Query 019411
Match_columns 341
No_of_seqs 117 out of 290
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 15:40:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019411.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019411hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jl0_A Adometdc, S-adenosylmet 100.0 4E-118 1E-122 865.2 31.6 290 10-308 2-296 (334)
2 1mhm_A Adometdc, samdc, S-aden 100.0 6E-104 2E-108 752.9 23.2 265 76-340 1-288 (288)
3 1mhm_B Adometdc, samdc, S-aden 100.0 1.3E-29 4.6E-34 197.1 6.4 70 6-75 3-72 (72)
4 1vr7_A Adometdc, samdc, S-aden 95.3 0.018 6.3E-07 49.6 5.1 104 187-301 20-126 (142)
5 2iii_A S-adenosylmethionine de 94.8 0.016 5.6E-07 49.5 3.3 82 211-300 32-114 (135)
6 3vk8_A Probable formamidopyrim 20.1 11 0.00036 35.7 -2.2 74 40-134 191-291 (295)
7 2iii_A S-adenosylmethionine de 18.0 4.2E+02 0.014 22.0 8.2 82 45-129 28-122 (135)
8 3h0l_B Aspartyl/glutamyl-tRNA( 15.9 79 0.0027 32.0 2.9 33 98-130 57-90 (478)
9 3d2l_A SAM-dependent methyltra 14.9 1.2E+02 0.0041 25.4 3.5 32 40-71 198-229 (243)
10 2dhy_A CUE domain-containing p 14.9 1.1E+02 0.0039 22.7 2.9 24 126-150 9-32 (67)
No 1
>1jl0_A Adometdc, S-adenosylmethionine decarboxylase proenzyme; spermidine biosynthesis, lyase, pyruvate, sandwich, allosteric enzyme, pyruvoyl; 1.50A {Homo sapiens} SCOP: d.156.1.1 PDB: 1msv_A 1i7b_A* 1i79_A* 1i72_A* 1i7c_A* 1i7m_A* 3dz6_A* 3dz2_A* 3dz5_A* 3dz4_A* 3dz7_A* 3h0w_A* 3h0v_A* 1jen_A 3dz3_A* 3ep9_A 3ep6_A* 3ep3_A* 3ep8_A* 3ep5_A* ...
Probab=100.00 E-value=3.8e-118 Score=865.23 Aligned_cols=290 Identities=35% Similarity=0.594 Sum_probs=261.9
Q ss_pred cCCCCCCCcceEEEEEecCCCCcCCC-CcccccccCHHHHHHHhcccCCeEEeeeecCceeeeeecCceEEEecceEEEe
Q 019411 10 VSAIGFEGYEKRLEISFFEPSMFVDP-EGKGLRRLTKAQLDEILGPAECTIVSSLSNDEVDSYVLSESSLFVYSYKIIIK 88 (341)
Q Consensus 10 ~s~~~FEG~EKrLEI~F~~~~~~~~~-~~~gLR~i~r~~w~~~L~~a~C~IlS~~sn~~~DAYvLSESSLFV~~~kiILK 88 (341)
+++++|||+||||||||.++.. ..+ +..|||+|||++|++||+.|+|+|||+++|+++||||||||||||||+|||||
T Consensus 2 ds~~~FEG~EKrLEI~F~~~~~-~~~~~~~~LR~i~~~~w~~~L~~a~C~IlS~~sn~~~DAYvLSESSLFV~~~kiIlK 80 (334)
T 1jl0_A 2 EAAHFFEGTEKLLEVWFSRQQP-DANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQEAYVLSESSMFVSKRRFILK 80 (334)
T ss_dssp ---CCCCCCCEEEEEEEECCC------CCSCGGGSCHHHHHHHHHTTTCCEEEEEECSSEEEEEECCCCEEEESSEEEEE
