Query 019411
Match_columns 341
No_of_seqs 117 out of 290
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 09:15:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019411.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019411hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02524 S-adenosylmethionine 100.0 7E-126 2E-130 924.3 33.3 328 9-338 2-354 (355)
2 TIGR00535 SAM_DCase S-adenosyl 100.0 6E-119 1E-123 870.2 31.2 282 15-301 1-292 (334)
3 PF01536 SAM_decarbox: Adenosy 100.0 3E-118 7E-123 868.0 25.0 287 11-301 1-288 (331)
4 KOG0788 S-adenosylmethionine d 100.0 8E-117 2E-121 841.2 23.2 299 10-312 2-303 (334)
5 TIGR03330 SAM_DCase_Bsu S-aden 96.0 0.028 6E-07 47.6 7.2 81 211-298 30-110 (112)
6 PRK04025 S-adenosylmethionine 95.5 0.053 1.2E-06 47.9 7.2 83 211-300 31-113 (139)
7 PF02675 AdoMet_dc: S-adenosyl 95.2 0.018 3.9E-07 47.8 3.3 80 211-298 25-104 (106)
8 PRK01706 S-adenosylmethionine 95.0 0.075 1.6E-06 46.0 6.6 82 212-300 34-115 (123)
9 PRK02770 S-adenosylmethionine 94.6 0.092 2E-06 46.4 6.2 82 211-299 44-125 (139)
10 PRK03124 S-adenosylmethionine 94.3 0.12 2.6E-06 44.9 6.3 83 211-300 31-113 (127)
11 PRK01236 S-adenosylmethionine 93.4 0.26 5.7E-06 43.1 6.7 82 211-299 32-113 (131)
12 PRK00458 S-adenosylmethionine 92.0 0.72 1.6E-05 40.1 7.4 82 211-299 42-124 (127)
13 COG1586 SpeD S-adenosylmethion 90.0 0.74 1.6E-05 40.8 5.6 69 227-299 53-122 (136)
14 PRK05462 S-adenosylmethionine 78.8 6.5 0.00014 38.4 6.7 71 228-300 68-171 (266)
15 TIGR03331 SAM_DCase_Eco S-aden 67.1 19 0.00042 35.0 6.9 74 228-303 64-170 (259)
16 PRK05462 S-adenosylmethionine 29.2 2.6E+02 0.0057 27.5 7.8 109 46-162 52-207 (266)
17 PF13619 KTSC: KTSC domain 29.1 67 0.0015 23.9 3.1 37 12-54 8-44 (60)
18 PF08149 BING4CT: BING4CT (NUC 27.5 77 0.0017 25.9 3.3 72 222-294 6-78 (80)
19 KOG3349 Predicted glycosyltran 27.1 1.1E+02 0.0024 28.1 4.6 45 84-128 4-53 (170)
20 PF00788 RA: Ras association ( 26.6 2.3E+02 0.0049 21.7 5.8 46 250-299 4-56 (93)
21 cd01768 RA RA (Ras-associating 23.0 3.5E+02 0.0076 20.8 6.3 46 251-300 2-53 (87)
No 1
>PLN02524 S-adenosylmethionine decarboxylase
Probab=100.00 E-value=7.2e-126 Score=924.33 Aligned_cols=328 Identities=72% Similarity=1.179 Sum_probs=303.7
Q ss_pred ccCCCCCCCcceEEEEEecCCCCcCCCCcccccccCHHHHHHHhcccCCeEEeeeecCceeeeeecCceEEEecceEEEe
Q 019411 9 AVSAIGFEGYEKRLEISFFEPSMFVDPEGKGLRRLTKAQLDEILGPAECTIVSSLSNDEVDSYVLSESSLFVYSYKIIIK 88 (341)
Q Consensus 9 ~~s~~~FEG~EKrLEI~F~~~~~~~~~~~~gLR~i~r~~w~~~L~~a~C~IlS~~sn~~~DAYvLSESSLFV~~~kiILK 88 (341)
++++.+|||+||||||||++++.+.++.++|||+|||++|++||+.|+|+|||+++|+++||||||||||||||+|||||
T Consensus 2 ~~~~~~FEG~EKrLEI~F~~~~~~~~~~~~gLR~l~~~~w~~iL~~a~C~IlS~~sn~~~DAYvLSESSLFV~~~kiILK 81 (355)
T PLN02524 2 PVSAIGFEGFEKRLEITFFEPPVFADPNGRGLRALTRSQLDEILRPAECTIVSSLSNDQFDSYVLSESSLFVYPYKIIIK 81 (355)
T ss_pred CCCCCCccccceEEEEEEecCcccCCCCCCccccCCHHHHHHHHHHcCCEEEeecccCCceeeeecceeEEEECCEEEEE
Confidence 56788999999999999998765556778999999999999999999999999999999999999999999999999999
Q ss_pred ccCchhhhcchHHHHHHHHHhCceeeEEEEccccccCCCCCCCCCCChHHHHHHHHHHhcCCCCCceeEEecCCCCCCcE
Q 019411 89 TCGTTKLLLSIPPILKLAETLSLNVRSVRYTRGSFIFPGNQLYPHRNFSEEVAVLDSYFGKLVSGSNAYIIGGSGKPQKW 168 (341)
Q Consensus 89 TCGTTtLL~al~~ll~la~~~~~~v~~v~YSRknf~fP~~Q~~pH~sf~~Ev~~L~~~F~~l~~~G~aY~~G~~~~~~~W 168 (341)
||||||||+|||+||++|+++|++|++|+||||||+||++|++||++|++||++|+++|++|+.+|+||+||+++++|||
T Consensus 82 TCGTT~LL~~i~~ll~la~~~~l~v~~v~YsRknf~fP~~Q~~pH~sf~eEV~~L~~~F~~l~~~G~AY~~G~~~~~~hW 161 (355)
T PLN02524 82 TCGTTKLLLSIPPLLELAARLSLSVRSVKYTRGSFIFPGAQPFPHRSFSEEVSVLDGHFGKLGLGGKAYVMGDPDKGQKW 161 (355)
T ss_pred eCCcccHHHHHHHHHHHHHHcCCceeEEEEecccccCcccCCCcccCHHHHHHHHHHhcccccCCceEEEeCCCCCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999889999999998767999
Q ss_pred EEEecCCCCCC-CCCCceeEEEeecCCCHhhhhccccCCC-CcHHHHHHHhCCcccCCCCcccccCCCCCcccccccCCC
Q 019411 169 HVYSASAEPLI-SSDPVFTIEMCLTGLDREMASVFYKTQS-GSAGAMTVNSGIRKILPDSKICDFEFDPCGYSMNSVEGA 246 (341)
Q Consensus 169 ~lY~~~~~~~~-~~~~D~TlEIlMt~Ld~~~a~~F~~~~~-~~~~~~t~~sGI~~l~P~~~id~~~F~PCGYSmNgi~~~ 246 (341)
|||+++..... ..++|+|+|||||+||+++|++||++++ ++|++||+.+||++|+|++.||||+|+|||||||||.|+
T Consensus 162 ~lY~a~~~~~~~~~~~d~TlEilMt~Ld~~~a~~F~~~~~~~s~~~~t~~sgI~~i~P~~~iddf~F~PCGYSmN~i~g~ 241 (355)
T PLN02524 162 HVYSASAHNSSNSNEPVYTLEMCMTGLDREKASVFFKDSSLSSAEEMTKASGIRKILPESEICDFAFDPCGYSMNGIEGD 241 (355)
T ss_pred EEEeCCCcccccCCCCCeEEEEEccCCCHHHHhhhhhCcccccHHHHHHhhChhhhCCCCeecccccCCCcccccccCCC
Confidence 99999876432 2589999999999999999999999987 899999999999999999999999999999999999999
Q ss_pred ceEEEEeeCCCCCeeEEEeecCCCCCCCCHHHHHHHHhhccCCceEEEEEEEccccchhhhhcccc--------------
Q 019411 247 AISTVHVTPEDGFSYASFETVGYDPNDVNLNQLVERVLACFQPRDFSIAVHAEVAGKMIEQKCLLN-------------- 312 (341)
Q Consensus 247 ~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~li~~VL~~F~P~~f~vtlf~~~~~~~~~~~~~~~-------------- 312 (341)
+|+|||||||++|||||||||++|....++.+||+|||+||+|++|+||+|++.......+...++
T Consensus 242 ~y~TIHVTPE~~~SYaSFEtn~~~~~~~~~~~lv~rVl~~F~P~~fsvt~~~~~~~~~~~~~~~~~~~gY~~~~~~~~~l 321 (355)
T PLN02524 242 AISTIHVTPEDGFSYASFEAMGYDPGDLDLSQLVERVLACFKPKEFSVAVHANVGGEAGSWGCSLDPDGYSCKGRSCQEL 321 (355)
T ss_pred ceEEEEECCCCCCeEEEEEeccCCccccCHHHHHHHHHhhcCCceEEEEEEecCccchhccccccCcCCceecCcEEEec
Confidence 999999999999999999999988888899999999999999999999999987555443333222
Q ss_pred ---------ceecccCCCCCCccccccccchhhhc
Q 019411 313 ---------KFVKTEGNGSPRSTLKCYWKEEEEYE 338 (341)
Q Consensus 313 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (341)
+|.+...|++|||+|+ |++++.++
T Consensus 322 ~~~~~l~y~~f~~~~~~~~~~~~~~--~~~~~~~~ 354 (355)
T PLN02524 322 PGGGSVVYQTFTATGGCGSPRSTLK--WSENESCE 354 (355)
T ss_pred CCCcEEEEEEEEecCCCCCchhhhc--cchhcccc
Confidence 7877778999999999 99776554
No 2
>TIGR00535 SAM_DCase S-adenosylmethionine decarboxylase proenzyme, eukaryotic form. This protein is a pyruvoyl-dependent enzyme. The proenzyme is cleaved at a Ser residue that becomes a pyruvoyl group active site.
