Query 019413
Match_columns 341
No_of_seqs 192 out of 346
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 09:16:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019413.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019413hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4282 Transcription factor G 100.0 1.1E-31 2.3E-36 261.0 23.8 244 61-313 54-317 (345)
2 PF13837 Myb_DNA-bind_4: Myb/S 99.8 6.3E-20 1.4E-24 145.0 6.8 85 62-152 2-90 (90)
3 smart00595 MADF subfamily of S 98.6 3.4E-08 7.5E-13 78.2 4.2 73 72-153 2-85 (89)
4 PF12776 Myb_DNA-bind_3: Myb/S 98.6 3E-07 6.5E-12 73.5 8.7 70 63-135 1-73 (96)
5 PF10545 MADF_DNA_bdg: Alcohol 98.5 9.5E-08 2.1E-12 73.7 3.2 74 72-152 1-85 (85)
6 PF13873 Myb_DNA-bind_5: Myb/S 98.3 3.4E-06 7.4E-11 65.6 8.0 70 60-132 1-77 (78)
7 PF00249 Myb_DNA-binding: Myb- 97.6 0.00011 2.4E-09 52.5 4.7 47 62-124 2-48 (48)
8 PF13921 Myb_DNA-bind_6: Myb-l 97.1 0.00076 1.6E-08 49.8 4.5 43 64-124 1-44 (60)
9 smart00717 SANT SANT SWI3, AD 97.0 0.00078 1.7E-08 46.0 3.6 47 62-125 2-48 (49)
10 cd00167 SANT 'SWI3, ADA2, N-Co 96.8 0.0018 3.9E-08 43.6 3.8 45 63-124 1-45 (45)
11 PF04504 DUF573: Protein of un 95.9 0.055 1.2E-06 44.9 8.3 70 63-137 6-75 (98)
12 PLN03212 Transcription repress 95.2 0.045 9.7E-07 52.6 6.4 52 60-129 77-128 (249)
13 PLN03091 hypothetical protein; 95.2 0.044 9.6E-07 56.5 6.5 52 61-130 67-118 (459)
14 PLN03212 Transcription repress 93.9 0.091 2E-06 50.6 5.1 47 60-122 24-70 (249)
15 PLN03091 hypothetical protein; 91.6 0.25 5.4E-06 51.1 4.8 47 60-122 13-59 (459)
16 COG5259 RSC8 RSC chromatin rem 91.3 0.28 6.2E-06 51.0 4.8 46 60-123 278-323 (531)
17 KOG1279 Chromatin remodeling f 88.6 0.51 1.1E-05 49.7 4.3 49 57-123 249-297 (506)
18 KOG0051 RNA polymerase I termi 81.1 2.2 4.8E-05 45.9 4.9 66 60-133 435-516 (607)
19 KOG0048 Transcription factor, 81.0 4.3 9.3E-05 38.3 6.3 53 61-131 62-115 (238)
20 TIGR02894 DNA_bind_RsfA transc 81.0 4.1 9E-05 37.1 5.9 61 59-131 2-63 (161)
21 PRK13923 putative spore coat p 80.8 5.3 0.00011 36.7 6.5 61 59-131 3-64 (170)
22 PF03353 Lin-8: Ras-mediated v 77.1 6.2 0.00013 38.5 6.3 82 63-149 19-112 (313)
23 KOG4348 Adaptor protein CMS/SE 69.3 17 0.00038 38.2 7.5 55 252-314 569-623 (627)
24 KOG0049 Transcription factor, 65.2 12 0.00027 41.0 5.6 56 57-128 249-304 (939)
25 KOG0457 Histone acetyltransfer 64.0 11 0.00023 39.3 4.7 60 38-118 53-112 (438)
26 PF15444 TMEM247: Transmembran 62.9 11 0.00023 35.3 4.1 32 278-309 102-143 (218)
27 TIGR01557 myb_SHAQKYF myb-like 57.0 31 0.00067 26.0 5.1 46 61-121 3-51 (57)
28 COG1422 Predicted membrane pro 50.1 1.1E+02 0.0024 28.9 8.7 49 261-311 64-120 (201)
29 KOG1924 RhoA GTPase effector D 49.2 20 0.00043 40.2 4.1 17 253-269 974-990 (1102)
30 KOG4661 Hsp27-ERE-TATA-binding 46.2 41 0.00088 36.7 5.7 23 281-304 664-686 (940)
31 PF07227 DUF1423: Protein of u 45.9 87 0.0019 32.9 7.9 55 250-307 365-424 (446)
32 KOG0048 Transcription factor, 41.2 23 0.00049 33.4 2.7 44 62-122 10-54 (238)
33 PF12037 DUF3523: Domain of un 40.7 1.4E+02 0.003 29.6 8.1 50 258-307 132-182 (276)
34 PF04687 Microvir_H: Microviru 37.7 32 0.0007 33.4 3.1 39 271-313 126-164 (310)
35 PHA00369 H minor spike protein 37.3 36 0.00078 33.2 3.4 39 271-313 142-180 (325)
36 KOG0559 Dihydrolipoamide succi 33.0 32 0.00069 35.5 2.4 39 95-133 239-278 (457)
37 KOG4403 Cell surface glycoprot 32.8 2.1E+02 0.0045 30.4 8.2 24 254-277 251-274 (575)
38 KOG1924 RhoA GTPase effector D 31.2 71 0.0015 36.2 4.8 41 59-102 626-668 (1102)
39 PF00046 Homeobox: Homeobox do 31.0 1.9E+02 0.0042 20.4 7.4 54 61-129 4-57 (57)
40 PF06576 DUF1133: Protein of u 30.8 77 0.0017 29.4 4.3 27 95-125 135-161 (176)
41 PF05278 PEARLI-4: Arabidopsis 30.1 2.4E+02 0.0051 27.9 7.7 36 253-289 174-209 (269)
42 PF13767 DUF4168: Domain of un 30.0 2.1E+02 0.0046 22.2 6.2 47 260-312 5-51 (78)
43 cd07633 BAR_OPHN1 The Bin/Amph 29.9 1.1E+02 0.0024 29.0 5.3 24 255-278 63-86 (207)
44 PF13404 HTH_AsnC-type: AsnC-t 29.4 76 0.0016 22.3 3.2 24 92-124 19-42 (42)
45 KOG2264 Exostosin EXT1L [Signa 29.1 2.3E+02 0.005 31.2 8.0 37 252-288 79-115 (907)
46 cd07646 I-BAR_IMD_IRSp53 Inver 28.0 5.4E+02 0.012 24.9 9.6 60 254-313 65-142 (232)
47 PF04568 IATP: Mitochondrial A 27.9 1.7E+02 0.0036 24.8 5.5 41 260-300 46-92 (100)
48 PF11433 DUF3198: Protein of u 27.7 86 0.0019 23.4 3.3 25 253-277 22-47 (51)
49 PF08397 IMD: IRSp53/MIM homol 27.4 5E+02 0.011 24.0 11.0 63 254-317 53-134 (219)
50 PRK09173 F0F1 ATP synthase sub 27.4 3.2E+02 0.007 23.8 7.6 43 269-311 83-125 (159)
51 cd07605 I-BAR_IMD Inverse (I)- 27.3 4.5E+02 0.0097 25.0 9.0 61 253-314 62-141 (223)
52 PRK13460 F0F1 ATP synthase sub 26.4 4.2E+02 0.0091 23.6 8.3 41 272-312 100-140 (173)
53 KOG0049 Transcription factor, 24.5 83 0.0018 34.9 3.8 45 62-123 361-405 (939)
54 PRK08476 F0F1 ATP synthase sub 24.2 4.7E+02 0.01 22.6 8.1 43 270-312 89-131 (141)
55 KOG0050 mRNA splicing protein 23.3 71 0.0015 34.4 3.0 24 90-121 27-50 (617)
56 PF03179 V-ATPase_G: Vacuolar 22.9 3.2E+02 0.007 22.2 6.3 15 298-312 69-83 (105)
57 PF06936 Selenoprotein_S: Sele 22.2 3.1E+02 0.0067 25.6 6.7 17 269-285 83-99 (190)
58 COG1422 Predicted membrane pro 22.1 4.2E+02 0.0091 25.2 7.5 25 276-300 97-122 (201)
59 KOG0310 Conserved WD40 repeat- 22.1 3.3E+02 0.0072 29.0 7.5 50 252-301 423-472 (487)
60 PRK13428 F0F1 ATP synthase sub 22.0 6.1E+02 0.013 26.3 9.5 33 280-312 93-125 (445)
61 cd07616 BAR_Endophilin_B1 The 21.8 4.4E+02 0.0095 25.3 7.8 25 256-280 90-114 (229)
62 PRK13455 F0F1 ATP synthase sub 21.8 4.5E+02 0.0097 23.6 7.6 41 271-311 110-150 (184)
63 cd07662 BAR_SNX6 The Bin/Amphi 21.5 5.1E+02 0.011 24.8 8.1 59 255-313 76-147 (218)
64 cd07600 BAR_Gvp36 The Bin/Amph 21.5 5.5E+02 0.012 24.7 8.5 28 256-283 104-131 (242)
65 PF11351 DUF3154: Protein of u 21.4 2.8E+02 0.006 23.8 5.8 35 278-312 18-55 (123)
66 smart00502 BBC B-Box C-termina 20.8 4.3E+02 0.0094 20.9 7.2 39 262-300 46-84 (127)
67 PTZ00491 major vault protein; 20.8 2.3E+02 0.0051 32.2 6.4 46 266-312 665-712 (850)
68 KOG1772 Vacuolar H+-ATPase V1 20.6 5.6E+02 0.012 22.1 9.3 62 251-312 5-85 (108)
69 CHL00019 atpF ATP synthase CF0 20.5 6.3E+02 0.014 22.7 8.3 39 274-312 110-148 (184)
70 cd07666 BAR_SNX7 The Bin/Amphi 20.4 5.2E+02 0.011 24.9 8.1 59 250-312 101-169 (243)
71 smart00586 ZnF_DBF Zinc finger 20.4 73 0.0016 23.6 1.8 38 114-155 9-46 (49)
72 PF11875 DUF3395: Domain of un 20.4 3.5E+02 0.0076 24.0 6.5 40 271-310 11-50 (151)
73 KOG0850 Transcription factor D 20.2 90 0.002 30.3 2.8 23 110-132 160-182 (245)
No 1
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=100.00 E-value=1.1e-31 Score=260.99 Aligned_cols=244 Identities=29% Similarity=0.385 Sum_probs=155.3
Q ss_pred CCCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 019413 61 EDCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTVKKKYKLEKTKIMSGGGS 140 (341)
Q Consensus 61 ~~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdnLKKrYKkEK~k~~sG~~~ 140 (341)
..+|+.+||++||++|++.|..|.+++++.++|++||.++.. .|++||+.|||+||+||+|+||++|.+...+...
