Query 019416
Match_columns 341
No_of_seqs 127 out of 1745
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 09:17:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019416.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019416hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.9 2.7E-22 5.8E-27 208.7 21.1 285 39-340 610-907 (1153)
2 PLN03210 Resistant to P. syrin 99.9 2.2E-20 4.7E-25 194.5 19.7 281 35-340 583-883 (1153)
3 PLN00113 leucine-rich repeat r 99.8 5.1E-19 1.1E-23 183.0 16.4 102 38-145 138-245 (968)
4 PLN00113 leucine-rich repeat r 99.8 4.4E-19 9.4E-24 183.5 15.6 284 36-334 89-389 (968)
5 KOG4194 Membrane glycoprotein 99.7 2.4E-17 5.1E-22 151.5 3.9 301 16-334 75-425 (873)
6 KOG4194 Membrane glycoprotein 99.6 1.6E-15 3.4E-20 139.6 3.3 249 64-334 78-350 (873)
7 KOG0444 Cytoskeletal regulator 99.5 1.1E-15 2.4E-20 141.8 -4.1 277 34-334 26-325 (1255)
8 PRK15387 E3 ubiquitin-protein 99.5 2.6E-12 5.7E-17 126.5 16.9 248 40-334 201-454 (788)
9 KOG0444 Cytoskeletal regulator 99.4 3.1E-15 6.7E-20 138.8 -4.1 105 207-314 270-376 (1255)
10 PRK15387 E3 ubiquitin-protein 99.4 5.9E-12 1.3E-16 124.1 14.7 118 39-176 241-358 (788)
11 KOG0472 Leucine-rich repeat pr 99.4 1.9E-15 4.1E-20 133.5 -8.7 280 38-335 181-538 (565)
12 PRK15370 E3 ubiquitin-protein 99.4 3.7E-12 8E-17 125.9 10.9 122 40-177 178-300 (754)
13 PRK15370 E3 ubiquitin-protein 99.2 3.8E-11 8.2E-16 118.9 10.0 222 40-311 199-426 (754)
14 KOG0472 Leucine-rich repeat pr 99.1 4.1E-13 8.9E-18 118.9 -9.4 245 40-310 45-307 (565)
15 KOG0618 Serine/threonine phosp 99.1 5.1E-12 1.1E-16 122.3 -4.4 104 205-313 383-489 (1081)
16 KOG0618 Serine/threonine phosp 99.1 8.6E-12 1.9E-16 120.8 -3.0 275 34-335 193-486 (1081)
17 KOG4341 F-box protein containi 98.9 2.1E-11 4.5E-16 108.7 -5.0 256 37-314 161-440 (483)
18 KOG4341 F-box protein containi 98.9 5.7E-11 1.2E-15 105.9 -2.7 267 64-340 138-440 (483)
19 KOG4658 Apoptotic ATPase [Sign 98.8 1.4E-09 2.9E-14 109.7 3.1 81 36-119 567-651 (889)
20 KOG0617 Ras suppressor protein 98.7 6.9E-10 1.5E-14 87.9 -3.7 126 34-168 27-159 (264)
21 KOG0617 Ras suppressor protein 98.7 6.9E-10 1.5E-14 87.9 -3.8 148 136-310 33-183 (264)
22 PRK15386 type III secretion pr 98.6 1.6E-07 3.5E-12 85.9 9.6 32 277-310 156-187 (426)
23 PRK15386 type III secretion pr 98.6 4E-07 8.8E-12 83.3 10.3 137 81-262 48-186 (426)
24 cd00116 LRR_RI Leucine-rich re 98.5 5.6E-08 1.2E-12 87.9 2.7 83 37-121 20-119 (319)
25 cd00116 LRR_RI Leucine-rich re 98.4 2.3E-07 5E-12 83.9 4.9 246 60-334 19-316 (319)
26 KOG4237 Extracellular matrix p 98.4 2.2E-08 4.7E-13 89.2 -1.9 86 223-311 268-357 (498)
27 KOG4237 Extracellular matrix p 98.4 6.4E-09 1.4E-13 92.4 -6.3 259 8-286 56-355 (498)
28 KOG4658 Apoptotic ATPase [Sign 98.4 2.4E-07 5.1E-12 93.7 3.9 269 37-340 542-843 (889)
29 KOG3207 Beta-tubulin folding c 98.3 7.2E-07 1.6E-11 80.6 4.1 126 38-170 119-257 (505)
30 KOG2120 SCF ubiquitin ligase, 98.2 5.8E-08 1.3E-12 83.5 -4.7 176 42-265 187-375 (419)
31 PF14580 LRR_9: Leucine-rich r 98.1 1.4E-06 3.1E-11 71.1 3.0 120 206-331 20-146 (175)
32 KOG3207 Beta-tubulin folding c 98.1 1.3E-06 2.9E-11 78.9 1.7 81 86-169 120-207 (505)
33 PF14580 LRR_9: Leucine-rich r 97.9 9E-06 1.9E-10 66.4 4.1 100 64-170 19-124 (175)
34 KOG2120 SCF ubiquitin ligase, 97.9 7E-07 1.5E-11 77.0 -3.2 134 36-172 206-351 (419)
35 KOG1259 Nischarin, modulator o 97.8 5.1E-06 1.1E-10 71.9 0.5 43 77-121 174-225 (490)
36 PF13855 LRR_8: Leucine rich r 97.8 3.1E-05 6.8E-10 51.6 4.2 54 40-97 1-59 (61)
37 COG4886 Leucine-rich repeat (L 97.7 4.9E-05 1.1E-09 71.0 5.4 169 60-264 112-288 (394)
38 KOG0532 Leucine-rich repeat (L 97.7 1E-06 2.2E-11 82.2 -6.0 166 39-240 74-245 (722)
39 KOG1947 Leucine rich repeat pr 97.6 5E-06 1.1E-10 79.5 -3.4 36 279-314 403-441 (482)
40 KOG1259 Nischarin, modulator o 97.6 1.2E-05 2.7E-10 69.6 -0.9 122 37-170 281-410 (490)
41 PF13855 LRR_8: Leucine rich r 97.5 0.00011 2.3E-09 49.0 3.6 54 64-121 1-60 (61)
42 KOG1947 Leucine rich repeat pr 97.5 8.4E-06 1.8E-10 77.9 -3.3 59 281-340 380-441 (482)
43 PLN03150 hypothetical protein; 97.4 0.00033 7.2E-09 69.3 6.9 98 42-146 420-525 (623)
44 COG4886 Leucine-rich repeat (L 97.4 0.00019 4.2E-09 67.0 4.7 171 37-242 113-290 (394)
45 PLN03150 hypothetical protein; 97.4 0.00046 9.9E-09 68.3 7.2 108 207-314 420-529 (623)
46 KOG0532 Leucine-rich repeat (L 97.3 1.6E-05 3.5E-10 74.4 -2.8 186 91-311 79-271 (722)
47 KOG3665 ZYG-1-like serine/thre 97.3 9.2E-05 2E-09 73.4 2.1 125 39-168 121-259 (699)
48 KOG1909 Ran GTPase-activating 97.3 8.6E-06 1.9E-10 71.8 -4.8 15 37-51 27-41 (382)
49 PF12799 LRR_4: Leucine Rich r 97.0 0.0012 2.5E-08 40.7 3.6 40 253-294 1-40 (44)
50 KOG0531 Protein phosphatase 1, 96.8 0.00034 7.3E-09 65.9 0.6 81 36-121 91-173 (414)
51 KOG0531 Protein phosphatase 1, 96.8 0.00025 5.5E-09 66.7 -0.9 56 62-121 93-151 (414)
52 PF12799 LRR_4: Leucine Rich r 96.6 0.002 4.3E-08 39.6 2.8 34 40-74 1-34 (44)
53 KOG1859 Leucine-rich repeat pr 96.4 6.5E-05 1.4E-09 72.5 -7.3 99 206-311 188-290 (1096)
54 KOG3665 ZYG-1-like serine/thre 96.3 0.0014 3E-08 65.2 1.1 106 37-145 145-259 (699)
55 KOG1859 Leucine-rich repeat pr 96.2 0.00029 6.4E-09 68.1 -3.9 191 38-264 82-290 (1096)
56 KOG3864 Uncharacterized conser 95.9 0.0013 2.9E-08 54.0 -1.1 83 253-338 101-188 (221)
57 KOG2982 Uncharacterized conser 95.3 0.013 2.8E-07 51.3 2.5 79 39-121 44-132 (418)
58 KOG1909 Ran GTPase-activating 94.9 0.012 2.6E-07 52.4 1.5 12 86-97 212-223 (382)
59 KOG1644 U2-associated snRNP A' 94.7 0.073 1.6E-06 44.1 5.4 98 207-309 44-149 (233)
60 KOG2739 Leucine-rich acidic nu 94.6 0.02 4.2E-07 49.1 1.9 102 38-146 41-153 (260)
61 KOG2123 Uncharacterized conser 94.5 0.0031 6.7E-08 54.5 -3.1 79 35-118 36-125 (388)
62 KOG1644 U2-associated snRNP A' 94.4 0.081 1.8E-06 43.8 4.9 35 86-121 87-124 (233)
63 KOG2739 Leucine-rich acidic nu 93.3 0.047 1E-06 46.8 1.9 79 86-170 42-127 (260)
64 KOG2123 Uncharacterized conser 93.2 0.0027 5.8E-08 54.9 -5.7 81 38-124 17-102 (388)
65 KOG3864 Uncharacterized conser 93.2 0.021 4.5E-07 47.2 -0.6 57 63-120 124-186 (221)
66 KOG2982 Uncharacterized conser 93.1 0.085 1.8E-06 46.3 3.1 83 34-121 91-184 (418)
67 PF00560 LRR_1: Leucine Rich R 92.0 0.1 2.2E-06 26.6 1.4 19 254-273 1-19 (22)
68 PF13504 LRR_7: Leucine rich r 89.9 0.26 5.7E-06 23.3 1.6 16 40-56 1-16 (17)
69 KOG4579 Leucine-rich repeat (L 89.6 0.033 7.1E-07 43.3 -2.7 87 206-296 54-141 (177)
70 PF13306 LRR_5: Leucine rich r 86.9 4.7 0.0001 30.5 7.9 98 203-308 10-111 (129)
71 PF13306 LRR_5: Leucine rich r 86.8 4.5 9.9E-05 30.6 7.8 78 225-308 8-89 (129)
72 KOG4579 Leucine-rich repeat (L 86.2 0.038 8.3E-07 42.9 -4.1 86 207-295 29-117 (177)
73 smart00367 LRR_CC Leucine-rich 82.9 0.59 1.3E-05 24.8 0.8 15 325-340 2-16 (26)
74 COG5238 RNA1 Ran GTPase-activa 77.5 3.6 7.8E-05 36.1 4.1 130 35-169 87-252 (388)
75 smart00369 LRR_TYP Leucine-ric 63.0 5.4 0.00012 20.8 1.4 16 278-294 3-18 (26)
76 smart00370 LRR Leucine-rich re 63.0 5.4 0.00012 20.8 1.4 16 278-294 3-18 (26)
77 PF05725 FNIP: FNIP Repeat; I 56.2 24 0.00052 21.2 3.7 32 277-309 12-43 (44)
78 PF13516 LRR_6: Leucine Rich r 55.1 9.5 0.00021 19.4 1.5 11 40-50 2-12 (24)
79 COG5238 RNA1 Ran GTPase-activa 40.6 21 0.00045 31.5 2.1 84 36-121 26-131 (388)
80 smart00364 LRR_BAC Leucine-ric 36.6 21 0.00046 19.0 1.0 17 254-271 3-19 (26)
81 smart00368 LRR_RI Leucine rich 28.7 45 0.00097 17.8 1.5 11 40-50 2-12 (28)
82 smart00365 LRR_SD22 Leucine-ri 26.4 43 0.00093 17.8 1.1 9 88-96 3-11 (26)
83 KOG3763 mRNA export factor TAP 23.0 56 0.0012 31.7 2.0 59 62-124 216-284 (585)
84 KOG3763 mRNA export factor TAP 23.0 45 0.00097 32.3 1.4 78 38-116 216-307 (585)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=2.7e-22 Score=208.72 Aligned_cols=285 Identities=26% Similarity=0.359 Sum_probs=145.6
Q ss_pred CCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh--hcccCCCCcceEeeecCCCCccccC-CCCCCCccEE
Q 019416 39 GETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL--LHRMAYTSLEYLEFSSCLFFSNSKQ-DYFPTTLKRL 115 (341)
Q Consensus 39 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L 115 (341)
..+|++|++.++ .++.+|.....+++|+.|++++++.+..+ +.. +++|+.|++++|..+..+|. +..+++|+.|
T Consensus 610 ~~~L~~L~L~~s-~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~--l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L 686 (1153)
T PLN03210 610 PENLVKLQMQGS-KLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSM--ATNLETLKLSDCSSLVELPSSIQYLNKLEDL 686 (1153)
T ss_pred ccCCcEEECcCc-cccccccccccCCCCCEEECCCCCCcCcCCcccc--CCcccEEEecCCCCccccchhhhccCCCCEE
Confidence 455555666553 34455554555555666666555444444 444 55555666655555555543 2335555555
Q ss_pred EEeCCCChHHHHHHhhhhcc-cccceEeecCCCCccccCCCCCccccceEEeeccCCccccCccee--------eeCCCC
Q 019416 116 KICDCTNAELILKVLMDQKG-LALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLGESSK--------IRNCDS 186 (341)
Q Consensus 116 ~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~l~--------l~~~~~ 186 (341)
++++|..++. +|..+. .+|+.|++++|..+..+|. .+++|+.|++.++. +..+|..+. +.++..
T Consensus 687 ~L~~c~~L~~----Lp~~i~l~sL~~L~Lsgc~~L~~~p~--~~~nL~~L~L~~n~-i~~lP~~~~l~~L~~L~l~~~~~ 759 (1153)
T PLN03210 687 DMSRCENLEI----LPTGINLKSLYRLNLSGCSRLKSFPD--ISTNISWLDLDETA-IEEFPSNLRLENLDELILCEMKS 759 (1153)
T ss_pred eCCCCCCcCc----cCCcCCCCCCCEEeCCCCCCcccccc--ccCCcCeeecCCCc-cccccccccccccccccccccch
Confidence 5555555555 554443 5555555555555544442 23345555554432 333333211 111100
Q ss_pred CCcCCCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCccc
Q 019416 187 VVGPEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENL 266 (341)
Q Consensus 187 l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l 266 (341)
..-......+.......++.|+.|++++|..+..+|..++++++|+.|++++|..++.+|... .+++|++|++++|..+
T Consensus 760 ~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L 838 (1153)
T PLN03210 760 EKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRL 838 (1153)
T ss_pred hhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcc
Confidence 000000000000000011247777777776666677777777777777777776666666543 3356777777776666
Q ss_pred ccchhhhccCCCcCeEeecCCCCCccCCCC-CCCCCccEEEeecCCCCCccccccccCCCceeEEEEeCCCCCCC
Q 019416 267 MSLPHQIHKATSLQDLSVSGCPSLMSFPHG-GLPPNLISLGIIDCENLIPLSQWELHKLKHLNKYTILGGLPVLE 340 (341)
Q Consensus 267 ~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~c~~~~~~~~~~i~~~~~L~~l~l~~~C~~l~ 340 (341)
+.+|.. .++|+.|++++ +.++.+|.. ...++|++|++.+|++++..+. .+..+++|+.+++.+ |++++
T Consensus 839 ~~~p~~---~~nL~~L~Ls~-n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~-~~~~L~~L~~L~l~~-C~~L~ 907 (1153)
T PLN03210 839 RTFPDI---STNISDLNLSR-TGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSL-NISKLKHLETVDFSD-CGALT 907 (1153)
T ss_pred cccccc---ccccCEeECCC-CCCccChHHHhcCCCCCEEECCCCCCcCccCc-ccccccCCCeeecCC-Ccccc
Confidence 555532 24566666655 345555543 3355666666666666664433 245556666666666 66553
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.85 E-value=2.2e-20 Score=194.51 Aligned_cols=281 Identities=25% Similarity=0.366 Sum_probs=209.1
Q ss_pred CCCCCC-CcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh---hcccCCCCcceEeeecCCCCccccCCCCCC
Q 019416 35 GIRTGE-TLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL---LHRMAYTSLEYLEFSSCLFFSNSKQDYFPT 110 (341)
Q Consensus 35 ~l~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~---~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 110 (341)
++..+| +|+.|.+.++ .++.+|..+ ...+|++|++.++ ++..+ +.. +++|+.|+++++..+..+|....++
T Consensus 583 ~~~~lp~~Lr~L~~~~~-~l~~lP~~f-~~~~L~~L~L~~s-~l~~L~~~~~~--l~~Lk~L~Ls~~~~l~~ip~ls~l~ 657 (1153)
T PLN03210 583 GFDYLPPKLRLLRWDKY-PLRCMPSNF-RPENLVKLQMQGS-KLEKLWDGVHS--LTGLRNIDLRGSKNLKEIPDLSMAT 657 (1153)
T ss_pred chhhcCcccEEEEecCC-CCCCCCCcC-CccCCcEEECcCc-ccccccccccc--CCCCCEEECCCCCCcCcCCccccCC
Confidence 344443 4778888765 456666654 4589999999984 56555 677 9999999999888888888878899
Q ss_pred CccEEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCCCCCccccceEEeeccCCccccCc------ceeee
Q 019416 111 TLKRLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLGE------SSKIR 182 (341)
Q Consensus 111 ~L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~------~l~l~ 182 (341)
+|++|++.+|..+.. +|..++ ++|+.|++.+|+.++.+|....+++|+.|++++|..++.+|. .+.++
T Consensus 658 ~Le~L~L~~c~~L~~----lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~ 733 (1153)
T PLN03210 658 NLETLKLSDCSSLVE----LPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLD 733 (1153)
T ss_pred cccEEEecCCCCccc----cchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecC
Confidence 999999999998888 888877 999999999999999999877788999999999988777664 22222
Q ss_pred CCCCCCcCCCcccccccccc-cccccceEeeccCcCC------Ccc-cccCCCCCCcCeEEeecCCCCceecCCCCCCCC
Q 019416 183 NCDSVVGPEGESSLENMTSS-HTLELRELEIWDCLEL------EFL-PEDMHNFTDLNLLSISNCPSLESFPEGGLPNTS 254 (341)
Q Consensus 183 ~~~~l~~~~~~~~~~~l~~~-~~~~L~~L~l~~~~~l------~~l-~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 254 (341)
++. +..+|.. .+++|+.|.+.++... ..+ +.....+++|+.|++++|+.+..+|.....+++
T Consensus 734 ~n~----------i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~ 803 (1153)
T PLN03210 734 ETA----------IEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHK 803 (1153)
T ss_pred CCc----------cccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCC
Confidence 221 2223322 3445777766654321 111 111223468888888888877777765545678
Q ss_pred cceEecccCcccccchhhhccCCCcCeEeecCCCCCccCCCCCCCCCccEEEeecCCCCCccccccccCCCceeEEEEeC
Q 019416 255 LTSLLISECENLMSLPHQIHKATSLQDLSVSGCPSLMSFPHGGLPPNLISLGIIDCENLIPLSQWELHKLKHLNKYTILG 334 (341)
Q Consensus 255 L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~i~~~~~L~~l~l~~ 334 (341)
|+.|++++|+.++.+|... .+++|+.|++++|..+..++. .+++|+.|++.++ .++..|.| +..+++|+.|++.+
T Consensus 804 L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~--~~~nL~~L~Ls~n-~i~~iP~s-i~~l~~L~~L~L~~ 878 (1153)
T PLN03210 804 LEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD--ISTNISDLNLSRT-GIEEVPWW-IEKFSNLSFLDMNG 878 (1153)
T ss_pred CCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc--cccccCEeECCCC-CCccChHH-HhcCCCCCEEECCC
Confidence 9999999888888888765 678899999999888877765 5678889998775 45556654 78999999999999
Q ss_pred CCCCCC
Q 019416 335 GLPVLE 340 (341)
Q Consensus 335 ~C~~l~ 340 (341)
|++++
T Consensus 879 -C~~L~ 883 (1153)
T PLN03210 879 -CNNLQ 883 (1153)
T ss_pred -CCCcC
Confidence 99875
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.81 E-value=5.1e-19 Score=182.97 Aligned_cols=102 Identities=18% Similarity=0.121 Sum_probs=47.1
Q ss_pred CCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh---hcccCCCCcceEeeecCCCCccccC-CCCCCCcc
Q 019416 38 TGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL---LHRMAYTSLEYLEFSSCLFFSNSKQ-DYFPTTLK 113 (341)
Q Consensus 38 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~---~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~ 113 (341)
.+++|++|++++|.....+|..+..+++|++|++++|.....+ +.. +++|++|++++|.....+|. .+.+++|+
T Consensus 138 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~--l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 215 (968)
T PLN00113 138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTN--LTSLEFLTLASNQLVGQIPRELGQMKSLK 215 (968)
T ss_pred ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhh--CcCCCeeeccCCCCcCcCChHHcCcCCcc
Confidence 4555666666654433344444555556666666553221111 445 55555555555433323332 22344555
Q ss_pred EEEEeCCCChHHHHHHhhhhcc--cccceEeecC
Q 019416 114 RLKICDCTNAELILKVLMDQKG--LALESLEVDG 145 (341)
Q Consensus 114 ~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~ 145 (341)
.|++++|..... +|..++ ++|++|++++
T Consensus 216 ~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~ 245 (968)
T PLN00113 216 WIYLGYNNLSGE----IPYEIGGLTSLNHLDLVY 245 (968)
T ss_pred EEECcCCccCCc----CChhHhcCCCCCEEECcC
Confidence 555555443222 333333 4444444444
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.80 E-value=4.4e-19 Score=183.48 Aligned_cols=284 Identities=14% Similarity=0.082 Sum_probs=138.3
Q ss_pred CCCCCCcCeEEcCCCCCCcccccccc-CCCCccEEeccCCCCchhh-hcccCCCCcceEeeecCCCCccccC-CCCCCCc
Q 019416 36 IRTGETLESLEIDNLSSLASFLRSEL-AATTVKQLKINKCPDLEVL-LHRMAYTSLEYLEFSSCLFFSNSKQ-DYFPTTL 112 (341)
Q Consensus 36 l~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~l~~~-~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L 112 (341)
+..+++|++|++++|.....+|.... .+++|++|++++|+....+ .+. +++|++|++++|.....+|. .+.+++|
T Consensus 89 ~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~--l~~L~~L~Ls~n~~~~~~p~~~~~l~~L 166 (968)
T PLN00113 89 IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGS--IPNLETLDLSNNMLSGEIPNDIGSFSSL 166 (968)
T ss_pred HhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccc--cCCCCEEECcCCcccccCChHHhcCCCC
Confidence 44566666666666543334454433 5666666666663222222 445 66666666666533333332 3345666
Q ss_pred cEEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCCC-CCccccceEEeeccCCccccCc---------cee
Q 019416 113 KRLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPIN-QLPATLRHLRIVNCMNLKSLGE---------SSK 180 (341)
Q Consensus 113 ~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~~~~l~~~~~---------~l~ 180 (341)
++|++++|..... +|..++ ++|++|++++|.....+|.. ..+++|+.|+++++.-...+|. .++
T Consensus 167 ~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 242 (968)
T PLN00113 167 KVLDLGGNVLVGK----IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLD 242 (968)
T ss_pred CEEECccCccccc----CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEE
Confidence 6666666654333 454444 66666666665433334433 3455666666665432222322 222
Q ss_pred eeCCCCCCc-CCCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEe
Q 019416 181 IRNCDSVVG-PEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLL 259 (341)
Q Consensus 181 l~~~~~l~~-~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~ 259 (341)
++++..... |.. +. .+++|+.|+++++.....+|..+..+++|+.|++++|.-...+|.....+++|++|+
T Consensus 243 L~~n~l~~~~p~~---l~-----~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 314 (968)
T PLN00113 243 LVYNNLTGPIPSS---LG-----NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILH 314 (968)
T ss_pred CcCceeccccChh---Hh-----CCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEE
Confidence 222211100 000 00 233455555555443344455555555566666555432223333222234566666
Q ss_pred cccCcccccchhhhccCCCcCeEeecCCCCCccCCCC-CCCCCccEEEeecCCCCCccccccccCCCceeEEEEeC
Q 019416 260 ISECENLMSLPHQIHKATSLQDLSVSGCPSLMSFPHG-GLPPNLISLGIIDCENLIPLSQWELHKLKHLNKYTILG 334 (341)
Q Consensus 260 l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~c~~~~~~~~~~i~~~~~L~~l~l~~ 334 (341)
++++.-...+|..+..+++|+.|++++|.--..++.. +..++|+.|++++|......+.+ +..+.+|+.+++.+
T Consensus 315 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~-~~~~~~L~~L~l~~ 389 (968)
T PLN00113 315 LFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG-LCSSGNLFKLILFS 389 (968)
T ss_pred CCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChh-HhCcCCCCEEECcC
Confidence 6654333344555556666666666654332233332 23456666666655433333332 44556666666655
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.67 E-value=2.4e-17 Score=151.48 Aligned_cols=301 Identities=15% Similarity=0.211 Sum_probs=176.7
Q ss_pred CCchhhhhhcccCC---CccccCCCCCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh----hcccCCCC
Q 019416 16 PVPKNFLALALFPD---EDKILGIRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL----LHRMAYTS 88 (341)
Q Consensus 16 ~~~~~~~~l~~~~~---~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~ 88 (341)
.+|.....|++-.+ ......+.++|+|+.+++.+ +.++.+|.......+|+.|++.. +.+..+ +.. ++.