Probab=100.00 E-value=5.7e-119 Score=870.16 Aligned_cols=282 Identities=59% Similarity=0.931 Sum_probs=266.0
Q ss_pred CCCcceEEEEEecCCCCcCCCCcccccccCHHHHHHHhcccCCeEEeeeecCceeeeeecCceEEEecceEEEeccCchh
Q 019411 15 FEGYEKRLEISFFEPSMFVDPEGKGLRRLTKAQLDEILGPAECTIVSSLSNDEVDSYVLSESSLFVYSYKIIIKTCGTTK 94 (341)
Q Consensus 15 FEG~EKrLEI~F~~~~~~~~~~~~gLR~i~r~~w~~~L~~a~C~IlS~~sn~~~DAYvLSESSLFV~~~kiILKTCGTTt 94 (341)
|||+||||||||.+++.. .+.++|||+|||++|++||++|+|+|||+++|+++||||||||||||||||||||||||||
T Consensus 1 FEG~EKrLEI~F~~~~~~-~~~~~gLR~l~~~~w~~iL~~a~C~IlS~~sn~~~DAYvLSESSLFV~~~kiILKTCGTTt 79 (334)
T TIGR00535 1 FEGPEKLLEIWFFEHKKF-IDEGKGLRAIGRAQIDEILDLARCTILSSKKNKSLDSYVLSESSLFIYDHKIIIKTCGTTK 79 (334)
T ss_pred CCCcceEEEEEEecCCcC-CCCCCChhhCCHHHHHHHHHhhCcEEeeeccCCceeEeEeccceeeEECCEEEEEeCCCch
Confidence 999999999999976533 2677999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchHHHHHHHHHh-Cc-eeeEEEEccccccCCCCCCCCCCChHHHHHHHHHHhcCCCCCceeEEecCCCCCCcEEEEe
Q 019411 95 LLLSIPPILKLAETL-SL-NVRSVRYTRGSFIFPGNQLYPHRNFSEEVAVLDSYFGKLVSGSNAYIIGGSGKPQKWHVYS 172 (341)
Q Consensus 95 LL~al~~ll~la~~~-~~-~v~~v~YSRknf~fP~~Q~~pH~sf~~Ev~~L~~~F~~l~~~G~aY~~G~~~~~~~W~lY~ 172 (341)
||+|||+||++|+++ |+ .|++|+||||||+||++|++||++|+|||++|+++|+ +|+||+||++++++|||||+
T Consensus 80 LL~~l~~ll~~a~~~~g~~~v~~v~YsRksf~fP~~Q~~pH~sf~eEV~~L~~~F~----~g~AY~~G~~~~~~~WhlY~ 155 (334)
T TIGR00535 80 LLFALPKILQLAEQLSSWYKVFSVFYSRGCFLFPCAQPAIHRNFSEEVAYLNKFFG----NGKAYVVGDPAKPQKWHLYV 155 (334)
T ss_pred HHHHHHHHHHHHHHhcCcCceeEEEEecccccCcccCCCcCCCHHHHHHHHHHhcC----CCceEEeCCCCCCCceEEEe
Confidence 999999999999988 54 6899999999999999999999999999999999998 69999999999889999999
Q ss_pred cCCCCCC--CCCCceeEEEeecCCCHhhhhccccCCCCc----HHHHHHHhCCcccCCC-CcccccCCCCCcccccccCC
Q 019411 173 ASAEPLI--SSDPVFTIEMCLTGLDREMASVFYKTQSGS----AGAMTVNSGIRKILPD-SKICDFEFDPCGYSMNSVEG 245 (341)
Q Consensus 173 ~~~~~~~--~~~~D~TlEIlMt~Ld~~~a~~F~~~~~~~----~~~~t~~sGI~~l~P~-~~id~~~F~PCGYSmNgi~~ 245 (341)
+..+... ..++|+|+|||||+||+++|++||+++.++ |.+||+.+||++|+|+ +.||||+|+|||||||||.|
T Consensus 156 ~~~~~~~~~~~~~d~TlEilMt~Ld~~~a~~F~~~~~~~~h~~~~~~t~~sgI~~i~P~~~~iddf~F~PCGYSmNgi~~ 235 (334)
T TIGR00535 156 AETERETPKIEDPDETLEMLMTGLDKEKASKFFKGPAASTHNLGYQMTKNSGIDKIIPNSAQICDFDFEPCGYSMNAILG 235 (334)
T ss_pred CCCCccccCCCCCceEeeeecccCCHHHHHhheeCcCCCccchHHHHHHHhChHhhcCCcceeecccccCCcCccccccC
Confidence 8765422 346899999999999999999999999888 9999999999999999 99999999999999999998
Q ss_pred -CceEEEEeeCCCCCeeEEEeecCCCCCCCCHHHHHHHHhhccCCceEEEEEEEccc
Q 019411 246 -AAISTVHVTPEDGFSYASFETVGYDPNDVNLNQLVERVLACFQPRDFSIAVHAEVA 301 (341)
Q Consensus 246 -~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~li~~VL~~F~P~~f~vtlf~~~~ 301 (341)
++|+|||||||++|||||||||+++....++.+||+|||++|+|++|+||+|++.+
T Consensus 236 ~~~Y~TIHITPE~~~SYaSFEtn~~~~~~~~~~~li~~vl~~F~P~~f~vt~f~~~~ 292 (334)
T TIGR00535 236 EKAYSTIHVTPEKGFSYASFESNGIDQGKQDYLDLVLRVLNCFQPSEFSMTVFAKNY 292 (334)
T ss_pred CCcEEEEEEcCCCCceEEEEeeccCCcccccHHHHHHHHHHhcCCceEEEEEEecCc
Confidence 79999999999999999999998887888999999999999999999999999865
No 3
>PF01536 SAM_decarbox: Adenosylmethionine decarboxylase; InterPro: IPR001985 S-adenosylmethionine decarboxylase (AdoMetDC) [] catalyzes the removal of the carboxylate group of S-adenosylmethionine to form S-adenosyl-5'-3-methylpropylamine which then acts as the n-propylamine group donor in the synthesis of the polyamines spermidine and spermine from putrescine. The catalytic mechanism of AdoMetDC involves a covalently-bound pyruvoyl group. This group is post-translationally generated by a self-catalyzed intramolecular proteolytic cleavage reaction between a glutamate and a serine. This cleavage generates two chains, beta (N-terminal) and alpha (C-terminal). The N-terminal serine residue of the alpha chain is then converted by nonhydrolytic serinolysis into a pyruvyol group.; GO: 0004014 adenosylmethionine decarboxylase activity, 0006597 spermine biosynthetic process, 0008295 spermidine biosynthetic process; PDB: 3EP7_A 3EPA_B 3DZ5_A 3DZ2_B 3EPB_B 3DZ7_A 3EP6_A 3EP4_A 1JEN_A 3H0V_B ....