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~----~g~~rs~~qck~K~~nl~k~Yk~~k~~~~~~~~~ 129 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAE----LGYPRSPKQCKAKIENLKKKYKKEKAKKEGSGEG 129 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHH----hCCCCCHHHHHHHHHHHHHHHHHHhcccCCCCCC
Confidence 689999999999999999999999999999999999998876 5799999999999999999999999998766789
Q ss_pred CCCcchHHHHHhhC-CCCCCCCcccccccCCCCCCCCCCCCC-CCC---------CCccccccccc-----CCCchhhHH
Q 019413 141 SKWVFFEKLDQLIG-PTAKIPVSAAATASAVRVPVGIPVGVR-NPG---------KNQQERNVFVG-----GQRSSRMEL 204 (341)
Q Consensus 141 s~W~fFd~LD~LLG-~~p~~~~~~~~~~~~~~~P~~~p~~~~-~~~---------~~q~~~~~~~~-----~~~~~~~~~ 204 (341)
++|+||..||.|+. ..+.... ....+.-...|+..++++. ... ......+..+. ......+.+
T Consensus 130 s~~~ff~~le~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 208 (345)
T KOG4282|consen 130 SSWKFFSELEALLITFKARPRS-DEVGPGNASAPLTLSVSSEPQFSSNPTELQFDGSSLEDSSQPSGLNEDNSNSSSPEP 208 (345)
T ss_pred ccchHHHHHHHHHhccCCCCCC-CCCCcccccCccccCCCCCCCCCCCccccccCCCcCCCCCcccccCccccccCCCCC
Confidence 99999999999997 2221100 0000000111111111110 000 00000000000 000000000
Q ss_pred HHhhhccccchhhhhhhccCCCCCCCCccccccccccCCCcCCCCCCchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 019413 205 RKRAAVETEEEEESEEESRDSIDSFPPAKRKRVEGESGKGKEKGGWGDSVKLLTQAILKFGEAYEQAE-SAKLQQVVEME 283 (341)
Q Consensus 205 r~r~~~~~s~~e~e~~~~~~~~ds~pp~~~kr~~~~~~~~~~~~~~~~~~~~la~ai~~fgE~yeR~E-~ak~~~~~elE 283 (341)
.......+.......+++.++.+.. .+.....+.......+.+..++++++++.+|+++|+++| ..++++|.++|
T Consensus 209 ~~~~~~~~~~~s~~~~~s~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~e 284 (345)
T KOG4282|consen 209 VAGSLSNDTSSSSSPDDSADSEGGK----SSSRKRRVRKDGSKEGIEELMREVARSQERLDEVLERVEEKKEQERMSEEE 284 (345)
T ss_pred CCcchhhccccccchhcccccccCC----CCCCCccccccccchhHHHHhhhhhhhHHHHHHHHHHHhccchHhhhhHHH
Confidence 0000000000000001111111000 000000011111233556789999999999999999999 99999999999
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHhhc
Q 019413 284 KQRMKFA---KEMELQRMQFFMKTQLEISQLKH 313 (341)
Q Consensus 284 k~Rme~~---~elE~~R~~~~~~~Q~ei~~~~~ 313 (341)
+.||+++ +|+|++++++++++|++|+.|+.
T Consensus 285 ~~r~~~~~r~ke~e~~~~~~~~~~~~~i~~i~~ 317 (345)
T KOG4282|consen 285 KWRMEEIERNKELELARQERIQETQLEIRSIKA 317 (345)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 99999999999999999998873
No 2
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=99.80 E-value=6.3e-20 Score=145.02 Aligned_cols=85 Identities=33% Similarity=0.705 Sum_probs=55.3
Q ss_pred CCCCHHHHHHHHHHHhhhHHhh--hc-CCcchH-HHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhhccCC
Q 019413 62 DCWSEGATGVLIDAWGERYLEL--SR-GNLKQK-HWKEVADIVSSREDYTKAPKTDIQCKNRIDTVKKKYKLEKTKIMSG 137 (341)
Q Consensus 62 ~~WSe~ET~~LIdaWgdr~~ql--~r-g~lR~k-~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdnLKKrYKkEK~k~~sG 137 (341)
..||++||.+||++|++.+.+. .. +++++. +|++||..|.++ |+.+|+.||++||++|+++||+++.....
T Consensus 2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~----G~~rt~~qc~~Kw~~L~~~Yk~~k~~~~~- 76 (90)
T PF13837_consen 2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEH----GYNRTPEQCRNKWKNLKKKYKKIKDRNKK- 76 (90)
T ss_dssp -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHH----C----HHHHHHHHHHHHHHHHCSSSSSS--
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHHHHHHHHhcCCC-
Confidence 5899999999999999965553 33 577775 899999999984 68899999999999999999999988642
Q ss_pred CCCCCCcchHHHHHh
Q 019413 138 GGSSKWVFFEKLDQL 152 (341)
Q Consensus 138 ~~~s~W~fFd~LD~L 152 (341)
..++|+||+.||.|
T Consensus 77 -~~~~w~~f~~md~i 90 (90)
T PF13837_consen 77 -SGSSWPYFDEMDEI 90 (90)
T ss_dssp ----S---TT-----
T ss_pred -CCCcCcCHHHHhcC
Confidence 22599999999987
No 3
>smart00595 MADF subfamily of SANT domain.
Probab=98.62 E-value=3.4e-08 Score=78.15 Aligned_cols=73 Identities=30% Similarity=0.601 Sum_probs=56.5
Q ss_pred HHHHHhhh-------HHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhhcc----CCCCC
Q 019413 72 LIDAWGER-------YLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTVKKKYKLEKTKIM----SGGGS 140 (341)
Q Consensus 72 LIdaWgdr-------~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdnLKKrYKkEK~k~~----sG~~~ 140 (341)
||+++... .........+...|.+||..|.. |..+|+.||++|+..|+++..+.. .|..+
T Consensus 2 LI~~v~~~p~Lwd~~~~~y~~~~~r~~aW~~Ia~~l~~---------~~~~~~~kw~~LR~~y~~e~~r~~~~~~~~~~~ 72 (89)
T smart00595 2 LIELVRERPCLWDRRHPDYRNKEEKRKAWEEIAEELGL---------SVEECKKRWKNLRDRYRRELKRLQNGKSGGGKK 72 (89)
T ss_pred hHHHHHhCccccCCCChhhcChHHHHHHHHHHHHHHCc---------CHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Confidence 67776654 23334455667789999999953 899999999999999999987753 22247
Q ss_pred CCCcchHHHHHhh
Q 019413 141 SKWVFFEKLDQLI 153 (341)
Q Consensus 141 s~W~fFd~LD~LL 153 (341)
+.|.||+.|..|.
T Consensus 73 ~~w~~~~~m~FL~ 85 (89)
T smart00595 73 SKWEYFDRLSFLR 85 (89)
T ss_pred CCchhhHhhhhHH
Confidence 9999999998874
No 4
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=98.58 E-value=3e-07 Score=73.46 Aligned_cols=70 Identities=27% Similarity=0.397 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHHHHhhhHHhhh---cCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhhcc
Q 019413 63 CWSEGATGVLIDAWGERYLELS---RGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTVKKKYKLEKTKIM 135 (341)
Q Consensus 63 ~WSe~ET~~LIdaWgdr~~ql~---rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdnLKKrYKkEK~k~~ 135 (341)
.||+..+..||++.-+....-+ .+.++...|..|+.+|+++ .+..+|..||++|++.||+.|+..+.-..
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~---~~~~~t~~qlknk~~~lk~~y~~~~~l~~ 73 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEK---TGLNYTKKQLKNKWKTLKKDYRIWKELRN 73 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHH---hCCcccHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5999999999999988755533 4668888999999999996 45779999999999999999999887753
No 5
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=98.48 E-value=9.5e-08 Score=73.71 Aligned_cols=74 Identities=24% Similarity=0.472 Sum_probs=56.6
Q ss_pred HHHHHhhh-------HHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhhcc----CCCCC
Q 019413 72 LIDAWGER-------YLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTVKKKYKLEKTKIM----SGGGS 140 (341)
Q Consensus 72 LIdaWgdr-------~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdnLKKrYKkEK~k~~----sG~~~ 140 (341)
||+++... ........++...|++||..|... .+..+|+.||.+|+..|++++.+.. .....
T Consensus 1 LI~~v~~~p~Lwd~~~~~y~~~~~r~~aw~~Ia~~l~~~-------~~~~~~~~~w~~Lr~~y~~~~~~~~~~~~~~~~~ 73 (85)
T PF10545_consen 1 LIELVKKHPCLWDPSHPDYKNRQLREEAWQEIARELGKE-------FSVDDCKKRWKNLRDRYRRELKKIKSSGGSEEYV 73 (85)
T ss_pred CHHHHhhCHHhhCCCCcccCCHHHHHHHHHHHHHHHccc-------hhHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC
Confidence 45555553 333344456778899999999642 4688999999999999999998875 34578
Q ss_pred CCCcchHHHHHh
Q 019413 141 SKWVFFEKLDQL 152 (341)
Q Consensus 141 s~W~fFd~LD~L 152 (341)
++|.||+.|..|
T Consensus 74 ~~~~~~~~l~FL 85 (85)
T PF10545_consen 74 PTWSYYEELSFL 85 (85)
T ss_pred CccHHHHHCcCC
Confidence 999999999765
No 6
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=98.30 E-value=3.4e-06 Score=65.61 Aligned_cols=70 Identities=21% Similarity=0.256 Sum_probs=55.6
Q ss_pred CCCCCCHHHHHHHHHHHhhhHHhhhc-C------CcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 019413 60 REDCWSEGATGVLIDAWGERYLELSR-G------NLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTVKKKYKLEKT 132 (341)
Q Consensus 60 R~~~WSe~ET~~LIdaWgdr~~ql~r-g------~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdnLKKrYKkEK~ 132 (341)
|...||.+|+.+||+....+..-+.. . ..+...|++|+..|++. + +..||..|||.||++||..=|+...
