEEcC-CcHHHHHHHHHHHhcCCEEEEEeCch------------hhHHHHhcCCeEE
Confidence 45555554 57899999999999999965554321 3556678999743
No 222
>PRK05993 short chain dehydrogenase; Provisional
Probab=34.38 E-value=3.7e+02 Score=24.64 Aligned_cols=49 Identities=16% Similarity=0.097 Sum_probs=32.5
Q ss_pred eEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEEC
Q 019410 123 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 184 (341)
Q Consensus 123 ~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~ 184 (341)
.+|| |+ +|.-|.++|......|.+++++.+... ++..+...|.+++.++
T Consensus 7 vlIt-Ga-sggiG~~la~~l~~~G~~Vi~~~r~~~-----------~~~~l~~~~~~~~~~D 55 (277)
T PRK05993 7 ILIT-GC-SSGIGAYCARALQSDGWRVFATCRKEE-----------DVAALEAEGLEAFQLD 55 (277)
T ss_pred EEEe-CC-CcHHHHHHHHHHHHCCCEEEEEECCHH-----------HHHHHHHCCceEEEcc
Confidence 3444 54 579999999999999999887765321 2444445566665554
No 223
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=34.38 E-value=3.1e+02 Score=26.61 Aligned_cols=73 Identities=21% Similarity=0.062 Sum_probs=40.9
Q ss_pred CCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCC-CEEEEECCccccccCcHHHHH
Q 019410 120 GADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVG-AHIELISKEEYSKIGSVTLTN 198 (341)
Q Consensus 120 g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~G-AeV~~v~~~~~~~~~~~~~~~ 198 (341)
|...+||-| ++-.|+++|.-.+++|-+.+++=-+... ....+..++..| |.-..++=..+++ +.
T Consensus 38 g~~vLITGg--g~GlGr~ialefa~rg~~~vl~Din~~~-------~~etv~~~~~~g~~~~y~cdis~~ee------i~ 102 (300)
T KOG1201|consen 38 GEIVLITGG--GSGLGRLIALEFAKRGAKLVLWDINKQG-------NEETVKEIRKIGEAKAYTCDISDREE------IY 102 (300)
T ss_pred CCEEEEeCC--CchHHHHHHHHHHHhCCeEEEEeccccc-------hHHHHHHHHhcCceeEEEecCCCHHH------HH
Confidence 334556633 3679999999999999955554222221 123456666667 3344444332222 34
Q ss_pred HHHHHHHHh
Q 019410 199 ILKEKLLKE 207 (341)
Q Consensus 199 ~~a~~l~~~ 207 (341)
+++++++++
T Consensus 103 ~~a~~Vk~e 111 (300)
T KOG1201|consen 103 RLAKKVKKE 111 (300)
T ss_pred HHHHHHHHh
Confidence 456666654
No 224
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=34.35 E-value=3.3e+02 Score=24.14 Aligned_cols=53 Identities=11% Similarity=0.021 Sum_probs=33.8
Q ss_pred eEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEEC
Q 019410 123 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 184 (341)
Q Consensus 123 ~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~ 184 (341)
.+|| |+ +|.-|.++|..-...|.+++++.+..... ......++..+.++..+.
T Consensus 7 vlIt-G~-sg~iG~~la~~l~~~g~~v~~~~r~~~~~-------~~~~~~~~~~~~~~~~~~ 59 (258)
T PRK12429 7 ALVT-GA-ASGIGLEIALALAKEGAKVVIADLNDEAA-------AAAAEALQKAGGKAIGVA 59 (258)
T ss_pred EEEE-CC-CchHHHHHHHHHHHCCCeEEEEeCCHHHH-------HHHHHHHHhcCCcEEEEE
Confidence 4454 54 47899999999889999988876643210 111234455677766554
No 225
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=34.34 E-value=4.1e+02 Score=25.20 Aligned_cols=34 Identities=9% Similarity=0.057 Sum_probs=26.5
Q ss_pred CCCEEEEcCCchhHHHHHHHHHhcCCC-CCeEEEEee
Q 019410 246 KFDDIVVACGSGGTIAGLSLGSWLGTL-KAKVHAFSV 281 (341)
Q Consensus 246 ~~D~Ivv~vGtGGt~aGl~~~~k~~~~-~~rVigVe~ 281 (341)
++|+||+ .+..++.|+..++++.+. ++.|+|++-
T Consensus 225 ~~~ai~~--~~d~~A~gvl~al~~~Gl~~vpVvg~D~ 259 (330)
T PRK15395 225 KIEVVIA--NNDAMAMGAVEALKAHNKSSIPVFGVDA 259 (330)
T ss_pred CeeEEEE--CCchHHHHHHHHHHhcCCCCCeEEeeCC
Confidence 4788775 466778899999999888 777887654
No 226
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=34.32 E-value=1e+02 Score=29.93 Aligned_cols=50 Identities=20% Similarity=0.184 Sum_probs=35.0
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEE
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELI 183 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v 183 (341)
++|+..|+ +|.-|..+...|+.+|...+++.. . ..|...++.+||+.+..
T Consensus 144 ~~VLV~ga-aGgVG~~aiQlAk~~G~~~v~~~~-s----------~~k~~~~~~lGAd~vi~ 193 (326)
T COG0604 144 ETVLVHGA-AGGVGSAAIQLAKALGATVVAVVS-S----------SEKLELLKELGADHVIN 193 (326)
T ss_pred CEEEEecC-CchHHHHHHHHHHHcCCcEEEEec-C----------HHHHHHHHhcCCCEEEc
Confidence 55555554 478999999999999994444433 2 13566899999976553
No 227
>PRK07063 short chain dehydrogenase; Provisional
Probab=34.29 E-value=3.5e+02 Score=24.32 Aligned_cols=31 Identities=19% Similarity=-0.003 Sum_probs=22.5
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEc
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 154 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp 154 (341)
..+|| |+ +|--|.++|..-...|.+++++-+
T Consensus 9 ~vlVt-Ga-s~gIG~~~a~~l~~~G~~vv~~~r 39 (260)
T PRK07063 9 VALVT-GA-AQGIGAAIARAFAREGAAVALADL 39 (260)
T ss_pred EEEEE-CC-CchHHHHHHHHHHHCCCEEEEEeC
Confidence 34454 54 468899999988899998776654
No 228
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=34.23 E-value=2.7e+02 Score=24.63 Aligned_cols=100 Identities=14% Similarity=0.015 Sum_probs=53.1
Q ss_pred HHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCccccccCcHHHHHHHHHHHHHhCCCcEEe
Q 019410 135 CRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVI 214 (341)
Q Consensus 135 g~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~a~~l~~~g~~~~~i 214 (341)
|..+..+++.+|.+..--++... . ...-+......|..|.+++... +.++++++.++++.++.-++
T Consensus 13 G~~iv~~~r~~g~~~~~Rv~G~d--l-----~~~l~~~~~~~~~~vfllG~~~-------~v~~~~~~~l~~~yP~l~i~ 78 (177)
T TIGR00696 13 GIGVVWGLKLLGYPQQSRVAGPD--L-----MEELCQRAGKEKLPIFLYGGKP-------DVLQQLKVKLIKEYPKLKIV 78 (177)
T ss_pred cHHHHHHHHHcCCCCCCccChHH--H-----HHHHHHHHHHcCCeEEEECCCH-------HHHHHHHHHHHHHCCCCEEE
Confidence 46788899999865321121110 0 0111333445677888887532 23455666776654433222
Q ss_pred C-CCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhH
Q 019410 215 P-VGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGT 259 (341)
Q Consensus 215 p-~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt 259 (341)
- .++-++. --.+|.+++.. ..+|.|+|+.|+---
T Consensus 79 g~~g~f~~~-------~~~~i~~~I~~----s~~dil~VglG~PkQ 113 (177)
T TIGR00696 79 GAFGPLEPE-------ERKAALAKIAR----SGAGIVFVGLGCPKQ 113 (177)
T ss_pred EECCCCChH-------HHHHHHHHHHH----cCCCEEEEEcCCcHh
Confidence 1 2222221 12345566653 469999999998653
No 229
>PRK06949 short chain dehydrogenase; Provisional
Probab=34.18 E-value=3.4e+02 Score=24.19 Aligned_cols=33 Identities=15% Similarity=0.041 Sum_probs=24.0
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcC
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 155 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~ 155 (341)
++++..| .+|.-|.++|....+.|.+++++.+.
T Consensus 10 k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~ 42 (258)
T PRK06949 10 KVALVTG-ASSGLGARFAQVLAQAGAKVVLASRR 42 (258)
T ss_pred CEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3444445 44789999999999999987766553
No 230
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=34.12 E-value=1.4e+02 Score=28.90 Aligned_cols=49 Identities=10% Similarity=0.011 Sum_probs=34.0
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEE
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 182 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~ 182 (341)
++|+..|+ |--|.+++..|+.+|.+.++++.... .+...++.+||+.++
T Consensus 189 ~~VlV~G~--g~vG~~a~q~ak~~G~~~vi~~~~~~----------~~~~~~~~~Ga~~~i 237 (369)
T cd08301 189 STVAIFGL--GAVGLAVAEGARIRGASRIIGVDLNP----------SKFEQAKKFGVTEFV 237 (369)
T ss_pred CEEEEECC--CHHHHHHHHHHHHcCCCeEEEEcCCH----------HHHHHHHHcCCceEE
Confidence 55555553 79999999999999995444443221 257788999996544
No 231
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=33.83 E-value=55 Score=32.23 Aligned_cols=28 Identities=29% Similarity=0.332 Sum_probs=21.5
Q ss_pred EEeCCCcchHHHHHHHHHHHcCCeEEEEEc
Q 019410 125 ITIGGIQSNHCRAAAVAAKYLNLDCYLILR 154 (341)
Q Consensus 125 Vt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp 154 (341)
|..|+ |..|...|+.|++.|.+++|+=.
T Consensus 3 vVIG~--G~AGl~AA~~Aae~G~~V~lvek 30 (417)
T PF00890_consen 3 VVIGG--GLAGLAAAIEAAEAGAKVLLVEK 30 (417)
T ss_dssp EEE-S--SHHHHHHHHHHHHTTT-EEEEES
T ss_pred EEECC--CHHHHHHHHHHhhhcCeEEEEEe
Confidence 33565 89999999999999998888754
No 232
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=33.50 E-value=1.2e+02 Score=28.94 Aligned_cols=49 Identities=18% Similarity=0.185 Sum_probs=34.6
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEE
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 182 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~ 182 (341)
++|+..|+ |..|.+++..|+.+|.+.++++.... .+...++.+|++-++
T Consensus 162 ~~vlV~G~--g~vG~~~~~~a~~~G~~~v~~~~~~~----------~~~~~~~~~Ga~~~i 210 (347)
T PRK10309 162 KNVIIIGA--GTIGLLAIQCAVALGAKSVTAIDINS----------EKLALAKSLGAMQTF 210 (347)
T ss_pred CEEEEECC--CHHHHHHHHHHHHcCCCeEEEECCCH----------HHHHHHHHcCCceEe
Confidence 45555553 78999999999999998665554322 256778889986543
No 233
>PLN02238 hypoxanthine phosphoribosyltransferase
Probab=33.48 E-value=3.5e+02 Score=24.08 Aligned_cols=30 Identities=10% Similarity=0.334 Sum_probs=22.5
Q ss_pred CCCCCceEEeccc-hHHHHHHHHHHHHHhcC
Q 019410 302 GVDSRDIVNIQNV-SVYMTFKNILMNILMNG 331 (341)
Q Consensus 302 ~~~~~~iv~v~d~-~~~~~~~~~~~~~~~~~ 331 (341)
.+.-++++-|+|- +.-.|++.++..+...|
T Consensus 94 ~v~gk~VliVDDIidTG~Tl~~~~~~l~~~g 124 (189)
T PLN02238 94 DVKGKHVLLVEDIVDTGNTLSALVAHLEAKG 124 (189)
T ss_pred CCCCCEEEEEecccchHHHHHHHHHHHHhCC
Confidence 4566688888888 77888888887776654
No 234
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=33.47 E-value=1.6e+02 Score=27.28 Aligned_cols=48 Identities=13% Similarity=0.102 Sum_probs=32.3
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEE
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIE 181 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~ 181 (341)
++|+..|+ .|--|++++..|+.+|.+.+++.+... +...++.+|++-+
T Consensus 141 ~~vlI~g~-~g~ig~~~~~~a~~~G~~v~~~~~~~~-----------~~~~~~~~g~~~~ 188 (324)
T cd08292 141 QWLIQNAA-GGAVGKLVAMLAAARGINVINLVRRDA-----------GVAELRALGIGPV 188 (324)
T ss_pred CEEEEccc-ccHHHHHHHHHHHHCCCeEEEEecCHH-----------HHHHHHhcCCCEE
Confidence 45554553 467999999999999998776655321 3455566787543
No 235
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=33.43 E-value=1.2e+02 Score=29.87 Aligned_cols=37 Identities=11% Similarity=0.085 Sum_probs=28.4
Q ss_pred HHcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcC
Q 019410 117 VAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 155 (341)
Q Consensus 117 ~~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~ 155 (341)
++...+.||+.|+.+.|.. +|.+|+.+|++++++++.
T Consensus 86 ~~~kPd~vi~~g~~~~~~~--~a~aa~~~gip~v~~i~P 122 (385)
T TIGR00215 86 KQAKPDLLVGIDAPDFNLT--KELKKKDPGIKIIYYISP 122 (385)
T ss_pred HhcCCCEEEEeCCCCccHH--HHHHHhhCCCCEEEEeCC
Confidence 3456788998887666764 567889999999998653
No 236
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. This protein is about double in length of, and devoid of homology to the form of phosphoglycerate mutase that uses 2,3-bisphosphoglycerate as a cofactor.
Probab=33.21 E-value=2.7e+02 Score=29.00 Aligned_cols=50 Identities=16% Similarity=0.125 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHcCCC----eEEEeCCCcc--hHHHHHHHHHHHcCCe---EEEEEcCCC
Q 019410 108 KLEFLMADAVAQGAD----CIITIGGIQS--NHCRAAAVAAKYLNLD---CYLILRTSK 157 (341)
Q Consensus 108 kl~~ll~~A~~~g~~----~vVt~G~s~G--Nhg~AlA~aa~~~Gl~---~~ivvp~~~ 157 (341)
.+..++..+.+.+.+ ++++-||..| +|..+|.-.|++.|++ .|++++...
T Consensus 93 ~l~~~~~~~~~~~~~lHl~GL~SdGgVHsh~~hl~~l~~~a~~~g~~~v~vH~~~DGRD 151 (501)
T TIGR01307 93 ALLGAIDRAKDNNGKLHLMGLVSDGGVHSHIDHLIALIELAAERGIEKVVLHAFTDGRD 151 (501)
T ss_pred HHHHHHHHHHhcCCceEEEEeccCCCCcchHHHHHHHHHHHHHcCCCeEEEEEecCCCC
Confidence 466678887765542 4567787666 8999999999999995 567777543
No 237
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=33.19 E-value=1.2e+02 Score=28.17 Aligned_cols=49 Identities=10% Similarity=0.034 Sum_probs=34.2
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEE
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 182 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~ 182 (341)
++|+..|+ .|..|.+++..|+.+|.+.+++.+.. .+...++.+|++-++
T Consensus 148 ~~vlI~g~-~g~vg~~~~~~a~~~g~~v~~~~~~~-----------~~~~~~~~~g~~~v~ 196 (326)
T cd08289 148 GPVLVTGA-TGGVGSLAVSILAKLGYEVVASTGKA-----------DAADYLKKLGAKEVI 196 (326)
T ss_pred CEEEEEcC-CchHHHHHHHHHHHCCCeEEEEecCH-----------HHHHHHHHcCCCEEE
Confidence 46665654 47899999999999999865554332 246667889985443
No 238
>PRK07677 short chain dehydrogenase; Provisional
Probab=33.11 E-value=3.6e+02 Score=24.13 Aligned_cols=30 Identities=30% Similarity=0.249 Sum_probs=22.2
Q ss_pred eEEEeCCCcchHHHHHHHHHHHcCCeEEEEEc
Q 019410 123 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 154 (341)
Q Consensus 123 ~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp 154 (341)
.+|| |+ +|.-|.++|......|.+++++-+
T Consensus 4 ~lIt-G~-s~giG~~ia~~l~~~G~~Vi~~~r 33 (252)
T PRK07677 4 VIIT-GG-SSGMGKAMAKRFAEEGANVVITGR 33 (252)
T ss_pred EEEe-CC-CChHHHHHHHHHHHCCCEEEEEeC
Confidence 3454 54 467999999999999997766644
No 239
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=33.08 E-value=1.9e+02 Score=30.55 Aligned_cols=63 Identities=17% Similarity=0.171 Sum_probs=43.3
Q ss_pred CCCEEEEcCCchhHHHHHHHHHhcCCCCCeEEEEeeCCCCccchHhHHHHhhcccCCCCCCceEEeccc
Q 019410 246 KFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDYTQGLLDGLNAGVDSRDIVNIQNV 314 (341)
Q Consensus 246 ~~D~Ivv~vGtGGt~aGl~~~~k~~~~~~rVigVe~~g~~~~~~~~i~~l~~~~~~~~~~~~iv~v~d~ 314 (341)
..+.||+.+|.-+.+.|+..++- ...||||.+......+...+.++++ +-+++. --.|.|.++
T Consensus 465 ~~~v~i~~ag~~~~l~~~~a~~t----~~pvi~vp~~~~~~~g~~~l~s~~~-~p~g~p-v~~v~i~~~ 527 (577)
T PLN02948 465 GLQVIIAGAGGAAHLPGMVASMT----PLPVIGVPVKTSHLDGLDSLLSIVQ-MPRGVP-VATVAIGNA 527 (577)
T ss_pred CCCEEEEEcCccccchHHHhhcc----CCCEEEcCCCCCCCCcHHHHHHHhc-CCCCCe-EEEEecCCh
Confidence 47899999999999999988864 4689999997665555555555554 433443 244555544
No 240
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=33.01 E-value=1.4e+02 Score=25.94 Aligned_cols=46 Identities=15% Similarity=0.063 Sum_probs=30.3
Q ss_pred CCCEEEEcCCchhHHHHHHHHHhcCCCCCeEEEEeeCCCCccchHhHHHH
Q 019410 246 KFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDYTQGL 295 (341)
Q Consensus 246 ~~D~Ivv~vGtGGt~aGl~~~~k~~~~~~rVigVe~~g~~~~~~~~i~~l 295 (341)
.+|.||+.+|.-+.+.|+..++- ...||||.+..........+..+
T Consensus 55 ~~~viIa~AG~~a~Lpgvva~~t----~~PVIgvP~~~~~~~g~d~l~S~ 100 (150)
T PF00731_consen 55 GADVIIAVAGMSAALPGVVASLT----TLPVIGVPVSSGYLGGLDSLLSI 100 (150)
T ss_dssp TESEEEEEEESS--HHHHHHHHS----SS-EEEEEE-STTTTTHHHHHHH
T ss_pred CCEEEEEECCCcccchhhheecc----CCCEEEeecCcccccCcccHHHH
Confidence 47899999998888999998875 46899998776544343433333
No 241
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=32.89 E-value=65 Score=32.33 Aligned_cols=36 Identities=31% Similarity=0.200 Sum_probs=29.1
Q ss_pred CCCeEEEeCC--------------CcchHHHHHHHHHHHcCCeEEEEEcC
Q 019410 120 GADCIITIGG--------------IQSNHCRAAAVAAKYLNLDCYLILRT 155 (341)
Q Consensus 120 g~~~vVt~G~--------------s~GNhg~AlA~aa~~~Gl~~~ivvp~ 155 (341)
|...+||.|+ |+|-.|.++|..+...|.+++++...
T Consensus 185 ~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~ 234 (390)
T TIGR00521 185 GKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITGP 234 (390)
T ss_pred CceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeCCC
Confidence 4556777664 56789999999999999999988754
No 242
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=32.76 E-value=3.6e+02 Score=24.09 Aligned_cols=57 Identities=16% Similarity=0.071 Sum_probs=34.5
Q ss_pred CCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECC
Q 019410 120 GADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISK 185 (341)
Q Consensus 120 g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~ 185 (341)
|.+.+|| |+ +|--|.++|......|.+++++-+.... .......++..|.++..+.-
T Consensus 10 ~k~vlIt-Ga-~g~iG~~ia~~l~~~G~~V~~~~r~~~~-------~~~~~~~i~~~~~~~~~~~~ 66 (255)
T PRK07523 10 GRRALVT-GS-SQGIGYALAEGLAQAGAEVILNGRDPAK-------LAAAAESLKGQGLSAHALAF 66 (255)
T ss_pred CCEEEEE-CC-cchHHHHHHHHHHHcCCEEEEEeCCHHH-------HHHHHHHHHhcCceEEEEEc
Confidence 3344554 54 4789999999999999987665443211 01123345556777766643
No 243
>PRK07814 short chain dehydrogenase; Provisional
Probab=32.73 E-value=3.2e+02 Score=24.72 Aligned_cols=32 Identities=25% Similarity=0.227 Sum_probs=23.1
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcC
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 155 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~ 155 (341)
..+|| |+ +|--|.++|......|++++++.+.
T Consensus 12 ~vlIt-Ga-sggIG~~~a~~l~~~G~~Vi~~~r~ 43 (263)
T PRK07814 12 VAVVT-GA-GRGLGAAIALAFAEAGADVLIAART 43 (263)
T ss_pred EEEEE-CC-CChHHHHHHHHHHHCCCEEEEEeCC
Confidence 34454 54 4678999998888899987776553
No 244
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=32.70 E-value=3.5e+02 Score=23.93 Aligned_cols=54 Identities=9% Similarity=-0.020 Sum_probs=33.6
Q ss_pred eEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEEC
Q 019410 123 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 184 (341)
Q Consensus 123 ~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~ 184 (341)
.+|| |+ +|.-|+++|......|.+.+++....... ....+..++..|++++...
T Consensus 6 ~lVt-G~-s~giG~~~a~~l~~~G~~vv~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 59 (246)
T PRK12938 6 AYVT-GG-MGGIGTSICQRLHKDGFKVVAGCGPNSPR------RVKWLEDQKALGFDFIASE 59 (246)
T ss_pred EEEE-CC-CChHHHHHHHHHHHcCCEEEEEcCCChHH------HHHHHHHHHhcCCcEEEEE
Confidence 3454 44 57999999999999999876655432210 0112444456688876554
No 245
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=32.69 E-value=2e+02 Score=26.42 Aligned_cols=48 Identities=15% Similarity=0.058 Sum_probs=33.1
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEE
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIE 181 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~ 181 (341)
++|+..|+ .|..|.+++..|+.+|.+.+.+.+. ..+...++.+|+...
T Consensus 134 ~~vli~g~-~~~~g~~~~~~a~~~g~~v~~~~~~-----------~~~~~~~~~~g~~~~ 181 (305)
T cd08270 134 RRVLVTGA-SGGVGRFAVQLAALAGAHVVAVVGS-----------PARAEGLRELGAAEV 181 (305)
T ss_pred CEEEEECC-CcHHHHHHHHHHHHcCCEEEEEeCC-----------HHHHHHHHHcCCcEE
Confidence 55655554 4789999999999999985555432 124667777998633
No 246
>PRK08017 oxidoreductase; Provisional
Probab=32.58 E-value=1.6e+02 Score=26.31 Aligned_cols=50 Identities=16% Similarity=0.104 Sum_probs=33.1
Q ss_pred eEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEEC
Q 019410 123 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 184 (341)
Q Consensus 123 ~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~ 184 (341)
+++..|+ +|--|.++|....+.|.+++++.++. .+++.++..|++.+.++
T Consensus 4 ~vlVtGa-sg~IG~~la~~l~~~g~~v~~~~r~~-----------~~~~~~~~~~~~~~~~D 53 (256)
T PRK08017 4 SVLITGC-SSGIGLEAALELKRRGYRVLAACRKP-----------DDVARMNSLGFTGILLD 53 (256)
T ss_pred EEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCH-----------HHhHHHHhCCCeEEEee
Confidence 3443454 57899999999999999877665432 13444556777766654
No 247
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=32.51 E-value=3.7e+02 Score=26.02 Aligned_cols=45 Identities=16% Similarity=0.296 Sum_probs=24.4
Q ss_pred HHHHHHHHhcCCCCCCC--CEEEEcCCchhHH--HHHHHHHhcCCCCCeEEEEee
Q 019410 231 IKEIEQQLQTGTGGVKF--DDIVVACGSGGTI--AGLSLGSWLGTLKAKVHAFSV 281 (341)
Q Consensus 231 a~EI~~Ql~~~~~g~~~--D~Ivv~vGtGGt~--aGl~~~~k~~~~~~rVigVe~ 281 (341)
..++.+++.+ ..+ +.+|+++|+|..+ ++.+..... ..++++.|.+
T Consensus 67 v~~~~~~~~~----~~~~r~d~IIavGGGsv~D~aK~iA~~~~--~~~p~i~VPT 115 (344)
T TIGR01357 67 VQRLYDQLLE----AGLDRSSTIIALGGGVVGDLAGFVAATYM--RGIRFIQVPT 115 (344)
T ss_pred HHHHHHHHHH----cCCCCCCEEEEEcChHHHHHHHHHHHHHc--cCCCEEEecC
Confidence 4455555543 122 2467888887763 333332222 3457777775
No 248
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=32.26 E-value=57 Score=32.77 Aligned_cols=31 Identities=29% Similarity=0.386 Sum_probs=21.7
Q ss_pred EEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCC
Q 019410 124 IITIGGIQSNHCRAAAVAAKYLNLDCYLILRTS 156 (341)
Q Consensus 124 vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~ 156 (341)
||.+|| |=.|.+.|.+|++.|.++.++=+..
T Consensus 2 VVVvGg--G~aG~~AAi~AAr~G~~VlLiE~~~ 32 (428)
T PF12831_consen 2 VVVVGG--GPAGVAAAIAAARAGAKVLLIEKGG 32 (428)
T ss_dssp EEEE----SHHHHHHHHHHHHTTS-EEEE-SSS
T ss_pred EEEECc--cHHHHHHHHHHHHCCCEEEEEECCc
Confidence 333565 6789999999999999999986543
No 249
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=32.24 E-value=1.1e+02 Score=29.60 Aligned_cols=49 Identities=14% Similarity=0.135 Sum_probs=33.6
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEE
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 182 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~ 182 (341)
++|+..|+ |--|..++..|+.+|.+.++++... ..++.+++.+||+.++
T Consensus 193 ~~VlV~G~--G~vG~~a~~lak~~G~~~Vi~~~~~----------~~r~~~a~~~Ga~~~i 241 (371)
T cd08281 193 QSVAVVGL--GGVGLSALLGAVAAGASQVVAVDLN----------EDKLALARELGATATV 241 (371)
T ss_pred CEEEEECC--CHHHHHHHHHHHHcCCCcEEEEcCC----------HHHHHHHHHcCCceEe
Confidence 45554553 7899999999999999644544322 1357788899996543
No 250
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=32.17 E-value=1.1e+02 Score=29.65 Aligned_cols=49 Identities=8% Similarity=-0.027 Sum_probs=33.2
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHH-hCCCEEEE
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVER-LVGAHIEL 182 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~-~~GAeV~~ 182 (341)
++|+..|+ +|--|.+++..|+.+|.+.+++.+. ..+...++ .+|++-++
T Consensus 160 ~~VlV~Ga-aG~vG~~aiqlAk~~G~~Vi~~~~~-----------~~k~~~~~~~lGa~~vi 209 (348)
T PLN03154 160 DSVFVSAA-SGAVGQLVGQLAKLHGCYVVGSAGS-----------SQKVDLLKNKLGFDEAF 209 (348)
T ss_pred CEEEEecC-ccHHHHHHHHHHHHcCCEEEEEcCC-----------HHHHHHHHHhcCCCEEE
Confidence 55655554 4788999999999999985544322 12566676 79997544
No 251
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=32.15 E-value=1.4e+02 Score=28.49 Aligned_cols=49 Identities=22% Similarity=0.273 Sum_probs=35.1
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEE
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 182 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~ 182 (341)
++|+. +|+ |..|.+++..|+.+|.+.++++.... .+...++.+|++.++
T Consensus 176 ~~vlI-~g~-g~vG~~~~~~a~~~G~~~v~~~~~~~----------~~~~~~~~~g~~~v~ 224 (350)
T cd08256 176 DVVVL-AGA-GPLGLGMIGAARLKNPKKLIVLDLKD----------ERLALARKFGADVVL 224 (350)
T ss_pred CEEEE-ECC-CHHHHHHHHHHHHcCCcEEEEEcCCH----------HHHHHHHHcCCcEEe
Confidence 55555 344 88999999999999998776665432 246777889986543
No 252
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=32.04 E-value=1.7e+02 Score=26.15 Aligned_cols=44 Identities=9% Similarity=-0.110 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHc---C----CCeEEEeCCCcchHHHHHHHHHHHcCCeEEEE
Q 019410 107 RKLEFLMADAVAQ---G----ADCIITIGGIQSNHCRAAAVAAKYLNLDCYLI 152 (341)
Q Consensus 107 Rkl~~ll~~A~~~---g----~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~iv 152 (341)
|+..+.++.+.+. + .++++..|. ||.|..+|.....+|.+++++
T Consensus 7 ~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~--G~vG~~~A~~L~~~G~~Vvv~ 57 (200)
T cd01075 7 YGVFLGMKAAAEHLLGTDSLEGKTVAVQGL--GKVGYKLAEHLLEEGAKLIVA 57 (200)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCEEEEECC--CHHHHHHHHHHHHCCCEEEEE
Confidence 5666666666544 2 145665664 799999999999999987743
No 253
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=32.04 E-value=3.3e+02 Score=24.62 Aligned_cols=54 Identities=17% Similarity=-0.012 Sum_probs=32.1
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEEC
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 184 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~ 184 (341)
..+|| |+ ++.-|.++|......|.+++++-+.... ...-...++..|++++.+.
T Consensus 12 ~~lIt-Ga-~~~iG~~ia~~l~~~G~~vv~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 65 (265)
T PRK07097 12 IALIT-GA-SYGIGFAIAKAYAKAGATIVFNDINQEL-------VDKGLAAYRELGIEAHGYV 65 (265)
T ss_pred EEEEe-CC-CchHHHHHHHHHHHCCCeEEEEeCCHHH-------HHHHHHHHHhcCCceEEEE
Confidence 34555 44 4689999999999999987666332110 0111333445577766554
No 254
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=31.72 E-value=2.7e+02 Score=26.23 Aligned_cols=47 Identities=13% Similarity=0.140 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHc-CC----CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcC
Q 019410 107 RKLEFLMADAVAQ-GA----DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 155 (341)
Q Consensus 107 Rkl~~ll~~A~~~-g~----~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~ 155 (341)
|+..+.+..+.+. +. .+|+..|- ||-|+.+|.....+|.+++-+.+.
T Consensus 19 ~Gv~~~~~~~~~~~~~~l~g~~vaIqGf--GnVG~~~a~~L~e~GakvvaVsD~ 70 (254)
T cd05313 19 YGLVYFVEEMLKDRNETLKGKRVAISGS--GNVAQYAAEKLLELGAKVVTLSDS 70 (254)
T ss_pred HHHHHHHHHHHHhcCCCcCCCEEEEECC--CHHHHHHHHHHHHCCCEEEEEECC
Confidence 5666666666543 22 45665663 899999999999999998888663
No 255
>PLN02740 Alcohol dehydrogenase-like
Probab=31.70 E-value=1.3e+02 Score=29.26 Aligned_cols=49 Identities=10% Similarity=-0.024 Sum_probs=34.0
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEE
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 182 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~ 182 (341)
++|+..|+ |--|.+++..|+.+|.+-++.+... ..+++.++.+||+.++
T Consensus 200 ~~VlV~G~--G~vG~~a~q~ak~~G~~~Vi~~~~~----------~~r~~~a~~~Ga~~~i 248 (381)
T PLN02740 200 SSVAIFGL--GAVGLAVAEGARARGASKIIGVDIN----------PEKFEKGKEMGITDFI 248 (381)
T ss_pred CEEEEECC--CHHHHHHHHHHHHCCCCcEEEEcCC----------hHHHHHHHHcCCcEEE
Confidence 45555653 7899999999999998544444322 1257788899997543
No 256
>PRK11440 putative hydrolase; Provisional
Probab=31.70 E-value=1.2e+02 Score=26.57 Aligned_cols=53 Identities=17% Similarity=0.117 Sum_probs=36.1
Q ss_pred CchHhHHHHHHHHHHHHcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCC
Q 019410 102 SGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSK 157 (341)
Q Consensus 102 ggnK~Rkl~~ll~~A~~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~ 157 (341)
++|..-.+..++ ++.|.++||.+|-....--.+.|.-|..+|++++++.+...
T Consensus 105 saF~~T~L~~~L---~~~gi~~lii~Gv~T~~CV~~Ta~~A~~~gy~v~vv~Da~a 157 (188)
T PRK11440 105 GAFYGTDLELQL---RRRGIDTIVLCGISTNIGVESTARNAWELGFNLVIAEDACS 157 (188)
T ss_pred CCCCCCCHHHHH---HHCCCCEEEEeeechhHHHHHHHHHHHHCCCEEEEechhhc
Confidence 333333344444 35788999987654444456889999999999999877544
No 257
>PRK09620 hypothetical protein; Provisional
Probab=31.67 E-value=76 Score=29.28 Aligned_cols=25 Identities=8% Similarity=-0.097 Sum_probs=22.3
Q ss_pred CcchHHHHHHHHHHHcCCeEEEEEc
Q 019410 130 IQSNHCRAAAVAAKYLNLDCYLILR 154 (341)
Q Consensus 130 s~GNhg~AlA~aa~~~Gl~~~ivvp 154 (341)
|+|=.|..+|.++...|.+++++..
T Consensus 27 SSGfiGs~LA~~L~~~Ga~V~li~g 51 (229)
T PRK09620 27 AKGTIGRIIAEELISKGAHVIYLHG 51 (229)
T ss_pred CcCHHHHHHHHHHHHCCCeEEEEeC
Confidence 6689999999999999999888864
No 258
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=31.53 E-value=2e+02 Score=28.06 Aligned_cols=46 Identities=17% Similarity=0.124 Sum_probs=25.5
Q ss_pred HHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHh----------------cCCCCCeEEEEeeC
Q 019410 231 IKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSW----------------LGTLKAKVHAFSVC 282 (341)
Q Consensus 231 a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k----------------~~~~~~rVigVe~~ 282 (341)
..++.+++.+ .++| +|+++|+|..+ =++++.. ...+..++|+|..-
T Consensus 72 v~~~~~~~~~----~~~D-~IIavGGGSvi-D~aK~ia~~~~~~~~~~~~~~~~~~~~~~P~i~VPTt 133 (357)
T cd08181 72 IMEAVEIAKK----FNAD-FVIGIGGGSPL-DAAKAIAVLIKNPDLKVELYFRSKYLKALPVVAIPTT 133 (357)
T ss_pred HHHHHHHHHh----cCCC-EEEEeCCchHH-HHHHHHHHHHhCCCcHHHHhcccccCCCCCEEEEeCC
Confidence 4556666653 3465 46678887653 2333221 12345788888854
No 259
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=31.48 E-value=38 Score=31.57 Aligned_cols=36 Identities=22% Similarity=0.284 Sum_probs=22.7
Q ss_pred CCEEEEcCCchhHHHHHHHHHhcCCCCCeEEEEeeCCCC
Q 019410 247 FDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDP 285 (341)
Q Consensus 247 ~D~Ivv~vGtGGt~aGl~~~~k~~~~~~rVigVe~~g~~ 285 (341)
+|+|||..|+||..+.- .+.+ .++.+|.-+|.-+..
