BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019415
(341 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 169 bits (428), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 118/352 (33%), Positives = 174/352 (49%), Gaps = 52/352 (14%)
Query: 8 KVCVTGGEGFVGSWLIKKLLDKGYIVHTTLRPNLEDKSKVDLLKSLPGAETRLIFFEAEI 67
+VCVTGG GF+GSW+IK LL+ GY V+TT+R + E K V L +LPGA +L FF A++
Sbjct: 3 RVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADL 62
Query: 68 YDPDTFENAIQGCDFVFHVATPLQHIDGYLYKNVVEACVGAAKKIASFCVKSGTVKRLIY 127
+PD+F AI+GC +FH A+P+ + V + V A I CV S TVKR IY
Sbjct: 63 SNPDSFAAAIEGCVGIFHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIY 122
Query: 128 TASVLCASPLKEDGSAGYKDSIDETCYTPPDHPLTCHNEYLRVYIESKMKSEKELLSYGS 187
T+S S +D KD +DE+ ++ D L + Y SK +EK +L +G
Sbjct: 123 TSSGSAVSFNGKD-----KDVLDESDWSDVDL-LRSVKPFGWNYAVSKTLAEKAVLEFG- 175
Query: 188 SXXXXXXXXXXXXXXDTNLPYSSTPVSVIGGLCQLTNNEYVYQTLRDTEE-----ILGK- 241
+ V+ + +V L D+ E +LGK
Sbjct: 176 ---------------------EQNGIDVVTLILPFIVGRFVCPKLPDSIEKALVLVLGKK 214
Query: 242 -------LPLVHIDDVCEAHIFCMEKPSMSGRFFCTNVFVSSAEIASCLQQNYPEFHIKQ 294
+VH+DDV AHI+ +E GR+ C+ V E++ L YPE+ I
Sbjct: 215 EQIGVTRFHMVHVDDVARAHIYLLENSVPGGRYNCSPFIVPIEEMSQLLSAKYPEYQI-- 272
Query: 295 EYLDVPK-REIK------WGGTKLEEKGFEYNYDLKMILDDSIKCGRKSGYL 339
L V + +EIK KL + GF++ Y ++ + DD+I+C ++ GYL
Sbjct: 273 --LTVDELKEIKGARLPDLNTKKLVDAGFDFKYTIEDMFDDAIQCCKEKGYL 322
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 162 bits (410), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 104/336 (30%), Positives = 168/336 (50%), Gaps = 21/336 (6%)
Query: 9 VCVTGGEGFVGSWLIKKLLDKGYIVHTTLRPNLEDKSKVDLLKSLPGAETRLIFFEAEIY 68
VCVTG GF+GSWL+ +LL++GY V T+R + + KV L LP AET L ++A++
Sbjct: 8 VCVTGASGFIGSWLVMRLLERGYTVRATVR-DPTNVKKVKHLLDLPKAETHLTLWKADLA 66
Query: 69 DPDTFENAIQGCDFVFHVATPLQHIDGYLYKNVVEACVGAAKKIASFCVKSGTVKRLIYT 128
D +F+ AI+GC VFHVATP+ V++ + I C + TV+RL++T
Sbjct: 67 DEGSFDEAIKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFT 126
Query: 129 ASVLCASPLKEDGSAGYKDSIDETCYTPPDHPLTCHNEYLR--VYIESKMKSEKELLSYG 186
+S + ++E Y DE+C++ + C + + +Y SK +E+ Y
Sbjct: 127 SSAGTVN-IQEHQLPVY----DESCWSDMEF---CRAKKMTAWMYFVSKTLAEQAAWKYA 178
Query: 187 SSXXXXXXXXXXXXXXDTNLPYSSTPVSVIGGLCQLTNNEYVYQTLRDTEEILGKLPLVH 246
+ SS P S+I L +T NE Y +R + VH
Sbjct: 179 KENNIDFITIIPTLVVGPFI-MSSMPPSLITALSPITGNEAHYSIIRQGQ-------FVH 230
Query: 247 IDDVCEAHIFCMEKPSMSGRFFCTNVFVSSAEIASCLQQNYPEFHIKQEY--LDVPKREI 304
+DD+C AHI+ E P GR+ C++ ++A L++ YPE++I E+ +D + +
Sbjct: 231 LDDLCNAHIYLFENPKAEGRYICSSHDCIILDLAKMLREKYPEYNIPTEFKGVDENLKSV 290
Query: 305 KWGGTKLEEKGFEYNYDLKMILDDSIKCGRKSGYLP 340
+ KL + GFE+ Y L+ + ++ R G LP
Sbjct: 291 CFSSKKLTDLGFEFKYSLEDMFTGAVDTCRAKGLLP 326
>pdb|2RH8|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|B Chain B, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
Length = 338
Score = 158 bits (400), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 102/331 (30%), Positives = 166/331 (50%), Gaps = 8/331 (2%)
Query: 10 CVTGGEGFVGSWLIKKLLDKGYIVHTTLRPNLEDKSKVDLLKSLPGAETRLIFFEAEIYD 69
CV GG GFV S L+K LL KGY V+TT+R + +++ KV L L L F A++ D
Sbjct: 13 CVVGGTGFVASLLVKLLLQKGYAVNTTVR-DPDNQKKVSHLLELQEL-GDLKIFRADLTD 70
Query: 70 PDTFENAIQGCDFVFHVATPLQHIDGYLYKNVVEACVGAAKKIASFCVKSGTVKRLIYTA 129
+FE I GCDFVFHVATP+ ++++ + + C ++ +VKR+I T+
Sbjct: 71 ELSFEAPIAGCDFVFHVATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTS 130
Query: 130 SVLCASPLKEDGSAGYKDSIDETCYTPPDHPLTCHNEYLRVYIESKMKSEKELLSYGSSX 189
S + + DG+ +DE +T + LT Y SK +EK +
Sbjct: 131 SAAAVTINQLDGTGLV---VDEKNWTDIEF-LTSAKPPTWGYPASKTLAEKAAWKFAEEN 186
Query: 190 XXXXXXXXXXXXXDTNLPYSSTPVSVIGGLCQLTNNEYVYQTLRDTEEILGKLPLVHIDD 249
++L S P S+ + +T NE++ ++ + + G + + H++D
Sbjct: 187 NIDLITVIPTLMAGSSL-TSDVPSSIGLAMSLITGNEFLINGMKGMQMLSGSVSIAHVED 245
Query: 250 VCEAHIFCMEKPSMSGRFFCTNVFVSSAEIASCLQQNYPEFHIKQEYLDV-PKREIKWGG 308
VC AHIF EK S SGR+ C S E+A L + YP++ + ++ D PK ++
Sbjct: 246 VCRAHIFVAEKESASGRYICCAANTSVPELAKFLSKRYPQYKVPTDFGDFPPKSKLIISS 305
Query: 309 TKLEEKGFEYNYDLKMILDDSIKCGRKSGYL 339
KL ++GF + Y ++ I D+S++ + G L
Sbjct: 306 EKLVKEGFSFKYGIEEIYDESVEYFKAKGLL 336
>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
Length = 342
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 78/181 (43%), Gaps = 20/181 (11%)
Query: 9 VCVTGGEGFVGSWLIKKLLDKGYIVHTTLRPNLEDKSKVDLLKSLPGAETRLIFFEAEIY 68
V VTG GFV S ++++LL+ GY V T R SK+ L+ A+ F A +
Sbjct: 14 VLVTGANGFVASHVVEQLLEHGYKVRGTAR----SASKLANLQKRWDAKYPGRFETAVVE 69
Query: 69 D---PDTFENAIQGCDFVFHVATPLQHIDGYLYKNVVEACVGAAKKIASFCVKSGTVKRL 125
D ++ I+G V H+A+ + + Y VV +G + +VKR
Sbjct: 70 DMLKQGAYDEVIKGAAGVAHIASVVSFSNK--YDEVVTPAIGGTLNALRAAAATPSVKRF 127
Query: 126 IYTASVLCASPLKEDGSAGYKD-------SIDETCYTPPDHPLTCHNEYLRVYIESKMKS 178
+ T+S + A K + Y D SID+ P P + L VY SK ++
Sbjct: 128 VLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDP----QKSLWVYAASKTEA 183
Query: 179 E 179
E
Sbjct: 184 E 184
>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