T Consensus 1 R~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~-~--~~~Rs~~~lkkkW~nlk~~~Kk~~~ 77 (78)
T PF13873_consen 1 RKPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNAL-G--PGKRSWKQLKKKWKNLKSKAKKKLA 77 (78)
T ss_pred CCCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhc-C--CCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 56799999999999998886555432 1 13456899999999995 2 2389999999999999999887643
No 7
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=97.60 E-value=0.00011 Score=52.54 Aligned_cols=47 Identities=23% Similarity=0.478 Sum_probs=36.6
Q ss_pred CCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHH
Q 019413 62 DCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTVK 124 (341)
Q Consensus 62 ~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdnLK 124 (341)
..||.+|...|+++....-.. .|..||..|. ..||..||++++.+|+
T Consensus 2 ~~Wt~eE~~~l~~~v~~~g~~---------~W~~Ia~~~~-------~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKKYGKD---------NWKKIAKRMP-------GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp -SS-HHHHHHHHHHHHHSTTT---------HHHHHHHHHS-------SSSTHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhCCc---------HHHHHHHHcC-------CCCCHHHHHHHHHhhC
Confidence 379999999999987643211 7999999995 2489999999998874
No 8
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=97.12 E-value=0.00076 Score=49.82 Aligned_cols=43 Identities=28% Similarity=0.686 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH-HH
Q 019413 64 WSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDT-VK 124 (341)
Q Consensus 64 WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdn-LK 124 (341)
||++|...|+.++... |+ .|..||..|. .||..||++|+.+ |+
T Consensus 1 WT~eEd~~L~~~~~~~------g~----~W~~Ia~~l~--------~Rt~~~~~~r~~~~l~ 44 (60)
T PF13921_consen 1 WTKEEDELLLELVKKY------GN----DWKKIAEHLG--------NRTPKQCRNRWRNHLR 44 (60)
T ss_dssp S-HHHHHHHHHHHHHH------TS-----HHHHHHHST--------TS-HHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHH------Cc----CHHHHHHHHC--------cCCHHHHHHHHHHHCc
Confidence 9999999999998874 21 6999999884 3899999999998 64
No 9
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=97.03 E-value=0.00078 Score=46.00 Aligned_cols=47 Identities=23% Similarity=0.474 Sum_probs=38.2
Q ss_pred CCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHH
Q 019413 62 DCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTVKK 125 (341)
Q Consensus 62 ~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdnLKK 125 (341)
..||.+|...|+.+....-. ..|..||..|. .||..||+.++.+|.+
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~---------~~w~~Ia~~~~--------~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGK---------NNWEKIAKELP--------GRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCc---------CCHHHHHHHcC--------CCCHHHHHHHHHHHcC
Confidence 47999999999998664321 47999999885 4899999999988764
No 10
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=96.79 E-value=0.0018 Score=43.62 Aligned_cols=45 Identities=22% Similarity=0.485 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHH
Q 019413 63 CWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTVK 124 (341)
Q Consensus 63 ~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdnLK 124 (341)
.||.+|...|+.+....-. ..|..||..|.. ||..||+.++.+++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~---------~~w~~Ia~~~~~--------rs~~~~~~~~~~~~ 45 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGK---------NNWEKIAKELPG--------RTPKQCRERWRNLL 45 (45)
T ss_pred CCCHHHHHHHHHHHHHHCc---------CCHHHHHhHcCC--------CCHHHHHHHHHHhC
Confidence 4999999999988775421 469999998843 89999999998763
No 11
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=95.87 E-value=0.055 Score=44.86 Aligned_cols=70 Identities=23% Similarity=0.255 Sum_probs=54.1
Q ss_pred CCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhhccCC
Q 019413 63 CWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTVKKKYKLEKTKIMSG 137 (341)
Q Consensus 63 ~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdnLKKrYKkEK~k~~sG 137 (341)
.||++.-.+||+..-+..... |..-..+|..+.+.|...+. ...|..|...||..||++|.....+...|
T Consensus 6 ~WS~eDEi~iL~gl~~~~~~~--G~~p~~d~~~f~~~vk~~l~---~~~s~~Ql~~KirrLK~Ky~~~~~k~~~g 75 (98)
T PF04504_consen 6 LWSEEDEIVILQGLIDFRAKT--GKSPQPDMNAFYDFVKGSLS---FDVSKNQLYDKIRRLKKKYRNAVKKSKNG 75 (98)
T ss_pred CCCchHHHHHHHHHHHHHHhc--CCCCCccHHHHHHHHHHHcc---CCCCHHHHHHHHHHHHHHHHHHhhhcccC
Confidence 699999999999887764443 33333478888888877543 56789999999999999999988774444
No 12
>PLN03212 Transcription repressor MYB5; Provisional
Probab=95.24 E-value=0.045 Score=52.62 Aligned_cols=52 Identities=19% Similarity=0.273 Sum_probs=39.4
Q ss_pred CCCCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHHH
Q 019413 60 REDCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTVKKKYKL 129 (341)
Q Consensus 60 R~~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdnLKKrYKk 129 (341)
+...||.+|-..||+++.. -| ..|..||..|. .||+.||||+|.++.+++.+
T Consensus 77 ~kgpWT~EED~lLlel~~~------~G----nKWs~IAk~Lp--------GRTDnqIKNRWns~LrK~l~ 128 (249)
T PLN03212 77 KRGGITSDEEDLILRLHRL------LG----NRWSLIAGRIP--------GRTDNEIKNYWNTHLRKKLL 128 (249)
T ss_pred ccCCCChHHHHHHHHHHHh------cc----ccHHHHHhhcC--------CCCHHHHHHHHHHHHhHHHH
Confidence 3468999999999987432 22 25999999883 48999999999987665533
No 13
>PLN03091 hypothetical protein; Provisional
Probab=95.16 E-value=0.044 Score=56.46 Aligned_cols=52 Identities=21% Similarity=0.350 Sum_probs=41.8
Q ss_pred CCCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 019413 61 EDCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTVKKKYKLE 130 (341)
Q Consensus 61 ~~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdnLKKrYKkE 130 (341)
...||.+|-..||+.+.. -| ..|..||..|. .||+.||||+|..+-++|.+.
T Consensus 67 KgpWT~EED~lLLeL~k~------~G----nKWskIAk~LP--------GRTDnqIKNRWnslLKKklr~ 118 (459)
T PLN03091 67 RGTFSQQEENLIIELHAV------LG----NRWSQIAAQLP--------GRTDNEIKNLWNSCLKKKLRQ 118 (459)
T ss_pred CCCCCHHHHHHHHHHHHH------hC----cchHHHHHhcC--------CCCHHHHHHHHHHHHHHHHHH
Confidence 458999999999988753 13 36999999883 489999999999987777653
No 14
>PLN03212 Transcription repressor MYB5; Provisional
Probab=93.92 E-value=0.091 Score=50.57 Aligned_cols=47 Identities=13% Similarity=0.381 Sum_probs=34.8
Q ss_pred CCCCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 019413 60 REDCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDT 122 (341)
Q Consensus 60 R~~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdn 122 (341)
+...||.+|-..|+.+-... | ...|.+||..|. ..||+.|||.||.+
T Consensus 24 KRg~WT~EEDe~L~~lV~ky------G---~~nW~~IAk~~g-------~gRT~KQCReRW~N 70 (249)
T PLN03212 24 KRGPWTVEEDEILVSFIKKE------G---EGRWRSLPKRAG-------LLRCGKSCRLRWMN 70 (249)
T ss_pred cCCCCCHHHHHHHHHHHHHh------C---cccHHHHHHhhh-------cCCCcchHHHHHHH
Confidence 45589999999998753321 2 135999998763 35899999999974
No 15
>PLN03091 hypothetical protein; Provisional
Probab=91.59 E-value=0.25 Score=51.15 Aligned_cols=47 Identities=19% Similarity=0.369 Sum_probs=35.5
Q ss_pred CCCCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 019413 60 REDCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDT 122 (341)
Q Consensus 60 R~~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdn 122 (341)
+...||.+|-..|+.+-... |. ..|..||..|. ..||+.|||.||.+
T Consensus 13 rKg~WTpEEDe~L~~~V~ky------G~---~nWs~IAk~~g-------~gRT~KQCRERW~N 59 (459)
T PLN03091 13 RKGLWSPEEDEKLLRHITKY------GH---GCWSSVPKQAG-------LQRCGKSCRLRWIN 59 (459)
T ss_pred cCCCCCHHHHHHHHHHHHHh------Cc---CCHHHHhhhhc-------cCcCcchHhHHHHh
Confidence 45589999999998776421 21 36999997652 45899999999874
No 16
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=91.27 E-value=0.28 Score=51.02 Aligned_cols=46 Identities=26% Similarity=0.422 Sum_probs=36.9
Q ss_pred CCCCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Q 019413 60 REDCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTV 123 (341)
Q Consensus 60 R~~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdnL 123 (341)
+...||.+|+.+||+.-... ..+|..||.+|.. ||.+||=-|+=.|
T Consensus 278 ~dk~WS~qE~~LLLEGIe~y----------gDdW~kVA~HVgt--------Kt~EqCIl~FL~L 323 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMY----------GDDWDKVARHVGT--------KTKEQCILHFLQL 323 (531)
T ss_pred ccccccHHHHHHHHHHHHHh----------hhhHHHHHHHhCC--------CCHHHHHHHHHcC
Confidence 55699999999999864321 2489999999964 8999999988766
No 17
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=88.64 E-value=0.51 Score=49.72 Aligned_cols=49 Identities=29% Similarity=0.477 Sum_probs=38.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Q 019413 57 GGGREDCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTV 123 (341)
Q Consensus 57 g~~R~~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdnL 123 (341)
|..-+..||++||..||++-.. ...+|..||.+|.. ||..||=-|+-.|
T Consensus 249 ~~~~~~~WT~qE~lLLLE~ie~----------y~ddW~kVa~hVg~--------ks~eqCI~kFL~L 297 (506)
T KOG1279|consen 249 GESARPNWTEQETLLLLEAIEM----------YGDDWNKVADHVGT--------KSQEQCILKFLRL 297 (506)
T ss_pred cccCCCCccHHHHHHHHHHHHH----------hcccHHHHHhccCC--------CCHHHHHHHHHhc
Confidence 4445578999999999987432 23589999999963 8999999988765
No 18
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=81.15 E-value=2.2 Score=45.87 Aligned_cols=66 Identities=18% Similarity=0.388 Sum_probs=48.6
Q ss_pred CCCCCCHHHHHHHHHHHhhhHH---hhh------------cCCcchHH-HHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Q 019413 60 REDCWSEGATGVLIDAWGERYL---ELS------------RGNLKQKH-WKEVADIVSSREDYTKAPKTDIQCKNRIDTV 123 (341)
Q Consensus 60 R~~~WSe~ET~~LIdaWgdr~~---ql~------------rg~lR~k~-W~eVA~~vs~r~g~~g~~rT~~QCRnKIdnL 123 (341)
+...||-+|...||++..+.+. |.. .+.|+..+ |-.|++.|-. |+..|||.||-.|
T Consensus 435 ~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~T--------R~~~qCr~Kw~kl 506 (607)
T KOG0051|consen 435 NRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSEMLGT--------RSRIQCRYKWYKL 506 (607)
T ss_pred ccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhHhhcC--------CCcchHHHHHHHH
Confidence 5679999999999999987544 231 12233333 9999994433 7899999999999
Q ss_pred HHHHHHHhhh
Q 019413 124 KKKYKLEKTK 133 (341)
Q Consensus 124 KKrYKkEK~k 133 (341)
-.+|=.-+..