Probab=100.00 E-value=3.3e-118 Score=868.01 Aligned_cols=287 Identities=48% Similarity=0.802 Sum_probs=237.2
Q ss_pred CCCCCCCcceEEEEEecCCCCcCCCCcccccccCHHHHHHHhcccCCeEEeeeecCceeeeeecCceEEEecceEEEecc
Q 019411 11 SAIGFEGYEKRLEISFFEPSMFVDPEGKGLRRLTKAQLDEILGPAECTIVSSLSNDEVDSYVLSESSLFVYSYKIIIKTC 90 (341)
Q Consensus 11 s~~~FEG~EKrLEI~F~~~~~~~~~~~~gLR~i~r~~w~~~L~~a~C~IlS~~sn~~~DAYvLSESSLFV~~~kiILKTC 90 (341)
++++|||+||||||||.++.....+++.|||+|||++|++||++|+|+|||+++|+++||||||||||||||+|||||||
T Consensus 1 s~~~FEG~EK~LEi~F~~~~~~~~~~~~~LR~i~~~~w~~~L~~a~C~Ils~~sn~~~dAYvLSESSLFV~~~kiilKTC 80 (331)
T PF01536_consen 1 STDFFEGPEKRLEIWFSPPSVFSEPSARGLRSIPREFWDEMLDLAGCEILSEISNEHMDAYVLSESSLFVYPHKIILKTC 80 (331)
T ss_dssp -------SEEEEEEEEE----------S-GGGS-HHHHHHHHHHCT-EEEEEEE-SSEEEEEEETEEEEEETTEEEEEEE
T ss_pred CCCCccccceEEEEEEecCCcCCCCCccccccCCHHHHHHHHHhcCCEEEEEEccCceeEEEccCceEEEECCEEEEEEc
Confidence 46899999999999999865445567899999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhcchHHHHHHHHHhCceeeEEEEccccccCCCCCCCCCCChHHHHHHHHHHhcCCCCCceeEEecCCCCCCcEEE
Q 019411 91 GTTKLLLSIPPILKLAETLSLNVRSVRYTRGSFIFPGNQLYPHRNFSEEVAVLDSYFGKLVSGSNAYIIGGSGKPQKWHV 170 (341)
Q Consensus 91 GTTtLL~al~~ll~la~~~~~~v~~v~YSRknf~fP~~Q~~pH~sf~~Ev~~L~~~F~~l~~~G~aY~~G~~~~~~~W~l 170 (341)
||||||+|||+||++|++++.+|+||+||||||+||++|++||++|++||++|+++|+ +|+||++|++|++|||||
T Consensus 81 GtT~Ll~~l~~ll~la~~~~~~v~~v~YsRknf~~P~~Q~~ph~sf~~Ev~~L~~~F~----~G~aY~~G~~~~d~~wyl 156 (331)
T PF01536_consen 81 GTTTLLKALPPLLELAKELGDEVEWVFYSRKNFMFPELQPSPHRSFEEEVAYLDSFFP----SGKAYVMGPLDSDHHWYL 156 (331)
T ss_dssp TTS-GGGGHHHHHHHHHHCC-EEEEEEEEEE--SSGGGS-TTSSSHHHHHHHHHCCHT----SEEEEEECSTTSS-EEEE
T ss_pred cchhHHHHHHHHHHHHHHhccceeEEEEecccCCCcccCCCccCCHHHHHHHHHHHCC----CCcEEEeCCCCCCceEEE
Confidence 9999999999999999999999999999999999999999999999999999999998 799999999999779999
Q ss_pred EecCCCCCCCCCCceeEEEeecCCCHhhhhccccCCCCcHHHHHHHhCCcccCCCCccc-ccCCCCCcccccccCCCceE
Q 019411 171 YSASAEPLISSDPVFTIEMCLTGLDREMASVFYKTQSGSAGAMTVNSGIRKILPDSKIC-DFEFDPCGYSMNSVEGAAIS 249 (341)
Q Consensus 171 Y~~~~~~~~~~~~D~TlEIlMt~Ld~~~a~~F~~~~~~~~~~~t~~sGI~~l~P~~~id-~~~F~PCGYSmNgi~~~~Y~ 249 (341)
|+++.+....+++|+|||||||+|||++|++||+++.++|++||+++||++|+|++.|| ||+|+||||||||+.|+.|+
T Consensus 157 y~~~~~~~~~~~~D~TLEILMt~Ld~~~~~~F~~~~~~~~~~~t~~sgi~~l~p~~~i~~~f~F~PCGYS~N~~~~~~Y~ 236 (331)
T PF01536_consen 157 YTADTPESSSSEPDQTLEILMTDLDPEVASQFYRSESQSGEEITKASGIDDLFPGFEIDDDFLFEPCGYSMNGIDGDRYY 236 (331)
T ss_dssp EEEESSS-S-SS--EEEEEEEECE-HHHHHCCC-BTTB-HHHHHHHTTGGGCSTTSEEE-EEE-SSC-EEEEEECTTEEE
T ss_pred EecCccccccCCCccchhhhhccCCHHHHHHHhcCCCccHHHHHHhhhhhcccCCcccccccccCCccccccCCCCCeEE
Confidence 99987654456899999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred EEEeeCCCCCeeEEEeecCCCCCCCCHHHHHHHHhhccCCceEEEEEEEccc
Q 019411 250 TVHVTPEDGFSYASFETVGYDPNDVNLNQLVERVLACFQPRDFSIAVHAEVA 301 (341)
Q Consensus 250 TIHVTPE~~~SYaSFETn~~~~~~~~~~~li~~VL~~F~P~~f~vtlf~~~~ 301 (341)
|||||||++|||||||||+++....++.+||+|||++|||++|+||+|+...
