Query 019413
Match_columns 341
No_of_seqs 192 out of 346
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 15:42:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019413.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019413hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ebi_A DNA binding protein GT- 99.8 1E-20 3.5E-25 149.9 7.2 84 60-148 3-86 (86)
2 3sjm_A Telomeric repeat-bindin 97.7 6.5E-05 2.2E-09 56.5 5.4 51 60-125 10-60 (64)
3 1x41_A Transcriptional adaptor 97.5 0.00019 6.6E-09 52.8 5.8 48 59-123 6-53 (60)
4 2d9a_A B-MYB, MYB-related prot 97.5 0.00015 5.2E-09 53.1 5.0 49 58-123 5-53 (60)
5 1w0t_A Telomeric repeat bindin 97.4 0.00015 5.2E-09 51.9 4.8 49 62-125 3-51 (53)
6 2cu7_A KIAA1915 protein; nucle 97.4 0.00071 2.4E-08 51.4 7.9 49 60-126 8-56 (72)
7 2yus_A SWI/SNF-related matrix- 97.3 0.00014 4.8E-09 56.9 3.7 45 61-123 18-62 (79)
8 2roh_A RTBP1, telomere binding 97.3 0.0015 5.1E-08 55.3 10.2 57 59-128 29-85 (122)
9 2yum_A ZZZ3 protein, zinc fing 97.3 0.00054 1.8E-08 52.2 6.9 50 60-121 7-56 (75)
10 1guu_A C-MYB, MYB proto-oncoge 97.3 0.00022 7.7E-09 50.6 4.3 46 61-123 3-48 (52)
11 2elk_A SPCC24B10.08C protein; 97.2 0.0006 2E-08 49.9 5.3 46 62-123 10-55 (58)
12 2dim_A Cell division cycle 5-l 97.1 0.0007 2.4E-08 51.0 5.5 49 57-122 5-53 (70)
13 1gvd_A MYB proto-oncogene prot 97.1 0.00034 1.2E-08 49.7 3.6 46 61-123 3-48 (52)
14 2llk_A Cyclin-D-binding MYB-li 97.1 0.00055 1.9E-08 52.9 5.0 47 60-125 22-68 (73)
15 2din_A Cell division cycle 5-l 97.1 0.0015 5E-08 48.7 7.1 50 61-129 9-58 (66)
16 1ity_A TRF1; helix-turn-helix, 97.0 0.00084 2.9E-08 50.5 4.9 51 60-125 9-59 (69)
17 2k9n_A MYB24; R2R3 domain, DNA 97.0 0.0016 5.6E-08 52.7 7.0 49 61-127 53-101 (107)
18 2cqr_A RSGI RUH-043, DNAJ homo 97.0 0.0012 4E-08 51.1 5.6 51 61-125 18-68 (73)
19 3osg_A MYB21; transcription-DN 96.9 0.00072 2.5E-08 56.4 4.3 49 61-127 62-110 (126)
20 2cjj_A Radialis; plant develop 96.8 0.0034 1.2E-07 50.6 7.5 57 61-131 8-64 (93)
21 2ckx_A NGTRF1, telomere bindin 96.8 0.002 6.8E-08 50.9 5.5 53 63-128 2-54 (83)
22 2cqq_A RSGI RUH-037, DNAJ homo 96.8 0.0064 2.2E-07 46.8 8.2 53 59-126 6-58 (72)
23 2ltp_A Nuclear receptor corepr 95.6 0.00037 1.3E-08 55.4 0.0 49 62-128 17-65 (89)
24 1gv2_A C-MYB, MYB proto-oncoge 96.5 0.0013 4.6E-08 52.7 3.2 48 61-126 56-103 (105)
25 1x58_A Hypothetical protein 49 96.3 0.0064 2.2E-07 45.9 5.3 57 55-126 2-58 (62)
26 2juh_A Telomere binding protei 96.1 0.018 6.1E-07 48.6 8.0 56 59-127 15-70 (121)
27 2aje_A Telomere repeat-binding 96.1 0.0051 1.8E-07 50.7 4.5 54 60-126 12-65 (105)
28 1h8a_C AMV V-MYB, MYB transfor 96.0 0.0021 7.1E-08 53.5 1.5 49 60-126 78-126 (128)
29 3osg_A MYB21; transcription-DN 95.8 0.0097 3.3E-07 49.5 5.0 46 60-123 10-55 (126)
30 1wgx_A KIAA1903 protein; MYB D 95.8 0.024 8.4E-07 43.9 6.9 50 60-123 7-56 (73)
31 1h89_C C-MYB, MYB proto-oncoge 95.4 0.0047 1.6E-07 53.1 1.5 48 60-125 109-156 (159)
32 1gv2_A C-MYB, MYB proto-oncoge 95.3 0.013 4.5E-07 46.8 4.0 45 61-122 4-48 (105)
33 2k9n_A MYB24; R2R3 domain, DNA 95.2 0.018 6.3E-07 46.4 4.5 43 63-122 3-45 (107)
34 3zqc_A MYB3; transcription-DNA 95.2 0.007 2.4E-07 50.6 2.0 45 62-124 55-99 (131)
35 1h8a_C AMV V-MYB, MYB transfor 95.1 0.016 5.5E-07 48.0 3.9 45 61-122 27-71 (128)
36 1ign_A Protein (RAP1); RAP1,ye 94.5 0.027 9.3E-07 52.7 4.3 52 60-123 7-58 (246)
37 1h89_C C-MYB, MYB proto-oncoge 94.0 0.037 1.3E-06 47.4 3.8 46 61-123 58-103 (159)
38 2iw5_B Protein corest, REST co 94.0 0.03 1E-06 52.0 3.3 49 61-127 133-181 (235)
39 2eqr_A N-COR1, N-COR, nuclear 92.8 0.083 2.8E-06 38.8 3.4 44 62-123 13-56 (61)
40 3zqc_A MYB3; transcription-DNA 92.5 0.03 1E-06 46.7 0.7 44 63-123 4-47 (131)
41 2xag_B REST corepressor 1; ami 87.4 0.35 1.2E-05 49.2 3.6 43 60-120 379-421 (482)
42 1ug2_A 2610100B20RIK gene prod 85.6 2 6.9E-05 34.7 6.4 59 59-132 31-89 (95)
43 3hm5_A DNA methyltransferase 1 84.5 1.8 6.2E-05 34.8 5.8 59 62-133 31-89 (93)
44 2lr8_A CAsp8-associated protei 82.9 0.27 9.2E-06 37.8 0.0 56 61-132 14-69 (70)
45 1fex_A TRF2-interacting telome 78.8 1.9 6.6E-05 31.5 3.7 52 62-122 3-55 (59)
46 1gmj_A ATPase inhibitor; coile 69.4 17 0.00057 28.8 7.1 52 260-312 14-71 (84)
47 3oja_B Anopheles plasmodium-re 67.7 21 0.00073 35.4 9.4 29 273-301 533-561 (597)
48 2yqk_A Arginine-glutamic acid 65.8 9.1 0.00031 28.0 4.7 41 60-118 8-49 (63)
49 4a69_C Nuclear receptor corepr 56.9 6.5 0.00022 31.2 2.7 40 61-118 43-82 (94)
50 4iej_A DNA methyltransferase 1 50.9 30 0.001 27.7 5.7 57 62-131 31-87 (93)
51 2v4h_A NF-kappa-B essential mo 47.6 72 0.0024 26.3 7.6 53 252-311 24-76 (110)
52 4eef_G F-HB80.4, designed hema 41.6 3.3 0.00011 32.1 -1.2 45 61-119 20-64 (74)
53 2crg_A Metastasis associated p 40.0 29 0.00099 25.8 3.8 42 60-119 7-49 (70)
54 2cuf_A FLJ21616 protein; homeo 34.5 1.5E+02 0.0052 22.5 10.5 68 60-133 10-83 (95)
55 1x9b_A Hypothetical membrane p 23.0 57 0.002 23.5 2.7 25 253-277 24-49 (53)
56 2zuo_A MVP, major vault protei 20.7 2.1E+02 0.0073 31.0 7.6 41 270-311 674-716 (861)
57 2p7n_A Pathogenicity island 1 20.3 94 0.0032 30.9 4.5 68 68-135 184-253 (407)
58 1ign_A Protein (RAP1); RAP1,ye 20.0 1.8E+02 0.006 27.1 6.0 37 86-130 167-203 (246)
No 1
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=99.82 E-value=1e-20 Score=149.92 Aligned_cols=84 Identities=15% Similarity=0.315 Sum_probs=74.2
Q ss_pred CCCCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 019413 60 REDCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTVKKKYKLEKTKIMSGGG 139 (341)
Q Consensus 60 R~~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdnLKKrYKkEK~k~~sG~~ 139 (341)
|...||++||.+||++|++...++..+..+..+|++||..|.++ |+.+|+.||++||++|++.||++|+..... +
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~----G~~rs~~qC~~K~~nL~k~Yk~~k~~~~~s-G 77 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREK----GFDRSPDMCTDKWRNLLKEFKKAKHHDRGN-G 77 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHHHCSCSSCCCCC-C
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHHHHHHHHHhcccC-C
Confidence 66899999999999999999988888888888999999999985 588999999999999999999999987532 2
Q ss_pred CCCCcchHH
Q 019413 140 SSKWVFFEK 148 (341)
Q Consensus 140 ~s~W~fFd~ 148 (341)
..+|+||+.