T Consensus 507 ~~~~s~n~~~ 516 (607)
T KOG0051|consen 507 TTSPSFNKRQ 516 (607)
T ss_pred HhhHHhhccc
Confidence 9888765544
No 19
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=81.05 E-value=4.3 Score=38.30 Aligned_cols=53 Identities=26% Similarity=0.352 Sum_probs=41.4
Q ss_pred CCCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH-HHHHHHHHh
Q 019413 61 EDCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDT-VKKKYKLEK 131 (341)
Q Consensus 61 ~~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdn-LKKrYKkEK 131 (341)
...||++|..+||.+.... ||. |..||..| +.||+..+||=|-+ |||++++..
T Consensus 62 rg~fT~eEe~~Ii~lH~~~------GNr----Ws~IA~~L--------PGRTDNeIKN~Wnt~lkkkl~~~~ 115 (238)
T KOG0048|consen 62 RGNFSDEEEDLIIKLHALL------GNR----WSLIAGRL--------PGRTDNEVKNHWNTHLKKKLLKMG 115 (238)
T ss_pred CCCCCHHHHHHHHHHHHHH------CcH----HHHHHhhC--------CCcCHHHHHHHHHHHHHHHHHHcC
Confidence 4589999999999886532 222 99999988 56999999998865 577777755
No 20
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=81.03 E-value=4.1 Score=37.07 Aligned_cols=61 Identities=23% Similarity=0.434 Sum_probs=45.5
Q ss_pred CCCCCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH-HHHHHHHHh
Q 019413 59 GREDCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDT-VKKKYKLEK 131 (341)
Q Consensus 59 ~R~~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdn-LKKrYKkEK 131 (341)
.|-+.||+++-..|-++-- +|+ ..|.---..|+||++.++ ||+-=|.-||.+ ++|+|..+-
T Consensus 2 ~RQDAWT~eeDlLLAEtVL-rhI--ReG~TQL~AFeEvg~~L~---------RTsAACGFRWNs~VRkqY~~~i 63 (161)
T TIGR02894 2 TRQDAWTHEEDLLLAETVL-RHI--REGSTQLSAFEEVGRALN---------RTAAACGFRWNAYVRKQYEEAI 63 (161)
T ss_pred ccccccccHHHHHHHHHHH-HHH--hcchHHHHHHHHHHHHHc---------ccHHHhcchHHHHHHHHHHHHH
Confidence 3668999999998877643 233 345444467999999886 699999999986 677898763
No 21
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=80.81 E-value=5.3 Score=36.68 Aligned_cols=61 Identities=26% Similarity=0.523 Sum_probs=44.4
Q ss_pred CCCCCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHH-HHHHHHHHHHh
Q 019413 59 GREDCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRI-DTVKKKYKLEK 131 (341)
Q Consensus 59 ~R~~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKI-dnLKKrYKkEK 131 (341)
.|-++||.++-..|-++.-+. ...|...-..+++|+..|+ +|..+|.-+| -.++|+|..+-
T Consensus 3 ~rqdawt~e~d~llae~vl~~---i~eg~tql~afe~~g~~L~---------rt~aac~fRwNs~vrk~Yee~I 64 (170)
T PRK13923 3 TRQDAWTQERDGLLAEVVLRH---IREGGTQLKAFEEVGDALK---------RTAAACGFRWNSVVRKQYQEQI 64 (170)
T ss_pred chhhhhhhHHHHHHHHHHHHH---HhccchHHHHHHHHHHHHh---------hhHHHHHhHHHHHHHHHHHHHH
Confidence 366899999999885544332 2356666677888988886 5899999999 55777887643
No 22
>PF03353 Lin-8: Ras-mediated vulval-induction antagonist; InterPro: IPR005020 This is a family of Caenorhabditis elegans proteins of unknown function.
Probab=77.11 E-value=6.2 Score=38.51 Aligned_cols=82 Identities=15% Similarity=0.184 Sum_probs=52.7
Q ss_pred CCCHHHHHHHHHHHhhh---HHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhh-c-cC-
Q 019413 63 CWSEGATGVLIDAWGER---YLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTVKKKYKLEKTK-I-MS- 136 (341)
Q Consensus 63 ~WSe~ET~~LIdaWgdr---~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdnLKKrYKkEK~k-~-~s- 136 (341)
.|...-..++|.+-++. |- ..+......|.+||-.|-.|. |...+...|+.=|++-|+..|+.-.. + ..
T Consensus 19 ~~~~~~kk~il~~i~~~p~lw~--~~~~~~~~~~~~v~v~vy~Rt---g~~~~~~~i~~~~~~aK~~Lr~~l~~~I~~~~ 93 (313)
T PF03353_consen 19 KKDVELKKVILSEIEKFPELWK--KKSRVPNEEWEEVAVEVYKRT---GKLVSVKHIRSIFKNAKDSLRRRLRKCIKKKK 93 (313)
T ss_pred hhhHHHHHHHHHHHhcChHhhh--ccCCccHHHHHHHHHHHHHHH---hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45444445555555442 33 455556789999999999984 45688889998888888777752221 1 01
Q ss_pred ------CCCCCCCcchHHH
Q 019413 137 ------GGGSSKWVFFEKL 149 (341)
Q Consensus 137 ------G~~~s~W~fFd~L 149 (341)
-.....|+||..|
T Consensus 94 l~~~~~E~~L~~W~~Y~~~ 112 (313)
T PF03353_consen 94 LSPEETEEKLWKWELYPFI 112 (313)
T ss_pred CCHHHHHHHHHcCCccchh
Confidence 1245679888655
No 23
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=69.26 E-value=17 Score=38.19 Aligned_cols=55 Identities=25% Similarity=0.325 Sum_probs=41.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019413 252 DSVKLLTQAILKFGEAYEQAESAKLQQVVEMEKQRMKFAKEMELQRMQFFMKTQLEISQLKHG 314 (341)
Q Consensus 252 ~~~~~la~ai~~fgE~yeR~E~ak~~~~~elEk~Rme~~~elE~~R~~~~~~~Q~ei~~~~~~ 314 (341)
+++.||-.-|+.|-- =||.-|-+|-+|||+.|- |||..++ |-.+.||||.+|+..
T Consensus 569 ~s~delr~qi~el~~---ive~lk~~~~kel~kl~~----dleeek~-mr~~lemei~~lkka 623 (627)
T KOG4348|consen 569 NSLDELRAQIIELLC---IVEALKKDHGKELEKLRK----DLEEEKT-MRSNLEMEIEKLKKA 623 (627)
T ss_pred hhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH----HHHHHHH-HHhhhHhhHHHHHHH
Confidence 567777666554443 567889999999999998 5776654 446899999999864
No 24
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=65.16 E-value=12 Score=40.99 Aligned_cols=56 Identities=16% Similarity=0.215 Sum_probs=41.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHH
Q 019413 57 GGGREDCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTVKKKYK 128 (341)
Q Consensus 57 g~~R~~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdnLKKrYK 128 (341)
-..+.+.||.+|...|+.+=.. -+...|+.||..+ |..|+.-||-.|+++=-+..+
T Consensus 249 P~~nk~~WS~EE~E~L~AiA~A---------~~~~~W~~IA~~L-------gt~RS~yQC~~kF~t~~~~L~ 304 (939)
T KOG0049|consen 249 PKWNKEHWSNEEVEKLKALAEA---------PKFVSWPMIALNL-------GTNRSSYQCMEKFKTEVSQLS 304 (939)
T ss_pred CccchhccChHHHHHHHHHHhc---------cccccHHHHHHHh-------CCCcchHHHHHHHHHHHHHHH
Confidence 4567889999999998765332 1223699999987 356899999999988555443
No 25
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=63.95 E-value=11 Score=39.34 Aligned_cols=60 Identities=20% Similarity=0.400 Sum_probs=41.4
Q ss_pred ccccccccccccccCCCCCCCCCCCCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHH
Q 019413 38 PQQQQQNVALALPSQRNGGGGGREDCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCK 117 (341)
Q Consensus 38 ~~~~~~~~~~a~~~~~~ggg~~R~~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCR 117 (341)
+-+-+|.|.+.-+.+..- -...||..|-..||++-. .++-| -|++||+.|-. ||..+|+
T Consensus 53 ~H~~~H~Yrim~~~s~~i----~~~~WtadEEilLLea~~----t~G~G-----NW~dIA~hIGt--------Ktkeeck 111 (438)
T KOG0457|consen 53 KHQNDHPYRIMDTNSFPI----LDPSWTADEEILLLEAAE----TYGFG-----NWQDIADHIGT--------KTKEECK 111 (438)
T ss_pred CCCCCCCceeecCCCCCC----CCCCCChHHHHHHHHHHH----HhCCC-----cHHHHHHHHcc--------cchHHHH
Confidence 334457777775432211 125899999999999843 34445 59999999964 7999997
Q ss_pred H
Q 019413 118 N 118 (341)
Q Consensus 118 n 118 (341)
.
T Consensus 112 ~ 112 (438)
T KOG0457|consen 112 E 112 (438)
T ss_pred H
Confidence 5
No 26
>PF15444 TMEM247: Transmembrane protein 247
Probab=62.86 E-value=11 Score=35.33 Aligned_cols=32 Identities=31% Similarity=0.403 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHH--------HHHHHH--HHHHHHHHHHHHH
Q 019413 278 QVVEMEKQRMKFA--------KEMELQ--RMQFFMKTQLEIS 309 (341)
Q Consensus 278 ~~~elEk~Rme~~--------~elE~~--R~~~~~~~Q~ei~ 309 (341)
..+||||.||||. .|=|-| +-+.+.+-|++-+
T Consensus 102 ~emELEKvRMEFELTrLKyLHeENERQRQHEevMeQLqqQa~ 143 (218)
T PF15444_consen 102 TEMELEKVRMEFELTRLKYLHEENERQRQHEEVMEQLQQQAA 143 (218)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhc
Confidence 3468999999984 344444 4455555555443
No 27
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=57.02 E-value=31 Score=25.99 Aligned_cols=46 Identities=17% Similarity=0.350 Sum_probs=33.1
Q ss_pred CCCCCHHHHHHHHHHHhhhHHhhhcCCcchHHH---HHHHHHHHhccCCCCCCCCHHHHHHHHH
Q 019413 61 EDCWSEGATGVLIDAWGERYLELSRGNLKQKHW---KEVADIVSSREDYTKAPKTDIQCKNRID 121 (341)
Q Consensus 61 ~~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W---~eVA~~vs~r~g~~g~~rT~~QCRnKId 121 (341)
+..||+++-..+|++... ++.| +| ..|++.|.. ...|..||+.-..