T Consensus 1 yD~iIVGsG~~G~v~A~--rLs~-~~~~~VlvlEaG~~~ 36 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVAS--RLSE-AGNKKVLVLEAGPRY 36 (296)
T ss_dssp EEEEEES-SHHHHHHHH--HHTT-STTS-EEEEESSBSC
T ss_pred CCEEEECcCHHHHHHHH--HHhh-CCCCcEEEEEccccC
Confidence 58999999988876322 2222 356789988877653
No 260
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=31.44 E-value=5.9e+02 Score=26.14 Aligned_cols=23 Identities=9% Similarity=-0.065 Sum_probs=20.4
Q ss_pred chHHHHHHHHHHHcCCeEEEEEc
Q 019410 132 SNHCRAAAVAAKYLNLDCYLILR 154 (341)
Q Consensus 132 GNhg~AlA~aa~~~Gl~~~ivvp 154 (341)
|+.|.++|..-...|++++++-+
T Consensus 8 G~MG~~mA~nL~~~G~~V~v~dr 30 (467)
T TIGR00873 8 AVMGSNLALNMADHGFTVSVYNR 30 (467)
T ss_pred HHHHHHHHHHHHhcCCeEEEEeC
Confidence 79999999999999999888754
No 261
>PRK07035 short chain dehydrogenase; Provisional
Probab=31.41 E-value=3.5e+02 Score=24.13 Aligned_cols=70 Identities=11% Similarity=0.113 Sum_probs=0.0
Q ss_pred HHHHHhCCCEEEEECCccccccCcHHHHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCE
Q 019410 170 LLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDD 249 (341)
Q Consensus 170 ~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~ 249 (341)
.+.+...|++|+.+.+.. +..+.+.+++.+.+....+++..-.+... ...+..++.++++ .+|.
T Consensus 25 ~~~l~~~G~~Vi~~~r~~-------~~~~~~~~~~~~~~~~~~~~~~D~~~~~~---~~~~~~~~~~~~~------~id~ 88 (252)
T PRK07035 25 AKLLAQQGAHVIVSSRKL-------DGCQAVADAIVAAGGKAEALACHIGEMEQ---IDALFAHIRERHG------RLDI 88 (252)
T ss_pred HHHHHHCCCEEEEEeCCH-------HHHHHHHHHHHhcCCeEEEEEcCCCCHHH---HHHHHHHHHHHcC------CCCE
Q ss_pred EEEcCC
Q 019410 250 IVVACG 255 (341)
Q Consensus 250 Ivv~vG 255 (341)
||..+|
T Consensus 89 li~~ag 94 (252)
T PRK07035 89 LVNNAA 94 (252)
T ss_pred EEECCC
No 262
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=31.28 E-value=1.6e+02 Score=28.03 Aligned_cols=50 Identities=18% Similarity=0.126 Sum_probs=34.1
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEE
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELI 183 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v 183 (341)
++|+..|+ |..|.+++..|+.+|++.++++... ..+..+++.+|++.++.
T Consensus 174 ~~vlI~g~--g~vG~~a~q~a~~~G~~~v~~~~~~----------~~~~~~~~~~ga~~~i~ 223 (351)
T cd08233 174 DTALVLGA--GPIGLLTILALKAAGASKIIVSEPS----------EARRELAEELGATIVLD 223 (351)
T ss_pred CEEEEECC--CHHHHHHHHHHHHcCCCEEEEECCC----------HHHHHHHHHhCCCEEEC
Confidence 45555553 7899999999999999655555322 12566777899976543
No 263
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=31.11 E-value=2.3e+02 Score=28.22 Aligned_cols=14 Identities=36% Similarity=0.662 Sum_probs=9.1
Q ss_pred CCCEEEEcCCchhHH
Q 019410 246 KFDDIVVACGSGGTI 260 (341)
Q Consensus 246 ~~D~Ivv~vGtGGt~ 260 (341)
++|. |+++|+|..+
T Consensus 106 ~~D~-IiavGGGS~i 119 (395)
T PRK15454 106 GCDG-VIAFGGGSVL 119 (395)
T ss_pred CcCE-EEEeCChHHH
Confidence 4654 6678887653
No 264
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=31.10 E-value=3.6e+02 Score=26.31 Aligned_cols=17 Identities=6% Similarity=0.104 Sum_probs=14.0
Q ss_pred hhHHHHHhCCCEEEEEC
Q 019410 168 GNLLVERLVGAHIELIS 184 (341)
Q Consensus 168 gn~~~~~~~GAeV~~v~ 184 (341)
+-....+.+|++++.++
T Consensus 132 ~~~~~~~~~g~~~v~v~ 148 (396)
T PRK09257 132 NHRAIFEAAGLEVKTYP 148 (396)
T ss_pred cHHHHHHHcCCcEEEEe
Confidence 35778889999999886
No 265
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=31.10 E-value=74 Score=32.54 Aligned_cols=38 Identities=16% Similarity=-0.074 Sum_probs=27.2
Q ss_pred CEEEEcCCchhHHHHHHHHHhcCCCCCeEEEEeeCCCC
Q 019410 248 DDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDP 285 (341)
Q Consensus 248 D~Ivv~vGtGGt~aGl~~~~k~~~~~~rVigVe~~g~~ 285 (341)
-.++|++|+|-+..-.+.+.+..+...+|++||.....
T Consensus 189 vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A 226 (448)
T PF05185_consen 189 VVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNA 226 (448)
T ss_dssp EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHH
T ss_pred EEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhH
Confidence 46778888888876666666656678899999976543
No 266
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=31.08 E-value=80 Score=27.26 Aligned_cols=33 Identities=12% Similarity=0.137 Sum_probs=27.4
Q ss_pred EEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCC
Q 019410 124 IITIGGIQSNHCRAAAVAAKYLNLDCYLILRTS 156 (341)
Q Consensus 124 vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~ 156 (341)
|.-.|-..+|.+++++.+++++|+.++++.|..
T Consensus 5 i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~ 37 (158)
T PF00185_consen 5 IAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEG 37 (158)
T ss_dssp EEEESSTTSHHHHHHHHHHHHTTSEEEEESSGG
T ss_pred EEEECCCCChHHHHHHHHHHHcCCEEEEECCCc
Confidence 444554458999999999999999999998876
No 267
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=30.95 E-value=1.4e+02 Score=29.31 Aligned_cols=50 Identities=20% Similarity=0.078 Sum_probs=33.5
Q ss_pred CCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEE
Q 019410 121 ADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 182 (341)
Q Consensus 121 ~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~ 182 (341)
.++|+..|+ |--|.+++..|+.+|.+.+++.+... .+...++.+||+.++
T Consensus 179 g~~VlV~G~--G~vG~~avq~Ak~~Ga~Vi~~~~~~~----------~~~~~a~~lGa~~~i 228 (375)
T PLN02178 179 GKRLGVNGL--GGLGHIAVKIGKAFGLRVTVISRSSE----------KEREAIDRLGADSFL 228 (375)
T ss_pred CCEEEEEcc--cHHHHHHHHHHHHcCCeEEEEeCChH----------HhHHHHHhCCCcEEE
Confidence 355655553 78999999999999998555433211 125667889997543
No 268
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=30.93 E-value=3.1e+02 Score=27.87 Aligned_cols=75 Identities=19% Similarity=0.166 Sum_probs=39.3
Q ss_pred HHHHHHHHHcCCe-EEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCccccccCcHHHHHHHHHHHHHhCCC-cEE
Q 019410 136 RAAAVAAKYLNLD-CYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRR-PYV 213 (341)
Q Consensus 136 ~AlA~aa~~~Gl~-~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~a~~l~~~g~~-~~~ 213 (341)
.|+-..++.+==+ -+|++.. |.-.+-++.++.+|++++.++.++ +....+.+++ .+++...+ .|+
T Consensus 166 ~al~l~~~~l~~pGd~v~vE~--------PtY~~~~~~~~~~g~~~~~vp~d~--~G~~~e~le~---~~~~~~~k~~y~ 232 (459)
T COG1167 166 QALDLLLRLLLDPGDTVLVED--------PTYPGALQALEALGARVIPVPVDE--DGIDPEALEE---ALAQWKPKAVYV 232 (459)
T ss_pred HHHHHHHHHhCCCCCEEEEcC--------CCcHHHHHHHHHcCCcEEecCCCC--CCCCHHHHHH---HHhhcCCcEEEE
Confidence 4555666654433 2344432 222456889999999999997542 1112222233 22321223 455
Q ss_pred eCCCCCchhHH
Q 019410 214 IPVGGSNSIGT 224 (341)
Q Consensus 214 ip~g~~n~~~~ 224 (341)
+|. +.||.+.
T Consensus 233 ~P~-~qNPtG~ 242 (459)
T COG1167 233 TPT-FQNPTGV 242 (459)
T ss_pred CCC-CCCCCCC
Confidence 664 5677763
No 269
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=30.87 E-value=1.8e+02 Score=26.61 Aligned_cols=55 Identities=15% Similarity=0.075 Sum_probs=33.9
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECC
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISK 185 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~ 185 (341)
..+|| |+ +|.-|.++|......|.+++++-+..... ......++..|.++..+.-
T Consensus 12 ~vlVt-Ga-s~giG~~ia~~l~~~G~~V~~~~r~~~~~-------~~~~~~~~~~~~~~~~~~~ 66 (278)
T PRK08277 12 VAVIT-GG-GGVLGGAMAKELARAGAKVAILDRNQEKA-------EAVVAEIKAAGGEALAVKA 66 (278)
T ss_pred EEEEe-CC-CchHHHHHHHHHHHCCCEEEEEeCCHHHH-------HHHHHHHHhcCCeEEEEEC
Confidence 34454 54 47899999999999999877776532110 1113334456777766543
No 270
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=30.65 E-value=2.8e+02 Score=25.22 Aligned_cols=92 Identities=20% Similarity=0.206 Sum_probs=55.6
Q ss_pred HHHHHHcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCccccccC
Q 019410 113 MADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIG 192 (341)
Q Consensus 113 l~~A~~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~ 192 (341)
+++|.+.|.+=+|+-+ .-..++.+|++.|+. ++|.... ...+.....+|++++.+=...- .+
T Consensus 73 a~~a~~aGA~FivsP~-----~~~~v~~~~~~~~i~---~iPG~~T--------ptEi~~A~~~Ga~~vKlFPA~~--~G 134 (204)
T TIGR01182 73 LRQAVDAGAQFIVSPG-----LTPELAKHAQDHGIP---IIPGVAT--------PSEIMLALELGITALKLFPAEV--SG 134 (204)
T ss_pred HHHHHHcCCCEEECCC-----CCHHHHHHHHHcCCc---EECCCCC--------HHHHHHHHHCCCCEEEECCchh--cC
Confidence 5667788999888643 345888999999984 5666542 1247777889999876643221 01
Q ss_pred cHHHHHHHHHHHHHhCCCcEEeCCCCCchhHHHH
Q 019410 193 SVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWG 226 (341)
Q Consensus 193 ~~~~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G 226 (341)
-..++.. +..--+..-++|.||-++.+...
T Consensus 135 G~~yika----l~~plp~i~~~ptGGV~~~N~~~ 164 (204)
T TIGR01182 135 GVKMLKA----LAGPFPQVRFCPTGGINLANVRD 164 (204)
T ss_pred CHHHHHH----HhccCCCCcEEecCCCCHHHHHH
Confidence 1234333 32211344567888877765433
No 271
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=30.57 E-value=79 Score=27.61 Aligned_cols=39 Identities=33% Similarity=0.463 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEc
Q 019410 108 KLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 154 (341)
Q Consensus 108 kl~~ll~~A~~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp 154 (341)
-+...+.++.+.|++.|| || . .+.-.|+++|++++++-+
T Consensus 113 e~~~~i~~~~~~G~~viV--Gg---~---~~~~~A~~~gl~~v~i~s 151 (176)
T PF06506_consen 113 EIEAAIKQAKAEGVDVIV--GG---G---VVCRLARKLGLPGVLIES 151 (176)
T ss_dssp HHHHHHHHHHHTT--EEE--ES---H---HHHHHHHHTTSEEEESS-
T ss_pred HHHHHHHHHHHcCCcEEE--CC---H---HHHHHHHHcCCcEEEEEe
Confidence 467778899999999888 33 2 235677999999877754
No 272
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=30.45 E-value=1e+02 Score=26.19 Aligned_cols=29 Identities=17% Similarity=0.090 Sum_probs=25.3
Q ss_pred CCcchHHHHHHHHHHHcCCeEEEEEcCCC
Q 019410 129 GIQSNHCRAAAVAAKYLNLDCYLILRTSK 157 (341)
Q Consensus 129 ~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~ 157 (341)
|.+|+.|..++......|.++++++++..
T Consensus 5 GatG~vG~~l~~~L~~~~~~V~~~~R~~~ 33 (183)
T PF13460_consen 5 GATGFVGRALAKQLLRRGHEVTALVRSPS 33 (183)
T ss_dssp TTTSHHHHHHHHHHHHTTSEEEEEESSGG
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEecCch
Confidence 34589999999999999999999998643
No 273
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=30.27 E-value=4.6e+02 Score=24.46 Aligned_cols=15 Identities=20% Similarity=0.169 Sum_probs=8.0
Q ss_pred HHHHHhCCCEEEEEC
Q 019410 170 LLVERLVGAHIELIS 184 (341)
Q Consensus 170 ~~~~~~~GAeV~~v~ 184 (341)
+..+...|+++++|.
T Consensus 150 ~~~I~~s~~dil~Vg 164 (243)
T PRK03692 150 FERIHASGAKIVTVA 164 (243)
T ss_pred HHHHHhcCCCEEEEE
Confidence 444555555555554
No 274
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=30.26 E-value=1.5e+02 Score=28.17 Aligned_cols=48 Identities=13% Similarity=0.076 Sum_probs=33.6
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEE
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIE 181 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~ 181 (341)
++|+..|+ |..|.+++..|+.+|.+.++.+.... .+..+.+.+|++.+
T Consensus 168 ~~vlI~g~--g~iG~~~~~lak~~G~~~v~~~~~~~----------~~~~~~~~~g~~~~ 215 (351)
T cd08285 168 DTVAVFGI--GPVGLMAVAGARLRGAGRIIAVGSRP----------NRVELAKEYGATDI 215 (351)
T ss_pred CEEEEECC--CHHHHHHHHHHHHcCCCeEEEEeCCH----------HHHHHHHHcCCceE
Confidence 45554553 78999999999999997665554332 24677788998644
No 275
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=30.22 E-value=4.1e+02 Score=23.87 Aligned_cols=55 Identities=18% Similarity=0.199 Sum_probs=34.8
Q ss_pred CCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEEC
Q 019410 120 GADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 184 (341)
Q Consensus 120 g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~ 184 (341)
+...+|| |+ +|.-|.++|..-...|.+++++.+.... ......+...|.++..+.
T Consensus 15 ~k~vlIt-Ga-s~gIG~~ia~~l~~~G~~v~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 69 (258)
T PRK06935 15 GKVAIVT-GG-NTGLGQGYAVALAKAGADIIITTHGTNW--------DETRRLIEKEGRKVTFVQ 69 (258)
T ss_pred CCEEEEe-CC-CchHHHHHHHHHHHCCCEEEEEeCCcHH--------HHHHHHHHhcCCceEEEE
Confidence 3344555 54 4789999999999999998888765210 111334455676766554
No 276
>PRK06701 short chain dehydrogenase; Provisional
Probab=30.18 E-value=3.5e+02 Score=25.23 Aligned_cols=32 Identities=28% Similarity=0.177 Sum_probs=23.8
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcC
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 155 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~ 155 (341)
..+|| | .+|--|.++|....+.|.+++++.+.
T Consensus 48 ~iLIt-G-asggIG~~la~~l~~~G~~V~l~~r~ 79 (290)
T PRK06701 48 VALIT-G-GDSGIGRAVAVLFAKEGADIAIVYLD 79 (290)
T ss_pred EEEEe-C-CCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 34554 4 34788999999999999988777654
No 277
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=30.10 E-value=3.8e+02 Score=23.80 Aligned_cols=53 Identities=8% Similarity=-0.044 Sum_probs=32.8
Q ss_pred EEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEEC
Q 019410 124 IITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 184 (341)
Q Consensus 124 vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~ 184 (341)
++..|+ +|--|.++|....+.|.+.+++-+.... .....+.++..|.++..+.
T Consensus 3 ~lItG~-sg~iG~~la~~l~~~G~~v~~~~r~~~~-------~~~~~~~l~~~~~~~~~~~ 55 (254)
T TIGR02415 3 ALVTGG-AQGIGKGIAERLAKDGFAVAVADLNEET-------AKETAKEINQAGGKAVAYK 55 (254)
T ss_pred EEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHH-------HHHHHHHHHhcCCeEEEEE
Confidence 333354 4789999999999999987666543211 0112344556677776654
No 278
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=30.07 E-value=2.5e+02 Score=27.55 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=14.6
Q ss_pred HHHHHHHHhcCCCCCCCCEEEEcCCchhH
Q 019410 231 IKEIEQQLQTGTGGVKFDDIVVACGSGGT 259 (341)
Q Consensus 231 a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt 259 (341)
..|+.++.++ .++|. |+++|+|..
T Consensus 70 v~~~~~~~~~----~~~d~-IIaiGGGSv 93 (370)
T cd08192 70 VEAGLAAYRA----GGCDG-VIAFGGGSA 93 (370)
T ss_pred HHHHHHHHHh----cCCCE-EEEeCCchH
Confidence 4555565553 34665 667888765
No 279
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=30.02 E-value=2.2e+02 Score=25.46 Aligned_cols=48 Identities=21% Similarity=0.041 Sum_probs=30.7
Q ss_pred cchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEEC
Q 019410 131 QSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 184 (341)
Q Consensus 131 ~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~ 184 (341)
++.-|.++|....+.|.++++.-+..... + ..-..+.+.+|.+++.++
T Consensus 5 s~GiG~aia~~l~~~Ga~V~~~~~~~~~~-~-----~~~~~l~~~~~~~~~~~D 52 (241)
T PF13561_consen 5 SSGIGRAIARALAEEGANVILTDRNEEKL-A-----DALEELAKEYGAEVIQCD 52 (241)
T ss_dssp TSHHHHHHHHHHHHTTEEEEEEESSHHHH-H-----HHHHHHHHHTTSEEEESC
T ss_pred CCChHHHHHHHHHHCCCEEEEEeCChHHH-H-----HHHHHHHHHcCCceEeec
Confidence 46788999999999999888876543210 0 011344556788875554
No 280
>PRK07109 short chain dehydrogenase; Provisional
Probab=30.01 E-value=3.2e+02 Score=26.17 Aligned_cols=72 Identities=15% Similarity=0.117 Sum_probs=42.2
Q ss_pred HHHHHhCCCEEEEECCccccccCcHHHHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCE
Q 019410 170 LLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDD 249 (341)
Q Consensus 170 ~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~ 249 (341)
.+.+...|++|+.+.+.. +..+++.+++...+.+..+++.+-.++..+ ..+..++.+++ +.+|.
T Consensus 25 a~~la~~G~~Vvl~~R~~-------~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v---~~~~~~~~~~~------g~iD~ 88 (334)
T PRK07109 25 ARAFARRGAKVVLLARGE-------EGLEALAAEIRAAGGEALAVVADVADAEAV---QAAADRAEEEL------GPIDT 88 (334)
T ss_pred HHHHHHCCCEEEEEECCH-------HHHHHHHHHHHHcCCcEEEEEecCCCHHHH---HHHHHHHHHHC------CCCCE
Confidence 344455799999887532 122344555554444455666555555443 23455565554 36999
Q ss_pred EEEcCCch
Q 019410 250 IVVACGSG 257 (341)
Q Consensus 250 Ivv~vGtG 257 (341)
+|..+|.+
T Consensus 89 lInnAg~~ 96 (334)
T PRK07109 89 WVNNAMVT 96 (334)
T ss_pred EEECCCcC
Confidence 99999864
No 281
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=29.92 E-value=3.9e+02 Score=23.59 Aligned_cols=32 Identities=16% Similarity=0.057 Sum_probs=24.1
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcC
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 155 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~ 155 (341)
..+|| |+ +|.-|.++|..-...|.+++++.+.
T Consensus 5 ~ilIt-Ga-s~~iG~~la~~l~~~g~~v~~~~r~ 36 (250)
T TIGR03206 5 TAIVT-GG-GGGIGGATCRRFAEEGAKVAVFDLN 36 (250)
T ss_pred EEEEe-CC-CChHHHHHHHHHHHCCCEEEEecCC
Confidence 33454 44 4799999999999999988777653
No 282
>cd00431 cysteine_hydrolases Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It also contains isochorismatase, an enzyme that catalyzes the conversion of isochorismate to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of the vinyl ether bond, and other related enzymes with unknown function.
Probab=29.85 E-value=1.5e+02 Score=24.90 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=29.2
Q ss_pred HHcCCCeEEEeCCCcchHH-HHHHHHHHHcCCeEEEEEcCCC
Q 019410 117 VAQGADCIITIGGIQSNHC-RAAAVAAKYLNLDCYLILRTSK 157 (341)
Q Consensus 117 ~~~g~~~vVt~G~s~GNhg-~AlA~aa~~~Gl~~~ivvp~~~ 157 (341)
.+.|.++|+.+|-. .|.| .+.|..+..+|++++|+.+...
T Consensus 106 ~~~~i~~vil~G~~-t~~CV~~T~~~a~~~G~~v~vi~Da~~ 146 (161)
T cd00431 106 RERGIDTLVVCGIA-TDICVLATARDALDLGYRVIVVEDACA 146 (161)
T ss_pred HHCCCCEEEEEecC-cChhHHHHHHHHHHCCCEEEEehhhcc
Confidence 45688888877654 4555 5677888889999998876544
No 283
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=29.77 E-value=3.7e+02 Score=27.49 Aligned_cols=17 Identities=12% Similarity=0.077 Sum_probs=14.1
Q ss_pred hhHHHHHhCCCEEEEEC
Q 019410 168 GNLLVERLVGAHIELIS 184 (341)
Q Consensus 168 gn~~~~~~~GAeV~~v~ 184 (341)
.-.+.+...|++.++++
T Consensus 163 S~~kAi~~~G~~pv~Vd 179 (444)
T TIGR03531 163 SCIKAISTAGFEPRVIE 179 (444)
T ss_pred HHHHHHHHcCCeEEEee
Confidence 35778899999998887
No 284
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=29.63 E-value=2.8e+02 Score=25.64 Aligned_cols=48 Identities=10% Similarity=0.027 Sum_probs=33.1
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEE
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIE 181 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~ 181 (341)
++|+..|+ .|-.|.+++..|+.+|.+.+++.+.. .+...++.+|++-+
T Consensus 148 ~~vlI~g~-~g~vg~~~~~~a~~~g~~v~~~~~~~-----------~~~~~~~~~g~~~~ 195 (325)
T cd05280 148 GPVLVTGA-TGGVGSIAVAILAKLGYTVVALTGKE-----------EQADYLKSLGASEV 195 (325)
T ss_pred CEEEEECC-ccHHHHHHHHHHHHcCCEEEEEeCCH-----------HHHHHHHhcCCcEE
Confidence 45665554 47899999999999999955444321 14566778998544
No 285
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=29.49 E-value=1.7e+02 Score=28.82 Aligned_cols=46 Identities=17% Similarity=0.279 Sum_probs=30.9
Q ss_pred HHHHHhCCCEEEEECCccccccCcHHHHHHHHHHHHHhCCCcEEeCCCCC
Q 019410 170 LLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGS 219 (341)
Q Consensus 170 ~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~a~~l~~~g~~~~~ip~g~~ 219 (341)
....+.|||+|..++.+ +-+ ..-++.+.+.+.+..++.+++-.+.+
T Consensus 108 ~D~~~r~ga~V~~v~~~-~G~---~~~le~i~~~lsqh~p~~vfv~hgds 153 (385)
T KOG2862|consen 108 ADCARRYGAEVDVVEAD-IGQ---AVPLEEITEKLSQHKPKAVFVTHGDS 153 (385)
T ss_pred HHHHHhhCceeeEEecC-ccc---CccHHHHHHHHHhcCCceEEEEecCc
Confidence 67788999999999753 422 22346677777776556777765543
No 286
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=29.45 E-value=4.4e+02 Score=24.00 Aligned_cols=32 Identities=19% Similarity=0.078 Sum_probs=22.7
Q ss_pred CCeEEEeCC-CcchHHHHHHHHHHHcCCeEEEEE
Q 019410 121 ADCIITIGG-IQSNHCRAAAVAAKYLNLDCYLIL 153 (341)
Q Consensus 121 ~~~vVt~G~-s~GNhg~AlA~aa~~~Gl~~~ivv 153 (341)
...+|| |+ +++--|.++|....+.|.++++.-
T Consensus 7 k~vlIt-Gas~~~GIG~a~a~~l~~~G~~v~~~~ 39 (260)
T PRK06997 7 KRILIT-GLLSNRSIAYGIAKACKREGAELAFTY 39 (260)
T ss_pred cEEEEe-CCCCCCcHHHHHHHHHHHCCCeEEEEc
Confidence 334555 54 345678899999999999887753
No 287
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=29.31 E-value=1.5e+02 Score=27.15 Aligned_cols=49 Identities=24% Similarity=0.207 Sum_probs=34.2
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEE
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 182 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~ 182 (341)
++|+..|+ .|..|++++..|+.+|.+.+.+.+.. .+...++.+|++-++
T Consensus 144 ~~vlV~ga-~g~~g~~~~~~a~~~g~~v~~~~~~~-----------~~~~~~~~~g~~~~~ 192 (320)
T cd08243 144 DTLLIRGG-TSSVGLAALKLAKALGATVTATTRSP-----------ERAALLKELGADEVV 192 (320)
T ss_pred CEEEEEcC-CChHHHHHHHHHHHcCCEEEEEeCCH-----------HHHHHHHhcCCcEEE
Confidence 45665654 57899999999999999965554432 135666778986544
No 288
>PRK06128 oxidoreductase; Provisional
Probab=29.27 E-value=2.3e+02 Score=26.51 Aligned_cols=59 Identities=22% Similarity=0.176 Sum_probs=36.1
Q ss_pred CCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECC
Q 019410 120 GADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISK 185 (341)
Q Consensus 120 g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~ 185 (341)
|...+|| |+ +|--|.++|..-.+.|.++++........ . .......++..|.++..+.-
T Consensus 55 ~k~vlIT-Ga-s~gIG~~~a~~l~~~G~~V~i~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~ 113 (300)
T PRK06128 55 GRKALIT-GA-DSGIGRATAIAFAREGADIALNYLPEEEQ-D----AAEVVQLIQAEGRKAVALPG 113 (300)
T ss_pred CCEEEEe-cC-CCcHHHHHHHHHHHcCCEEEEEeCCcchH-H----HHHHHHHHHHcCCeEEEEec
Confidence 3344555 54 47899999999999999987764322110 0 01124455667888766653
No 289
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=29.26 E-value=2.8e+02 Score=27.35 Aligned_cols=24 Identities=25% Similarity=0.236 Sum_probs=14.0
Q ss_pred HHHHHHHHhcCCCCCCCCEEEEcCCchhH
Q 019410 231 IKEIEQQLQTGTGGVKFDDIVVACGSGGT 259 (341)
Q Consensus 231 a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt 259 (341)
..|+.+++.+ .++|. |+++|+|..
T Consensus 72 v~~~~~~~~~----~~~D~-IiavGGGS~ 95 (380)
T cd08185 72 VMEGAALARE----EGCDF-VVGLGGGSS 95 (380)
T ss_pred HHHHHHHHHH----cCCCE-EEEeCCccH
Confidence 3455555543 35665 667888765
No 290
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=29.25 E-value=1.8e+02 Score=28.22 Aligned_cols=49 Identities=18% Similarity=0.064 Sum_probs=32.0
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEE
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 182 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~ 182 (341)
++|+..|+ |.-|.+++..|+.+|.+.+++..... .+....+.+||+.++
T Consensus 185 ~~VlV~G~--G~vG~~avq~Ak~~Ga~vi~~~~~~~----------~~~~~~~~~Ga~~vi 233 (360)
T PLN02586 185 KHLGVAGL--GGLGHVAVKIGKAFGLKVTVISSSSN----------KEDEAINRLGADSFL 233 (360)
T ss_pred CEEEEECC--CHHHHHHHHHHHHCCCEEEEEeCCcc----------hhhhHHHhCCCcEEE
Confidence 45554553 78999999999999998555433221 124556789996544
No 291
>PRK08636 aspartate aminotransferase; Provisional
Probab=29.24 E-value=4.8e+02 Score=25.55 Aligned_cols=51 Identities=16% Similarity=0.079 Sum_probs=27.3
Q ss_pred eEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECC
Q 019410 123 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISK 185 (341)
Q Consensus 123 ~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~ 185 (341)
-++|.|+ +++..+++.+- ..-.-.|+++... ...-....+.+|++++.++-
T Consensus 98 I~it~G~---~~al~~~~~~l-~~~gd~Vlv~~P~--------y~~~~~~~~~~g~~~~~v~~ 148 (403)
T PRK08636 98 VVATMGS---KEGYVHLVQAI-TNPGDVAIVPDPA--------YPIHSQAFILAGGNVHKMPL 148 (403)
T ss_pred EEECCCh---HHHHHHHHHHh-CCCCCEEEEcCCC--------CcchHHHHHhcCCEEEEEec
Confidence 3456553 56655554432 1222345554322 12235678889999988753
No 292
>PRK09242 tropinone reductase; Provisional
Probab=29.17 E-value=4e+02 Score=23.82 Aligned_cols=33 Identities=24% Similarity=0.223 Sum_probs=23.8
Q ss_pred CCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcC
Q 019410 121 ADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 155 (341)
Q Consensus 121 ~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~ 155 (341)
...+|| |+ +|.-|.++|......|.+++++.+.
T Consensus 10 k~~lIt-Ga-~~gIG~~~a~~l~~~G~~v~~~~r~ 42 (257)
T PRK09242 10 QTALIT-GA-SKGIGLAIAREFLGLGADVLIVARD 42 (257)
T ss_pred CEEEEe-CC-CchHHHHHHHHHHHcCCEEEEEeCC
Confidence 344555 44 4789999999999999987666553
No 293
>PRK12827 short chain dehydrogenase; Provisional
Probab=29.16 E-value=4e+02 Score=23.42 Aligned_cols=30 Identities=30% Similarity=0.276 Sum_probs=22.6
Q ss_pred eEEEeCCCcchHHHHHHHHHHHcCCeEEEEEc
Q 019410 123 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 154 (341)
Q Consensus 123 ~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp 154 (341)
.+|| |+ +|--|.++|......|.+++++.+
T Consensus 9 ilIt-Ga-sg~iG~~la~~l~~~g~~v~~~~~ 38 (249)
T PRK12827 9 VLIT-GG-SGGLGRAIAVRLAADGADVIVLDI 38 (249)
T ss_pred EEEE-CC-CChHHHHHHHHHHHCCCeEEEEcC
Confidence 3444 44 478999999999999998777654
No 294
>PRK06701 short chain dehydrogenase; Provisional
Probab=29.05 E-value=4.7e+02 Score=24.28 Aligned_cols=11 Identities=18% Similarity=0.096 Sum_probs=7.6
Q ss_pred CCCeEEEEeeC
Q 019410 272 LKAKVHAFSVC 282 (341)
Q Consensus 272 ~~~rVigVe~~ 282 (341)
..++|.+|.+.
T Consensus 216 ~gIrv~~i~pG 226 (290)
T PRK06701 216 KGIRVNAVAPG 226 (290)
T ss_pred cCeEEEEEecC
Confidence 36788877754
No 295
>cd06344 PBP1_ABC_ligand_binding_like_9 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine/isoleucine/valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=29.01 E-value=4.9e+02 Score=24.41 Aligned_cols=31 Identities=16% Similarity=-0.050 Sum_probs=22.0
Q ss_pred CCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEE
Q 019410 120 GADCIITIGGIQSNHCRAAAVAAKYLNLDCYLI 152 (341)
Q Consensus 120 g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~iv 152 (341)
++..|+ |+.++..+.+++-.+...+++.+..
T Consensus 66 ~v~aii--G~~~s~~~~a~~~~~~~~~ip~i~~ 96 (332)
T cd06344 66 EILGVV--GHYSSDATLAALDIYQKAKLVLISP 96 (332)
T ss_pred CceEEE--cCCCcHHHHHHHHHHhhcCceEEcc
Confidence 444444 6666677788888888999887654
No 296
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=28.97 E-value=1.7e+02 Score=28.05 Aligned_cols=49 Identities=20% Similarity=0.181 Sum_probs=33.7
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEE
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 182 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~ 182 (341)
++|+..|+ |--|.+++..|+.+|.+.++++.... .+..+++.+|++.++
T Consensus 178 ~~VlV~G~--g~vG~~a~~~ak~~G~~~Vi~~~~~~----------~~~~~~~~~Ga~~~i 226 (358)
T TIGR03451 178 DSVAVIGC--GGVGDAAIAGAALAGASKIIAVDIDD----------RKLEWAREFGATHTV 226 (358)
T ss_pred CEEEEECC--CHHHHHHHHHHHHcCCCeEEEEcCCH----------HHHHHHHHcCCceEE
Confidence 45554553 77899999999999997555553321 257788899996433
No 297
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=28.87 E-value=1.7e+02 Score=27.65 Aligned_cols=50 Identities=10% Similarity=0.090 Sum_probs=33.1
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCC-eEEEEEcCCCCCcCCCCCcchhHHHHHh-CCCEEEEE
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNL-DCYLILRTSKVLVDQDPGLIGNLLVERL-VGAHIELI 183 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl-~~~ivvp~~~~~~~~~~~~~gn~~~~~~-~GAeV~~v 183 (341)
++|+..|+ .|--|.++...|+.+|. +++++.+.. .+...++. +||+-++.
T Consensus 156 ~~VlI~ga-~g~vG~~aiqlAk~~G~~~Vi~~~~s~-----------~~~~~~~~~lGa~~vi~ 207 (345)
T cd08293 156 QTMVVSGA-AGACGSLAGQIGRLLGCSRVVGICGSD-----------EKCQLLKSELGFDAAIN 207 (345)
T ss_pred CEEEEECC-CcHHHHHHHHHHHHcCCCEEEEEcCCH-----------HHHHHHHHhcCCcEEEE
Confidence 56655554 47889999999999998 555543321 24566655 99975443
No 298
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=28.86 E-value=4.1e+02 Score=23.43 Aligned_cols=54 Identities=20% Similarity=0.096 Sum_probs=32.4
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEEC
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 184 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~ 184 (341)
..+|| |+ +|--|.++|......|.+++++-+.... .......++..|+++..+.