T ss_pred CcCCCCcccceEEEEEEecCCc-cccCCCCccccCCHHHHHHHHHhcCCEEEEeecccccceEEeccceeeEECCEEEEE
Confidence 6899999999999999997531 122 34569999999999999999999999999999999999999999999999999
Q ss_pred ccCchhhhcchHHHHHHHHHh-Cc-eeeEEEEccccccCCCCCCCCCCChHHHHHHHHHHhcCCCCCceeEEecCCCCCC
Q 019411 89 TCGTTKLLLSIPPILKLAETL-SL-NVRSVRYTRGSFIFPGNQLYPHRNFSEEVAVLDSYFGKLVSGSNAYIIGGSGKPQ 166 (341)
Q Consensus 89 TCGTTtLL~al~~ll~la~~~-~~-~v~~v~YSRknf~fP~~Q~~pH~sf~~Ev~~L~~~F~~l~~~G~aY~~G~~~~~~ 166 (341)
||||||||+|||+||++|+++ |+ .|++|+||||||+||+.|++||++|+|||++|+++|+ +|+||+||++|+ |
T Consensus 81 TCGTT~LL~~l~~ll~la~~~~g~~~v~~v~YsRknf~fP~~Q~~pH~sf~eEv~~L~~~F~----~G~aY~~G~~~~-~ 155 (334)
T 1jl0_A 81 TCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHRNFQEEIEFLNAIFP----NGAGYCMGRMNS-D 155 (334)
T ss_dssp ECTTCCGGGGHHHHHHHHHHHHCCCEEEEEEEEEECCSSGGGCCTTCSSHHHHHHHHHTTCS----SEEEEEESCTTS-S
T ss_pred eCCCCcHHHHHHHHHHHHHHhcCccceeEEEEcccCCCCcccCCCccCCHHHHHHHHHHhcC----CCcEEEeCCCCC-C
Confidence 999999999999999999765 88 7999999999999999999999999999999999998 699999999996 7
Q ss_pred cEEEEecCCCCC-CCCCCceeEEEeecCCCHhhhhccccCCCCcHHHHHHHhCCcccCCCCcccccCCCCCcccccccCC
Q 019411 167 KWHVYSASAEPL-ISSDPVFTIEMCLTGLDREMASVFYKTQSGSAGAMTVNSGIRKILPDSKICDFEFDPCGYSMNSVEG 245 (341)
Q Consensus 167 ~W~lY~~~~~~~-~~~~~D~TlEIlMt~Ld~~~a~~F~~~~~~~~~~~t~~sGI~~l~P~~~id~~~F~PCGYSmNgi~~ 245 (341)
|||||+++.+.. ...++|+|||||||+||+++|++||++..++|++||+.+||++|+|+++||||+|+|||||||||.+
T Consensus 156 hw~ly~~~~~~~~~~~~~d~TlEilMt~Ld~~~a~~F~~~~~~~a~~~t~~sgi~~i~P~~~iddf~F~PCGYSmNgi~~ 235 (334)
T 1jl0_A 156 CWYLYTLDFPESRVISQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKS 235 (334)
T ss_dssp CEEEEEECCC---CCCSCCEEEEEEEESCCHHHHGGGBCBTTBCHHHHHHHTTCTTSSSSCEEEEEECSSBCEEEEEECT
T ss_pred eeEEEecCCcccccCCCCcceEEEEccCCCHHHHhhhhcCcCCcHHHHHHHhChhhcCCCcEeeccccCCccceeccccC
Confidence 999999976642 2457899999999999999999999999999999999999999999999999999999999999995
Q ss_pred -CceEEEEeeCCCCCeeEEEeecCCCCCCCCHHHHHHHHhhccCCceEEEEEEEccccchhhhh
Q 019411 246 -AAISTVHVTPEDGFSYASFETVGYDPNDVNLNQLVERVLACFQPRDFSIAVHAEVAGKMIEQK 308 (341)
Q Consensus 246 -~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~li~~VL~~F~P~~f~vtlf~~~~~~~~~~~ 308 (341)
++|+|||||||++||||||||| +...++.+||+|||++|+|++|+||+|++..++.....