T Consensus 75 ~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~-N~Lt~IP~f~~~sghl~~L~L~~-N~I~sv~se~L~~--l~a 150 (873)
T KOG4194|consen 75 FLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNK-NELTRIPRFGHESGHLEKLDLRH-NLISSVTSEELSA--LPA 150 (873)
T ss_pred cCccceeeeeccccccccCcHHHHhcCCcceeeeecc-chhhhcccccccccceeEEeeec-cccccccHHHHHh--Hhh
Confidence 45555555555332 34445677899999999987 58888888666667899999988 566665 888 899
Q ss_pred cceEeeecCCCCccccCCCCC--CCccEEEEeCCCChHHHHHHhhhhcc---cccceEeecCCCCccccCCC--CCcccc
Q 019416 89 LEYLEFSSCLFFSNSKQDYFP--TTLKRLKICDCTNAELILKVLMDQKG---LALESLEVDGCSSLFSLPIN--QLPATL 161 (341)
Q Consensus 89 L~~L~l~~~~~l~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~l~~l~~~--~~~~~L 161 (341)
|+.||++.+ .+.+++...++ .++++|+++++.... +..+.+ .+|.+|.++. +.++.+|.- ..+++|
T Consensus 151 lrslDLSrN-~is~i~~~sfp~~~ni~~L~La~N~It~-----l~~~~F~~lnsL~tlkLsr-NrittLp~r~Fk~L~~L 223 (873)
T KOG4194|consen 151 LRSLDLSRN-LISEIPKPSFPAKVNIKKLNLASNRITT-----LETGHFDSLNSLLTLKLSR-NRITTLPQRSFKRLPKL 223 (873)
T ss_pred hhhhhhhhc-hhhcccCCCCCCCCCceEEeeccccccc-----cccccccccchheeeeccc-CcccccCHHHhhhcchh
Confidence 999999884 78888776664 579999999987433 222222 7888888887 678888765 457889
Q ss_pred ceEEeeccCCccccCcceeeeCCCCCCc-CCCccccccccc---ccccccceEeeccCcCCCcc-cccCCCCCCcCeEEe
Q 019416 162 RHLRIVNCMNLKSLGESSKIRNCDSVVG-PEGESSLENMTS---SHTLELRELEIWDCLELEFL-PEDMHNFTDLNLLSI 236 (341)
Q Consensus 162 ~~L~l~~~~~l~~~~~~l~l~~~~~l~~-~~~~~~~~~l~~---~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l 236 (341)
++|++..+. ++ +.+.+.+.+.+.++. ...-.++..+.- =.+.+++.|.+..+ .+..+ -.|+.+++.|+.|++
T Consensus 224 ~~LdLnrN~-ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N-~l~~vn~g~lfgLt~L~~L~l 300 (873)
T KOG4194|consen 224 ESLDLNRNR-IR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETN-RLQAVNEGWLFGLTSLEQLDL 300 (873)
T ss_pred hhhhccccc-ee-eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccc-hhhhhhcccccccchhhhhcc
Confidence 998887632 22 222333333332222 000000000000 02335666666653 23333 245566677777777
Q ss_pred ecCCCCceecCCCC-CCCCcceEecccCcccccchh-hhccCCCcCeEeecCCCCCccCCCCCC----------------
Q 019416 237 SNCPSLESFPEGGL-PNTSLTSLLISECENLMSLPH-QIHKATSLQDLSVSGCPSLMSFPHGGL---------------- 298 (341)
Q Consensus 237 ~~c~~l~~~~~~~~-~~~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~~~~~~~---------------- 298 (341)
+++ .+..+....+ ..++|+.|+++.+ +++.+++ ++..+.+|++|.+++ +.+..+.++.+
T Consensus 301 S~N-aI~rih~d~WsftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~-Nsi~~l~e~af~~lssL~~LdLr~N~l 377 (873)
T KOG4194|consen 301 SYN-AIQRIHIDSWSFTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSH-NSIDHLAEGAFVGLSSLHKLDLRSNEL 377 (873)
T ss_pred chh-hhheeecchhhhcccceeEecccc-ccccCChhHHHHHHHhhhhcccc-cchHHHHhhHHHHhhhhhhhcCcCCeE
Confidence 763 3444433222 2356777777663 4555543 344444444444443 23333322211
Q ss_pred -------------CCCccEEEeecCCCCCccccccccCCCceeEEEEeC
Q 019416 299 -------------PPNLISLGIIDCENLIPLSQWELHKLKHLNKYTILG 334 (341)
Q Consensus 299 -------------~~~L~~L~l~~c~~~~~~~~~~i~~~~~L~~l~l~~ 334 (341)
+++|+.|++.++ +++..++.++..+..||+|++.+
T Consensus 378 s~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~ 425 (873)
T KOG4194|consen 378 SWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGD 425 (873)
T ss_pred EEEEecchhhhccchhhhheeecCc-eeeecchhhhccCcccceecCCC
Confidence 456666666553 44444444566777777777766
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.55 E-value=1.6e-15 Score=139.63 Aligned_cols=249 Identities=13% Similarity=0.231 Sum_probs=135.8
Q ss_pred CCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccCCCCC-CCccEEEEeCCCChHHHHHHhhhhcc--c
Q 019416 64 TTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQDYFP-TTLKRLKICDCTNAELILKVLMDQKG--L 136 (341)
Q Consensus 64 ~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~--~ 136 (341)
..-+.|++++ +++.++ |.. +++|+.+++.. +.+..+|..+.. ..+++|++..+..... -.+.+. +
T Consensus 78 ~~t~~Ldlsn-Nkl~~id~~~f~n--l~nLq~v~l~~-N~Lt~IP~f~~~sghl~~L~L~~N~I~sv----~se~L~~l~ 149 (873)
T KOG4194|consen 78 SQTQTLDLSN-NKLSHIDFEFFYN--LPNLQEVNLNK-NELTRIPRFGHESGHLEKLDLRHNLISSV----TSEELSALP 149 (873)
T ss_pred cceeeeeccc-cccccCcHHHHhc--CCcceeeeecc-chhhhcccccccccceeEEeeeccccccc----cHHHHHhHh
Confidence 3445567766 555555 556 67777777765 356666665443 3366666666542221 111111 5
Q ss_pred ccceEeecCCCCccccCCCCCc--cccceEEeeccCCccccCc----------ceeeeCCCCCCcCCCcccccccccccc
Q 019416 137 ALESLEVDGCSSLFSLPINQLP--ATLRHLRIVNCMNLKSLGE----------SSKIRNCDSVVGPEGESSLENMTSSHT 204 (341)
Q Consensus 137 ~L~~L~l~~~~~l~~l~~~~~~--~~L~~L~l~~~~~l~~~~~----------~l~l~~~~~l~~~~~~~~~~~l~~~~~ 204 (341)
.|+.|+++. +.+..++...++ .++++|+++++ .++.+.. .+.+++..--+-|. ..|+ .+
T Consensus 150 alrslDLSr-N~is~i~~~sfp~~~ni~~L~La~N-~It~l~~~~F~~lnsL~tlkLsrNrittLp~--r~Fk-----~L 220 (873)
T KOG4194|consen 150 ALRSLDLSR-NLISEIPKPSFPAKVNIKKLNLASN-RITTLETGHFDSLNSLLTLKLSRNRITTLPQ--RSFK-----RL 220 (873)
T ss_pred hhhhhhhhh-chhhcccCCCCCCCCCceEEeeccc-cccccccccccccchheeeecccCcccccCH--HHhh-----hc
Confidence 666666655 455555554443 35666666553 2332221 11111111000011 1122 23
Q ss_pred cccceEeeccCcCCCcc-cccCCCCCCcCeEEeecCCCCceecCCCC-CCCCcceEecccCcccccchh-hhccCCCcCe
Q 019416 205 LELRELEIWDCLELEFL-PEDMHNFTDLNLLSISNCPSLESFPEGGL-PNTSLTSLLISECENLMSLPH-QIHKATSLQD 281 (341)
Q Consensus 205 ~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~~~~~~~-~~~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~ 281 (341)
++|+.|++..+ .++.+ -..|+++++|+.|.+..+ .+..+.++.+ .+.++++|+++. +++..+.+ ++-++++|++
T Consensus 221 ~~L~~LdLnrN-~irive~ltFqgL~Sl~nlklqrN-~I~kL~DG~Fy~l~kme~l~L~~-N~l~~vn~g~lfgLt~L~~ 297 (873)
T KOG4194|consen 221 PKLESLDLNRN-RIRIVEGLTFQGLPSLQNLKLQRN-DISKLDDGAFYGLEKMEHLNLET-NRLQAVNEGWLFGLTSLEQ 297 (873)
T ss_pred chhhhhhcccc-ceeeehhhhhcCchhhhhhhhhhc-CcccccCcceeeecccceeeccc-chhhhhhcccccccchhhh
Confidence 36777777663 33333 345677888888888763 4666666443 357888888887 35776654 5667788888
Q ss_pred EeecCCCCCccCCCC--CCCCCccEEEeecCCCCCccccccccCCCceeEEEEeC
Q 019416 282 LSVSGCPSLMSFPHG--GLPPNLISLGIIDCENLIPLSQWELHKLKHLNKYTILG 334 (341)
Q Consensus 282 L~l~~c~~l~~~~~~--~~~~~L~~L~l~~c~~~~~~~~~~i~~~~~L~~l~l~~ 334 (341)
|++++ +.|.++... .+.++|++|+++++ .++.++...+..+..|++|+++.
T Consensus 298 L~lS~-NaI~rih~d~WsftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~ 350 (873)
T KOG4194|consen 298 LDLSY-NAIQRIHIDSWSFTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSH 350 (873)
T ss_pred hccch-hhhheeecchhhhcccceeEecccc-ccccCChhHHHHHHHhhhhcccc
Confidence 88876 567766655 45677888888764 33333222345555666665554
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.48 E-value=1.1e-15 Score=141.80 Aligned_cols=277 Identities=16% Similarity=0.160 Sum_probs=186.0
Q ss_pred cCCCCCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh---hcccCCCCcceEeeecCCCCcc--ccC-CC
Q 019416 34 LGIRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL---LHRMAYTSLEYLEFSSCLFFSN--SKQ-DY 107 (341)
Q Consensus 34 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~---~~~~~l~~L~~L~l~~~~~l~~--~~~-~~ 107 (341)
.....+..++-|.|.. ..+..+|...+.+.+|+.|.++. +++..+ +.. ++.|+.+.++++ .+.+ +|. +.
T Consensus 26 ~~v~qMt~~~WLkLnr-t~L~~vPeEL~~lqkLEHLs~~H-N~L~~vhGELs~--Lp~LRsv~~R~N-~LKnsGiP~diF 100 (1255)
T KOG0444|consen 26 HDVEQMTQMTWLKLNR-TKLEQVPEELSRLQKLEHLSMAH-NQLISVHGELSD--LPRLRSVIVRDN-NLKNSGIPTDIF 100 (1255)
T ss_pred hhHHHhhheeEEEech-hhhhhChHHHHHHhhhhhhhhhh-hhhHhhhhhhcc--chhhHHHhhhcc-ccccCCCCchhc
Confidence 3445688888999986 67888898888999999999998 566666 778 889999999875 4443 333 33
Q ss_pred CCCCccEEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCCC--CCccccceEEeeccCCccccCc------
Q 019416 108 FPTTLKRLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPIN--QLPATLRHLRIVNCMNLKSLGE------ 177 (341)
Q Consensus 108 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~l~~~~~------ 177 (341)
.+..|..|+++++. +.. .|..+. .++..|+++. +++..+|.. .++..|-.|+++++ .++.+|.
T Consensus 101 ~l~dLt~lDLShNq-L~E----vP~~LE~AKn~iVLNLS~-N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~ 173 (1255)
T KOG0444|consen 101 RLKDLTILDLSHNQ-LRE----VPTNLEYAKNSIVLNLSY-NNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLS 173 (1255)
T ss_pred ccccceeeecchhh-hhh----cchhhhhhcCcEEEEccc-CccccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHh
Confidence 37888999999875 566 787776 8888899987 788888865 45667778888874 4666654
Q ss_pred ---ceeeeCCCCCCcCCCcccccccccccccccceEeeccCcC-CCcccccCCCCCCcCeEEeecCCCCceecCCCCCCC
Q 019416 178 ---SSKIRNCDSVVGPEGESSLENMTSSHTLELRELEIWDCLE-LEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNT 253 (341)
Q Consensus 178 ---~l~l~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~-l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 253 (341)
++++++.+. ..+-++-+| +++.|+.|.+++... +..+|..+..+.+|..++++. +++..+|+.....+
T Consensus 174 ~LqtL~Ls~NPL-----~hfQLrQLP--smtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPecly~l~ 245 (1255)
T KOG0444|consen 174 MLQTLKLSNNPL-----NHFQLRQLP--SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPECLYKLR 245 (1255)
T ss_pred hhhhhhcCCChh-----hHHHHhcCc--cchhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcchHHHhhhh
Confidence 444444332 112222244 455566666666432 245666777777777777776 34666666555556
Q ss_pred CcceEecccCcccccchhhhccCCCcCeEeecCCCCCccCCCC-CCCCCccEEEeecCCCCC--ccccccccCCCceeEE
Q 019416 254 SLTSLLISECENLMSLPHQIHKATSLQDLSVSGCPSLMSFPHG-GLPPNLISLGIIDCENLI--PLSQWELHKLKHLNKY 330 (341)
Q Consensus 254 ~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~c~~~~--~~~~~~i~~~~~L~~l 330 (341)
+|+.|.++++ +++++.-......+|++|+++. +++..+|.. --++.|+.|...++ +++ ..|. ||+++..|+..
T Consensus 246 ~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSr-NQLt~LP~avcKL~kL~kLy~n~N-kL~FeGiPS-GIGKL~~Levf 321 (1255)
T KOG0444|consen 246 NLRRLNLSGN-KITELNMTEGEWENLETLNLSR-NQLTVLPDAVCKLTKLTKLYANNN-KLTFEGIPS-GIGKLIQLEVF 321 (1255)
T ss_pred hhheeccCcC-ceeeeeccHHHHhhhhhhcccc-chhccchHHHhhhHHHHHHHhccC-cccccCCcc-chhhhhhhHHH
Confidence 7777777773 5776655556667777777776 566666654 22566676666543 333 3444 57777777777
Q ss_pred EEeC
Q 019416 331 TILG 334 (341)
Q Consensus 331 ~l~~ 334 (341)
..++
T Consensus 322 ~aan 325 (1255)
T KOG0444|consen 322 HAAN 325 (1255)
T ss_pred Hhhc
Confidence 6555
No 8
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.45 E-value=2.6e-12 Score=126.53 Aligned_cols=248 Identities=29% Similarity=0.339 Sum_probs=166.9
Q ss_pred CCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhhhcccCCCCcceEeeecCCCCccccCCCCCCCccEEEEeC
Q 019416 40 ETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVLLHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLKRLKICD 119 (341)
Q Consensus 40 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~ 119 (341)
.+-..|+++++ .++.+|..+. ++|+.|.+.+ +++..+-.. +++|++|++++| .+..+|. .+++|++|++.+
T Consensus 201 ~~~~~LdLs~~-~LtsLP~~l~--~~L~~L~L~~-N~Lt~LP~l--p~~Lk~LdLs~N-~LtsLP~--lp~sL~~L~Ls~ 271 (788)
T PRK15387 201 NGNAVLNVGES-GLTTLPDCLP--AHITTLVIPD-NNLTSLPAL--PPELRTLEVSGN-QLTSLPV--LPPGLLELSIFS 271 (788)
T ss_pred CCCcEEEcCCC-CCCcCCcchh--cCCCEEEccC-CcCCCCCCC--CCCCcEEEecCC-ccCcccC--cccccceeeccC
Confidence 34567888875 6667777554 4788888887 566666555 678888998875 7777764 457888888888
Q ss_pred CCChHHHHHHhhhhcccccceEeecCCCCccccCCCCCccccceEEeeccCCccccCc------ceeeeCCCCCCcCCCc
Q 019416 120 CTNAELILKVLMDQKGLALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLGE------SSKIRNCDSVVGPEGE 193 (341)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~------~l~l~~~~~l~~~~~~ 193 (341)
|. +.. +|... .+|+.|++++ +.++.+|. .+++|+.|+++++ .++.+|. .+.++++. ++.
T Consensus 272 N~-L~~----Lp~lp-~~L~~L~Ls~-N~Lt~LP~--~p~~L~~LdLS~N-~L~~Lp~lp~~L~~L~Ls~N~-L~~---- 336 (788)
T PRK15387 272 NP-LTH----LPALP-SGLCKLWIFG-NQLTSLPV--LPPGLQELSVSDN-QLASLPALPSELCKLWAYNNQ-LTS---- 336 (788)
T ss_pred Cc-hhh----hhhch-hhcCEEECcC-Cccccccc--cccccceeECCCC-ccccCCCCcccccccccccCc-ccc----
Confidence 75 555 55543 6788888877 46777664 4567888888775 4555443 22222211 111
Q ss_pred ccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccchhhh
Q 019416 194 SSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQI 273 (341)
Q Consensus 194 ~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l 273 (341)
+..+|. +|+.|++++ +.++.+|... ++|+.|+++++ .+..+|.. + .+|+.|+++++ .++.+|..
T Consensus 337 --LP~lp~----~Lq~LdLS~-N~Ls~LP~lp---~~L~~L~Ls~N-~L~~LP~l--~-~~L~~LdLs~N-~Lt~LP~l- 400 (788)
T PRK15387 337 --LPTLPS----GLQELSVSD-NQLASLPTLP---SELYKLWAYNN-RLTSLPAL--P-SGLKELIVSGN-RLTSLPVL- 400 (788)
T ss_pred --cccccc----ccceEecCC-CccCCCCCCC---cccceehhhcc-ccccCccc--c-cccceEEecCC-cccCCCCc-
Confidence 111232 488888887 4566676543 56778888774 45556542 2 48999999885 58877743
Q ss_pred ccCCCcCeEeecCCCCCccCCCCCCCCCccEEEeecCCCCCccccccccCCCceeEEEEeC
Q 019416 274 HKATSLQDLSVSGCPSLMSFPHGGLPPNLISLGIIDCENLIPLSQWELHKLKHLNKYTILG 334 (341)
Q Consensus 274 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~i~~~~~L~~l~l~~ 334 (341)
.++|+.|+++++ .+..+|. .+.+|+.|+++++ +++.+|.. +.++++|+.+++++
T Consensus 401 --~s~L~~LdLS~N-~LssIP~--l~~~L~~L~Ls~N-qLt~LP~s-l~~L~~L~~LdLs~ 454 (788)
T PRK15387 401 --PSELKELMVSGN-RLTSLPM--LPSGLLSLSVYRN-QLTRLPES-LIHLSSETTVNLEG 454 (788)
T ss_pred --ccCCCEEEccCC-cCCCCCc--chhhhhhhhhccC-cccccChH-HhhccCCCeEECCC
Confidence 367899999884 6777775 5668888998875 45556653 67889999999998
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.44 E-value=3.1e-15 Score=138.84 Aligned_cols=105 Identities=25% Similarity=0.381 Sum_probs=75.5
Q ss_pred cceEeeccCcCCCcccccCCCCCCcCeEEeecCCC-CceecCCCCCCCCcceEecccCcccccchhhhccCCCcCeEeec
Q 019416 207 LRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPS-LESFPEGGLPNTSLTSLLISECENLMSLPHQIHKATSLQDLSVS 285 (341)
Q Consensus 207 L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~-l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~ 285 (341)
|++|.+++ +.++.+|..+..++.|+.|.+.++.- .+.+|.+.-.+.+|+.+..++ +.++-+|+++..+..|+.|.+.
T Consensus 270 lEtLNlSr-NQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~ 347 (1255)
T KOG0444|consen 270 LETLNLSR-NQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLD 347 (1255)
T ss_pred hhhhcccc-chhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc-cccccCchhhhhhHHHHHhccc
Confidence 55566655 45566677777777777776665431 244555554456777777776 4688889999999999999995
Q ss_pred CCCCCccCCCC-CCCCCccEEEeecCCCCC
Q 019416 286 GCPSLMSFPHG-GLPPNLISLGIIDCENLI 314 (341)
Q Consensus 286 ~c~~l~~~~~~-~~~~~L~~L~l~~c~~~~ 314 (341)
|+.+..+|+. .+++.|++|+++.++++.