T Consensus 7 ~~lIt-G~-~g~iG~~~a~~l~~~G~~vi~~~r~~~~-------~~~~~~~~~~~~~~~~~~~ 60 (253)
T PRK08217 7 VIVIT-GG-AQGLGRAMAEYLAQKGAKLALIDLNQEK-------LEEAVAECGALGTEVRGYA 60 (253)
T ss_pred EEEEE-CC-CchHHHHHHHHHHHCCCEEEEEeCCHHH-------HHHHHHHHHhcCCceEEEE
Confidence 34554 43 5789999999999999987665443210 0112333455577765554
No 299
>PRK05717 oxidoreductase; Validated
Probab=28.83 E-value=4.3e+02 Score=23.67 Aligned_cols=32 Identities=13% Similarity=-0.071 Sum_probs=23.7
Q ss_pred CCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEc
Q 019410 121 ADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 154 (341)
Q Consensus 121 ~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp 154 (341)
...+|| |+ +|.-|.++|..-...|.+++++-+
T Consensus 11 k~vlIt-G~-sg~IG~~~a~~l~~~g~~v~~~~~ 42 (255)
T PRK05717 11 RVALVT-GA-ARGIGLGIAAWLIAEGWQVVLADL 42 (255)
T ss_pred CEEEEe-CC-cchHHHHHHHHHHHcCCEEEEEcC
Confidence 334555 54 479999999999999998777643
No 300
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=28.72 E-value=2e+02 Score=27.88 Aligned_cols=59 Identities=17% Similarity=0.012 Sum_probs=40.7
Q ss_pred CCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECC
Q 019410 121 ADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISK 185 (341)
Q Consensus 121 ~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~ 185 (341)
.++|+|.+ .|-+...+=..|+..|-++.||+-+..|..+ -..-.+.++.+|-++.++.+
T Consensus 120 g~~IlTh~--~S~~v~~~l~~A~~~~k~~~V~VtESRP~~e----G~~~ak~L~~~gI~~~~I~D 178 (301)
T COG1184 120 GDVILTHS--FSKTVLEVLKTAADRGKRFKVIVTESRPRGE----GRIMAKELRQSGIPVTVIVD 178 (301)
T ss_pred CCEEEEec--CcHHHHHHHHHhhhcCCceEEEEEcCCCcch----HHHHHHHHHHcCCceEEEec
Confidence 36788885 3567778888888888888888877665321 12235667778888777765
No 301
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=28.68 E-value=1.6e+02 Score=27.44 Aligned_cols=49 Identities=14% Similarity=0.046 Sum_probs=34.1
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEE
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 182 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~ 182 (341)
++|+..| ..|..|++++..|+.+|.+.+++.+.. .+...++.+|++.++
T Consensus 142 ~~vlI~g-a~g~~g~~~~~~a~~~g~~v~~~~~~~-----------~~~~~~~~~g~~~~~ 190 (334)
T PTZ00354 142 QSVLIHA-GASGVGTAAAQLAEKYGAATIITTSSE-----------EKVDFCKKLAAIILI 190 (334)
T ss_pred CEEEEEc-CCchHHHHHHHHHHHcCCEEEEEeCCH-----------HHHHHHHHcCCcEEE
Confidence 4555555 347999999999999999876654321 245666779986444
No 302
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=28.67 E-value=1.8e+02 Score=28.18 Aligned_cols=49 Identities=10% Similarity=0.104 Sum_probs=33.0
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEE
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 182 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~ 182 (341)
++|+..|+ |.-|.+++.+|+.+|.+-++.+... ..++..++.+||+.++
T Consensus 187 ~~VlV~G~--G~iG~~a~q~Ak~~G~~~Vi~~~~~----------~~~~~~a~~~Ga~~~i 235 (368)
T TIGR02818 187 DTVAVFGL--GGIGLSVIQGARMAKASRIIAIDIN----------PAKFELAKKLGATDCV 235 (368)
T ss_pred CEEEEECC--CHHHHHHHHHHHHcCCCeEEEEcCC----------HHHHHHHHHhCCCeEE
Confidence 45554553 7899999999999999544444322 1257778889996543
No 303
>PRK05650 short chain dehydrogenase; Provisional
Probab=28.62 E-value=4e+02 Score=24.17 Aligned_cols=72 Identities=15% Similarity=0.037 Sum_probs=0.0
Q ss_pred HHHHHhCCCEEEEECCccccccCcHHHHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCE
Q 019410 170 LLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDD 249 (341)
Q Consensus 170 ~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~ 249 (341)
...+...|++|+.+.+.. +..+.+.+++...+.+..++..+-.++..... +..++.++.. .+|.
T Consensus 17 a~~l~~~g~~V~~~~r~~-------~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~---~~~~i~~~~~------~id~ 80 (270)
T PRK05650 17 ALRWAREGWRLALADVNE-------EGGEETLKLLREAGGDGFYQRCDVRDYSQLTA---LAQACEEKWG------GIDV 80 (270)
T ss_pred HHHHHHCCCEEEEEeCCH-------HHHHHHHHHHHhcCCceEEEEccCCCHHHHHH---HHHHHHHHcC------CCCE
Q ss_pred EEEcCCch
Q 019410 250 IVVACGSG 257 (341)
Q Consensus 250 Ivv~vGtG 257 (341)
||..+|.+
T Consensus 81 lI~~ag~~ 88 (270)
T PRK05650 81 IVNNAGVA 88 (270)
T ss_pred EEECCCCC
No 304
>PRK06114 short chain dehydrogenase; Provisional
Probab=28.61 E-value=4.3e+02 Score=23.67 Aligned_cols=56 Identities=16% Similarity=0.013 Sum_probs=34.0
Q ss_pred CCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEEC
Q 019410 121 ADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 184 (341)
Q Consensus 121 ~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~ 184 (341)
...+|| |++ +--|.++|..-...|.++++..+..... .......++..|.++..+.
T Consensus 9 k~~lVt-G~s-~gIG~~ia~~l~~~G~~v~~~~r~~~~~------~~~~~~~l~~~~~~~~~~~ 64 (254)
T PRK06114 9 QVAFVT-GAG-SGIGQRIAIGLAQAGADVALFDLRTDDG------LAETAEHIEAAGRRAIQIA 64 (254)
T ss_pred CEEEEE-CCC-chHHHHHHHHHHHCCCEEEEEeCCcchH------HHHHHHHHHhcCCceEEEE
Confidence 334555 544 5789999999999999888776533210 0112334555676766554
No 305
>PRK06847 hypothetical protein; Provisional
Probab=28.60 E-value=82 Score=30.33 Aligned_cols=30 Identities=20% Similarity=0.254 Sum_probs=24.2
Q ss_pred eEEEeCCCcchHHHHHHHHHHHcCCeEEEEEc
Q 019410 123 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 154 (341)
Q Consensus 123 ~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp 154 (341)
.|+..|| |-.|.++|...++.|++++|+=.
T Consensus 6 ~V~IVGa--G~aGl~~A~~L~~~g~~v~v~E~ 35 (375)
T PRK06847 6 KVLIVGG--GIGGLSAAIALRRAGIAVDLVEI 35 (375)
T ss_pred eEEEECC--CHHHHHHHHHHHhCCCCEEEEec
Confidence 3454566 78999999999999999888843
No 306
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=28.57 E-value=82 Score=31.67 Aligned_cols=26 Identities=23% Similarity=0.036 Sum_probs=22.9
Q ss_pred CcchHHHHHHHHHHHcCCeEEEEEcC
Q 019410 130 IQSNHCRAAAVAAKYLNLDCYLILRT 155 (341)
Q Consensus 130 s~GNhg~AlA~aa~~~Gl~~~ivvp~ 155 (341)
|+|-.|.++|.++...|.+++++...
T Consensus 212 SSG~~G~aiA~~l~~~Ga~V~~v~~~ 237 (399)
T PRK05579 212 SSGKMGYALARAAARRGADVTLVSGP 237 (399)
T ss_pred CcchHHHHHHHHHHHCCCEEEEeCCC
Confidence 57889999999999999999888653
No 307
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=28.52 E-value=4e+02 Score=23.25 Aligned_cols=54 Identities=11% Similarity=0.037 Sum_probs=33.9
Q ss_pred eEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEEC
Q 019410 123 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 184 (341)
Q Consensus 123 ~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~ 184 (341)
+++..|+ +|.-|..+|......|.+++++.+..... ......++..|.++..+.
T Consensus 7 ~ilItGa-sg~iG~~l~~~l~~~g~~v~~~~r~~~~~-------~~~~~~~~~~~~~~~~~~ 60 (246)
T PRK05653 7 TALVTGA-SRGIGRAIALRLAADGAKVVIYDSNEEAA-------EALAAELRAAGGEARVLV 60 (246)
T ss_pred EEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChhHH-------HHHHHHHHhcCCceEEEE
Confidence 3443454 58999999999999999976665542210 111334455677777665
No 308
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=28.42 E-value=4.3e+02 Score=23.54 Aligned_cols=36 Identities=8% Similarity=-0.031 Sum_probs=25.6
Q ss_pred CCCCEEEEcCCchhHHHHHHHHHhcCCC----CCeEEEEeeC
Q 019410 245 VKFDDIVVACGSGGTIAGLSLGSWLGTL----KAKVHAFSVC 282 (341)
Q Consensus 245 ~~~D~Ivv~vGtGGt~aGl~~~~k~~~~----~~rVigVe~~ 282 (341)
.++|+||+. +..++.|+..++++.+. ++.|+|++-.
T Consensus 174 ~~~~ai~~~--~d~~a~g~~~~l~~~g~~~p~di~iig~d~~ 213 (265)
T cd06285 174 SPPTAIFAV--NDFAAIGVMGAARDRGLRVPDDVALVGYNDI 213 (265)
T ss_pred CCCCEEEEc--CcHHHHHHHHHHHHcCCCCCcceEEEeecCc
Confidence 358888874 55677899999998763 5567776543
No 309
>PRK13054 lipid kinase; Reviewed
Probab=28.36 E-value=1.1e+02 Score=29.09 Aligned_cols=39 Identities=15% Similarity=0.093 Sum_probs=19.5
Q ss_pred CCEEEEcCCchhHHHHHHHHHhcCCCCC-eEEEEeeCCCCc
Q 019410 247 FDDIVVACGSGGTIAGLSLGSWLGTLKA-KVHAFSVCDDPD 286 (341)
Q Consensus 247 ~D~Ivv~vGtGGt~aGl~~~~k~~~~~~-rVigVe~~g~~~ 286 (341)
+|.|| .+|+=||+..++.++....... -.+||-+.|+..
T Consensus 57 ~d~vv-v~GGDGTl~evv~~l~~~~~~~~~~lgiiP~GTgN 96 (300)
T PRK13054 57 VATVI-AGGGDGTINEVATALAQLEGDARPALGILPLGTAN 96 (300)
T ss_pred CCEEE-EECCccHHHHHHHHHHhhccCCCCcEEEEeCCcHh
Confidence 45433 4555566666666665321111 125666666543
No 310
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=28.34 E-value=4e+02 Score=23.81 Aligned_cols=71 Identities=17% Similarity=0.117 Sum_probs=39.5
Q ss_pred HHHHhCCCEEEEECCccccccCcHHHHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEE
Q 019410 171 LVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDI 250 (341)
Q Consensus 171 ~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~I 250 (341)
+.+...|++|+.+.+... ..++..+.+...+.+..+++.+-.|+.. ...+..++.+++ ..+|.|
T Consensus 28 ~~l~~~G~~V~~~~r~~~-------~~~~~~~~i~~~~~~~~~~~~D~~~~~~---~~~~~~~~~~~~------~~~d~l 91 (255)
T PRK07523 28 EGLAQAGAEVILNGRDPA-------KLAAAAESLKGQGLSAHALAFDVTDHDA---VRAAIDAFEAEI------GPIDIL 91 (255)
T ss_pred HHHHHcCCEEEEEeCCHH-------HHHHHHHHHHhcCceEEEEEccCCCHHH---HHHHHHHHHHhc------CCCCEE
Confidence 334456999998875421 1233344444433334455555445443 333445555554 369999
Q ss_pred EEcCCch
Q 019410 251 VVACGSG 257 (341)
Q Consensus 251 vv~vGtG 257 (341)
|..+|.+
T Consensus 92 i~~ag~~ 98 (255)
T PRK07523 92 VNNAGMQ 98 (255)
T ss_pred EECCCCC
Confidence 9999865
No 311
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=28.33 E-value=1.5e+02 Score=28.95 Aligned_cols=49 Identities=14% Similarity=0.109 Sum_probs=34.5
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEE
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 182 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~ 182 (341)
++|+..|+ .|-.|.+++.+|+.+|.+.+++.+.. .+...++.+|++.++
T Consensus 195 ~~vlV~ga-~g~iG~a~~~lak~~G~~vv~~~~s~-----------~~~~~~~~~G~~~~i 243 (393)
T cd08246 195 DNVLIWGA-SGGLGSMAIQLARAAGANPVAVVSSE-----------EKAEYCRALGAEGVI 243 (393)
T ss_pred CEEEEECC-CcHHHHHHHHHHHHcCCeEEEEeCCH-----------HHHHHHHHcCCCEEE
Confidence 45555553 47899999999999999976654321 246777889986543
No 312
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=28.32 E-value=1.2e+02 Score=28.23 Aligned_cols=51 Identities=18% Similarity=0.128 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHcCC----CeEEEeCCCc--chHHHHHHHHHHHcCCe---EEEEEcCCC
Q 019410 107 RKLEFLMADAVAQGA----DCIITIGGIQ--SNHCRAAAVAAKYLNLD---CYLILRTSK 157 (341)
Q Consensus 107 Rkl~~ll~~A~~~g~----~~vVt~G~s~--GNhg~AlA~aa~~~Gl~---~~ivvp~~~ 157 (341)
-.+..+++.+.+.+. -++++-||.. -+|..+|+-.|+..|++ .|++++..-
T Consensus 14 ~~l~~~~~~~k~~~~~lHl~GLlSdGGVHSh~~Hl~al~~~a~~~gv~~V~vH~f~DGRD 73 (223)
T PF06415_consen 14 PVLLEAIEHAKKNGGRLHLMGLLSDGGVHSHIDHLFALIKLAKKQGVKKVYVHAFTDGRD 73 (223)
T ss_dssp HHHHHHHHHHCCTT--EEEEEEESS-SSS--HHHHHHHHHHHHHTT-SEEEEEEEE-SSS
T ss_pred HHHHHHHHHHHhcCCeEEEEEEecCCCccccHHHHHHHHHHHHHcCCCEEEEEEecCCCC
Confidence 346666777665543 2456667744 48999999999999987 678887643
No 313
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=28.07 E-value=2e+02 Score=28.46 Aligned_cols=50 Identities=20% Similarity=0.238 Sum_probs=35.8
Q ss_pred eEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECC
Q 019410 123 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISK 185 (341)
Q Consensus 123 ~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~ 185 (341)
.|...|. |-.|.....+|+.+|.+++.+-.+. .|.++.+.+||+.+....
T Consensus 169 ~V~I~G~--GGlGh~avQ~Aka~ga~Via~~~~~-----------~K~e~a~~lGAd~~i~~~ 218 (339)
T COG1064 169 WVAVVGA--GGLGHMAVQYAKAMGAEVIAITRSE-----------EKLELAKKLGADHVINSS 218 (339)
T ss_pred EEEEECC--cHHHHHHHHHHHHcCCeEEEEeCCh-----------HHHHHHHHhCCcEEEEcC
Confidence 3444443 4677777888898997777775432 368899999999888764
No 314
>PRK08226 short chain dehydrogenase; Provisional
Probab=28.07 E-value=4.2e+02 Score=23.72 Aligned_cols=31 Identities=16% Similarity=0.061 Sum_probs=23.2
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEc
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 154 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp 154 (341)
..+|| |+ +|.-|.++|......|.+++++-+
T Consensus 8 ~~lIt-G~-s~giG~~la~~l~~~G~~Vv~~~r 38 (263)
T PRK08226 8 TALIT-GA-LQGIGEGIARVFARHGANLILLDI 38 (263)
T ss_pred EEEEe-CC-CChHHHHHHHHHHHCCCEEEEecC
Confidence 33444 54 479999999999999998766644
No 315
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=27.99 E-value=1.9e+02 Score=26.81 Aligned_cols=49 Identities=12% Similarity=0.046 Sum_probs=35.0
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEE
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 182 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~ 182 (341)
++|+..|+ .|..|++++..|+.+|.+.+++.... .+...++.+|++-++
T Consensus 148 ~~vlI~ga-~g~vg~~~~~~A~~~G~~vi~~~~~~-----------~~~~~~~~~g~~~~~ 196 (324)
T cd08288 148 GPVLVTGA-AGGVGSVAVALLARLGYEVVASTGRP-----------EEADYLRSLGASEII 196 (324)
T ss_pred CEEEEECC-CcHHHHHHHHHHHHCCCeEEEEeCCH-----------HHHHHHHhcCCCEEE
Confidence 46665654 57899999999999999866654321 246777889985443
No 316
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=27.94 E-value=1.9e+02 Score=27.80 Aligned_cols=57 Identities=19% Similarity=0.111 Sum_probs=37.8
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchh--HHHHHhCCCEEEEECCc
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGN--LLVERLVGAHIELISKE 186 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn--~~~~~~~GAeV~~v~~~ 186 (341)
++|+|+|- |.+..++-..|++.|.++.+++.+..|.. .|. ...+...|-++.++.+.
T Consensus 117 ~~ILT~~~--S~tv~~~l~~a~~~~~~f~V~v~EsrP~~------~G~~~a~~L~~~gI~vtlI~Ds 175 (301)
T TIGR00511 117 DVVMTHCN--SEAALSVIKTAFEQGKDIEVIATETRPRK------QGHITAKELRDYGIPVTLIVDS 175 (301)
T ss_pred CEEEEECC--cHHHHHHHHHHHHcCCcEEEEEecCCCcc------hHHHHHHHHHHCCCCEEEEehh
Confidence 57888863 23445555667778888999988877632 232 44555678888888753
No 317
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=27.91 E-value=3.1e+02 Score=26.18 Aligned_cols=114 Identities=18% Similarity=0.140 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHHHcCCCeEE---EeCCCcchHHHH-------------HHHHHHHcCCeEEEEEcCCCCCcCCCCCcchh
Q 019410 106 VRKLEFLMADAVAQGADCII---TIGGIQSNHCRA-------------AAVAAKYLNLDCYLILRTSKVLVDQDPGLIGN 169 (341)
Q Consensus 106 ~Rkl~~ll~~A~~~g~~~vV---t~G~s~GNhg~A-------------lA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn 169 (341)
.|.+..++++.++.|...|. |.|-..|..-.. +=..|+++|+-.+-|+-+.. .
T Consensus 94 ~~~~~~fl~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~Gmgy~~EVemi~~A~~~gl~T~~yvf~~e-----------~ 162 (268)
T PF09370_consen 94 FRDMDRFLDELKELGFSGVQNFPTVGLIDGQFRQNLEETGMGYDREVEMIRKAHEKGLFTTAYVFNEE-----------Q 162 (268)
T ss_dssp T--HHHHHHHHHHHT-SEEEE-S-GGG--HHHHHHHHHTT--HHHHHHHHHHHHHTT-EE--EE-SHH-----------H
T ss_pred CCcHHHHHHHHHHhCCceEEECCcceeeccHHHHHHHhcCCCHHHHHHHHHHHHHCCCeeeeeecCHH-----------H
Confidence 46788889999999998887 666666665554 34567888888887776422 2
Q ss_pred HHHHHhCCCEEEEECCccccccCcHHHHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCE
Q 019410 170 LLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDD 249 (341)
Q Consensus 170 ~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~ 249 (341)
...|..-||+|+.+.-+ +-.. .. + |..+-....-.....+||.+.... .++|.
T Consensus 163 A~~M~~AGaDiiv~H~G-lT~g---G~-------~------------Ga~~~~sl~~a~~~~~~i~~aa~~----v~~di 215 (268)
T PF09370_consen 163 ARAMAEAGADIIVAHMG-LTTG---GS-------I------------GAKTALSLEEAAERIQEIFDAARA----VNPDI 215 (268)
T ss_dssp HHHHHHHT-SEEEEE-S-S--------------------------------S--HHHHHHHHHHHHHHHHC----C-TT-
T ss_pred HHHHHHcCCCEEEecCC-ccCC---CC-------c------------CccccCCHHHHHHHHHHHHHHHHH----hCCCe
Confidence 45566678888877643 1100 00 0 001111233445667888887764 57899
Q ss_pred EEEcCCch
Q 019410 250 IVVACGSG 257 (341)
Q Consensus 250 Ivv~vGtG 257 (341)
|+++-|+-
T Consensus 216 i~l~hGGP 223 (268)
T PF09370_consen 216 IVLCHGGP 223 (268)
T ss_dssp EEEEECTT
T ss_pred EEEEeCCC
Confidence 99888653
No 318
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=27.88 E-value=2.3e+02 Score=27.82 Aligned_cols=49 Identities=20% Similarity=0.203 Sum_probs=32.9
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEE
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 182 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~ 182 (341)
+.|+..||+ |--|.++...|+..|. ++++.-.. ..++++++.+||+-++
T Consensus 159 ~~vLv~ggs-ggVG~~aiQlAk~~~~-~~v~t~~s----------~e~~~l~k~lGAd~vv 207 (347)
T KOG1198|consen 159 KSVLVLGGS-GGVGTAAIQLAKHAGA-IKVVTACS----------KEKLELVKKLGADEVV 207 (347)
T ss_pred CeEEEEeCC-cHHHHHHHHHHHhcCC-cEEEEEcc----------cchHHHHHHcCCcEee
Confidence 455556543 6789999999999993 33333222 1268999999997543
No 319
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=27.83 E-value=4.4e+02 Score=23.52 Aligned_cols=43 Identities=14% Similarity=0.033 Sum_probs=28.5
Q ss_pred HHHHHHHHcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEc
Q 019410 111 FLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 154 (341)
Q Consensus 111 ~ll~~A~~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp 154 (341)
..+..+...+.+.||.. +..++........++..|++.+++-.
T Consensus 46 ~~i~~~~~~~~dgiii~-~~~~~~~~~~l~~~~~~~ipvV~~~~ 88 (277)
T cd06319 46 ENLRTAIDKGVSGIIIS-PTNSSAAVTLLKLAAQAKIPVVIADI 88 (277)
T ss_pred HHHHHHHhcCCCEEEEc-CCchhhhHHHHHHHHHCCCCEEEEec
Confidence 45566667789998864 34444444555667788999988753
No 320
>PLN02564 6-phosphofructokinase
Probab=27.60 E-value=7.1e+02 Score=25.86 Aligned_cols=49 Identities=10% Similarity=0.085 Sum_probs=34.3
Q ss_pred HHHHHHHHHHcCCCeEEEeCCCcchHH-HHHHHHHHHcCCeE-EEEEcCCC
Q 019410 109 LEFLMADAVAQGADCIITIGGIQSNHC-RAAAVAAKYLNLDC-YLILRTSK 157 (341)
Q Consensus 109 l~~ll~~A~~~g~~~vVt~G~s~GNhg-~AlA~aa~~~Gl~~-~ivvp~~~ 157 (341)
...+++..++.+.+.++..||-.+..+ ..|+..+++.|+++ +|-+|.+.
T Consensus 165 ~~~iv~~L~~~~Id~LivIGGDGS~~gA~~L~e~~~~~g~~i~VIGIPKTI 215 (484)
T PLN02564 165 TSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEIRRRGLKVAVAGIPKTI 215 (484)
T ss_pred HHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEEecccc
Confidence 455666677889999999997655543 35566777789985 45567655
No 321
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=27.57 E-value=1.9e+02 Score=27.67 Aligned_cols=48 Identities=25% Similarity=0.205 Sum_probs=31.9
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCC-eEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEE
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNL-DCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 182 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl-~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~ 182 (341)
++|+..| + |..|++++..|+.+|+ +++++.+ . ..+...++.+|++-++
T Consensus 179 ~~vlI~g-~-g~vG~~~~~lak~~G~~~v~~~~~-~----------~~~~~~~~~~g~~~vi 227 (361)
T cd08231 179 DTVVVQG-A-GPLGLYAVAAAKLAGARRVIVIDG-S----------PERLELAREFGADATI 227 (361)
T ss_pred CEEEEEC-C-CHHHHHHHHHHHHcCCCeEEEEcC-C----------HHHHHHHHHcCCCeEE
Confidence 4455455 3 8999999999999999 5444422 1 1246677889985433
No 322
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=27.54 E-value=1.1e+02 Score=27.03 Aligned_cols=29 Identities=17% Similarity=0.180 Sum_probs=21.2
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEE
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLI 152 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~iv 152 (341)
+.++.+| .|+-|+++|..++.+|.+++|+
T Consensus 24 k~vvV~G--YG~vG~g~A~~lr~~Ga~V~V~ 52 (162)
T PF00670_consen 24 KRVVVIG--YGKVGKGIARALRGLGARVTVT 52 (162)
T ss_dssp SEEEEE----SHHHHHHHHHHHHTT-EEEEE
T ss_pred CEEEEeC--CCcccHHHHHHHhhCCCEEEEE
Confidence 4445455 5899999999999999888776
No 323
>PRK06114 short chain dehydrogenase; Provisional
Probab=27.50 E-value=4.5e+02 Score=23.54 Aligned_cols=73 Identities=19% Similarity=0.145 Sum_probs=40.8
Q ss_pred HHHHHhCCCEEEEECCccccccCcHHHHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCE
Q 019410 170 LLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDD 249 (341)
Q Consensus 170 ~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~ 249 (341)
.+.+...|++|+.+.+... ...++..+++...+.+..+++.+-.++.... .+..++.+++ +.+|.
T Consensus 25 a~~l~~~G~~v~~~~r~~~------~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~---~~~~~~~~~~------g~id~ 89 (254)
T PRK06114 25 AIGLAQAGADVALFDLRTD------DGLAETAEHIEAAGRRAIQIAADVTSKADLR---AAVARTEAEL------GALTL 89 (254)
T ss_pred HHHHHHCCCEEEEEeCCcc------hHHHHHHHHHHhcCCceEEEEcCCCCHHHHH---HHHHHHHHHc------CCCCE
Confidence 3445567999998875321 1123344455443434455555544554432 3344555554 36999
Q ss_pred EEEcCCch
Q 019410 250 IVVACGSG 257 (341)
Q Consensus 250 Ivv~vGtG 257 (341)
||..+|..
T Consensus 90 li~~ag~~ 97 (254)
T PRK06114 90 AVNAAGIA 97 (254)
T ss_pred EEECCCCC
Confidence 99999854
No 324
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=27.44 E-value=4.3e+02 Score=23.26 Aligned_cols=12 Identities=17% Similarity=0.036 Sum_probs=8.6
Q ss_pred CCCeEEEEeeCC
Q 019410 272 LKAKVHAFSVCD 283 (341)
Q Consensus 272 ~~~rVigVe~~g 283 (341)
.+++|.+|.+..
T Consensus 184 ~~i~v~~v~pg~ 195 (253)
T PRK08217 184 YGIRVAAIAPGV 195 (253)
T ss_pred cCcEEEEEeeCC
Confidence 468888887644
No 325
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=27.40 E-value=4.4e+02 Score=23.39 Aligned_cols=55 Identities=15% Similarity=0.056 Sum_probs=33.4
Q ss_pred EEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECC
Q 019410 124 IITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISK 185 (341)
Q Consensus 124 vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~ 185 (341)
++..| .+|.-|.++|..-...|.+++++.+...+. .......++..+.++..+..
T Consensus 5 vlItG-~sg~iG~~la~~L~~~g~~vi~~~r~~~~~------~~~~~~~~~~~~~~~~~~~~ 59 (256)
T PRK12745 5 ALVTG-GRRGIGLGIARALAAAGFDLAINDRPDDEE------LAATQQELRALGVEVIFFPA 59 (256)
T ss_pred EEEeC-CCchHHHHHHHHHHHCCCEEEEEecCchhH------HHHHHHHHHhcCCceEEEEe
Confidence 33335 457999999999999999887776543211 01123334455666666643
No 326
>PRK08589 short chain dehydrogenase; Validated
Probab=27.37 E-value=4.5e+02 Score=23.97 Aligned_cols=53 Identities=15% Similarity=0.077 Sum_probs=33.6
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEEC
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 184 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~ 184 (341)
..||| |+ ++--|+++|......|.+++++-+. .. . ......++..|.++..+.
T Consensus 8 ~vlIt-Ga-s~gIG~aia~~l~~~G~~vi~~~r~-~~-~------~~~~~~~~~~~~~~~~~~ 60 (272)
T PRK08589 8 VAVIT-GA-STGIGQASAIALAQEGAYVLAVDIA-EA-V------SETVDKIKSNGGKAKAYH 60 (272)
T ss_pred EEEEE-CC-CchHHHHHHHHHHHCCCEEEEEeCc-HH-H------HHHHHHHHhcCCeEEEEE
Confidence 34555 54 3678999999999999998887654 21 0 112344455676666554
No 327
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=27.12 E-value=1.2e+02 Score=28.80 Aligned_cols=16 Identities=25% Similarity=0.302 Sum_probs=8.0
Q ss_pred cCCchhHHHHHHHHHh
Q 019410 253 ACGSGGTIAGLSLGSW 268 (341)
Q Consensus 253 ~vGtGGt~aGl~~~~k 268 (341)
++|+=||+.-++.++.
T Consensus 58 ~~GGDGTi~ev~ngl~ 73 (293)
T TIGR03702 58 AGGGDGTLREVATALA 73 (293)
T ss_pred EEcCChHHHHHHHHHH
Confidence 4444455555555554
No 328
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=27.09 E-value=3.1e+02 Score=26.76 Aligned_cols=48 Identities=15% Similarity=0.133 Sum_probs=26.9
Q ss_pred HHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhc-----------------CCCCCeEEEEeeCC
Q 019410 230 AIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWL-----------------GTLKAKVHAFSVCD 283 (341)
Q Consensus 230 ~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~-----------------~~~~~rVigVe~~g 283 (341)
...++.+++.+ ..+|. |+++|+|..+ =++++... ..+..++|.|....
T Consensus 68 ~v~~~~~~~~~----~~~d~-IiaiGGGs~~-D~AK~va~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt~ 132 (370)
T cd08551 68 NVDAAVAAYRE----EGCDG-VIAVGGGSVL-DTAKAIALLATNPGDIWDYEGGKPVIKPALPLIAIPTTA 132 (370)
T ss_pred HHHHHHHHHHh----cCCCE-EEEeCCchHH-HHHHHHHHHHhCCCcHHHHhCcccccCCCCCEEEecCCC
Confidence 34566666653 34665 6778887653 23332211 02357888888654
No 329
>PRK07904 short chain dehydrogenase; Provisional
Probab=26.99 E-value=4.8e+02 Score=23.63 Aligned_cols=33 Identities=18% Similarity=0.057 Sum_probs=22.6
Q ss_pred eEEEeCCCcchHHHHHHHHHHHcC-CeEEEEEcCC
Q 019410 123 CIITIGGIQSNHCRAAAVAAKYLN-LDCYLILRTS 156 (341)
Q Consensus 123 ~vVt~G~s~GNhg~AlA~aa~~~G-l~~~ivvp~~ 156 (341)
+++..|+ +|--|.++|......| .+++++.++.
T Consensus 10 ~vlItGa-s~giG~~la~~l~~~gg~~V~~~~r~~ 43 (253)
T PRK07904 10 TILLLGG-TSEIGLAICERYLKNAPARVVLAALPD 43 (253)
T ss_pred EEEEEcC-CcHHHHHHHHHHHhcCCCeEEEEeCCc
Confidence 3443454 4678888888877774 8888876643
No 330
>PRK09206 pyruvate kinase; Provisional
Probab=26.92 E-value=6.7e+02 Score=25.91 Aligned_cols=133 Identities=14% Similarity=0.047 Sum_probs=67.2
Q ss_pred HHHHHHHHHcCCeEEEEE---cCCCCCcCCCCCc--chhHHHHHhCCCEEEEECCc----cccccCcHHHHHHHHHHHHH
Q 019410 136 RAAAVAAKYLNLDCYLIL---RTSKVLVDQDPGL--IGNLLVERLVGAHIELISKE----EYSKIGSVTLTNILKEKLLK 206 (341)
Q Consensus 136 ~AlA~aa~~~Gl~~~ivv---p~~~~~~~~~~~~--~gn~~~~~~~GAeV~~v~~~----~~~~~~~~~~~~~~a~~l~~ 206 (341)
.-+...|++.|.++++-. .+-... +.|++ ...+...-.-|++-+..+.+ .|-. ...+.+.+++++.++
T Consensus 261 k~ii~~~~~~gkpvI~ATqmLeSM~~n--p~PTRAEvsDVanav~dG~DavMLS~ETA~G~yPv-eaV~~m~~I~~~~E~ 337 (470)
T PRK09206 261 KMMIEKCNRARKVVITATQMLDSMIKN--PRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPL-EAVSIMATICERTDR 337 (470)
T ss_pred HHHHHHHHHcCCCEEEEchhHHHHhhC--CCCCchhhHHHHHHhhhCCcEEEEechhcCCCCHH-HHHHHHHHHHHHHHh
Confidence 346678899999888752 111110 01211 12233444468997777542 2311 012233444443332
Q ss_pred hCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcCCCCCeEEEEeeC
Q 019410 207 EGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVC 282 (341)
Q Consensus 207 ~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~~~~~rVigVe~~ 282 (341)
..+..+..................+.++.+.+. .++||+.+=||.|+.-+++ +.|+..|+++...
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~ia~sa~~~A~~l~-------a~aIv~~T~sG~tA~~is~----~RP~~pIia~t~~ 402 (470)
T PRK09206 338 VMNSRLESNNDNRKLRITEAVCRGAVETAEKLD-------APLIVVATQGGKSARSVRK----YFPDATILALTTN 402 (470)
T ss_pred hcchhhhhhccccCCChHHHHHHHHHHHHhcCC-------CCEEEEECCCcHHHHHHHh----hCCCCCEEEECCC
Confidence 111111111100001112233344666766653 6789999999999876654 3488999997754
No 331
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=26.91 E-value=2.8e+02 Score=28.49 Aligned_cols=48 Identities=10% Similarity=0.180 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHc-CC----CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCC
Q 019410 107 RKLEFLMADAVAQ-GA----DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTS 156 (341)
Q Consensus 107 Rkl~~ll~~A~~~-g~----~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~ 156 (341)
|+..+.+.++.+. +. ++|+..|. ||-|..+|.....+|.+++-+-+..