T Consensus 236 ~~~Y~TIHVTPE~~~SYaSFETN---~~~~~~~~lv~~Vl~~F~P~~fsvt~f~~~~~~~~~~~ 296 (334)
T 1jl0_A 236 DGTYWTIAITPEPEFSYVSFETN---LSQTSYDDLIRKVVEVFKPGKFVTTLFVNQSSKCRTVL 296 (334)
T ss_dssp TSCEEEEEEECCTTSCEEEEEEC---CCCSCSHHHHHHHHHHHCCSEEEEEEEEETTCCC----
T ss_pred CCeEEEEEecCCCCCeeEEEEcC---cccccHHHHHHHHHheeCCCeEEEEEEcCCccccchhh
Confidence 5999999999999999999995 55668899999999999999999999999877654433
No 2
>1mhm_A Adometdc, samdc, S-adenosylmethionine decarboxylase; covalent pyruvoyl group, lyase; 2.30A {Solanum tuberosum} SCOP: d.156.1.1
Probab=100.00 E-value=6.4e-104 Score=752.94 Aligned_cols=265 Identities=70% Similarity=1.171 Sum_probs=214.5
Q ss_pred ceEEEecceEEEeccCchhhhcchHHHHHHHHHhCceeeEEEEccccccCCCCCCCCCCChHHHHHHHHHHhcCCCCCce
Q 019411 76 SSLFVYSYKIIIKTCGTTKLLLSIPPILKLAETLSLNVRSVRYTRGSFIFPGNQLYPHRNFSEEVAVLDSYFGKLVSGSN 155 (341)
Q Consensus 76 SSLFV~~~kiILKTCGTTtLL~al~~ll~la~~~~~~v~~v~YSRknf~fP~~Q~~pH~sf~~Ev~~L~~~F~~l~~~G~ 155 (341)
|||||||+|||||||||||||+|||+||++|+++|++|++|+||||||+||++|++||++|+|||++|+++|++|+++|+
T Consensus 1 SSLFV~~~kiIlKTCGTT~LL~~l~~ll~la~~~g~~v~~v~YsRknf~fP~~Q~~pH~sf~eEV~~L~~~F~~~~~~G~ 80 (288)
T 1mhm_A 1 XSLFVYSYKIIIKTCGTTKLLLAIPPILRLAETLSLKVQDVRYTRGSFIFPGAQSFPHRHFSEEVAVLDGYFGKLAAGSK 80 (288)
T ss_dssp -CEEEETTEEEEEEETTSCGGGGHHHHHHHHHHTTCCEEEEEEEECC-----------CCHHHHHHHHHHHHTTSTTCEE
T ss_pred CCccccCCEEEEEeCCCccHHHHHHHHHHHHHHcCCceEEEEEecccCCCcccCCCCcCCHHHHHHHHHHHhcccCCCce
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999998888999
Q ss_pred eEEecCCCCCCcEEEEecCCCCCCCCCCceeEEEeecCCCHhhhhccccCCCCcHHHHHHHhCCcccCCCCcccccCCCC
Q 019411 156 AYIIGGSGKPQKWHVYSASAEPLISSDPVFTIEMCLTGLDREMASVFYKTQSGSAGAMTVNSGIRKILPDSKICDFEFDP 235 (341)
Q Consensus 156 aY~~G~~~~~~~W~lY~~~~~~~~~~~~D~TlEIlMt~Ld~~~a~~F~~~~~~~~~~~t~~sGI~~l~P~~~id~~~F~P 235 (341)
||+||++|++||||||+++.......++|+|||||||+||+++|++||++++++|++||+.+||++|+|+++||||+|+|
T Consensus 81 aY~~G~~~~~~~W~lY~~~~~~~~~~~~d~TlEilMt~Ld~~~a~~F~~~~~~sa~~~t~~sGi~~i~P~~~iddf~F~P 160 (288)
T 1mhm_A 81 AVIMGSPDKTQKWHVYSASAGSVQSNDPVYTLEMCMTGLDREKASVFYKTEESSAAHMTVRSGIRKILPKSEICDFEFEP 160 (288)
T ss_dssp EEEESSSCSSCCEEEEEEESCCCCCSSCCCEEEEEEEEECHHHHHTTSCCSSCCHHHHHHHHTGGGTSTTSEEEEEECSS
T ss_pred eEEeCCCCCCCceEEEeCCCCcccCCCCcceEEEeecCCCHHHHHhhhccccccHHHHHHHhChhhcCCCcEeeccccCC
Confidence 99999999999999999986543445789999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccCCCceEEEEeeCCCCCeeEEEeecCCCCCCCCHHHHHHHHhhccCCceEEEEEEEccccchhhhhcccc---
Q 019411 236 CGYSMNSVEGAAISTVHVTPEDGFSYASFETVGYDPNDVNLNQLVERVLACFQPRDFSIAVHAEVAGKMIEQKCLLN--- 312 (341)