T Consensus 348 -~NrLiTLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 348 -HNRLITLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred -ccceeechhhhhhcCCcceeeccCCcCcc
Confidence 5777788876 678899999999988776
No 10
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.39 E-value=5.9e-12 Score=124.08 Aligned_cols=118 Identities=25% Similarity=0.220 Sum_probs=67.0
Q ss_pred CCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhhhcccCCCCcceEeeecCCCCccccCCCCCCCccEEEEe
Q 019416 39 GETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVLLHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLKRLKIC 118 (341)
Q Consensus 39 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~ 118 (341)
.++|++|++++| .++.+|.. .++|+.|++++ +.+..+-.. +.+|+.|++++| .+..+|. .+++|+.|+++
T Consensus 241 p~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~-N~L~~Lp~l--p~~L~~L~Ls~N-~Lt~LP~--~p~~L~~LdLS 310 (788)
T PRK15387 241 PPELRTLEVSGN-QLTSLPVL---PPGLLELSIFS-NPLTHLPAL--PSGLCKLWIFGN-QLTSLPV--LPPGLQELSVS 310 (788)
T ss_pred CCCCcEEEecCC-ccCcccCc---ccccceeeccC-Cchhhhhhc--hhhcCEEECcCC-ccccccc--cccccceeECC
Confidence 456777777764 45555431 25667777766 345444333 456666777664 5555553 34667777777
Q ss_pred CCCChHHHHHHhhhhcccccceEeecCCCCccccCCCCCccccceEEeeccCCccccC
Q 019416 119 DCTNAELILKVLMDQKGLALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLG 176 (341)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~ 176 (341)
+|. +.. +|... .+|+.|++.+ +.++.+|. .+.+|+.|+++++ .++.+|
T Consensus 311 ~N~-L~~----Lp~lp-~~L~~L~Ls~-N~L~~LP~--lp~~Lq~LdLS~N-~Ls~LP 358 (788)
T PRK15387 311 DNQ-LAS----LPALP-SELCKLWAYN-NQLTSLPT--LPSGLQELSVSDN-QLASLP 358 (788)
T ss_pred CCc-ccc----CCCCc-cccccccccc-Cccccccc--cccccceEecCCC-ccCCCC
Confidence 763 444 44322 5566666665 35555552 3456777777663 444444
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.39 E-value=1.9e-15 Score=133.47 Aligned_cols=280 Identities=18% Similarity=0.233 Sum_probs=177.1
Q ss_pred CCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh--hcccCCCCcceEeeecCCCCccccCC--CCCCCcc
Q 019416 38 TGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL--LHRMAYTSLEYLEFSSCLFFSNSKQD--YFPTTLK 113 (341)
Q Consensus 38 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~ 113 (341)
.+..|++|+... +-++.+|+..+++..|..|.+.. ++++.+ |++ +..|++++++. +.+..+|.. ..++++.
T Consensus 181 ~m~~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~-Nki~~lPef~g--cs~L~Elh~g~-N~i~~lpae~~~~L~~l~ 255 (565)
T KOG0472|consen 181 AMKRLKHLDCNS-NLLETLPPELGGLESLELLYLRR-NKIRFLPEFPG--CSLLKELHVGE-NQIEMLPAEHLKHLNSLL 255 (565)
T ss_pred HHHHHHhcccch-hhhhcCChhhcchhhhHHHHhhh-cccccCCCCCc--cHHHHHHHhcc-cHHHhhHHHHhcccccce
Confidence 366666666665 35566677677777777777776 566665 777 77888888765 466666652 2478888
Q ss_pred EEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCCC-CCccccceEEeeccCCccccCc-------------
Q 019416 114 RLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPIN-QLPATLRHLRIVNCMNLKSLGE------------- 177 (341)
Q Consensus 114 ~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~~~~l~~~~~------------- 177 (341)
.|+++++. ++. +|+.+. .+|+.|++++ +.++.+|.. +++ +|++|-+.+.+ ++.+..
T Consensus 256 vLDLRdNk-lke----~Pde~clLrsL~rLDlSN-N~is~Lp~sLgnl-hL~~L~leGNP-lrTiRr~ii~~gT~~vLKy 327 (565)
T KOG0472|consen 256 VLDLRDNK-LKE----VPDEICLLRSLERLDLSN-NDISSLPYSLGNL-HLKFLALEGNP-LRTIRREIISKGTQEVLKY 327 (565)
T ss_pred eeeccccc-ccc----CchHHHHhhhhhhhcccC-CccccCCcccccc-eeeehhhcCCc-hHHHHHHHHcccHHHHHHH
Confidence 88888875 666 887777 8899999987 688888876 555 77777776654 222211
Q ss_pred ---cee---eeCCCCCCc-----CCCc-------------------------------------------ccccccccc-
Q 019416 178 ---SSK---IRNCDSVVG-----PEGE-------------------------------------------SSLENMTSS- 202 (341)
Q Consensus 178 ---~l~---l~~~~~l~~-----~~~~-------------------------------------------~~~~~l~~~- 202 (341)
.+. ++.....+. +.+. ..++.+|+.
T Consensus 328 Lrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L 407 (565)
T KOG0472|consen 328 LRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRL 407 (565)
T ss_pred HHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhh
Confidence 000 000000000 0000 001111110
Q ss_pred -cccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccchhhhccCCCcCe
Q 019416 203 -HTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQIHKATSLQD 281 (341)
Q Consensus 203 -~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~ 281 (341)
.+..+.+.-+...+.+..+|..+..+++|..|+++++ -+..+|........|+.|+++.+ +++.+|..+..+..++.
T Consensus 408 ~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEt 485 (565)
T KOG0472|consen 408 VELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFN-RFRMLPECLYELQTLET 485 (565)
T ss_pred HHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccc-hhhhcchhhhhhhhhheeccccc-ccccchHHHhhHHHHHH
Confidence 0011111111222344455666777899999999984 46677775544458999999985 78889987777777777
Q ss_pred EeecCCCCCccCCCCC--CCCCccEEEeecCCCCCccccccccCCCceeEEEEeCC
Q 019416 282 LSVSGCPSLMSFPHGG--LPPNLISLGIIDCENLIPLSQWELHKLKHLNKYTILGG 335 (341)
Q Consensus 282 L~l~~c~~l~~~~~~~--~~~~L~~L~l~~c~~~~~~~~~~i~~~~~L~~l~l~~~ 335 (341)
+..++ ++++.++..+ ...+|.+|++.++ .++..|. .++++++|++|++.||
T Consensus 486 llas~-nqi~~vd~~~l~nm~nL~tLDL~nN-dlq~IPp-~LgnmtnL~hLeL~gN 538 (565)
T KOG0472|consen 486 LLASN-NQIGSVDPSGLKNMRNLTTLDLQNN-DLQQIPP-ILGNMTNLRHLELDGN 538 (565)
T ss_pred HHhcc-ccccccChHHhhhhhhcceeccCCC-chhhCCh-hhccccceeEEEecCC
Confidence 76665 6888888764 3678999999765 3443444 4799999999999983
No 12
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.35 E-value=3.7e-12 Score=125.94 Aligned_cols=122 Identities=20% Similarity=0.270 Sum_probs=82.2
Q ss_pred CCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh-hcccCCCCcceEeeecCCCCccccCCCCCCCccEEEEe
Q 019416 40 ETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL-LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLKRLKIC 118 (341)
Q Consensus 40 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~ 118 (341)
.+...|+++++ .++.+|..+. ++|+.|++++ +++..+ ... +.+|+.|++++| .+..+|. ..+++|+.|+++
T Consensus 178 ~~~~~L~L~~~-~LtsLP~~Ip--~~L~~L~Ls~-N~LtsLP~~l--~~nL~~L~Ls~N-~LtsLP~-~l~~~L~~L~Ls 249 (754)
T PRK15370 178 NNKTELRLKIL-GLTTIPACIP--EQITTLILDN-NELKSLPENL--QGNIKTLYANSN-QLTSIPA-TLPDTIQEMELS 249 (754)
T ss_pred cCceEEEeCCC-CcCcCCcccc--cCCcEEEecC-CCCCcCChhh--ccCCCEEECCCC-ccccCCh-hhhccccEEECc
Confidence 34677888864 5666665432 5788888887 466665 444 568888888875 5666664 345678888888
Q ss_pred CCCChHHHHHHhhhhcccccceEeecCCCCccccCCCCCccccceEEeeccCCccccCc
Q 019416 119 DCTNAELILKVLMDQKGLALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLGE 177 (341)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~ 177 (341)
+|. +.. +|..+..+|+.|++++ +.++.+|.. .+++|+.|+++++ +++.+|.
T Consensus 250 ~N~-L~~----LP~~l~s~L~~L~Ls~-N~L~~LP~~-l~~sL~~L~Ls~N-~Lt~LP~ 300 (754)
T PRK15370 250 INR-ITE----LPERLPSALQSLDLFH-NKISCLPEN-LPEELRYLSVYDN-SIRTLPA 300 (754)
T ss_pred CCc-cCc----CChhHhCCCCEEECcC-CccCccccc-cCCCCcEEECCCC-ccccCcc
Confidence 876 445 6655546788888875 577776642 3457888888775 4555543
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.23 E-value=3.8e-11 Score=118.88 Aligned_cols=222 Identities=24% Similarity=0.345 Sum_probs=148.4
Q ss_pred CCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh-hcccCCCCcceEeeecCCCCccccCCCCCCCccEEEEe
Q 019416 40 ETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL-LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLKRLKIC 118 (341)
Q Consensus 40 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~ 118 (341)
++|+.|++++| .++.+|..+. .+|+.|++++ +++..+ ... ..+|+.|++++| .+..+|. ..+.+|+.|+++
T Consensus 199 ~~L~~L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~-N~LtsLP~~l--~~~L~~L~Ls~N-~L~~LP~-~l~s~L~~L~Ls 270 (754)
T PRK15370 199 EQITTLILDNN-ELKSLPENLQ--GNIKTLYANS-NQLTSIPATL--PDTIQEMELSIN-RITELPE-RLPSALQSLDLF 270 (754)
T ss_pred cCCcEEEecCC-CCCcCChhhc--cCCCEEECCC-CccccCChhh--hccccEEECcCC-ccCcCCh-hHhCCCCEEECc
Confidence 46899999975 6677776443 6899999998 456665 333 457899999886 5667764 235789999998
Q ss_pred CCCChHHHHHHhhhhcccccceEeecCCCCccccCCCCCccccceEEeeccCCccccCcceeeeCCCCCCcCCCcccccc
Q 019416 119 DCTNAELILKVLMDQKGLALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVGPEGESSLEN 198 (341)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~~~~~~~~~~ 198 (341)
+|. +.. +|..+.++|+.|++++| .++.+|. ..+++|+.|+++++ .+..+|..
T Consensus 271 ~N~-L~~----LP~~l~~sL~~L~Ls~N-~Lt~LP~-~lp~sL~~L~Ls~N-~Lt~LP~~-------------------- 322 (754)
T PRK15370 271 HNK-ISC----LPENLPEELRYLSVYDN-SIRTLPA-HLPSGITHLNVQSN-SLTALPET-------------------- 322 (754)
T ss_pred CCc-cCc----cccccCCCCcEEECCCC-ccccCcc-cchhhHHHHHhcCC-ccccCCcc--------------------
Confidence 764 556 77665578999999884 6777664 23457888888774 34444321
Q ss_pred cccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccchhhhccCCC
Q 019416 199 MTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQIHKATS 278 (341)
Q Consensus 199 l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~ 278 (341)
++ ++|+.|.+.+| .+..+|..+ .++|+.|++++|. +..+|... + ++|++|++++| .++.+|..+. .+
T Consensus 323 l~----~sL~~L~Ls~N-~Lt~LP~~l--~~sL~~L~Ls~N~-L~~LP~~l-p-~~L~~LdLs~N-~Lt~LP~~l~--~s 389 (754)
T PRK15370 323 LP----PGLKTLEAGEN-ALTSLPASL--PPELQVLDVSKNQ-ITVLPETL-P-PTITTLDVSRN-ALTNLPENLP--AA 389 (754)
T ss_pred cc----ccceeccccCC-ccccCChhh--cCcccEEECCCCC-CCcCChhh-c-CCcCEEECCCC-cCCCCCHhHH--HH
Confidence 12 24788888775 355566554 2678888888763 55555432 2 47888888875 4777776543 36
Q ss_pred cCeEeecCCCCCccCCCC-----CCCCCccEEEeecCC
Q 019416 279 LQDLSVSGCPSLMSFPHG-----GLPPNLISLGIIDCE 311 (341)
Q Consensus 279 L~~L~l~~c~~l~~~~~~-----~~~~~L~~L~l~~c~ 311 (341)
|+.|++++ +.+..+|.. ...+++..+++.+++
T Consensus 390 L~~LdLs~-N~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 390 LQIMQASR-NNLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred HHHHhhcc-CCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 77788877 456666643 112567777777765
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.10 E-value=4.1e-13 Score=118.87 Aligned_cols=245 Identities=22% Similarity=0.259 Sum_probs=120.5
Q ss_pred CCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh---hcccCCCCcceEeeecCCCCccccC-CCCCCCccEE
Q 019416 40 ETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL---LHRMAYTSLEYLEFSSCLFFSNSKQ-DYFPTTLKRL 115 (341)
Q Consensus 40 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~---~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L 115 (341)
..+.+|.++.+ .++.+-+....+..|.+|++++ +++... ++. +.+++.++.+.+ .+..+|. ++..++++++
T Consensus 45 v~l~~lils~N-~l~~l~~dl~nL~~l~vl~~~~-n~l~~lp~aig~--l~~l~~l~vs~n-~ls~lp~~i~s~~~l~~l 119 (565)
T KOG0472|consen 45 VDLQKLILSHN-DLEVLREDLKNLACLTVLNVHD-NKLSQLPAAIGE--LEALKSLNVSHN-KLSELPEQIGSLISLVKL 119 (565)
T ss_pred cchhhhhhccC-chhhccHhhhcccceeEEEecc-chhhhCCHHHHH--HHHHHHhhcccc-hHhhccHHHhhhhhhhhh
Confidence 34556667654 3344434455667777777777 444444 566 666777777664 4555543 4446677777
Q ss_pred EEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCCC-CCccccceEEeeccCCccccCc-ce------eeeCCC
Q 019416 116 KICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPIN-QLPATLRHLRIVNCMNLKSLGE-SS------KIRNCD 185 (341)
Q Consensus 116 ~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~~~~l~~~~~-~l------~l~~~~ 185 (341)
+.+++. +.. ++++++ ..++.++-.+ +++..+|.+ .++.++..+++.+. +++.+|. .+ .+..|+
T Consensus 120 ~~s~n~-~~e----l~~~i~~~~~l~dl~~~~-N~i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~m~~L~~ld~~~ 192 (565)
T KOG0472|consen 120 DCSSNE-LKE----LPDSIGRLLDLEDLDATN-NQISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIAMKRLKHLDCNS 192 (565)
T ss_pred hccccc-eee----cCchHHHHhhhhhhhccc-cccccCchHHHHHHHHHHhhcccc-chhhCCHHHHHHHHHHhcccch
Confidence 777665 233 555555 5555555544 566666655 44555556665553 2333332 00 001111
Q ss_pred CCCcCCCcccccccccc--cccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCC-CCCCcceEeccc
Q 019416 186 SVVGPEGESSLENMTSS--HTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGL-PNTSLTSLLISE 262 (341)
Q Consensus 186 ~l~~~~~~~~~~~l~~~--~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~-~~~~L~~L~l~~ 262 (341)
++-. .+|+. .+..|..|++.+ +++..+| .|.++..|+++.++.+ .++.+|.... .++++..|++.+
T Consensus 193 N~L~--------tlP~~lg~l~~L~~LyL~~-Nki~~lP-ef~gcs~L~Elh~g~N-~i~~lpae~~~~L~~l~vLDLRd 261 (565)
T KOG0472|consen 193 NLLE--------TLPPELGGLESLELLYLRR-NKIRFLP-EFPGCSLLKELHVGEN-QIEMLPAEHLKHLNSLLVLDLRD 261 (565)
T ss_pred hhhh--------cCChhhcchhhhHHHHhhh-cccccCC-CCCccHHHHHHHhccc-HHHhhHHHHhcccccceeeeccc
Confidence 1000 01111 122344445544 3444554 4455555555555542 3443433222 234555555555
Q ss_pred CcccccchhhhccCCCcCeEeecCCCCCccCCCC-CCCCCccEEEeecC
Q 019416 263 CENLMSLPHQIHKATSLQDLSVSGCPSLMSFPHG-GLPPNLISLGIIDC 310 (341)
Q Consensus 263 ~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~c 310 (341)
++++++|..+..+.+|+.|++++ +.+..+|.. +.. .|+.|.+.|+
T Consensus 262 -Nklke~Pde~clLrsL~rLDlSN-N~is~Lp~sLgnl-hL~~L~leGN 307 (565)
T KOG0472|consen 262 -NKLKEVPDEICLLRSLERLDLSN-NDISSLPYSLGNL-HLKFLALEGN 307 (565)
T ss_pred -cccccCchHHHHhhhhhhhcccC-CccccCCcccccc-eeeehhhcCC
Confidence 34555555555555556666554 345545443 223 4444444443
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.06 E-value=5.1e-12 Score=122.35 Aligned_cols=104 Identities=25% Similarity=0.399 Sum_probs=55.5
Q ss_pred cccceEeeccCcCCCcccc-cCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccchhhhccCCCcCeEe
Q 019416 205 LELRELEIWDCLELEFLPE-DMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQIHKATSLQDLS 283 (341)
Q Consensus 205 ~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~ 283 (341)
.+|+.|++++ +.+..+|. .+.++..|++|+++++ .++.+|+....+..|++|...+ +.+..+| .+..++.|+.++
T Consensus 383 ~hLKVLhLsy-NrL~~fpas~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ahs-N~l~~fP-e~~~l~qL~~lD 458 (1081)
T KOG0618|consen 383 KHLKVLHLSY-NRLNSFPASKLRKLEELEELNLSGN-KLTTLPDTVANLGRLHTLRAHS-NQLLSFP-ELAQLPQLKVLD 458 (1081)
T ss_pred cceeeeeecc-cccccCCHHHHhchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhhcC-Cceeech-hhhhcCcceEEe
Confidence 3566666655 23444442 3345556666666662 4555555444445666665554 3455566 455566666666
Q ss_pred ecCCCCCccCCCC-CCC-CCccEEEeecCCCC
Q 019416 284 VSGCPSLMSFPHG-GLP-PNLISLGIIDCENL 313 (341)
Q Consensus 284 l~~c~~l~~~~~~-~~~-~~L~~L~l~~c~~~ 313 (341)
++ |++++.+-.. ..| ++|++|+++++...
T Consensus 459 lS-~N~L~~~~l~~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 459 LS-CNNLSEVTLPEALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred cc-cchhhhhhhhhhCCCcccceeeccCCccc
Confidence 64 4555544332 334 56666666665543
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.06 E-value=8.6e-12 Score=120.80 Aligned_cols=275 Identities=24% Similarity=0.266 Sum_probs=174.8
Q ss_pred cCCCCCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh--hcccCCCCcceEeeecCCCCccccC-CCCCC
Q 019416 34 LGIRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL--LHRMAYTSLEYLEFSSCLFFSNSKQ-DYFPT 110 (341)
Q Consensus 34 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~ 110 (341)
..+..+++|++|....+ .+..+ ...-++|+.|....|.-. .. -.. -.+|++++++.+ .+..+|. ++-+.
T Consensus 193 ~dls~~~~l~~l~c~rn-~ls~l---~~~g~~l~~L~a~~n~l~-~~~~~p~--p~nl~~~dis~n-~l~~lp~wi~~~~ 264 (1081)
T KOG0618|consen 193 LDLSNLANLEVLHCERN-QLSEL---EISGPSLTALYADHNPLT-TLDVHPV--PLNLQYLDISHN-NLSNLPEWIGACA 264 (1081)
T ss_pred hhhhhccchhhhhhhhc-ccceE---EecCcchheeeeccCcce-eeccccc--cccceeeecchh-hhhcchHHHHhcc
Confidence 44556777777766643 22221 112266777777664322 22 223 567888888773 6666764 33478
Q ss_pred CccEEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCCC-CCccccceEEeeccCCccccCc-ceeee----
Q 019416 111 TLKRLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPIN-QLPATLRHLRIVNCMNLKSLGE-SSKIR---- 182 (341)
Q Consensus 111 ~L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~~~~l~~~~~-~l~l~---- 182 (341)
+|+.+....+. +.. +|..+. .+|+.|.... +.+..+|.. ...++|++|++..+ ++..+|. .+.+-
T Consensus 265 nle~l~~n~N~-l~~----lp~ri~~~~~L~~l~~~~-nel~yip~~le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l 337 (1081)
T KOG0618|consen 265 NLEALNANHNR-LVA----LPLRISRITSLVSLSAAY-NELEYIPPFLEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASL 337 (1081)
T ss_pred cceEecccchh-HHh----hHHHHhhhhhHHHHHhhh-hhhhhCCCcccccceeeeeeehhc-cccccchHHHhhhhHHH
Confidence 88888887765 344 665555 7777777765 466666665 33567888888763 4555554 00000
Q ss_pred ---C--CCCCCcCCCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCC-CCCCCcc
Q 019416 183 ---N--CDSVVGPEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGG-LPNTSLT 256 (341)
Q Consensus 183 ---~--~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~-~~~~~L~ 256 (341)
+ +-.+.. +.....+...-|+.|++.++.-....-..+.++++|+.|+++++ .+..+|... ..++.|+
T Consensus 338 ~~ln~s~n~l~~------lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN-rL~~fpas~~~kle~Le 410 (1081)
T KOG0618|consen 338 NTLNVSSNKLST------LPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN-RLNSFPASKLRKLEELE 410 (1081)
T ss_pred HHHhhhhccccc------cccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccc-ccccCCHHHHhchHHhH
Confidence 0 000111 00011112334778888875444444456677899999999994 577777633 3357999
Q ss_pred eEecccCcccccchhhhccCCCcCeEeecCCCCCccCCCCCCCCCccEEEeecCCCCC--ccccccccCCCceeEEEEeC
Q 019416 257 SLLISECENLMSLPHQIHKATSLQDLSVSGCPSLMSFPHGGLPPNLISLGIIDCENLI--PLSQWELHKLKHLNKYTILG 334 (341)
Q Consensus 257 ~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~~~--~~~~~~i~~~~~L~~l~l~~ 334 (341)
+|++++ ++++.+|+.+..+..|++|...+ +++..+|+....++|+++|++ |++++ ..+.. ..+ ++|++|+++|
T Consensus 411 eL~LSG-NkL~~Lp~tva~~~~L~tL~ahs-N~l~~fPe~~~l~qL~~lDlS-~N~L~~~~l~~~-~p~-p~LkyLdlSG 485 (1081)
T KOG0618|consen 411 ELNLSG-NKLTTLPDTVANLGRLHTLRAHS-NQLLSFPELAQLPQLKVLDLS-CNNLSEVTLPEA-LPS-PNLKYLDLSG 485 (1081)
T ss_pred HHhccc-chhhhhhHHHHhhhhhHHHhhcC-CceeechhhhhcCcceEEecc-cchhhhhhhhhh-CCC-cccceeeccC
Confidence 999999 57999999999999999998755 688899976778999999995 45565 22211 122 8999999998
Q ss_pred C
Q 019416 335 G 335 (341)
Q Consensus 335 ~ 335 (341)
|
T Consensus 486 N 486 (1081)
T KOG0618|consen 486 N 486 (1081)
T ss_pred C
Confidence 3
No 17
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.94 E-value=2.1e-11 Score=108.72 Aligned_cols=256 Identities=18% Similarity=0.241 Sum_probs=121.3
Q ss_pred CCCCCcCeEEcCCCCCCcccc-ccc-cCCCCccEEeccCCCCchhh-----hcccCCCCcceEeeecCCCCccccCCC--
Q 019416 37 RTGETLESLEIDNLSSLASFL-RSE-LAATTVKQLKINKCPDLEVL-----LHRMAYTSLEYLEFSSCLFFSNSKQDY-- 107 (341)
Q Consensus 37 ~~~~~L~~L~l~~~~~~~~~~-~~~-~~l~~L~~L~l~~~~~l~~~-----~~~~~l~~L~~L~l~~~~~l~~~~~~~-- 107 (341)
..+|++++|.+.+|..++.-. .++ ..+++|+.|++..|..+.+. .+. +++|++|++++|+.+..-....