T Consensus 237 TIHVTPE~~~SYaSFEtn~~~~~~~~~~~li~~vl~~F~P~~f~~t~f~~~~ 288 (331)
T PF01536_consen 237 TIHVTPEEGFSYASFETNVYDFSQESYDDLIRKVLNIFKPGKFSVTLFASSN 288 (331)
T ss_dssp EEEEE--TTS-EEEEEEES--TTTS-CHHHHHHHHHHH-ECEEEEEEEECTS
T ss_pred EEEECCCCCceEEEEEeccCCcCcCCHHHHHHHHHheeCCcEEEEEEEecCC
Confidence 9999999999999999998778888999999999999999999999998533
No 4
>KOG0788 consensus S-adenosylmethionine decarboxylase [Signal transduction mechanisms]
Probab=100.00 E-value=7.7e-117 Score=841.24 Aligned_cols=299 Identities=56% Similarity=0.909 Sum_probs=282.3
Q ss_pred cCCCCCCCcceEEEEEecCCCCcCCCCcccccccCHHHHHHHhcccCCeEEeeeecCceeeeeecCceEEEecceEEEec
Q 019411 10 VSAIGFEGYEKRLEISFFEPSMFVDPEGKGLRRLTKAQLDEILGPAECTIVSSLSNDEVDSYVLSESSLFVYSYKIIIKT 89 (341)
Q Consensus 10 ~s~~~FEG~EKrLEI~F~~~~~~~~~~~~gLR~i~r~~w~~~L~~a~C~IlS~~sn~~~DAYvLSESSLFV~~~kiILKT 89 (341)
+++.+|||+||||||||.++..+.+.+++|||+|+|++||+||+.|+|+|||.++|+.+||||||||||||||+||||||
T Consensus 2 ~~a~~FEG~EKlLEvwF~~~~~~~~~~~~~LR~i~rs~~DeiL~~v~C~IvS~~~n~~~dayvLSESSlFV~~~kiIlKT 81 (334)
T KOG0788|consen 2 VSATGFEGPEKLLEVWFFEPKKFSDKGGKGLRAISKSQWDEILKEVQCTIVSSLKNDEIDAYVLSESSLFVFKRKIILKT 81 (334)
T ss_pred CcccccccchheEEEEEccCccccccCCccccccChhHHHHHhhhhceeEEeecccchhhhheecccceeEeeeEEEEEe
Confidence 45679999999999999988776677889999999999999999999999999999999999999999999999999999
Q ss_pred cCchhhhcchHHHHHHHHHhC-ceeeEEEEccccccCCCCCCCCCCChHHHHHHHHHHhcCCCCCceeEEecCCCCCCcE
Q 019411 90 CGTTKLLLSIPPILKLAETLS-LNVRSVRYTRGSFIFPGNQLYPHRNFSEEVAVLDSYFGKLVSGSNAYIIGGSGKPQKW 168 (341)
Q Consensus 90 CGTTtLL~al~~ll~la~~~~-~~v~~v~YSRknf~fP~~Q~~pH~sf~~Ev~~L~~~F~~l~~~G~aY~~G~~~~~~~W 168 (341)
||||+||+|||+||+||+++| ..|.+++||||||++|..|++||++|++||+||+++|| +|+|||||+.++.+||
T Consensus 82 CGTT~lL~sL~pLlkLA~~~~~~~v~~v~YSRknFl~P~~Q~~pH~sf~eEV~~L~~~F~----~g~ay~mG~~~~s~~W 157 (334)
T KOG0788|consen 82 CGTTLLLKALVPLLKLAGELSFDSVQSVFYSRKNFLFPGAQPYPHTSFDEEVEYLDKFFP----NGKAYCMGLNMNSKCW 157 (334)
T ss_pred ccchhHHHHHHHHHHHHHHhcccchHhheeccccccCcccCCCCCcCHHHHHHHHHHhcC----CCceEEecCCCCCCce
Confidence 999999999999999999999 67999999999999999999999999999999999998 7999999954556999
Q ss_pred EEEecCCCCC--CCCCCceeEEEeecCCCHhhhhccccCCCCcHHHHHHHhCCcccCCCCcccccCCCCCcccccccCCC
Q 019411 169 HVYSASAEPL--ISSDPVFTIEMCLTGLDREMASVFYKTQSGSAGAMTVNSGIRKILPDSKICDFEFDPCGYSMNSVEGA 246 (341)
Q Consensus 169 ~lY~~~~~~~--~~~~~D~TlEIlMt~Ld~~~a~~F~~~~~~~~~~~t~~sGI~~l~P~~~id~~~F~PCGYSmNgi~~~ 246 (341)
|||++..... ...+||+|||||||+|||++|.+||+++.++|.+||+.|||++|+|+++||||+|+||||||||+.++
T Consensus 158 ~lys~~~~~e~~~~~~~d~TlEvlMt~LD~e~a~~Fyk~~~~~a~~mT~~SGI~~I~p~s~iddf~F~PCGYSmN~~~~d 237 (334)
T KOG0788|consen 158 HLYSASADDESNVIDEPDYTLEVCMTELDPEKASVFYKNNAVSAKEMTDESGIDDILPGSVIDDFAFEPCGYSMNGIDGD 237 (334)
T ss_pred EEEeccccccccccCCCceeHHHHHhhhChhhhheeecccccccccchhhcchhhcCCcceeeccccccccccccCcCCc
Confidence 9999987643 34789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeeCCCCCeeEEEeecCCCCCCCCHHHHHHHHhhccCCceEEEEEEEccccchhhhhcccc
Q 019411 247 AISTVHVTPEDGFSYASFETVGYDPNDVNLNQLVERVLACFQPRDFSIAVHAEVAGKMIEQKCLLN 312 (341)
Q Consensus 247 ~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~li~~VL~~F~P~~f~vtlf~~~~~~~~~~~~~~~ 312 (341)
+|+|||||||++|||||||||++|+...++.++|+|||+||+|++|+||+|++.+++..+.....+
T Consensus 238 ~y~TIHVTPE~~fSYaSFEt~~~~~~~~~~~~li~kvl~~F~P~kfs~t~f~n~~~~~~~~~~~~~ 303 (334)
T KOG0788|consen 238 AYSTIHVTPEDGFSYASFETVGYDQGLLDLSELISKVLNCFKPNKFSVTVFANYGSESYKHLLSKD 303 (334)
T ss_pred eEEEEEeccccCceEEEEEeeccccccccHHHHHHHHHHhcCcCcEEEEEEeeccchhhhhhhhhh
Confidence 999999999999999999999999999999999999999999999999999998888865554444
No 5
>TIGR03330 SAM_DCase_Bsu S-adenosylmethionine decarboxylase proenzyme, Bacillus form. Members of this protein family are the single chain precursor of the two chains of the mature S-adenosylmethionine decarboxylase as found in Methanocaldococcus jannaschii, Bacillus subtilis, and a wide range of other species. It differs substantially in architecture from the form as found in Escherichia coli, and lacks any extended homology to the eukaryotic form (TIGR00535).
Probab=95.99 E-value=0.028 Score=47.64 Aligned_cols=81 Identities=16% Similarity=0.244 Sum_probs=60.9
Q ss_pred HHHHHHhCCcccCCCCcccccCCCCCcccccccCCCceEEEEeeCCCCCeeEEEeecCCCCCCCCHHHHHHHHhhccCCc
Q 019411 211 GAMTVNSGIRKILPDSKICDFEFDPCGYSMNSVEGAAISTVHVTPEDGFSYASFETVGYDPNDVNLNQLVERVLACFQPR 290 (341)
Q Consensus 211 ~~~t~~sGI~~l~P~~~id~~~F~PCGYSmNgi~~~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~li~~VL~~F~P~ 290 (341)
.+..+..|..-+ .+.-+.|+|.|+|.=.|..+...+||.=||.+ ||.+..=-++ ...+....++-+.+.|+|+
T Consensus 30 ~~a~~~~g~ti~----~~~~h~F~p~Gvt~v~llaESHisiHTwPE~g--yaavDiftCg-~~~~p~~a~~~l~~~f~~~ 102 (112)
T TIGR03330 30 LEAAKVAGATLV----ASHFHKFSPGGVSGVVLLAESHISIHTWPEYG--YAAVDVFTCG-DHSDPEKAFEYLVEALKPK 102 (112)
T ss_pred HHHHHHcCCEEE----EEEEEEcCCCcEEEEEEecccEEEEEeccCCC--cEEEEEEecC-CCCCHHHHHHHHHHHhCCC
Confidence 345555554422 24678999999999999999999999999976 5665542122 2247889999999999999
Q ss_pred eEEEEEEE
Q 019411 291 DFSIAVHA 298 (341)
Q Consensus 291 ~f~vtlf~ 298 (341)
+..++...