Q Consensus 236 CGYSmNgi~~~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~li~~VL~~F~P~~f~vtlf~~~~~~~~~~~~~~~--- 312 (341)
||||||||.|++|+|||||||++|||||||||++|.+..++.+||+|||++|+|++|+||+|++.+++.......++
T Consensus 161 CGYSmNgi~g~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~lv~~Vl~~F~P~~fsvt~~~~~~~~~~~~~~~~~~~g 240 (288)
T 1mhm_A 161 CGYSMNSIEGAAVSTIHITPEDGFTYASFESVGYNPKTMELGPLVERVLACFEPAEFSVALHADVATKLLERICSVDVKG 240 (288)
T ss_dssp SCEEEEEEETTEEEEEEEECCTTSCEEEEEEESCCTTTSCHHHHHHHHHHHHCEEEEEEEEEESSCHHHHHHHHCCCCTT
T ss_pred ccceeccccCCceEEEEeCCCCCCeeEEEEecCCCcccccHHHHHHHHHheeCCCEEEEEEEecccchhhhhhccCCcCC
Confidence 99999999999999999999999999999999988887899999999999999999999999997666544322222
Q ss_pred --------------------ceecccCCCCCCccccccccchhhhccc
Q 019411 313 --------------------KFVKTEGNGSPRSTLKCYWKEEEEYEED 340 (341)
Q Consensus 313 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (341)
+|.+...+|||||+|+|||+++++|++|
T Consensus 241 y~~~~~~~~~l~~gy~l~y~~f~~~~~~~~p~~~~~~~~~~~~~~~~~ 288 (288)
T 1mhm_A 241 YSLAEWSPEEFGEGGSIVYQKFTRTPYCESPKSVLKGCWKEEEKEGKE 288 (288)
T ss_dssp EEEEEEEEEECGGGCEEEEEEEEEC-----------------------
T ss_pred CeEcccEEEECCCCcEEEEEEEeccCCCCCCcchhhhhhcccccccCC
Confidence 7777778999999999889999988876
No 3
>1mhm_B Adometdc, samdc, S-adenosylmethionine decarboxylase; covalent pyruvoyl group, lyase; 2.30A {Solanum tuberosum} SCOP: d.156.1.1
Probab=99.96 E-value=1.3e-29 Score=197.09 Aligned_cols=70 Identities=79% Similarity=1.216 Sum_probs=51.6
Q ss_pred cccccCCCCCCCcceEEEEEecCCCCcCCCCcccccccCHHHHHHHhcccCCeEEeeeecCceeeeeecC
Q 019411 6 TTMAVSAIGFEGYEKRLEISFFEPSMFVDPEGKGLRRLTKAQLDEILGPAECTIVSSLSNDEVDSYVLSE 75 (341)
Q Consensus 6 ~~~~~s~~~FEG~EKrLEI~F~~~~~~~~~~~~gLR~i~r~~w~~~L~~a~C~IlS~~sn~~~DAYvLSE 75 (341)
++++.++.+|||+||||||||.+++.+.++++.|||+|||++|++||+.|+|+|||+++|+++|||||||
T Consensus 3 ~~~~~s~~~FEG~EK~LEI~F~~~~~~~~~~~~gLR~i~r~~w~~~L~~a~C~IlS~~sn~~~DAYvLSE 72 (72)
T 1mhm_B 3 MDLPVSAIGFEGFEKRLEISFVEPGLFADPNGKGLRSLSKAQLDEILGPAECTIVDNLSNDYVDSYVLSE 72 (72)
T ss_dssp ------------CEEEEEEEECCCCCC----CCCGGGCCHHHHHHHHHHHTCEEEEEEECSSCEEEEEEC
T ss_pred cccCCCCCCcccceEEEEEEEecCCccCCCCcCccccCCHHHHHHHHhhcCCEEEEEecCCcceeEEecC
Confidence 5678899999999999999999776555677899999999999999999999999999999999999998
No 4
>1vr7_A Adometdc, samdc, S-adenosylmethionine decarboxylase proenzyme; TM0655, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.20A {Thermotoga maritima} SCOP: d.156.1.2 PDB: 1tlu_A 1tmi_A 3iwc_A* 3iwb_A* 3iwd_A* 3iwc_B* 3iwb_B* 3iwd_B*
Probab=95.34 E-value=0.018 Score=49.65 Aligned_cols=104 Identities=20% Similarity=0.231 Sum_probs=73.5