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~g--C~kL~~lNlSwc~qi~~~gv~~~~ 238 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEG--CRKLKYLNLSWCPQISGNGVQALQ 238 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHh--hhhHHHhhhccCchhhcCcchHHh
Confidence 457777777777776555321 111 23677777777777766655 456 7777777777776665421111
Q ss_pred -CCCCccEEEEeCCCChHHHHHHhhhhcccccceEeecCCCCccccCCC---CCccccceEEeeccCCccccCcceeeeC
Q 019416 108 -FPTTLKRLKICDCTNAELILKVLMDQKGLALESLEVDGCSSLFSLPIN---QLPATLRHLRIVNCMNLKSLGESSKIRN 183 (341)
Q Consensus 108 -~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~---~~~~~L~~L~l~~~~~l~~~~~~l~l~~ 183 (341)
-...++.+...||...+.-.-.......+-+..+++..|..++..... .....|+.+..++|.++...+..-
T Consensus 239 rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~a---- 314 (483)
T KOG4341|consen 239 RGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWA---- 314 (483)
T ss_pred ccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHH----
Confidence 134456665566654432100000000033445555556555543321 233455666655555433221100
Q ss_pred CCCCCcCCCcccccccccccccccceEeeccCcCCCcccc--cCCCCCCcCeEEeecCCCCcee--cCCCCCCCCcceEe
Q 019416 184 CDSVVGPEGESSLENMTSSHTLELRELEIWDCLELEFLPE--DMHNFTDLNLLSISNCPSLESF--PEGGLPNTSLTSLL 259 (341)
Q Consensus 184 ~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~--~~~~l~~L~~L~l~~c~~l~~~--~~~~~~~~~L~~L~ 259 (341)
+- .++.+|+.+-+.+|..+...-. .-.+++.|+.+++..|..+..- -.-...++.|+.+.
T Consensus 315 ---------------Lg-~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls 378 (483)
T KOG4341|consen 315 ---------------LG-QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS 378 (483)
T ss_pred ---------------Hh-cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence 00 0223466666666655443311 1123456666666655433221 11112234566665
Q ss_pred cccCcccccc-----hhhhccCCCcCeEeecCCCCCccCCCC--CCCCCccEEEeecCCCCC
Q 019416 260 ISECENLMSL-----PHQIHKATSLQDLSVSGCPSLMSFPHG--GLPPNLISLGIIDCENLI 314 (341)
Q Consensus 260 l~~~~~l~~l-----~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~c~~~~ 314 (341)
+++|..++.- ......+..|+.+.+.+|+.+.+-... ..-++|+.+++.+|..+.
T Consensus 379 lshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 379 LSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVT 440 (483)
T ss_pred hhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhh
Confidence 6555433321 222234445555556555554322211 123455556666655554
No 18
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.93 E-value=5.7e-11 Score=105.94 Aligned_cols=267 Identities=17% Similarity=0.245 Sum_probs=162.2
Q ss_pred CCccEEeccCCCCchhh-----hcccCCCCcceEeeecCCCCccccC---CCCCCCccEEEEeCCCChHHH-HHHhhhhc
Q 019416 64 TTVKQLKINKCPDLEVL-----LHRMAYTSLEYLEFSSCLFFSNSKQ---DYFPTTLKRLKICDCTNAELI-LKVLMDQK 134 (341)
Q Consensus 64 ~~L~~L~l~~~~~l~~~-----~~~~~l~~L~~L~l~~~~~l~~~~~---~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~ 134 (341)
--|++|.++||..+..- ... +++++.|.+.+|..+++..- ..+++.|+++.+..|..++.. .+.+.++.
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~--CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC 215 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASN--CPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGC 215 (483)
T ss_pred cccccccccccccCCcchhhHHhhh--CCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhh
Confidence 35677777777654433 556 77777777777765544321 334777888888777766542 11122222
Q ss_pred ccccceEeecCCCCccccCCC---CCccccceEEeeccCCcccc---------Cc--ceeeeCCCCCCc-CCCccccccc
Q 019416 135 GLALESLEVDGCSSLFSLPIN---QLPATLRHLRIVNCMNLKSL---------GE--SSKIRNCDSVVG-PEGESSLENM 199 (341)
Q Consensus 135 ~~~L~~L~l~~~~~l~~l~~~---~~~~~L~~L~l~~~~~l~~~---------~~--~l~l~~~~~l~~-~~~~~~~~~l 199 (341)
++|+++++++|+.++.-... .....++.+...+|..++.- +. .+++..|..+++ .... +
T Consensus 216 -~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~-----i 289 (483)
T KOG4341|consen 216 -RKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWL-----I 289 (483)
T ss_pred -hhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHH-----H
Confidence 78888888888777662221 22234555555555433210 00 333445554554 1110 1
Q ss_pred ccccccccceEeeccCcCCCcccc-c-CCCCCCcCeEEeecCCCCcee--cCCCCCCCCcceEecccCcccc--cchhhh
Q 019416 200 TSSHTLELRELEIWDCLELEFLPE-D-MHNFTDLNLLSISNCPSLESF--PEGGLPNTSLTSLLISECENLM--SLPHQI 273 (341)
Q Consensus 200 ~~~~~~~L~~L~l~~~~~l~~l~~-~-~~~l~~L~~L~l~~c~~l~~~--~~~~~~~~~L~~L~l~~~~~l~--~l~~~l 273 (341)
.-.+++|+.++.++|..+...+- . -.+.++|+.|-++.|..+... ....-.++.|+.+++.+|..+. ++....
T Consensus 290 -~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls 368 (483)
T KOG4341|consen 290 -ACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLS 368 (483)
T ss_pred -hhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhc
Confidence 11355688888888876544321 1 245688999999988765432 1122234688888888875443 233344
Q ss_pred ccCCCcCeEeecCCCCCccCCCC------CCCCCccEEEeecCCCCCccccccccCCCceeEEEEeCCCCCCC
Q 019416 274 HKATSLQDLSVSGCPSLMSFPHG------GLPPNLISLGIIDCENLIPLSQWELHKLKHLNKYTILGGLPVLE 340 (341)
Q Consensus 274 ~~l~~L~~L~l~~c~~l~~~~~~------~~~~~L~~L~l~~c~~~~~~~~~~i~~~~~L~~l~l~~~C~~l~ 340 (341)
.+++.|+.+.+++|..+++.... .....|+++.+.+|+..+....--+.+++.|+.+++.+ |.++.
T Consensus 369 ~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~-~q~vt 440 (483)
T KOG4341|consen 369 RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELID-CQDVT 440 (483)
T ss_pred cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeec-hhhhh
Confidence 67899999999999887655221 12468999999999999832111257889999999999 98764
No 19
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.84 E-value=1.4e-09 Score=109.66 Aligned_cols=81 Identities=19% Similarity=0.205 Sum_probs=44.5
Q ss_pred CCCCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh---hcccCCCCcceEeeecCCCCccccCCCC-CCC
Q 019416 36 IRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL---LHRMAYTSLEYLEFSSCLFFSNSKQDYF-PTT 111 (341)
Q Consensus 36 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~---~~~~~l~~L~~L~l~~~~~l~~~~~~~~-~~~ 111 (341)
|..+|.|++||+++|..+..+|.+++.+-+||.|++++ +.++++ ++. +++|.+|++..+..+..++.... +.+
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~--Lk~L~~Lnl~~~~~l~~~~~i~~~L~~ 643 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGN--LKKLIYLNLEVTGRLESIPGILLELQS 643 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHH--HHhhheeccccccccccccchhhhccc
Confidence 44466666666665555555666555566666666655 445444 555 55666666655444444433322 555
Q ss_pred ccEEEEeC
Q 019416 112 LKRLKICD 119 (341)
Q Consensus 112 L~~L~l~~ 119 (341)
||+|.+.+
T Consensus 644 Lr~L~l~~ 651 (889)
T KOG4658|consen 644 LRVLRLPR 651 (889)
T ss_pred ccEEEeec
Confidence 66655544
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.69 E-value=6.9e-10 Score=87.91 Aligned_cols=126 Identities=14% Similarity=0.098 Sum_probs=87.2
Q ss_pred cCCCCCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh---hcccCCCCcceEeeecCCCCccccC-CCCC
Q 019416 34 LGIRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL---LHRMAYTSLEYLEFSSCLFFSNSKQ-DYFP 109 (341)
Q Consensus 34 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~---~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~ 109 (341)
.++..+.+++.|.++. ++++.+|+.+..+.+|+.|++++ ++++++ +.+ +++|+.|+++- +.+..+|. .+.+
T Consensus 27 ~gLf~~s~ITrLtLSH-NKl~~vppnia~l~nlevln~~n-nqie~lp~~iss--l~klr~lnvgm-nrl~~lprgfgs~ 101 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSH-NKLTVVPPNIAELKNLEVLNLSN-NQIEELPTSISS--LPKLRILNVGM-NRLNILPRGFGSF 101 (264)
T ss_pred ccccchhhhhhhhccc-CceeecCCcHHHhhhhhhhhccc-chhhhcChhhhh--chhhhheecch-hhhhcCccccCCC
Confidence 4566788889999997 47788888888899999999987 678877 888 99999999863 56666765 4558
Q ss_pred CCccEEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCCC-CCccccceEEeec
Q 019416 110 TTLKRLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPIN-QLPATLRHLRIVN 168 (341)
Q Consensus 110 ~~L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~ 168 (341)
|.|+.|++.++..-+.. +|..++ ..|.-|++++ +....+|.. +.+++|+.|.+.+
T Consensus 102 p~levldltynnl~e~~---lpgnff~m~tlralyl~d-ndfe~lp~dvg~lt~lqil~lrd 159 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENS---LPGNFFYMTTLRALYLGD-NDFEILPPDVGKLTNLQILSLRD 159 (264)
T ss_pred chhhhhhcccccccccc---CCcchhHHHHHHHHHhcC-CCcccCChhhhhhcceeEEeecc
Confidence 88999988887533221 555544 5566666655 344445443 3444444444444
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.68 E-value=6.9e-10 Score=87.89 Aligned_cols=148 Identities=26% Similarity=0.322 Sum_probs=91.6
Q ss_pred cccceEeecCCCCccccCCC-CCccccceEEeeccCCccccCcceeeeCCCCCCcCCCcccccccccccccccceEeecc
Q 019416 136 LALESLEVDGCSSLFSLPIN-QLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVGPEGESSLENMTSSHTLELRELEIWD 214 (341)
Q Consensus 136 ~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~ 214 (341)
.+++.|.++. ++++.+|.. ..+.+|+.|++++. .++.+|..+ +++++|+.|.+.-
T Consensus 33 s~ITrLtLSH-NKl~~vppnia~l~nlevln~~nn-qie~lp~~i----------------------ssl~klr~lnvgm 88 (264)
T KOG0617|consen 33 SNITRLTLSH-NKLTVVPPNIAELKNLEVLNLSNN-QIEELPTSI----------------------SSLPKLRILNVGM 88 (264)
T ss_pred hhhhhhhccc-CceeecCCcHHHhhhhhhhhcccc-hhhhcChhh----------------------hhchhhhheecch
Confidence 4455555555 455555554 34456666666552 344443211 2444677666653
Q ss_pred CcCCCcccccCCCCCCcCeEEeecCCCC-ceecCCCCCCCCcceEecccCcccccchhhhccCCCcCeEeecCCCCCccC
Q 019416 215 CLELEFLPEDMHNFTDLNLLSISNCPSL-ESFPEGGLPNTSLTSLLISECENLMSLPHQIHKATSLQDLSVSGCPSLMSF 293 (341)
Q Consensus 215 ~~~l~~l~~~~~~l~~L~~L~l~~c~~l-~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~ 293 (341)
+.+..+|.+|+++|.|+.|++.++.-- ..+|...+.++.|+-|++.+ +.++.+|..++.+++|+.|.+++. .+-++
T Consensus 89 -nrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~dvg~lt~lqil~lrdn-dll~l 165 (264)
T KOG0617|consen 89 -NRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD-NDFEILPPDVGKLTNLQILSLRDN-DLLSL 165 (264)
T ss_pred -hhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcC-CCcccCChhhhhhcceeEEeeccC-chhhC
Confidence 456667888888888888888775422 23444445556777777777 467778877888888888888774 45556
Q ss_pred CCC-CCCCCccEEEeecC
Q 019416 294 PHG-GLPPNLISLGIIDC 310 (341)
Q Consensus 294 ~~~-~~~~~L~~L~l~~c 310 (341)
|.. +-+++|++|++.++
T Consensus 166 pkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 166 PKEIGDLTRLRELHIQGN 183 (264)
T ss_pred cHHHHHHHHHHHHhcccc
Confidence 654 55667777777664
No 22
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.64 E-value=1.6e-07 Score=85.86 Aligned_cols=32 Identities=34% Similarity=0.641 Sum_probs=18.2
Q ss_pred CCcCeEeecCCCCCccCCCCCCCCCccEEEeecC
Q 019416 277 TSLQDLSVSGCPSLMSFPHGGLPPNLISLGIIDC 310 (341)
Q Consensus 277 ~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c 310 (341)
++|++|++.+|..+. +| ..+|.+|+.|++..+
T Consensus 156 sSLk~L~Is~c~~i~-LP-~~LP~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNII-LP-EKLPESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCccc-Cc-ccccccCcEEEeccc
Confidence 356777776665432 22 235666777776543
No 23
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.58 E-value=4e-07 Score=83.29 Aligned_cols=137 Identities=24% Similarity=0.361 Sum_probs=81.2
Q ss_pred hcccCCCCcceEeeecCCCCccccCCCCCCCccEEEEeCCCChHHHHHHhhhhcccccceEeecCCCCccccCCCCCccc
Q 019416 81 LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLKRLKICDCTNAELILKVLMDQKGLALESLEVDGCSSLFSLPINQLPAT 160 (341)
Q Consensus 81 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~ 160 (341)
+.. +.++..|++++| .+..+| .++++|++|.+++|..+.. +|..+-++|++|.+.+|..+..+| ++
T Consensus 48 ~~~--~~~l~~L~Is~c-~L~sLP--~LP~sLtsL~Lsnc~nLts----LP~~LP~nLe~L~Ls~Cs~L~sLP-----~s 113 (426)
T PRK15386 48 IEE--ARASGRLYIKDC-DIESLP--VLPNELTEITIENCNNLTT----LPGSIPEGLEKLTVCHCPEISGLP-----ES 113 (426)
T ss_pred HHH--hcCCCEEEeCCC-CCcccC--CCCCCCcEEEccCCCCccc----CCchhhhhhhheEccCcccccccc-----cc
Confidence 556 778888888877 677777 3567788888888887766 665443678888888876665444 46
Q ss_pred cceEEeeccCCccccCcceeeeCCCCCCcCCCcccccccccccccccceEeeccCcCC--CcccccCCCCCCcCeEEeec
Q 019416 161 LRHLRIVNCMNLKSLGESSKIRNCDSVVGPEGESSLENMTSSHTLELRELEIWDCLEL--EFLPEDMHNFTDLNLLSISN 238 (341)
Q Consensus 161 L~~L~l~~~~~l~~~~~~l~l~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l--~~l~~~~~~l~~L~~L~l~~ 238 (341)
|++|++.. .....++ .+|.+ |+.|.+.++... ..++..+ .++|++|++++
T Consensus 114 Le~L~L~~-n~~~~L~---------------------~LPss----Lk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~ 165 (426)
T PRK15386 114 VRSLEIKG-SATDSIK---------------------NVPNG----LTSLSINSYNPENQARIDNLI--SPSLKTLSLTG 165 (426)
T ss_pred cceEEeCC-CCCcccc---------------------cCcch----Hhheecccccccccccccccc--CCcccEEEecC
Confidence 77777653 2221111 15544 666666443211 1111111 24677777777
Q ss_pred CCCCceecCCCCCCCCcceEeccc
Q 019416 239 CPSLESFPEGGLPNTSLTSLLISE 262 (341)
Q Consensus 239 c~~l~~~~~~~~~~~~L~~L~l~~ 262 (341)
|..+. +| ..+| .+|++|+++.
T Consensus 166 c~~i~-LP-~~LP-~SLk~L~ls~ 186 (426)
T PRK15386 166 CSNII-LP-EKLP-ESLQSITLHI 186 (426)
T ss_pred CCccc-Cc-cccc-ccCcEEEecc
Confidence 65432 22 2234 4777777654
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.50 E-value=5.6e-08 Score=87.90 Aligned_cols=83 Identities=14% Similarity=0.080 Sum_probs=39.7
Q ss_pred CCCCCcCeEEcCCCCCC----ccccccccCCCCccEEeccCCCCc------hhh---hcccCCCCcceEeeecCCCCccc
Q 019416 37 RTGETLESLEIDNLSSL----ASFLRSELAATTVKQLKINKCPDL------EVL---LHRMAYTSLEYLEFSSCLFFSNS 103 (341)
Q Consensus 37 ~~~~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~l------~~~---~~~~~l~~L~~L~l~~~~~l~~~ 103 (341)
..++.|++|+++++... ..++......++|+.++++++..- ..+ +.. +++|+.|++++|......
T Consensus 20 ~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~ 97 (319)
T cd00116 20 PKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTK--GCGLQELDLSDNALGPDG 97 (319)
T ss_pred HHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHh--cCceeEEEccCCCCChhH
Confidence 34555777777765421 112333334566777777664221 111 445 566777777665332111
Q ss_pred cC-CCCC---CCccEEEEeCCC
Q 019416 104 KQ-DYFP---TTLKRLKICDCT 121 (341)
Q Consensus 104 ~~-~~~~---~~L~~L~l~~~~ 121 (341)
+. ...+ ++|++|++++|.
T Consensus 98 ~~~~~~l~~~~~L~~L~ls~~~ 119 (319)
T cd00116 98 CGVLESLLRSSSLQELKLNNNG 119 (319)
T ss_pred HHHHHHHhccCcccEEEeeCCc
Confidence 11 0111 336666666664
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.43 E-value=2.3e-07 Score=83.87 Aligned_cols=246 Identities=16% Similarity=0.079 Sum_probs=136.2
Q ss_pred ccCCCCccEEeccCCCCc----hhh---hcccCCCCcceEeeecCCCCcccc--------CCCCCCCccEEEEeCCCChH
Q 019416 60 ELAATTVKQLKINKCPDL----EVL---LHRMAYTSLEYLEFSSCLFFSNSK--------QDYFPTTLKRLKICDCTNAE 124 (341)
Q Consensus 60 ~~~l~~L~~L~l~~~~~l----~~~---~~~~~l~~L~~L~l~~~~~l~~~~--------~~~~~~~L~~L~l~~~~~~~ 124 (341)
+..+.+|++|++++|.-- ..+ +.. .++|+.++++++. +...+ ....+++|++|++++|....
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~--~~~l~~l~l~~~~-~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 95 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALASALRP--QPSLKELCLSLNE-TGRIPRGLQSLLQGLTKGCGLQELDLSDNALGP 95 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHHHHhh--CCCceEEeccccc-cCCcchHHHHHHHHHHhcCceeEEEccCCCCCh
Confidence 344677999999996531 122 566 7789999998753 33111 11226799999999987543
Q ss_pred HHHHHhhhhcc-----cccceEeecCCCCccc----cCCC-CCc-cccceEEeeccCCcccc-CcceeeeCCCCCCcCCC
Q 019416 125 LILKVLMDQKG-----LALESLEVDGCSSLFS----LPIN-QLP-ATLRHLRIVNCMNLKSL-GESSKIRNCDSVVGPEG 192 (341)
Q Consensus 125 ~~~~~~~~~~~-----~~L~~L~l~~~~~l~~----l~~~-~~~-~~L~~L~l~~~~~l~~~-~~~l~l~~~~~l~~~~~ 192 (341)
. .+..+. ++|++|++++|..-.. +... ... ++|+.|++++|. ++.- ...+
T Consensus 96 ~----~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~------------- 157 (319)
T cd00116 96 D----GCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEAL------------- 157 (319)
T ss_pred h----HHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHH-------------
Confidence 3 222222 3499999988643210 1011 122 678888888764 2200 0000
Q ss_pred cccccccccccccccceEeeccCcCC----CcccccCCCCCCcCeEEeecCCCC----ceecCCCCCCCCcceEecccCc
Q 019416 193 ESSLENMTSSHTLELRELEIWDCLEL----EFLPEDMHNFTDLNLLSISNCPSL----ESFPEGGLPNTSLTSLLISECE 264 (341)
Q Consensus 193 ~~~~~~l~~~~~~~L~~L~l~~~~~l----~~l~~~~~~l~~L~~L~l~~c~~l----~~~~~~~~~~~~L~~L~l~~~~ 264 (341)
...+. .+++|++|++.+|.-. ..++..+...++|+.|++++|.-- ..+......+++|++|++++|.