T Consensus 3 r~~WT~eeh~~Fl~ai~~----~G~g-----~~a~pk~I~~~~~~------~~lT~~qV~SH~Q 51 (57)
T TIGR01557 3 RVVWTEDLHDRFLQAVQK----LGGP-----DWATPKRILELMVV------DGLTRDQVASHLQ 51 (57)
T ss_pred CCCCCHHHHHHHHHHHHH----hCCC-----cccchHHHHHHcCC------CCCCHHHHHHHHH
Confidence 468999999999998653 3444 57 788887753 2249999987653
No 28
>COG1422 Predicted membrane protein [Function unknown]
Probab=50.09 E-value=1.1e+02 Score=28.89 Aligned_cols=49 Identities=16% Similarity=0.260 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHh
Q 019413 261 ILKFGEAYEQAESAKLQQVVEMEKQRMKFA--------KEMELQRMQFFMKTQLEISQL 311 (341)
Q Consensus 261 i~~fgE~yeR~E~ak~~~~~elEk~Rme~~--------~elE~~R~~~~~~~Q~ei~~~ 311 (341)
+++|-=-+||++.-| ++|+|+.+...|+. +.|+.+||||+ +-|.|+-|.
T Consensus 64 ~~~~liD~ekm~~~q-k~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~-~~Q~elmk~ 120 (201)
T COG1422 64 LQKLLIDQEKMKELQ-KMMKEFQKEFREAQESGDMKKLKKLQEKQMEMM-DDQRELMKM 120 (201)
T ss_pred HHHHhccHHHHHHHH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 344555567766543 56667666666653 67888888885 668887765
No 29
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=49.25 E-value=20 Score=40.23 Aligned_cols=17 Identities=24% Similarity=0.296 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHHHHHH
Q 019413 253 SVKLLTQAILKFGEAYE 269 (341)
Q Consensus 253 ~~~~la~ai~~fgE~ye 269 (341)
++.|.-.-|+-|..+|.
T Consensus 974 smEEFFaDi~tFrnaf~ 990 (1102)
T KOG1924|consen 974 SMEEFFADIRTFRNAFL 990 (1102)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 44555556666655554
No 30
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=46.20 E-value=41 Score=36.70 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019413 281 EMEKQRMKFAKEMELQRMQFFMKT 304 (341)
Q Consensus 281 elEk~Rme~~~elE~~R~~~~~~~ 304 (341)
.||+.|||.. -||++||.++..-
T Consensus 664 rLERErmErE-RLEreRM~ve~eR 686 (940)
T KOG4661|consen 664 RLERERMERE-RLERERMKVEEER 686 (940)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHhh
Confidence 3455555433 4788888877654
No 31
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=45.88 E-value=87 Score=32.93 Aligned_cols=55 Identities=20% Similarity=0.194 Sum_probs=44.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019413 250 WGDSVKLLTQAILKFGEAYEQAESAKLQQVVE-----MEKQRMKFAKEMELQRMQFFMKTQLE 307 (341)
Q Consensus 250 ~~~~~~~la~ai~~fgE~yeR~E~ak~~~~~e-----lEk~Rme~~~elE~~R~~~~~~~Q~e 307 (341)
++.=|..-|+-.++=+|.|-||-.||-+++.| +=|.|+. |.|.+|.+.|++.|+.
T Consensus 365 EA~MFQ~kAdEARrEAE~LqrI~~aK~~k~EEEYas~~~kl~l~---eaee~r~~~~eelk~~ 424 (446)
T PF07227_consen 365 EAKMFQLKADEARREAEGLQRIALAKSEKIEEEYASRYLKLRLN---EAEEERKKKFEELKVL 424 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhH---HHHHHHHHHHHHHHHH
Confidence 34456677888899999999999999988763 4566665 9999999999988875
No 32
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=41.18 E-value=23 Score=33.42 Aligned_cols=44 Identities=9% Similarity=0.245 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHHHHHhhhHHhh-hcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 019413 62 DCWSEGATGVLIDAWGERYLEL-SRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDT 122 (341)
Q Consensus 62 ~~WSe~ET~~LIdaWgdr~~ql-~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdn 122 (341)
..||.+|-..|++. ++. +-+ -|.-|++.+- ..|++++||-||-|
T Consensus 10 GpWt~EED~~L~~~-----V~~~G~~-----~W~~i~k~~g-------l~R~GKSCRlRW~N 54 (238)
T KOG0048|consen 10 GPWTQEEDLTQIRS-----IKSFGKH-----NGTALPKLAG-------LRRCGKSCRLRWTN 54 (238)
T ss_pred CCCChHHHHHHHHH-----HHHhCCC-----CcchhhhhcC-------CCccchHHHHHhhc
Confidence 48999999999863 332 122 5888887653 35899999999975
No 33
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=40.69 E-value=1.4e+02 Score=29.58 Aligned_cols=50 Identities=20% Similarity=0.136 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 019413 258 TQAILKFGEAYEQAESAKLQQVVEMEKQRMKF-AKEMELQRMQFFMKTQLE 307 (341)
Q Consensus 258 a~ai~~fgE~yeR~E~ak~~~~~elEk~Rme~-~~elE~~R~~~~~~~Q~e 307 (341)
.+.++.-.|.+.|.|+.+++.-.+|..+|+.- ..|+||+|--++.++..|
T Consensus 132 ~e~lk~QEes~~rqE~~Rr~Te~~i~~~r~~t~~~eaeL~~e~~~~k~~AE 182 (276)
T PF12037_consen 132 EELLKMQEESVIRQEQMRRATEEQILAQRRQTEEEEAELRRETERAKAEAE 182 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34677788999999999999988888777665 478888888777777776
No 34
>PF04687 Microvir_H: Microvirus H protein (pilot protein); InterPro: IPR006777 Bacteriophage PhiX174 is one of the simplest viruses, having a single-stranded, closed circular DNA of 5386 nucleotide bases and four capsid proteins, J, F, G and H. A single molecule of H protein is found on each of the 12 spikes on the microvirus shell of the bacteriophage. H is involved in the ejection of the phage DNA, and at least one copy is injected into the hosts periplasmic space along with the ssDNA viral genome []. Part of H is thought to lie outside the shell, where it recognises lipopolysaccharide from virus-sensitive bacterial strains []. Part of H may lie within the capsid, since mutations in H can influence the DNA ejection mechanism by affecting the DNA-protein interactions []. H may span the capsid through the hydrophilic channels formed by G proteins [].; GO: 0016032 viral reproduction, 0019028 viral capsid
Probab=37.69 E-value=32 Score=33.40 Aligned_cols=39 Identities=26% Similarity=0.332 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019413 271 AESAKLQQVVEMEKQRMKFAKEMELQRMQFFMKTQLEISQLKH 313 (341)
Q Consensus 271 ~E~ak~~~~~elEk~Rme~~~elE~~R~~~~~~~Q~ei~~~~~ 313 (341)
||.+-.++-+||-||-++-+||+- .|-+++|+||+-|..
T Consensus 126 m~~ag~~~qkel~kmqldnqkeia----kmq~~~~~~iagiqs 164 (310)
T PF04687_consen 126 MEDAGFQNQKELTKMQLDNQKEIA----KMQNETQKQIAGIQS 164 (310)
T ss_pred ccccchhhHHHHHHHhhhhHHHHH----HHHhhhhhhhhhhhh
Confidence 577888888999888888777763 344589999998864
No 35
>PHA00369 H minor spike protein
Probab=37.32 E-value=36 Score=33.16 Aligned_cols=39 Identities=28% Similarity=0.388 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019413 271 AESAKLQQVVEMEKQRMKFAKEMELQRMQFFMKTQLEISQLKH 313 (341)
Q Consensus 271 ~E~ak~~~~~elEk~Rme~~~elE~~R~~~~~~~Q~ei~~~~~ 313 (341)
||.+-.++.+||-||-++-+||+- +|| +++|++|+-|..
T Consensus 142 m~~ag~~~QKEl~kMQLDnQKeIA--kMQ--~~~~~~IAGiQS 180 (325)
T PHA00369 142 MEDAGFNNQKELTKMQLDNQKEIA--KMQ--NDTQKQIAGIQS 180 (325)
T ss_pred chhhhhhhHHHHHHHhhccHHHHH--HHh--hhhhhhhhhhhh
Confidence 688888999999988888777763 344 589999998864
No 36
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=33.04 E-value=32 Score=35.50 Aligned_cols=39 Identities=15% Similarity=0.152 Sum_probs=24.0
Q ss_pred HHHHHHHhccCCCCCCCCHHHHHH-HHHHHHHHHHHHhhh
Q 019413 95 EVADIVSSREDYTKAPKTDIQCKN-RIDTVKKKYKLEKTK 133 (341)
Q Consensus 95 eVA~~vs~r~g~~g~~rT~~QCRn-KIdnLKKrYKkEK~k 133 (341)
.||..|++-.+.+..-.|-.+|.. -+-.|+|+||.+--+
T Consensus 239 RIA~RLKdsQNt~A~LTTFNEvDMS~lm~mRk~ykdaf~k 278 (457)
T KOG0559|consen 239 RIAERLKDSQNTAAMLTTFNEVDMSNLMEMRKQYKDAFLK 278 (457)
T ss_pred HHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 477777765433333455666653 456789999986544
No 37
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=32.82 E-value=2.1e+02 Score=30.44 Aligned_cols=24 Identities=17% Similarity=0.176 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019413 254 VKLLTQAILKFGEAYEQAESAKLQ 277 (341)
Q Consensus 254 ~~~la~ai~~fgE~yeR~E~ak~~ 277 (341)
+..|-.|=+.|-++-+|+|.|+++
T Consensus 251 le~Lq~aEqsl~dlQk~Lekar~e 274 (575)
T KOG4403|consen 251 LEGLQRAEQSLEDLQKRLEKAREE 274 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555556666666665555
No 38
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=31.24 E-value=71 Score=36.16 Aligned_cols=41 Identities=15% Similarity=0.190 Sum_probs=20.1
Q ss_pred CCCCCCCHHHHHHHHHHHhh-hHHhhhcCCcchH-HHHHHHHHHHh
Q 019413 59 GREDCWSEGATGVLIDAWGE-RYLELSRGNLKQK-HWKEVADIVSS 102 (341)
Q Consensus 59 ~R~~~WSe~ET~~LIdaWgd-r~~ql~rg~lR~k-~W~eVA~~vs~ 102 (341)
=|+.+|+.=.-.-| =.+ .|+..+...+-+. .+.+.+-+++.