pdb|1UJM|B Chain B, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
Length = 342
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 78/181 (43%), Gaps = 20/181 (11%)
Query: 9 VCVTGGEGFVGSWLIKKLLDKGYIVHTTLRPNLEDKSKVDLLKSLPGAETRLIFFEAEIY 68
V VTG GFV S ++++LL+ GY V T R SK+ L+ A+ F A +
Sbjct: 14 VLVTGANGFVASHVVEQLLEHGYKVRGTAR----SASKLANLQKRWDAKYPGRFETAVVE 69
Query: 69 D---PDTFENAIQGCDFVFHVATPLQHIDGYLYKNVVEACVGAAKKIASFCVKSGTVKRL 125
D ++ I+G V H+A+ + + Y VV +G + +VKR
Sbjct: 70 DXLKQGAYDEVIKGAAGVAHIASVVSFSNK--YDEVVTPAIGGTLNALRAAAATPSVKRF 127
Query: 126 IYTASVLCASPLKEDGSAGYKD-------SIDETCYTPPDHPLTCHNEYLRVYIESKMKS 178
+ T+S + A K + Y D SID+ P P + L VY SK ++
Sbjct: 128 VLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDP----QKSLWVYAASKTEA 183
Query: 179 E 179
E
Sbjct: 184 E 184
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 21/136 (15%)
Query: 7 FKVCVTGGEGFVGSWLIKKLLDKGY----------IVHTTLRPNLEDKSKVDLLKSLPGA 56
++ VTGG GF+GS +++LL Y + T N + + VD A
Sbjct: 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVD-------A 53
Query: 57 ETRLIFFEAEIYDPDTFENAIQGCDFVFHVATPLQHIDGYLYKNVV--EACVGAAKKIAS 114
+ RL F +I D ++G D + H A H+D + V E V + +
Sbjct: 54 DPRLRFVHGDIRDAGLLARELRGVDAIVHFAAE-SHVDRSIAGASVFTETNVQGTQTLLQ 112
Query: 115 FCVKSGTVKRLIYTAS 130
V +G V R+++ ++
Sbjct: 113 CAVDAG-VGRVVHVST 127
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase)
From Streptomyces Venezuelae With Nad And Tyd Bound
Length = 337
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 21/136 (15%)
Query: 7 FKVCVTGGEGFVGSWLIKKLLDKGY----------IVHTTLRPNLEDKSKVDLLKSLPGA 56
++ VTGG GF+GS +++LL Y + T N + + VD A
Sbjct: 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVD-------A 53
Query: 57 ETRLIFFEAEIYDPDTFENAIQGCDFVFHVATPLQHIDGYLYKNVV--EACVGAAKKIAS 114
+ RL F +I D ++G D + H A H+D + V E V + +
Sbjct: 54 DPRLRFVHGDIRDAGLLARELRGVDAIVHFAAE-SHVDRSIAGASVFTETNVQGTQTLLQ 112
Query: 115 FCVKSGTVKRLIYTAS 130
V +G V R+++ ++
Sbjct: 113 CAVDAG-VGRVVHVST 127
>pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+
pdb|2Q1S|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nadh
pdb|2Q1T|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
Length = 377
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 5 SNFKVCVTGGEGFVGSWLIKKLLDKGYIVHTTLRPNLEDKSKVDLLKSLPGAETRLIFFE 64
+N V V GG GFVGS L+K+LL+ G + + NL K++ + P F E
Sbjct: 31 ANTNVMVVGGAGFVGSNLVKRLLELG-VNQVHVVDNLLSAEKIN-VPDHPAVR----FSE 84
Query: 65 AEIYDPDTFENAIQGCDFVFHVAT 88
I D + D+VFH+AT
Sbjct: 85 TSITDDALLASLQDEYDYVFHLAT 108
>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN4|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN6|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN6|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN8|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN8|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN9|A Chain A, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GN9|B Chain B, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GNA|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
pdb|2GNA|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
Length = 344
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 68/143 (47%), Gaps = 15/143 (10%)
Query: 6 NFKVCVTGGEGFVGSWLIKKLLD----KGYIVHTTLRPNLEDKSKVDLLKSLPGAETRLI 61
N + +TGG G G ++K+LD K IV++ R L+ ++ + R+
Sbjct: 21 NQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYS--RDELKQSE-----MAMEFNDPRMR 73
Query: 62 FFEAEIYDPDTFENAIQGCDFVFHVATPLQHIDGYLYKNV--VEACVGAAKKIASFCVKS 119
FF ++ D + A++G D H A L+H+ Y + ++ + A + + C+K+
Sbjct: 74 FFIGDVRDLERLNYALEGVDICIHAAA-LKHVPIAEYNPLECIKTNIMGASNVINACLKN 132
Query: 120 GTVKRLIYTASVLCASPLKEDGS 142
+ ++I ++ A+P+ G+
Sbjct: 133 A-ISQVIALSTDKAANPINLYGA 154
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8
Udp-glucose 4- Epimerase Complex With Nad
Length = 311
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 7 FKVCVTGGEGFVGSWLIKKLLDKGYIVHTTLRPNLEDKSKVDLLKSLPGAETRLIFFEAE 66
+V VTGG GF+GS +++ LL +G + + NL + ++ K +P FF +
Sbjct: 1 MRVLVTGGAGFIGSHIVEDLLARG--LEVAVLDNLATGKRENVPKGVP-------FFRVD 51
Query: 67 IYDPDTFENAIQ 78
+ D + E A +
Sbjct: 52 LRDKEGVERAFR 63
>pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUD|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
Length = 351
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 12/128 (9%)
Query: 10 CVTGGEGFVGSWLIKKLLDKGYIVHTTLRPNLEDKSKVDLLKSLPGAE--TRLIFFEAEI 67
+TG GF+GS L++KLL +V + + +D +K+L E +R F E +I
Sbjct: 29 LITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDI 88
Query: 68 YDPDTFENAIQGCDFVFHVATPLQHIDGYLYKNVVEACVGAAKKIASF-----CVKSGTV 122
D T E ++G D V H A G + +++V+ A I F K+ V
Sbjct: 89 RDLTTCEQVMKGVDHVLHQAAL-----GSVPRSIVDPITTNATNITGFLNILHAAKNAQV 143
Query: 123 KRLIYTAS 130
+ Y AS
Sbjct: 144 QSFTYAAS 151
>pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 12/128 (9%)
Query: 10 CVTGGEGFVGSWLIKKLLDKGYIVHTTLRPNLEDKSKVDLLKSLPGAE--TRLIFFEAEI 67