T Consensus 103 ~~~~~~~~ 110 (112)
T TIGR03330 103 RVEVRELD 110 (112)
T ss_pred eEEEEEEe
Confidence 99988654
No 6
>PRK04025 S-adenosylmethionine decarboxylase proenzyme; Validated
Probab=95.47 E-value=0.053 Score=47.86 Aligned_cols=83 Identities=18% Similarity=0.255 Sum_probs=63.8
Q ss_pred HHHHHHhCCcccCCCCcccccCCCCCcccccccCCCceEEEEeeCCCCCeeEEEeecCCCCCCCCHHHHHHHHhhccCCc
Q 019411 211 GAMTVNSGIRKILPDSKICDFEFDPCGYSMNSVEGAAISTVHVTPEDGFSYASFETVGYDPNDVNLNQLVERVLACFQPR 290 (341)
Q Consensus 211 ~~~t~~sGI~~l~P~~~id~~~F~PCGYSmNgi~~~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~li~~VL~~F~P~ 290 (341)
.+..+..|..-+ .+..+.|+|=|+|.-+|..+...+||.=||.+ ||.+..=-++ ...+....++.+.+.|+|+
T Consensus 31 ~~Aa~~~gatil----~~~~h~F~P~GvTgv~lLaESHisIHTwPE~g--yaavDIftCg-~~~~p~~a~~~L~~~f~~~ 103 (139)
T PRK04025 31 LEAAKRGNMEVK----ASYFFKFSPTGVSGVVIVAESHISVHTWPEKG--YAALDVYTCG-EKADPEKAVDYILEQFKAK 103 (139)
T ss_pred HHHHHHcCCeEE----EEEEEEcCCCcEEEEEEeccceEEEEecccCC--eEEEEEEecC-CCCCHHHHHHHHHHHhCCC
Confidence 355555664432 35779999999999999999999999999975 5665552122 2247889999999999999
Q ss_pred eEEEEEEEcc
Q 019411 291 DFSIAVHAEV 300 (341)
Q Consensus 291 ~f~vtlf~~~ 300 (341)
+..++.+...
T Consensus 104 ~~~~~~l~RG 113 (139)
T PRK04025 104 YAHVSEIKRG 113 (139)
T ss_pred eEEEEEEeCC
Confidence 9999987764
No 7
>PF02675 AdoMet_dc: S-adenosylmethionine decarboxylase ; InterPro: IPR003826 Polyamines such as spermidine and spermine are essential for cellular growth under most conditions, being implicated in a large number of cellular processes including DNA, RNA and protein synthesis. S-adenosylmethionine decarboxylase (AdoMetDC) plays an essential regulatory role in the polyamine biosynthetic pathway by generating the n-propylamine residue required for the synthesis of spermidine and spermine from putrescein [, ]. Unlike many amino acid decarboxylases AdoMetDC uses a covalently bound pyruvate residue as a cofactor rather than the more common pyridoxal 5'-phosphate. These proteins can be divided into two main groups which show little sequence similarity either to each other, or to other pyruvoyl-dependent amino acid decarboxylases: class I enzymes found in bacteria and archaea, and class II enzymes found in eukaryotes. In both groups the active enzyme is generated by the post-translational autocatalytic cleavage of a precursor protein. This cleavage generates the pyruvate precursor from an internal serine residue and results in the formation of two non-identical subunits termed alpha and beta which form the active enzyme. Members of this family are related to the amino terminus of Escherichia coli S-adenosylmethionine decarboxylase.; GO: 0004014 adenosylmethionine decarboxylase activity, 0008295 spermidine biosynthetic process; PDB: 1VR7_A 3IWC_D 3IWD_D 3IWB_C 1TMI_A 1TLU_A 2III_A.
Probab=95.23 E-value=0.018 Score=47.82 Aligned_cols=80 Identities=18% Similarity=0.324 Sum_probs=57.9
Q ss_pred HHHHHHhCCcccCCCCcccccCCCCCcccccccCCCceEEEEeeCCCCCeeEEEeecCCCCCCCCHHHHHHHHhhccCCc
Q 019411 211 GAMTVNSGIRKILPDSKICDFEFDPCGYSMNSVEGAAISTVHVTPEDGFSYASFETVGYDPNDVNLNQLVERVLACFQPR 290 (341)
Q Consensus 211 ~~~t~~sGI~~l~P~~~id~~~F~PCGYSmNgi~~~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~li~~VL~~F~P~ 290 (341)
.+..+..|+..+ .+.-+.|+|=|+|.=++..+...+||.=||.++-++-.=|. + ..+...+++.+.+.|+|+
T Consensus 25 ~~a~~~~g~~~~----~~~~~~f~p~GvT~~~ll~ESHisiHTwPE~~~~avDiftC--~--~~~p~~a~~~l~~~f~~~ 96 (106)
T PF02675_consen 25 RDAAKAAGLTVL----SISFHKFEPQGVTGVALLAESHISIHTWPEHGYAAVDIFTC--G--EFDPEKAIEYLKKAFKPD 96 (106)
T ss_dssp HHHHHHCT-EEE----EEEEEE-SSS-EEEEEEETTEEEEEEEEGGGTEEEEEEEEE--S--THHHHHHHHHHHHHHT-S
T ss_pred HHHHHHcCCEEE----EEEEEEcCCCcEEEEEEhhccEEEEEeCCCcCeEEEEEEEc--C--CCCHHHHHHHHHHHhCCC
Confidence 345555566443 24678999999999999999999999999999544443343 2 247889999999999999
Q ss_pred eEEEEEEE
Q 019411 291 DFSIAVHA 298 (341)
Q Consensus 291 ~f~vtlf~ 298 (341)
++.++...
T Consensus 97 ~~~~~~i~ 104 (106)
T PF02675_consen 97 KVKITEIK 104 (106)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEe
Confidence 99988653
No 8
>PRK01706 S-adenosylmethionine decarboxylase proenzyme; Validated
Probab=95.03 E-value=0.075 Score=45.96 Aligned_cols=82 Identities=17% Similarity=0.311 Sum_probs=62.5
Q ss_pred HHHHHhCCcccCCCCcccccCCCCCcccccccCCCceEEEEeeCCCCCeeEEEeecCCCCCCCCHHHHHHHHhhccCCce
Q 019411 212 AMTVNSGIRKILPDSKICDFEFDPCGYSMNSVEGAAISTVHVTPEDGFSYASFETVGYDPNDVNLNQLVERVLACFQPRD 291 (341)
Q Consensus 212 ~~t~~sGI~~l~P~~~id~~~F~PCGYSmNgi~~~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~li~~VL~~F~P~~ 291 (341)
+..+..|..-+ .+..+.|+|=|.|.=+|..+...+||.=||.+ ||.+..=-++ ...+....++.+.+.|+|++
T Consensus 34 ~aa~~~g~tiv----~~~~h~F~p~GvTgv~llaESHisIHTwPE~g--yaavDiftCg-~~~~p~~a~~~L~~~l~~~~ 106 (123)
T PRK01706 34 EAADLSGAHVL----NVSTKEFDPQGVTVLVLLSESHLSIHTYPEKN--FAAIDCYTCG-TTVEPQIAIDYIVSILKPNE 106 (123)
T ss_pred HHHHHcCCeEE----EEEEEEcCCCcEEEEEEeeccEEEEEeCccCC--eEEEEEEecC-CCCCHHHHHHHHHHHhCCCe
Confidence 44444554322 34679999999999999999999999999976 6777652122 22478999999999999999
Q ss_pred EEEEEEEcc
Q 019411 292 FSIAVHAEV 300 (341)
Q Consensus 292 f~vtlf~~~ 300 (341)
..++.+...
