BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019413
         (341 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q63HK3|ZKSC2_HUMAN Zinc finger protein with KRAB and SCAN domains 2 OS=Homo sapiens
           GN=ZKSCAN2 PE=1 SV=2
          Length = 967

 Score = 34.3 bits (77), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 4/50 (8%)

Query: 111 KTDIQCKNRIDTVKKKYKLEKTKIMSGGGSSKWVFFEKLDQLIGPTAKIP 160
           +T  QC+ +  +++K Y+    K+ +G       FFE +D L+ P A+ P
Sbjct: 388 RTPEQCRTKFKSLQKSYR----KVRNGHMLEPCAFFEDMDALLNPAARAP 433


>sp|H3K2Y6|MED12_ARATH Mediator of RNA polymerase II transcription subunit 12 OS=Arabidopsis
            thaliana GN=MED12 PE=1 SV=1
          Length = 2235

 Score = 33.5 bits (75), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 173  PVGIPVGVRNPGKNQQERNVFVGGQRSSRMELRKRAAVETEEEEESE 219
            P+G+P GV NP  +   + + +GG R SR+ L  R  ++   EE + 
Sbjct: 1196 PLGVPAGVDNP-DDYLRKKISIGGARPSRVGLSMRDVLQRHVEEATH 1241


>sp|Q8IDX6|RBP2A_PLAF7 Reticulocyte-binding protein 2 homolog a OS=Plasmodium falciparum
            (isolate 3D7) GN=PF13_0198 PE=3 SV=1
          Length = 3130

 Score = 33.1 bits (74), Expect = 3.4,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 61/130 (46%), Gaps = 14/130 (10%)

Query: 197  QRSSRMELRKRAAVETEEEEESEEESR------------DSIDSFPPAKRKRVEGESGKG 244
            Q   R+E  K+  ++ EEE + +E+ R            + +      KR+  E    + 
Sbjct: 2756 QEQERLEREKQEQLQKEEELKRQEQERLQKEEALKRQEQERLQKEEELKRQEQERLEREK 2815

Query: 245  KEKGGWGDSVKLLTQAILKFGEAYEQAESAKLQQVVEMEKQRMKF--AKEMELQRMQFFM 302
            +E+    + +K   Q  L+  EA ++ E  +LQ+  E+++Q  +    K++EL   +  +
Sbjct: 2816 QEQLQKEEELKRQEQERLQKEEALKRQEQERLQKEEELKRQEQERLERKKIELAEREQHI 2875

Query: 303  KTQLEISQLK 312
            K++LE   +K
Sbjct: 2876 KSKLESDMVK 2885


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.309    0.128    0.362 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 133,688,818
Number of Sequences: 539616
Number of extensions: 5933111
Number of successful extensions: 66415
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 217
Number of HSP's that attempted gapping in prelim test: 59827
Number of HSP's gapped (non-prelim): 5600
length of query: 341
length of database: 191,569,459
effective HSP length: 118
effective length of query: 223
effective length of database: 127,894,771
effective search space: 28520533933
effective search space used: 28520533933
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 61 (28.1 bits)