+TG GF+GS L++KLL +V + + +D +K+L E +R F E +I
Sbjct: 23 LITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDI 82
Query: 68 YDPDTFENAIQGCDFVFHVATPLQHIDGYLYKNVVEACVGAAKKIASF-----CVKSGTV 122
D T E ++G D V H A G + +++V+ A I F K+ V
Sbjct: 83 RDLTTCEQVMKGVDHVLHQAAL-----GSVPRSIVDPITTNATNITGFLNILHAAKNAQV 137
Query: 123 KRLIYTAS 130
+ Y AS
Sbjct: 138 QSFTYAAS 145
>pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|B Chain B, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|C Chain C, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|D Chain D, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
Length = 364
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 12/128 (9%)
Query: 10 CVTGGEGFVGSWLIKKLLDKGYIVHTTLRPNLEDKSKVDLLKSLPGAE--TRLIFFEAEI 67
+TG GF+GS L++KLL +V + + +D +K+L E +R F E +I
Sbjct: 42 LITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDI 101
Query: 68 YDPDTFENAIQGCDFVFHVATPLQHIDGYLYKNVVEACVGAAKKIASF-----CVKSGTV 122
D T E ++G D V H A G + +++V+ A I F K+ V
Sbjct: 102 RDLTTCEQVMKGVDHVLHQAAL-----GSVPRSIVDPITTNATNITGFLNILHAAKNAQV 156
Query: 123 KRLIYTAS 130
+ Y AS
Sbjct: 157 QSFTYAAS 164
>pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 12/128 (9%)
Query: 10 CVTGGEGFVGSWLIKKLLDKGYIVHTTLRPNLEDKSKVDLLKSLPGAE--TRLIFFEAEI 67
+TG GF+GS L++KLL +V + + +D +K+L E +R F E +I
Sbjct: 29 LITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDI 88
Query: 68 YDPDTFENAIQGCDFVFHVATPLQHIDGYLYKNVVEACVGAAKKIASF-----CVKSGTV 122
D T E ++G D V H A G + +++V+ A I F K+ V
Sbjct: 89 RDLTTCEQVMKGVDHVLHQAAL-----GSVPRSIVDPITTNATNITGFLNILHAAKNAQV 143
Query: 123 KRLIYTAS 130
+ Y AS
Sbjct: 144 QSFTYAAS 151
>pdb|1EQ2|A Chain A, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|B Chain B, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|C Chain C, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|D Chain D, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|E Chain E, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|F Chain F, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|G Chain G, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|H Chain H, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|I Chain I, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|J Chain J, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
Length = 310
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 9 VCVTGGEGFVGSWLIKKLLDKGYIVHTTLRPNLEDKSK 46
+ VTGG GF+GS ++K L DKG I + NL+D +K
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKG-ITDILVVDNLKDGTK 38
>pdb|2X6T|A Chain A, Agme Bound To Adp-B-Mannose
pdb|2X6T|B Chain B, Agme Bound To Adp-B-Mannose
pdb|2X6T|C Chain C, Agme Bound To Adp-B-Mannose
pdb|2X6T|D Chain D, Agme Bound To Adp-B-Mannose
pdb|2X6T|E Chain E, Agme Bound To Adp-B-Mannose
pdb|2X6T|F Chain F, Agme Bound To Adp-B-Mannose
pdb|2X6T|G Chain G, Agme Bound To Adp-B-Mannose
pdb|2X6T|H Chain H, Agme Bound To Adp-B-Mannose
pdb|2X6T|I Chain I, Agme Bound To Adp-B-Mannose
pdb|2X6T|J Chain J, Agme Bound To Adp-B-Mannose
pdb|2X86|A Chain A, Agme Bound To Adp-b-mannose
pdb|2X86|B Chain B, Agme Bound To Adp-b-mannose
pdb|2X86|C Chain C, Agme Bound To Adp-b-mannose
pdb|2X86|D Chain D, Agme Bound To Adp-b-mannose
pdb|2X86|E Chain E, Agme Bound To Adp-b-mannose
pdb|2X86|F Chain F, Agme Bound To Adp-b-mannose
pdb|2X86|G Chain G, Agme Bound To Adp-b-mannose
pdb|2X86|H Chain H, Agme Bound To Adp-b-mannose
pdb|2X86|I Chain I, Agme Bound To Adp-b-mannose
pdb|2X86|J Chain J, Agme Bound To Adp-b-mannose
pdb|2X86|K Chain K, Agme Bound To Adp-b-mannose
pdb|2X86|L Chain L, Agme Bound To Adp-b-mannose
pdb|2X86|M Chain M, Agme Bound To Adp-b-mannose
pdb|2X86|N Chain N, Agme Bound To Adp-b-mannose
pdb|2X86|O Chain O, Agme Bound To Adp-b-mannose
pdb|2X86|P Chain P, Agme Bound To Adp-b-mannose
pdb|2X86|Q Chain Q, Agme Bound To Adp-b-mannose
pdb|2X86|R Chain R, Agme Bound To Adp-b-mannose
pdb|2X86|S Chain S, Agme Bound To Adp-b-mannose
pdb|2X86|T Chain T, Agme Bound To Adp-b-mannose
Length = 357
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 9 VCVTGGEGFVGSWLIKKLLDKGYIVHTTLRPNLEDKSK 46
+ VTGG GF+GS ++K L DKG I + NL+D +K
Sbjct: 49 IIVTGGAGFIGSNIVKALNDKG-ITDILVVDNLKDGTK 85
>pdb|1QYD|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|C Chain C, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|D Chain D, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 313
Score = 35.0 bits (79), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 55/127 (43%), Gaps = 15/127 (11%)
Query: 1 MDHKSNFKVCVTGGEGFVGSWLIKKLLDKGYIVHTTLRPN-LEDKSKVDLLKSLPGAETR 59
MD KS +V + GG G++G ++ + G+ + RP + + KV +L +
Sbjct: 1 MDKKS--RVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAK 58
Query: 60 LIFFEAEIYDPDTFENAIQGCDFVFHVATPLQHIDGYLYKNVVEACVGAAKKIASFCVKS 119
LI EA + D +A++ D V G L +++E K+ ++
Sbjct: 59 LI--EASLDDHQRLVDALKQVDVVISALA-----GGVLSHHILEQL-----KLVEAIKEA 106
Query: 120 GTVKRLI 126
G +KR +
Sbjct: 107 GNIKRFL 113
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 15/82 (18%)