T Consensus 78 ~~~~~yf~e 86 (86)
T 2ebi_A 78 SAKMSYYKE 86 (86)
T ss_dssp CCCCCCCCC
T ss_pred CCCCCCCCc
Confidence 339999973
No 2
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=97.65 E-value=6.5e-05 Score=56.50 Aligned_cols=51 Identities=16% Similarity=0.346 Sum_probs=39.1
Q ss_pred CCCCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHH
Q 019413 60 REDCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTVKK 125 (341)
Q Consensus 60 R~~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdnLKK 125 (341)
+...||.+|...|+++.... +.+ .|..||..+.- ..||+.|||+||.||.|
T Consensus 10 kk~~WT~eED~~L~~~V~~~----G~~-----~W~~Ia~~~~~------~~Rt~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 10 KKQKWTVEESEWVKAGVQKY----GEG-----NWAAISKNYPF------VNRTAVMIKDRWRTMKR 60 (64)
T ss_dssp CCCCCCHHHHHHHHHHHHHH----CTT-----CHHHHHHHSCC------SSCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHcc----CCC-----chHHHHhhcCC------CCCCHHHHHHHHHHHhc
Confidence 45689999999999986432 111 59999987521 24999999999999876
No 3
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=97.47 E-value=0.00019 Score=52.79 Aligned_cols=48 Identities=19% Similarity=0.398 Sum_probs=37.1
Q ss_pred CCCCCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Q 019413 59 GREDCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTV 123 (341)
Q Consensus 59 ~R~~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdnL 123 (341)
-....||.+|-..||++.... +. ..|.+||..|. .||+.|||+++.++
T Consensus 6 ~~~~~WT~eED~~L~~~v~~~----G~-----~~W~~Ia~~~~--------~Rt~~qcr~r~~~~ 53 (60)
T 1x41_A 6 SGDPSWTAQEEMALLEAVMDC----GF-----GNWQDVANQMC--------TKTKEECEKHYMKY 53 (60)
T ss_dssp CCCSSSCHHHHHHHHHHHHHT----CT-----TCHHHHHHHHT--------TSCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHH----Cc-----CcHHHHHHHhC--------CCCHHHHHHHHHHH
Confidence 345689999999999985432 11 26999999994 38999999998754
No 4
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=97.45 E-value=0.00015 Score=53.06 Aligned_cols=49 Identities=24% Similarity=0.359 Sum_probs=37.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Q 019413 58 GGREDCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTV 123 (341)
Q Consensus 58 ~~R~~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdnL 123 (341)
.-+...||.+|-..|+++.... |. ..|..||..|. .||+.|||+++.++
T Consensus 5 ~~~k~~Wt~eED~~L~~~v~~~------G~---~~W~~Ia~~~~--------~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 5 SSGKVKWTHEEDEQLRALVRQF------GQ---QDWKFLASHFP--------NRTDQQCQYRWLRV 53 (60)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHT------CT---TCHHHHHHHCS--------SSCHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHh------CC---CCHHHHHHHcc--------CCCHHHHHHHHHHH
Confidence 3455689999999999987542 21 26999999873 38999999998764
No 5
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=97.44 E-value=0.00015 Score=51.91 Aligned_cols=49 Identities=20% Similarity=0.288 Sum_probs=38.5
Q ss_pred CCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHH
Q 019413 62 DCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTVKK 125 (341)
Q Consensus 62 ~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdnLKK 125 (341)
..||.+|...|+++.... |. ..|..||..|.- ..||+.||++|+.+|.+
T Consensus 3 ~~WT~eEd~~L~~~v~~~------G~---~~W~~Ia~~~~~------~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 3 QAWLWEEDKNLRSGVRKY------GE---GNWSKILLHYKF------NNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCHHHHHHHHHHHHHH------CT---TCHHHHHHHSCC------SSCCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHH------Cc---CCHHHHHHHcCC------CCCCHHHHHHHHHHHHc
Confidence 479999999999987642 21 269999998731 14899999999999875
No 6
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.36 E-value=0.00071 Score=51.41 Aligned_cols=49 Identities=14% Similarity=0.325 Sum_probs=39.1
Q ss_pred CCCCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHH
Q 019413 60 REDCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTVKKK 126 (341)
Q Consensus 60 R~~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdnLKKr 126 (341)
....||.+|-..||++.... |+ .|..||..|- .||+.|||+++.++-++
T Consensus 8 ~~~~WT~eEd~~l~~~~~~~------G~----~W~~Ia~~~~--------~Rt~~q~k~r~~~~l~~ 56 (72)
T 2cu7_A 8 YSVKWTIEEKELFEQGLAKF------GR----RWTKISKLIG--------SRTVLQVKSYARQYFKN 56 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHT------CS----CHHHHHHHHS--------SSCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH------Cc----CHHHHHHHcC--------CCCHHHHHHHHHHHHHH
Confidence 44689999999999987642 32 7999999883 38999999999877554
No 7
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=97.33 E-value=0.00014 Score=56.91 Aligned_cols=45 Identities=22% Similarity=0.426 Sum_probs=35.7
Q ss_pred CCCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Q 019413 61 EDCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTV 123 (341)
Q Consensus 61 ~~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdnL 123 (341)
...||.+|...||++... + | ..|..||..|- .||..||++++.+|
T Consensus 18 ~~~WT~eEd~~Ll~~v~~----~--G----~~W~~IA~~v~--------~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 18 GREWTEQETLLLLEALEM----Y--K----DDWNKVSEHVG--------SRTQDECILHFLRL 62 (79)
T ss_dssp SCCCCHHHHHHHHHHHHH----S--S----SCHHHHHHHHS--------SCCHHHHHHHHTTS
T ss_pred CCCcCHHHHHHHHHHHHH----h--C----CCHHHHHHHcC--------CCCHHHHHHHHHHh
Confidence 468999999999998543 1 2 37999999994 38999999987654
No 8
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=97.32 E-value=0.0015 Score=55.28 Aligned_cols=57 Identities=14% Similarity=0.208 Sum_probs=43.1
Q ss_pred CCCCCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHH
Q 019413 59 GREDCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTVKKKYK 128 (341)
Q Consensus 59 ~R~~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdnLKKrYK 128 (341)
.+...||.+|..+|++..... +.| .|..|+......+ ..||..|||+||.||.+.-.
T Consensus 29 r~r~~WT~EEd~~L~~gV~k~----G~g-----~W~~I~~~~~~~~----~~RT~vdlKdRWrnllk~~~ 85 (122)
T 2roh_A 29 RIRRPFTVAEVELLVEAVEHL----GTG-----RWRDVKFRAFENV----HHRTYVDLKDKWKTLVHTAS 85 (122)
T ss_dssp CCCCCCCHHHHHHHHHHHHHH----SSS-----CHHHHHHHHHSSS----CCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHH----CCC-----ChHHHHHHhcccc----CCCCHHHHHHHHHHHHhhcc
Confidence 345689999999999987642 222 6999999764321 36999999999999987543
No 9
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.32 E-value=0.00054 Score=52.24 Aligned_cols=50 Identities=14% Similarity=0.334 Sum_probs=37.1
Q ss_pred CCCCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHH
Q 019413 60 REDCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRID 121 (341)
Q Consensus 60 R~~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKId 121 (341)
....||.+|-..|+++... +..+......|..||..|- .||..||++++.