T Consensus 158 ---~~~~~--~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 158 ---AKALR--ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred ---HHHHH--hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc
Confidence 00011 3346889998886432 123334445578999999887421 1111111224689999998864
Q ss_pred ccccc-----hhhh-ccCCCcCeEeecCCCCCcc-----CCCC-CCCCCccEEEeecCCCCCc----cccccccCC-Cce
Q 019416 265 NLMSL-----PHQI-HKATSLQDLSVSGCPSLMS-----FPHG-GLPPNLISLGIIDCENLIP----LSQWELHKL-KHL 327 (341)
Q Consensus 265 ~l~~l-----~~~l-~~l~~L~~L~l~~c~~l~~-----~~~~-~~~~~L~~L~l~~c~~~~~----~~~~~i~~~-~~L 327 (341)
++.. ...+ ...+.|++|++.+| .+++ +... ...++|+.++++++..-.. ... .+... .+|
T Consensus 233 -l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~-~~~~~~~~~ 309 (319)
T cd00116 233 -LTDAGAAALASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAE-SLLEPGNEL 309 (319)
T ss_pred -CchHHHHHHHHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHH-HHhhcCCch
Confidence 5421 1111 12478899999876 3431 1111 1236888888888754431 111 12333 688
Q ss_pred eEEEEeC
Q 019416 328 NKYTILG 334 (341)
Q Consensus 328 ~~l~l~~ 334 (341)
+++++.+
T Consensus 310 ~~~~~~~ 316 (319)
T cd00116 310 ESLWVKD 316 (319)
T ss_pred hhcccCC
Confidence 8888776
No 26
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.42 E-value=2.2e-08 Score=89.17 Aligned_cols=86 Identities=16% Similarity=0.310 Sum_probs=59.8
Q ss_pred ccCCCCCCcCeEEeecCCCCceecCCCC-CCCCcceEecccCcccccchh-hhccCCCcCeEeecCCCCCccCCCCCC--
Q 019416 223 EDMHNFTDLNLLSISNCPSLESFPEGGL-PNTSLTSLLISECENLMSLPH-QIHKATSLQDLSVSGCPSLMSFPHGGL-- 298 (341)
Q Consensus 223 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~-~~~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~~~~~~~-- 298 (341)
..|..+++|+.|+++++ .++.+.++.+ ....++.|.+.+ ++++.+.. .++++..|+.|++.+ ++|+.+..+.|
T Consensus 268 ~cf~~L~~L~~lnlsnN-~i~~i~~~aFe~~a~l~eL~L~~-N~l~~v~~~~f~~ls~L~tL~L~~-N~it~~~~~aF~~ 344 (498)
T KOG4237|consen 268 KCFKKLPNLRKLNLSNN-KITRIEDGAFEGAAELQELYLTR-NKLEFVSSGMFQGLSGLKTLSLYD-NQITTVAPGAFQT 344 (498)
T ss_pred HHHhhcccceEeccCCC-ccchhhhhhhcchhhhhhhhcCc-chHHHHHHHhhhccccceeeeecC-CeeEEEecccccc
Confidence 34677888888888884 4555555332 245788888887 46877765 467888888888877 57777766544
Q ss_pred CCCccEEEeecCC
Q 019416 299 PPNLISLGIIDCE 311 (341)
Q Consensus 299 ~~~L~~L~l~~c~ 311 (341)
..+|.+|.+..++
T Consensus 345 ~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 345 LFSLSTLNLLSNP 357 (498)
T ss_pred cceeeeeehccCc
Confidence 4578888776643
No 27
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.38 E-value=6.4e-09 Score=92.45 Aligned_cols=259 Identities=15% Similarity=0.164 Sum_probs=134.7
Q ss_pred CCCCCCCCCCchhhhhhcccCCC--ccc-cCCCCCCCcCeEEcCCCCCCccc-cccccCCCCccEEeccCCCCchhh---
Q 019416 8 PFDLEPQAPVPKNFLALALFPDE--DKI-LGIRTGETLESLEIDNLSSLASF-LRSELAATTVKQLKINKCPDLEVL--- 80 (341)
Q Consensus 8 ~~~~~~~~~~~~~~~~l~~~~~~--~~~-~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~--- 80 (341)
..-+..+..+|....++.+-.+. .++ ..|+.+++|++|||++| .++.+ |..+.++++|.+|.+.+++++.++
T Consensus 56 ~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~ 134 (498)
T KOG4237|consen 56 KGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPKG 134 (498)
T ss_pred CCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhhh
Confidence 33445555566655555553332 111 24667788888888875 34444 666777788888877777777766
Q ss_pred -hcccCCCCcceEeeecCCCCccccCCC--CCCCccEEEEeCCCChHHHHHHhhhhcc---cccceEeecCCCCcc----
Q 019416 81 -LHRMAYTSLEYLEFSSCLFFSNSKQDY--FPTTLKRLKICDCTNAELILKVLMDQKG---LALESLEVDGCSSLF---- 150 (341)
Q Consensus 81 -~~~~~l~~L~~L~l~~~~~l~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~l~---- 150 (341)
|++ +.+|+-|.+.-+ .+..+.... -++++..|.++++. +.. ++.+.. .+++.+.+...+.+-
T Consensus 135 ~F~g--L~slqrLllNan-~i~Cir~~al~dL~~l~lLslyDn~-~q~----i~~~tf~~l~~i~tlhlA~np~icdCnL 206 (498)
T KOG4237|consen 135 AFGG--LSSLQRLLLNAN-HINCIRQDALRDLPSLSLLSLYDNK-IQS----ICKGTFQGLAAIKTLHLAQNPFICDCNL 206 (498)
T ss_pred Hhhh--HHHHHHHhcChh-hhcchhHHHHHHhhhcchhcccchh-hhh----hccccccchhccchHhhhcCcccccccc
Confidence 666 666666666332 344443322 25666666776653 344 333222 444444333222110
Q ss_pred --------ccCCC-CCccccceEEeecc-----------CCccccCcceeeeCC-CCCCcCCCcccccccccccccccce
Q 019416 151 --------SLPIN-QLPATLRHLRIVNC-----------MNLKSLGESSKIRNC-DSVVGPEGESSLENMTSSHTLELRE 209 (341)
Q Consensus 151 --------~l~~~-~~~~~L~~L~l~~~-----------~~l~~~~~~l~l~~~-~~l~~~~~~~~~~~l~~~~~~~L~~ 209 (341)
..+.. +...-.....+.+. ...+.++..+. +.| +....|.. .|+ .+++|++
T Consensus 207 ~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~-~~d~~d~~cP~~--cf~-----~L~~L~~ 278 (498)
T KOG4237|consen 207 PWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLS-SEDFPDSICPAK--CFK-----KLPNLRK 278 (498)
T ss_pred chhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhc-cccCcCCcChHH--HHh-----hcccceE
Confidence 00000 00000000000000 00111111110 111 00000111 122 3447999
Q ss_pred EeeccCcCCCcc-cccCCCCCCcCeEEeecCCCCceecCCCC-CCCCcceEecccCcccccc-hhhhccCCCcCeEeecC
Q 019416 210 LEIWDCLELEFL-PEDMHNFTDLNLLSISNCPSLESFPEGGL-PNTSLTSLLISECENLMSL-PHQIHKATSLQDLSVSG 286 (341)
Q Consensus 210 L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~~~~~~~-~~~~L~~L~l~~~~~l~~l-~~~l~~l~~L~~L~l~~ 286 (341)
+.++++ +++.+ +.+|.+...+++|.+..+ .++.+..+.+ ....|+.|++.++ +++.+ |..++.+.+|.+|.+-.
T Consensus 279 lnlsnN-~i~~i~~~aFe~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~N-~it~~~~~aF~~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 279 LNLSNN-KITRIEDGAFEGAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYDN-QITTVAPGAFQTLFSLSTLNLLS 355 (498)
T ss_pred eccCCC-ccchhhhhhhcchhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecCC-eeEEEecccccccceeeeeehcc
Confidence 999985 44444 678888899999998874 4555544322 2458899999984 67766 44677777888888754
No 28
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.38 E-value=2.4e-07 Score=93.72 Aligned_cols=269 Identities=20% Similarity=0.143 Sum_probs=148.4
Q ss_pred CCCCCcCeEEcCCCCC-Ccccccc-ccCCCCccEEeccCCCCchhh---hcccCCCCcceEeeecCCCCccccC-CCCCC
Q 019416 37 RTGETLESLEIDNLSS-LASFLRS-ELAATTVKQLKINKCPDLEVL---LHRMAYTSLEYLEFSSCLFFSNSKQ-DYFPT 110 (341)
Q Consensus 37 ~~~~~L~~L~l~~~~~-~~~~~~~-~~~l~~L~~L~l~~~~~l~~~---~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~ 110 (341)
..+++|++|-+.++.. +..++.. +..++.|++|++++|..+..+ ++. +.+|++|+++++ .+..+|. .+.+.
T Consensus 542 ~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~--Li~LryL~L~~t-~I~~LP~~l~~Lk 618 (889)
T KOG4658|consen 542 SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE--LVHLRYLDLSDT-GISHLPSGLGNLK 618 (889)
T ss_pred CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh--hhhhhcccccCC-CccccchHHHHHH
Confidence 4566788888887642 4444333 455788888888877666665 777 888888888874 6777765 34577
Q ss_pred CccEEEEeCCCChHHHHHHhhhhcc--cccceEeecCCC-CccccC--CCCCccccceEEeeccCCccccCcceeeeCCC
Q 019416 111 TLKRLKICDCTNAELILKVLMDQKG--LALESLEVDGCS-SLFSLP--INQLPATLRHLRIVNCMNLKSLGESSKIRNCD 185 (341)
Q Consensus 111 ~L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~-~l~~l~--~~~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~ 185 (341)
.|.+|++..+..+.. +|.... ++|++|.+-.-. ..+..- ....+.+|+.+.+..... ..+-.
T Consensus 619 ~L~~Lnl~~~~~l~~----~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~-------- 685 (889)
T KOG4658|consen 619 KLIYLNLEVTGRLES----IPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLED-------- 685 (889)
T ss_pred hhheecccccccccc----ccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhHhh--------
Confidence 888888877665554 332222 777777764311 111100 012334444444433221 00000
Q ss_pred CCCcCCCcccccccccccccccc----eEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecC----CC-CC-CCCc
Q 019416 186 SVVGPEGESSLENMTSSHTLELR----ELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPE----GG-LP-NTSL 255 (341)
Q Consensus 186 ~l~~~~~~~~~~~l~~~~~~~L~----~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~----~~-~~-~~~L 255 (341)
+- .+++|+ .+.+.+ ......+..+..+.+|+.|.+.+|...+.... .. .. ++++
T Consensus 686 -------------l~--~~~~L~~~~~~l~~~~-~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l 749 (889)
T KOG4658|consen 686 -------------LL--GMTRLRSLLQSLSIEG-CSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNL 749 (889)
T ss_pred -------------hh--hhHHHHHHhHhhhhcc-cccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHH
Confidence 00 111222 233322 22334455667788999999999876432211 11 11 3467
Q ss_pred ceEecccCcccccchhhhccCCCcCeEeecCCCCCccCCCC-CCC----------CCccEE-EeecCCCCCccccccccC
Q 019416 256 TSLLISECENLMSLPHQIHKATSLQDLSVSGCPSLMSFPHG-GLP----------PNLISL-GIIDCENLIPLSQWELHK 323 (341)
Q Consensus 256 ~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~-~~~----------~~L~~L-~l~~c~~~~~~~~~~i~~ 323 (341)
..+.+.+|...+.+. ...-.++|+.|.+..|..++++... ... ..++.+ .+.+...+..+ .|.=-.
T Consensus 750 ~~~~~~~~~~~r~l~-~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i-~~~~l~ 827 (889)
T KOG4658|consen 750 SKVSILNCHMLRDLT-WLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQL-YWLPLS 827 (889)
T ss_pred HHHHhhccccccccc-hhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCcee-EecccC
Confidence 777777777666543 3345689999999999877655432 112 233333 23333333211 000012
Q ss_pred CCceeEEEEeCCCCCCC
Q 019416 324 LKHLNKYTILGGLPVLE 340 (341)
Q Consensus 324 ~~~L~~l~l~~~C~~l~ 340 (341)
...++.+.+.. ||+++
T Consensus 828 ~~~l~~~~ve~-~p~l~ 843 (889)
T KOG4658|consen 828 FLKLEELIVEE-CPKLG 843 (889)
T ss_pred ccchhheehhc-Ccccc
Confidence 34588888888 88875
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=7.2e-07 Score=80.63 Aligned_cols=126 Identities=17% Similarity=0.147 Sum_probs=82.2
Q ss_pred CCCCcCeEEcCCCCCCccccc--cccCCCCccEEeccCCCCchhh------hcccCCCCcceEeeecCCCCccccC--CC
Q 019416 38 TGETLESLEIDNLSSLASFLR--SELAATTVKQLKINKCPDLEVL------LHRMAYTSLEYLEFSSCLFFSNSKQ--DY 107 (341)
Q Consensus 38 ~~~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~l~~~------~~~~~l~~L~~L~l~~~~~l~~~~~--~~ 107 (341)
.+.+|+...|.+++ +...+. -...|++++.|++++ +-+..+ .+. +++|+.|+++.+....-... ..
T Consensus 119 n~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~-NL~~nw~~v~~i~eq--Lp~Le~LNls~Nrl~~~~~s~~~~ 194 (505)
T KOG3207|consen 119 NLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSR-NLFHNWFPVLKIAEQ--LPSLENLNLSSNRLSNFISSNTTL 194 (505)
T ss_pred hHHhhhheeecCcc-ccccchhhhhhhCCcceeecchh-hhHHhHHHHHHHHHh--cccchhcccccccccCCccccchh
Confidence 58889999999763 333332 244689999999998 444443 788 99999999998644332222 33
Q ss_pred CCCCccEEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCcc-ccCCCCCccccceEEeeccC
Q 019416 108 FPTTLKRLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLF-SLPINQLPATLRHLRIVNCM 170 (341)
Q Consensus 108 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~-~l~~~~~~~~L~~L~l~~~~ 170 (341)
.++.|+.|.++.|..... .+..... |+|+.|++.++..+. .......+..|+.|++++.+
T Consensus 195 ~l~~lK~L~l~~CGls~k---~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~ 257 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWK---DVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN 257 (505)
T ss_pred hhhhhheEEeccCCCCHH---HHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc
Confidence 589999999999974321 1211111 999999998854222 11122445677777777654
No 30
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=5.8e-08 Score=83.55 Aligned_cols=176 Identities=19% Similarity=0.253 Sum_probs=89.8
Q ss_pred cCeEEcCCCCCCcc--ccccccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccC---CCCCCCc
Q 019416 42 LESLEIDNLSSLAS--FLRSELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQ---DYFPTTL 112 (341)
Q Consensus 42 L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~---~~~~~~L 112 (341)
|++|||++. .++. +-....+|.+|+.|.+.| ..+.+- +.+ -.+|+.++++.|..+..... +..+..|
T Consensus 187 lq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg-~~LdD~I~~~iAk--N~~L~~lnlsm~sG~t~n~~~ll~~scs~L 262 (419)
T KOG2120|consen 187 LQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEG-LRLDDPIVNTIAK--NSNLVRLNLSMCSGFTENALQLLLSSCSRL 262 (419)
T ss_pred hHHhhcchh-heeHHHHHHHHHHHHhhhhccccc-cccCcHHHHHHhc--cccceeeccccccccchhHHHHHHHhhhhH
Confidence 666666642 2221 111234456666666665 333332 445 56666666666655554432 2235666
Q ss_pred cEEEEeCCCChHHHHHHhhhhcccccceEeecCCCCccccCCCCCccccceEEeeccCCccccCcceeeeCCCCCCcCCC
Q 019416 113 KRLKICDCTNAELILKVLMDQKGLALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVGPEG 192 (341)
Q Consensus 113 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~~~~ 192 (341)
..|++++|......-..+-.+++++|+.|+++||...-.... +..
T Consensus 263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh-----------------~~t------------------ 307 (419)
T KOG2120|consen 263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSH-----------------LST------------------ 307 (419)
T ss_pred hhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhH-----------------HHH------------------
Confidence 666666666544321111222225556666655432211110 000
Q ss_pred cccccccccccccccceEeeccCcCCCc-ccccCCCCCCcCeEEeecCCCCc--eecC-CCCCCCCcceEecccCcc
Q 019416 193 ESSLENMTSSHTLELRELEIWDCLELEF-LPEDMHNFTDLNLLSISNCPSLE--SFPE-GGLPNTSLTSLLISECEN 265 (341)
Q Consensus 193 ~~~~~~l~~~~~~~L~~L~l~~~~~l~~-l~~~~~~l~~L~~L~l~~c~~l~--~~~~-~~~~~~~L~~L~l~~~~~ 265 (341)
+ ...++++..|++++|..++. ....+..++.|++|+++.|..+. .+-+ .. .|+|.+|++.+|-.
T Consensus 308 ------L-~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s--~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 308 ------L-VRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNS--KPSLVYLDVFGCVS 375 (419)
T ss_pred ------H-HHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeecc--CcceEEEEeccccC
Confidence 0 01334577777777766644 22344567888888888886542 1111 22 25888888888753
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.14 E-value=1.4e-06 Score=71.06 Aligned_cols=120 Identities=19% Similarity=0.247 Sum_probs=47.0
Q ss_pred ccceEeeccCcCCCcccccCC-CCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccchhhh-ccCCCcCeEe
Q 019416 206 ELRELEIWDCLELEFLPEDMH-NFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQI-HKATSLQDLS 283 (341)
Q Consensus 206 ~L~~L~l~~~~~l~~l~~~~~-~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l-~~l~~L~~L~ 283 (341)
+++.|++.++ .+..+ +.+. .+.+|+.|++++| .++.++.. -.+++|++|+++++ .++++.+++ ..+++|++|.
T Consensus 20 ~~~~L~L~~n-~I~~I-e~L~~~l~~L~~L~Ls~N-~I~~l~~l-~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGN-QISTI-ENLGATLDKLEVLDLSNN-QITKLEGL-PGLPRLKTLDLSNN-RISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS---S--TT-----TT--EEE--SS----S-CHHHHHH-TT--EEE
T ss_pred cccccccccc-ccccc-cchhhhhcCCCEEECCCC-CCccccCc-cChhhhhhcccCCC-CCCccccchHHhCCcCCEEE
Confidence 4788888885 33444 3444 4678999999986 45555432 22469999999984 688886655 4689999999
Q ss_pred ecCCCCCccCCCC---CCCCCccEEEeecCCCCC--ccccccccCCCceeEEE
Q 019416 284 VSGCPSLMSFPHG---GLPPNLISLGIIDCENLI--PLSQWELHKLKHLNKYT 331 (341)
Q Consensus 284 l~~c~~l~~~~~~---~~~~~L~~L~l~~c~~~~--~~~~~~i~~~~~L~~l~ 331 (341)
+++ +.+.++..- ..+++|++|++.+++... ..-.+.+..+++|+.|+
T Consensus 95 L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 95 LSN-NKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp -TT-S---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred CcC-CcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 977 677777653 236889999998887554 22233567778888875
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=1.3e-06 Score=78.92 Aligned_cols=81 Identities=12% Similarity=0.138 Sum_probs=34.5
Q ss_pred CCCcceEeeecCCCCccccC---CCCCCCccEEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCCC--CCc
Q 019416 86 YTSLEYLEFSSCLFFSNSKQ---DYFPTTLKRLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPIN--QLP 158 (341)
Q Consensus 86 l~~L~~L~l~~~~~l~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~--~~~ 158 (341)
+.+|+.+.+.++ .+...+. ...+++++.|+++++- +..+ ..+-.... |+|+.|+++.+...-..... ..+
T Consensus 120 ~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL-~~nw-~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 120 LKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNL-FHNW-FPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred HHhhhheeecCc-cccccchhhhhhhCCcceeecchhhh-HHhH-HHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 445555555543 3333332 1125666666666542 1110 00111111 66666666552221111111 234
Q ss_pred cccceEEeecc
Q 019416 159 ATLRHLRIVNC 169 (341)
Q Consensus 159 ~~L~~L~l~~~ 169 (341)
++|+.|.+++|
T Consensus 197 ~~lK~L~l~~C 207 (505)
T KOG3207|consen 197 SHLKQLVLNSC 207 (505)
T ss_pred hhhheEEeccC
Confidence 55666666655
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.94 E-value=9e-06 Score=66.41 Aligned_cols=100 Identities=17% Similarity=0.148 Sum_probs=22.9
Q ss_pred CCccEEeccCCCCchhh--hc-ccCCCCcceEeeecCCCCccccCCCCCCCccEEEEeCCCChHHHHHHhhhhcccccce
Q 019416 64 TTVKQLKINKCPDLEVL--LH-RMAYTSLEYLEFSSCLFFSNSKQDYFPTTLKRLKICDCTNAELILKVLMDQKGLALES 140 (341)
Q Consensus 64 ~~L~~L~l~~~~~l~~~--~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 140 (341)
.++++|++.+ +.+..+ ++ . +.+|+.|++++| .+..+.....++.|+.|++++|. +..+.+.+...+ |+|++
T Consensus 19 ~~~~~L~L~~-n~I~~Ie~L~~~--l~~L~~L~Ls~N-~I~~l~~l~~L~~L~~L~L~~N~-I~~i~~~l~~~l-p~L~~ 92 (175)
T PF14580_consen 19 VKLRELNLRG-NQISTIENLGAT--LDKLEVLDLSNN-QITKLEGLPGLPRLKTLDLSNNR-ISSISEGLDKNL-PNLQE 92 (175)
T ss_dssp ------------------S--TT---TT--EEE-TTS---S--TT----TT--EEE--SS----S-CHHHHHH--TT--E
T ss_pred cccccccccc-cccccccchhhh--hcCCCEEECCCC-CCccccCccChhhhhhcccCCCC-CCccccchHHhC-CcCCE
Confidence 3445555555 233333 22 3 455555555553 45555444445555666655554 222000011111 56666
Q ss_pred EeecCCCCccccCCC---CCccccceEEeeccC
Q 019416 141 LEVDGCSSLFSLPIN---QLPATLRHLRIVNCM 170 (341)
Q Consensus 141 L~l~~~~~l~~l~~~---~~~~~L~~L~l~~~~ 170 (341)
|++++ +.+..+... ..+++|+.|++.+++
T Consensus 93 L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 93 LYLSN-NKISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp EE-TT-S---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred EECcC-CcCCChHHhHHHHcCCCcceeeccCCc
Confidence 66654 344443322 234667777766543
No 34
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=7e-07 Score=77.02 Aligned_cols=134 Identities=16% Similarity=0.259 Sum_probs=94.0
Q ss_pred CCCCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh-----hcccCCCCcceEeeecCCCCccccC---CC
Q 019416 36 IRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL-----LHRMAYTSLEYLEFSSCLFFSNSKQ---DY 107 (341)
Q Consensus 36 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-----~~~~~l~~L~~L~l~~~~~l~~~~~---~~ 107 (341)
+..|++|+.|.+.+..--..+-..+..-.+|+.|+++.|+.+... +.+ +..|+.|++++|......-. ..