T Consensus 218 ~Gv~~~~~~~l~~~~~~l~Gk~VaVqG~--GnVg~~aa~~L~e~GakVVavSD~~ 270 (454)
T PTZ00079 218 YGLVYFVLEVLKKLNDSLEGKTVVVSGS--GNVAQYAVEKLLQLGAKVLTMSDSD 270 (454)
T ss_pred HHHHHHHHHHHHHcCCCcCCCEEEEECC--CHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 5777777776543 22 46665564 9999999999999999888776543
No 332
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=26.91 E-value=1.1e+02 Score=23.13 Aligned_cols=34 Identities=26% Similarity=0.278 Sum_probs=23.8
Q ss_pred HcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEc
Q 019410 118 AQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 154 (341)
Q Consensus 118 ~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp 154 (341)
..+...||+..|..-.| .|..||.+|+++++-++
T Consensus 28 ~~~~~Giv~~~Gg~~SH---~aIlAr~~giP~ivg~~ 61 (80)
T PF00391_consen 28 LQRVAGIVTEEGGPTSH---AAILARELGIPAIVGVG 61 (80)
T ss_dssp HTTSSEEEESSSSTTSH---HHHHHHHTT-EEEESTT
T ss_pred hhheEEEEEEcCCccch---HHHHHHHcCCCEEEeec
Confidence 45577898764433344 48899999999998775
No 333
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=26.88 E-value=1.2e+02 Score=22.20 Aligned_cols=23 Identities=13% Similarity=-0.097 Sum_probs=19.6
Q ss_pred chHHHHHHHHHHHcCCeEEEEEc
Q 019410 132 SNHCRAAAVAAKYLNLDCYLILR 154 (341)
Q Consensus 132 GNhg~AlA~aa~~~Gl~~~ivvp 154 (341)
|=.|.+.|+..++.|++++|+=.
T Consensus 5 G~sGl~aA~~L~~~g~~v~v~E~ 27 (68)
T PF13450_consen 5 GISGLAAAYYLAKAGYRVTVFEK 27 (68)
T ss_dssp SHHHHHHHHHHHHTTSEEEEEES
T ss_pred CHHHHHHHHHHHHCCCcEEEEec
Confidence 57899999999999998888843
No 334
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=26.83 E-value=1.9e+02 Score=28.17 Aligned_cols=51 Identities=18% Similarity=0.227 Sum_probs=35.4
Q ss_pred eEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHh-CCCEEEEECC
Q 019410 123 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERL-VGAHIELISK 185 (341)
Q Consensus 123 ~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~-~GAeV~~v~~ 185 (341)
+++..|+ |.-|...+++++.+|-..+++++... .++++.+. .|++++....
T Consensus 171 ~V~V~Ga--GpIGLla~~~a~~~Ga~~Viv~d~~~----------~Rl~~A~~~~g~~~~~~~~ 222 (350)
T COG1063 171 TVVVVGA--GPIGLLAIALAKLLGASVVIVVDRSP----------ERLELAKEAGGADVVVNPS 222 (350)
T ss_pred EEEEECC--CHHHHHHHHHHHHcCCceEEEeCCCH----------HHHHHHHHhCCCeEeecCc
Confidence 4555564 78888888888888888888885432 24777766 6777665543
No 335
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=26.74 E-value=1.1e+02 Score=30.47 Aligned_cols=32 Identities=22% Similarity=0.310 Sum_probs=26.1
Q ss_pred EEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCC
Q 019410 124 IITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSK 157 (341)
Q Consensus 124 vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~ 157 (341)
|-..|| |-.|+.+|.+|+++|++++++-|...
T Consensus 4 vgIlGG--GQLgrMm~~aa~~lG~~v~vLdp~~~ 35 (375)
T COG0026 4 VGILGG--GQLGRMMALAAARLGIKVIVLDPDAD 35 (375)
T ss_pred EEEEcC--cHHHHHHHHHHHhcCCEEEEecCCCC
Confidence 334466 78999999999999999999987543
No 336
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=26.71 E-value=2.2e+02 Score=26.88 Aligned_cols=49 Identities=18% Similarity=0.243 Sum_probs=33.9
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEE
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 182 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~ 182 (341)
++|+..| .|..|.+++..|+.+|++.++.+.... .+..+++.+|++-++
T Consensus 170 ~~vlI~g--~g~vg~~~~~lak~~G~~~v~~~~~~~----------~~~~~~~~~ga~~v~ 218 (345)
T cd08287 170 STVVVVG--DGAVGLCAVLAAKRLGAERIIAMSRHE----------DRQALAREFGATDIV 218 (345)
T ss_pred CEEEEEC--CCHHHHHHHHHHHHcCCCEEEEECCCH----------HHHHHHHHcCCceEe
Confidence 4444444 479999999999999998666654332 246777889985433
No 337
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=26.70 E-value=1.5e+02 Score=28.39 Aligned_cols=75 Identities=17% Similarity=0.174 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcCCCCCe
Q 019410 196 LTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAK 275 (341)
Q Consensus 196 ~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~~~~~r 275 (341)
.++++.+.+++.+.......... . |. +.|+++++.. ..+|.||+ +|+=||+.-++.++.......
T Consensus 21 ~~~~~~~~l~~~g~~~~~~~t~~--~----g~---a~~~a~~a~~----~~~D~via-~GGDGTv~evingl~~~~~~~- 85 (301)
T COG1597 21 LLREVEELLEEAGHELSVRVTEE--A----GD---AIEIAREAAV----EGYDTVIA-AGGDGTVNEVANGLAGTDDPP- 85 (301)
T ss_pred HHHHHHHHHHhcCCeEEEEEeec--C----cc---HHHHHHHHHh----cCCCEEEE-ecCcchHHHHHHHHhcCCCCc-
Confidence 44556666666553322222211 1 21 3455555542 24676655 455577777888887654443
Q ss_pred EEEEeeCCCCc
Q 019410 276 VHAFSVCDDPD 286 (341)
Q Consensus 276 VigVe~~g~~~ 286 (341)
+|+-+.|+..
T Consensus 86 -LgilP~GT~N 95 (301)
T COG1597 86 -LGILPGGTAN 95 (301)
T ss_pred -eEEecCCchH
Confidence 8888888754
No 338
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=26.69 E-value=2.4e+02 Score=26.34 Aligned_cols=46 Identities=17% Similarity=0.221 Sum_probs=31.0
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEE
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHI 180 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV 180 (341)
++|+..| .|..|.+++..|+.+|.+.+++.+.. .+...++.+|++-
T Consensus 169 ~~vlV~g--~g~vg~~~~~la~~~g~~v~~~~~~~-----------~~~~~~~~~g~~~ 214 (329)
T cd08298 169 QRLGLYG--FGASAHLALQIARYQGAEVFAFTRSG-----------EHQELARELGADW 214 (329)
T ss_pred CEEEEEC--CcHHHHHHHHHHHHCCCeEEEEcCCh-----------HHHHHHHHhCCcE
Confidence 3444454 36889999999999998766654432 1356667788743
No 339
>PRK05867 short chain dehydrogenase; Provisional
Probab=26.68 E-value=2.5e+02 Score=25.22 Aligned_cols=10 Identities=30% Similarity=0.312 Sum_probs=7.1
Q ss_pred CCeEEEEeeC
Q 019410 273 KAKVHAFSVC 282 (341)
Q Consensus 273 ~~rVigVe~~ 282 (341)
.++|..|.+.
T Consensus 183 gI~vn~i~PG 192 (253)
T PRK05867 183 KIRVNSVSPG 192 (253)
T ss_pred CeEEEEeecC
Confidence 5788877654
No 340
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=26.68 E-value=5.5e+02 Score=24.22 Aligned_cols=51 Identities=8% Similarity=0.094 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCC
Q 019410 107 RKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKV 158 (341)
Q Consensus 107 Rkl~~ll~~A~~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~ 158 (341)
++.+.+++++.+.|.+.|+..-=+ -.+..-+...|+..|+..+.++..+++
T Consensus 106 ~G~e~F~~~~~~aGvdgviipDLP-~ee~~~~~~~~~~~gi~~I~lv~PtT~ 156 (263)
T CHL00200 106 YGINKFIKKISQAGVKGLIIPDLP-YEESDYLISVCNLYNIELILLIAPTSS 156 (263)
T ss_pred hCHHHHHHHHHHcCCeEEEecCCC-HHHHHHHHHHHHHcCCCEEEEECCCCC
Confidence 356667777888888877754322 256667777888888888877776653
No 341
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=26.67 E-value=5.7e+02 Score=24.38 Aligned_cols=50 Identities=14% Similarity=0.208 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCC
Q 019410 107 RKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSK 157 (341)
Q Consensus 107 Rkl~~ll~~A~~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~ 157 (341)
++.+.+++++.+.|.+.++..- --=-+..-+-.+|+++|+..+.+++.++
T Consensus 109 ~Gie~F~~~~~~~GvdGlivpD-LP~ee~~~~~~~~~~~gi~~I~lvaPtt 158 (265)
T COG0159 109 YGIEKFLRRAKEAGVDGLLVPD-LPPEESDELLKAAEKHGIDPIFLVAPTT 158 (265)
T ss_pred hhHHHHHHHHHHcCCCEEEeCC-CChHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 3455556666666666555321 0113444555566666666666665544
No 342
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=26.62 E-value=96 Score=28.95 Aligned_cols=32 Identities=16% Similarity=0.082 Sum_probs=27.0
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcC
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 155 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~ 155 (341)
..++-+|+ |.-++++|..|+.+|++++++=+.
T Consensus 101 ~~L~IfGa--G~va~~la~la~~lGf~V~v~D~R 132 (246)
T TIGR02964 101 PHVVLFGA--GHVGRALVRALAPLPCRVTWVDSR 132 (246)
T ss_pred CEEEEECC--cHHHHHHHHHHhcCCCEEEEEeCC
Confidence 56777786 789999999999999999987443
No 343
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=26.60 E-value=6.1e+02 Score=24.72 Aligned_cols=31 Identities=23% Similarity=0.357 Sum_probs=16.4
Q ss_pred EEEEcCCchhH--HHHHHHHHhcCCCCCeEEEEee
Q 019410 249 DIVVACGSGGT--IAGLSLGSWLGTLKAKVHAFSV 281 (341)
Q Consensus 249 ~Ivv~vGtGGt--~aGl~~~~k~~~~~~rVigVe~ 281 (341)
.+|+++|+|.. ++|.+..... ..++++.|..
T Consensus 85 d~IIaiGGGsv~D~ak~vA~~~~--rgip~i~VPT 117 (344)
T cd08169 85 TAIVAVGGGATGDVAGFVASTLF--RGIAFIRVPT 117 (344)
T ss_pred cEEEEECCcHHHHHHHHHHHHhc--cCCcEEEecC
Confidence 34556777655 3444443332 3456666665
No 344
>TIGR03669 urea_ABC_arch urea ABC transporter, substrate-binding protein, archaeal type. Members of this protein family are identified as the substrate-binding protein of a urea ABC transport system by similarity to a known urea transporter from Corynebacterium glutamicum, operon structure, proximity of its operons to urease (urea-utilization protein) operons, and by Partial Phylogenetic Profiling vs. urea utilization.
Probab=26.40 E-value=6.2e+02 Score=24.73 Aligned_cols=139 Identities=13% Similarity=0.078 Sum_probs=66.3
Q ss_pred cCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCC-----CC--cch--hHHHH-HhCCCEEEEECCc-c
Q 019410 119 QGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQD-----PG--LIG--NLLVE-RLVGAHIELISKE-E 187 (341)
Q Consensus 119 ~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~-----~~--~~g--n~~~~-~~~GAeV~~v~~~-~ 187 (341)
.+...|+ |+.+|....+++-.+.+.++..+.--.......... +. ... -...+ +..|.++..+..+ .
T Consensus 67 d~v~~vi--G~~~S~~~~A~~~~~~~~~~~~i~~~~~~~~~~~~~~Fr~~~~~~~~~~~~~~~~~~~~g~~va~l~~d~~ 144 (374)
T TIGR03669 67 DKVDALW--AGYSSATREAIRPIIDRNEQLYFYTNQYEGGVCDEYTFAVGATARQQLGTVVPYMVEEYGKKIYTIAADYN 144 (374)
T ss_pred CCCCEEE--cCCchHHHHHHHHHHHhcCceEEcCcccccccCCCCEEEcCCChHHHHHHHHHHHHHcCCCeEEEEcCCcH
Confidence 4666665 555667788888888889887754210000000000 00 000 01222 3467787666542 2
Q ss_pred ccccCcHHHHHHHHHHHHHhCCCc---EEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHH
Q 019410 188 YSKIGSVTLTNILKEKLLKEGRRP---YVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLS 264 (341)
Q Consensus 188 ~~~~~~~~~~~~~a~~l~~~g~~~---~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~ 264 (341)
|.. ...+...+.+++.|... ..+|.+. .-|.... .++.. ..||.|++.. .|+-...+.
T Consensus 145 ~g~----~~~~~~~~~~~~~G~~vv~~~~~~~g~------~Df~~~l----~~i~~----~~pD~V~~~~-~g~~~~~~~ 205 (374)
T TIGR03669 145 FGQ----LSADWVRVIAKENGAEVVGEEFIPLSV------SQFSSTI----QNIQK----ADPDFVMSML-VGANHASFY 205 (374)
T ss_pred HHH----HHHHHHHHHHHHcCCeEEeEEecCCCc------chHHHHH----HHHHH----cCCCEEEEcC-cCCcHHHHH
Confidence 311 11222233334434221 1223221 1122222 33332 3699998744 344455677
Q ss_pred HHHhcCCCCCeEEE
Q 019410 265 LGSWLGTLKAKVHA 278 (341)
Q Consensus 265 ~~~k~~~~~~rVig 278 (341)
+.++..+.+.++++
T Consensus 206 kq~~~~G~~~~~~~ 219 (374)
T TIGR03669 206 EQAASANLNLPMGT 219 (374)
T ss_pred HHHHHcCCCCcccc
Confidence 88888777777654
No 345
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=26.34 E-value=3.7e+02 Score=25.68 Aligned_cols=57 Identities=23% Similarity=0.103 Sum_probs=36.8
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchh--HHHHHhCCCEEEEECCc
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGN--LLVERLVGAHIELISKE 186 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn--~~~~~~~GAeV~~v~~~ 186 (341)
++|+|++-| -+..++-..|...|.++.+++.++.|.. .|. ...+...|-.+.++.+.
T Consensus 111 ~~ILTh~~S--~tv~~~l~~A~~~gk~~~V~v~EsrP~~------qG~~la~eL~~~GI~vtlI~Ds 169 (275)
T PRK08335 111 DVIITHSFS--SAVLEILKTAKRKGKRFKVILTESAPDY------EGLALANELEFLGIEFEVITDA 169 (275)
T ss_pred CEEEEECCc--HHHHHHHHHHHHcCCceEEEEecCCCch------hHHHHHHHHHHCCCCEEEEecc
Confidence 578888532 2444445567888999999998877632 222 33445568888888753
No 346
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=26.30 E-value=1.7e+02 Score=29.50 Aligned_cols=29 Identities=10% Similarity=0.124 Sum_probs=23.1
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEE
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLI 152 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~iv 152 (341)
++|+..|. |+-|+++|..++.+|.+++++
T Consensus 196 k~VvViG~--G~IG~~vA~~ak~~Ga~ViV~ 224 (406)
T TIGR00936 196 KTVVVAGY--GWCGKGIAMRARGMGARVIVT 224 (406)
T ss_pred CEEEEECC--CHHHHHHHHHHhhCcCEEEEE
Confidence 45666664 899999999999999985554
No 347
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=26.29 E-value=1.9e+02 Score=24.95 Aligned_cols=49 Identities=18% Similarity=0.090 Sum_probs=34.7
Q ss_pred eEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEEC
Q 019410 123 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 184 (341)
Q Consensus 123 ~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~ 184 (341)
.|+..|+ ||-|.+.|.++..+|.+.+++-. . ..++...+.+++..+.++
T Consensus 22 ~vvv~G~--G~vg~gA~~~~~~lGa~v~~~d~-~----------~~~~~~~~~~~~~~i~~~ 70 (168)
T PF01262_consen 22 KVVVTGA--GRVGQGAAEIAKGLGAEVVVPDE-R----------PERLRQLESLGAYFIEVD 70 (168)
T ss_dssp EEEEEST--SHHHHHHHHHHHHTT-EEEEEES-S----------HHHHHHHHHTTTEESEET
T ss_pred EEEEECC--CHHHHHHHHHHhHCCCEEEeccC-C----------HHHHHhhhcccCceEEEc
Confidence 3444454 89999999999999998766632 1 224667788898877775
No 348
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=26.29 E-value=4.6e+02 Score=23.24 Aligned_cols=35 Identities=11% Similarity=0.078 Sum_probs=25.6
Q ss_pred CCCCEEEEcCCchhHHHHHHHHHhcCCC----CCeEEEEee
Q 019410 245 VKFDDIVVACGSGGTIAGLSLGSWLGTL----KAKVHAFSV 281 (341)
Q Consensus 245 ~~~D~Ivv~vGtGGt~aGl~~~~k~~~~----~~rVigVe~ 281 (341)
..+|+||+ +++..+.|+..++++.+. ++.|+|++-
T Consensus 177 ~~~~ai~~--~~~~~a~~~~~~l~~~g~~~p~~i~vig~d~ 215 (268)
T cd06273 177 PRPTAVIC--GNDVLALGALYEARRLGLSVPEDLSIVGFDD 215 (268)
T ss_pred CCCCEEEE--cChHHHHHHHHHHHHcCCCCCCceEEEecCC
Confidence 35898887 566778899999887653 566777663
No 349
>PRK08226 short chain dehydrogenase; Provisional
Probab=26.08 E-value=2.3e+02 Score=25.46 Aligned_cols=16 Identities=19% Similarity=0.148 Sum_probs=9.0
Q ss_pred HHHHHHHHcCCCeEEE
Q 019410 111 FLMADAVAQGADCIIT 126 (341)
Q Consensus 111 ~ll~~A~~~g~~~vVt 126 (341)
.+.....++|.+.+++
T Consensus 21 ~la~~l~~~G~~Vv~~ 36 (263)
T PRK08226 21 GIARVFARHGANLILL 36 (263)
T ss_pred HHHHHHHHCCCEEEEe
Confidence 3455556678764443
No 350
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=26.08 E-value=2.2e+02 Score=30.93 Aligned_cols=57 Identities=19% Similarity=0.292 Sum_probs=37.5
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCe-EEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEE
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLD-CYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELI 183 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~-~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v 183 (341)
+.||..|| ||.|.-+|..+.++|.+ ++++.+...... +.....+..++..|.++++-
T Consensus 571 k~VvVIGg--G~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~---~~~~~e~~~~~~~GV~i~~~ 628 (752)
T PRK12778 571 KKVAVVGG--GNTAMDSARTAKRLGAERVTIVYRRSEEEM---PARLEEVKHAKEEGIEFLTL 628 (752)
T ss_pred CcEEEECC--cHHHHHHHHHHHHcCCCeEEEeeecCcccC---CCCHHHHHHHHHcCCEEEec
Confidence 45666676 89999999999999998 888776432110 11112244567788887643
No 351
>PRK05599 hypothetical protein; Provisional
Probab=26.06 E-value=3.4e+02 Score=24.42 Aligned_cols=28 Identities=29% Similarity=0.273 Sum_probs=18.8
Q ss_pred EEEeCCCcchHHHHHHHHHHHcCCeEEEEEc
Q 019410 124 IITIGGIQSNHCRAAAVAAKYLNLDCYLILR 154 (341)
Q Consensus 124 vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp 154 (341)
+|| |+ ++.-|.++|..-. .|.+++++-+
T Consensus 4 lIt-Ga-s~GIG~aia~~l~-~g~~Vil~~r 31 (246)
T PRK05599 4 LIL-GG-TSDIAGEIATLLC-HGEDVVLAAR 31 (246)
T ss_pred EEE-eC-ccHHHHHHHHHHh-CCCEEEEEeC
Confidence 444 54 3678888888776 4877766654
No 352
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=26.02 E-value=5e+02 Score=23.55 Aligned_cols=91 Identities=16% Similarity=0.199 Sum_probs=56.5
Q ss_pred HHHHHHcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCccccccC
Q 019410 113 MADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIG 192 (341)
Q Consensus 113 l~~A~~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~ 192 (341)
+++|.+.|.+=+|+- +.-..+..+|++.|+. ++|.... ...+.....+|++++.+=...- .+
T Consensus 69 a~~ai~aGA~FivSP-----~~~~~vi~~a~~~~i~---~iPG~~T--------ptEi~~A~~~Ga~~vK~FPa~~--~G 130 (201)
T PRK06015 69 FEDAAKAGSRFIVSP-----GTTQELLAAANDSDVP---LLPGAAT--------PSEVMALREEGYTVLKFFPAEQ--AG 130 (201)
T ss_pred HHHHHHcCCCEEECC-----CCCHHHHHHHHHcCCC---EeCCCCC--------HHHHHHHHHCCCCEEEECCchh--hC
Confidence 566788899988864 3567889999999974 5676552 1237777889999876643211 01
Q ss_pred cHHHHHHHHHHHHHhCCCcEEeCCCCCchhHHH
Q 019410 193 SVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTW 225 (341)
Q Consensus 193 ~~~~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~ 225 (341)
-..++..+ +.--++.-++|.||-++.+..
T Consensus 131 G~~yikal----~~plp~~~l~ptGGV~~~n~~ 159 (201)
T PRK06015 131 GAAFLKAL----SSPLAGTFFCPTGGISLKNAR 159 (201)
T ss_pred CHHHHHHH----HhhCCCCcEEecCCCCHHHHH
Confidence 12344333 221134556788887776543
No 353
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=25.99 E-value=2.2e+02 Score=27.57 Aligned_cols=57 Identities=19% Similarity=0.108 Sum_probs=37.6
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcch--hHHHHHhCCCEEEEECCc
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIG--NLLVERLVGAHIELISKE 186 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~g--n~~~~~~~GAeV~~v~~~ 186 (341)
++|+|+|- |.+..++-..|.+.|-++.|++.+..|.. .| ....+...|-++.++.+.
T Consensus 122 ~~ILT~~~--S~tv~~~l~~A~~~~k~~~V~v~EsrP~~------~G~~~a~~L~~~GI~vtlI~Ds 180 (310)
T PRK08535 122 DVIMTHCN--SSAALSVIKTAHEQGKDIEVIATETRPRN------QGHITAKELAEYGIPVTLIVDS 180 (310)
T ss_pred CEEEEeCC--cHHHHHHHHHHHHCCCeEEEEEecCCchh------hHHHHHHHHHHCCCCEEEEehh
Confidence 57888863 23444445667778888999988877632 23 234555678888888753
No 354
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=25.99 E-value=1.7e+02 Score=25.45 Aligned_cols=33 Identities=15% Similarity=-0.001 Sum_probs=22.7
Q ss_pred CEEEEcCCchhHHHHHHHHHhcCCCCCeEEEEeeCC
Q 019410 248 DDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCD 283 (341)
Q Consensus 248 D~Ivv~vGtGGt~aGl~~~~k~~~~~~rVigVe~~g 283 (341)
..+-+++|+|+...-++.. ..+..+|++||...
T Consensus 35 ~VLDiG~GtG~~~~~l~~~---~~~~~~v~~vDis~ 67 (188)
T TIGR00438 35 TVLDLGAAPGGWSQVAVEQ---VGGKGRVIAVDLQP 67 (188)
T ss_pred EEEEecCCCCHHHHHHHHH---hCCCceEEEEeccc
Confidence 4678888888865544332 23456899999876
No 355
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=25.94 E-value=2.2e+02 Score=32.09 Aligned_cols=33 Identities=30% Similarity=0.411 Sum_probs=27.3
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCC
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTS 156 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~ 156 (341)
+.||..|| ||.|.-+|..+.++|-+++++.+..
T Consensus 448 k~VvVIGG--G~tA~D~A~ta~R~Ga~Vtlv~rr~ 480 (944)
T PRK12779 448 KEVFVIGG--GNTAMDAARTAKRLGGNVTIVYRRT 480 (944)
T ss_pred CEEEEECC--CHHHHHHHHHHHHcCCEEEEEEecC
Confidence 45666776 8999999999999999988887653
No 356
>PLN02743 nicotinamidase
Probab=25.92 E-value=1.3e+02 Score=27.95 Aligned_cols=41 Identities=22% Similarity=0.373 Sum_probs=32.2
Q ss_pred HHHcCCCeEEEeCCCcchHHH----HHHHHHHHcCC-----eEEEEEcCCC
Q 019410 116 AVAQGADCIITIGGIQSNHCR----AAAVAAKYLNL-----DCYLILRTSK 157 (341)
Q Consensus 116 A~~~g~~~vVt~G~s~GNhg~----AlA~aa~~~Gl-----~~~ivvp~~~ 157 (341)
.++.|.++||.+| ...|.|. +.|..|..+|+ +++++-+...
T Consensus 146 Lr~~gI~~liv~G-v~T~~CV~~~~sTardA~~~Gy~~~~~~V~Vv~DA~a 195 (239)
T PLN02743 146 VNNNKIKVILVVG-ICTDICVLDFVASALSARNHGILPPLEDVVVYSRGCA 195 (239)
T ss_pred HHHCCCCEEEEEE-eCcchhccChHHHHHHHHHcCCCCCCceEEEeCCccc
Confidence 3567899998764 6789999 89999999999 6776665443
No 357
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=25.90 E-value=1.6e+02 Score=28.96 Aligned_cols=49 Identities=14% Similarity=0.078 Sum_probs=34.1
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEE
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 182 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~ 182 (341)
++|+..|+ .|.-|.+++..|+.+|.+.+++.+.. .+...++.+|++.++
T Consensus 191 ~~vlV~Ga-~g~vG~~ai~~ak~~G~~vi~~~~~~-----------~~~~~~~~~g~~~~v 239 (398)
T TIGR01751 191 DNVLIWGA-AGGLGSYATQLARAGGGNPVAVVSSP-----------EKAEYCRELGAEAVI 239 (398)
T ss_pred CEEEEEcC-CcHHHHHHHHHHHHcCCeEEEEcCCH-----------HHHHHHHHcCCCEEe
Confidence 45555553 57899999999999999875553321 246677789986554
No 358
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=25.83 E-value=6.5e+02 Score=24.81 Aligned_cols=96 Identities=21% Similarity=0.199 Sum_probs=52.6
Q ss_pred hHHHHHhCCCEEEEECCcccccc-----CcHHHHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCC
Q 019410 169 NLLVERLVGAHIELISKEEYSKI-----GSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTG 243 (341)
Q Consensus 169 n~~~~~~~GAeV~~v~~~~~~~~-----~~~~~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~ 243 (341)
++...-.+||+.++++...|-.. ...+-+++..+...+.|.+.|+.- |.....+-.....+.++++.+
T Consensus 18 ~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~----N~~~~~~~~~~~~~~l~~l~e--- 90 (347)
T COG0826 18 DLKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAV----NTLLHNDELETLERYLDRLVE--- 90 (347)
T ss_pred HHHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEe----ccccccchhhHHHHHHHHHHH---
Confidence 34455568999999874322111 111223444544445564445432 222222222224555666654
Q ss_pred CCCCCEEEEcCCchhHHHHHHHHHhcCCCCCeEEE
Q 019410 244 GVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHA 278 (341)
Q Consensus 244 g~~~D~Ivv~vGtGGt~aGl~~~~k~~~~~~rVig 278 (341)
..+|.|+++= .|+....++.+|+.+||+
T Consensus 91 -~GvDaviv~D------pg~i~l~~e~~p~l~ih~ 118 (347)
T COG0826 91 -LGVDAVIVAD------PGLIMLARERGPDLPIHV 118 (347)
T ss_pred -cCCCEEEEcC------HHHHHHHHHhCCCCcEEE
Confidence 3589999843 456677788889998885
No 359
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=25.76 E-value=4.5e+02 Score=24.86 Aligned_cols=26 Identities=4% Similarity=0.017 Sum_probs=13.3
Q ss_pred HHHHHHHHHhc-CCCCCeEEEEeeCCC
Q 019410 259 TIAGLSLGSWL-GTLKAKVHAFSVCDD 284 (341)
Q Consensus 259 t~aGl~~~~k~-~~~~~rVigVe~~g~ 284 (341)
++..++++.+. +...-.|+...=.|+
T Consensus 122 S~~~lak~a~~lM~~ggSiltLtYlgs 148 (259)
T COG0623 122 SFTALAKAARPLMNNGGSILTLTYLGS 148 (259)
T ss_pred hHHHHHHHHHHhcCCCCcEEEEEeccc
Confidence 34556665553 344455665554444
No 360
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=25.69 E-value=2e+02 Score=25.45 Aligned_cols=47 Identities=21% Similarity=0.203 Sum_probs=30.3
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEE
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIE 181 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~ 181 (341)
++|+..|+ .+ .|++++..++.+|.+.+++.+.. .+...++.+|++.+
T Consensus 136 ~~vli~g~-~~-~G~~~~~~a~~~g~~v~~~~~~~-----------~~~~~~~~~g~~~~ 182 (271)
T cd05188 136 DTVLVLGA-GG-VGLLAAQLAKAAGARVIVTDRSD-----------EKLELAKELGADHV 182 (271)
T ss_pred CEEEEECC-CH-HHHHHHHHHHHcCCeEEEEcCCH-----------HHHHHHHHhCCcee
Confidence 34544554 35 99999999999997766664421 13555677776543
No 361
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=25.67 E-value=4.5e+02 Score=23.62 Aligned_cols=70 Identities=13% Similarity=0.045 Sum_probs=39.2
Q ss_pred HHHHHhCCCEEEEECCccccccCcHHHHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCE
Q 019410 170 LLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDD 249 (341)
Q Consensus 170 ~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~ 249 (341)
.+.+...|++|+.+.+.. . +...+++.+.+.+..++..+-.++.. ...+..++.++. +++|.
T Consensus 25 a~~l~~~G~~vv~~~~~~-----~----~~~~~~~~~~~~~~~~~~~Dl~~~~~---~~~~~~~~~~~~------g~iD~ 86 (251)
T PRK12481 25 AIGLAKAGADIVGVGVAE-----A----PETQAQVEALGRKFHFITADLIQQKD---IDSIVSQAVEVM------GHIDI 86 (251)
T ss_pred HHHHHHCCCEEEEecCch-----H----HHHHHHHHHcCCeEEEEEeCCCCHHH---HHHHHHHHHHHc------CCCCE
Confidence 344556899999886421 0 11223333333344555555444443 334555666654 36999
Q ss_pred EEEcCCch
Q 019410 250 IVVACGSG 257 (341)
Q Consensus 250 Ivv~vGtG 257 (341)
+|..+|.+
T Consensus 87 lv~~ag~~ 94 (251)
T PRK12481 87 LINNAGII 94 (251)
T ss_pred EEECCCcC
Confidence 99998854
No 362
>PRK06194 hypothetical protein; Provisional
Probab=25.67 E-value=4.7e+02 Score=23.83 Aligned_cols=73 Identities=10% Similarity=0.091 Sum_probs=0.0
Q ss_pred HHHHHhCCCEEEEECCccccccCcHHHHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCE
Q 019410 170 LLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDD 249 (341)
Q Consensus 170 ~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~ 249 (341)
.+.+...|++|+.+++.. +..++..+++...+.+..++..+-.++.. ...+..++.++.+ .+|.
T Consensus 23 a~~l~~~G~~V~~~~r~~-------~~~~~~~~~~~~~~~~~~~~~~D~~d~~~---~~~~~~~~~~~~g------~id~ 86 (287)
T PRK06194 23 ARIGAALGMKLVLADVQQ-------DALDRAVAELRAQGAEVLGVRTDVSDAAQ---VEALADAALERFG------AVHL 86 (287)
T ss_pred HHHHHHCCCEEEEEeCCh-------HHHHHHHHHHHhcCCeEEEEECCCCCHHH---HHHHHHHHHHHcC------CCCE
Q ss_pred EEEcCCchh
Q 019410 250 IVVACGSGG 258 (341)
Q Consensus 250 Ivv~vGtGG 258 (341)
||..+|...
T Consensus 87 vi~~Ag~~~ 95 (287)
T PRK06194 87 LFNNAGVGA 95 (287)
T ss_pred EEECCCCCC
No 363
>PRK13018 cell division protein FtsZ; Provisional
Probab=25.62 E-value=1.7e+02 Score=29.22 Aligned_cols=47 Identities=26% Similarity=0.148 Sum_probs=26.9
Q ss_pred HHHHHHHhcCCCCCCCCEEEEcCC-chhHHHHHHHH----HhcCCCCCeEEEEeeCCCCc
Q 019410 232 KEIEQQLQTGTGGVKFDDIVVACG-SGGTIAGLSLG----SWLGTLKAKVHAFSVCDDPD 286 (341)
Q Consensus 232 ~EI~~Ql~~~~~g~~~D~Ivv~vG-tGGt~aGl~~~----~k~~~~~~rVigVe~~g~~~ 286 (341)
.||.+++. ..|.||+.+| +|||=+|.+-. .++.+ ..+++|-+.+-..
T Consensus 104 d~I~~~le------~~D~vfI~aGLGGGTGSGaapvIa~iake~g--~ltv~vVt~Pf~~ 155 (378)
T PRK13018 104 DEIKEVLK------GADLVFVTAGMGGGTGTGAAPVVAEIAKEQG--ALVVGVVTKPFKF 155 (378)
T ss_pred HHHHHHhc------CCCEEEEEeeccCcchhhHHHHHHHHHHHcC--CCeEEEEEcCccc
Confidence 44555553 4788888877 44555555533 34433 5677776666443
No 364
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=25.58 E-value=2.4e+02 Score=27.52 Aligned_cols=60 Identities=18% Similarity=0.185 Sum_probs=39.6
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchh-HHHHHhCCCEEEEECC
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGN-LLVERLVGAHIELISK 185 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn-~~~~~~~GAeV~~v~~ 185 (341)
.+++-.|-. .|.+.++-.+|+++|+.+.+..|..-.. ++..... .+..+..|++|.++.+
T Consensus 154 ~k~a~vGDg-NNv~nSl~~~~a~~G~dv~ia~Pk~~~p---~~~~~~~a~~~a~~~g~~i~~t~d 214 (310)
T COG0078 154 LKLAYVGDG-NNVANSLLLAAAKLGMDVRIATPKGYEP---DPEVVEKAKENAKESGGKITLTED 214 (310)
T ss_pred cEEEEEcCc-chHHHHHHHHHHHhCCeEEEECCCcCCc---CHHHHHHHHHHHHhcCCeEEEecC
Confidence 455555533 7999999999999999999999976521 1111111 1223445888888764
No 365
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=25.53 E-value=5.2e+02 Score=23.59 Aligned_cols=91 Identities=20% Similarity=0.189 Sum_probs=43.0
Q ss_pred CCCcchHHHHHHHHHHHcCC--eEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCccccccCcHHHHHHHHHHHH
Q 019410 128 GGIQSNHCRAAAVAAKYLNL--DCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLL 205 (341)
Q Consensus 128 G~s~GNhg~AlA~aa~~~Gl--~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~a~~l~ 205 (341)
+|+.|| .+|++-+|+.-.+ +...|+.++.. ..-+...+.+|-....++...|.. +.++-+++.+.+.