T Consensus 7 ~~~~WT~eEd~~L~~~v~~----~g~~~~~~~~W~~IA~~~~--------~Rt~~qcr~r~~ 56 (75)
T 2yum_A 7 GNQLWTVEEQKKLEQLLIK----YPPEEVESRRWQKIADELG--------NRTAKQVASQVQ 56 (75)
T ss_dssp CSSCCCHHHHHHHHHHHHH----SCCCSCHHHHHHHHHHHHS--------SSCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH----hCCCCCCcccHHHHHHHhC--------CCCHHHHHHHHH
Confidence 3458999999999988643 2222212358999999994 389999999994
No 10
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=97.30 E-value=0.00022 Score=50.61 Aligned_cols=46 Identities=26% Similarity=0.585 Sum_probs=36.8
Q ss_pred CCCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Q 019413 61 EDCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTV 123 (341)
Q Consensus 61 ~~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdnL 123 (341)
...||.+|-..|+++.... |. ..|..||..|. .||+.||++++.++
T Consensus 3 ~~~Wt~eED~~L~~~v~~~------G~---~~W~~Ia~~~~--------~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQN------GT---DDWKVIANYLP--------NRTDVQCQHRWQKV 48 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHH------CS---SCHHHHHHTST--------TCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHh------CC---CCHHHHHHHcC--------CCCHHHHHHHHHHH
Confidence 3589999999999987642 22 25999998873 38999999999875
No 11
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=97.15 E-value=0.0006 Score=49.92 Aligned_cols=46 Identities=26% Similarity=0.551 Sum_probs=36.2
Q ss_pred CCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Q 019413 62 DCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTV 123 (341)
Q Consensus 62 ~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdnL 123 (341)
..||.+|-..||++-... | ...|.+||..|. ..||+.||++++.++
T Consensus 10 ~~WT~eED~~L~~~v~~~------G---~~~W~~IA~~~~-------~~Rt~~qcr~r~~~~ 55 (58)
T 2elk_A 10 ENWGADEELLLIDACETL------G---LGNWADIADYVG-------NARTKEECRDHYLKT 55 (58)
T ss_dssp CCCCHHHHHHHHHHHHHT------T---TTCHHHHHHHHC-------SSCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH------C---cCCHHHHHHHHC-------CCCCHHHHHHHHHHH
Confidence 469999999999987542 1 136999999994 148999999999764
No 12
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.12 E-value=0.0007 Score=50.99 Aligned_cols=49 Identities=24% Similarity=0.517 Sum_probs=37.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 019413 57 GGGREDCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDT 122 (341)
Q Consensus 57 g~~R~~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdn 122 (341)
..-+...||.+|-..|+++.... |. ..|..||..|. .||+.|||+|+.+
T Consensus 5 ~~~k~~~Wt~eED~~L~~~v~~~------G~---~~W~~Ia~~l~--------~Rt~~qcr~Rw~~ 53 (70)
T 2dim_A 5 SSGKGGVWRNTEDEILKAAVMKY------GK---NQWSRIASLLH--------RKSAKQCKARWYE 53 (70)
T ss_dssp SCSTTCCCCHHHHHHHHHHHHHT------CS---SCHHHHHHHST--------TCCHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHH------Cc---CCHHHHHHHhc--------CCCHHHHHHHHHH
Confidence 34456799999999999886542 21 26999999884 3899999999865
No 13
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=97.12 E-value=0.00034 Score=49.70 Aligned_cols=46 Identities=22% Similarity=0.437 Sum_probs=36.0
Q ss_pred CCCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Q 019413 61 EDCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTV 123 (341)
Q Consensus 61 ~~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdnL 123 (341)
...||.+|-..|+++.... |. ..|..||..|. .||+.|||+++.+.
T Consensus 3 k~~Wt~eED~~L~~~v~~~------G~---~~W~~Ia~~~~--------~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKY------GP---KRWSVIAKHLK--------GRIGKQCRERWHNH 48 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHH------CT---TCHHHHHTTST--------TCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHH------Cc---ChHHHHHHHcC--------CCCHHHHHHHHHHH
Confidence 3589999999999987542 21 36999998873 38999999998763
No 14
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=97.11 E-value=0.00055 Score=52.95 Aligned_cols=47 Identities=15% Similarity=0.289 Sum_probs=38.1
Q ss_pred CCCCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHH
Q 019413 60 REDCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTVKK 125 (341)
Q Consensus 60 R~~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdnLKK 125 (341)
....||.+|-..||+++... |+ .|..||..| . ||+.|||+++..|++
T Consensus 22 ~k~~wT~EED~~L~~l~~~~------G~----kW~~IA~~l-g--------Rt~~q~knRw~~L~~ 68 (73)
T 2llk_A 22 HVGKYTPEEIEKLKELRIKH------GN----DWATIGAAL-G--------RSASSVKDRCRLMKD 68 (73)
T ss_dssp CCCSSCHHHHHHHHHHHHHH------SS----CHHHHHHHH-T--------SCHHHHHHHHHHCSC
T ss_pred CCCCCCHHHHHHHHHHHHHH------CC----CHHHHHHHh-C--------CCHHHHHHHHHHHHH
Confidence 34589999999999987541 32 299999999 5 799999999988865
No 15
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.10 E-value=0.0015 Score=48.67 Aligned_cols=50 Identities=18% Similarity=0.312 Sum_probs=38.1
Q ss_pred CCCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHHH
Q 019413 61 EDCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTVKKKYKL 129 (341)
Q Consensus 61 ~~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdnLKKrYKk 129 (341)
...||.+|-..||++... -|+ .|..||. |- .||+.|||+++.++-+.-.+
T Consensus 9 k~~WT~eED~~L~~~~~~------~g~----~W~~Ia~-~~--------gRt~~qcr~Rw~~~l~~~~~ 58 (66)
T 2din_A 9 KTEWSREEEEKLLHLAKL------MPT----QWRTIAP-II--------GRTAAQCLEHYEFLLDKAAQ 58 (66)
T ss_dssp CCCCCHHHHHHHHHHHHH------CTT----CHHHHHH-HH--------SSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH------cCC----CHHHHhc-cc--------CcCHHHHHHHHHHHhChHhc
Confidence 457999999999998331 222 6999999 63 28999999999988665443
No 16
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=96.99 E-value=0.00084 Score=50.51 Aligned_cols=51 Identities=20% Similarity=0.297 Sum_probs=39.0
Q ss_pred CCCCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHH
Q 019413 60 REDCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTVKK 125 (341)
Q Consensus 60 R~~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdnLKK 125 (341)
+...||.+|...||++.... |. ..|..||..|.- ..||+.|||+||.++.+
T Consensus 9 ~r~~WT~eED~~L~~~v~~~------G~---~~W~~Ia~~~~~------~~Rt~~qcr~Rw~~~l~ 59 (69)
T 1ity_A 9 KRQAWLWEEDKNLRSGVRKY------GE---GNWSKILLHYKF------NNRTSVMLKDRWRTMKK 59 (69)
T ss_dssp SCCCCCHHHHHHHHHHHHHH------CS---SCHHHHHHHSCC------SSCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH------CC---CcHHHHHHHcCc------CCCCHHHHHHHHHHHcC
Confidence 34589999999999987642 21 269999998731 15899999999988754
No 17
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=96.99 E-value=0.0016 Score=52.69 Aligned_cols=49 Identities=20% Similarity=0.456 Sum_probs=40.3
Q ss_pred CCCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHH
Q 019413 61 EDCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTVKKKY 127 (341)
Q Consensus 61 ~~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdnLKKrY 127 (341)
...||.+|-..||++.... |+ .|..||..|. .||+.||++++.+|.++-
T Consensus 53 ~~~WT~eEd~~L~~~~~~~------G~----~W~~Ia~~l~--------gRt~~~~k~rw~~l~r~~ 101 (107)
T 2k9n_A 53 TDPWSPEEDMLLDQKYAEY------GP----KWNKISKFLK--------NRSDNNIRNRWMMIARHR 101 (107)
T ss_dssp TCCCCHHHHHHHHHHHHHT------CS----CHHHHHHHHS--------SSCHHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHh------Cc----CHHHHHHHCC--------CCCHHHHHHHHHHHHhhH
Confidence 4589999999999987652 32 5999999883 489999999999998763
No 18
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=96.96 E-value=0.0012 Score=51.10 Aligned_cols=51 Identities=24% Similarity=0.474 Sum_probs=39.0
Q ss_pred CCCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHH
Q 019413 61 EDCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTVKK 125 (341)
Q Consensus 61 ~~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdnLKK 125 (341)
...||.+|-.+|+.+... +..+ ....|..||..| ..||..||++++.+|.+
