BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019416
         (341 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
           Iii Effector Xcv3220 (Xopl)
          Length = 328

 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 80/174 (45%), Gaps = 24/174 (13%)

Query: 138 LESLEVDGCSSLFSLP--INQLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVGPEGESS 195
           L  L +  C  L  LP  +    A+  H  +VN  +L+   E + IR+      P   ++
Sbjct: 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL--EWTGIRSL-----PASIAN 204

Query: 196 LENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPE--GGLPNT 253
           L+N+ S   L++R         L  L   +H+   L  L +  C +L ++P   GG    
Sbjct: 205 LQNLKS---LKIRNSP------LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGG--RA 253

Query: 254 SLTSLLISECENLMSLPHQIHKATSLQDLSVSGCPSLMSFPH--GGLPPNLISL 305
            L  L++ +C NL++LP  IH+ T L+ L + GC +L   P     LP N I L
Sbjct: 254 PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL 307



 Score = 40.0 bits (92), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 64/150 (42%), Gaps = 35/150 (23%)

Query: 218 LEFLPEDMHNFTDLNLLSISNCPSLESFPE-----------GGLPN--------TSLTSL 258
           L  LP  + +   L  LSI  CP L   PE            GL N        T + SL
Sbjct: 139 LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL 198

Query: 259 --LISECENLMSLPHQ----------IHKATSLQDLSVSGCPSLMSFP--HGGLPPNLIS 304
              I+  +NL SL  +          IH    L++L + GC +L ++P   GG  P L  
Sbjct: 199 PASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAP-LKR 257

Query: 305 LGIIDCENLIPLSQWELHKLKHLNKYTILG 334
           L + DC NL+ L   ++H+L  L K  + G
Sbjct: 258 LILKDCSNLLTLP-LDIHRLTQLEKLDLRG 286


>pdb|4IF8|A Chain A, Structure Of Vaspin
 pdb|4IF8|B Chain B, Structure Of Vaspin
          Length = 414

 Score = 30.4 bits (67), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 5/76 (6%)

Query: 14  QAPVPKNFLALALFPDEDKILGIRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINK 73
           + P  KN  A+ + PDE K+  +  G     L++D  S   + L   +   +V +L +  
Sbjct: 261 EIPYQKNITAIFILPDEGKLKHLEKG-----LQVDTFSRWKTLLSRRVVDVSVPRLHMTG 315

Query: 74  CPDLEVLLHRMAYTSL 89
             DL+  L  +  + +
Sbjct: 316 TFDLKKTLSYIGVSKI 331


>pdb|3RGC|A Chain A, The Virulence Factor Peb4 And The Periplasmic Protein
           Cj1289 Are Two Structurally Related Sura-Like Chaperones
           In The Human Pathogen Campylobacter Jejuni
 pdb|3RGC|B Chain B, The Virulence Factor Peb4 And The Periplasmic Protein
           Cj1289 Are Two Structurally Related Sura-Like Chaperones
           In The Human Pathogen Campylobacter Jejuni
          Length = 252

 Score = 28.1 bits (61), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 12/131 (9%)

Query: 23  ALALFPDEDKILGIRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEV--L 80
           A+A+  D++ I      +T+++L+ID   +L   +  ++  + +KQL I    DLE+   
Sbjct: 2   AIAVVVDKEPITTYDIDQTMKALKIDRNKALGVLINEKMEISQMKQLGI-VVNDLELDDA 60

Query: 81  LHRM-AYTSLEYLEFSSCLFFSNSKQDYFPTTLKRLKICDCTNAELILKVLMDQKGLALE 139
           +++M A        F + L   N   + F T  K+    D    +L  K+      +A  
Sbjct: 61  INKMLAQNKTTLNAFKANLKSKNQSYEQFRTNFKK----DLEKRKLYEKIA----SMAKT 112

Query: 140 SLEVDGCSSLF 150
               DG    F
Sbjct: 113 DFSDDGAKKFF 123


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.136    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,620,905
Number of Sequences: 62578
Number of extensions: 367576
Number of successful extensions: 809
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 800
Number of HSP's gapped (non-prelim): 13
length of query: 341
length of database: 14,973,337
effective HSP length: 100
effective length of query: 241
effective length of database: 8,715,537
effective search space: 2100444417
effective search space used: 2100444417
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)