T Consensus 8 SG~GSN-lqaiida~~~~~~~a~i~~Visd~~~--------A~~lerA~~~gIpt~~~~~k~~~~--r~~~d~~l~~~l~ 76 (200)
T COG0299 8 SGNGSN-LQAIIDAIKGGKLDAEIVAVISDKAD--------AYALERAAKAGIPTVVLDRKEFPS--REAFDRALVEALD 76 (200)
T ss_pred eCCccc-HHHHHHHHhcCCCCcEEEEEEeCCCC--------CHHHHHHHHcCCCEEEeccccCCC--HHHHHHHHHHHHH
Confidence 344444 3666666663322 34444443321 113566666776655555444532 2333344555555
Q ss_pred HhCCCcEEeCCCCCchhHHHHHHH-HHHHHHHHHh
Q 019410 206 KEGRRPYVIPVGGSNSIGTWGYIE-AIKEIEQQLQ 239 (341)
Q Consensus 206 ~~g~~~~~ip~g~~n~~~~~G~~t-~a~EI~~Ql~ 239 (341)
+.+.. +++ ..||+. ++.++.++..
T Consensus 77 ~~~~d-lvv---------LAGyMrIL~~~fl~~~~ 101 (200)
T COG0299 77 EYGPD-LVV---------LAGYMRILGPEFLSRFE 101 (200)
T ss_pred hcCCC-EEE---------EcchHHHcCHHHHHHhh
Confidence 43322 222 235554 3566666654
No 366
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=25.45 E-value=1.4e+02 Score=27.16 Aligned_cols=43 Identities=21% Similarity=0.211 Sum_probs=33.0
Q ss_pred EEEEcCCchhHHHHHHHHHhcCCCCCeEEEEeeCCCCccchHh
Q 019410 249 DIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDY 291 (341)
Q Consensus 249 ~Ivv~vGtGGt~aGl~~~~k~~~~~~rVigVe~~g~~~~~~~~ 291 (341)
.+|+.+|+|+.+..+..+.+....+.+|.+|-...+..+..++
T Consensus 3 i~VlaSG~GSNlqaiida~~~~~~~a~i~~Visd~~~A~~ler 45 (200)
T COG0299 3 IAVLASGNGSNLQAIIDAIKGGKLDAEIVAVISDKADAYALER 45 (200)
T ss_pred EEEEEeCCcccHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHH
Confidence 4688899999999999999865557788888777666655443
No 367
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=25.40 E-value=4.9e+02 Score=23.28 Aligned_cols=47 Identities=21% Similarity=0.174 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcC
Q 019410 108 KLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 155 (341)
Q Consensus 108 kl~~ll~~A~~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~ 155 (341)
.....+..+..++.+.||..+ ...+........+...|++++++-+.
T Consensus 43 ~~~~~i~~l~~~~vdgiIi~~-~~~~~~~~~i~~~~~~~iPvV~~~~~ 89 (273)
T cd06309 43 NQISAIRSFIAQGVDVIILAP-VVETGWDPVLKEAKAAGIPVILVDRG 89 (273)
T ss_pred HHHHHHHHHHHcCCCEEEEcC-CccccchHHHHHHHHCCCCEEEEecC
Confidence 334556667778899998653 33343233334567889999988653
No 368
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=25.38 E-value=2.5e+02 Score=26.40 Aligned_cols=49 Identities=18% Similarity=0.164 Sum_probs=33.4
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEE
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 182 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~ 182 (341)
+.|+..|+ .+..|.+++..|+.+|++.+++.+.. .+...++.+|++-++
T Consensus 167 ~~vlV~g~-~~~vg~~~~~~a~~~g~~v~~~~~~~-----------~~~~~~~~~g~~~v~ 215 (341)
T cd08297 167 DWVVISGA-GGGLGHLGVQYAKAMGLRVIAIDVGD-----------EKLELAKELGADAFV 215 (341)
T ss_pred CEEEEECC-CchHHHHHHHHHHHCCCeEEEEeCCH-----------HHHHHHHHcCCcEEE
Confidence 55665554 46799999999999999866664432 135566778876443
No 369
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=25.37 E-value=4.7e+02 Score=27.30 Aligned_cols=57 Identities=11% Similarity=0.068 Sum_probs=32.9
Q ss_pred CCeEEEeCCCcchHHHHHHHHHHHc---------------------CC-eEEEEEcCCCCCcCCCCCcchhHHHHHhCCC
Q 019410 121 ADCIITIGGIQSNHCRAAAVAAKYL---------------------NL-DCYLILRTSKVLVDQDPGLIGNLLVERLVGA 178 (341)
Q Consensus 121 ~~~vVt~G~s~GNhg~AlA~aa~~~---------------------Gl-~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GA 178 (341)
..+++|.|||.+|...-+++--+.+ |. +.+|++++... ....+..+.+|.
T Consensus 160 ~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~v~~S~~~H--------~S~~kaa~~lgl 231 (522)
T TIGR03799 160 SLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFAALKHYGYDGLAILVSERGH--------YSLGKAADVLGI 231 (522)
T ss_pred CCeEEcCchHHHHHHHHHHHHHHhccccccccccccccchhhhhhccCCceEEEECCCch--------HHHHHHHHHcCC
Confidence 3468888999888764433322221 11 45677765542 224556677776
Q ss_pred ---EEEEECC
Q 019410 179 ---HIELISK 185 (341)
Q Consensus 179 ---eV~~v~~ 185 (341)
+|+.++-
T Consensus 232 g~~~v~~vp~ 241 (522)
T TIGR03799 232 GRDNLIAIKT 241 (522)
T ss_pred CcccEEEEEe
Confidence 6776653
No 370
>CHL00194 ycf39 Ycf39; Provisional
Probab=25.35 E-value=1.9e+02 Score=27.34 Aligned_cols=31 Identities=13% Similarity=0.111 Sum_probs=24.9
Q ss_pred EEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCC
Q 019410 124 IITIGGIQSNHCRAAAVAAKYLNLDCYLILRTS 156 (341)
Q Consensus 124 vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~ 156 (341)
+|| | .+|.-|..++......|++++++.+..
T Consensus 4 lVt-G-atG~iG~~lv~~Ll~~g~~V~~l~R~~ 34 (317)
T CHL00194 4 LVI-G-ATGTLGRQIVRQALDEGYQVRCLVRNL 34 (317)
T ss_pred EEE-C-CCcHHHHHHHHHHHHCCCeEEEEEcCh
Confidence 444 4 458999999999999999999888753
No 371
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=25.31 E-value=2.6e+02 Score=26.50 Aligned_cols=48 Identities=17% Similarity=0.230 Sum_probs=33.2
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEE
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIE 181 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~ 181 (341)
+.|+..|+ |-.|.+++..|+.+|.+.++++.... .+...++.+|++.+
T Consensus 177 ~~vlI~g~--g~vg~~~~~~a~~~G~~~v~~~~~~~----------~~~~~~~~~g~~~~ 224 (350)
T cd08240 177 EPVVIIGA--GGLGLMALALLKALGPANIIVVDIDE----------AKLEAAKAAGADVV 224 (350)
T ss_pred CEEEEECC--cHHHHHHHHHHHHcCCCeEEEEeCCH----------HHHHHHHHhCCcEE
Confidence 55665653 78999999999999997655554321 24666778898643
No 372
>PRK06172 short chain dehydrogenase; Provisional
Probab=25.26 E-value=4.9e+02 Score=23.15 Aligned_cols=70 Identities=9% Similarity=0.082 Sum_probs=0.0
Q ss_pred HHHHHhCCCEEEEECCccccccCcHHHHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCE
Q 019410 170 LLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDD 249 (341)
Q Consensus 170 ~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~ 249 (341)
...+...|++|+.+.+.. +..++..+++.+.+.+..++..+-.++.. ...+..++.++++ ++|.
T Consensus 24 a~~l~~~G~~v~~~~r~~-------~~~~~~~~~~~~~~~~~~~~~~D~~~~~~---i~~~~~~~~~~~g------~id~ 87 (253)
T PRK06172 24 ALAFAREGAKVVVADRDA-------AGGEETVALIREAGGEALFVACDVTRDAE---VKALVEQTIAAYG------RLDY 87 (253)
T ss_pred HHHHHHcCCEEEEEeCCH-------HHHHHHHHHHHhcCCceEEEEcCCCCHHH---HHHHHHHHHHHhC------CCCE
Q ss_pred EEEcCC
Q 019410 250 IVVACG 255 (341)
Q Consensus 250 Ivv~vG 255 (341)
||..+|
T Consensus 88 li~~ag 93 (253)
T PRK06172 88 AFNNAG 93 (253)
T ss_pred EEECCC
No 373
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=25.21 E-value=5.7e+02 Score=24.33 Aligned_cols=46 Identities=11% Similarity=0.107 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcCCCCCeEEEEeeC
Q 019410 229 EAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVC 282 (341)
Q Consensus 229 t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~~~~~rVigVe~~ 282 (341)
.++.++.+.+.. .++|+| +++.++|...+.+.+..+ +.+++-|.-.
T Consensus 115 ~ig~~la~~~~~----~~iD~V-vgvetkGIpLA~avA~~L---~vp~vivRK~ 160 (268)
T TIGR01743 115 KIGKILASVFAE----REIDAV-MTVATKGIPLAYAVASVL---NVPLVIVRKD 160 (268)
T ss_pred HHHHHHHHHhcC----CCCCEE-EEEccchHHHHHHHHHHH---CCCEEEEEEC
Confidence 456677766642 468865 557777777777666664 3445555443
No 374
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=25.19 E-value=4.8e+02 Score=23.09 Aligned_cols=35 Identities=14% Similarity=-0.059 Sum_probs=26.1
Q ss_pred CCCCEEEEcCCchhHHHHHHHHHhcCCC----CCeEEEEee
Q 019410 245 VKFDDIVVACGSGGTIAGLSLGSWLGTL----KAKVHAFSV 281 (341)
Q Consensus 245 ~~~D~Ivv~vGtGGt~aGl~~~~k~~~~----~~rVigVe~ 281 (341)
.++|+||+ .++..+.|+..++++.+. ++.|+|++-
T Consensus 182 ~~~~ai~~--~~d~~a~g~~~al~~~g~~iP~dv~vig~d~ 220 (270)
T cd06294 182 PRPTAIVA--TDDLLALGVLKVLNELGLKVPEDLSIIGFNN 220 (270)
T ss_pred CCCCEEEE--CChHHHHHHHHHHHHcCCCCCcceEEEeeCC
Confidence 36899887 456778899999988774 567777654
No 375
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=25.12 E-value=3.2e+02 Score=24.69 Aligned_cols=92 Identities=16% Similarity=0.114 Sum_probs=52.6
Q ss_pred HHHHHHHcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECC-ccccc
Q 019410 112 LMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISK-EEYSK 190 (341)
Q Consensus 112 ll~~A~~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~-~~~~~ 190 (341)
.++.|.+.|++=+|+- |.-..+...|+++|+.+ +|.... ...+.....+|++++.+=. +.+
T Consensus 72 ~a~~a~~aGA~FivSP-----~~~~~v~~~~~~~~i~~---iPG~~T--------ptEi~~A~~~G~~~vK~FPA~~~-- 133 (196)
T PF01081_consen 72 QAEAAIAAGAQFIVSP-----GFDPEVIEYAREYGIPY---IPGVMT--------PTEIMQALEAGADIVKLFPAGAL-- 133 (196)
T ss_dssp HHHHHHHHT-SEEEES-----S--HHHHHHHHHHTSEE---EEEESS--------HHHHHHHHHTT-SEEEETTTTTT--
T ss_pred HHHHHHHcCCCEEECC-----CCCHHHHHHHHHcCCcc---cCCcCC--------HHHHHHHHHCCCCEEEEecchhc--
Confidence 3566778899988874 46688999999999854 454331 1236777789999877643 222
Q ss_pred cCcHHHHHHHHHHHHHhCCCcEEeCCCCCchhHHHH
Q 019410 191 IGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWG 226 (341)
Q Consensus 191 ~~~~~~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G 226 (341)
+-..++.. +..--+..-++|.||-++.+...
T Consensus 134 -GG~~~ik~----l~~p~p~~~~~ptGGV~~~N~~~ 164 (196)
T PF01081_consen 134 -GGPSYIKA----LRGPFPDLPFMPTGGVNPDNLAE 164 (196)
T ss_dssp -THHHHHHH----HHTTTTT-EEEEBSS--TTTHHH
T ss_pred -CcHHHHHH----HhccCCCCeEEEcCCCCHHHHHH
Confidence 11234333 33211345678999877766443
No 376
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=25.05 E-value=5e+02 Score=23.55 Aligned_cols=71 Identities=10% Similarity=0.151 Sum_probs=39.0
Q ss_pred HHHHHhCCCEEEEECCccccccCcHHHHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCE
Q 019410 170 LLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDD 249 (341)
Q Consensus 170 ~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~ 249 (341)
.+.+...|++|+.+.+.. +..+.+.+++...+.+..+++.+-.++... ..+..++.+++ +.+|.
T Consensus 27 a~~l~~~G~~V~~~~r~~-------~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v---~~~~~~~~~~~------g~id~ 90 (278)
T PRK08277 27 AKELARAGAKVAILDRNQ-------EKAEAVVAEIKAAGGEALAVKADVLDKESL---EQARQQILEDF------GPCDI 90 (278)
T ss_pred HHHHHHCCCEEEEEeCCH-------HHHHHHHHHHHhcCCeEEEEECCCCCHHHH---HHHHHHHHHHc------CCCCE
Confidence 344445799999887632 112344445544333344455444444332 23445555554 36999
Q ss_pred EEEcCCc
Q 019410 250 IVVACGS 256 (341)
Q Consensus 250 Ivv~vGt 256 (341)
||..+|.
T Consensus 91 li~~ag~ 97 (278)
T PRK08277 91 LINGAGG 97 (278)
T ss_pred EEECCCC
Confidence 9999884
No 377
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=25.01 E-value=1.1e+02 Score=26.55 Aligned_cols=33 Identities=21% Similarity=0.308 Sum_probs=26.0
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCC
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTS 156 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~ 156 (341)
+.|+..|+ ||.+.-+|......|-+++++++..
T Consensus 168 k~V~VVG~--G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 168 KRVVVVGG--GNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp SEEEEE----SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred CcEEEEcC--hHHHHHHHHHHHhhCCEEEEEecCC
Confidence 56666776 7999999999999999999998753
No 378
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=24.97 E-value=2.1e+02 Score=26.67 Aligned_cols=47 Identities=19% Similarity=0.155 Sum_probs=31.6
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEE
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIE 181 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~ 181 (341)
++|+..| + |-.|.+++..|+.+|.+.+++.. . ..+...++.+|++.+
T Consensus 157 ~~vlV~g-~-g~vg~~~~q~a~~~G~~vi~~~~-~----------~~~~~~~~~~g~~~~ 203 (319)
T cd08242 157 DKVAVLG-D-GKLGLLIAQVLALTGPDVVLVGR-H----------SEKLALARRLGVETV 203 (319)
T ss_pred CEEEEEC-C-CHHHHHHHHHHHHcCCeEEEEcC-C----------HHHHHHHHHcCCcEE
Confidence 4555555 3 78999999999999999444422 2 124667777898643
No 379
>PRK06181 short chain dehydrogenase; Provisional
Probab=24.95 E-value=4.9e+02 Score=23.29 Aligned_cols=53 Identities=23% Similarity=0.125 Sum_probs=32.7
Q ss_pred EEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECC
Q 019410 124 IITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISK 185 (341)
Q Consensus 124 vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~ 185 (341)
+|| |+ +|.-|.++|......|.+++++.+..... ......++..|.++..+..
T Consensus 5 lVt-Ga-sg~iG~~la~~l~~~g~~Vi~~~r~~~~~-------~~~~~~l~~~~~~~~~~~~ 57 (263)
T PRK06181 5 IIT-GA-SEGIGRALAVRLARAGAQLVLAARNETRL-------ASLAQELADHGGEALVVPT 57 (263)
T ss_pred EEe-cC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHH-------HHHHHHHHhcCCcEEEEEc
Confidence 444 44 47899999999999999877776532110 1113334456777766543
No 380
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=24.93 E-value=1e+02 Score=28.74 Aligned_cols=32 Identities=25% Similarity=0.299 Sum_probs=23.8
Q ss_pred EEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCC
Q 019410 124 IITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSK 157 (341)
Q Consensus 124 vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~ 157 (341)
|+..|| |=.|.++|.+.++.|++++||=....
T Consensus 4 V~IvGa--G~aGl~~A~~L~~~G~~v~i~E~~~~ 35 (356)
T PF01494_consen 4 VAIVGA--GPAGLAAALALARAGIDVTIIERRPD 35 (356)
T ss_dssp EEEE----SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred EEEECC--CHHHHHHHHHHHhcccccccchhccc
Confidence 333465 67899999999999999888865444
No 381
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=24.93 E-value=94 Score=32.01 Aligned_cols=32 Identities=25% Similarity=0.235 Sum_probs=25.1
Q ss_pred CCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcC
Q 019410 121 ADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 155 (341)
Q Consensus 121 ~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~ 155 (341)
.+.|| .|| |-.|.++|+.+++.|+++.++=..
T Consensus 7 ~DVvI-IGG--Gi~G~~~A~~la~rGl~V~LvEk~ 38 (508)
T PRK12266 7 YDLLV-IGG--GINGAGIARDAAGRGLSVLLCEQD 38 (508)
T ss_pred CCEEE-ECc--CHHHHHHHHHHHHCCCeEEEEecC
Confidence 35455 566 789999999999999998777543
No 382
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=24.80 E-value=2.1e+02 Score=27.55 Aligned_cols=49 Identities=12% Similarity=0.032 Sum_probs=33.5
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEE
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 182 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~ 182 (341)
++|+..|+ |--|.+++..|+.+|.+-++++... ..+...++.+|++-++
T Consensus 186 ~~vlV~G~--g~vG~~~~~~a~~~G~~~Vi~~~~~----------~~~~~~~~~~ga~~~i 234 (365)
T cd08277 186 STVAVFGL--GAVGLSAIMGAKIAGASRIIGVDIN----------EDKFEKAKEFGATDFI 234 (365)
T ss_pred CEEEEECC--CHHHHHHHHHHHHcCCCeEEEEeCC----------HHHHHHHHHcCCCcEe
Confidence 45555553 7899999999999999544444322 1257778889986443
No 383
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=24.79 E-value=5e+02 Score=23.10 Aligned_cols=35 Identities=11% Similarity=0.105 Sum_probs=26.3
Q ss_pred CCCCEEEEcCCchhHHHHHHHHHhcCC----CCCeEEEEee
Q 019410 245 VKFDDIVVACGSGGTIAGLSLGSWLGT----LKAKVHAFSV 281 (341)
Q Consensus 245 ~~~D~Ivv~vGtGGt~aGl~~~~k~~~----~~~rVigVe~ 281 (341)
.++++||+ .+..++.|+..++++.+ .++.|+|++-
T Consensus 171 ~~~~ai~~--~~d~~a~g~~~~l~~~g~~~p~di~iig~d~ 209 (263)
T cd06280 171 ERPEALVA--SNGLLLLGALRAVRAAGLRIPQDLALAGFDN 209 (263)
T ss_pred CCCcEEEE--CCcHHHHHHHHHHHHcCCCCCCcEEEEEeCC
Confidence 36888876 66677889999998876 3667777664
No 384
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=24.69 E-value=7.4e+02 Score=25.06 Aligned_cols=38 Identities=21% Similarity=0.060 Sum_probs=22.0
Q ss_pred cEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCch
Q 019410 211 PYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSG 257 (341)
Q Consensus 211 ~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtG 257 (341)
...++.+-.++.. ...+..++.+++ +.+|.+|-++|.+
T Consensus 105 a~~i~~DVss~E~---v~~lie~I~e~~------G~IDiLVnSaA~~ 142 (398)
T PRK13656 105 AKSINGDAFSDEI---KQKVIELIKQDL------GQVDLVVYSLASP 142 (398)
T ss_pred eEEEEcCCCCHHH---HHHHHHHHHHhc------CCCCEEEECCccC
Confidence 3445544444443 223455565554 3588888888877
No 385
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=24.69 E-value=1.3e+02 Score=32.24 Aligned_cols=38 Identities=29% Similarity=0.388 Sum_probs=29.1
Q ss_pred CCCCEEEEcCCchhHHHHHHHHHhc-CCCCCeEEEEeeCCCCc
Q 019410 245 VKFDDIVVACGSGGTIAGLSLGSWL-GTLKAKVHAFSVCDDPD 286 (341)
Q Consensus 245 ~~~D~Ivv~vGtGGt~aGl~~~~k~-~~~~~rVigVe~~g~~~ 286 (341)
..+|+||+..||.|. +.+.++ ..|+++|.-.|+.|++.
T Consensus 56 ~~yDyIVVGgGtAGc----vlAarLSEn~~~~VLLLEaGg~~~ 94 (623)
T KOG1238|consen 56 SSYDYIVVGGGTAGC----VLAARLSENPNWSVLLLEAGGDPP 94 (623)
T ss_pred cCCCEEEECCCchhH----HHHHhhccCCCceEEEEecCCCCc
Confidence 469999998888664 444443 46889999999988874
No 386
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=24.68 E-value=3.3e+02 Score=25.60 Aligned_cols=47 Identities=19% Similarity=0.151 Sum_probs=31.4
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEE
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHI 180 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV 180 (341)
++|+..| .|.-|++++..|+.+|+..++++... ..+...++.+|+.+
T Consensus 169 ~~vlI~g--~g~vg~~~~~~a~~~g~~~v~~~~~~----------~~~~~~~~~~g~~~ 215 (344)
T cd08284 169 DTVAVIG--CGPVGLCAVLSAQVLGAARVFAVDPV----------PERLERAAALGAEP 215 (344)
T ss_pred CEEEEEC--CcHHHHHHHHHHHHcCCceEEEEcCC----------HHHHHHHHHhCCeE
Confidence 4555454 37899999999999998434444322 12466677799864
No 387
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=24.58 E-value=2.6e+02 Score=26.47 Aligned_cols=48 Identities=17% Similarity=0.056 Sum_probs=32.2
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEE
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 182 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~ 182 (341)
++|+..| .|..|++++..|+.+|++.+++.+.. .+...++.+|++-++
T Consensus 171 ~~vlV~g--~g~vG~~~~~~a~~~G~~v~~~~~~~-----------~~~~~~~~~g~~~vi 218 (337)
T cd05283 171 KRVGVVG--IGGLGHLAVKFAKALGAEVTAFSRSP-----------SKKEDALKLGADEFI 218 (337)
T ss_pred CEEEEEC--CcHHHHHHHHHHHHcCCeEEEEcCCH-----------HHHHHHHHcCCcEEe
Confidence 3444444 37899999999999999765554322 135566778976544
No 388
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=24.55 E-value=5.1e+02 Score=23.16 Aligned_cols=70 Identities=14% Similarity=0.071 Sum_probs=0.0
Q ss_pred HHHHHhCCCEEEEECCccccccCcHHHHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCE
Q 019410 170 LLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDD 249 (341)
Q Consensus 170 ~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~ 249 (341)
.+.+...|++|+.+.+.. +..+...+++...+.+..+++.+-.++..... +..++.++.. .+|.
T Consensus 29 a~~l~~~G~~V~~~~r~~-------~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~---~~~~~~~~~~------~id~ 92 (259)
T PRK08213 29 AEALGEAGARVVLSARKA-------EELEEAAAHLEALGIDALWIAADVADEADIER---LAEETLERFG------HVDI 92 (259)
T ss_pred HHHHHHcCCEEEEEeCCH-------HHHHHHHHHHHhcCCeEEEEEccCCCHHHHHH---HHHHHHHHhC------CCCE
Q ss_pred EEEcCC
Q 019410 250 IVVACG 255 (341)
Q Consensus 250 Ivv~vG 255 (341)
||..+|
T Consensus 93 vi~~ag 98 (259)
T PRK08213 93 LVNNAG 98 (259)
T ss_pred EEECCC
No 389
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=24.55 E-value=2.1e+02 Score=27.31 Aligned_cols=46 Identities=17% Similarity=0.099 Sum_probs=31.0
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEE
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHI 180 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV 180 (341)
++++..|. |+.|+++|..++.+|.+++++-+.. ......+.+|++.
T Consensus 153 ~kvlViG~--G~iG~~~a~~L~~~Ga~V~v~~r~~-----------~~~~~~~~~G~~~ 198 (296)
T PRK08306 153 SNVLVLGF--GRTGMTLARTLKALGANVTVGARKS-----------AHLARITEMGLSP 198 (296)
T ss_pred CEEEEECC--cHHHHHHHHHHHHCCCEEEEEECCH-----------HHHHHHHHcCCee
Confidence 44555564 7899999999999998666664321 1355566788764
No 390
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=24.54 E-value=2.5e+02 Score=27.92 Aligned_cols=49 Identities=14% Similarity=0.025 Sum_probs=30.9
Q ss_pred eEEEeCCCcchHHHHHHHHHHHcC-CeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEEC
Q 019410 123 CIITIGGIQSNHCRAAAVAAKYLN-LDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 184 (341)
Q Consensus 123 ~vVt~G~s~GNhg~AlA~aa~~~G-l~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~ 184 (341)
.+||.|+ .++..+|+.+-.-. =++++..|... .....++..|++++.++
T Consensus 92 iivt~Ga---~~al~~~~~a~~~pGDeVlip~P~Y~----------~y~~~~~~~gg~~v~v~ 141 (393)
T COG0436 92 IIVTAGA---KEALFLAFLALLNPGDEVLIPDPGYP----------SYEAAVKLAGGKPVPVP 141 (393)
T ss_pred EEEeCCH---HHHHHHHHHHhcCCCCEEEEeCCCCc----------CHHHHHHhcCCEEEEEe
Confidence 5677775 56666666555433 33333333332 25778899999999987
No 391
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=24.39 E-value=3.9e+02 Score=25.11 Aligned_cols=51 Identities=18% Similarity=0.137 Sum_probs=26.6
Q ss_pred HHHHHhCCCEEEEECCccccccCcHHHHHHHHHHHHHhCCCcEEeCCCCCchhHH
Q 019410 170 LLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGT 224 (341)
Q Consensus 170 ~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~a~~l~~~g~~~~~ip~g~~n~~~~ 224 (341)
...++.+|.++++++.+. . .+.+ ++.++++.+.- .+.-+++..||+-|...
T Consensus 56 ~~av~~~G~~avmT~~~h-~-SGTd-R~~Ev~~~l~~-~~~~iIVNvQGDeP~i~ 106 (247)
T COG1212 56 AEAVQAFGGEAVMTSKDH-Q-SGTD-RLAEVVEKLGL-PDDEIIVNVQGDEPFIE 106 (247)
T ss_pred HHHHHHhCCEEEecCCCC-C-CccH-HHHHHHHhcCC-CcceEEEEccCCCCCCC
Confidence 556677788888777532 1 1222 22333433321 12347777777666543
No 392
>PLN02827 Alcohol dehydrogenase-like
Probab=24.24 E-value=2.1e+02 Score=27.96 Aligned_cols=49 Identities=10% Similarity=0.026 Sum_probs=33.8
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEE
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 182 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~ 182 (341)
++|+..|+ |--|.+++..|+.+|.+.++++.... .+..+++.+||+-++
T Consensus 195 ~~VlV~G~--G~vG~~~iqlak~~G~~~vi~~~~~~----------~~~~~a~~lGa~~~i 243 (378)
T PLN02827 195 SSVVIFGL--GTVGLSVAQGAKLRGASQIIGVDINP----------EKAEKAKTFGVTDFI 243 (378)
T ss_pred CEEEEECC--CHHHHHHHHHHHHcCCCeEEEECCCH----------HHHHHHHHcCCcEEE
Confidence 45554553 67999999999999987665554321 257778889996443
No 393
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=24.05 E-value=5.3e+02 Score=23.12 Aligned_cols=205 Identities=14% Similarity=0.016 Sum_probs=95.8
Q ss_pred hHHHHHHHHHHHHcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCC--------CcCCCCCcchh--HHHHHh
Q 019410 106 VRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKV--------LVDQDPGLIGN--LLVERL 175 (341)
Q Consensus 106 ~Rkl~~ll~~A~~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~--------~~~~~~~~~gn--~~~~~~ 175 (341)
..+...++..+..++.+.||.... ..+........++..|++++++-....+ ....+....++ ...+..
T Consensus 43 ~~~~~~~i~~l~~~~vdgiii~~~-~~~~~~~~l~~~~~~~ipvV~~~~~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~ 121 (271)
T cd06312 43 VADMARLIEAAIAAKPDGIVVTIP-DPDALDPAIKRAVAAGIPVISFNAGDPKYKELGALAYVGQDEYAAGEAAGERLAE 121 (271)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCC-ChHHhHHHHHHHHHCCCeEEEeCCCCCccccccceEEeccChHHHHHHHHHHHHH
Confidence 344555677777788999887542 2222223334457789998887432111 00000001111 111112
Q ss_pred -CC-CEEEEECC-ccccccCcHHHHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEE
Q 019410 176 -VG-AHIELISK-EEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVV 252 (341)
Q Consensus 176 -~G-AeV~~v~~-~~~~~~~~~~~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv 252 (341)
.| -++.++.. ..+. ....+.+.+.+.+++.+ -.........+.. .+ ...+.+++++. .++|+||+
T Consensus 122 ~~g~~~i~~i~g~~~~~--~~~~r~~g~~~~~~~~~-~~~~~~~~~~~~~--~~-~~~~~~~l~~~------~~~~aI~~ 189 (271)
T cd06312 122 LKGGKNVLCVIHEPGNV--TLEDRCAGFADGLGGAG-ITEEVIETGADPT--EV-ASRIAAYLRAN------PDVDAVLT 189 (271)
T ss_pred hcCCCeEEEEecCCCCc--cHHHHHHHHHHHHHhcC-ceeeEeecCCCHH--HH-HHHHHHHHHhC------CCccEEEE
Confidence 33 24554532 1111 11122333344444322 1111111111211 12 23344444432 35888887
Q ss_pred cCCchhHHHHHHHHHhcCCC--CCeEEEEeeCCCCccchHhHHHHhhcccCCCCCCceEEeccchHHHHHHHHHHHHHhc
Q 019410 253 ACGSGGTIAGLSLGSWLGTL--KAKVHAFSVCDDPDYFYDYTQGLLDGLNAGVDSRDIVNIQNVSVYMTFKNILMNILMN 330 (341)
Q Consensus 253 ~vGtGGt~aGl~~~~k~~~~--~~rVigVe~~g~~~~~~~~i~~l~~~~~~~~~~~~iv~v~d~~~~~~~~~~~~~~~~~ 330 (341)
.. +.++.|+..+++..+. ++.|+|++-... .. +-+..+... ..|...-.......-.++++.+..
T Consensus 190 ~~--d~~a~g~~~al~~~g~~~di~vvg~d~~~~---~~---~~l~~g~~~-----~tv~~~~~~~g~~a~~~l~~~~~~ 256 (271)
T cd06312 190 LG--APSAAPAAKALKQAGLKGKVKLGGFDLSPA---TL---QAIKAGYIQ-----FAIDQQPYLQGYLPVSLLWLYKRY 256 (271)
T ss_pred eC--CccchHHHHHHHhcCCCCCeEEEEecCCHH---HH---HHHhcCceE-----EEEecCchhhhHHHHHHHHHHHhc
Confidence 54 4567788888888764 667777554321 10 112222111 123333345566667778888999
Q ss_pred CCCCCC
Q 019410 331 GKQPTP 336 (341)
Q Consensus 331 ~~~~~~ 336 (341)
||-|+.
T Consensus 257 ~~~~~~ 262 (271)
T cd06312 257 GLLPGS 262 (271)
T ss_pred CCCCCc
Confidence 887753
No 394
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=24.00 E-value=3.7e+02 Score=25.29 Aligned_cols=66 Identities=24% Similarity=0.234 Sum_probs=50.4
Q ss_pred HHHHHHHHHcCCCeEEEeCCCcch-HHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCc
Q 019410 110 EFLMADAVAQGADCIITIGGIQSN-HCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKE 186 (341)
Q Consensus 110 ~~ll~~A~~~g~~~vVt~G~s~GN-hg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~ 186 (341)
.+.+.+|...|++.|+..-+.-+. ....+...|..+|+.+.+=+.+.. -+......||+++-+...
T Consensus 114 ~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGle~LVEVh~~~-----------El~~a~~~ga~iiGINnR 180 (247)
T PRK13957 114 EIQIREARAFGASAILLIVRILTPSQIKSFLKHASSLGMDVLVEVHTED-----------EAKLALDCGAEIIGINTR 180 (247)
T ss_pred HHHHHHHHHcCCCEEEeEHhhCCHHHHHHHHHHHHHcCCceEEEECCHH-----------HHHHHHhCCCCEEEEeCC
Confidence 466888888999988755444444 688899999999999998886432 266667789999988754
No 395
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=23.99 E-value=6.7e+02 Score=25.95 Aligned_cols=133 Identities=14% Similarity=0.017 Sum_probs=66.5
Q ss_pred HHHHHHHHHcCCeEEEEE---cCCCCCcCCCCCc--chhHHHHHhCCCEEEEECCc----cccccCcHHHHHHHHHHHHH
Q 019410 136 RAAAVAAKYLNLDCYLIL---RTSKVLVDQDPGL--IGNLLVERLVGAHIELISKE----EYSKIGSVTLTNILKEKLLK 206 (341)
Q Consensus 136 ~AlA~aa~~~Gl~~~ivv---p~~~~~~~~~~~~--~gn~~~~~~~GAeV~~v~~~----~~~~~~~~~~~~~~a~~l~~ 206 (341)
.-+...|+++|.++++-. .+-... +.|+. ...+...-.-|++-++.+.+ .|-- ...+.+.+++++.++
T Consensus 262 k~ii~~~~~~gkpvi~ATqmLeSM~~~--p~PTRAEvtDVanav~dG~D~vmLS~ETa~G~yPv-eaV~~m~~I~~~aE~ 338 (480)
T cd00288 262 KMLIAKCNLAGKPVITATQMLESMIYN--PRPTRAEVSDVANAVLDGTDCVMLSGETAKGKYPV-EAVKAMARICLEAEK 338 (480)
T ss_pred HHHHHHHHHcCCCEEEEchhHHHHhhC--CCCCchhhHHHHHHHHhCCcEEEEechhcCCCCHH-HHHHHHHHHHHHHHh
Confidence 346778999999888742 111110 01221 12233344459997777542 2311 011233444443332
Q ss_pred hCCCc-EEeCCCCC--ch-hHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcCCCCCeEEEEeeC
Q 019410 207 EGRRP-YVIPVGGS--NS-IGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVC 282 (341)
Q Consensus 207 ~g~~~-~~ip~g~~--n~-~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~~~~~rVigVe~~ 282 (341)
..... ++...... .. .........+.++.+.+ ..++||+++=||.|+.-++++ .|+..|++|...