T Consensus 18 ~~~WT~eEd~~L~~al~~----~g~~--~~~rW~~IA~~v--------pGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 18 EEPWTQNQQKLLELALQQ----YPRG--SSDCWDKIARCV--------PSKSKEDCIARYKLLVS 68 (73)
T ss_dssp SCCCCHHHHHHHHHHHHH----SCSS--SHHHHHHHGGGC--------SSSCHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHH----cCCC--CCchHHHHHHHc--------CCCCHHHHHHHHHHHHH
Confidence 357999999999988642 2222 235799999888 34899999999998853
No 19
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=96.90 E-value=0.00072 Score=56.42 Aligned_cols=49 Identities=29% Similarity=0.524 Sum_probs=39.3
Q ss_pred CCCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHH
Q 019413 61 EDCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTVKKKY 127 (341)
Q Consensus 61 ~~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdnLKKrY 127 (341)
...||.+|...||++.... |+ .|..||..|. .||+.||++|+.+|.+++
T Consensus 62 ~~~WT~eEd~~L~~~v~~~------G~----~W~~Ia~~l~--------gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 62 HTPWTAEEDALLVQKIQEY------GR----QWAIIAKFFP--------GRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp CSCCCHHHHHHHHHHHHHH------CS----CHHHHHTTST--------TCCHHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHHHHH------Cc----CHHHHHHHcC--------CCCHHHHHHHHHHHHHhc
Confidence 3479999999999987553 21 3999998662 489999999999988764
No 20
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=96.82 E-value=0.0034 Score=50.59 Aligned_cols=57 Identities=18% Similarity=0.282 Sum_probs=43.3
Q ss_pred CCCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHHHHh
Q 019413 61 EDCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTVKKKYKLEK 131 (341)
Q Consensus 61 ~~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdnLKKrYKkEK 131 (341)
...||.+|-.+|+.+-.. +..+ ....|..||..|- .||..||++++.+|.+.-+.++
T Consensus 8 ~~~WT~eEd~~L~~al~~----~~~~--~~~rW~~IA~~vp--------GRT~~q~k~ry~~l~~dv~~ie 64 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAV----YDKD--TPDRWANVARAVE--------GRTPEEVKKHYEILVEDIKYIE 64 (93)
T ss_dssp CCSCCHHHHHHHHHHHHH----SCTT--CTTHHHHHHHHST--------TCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH----cCCC--CCchHHHHHHHcC--------CCCHHHHHHHHHHHHHHHHHhh
Confidence 357999999999888542 2222 1247999999883 4899999999999988766554
No 21
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=96.76 E-value=0.002 Score=50.93 Aligned_cols=53 Identities=19% Similarity=0.303 Sum_probs=39.3
Q ss_pred CCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHH
Q 019413 63 CWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTVKKKYK 128 (341)
Q Consensus 63 ~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdnLKKrYK 128 (341)
.||.+|..+|++.... ++.| .|..|+..-...+ ..||+.|||+||.||.++-.
T Consensus 2 ~WT~eEd~~L~~gv~k----~G~g-----~W~~I~~~~~~~~----~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEH----LGTG-----RWRDVKMRAFDNA----DHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCHHHHHHHHHHHHH----HCSS-----CHHHHHHHHCTTC----TTSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH----HCCC-----CcHHHHHhhcccc----CCCCHHHHHHHHHHHHHhcc
Confidence 5999999999987654 2323 6999998522111 35999999999999987543
No 22
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=96.75 E-value=0.0064 Score=46.76 Aligned_cols=53 Identities=13% Similarity=0.332 Sum_probs=40.5
Q ss_pred CCCCCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHH
Q 019413 59 GREDCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTVKKK 126 (341)
Q Consensus 59 ~R~~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdnLKKr 126 (341)
.....||.+|-..|+.+.. .+..+. ...|+.||..| . ||..||+++++.|++.
T Consensus 6 ~~~~~WT~eE~k~fe~al~----~~p~~t--~~RW~~IA~~l-g--------Rt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 6 SGAPEWTEEDLSQLTRSMV----KFPGGT--PGRWEKIAHEL-G--------RSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHH----HSCTTC--TTHHHHHHHHH-T--------SCHHHHHHHHHHHHHS
T ss_pred CCCCCCCHHHHHHHHHHHH----HCCCCC--CcHHHHHHHHh-C--------CCHHHHHHHHHHHHHh
Confidence 3456899999999998864 233333 24699999998 2 7999999998888765
No 23
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=95.57 E-value=0.00037 Score=55.36 Aligned_cols=49 Identities=33% Similarity=0.517 Sum_probs=40.2
Q ss_pred CCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHH
Q 019413 62 DCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTVKKKYK 128 (341)
Q Consensus 62 ~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdnLKKrYK 128 (341)
..||.+|-..||++.... |+ .|..||..|- .||+.||++++.++.+++.
T Consensus 17 ~~WT~eEd~~l~~~~~~~------G~----~W~~IA~~l~--------gRt~~q~k~r~~~~lrk~~ 65 (89)
T 2ltp_A 17 QGWTEEEMGTAKKGLLEH------GR----NWSAIARMVG--------SKTVSQCKNFYFNYKKRQN 65 (89)
Confidence 489999999999987653 32 5999999884 3899999999998877764
No 24
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=96.53 E-value=0.0013 Score=52.70 Aligned_cols=48 Identities=25% Similarity=0.560 Sum_probs=37.7
Q ss_pred CCCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHH
Q 019413 61 EDCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTVKKK 126 (341)
Q Consensus 61 ~~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdnLKKr 126 (341)
...||.+|-..||++.... |+ .|..||..| ..||+.||++++.+|.++
T Consensus 56 ~~~Wt~eEd~~L~~~~~~~------G~----~W~~Ia~~l--------~gRt~~~~k~rw~~~~~~ 103 (105)
T 1gv2_A 56 KTSWTEEEDRIIYQAHKRL------GN----RWAEIAKLL--------PGRTDNAIKNHWNSTMRR 103 (105)
T ss_dssp CCCCCHHHHHHHHHHHHHH------SS----CHHHHHTTC--------TTCCHHHHHHHHHHHTC-
T ss_pred ccCCCHHHHHHHHHHHHHh------CC----CHHHHHHHc--------CCCCHHHHHHHHHHHHhc
Confidence 4589999999999987543 22 599999765 348999999999988654
No 25
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=96.27 E-value=0.0064 Score=45.87 Aligned_cols=57 Identities=11% Similarity=0.237 Sum_probs=42.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHH
Q 019413 55 GGGGGREDCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTVKKK 126 (341)
Q Consensus 55 ggg~~R~~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdnLKKr 126 (341)
+.|....-.||++|+..||+..... |. .|..|+....-. ..||.+..++|+.+|.|+
T Consensus 2 ~~~~~~r~~WT~EE~~~L~~gV~k~------G~----~W~~I~~~y~f~-----~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 2 SSGSSGRKDFTKEEVNYLFHGVKTM------GN----HWNSILWSFPFQ-----KGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CCCCCCSSSCCHHHHHHHHHHHHHH------CS----CHHHHHHHSCCC-----TTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHH------hH----hHHHHHHhCCCc-----cCcccchHHHHHHHHHhc
Confidence 3445566799999999999987654 32 699998654221 369999999999999863
No 26
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=96.13 E-value=0.018 Score=48.59 Aligned_cols=56 Identities=16% Similarity=0.228 Sum_probs=42.9
Q ss_pred CCCCCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHH
Q 019413 59 GREDCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTVKKKY 127 (341)
Q Consensus 59 ~R~~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdnLKKrY 127 (341)
.+...||.+|..+|++..... +.| .|..|+..+... -..||+.|||+||.||.+.-
T Consensus 15 r~r~~WT~EEd~~L~~gV~k~----G~G-----~W~~Ia~~~~~~----f~~RT~v~lKdRWrnllk~~ 70 (121)
T 2juh_A 15 RIRRPFSVAEVEALVEAVEHL----GTG-----RWRDVKMRAFDN----ADHRTYVDLKDKWKTLVHTA 70 (121)
T ss_dssp CSSCCCCHHHHHHHHHHHHHH----GGG-----CHHHHHHHHCSC----CSSCCSHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHH----CCC-----CHHHHHHHhccc----cCCCCHHHHHHHHHHHHhhh
Confidence 344689999999999887642 222 699999987431 13599999999999999863
No 27
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=96.13 E-value=0.0051 Score=50.69 Aligned_cols=54 Identities=19% Similarity=0.291 Sum_probs=40.1
Q ss_pred CCCCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHH
Q 019413 60 REDCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTVKKK 126 (341)
Q Consensus 60 R~~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdnLKKr 126 (341)
+...||.+|+.+|++.... ++.| .|..|+..+... . ..||+.|||+||.||.+.