T Consensus 626 Mrr~nW~kI~p~d~---s~~cFWvkv~Edk~en~dlfakL~~~Fat 668 (1102)
T KOG1924|consen 626 MRRFNWSKIVPRDL---SENCFWVKVNEDKLENDDLFAKLALKFAT 668 (1102)
T ss_pred cccCCccccCcccc---CccceeeecchhhccchHHHHHHHHHhhc
Confidence 36678886221111 111 3555555555543 36666666654
No 39
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=30.98 E-value=1.9e+02 Score=20.39 Aligned_cols=54 Identities=20% Similarity=0.214 Sum_probs=40.7
Q ss_pred CCCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHHH
Q 019413 61 EDCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTVKKKYKL 129 (341)
Q Consensus 61 ~~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdnLKKrYKk 129 (341)
...+|...+..|-..|.. ........-++||..+. .|..|.++.+.|=+.+||+
T Consensus 4 r~~~t~~q~~~L~~~f~~------~~~p~~~~~~~la~~l~---------l~~~~V~~WF~nrR~k~kk 57 (57)
T PF00046_consen 4 RTRFTKEQLKVLEEYFQE------NPYPSKEEREELAKELG---------LTERQVKNWFQNRRRKEKK 57 (57)
T ss_dssp SSSSSHHHHHHHHHHHHH------SSSCHHHHHHHHHHHHT---------SSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH------hcccccccccccccccc---------ccccccccCHHHhHHHhCc
Confidence 357888888888888873 23344455667777662 6899999999999999985
No 40
>PF06576 DUF1133: Protein of unknown function (DUF1133); InterPro: IPR010557 This family consists of a number of hypothetical proteins from Escherichia coli O157:H7 and Salmonella typhi. The function of this family is unknown.
Probab=30.82 E-value=77 Score=29.38 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=21.9
Q ss_pred HHHHHHHhccCCCCCCCCHHHHHHHHHHHHH
Q 019413 95 EVADIVSSREDYTKAPKTDIQCKNRIDTVKK 125 (341)
Q Consensus 95 eVA~~vs~r~g~~g~~rT~~QCRnKIdnLKK 125 (341)
.+|+.++.. .+.-+-.||++||+.--+
T Consensus 135 ~MA~eL~~~----hPew~~~TC~~RI~~wL~ 161 (176)
T PF06576_consen 135 KMAEELNEK----HPEWCLRTCRRRIDWWLS 161 (176)
T ss_pred HHHHHHhcc----CCcccHHHHHHHHHHHHH
Confidence 589999874 477899999999997544
No 41
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=30.12 E-value=2.4e+02 Score=27.91 Aligned_cols=36 Identities=14% Similarity=0.170 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019413 253 SVKLLTQAILKFGEAYEQAESAKLQQVVEMEKQRMKF 289 (341)
Q Consensus 253 ~~~~la~ai~~fgE~yeR~E~ak~~~~~elEk~Rme~ 289 (341)
.+.+++.+.+.+. .|+-.|..|....+.|+..+.++
T Consensus 174 ~L~Ei~Ea~e~~~-~~~~~e~eke~~~r~l~~~~~EL 209 (269)
T PF05278_consen 174 KLEEILEAKEIYD-QHETREEEKEEKDRKLELKKEEL 209 (269)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555544442 44445555555555555555544
No 42
>PF13767 DUF4168: Domain of unknown function (DUF4168)
Probab=29.96 E-value=2.1e+02 Score=22.22 Aligned_cols=47 Identities=17% Similarity=0.136 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019413 260 AILKFGEAYEQAESAKLQQVVEMEKQRMKFAKEMELQRMQFFMKTQLEISQLK 312 (341)
Q Consensus 260 ai~~fgE~yeR~E~ak~~~~~elEk~Rme~~~elE~~R~~~~~~~Q~ei~~~~ 312 (341)
-|..|+++|..||.-+.+...+|.. . +-..+..+|-.++|.+..++.
T Consensus 5 el~~fA~A~~~ie~ir~~~~~~l~~-----~-~~~~~~~~l~~~a~~~~~~~I 51 (78)
T PF13767_consen 5 ELDQFARAVLEIEPIRQEYQQELQA-----A-EDPEEIQELQEEAQEEMVEAI 51 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----c-cCHHHHHHHHHHHHHHHHHHH
Confidence 4788999999888888887777665 1 123455566666666666655
No 43
>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Oligophrenin-1 (OPHN1) is a GTPase activating protein (GAP) with activity towards RhoA, Rac, and Cdc42, that is expressed in developing spinal cord and in adult brain areas with high plasticity. It plays a role in regulating the actin cystoskeleton as well as morphology changes in axons and dendrites, and may also function in modulating neuronal connectivity. Mutations in the OPHN1 gene causes X-linked mental retardation associated with cerebellar hypoplasia, lateral ventricle enlargement and epilepsy. OPHN1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=29.93 E-value=1.1e+02 Score=29.03 Aligned_cols=24 Identities=13% Similarity=0.306 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019413 255 KLLTQAILKFGEAYEQAESAKLQQ 278 (341)
Q Consensus 255 ~~la~ai~~fgE~yeR~E~ak~~~ 278 (341)
..+|.++.+|+...--||..++.+
T Consensus 63 ~~I~~sL~~F~~~L~~ie~~r~~l 86 (207)
T cd07633 63 INIAESFKEFAELLQEVEEERMMM 86 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999998888655554433
No 44
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=29.37 E-value=76 Score=22.25 Aligned_cols=24 Identities=17% Similarity=0.390 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHH
Q 019413 92 HWKEVADIVSSREDYTKAPKTDIQCKNRIDTVK 124 (341)
Q Consensus 92 ~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdnLK 124 (341)
-|.+||+.|. .|...|..||..|+
T Consensus 19 s~~~la~~lg---------lS~~~v~~Ri~rL~ 42 (42)
T PF13404_consen 19 SYAELAEELG---------LSESTVRRRIRRLE 42 (42)
T ss_dssp -HHHHHHHHT---------S-HHHHHHHHHHHH
T ss_pred cHHHHHHHHC---------cCHHHHHHHHHHhC
Confidence 4778988884 58999999999885
No 45
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=29.08 E-value=2.3e+02 Score=31.24 Aligned_cols=37 Identities=11% Similarity=0.099 Sum_probs=23.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019413 252 DSVKLLTQAILKFGEAYEQAESAKLQQVVEMEKQRMK 288 (341)
Q Consensus 252 ~~~~~la~ai~~fgE~yeR~E~ak~~~~~elEk~Rme 288 (341)
.-++|+.+......+-.-..|..+++..-|+|+.+..
T Consensus 79 r~~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~k 115 (907)
T KOG2264|consen 79 RILREQKRILASVSLELTELEVKRQELNSEIEEINTK 115 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3456666666666655556666666666677766664
No 46
>cd07646 I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Insulin Receptor tyrosine kinase Substrate p53. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. IRSp53 (Insulin Receptor tyrosine kinase Substrate p53) is also known as BAIAP2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2). It is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. One variant (T-form) is expressed exclusively in human breast cancer cells. The gene encoding IRSp53 is a putative susceptibility gene for Gilles de la Tourette syndrome. IRSp53 contains an N-terminal IMD, a CRIB (Cdc42 and Rac interactive binding motif), an SH3 domain, and a WASP
Probab=27.98 E-value=5.4e+02 Score=24.94 Aligned_cols=60 Identities=18% Similarity=0.273 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HH------HHHHHHHH-H--HHHHH-HHHHHHHHHHHHHHhhc
Q 019413 254 VKLLTQAILKFGEAYEQAESAKLQQVV--------EM------EKQRMKFA-K--EMELQ-RMQFFMKTQLEISQLKH 313 (341)
Q Consensus 254 ~~~la~ai~~fgE~yeR~E~ak~~~~~--------el------Ek~Rme~~-~--elE~~-R~~~~~~~Q~ei~~~~~ 313 (341)
..||-.+|-.+.+++-.|+.....+.. .| .-..|.+. + ++|.+ |.+-+.++|.|+-|+++
T Consensus 65 SkeLG~~L~~m~~~hr~i~~~le~~lk~Fh~eli~pLE~k~E~D~k~i~a~~Kky~~e~k~k~~sleK~qseLKKlRr 142 (232)
T cd07646 65 SKELGDVLFQMAEVHRQIQNQLEEMLKSFHNELLTQLEQKVELDSRYLTAALKKYQTEHRSKGESLEKCQAELKKLRK 142 (232)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999888776655433 33 33333332 1 22222 44578999999999984
No 47
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=27.89 E-value=1.7e+02 Score=24.75 Aligned_cols=41 Identities=24% Similarity=0.397 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019413 260 AILKFGEAYEQAESAK------LQQVVEMEKQRMKFAKEMELQRMQF 300 (341)
Q Consensus 260 ai~~fgE~yeR~E~ak------~~~~~elEk~Rme~~~elE~~R~~~ 300 (341)
+|+.-|.+|-+.|.|. .++...|++.|.+...|++.++.+|
T Consensus 46 sir~ag~~f~krE~A~E~~Y~r~~EkEqL~~Lk~kl~~e~~~~~k~i 92 (100)
T PF04568_consen 46 SIRAAGGAFGKREAAQEEQYFRKKEKEQLKKLKEKLKEEIEHHRKEI 92 (100)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhCCccchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555554 4445567777777777777777666
No 48
>PF11433 DUF3198: Protein of unknown function (DUF3198); InterPro: IPR024504 This domain is found at the C-terminal of a family of archaeal proteins annotated as membrane proteins.; PDB: 1X9B_A.