Q ss_pred EEEeecCCCHhhhhccccCCC---CcHHHHHHHhCCcccCCCCcccccCCCCCcccccccCCCceEEEEeeCCCCCeeEE
Q 019411 187 IEMCLTGLDREMASVFYKTQS---GSAGAMTVNSGIRKILPDSKICDFEFDPCGYSMNSVEGAAISTVHVTPEDGFSYAS 263 (341)
Q Consensus 187 lEIlMt~Ld~~~a~~F~~~~~---~~~~~~t~~sGI~~l~P~~~id~~~F~PCGYSmNgi~~~~Y~TIHVTPE~~~SYaS 263 (341)
+=+=+|+-+++... +.. ..-.+..+..|..-+ .+.-+.|+|=|+|.=+|..+...+||.=||.+ ||+
T Consensus 20 li~DlygC~~~~L~----D~e~l~~~l~eAa~~~gatvl----~~~~h~F~P~GvSgvvllaESHIsIHTwPE~g--yAa 89 (142)
T 1vr7_A 20 LVAEFYECDREVLD----NVQLIEQEMKQAAYESGATIV----TSTFHRFLPYGVSGVVVISESHLTIHTWPEYG--YAA 89 (142)
T ss_dssp EEEEEESCCHHHHT----CHHHHHHHHHHHHHHHTCCEE----EEEEEECSSSCEEEEEEETTEEEEEEEEGGGT--EEE
T ss_pred EEEEEcCCChHHCC----CHHHHHHHHHHHHHHcCCEEe----EEEEEEcCCCCeEEEEEecccEEEEEeCCCCC--eEE
Confidence 33445677766533 221 223455555665543 34568899999999999999999999999999 566
Q ss_pred EeecCCCCCCCCHHHHHHHHhhccCCceEEEEEEEccc
Q 019411 264 FETVGYDPNDVNLNQLVERVLACFQPRDFSIAVHAEVA 301 (341)
Q Consensus 264 FETn~~~~~~~~~~~li~~VL~~F~P~~f~vtlf~~~~ 301 (341)
...=-++ ...+....++-+.+.|+|++..++.+....
T Consensus 90 vDVftCg-~~~~P~~a~~~L~~~f~a~~~~~~~~~RG~ 126 (142)
T 1vr7_A 90 IDLFTCG-EDVDPWKAFEHLKKALKAKRVHVVEHERGR 126 (142)
T ss_dssp EEEEEES-TTCCHHHHHHHHHHHHTCSEEEEEEEEEEE
T ss_pred EEEEccC-CCCCHHHHHHHHHHHhCCCeEEEEEEeCCC
Confidence 6652112 224788999999999999999998777643
No 5
>2iii_A S-adenosylmethionine decarboxylase proenzyme; two-layer alpha beta-sandwich, structural genomics, NPPSFA; 2.30A {Aquifex aeolicus}
Probab=94.83 E-value=0.016 Score=49.49 Aligned_cols=82 Identities=17% Similarity=0.292 Sum_probs=61.8
Q ss_pred HHHHHHhCCcccCCCCcccccCCCCCcccccccCCCceEEEEeeCCCCCeeEEEeecCCCCCC-CCHHHHHHHHhhccCC
Q 019411 211 GAMTVNSGIRKILPDSKICDFEFDPCGYSMNSVEGAAISTVHVTPEDGFSYASFETVGYDPND-VNLNQLVERVLACFQP 289 (341)
Q Consensus 211 ~~~t~~sGI~~l~P~~~id~~~F~PCGYSmNgi~~~~Y~TIHVTPE~~~SYaSFETn~~~~~~-~~~~~li~~VL~~F~P 289 (341)
.+..+..|..-+= +.-+.|+|=|+|.=+|..+...+||.=||.+ ||+...= .... .+....++-+.+.|+|
T Consensus 32 ~~aa~~~gatvl~----~~~h~F~P~GvSgvvllaESHisIHTwPE~g--yaavDvf--tCg~~~~P~~a~~~l~~~f~a 103 (135)
T 2iii_A 32 EGAVKYANLTKIS----SHYYQFQPHGATGVVLLAESHISIHTWPEHG--LATVDVY--TCGDPSKAYRAMDYIITQLNP 103 (135)
T ss_dssp HHHHHHTTCCEEE----EEEEECSSSCEEEEEEEC-CEEEEEEEGGGT--EEEEEEE--EESCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHcCCEEEE----EEEEEcCCCCeEEEEEecccEEEEEeCCCCC--cEEEEEE--ccCCCCCHHHHHHHHHHHhCC
Confidence 3555555554432 4568899999999999999999999999999 5666651 1122 3688899999999999
Q ss_pred ceEEEEEEEcc
Q 019411 290 RDFSIAVHAEV 300 (341)
Q Consensus 290 ~~f~vtlf~~~ 300 (341)
++..++.+...