T Consensus 12 ~r~~WT~EEd~~L~~gV~k----~G~g-----~W~~I~~~~~~~---f-~~RT~v~lKdrWrnllk~ 65 (105)
T 2aje_A 12 IRRPFSVAEVEALVQAVEK----LGTG-----RWRDVKLCAFED---A-DHRTYVDLKDKWKTLVHT 65 (105)
T ss_dssp CCCSCCHHHHHHHHHHHHH----HCSS-----SHHHHHSSSSSS---T-TCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHH----hCCC-----ChHHHHHHhccc---c-CCCCHHHHHHHHHHHHhh
Confidence 4468999999999987654 2223 699998754211 1 369999999999999874
No 28
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=95.98 E-value=0.0021 Score=53.50 Aligned_cols=49 Identities=24% Similarity=0.575 Sum_probs=38.4
Q ss_pred CCCCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHH
Q 019413 60 REDCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTVKKK 126 (341)
Q Consensus 60 R~~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdnLKKr 126 (341)
....||.+|-..||++.... |+ .|..||..| ..||+.||++++.+|.++
T Consensus 78 ~~~~WT~eEd~~L~~~~~~~------G~----~W~~Ia~~l--------~gRt~~~~k~r~~~~~~~ 126 (128)
T 1h8a_C 78 KKTSWTEEEDRIIYQAHKRL------GN----RWAEIAKLL--------PGRTDNAVKNHWNSTMRR 126 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHH------CS----CHHHHGGGS--------TTCCHHHHHHHHHTTTTC
T ss_pred ccccCCHHHHHHHHHHHHHH------Cc----CHHHHHHHC--------CCCCHHHHHHHHHHHHhc
Confidence 34589999999999987643 22 599999766 248999999999887543
No 29
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=95.82 E-value=0.0097 Score=49.50 Aligned_cols=46 Identities=20% Similarity=0.441 Sum_probs=36.6
Q ss_pred CCCCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Q 019413 60 REDCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTV 123 (341)
Q Consensus 60 R~~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdnL 123 (341)
+...||.+|...|+++.... |. .|.+||..|. .||..||+.|+.+.
T Consensus 10 kk~~WT~eED~~L~~~v~~~------G~----~W~~Ia~~~~--------~Rt~~qcr~Rw~~~ 55 (126)
T 3osg_A 10 KKQKFTPEEDEMLKRAVAQH------GS----DWKMIAATFP--------NRNARQCRDRWKNY 55 (126)
T ss_dssp SSCCCCHHHHHHHHHHHHHH------TT----CHHHHHHTCT--------TCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHh------CC----CHHHHHHHcC--------CCCHHHHHHHHhhh
Confidence 34589999999999988653 32 5999998773 38999999998763
No 30
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=95.82 E-value=0.024 Score=43.86 Aligned_cols=50 Identities=22% Similarity=0.418 Sum_probs=37.0
Q ss_pred CCCCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Q 019413 60 REDCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTV 123 (341)
Q Consensus 60 R~~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdnL 123 (341)
....||.+|..+|..+-. .+..+. ...|+.||..|- .||..||+.+.+.|
T Consensus 7 ~~~~WT~eE~k~fe~ALa----~~~~~t--p~rWe~IA~~V~--------gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFA----SLPKHK--PGFWSEVAAAVG--------SRSPEECQRKYMEN 56 (73)
T ss_dssp SSSCCCHHHHHHHHHHHH----HSCSSS--SSHHHHHHHHTT--------TSCHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHH----HCCCCC--ccHHHHHHHHcC--------CCCHHHHHHHHHHH
Confidence 446899999999998844 222222 247999999983 28999999776666
No 31
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=95.38 E-value=0.0047 Score=53.10 Aligned_cols=48 Identities=25% Similarity=0.560 Sum_probs=38.2
Q ss_pred CCCCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHH
Q 019413 60 REDCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTVKK 125 (341)
Q Consensus 60 R~~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdnLKK 125 (341)
+...||.+|-..||++.... |+ .|.+||..| ..||+.||++++..|.+
T Consensus 109 ~~~~WT~eEd~~L~~~~~~~------g~----~W~~Ia~~l--------~gRt~~~~knr~~~~~r 156 (159)
T 1h89_C 109 KKTSWTEEEDRIIYQAHKRL------GN----RWAEIAKLL--------PGRTDNAIKNHWNSTMR 156 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHH------CS----CHHHHHTTS--------TTCCHHHHHHHHHTTTC
T ss_pred cccCCChHHHHHHHHHHHHH------CC----CHHHHHHHC--------CCCCHHHHHHHHHHHHh
Confidence 44689999999999997542 22 599999866 34899999999998754
No 32
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=95.35 E-value=0.013 Score=46.82 Aligned_cols=45 Identities=20% Similarity=0.445 Sum_probs=34.8
Q ss_pred CCCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 019413 61 EDCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDT 122 (341)
Q Consensus 61 ~~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdn 122 (341)
...||.+|...|+.+.... |. ..|..||..|. .||+.||+.++.+
T Consensus 4 k~~WT~eED~~L~~~v~~~------g~---~~W~~Ia~~l~--------~Rt~~qcr~Rw~~ 48 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKY------GP---KRWSVIAKHLK--------GRIGKQCRERWHN 48 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHH------CT---TCHHHHHTTST--------TCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHh------CC---CcHHHHhhhhc--------CCCHHHHHHHHHh
Confidence 3479999999999987542 21 25999998773 3899999998765
No 33
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=95.23 E-value=0.018 Score=46.40 Aligned_cols=43 Identities=19% Similarity=0.366 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 019413 63 CWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDT 122 (341)
Q Consensus 63 ~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdn 122 (341)
.||.+|-..|+++.... |. ..|..||..|. .||+.||+.|+.+
T Consensus 3 ~Wt~eED~~L~~~v~~~------g~---~~W~~Ia~~~~--------~Rt~~qcr~Rw~~ 45 (107)
T 2k9n_A 3 KFTEEEDLKLQQLVMRY------GA---KDWIRISQLMI--------TRNPRQCRERWNN 45 (107)
T ss_dssp SSCHHHHHHHHHHHHHH------CS---SCHHHHHHHTT--------TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH------CC---CCHHHHhhhcC--------CCCHHHHHHHHHH
Confidence 69999999999987542 21 26999999884 3899999998865
No 34
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=95.21 E-value=0.007 Score=50.61 Aligned_cols=45 Identities=20% Similarity=0.474 Sum_probs=34.9
Q ss_pred CCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHH
Q 019413 62 DCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTVK 124 (341)
Q Consensus 62 ~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdnLK 124 (341)
..||.+|-..||+++... |+ .|..||..|. .||+.||++++.++.