Query: 7 FKVCVTGGEGFVGSWLIKKLLDKGYIVHTTLRPNLEDKSKVDLLKSLPGAETRLIFFEAE 66
++ VTGG GF+GS L+ KL++ GY V VD+++ G L + +
Sbjct: 1 MRIVVTGGAGFIGSHLVDKLVELGYEVVV-----------VDIVQRDTGGSAELHVRDLK 49
Query: 67 IYDPDTFENAIQGCDFVFHVAT 88
Y ++ I+G D VFH A
Sbjct: 50 DY---SWGAGIKG-DVVFHFAA 67
>pdb|3C3X|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
pdb|3C3X|B Chain B, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 318
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 9/109 (8%)
Query: 8 KVCVTGGEGFVGSWLIKKLLDKGYIVHTTLRPNLEDKSKVDLLKSLPGAETRLIFFEAEI 67
K+ + GG G++G+ ++K L G+ + RPN + +D +SL GA I + E+
Sbjct: 13 KILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSL-GA----IIVKGEL 67
Query: 68 YDPDTFENAIQGCDFVFHVATPLQHIDGYLYKNVVEACVGAAKKIASFC 116
+ + ++ D V Q++D + ++EA + A I F
Sbjct: 68 DEHEKLVELMKKVDVVISALAVPQYLDQF---KILEA-IKVAGNIKRFL 112
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 19/86 (22%)
Query: 7 FKVCVTGGEGFVGSWLIKKLLDKGYIVHTTLRPNLEDKSKVDLLKSLPGAETRLIFFEAE 66
++ VTGG GF+GS L+ KL++ GY +V ++ +L + AE
Sbjct: 1 MRIVVTGGAGFIGSHLVDKLVELGY--------------EVVVVDNLSSGRREFVNPSAE 46
Query: 67 IYDPD----TFENAIQGCDFVFHVAT 88
++ D ++ I+G D VFH A
Sbjct: 47 LHVRDLKDYSWGAGIKG-DVVFHFAA 71
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 72/171 (42%), Gaps = 23/171 (13%)
Query: 4 KSNFKVCVTGGEGFVGSWLIKKLLDKGYIVHTTLRPNLEDKSKVDLLKSLPGAETRLIFF 63
K ++ +TGG GFVGS L KL+ G+ V T+ N K ++ E +
Sbjct: 3 KDRKRILITGGAGFVGSHLTDKLMMDGHEV--TVVDNFFTGRKRNV-------EHWIGHE 53
Query: 64 EAEIYDPDTFENAIQGCDFVFHVATPLQHIDGYLY---KNVVEACVGAAKKIASFCVKSG 120
E+ + D E D ++H+A+P + Y+Y K + +G + G
Sbjct: 54 NFELINHDVVEPLYIEVDQIYHLASPASPPN-YMYNPIKTLKTNTIGTLNML-------G 105
Query: 121 TVKRLIYTASVLCASPLKEDGSAG-YKDSIDETCYTPPDHPLTCHNEYLRV 170
KR+ A +L AS + G + S D + P P C++E RV
Sbjct: 106 LAKRV--GARLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRV 154
>pdb|1RTF|B Chain B, Complex Of Benzamidine With The Catalytic Domain Of Human
Two Chain Tissue Plasminogen Activator [(Tc)-T-Pa]
pdb|1A5H|A Chain A, Catalytic Domain Of Human Two-Chain Tissue Plasminogen
Activator Complex Of A Bis-Benzamidine
pdb|1A5H|B Chain B, Catalytic Domain Of Human Two-Chain Tissue Plasminogen
Activator Complex Of A Bis-Benzamidine
Length = 252
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 252 EAHIFCMEKPSMSGRFFCTNVFVSSAEI---ASCLQQNYPEFHIK----QEYLDVPKRE 303
+A IF + S RF C + +SS I A C Q+ +P H+ + Y VP E
Sbjct: 15 QAAIFAKHRRSPGERFLCGGILISSCWILSAAHCFQERFPPHHLTVILGRTYRVVPGEE 73
>pdb|1BDA|A Chain A, Catalytic Domain Of Human Single Chain Tissue Plasminogen
Activator In Complex With Dansyl-Egr-Cmk
(Dansyl-Glu-Gly-Arg Chloromethyl Ketone)
pdb|1BDA|B Chain B, Catalytic Domain Of Human Single Chain Tissue Plasminogen
Activator In Complex With Dansyl-Egr-Cmk
(Dansyl-Glu-Gly-Arg Chloromethyl Ketone)
Length = 265
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 252 EAHIFCMEKPSMSGRFFCTNVFVSSAEI---ASCLQQNYPEFHIK----QEYLDVPKRE 303
+A IF + S RF C + +SS I A C Q+ +P H+ + Y VP E
Sbjct: 28 QAAIFAKHRRSPGERFLCGGILISSCWILSAAHCFQERFPPHHLTVILGRTYRVVPGEE 86
>pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|C Chain C, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
Length = 333
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 53/134 (39%), Gaps = 24/134 (17%)
Query: 8 KVCVTGGEGFVGSWLIKKLLDKGYIV------HTTLRPNLEDKSKVDLLKSLPGAETRLI 61
KV +TG G +GS + + LL++G V T R +L+D L
Sbjct: 23 KVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKD-------------HPNLT 69
Query: 62 FFEAEIYDPDTFENAIQGC--DFVFHVATPLQHIDGYLYKNVVEACVGAAKKIASFCVKS 119
F E I D I D V H A + D + Y + + CVG + + + K
Sbjct: 70 FVEGSIADHALVNQLIGDLQPDAVVHTAASYKDPDDW-YNDTLTNCVGGSNVVQA--AKK 126
Query: 120 GTVKRLIYTASVLC 133
V R +Y + LC
Sbjct: 127 NNVGRFVYFQTALC 140
>pdb|2R2G|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
pdb|2R2G|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
Length = 318
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 8 KVCVTGGEGFVGSWLIKKLLDKGYIVHTTLRPNLEDKSKVDLLKSL 53
K+ + GG G++G+ ++K L G+ + RPN + +D +SL
Sbjct: 13 KILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSL 58
>pdb|2YY7|A Chain A, Crystal Structure Of Thermolabile L-Threonine
Dehydrogenase From Flavobacterium Frigidimaris Kuc-1
pdb|2YY7|B Chain B, Crystal Structure Of Thermolabile L-Threonine
Dehydrogenase From Flavobacterium Frigidimaris Kuc-1
Length = 312
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 241 KLPLVHIDDVCEAHIFCMEKP----SMSGRFFCTNVFVSSAEIASCLQQNYPEFHIKQEY 296
K+P++++DD +A I M+ P + + + + EIA+ ++++ PEF I E
Sbjct: 210 KMPMMYMDDAIDATINIMKAPVEKIKIHSSYNLAAMSFTPTEIANEIKKHIPEFTITYEP 269
Query: 297 LDVPKREIKWGGT-----KLEEKGFEYNYDLKMILDDSIK 331
K W + E+ +++ +DL+ + D I+
Sbjct: 270 DFRQKIADSWPASIDDSQAREDWDWKHTFDLESMTKDMIE 309
>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3K|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
Length = 348