T Consensus 206 Ls~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~s--cs~L~~LNlsWc~l~~~~Vtv~V~h 283 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSS--CSRLDELNLSWCFLFTEKVTVAVAH 283 (419)
T ss_pred HHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHh--hhhHhhcCchHhhccchhhhHHHhh
Confidence 457999999999986433333333455589999999999988765 889 99999999999855444321 22
Q ss_pred CCCCccEEEEeCCCChHHHHH--HhhhhcccccceEeecCCCCccccCC--CCCccccceEEeeccCCc
Q 019416 108 FPTTLKRLKICDCTNAELILK--VLMDQKGLALESLEVDGCSSLFSLPI--NQLPATLRHLRIVNCMNL 172 (341)
Q Consensus 108 ~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~~~~L~~L~l~~~~~l 172 (341)
.-++|+.|+++||..--+... .+..-. |++.+|++++|..++.--. ...++.|++|.++.|+.+
T Consensus 284 ise~l~~LNlsG~rrnl~~sh~~tL~~rc-p~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i 351 (419)
T KOG2120|consen 284 ISETLTQLNLSGYRRNLQKSHLSTLVRRC-PNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI 351 (419)
T ss_pred hchhhhhhhhhhhHhhhhhhHHHHHHHhC-CceeeeccccccccCchHHHHHHhcchheeeehhhhcCC
Confidence 358899999999863221000 011111 9999999999988875111 134578999999999865
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.81 E-value=5.1e-06 Score=71.92 Aligned_cols=43 Identities=21% Similarity=0.026 Sum_probs=23.0
Q ss_pred chhhhcccCCCCcceEeeecCCCCc---cc-cC-----CCCCCCccEEEEeCCC
Q 019416 77 LEVLLHRMAYTSLEYLEFSSCLFFS---NS-KQ-----DYFPTTLKRLKICDCT 121 (341)
Q Consensus 77 l~~~~~~~~l~~L~~L~l~~~~~l~---~~-~~-----~~~~~~L~~L~l~~~~ 121 (341)
+.++++. +..|++|.++...... ++ +. ...+++|+.+.++.|.
T Consensus 174 ~~hildf--~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~ 225 (490)
T KOG1259|consen 174 FSHVLDF--CTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALS 225 (490)
T ss_pred hHHHHHh--hhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccc
Confidence 3344666 6777777776543211 11 11 1125777777777765
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.80 E-value=3.1e-05 Score=51.61 Aligned_cols=54 Identities=24% Similarity=0.389 Sum_probs=40.4
Q ss_pred CCcCeEEcCCCCCCccccc-cccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecC
Q 019416 40 ETLESLEIDNLSSLASFLR-SELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSC 97 (341)
Q Consensus 40 ~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~ 97 (341)
|+|++|++++| .++.+|. .+.++++|++|++++ +.+..+ +.. +++|++|++++|
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~f~~--l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPDAFSN--LPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETS-SSESEEETTTTTT--STTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccC-CccCccCHHHHcC--CCCCCEEeCcCC
Confidence 57888888876 6667764 466788888888886 556555 777 888888888775
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.71 E-value=4.9e-05 Score=71.00 Aligned_cols=169 Identities=23% Similarity=0.265 Sum_probs=100.1
Q ss_pred ccCCCCccEEeccCCCCchhh---hcccCCC-CcceEeeecCCCCcccc-CCCCCCCccEEEEeCCCChHHHHHHhhhhc
Q 019416 60 ELAATTVKQLKINKCPDLEVL---LHRMAYT-SLEYLEFSSCLFFSNSK-QDYFPTTLKRLKICDCTNAELILKVLMDQK 134 (341)
Q Consensus 60 ~~~l~~L~~L~l~~~~~l~~~---~~~~~l~-~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 134 (341)
...++.++.|.+.+ +.+.++ ... +. +|+.|+++++ .+..++ ....+++|+.|.+++|. +.. +|...
T Consensus 112 ~~~~~~l~~L~l~~-n~i~~i~~~~~~--~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~-l~~----l~~~~ 182 (394)
T COG4886 112 LLELTNLTSLDLDN-NNITDIPPLIGL--LKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFND-LSD----LPKLL 182 (394)
T ss_pred hhcccceeEEecCC-cccccCcccccc--chhhccccccccc-chhhhhhhhhccccccccccCCch-hhh----hhhhh
Confidence 34456777777776 455555 444 43 7888888763 666663 45667888888888775 444 55544
Q ss_pred -c-cccceEeecCCCCccccCCC-CCccccceEEeeccCCccccCcceeeeCCCCCCcCCCcccccccccccccccceEe
Q 019416 135 -G-LALESLEVDGCSSLFSLPIN-QLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVGPEGESSLENMTSSHTLELRELE 211 (341)
Q Consensus 135 -~-~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~ 211 (341)
. ++|+.|++++ +.+..++.. ..+..|+++.+++...++.+.. + ..+.++..+.
T Consensus 183 ~~~~~L~~L~ls~-N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~---------------------~--~~~~~l~~l~ 238 (394)
T COG4886 183 SNLSNLNNLDLSG-NKISDLPPEIELLSALEELDLSNNSIIELLSS---------------------L--SNLKNLSGLE 238 (394)
T ss_pred hhhhhhhheeccC-CccccCchhhhhhhhhhhhhhcCCcceecchh---------------------h--hhcccccccc
Confidence 2 7778888877 577777765 3455577777776532221110 0 1222344444
Q ss_pred eccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCc
Q 019416 212 IWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECE 264 (341)
Q Consensus 212 l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~ 264 (341)
+.+ ..+..++..+..++.+++|+++++ .+..++. ..+..+++++++++..
T Consensus 239 l~~-n~~~~~~~~~~~l~~l~~L~~s~n-~i~~i~~-~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 239 LSN-NKLEDLPESIGNLSNLETLDLSNN-QISSISS-LGSLTNLRELDLSGNS 288 (394)
T ss_pred cCC-ceeeeccchhccccccceeccccc-ccccccc-ccccCccCEEeccCcc
Confidence 333 333444566677777888888774 3444444 3334578888887743
No 38
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.69 E-value=1e-06 Score=82.17 Aligned_cols=166 Identities=20% Similarity=0.300 Sum_probs=124.7
Q ss_pred CCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh---hcccCCCCcceEeeecCCCCccccCCCCCCCccEE
Q 019416 39 GETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL---LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLKRL 115 (341)
Q Consensus 39 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~---~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L 115 (341)
+..-...+++. +++..+|..+..|..|+.+.++. +.++.+ +.. +..|.+++++.+ .+..+|...+.--|+.|
T Consensus 74 ltdt~~aDlsr-NR~~elp~~~~~f~~Le~liLy~-n~~r~ip~~i~~--L~~lt~l~ls~N-qlS~lp~~lC~lpLkvl 148 (722)
T KOG0532|consen 74 LTDTVFADLSR-NRFSELPEEACAFVSLESLILYH-NCIRTIPEAICN--LEALTFLDLSSN-QLSHLPDGLCDLPLKVL 148 (722)
T ss_pred ccchhhhhccc-cccccCchHHHHHHHHHHHHHHh-ccceecchhhhh--hhHHHHhhhccc-hhhcCChhhhcCcceeE
Confidence 33445667776 36677787788888888888887 445554 778 888999999874 77778765443449999
Q ss_pred EEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCCC-CCccccceEEeeccCCccccCcceeeeCCCCCCcCCC
Q 019416 116 KICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPIN-QLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVGPEG 192 (341)
Q Consensus 116 ~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~~~~ 192 (341)
.++.+. ++. +|..++ ++|..|+.+. +.+..++.. +.+.+|+.|.+... ++.++|.++.
T Consensus 149 i~sNNk-l~~----lp~~ig~~~tl~~ld~s~-nei~slpsql~~l~slr~l~vrRn-~l~~lp~El~------------ 209 (722)
T KOG0532|consen 149 IVSNNK-LTS----LPEEIGLLPTLAHLDVSK-NEIQSLPSQLGYLTSLRDLNVRRN-HLEDLPEELC------------ 209 (722)
T ss_pred EEecCc-ccc----CCcccccchhHHHhhhhh-hhhhhchHHhhhHHHHHHHHHhhh-hhhhCCHHHh------------
Confidence 999875 666 888888 8899999877 577777765 66778888888874 4556665331
Q ss_pred cccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCC
Q 019416 193 ESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCP 240 (341)
Q Consensus 193 ~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 240 (341)
.+| |.+|+++. +++..+|-.|..+..|++|-+.+++
T Consensus 210 -----~Lp------Li~lDfSc-Nkis~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 210 -----SLP------LIRLDFSC-NKISYLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred -----CCc------eeeeeccc-CceeecchhhhhhhhheeeeeccCC
Confidence 166 88999884 7888999999999999999998864
No 39
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.58 E-value=5e-06 Score=79.48 Aligned_cols=36 Identities=22% Similarity=0.289 Sum_probs=15.4
Q ss_pred cCeEeecCCCCCccCCCC--CC-CCCccEEEeecCCCCC
Q 019416 279 LQDLSVSGCPSLMSFPHG--GL-PPNLISLGIIDCENLI 314 (341)
Q Consensus 279 L~~L~l~~c~~l~~~~~~--~~-~~~L~~L~l~~c~~~~ 314 (341)
++.|+++.|..+..-... .. ...++.+++.+|....
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~ 441 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVIT 441 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCccccc
Confidence 555555555443222111 00 2334555555555444
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.55 E-value=1.2e-05 Score=69.59 Aligned_cols=122 Identities=17% Similarity=0.215 Sum_probs=82.2
Q ss_pred CCCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh--hcccCCCCcceEeeecCCCCccccC-CCCCCCcc
Q 019416 37 RTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL--LHRMAYTSLEYLEFSSCLFFSNSKQ-DYFPTTLK 113 (341)
Q Consensus 37 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~ 113 (341)
..-+-|+.+|++++ .++.+..+..-+|.++.|+++. +.+..+ +.. +.+|+.||++++ .+..+.. ...+-+.+
T Consensus 281 dTWq~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~-N~i~~v~nLa~--L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 281 DTWQELTELDLSGN-LITQIDESVKLAPKLRRLILSQ-NRIRTVQNLAE--LPQLQLLDLSGN-LLAECVGWHLKLGNIK 355 (490)
T ss_pred chHhhhhhcccccc-chhhhhhhhhhccceeEEeccc-cceeeehhhhh--cccceEeecccc-hhHhhhhhHhhhcCEe
Confidence 34555788888874 5666666666678888888888 455444 777 888888888874 5554433 22367788
Q ss_pred EEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCCC---CCccccceEEeeccC
Q 019416 114 RLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPIN---QLPATLRHLRIVNCM 170 (341)
Q Consensus 114 ~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~---~~~~~L~~L~l~~~~ 170 (341)
+|.+.++. ++. + ++++ .+|..|++.+ +++..+... +.+|.|+.+.+.+++
T Consensus 356 tL~La~N~-iE~----L-SGL~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 356 TLKLAQNK-IET----L-SGLRKLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred eeehhhhh-Hhh----h-hhhHhhhhheeccccc-cchhhHHHhcccccccHHHHHhhcCCC
Confidence 88888864 343 2 2222 7888888887 566665543 567788888887754
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.53 E-value=0.00011 Score=48.99 Aligned_cols=54 Identities=17% Similarity=0.277 Sum_probs=38.9
Q ss_pred CCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccCCC--CCCCccEEEEeCCC
Q 019416 64 TTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQDY--FPTTLKRLKICDCT 121 (341)
Q Consensus 64 ~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~~~--~~~~L~~L~l~~~~ 121 (341)
++|++|++++| ++..+ +.. +++|++|+++++ .+..++... .+++|++|++++|.
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~--l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSN--LPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTT--GTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcC--CCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 57788888874 56555 777 888888888864 666666533 37888888888764
No 42
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.48 E-value=8.4e-06 Score=77.94 Aligned_cols=59 Identities=25% Similarity=0.381 Sum_probs=34.5
Q ss_pred eEeecCCCCCc-cCCCCC-CCCCccEEEeecCCCCCccccccccC-CCceeEEEEeCCCCCCC
Q 019416 281 DLSVSGCPSLM-SFPHGG-LPPNLISLGIIDCENLIPLSQWELHK-LKHLNKYTILGGLPVLE 340 (341)
Q Consensus 281 ~L~l~~c~~l~-~~~~~~-~~~~L~~L~l~~c~~~~~~~~~~i~~-~~~L~~l~l~~~C~~l~ 340 (341)
.+.+.+|+.+. .+..-. ....++.|.+..|..++....+.... +.+++.+.+.+ |+.+.
T Consensus 380 ~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~-~~~~~ 441 (482)
T KOG1947|consen 380 ELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSG-CRVIT 441 (482)
T ss_pred HHHhcCCcccchHHHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccC-ccccc
Confidence 35566676662 222111 12238999999998887332221222 67788888888 87654
No 43
>PLN03150 hypothetical protein; Provisional
Probab=97.41 E-value=0.00033 Score=69.25 Aligned_cols=98 Identities=17% Similarity=0.151 Sum_probs=58.3
Q ss_pred cCeEEcCCCCCCccccccccCCCCccEEeccCCCCch-hh---hcccCCCCcceEeeecCCCCccccC-CCCCCCccEEE
Q 019416 42 LESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLE-VL---LHRMAYTSLEYLEFSSCLFFSNSKQ-DYFPTTLKRLK 116 (341)
Q Consensus 42 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~-~~---~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~ 116 (341)
++.|+|+++.....+|..+..+++|+.|++++| .+. .+ ++. +++|+.|++++|.....+|. .+.+++|+.|+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N-~l~g~iP~~~~~--l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~ 496 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGN-SIRGNIPPSLGS--ITSLEVLDLSYNSFNGSIPESLGQLTSLRILN 496 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCC-cccCcCChHHhC--CCCCCEEECCCCCCCCCCchHHhcCCCCCEEE
Confidence 667777765443345666667777777777774 333 22 666 77777777777544445554 34467777777
Q ss_pred EeCCCChHHHHHHhhhhcc---cccceEeecCC
Q 019416 117 ICDCTNAELILKVLMDQKG---LALESLEVDGC 146 (341)
Q Consensus 117 l~~~~~~~~~~~~~~~~~~---~~L~~L~l~~~ 146 (341)
+++|..... +|..++ .++..+++.++
T Consensus 497 Ls~N~l~g~----iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 497 LNGNSLSGR----VPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred CcCCccccc----CChHHhhccccCceEEecCC
Confidence 777654434 555443 23445555543
No 44
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.39 E-value=0.00019 Score=67.00 Aligned_cols=171 Identities=21% Similarity=0.222 Sum_probs=117.3
Q ss_pred CCCCCcCeEEcCCCCCCccccccccCCC-CccEEeccCCCCchhh---hcccCCCCcceEeeecCCCCccccCCC-CCCC
Q 019416 37 RTGETLESLEIDNLSSLASFLRSELAAT-TVKQLKINKCPDLEVL---LHRMAYTSLEYLEFSSCLFFSNSKQDY-FPTT 111 (341)
Q Consensus 37 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~l~~~---~~~~~l~~L~~L~l~~~~~l~~~~~~~-~~~~ 111 (341)
...+.++.|++.+ ..++.+++....+. +|++|++++ +.+..+ ++. +++|+.|+++++ .+..++... ..++
T Consensus 113 ~~~~~l~~L~l~~-n~i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~~~~--l~~L~~L~l~~N-~l~~l~~~~~~~~~ 187 (394)
T COG4886 113 LELTNLTSLDLDN-NNITDIPPLIGLLKSNLKELDLSD-NKIESLPSPLRN--LPNLKNLDLSFN-DLSDLPKLLSNLSN 187 (394)
T ss_pred hcccceeEEecCC-cccccCccccccchhhcccccccc-cchhhhhhhhhc--cccccccccCCc-hhhhhhhhhhhhhh
Confidence 3457799999987 46677777666664 999999999 667665 888 999999999985 777777654 6899
Q ss_pred ccEEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCCCCCccccceEEeeccCCccccCcceeeeCCCCCCc
Q 019416 112 LKRLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVG 189 (341)
Q Consensus 112 L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~ 189 (341)
|+.|+++++. +.. +|.... .+|+++.+.+...+..........++..+.+.+.. +..++..
T Consensus 188 L~~L~ls~N~-i~~----l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~-~~~~~~~----------- 250 (394)
T COG4886 188 LNNLDLSGNK-ISD----LPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK-LEDLPES----------- 250 (394)
T ss_pred hhheeccCCc-ccc----CchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce-eeeccch-----------
Confidence 9999999986 566 777643 55999999874334333333444555555544321 2111110
Q ss_pred CCCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCC
Q 019416 190 PEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSL 242 (341)
Q Consensus 190 ~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l 242 (341)
+ ..++.++.|+++++ .+..++. ++.+.+++.|++++....
T Consensus 251 ---------~--~~l~~l~~L~~s~n-~i~~i~~-~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 251 ---------I--GNLSNLETLDLSNN-QISSISS-LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred ---------h--ccccccceeccccc-ccccccc-ccccCccCEEeccCcccc
Confidence 0 12234889999874 5566655 777889999999885443
No 45
>PLN03150 hypothetical protein; Provisional
Probab=97.36 E-value=0.00046 Score=68.28 Aligned_cols=108 Identities=22% Similarity=0.204 Sum_probs=75.8
Q ss_pred cceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccchhhhccCCCcCeEeecC
Q 019416 207 LRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQIHKATSLQDLSVSG 286 (341)
Q Consensus 207 L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~ 286 (341)
++.|++.++.--..+|..+..+++|+.|+++++.-...+|.....+++|+.|+++++.-...+|+.+..+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 67788887655456788888889999999988754445665444457999999998653346888888999999999988
Q ss_pred CCCCccCCCC--CCCCCccEEEeecCCCCC
Q 019416 287 CPSLMSFPHG--GLPPNLISLGIIDCENLI 314 (341)
Q Consensus 287 c~~l~~~~~~--~~~~~L~~L~l~~c~~~~ 314 (341)
+..-..+|.. ....++..+++.++..+.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCcccc
Confidence 6543455543 223455677777655443
No 46
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.35 E-value=1.6e-05 Score=74.37 Aligned_cols=186 Identities=24% Similarity=0.262 Sum_probs=102.8
Q ss_pred eEeeecCCCCccccC-CCCCCCccEEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCCCCCccccceEEee
Q 019416 91 YLEFSSCLFFSNSKQ-DYFPTTLKRLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPINQLPATLRHLRIV 167 (341)
Q Consensus 91 ~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~ 167 (341)
..+++.+ ....+|. +..+..|+.+.++.+. +.. +|..+. ..|++++++. +.+..+|.....--|+.|-++
T Consensus 79 ~aDlsrN-R~~elp~~~~~f~~Le~liLy~n~-~r~----ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC~lpLkvli~s 151 (722)
T KOG0532|consen 79 FADLSRN-RFSELPEEACAFVSLESLILYHNC-IRT----IPEAICNLEALTFLDLSS-NQLSHLPDGLCDLPLKVLIVS 151 (722)
T ss_pred hhhcccc-ccccCchHHHHHHHHHHHHHHhcc-cee----cchhhhhhhHHHHhhhcc-chhhcCChhhhcCcceeEEEe
Confidence 3444442 3444443 2224445555555443 333 444444 5566666655 455555554221235555555
Q ss_pred ccCCccccCcceeeeCCCCCCcCCCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecC
Q 019416 168 NCMNLKSLGESSKIRNCDSVVGPEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPE 247 (341)
Q Consensus 168 ~~~~l~~~~~~l~l~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~ 247 (341)
+ ++++.+|..+. ..+ .|..|+.+.| .+..+|..++++.+|+.|.+..+ .+.++|+
T Consensus 152 N-Nkl~~lp~~ig-----------------~~~-----tl~~ld~s~n-ei~slpsql~~l~slr~l~vrRn-~l~~lp~ 206 (722)
T KOG0532|consen 152 N-NKLTSLPEEIG-----------------LLP-----TLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRRN-HLEDLPE 206 (722)
T ss_pred c-CccccCCcccc-----------------cch-----hHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhhh-hhhhCCH
Confidence 4 33444443211 022 3666666653 45566666666777777766653 3555665
Q ss_pred CCCCCCCcceEecccCcccccchhhhccCCCcCeEeecCCCCCccCCCC----CCCCCccEEEeecCC
Q 019416 248 GGLPNTSLTSLLISECENLMSLPHQIHKATSLQDLSVSGCPSLMSFPHG----GLPPNLISLGIIDCE 311 (341)
Q Consensus 248 ~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~----~~~~~L~~L~l~~c~ 311 (341)
....+ .|..||++. +++..+|-.+..+..|++|.+. |+.+.+-|.. |...-.+.|+..-|.
T Consensus 207 El~~L-pLi~lDfSc-Nkis~iPv~fr~m~~Lq~l~Le-nNPLqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 207 ELCSL-PLIRLDFSC-NKISYLPVDFRKMRHLQVLQLE-NNPLQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred HHhCC-ceeeeeccc-Cceeecchhhhhhhhheeeeec-cCCCCCChHHHHhccceeeeeeecchhcc
Confidence 44332 577778775 5788888888888888888884 4566665543 334556777776663
No 47
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.34 E-value=9.2e-05 Score=73.37 Aligned_cols=125 Identities=16% Similarity=0.107 Sum_probs=76.2
Q ss_pred CCCcCeEEcCCCCCCcccccc--ccCCCCccEEeccCCCCchh-h---hcccCCCCcceEeeecCCCCccccCCCCCCCc
Q 019416 39 GETLESLEIDNLSSLASFLRS--ELAATTVKQLKINKCPDLEV-L---LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTL 112 (341)
Q Consensus 39 ~~~L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~l~~-~---~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L 112 (341)
-.+|++|++++...+..-|.. ...+|+|+.|.+++..-..+ + ..+ +++|..||++++ .+.++..++.+++|
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~s--FpNL~sLDIS~T-nI~nl~GIS~LknL 197 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCAS--FPNLRSLDISGT-NISNLSGISRLKNL 197 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhc--cCccceeecCCC-CccCcHHHhccccH
Confidence 456888888875444333322 23478888888887322222 2 678 888888888885 77777767778888
Q ss_pred cEEEEeCCCChHHHHHHhhhhcc-cccceEeecCCCCccc-------cCCCCCccccceEEeec
Q 019416 113 KRLKICDCTNAELILKVLMDQKG-LALESLEVDGCSSLFS-------LPINQLPATLRHLRIVN 168 (341)
Q Consensus 113 ~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~-------l~~~~~~~~L~~L~l~~ 168 (341)
+.|.+.+..-... ..+-+-+. .+|+.||++.-..... +..+..+|+|+.|+.++
T Consensus 198 q~L~mrnLe~e~~--~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 198 QVLSMRNLEFESY--QDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred HHHhccCCCCCch--hhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 8887776542110 00111122 7888888876333222 11224467888888875
No 48
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.31 E-value=8.6e-06 Score=71.82 Aligned_cols=15 Identities=13% Similarity=0.315 Sum_probs=8.1
Q ss_pred CCCCCcCeEEcCCCC
Q 019416 37 RTGETLESLEIDNLS 51 (341)
Q Consensus 37 ~~~~~L~~L~l~~~~ 51 (341)
..+..+++++++++.