T Consensus 107 ~~~~~~~RG 115 (123)
T PRK01706 107 MHIKRLIRG 115 (123)
T ss_pred EEEEEEecC
Confidence 999876653
No 9
>PRK02770 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=94.59 E-value=0.092 Score=46.39 Aligned_cols=82 Identities=13% Similarity=0.276 Sum_probs=63.0
Q ss_pred HHHHHHhCCcccCCCCcccccCCCCCcccccccCCCceEEEEeeCCCCCeeEEEeecCCCCCCCCHHHHHHHHhhccCCc
Q 019411 211 GAMTVNSGIRKILPDSKICDFEFDPCGYSMNSVEGAAISTVHVTPEDGFSYASFETVGYDPNDVNLNQLVERVLACFQPR 290 (341)
Q Consensus 211 ~~~t~~sGI~~l~P~~~id~~~F~PCGYSmNgi~~~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~li~~VL~~F~P~ 290 (341)
.+..+..|..-+ .+..+.|+|=|+|.-+|..+...+||.=||.+ ||.+..=-++ ...+....++.+.+.|+|+
T Consensus 44 ~~Aa~~~gativ----~~~~h~F~P~GvTgv~lLaESHisIHTwPE~g--yaavDiftCg-~~~~p~~a~~~L~~~l~~~ 116 (139)
T PRK02770 44 TEAAKRAGATLL----NLITHRFEPQGVTALALLAESHISIHTWPESG--YAAVDVFTCG-DHTMPEKACQYLIEELMAK 116 (139)
T ss_pred HHHHHHcCCEEE----EEEeEEcCCCeEEEEEEecccEEEEEeCcCCC--cEEEEEEecC-CCCCHHHHHHHHHHHhCCC
Confidence 355556664432 35779999999999999999999999999975 5665552122 2247889999999999999
Q ss_pred eEEEEEEEc
Q 019411 291 DFSIAVHAE 299 (341)
Q Consensus 291 ~f~vtlf~~ 299 (341)
+..++-+..
T Consensus 117 ~~~~~~~~R 125 (139)
T PRK02770 117 RHSLRSIER 125 (139)
T ss_pred eEEEEEEec
Confidence 999987765
No 10
>PRK03124 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=94.34 E-value=0.12 Score=44.87 Aligned_cols=83 Identities=17% Similarity=0.172 Sum_probs=63.1
Q ss_pred HHHHHHhCCcccCCCCcccccCCCCCcccccccCCCceEEEEeeCCCCCeeEEEeecCCCCCCCCHHHHHHHHhhccCCc
Q 019411 211 GAMTVNSGIRKILPDSKICDFEFDPCGYSMNSVEGAAISTVHVTPEDGFSYASFETVGYDPNDVNLNQLVERVLACFQPR 290 (341)
Q Consensus 211 ~~~t~~sGI~~l~P~~~id~~~F~PCGYSmNgi~~~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~li~~VL~~F~P~ 290 (341)
.+..+.+|..-+ .+..+.|+|=|.|.=+|..+...+||.=||.+ ||.+..=.++ ...+....++.+.+.|+|+
T Consensus 31 ~~a~~~~g~til----~~~~h~F~p~GvTgv~llaESHisIHTwPE~g--yaavDiftCg-~~~~p~~a~~~L~~~f~~~ 103 (127)
T PRK03124 31 VDAALEAGAEVR----EVAFHKFSPQGVSGVVVISESHLTIHTWPELG--YAAVDVFTCG-DRVDPWDACNYIAEGLGAK 103 (127)
T ss_pred HHHHHHcCCeEE----EEEeEEcCCCcEEEEEEeeccEEEEEeCccCC--eEEEEEEecC-CCCCHHHHHHHHHHHhCCC
Confidence 345555564322 35779999999999999999999999999975 6776652122 2247889999999999999
Q ss_pred eEEEEEEEcc
Q 019411 291 DFSIAVHAEV 300 (341)
Q Consensus 291 ~f~vtlf~~~ 300 (341)
+..++.+...
T Consensus 104 ~~~~~~~~RG 113 (127)
T PRK03124 104 TREAIELKRG 113 (127)
T ss_pred eEEEEEEecC
Confidence 9998876653
No 11
>PRK01236 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=93.41 E-value=0.26 Score=43.08 Aligned_cols=82 Identities=15% Similarity=0.265 Sum_probs=62.4
Q ss_pred HHHHHHhCCcccCCCCcccccCCCCCcccccccCCCceEEEEeeCCCCCeeEEEeecCCCCCCCCHHHHHHHHhhccCCc
Q 019411 211 GAMTVNSGIRKILPDSKICDFEFDPCGYSMNSVEGAAISTVHVTPEDGFSYASFETVGYDPNDVNLNQLVERVLACFQPR 290 (341)
Q Consensus 211 ~~~t~~sGI~~l~P~~~id~~~F~PCGYSmNgi~~~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~li~~VL~~F~P~ 290 (341)
.+..+.+|..-+ .+..+-|+|=|+|.=+|..+...+||.=||.+ ||.+..=.++ ...+....++-+.+.|+|+
T Consensus 32 ~~aa~~~g~tiv----~~~~h~F~p~GvTgv~lLaESHisIHTwPE~g--yaavDiftCg-~~~~p~~a~~~L~~~f~~~ 104 (131)
T PRK01236 32 EGAVKYAELTKI----SSHYYQFNPHGATGVVLLAESHISIHTWPEYG--LVTLDVYTCG-DPSKADKAFEYIIKKLKPK 104 (131)
T ss_pred HHHHHHCCCEEE----EEEEEEcCCCcEEEEEEeeccEEEEEeCccCC--eEEEEEEecC-CCCCHHHHHHHHHHHhCCC
Confidence 355555664422 34678999999999999999999999999965 6666652122 2246889999999999999
Q ss_pred eEEEEEEEc
Q 019411 291 DFSIAVHAE 299 (341)
Q Consensus 291 ~f~vtlf~~ 299 (341)
+..++.+..
T Consensus 105 ~~~~~~l~R 113 (131)
T PRK01236 105 RVDHKVLER 113 (131)
T ss_pred eEEEEEEec
Confidence 999987765
No 12
>PRK00458 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=91.95 E-value=0.72 Score=40.12 Aligned_cols=82 Identities=12% Similarity=0.258 Sum_probs=61.6
Q ss_pred HHHHHHhCCcccCCCCcccccCCCC-CcccccccCCCceEEEEeeCCCCCeeEEEeecCCCCCCCCHHHHHHHHhhccCC
Q 019411 211 GAMTVNSGIRKILPDSKICDFEFDP-CGYSMNSVEGAAISTVHVTPEDGFSYASFETVGYDPNDVNLNQLVERVLACFQP 289 (341)
Q Consensus 211 ~~~t~~sGI~~l~P~~~id~~~F~P-CGYSmNgi~~~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~li~~VL~~F~P 289 (341)
.+..+..|..-+ .+.-+.|.| =|+|.=+|..+...+||.=||.+ ||.+..=.++ ...+....++.+.+.|+|
T Consensus 42 ~~aa~~~g~til----~~~~h~F~p~~GvT~v~lLaESHisIHTwPE~g--yaavDiftCg-~~~~p~~a~~~L~~~f~~ 114 (127)
T PRK00458 42 KEAAKIANMTLL----DIKSWKFGKKGGVSVIALVLESHIAIHTWPEYN--FATVDVYTCG-EHTDPQKAFEYIVSKLKP 114 (127)
T ss_pred HHHHHHcCCEEE----EEEEEECCCCCCEEEEEEecccEEEEEeCcCCC--cEEEEEEecC-CCCCHHHHHHHHHHHhCC
Confidence 345555564432 346789998 89999999999999999999975 5555542122 223788999999999999
Q ss_pred ceEEEEEEEc
Q 019411 290 RDFSIAVHAE 299 (341)
Q Consensus 290 ~~f~vtlf~~ 299 (341)
++..++.+..