T Consensus 104 ~~~~~~~~~RG 114 (135)
T 2iii_A 104 KRIDKQVHERG 114 (135)
T ss_dssp SEEEEEEEEEE
T ss_pred CeEEEEEEeCC
Confidence 99999977663
No 6
>3vk8_A Probable formamidopyrimidine-DNA glycosylase; DNA glycosylase, hneil1 ortholog, DNA lesion, thymine glycol zincless finger; HET: DNA CTG; 2.00A {Acanthamoeba polyphaga mimivirus} PDB: 3vk7_A* 3a42_A 3a46_A* 3a45_A*
Probab=20.09 E-value=11 Score=35.67 Aligned_cols=74 Identities=18% Similarity=0.205 Sum_probs=50.9
Q ss_pred ccccCHHHHHHHhcccCCeEEeeeecCceeeeeec---------------------CceEEEecceEEEeccCchhhhcc
Q 019411 40 LRRLTKAQLDEILGPAECTIVSSLSNDEVDSYVLS---------------------ESSLFVYSYKIIIKTCGTTKLLLS 98 (341)
Q Consensus 40 LR~i~r~~w~~~L~~a~C~IlS~~sn~~~DAYvLS---------------------ESSLFV~~~kiILKTCGTTtLL~a 98 (341)
.++|++++|+.+.+.+.-.+-..+....++.|+=. ..+|.||.+. =+-|||
T Consensus 191 ~~~Ls~~~~~~L~~~i~~vL~~ai~~gg~~~~~~~~g~~G~~~~~~~~~~~~~~~~~~~~~VYgR~--g~PCG~------ 262 (295)
T 3vk8_A 191 GSNLTDQEIENLWYWIKYETKLAYDSNHIGYMVNLENESSKIGRKNYHPNIHPTEKEFDFLVYRKK--KDPNGN------ 262 (295)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHHHCSCSSTTGGGHHHHTTSCCCCCSTTCCCSSSSCCCSSTTCS--BCTTSC------
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHhCCCcceecCCCCcccccccccccccccccccceEEEeCCC--CCCCCC------
Confidence 56799999999998877665555555556666432 5678888763 234644
Q ss_pred hHHHHHHHHHhCceeeEEEE------ccccccCCCCCCCCCC
Q 019411 99 IPPILKLAETLSLNVRSVRY------TRGSFIFPGNQLYPHR 134 (341)
Q Consensus 99 l~~ll~la~~~~~~v~~v~Y------SRknf~fP~~Q~~pH~ 134 (341)
.|....+ .|..|+.|..|+-.|.
T Consensus 263 -------------~I~~~~~~~~~~~~R~t~~CP~CQ~~~~~ 291 (295)
T 3vk8_A 263 -------------KVIADKIIGSGKNKRTTYWAPAIQKLEHH 291 (295)
T ss_dssp -------------BCEEEECSCCTTCCCEEEECTTTCBCC--
T ss_pred -------------cEEEEEecCCCCCCCccEECCCCCCCccc
Confidence 3566666 7999999999998875
No 7
>2iii_A S-adenosylmethionine decarboxylase proenzyme; two-layer alpha beta-sandwich, structural genomics, NPPSFA; 2.30A {Aquifex aeolicus}
Probab=17.97 E-value=4.2e+02 Score=21.95 Aligned_cols=82 Identities=22% Similarity=0.237 Sum_probs=54.1
Q ss_pred HHHHHHHhcccCCeEEeeeec----Ccee-eeeecCceE--EEecce----EEEeccCc-hhhhcchHHHHHHHHHhCc-
Q 019411 45 KAQLDEILGPAECTIVSSLSN----DEVD-SYVLSESSL--FVYSYK----IIIKTCGT-TKLLLSIPPILKLAETLSL- 111 (341)
Q Consensus 45 r~~w~~~L~~a~C~IlS~~sn----~~~D-AYvLSESSL--FV~~~k----iILKTCGT-TtLL~al~~ll~la~~~~~- 111 (341)
+....+..+.++.+|++...- .++- .-||+||=+ =.||.. |=+=|||. +...+|+..| .+.++-
T Consensus 28 ~~~l~~aa~~~gatvl~~~~h~F~P~GvSgvvllaESHisIHTwPE~gyaavDvftCg~~~~P~~a~~~l---~~~f~a~ 104 (135)