T Consensus 55 ~~Wt~eEd~~L~~~~~~~------G~----~W~~Ia~~l~--------gRt~~~~k~rw~~~l 99 (131)
T 3zqc_A 55 HAWTPEEDETIFRNYLKL------GS----KWSVIAKLIP--------GRTDNAIKNRWNSSI 99 (131)
T ss_dssp SCCCHHHHHHHHHHHHHS------CS----CHHHHTTTST--------TCCHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHH------Cc----CHHHHHHHcC--------CCCHHHHHHHHHHHH
Confidence 479999999999986432 21 4999987662 489999999987654
No 35
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=95.10 E-value=0.016 Score=48.03 Aligned_cols=45 Identities=20% Similarity=0.498 Sum_probs=35.1
Q ss_pred CCCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 019413 61 EDCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDT 122 (341)
Q Consensus 61 ~~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdn 122 (341)
...||.+|...|+++.... |. ..|.+||..|. .||+.||++++.+
T Consensus 27 k~~Wt~eED~~L~~~v~~~------g~---~~W~~Ia~~l~--------~Rt~~qcr~Rw~~ 71 (128)
T 1h8a_C 27 KGPWTKEEDQRVIEHVQKY------GP---KRWSDIAKHLK--------GRIGKQCRERWHN 71 (128)
T ss_dssp CSCCCHHHHHHHHHHHHHT------CS---CCHHHHHHHSS--------SCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH------CC---CCHHHHHHHhc--------CCcHHHHHHHHHH
Confidence 3479999999999886542 21 25999999873 3899999998875
No 36
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=94.54 E-value=0.027 Score=52.65 Aligned_cols=52 Identities=10% Similarity=0.204 Sum_probs=38.5
Q ss_pred CCCCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Q 019413 60 REDCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTV 123 (341)
Q Consensus 60 R~~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdnL 123 (341)
....||.+|-..||++....-. .....+.|.+||..| ..||+.|||++|.++
T Consensus 7 ~k~~FT~EED~~Ile~v~k~Gn----~r~ghk~W~~IAk~L--------pGRT~nsIRnRw~~~ 58 (246)
T 1ign_A 7 NKASFTDEEDEFILDVVRKNPT----RRTTHTLYDEISHYV--------PNHTGNSIRHRFRVY 58 (246)
T ss_dssp -CCCCCHHHHHHHHHHHHTSGG----GTTCSHHHHHHTTTS--------TTSCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHhCc----CccccccHHHHHHHc--------CCCCHHHHHHHHHHH
Confidence 3458999999999998765221 111345699999866 348999999999984
No 37
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=94.04 E-value=0.037 Score=47.41 Aligned_cols=46 Identities=20% Similarity=0.421 Sum_probs=35.5
Q ss_pred CCCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Q 019413 61 EDCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTV 123 (341)
Q Consensus 61 ~~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdnL 123 (341)
...||.+|-..||++.... |. ..|..||..|. .||+.||++++.++
T Consensus 58 ~~~Wt~eEd~~L~~~v~~~------g~---~~W~~Ia~~l~--------~Rt~~qcr~Rw~~~ 103 (159)
T 1h89_C 58 KGPWTKEEDQRVIKLVQKY------GP---KRWSVIAKHLK--------GRIGKQCRERWHNH 103 (159)
T ss_dssp CSCCCHHHHHHHHHHHHHH------CS---CCHHHHHHTST--------TCCHHHHHHHHHHT
T ss_pred CCCCChHHHHHHHHHHHHh------Cc---ccHHHHHHHcC--------CCCHHHHHHHHHHH
Confidence 4589999999999987532 21 25999998773 38999999988663
No 38
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=94.00 E-value=0.03 Score=52.04 Aligned_cols=49 Identities=16% Similarity=0.436 Sum_probs=37.5
Q ss_pred CCCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHH
Q 019413 61 EDCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTVKKKY 127 (341)
Q Consensus 61 ~~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdnLKKrY 127 (341)
...||++|...++++.... | ++|..||+.|- .||..|||+-+-+-|++|
T Consensus 133 s~~WTeEE~~lFleAl~kY------G----KDW~~IAk~Vg--------TKT~~QcKnfY~~~kKRl 181 (235)
T 2iw5_B 133 NARWTTEEQLLAVQAIRKY------G----RDFQAISDVIG--------NKSVVQVKNFFVNYRRRF 181 (235)
T ss_dssp CSSCCHHHHHHHHHHHHHH------S----SCHHHHHHHHS--------SCCHHHHHHHHHHTTTTT
T ss_pred CCCCCHHHHHHHHHHHHHH------C----cCHHHHHHHcC--------CCCHHHHHHHHHHHHHHh
Confidence 4689999999998876541 1 25999999984 389999999876555543
No 39
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.78 E-value=0.083 Score=38.79 Aligned_cols=44 Identities=14% Similarity=0.277 Sum_probs=34.1
Q ss_pred CCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Q 019413 62 DCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTV 123 (341)
Q Consensus 62 ~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdnL 123 (341)
..||++|-..|++++... | +.|..||..|- .||..||....-..
T Consensus 13 ~~WT~eE~~~F~~~~~~~------g----k~w~~Ia~~l~--------~rt~~~~v~~Yy~~ 56 (61)
T 2eqr_A 13 NVWTDHEKEIFKDKFIQH------P----KNFGLIASYLE--------RKSVPDCVLYYYLT 56 (61)
T ss_dssp CSCCHHHHHHHHHHHHHS------T----TCHHHHHHHCT--------TSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHh------C----CCHHHHHHHcC--------CCCHHHHHHHHHHh
Confidence 689999999999987653 2 37999997763 48999998765433
No 40
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=92.48 E-value=0.03 Score=46.69 Aligned_cols=44 Identities=16% Similarity=0.411 Sum_probs=33.7
Q ss_pred CCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Q 019413 63 CWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTV 123 (341)
Q Consensus 63 ~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdnL 123 (341)
.||.+|-..|+++.... |. ..|..||..|- .||+.||+.++.+.
T Consensus 4 ~Wt~eED~~L~~~v~~~------g~---~~W~~Ia~~~~--------~Rt~~qcr~Rw~~~ 47 (131)
T 3zqc_A 4 PFTEAEDDLIREYVKEN------GP---QNWPRITSFLP--------NRSPKQCRERWFNH 47 (131)
T ss_dssp SCCHHHHHHHHHHHHHH------CS---CCGGGGTTSCT--------TSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh------Cc---CCHHHHHHHHC--------CCCHHHHHHHHhhc
Confidence 69999999999876543 21 25999988763 48999999988653
No 41
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=87.40 E-value=0.35 Score=49.22 Aligned_cols=43 Identities=19% Similarity=0.432 Sum_probs=33.8
Q ss_pred CCCCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHH
Q 019413 60 REDCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRI 120 (341)
Q Consensus 60 R~~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKI 120 (341)
....||++|...++++... + | ++|..||+.|.. ||..|||+=+
T Consensus 379 ~~~~WT~eE~~~f~~al~~----y--G----kdw~~IA~~VgT--------KT~~Qvk~fy 421 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRK----Y--G----RDFQAISDVIGN--------KSVVQVKNFF 421 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHH----H--T----TCHHHHHHHHSS--------CCHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHH----H--C----cCHHHHHHHhCC--------CCHHHHHHHH
Confidence 4579999999999987653 1 1 279999999854 7999999843
No 42
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=85.62 E-value=2 Score=34.70 Aligned_cols=59 Identities=14% Similarity=0.321 Sum_probs=46.9
Q ss_pred CCCCCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 019413 59 GREDCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTVKKKYKLEKT 132 (341)
Q Consensus 59 ~R~~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdnLKKrYKkEK~ 132 (341)
..-..||.++-..+|.+...+ | ...+.|..||..|.. ||+.|.++|+..|.+-|.+...