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 10/88 (11%)
Query: 8 KVCVTGGEGFVGSWLIKKLLDKGYI------VHTTLRPNLEDKSKVDLLKSLPGAETRLI 61
KV VTGG G++GS + +LL+ GY+ H R + ++ L G
Sbjct: 4 KVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVE-- 61
Query: 62 FFEAEIYDPDTFENAIQGCDF--VFHVA 87
F E +I D + + F V H A
Sbjct: 62 FEEMDILDQGALQRLFKKYSFMAVIHFA 89
>pdb|2QX7|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QX7|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 318
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 8 KVCVTGGEGFVGSWLIKKLLDKGYIVHTTLRPNLEDKSKVDLLKSL 53
K+ + GG G++G+ ++K L G+ + RPN + +D +SL
Sbjct: 13 KILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSL 58
>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex
With Nad+
pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
pdb|1EK6|B Chain B, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
Length = 348
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 10/88 (11%)
Query: 8 KVCVTGGEGFVGSWLIKKLLDKGYI------VHTTLRPNLEDKSKVDLLKSLPGAETRLI 61
KV VTGG G++GS + +LL+ GY+ H R + ++ L G
Sbjct: 4 KVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVE-- 61
Query: 62 FFEAEIYDPDTFENAIQGCDF--VFHVA 87
F E +I D + + F V H A
Sbjct: 62 FEEMDILDQGALQRLFKKYSFMAVIHFA 89
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 9/104 (8%)
Query: 6 NFKVCVTGGEGFVGSWLIKKLLDKGYIVHTTLRPNLEDKSKVDLLKSLPGAETRLIFFEA 65
+ K+ VTGG GF+GS I+ +L+K L S LK L + R F +
Sbjct: 3 SMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLED-DPRYTFVKG 61
Query: 66 EIYDPDTFENAIQGCDFVFHVATPLQHIDG-------YLYKNVV 102
++ D + + ++ D V H+A H+D +L+ NV+
Sbjct: 62 DVADYELVKELVRKVDGVVHLAAE-SHVDRSISSPEIFLHSNVI 104
>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
pdb|1HZJ|B Chain B, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
Length = 348
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 10/88 (11%)
Query: 8 KVCVTGGEGFVGSWLIKKLLDKGYI------VHTTLRPNLEDKSKVDLLKSLPGAETRLI 61
KV VTGG G++GS + +LL+ GY+ H R + ++ L G
Sbjct: 4 KVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVE-- 61
Query: 62 FFEAEIYDPDTFENAIQGCDF--VFHVA 87
F E +I D + + F V H A
Sbjct: 62 FEEMDILDQGALQRLFKKYSFMAVIHFA 89
>pdb|2QW8|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QW8|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 314
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 8 KVCVTGGEGFVGSWLIKKLLDKGYIVHTTLRPNLEDKSKVDLLKSL 53
K+ + GG G++G+ ++K L G+ + RPN + +D +SL
Sbjct: 9 KILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSL 54
>pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-N-Acetylgalactosamine
pdb|1SB9|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-Glucose
Length = 352
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 52/127 (40%), Gaps = 12/127 (9%)
Query: 11 VTGGEGFVGSWLIKKLLDKGYIVHTTLRPNLEDKSKVDLLKSLPGAE--TRLIFFEAEIY 68
+TG GF+GS L++ LL V + +D ++SL + + F + +I
Sbjct: 32 ITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIR 91
Query: 69 DPDTFENAIQGCDFVFHVATPLQHIDGYLYKNVVEACVGAAKKIASF-----CVKSGTVK 123
+ D NA G D+V H Q G + +++ + A I F + V+
Sbjct: 92 NLDDCNNACAGVDYVLH-----QAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQ 146
Query: 124 RLIYTAS 130
Y AS
Sbjct: 147 SFTYAAS 153
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 70/171 (40%), Gaps = 23/171 (13%)
Query: 4 KSNFKVCVTGGEGFVGSWLIKKLLDKGYIVHTTLRPNLEDKSKVDLLKSLPGAETRLIFF 63
K ++ +TGG GFVGS L KL G+ V T+ N K ++ E +
Sbjct: 25 KDRKRILITGGAGFVGSHLTDKLXXDGHEV--TVVDNFFTGRKRNV-------EHWIGHE 75
Query: 64 EAEIYDPDTFENAIQGCDFVFHVATPLQHIDGYLY---KNVVEACVGAAKKIASFCVKSG 120
E+ + D E D ++H+A+P + Y Y K + +G + G
Sbjct: 76 NFELINHDVVEPLYIEVDQIYHLASPASPPN-YXYNPIKTLKTNTIGTLNXL-------G 127
Query: 121 TVKRLIYTASVLCASPLKEDGSAG-YKDSIDETCYTPPDHPLTCHNEYLRV 170
KR+ A +L AS + G + S D + P P C++E RV
Sbjct: 128 LAKRV--GARLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRV 176
>pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KEP|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KER|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose
Bound
pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose
Bound
pdb|1KET|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KET|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1OC2|A Chain A, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
pdb|1OC2|B Chain B, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
Length = 348
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Query: 5 SNFK-VCVTGGEGFVGSWLIKKLLDKGYIVHTTLRPNLEDKSKVDLLKSLPGAETRLIFF 63
S FK + VTGG GF+GS + + + VH T+ L L+++ G L+
Sbjct: 2 SQFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVV- 60
Query: 64 EAEIYDPDTFENAIQGCDFVFHVAT 88
+I D + + D + H A
Sbjct: 61 -GDIADAELVDKLAAKADAIVHYAA 84
>pdb|2PZK|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZK|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZL|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZL|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