Probab=27.66 E-value=86 Score=23.40 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHH
Q 019413 253 SVKLLTQAILKFGEAYE-QAESAKLQ 277 (341)
Q Consensus 253 ~~~~la~ai~~fgE~ye-R~E~ak~~ 277 (341)
-+.||-+.-.+||+.|+ |+|+||.+
T Consensus 22 nL~ELE~is~rlg~~Y~~~LeeaK~k 47 (51)
T PF11433_consen 22 NLTELERISKRLGKSYQIRLEEAKEK 47 (51)
T ss_dssp HHHHHHHHHHHH-SHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHchHHHHHHHHHHHh
Confidence 46788888899999995 77777743
No 49
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=27.37 E-value=5e+02 Score=23.99 Aligned_cols=63 Identities=21% Similarity=0.312 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019413 254 VKLLTQAILKFGEAYEQAESAKLQQVV--------EME-----------KQRMKFAKEMELQRMQFFMKTQLEISQLKHG 314 (341)
Q Consensus 254 ~~~la~ai~~fgE~yeR~E~ak~~~~~--------elE-----------k~Rme~~~elE~~R~~~~~~~Q~ei~~~~~~ 314 (341)
..+|..+|..+++++-+||...+.... .|| ...-++.+|...++.+ +.+.+.++.|+..-
T Consensus 53 s~~lG~~L~~~s~~~r~i~~~~~~~~~~~~~~li~pLe~~~e~d~k~i~~~~K~y~ke~k~~~~~-l~K~~se~~Kl~KK 131 (219)
T PF08397_consen 53 SKELGDALMQISEVHRRIENELEEVFKAFHSELIQPLEKKLEEDKKYITQLEKDYEKEYKRKRDE-LKKAESELKKLRKK 131 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCC
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhc
Confidence 578999999999999999876655443 222 2233345666666655 46888888888754
Q ss_pred ccC
Q 019413 315 RRT 317 (341)
Q Consensus 315 k~~ 317 (341)
.++
T Consensus 132 ~~k 134 (219)
T PF08397_consen 132 SRK 134 (219)
T ss_dssp CCC
T ss_pred ccC
Confidence 444
No 50
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=27.37 E-value=3.2e+02 Score=23.79 Aligned_cols=43 Identities=7% Similarity=0.009 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019413 269 EQAESAKLQQVVEMEKQRMKFAKEMELQRMQFFMKTQLEISQL 311 (341)
Q Consensus 269 eR~E~ak~~~~~elEk~Rme~~~elE~~R~~~~~~~Q~ei~~~ 311 (341)
.-++.++.+...+++++...+..+++.+|.+.+.+.+.+++.+
T Consensus 83 ~~~~~a~~~a~~~~~~~~~~a~~~I~~ek~~a~~el~~~~~~l 125 (159)
T PRK09173 83 ALTAEAKRKTEEYVARRNKLAEQKIAQAETDAINAVRSSAVDL 125 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666677777777777888888888888888888876
No 51
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=27.31 E-value=4.5e+02 Score=25.02 Aligned_cols=61 Identities=20% Similarity=0.286 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019413 253 SVKLLTQAILKFGEAYEQAESAKLQQV--------VEMEKQ-----------RMKFAKEMELQRMQFFMKTQLEISQLKH 313 (341)
Q Consensus 253 ~~~~la~ai~~fgE~yeR~E~ak~~~~--------~elEk~-----------Rme~~~elE~~R~~~~~~~Q~ei~~~~~ 313 (341)
+.++|..++.++.++|..||....+.. ..||+. .-++++|.-.+|.. |.+.+.++-|+..
T Consensus 62 ~sk~lG~~L~~i~~~~r~ie~~l~~~~~~~~~~li~pLe~k~e~d~k~i~~~~K~y~~E~K~~~~~-l~K~~sel~Kl~K 140 (223)
T cd07605 62 GSQELGEALKQIVDTHKSIEASLEQVAKAFHGELILPLEKKLELDQKVINKFEKDYKKEYKQKRED-LDKARSELKKLQK 140 (223)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 557999999999999999998777663 222221 22233444444444 4689999988874
Q ss_pred c
Q 019413 314 G 314 (341)
Q Consensus 314 ~ 314 (341)
-
T Consensus 141 K 141 (223)
T cd07605 141 K 141 (223)
T ss_pred H
Confidence 3
No 52
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=26.41 E-value=4.2e+02 Score=23.55 Aligned_cols=41 Identities=20% Similarity=0.203 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019413 272 ESAKLQQVVEMEKQRMKFAKEMELQRMQFFMKTQLEISQLK 312 (341)
Q Consensus 272 E~ak~~~~~elEk~Rme~~~elE~~R~~~~~~~Q~ei~~~~ 312 (341)
+....+...+.|++.-.+..++|.+|.+.+.+.+-||..+-
T Consensus 100 ~~~~~~A~~ea~~~~~~a~~~ie~e~~~a~~el~~ei~~lA 140 (173)
T PRK13460 100 NKLLEETNNEVKAQKDQAVKEIELAKGKALSQLQNQIVEMT 140 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445577777777778888888888888888888763
No 53
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=24.54 E-value=83 Score=34.91 Aligned_cols=45 Identities=27% Similarity=0.536 Sum_probs=34.9
Q ss_pred CCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Q 019413 62 DCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTV 123 (341)
Q Consensus 62 ~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdnL 123 (341)
..|+++|-..|+.+-.+. ..++|..|-..| ++|++.|||.|.-|.
T Consensus 361 g~wt~~ED~~L~~AV~~Y---------g~kdw~k~R~~v--------PnRSdsQcR~RY~nv 405 (939)
T KOG0049|consen 361 GRWTDQEDVLLVCAVSRY---------GAKDWAKVRQAV--------PNRSDSQCRERYTNV 405 (939)
T ss_pred CCCCCHHHHHHHHHHHHh---------CccchhhHHHhc--------CCccHHHHHHHHHHH
Confidence 369999999999886542 246899887777 568999999986553
No 54
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=24.21 E-value=4.7e+02 Score=22.64 Aligned_cols=43 Identities=21% Similarity=0.269 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019413 270 QAESAKLQQVVEMEKQRMKFAKEMELQRMQFFMKTQLEISQLK 312 (341)
Q Consensus 270 R~E~ak~~~~~elEk~Rme~~~elE~~R~~~~~~~Q~ei~~~~ 312 (341)
..+..+.+.-.++|+++-++..+|+.++.++....+-|+.-+.
T Consensus 89 ea~~~~~~A~~~~~~~~~~a~~~l~~e~~~~~~~l~~qv~~~~ 131 (141)
T PRK08476 89 EAEKKIEAKKAELESKYEAFAKQLANQKQELKEQLLSQMPEFK 131 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3344445555567777777777888888888888887777664
No 55
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=23.34 E-value=71 Score=34.38 Aligned_cols=24 Identities=33% Similarity=0.767 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHhccCCCCCCCCHHHHHHHHH
Q 019413 90 QKHWKEVADIVSSREDYTKAPKTDIQCKNRID 121 (341)
Q Consensus 90 ~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKId 121 (341)
.+.|.+|+..+.. +|..||+++|.
T Consensus 27 ~nqws~i~sll~~--------kt~rqC~~rw~ 50 (617)
T KOG0050|consen 27 KNQWSRIASLLNR--------KTARQCKARWE 50 (617)
T ss_pred hHHHHHHHHHHhh--------cchhHHHHHHH
Confidence 3579999998865 79999999997
No 56
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=22.86 E-value=3.2e+02 Score=22.21 Aligned_cols=15 Identities=20% Similarity=0.271 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHhh
Q 019413 298 MQFFMKTQLEISQLK 312 (341)
Q Consensus 298 ~~~~~~~Q~ei~~~~ 312 (341)
..+..+|+.+|..|.
T Consensus 69 ~~l~~et~~~i~~i~ 83 (105)
T PF03179_consen 69 EELEKETEEKIEEIK 83 (105)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455555555553
No 57
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=22.19 E-value=3.1e+02 Score=25.61 Aligned_cols=17 Identities=24% Similarity=0.347 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019413 269 EQAESAKLQQVVEMEKQ 285 (341)
Q Consensus 269 eR~E~ak~~~~~elEk~ 285 (341)
|.||.|+++|-.|+++.
T Consensus 83 Ea~eaAR~RmQEE~dak 99 (190)
T PF06936_consen 83 EAMEAARRRMQEELDAK 99 (190)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45556666666655554
No 58
>COG1422 Predicted membrane protein [Function unknown]
Probab=22.12 E-value=4.2e+02 Score=25.17 Aligned_cols=25 Identities=24% Similarity=0.614 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHH
Q 019413 276 LQQVVEMEKQRMKFA-KEMELQRMQF 300 (341)
Q Consensus 276 ~~~~~elEk~Rme~~-~elE~~R~~~ 300 (341)
++.+.+|+++|||+. ...|+-.+|+
T Consensus 97 ~~~lkkLq~~qmem~~~Q~elmk~qf 122 (201)
T COG1422 97 MKKLKKLQEKQMEMMDDQRELMKMQF 122 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 466778888999885 4566666665
No 59
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=22.05 E-value=3.3e+02 Score=29.03 Aligned_cols=50 Identities=12% Similarity=0.112 Sum_probs=39.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019413 252 DSVKLLTQAILKFGEAYEQAESAKLQQVVEMEKQRMKFAKEMELQRMQFF 301 (341)
Q Consensus 252 ~~~~~la~ai~~fgE~yeR~E~ak~~~~~elEk~Rme~~~elE~~R~~~~ 301 (341)
.-+.-|..++..|=|+|++.+.-...-+.-|+.-|....+|++.|++-+-
T Consensus 423 rf~~~L~~~~~~iLd~Y~~~i~~s~~l~k~i~~L~~~V~~Ev~~q~ellr 472 (487)
T KOG0310|consen 423 RFASILMEVVSVILDLYARDIEGSPMLAKLIQALRGKVEQEVRVQKELLR 472 (487)
T ss_pred hhHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888999999999996555666677889999988899988876543
No 60
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=22.00 E-value=6.1e+02 Score=26.34 Aligned_cols=33 Identities=24% Similarity=0.368 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019413 280 VEMEKQRMKFAKEMELQRMQFFMKTQLEISQLK 312 (341)
Q Consensus 280 ~elEk~Rme~~~elE~~R~~~~~~~Q~ei~~~~ 312 (341)
.|.+++.-++..++|.+|.+++.+.+.||+.+-
T Consensus 93 ~ea~~i~~~a~~~Ie~ek~~a~~elr~ei~~lA 125 (445)
T PRK13428 93 AEAERIKVQGARQVQLLRAQLTRQLRLELGHES 125 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666678888888888888888888763
No 61
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact
Probab=21.79 E-value=4.4e+02 Score=25.29 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019413 256 LLTQAILKFGEAYEQAESAKLQQVV 280 (341)
Q Consensus 256 ~la~ai~~fgE~yeR~E~ak~~~~~ 280 (341)
.++.++..+|++++||=.++.+...
T Consensus 90 ~~G~aL~~~g~a~~kia~~~~~~i~ 114 (229)
T cd07616 90 AYGNALIKCGETQKQIGTADRELIQ 114 (229)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666777777777777666665444
No 62
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=21.79 E-value=4.5e+02 Score=23.56 Aligned_cols=41 Identities=10% Similarity=0.046 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019413 271 AESAKLQQVVEMEKQRMKFAKEMELQRMQFFMKTQLEISQL 311 (341)
Q Consensus 271 ~E~ak~~~~~elEk~Rme~~~elE~~R~~~~~~~Q~ei~~~ 311 (341)
.|..+.+--.+.+++.-++..+++.+|.+.+.+.+.+++.+
T Consensus 110 ~e~~~~~a~~ea~~~~~~A~~~I~~ek~~a~~~l~~~i~~l 150 (184)
T PRK13455 110 AEQAKADLEASIARRLAAAEDQIASAEAAAVKAVRDRAVSV 150 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555666788888888888888887776
No 63
>cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transforming growth factor-beta family. It also plays
Probab=21.54 E-value=5.1e+02 Score=24.80 Aligned_cols=59 Identities=10% Similarity=0.200 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhc
Q 019413 255 KLLTQAILKFGEAYEQAESAKLQQVV----------EMEKQRMKFAKEMELQRMQFFMK---TQLEISQLKH 313 (341)
Q Consensus 255 ~~la~ai~~fgE~yeR~E~ak~~~~~----------elEk~Rme~~~elE~~R~~~~~~---~Q~ei~~~~~ 313 (341)
..|+.++.+|+|+||+|..---.+.- ..=-+=+.++|||=.+|+..|.+ +|..+.|.+.