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~aia~sAv~~A~~l-------~akaIVv~T~SG~TA~~lS~~----RP~~pIiavT~~ 407 (480)
T cd00288 339 ALSHRVLFNEMRRLTPRPTSTTEAVAMSAVRAAFEL-------GAKAIVVLTTSGRTARLVSKY----RPNAPIIAVTRN 407 (480)
T ss_pred ccchhhhhhhhhcccccCCChHHHHHHHHHHHHHhc-------CCCEEEEECCCcHHHHHHHhh----CCCCCEEEEcCC
Confidence 11000 01000000 00 11223334566666655 378999999999998655543 477899987765
No 396
>PRK08265 short chain dehydrogenase; Provisional
Probab=23.98 E-value=3.6e+02 Score=24.44 Aligned_cols=31 Identities=23% Similarity=0.094 Sum_probs=22.9
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEc
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 154 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp 154 (341)
..+|| |++ |--|.++|....+.|.+++++-+
T Consensus 8 ~vlIt-Gas-~gIG~~ia~~l~~~G~~V~~~~r 38 (261)
T PRK08265 8 VAIVT-GGA-TLIGAAVARALVAAGARVAIVDI 38 (261)
T ss_pred EEEEE-CCC-ChHHHHHHHHHHHCCCEEEEEeC
Confidence 34454 544 67999999999999998777644
No 397
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=23.87 E-value=3.3e+02 Score=26.91 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=13.7
Q ss_pred HHHHHHHHhcCCCCCCCCEEEEcCCchhH
Q 019410 231 IKEIEQQLQTGTGGVKFDDIVVACGSGGT 259 (341)
Q Consensus 231 a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt 259 (341)
..++.+++.+ ..+|. |+++|+|..
T Consensus 73 v~~~~~~~~~----~~~D~-IIaiGGGS~ 96 (383)
T cd08186 73 VDEAAKLGRE----FGAQA-VIAIGGGSP 96 (383)
T ss_pred HHHHHHHHHH----cCCCE-EEEeCCccH
Confidence 3445555543 24664 677888765
No 398
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=23.78 E-value=2.1e+02 Score=28.14 Aligned_cols=54 Identities=26% Similarity=0.315 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCCCCCCCCEEEEcCC-chhHHHH----HHHHHhcCCCCCeEEEEeeCCCCc
Q 019410 231 IKEIEQQLQTGTGGVKFDDIVVACG-SGGTIAG----LSLGSWLGTLKAKVHAFSVCDDPD 286 (341)
Q Consensus 231 a~EI~~Ql~~~~~g~~~D~Ivv~vG-tGGt~aG----l~~~~k~~~~~~rVigVe~~g~~~ 286 (341)
..||.+++... .....|.||+.+| +|||=.| ++..+++..+ ..++++-+.+...
T Consensus 83 ~e~I~~~le~~-~~~~~d~~~i~aglGGGTGsG~~p~iae~lke~~~-~~~~~iv~~P~~~ 141 (349)
T cd02202 83 LEEVMRAIDDR-GTSDADAILVIAGLGGGTGSGGAPVLAKELKERYE-EPVYALGVLPARE 141 (349)
T ss_pred HHHHHHHHhcc-ccccccEEEEecccCCCccccHHHHHHHHHHHhCC-ccEEEEEEecCCC
Confidence 34566666420 0012788888877 3344444 3444555544 4567777666543
No 399
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=23.69 E-value=1.1e+02 Score=31.92 Aligned_cols=38 Identities=21% Similarity=0.403 Sum_probs=29.2
Q ss_pred CCCCEEEEcCCchhHHHHHHHHHhcCCCCCeEEEEeeCCCCc
Q 019410 245 VKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPD 286 (341)
Q Consensus 245 ~~~D~Ivv~vGtGGt~aGl~~~~k~~~~~~rVigVe~~g~~~ 286 (341)
.++|+|||.+|++|.+ .+.++..+..+|+-.|.-+...
T Consensus 6 ~~~D~vIVGsG~aG~~----lA~rLs~~g~~VllLEaG~~~~ 43 (542)
T COG2303 6 MEYDYVIVGSGSAGSV----LAARLSDAGLSVLVLEAGGPDR 43 (542)
T ss_pred CCCCEEEECCCchhHH----HHHHhcCCCCeEEEEeCCCCCC
Confidence 4699999999988765 4455557889999998876533
No 400
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=23.69 E-value=5.5e+02 Score=23.25 Aligned_cols=31 Identities=23% Similarity=0.182 Sum_probs=20.7
Q ss_pred CeEEEeCCCcc-hHHHHHHHHHHHcCCeEEEEE
Q 019410 122 DCIITIGGIQS-NHCRAAAVAAKYLNLDCYLIL 153 (341)
Q Consensus 122 ~~vVt~G~s~G-Nhg~AlA~aa~~~Gl~~~ivv 153 (341)
..||| |++++ --|.++|...++.|.++++.-
T Consensus 10 ~~lIT-Gas~~~GIG~a~a~~la~~G~~v~~~~ 41 (260)
T PRK06603 10 KGLIT-GIANNMSISWAIAQLAKKHGAELWFTY 41 (260)
T ss_pred EEEEE-CCCCCcchHHHHHHHHHHcCCEEEEEe
Confidence 34555 55432 467888888888999876654
No 401
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=23.68 E-value=5.5e+02 Score=23.17 Aligned_cols=43 Identities=19% Similarity=0.074 Sum_probs=28.3
Q ss_pred HHHHHHHHcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEc
Q 019410 111 FLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 154 (341)
Q Consensus 111 ~ll~~A~~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp 154 (341)
..+..+...+++.||..+ ........+-..++..|++++++-.
T Consensus 45 ~~i~~~~~~~~dgiii~~-~~~~~~~~~~~~~~~~~iPvV~~~~ 87 (289)
T cd01540 45 SAIDNLGAQGAKGFVICV-PDVKLGPAIVAKAKAYNMKVVAVDD 87 (289)
T ss_pred HHHHHHHHcCCCEEEEcc-CchhhhHHHHHHHHhCCCeEEEecC
Confidence 356666778889988653 2122334445567789999998853
No 402
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=23.68 E-value=2.9e+02 Score=25.73 Aligned_cols=48 Identities=17% Similarity=0.202 Sum_probs=32.1
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEE
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 182 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~ 182 (341)
++|+..|+ |..|++++..|+.+|++.+++.+.. .+...++.+|++-++
T Consensus 164 ~~vlI~g~--g~iG~~~~~~a~~~G~~v~~~~~~~-----------~~~~~~~~~g~~~~~ 211 (330)
T cd08245 164 ERVAVLGI--GGLGHLAVQYARAMGFETVAITRSP-----------DKRELARKLGADEVV 211 (330)
T ss_pred CEEEEECC--CHHHHHHHHHHHHCCCEEEEEeCCH-----------HHHHHHHHhCCcEEe
Confidence 34444453 4599999999999999866665432 235666778876544
No 403
>PRK06720 hypothetical protein; Provisional
Probab=23.66 E-value=4.8e+02 Score=22.51 Aligned_cols=32 Identities=22% Similarity=0.199 Sum_probs=19.8
Q ss_pred CCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEE
Q 019410 120 GADCIITIGGIQSNHCRAAAVAAKYLNLDCYLIL 153 (341)
Q Consensus 120 g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivv 153 (341)
|...+|| |+ .+--|.++|......|.+++++-
T Consensus 16 gk~~lVT-Ga-~~GIG~aia~~l~~~G~~V~l~~ 47 (169)
T PRK06720 16 GKVAIVT-GG-GIGIGRNTALLLAKQGAKVIVTD 47 (169)
T ss_pred CCEEEEe-cC-CChHHHHHHHHHHHCCCEEEEEE
Confidence 3344555 44 35678888877777777655553
No 404
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=23.64 E-value=1.4e+02 Score=29.28 Aligned_cols=31 Identities=29% Similarity=0.270 Sum_probs=25.4
Q ss_pred eEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcC
Q 019410 123 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 155 (341)
Q Consensus 123 ~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~ 155 (341)
+|...|+ |-.|+.++.+|+++|++++++-+.
T Consensus 4 ~igilG~--Gql~~ml~~aa~~lG~~v~~~d~~ 34 (372)
T PRK06019 4 TIGIIGG--GQLGRMLALAAAPLGYKVIVLDPD 34 (372)
T ss_pred EEEEECC--CHHHHHHHHHHHHcCCEEEEEeCC
Confidence 4545576 679999999999999999998764
No 405
>PRK09126 hypothetical protein; Provisional
Probab=23.60 E-value=1e+02 Score=29.88 Aligned_cols=32 Identities=22% Similarity=0.214 Sum_probs=24.6
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCC
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTS 156 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~ 156 (341)
+.+| .|| |=.|.++|.+.++.|++++|+=...
T Consensus 5 dviI-vGg--G~aGl~~A~~L~~~G~~v~v~E~~~ 36 (392)
T PRK09126 5 DIVV-VGA--GPAGLSFARSLAGSGLKVTLIERQP 36 (392)
T ss_pred cEEE-ECc--CHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 4444 455 7899999999999999988875443
No 406
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=23.57 E-value=3.8e+02 Score=26.52 Aligned_cols=35 Identities=20% Similarity=0.261 Sum_probs=19.8
Q ss_pred CCCEEEEcCCchhHHHHHHHHHhc-----------------CCCCCeEEEEeeC
Q 019410 246 KFDDIVVACGSGGTIAGLSLGSWL-----------------GTLKAKVHAFSVC 282 (341)
Q Consensus 246 ~~D~Ivv~vGtGGt~aGl~~~~k~-----------------~~~~~rVigVe~~ 282 (341)
++|. |+++|+|..+ =++++... ..+..++++|..-
T Consensus 88 ~~D~-IiaiGGGS~i-D~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTT 139 (383)
T PRK09860 88 NCDS-VISLGGGSPH-DCAKGIALVAANGGDIRDYEGVDRSAKPQLPMIAINTT 139 (383)
T ss_pred CCCE-EEEeCCchHH-HHHHHHHHHHHCCCCHHHHhCcCccCCCCCCEEEEeCC
Confidence 4665 6678887653 33433321 1245678888843
No 407
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=23.52 E-value=1.1e+02 Score=30.80 Aligned_cols=28 Identities=32% Similarity=0.458 Sum_probs=21.6
Q ss_pred EEEeCCCcchHHHHHHHHHHHcCCeEEEEE
Q 019410 124 IITIGGIQSNHCRAAAVAAKYLNLDCYLIL 153 (341)
Q Consensus 124 vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivv 153 (341)
||..|| |=.|...|++++++|.++.++.
T Consensus 2 ViVVGg--G~AG~eAA~aaAr~G~~V~Lit 29 (392)
T PF01134_consen 2 VIVVGG--GHAGCEAALAAARMGAKVLLIT 29 (392)
T ss_dssp EEEESS--SHHHHHHHHHHHHTT--EEEEE
T ss_pred EEEECC--CHHHHHHHHHHHHCCCCEEEEe
Confidence 344566 7899999999999999999994
No 408
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=23.45 E-value=6.1e+02 Score=23.67 Aligned_cols=35 Identities=14% Similarity=0.116 Sum_probs=24.9
Q ss_pred CCCCEEEEcCCchhHHHHHHHHHhcCCC-------------CCeEEEEee
Q 019410 245 VKFDDIVVACGSGGTIAGLSLGSWLGTL-------------KAKVHAFSV 281 (341)
Q Consensus 245 ~~~D~Ivv~vGtGGt~aGl~~~~k~~~~-------------~~rVigVe~ 281 (341)
..+|+||+ .+..++.|+..+++..+. ++.|+|++-
T Consensus 242 ~~~~ai~~--~nd~~A~g~~~~l~~~g~~vp~~~~~~~~p~di~vigfd~ 289 (342)
T PRK10014 242 PTISAVVC--YNETIAMGAWFGLLRAGRQSGESGVDRYFEQQVALAAFTD 289 (342)
T ss_pred CCCCEEEE--CCcHHHHHHHHHHHHcCCCCCCccccccccCceEEEEecC
Confidence 35899886 466778899888877653 566777654
No 409
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=23.43 E-value=6.8e+02 Score=24.17 Aligned_cols=32 Identities=22% Similarity=0.120 Sum_probs=23.6
Q ss_pred eEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCC
Q 019410 123 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTS 156 (341)
Q Consensus 123 ~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~ 156 (341)
.|...|+ |+.|.++|+.++..|+.-+++++-.
T Consensus 8 KI~IIGa--G~vG~~ia~~la~~gl~~i~LvDi~ 39 (321)
T PTZ00082 8 KISLIGS--GNIGGVMAYLIVLKNLGDVVLFDIV 39 (321)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 4555664 8999999999999998335555543
No 410
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=23.40 E-value=3e+02 Score=24.42 Aligned_cols=55 Identities=13% Similarity=-0.016 Sum_probs=34.6
Q ss_pred eEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEEC
Q 019410 123 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 184 (341)
Q Consensus 123 ~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~ 184 (341)
+++..|+ +|--|.++|......|.++++..+..... .......++..|.++..+.
T Consensus 8 ~vlitGa-sg~iG~~l~~~l~~~g~~v~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 62 (252)
T PRK06077 8 VVVVTGS-GRGIGRAIAVRLAKEGSLVVVNAKKRAEE------MNETLKMVKENGGEGIGVL 62 (252)
T ss_pred EEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCChHH------HHHHHHHHHHcCCeeEEEE
Confidence 4444454 46889999999999999987765433211 0123455666777766554
No 411
>TIGR02685 pter_reduc_Leis pteridine reductase. Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.
Probab=23.16 E-value=5.6e+02 Score=23.14 Aligned_cols=29 Identities=21% Similarity=0.190 Sum_probs=21.2
Q ss_pred EEEeCCCcchHHHHHHHHHHHcCCeEEEEEc
Q 019410 124 IITIGGIQSNHCRAAAVAAKYLNLDCYLILR 154 (341)
Q Consensus 124 vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp 154 (341)
+|| |+ ++.-|.++|....+.|.++++..+
T Consensus 5 lIT-Ga-s~gIG~~~a~~l~~~G~~V~~~~~ 33 (267)
T TIGR02685 5 VVT-GA-AKRIGSSIAVALHQEGYRVVLHYH 33 (267)
T ss_pred EEe-CC-CCcHHHHHHHHHHhCCCeEEEEcC
Confidence 444 54 468999999998889988766543
No 412
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=22.93 E-value=1.2e+02 Score=27.83 Aligned_cols=29 Identities=31% Similarity=0.326 Sum_probs=23.3
Q ss_pred EEEeCCCcchHHHHHHHHHHHcCCeEEEEEc
Q 019410 124 IITIGGIQSNHCRAAAVAAKYLNLDCYLILR 154 (341)
Q Consensus 124 vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp 154 (341)
|+..|| |-.|.+.|..++++|++++++=.
T Consensus 3 vvIIG~--G~aGl~aA~~l~~~g~~v~lie~ 31 (300)
T TIGR01292 3 VIIIGA--GPAGLTAAIYAARANLKTLIIEG 31 (300)
T ss_pred EEEECC--CHHHHHHHHHHHHCCCCEEEEec
Confidence 344566 78999999999999999887754
No 413
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=22.85 E-value=7.1e+02 Score=24.23 Aligned_cols=96 Identities=17% Similarity=0.249 Sum_probs=0.0
Q ss_pred HHHHhCC-CEEEEECCccccccCcHHHHHHHHHHHHHhCCCcE--EeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCC
Q 019410 171 LVERLVG-AHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPY--VIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKF 247 (341)
Q Consensus 171 ~~~~~~G-AeV~~v~~~~~~~~~~~~~~~~~a~~l~~~g~~~~--~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~ 247 (341)
..++.+| -++.++.+.. ....+.+.+.+.+.+.+-... .++.+-.||.- ....++.+++.+ ..+
T Consensus 24 ~~l~~~~~~~~livtd~~----~~~~~~~~v~~~L~~~gi~~~~~~~~~~e~~~~~-----~~v~~~~~~~~~----~~~ 90 (358)
T PRK00002 24 ELLAPLKGKKVAIVTDET----VAPLYLEKLRASLEAAGFEVDVVVLPDGEQYKSL-----ETLEKIYDALLE----AGL 90 (358)
T ss_pred HHHHhcCCCeEEEEECCc----hHHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCH-----HHHHHHHHHHHH----cCC
Q ss_pred --CEEEEcCCchhH--HHHHHHHHhcCCCCCeEEEEee
Q 019410 248 --DDIVVACGSGGT--IAGLSLGSWLGTLKAKVHAFSV 281 (341)
Q Consensus 248 --D~Ivv~vGtGGt--~aGl~~~~k~~~~~~rVigVe~ 281 (341)
..+|+++|+|.. +++.+..... ..++++.|..
T Consensus 91 ~r~d~IIavGGGsv~D~aK~iA~~~~--~gip~i~IPT 126 (358)
T PRK00002 91 DRSDTLIALGGGVIGDLAGFAAATYM--RGIRFIQVPT 126 (358)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHhc--CCCCEEEcCc
No 414
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=22.83 E-value=2.2e+02 Score=26.70 Aligned_cols=49 Identities=18% Similarity=0.159 Sum_probs=32.3
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHc-CCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEE
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYL-NLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 182 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~-Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~ 182 (341)
++|+..|+ .|..|.+++..|+.+ |++.+.+.+.. .+...++.+|++-++
T Consensus 150 ~~vlV~ga-~g~vg~~~~~~ak~~~G~~vi~~~~~~-----------~~~~~l~~~g~~~~~ 199 (336)
T TIGR02817 150 RALLIIGG-AGGVGSILIQLARQLTGLTVIATASRP-----------ESQEWVLELGAHHVI 199 (336)
T ss_pred CEEEEEcC-CcHHHHHHHHHHHHhCCCEEEEEcCcH-----------HHHHHHHHcCCCEEE
Confidence 35544543 468888989999987 98876664432 135566778986443
No 415
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=22.74 E-value=3.1e+02 Score=24.25 Aligned_cols=12 Identities=17% Similarity=0.227 Sum_probs=7.8
Q ss_pred CCCeEEEEeeCC
Q 019410 272 LKAKVHAFSVCD 283 (341)
Q Consensus 272 ~~~rVigVe~~g 283 (341)
..++|..|.+..
T Consensus 177 ~gi~v~~v~pg~ 188 (239)
T PRK07666 177 HNIRVTALTPST 188 (239)
T ss_pred cCcEEEEEecCc
Confidence 357777777654
No 416
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=22.71 E-value=3.6e+02 Score=25.43 Aligned_cols=71 Identities=24% Similarity=0.261 Sum_probs=47.8
Q ss_pred HhHHH-HHHHHHHHHcCCCeEEEeCCCcch-HHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEE
Q 019410 105 KVRKL-EFLMADAVAQGADCIITIGGIQSN-HCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 182 (341)
Q Consensus 105 K~Rkl-~~ll~~A~~~g~~~vVt~G~s~GN-hg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~ 182 (341)
||--. .+-+.+|...|++.|+..-+.-+. ....+...|..+|+.+.+=+.+.. -+......|++++-
T Consensus 115 KDFIid~~QI~eA~~~GADaVLLI~~~L~~~~l~~l~~~a~~lGle~lVEVh~~~-----------El~~al~~~a~iiG 183 (254)
T PF00218_consen 115 KDFIIDPYQIYEARAAGADAVLLIAAILSDDQLEELLELAHSLGLEALVEVHNEE-----------ELERALEAGADIIG 183 (254)
T ss_dssp ES---SHHHHHHHHHTT-SEEEEEGGGSGHHHHHHHHHHHHHTT-EEEEEESSHH-----------HHHHHHHTT-SEEE
T ss_pred ccCCCCHHHHHHHHHcCCCEeehhHHhCCHHHHHHHHHHHHHcCCCeEEEECCHH-----------HHHHHHHcCCCEEE
Confidence 44443 567889999999987744333344 448999999999999998876432 26666678999999
Q ss_pred ECCc
Q 019410 183 ISKE 186 (341)
Q Consensus 183 v~~~ 186 (341)
+...
T Consensus 184 INnR 187 (254)
T PF00218_consen 184 INNR 187 (254)
T ss_dssp EESB
T ss_pred EeCc
Confidence 9753
No 417
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=22.69 E-value=5.6e+02 Score=22.91 Aligned_cols=44 Identities=11% Similarity=0.043 Sum_probs=28.0
Q ss_pred HHHHHHHHHcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEc
Q 019410 110 EFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 154 (341)
Q Consensus 110 ~~ll~~A~~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp 154 (341)
..+++.+..++.+.||..+ ..+.........++..|++++.+-+
T Consensus 47 ~~~i~~l~~~~vdgiIi~~-~~~~~~~~~~~~~~~~~iPvV~~~~ 90 (275)
T cd06320 47 LSIAENMINKGYKGLLFSP-ISDVNLVPAVERAKKKGIPVVNVND 90 (275)
T ss_pred HHHHHHHHHhCCCEEEECC-CChHHhHHHHHHHHHCCCeEEEECC
Confidence 3456666777899887543 3233333445566789999987754
No 418
>PRK06128 oxidoreductase; Provisional
Probab=22.67 E-value=6.2e+02 Score=23.48 Aligned_cols=73 Identities=18% Similarity=0.141 Sum_probs=39.4
Q ss_pred HHHHHhCCCEEEEECCccccccCcHHHHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCE
Q 019410 170 LLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDD 249 (341)
Q Consensus 170 ~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~ 249 (341)
...+...|++|+++..... ....+++.+.+.+.+....+++.+-.++... ..+..++.+.++ .+|.
T Consensus 72 a~~l~~~G~~V~i~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v---~~~~~~~~~~~g------~iD~ 137 (300)
T PRK06128 72 AIAFAREGADIALNYLPEE-----EQDAAEVVQLIQAEGRKAVALPGDLKDEAFC---RQLVERAVKELG------GLDI 137 (300)
T ss_pred HHHHHHcCCEEEEEeCCcc-----hHHHHHHHHHHHHcCCeEEEEecCCCCHHHH---HHHHHHHHHHhC------CCCE
Confidence 3344457999987643211 1112334444444443445565554454432 234556655543 6999
Q ss_pred EEEcCCc
Q 019410 250 IVVACGS 256 (341)
Q Consensus 250 Ivv~vGt 256 (341)
||..+|.
T Consensus 138 lV~nAg~ 144 (300)
T PRK06128 138 LVNIAGK 144 (300)
T ss_pred EEECCcc
Confidence 9999885
No 419
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=22.62 E-value=1.7e+02 Score=29.21 Aligned_cols=41 Identities=24% Similarity=0.250 Sum_probs=29.0
Q ss_pred CCEEEEcCCchhHHHHHHHHHhcCCCCCeEEEEeeCCCCccchH
Q 019410 247 FDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYD 290 (341)
Q Consensus 247 ~D~Ivv~vGtGGt~aGl~~~~k~~~~~~rVigVe~~g~~~~~~~ 290 (341)
-|.||+.||.|+.+..+..+.. -.-+|++||+..-..+-++
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqA---GA~~vYAvEAS~MAqyA~~ 217 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQA---GAKKVYAVEASEMAQYARK 217 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHh---CcceEEEEehhHHHHHHHH
Confidence 3789999999987766665543 3458999998765544433
No 420
>PLN02834 3-dehydroquinate synthase
Probab=22.60 E-value=8.2e+02 Score=24.82 Aligned_cols=98 Identities=15% Similarity=0.165 Sum_probs=0.0
Q ss_pred HHHHh--CCCEEEEECCccccccCcHHHHHHHHHHHHHhCCCcEE----eCCCCCchhHHHHHHHHHHHHHHHHhcCCCC
Q 019410 171 LVERL--VGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYV----IPVGGSNSIGTWGYIEAIKEIEQQLQTGTGG 244 (341)
Q Consensus 171 ~~~~~--~GAeV~~v~~~~~~~~~~~~~~~~~a~~l~~~g~~~~~----ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g 244 (341)
..++. +|-++.++.+.. ....+.+.+.+.+++.+-...+ +|.+-.++.. ....++++++.+ .+
T Consensus 92 ~~l~~~~~g~rvlIVtD~~----v~~~~~~~v~~~L~~~g~~~~v~~~v~~~gE~~ksl-----~~v~~~~~~l~~--~~ 160 (433)
T PLN02834 92 ELLQRHVHGKRVLVVTNET----VAPLYLEKVVEALTAKGPELTVESVILPDGEKYKDM-----ETLMKVFDKALE--SR 160 (433)
T ss_pred HHHhhccCCCEEEEEECcc----HHHHHHHHHHHHHHhcCCceEEEEEEecCCcCCCCH-----HHHHHHHHHHHh--cC
Q ss_pred CCCCEEEEcCCchhH--HHHHHHHHhcCCCCCeEEEEee
Q 019410 245 VKFDDIVVACGSGGT--IAGLSLGSWLGTLKAKVHAFSV 281 (341)
Q Consensus 245 ~~~D~Ivv~vGtGGt--~aGl~~~~k~~~~~~rVigVe~ 281 (341)
.+-+.+|+++|+|.. ++|.+...+. ..+++|.|..
T Consensus 161 ~dr~~~VIAiGGGsv~D~ak~~A~~y~--rgiplI~VPT 197 (433)
T PLN02834 161 LDRRCTFVALGGGVIGDMCGFAAASYQ--RGVNFVQIPT 197 (433)
T ss_pred CCcCcEEEEECChHHHHHHHHHHHHhc--CCCCEEEECC
No 421
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=22.55 E-value=5.5e+02 Score=22.77 Aligned_cols=12 Identities=8% Similarity=-0.343 Sum_probs=8.4
Q ss_pred CCCeEEEEeeCC
Q 019410 272 LKAKVHAFSVCD 283 (341)
Q Consensus 272 ~~~rVigVe~~g 283 (341)
..++|..+.+..
T Consensus 181 ~gi~v~~i~pg~ 192 (256)
T PRK12745 181 EGIGVYEVRPGL 192 (256)
T ss_pred hCCEEEEEecCC
Confidence 457888887643
No 422
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Probab=22.52 E-value=6.6e+02 Score=23.67 Aligned_cols=33 Identities=12% Similarity=-0.045 Sum_probs=22.3
Q ss_pred CCCCEEEEcCCchhHHHHHHHHHhcCCC-CCeEEE
Q 019410 245 VKFDDIVVACGSGGTIAGLSLGSWLGTL-KAKVHA 278 (341)
Q Consensus 245 ~~~D~Ivv~vGtGGt~aGl~~~~k~~~~-~~rVig 278 (341)
..+|.|++. +.|+-...+.+.++..+. ++++++
T Consensus 186 ~~pd~v~~~-~~~~~~~~~~~~~~~~G~~~~~~~~ 219 (334)
T cd06356 186 AKPDFVMSI-LVGANHLSFYRQWAAAGLGNIPMAS 219 (334)
T ss_pred cCCCEEEEe-ccCCcHHHHHHHHHHcCCccCceee
Confidence 468988874 444456667777777776 666654
No 423
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=22.50 E-value=8.8e+02 Score=25.15 Aligned_cols=22 Identities=5% Similarity=-0.144 Sum_probs=20.2
Q ss_pred chHHHHHHHHHHHcCCeEEEEE
Q 019410 132 SNHCRAAAVAAKYLNLDCYLIL 153 (341)
Q Consensus 132 GNhg~AlA~aa~~~Gl~~~ivv 153 (341)
|++|.++|.--...|++++++=
T Consensus 15 G~MG~~mA~nL~~~G~~V~V~N 36 (493)
T PLN02350 15 AVMGQNLALNIAEKGFPISVYN 36 (493)
T ss_pred HHHHHHHHHHHHhCCCeEEEEC
Confidence 7999999999999999999883
No 424
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=22.48 E-value=3.4e+02 Score=25.02 Aligned_cols=47 Identities=21% Similarity=0.239 Sum_probs=31.9
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEE
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHI 180 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV 180 (341)
++++..|+ .|-.|.+++..++.+|.+.+++.+.. .+...++.+|++-
T Consensus 164 ~~vlI~ga-~g~vG~~~~~~a~~~g~~v~~~~~~~-----------~~~~~~~~~~~~~ 210 (332)
T cd08259 164 DTVLVTGA-GGGVGIHAIQLAKALGARVIAVTRSP-----------EKLKILKELGADY 210 (332)
T ss_pred CEEEEECC-CCHHHHHHHHHHHHcCCeEEEEeCCH-----------HHHHHHHHcCCcE
Confidence 44555554 46899999999999999977765432 1345556677643
No 425
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=22.47 E-value=5.2e+02 Score=24.78 Aligned_cols=94 Identities=13% Similarity=0.067 Sum_probs=51.4
Q ss_pred HHHHHHHHcCCeEEEEEcCCCCCcCCCCC-cchhHHHHHhCCCEEEEECCccccccCcHHHHHHHHHHHHHhCCCcEEe-
Q 019410 137 AAAVAAKYLNLDCYLILRTSKVLVDQDPG-LIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVI- 214 (341)
Q Consensus 137 AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~-~~gn~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~a~~l~~~g~~~~~i- 214 (341)
++.|.|+++|++.+-++... +..++++. ...-+..++..+..+++++.. +. ...++.++++. |-....+
T Consensus 212 af~Yf~~~ygl~~~~~~~~~-~~~eps~~~l~~l~~~ik~~~v~~If~e~~-~~----~~~~~~la~e~---g~~v~~ld 282 (311)
T PRK09545 212 AYGYFEKHYGLTPLGHFTVN-PEIQPGAQRLHEIRTQLVEQKATCVFAEPQ-FR----PAVIESVAKGT---SVRMGTLD 282 (311)
T ss_pred hHHHHHHhCCCceeeeeccC-CCCCCCHHHHHHHHHHHHHcCCCEEEecCC-CC----hHHHHHHHHhc---CCeEEEec
Confidence 88999999999987655321 11111111 122366777889999999863 32 23334444332 2222233
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHh
Q 019410 215 PVGGSNSIGTWGYIEAIKEIEQQLQ 239 (341)
Q Consensus 215 p~g~~n~~~~~G~~t~a~EI~~Ql~ 239 (341)
|.+.........|..+..+..+++.
T Consensus 283 pl~~~~~~~~~~Y~~~m~~n~~~l~ 307 (311)
T PRK09545 283 PLGTNIKLGKDSYSEFLSQLANQYA 307 (311)
T ss_pred cccccccCCHhHHHHHHHHHHHHHH
Confidence 4432211112467777777777764
No 426
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=22.46 E-value=3.9e+02 Score=26.29 Aligned_cols=46 Identities=11% Similarity=0.113 Sum_probs=25.9
Q ss_pred HHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhc-----------------CCCCCeEEEEeeC
Q 019410 231 IKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWL-----------------GTLKAKVHAFSVC 282 (341)
Q Consensus 231 a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~-----------------~~~~~rVigVe~~ 282 (341)
..++.+++.+ .++|. |+++|+|.. .=++++... ..+..+++.|...
T Consensus 74 v~~~~~~~~~----~~~D~-IIavGGGS~-iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTt 136 (377)
T cd08176 74 VKDGLAVFKK----EGCDF-IISIGGGSP-HDCAKAIGIVATNGGDIRDYEGVAKSKKPAVPIVAINTT 136 (377)
T ss_pred HHHHHHHHHh----cCCCE-EEEeCCcHH-HHHHHHHHHHHhCCCCHHHHhCcCccCCCCCCEEEeCCC
Confidence 4555566653 35664 667888765 333443321 1245788888854
No 427
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=22.45 E-value=1.2e+02 Score=30.65 Aligned_cols=30 Identities=33% Similarity=0.490 Sum_probs=23.9
Q ss_pred CCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEE
Q 019410 121 ADCIITIGGIQSNHCRAAAVAAKYLNLDCYLIL 153 (341)
Q Consensus 121 ~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivv 153 (341)
+|.|| .|+ |-.|.+.|+.+++.|.+++|+=
T Consensus 5 ~DVvV-VG~--G~aGl~AA~~aa~~G~~V~vlE 34 (466)
T PRK08274 5 VDVLV-IGG--GNAALCAALAAREAGASVLLLE 34 (466)
T ss_pred CCEEE-ECC--CHHHHHHHHHHHHCCCeEEEEe
Confidence 45555 465 7899999999999999887764
No 428
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=22.42 E-value=2.5e+02 Score=26.78 Aligned_cols=45 Identities=13% Similarity=0.096 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHc-C----CCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEc
Q 019410 108 KLEFLMADAVAQ-G----ADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 154 (341)
Q Consensus 108 kl~~ll~~A~~~-g----~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp 154 (341)
.++..+..+.+. + .++++..|. |+.|+++|..++.+|.+++++-+
T Consensus 133 ~Ae~ai~~al~~~~~~l~gk~v~IiG~--G~iG~avA~~L~~~G~~V~v~~R 182 (287)
T TIGR02853 133 TAEGAIMMAIEHTDFTIHGSNVMVLGF--GRTGMTIARTFSALGARVFVGAR 182 (287)
T ss_pred HHHHHHHHHHHhcCCCCCCCEEEEEcC--hHHHHHHHHHHHHCCCEEEEEeC
Confidence 355555555433 1 245555664 88999999999999987665543
No 429
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=22.41 E-value=3.9e+02 Score=25.91 Aligned_cols=33 Identities=21% Similarity=0.136 Sum_probs=15.9
Q ss_pred CCCEEEEcCCchhHHHHHHHHHhcCCCCCeEEEEee
Q 019410 246 KFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSV 281 (341)
Q Consensus 246 ~~D~Ivv~vGtGGt~aGl~~~~k~~~~~~rVigVe~ 281 (341)
++|. |+++|+|.. .-++++.... ...++|.|..
T Consensus 78 ~~d~-iiavGGGs~-~D~aK~ia~~-~~~p~i~VPT 110 (345)
T cd08171 78 EADM-IFAVGGGKA-IDTVKVLADK-LGKPVFTFPT 110 (345)
T ss_pred CCCE-EEEeCCcHH-HHHHHHHHHH-cCCCEEEecC
Confidence 3544 555776543 3344443221 1345666664
No 430
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=22.39 E-value=6.5e+02 Score=23.56 Aligned_cols=57 Identities=19% Similarity=0.100 Sum_probs=35.3
Q ss_pred CCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECC
Q 019410 121 ADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISK 185 (341)
Q Consensus 121 ~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~ 185 (341)
...||| |+ ++.-|.++|..-...|.+++++-...... .......++..|.+++.+..
T Consensus 13 k~~lVT-Ga-s~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~------~~~~~~~i~~~g~~~~~~~~ 69 (306)
T PRK07792 13 KVAVVT-GA-AAGLGRAEALGLARLGATVVVNDVASALD------ASDVLDEIRAAGAKAVAVAG 69 (306)
T ss_pred CEEEEE-CC-CChHHHHHHHHHHHCCCEEEEecCCchhH------HHHHHHHHHhcCCeEEEEeC
Confidence 344555 44 46889999999999999876654322110 01124456667888877654
No 431
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=22.33 E-value=3.1e+02 Score=25.67 Aligned_cols=49 Identities=20% Similarity=0.186 Sum_probs=33.2
Q ss_pred CeEEEeCCCcchHHHHHHHHHHH-cCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEE
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKY-LNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELI 183 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~-~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v 183 (341)
++|+..| . |-.|.+++..|+. +|.+.+++.+.. .+...++.+|++.++.