Length = 330
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 53/129 (41%), Gaps = 8/129 (6%)
Query: 5 SNFKVCVTGGEGFVGSWLIKKLLDKGYIVHTTLRPNLEDKSKVDLLKSLPGAETRLIFFE 64
S+ ++ +TGG G +GS LI+ L +G H L + K ++L + G L E
Sbjct: 19 SHMRILITGGAGCLGSNLIEHWLPQG---HEILVIDNFATGKREVLPPVAG----LSVIE 71
Query: 65 AEIYDPDTFENAIQGCDFVFHVATPLQHIDGYLYKNVVEACVGAAKKIASFCVKSGTVKR 124
+ D E A V + + D + V + +A K+G VKR
Sbjct: 72 GSVTDAGLLERAFDSFKPTHVVHSAAAYKDPDDWAEDAATNVQGSINVAKAASKAG-VKR 130
Query: 125 LIYTASVLC 133
L+ + LC
Sbjct: 131 LLNFQTALC 139
>pdb|2PK3|A Chain A, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
pdb|2PK3|B Chain B, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
Length = 321
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 39/96 (40%), Gaps = 15/96 (15%)
Query: 6 NFKVCVTGGEGFVGSWLIKKLLDKGYIVHTTLRPNLEDKSKVDLLKSLPGAETRLIFFEA 65
+ + +TG GFVG +L L ++ V T R N E K LP E
Sbjct: 12 SMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNN-EAK--------LPNVE----MISL 58
Query: 66 EIYDPDTFENAIQGC--DFVFHVATPLQHIDGYLYK 99
+I D + I D++FH+A D +L K
Sbjct: 59 DIMDSQRVKKVISDIKPDYIFHLAAKSSVKDSWLNK 94
>pdb|3R3J|A Chain A, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|B Chain B, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|C Chain C, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|D Chain D, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|E Chain E, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|F Chain F, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
Length = 456
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 13/93 (13%)
Query: 8 KVCVTGGEGFVGSWLIKKLLDKGYIVHTT-------LRPNLEDKSKVDLLKSLPGAETRL 60
K C+ G G V +L++KL++KG IV T L PN K +++ + + + RL
Sbjct: 240 KKCLVSGSGNVAQYLVEKLIEKGAIVLTMSDSNGYILEPNGFTKEQLNYIMDIKNNQ-RL 298
Query: 61 IFFEAEIYDPDT--FENAIQG---CDFVFHVAT 88
E Y FEN CD F AT
Sbjct: 299 RLKEYLKYSKTAKYFENQKPWNIPCDIAFPCAT 331
>pdb|3A1N|A Chain A, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A1N|B Chain B, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A4V|A Chain A, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A4V|B Chain B, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
Length = 317
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 13/100 (13%)
Query: 242 LPLVHIDDVCEAHIFCME----KPSMSGRFFCTNVFVSSAEIASCLQQNYPEFHI--KQE 295
LP++++ D +A + E K + + T + +E+ S +++ PEF I K++
Sbjct: 205 LPMMYMPDALKALVDLYEADRDKLVLRNGYNVTAYTFTPSELYSKIKERIPEFEIEYKED 264
Query: 296 YLDVPKREIKW-----GGTKLEEKGFEYNYDLKMILDDSI 330
+ D K W E GF YDL +DD I
Sbjct: 265 FRD--KIAATWPESLDSSEASNEWGFSIEYDLDRTIDDMI 302
>pdb|3A9W|A Chain A, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A9W|B Chain B, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3AJR|A Chain A, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
pdb|3AJR|B Chain B, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
Length = 317
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 13/100 (13%)
Query: 242 LPLVHIDDVCEAHIFCME----KPSMSGRFFCTNVFVSSAEIASCLQQNYPEFHI--KQE 295
LP++++ D +A + E K + + T + +E+ S +++ PEF I K++
Sbjct: 205 LPMMYMPDALKALVDLYEADRDKLVLRNGYNVTAYTFTPSELYSKIKERIPEFEIEYKED 264
Query: 296 YLDVPKREIKW-----GGTKLEEKGFEYNYDLKMILDDSI 330
+ D K W E GF YDL +DD I
Sbjct: 265 FRD--KIAATWPESLDSSEASNEWGFSIEYDLDRTIDDMI 302
>pdb|3DHN|A Chain A, Crystal Structure Of The Putative Epimerase Q89z24_bactn
From Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Consortium Target Btr310
Length = 227
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 8 KVCVTGGEGFVGSWLIKKLLDKGYIVHTTLR 38
K+ + G GFVGS L+ + L++G+ V +R
Sbjct: 6 KIVLIGASGFVGSALLNEALNRGFEVTAVVR 36
>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
Length = 313
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 13/123 (10%)
Query: 9 VCVTGGEGFVGSWLIKKLLDKGYIVHTTLRPNLEDKSKVDLLKSLPGAETRLIFFEAEIY 68
+ VTGG GF+GS ++ KL + IV + NL + + RL+ +A++
Sbjct: 4 IVVTGGAGFIGSHVVDKLSESNEIV---VIDNLSSGN-----EEFVNEAARLV--KADLA 53
Query: 69 DPDTFENAIQGCDFVFHVAT-PLQHIDGYLYKNVVEACVGAAKKIASFCVKSGTVKRLIY 127
D ++ ++G + V+H+A P I + V A ++ K+G V R+++
Sbjct: 54 -ADDIKDYLKGAEEVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAG-VSRIVF 111
Query: 128 TAS 130
T++
Sbjct: 112 TST 114
>pdb|3I52|A Chain A, Ternary Complex Structure Of Leucoanthocyanidin
Reductase From Vitis Vinifera
pdb|3I5M|A Chain A, Structure Of The Apo Form Of Leucoanthocyanidin
Reductase From Vitis Vinifera
pdb|3I6I|A Chain A, Structure Of The Binary Complex Leucoanthocyanidin
Reductase - Nadph From Vitis Vinifera
pdb|3I6Q|A Chain A, Structure Of The Binary Complex Leucoanthocyanidin
Reductase-Nadph From Vitis Vinifera
Length = 346
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 8 KVCVTGGEGFVGSWLIKKLLDKGYIVHTTLRPNLEDKSKVDLLKSL 53
+V + G GF+G ++ LD + RP SK + K+L
Sbjct: 12 RVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKAL 57
>pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site.