T Consensus 31 e~VvlWTRe~DR~IL~~cQ~~------G-~s~~tFa~iA~~L~N--------ks~nqV~~RFq~Lm~Lf~~~~~ 89 (95)
T 1ug2_A 31 EKVVLWTREADRVILTMCQEQ------G-AQPHTFSVISQQLGN--------KTPVEVSHRFRELMQLFHTACE 89 (95)
T ss_dssp CCCSSSCHHHHHHHHHHHHHT------T-SCTTTHHHHHHHHSS--------CCHHHHHHHHHHHHHHHHHCSS
T ss_pred CEEEEeccccCHHHHHHHHhc------C-CChhHHHHHHHHHcc--------CCHHHHHHHHHHHHHHHHHHhc
Confidence 445689999999999877543 2 224578899999855 7999999999999999988553
No 43
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=84.47 E-value=1.8 Score=34.79 Aligned_cols=59 Identities=17% Similarity=0.170 Sum_probs=44.5
Q ss_pred CCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhh
Q 019413 62 DCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTVKKKYKLEKTK 133 (341)
Q Consensus 62 ~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdnLKKrYKkEK~k 133 (341)
..||.+||..|+++...-.+ .|--|++...-. ....||.++.|+|.-.+.++..+.+..
T Consensus 31 ~~WTkEETd~Lf~L~~~fdl----------RW~vI~DRy~~~---~~~~Rt~EdLK~RyY~v~~~l~~~r~~ 89 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDL----------RFVVIHDRYDHQ---QFKKRSVEDLKERYYHICAKLANVRAV 89 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT----------CHHHHHHHSCTT---TSCCCCHHHHHHHHHHHHHHHHHHTC-
T ss_pred CCCCHHHHHHHHHHHHHhCC----------CeeeehhhhccC---CCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 68999999999998765432 366788877531 114699999999999999988887743
No 44
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=82.93 E-value=0.27 Score=37.80 Aligned_cols=56 Identities=20% Similarity=0.283 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 019413 61 EDCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTVKKKYKLEKT 132 (341)
Q Consensus 61 ~~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdnLKKrYKkEK~ 132 (341)
--.||.++-..+|....++ | ...+.|..||..+ . ||+.|..+|+..|.+-|.+-|.
T Consensus 14 vvlWTReeDR~IL~~cq~~------G-~s~~tfa~iA~~L-n--------ks~~QV~~RF~~Lm~Lf~kSk~ 69 (70)
T 2lr8_A 14 IILWTRNDDRVILLECQKR------G-PSSKTFAYLAAKL-D--------KNPNQVSERFQQLMKLFEKSKC 69 (70)
Confidence 3579999988888766542 2 1235788898777 2 6999999999999999988764
No 45
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=78.78 E-value=1.9 Score=31.51 Aligned_cols=52 Identities=10% Similarity=0.103 Sum_probs=35.3
Q ss_pred CCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHH-HHHhccCCCCCCCCHHHHHHHHHH
Q 019413 62 DCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVAD-IVSSREDYTKAPKTDIQCKNRIDT 122 (341)
Q Consensus 62 ~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~-~vs~r~g~~g~~rT~~QCRnKIdn 122 (341)
..+|.+|-..||+-=.+. ......-..+++|+++|+ .+ ...|+.+||+++.+
T Consensus 3 ~~FT~edD~~L~~~v~~~-~~~~~~~~Gn~iwk~la~~~~--------~~HtwqSwRdRy~k 55 (59)
T 1fex_A 3 IAFTDADDVAILTYVKEN-ARSPSSVTGNALWKAMEKSSL--------TQHSWQSLKDRYLK 55 (59)
T ss_dssp CCCCHHHHHHHHHHHHHT-CCSTTTTTSSHHHHHHHHSCS--------SSCCSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHh-ccccCCCccHHHHHHHHHhHC--------CCCCHHHHHHHHHH
Confidence 478999998888744332 222222335689999998 44 34799999998753
No 46
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=69.43 E-value=17 Score=28.78 Aligned_cols=52 Identities=19% Similarity=0.243 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019413 260 AILKFGEAYEQAESAK------LQQVVEMEKQRMKFAKEMELQRMQFFMKTQLEISQLK 312 (341)
Q Consensus 260 ai~~fgE~yeR~E~ak------~~~~~elEk~Rme~~~elE~~R~~~~~~~Q~ei~~~~ 312 (341)
+|+.-|.+|-+.|.|. +++...|++.|-.+..||+....+| .+-|-+|.+++
T Consensus 14 sir~aggaFgKrEaA~Ee~YfrqkekEqL~~LKkkl~~el~~h~~ei-~~le~~i~rhk 71 (84)
T 1gmj_A 14 AVRDAGGAFGKREQAEEERYFRARAKEQLAALKKHKENEISHHAKEI-ERLQKEIERHK 71 (84)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred cccccCCCcccHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 5666677777777774 4445567777766666777776665 46666665543
No 47
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=67.71 E-value=21 Score=35.36 Aligned_cols=29 Identities=17% Similarity=0.369 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019413 273 SAKLQQVVEMEKQRMKFAKEMELQRMQFF 301 (341)
Q Consensus 273 ~ak~~~~~elEk~Rme~~~elE~~R~~~~ 301 (341)
.+++++...+|+.+.++.+.+|.++.+++
T Consensus 533 ~~~~~~~~~~~~~~~~le~~~~~~~~~~~ 561 (597)
T 3oja_B 533 DAKQKETEDLEQENIALEKQLDNKRAKQA 561 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcchhhHHhhhHHHHHHHhhhhhHHH
Confidence 44556666666788877788887777776
No 48
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.83 E-value=9.1 Score=27.98 Aligned_cols=41 Identities=15% Similarity=0.326 Sum_probs=29.0
Q ss_pred CCCCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHH-HHhccCCCCCCCCHHHHHH
Q 019413 60 REDCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADI-VSSREDYTKAPKTDIQCKN 118 (341)
Q Consensus 60 R~~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~-vs~r~g~~g~~rT~~QCRn 118 (341)
....||++|...++++... .. ++|..|+.. |- .||..||..
T Consensus 8 ~~~~WT~eE~~~Fe~~l~~----yG------Kdf~~I~~~~v~--------~Kt~~~~v~ 49 (63)
T 2yqk_A 8 IEKCWTEDEVKRFVKGLRQ----YG------KNFFRIRKELLP--------NKETGELIT 49 (63)
T ss_dssp CCCSCCHHHHHHHHHHHHH----TC------SCHHHHHHHSCT--------TSCHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHH----hC------ccHHHHHHHHcC--------CCcHHHHHH
Confidence 4579999999888776532 11 258889875 53 389999953
No 49
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=56.93 E-value=6.5 Score=31.16 Aligned_cols=40 Identities=20% Similarity=0.371 Sum_probs=28.9
Q ss_pred CCCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 019413 61 EDCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKN 118 (341)
Q Consensus 61 ~~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRn 118 (341)
.+.||++|...+.+++... .+.|..||..|- .||..||-.