T 2iii_A 28 RELLEGAVKYANLTKISSHYYQFQPHGATGVVLLAESHISIHTWPEHGLATVDVYTCGDPSKAYRAMDYI---ITQLNPK 104 (135)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEECSSSCEEEEEEEC-CEEEEEEEGGGTEEEEEEEEESCHHHHHHHHHHH---HHHHCCS
T ss_pred HHHHHHHHHHcCCEEEEEEEEEcCCCCeEEEEEecccEEEEEeCCCCCcEEEEEEccCCCCCHHHHHHHH---HHHhCCC
Confidence 567788889999999997642 2222 237899954 457764 66889999 4888888888 555543
Q ss_pred eeeEEEEccccccCCCCC
Q 019411 112 NVRSVRYTRGSFIFPGNQ 129 (341)
Q Consensus 112 ~v~~v~YSRknf~fP~~Q 129 (341)
++..-...|+.+--+..|
T Consensus 105 ~~~~~~~~RG~~~~~~~~ 122 (135)
T 2iii_A 105 RIDKQVHERGIVEEESNQ 122 (135)
T ss_dssp EEEEEEEEEEEECSSCCC
T ss_pred eEEEEEEeCCCccccccc
Confidence 355555566655444433
No 8
>3h0l_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_B 3h0r_B*
Probab=15.87 E-value=79 Score=32.00 Aligned_cols=33 Identities=12% Similarity=0.315 Sum_probs=24.9
Q ss_pred chHHHHHHHHHhCcee-eEEEEccccccCCCCCC
Q 019411 98 SIPPILKLAETLSLNV-RSVRYTRGSFIFPGNQL 130 (341)
Q Consensus 98 al~~ll~la~~~~~~v-~~v~YSRknf~fP~~Q~ 130 (341)
||..-++++..++-+| .+..|.||||+.|++-+
T Consensus 57 av~~Ai~~~lALnc~I~~~s~FdRK~YfYpDlPk 90 (478)
T 3h0l_B 57 AVEYAIRASLALNCEVHEESVFARKHYFYPDLPK 90 (478)
T ss_dssp HHHHHHHHHHHTTCEECSEECEEEEECCCTTCTT
T ss_pred HHHHHHHHHHHcCCcccccceeeeccccCCCCCc
Confidence 4444566666776664 68999999999999866
No 9
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=14.93 E-value=1.2e+02 Score=25.38 Aligned_cols=32 Identities=16% Similarity=0.059 Sum_probs=26.6
Q ss_pred ccccCHHHHHHHhcccCCeEEeeeecCceeee
Q 019411 40 LRRLTKAQLDEILGPAECTIVSSLSNDEVDSY 71 (341)
Q Consensus 40 LR~i~r~~w~~~L~~a~C~IlS~~sn~~~DAY 71 (341)
+|..+.++|.++|+.|+-+++....+-....+
T Consensus 198 ~~~~~~~~l~~~l~~aGf~~~~~~~~~~~~~~ 229 (243)
T 3d2l_A 198 QRTYPPEQYITWLREAGFRVCAVTGDFKSDAP 229 (243)
T ss_dssp EECCCHHHHHHHHHHTTEEEEEEEETTSSSCC
T ss_pred EecCCHHHHHHHHHHCCCeEEEEecCcccCCC
Confidence 46789999999999999999999876555444
No 10
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=14.89 E-value=1.1e+02 Score=22.73 Aligned_cols=24 Identities=17% Similarity=0.407 Sum_probs=19.1
Q ss_pred CCCCCCCCCChHHHHHHHHHHhcCC
Q 019411 126 PGNQLYPHRNFSEEVAVLDSYFGKL 150 (341)
Q Consensus 126 P~~Q~~pH~sf~~Ev~~L~~~F~~l 150 (341)
|..| .++..|.+-++.|+++||++
T Consensus 9 ~~~~-~~~~~~~~~v~~L~~MFP~l 32 (67)
T 2dhy_A 9 PARQ-VRRLEFNQAMDDFKTMFPNM 32 (67)
T ss_dssp CCCC-CCCCCSHHHHHHHHHHCSSS
T ss_pred cchh-ccCCCHHHHHHHHHHHCCCC
Confidence 4444 46778999999999999964
Done!