T Consensus 115 ~~~~~~~~~R 124 (127)
T PRK00458 115 KRYTVNYADR 124 (127)
T ss_pred CEEEEEEEec
Confidence 9999997764
No 13
>COG1586 SpeD S-adenosylmethionine decarboxylase [Amino acid transport and metabolism]
Probab=89.98 E-value=0.74 Score=40.76 Aligned_cols=69 Identities=20% Similarity=0.339 Sum_probs=57.8
Q ss_pred cccccCCCCCcccccccCCCceEEEEeeCCCCCeeEEEeecCCCCCC-CCHHHHHHHHhhccCCceEEEEEEEc
Q 019411 227 KICDFEFDPCGYSMNSVEGAAISTVHVTPEDGFSYASFETVGYDPND-VNLNQLVERVLACFQPRDFSIAVHAE 299 (341)
Q Consensus 227 ~id~~~F~PCGYSmNgi~~~~Y~TIHVTPE~~~SYaSFETn~~~~~~-~~~~~li~~VL~~F~P~~f~vtlf~~ 299 (341)
.+.-+-|.|=|=|-=.|..+..-|||.=||-+ ||..+.- .... .+...-++-+++-|+|.++++-....
T Consensus 53 ~~~~~~f~p~GvSgvvliaESHitiHTwPEyg--~A~iDVy--TCG~~~~p~~A~~yi~~~L~p~~v~v~~~~R 122 (136)
T COG1586 53 NIAFHKFSPQGVSGVVLIAESHITIHTWPEYG--YATIDVY--TCGDHIDPLKAFNYLVEQLKPKRVTVDYRDR 122 (136)
T ss_pred EEEeEEecCCCeEEEEEEEeeeeeEecCCccC--ceEEEEE--ccCCCCCHHHHHHHHHHHhCCcEEEEEEEec
Confidence 36788999999999999999999999999999 8888872 2222 57788899999999999999875554
No 14
>PRK05462 S-adenosylmethionine decarboxylase; Provisional
Probab=78.78 E-value=6.5 Score=38.38 Aligned_cols=71 Identities=18% Similarity=0.280 Sum_probs=55.7
Q ss_pred ccccCCCCCcccccccCCC---------------------------ceEEEEeeCCC----CCe--eEEEeecCCCCCCC
Q 019411 228 ICDFEFDPCGYSMNSVEGA---------------------------AISTVHVTPED----GFS--YASFETVGYDPNDV 274 (341)
Q Consensus 228 id~~~F~PCGYSmNgi~~~---------------------------~Y~TIHVTPE~----~~S--YaSFETn~~~~~~~ 274 (341)
|.-+-|+|=|=|...|..+ ...|||.=||. |++ ||....- .....
T Consensus 68 i~~qdf~PqGvSvtvLIsE~~~~~~~~~~~~~~gp~~~~vvahLdkSHITVHTwPE~hp~~GiatFrAdIDVf--TCG~i 145 (266)
T PRK05462 68 IARQDYEPQGASVTILISEEPVDPKLIDKSEHPGPLPETVVAHLDKSHITVHTYPESHPEGGICTFRADIDVS--TCGVI 145 (266)
T ss_pred eeeeecCCCCEEEEEEEecccccccccccccccCCCccchhcccccceEEEEcCCCCCCCCCccceeeEEEEE--cCCCC
Confidence 4567788988888877666 89999999998 454 5776763 22345
Q ss_pred CHHHHHHHHhhccCCceEEEEEEEcc
Q 019411 275 NLNQLVERVLACFQPRDFSIAVHAEV 300 (341)
Q Consensus 275 ~~~~li~~VL~~F~P~~f~vtlf~~~ 300 (341)
+....++-+.+.|+|...++...+..
T Consensus 146 sPlkAl~yLi~sF~sd~vtidy~vRG 171 (266)
T PRK05462 146 SPLKALNYLIHSFESDIVTIDYRVRG 171 (266)
T ss_pred CHHHHHHHHHHHhCCCeEEEEEEecC
Confidence 78888999999999999999877763
No 15
>TIGR03331 SAM_DCase_Eco S-adenosylmethionine decarboxylase proenzyme, Escherichia coli form. Members of this protein family are the single chain precursor of the S-adenosylmethionine decarboxylase as found in Escherichia coli. This form shows a substantially different architecture from the form shared by the Archaea, Bacillus, and many other species (TIGR03330). It shows little or no similarity to the form found in eukaryotes (TIGR00535).
Probab=67.08 E-value=19 Score=35.02 Aligned_cols=74 Identities=16% Similarity=0.217 Sum_probs=55.6
Q ss_pred ccccCCCCCcccccccCCC---------------------------ceEEEEeeCCCC--Cee----EEEeecCCCCCCC
Q 019411 228 ICDFEFDPCGYSMNSVEGA---------------------------AISTVHVTPEDG--FSY----ASFETVGYDPNDV 274 (341)
Q Consensus 228 id~~~F~PCGYSmNgi~~~---------------------------~Y~TIHVTPE~~--~SY----aSFETn~~~~~~~ 274 (341)
|.-+-|+|=|=|...|..+ ...|||.=||.+ -.| |..+.- .....
T Consensus 64 i~~qdf~PqGvSvtvLIaE~~~~~~~~~~~~~~gp~~~~vvahLdkSHITIHTwPE~hp~~Gi~tFrAdIDVf--TCG~i 141 (259)
T TIGR03331 64 IARQDYEPQGASVTILISEEPVEPEKIDNSESPGPLPDAVVAHLDKSHITVHTYPESHPDNGISTFRADIDVS--TCGVI 141 (259)
T ss_pred eeeeecCCCCEEEEEEEeccccccccccccccCCCCccchhcccccCeEEEEcCCCCCCCCCccceeEEEEEe--cCCCC
Confidence 4567788888888777665 899999999984 123 666653 22345
Q ss_pred CHHHHHHHHhhccCCceEEEEEEEccccc
Q 019411 275 NLNQLVERVLACFQPRDFSIAVHAEVAGK 303 (341)
Q Consensus 275 ~~~~li~~VL~~F~P~~f~vtlf~~~~~~ 303 (341)
+....++-+...|+|...++...+..-..
T Consensus 142 sPlkAl~yLi~sf~sd~vtidy~vRGftR 170 (259)
T TIGR03331 142 SPLKALNYLIHSFESDIVTIDYRVRGFTR 170 (259)
T ss_pred CHHHHHHHHHHHhCCCeEEEEEEecCCCC
Confidence 78888999999999999999987764433
No 16
>PRK05462 S-adenosylmethionine decarboxylase; Provisional
Probab=29.24 E-value=2.6e+02 Score=27.54 Aligned_cols=109 Identities=17% Similarity=0.296 Sum_probs=73.0
Q ss_pred HHHHHHhcccCCeEEeeeecCc----ee-eeeecC---------------------------ceEEE--ecce-------
Q 019411 46 AQLDEILGPAECTIVSSLSNDE----VD-SYVLSE---------------------------SSLFV--YSYK------- 84 (341)
Q Consensus 46 ~~w~~~L~~a~C~IlS~~sn~~----~D-AYvLSE---------------------------SSLFV--~~~k------- 84 (341)
+-+.++.+.++++||+...-+. +- .-|+|| |=+=| ||..