T Consensus 76 t~L~~~l~~laev~eki~~l~~~~A~~e~l~L~e~L~~Y~r~~~A~Kdll~rR~r~l~~~enA~k~L~KaR~ 147 (218)
T cd07662 76 TDICKFFLKVSELFDKTRKIEARVAADEDLKLSDLLKYYLRESQAAKDLLYRRSRSLVDYENANKALDKARA 147 (218)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36888999999999988766555432 11112234568999999988764 5566666553
No 64
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=21.49 E-value=5.5e+02 Score=24.69 Aligned_cols=28 Identities=29% Similarity=0.377 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019413 256 LLTQAILKFGEAYEQAESAKLQQVVEME 283 (341)
Q Consensus 256 ~la~ai~~fgE~yeR~E~ak~~~~~elE 283 (341)
.|..++..+|++|+||=.+|.+|-..+.
T Consensus 104 ~lg~aL~~~g~a~~kIa~ar~~~D~~I~ 131 (242)
T cd07600 104 PLSKALGKYSDAEEKIAEARLEQDQLIQ 131 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888999999999999999988766444
No 65
>PF11351 DUF3154: Protein of unknown function (DUF3154); InterPro: IPR021497 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=21.36 E-value=2.8e+02 Score=23.79 Aligned_cols=35 Identities=23% Similarity=0.266 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhh
Q 019413 278 QVVEMEKQRMKFA---KEMELQRMQFFMKTQLEISQLK 312 (341)
Q Consensus 278 ~~~elEk~Rme~~---~elE~~R~~~~~~~Q~ei~~~~ 312 (341)
...++|.++++.+ .|++..+..-+..+|.++.++-
T Consensus 18 ~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~eln~~~ 55 (123)
T PF11351_consen 18 AQAKAELQQAALEQFAAEFEAARRARFDRMQAELNRAD 55 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCc
Confidence 3334444444443 3566666777888888888764
No 66
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=20.77 E-value=4.3e+02 Score=20.94 Aligned_cols=39 Identities=23% Similarity=0.215 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019413 262 LKFGEAYEQAESAKLQQVVEMEKQRMKFAKEMELQRMQF 300 (341)
Q Consensus 262 ~~fgE~yeR~E~ak~~~~~elEk~Rme~~~elE~~R~~~ 300 (341)
..|.+...-++..+..++.+|++.+.+-...|+.+..++
T Consensus 46 ~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l 84 (127)
T smart00502 46 AAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESL 84 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777888888888888888887666666655444
No 67
>PTZ00491 major vault protein; Provisional
Probab=20.76 E-value=2.3e+02 Score=32.20 Aligned_cols=46 Identities=26% Similarity=0.342 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019413 266 EAYEQAESAKLQQVV--EMEKQRMKFAKEMELQRMQFFMKTQLEISQLK 312 (341)
Q Consensus 266 E~yeR~E~ak~~~~~--elEk~Rme~~~elE~~R~~~~~~~Q~ei~~~~ 312 (341)
|.=.|=|..+++|.. +||++||.=.-+-|.+|.++| +.|.+.+.+.
T Consensus 665 Ea~A~h~a~~~eQea~g~Lerqk~~d~~~aE~~r~~ll-el~a~s~ave 712 (850)
T PTZ00491 665 EAAARHQAELLEQEARGRLERQKMHDKAKAEEQRTKLL-ELQAESAAVE 712 (850)
T ss_pred HHHHHHHHHHHHHHhhchhHHHhhhhHHHHHHHHHHHH-HHHhHHHHHh
Confidence 566677777777776 799999988889999999885 7777777664
No 68
>KOG1772 consensus Vacuolar H+-ATPase V1 sector, subunit G [Energy production and conversion]
Probab=20.55 E-value=5.6e+02 Score=22.11 Aligned_cols=62 Identities=26% Similarity=0.220 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHh
Q 019413 251 GDSVKLLTQAILKFGEAYE--------QAESAKLQQVVEMEKQRMKFAKEMELQRMQF-----------FMKTQLEISQL 311 (341)
Q Consensus 251 ~~~~~~la~ai~~fgE~ye--------R~E~ak~~~~~elEk~Rme~~~elE~~R~~~-----------~~~~Q~ei~~~ 311 (341)
+.|+..|-+|=++-+|+.+ |+=+||.+.++|+|+-|++-.+|+-.+.-+. -..||.+|+.|
T Consensus 5 ~qGIqQLLqAEK~A~e~V~~ARk~K~~RLKQAKeEA~~Eie~yr~qrE~efk~ke~~~~G~~~~~~~~~e~~t~~ki~~l 84 (108)
T KOG1772|consen 5 SQGIQQLLQAEKRAAEKVEEARKRKLRRLKQAKEEAEKEIEEYRSQREKEFKEKESAASGSQGALEKRLEQETDDKIAGL 84 (108)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHH
Q ss_pred h
Q 019413 312 K 312 (341)
Q Consensus 312 ~ 312 (341)
+
T Consensus 85 k 85 (108)
T KOG1772|consen 85 K 85 (108)
T ss_pred H
No 69
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=20.53 E-value=6.3e+02 Score=22.68 Aligned_cols=39 Identities=10% Similarity=0.098 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019413 274 AKLQQVVEMEKQRMKFAKEMELQRMQFFMKTQLEISQLK 312 (341)
Q Consensus 274 ak~~~~~elEk~Rme~~~elE~~R~~~~~~~Q~ei~~~~ 312 (341)
...+.-.+++++.-++..+++.+|.+.+.+.+.||+.+-
T Consensus 110 il~~A~~ea~~~~~~a~~~ie~Ek~~a~~~l~~ei~~la 148 (184)
T CHL00019 110 LINQAKEDLERLENYKNETIRFEQQRAINQVRQQVFQLA 148 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344466777777777888888888888888887763
No 70
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=20.43 E-value=5.2e+02 Score=24.94 Aligned_cols=59 Identities=17% Similarity=0.255 Sum_probs=39.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhh
Q 019413 250 WGDSVKLLTQAILKFGEAYEQAESAKLQQVVEMEKQRMKFAKEMEL----------QRMQFFMKTQLEISQLK 312 (341)
Q Consensus 250 ~~~~~~~la~ai~~fgE~yeR~E~ak~~~~~elEk~Rme~~~elE~----------~R~~~~~~~Q~ei~~~~ 312 (341)
|+..-.+|+.++..||...++.+.+=.+++..|+-.=++..+|+.. +| ..+|+++.++.
T Consensus 101 ws~~E~~L~~~L~~~a~~~d~~~~~~~~~~~~l~~~f~~~Lkeyv~y~~slK~vlk~R----~~~Q~~le~k~ 169 (243)
T cd07666 101 WSASEEELADSLKGMASCIDRCCKATDKRMKGLSEQLLPVIHEYVLYSETLMGVIKRR----DQIQAELDSKV 169 (243)
T ss_pred HhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 4444556888999999999988888888777777644444455442 23 26666666665
No 71
>smart00586 ZnF_DBF Zinc finger in DBF-like proteins.
Probab=20.42 E-value=73 Score=23.64 Aligned_cols=38 Identities=24% Similarity=0.348 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHhhCC
Q 019413 114 IQCKNRIDTVKKKYKLEKTKIMSGGGSSKWVFFEKLDQLIGP 155 (341)
Q Consensus 114 ~QCRnKIdnLKKrYKkEK~k~~sG~~~s~W~fFd~LD~LLG~ 155 (341)
+-|+.|+++|..--..++.+. ....=..|..||.||..
T Consensus 9 E~Cr~kfd~l~~Hi~s~~Hr~----FA~~~~Nf~~lD~Li~~ 46 (49)
T smart00586 9 ENCREKYDDLETHLLSEKHRR----FAENNDNFQALDDLISQ 46 (49)
T ss_pred ccHhHHHhhHHHHhccHHHHH----HHcCchhHHHHHHHHHH
Confidence 579999999998666666553 12233468889988753
No 72
>PF11875 DUF3395: Domain of unknown function (DUF3395); InterPro: IPR024586 Chaperone DnaJ was originally characterised from Escherichia coli as a 41 kDa heat shock protein. DnaJ has a modular structure consisting of a J-domain, a proximal G/F-domain, and a distal zinc finger domain, followed by less conserved C-terminal sequences. Since then, a large number of DnaJ-related proteins containing a J-domain have been characterised from a variety of different organisms. In the genome of Arabidopsis thaliana a total of 89 J-domain proteins have been identified []. This entry represents a C-terminal domain found in some eukaryotic DnaJ-like proteins, including member 11 from the subfamily C1 and protein DnaJ 13 from Arabidopsis. This domain is typically between 147 to 176 amino acids in length.
Probab=20.39 E-value=3.5e+02 Score=24.01 Aligned_cols=40 Identities=18% Similarity=0.170 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019413 271 AESAKLQQVVEMEKQRMKFAKEMELQRMQFFMKTQLEISQ 310 (341)
Q Consensus 271 ~E~ak~~~~~elEk~Rme~~~elE~~R~~~~~~~Q~ei~~ 310 (341)
+|..+.+...++.+.|.++....++.+...-.+...|.++
T Consensus 11 ~~~~r~~~~~~~~~~r~eA~~~~~lm~~~a~r~~~~E~~~ 50 (151)
T PF11875_consen 11 IEEQREKNKEEIAEKRAEAESAIELMKETAERKQRKEEEK 50 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455666666777778887778887777777666666554
No 73
>KOG0850 consensus Transcription factor DLX and related proteins with LIM Zn-binding and HOX domains [Transcription]
Probab=20.18 E-value=90 Score=30.29 Aligned_cols=23 Identities=26% Similarity=0.201 Sum_probs=21.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhh
Q 019413 110 PKTDIQCKNRIDTVKKKYKLEKT 132 (341)
Q Consensus 110 ~rT~~QCRnKIdnLKKrYKkEK~ 132 (341)
..|.+|.|+.|.|=+-||||++.
T Consensus 160 GLTQTQVKIWFQNrRSK~KKl~k 182 (245)
T KOG0850|consen 160 GLTQTQVKIWFQNRRSKFKKLKK 182 (245)
T ss_pred CCchhHhhhhhhhhHHHHHHHHh
Confidence 47999999999999999999987
Done!