pdb|2C54|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site
Length = 379
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 59/139 (42%), Gaps = 25/139 (17%)
Query: 6 NFKVCVTGGEGFVGSWLIKKLLDKG-YIVHTTLRPNLEDKSKVDLLKSLPGAETRLIFFE 64
N K+ +TG GF+ S + ++L +G Y++ + + N + D+ E
Sbjct: 29 NLKISITGAGGFIASHIARRLKHEGHYVIASDWKKN--EHMTEDMFCD-----------E 75
Query: 65 AEIYDPDTFENAI---QGCDFVFHVATPLQHIDGYLYKNVVEACVGAAKKIASF----CV 117
+ D EN + +G D VF++A + + G++ N + + + SF
Sbjct: 76 FHLVDLRVMENCLKVTEGVDHVFNLAADMGGM-GFIQSN--HSVIMYNNTMISFNMIEAA 132
Query: 118 KSGTVKRLIYTASVLCASP 136
+ +KR Y AS C P
Sbjct: 133 RINGIKRFFY-ASSACIYP 150
>pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active
Site.
pdb|2C5E|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active Site
Length = 379
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 59/139 (42%), Gaps = 25/139 (17%)
Query: 6 NFKVCVTGGEGFVGSWLIKKLLDKG-YIVHTTLRPNLEDKSKVDLLKSLPGAETRLIFFE 64
N K+ +TG GF+ S + ++L +G Y++ + + N + D+ E
Sbjct: 29 NLKISITGAGGFIASHIARRLKHEGHYVIASDWKKN--EHMTEDMFCD-----------E 75
Query: 65 AEIYDPDTFENAI---QGCDFVFHVATPLQHIDGYLYKNVVEACVGAAKKIASF----CV 117
+ D EN + +G D VF++A + + G++ N + + + SF
Sbjct: 76 FHLVDLRVMENCLKVTEGVDHVFNLAADMGGM-GFIQSN--HSVIMYNNTMISFNMIEAA 132
Query: 118 KSGTVKRLIYTASVLCASP 136
+ +KR Y AS C P
Sbjct: 133 RINGIKRFFY-ASSACIYP 150
>pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site.
pdb|2C59|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site
Length = 379
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 59/139 (42%), Gaps = 25/139 (17%)
Query: 6 NFKVCVTGGEGFVGSWLIKKLLDKG-YIVHTTLRPNLEDKSKVDLLKSLPGAETRLIFFE 64
N K+ +TG GF+ S + ++L +G Y++ + + N + D+ E
Sbjct: 29 NLKISITGAGGFIASHIARRLKHEGHYVIASDWKKN--EHMTEDMFCD-----------E 75
Query: 65 AEIYDPDTFENAI---QGCDFVFHVATPLQHIDGYLYKNVVEACVGAAKKIASF----CV 117
+ D EN + +G D VF++A + + G++ N + + + SF
Sbjct: 76 FHLVDLRVMENCLKVTEGVDHVFNLAADMGGM-GFIQSN--HSVIMYNNTMISFNMIEAA 132
Query: 118 KSGTVKRLIYTASVLCASP 136
+ +KR Y AS C P
Sbjct: 133 RINGIKRFFY-ASSACIYP 150
>pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
pdb|2C5A|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
Length = 379
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 59/139 (42%), Gaps = 25/139 (17%)
Query: 6 NFKVCVTGGEGFVGSWLIKKLLDKG-YIVHTTLRPNLEDKSKVDLLKSLPGAETRLIFFE 64
N K+ +TG GF+ S + ++L +G Y++ + + N + D+ E
Sbjct: 29 NLKISITGAGGFIASHIARRLKHEGHYVIASDWKKN--EHMTEDMFCD-----------E 75
Query: 65 AEIYDPDTFENAI---QGCDFVFHVATPLQHIDGYLYKNVVEACVGAAKKIASF----CV 117
+ D EN + +G D VF++A + + G++ N + + + SF
Sbjct: 76 FHLVDLRVMENCLKVTEGVDHVFNLAADMGGM-GFIQSN--HSVIMYNNTMISFNMIEAA 132
Query: 118 KSGTVKRLIYTASVLCASP 136
+ +KR Y AS C P
Sbjct: 133 RINGIKRFFY-ASSACIYP 150
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 10/84 (11%)
Query: 9 VCVTGGEGFVGSWLIKKLLDKGY--IVHTTLRPNLEDK-SKVDLLKSLPGAETRLIFFEA 65
V VTGG G++GS + +L++ GY +V L + D +++++L + + F+E
Sbjct: 14 VLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVL-----TKHHIPFYEV 68
Query: 66 EIYDPDTFENAIQ--GCDFVFHVA 87
++ D E + D V H A
Sbjct: 69 DLCDRKGLEKVFKEYKIDSVIHFA 92
>pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
pdb|3VPS|B Chain B, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
Length = 321
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 60/302 (19%), Positives = 110/302 (36%), Gaps = 63/302 (20%)
Query: 8 KVCVTGGEGFVGSWLIKKLLDKGYIVHTTLRPNLEDKSKVDLLKSLP--GAETRLIFFEA 65
++ +TGG GF+G L + L+ G E+ + +D L+ P E F E
Sbjct: 9 RILITGGAGFIGGHLARALVASG-----------EEVTVLDDLRVPPMIPPEGTGKFLEK 57
Query: 66 EIYDPDTFENAIQGCDFVFHVAT----------PLQHIDGYLYKNVVEACVGAAKKIASF 115
+ + + E + V+H+A+ PL ++D V + + + +
Sbjct: 58 PVLELE--ERDLSDVRLVYHLASHKSVPRSFKQPLDYLDN----------VDSGRHLLAL 105
Query: 116 CVKSGTVKRLIYTASVLCASPLKEDGSAGYKDSIDETCYTPPDHPLTCHNEYLRVYIESK 175
C G K V+ S + G A +T TP D PL+ + Y +
Sbjct: 106 CTSVGVPK-------VVVGSTCEVYGQA-------DTLPTPEDSPLSPRSPY------AA 145
Query: 176 MKSEKELLSYGSSXXXXXXXXXXXXXXDTNLPYSSTPVSVIGGLCQ--LTNNEYVYQTLR 233
K E+++ + P P +++ LC LT NE +
Sbjct: 146 SKVGLEMVAGAHQRASVAPEVGIVRFFNVYGP-GERPDALVPRLCANLLTRNELPVEG-- 202
Query: 234 DTEEILGKLPLVHIDDVCEAHIFCMEKPSMSGRFFCTNVFVSSAEIASCLQQNYPEFHIK 293
D E+ + +I DV + + +P S F + +S ++ LQ P +
Sbjct: 203 DGEQ---RRDFTYITDVVDKLVALANRPLPSVVNFGSGQSLSVNDVIRILQATSPAAEVA 259
Query: 294 QE 295
++
Sbjct: 260 RK 261