T Consensus 43 ~~~WT~eE~~~F~~~~~~~----------gK~F~~Ia~~l~--------~Kt~~~cV~ 82 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQH----------PKNFGLIASFLE--------RKTVAECVL 82 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHS----------TTCHHHHHHTCT--------TCCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHc----------CCCHHHHHHHcC--------CCCHHHHHH
Confidence 3689999988887776532 236888977653 489999964
No 50
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=50.93 E-value=30 Score=27.73 Aligned_cols=57 Identities=18% Similarity=0.183 Sum_probs=37.5
Q ss_pred CCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHHHHh
Q 019413 62 DCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTVKKKYKLEK 131 (341)
Q Consensus 62 ~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdnLKKrYKkEK 131 (341)
+.||.+||..|+++-.+-.+ .|--|++..... ....||.++.|.|.=.+-++.-+.+
T Consensus 31 ~~WT~eETd~LfdLc~~fdl----------Rw~vI~DRy~~~---~~~~RtvEdLK~RYY~V~~~l~~~r 87 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDL----------RFVVIHDRYDHQ---QFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT----------CHHHHHHHCCTT---TSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHcCC----------CeEEEeeccccC---CCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 58999999999998665322 366677765421 1235887777777666666555544
No 51
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=47.58 E-value=72 Score=26.34 Aligned_cols=53 Identities=15% Similarity=0.225 Sum_probs=32.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019413 252 DSVKLLTQAILKFGEAYEQAESAKLQQVVEMEKQRMKFAKEMELQRMQFFMKTQLEISQL 311 (341)
Q Consensus 252 ~~~~~la~ai~~fgE~yeR~E~ak~~~~~elEk~Rme~~~elE~~R~~~~~~~Q~ei~~~ 311 (341)
.-+..|..-+....|+++. |+.++.+|...-.. ++-++.++++| ++|++|=+-
T Consensus 24 ~ei~~L~~~L~~AEeaL~~----Kq~~idelk~ei~q--~~~~lE~I~vL-kaQv~IY~~ 76 (110)
T 2v4h_A 24 MQLEDLRQQLQQAEEALVA----KQELIDKLKEEAEQ--HKIVMETVPVL-KAQADIYKA 76 (110)
T ss_dssp CHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH--HHHHHTHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH--HHHHHHHHHHH-HHHHHHHHH
Confidence 3566777777666666663 66655555543332 55556678875 889888553
No 52
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=41.62 E-value=3.3 Score=32.08 Aligned_cols=45 Identities=20% Similarity=0.264 Sum_probs=30.6
Q ss_pred CCCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 019413 61 EDCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNR 119 (341)
Q Consensus 61 ~~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnK 119 (341)
...||.+|-.+|-.+-... ..+. -.-|+.||..| ..||..+|+..
T Consensus 20 s~~WT~eE~K~FE~ALa~y----p~~t--pdRWekIA~~V--------pGKT~eEVk~h 64 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFT----NKDT--PDRWKKVAQYV--------KGRTPEEVKKH 64 (74)
T ss_dssp --CCCTTHHHHHHHHTSSS----CSSC--CSSSTTTGGGS--------CSSCHHHHHGG
T ss_pred CCCCCHHHHHHHHHHHHHC----CCCC--CcHHHHHHHHc--------CCCCHHHHHHH
Confidence 3579999999987775322 2222 24699999877 24899999863
No 53
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=39.98 E-value=29 Score=25.84 Aligned_cols=42 Identities=12% Similarity=0.163 Sum_probs=29.0
Q ss_pred CCCCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHH-HHhccCCCCCCCCHHHHHHH
Q 019413 60 REDCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADI-VSSREDYTKAPKTDIQCKNR 119 (341)
Q Consensus 60 R~~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~-vs~r~g~~g~~rT~~QCRnK 119 (341)
....||++|...+.++.... + ++|..|+.. |. .||..||..=
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~y----G------Kdf~~I~~~~v~--------~Kt~~~~v~f 49 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKY----G------KDFNDIRQDFLP--------WKSLTSIIEY 49 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHT----C------SCHHHHHHTTCS--------SSCHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHh----C------ccHHHHHHHHcC--------CCCHHHHHHH
Confidence 44689999998887765321 1 248889873 53 3899999753
No 54
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=34.48 E-value=1.5e+02 Score=22.55 Aligned_cols=68 Identities=13% Similarity=0.153 Sum_probs=47.5
Q ss_pred CCCCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCC------CCCCCHHHHHHHHHHHHHHHHHHhhh
Q 019413 60 REDCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYT------KAPKTDIQCKNRIDTVKKKYKLEKTK 133 (341)
Q Consensus 60 R~~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~------g~~rT~~QCRnKIdnLKKrYKkEK~k 133 (341)
....|+...+..|-..|.. ........-++||..++.-++.. ....|..|+++.+.|=++++|+....
T Consensus 10 ~R~~ft~~ql~~Le~~F~~------~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~~ 83 (95)
T 2cuf_A 10 SRFTWRKECLAVMESYFNE------NQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANI 83 (95)
T ss_dssp CSCCCCHHHHHHHHHHHHH------CSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCcCCHHHHHHHHHHHhc------CCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhhc
Confidence 3468999998888877765 12233345567888887322211 13379999999999999999987654
No 55
>1x9b_A Hypothetical membrane protein TA0354_69_121; alpha protein, structural genomics, protein structure initiative, PSI; NMR {Thermoplasma acidophilum} SCOP: a.10.2.1
Probab=22.95 E-value=57 Score=23.46 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHH
Q 019413 253 SVKLLTQAILKFGEAYE-QAESAKLQ 277 (341)
Q Consensus 253 ~~~~la~ai~~fgE~ye-R~E~ak~~ 277 (341)
-+.||-+.-.+||+.|+ |+|+||.+
T Consensus 24 nL~ELE~is~rlg~~Y~~~LeeaK~k 49 (53)
T 1x9b_A 24 NLNELEALAVRLGKSYRIQLDQAKEK 49 (53)
T ss_dssp HHHHHHHHHHHHCSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHchHHHHHHHHHHHh
Confidence 46788888899999995 77777743
No 56
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=20.70 E-value=2.1e+02 Score=31.04 Aligned_cols=41 Identities=20% Similarity=0.288 Sum_probs=28.9
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019413 270 QAESAKLQQVV--EMEKQRMKFAKEMELQRMQFFMKTQLEISQL 311 (341)
Q Consensus 270 R~E~ak~~~~~--elEk~Rme~~~elE~~R~~~~~~~Q~ei~~~ 311 (341)
|-|..++||.. +||++||.=+-+-|..|.+++ +.|.+.+.+
T Consensus 674 r~~A~~~eQea~g~Lerqki~d~a~aE~~r~~Ll-el~a~s~av 716 (861)
T 2zuo_A 674 KHEAQRLEQEARGRLERQKILDQSEAEKARKELL-ELEAMSMAV 716 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-HHHHhhhHh
Confidence 44444444444 788999988888888988875 666666654
No 57
>2p7n_A Pathogenicity island 1 effector protein; CVR69, structural genomics, PSI-2, protein structure initiative; 2.80A {Chromobacterium violaceum}
Probab=20.34 E-value=94 Score=30.89 Aligned_cols=68 Identities=19% Similarity=0.244 Sum_probs=43.7
Q ss_pred HHHHHHHHHhhhHHhhhcCCcch--HHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhhcc
Q 019413 68 ATGVLIDAWGERYLELSRGNLKQ--KHWKEVADIVSSREDYTKAPKTDIQCKNRIDTVKKKYKLEKTKIM 135 (341)
Q Consensus 68 ET~~LIdaWgdr~~ql~rg~lR~--k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdnLKKrYKkEK~k~~ 135 (341)
.+..+|..=++.|+.+...-.++ +-|+++.+.|+...++....+.+.-++-+.+.|++.|.+.+++..
T Consensus 184 ~Isd~I~nIksdYldvYa~IvK~YTdyyQdfNeaLSklSdyIsAGkDGNkIkFd~~sfk~al~kl~~KYs 253 (407)
T 2p7n_A 184 MISDQIGKIKDNYLGVYENVVGQYTDFYKAFSDILSQMANWIKPGGDGNKVKLNVDALKAALEKLKKDFS 253 (407)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHGGGCC---------CCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeeeecHHHHHHHHHHHHHhhc
Confidence 45667777777777765554443 468888888888767766666666777777899999999988863
No 58
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=20.02 E-value=1.8e+02 Score=27.12 Aligned_cols=37 Identities=16% Similarity=0.366 Sum_probs=28.4
Q ss_pred CCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 019413 86 GNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTVKKKYKLE 130 (341)
Q Consensus 86 g~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdnLKKrYKkE 130 (341)
|.+....|++||+.+-. +|+...|+|+.++-+.|-.+
T Consensus 167 gp~~~~~fk~ia~~~P~--------HT~~SWRdRyrKfl~~~gi~ 203 (246)
T 1ign_A 167 GPIAREFFKHFAEEHAA--------HTENAWRDRFRKFLLAYGID 203 (246)
T ss_dssp CCCCTTHHHHHHHHTTT--------SCHHHHHHHHHHTHHHHCHH
T ss_pred CcchHHHHHHHHHHCCC--------CChhhHHHHHHHHHhhcChH
Confidence 44444589999998744 79999999999888888443
Done!