T Consensus 164 ~~vlV~g-~-g~vG~~~~~la~~~~g~~v~~~~~~~-----------~~~~~~~~~g~~~v~~ 213 (338)
T PRK09422 164 QWIAIYG-A-GGLGNLALQYAKNVFNAKVIAVDIND-----------DKLALAKEVGADLTIN 213 (338)
T ss_pred CEEEEEC-C-cHHHHHHHHHHHHhCCCeEEEEeCCh-----------HHHHHHHHcCCcEEec
Confidence 5565555 3 6789999999997 598865554332 2567778899865543
No 432
>PRK07454 short chain dehydrogenase; Provisional
Probab=22.27 E-value=5.4e+02 Score=22.63 Aligned_cols=32 Identities=25% Similarity=0.245 Sum_probs=24.3
Q ss_pred eEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcC
Q 019410 123 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 155 (341)
Q Consensus 123 ~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~ 155 (341)
+++..|+ +|.-|.++|......|.+++++.++
T Consensus 8 ~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~ 39 (241)
T PRK07454 8 RALITGA-SSGIGKATALAFAKAGWDLALVARS 39 (241)
T ss_pred EEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCC
Confidence 3333454 5799999999999999988777653
No 433
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=22.24 E-value=4.4e+02 Score=25.94 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=14.7
Q ss_pred HHHHHHHHhcCCCCCCCCEEEEcCCchhHH
Q 019410 231 IKEIEQQLQTGTGGVKFDDIVVACGSGGTI 260 (341)
Q Consensus 231 a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~ 260 (341)
..|+.+++.+ .++|. |+++|+|..+
T Consensus 75 v~~~~~~~~~----~~~D~-IiaiGGGSvi 99 (379)
T TIGR02638 75 VKAGVAAFKA----SGADY-LIAIGGGSPI 99 (379)
T ss_pred HHHHHHHHHh----cCCCE-EEEeCChHHH
Confidence 3455555543 34655 6678887764
No 434
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=22.24 E-value=73 Score=25.41 Aligned_cols=38 Identities=24% Similarity=0.399 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhc
Q 019410 229 EAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWL 269 (341)
Q Consensus 229 t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~ 269 (341)
.++.++.+++.+ .+.++|. |+++..||...+...+...
T Consensus 12 ~~~~~la~~i~~--~~~~~~~-ivgi~~~G~~~a~~la~~l 49 (125)
T PF00156_consen 12 ALAERLAEQIKE--SGFDFDV-IVGIPRGGIPLAAALARAL 49 (125)
T ss_dssp HHHHHHHHHHHH--HTTTSSE-EEEETTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--hCCCCCE-EEeehhccHHHHHHHHHHh
Confidence 445555566543 2345666 6666666665555544443
No 435
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=22.21 E-value=35 Score=34.23 Aligned_cols=56 Identities=13% Similarity=0.070 Sum_probs=35.5
Q ss_pred eEEEeeCCCCCCccccCccchhhHhhhhhc----ccccccC--CCCCchHhHHHHHHHHHHHHcCCCeEEEe
Q 019410 62 EVWLKSNFSGVSDDFWNLWGFERICYVLLL----QRDDLSG--MQLSGNKVRKLEFLMADAVAQGADCIITI 127 (341)
Q Consensus 62 ~v~~K~~~~~~~~e~~np~gs~~~~~~~~~----~REDl~~--~~~ggnK~Rkl~~ll~~A~~~g~~~vVt~ 127 (341)
-+|.| +|.+||+||+|++=++.. .++.-.. -...||-.+.+.+ .|...|.+.+|..
T Consensus 86 ~~~~K-------~E~~npTGSFKdRga~~~i~~a~~~g~~~Vv~aSsGN~g~alA~---~aa~~Gi~~~I~v 147 (398)
T TIGR03844 86 GYWPE-------RGAFMRTCSFKELEALPTMQRLKERGGKTLVVASAGNTGRAFAE---VSAITGQPVILVV 147 (398)
T ss_pred Ccccc-------hhccCCccccHHHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH---HHHHcCCcEEEEE
Confidence 46999 999999999998876642 2222111 1357786666543 3445677766644
No 436
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=22.20 E-value=4.3e+02 Score=22.84 Aligned_cols=61 Identities=18% Similarity=0.153 Sum_probs=40.7
Q ss_pred HHHHHHHHHHcCC--CeEEEeCCCcchHHHHHHHHHHH-cCCeEEEEEcCCCCCcCCCCCcchhHHHH-HhCCCEEEEEC
Q 019410 109 LEFLMADAVAQGA--DCIITIGGIQSNHCRAAAVAAKY-LNLDCYLILRTSKVLVDQDPGLIGNLLVE-RLVGAHIELIS 184 (341)
Q Consensus 109 l~~ll~~A~~~g~--~~vVt~G~s~GNhg~AlA~aa~~-~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~-~~~GAeV~~v~ 184 (341)
....+.++...|. ..|+.|| +|++++++|.+ .|++|-++.+... ..+. +...|+|+..+
T Consensus 46 ~a~~va~~V~~g~~~~GIliCG-----tGiG~siaANK~~GIRAA~~~d~~~------------A~~ar~hNnaNVL~lG 108 (148)
T PRK05571 46 YAKKVAEAVVAGEADRGILICG-----TGIGMSIAANKVKGIRAALCHDTYS------------AHLAREHNNANVLALG 108 (148)
T ss_pred HHHHHHHHHHcCCCCEEEEEcC-----CcHHHHHHHhcCCCeEEEEECCHHH------------HHHHHHhcCCcEEEEC
Confidence 3344555665552 4566665 47888888887 8999999865322 2333 35689999998
Q ss_pred Cc
Q 019410 185 KE 186 (341)
Q Consensus 185 ~~ 186 (341)
..
T Consensus 109 ~r 110 (148)
T PRK05571 109 AR 110 (148)
T ss_pred cc
Confidence 63
No 437
>PRK08589 short chain dehydrogenase; Validated
Probab=22.18 E-value=4.3e+02 Score=24.12 Aligned_cols=71 Identities=15% Similarity=0.148 Sum_probs=40.0
Q ss_pred HHHHHhCCCEEEEECCccccccCcHHHHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCE
Q 019410 170 LLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDD 249 (341)
Q Consensus 170 ~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~ 249 (341)
.+.+...|++|+.+.+. .. .++..+++.+.+.+..+++.+-.++... ..+..++.+++ +.+|.
T Consensus 23 a~~l~~~G~~vi~~~r~--~~------~~~~~~~~~~~~~~~~~~~~Dl~~~~~~---~~~~~~~~~~~------g~id~ 85 (272)
T PRK08589 23 AIALAQEGAYVLAVDIA--EA------VSETVDKIKSNGGKAKAYHVDISDEQQV---KDFASEIKEQF------GRVDV 85 (272)
T ss_pred HHHHHHCCCEEEEEeCc--HH------HHHHHHHHHhcCCeEEEEEeecCCHHHH---HHHHHHHHHHc------CCcCE
Confidence 33444579999998753 11 1333445544333344555544444432 23455565554 36999
Q ss_pred EEEcCCch
Q 019410 250 IVVACGSG 257 (341)
Q Consensus 250 Ivv~vGtG 257 (341)
+|..+|..
T Consensus 86 li~~Ag~~ 93 (272)
T PRK08589 86 LFNNAGVD 93 (272)
T ss_pred EEECCCCC
Confidence 99998853
No 438
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=22.13 E-value=3e+02 Score=22.03 Aligned_cols=42 Identities=29% Similarity=0.189 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCCCCCCCCEEEEcCCchhHHHHHHHHHhcCCCCCeEEEEeeC
Q 019410 230 AIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVC 282 (341)
Q Consensus 230 ~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~aGl~~~~k~~~~~~rVigVe~~ 282 (341)
.+.++.++++ ..+||+..-||.|+.-+++ +.|++.|++|...
T Consensus 7 aa~~~A~~~~-------ak~Ivv~T~sG~ta~~isk----~RP~~pIiavt~~ 48 (117)
T PF02887_consen 7 AAVELAEDLN-------AKAIVVFTESGRTARLISK----YRPKVPIIAVTPN 48 (117)
T ss_dssp HHHHHHHHHT-------ESEEEEE-SSSHHHHHHHH----T-TSSEEEEEESS
T ss_pred HHHHHHHhcC-------CCEEEEECCCchHHHHHHh----hCCCCeEEEEcCc
Confidence 4567777764 6799999999998765543 4589999998765
No 439
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=22.10 E-value=1.4e+02 Score=28.66 Aligned_cols=50 Identities=22% Similarity=0.469 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCCC-CEEEEcCCchhHHHHHHHHHhcCCCCCeEE
Q 019410 226 GYIEAIKEIEQQLQTGTGGVKF-DDIVVACGSGGTIAGLSLGSWLGTLKAKVH 277 (341)
Q Consensus 226 G~~t~a~EI~~Ql~~~~~g~~~-D~Ivv~vGtGGt~aGl~~~~k~~~~~~rVi 277 (341)
|+..=..||..|+.+. +... +-+++.||+|-+++=++.++...+++++|+
T Consensus 216 g~~k~~edl~~~f~~~--~l~~~~p~~~sC~~Gisa~~i~~al~r~g~~~~lY 266 (286)
T KOG1529|consen 216 GFIKPAEDLKHLFAQK--GLKLSKPVIVSCGTGISASIIALALERSGPDAKLY 266 (286)
T ss_pred cccCCHHHHHHHHHhc--CcccCCCEEEeeccchhHHHHHHHHHhcCCCccee
Confidence 4432267888877642 1111 348999999999999999998877777775
No 440
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=22.07 E-value=4.6e+02 Score=26.28 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=15.1
Q ss_pred HHHHHHHHhcCCCCCCCCEEEEcCCchhHH
Q 019410 231 IKEIEQQLQTGTGGVKFDDIVVACGSGGTI 260 (341)
Q Consensus 231 a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~ 260 (341)
..|+.+++.+ ..+|. |+++|+|..+
T Consensus 69 v~~~~~~~~~----~~~D~-IIaiGGGSvi 93 (414)
T cd08190 69 FKDAIAFAKK----GQFDA-FVAVGGGSVI 93 (414)
T ss_pred HHHHHHHHHh----cCCCE-EEEeCCccHH
Confidence 3455555543 34665 6778887654
No 441
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=22.03 E-value=5.6e+02 Score=22.68 Aligned_cols=41 Identities=5% Similarity=-0.078 Sum_probs=20.2
Q ss_pred HHHHHHHHcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEE
Q 019410 111 FLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLIL 153 (341)
Q Consensus 111 ~ll~~A~~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivv 153 (341)
.+.....+.|.+.++. +-. .-....++......|.++..+.
T Consensus 15 ~la~~l~~~G~~v~~~-~r~-~~~~~~~~~~l~~~~~~~~~~~ 55 (254)
T TIGR02415 15 GIAERLAKDGFAVAVA-DLN-EETAKETAKEINQAGGKAVAYK 55 (254)
T ss_pred HHHHHHHHCCCEEEEE-eCC-HHHHHHHHHHHHhcCCeEEEEE
Confidence 3455555677754443 222 2233344444555676665543
No 442
>PRK06753 hypothetical protein; Provisional
Probab=21.98 E-value=1.3e+02 Score=28.98 Aligned_cols=29 Identities=17% Similarity=0.092 Sum_probs=23.2
Q ss_pred EEEeCCCcchHHHHHHHHHHHcCCeEEEEEc
Q 019410 124 IITIGGIQSNHCRAAAVAAKYLNLDCYLILR 154 (341)
Q Consensus 124 vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp 154 (341)
|+-.|| |=.|.++|...++.|++++|+=.
T Consensus 3 V~IvGg--G~aGl~~A~~L~~~g~~v~v~E~ 31 (373)
T PRK06753 3 IAIIGA--GIGGLTAAALLQEQGHEVKVFEK 31 (373)
T ss_pred EEEECC--CHHHHHHHHHHHhCCCcEEEEec
Confidence 344565 78999999999999999887743
No 443
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=21.96 E-value=3e+02 Score=25.41 Aligned_cols=47 Identities=13% Similarity=0.082 Sum_probs=31.6
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEE
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHI 180 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV 180 (341)
+.|+..|+ .|-.|.+++..|+.+|.+.+++.+.. .+...++.+|++-
T Consensus 144 ~~vlI~g~-~~~~g~~~~~la~~~g~~v~~~~~~~-----------~~~~~~~~~g~~~ 190 (324)
T cd08244 144 DVVLVTAA-AGGLGSLLVQLAKAAGATVVGAAGGP-----------AKTALVRALGADV 190 (324)
T ss_pred CEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCH-----------HHHHHHHHcCCCE
Confidence 45555554 47899999999999999865553321 1355567788754
No 444
>PRK07121 hypothetical protein; Validated
Probab=21.95 E-value=1.2e+02 Score=30.95 Aligned_cols=30 Identities=20% Similarity=0.248 Sum_probs=24.5
Q ss_pred CCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEE
Q 019410 121 ADCIITIGGIQSNHCRAAAVAAKYLNLDCYLIL 153 (341)
Q Consensus 121 ~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivv 153 (341)
+|.|| .|+ |..|.+.|+.|++.|.+++++=
T Consensus 21 ~DVvV-VGa--G~AGl~AA~~aae~G~~VillE 50 (492)
T PRK07121 21 ADVVV-VGF--GAAGACAAIEAAAAGARVLVLE 50 (492)
T ss_pred cCEEE-ECc--CHHHHHHHHHHHHCCCeEEEEe
Confidence 56555 565 8999999999999999888774
No 445
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=21.92 E-value=2.3e+02 Score=26.65 Aligned_cols=47 Identities=17% Similarity=0.221 Sum_probs=31.9
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcC-CeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEE
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLN-LDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIE 181 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~G-l~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~ 181 (341)
++|+..| . |..|.+++..|+.+| .+.+++.+.. .+...++.+|++-+
T Consensus 169 ~~vlI~g-~-~~vg~~~~~~a~~~g~~~v~~~~~~~-----------~~~~~~~~~g~~~~ 216 (340)
T cd05284 169 STVVVIG-V-GGLGHIAVQILRALTPATVIAVDRSE-----------EALKLAERLGADHV 216 (340)
T ss_pred CEEEEEc-C-cHHHHHHHHHHHHhCCCcEEEEeCCH-----------HHHHHHHHhCCcEE
Confidence 4555556 3 349999999999999 7766554321 24667788997543
No 446
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=21.92 E-value=5.7e+02 Score=23.25 Aligned_cols=91 Identities=15% Similarity=0.169 Sum_probs=54.1
Q ss_pred HHHHHHcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCccccccC
Q 019410 113 MADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIG 192 (341)
Q Consensus 113 l~~A~~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~ 192 (341)
++.|.+.|.+=+|+- +.-..+..+|++.|+. ++|.... ...+.....+|++++-+-... ..+
T Consensus 81 ~~~a~~aGA~FivsP-----~~~~~v~~~~~~~~i~---~iPG~~T--------~~E~~~A~~~Gad~vklFPa~--~~G 142 (213)
T PRK06552 81 ARLAILAGAQFIVSP-----SFNRETAKICNLYQIP---YLPGCMT--------VTEIVTALEAGSEIVKLFPGS--TLG 142 (213)
T ss_pred HHHHHHcCCCEEECC-----CCCHHHHHHHHHcCCC---EECCcCC--------HHHHHHHHHcCCCEEEECCcc--cCC
Confidence 566778898888864 3446788889999985 4565542 123566667999987773211 111
Q ss_pred cHHHHHHHHHHHHHhCCCcEEeCCCCCchhHHHH
Q 019410 193 SVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWG 226 (341)
Q Consensus 193 ~~~~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G 226 (341)
..++..+ +.--+..-++|-||-|..+...
T Consensus 143 -~~~ik~l----~~~~p~ip~~atGGI~~~N~~~ 171 (213)
T PRK06552 143 -PSFIKAI----KGPLPQVNVMVTGGVNLDNVKD 171 (213)
T ss_pred -HHHHHHH----hhhCCCCEEEEECCCCHHHHHH
Confidence 2333333 2212234567888877665433
No 447
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=21.88 E-value=1.1e+02 Score=31.35 Aligned_cols=31 Identities=23% Similarity=0.308 Sum_probs=24.5
Q ss_pred CCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEE
Q 019410 120 GADCIITIGGIQSNHCRAAAVAAKYLNLDCYLIL 153 (341)
Q Consensus 120 g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivv 153 (341)
.+|.|| .|+ |..|.+.|+.|++.|.+++|+=
T Consensus 61 ~~DVvV-VG~--G~AGl~AAi~Aa~~Ga~VivlE 91 (506)
T PRK06481 61 KYDIVI-VGA--GGAGMSAAIEAKDAGMNPVILE 91 (506)
T ss_pred cCCEEE-ECc--CHHHHHHHHHHHHCCCCEEEEE
Confidence 356555 565 7999999999999999877764
No 448
>COG1335 PncA Amidases related to nicotinamidase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.88 E-value=2.1e+02 Score=25.09 Aligned_cols=53 Identities=23% Similarity=0.273 Sum_probs=34.9
Q ss_pred CchHhHHHHHHHHHHHHcCCCeEEEeCCCcchHHH-HHHHHHHHcCCeEEEEEcCCCC
Q 019410 102 SGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCR-AAAVAAKYLNLDCYLILRTSKV 158 (341)
Q Consensus 102 ggnK~Rkl~~ll~~A~~~g~~~vVt~G~s~GNhg~-AlA~aa~~~Gl~~~ivvp~~~~ 158 (341)
++|..-.|..+++ .+|.++|+.+| ...++|. +.|.-|..+|++++++.+....
T Consensus 117 saF~~T~L~~~Lr---~~~i~~l~v~G-~~td~CV~~T~~~A~~~gy~v~v~~da~~~ 170 (205)
T COG1335 117 SAFAGTDLDDILR---NLGIDTVVVCG-IATDICVLATARDAFDLGYQVTLVEDATAG 170 (205)
T ss_pred CcccCCCHHHHHH---HCCCCEEEEee-eehhHHHHHHHHHHHHCCCeEEEehhhccc
Confidence 3343334444443 47899999876 4557775 5566677799999999876543
No 449
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=21.85 E-value=4.3e+02 Score=25.65 Aligned_cols=75 Identities=16% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHhCCCEEEEECCccccccCcHHHHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEE
Q 019410 171 LVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDI 250 (341)
Q Consensus 171 ~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~I 250 (341)
..++.+|.++.++.+.. ......+++.+.+++.+-...+..+.+ +|.- ....++.+++.+ .++| +
T Consensus 16 ~~~~~~g~~~liv~~~~----~~~~~~~~v~~~l~~~~i~~~~~~~~~-~p~~-----~~v~~~~~~~~~----~~~d-~ 80 (349)
T cd08550 16 AILSTFGSKVAVVGGKT----VLKKSRPRFEAALAKSIIVVDVIVFGG-ECST-----EEVVKALCGAEE----QEAD-V 80 (349)
T ss_pred HHHHHcCCeEEEEEChH----HHHHHHHHHHHHHHhcCCeeEEEEcCC-CCCH-----HHHHHHHHHHHh----cCCC-E
Q ss_pred EEcCCchhHH
Q 019410 251 VVACGSGGTI 260 (341)
Q Consensus 251 vv~vGtGGt~ 260 (341)
|+++|+|..+
T Consensus 81 IIavGGGs~~ 90 (349)
T cd08550 81 IIGVGGGKTL 90 (349)
T ss_pred EEEecCcHHH
No 450
>PRK05434 phosphoglyceromutase; Provisional
Probab=21.83 E-value=5.9e+02 Score=26.56 Aligned_cols=49 Identities=22% Similarity=0.186 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHcCC----CeEEEeCCCcc--hHHHHHHHHHHHcCC-e--EEEEEcCC
Q 019410 108 KLEFLMADAVAQGA----DCIITIGGIQS--NHCRAAAVAAKYLNL-D--CYLILRTS 156 (341)
Q Consensus 108 kl~~ll~~A~~~g~----~~vVt~G~s~G--Nhg~AlA~aa~~~Gl-~--~~ivvp~~ 156 (341)
.+..++..+.+.+. -++++-||..| +|..++.-.|+..|+ + .|++++..
T Consensus 97 ~~~~~~~~~~~~~~~lHl~GL~SdggVHsh~~hl~~l~~~a~~~g~~~v~vH~~~DGR 154 (507)
T PRK05434 97 ALLDAIDKAKKNGGALHLMGLLSDGGVHSHIDHLFALLELAKEEGVKKVYVHAFLDGR 154 (507)
T ss_pred HHHHHHHHHHhcCCeEEEEEeccCCCcccHHHHHHHHHHHHHHcCCCEEEEEEecCCC
Confidence 45667777766553 24567788777 899999999999999 3 46677654
No 451
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=21.83 E-value=5.4e+02 Score=22.40 Aligned_cols=33 Identities=18% Similarity=0.194 Sum_probs=24.0
Q ss_pred eEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCC
Q 019410 123 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTS 156 (341)
Q Consensus 123 ~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~ 156 (341)
+++..|+ +|.-|.++|......|.+.+++.+..
T Consensus 8 ~vlItGa-sg~iG~~l~~~l~~~g~~v~~~~~~~ 40 (249)
T PRK12825 8 VALVTGA-ARGLGRAIALRLARAGADVVVHYRSD 40 (249)
T ss_pred EEEEeCC-CchHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3443454 57899999999999999876665543
No 452
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=21.70 E-value=1.2e+02 Score=29.52 Aligned_cols=30 Identities=20% Similarity=0.175 Sum_probs=24.2
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEc
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 154 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp 154 (341)
+.+| .|| |-.|.++|.+.++.|++++||=.
T Consensus 5 dv~I-vGg--G~aGl~~A~~L~~~G~~v~l~E~ 34 (384)
T PRK08849 5 DIAV-VGG--GMVGAATALGFAKQGRSVAVIEG 34 (384)
T ss_pred cEEE-ECc--CHHHHHHHHHHHhCCCcEEEEcC
Confidence 3444 465 78999999999999999988853
No 453
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=21.69 E-value=3.6e+02 Score=27.11 Aligned_cols=56 Identities=23% Similarity=0.316 Sum_probs=36.0
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCC-eEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEE
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNL-DCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 182 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl-~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~ 182 (341)
++|+..|+ ||.|.-+|..+.++|. +++++.+...... +.....+..++..|.+++.
T Consensus 274 ~~VvViGg--G~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~---~~~~~~~~~~~~~GV~i~~ 330 (457)
T PRK11749 274 KRVVVIGG--GNTAMDAARTAKRLGAESVTIVYRRGREEM---PASEEEVEHAKEEGVEFEW 330 (457)
T ss_pred CeEEEECC--CHHHHHHHHHHHHcCCCeEEEeeecCcccC---CCCHHHHHHHHHCCCEEEe
Confidence 45665675 7999999999999999 6777765432110 0011224556678887764
No 454
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=21.69 E-value=3.9e+02 Score=24.35 Aligned_cols=47 Identities=13% Similarity=-0.001 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHc-C----CCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcC
Q 019410 107 RKLEFLMADAVAQ-G----ADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 155 (341)
Q Consensus 107 Rkl~~ll~~A~~~-g----~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~ 155 (341)
|+..+.++.+.+. + ..+|+..| .||-|+.+|....++|.+.+.+.+.
T Consensus 4 ~Gv~~~~~~~~~~~~~~l~g~~vaIqG--fGnVG~~~a~~L~~~G~~vV~vsD~ 55 (217)
T cd05211 4 YGVVVAMKAAMKHLGDSLEGLTVAVQG--LGNVGWGLAKKLAEEGGKVLAVSDP 55 (217)
T ss_pred hHHHHHHHHHHHHcCCCcCCCEEEEEC--CCHHHHHHHHHHHHcCCEEEEEEcC
Confidence 3444555554332 2 24566566 4899999999999999998888764
No 455
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=21.66 E-value=2.7e+02 Score=27.36 Aligned_cols=53 Identities=17% Similarity=0.202 Sum_probs=26.0
Q ss_pred HHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHH
Q 019410 198 NILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTI 260 (341)
Q Consensus 198 ~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~ 260 (341)
+++.+.+.+.+-...++.....||.- ....|+.+++.+ .++| +|+++|+|+.+
T Consensus 42 ~~v~~~L~~~g~~~~~~~~v~~~p~~-----~~v~~~~~~~~~----~~~D-~IIavGGGSvi 94 (375)
T cd08179 42 DKVEAYLKEAGIEVEVFEGVEPDPSV-----ETVLKGAEAMRE----FEPD-WIIALGGGSPI 94 (375)
T ss_pred HHHHHHHHHcCCeEEEeCCCCCCcCH-----HHHHHHHHHHHh----cCCC-EEEEeCCccHH
Confidence 44555565544223333322234432 233455555543 3465 46778887653
No 456
>PRK12939 short chain dehydrogenase; Provisional
Probab=21.64 E-value=5.6e+02 Score=22.52 Aligned_cols=71 Identities=15% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHHHhCCCEEEEECCccccccCcHHHHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCE
Q 019410 170 LLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDD 249 (341)
Q Consensus 170 ~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~ 249 (341)
.+.+...|++|+.+.+.. +......++++..+.+..+++.+-.++.. ...+..++.++.. .+|.
T Consensus 24 a~~l~~~G~~v~~~~r~~-------~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~---~~~~~~~~~~~~~------~id~ 87 (250)
T PRK12939 24 AEALAEAGATVAFNDGLA-------AEARELAAALEAAGGRAHAIAADLADPAS---VQRFFDAAAAALG------GLDG 87 (250)
T ss_pred HHHHHHcCCEEEEEeCCH-------HHHHHHHHHHHhcCCcEEEEEccCCCHHH---HHHHHHHHHHHcC------CCCE
Q ss_pred EEEcCCc
Q 019410 250 IVVACGS 256 (341)
Q Consensus 250 Ivv~vGt 256 (341)
||..+|.
T Consensus 88 vi~~ag~ 94 (250)
T PRK12939 88 LVNNAGI 94 (250)
T ss_pred EEECCCC
No 457
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=21.62 E-value=51 Score=29.47 Aligned_cols=39 Identities=21% Similarity=0.229 Sum_probs=31.4
Q ss_pred EEEcCCchhHHHHHHHHHhcCCCCCeEEEEeeCCCCccchH
Q 019410 250 IVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYD 290 (341)
Q Consensus 250 Ivv~vGtGGt~aGl~~~~k~~~~~~rVigVe~~g~~~~~~~ 290 (341)
-++.+|||+.+=|+..++.. |+.+++-||..+....+.+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~--p~~~~~LvEs~~KK~~FL~ 89 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIAR--PDLQVTLVESVGKKVAFLK 89 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH---TTSEEEEEESSHHHHHHHH
T ss_pred eEEecCCCCCChhHHHHHhC--CCCcEEEEeCCchHHHHHH
Confidence 49999999999999988864 8999999998876543333
No 458
>PRK06500 short chain dehydrogenase; Provisional
Probab=21.61 E-value=2.9e+02 Score=24.41 Aligned_cols=31 Identities=23% Similarity=0.108 Sum_probs=23.2
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEc
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 154 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp 154 (341)
..+|| |+ +|--|.++|......|.+++++.+
T Consensus 8 ~vlIt-Ga-sg~iG~~la~~l~~~g~~v~~~~r 38 (249)
T PRK06500 8 TALIT-GG-TSGIGLETARQFLAEGARVAITGR 38 (249)
T ss_pred EEEEe-CC-CchHHHHHHHHHHHCCCEEEEecC
Confidence 34444 44 479999999999999998776644
No 459
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=21.50 E-value=3.9e+02 Score=27.38 Aligned_cols=58 Identities=14% Similarity=0.145 Sum_probs=38.6
Q ss_pred CCCeEEEeCCCcchHHHHHHHHHHHc------CC----eEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECC
Q 019410 120 GADCIITIGGIQSNHCRAAAVAAKYL------NL----DCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISK 185 (341)
Q Consensus 120 g~~~vVt~G~s~GNhg~AlA~aa~~~------Gl----~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~ 185 (341)
...+.+|.|||.+|....+|+-.+.. +. +..||+|.... ..-.+.++.+|.++..++.
T Consensus 119 ~~~G~~t~GgTean~lal~aar~~~~~~~~~~~~~~~~~P~ii~s~~aH--------~s~~Kaa~~lG~~~~~v~~ 186 (460)
T COG0076 119 EASGTFTSGGTEANLLALLAARERWRKRALAESGKPGGKPNIVCSETAH--------FSFEKAARYLGLGLRRVPT 186 (460)
T ss_pred CCceEEEcChHHHHHHHHHHHHHHHHHHhhhcccccCCCCeEEecCcch--------hHHHHHHHHhCCCceeEEe
Confidence 34678899999999966666554442 11 22788887663 2346778888888766653
No 460
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=21.47 E-value=5.8e+02 Score=22.69 Aligned_cols=32 Identities=22% Similarity=0.111 Sum_probs=24.9
Q ss_pred CCEEEEcCCchhHHHHHHHHHhcCCC----CCeEEEEe
Q 019410 247 FDDIVVACGSGGTIAGLSLGSWLGTL----KAKVHAFS 280 (341)
Q Consensus 247 ~D~Ivv~vGtGGt~aGl~~~~k~~~~----~~rVigVe 280 (341)
+|+||++ +...+.|+..++++.+. ++.|+|++
T Consensus 182 ~~ai~~~--~d~~a~g~~~~l~~~g~~ip~di~ii~~d 217 (273)
T cd06292 182 PTAIVAA--SDLMALGAIRAARRRGLRVPEDVSVVGYD 217 (273)
T ss_pred CCEEEEc--CcHHHHHHHHHHHHcCCCCCcceEEEeeC
Confidence 8988864 56778899999988764 56788775
No 461
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=21.37 E-value=1.3e+02 Score=28.94 Aligned_cols=27 Identities=15% Similarity=0.016 Sum_probs=21.7
Q ss_pred EeCCCcchHHHHHHHHHHHcCCeEEEEEc
Q 019410 126 TIGGIQSNHCRAAAVAAKYLNLDCYLILR 154 (341)
Q Consensus 126 t~G~s~GNhg~AlA~aa~~~Gl~~~ivvp 154 (341)
..|| |-.|.++|+..++.|++++|+=+
T Consensus 5 IIGa--Gi~G~s~A~~La~~g~~V~l~e~ 31 (380)
T TIGR01377 5 VVGA--GIMGCFAAYHLAKHGKKTLLLEQ 31 (380)
T ss_pred EECC--CHHHHHHHHHHHHCCCeEEEEec
Confidence 3465 78999999999999999777633
No 462
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=21.35 E-value=5.7e+02 Score=22.57 Aligned_cols=79 Identities=14% Similarity=0.009 Sum_probs=45.6
Q ss_pred hHhHHHHHHHHHHHHcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCC-cCCCCCcchhHHHHHhCCCEEEE
Q 019410 104 NKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVL-VDQDPGLIGNLLVERLVGAHIEL 182 (341)
Q Consensus 104 nK~Rkl~~ll~~A~~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~-~~~~~~~~gn~~~~~~~GAeV~~ 182 (341)
|-++.++-.+++|.+.|.+.+|.+ |++|-++.-++-+.. -.++.++|.-..--. ..+..-...-...++..||+|..
T Consensus 11 NT~~tle~a~erA~elgik~~vVA-S~tG~tA~k~lemve-g~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa~v~~ 88 (186)
T COG1751 11 NTDETLEIAVERAKELGIKHIVVA-SSTGYTALKALEMVE-GDLKVVVVTHHAGFEEKGTQEMDEEVRKELKERGAKVLT 88 (186)
T ss_pred chHHHHHHHHHHHHhcCcceEEEE-ecccHHHHHHHHhcc-cCceEEEEEeecccccCCceecCHHHHHHHHHcCceeee
Confidence 567888888999999999998875 456676655443332 227777765321100 00000012234566677777765
Q ss_pred EC
Q 019410 183 IS 184 (341)
Q Consensus 183 v~ 184 (341)
-+
T Consensus 89 ~s 90 (186)
T COG1751 89 QS 90 (186)
T ss_pred eh
Confidence 43
No 463
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=21.34 E-value=5.6e+02 Score=22.45 Aligned_cols=54 Identities=13% Similarity=0.094 Sum_probs=33.5
Q ss_pred EEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECC
Q 019410 124 IITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISK 185 (341)
Q Consensus 124 vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~ 185 (341)
+|| |+ +|.-|.++|....+.|.+++++.+..... .......++..+.++..+.-
T Consensus 2 lIt-Ga-s~giG~~~a~~l~~~G~~v~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~ 55 (239)
T TIGR01831 2 LVT-GA-SRGIGRAIANRLAADGFEICVHYHSGRSD------AESVVSAIQAQGGNARLLQF 55 (239)
T ss_pred EEe-CC-CchHHHHHHHHHHHCCCEEEEEeCCCHHH------HHHHHHHHHHcCCeEEEEEc
Confidence 455 43 47899999999999999977665432210 01123344556777766653
No 464
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=21.33 E-value=6.9e+02 Score=23.49 Aligned_cols=94 Identities=17% Similarity=0.223 Sum_probs=48.9
Q ss_pred HHHHHHHHcCCeEEEEEcCCCCCcCCCCC-cchhHHHHHhCCCEEEEECCccccccCcHHHHHHHHHHHHHhCCCcEEe-
Q 019410 137 AAAVAAKYLNLDCYLILRTSKVLVDQDPG-LIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVI- 214 (341)
Q Consensus 137 AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~-~~gn~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~a~~l~~~g~~~~~i- 214 (341)
++.|.|+.+|++.+-++.... ....++. ...-+..++..+..++++... .. .+.++.++++. +-....+
T Consensus 188 af~Yl~~~~gl~~~~~~~~~~-~~eps~~~l~~l~~~ik~~~v~~If~e~~-~~----~~~~~~ia~~~---g~~v~~l~ 258 (286)
T cd01019 188 AYGYFEKRYGLTQAGVFTIDP-EIDPGAKRLAKIRKEIKEKGATCVFAEPQ-FH----PKIAETLAEGT---GAKVGELD 258 (286)
T ss_pred cHHHHHHHcCCceeeeecCCC-CCCCCHHHHHHHHHHHHHcCCcEEEecCC-CC----hHHHHHHHHhc---CceEEEec
Confidence 889999999999876653221 1111111 112356778899999998753 21 22333433222 2122222
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHh
Q 019410 215 PVGGSNSIGTWGYIEAIKEIEQQLQ 239 (341)
Q Consensus 215 p~g~~n~~~~~G~~t~a~EI~~Ql~ 239 (341)
|.+.........|..+..+..+++.