T Consensus 52 ~IL~eaa~~iGAtILni~~qdf~PqGvSvtvLIsE~~~~~~~~~~~~~~gp~~~~vvahLdkSHITVHTwPE~hp~~Gia 131 (266)
T PRK05462 52 EILTEVCSIIGANILNIARQDYEPQGASVTILISEEPVDPKLIDKSEHPGPLPETVVAHLDKSHITVHTYPESHPEGGIC 131 (266)
T ss_pred HHHHHHHHHcCCEEeeeeeeecCCCCEEEEEEEecccccccccccccccCCCccchhcccccceEEEEcCCCCCCCCCcc
Confidence 4466677888999999766432 22 345677 75544 7765
Q ss_pred -----EEEeccCchhhhcchHHHHHHHHHhCceeeEEEEccccccCCCCCCCCCCC-hHHHHHHHHHHhcCCCCCceeEE
Q 019411 85 -----IIIKTCGTTKLLLSIPPILKLAETLSLNVRSVRYTRGSFIFPGNQLYPHRN-FSEEVAVLDSYFGKLVSGSNAYI 158 (341)
Q Consensus 85 -----iILKTCGTTtLL~al~~ll~la~~~~~~v~~v~YSRknf~fP~~Q~~pH~s-f~~Ev~~L~~~F~~l~~~G~aY~ 158 (341)
|=+-|||....++|+..| ++.++-++..+.|-++-|...-.-. +- ..+++.-++.|.+. ..-..|-
T Consensus 132 tFrAdIDVfTCG~isPlkAl~yL---i~sF~sd~vtidy~vRGftrdv~G~---k~fidh~i~sIq~~i~~--~~~~~y~ 203 (266)
T PRK05462 132 TFRADIDVSTCGVISPLKALNYL---IHSFESDIVTIDYRVRGFTRDINGK---KHFIDHEINSIQNFISE--DTKSLYD 203 (266)
T ss_pred ceeeEEEEEcCCCCCHHHHHHHH---HHHhCCCeEEEEEEecCCccCCCCe---EeeccCccHHHHhhcCH--HHHhhcc
Confidence 468999999999999999 6666657777888888776543333 33 56678888888753 1234454
Q ss_pred ecCC
Q 019411 159 IGGS 162 (341)
Q Consensus 159 ~G~~ 162 (341)
|=++
T Consensus 204 ~~Dv 207 (266)
T PRK05462 204 MIDV 207 (266)
T ss_pred eEEe
Confidence 4443
No 17
>PF13619 KTSC: KTSC domain
Probab=29.06 E-value=67 Score=23.91 Aligned_cols=37 Identities=16% Similarity=0.285 Sum_probs=27.5
Q ss_pred CCCCCCcceEEEEEecCCCCcCCCCcccccccCHHHHHHHhcc
Q 019411 12 AIGFEGYEKRLEISFFEPSMFVDPEGKGLRRLTKAQLDEILGP 54 (341)
Q Consensus 12 ~~~FEG~EKrLEI~F~~~~~~~~~~~~gLR~i~r~~w~~~L~~ 54 (341)
..++.-..+.|||.|.... .---..+|...|+.+|.+
T Consensus 8 ~v~Yd~~~~~L~V~F~~G~------~Y~Y~~Vp~~~~~~l~~A 44 (60)
T PF13619_consen 8 SVGYDPETRTLEVEFKSGS------VYRYFGVPPEVYEALLNA 44 (60)
T ss_pred EEeECCCCCEEEEEEcCCC------EEEECCCCHHHHHHHHcC
Confidence 3567778899999997422 122558999999999974
No 18
>PF08149 BING4CT: BING4CT (NUC141) domain; InterPro: IPR012952 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This C-terminal domain is found in the BING4 family of nucleolar WD40 repeat proteins [].
Probab=27.47 E-value=77 Score=25.87 Aligned_cols=72 Identities=17% Similarity=0.290 Sum_probs=44.3
Q ss_pred cCCCCcccccCCCCCccccccc-CCCceEEEEeeCCCCCeeEEEeecCCCCCCCCHHHHHHHHhhccCCceEEE
Q 019411 222 ILPDSKICDFEFDPCGYSMNSV-EGAAISTVHVTPEDGFSYASFETVGYDPNDVNLNQLVERVLACFQPRDFSI 294 (341)
Q Consensus 222 l~P~~~id~~~F~PCGYSmNgi-~~~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~li~~VL~~F~P~~f~v 294 (341)
..|+..|.+..|-|.===. || ....|.+|=|-=--+--|-|+|.|.+.-...--..=|+++|+...|..-++
T Consensus 6 ~~~~~~v~~~~F~PfEDvL-gvGh~~G~sSiiVPGsGe~NfDs~e~NP~et~kqRrE~EV~~LLeKippd~I~L 78 (80)
T PF08149_consen 6 LKPGSPVESLRFCPFEDVL-GVGHSKGFSSIIVPGSGEPNFDSLEANPFETKKQRREREVRSLLEKIPPDMITL 78 (80)
T ss_pred cCCCCeeeeeEEechHHee-EeeccCceeEEeccCCCCCCCCcccCCcccchhHHhHHHHHHHHHhCCccceec
Confidence 4566677777777642000 11 134677876642233458899998765443344566999999999986543
No 19
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=27.13 E-value=1.1e+02 Score=28.13 Aligned_cols=45 Identities=20% Similarity=0.275 Sum_probs=32.8
Q ss_pred eEEEeccCchh---hhcch--HHHHHHHHHhCceeeEEEEccccccCCCC
Q 019411 84 KIIIKTCGTTK---LLLSI--PPILKLAETLSLNVRSVRYTRGSFIFPGN 128 (341)
Q Consensus 84 kiILKTCGTTt---LL~al--~~ll~la~~~~~~v~~v~YSRknf~fP~~ 128 (341)
+-+.-|||||. |+.|+ +..++-..++|+.=-.+-|-|.++.+|+.
T Consensus 4 ~~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~~~d~ 53 (170)
T KOG3349|consen 4 MTVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPFFGDP 53 (170)
T ss_pred eEEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCccCCCCH
Confidence 45667999997 45555 56777777888765667788988777754
No 20
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=26.60 E-value=2.3e+02 Score=21.66 Aligned_cols=46 Identities=22% Similarity=0.430 Sum_probs=31.4
Q ss_pred EEEeeCCCCC---eeEEEeecCCCCCCCCHHHHHHHHhhccC----CceEEEEEEEc
Q 019411 250 TVHVTPEDGF---SYASFETVGYDPNDVNLNQLVERVLACFQ----PRDFSIAVHAE 299 (341)
Q Consensus 250 TIHVTPE~~~---SYaSFETn~~~~~~~~~~~li~~VL~~F~----P~~f~vtlf~~ 299 (341)
+|+|-...+. .|.++-.. ..+...++|+.+|+.|+ |..|.+..+..
T Consensus 4 ~lrVy~~~~~~~~~~k~i~v~----~~tTa~evi~~~l~k~~l~~~~~~y~L~~~~~ 56 (93)
T PF00788_consen 4 VLRVYDGDGSPGSTYKTIKVS----SSTTAREVIEMALEKFGLAEDPSDYCLVEVEE 56 (93)
T ss_dssp EEEEEETTSSSCCSEEEEEEE----TTSBHHHHHHHHHHHTTTSSSGGGEEEEEEEC
T ss_pred EEEEEcCCCCCCccEEEEEEC----CCCCHHHHHHHHHHHhCCCCCCCCEEEEEEEc
Confidence 4555433333 37777773 34478899999999998 59999874443
No 21
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=23.00 E-value=3.5e+02 Score=20.80 Aligned_cols=46 Identities=24% Similarity=0.515 Sum_probs=32.9
Q ss_pred EEeeCCC--CCeeEEEeecCCCCCCCCHHHHHHHHhhcc----CCceEEEEEEEcc
Q 019411 251 VHVTPED--GFSYASFETVGYDPNDVNLNQLVERVLACF----QPRDFSIAVHAEV 300 (341)
Q Consensus 251 IHVTPE~--~~SYaSFETn~~~~~~~~~~~li~~VL~~F----~P~~f~vtlf~~~ 300 (341)
|+|-+++ +.+|.|.... ....-.++|+.+++.| .|..|.+......
T Consensus 2 ikV~~~~~~~~~~kti~V~----~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ev~~~ 53 (87)
T cd01768 2 LRVYPEDPSGGTYKTLRVS----KDTTAQDVIQQLLKKFGLDDDPEDYALVEVLGD 53 (87)
T ss_pred EEEeCCcCCCccEEEEEEC----CCCCHHHHHHHHHHHhCCcCCcccEEEEEEECC
Confidence 5555544 5778888773 3446789999999999 4678888766554
Done!