>pdb|3M2P|A Chain A, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|B Chain B, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|C Chain C, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|D Chain D, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|E Chain E, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|F Chain F, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
Length = 311
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/107 (20%), Positives = 42/107 (39%), Gaps = 21/107 (19%)
Query: 7 FKVCVTGGEGFVGSWLIKKLLDKGYIVHTTLRPNLEDKSKVDLLKSLPGAETRLIFFEAE 66
K+ VTGG GF+G ++++ + + G + + L +S+ +
Sbjct: 3 LKIAVTGGTGFLGQYVVESIKNDG-------------NTPIILTRSIGNKAINDYEYRVS 49
Query: 67 IYDPDTFENAIQGCDFVFHVATPLQ--------HIDGYLYKNVVEAC 105
Y + N + D V H+A H + L +N+ +AC
Sbjct: 50 DYTLEDLINQLNDVDAVVHLAATRGSQGKISEFHDNEILTQNLYDAC 96
>pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|B Chain B, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|C Chain C, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|D Chain D, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|E Chain E, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|F Chain F, Crystal Structure Of Udp-Glucose 4-Epimerase
Length = 330
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 9 VCVTGGEGFVGSWLIKKLLDKGY--IVHTTLRPNLED 43
+ + GG G++GS +KKL+D+G +V L+ ED
Sbjct: 4 ILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHED 40
>pdb|1A5I|A Chain A, Catalytic Domain Of Vampire Bat (Desmodus Rotundus) Saliva
Plasminogen Activator In Complex With Egr-Cmk
(Glu-Gly-Arg Chloromethyl Ketone)
Length = 265
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 14/99 (14%)
Query: 252 EAHIFCMEKPSMSGRFFCTNVFVSSAEI---ASCLQQNYPEFHIK----QEYLDVPKREI 304
+A IF + S RF C + +SS + A C Q++Y +K + Y P E
Sbjct: 28 QAAIFAQNRRSSGERFLCGGILISSCWVLTAAHCFQESYLPDQLKVVLGRTYRVKPGEEE 87
Query: 305 KWGGTK--LEEKGFE---YNYDLKMIL--DDSIKCGRKS 336
+ K + K F+ YN D+ ++ DS +C ++S
Sbjct: 88 QTFKVKKYIVHKEFDDDTYNNDIALLQLKSDSPQCAQES 126
>pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli
pdb|1BXK|B Chain B, Dtdp-Glucose 4,6-Dehydratase From E. Coli
Length = 355
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 8 KVCVTGGEGFVGSWLIKKLLDK 29
K+ +TGG GF+GS L++ ++++
Sbjct: 3 KILITGGAGFIGSALVRYIINE 24
>pdb|3QFK|A Chain A, 2.05 Angstrom Crystal Structure Of Putative
5'-Nucleotidase From Staphylococcus Aureus In Complex
With Alpha-Ketoglutarate
Length = 527
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 295 EYLDVPKREIKWGGTKLEEKGFEYNYDLKMILDDSIKCGRKSG 337
EY DV E+ LE K +NYD+ + +I GR G
Sbjct: 409 EYFDVKNDEVSVSADFLEPKPQHFNYDIYGGVSYTIHVGRPKG 451
>pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From
Salmonella Typhi
pdb|1WVG|B Chain B, Structure Of Cdp-D-Glucose 4,6-Dehydratase From
Salmonella Typhi
Length = 359
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 8 KVCVTGGEGFVGSWLIKKLLDKGYIV 33
+V VTG GF GSWL L + G IV
Sbjct: 11 RVFVTGHTGFKGSWLSLWLTEMGAIV 36
>pdb|1T2A|A Chain A, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|B Chain B, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|C Chain C, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|D Chain D, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
Length = 375
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 11 VTGGEGFVGSWLIKKLLDKGYIVHTTLR 38
+TG G GS+L + LL+KGY VH +R
Sbjct: 29 ITGITGQDGSYLAEFLLEKGYEVHGIVR 56
>pdb|1RPN|A Chain A, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|B Chain B, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|C Chain C, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|D Chain D, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
Length = 335
Score = 27.7 bits (60), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 9 VCVTGGEGFVGSWLIKKLLDKGYIVH 34
VTG G G++L K LL+KGY VH
Sbjct: 17 ALVTGITGQDGAYLAKLLLEKGYRVH 42
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,679,738
Number of Sequences: 62578
Number of extensions: 440251
Number of successful extensions: 958
Number of sequences better than 100.0: 71
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 874
Number of HSP's gapped (non-prelim): 84
length of query: 341
length of database: 14,973,337
effective HSP length: 100
effective length of query: 241
effective length of database: 8,715,537
effective search space: 2100444417
effective search space used: 2100444417
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)