T Consensus 259 ~l~~~~~~~~~~Y~~~m~~n~~~i~ 283 (286)
T cd01019 259 PLGGLIELGKNSYVNFLRNLADSLA 283 (286)
T ss_pred ccccccccchhhHHHHHHHHHHHHH
Confidence 3332111112467766666666654
No 465
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=21.30 E-value=6.1e+02 Score=22.84 Aligned_cols=13 Identities=0% Similarity=-0.176 Sum_probs=9.3
Q ss_pred CCCeEEEEeeCCC
Q 019410 272 LKAKVHAFSVCDD 284 (341)
Q Consensus 272 ~~~rVigVe~~g~ 284 (341)
..++|..|.+..-
T Consensus 180 ~gi~v~~v~Pg~v 192 (265)
T PRK07097 180 ANIQCNGIGPGYI 192 (265)
T ss_pred cCceEEEEEeccc
Confidence 4688888887653
No 466
>PRK14031 glutamate dehydrogenase; Provisional
Probab=21.25 E-value=4.9e+02 Score=26.70 Aligned_cols=48 Identities=10% Similarity=0.093 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHc-CC----CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcC
Q 019410 106 VRKLEFLMADAVAQ-GA----DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 155 (341)
Q Consensus 106 ~Rkl~~ll~~A~~~-g~----~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~ 155 (341)
.|+..+.+.++.+. |. ++|+..|. ||-|..+|.....+|.+++.|-+.
T Consensus 208 g~Gv~~~~~~~~~~~g~~l~g~rVaVQGf--GNVG~~aA~~L~e~GAkVVaVSD~ 260 (444)
T PRK14031 208 GYGNIYFLMEMLKTKGTDLKGKVCLVSGS--GNVAQYTAEKVLELGGKVVTMSDS 260 (444)
T ss_pred HHHHHHHHHHHHHhcCCCcCCCEEEEECC--CHHHHHHHHHHHHCCCEEEEEECC
Confidence 36777777776543 32 45665665 899999999999999999998773
No 467
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=21.24 E-value=7e+02 Score=23.53 Aligned_cols=15 Identities=27% Similarity=0.160 Sum_probs=7.2
Q ss_pred HHHHHHHcCCeEEEE
Q 019410 138 AAVAAKYLNLDCYLI 152 (341)
Q Consensus 138 lA~aa~~~Gl~~~iv 152 (341)
+...|+..|+..+|+
T Consensus 107 F~~~~~~aGvdGlIi 121 (259)
T PF00290_consen 107 FFKEAKEAGVDGLII 121 (259)
T ss_dssp HHHHHHHHTEEEEEE
T ss_pred HHHHHHHcCCCEEEE
Confidence 344444555544444
No 468
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=21.22 E-value=2.5e+02 Score=26.56 Aligned_cols=31 Identities=16% Similarity=0.091 Sum_probs=23.2
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEc
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 154 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp 154 (341)
++++..|+ |-.++|++++.+.+|++-+.++.
T Consensus 123 ~~vlilGa--GGaarAi~~aL~~~g~~~i~i~n 153 (272)
T PRK12550 123 LVVALRGS--GGMAKAVAAALRDAGFTDGTIVA 153 (272)
T ss_pred CeEEEECC--cHHHHHHHHHHHHCCCCEEEEEe
Confidence 35555665 78999999999999997555543
No 469
>PRK07832 short chain dehydrogenase; Provisional
Probab=21.20 E-value=4.7e+02 Score=23.76 Aligned_cols=29 Identities=28% Similarity=0.316 Sum_probs=22.2
Q ss_pred EEEeCCCcchHHHHHHHHHHHcCCeEEEEEc
Q 019410 124 IITIGGIQSNHCRAAAVAAKYLNLDCYLILR 154 (341)
Q Consensus 124 vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp 154 (341)
+|| || +|--|.++|....+.|.+++++-+
T Consensus 4 lIt-Ga-s~giG~~la~~la~~G~~vv~~~r 32 (272)
T PRK07832 4 FVT-GA-ASGIGRATALRLAAQGAELFLTDR 32 (272)
T ss_pred EEe-CC-CCHHHHHHHHHHHHCCCEEEEEeC
Confidence 444 54 468999999999999998766654
No 470
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=21.10 E-value=1.2e+02 Score=31.17 Aligned_cols=29 Identities=21% Similarity=0.323 Sum_probs=24.6
Q ss_pred EEEeCCCcchHHHHHHHHHHHcCCeEEEEEc
Q 019410 124 IITIGGIQSNHCRAAAVAAKYLNLDCYLILR 154 (341)
Q Consensus 124 vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp 154 (341)
|+..|| |-.|.+.|..++++|++++++.+
T Consensus 214 vvIIGg--GpaGl~aA~~la~~G~~v~li~~ 242 (517)
T PRK15317 214 VLVVGG--GPAGAAAAIYAARKGIRTGIVAE 242 (517)
T ss_pred EEEECC--CHHHHHHHHHHHHCCCcEEEEec
Confidence 444566 78999999999999999999965
No 471
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=21.06 E-value=2.3e+02 Score=24.41 Aligned_cols=60 Identities=18% Similarity=0.118 Sum_probs=39.4
Q ss_pred HHHHHHHHcCC--CeEEEeCCCcchHHHHHHHHHHH-cCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCc
Q 019410 111 FLMADAVAQGA--DCIITIGGIQSNHCRAAAVAAKY-LNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKE 186 (341)
Q Consensus 111 ~ll~~A~~~g~--~~vVt~G~s~GNhg~AlA~aa~~-~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~ 186 (341)
..+.++...|. ..|+.|| +|++++++|.+ .|++|.++.+... -...-+...|+|+..+..
T Consensus 46 ~~va~~V~~~~~~~GIliCG-----tGiG~siaANK~~GIraa~~~d~~~-----------A~~ar~hNnaNvl~lG~r 108 (143)
T TIGR01120 46 KQVALAVAGGEVDGGILICG-----TGIGMSIAANKFAGIRAALCSEPYM-----------AQMSRLHNDANVLCLGER 108 (143)
T ss_pred HHHHHHHHCCCCceEEEEcC-----CcHHHHHHHhcCCCeEEEEECCHHH-----------HHHHHHhcCCcEEEECcc
Confidence 34555555552 4566665 48889988887 8999999965432 123334568999998853
No 472
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=21.01 E-value=1.2e+02 Score=30.11 Aligned_cols=27 Identities=22% Similarity=0.260 Sum_probs=21.4
Q ss_pred EEeCCCcchHHHHHHHHHHHcC-CeEEEEE
Q 019410 125 ITIGGIQSNHCRAAAVAAKYLN-LDCYLIL 153 (341)
Q Consensus 125 Vt~G~s~GNhg~AlA~aa~~~G-l~~~ivv 153 (341)
|..|+ |..|.+.|+.|++.| .+++|+=
T Consensus 3 vVVG~--G~AGl~AA~~aa~~G~~~V~vlE 30 (439)
T TIGR01813 3 VVVGS--GFAGLSAALSAKKAGAANVVLLE 30 (439)
T ss_pred EEECC--CHHHHHHHHHHHHcCCccEEEEe
Confidence 33565 789999999999999 8777663
No 473
>PRK09492 treR trehalose repressor; Provisional
Probab=20.93 E-value=6.6e+02 Score=23.11 Aligned_cols=33 Identities=15% Similarity=-0.029 Sum_probs=24.0
Q ss_pred CCCEEEEcCCchhHHHHHHHHHhcCCC-CCeEEEEe
Q 019410 246 KFDDIVVACGSGGTIAGLSLGSWLGTL-KAKVHAFS 280 (341)
Q Consensus 246 ~~D~Ivv~vGtGGt~aGl~~~~k~~~~-~~rVigVe 280 (341)
.||+||+.. -..+.|+..++++.|. ++.|+|++
T Consensus 232 ~~~ai~~~~--D~~A~g~~~al~~~g~~disvig~d 265 (315)
T PRK09492 232 ETTALVCAT--DTLALGASKYLQEQGRDDIQVAGVG 265 (315)
T ss_pred CCCEEEEcC--cHHHHHHHHHHHHcCCCceEEEeeC
Confidence 589988644 4677899999988764 56666654
No 474
>PRK07060 short chain dehydrogenase; Provisional
Probab=20.89 E-value=2.9e+02 Score=24.38 Aligned_cols=31 Identities=29% Similarity=0.262 Sum_probs=23.5
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEc
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 154 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp 154 (341)
+.+|+ |+ +|.-|..+|......|.+++++.+
T Consensus 11 ~~lIt-Ga-~g~iG~~~a~~l~~~g~~V~~~~r 41 (245)
T PRK07060 11 SVLVT-GA-SSGIGRACAVALAQRGARVVAAAR 41 (245)
T ss_pred EEEEe-CC-cchHHHHHHHHHHHCCCEEEEEeC
Confidence 34454 44 478999999999999998777654
No 475
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=20.84 E-value=1.2e+02 Score=32.21 Aligned_cols=31 Identities=26% Similarity=0.371 Sum_probs=24.5
Q ss_pred CCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEc
Q 019410 121 ADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 154 (341)
Q Consensus 121 ~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp 154 (341)
.+.|| .|| |-+|.++|+.+++.|+++.++=.
T Consensus 72 ~DVvV-IGG--Gi~Ga~~A~~lA~rGl~V~LvE~ 102 (627)
T PLN02464 72 LDVLV-VGG--GATGAGVALDAATRGLRVGLVER 102 (627)
T ss_pred cCEEE-ECC--CHHHHHHHHHHHhCCCEEEEEec
Confidence 46555 565 78999999999999999776643
No 476
>PRK10083 putative oxidoreductase; Provisional
Probab=20.80 E-value=3.1e+02 Score=25.76 Aligned_cols=49 Identities=14% Similarity=0.144 Sum_probs=34.0
Q ss_pred CeEEEeCCCcchHHHHHHHHHHH-cCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEE
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKY-LNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 182 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~-~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~ 182 (341)
++|+..| . |--|.+++..|+. +|.+.++++.... .+..+++.+|++-++
T Consensus 162 ~~vlI~g-~-g~vG~~~~~~a~~~~G~~~v~~~~~~~----------~~~~~~~~~Ga~~~i 211 (339)
T PRK10083 162 DVALIYG-A-GPVGLTIVQVLKGVYNVKAVIVADRID----------ERLALAKESGADWVI 211 (339)
T ss_pred CEEEEEC-C-CHHHHHHHHHHHHhCCCCEEEEEcCCH----------HHHHHHHHhCCcEEe
Confidence 5666666 3 6678888888886 6998777664322 357778889996544
No 477
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=20.76 E-value=4.1e+02 Score=23.96 Aligned_cols=31 Identities=19% Similarity=0.122 Sum_probs=23.3
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEc
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 154 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp 154 (341)
..+|| |+ +|.-|.++|....+.|.+++++-+
T Consensus 7 ~vlIt-Ga-s~gIG~~ia~~l~~~G~~V~~~~r 37 (262)
T TIGR03325 7 VVLVT-GG-ASGLGRAIVDRFVAEGARVAVLDK 37 (262)
T ss_pred EEEEE-CC-CChHHHHHHHHHHHCCCEEEEEeC
Confidence 34454 54 478999999999999999777643
No 478
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=20.72 E-value=2.4e+02 Score=27.06 Aligned_cols=36 Identities=36% Similarity=0.437 Sum_probs=26.8
Q ss_pred HHcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEE
Q 019410 117 VAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLI 152 (341)
Q Consensus 117 ~~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~iv 152 (341)
+++.+|.++..||..|+..+-|+..|+..|.+++.+
T Consensus 206 La~~vD~miVIGg~~SsNT~kL~eia~~~~~~t~~I 241 (281)
T PF02401_consen 206 LAKEVDAMIVIGGKNSSNTRKLAEIAKEHGKPTYHI 241 (281)
T ss_dssp HHCCSSEEEEES-TT-HHHHHHHHHHHHCTTCEEEE
T ss_pred HHhhCCEEEEecCCCCccHHHHHHHHHHhCCCEEEe
Confidence 345678877788888888888999999888877766
No 479
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=20.72 E-value=2.5e+02 Score=28.59 Aligned_cols=29 Identities=10% Similarity=0.140 Sum_probs=21.4
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEE
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLI 152 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~iv 152 (341)
++|+..|. |+-|+++|..++.+|.+++++
T Consensus 213 k~VlViG~--G~IG~~vA~~lr~~Ga~ViV~ 241 (425)
T PRK05476 213 KVVVVAGY--GDVGKGCAQRLRGLGARVIVT 241 (425)
T ss_pred CEEEEECC--CHHHHHHHHHHHhCCCEEEEE
Confidence 45555664 789999999999999874443
No 480
>PRK07832 short chain dehydrogenase; Provisional
Probab=20.71 E-value=6.3e+02 Score=22.88 Aligned_cols=71 Identities=13% Similarity=-0.012 Sum_probs=38.5
Q ss_pred HHHHhCCCEEEEECCccccccCcHHHHHHHHHHHHHhCCCc-EEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCE
Q 019410 171 LVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRP-YVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDD 249 (341)
Q Consensus 171 ~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~a~~l~~~g~~~-~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~ 249 (341)
+.+...|++|+.+.+.. +..+...+++...+... .+++.+-.++.. ...+..|+.++. ..+|.
T Consensus 18 ~~la~~G~~vv~~~r~~-------~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~---~~~~~~~~~~~~------~~id~ 81 (272)
T PRK07832 18 LRLAAQGAELFLTDRDA-------DGLAQTVADARALGGTVPEHRALDISDYDA---VAAFAADIHAAH------GSMDV 81 (272)
T ss_pred HHHHHCCCEEEEEeCCH-------HHHHHHHHHHHhcCCCcceEEEeeCCCHHH---HHHHHHHHHHhc------CCCCE
Confidence 34455799998887532 11233344444333222 233444444443 334455666654 36899
Q ss_pred EEEcCCch
Q 019410 250 IVVACGSG 257 (341)
Q Consensus 250 Ivv~vGtG 257 (341)
||..+|.+
T Consensus 82 lv~~ag~~ 89 (272)
T PRK07832 82 VMNIAGIS 89 (272)
T ss_pred EEECCCCC
Confidence 99999864
No 481
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=20.68 E-value=4.4e+02 Score=26.10 Aligned_cols=45 Identities=20% Similarity=0.131 Sum_probs=34.3
Q ss_pred CcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECC
Q 019410 130 IQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISK 185 (341)
Q Consensus 130 s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~ 185 (341)
..| .|.---.+|+.+|++++++-.... .+-..++.+|||..++..
T Consensus 190 lGG-LGh~aVq~AKAMG~rV~vis~~~~----------kkeea~~~LGAd~fv~~~ 234 (360)
T KOG0023|consen 190 LGG-LGHMAVQYAKAMGMRVTVISTSSK----------KKEEAIKSLGADVFVDST 234 (360)
T ss_pred Ccc-cchHHHHHHHHhCcEEEEEeCCch----------hHHHHHHhcCcceeEEec
Confidence 334 777777889999999999865432 256789999999888764
No 482
>KOG1468 consensus Predicted translation initiation factor related to eIF-2B alpha/beta/delta subunits (CIG2/IDI2) [Translation, ribosomal structure and biogenesis]
Probab=20.68 E-value=1.1e+02 Score=29.55 Aligned_cols=39 Identities=18% Similarity=0.161 Sum_probs=29.4
Q ss_pred HHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECC
Q 019410 135 CRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISK 185 (341)
Q Consensus 135 g~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~ 185 (341)
...||..|+++|++++++.|-+. +...-.-|-+++.-++
T Consensus 256 Ty~LAv~aKhhgipFyvaaP~ts------------id~~l~tG~eIiIEER 294 (354)
T KOG1468|consen 256 TYQLAVLAKHHGIPFYVAAPFTS------------IDLSLATGDEIIIEER 294 (354)
T ss_pred hhHHHHHHHhcCCceEEeccccc------------cccccCCCCeeEEeec
Confidence 36899999999999999998654 3334456777776554
No 483
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=20.65 E-value=1.3e+02 Score=30.92 Aligned_cols=32 Identities=25% Similarity=0.229 Sum_probs=24.8
Q ss_pred CCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcC
Q 019410 121 ADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 155 (341)
Q Consensus 121 ~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~ 155 (341)
.+.|| .|| |-.|.++|+.+++.|+++.++=..
T Consensus 7 ~DVvI-IGG--Gi~G~~~A~~la~rG~~V~LlEk~ 38 (502)
T PRK13369 7 YDLFV-IGG--GINGAGIARDAAGRGLKVLLCEKD 38 (502)
T ss_pred cCEEE-ECC--CHHHHHHHHHHHhCCCcEEEEECC
Confidence 35455 565 789999999999999997777544
No 484
>PRK05855 short chain dehydrogenase; Validated
Probab=20.64 E-value=5.3e+02 Score=26.06 Aligned_cols=70 Identities=16% Similarity=0.039 Sum_probs=0.0
Q ss_pred HHHHHhCCCEEEEECCccccccCcHHHHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCE
Q 019410 170 LLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDD 249 (341)
Q Consensus 170 ~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~ 249 (341)
.+.+...|++|+.+.+.. ...+++++++...+....+++.+-.++.. ...+..++.++.+ .+|.
T Consensus 332 a~~l~~~G~~v~~~~r~~-------~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~---~~~~~~~~~~~~g------~id~ 395 (582)
T PRK05855 332 ALAFAREGAEVVASDIDE-------AAAERTAELIRAAGAVAHAYRVDVSDADA---MEAFAEWVRAEHG------VPDI 395 (582)
T ss_pred HHHHHHCCCEEEEEeCCH-------HHHHHHHHHHHhcCCeEEEEEcCCCCHHH---HHHHHHHHHHhcC------CCcE
Q ss_pred EEEcCC
Q 019410 250 IVVACG 255 (341)
Q Consensus 250 Ivv~vG 255 (341)
+|..+|
T Consensus 396 lv~~Ag 401 (582)
T PRK05855 396 VVNNAG 401 (582)
T ss_pred EEECCc
No 485
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.58 E-value=2.5e+02 Score=25.20 Aligned_cols=34 Identities=12% Similarity=0.005 Sum_probs=25.4
Q ss_pred CCCEEEEcCCchhHHHHHHHHHhcCCC----CCeEEEEee
Q 019410 246 KFDDIVVACGSGGTIAGLSLGSWLGTL----KAKVHAFSV 281 (341)
Q Consensus 246 ~~D~Ivv~vGtGGt~aGl~~~~k~~~~----~~rVigVe~ 281 (341)
++|+||++ +..++.|+..+++..+. ++.|+|++-
T Consensus 171 ~~~ai~~~--~d~~a~g~~~~l~~~g~~vp~di~vigfd~ 208 (265)
T cd01543 171 KPVGIFAC--TDARARQLLEACRRAGIAVPEEVAVLGVDN 208 (265)
T ss_pred CCcEEEec--ChHHHHHHHHHHHHhCCCCCCceEEEeeCC
Confidence 58888875 55678888889987653 678888773
No 486
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=20.49 E-value=7.4e+02 Score=23.54 Aligned_cols=96 Identities=18% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHHHhCC-CEEEEECCccccccCcHHHHHHHHHHHHHhCCCcEEeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCE
Q 019410 171 LVERLVG-AHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDD 249 (341)
Q Consensus 171 ~~~~~~G-AeV~~v~~~~~~~~~~~~~~~~~a~~l~~~g~~~~~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~ 249 (341)
..++.+| -++.++.+.. ......+++.+.+.+. -...++-.-..||.- ....++.+++.+ .++|.
T Consensus 16 ~~~~~~g~~~~liv~~~~----~~~~~~~~v~~~l~~~-~~~~~~~~~~~~p~~-----~~v~~~~~~~~~----~~~d~ 81 (332)
T cd07766 16 EEIKRGGFDRALVVSDEG----VVKGVGEKVADSLKKL-IAVHIFDGVGPNPTF-----EEVKEAVERARA----AEVDA 81 (332)
T ss_pred HHHHhcCCCeEEEEeCCc----hhhhHHHHHHHHHHhc-CcEEEeCCcCCCcCH-----HHHHHHHHHHHh----cCcCE
Q ss_pred EEEcCCchhHHHHHHHHHhcCCCCCeEEEEee
Q 019410 250 IVVACGSGGTIAGLSLGSWLGTLKAKVHAFSV 281 (341)
Q Consensus 250 Ivv~vGtGGt~aGl~~~~k~~~~~~rVigVe~ 281 (341)
|+++|+|..+=-.=.......+..+++.|..
T Consensus 82 -IIaiGGGs~~D~aK~ia~~~~~~~p~i~iPT 112 (332)
T cd07766 82 -VIAVGGGSTLDTAKAVAALLNRGLPIIIVPT 112 (332)
T ss_pred -EEEeCCchHHHHHHHHHHHhcCCCCEEEEeC
No 487
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=20.48 E-value=4.4e+02 Score=24.26 Aligned_cols=86 Identities=14% Similarity=0.110 Sum_probs=53.9
Q ss_pred HHHHHHcCCCeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCccccccC
Q 019410 113 MADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIG 192 (341)
Q Consensus 113 l~~A~~~g~~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~ 192 (341)
+++|.+.|++=+|+-+ .-..+..+|++.|+. ++|.... ...+.....+|++++.+=.... .+
T Consensus 84 a~~a~~aGA~FiVsP~-----~~~~v~~~~~~~~i~---~iPG~~T--------psEi~~A~~~Ga~~vKlFPA~~--~G 145 (222)
T PRK07114 84 AALYIQLGANFIVTPL-----FNPDIAKVCNRRKVP---YSPGCGS--------LSEIGYAEELGCEIVKLFPGSV--YG 145 (222)
T ss_pred HHHHHHcCCCEEECCC-----CCHHHHHHHHHcCCC---EeCCCCC--------HHHHHHHHHCCCCEEEECcccc--cC
Confidence 4667788989888653 456889999999974 5676553 1247777889999876643221 11
Q ss_pred cHHHHHHHHHHHHHhCCCcEEeCCCCCch
Q 019410 193 SVTLTNILKEKLLKEGRRPYVIPVGGSNS 221 (341)
Q Consensus 193 ~~~~~~~~a~~l~~~g~~~~~ip~g~~n~ 221 (341)
..++.. +..=-+..-++|.||-++
T Consensus 146 -~~~ika----l~~p~p~i~~~ptGGV~~ 169 (222)
T PRK07114 146 -PGFVKA----IKGPMPWTKIMPTGGVEP 169 (222)
T ss_pred -HHHHHH----HhccCCCCeEEeCCCCCc
Confidence 233333 321113456788888765
No 488
>PRK14057 epimerase; Provisional
Probab=20.48 E-value=4.4e+02 Score=24.90 Aligned_cols=34 Identities=9% Similarity=-0.088 Sum_probs=20.2
Q ss_pred HcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECC
Q 019410 144 YLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISK 185 (341)
Q Consensus 144 ~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~ 185 (341)
..|+.+.|-++.... ..|+..+...||++++.+.
T Consensus 189 ~~~~~~~IeVDGGI~--------~~ti~~l~~aGad~~V~GS 222 (254)
T PRK14057 189 DKREGKIIVIDGSLT--------QDQLPSLIAQGIDRVVSGS 222 (254)
T ss_pred hcCCCceEEEECCCC--------HHHHHHHHHCCCCEEEECh
Confidence 345566666666553 2356666667777666654
No 489
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=20.46 E-value=3.1e+02 Score=25.75 Aligned_cols=54 Identities=22% Similarity=0.167 Sum_probs=36.0
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEE
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELI 183 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v 183 (341)
++|+..|+ .|.-|++++..|+.+|.+.+++.+.... . ..+...++.+|++-++.
T Consensus 148 ~~vlI~g~-~g~vg~~~~~~a~~~g~~v~~~~~~~~~-~------~~~~~~~~~~g~~~~~~ 201 (341)
T cd08290 148 DWVIQNGA-NSAVGQAVIQLAKLLGIKTINVVRDRPD-L------EELKERLKALGADHVLT 201 (341)
T ss_pred CEEEEccc-hhHHHHHHHHHHHHcCCeEEEEEcCCCc-c------hhHHHHHHhcCCCEEEe
Confidence 56666654 5789999999999999997777653210 0 12355667789865443
No 490
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=20.43 E-value=1.2e+02 Score=29.34 Aligned_cols=31 Identities=29% Similarity=0.304 Sum_probs=24.3
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcC
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 155 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~ 155 (341)
+.|| .|| |-.|.++|.+.++.|++++|+=..
T Consensus 9 dViI-VGa--G~~Gl~~A~~L~~~G~~v~liE~~ 39 (388)
T PRK07494 9 DIAV-IGG--GPAGLAAAIALARAGASVALVAPE 39 (388)
T ss_pred CEEE-ECc--CHHHHHHHHHHhcCCCeEEEEeCC
Confidence 4444 565 789999999999999998887443
No 491
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=20.41 E-value=8.3e+02 Score=24.08 Aligned_cols=18 Identities=17% Similarity=0.178 Sum_probs=14.5
Q ss_pred hhHHHHHhCCCEEEEECC
Q 019410 168 GNLLVERLVGAHIELISK 185 (341)
Q Consensus 168 gn~~~~~~~GAeV~~v~~ 185 (341)
.-...++.+|++++.++-
T Consensus 177 ~~~~~~~~~g~~~~~v~~ 194 (431)
T PRK15481 177 SSINMLRYAGFSASPVSV 194 (431)
T ss_pred HHHHHHHHcCCeEEeecc
Confidence 357778899999999874
No 492
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=20.37 E-value=3.8e+02 Score=20.11 Aligned_cols=45 Identities=16% Similarity=0.077 Sum_probs=29.3
Q ss_pred eCCCcchHHHHHHHHHHHcC---CeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEE
Q 019410 127 IGGIQSNHCRAAAVAAKYLN---LDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 182 (341)
Q Consensus 127 ~G~s~GNhg~AlA~aa~~~G---l~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~ 182 (341)
.|+ ||.|.+++.-....| .+..++...+. .....+.+.+|.++..
T Consensus 5 IG~--G~mg~al~~~l~~~g~~~~~v~~~~~r~~---------~~~~~~~~~~~~~~~~ 52 (96)
T PF03807_consen 5 IGA--GNMGSALARGLLASGIKPHEVIIVSSRSP---------EKAAELAKEYGVQATA 52 (96)
T ss_dssp EST--SHHHHHHHHHHHHTTS-GGEEEEEEESSH---------HHHHHHHHHCTTEEES
T ss_pred ECC--CHHHHHHHHHHHHCCCCceeEEeeccCcH---------HHHHHHHHhhcccccc
Confidence 454 899999999999999 66665533321 1123445678866543
No 493
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=20.32 E-value=3e+02 Score=29.26 Aligned_cols=61 Identities=13% Similarity=0.088 Sum_probs=38.5
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCC---------CcCCCCC-cchhHHHHHhCCCEEEEEC
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKV---------LVDQDPG-LIGNLLVERLVGAHIELIS 184 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~---------~~~~~~~-~~gn~~~~~~~GAeV~~v~ 184 (341)
+.|+..|| |-.|.+.|+..+++|+++++|=..... ..+.... .......++.+|.++++-.
T Consensus 311 kkVaIIG~--GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~ 381 (639)
T PRK12809 311 EKVAVIGA--GPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNC 381 (639)
T ss_pred CEEEEECc--CHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCC
Confidence 45666776 789999999999999998888543321 0000000 0124567788998876543
No 494
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=20.28 E-value=1.6e+02 Score=26.97 Aligned_cols=25 Identities=4% Similarity=-0.097 Sum_probs=21.7
Q ss_pred CCcchHHHHHHHHHHHcCCeEEEEE
Q 019410 129 GIQSNHCRAAAVAAKYLNLDCYLIL 153 (341)
Q Consensus 129 ~s~GNhg~AlA~aa~~~Gl~~~ivv 153 (341)
.|+|-.|+++|......|.+++++-
T Consensus 22 ~SSGgIG~AIA~~la~~Ga~Vvlv~ 46 (227)
T TIGR02114 22 HSTGHLGKIITETFLSAGHEVTLVT 46 (227)
T ss_pred CcccHHHHHHHHHHHHCCCEEEEEc
Confidence 4567899999999999999998874
No 495
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=20.23 E-value=6e+02 Score=22.37 Aligned_cols=30 Identities=20% Similarity=0.062 Sum_probs=23.2
Q ss_pred EEEeCCCcchHHHHHHHHHHHcCCeEEEEEcC
Q 019410 124 IITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 155 (341)
Q Consensus 124 vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~ 155 (341)
+|| | .+|-.|..+|....+.|.+++++.+.
T Consensus 5 lIt-G-a~g~lG~~l~~~l~~~g~~v~~~~r~ 34 (255)
T TIGR01963 5 LVT-G-AASGIGLAIALALAAAGANVVVNDLG 34 (255)
T ss_pred EEc-C-CcchHHHHHHHHHHHCCCEEEEEeCC
Confidence 444 4 44789999999999999987777654
No 496
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=20.22 E-value=2.2e+02 Score=21.88 Aligned_cols=31 Identities=19% Similarity=0.261 Sum_probs=22.1
Q ss_pred EEEEcCCchhHHHHHHHHHhcCCCCCeEEEEeeCC
Q 019410 249 DIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCD 283 (341)
Q Consensus 249 ~Ivv~vGtGGt~aGl~~~~k~~~~~~rVigVe~~g 283 (341)
.+-+++|+|....-++. ..+..+|+|||...
T Consensus 5 vLDlGcG~G~~~~~l~~----~~~~~~v~gvD~s~ 35 (112)
T PF12847_consen 5 VLDLGCGTGRLSIALAR----LFPGARVVGVDISP 35 (112)
T ss_dssp EEEETTTTSHHHHHHHH----HHTTSEEEEEESSH
T ss_pred EEEEcCcCCHHHHHHHh----cCCCCEEEEEeCCH
Confidence 46778888877655554 23678999999864
No 497
>PRK09242 tropinone reductase; Provisional
Probab=20.20 E-value=6.2e+02 Score=22.54 Aligned_cols=11 Identities=18% Similarity=0.069 Sum_probs=8.0
Q ss_pred CCCeEEEEeeC
Q 019410 272 LKAKVHAFSVC 282 (341)
Q Consensus 272 ~~~rVigVe~~ 282 (341)
..++|..|.+.
T Consensus 181 ~~i~v~~i~Pg 191 (257)
T PRK09242 181 DGIRVNAVAPW 191 (257)
T ss_pred hCeEEEEEEEC
Confidence 46888888764
No 498
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=20.15 E-value=1.7e+02 Score=28.84 Aligned_cols=30 Identities=23% Similarity=0.114 Sum_probs=25.4
Q ss_pred EEEeCCCcchHHHHHHHHHHHcCCeEEEEEcC
Q 019410 124 IITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 155 (341)
Q Consensus 124 vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~ 155 (341)
|...|+ |++|-|||..+++.|-+++++.++
T Consensus 4 I~ViGa--GswGTALA~~la~ng~~V~lw~r~ 33 (329)
T COG0240 4 IAVIGA--GSWGTALAKVLARNGHEVRLWGRD 33 (329)
T ss_pred EEEEcC--ChHHHHHHHHHHhcCCeeEEEecC
Confidence 444565 899999999999999999999874
No 499
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=20.11 E-value=2.4e+02 Score=24.25 Aligned_cols=61 Identities=20% Similarity=0.196 Sum_probs=40.0
Q ss_pred HHHHHHHHHcCC--CeEEEeCCCcchHHHHHHHHHHH-cCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCc
Q 019410 110 EFLMADAVAQGA--DCIITIGGIQSNHCRAAAVAAKY-LNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKE 186 (341)
Q Consensus 110 ~~ll~~A~~~g~--~~vVt~G~s~GNhg~AlA~aa~~-~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~ 186 (341)
...+.++...|. ..|+.|| +|++++++|.+ .|++|-++-+... -...-+..+|+|+..+..
T Consensus 44 a~~va~~V~~g~~~~GIliCG-----tGiG~siaANK~~GIraa~~~d~~~-----------A~~ar~hNnaNVl~lGar 107 (144)
T TIGR00689 44 AKLVADKVVAGEVSLGILICG-----TGIGMSIAANKFKGIRAALCVDEYT-----------AALARQHNDANVLCLGSR 107 (144)
T ss_pred HHHHHHHHHcCCCceEEEEcC-----CcHHHHHHHhcCCCeEEEEECCHHH-----------HHHHHHhcCCcEEEECcc
Confidence 344555555553 4566665 48899998887 8999999864322 122334568999999853
No 500
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=20.10 E-value=2.3e+02 Score=24.63 Aligned_cols=116 Identities=16% Similarity=0.063 Sum_probs=63.8
Q ss_pred CeEEEeCCCcchHHHHHHHHHHHcCCeEEEEEcCCCCCcCCCCCcchhHHHHHhCCCEEEEECCccccccCcHHHHHHHH
Q 019410 122 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILK 201 (341)
Q Consensus 122 ~~vVt~G~s~GNhg~AlA~aa~~~Gl~~~ivvp~~~~~~~~~~~~~gn~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~a 201 (341)
++|...|- |+-|+++|..++.+|++++++=|...+ .......|.+.. .. +++.
T Consensus 37 ~tvgIiG~--G~IG~~vA~~l~~fG~~V~~~d~~~~~-----------~~~~~~~~~~~~-----~l---------~ell 89 (178)
T PF02826_consen 37 KTVGIIGY--GRIGRAVARRLKAFGMRVIGYDRSPKP-----------EEGADEFGVEYV-----SL---------DELL 89 (178)
T ss_dssp SEEEEEST--SHHHHHHHHHHHHTT-EEEEEESSCHH-----------HHHHHHTTEEES-----SH---------HHHH
T ss_pred CEEEEEEE--cCCcCeEeeeeecCCceeEEecccCCh-----------hhhcccccceee-----eh---------hhhc
Confidence 45555563 899999999999999998888764321 112334443110 11 1222
Q ss_pred HHHHHhCCCcE--EeCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEcCCchhHH--HHHHHHHhcCCCCCeEE
Q 019410 202 EKLLKEGRRPY--VIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTI--AGLSLGSWLGTLKAKVH 277 (341)
Q Consensus 202 ~~l~~~g~~~~--~ip~g~~n~~~~~G~~t~a~EI~~Ql~~~~~g~~~D~Ivv~vGtGGt~--aGl~~~~k~~~~~~rVi 277 (341)
++. ... .+|... .... -+..|..++++ .+.+++-+|-|+.+ ..+..+++. .++.-.
T Consensus 90 ---~~a--Div~~~~plt~-~T~~-----li~~~~l~~mk-------~ga~lvN~aRG~~vde~aL~~aL~~--g~i~ga 149 (178)
T PF02826_consen 90 ---AQA--DIVSLHLPLTP-ETRG-----LINAEFLAKMK-------PGAVLVNVARGELVDEDALLDALES--GKIAGA 149 (178)
T ss_dssp ---HH---SEEEE-SSSST-TTTT-----SBSHHHHHTST-------TTEEEEESSSGGGB-HHHHHHHHHT--TSEEEE
T ss_pred ---chh--hhhhhhhcccc-ccce-----eeeeeeeeccc-------cceEEEeccchhhhhhhHHHHHHhh--ccCceE
Confidence 221 222 233221 1122 23456667764 68899999999985 345555554 455556
Q ss_pred EEeeCCC
Q 019410 278 AFSVCDD 284 (341)
Q Consensus 278 gVe~~g~ 284 (341)
+.++-..
T Consensus 150 ~lDV~~~ 156 (178)
T PF02826_consen 150 ALDVFEP 156 (178)
T ss_dssp EESS-SS
T ss_pred EEECCCC
Confidence 6665544
Done!