T Consensus 27 ~~~~s~~~l~lsgnt 41 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNT 41 (382)
T ss_pred cccCceEEEeccCCc
Confidence 345555566666543
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.97 E-value=0.0012 Score=40.68 Aligned_cols=40 Identities=20% Similarity=0.375 Sum_probs=31.2
Q ss_pred CCcceEecccCcccccchhhhccCCCcCeEeecCCCCCccCC
Q 019416 253 TSLTSLLISECENLMSLPHQIHKATSLQDLSVSGCPSLMSFP 294 (341)
Q Consensus 253 ~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~ 294 (341)
++|++|+++++ +++.+|..+..+++|+.|+++++ .+++++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 47899999985 68899877899999999999885 566654
No 50
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.85 E-value=0.00034 Score=65.87 Aligned_cols=81 Identities=17% Similarity=0.159 Sum_probs=45.1
Q ss_pred CCCCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh--hcccCCCCcceEeeecCCCCccccCCCCCCCcc
Q 019416 36 IRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL--LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLK 113 (341)
Q Consensus 36 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~ 113 (341)
++.+.+|+.|++.++ .++.+......+++|++|++++ +.++.+ +.. ++.|+.|++.+| .+..+.....+++|+
T Consensus 91 l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~-N~I~~i~~l~~--l~~L~~L~l~~N-~i~~~~~~~~l~~L~ 165 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSF-NKITKLEGLST--LTLLKELNLSGN-LISDISGLESLKSLK 165 (414)
T ss_pred cccccceeeeecccc-chhhcccchhhhhcchheeccc-cccccccchhh--ccchhhheeccC-cchhccCCccchhhh
Confidence 445666666666653 3333332234456666666666 455555 555 666666666653 555555544456666
Q ss_pred EEEEeCCC
Q 019416 114 RLKICDCT 121 (341)
Q Consensus 114 ~L~l~~~~ 121 (341)
.++++++.
T Consensus 166 ~l~l~~n~ 173 (414)
T KOG0531|consen 166 LLDLSYNR 173 (414)
T ss_pred cccCCcch
Confidence 66666655
No 51
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.76 E-value=0.00025 Score=66.70 Aligned_cols=56 Identities=18% Similarity=0.191 Sum_probs=25.5
Q ss_pred CCCCccEEeccCCCCchhh---hcccCCCCcceEeeecCCCCccccCCCCCCCccEEEEeCCC
Q 019416 62 AATTVKQLKINKCPDLEVL---LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLKRLKICDCT 121 (341)
Q Consensus 62 ~l~~L~~L~l~~~~~l~~~---~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~ 121 (341)
.+.+|+.|++.+ ++++.+ +.. +++|++|++++ +.+..+.....++.|+.|++.+|.
T Consensus 93 ~~~~l~~l~l~~-n~i~~i~~~l~~--~~~L~~L~ls~-N~I~~i~~l~~l~~L~~L~l~~N~ 151 (414)
T KOG0531|consen 93 KLKSLEALDLYD-NKIEKIENLLSS--LVNLQVLDLSF-NKITKLEGLSTLTLLKELNLSGNL 151 (414)
T ss_pred cccceeeeeccc-cchhhcccchhh--hhcchheeccc-cccccccchhhccchhhheeccCc
Confidence 344555555544 333333 344 45555555544 244444444444445555555443
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.65 E-value=0.002 Score=39.65 Aligned_cols=34 Identities=15% Similarity=0.277 Sum_probs=23.3
Q ss_pred CCcCeEEcCCCCCCccccccccCCCCccEEeccCC
Q 019416 40 ETLESLEIDNLSSLASFLRSELAATTVKQLKINKC 74 (341)
Q Consensus 40 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 74 (341)
++|++|+++++ .++.+|..+..+++|+.|++++|
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSS
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCC
Confidence 46788888875 55666666777788888888774
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.41 E-value=6.5e-05 Score=72.47 Aligned_cols=99 Identities=20% Similarity=0.195 Sum_probs=61.8
Q ss_pred ccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCC-CCCCCcceEecccCcccccchhhhccCCCcCeEee
Q 019416 206 ELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGG-LPNTSLTSLLISECENLMSLPHQIHKATSLQDLSV 284 (341)
Q Consensus 206 ~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~-~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l 284 (341)
.++.|+++++ ++..+ ..+..++.|++||++++ .+..+|.-. .. -.|+.|.+.++ .++++. ++.++.+|+.|++
T Consensus 188 ale~LnLshN-k~~~v-~~Lr~l~~LkhLDlsyN-~L~~vp~l~~~g-c~L~~L~lrnN-~l~tL~-gie~LksL~~LDl 261 (1096)
T KOG1859|consen 188 ALESLNLSHN-KFTKV-DNLRRLPKLKHLDLSYN-CLRHVPQLSMVG-CKLQLLNLRNN-ALTTLR-GIENLKSLYGLDL 261 (1096)
T ss_pred Hhhhhccchh-hhhhh-HHHHhcccccccccccc-hhccccccchhh-hhheeeeeccc-HHHhhh-hHHhhhhhhccch
Confidence 4778888874 34444 25566788888888874 455555422 22 24888888873 566665 6777888888888
Q ss_pred cCCCCCccCCCC---CCCCCccEEEeecCC
Q 019416 285 SGCPSLMSFPHG---GLPPNLISLGIIDCE 311 (341)
Q Consensus 285 ~~c~~l~~~~~~---~~~~~L~~L~l~~c~ 311 (341)
++ +-+....+- ..+.+|.+|.+.|++
T Consensus 262 sy-Nll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 262 SY-NLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hH-hhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 76 344433322 224567777776654
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.32 E-value=0.0014 Score=65.17 Aligned_cols=106 Identities=19% Similarity=0.156 Sum_probs=59.5
Q ss_pred CCCCCcCeEEcCCCCCCcccccc-ccCCCCccEEeccCCCCchhh--hcccCCCCcceEeeecCCCCc--cccCCCCCCC
Q 019416 37 RTGETLESLEIDNLSSLASFLRS-ELAATTVKQLKINKCPDLEVL--LHRMAYTSLEYLEFSSCLFFS--NSKQDYFPTT 111 (341)
Q Consensus 37 ~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~--~~~~~l~~L~~L~l~~~~~l~--~~~~~~~~~~ 111 (341)
..+|.|+.|.+.+-.....-... ...||||..||+|+ +++..+ ++. +++|+.|.+++...-. .+-....+++
T Consensus 145 ~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~-TnI~nl~GIS~--LknLq~L~mrnLe~e~~~~l~~LF~L~~ 221 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISG-TNISNLSGISR--LKNLQVLSMRNLEFESYQDLIDLFNLKK 221 (699)
T ss_pred hhCcccceEEecCceecchhHHHHhhccCccceeecCC-CCccCcHHHhc--cccHHHHhccCCCCCchhhHHHHhcccC
Confidence 45888888888763322211111 23578888888888 566666 777 8888888776542221 1111223677
Q ss_pred ccEEEEeCCCChHHH--HHH-hhhhcc-cccceEeecC
Q 019416 112 LKRLKICDCTNAELI--LKV-LMDQKG-LALESLEVDG 145 (341)
Q Consensus 112 L~~L~l~~~~~~~~~--~~~-~~~~~~-~~L~~L~l~~ 145 (341)
|+.|++++....... ..+ +..... |+|+.|+.++
T Consensus 222 L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 222 LRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred CCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 888888775433321 000 111111 7777777776
No 55
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.23 E-value=0.00029 Score=68.12 Aligned_cols=191 Identities=18% Similarity=0.137 Sum_probs=96.6
Q ss_pred CCCCcCeEEcCCCCCCccc-cccccCCCCccEEeccCCCCc--hhhhcccCCCCcceEee-----------ecCCCCccc
Q 019416 38 TGETLESLEIDNLSSLASF-LRSELAATTVKQLKINKCPDL--EVLLHRMAYTSLEYLEF-----------SSCLFFSNS 103 (341)
Q Consensus 38 ~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l--~~~~~~~~l~~L~~L~l-----------~~~~~l~~~ 103 (341)
-+++++.|.+-.-+.-... |.++.+|..|++|.+++|+-- .++.+- -..|+.|.- ..| ..++
T Consensus 82 ~lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~GL~~l--r~qLe~LIC~~Sl~Al~~v~asc--ggd~ 157 (1096)
T KOG1859|consen 82 FLQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTAKGLQEL--RHQLEKLICHNSLDALRHVFASC--GGDI 157 (1096)
T ss_pred HHhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhhhhhHHH--HHhhhhhhhhccHHHHHHHHHHh--cccc
Confidence 3566666666544433333 666888999999999998521 122111 112222211 111 1111
Q ss_pred cCCCCCCCccEEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCCCCCccccceEEeeccCCccccCcceee
Q 019416 104 KQDYFPTTLKRLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLGESSKI 181 (341)
Q Consensus 104 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~l~l 181 (341)
.....-..|..-+.++|. +.. +...+. +.++.|+++. ++++.......++.|++|+++++ .++.+|.
T Consensus 158 ~ns~~Wn~L~~a~fsyN~-L~~----mD~SLqll~ale~LnLsh-Nk~~~v~~Lr~l~~LkhLDlsyN-~L~~vp~---- 226 (1096)
T KOG1859|consen 158 SNSPVWNKLATASFSYNR-LVL----MDESLQLLPALESLNLSH-NKFTKVDNLRRLPKLKHLDLSYN-CLRHVPQ---- 226 (1096)
T ss_pred ccchhhhhHhhhhcchhh-HHh----HHHHHHHHHHhhhhccch-hhhhhhHHHHhcccccccccccc-hhccccc----
Confidence 110001234444444443 333 444444 7788888877 56665554456678888888764 3554443
Q ss_pred eCCCCCCcCCCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCC--CCCCCcceEe
Q 019416 182 RNCDSVVGPEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGG--LPNTSLTSLL 259 (341)
Q Consensus 182 ~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~--~~~~~L~~L~ 259 (341)
+....| +|..|.+.++ .++.+ ..+.++.+|+.||++++- +....+-. .-+..|+.|+
T Consensus 227 -----------------l~~~gc-~L~~L~lrnN-~l~tL-~gie~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~ 285 (1096)
T KOG1859|consen 227 -----------------LSMVGC-KLQLLNLRNN-ALTTL-RGIENLKSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLW 285 (1096)
T ss_pred -----------------cchhhh-hheeeeeccc-HHHhh-hhHHhhhhhhccchhHhh-hhcchhhhHHHHHHHHHHHh
Confidence 111122 2777777763 34444 455667788888887742 22222100 0113566666
Q ss_pred cccCc
Q 019416 260 ISECE 264 (341)
Q Consensus 260 l~~~~ 264 (341)
+.+++
T Consensus 286 LeGNP 290 (1096)
T KOG1859|consen 286 LEGNP 290 (1096)
T ss_pred hcCCc
Confidence 66654
No 56
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.89 E-value=0.0013 Score=54.03 Aligned_cols=83 Identities=23% Similarity=0.399 Sum_probs=56.2
Q ss_pred CCcceEecccCcccccc-hhhhccCCCcCeEeecCCCCCccCCCC---CCCCCccEEEeecCCCCCcc-ccccccCCCce
Q 019416 253 TSLTSLLISECENLMSL-PHQIHKATSLQDLSVSGCPSLMSFPHG---GLPPNLISLGIIDCENLIPL-SQWELHKLKHL 327 (341)
Q Consensus 253 ~~L~~L~l~~~~~l~~l-~~~l~~l~~L~~L~l~~c~~l~~~~~~---~~~~~L~~L~l~~c~~~~~~-~~~~i~~~~~L 327 (341)
..++.++-+++. +... -+.+..+++++.|.+.+|..+.+..-+ +..++|+.|++++|+++++. -.| +.++++|
T Consensus 101 ~~IeaVDAsds~-I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~-L~~lknL 178 (221)
T KOG3864|consen 101 VKIEAVDASDSS-IMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLAC-LLKLKNL 178 (221)
T ss_pred ceEEEEecCCch-HHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHH-HHHhhhh
Confidence 355666666643 3322 235677788888888888877654322 35688999999999999843 333 7788888
Q ss_pred eEEEEeCCCCC
Q 019416 328 NKYTILGGLPV 338 (341)
Q Consensus 328 ~~l~l~~~C~~ 338 (341)
+.|.+.+ =|.
T Consensus 179 r~L~l~~-l~~ 188 (221)
T KOG3864|consen 179 RRLHLYD-LPY 188 (221)
T ss_pred HHHHhcC-chh
Confidence 8888776 443
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.25 E-value=0.013 Score=51.27 Aligned_cols=79 Identities=19% Similarity=0.063 Sum_probs=51.9
Q ss_pred CCCcCeEEcCCCCCCccccc--cc-cCCCCccEEeccCCCCchhh------hcccCCCCcceEeeecCCCCccccCCC-C
Q 019416 39 GETLESLEIDNLSSLASFLR--SE-LAATTVKQLKINKCPDLEVL------LHRMAYTSLEYLEFSSCLFFSNSKQDY-F 108 (341)
Q Consensus 39 ~~~L~~L~l~~~~~~~~~~~--~~-~~l~~L~~L~l~~~~~l~~~------~~~~~l~~L~~L~l~~~~~l~~~~~~~-~ 108 (341)
..-++.|.+.+|.. ..... .+ ..+..++++++.+ +.+.++ ++. ++.|+.|+++.+..-..+.... -
T Consensus 44 ~ra~ellvln~~~i-d~~gd~~~~~~~~~~v~elDL~~-N~iSdWseI~~ile~--lP~l~~LNls~N~L~s~I~~lp~p 119 (418)
T KOG2982|consen 44 LRALELLVLNGSII-DNEGDVMLFGSSVTDVKELDLTG-NLISDWSEIGAILEQ--LPALTTLNLSCNSLSSDIKSLPLP 119 (418)
T ss_pred ccchhhheecCCCC-CcchhHHHHHHHhhhhhhhhccc-chhccHHHHHHHHhc--CccceEeeccCCcCCCccccCccc
Confidence 33455677776532 22211 12 2368999999998 566554 788 9999999998765444454432 3
Q ss_pred CCCccEEEEeCCC
Q 019416 109 PTTLKRLKICDCT 121 (341)
Q Consensus 109 ~~~L~~L~l~~~~ 121 (341)
..+|+.|.+.|..
T Consensus 120 ~~nl~~lVLNgT~ 132 (418)
T KOG2982|consen 120 LKNLRVLVLNGTG 132 (418)
T ss_pred ccceEEEEEcCCC
Confidence 5789999998854
No 58
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=94.94 E-value=0.012 Score=52.44 Aligned_cols=12 Identities=25% Similarity=0.365 Sum_probs=6.6
Q ss_pred CCCcceEeeecC
Q 019416 86 YTSLEYLEFSSC 97 (341)
Q Consensus 86 l~~L~~L~l~~~ 97 (341)
++.|+.|++.++
T Consensus 212 ~~~LevLdl~DN 223 (382)
T KOG1909|consen 212 CPHLEVLDLRDN 223 (382)
T ss_pred CCcceeeecccc
Confidence 555555555553
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.74 E-value=0.073 Score=44.06 Aligned_cols=98 Identities=15% Similarity=0.195 Sum_probs=53.7
Q ss_pred cceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCC-CCCCcceEecccCcccccchh--hhccCCCcCeEe
Q 019416 207 LRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGL-PNTSLTSLLISECENLMSLPH--QIHKATSLQDLS 283 (341)
Q Consensus 207 L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~-~~~~L~~L~l~~~~~l~~l~~--~l~~l~~L~~L~ 283 (341)
...++++++. +..+ ..|..++.|.+|.++++ .+..+.+... .+++|+.|.+.++ .+..+.+ .+..+|+|++|.
T Consensus 44 ~d~iDLtdNd-l~~l-~~lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 44 FDAIDLTDND-LRKL-DNLPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cceecccccc-hhhc-ccCCCccccceEEecCC-cceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceee
Confidence 4555666532 2222 34455677777777763 4555544222 1257777777774 4655533 456677777777
Q ss_pred ecCCCCCccCCCC-----CCCCCccEEEeec
Q 019416 284 VSGCPSLMSFPHG-----GLPPNLISLGIID 309 (341)
Q Consensus 284 l~~c~~l~~~~~~-----~~~~~L~~L~l~~ 309 (341)
+-++ .++....- .-.|+|++||+..
T Consensus 120 ll~N-pv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGN-PVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCC-chhcccCceeEEEEecCcceEeehhh
Confidence 7663 34433322 1146666666643
No 60
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.60 E-value=0.02 Score=49.11 Aligned_cols=102 Identities=18% Similarity=0.145 Sum_probs=58.0
Q ss_pred CCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCC-c-hhh---hcccCCCCcceEeeecCCCCc---cccCCCCC
Q 019416 38 TGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPD-L-EVL---LHRMAYTSLEYLEFSSCLFFS---NSKQDYFP 109 (341)
Q Consensus 38 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-l-~~~---~~~~~l~~L~~L~l~~~~~l~---~~~~~~~~ 109 (341)
.+..|+.|++.++ +++.+ ..+-.+++|+.|.++.++. + .++ ... +++|++++++++ .+. .+.....+
T Consensus 41 ~~~~le~ls~~n~-gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~--~P~l~~l~ls~N-ki~~lstl~pl~~l 115 (260)
T KOG2739|consen 41 EFVELELLSVINV-GLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEK--APNLKVLNLSGN-KIKDLSTLRPLKEL 115 (260)
T ss_pred cccchhhhhhhcc-ceeec-ccCCCcchhhhhcccCCcccccccceehhhh--CCceeEEeecCC-ccccccccchhhhh
Confidence 4666777777654 33322 1133467888888887421 1 122 666 788888888875 444 33333446
Q ss_pred CCccEEEEeCCCChHHHHHHhhhhcc---cccceEeecCC
Q 019416 110 TTLKRLKICDCTNAELILKVLMDQKG---LALESLEVDGC 146 (341)
Q Consensus 110 ~~L~~L~l~~~~~~~~~~~~~~~~~~---~~L~~L~l~~~ 146 (341)
.+|..|++..|...... -.-+.++ ++|++|+-.++
T Consensus 116 ~nL~~Ldl~n~~~~~l~--dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 116 ENLKSLDLFNCSVTNLD--DYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred cchhhhhcccCCccccc--cHHHHHHHHhhhhcccccccc
Confidence 77888888877633210 0112222 78888876553
No 61
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.53 E-value=0.0031 Score=54.54 Aligned_cols=79 Identities=23% Similarity=0.175 Sum_probs=58.7
Q ss_pred CCCCCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh-----hcccCCCCcceEeeecCCCCccccC----
Q 019416 35 GIRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL-----LHRMAYTSLEYLEFSSCLFFSNSKQ---- 105 (341)
Q Consensus 35 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-----~~~~~l~~L~~L~l~~~~~l~~~~~---- 105 (341)
....|+.||+|.|+= ++++.+.+ +..|++|++|.|+. +.+.++ +.+ +++|+.|++..++-....+.
T Consensus 36 ic~kMp~lEVLsLSv-NkIssL~p-l~rCtrLkElYLRk-N~I~sldEL~YLkn--lpsLr~LWL~ENPCc~~ag~nYR~ 110 (388)
T KOG2123|consen 36 ICEKMPLLEVLSLSV-NKISSLAP-LQRCTRLKELYLRK-NCIESLDELEYLKN--LPSLRTLWLDENPCCGEAGQNYRR 110 (388)
T ss_pred HHHhcccceeEEeec-cccccchh-HHHHHHHHHHHHHh-cccccHHHHHHHhc--CchhhhHhhccCCcccccchhHHH
Confidence 345799999999995 46665533 67789999999998 566655 888 99999999988766555543
Q ss_pred --CCCCCCccEEEEe
Q 019416 106 --DYFPTTLKRLKIC 118 (341)
Q Consensus 106 --~~~~~~L~~L~l~ 118 (341)
...+|+|++|+-.
T Consensus 111 ~VLR~LPnLkKLDnv 125 (388)
T KOG2123|consen 111 KVLRVLPNLKKLDNV 125 (388)
T ss_pred HHHHHcccchhccCc
Confidence 1237999998643
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.38 E-value=0.081 Score=43.81 Aligned_cols=35 Identities=11% Similarity=0.007 Sum_probs=15.4
Q ss_pred CCCcceEeeecCCCCccccC---CCCCCCccEEEEeCCC
Q 019416 86 YTSLEYLEFSSCLFFSNSKQ---DYFPTTLKRLKICDCT 121 (341)
Q Consensus 86 l~~L~~L~l~~~~~l~~~~~---~~~~~~L~~L~l~~~~ 121 (341)
+++|+.|.+.++ .++.+.. ...+|.|++|.+-+++
T Consensus 87 ~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 87 LPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTLLGNP 124 (233)
T ss_pred ccccceEEecCc-chhhhhhcchhccCCccceeeecCCc
Confidence 444555555442 3333322 2224455555555544
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.34 E-value=0.047 Score=46.82 Aligned_cols=79 Identities=20% Similarity=0.210 Sum_probs=36.8
Q ss_pred CCCcceEeeecCCCCccccCCCCCCCccEEEEeCC--CChHHHHHHhhhhcc--cccceEeecCCCCcccc---CCCCCc
Q 019416 86 YTSLEYLEFSSCLFFSNSKQDYFPTTLKRLKICDC--TNAELILKVLMDQKG--LALESLEVDGCSSLFSL---PINQLP 158 (341)
Q Consensus 86 l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l---~~~~~~ 158 (341)
+..|+.+++.++ .+..+.....+++|++|.++++ ..... ++.... |+|+++++++ +.++.+ .....+
T Consensus 42 ~~~le~ls~~n~-gltt~~~~P~Lp~LkkL~lsdn~~~~~~~----l~vl~e~~P~l~~l~ls~-Nki~~lstl~pl~~l 115 (260)
T KOG2739|consen 42 FVELELLSVINV-GLTTLTNFPKLPKLKKLELSDNYRRVSGG----LEVLAEKAPNLKVLNLSG-NKIKDLSTLRPLKEL 115 (260)
T ss_pred ccchhhhhhhcc-ceeecccCCCcchhhhhcccCCccccccc----ceehhhhCCceeEEeecC-Cccccccccchhhhh
Confidence 455555555443 3333333344556666666665 21111 111111 6666666665 344322 222334
Q ss_pred cccceEEeeccC
Q 019416 159 ATLRHLRIVNCM 170 (341)
Q Consensus 159 ~~L~~L~l~~~~ 170 (341)
.+|.+|++..|+
T Consensus 116 ~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 116 ENLKSLDLFNCS 127 (260)
T ss_pred cchhhhhcccCC
Confidence 556666666553
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.25 E-value=0.0027 Score=54.89 Aligned_cols=81 Identities=15% Similarity=0.112 Sum_probs=58.7
Q ss_pred CCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh--hcccCCCCcceEeeecCCCCccccCCCC---CCCc
Q 019416 38 TGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL--LHRMAYTSLEYLEFSSCLFFSNSKQDYF---PTTL 112 (341)
Q Consensus 38 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~l~~L~~L~l~~~~~l~~~~~~~~---~~~L 112 (341)
.+.+.++|+..+| ++..+.. ...++.|++|.|+= +++..+ +.. |++|++|+++.+ .+..+..+.+ +|+|
T Consensus 17 dl~~vkKLNcwg~-~L~DIsi-c~kMp~lEVLsLSv-NkIssL~pl~r--CtrLkElYLRkN-~I~sldEL~YLknlpsL 90 (388)
T KOG2123|consen 17 DLENVKKLNCWGC-GLDDISI-CEKMPLLEVLSLSV-NKISSLAPLQR--CTRLKELYLRKN-CIESLDELEYLKNLPSL 90 (388)
T ss_pred HHHHhhhhcccCC-CccHHHH-HHhcccceeEEeec-cccccchhHHH--HHHHHHHHHHhc-ccccHHHHHHHhcCchh
Confidence 3667788888887 3443321 34579999999986 778877 888 999999999874 5666655444 6888
Q ss_pred cEEEEeCCCChH
Q 019416 113 KRLKICDCTNAE 124 (341)
Q Consensus 113 ~~L~l~~~~~~~ 124 (341)
+.|-+..|+...
T Consensus 91 r~LWL~ENPCc~ 102 (388)
T KOG2123|consen 91 RTLWLDENPCCG 102 (388)
T ss_pred hhHhhccCCccc
Confidence 888887776443
No 65
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.15 E-value=0.021 Score=47.20 Aligned_cols=57 Identities=23% Similarity=0.367 Sum_probs=26.5
Q ss_pred CCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccCC--CCCCCccEEEEeCC
Q 019416 63 ATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQD--YFPTTLKRLKICDC 120 (341)
Q Consensus 63 l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~ 120 (341)
++.++.|.+.+|..+.+. ++. ..++|+.|++++|+.+++-... ..+++|+.|.+++.
T Consensus 124 l~~i~~l~l~~ck~~dD~~L~~l~~-~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 124 LRSIKSLSLANCKYFDDWCLERLGG-LAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDL 186 (221)
T ss_pred cchhhhheeccccchhhHHHHHhcc-cccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCc
Confidence 444455555555554444 211 2455555555555555444321 12455555555443
No 66
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.13 E-value=0.085 Score=46.35 Aligned_cols=83 Identities=19% Similarity=0.203 Sum_probs=53.4
Q ss_pred cCCCCCCCcCeEEcCCCCCCccccccc-cCCCCccEEeccCCCCc--hh---hhcccCCCCcceEeeecCCCCcccc---
Q 019416 34 LGIRTGETLESLEIDNLSSLASFLRSE-LAATTVKQLKINKCPDL--EV---LLHRMAYTSLEYLEFSSCLFFSNSK--- 104 (341)
Q Consensus 34 ~~l~~~~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~l--~~---~~~~~~l~~L~~L~l~~~~~l~~~~--- 104 (341)
..+.++|.|++|+++.++ +....... .+..+|++|.+.| +.+ .. .+.. ++.+++++++++ .++.+.
T Consensus 91 ~ile~lP~l~~LNls~N~-L~s~I~~lp~p~~nl~~lVLNg-T~L~w~~~~s~l~~--lP~vtelHmS~N-~~rq~n~Dd 165 (418)
T KOG2982|consen 91 AILEQLPALTTLNLSCNS-LSSDIKSLPLPLKNLRVLVLNG-TGLSWTQSTSSLDD--LPKVTELHMSDN-SLRQLNLDD 165 (418)
T ss_pred HHHhcCccceEeeccCCc-CCCccccCcccccceEEEEEcC-CCCChhhhhhhhhc--chhhhhhhhccc-hhhhhcccc
Confidence 345689999999999653 33322222 4678999999987 433 22 2788 889999998885 333221
Q ss_pred --CCCCCCCccEEEEeCCC
Q 019416 105 --QDYFPTTLKRLKICDCT 121 (341)
Q Consensus 105 --~~~~~~~L~~L~l~~~~ 121 (341)
.....+.+++|...+|.
T Consensus 166 ~c~e~~s~~v~tlh~~~c~ 184 (418)
T KOG2982|consen 166 NCIEDWSTEVLTLHQLPCL 184 (418)
T ss_pred ccccccchhhhhhhcCCcH
Confidence 12234567777777765
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.01 E-value=0.1 Score=26.61 Aligned_cols=19 Identities=37% Similarity=0.459 Sum_probs=10.7
Q ss_pred CcceEecccCcccccchhhh
Q 019416 254 SLTSLLISECENLMSLPHQI 273 (341)
Q Consensus 254 ~L~~L~l~~~~~l~~l~~~l 273 (341)
+|++|++++| .++.+|..+
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~ 19 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSF 19 (22)
T ss_dssp TESEEEETSS-EESEEGTTT
T ss_pred CccEEECCCC-cCEeCChhh
Confidence 3566666665 455665443
No 68
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.86 E-value=0.26 Score=23.35 Aligned_cols=16 Identities=31% Similarity=0.528 Sum_probs=7.9
Q ss_pred CCcCeEEcCCCCCCccc
Q 019416 40 ETLESLEIDNLSSLASF 56 (341)
Q Consensus 40 ~~L~~L~l~~~~~~~~~ 56 (341)
++|++|+|++|. ++.+
T Consensus 1 ~~L~~L~l~~n~-L~~l 16 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSL 16 (17)
T ss_dssp TT-SEEEETSS---SSE
T ss_pred CccCEEECCCCC-CCCC
Confidence 456777777664 4443
No 69
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=89.58 E-value=0.033 Score=43.29 Aligned_cols=87 Identities=20% Similarity=0.232 Sum_probs=53.2
Q ss_pred ccceEeeccCcCCCcccccC-CCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccchhhhccCCCcCeEee
Q 019416 206 ELRELEIWDCLELEFLPEDM-HNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQIHKATSLQDLSV 284 (341)
Q Consensus 206 ~L~~L~l~~~~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l 284 (341)
+|++.++++ +.++..|+.| ..++.+++|++.+ +.+..+|+....|+.|+.|.++.++ +...|+.+..+.++-.|+.
T Consensus 54 el~~i~ls~-N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 54 ELTKISLSD-NGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIKLDMLDS 130 (177)
T ss_pred eEEEEeccc-chhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHhHHHhcC
Confidence 366667776 3455555544 3455777777777 3566677665556777777777643 5555655555666666666
Q ss_pred cCCCCCccCCCC
Q 019416 285 SGCPSLMSFPHG 296 (341)
Q Consensus 285 ~~c~~l~~~~~~ 296 (341)
.+ +.+..++..
T Consensus 131 ~~-na~~eid~d 141 (177)
T KOG4579|consen 131 PE-NARAEIDVD 141 (177)
T ss_pred CC-CccccCcHH
Confidence 54 345555544
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=86.93 E-value=4.7 Score=30.51 Aligned_cols=98 Identities=18% Similarity=0.317 Sum_probs=46.9
Q ss_pred cccccceEeeccCcCCCccc-ccCCCCCCcCeEEeecCCCCceecCCCCC-CCCcceEecccCcccccchh-hhccCCCc
Q 019416 203 HTLELRELEIWDCLELEFLP-EDMHNFTDLNLLSISNCPSLESFPEGGLP-NTSLTSLLISECENLMSLPH-QIHKATSL 279 (341)
Q Consensus 203 ~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~~~~~~~~-~~~L~~L~l~~~~~l~~l~~-~l~~l~~L 279 (341)
.+++|+.+.+.. .+..++ ..|..+++|+.+.+.. .+..++...+. +++++.+.+.+ .+..++. .+..++.|
T Consensus 10 ~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 10 NCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPN--NLTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp T-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TTE
T ss_pred CCCCCCEEEECC--CeeEeChhhcccccccccccccc--cccccceeeeecccccccccccc--cccccccccccccccc
Confidence 344677777763 344553 3466677888888765 36666554433 23678887764 3555543 45667788
Q ss_pred CeEeecCCCCCccCCCCCCC-CCccEEEee
Q 019416 280 QDLSVSGCPSLMSFPHGGLP-PNLISLGII 308 (341)
Q Consensus 280 ~~L~l~~c~~l~~~~~~~~~-~~L~~L~l~ 308 (341)
+.+.+.. .+..++...+. ..|+.+.+.
T Consensus 84 ~~i~~~~--~~~~i~~~~f~~~~l~~i~~~ 111 (129)
T PF13306_consen 84 KNIDIPS--NITEIGSSSFSNCNLKEINIP 111 (129)
T ss_dssp CEEEETT--T-BEEHTTTTTT-T--EEE-T
T ss_pred cccccCc--cccEEchhhhcCCCceEEEEC
Confidence 8888753 35555554332 255555553
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=86.80 E-value=4.5 Score=30.59 Aligned_cols=78 Identities=23% Similarity=0.362 Sum_probs=30.8
Q ss_pred CCCCCCcCeEEeecCCCCceecCCCCC-CCCcceEecccCcccccchh-hhccCCCcCeEeecCCCCCccCCCCCC--CC
Q 019416 225 MHNFTDLNLLSISNCPSLESFPEGGLP-NTSLTSLLISECENLMSLPH-QIHKATSLQDLSVSGCPSLMSFPHGGL--PP 300 (341)
Q Consensus 225 ~~~l~~L~~L~l~~c~~l~~~~~~~~~-~~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~~~~~~~--~~ 300 (341)
|..+..|+.+.+.+ .++.+....+. +++|+.+.+.+ .++.++. .+..+++++.+.+.+ .+..++...+ .+
T Consensus 8 F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 8 FYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPN--NLTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-T
T ss_pred HhCCCCCCEEEECC--CeeEeChhhcccccccccccccc--cccccceeeeecccccccccccc--cccccccccccccc
Confidence 34445556555543 34444443332 23566666554 2444443 345555566666643 3444444322 35
Q ss_pred CccEEEee
Q 019416 301 NLISLGII 308 (341)
Q Consensus 301 ~L~~L~l~ 308 (341)
+|+.+.+.
T Consensus 82 ~l~~i~~~ 89 (129)
T PF13306_consen 82 NLKNIDIP 89 (129)
T ss_dssp TECEEEET
T ss_pred cccccccC
Confidence 55555553
No 72
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=86.16 E-value=0.038 Score=42.91 Aligned_cols=86 Identities=19% Similarity=0.312 Sum_probs=58.8
Q ss_pred cceEeeccCcCC--CcccccCCCCCCcCeEEeecCCCCceecCC-CCCCCCcceEecccCcccccchhhhccCCCcCeEe
Q 019416 207 LRELEIWDCLEL--EFLPEDMHNFTDLNLLSISNCPSLESFPEG-GLPNTSLTSLLISECENLMSLPHQIHKATSLQDLS 283 (341)
Q Consensus 207 L~~L~l~~~~~l--~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~ 283 (341)
+..++++.|.-. ...+..+.....|+..+++++ .+..+|+. ...++-++.+.+++ +.+..+|+.+..++.|+.|+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccc-hhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhcc
Confidence 566777777422 122233334457788899884 57777762 23346889999998 57999999999999999999
Q ss_pred ecCCCCCccCCC
Q 019416 284 VSGCPSLMSFPH 295 (341)
Q Consensus 284 l~~c~~l~~~~~ 295 (341)
++.++ +...+.
T Consensus 107 l~~N~-l~~~p~ 117 (177)
T KOG4579|consen 107 LRFNP-LNAEPR 117 (177)
T ss_pred cccCc-cccchH
Confidence 98854 433433
No 73
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=82.89 E-value=0.59 Score=24.79 Aligned_cols=15 Identities=13% Similarity=0.279 Sum_probs=10.3
Q ss_pred CceeEEEEeCCCCCCC
Q 019416 325 KHLNKYTILGGLPVLE 340 (341)
Q Consensus 325 ~~L~~l~l~~~C~~l~ 340 (341)
++|++|++++ |++++
T Consensus 2 ~~L~~L~l~~-C~~it 16 (26)
T smart00367 2 PNLRELDLSG-CTNIT 16 (26)
T ss_pred CCCCEeCCCC-CCCcC
Confidence 5677777777 77664
No 74
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=77.48 E-value=3.6 Score=36.06 Aligned_cols=130 Identities=17% Similarity=0.109 Sum_probs=70.2
Q ss_pred CCCCCCCcCeEEcCCCCCCcccccc----ccCCCCccEEeccCCCCchhh-----------------hcccCCCCcceEe
Q 019416 35 GIRTGETLESLEIDNLSSLASFLRS----ELAATTVKQLKINKCPDLEVL-----------------LHRMAYTSLEYLE 93 (341)
Q Consensus 35 ~l~~~~~L~~L~l~~~~~~~~~~~~----~~~l~~L~~L~l~~~~~l~~~-----------------~~~~~l~~L~~L~ 93 (341)
.+-.||+|++.++++|..-...|.. +..-++|+.|.+++|. +.-+ ... -+.|+++.
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~--kp~Le~vi 163 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAAD--KPKLEVVI 163 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhcc--CCCceEEE
Confidence 3557899999999987554444332 4456888888888753 2211 334 56788877
Q ss_pred eecCCCCccccC------CCCCCCccEEEEeCCCChHH-HHHHhhhhcc--cccceEeecCCCCccccCC------CCCc
Q 019416 94 FSSCLFFSNSKQ------DYFPTTLKRLKICDCTNAEL-ILKVLMDQKG--LALESLEVDGCSSLFSLPI------NQLP 158 (341)
Q Consensus 94 l~~~~~l~~~~~------~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~------~~~~ 158 (341)
...+ .+.+.+. ..+-..|+.+.+..+..-.. +.-.+..+.. ++|+.|++.++ .++.... ...+
T Consensus 164 cgrN-Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDN-tft~~gS~~La~al~~W 241 (388)
T COG5238 164 CGRN-RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDN-TFTLEGSRYLADALCEW 241 (388)
T ss_pred eccc-hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeecccc-chhhhhHHHHHHHhccc
Confidence 7664 3333332 11135777787777652110 0000111111 78888888763 3322111 0233
Q ss_pred cccceEEeecc
Q 019416 159 ATLRHLRIVNC 169 (341)
Q Consensus 159 ~~L~~L~l~~~ 169 (341)
+.|+.|.+..|
T Consensus 242 ~~lrEL~lnDC 252 (388)
T COG5238 242 NLLRELRLNDC 252 (388)
T ss_pred chhhhccccch
Confidence 45666666665
No 75
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=62.99 E-value=5.4 Score=20.82 Aligned_cols=16 Identities=38% Similarity=0.661 Sum_probs=6.6
Q ss_pred CcCeEeecCCCCCccCC
Q 019416 278 SLQDLSVSGCPSLMSFP 294 (341)
Q Consensus 278 ~L~~L~l~~c~~l~~~~ 294 (341)
+|+.|++.+ +.++.+|
T Consensus 3 ~L~~L~L~~-N~l~~lp 18 (26)
T smart00369 3 NLRELDLSN-NQLSSLP 18 (26)
T ss_pred CCCEEECCC-CcCCcCC
Confidence 344444433 2344443
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=62.99 E-value=5.4 Score=20.82 Aligned_cols=16 Identities=38% Similarity=0.661 Sum_probs=6.6
Q ss_pred CcCeEeecCCCCCccCC
Q 019416 278 SLQDLSVSGCPSLMSFP 294 (341)
Q Consensus 278 ~L~~L~l~~c~~l~~~~ 294 (341)
+|+.|++.+ +.++.+|
T Consensus 3 ~L~~L~L~~-N~l~~lp 18 (26)
T smart00370 3 NLRELDLSN-NQLSSLP 18 (26)
T ss_pred CCCEEECCC-CcCCcCC
Confidence 344444433 2344443
No 77
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=56.19 E-value=24 Score=21.24 Aligned_cols=32 Identities=28% Similarity=0.280 Sum_probs=16.0
Q ss_pred CCcCeEeecCCCCCccCCCCCCCCCccEEEeec
Q 019416 277 TSLQDLSVSGCPSLMSFPHGGLPPNLISLGIID 309 (341)
Q Consensus 277 ~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~ 309 (341)
++++.|.+.+. .-..+..+.+|++|++|.+++
T Consensus 12 ~~l~~L~~g~~-fn~~i~~~~lP~sl~~L~fg~ 43 (44)
T PF05725_consen 12 SSLKSLIFGSS-FNQPIEPGSLPNSLKSLSFGY 43 (44)
T ss_pred CCCeEEEECCc-cCccCCCCccCCCceEEEeeC
Confidence 35566666322 122343445566666666643
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=55.07 E-value=9.5 Score=19.42 Aligned_cols=11 Identities=36% Similarity=0.603 Sum_probs=4.6
Q ss_pred CCcCeEEcCCC
Q 019416 40 ETLESLEIDNL 50 (341)
Q Consensus 40 ~~L~~L~l~~~ 50 (341)
++|++|+|++|
T Consensus 2 ~~L~~L~l~~n 12 (24)
T PF13516_consen 2 PNLETLDLSNN 12 (24)
T ss_dssp TT-SEEE-TSS
T ss_pred CCCCEEEccCC
Confidence 44555555554
No 79
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=40.56 E-value=21 Score=31.51 Aligned_cols=84 Identities=13% Similarity=0.110 Sum_probs=49.7
Q ss_pred CCCCCCcCeEEcCCCCCCcccccc----ccCCCCccEEeccCCC--Cchh--------h---hcccCCCCcceEeeecCC
Q 019416 36 IRTGETLESLEIDNLSSLASFLRS----ELAATTVKQLKINKCP--DLEV--------L---LHRMAYTSLEYLEFSSCL 98 (341)
Q Consensus 36 l~~~~~L~~L~l~~~~~~~~~~~~----~~~l~~L~~L~l~~~~--~l~~--------~---~~~~~l~~L~~L~l~~~~ 98 (341)
+..+..+..+++++|..-+.-..+ +..-.+|++.++++-- ...+ + +-+ |+.|+..+++++.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlk--cp~l~~v~LSDNA 103 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLK--CPRLQKVDLSDNA 103 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhc--CCcceeeeccccc
Confidence 445777888888887544432222 2234677777776510 1111 1 556 7888888888864
Q ss_pred CCccccC-----CCCCCCccEEEEeCCC
Q 019416 99 FFSNSKQ-----DYFPTTLKRLKICDCT 121 (341)
Q Consensus 99 ~l~~~~~-----~~~~~~L~~L~l~~~~ 121 (341)
.-...+. +.....|++|.+++|.
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecCC
Confidence 4444433 2235778888888775
No 80
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=36.63 E-value=21 Score=19.03 Aligned_cols=17 Identities=47% Similarity=0.593 Sum_probs=9.9
Q ss_pred CcceEecccCcccccchh
Q 019416 254 SLTSLLISECENLMSLPH 271 (341)
Q Consensus 254 ~L~~L~l~~~~~l~~l~~ 271 (341)
+|+.|.++++ +++++|+
T Consensus 3 ~L~~L~vs~N-~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNN-QLTSLPE 19 (26)
T ss_pred ccceeecCCC-ccccCcc
Confidence 5666666653 4666653
No 81
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=28.66 E-value=45 Score=17.79 Aligned_cols=11 Identities=27% Similarity=0.498 Sum_probs=6.8
Q ss_pred CCcCeEEcCCC
Q 019416 40 ETLESLEIDNL 50 (341)
Q Consensus 40 ~~L~~L~l~~~ 50 (341)
++|++|+|++|
T Consensus 2 ~~L~~LdL~~N 12 (28)
T smart00368 2 PSLRELDLSNN 12 (28)
T ss_pred CccCEEECCCC
Confidence 45666666664
No 82
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=26.41 E-value=43 Score=17.78 Aligned_cols=9 Identities=44% Similarity=0.626 Sum_probs=3.9
Q ss_pred CcceEeeec
Q 019416 88 SLEYLEFSS 96 (341)
Q Consensus 88 ~L~~L~l~~ 96 (341)
+|+.|+++.
T Consensus 3 ~L~~L~L~~ 11 (26)
T smart00365 3 NLEELDLSQ 11 (26)
T ss_pred ccCEEECCC
Confidence 344444443
No 83
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=22.98 E-value=56 Score=31.70 Aligned_cols=59 Identities=15% Similarity=0.036 Sum_probs=35.0
Q ss_pred CCCCccEEeccCCCCchhh------hcccCCCCcceEeeecCC-CCc---cccCCCCCCCccEEEEeCCCChH
Q 019416 62 AATTVKQLKINKCPDLEVL------LHRMAYTSLEYLEFSSCL-FFS---NSKQDYFPTTLKRLKICDCTNAE 124 (341)
Q Consensus 62 ~l~~L~~L~l~~~~~l~~~------~~~~~l~~L~~L~l~~~~-~l~---~~~~~~~~~~L~~L~l~~~~~~~ 124 (341)
..+.+..+++++ +++.++ -.. .++|+.|+++++. .+. +++..+. ..|+.|-+.|++..+
T Consensus 216 n~p~i~sl~lsn-NrL~~Ld~~sslsq~--apklk~L~LS~N~~~~~~~~el~K~k~-l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSN-NRLYHLDALSSLSQI--APKLKTLDLSHNHSKISSESELDKLKG-LPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeeccc-chhhchhhhhHHHHh--cchhheeecccchhhhcchhhhhhhcC-CCHHHeeecCCcccc
Confidence 357777777777 445444 445 6788888887751 122 2222333 447788888876444
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=22.97 E-value=45 Score=32.35 Aligned_cols=78 Identities=18% Similarity=0.136 Sum_probs=45.9
Q ss_pred CCCCcCeEEcCCCCCCcccc---ccccCCCCccEEeccCCCC-chhh--hcccCCCCcceEeeecCCCCccccC------
Q 019416 38 TGETLESLEIDNLSSLASFL---RSELAATTVKQLKINKCPD-LEVL--LHRMAYTSLEYLEFSSCLFFSNSKQ------ 105 (341)
Q Consensus 38 ~~~~L~~L~l~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~-l~~~--~~~~~l~~L~~L~l~~~~~l~~~~~------ 105 (341)
+.|.+..++|++| .+..+. .-....|+|+.|+|+++.. +... +++.+...|++|.+.+++..+.+..
T Consensus 216 n~p~i~sl~lsnN-rL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~ 294 (585)
T KOG3763|consen 216 NFPEILSLSLSNN-RLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVS 294 (585)
T ss_pred CCcceeeeecccc-hhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHH
Confidence 5778888888875 333331 1123368999999998522 2211 4443356688888888765554422
Q ss_pred --CCCCCCccEEE
Q 019416 106 --DYFPTTLKRLK 116 (341)
Q Consensus 106 --~~~~~~L~~L~ 116 (341)
...+|+|..|+
T Consensus 295 ~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 295 AIRELFPKLLRLD 307 (585)
T ss_pred HHHHhcchheeec
Confidence 12367666664
Done!