Query 019416
Match_columns 341
No_of_seqs 127 out of 1745
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 15:45:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019416.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019416hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v47_A TOLL-like receptor 5B a 99.8 1.7E-19 5.8E-24 169.8 24.0 305 17-334 28-404 (455)
2 4fmz_A Internalin; leucine ric 99.8 7E-20 2.4E-24 166.4 19.9 276 35-336 61-343 (347)
3 2id5_A Lingo-1, leucine rich r 99.8 2.7E-19 9.2E-24 169.6 23.1 127 204-334 199-329 (477)
4 2id5_A Lingo-1, leucine rich r 99.8 3.5E-19 1.2E-23 168.9 23.3 100 207-310 226-330 (477)
5 3rgz_A Protein brassinosteroid 99.8 2.7E-20 9.4E-25 186.5 14.4 130 204-334 417-547 (768)
6 4eco_A Uncharacterized protein 99.8 6.8E-20 2.3E-24 179.8 16.7 138 32-177 239-394 (636)
7 4ecn_A Leucine-rich repeat pro 99.8 2.5E-19 8.6E-24 180.0 20.3 137 32-177 481-636 (876)
8 4fmz_A Internalin; leucine ric 99.8 2.6E-19 8.8E-24 162.7 18.5 280 34-337 38-322 (347)
9 3t6q_A CD180 antigen; protein- 99.8 1.9E-18 6.4E-23 168.6 25.8 146 15-169 29-189 (606)
10 3vq2_A TLR4, TOLL-like recepto 99.8 1.5E-18 5E-23 169.3 23.4 128 15-152 28-168 (606)
11 3o6n_A APL1; leucine-rich repe 99.8 5E-19 1.7E-23 163.5 18.8 268 36-334 65-348 (390)
12 3rgz_A Protein brassinosteroid 99.8 1.2E-19 4.2E-24 181.7 14.8 290 37-337 197-525 (768)
13 4eco_A Uncharacterized protein 99.8 6.7E-19 2.3E-23 172.8 19.7 220 54-295 196-474 (636)
14 1xku_A Decorin; proteoglycan, 99.8 9.8E-18 3.3E-22 151.3 24.6 256 39-334 51-328 (330)
15 2ft3_A Biglycan; proteoglycan, 99.8 3.9E-18 1.3E-22 154.1 20.9 257 39-337 53-331 (332)
16 2z81_A CD282 antigen, TOLL-lik 99.8 3.7E-18 1.3E-22 164.5 21.7 120 17-145 24-157 (549)
17 3t6q_A CD180 antigen; protein- 99.8 2.2E-18 7.7E-23 168.0 20.1 265 36-334 274-556 (606)
18 2z63_A TOLL-like receptor 4, v 99.8 4.9E-18 1.7E-22 164.3 22.3 108 224-334 416-527 (570)
19 3oja_B Anopheles plasmodium-re 99.8 1.7E-18 5.8E-23 168.7 18.9 123 36-169 71-202 (597)
20 4fcg_A Uncharacterized protein 99.8 1.3E-18 4.6E-23 157.0 16.5 225 39-308 80-309 (328)
21 4ecn_A Leucine-rich repeat pro 99.8 2E-18 7E-23 173.5 18.4 130 31-170 506-655 (876)
22 3v47_A TOLL-like receptor 5B a 99.8 3.6E-18 1.2E-22 160.8 19.1 282 40-334 30-380 (455)
23 3vq2_A TLR4, TOLL-like recepto 99.8 8.7E-18 3E-22 163.8 22.0 108 224-334 419-530 (606)
24 1o6v_A Internalin A; bacterial 99.8 1.3E-17 4.4E-22 157.7 21.8 270 35-337 63-364 (466)
25 3o6n_A APL1; leucine-rich repe 99.8 2.1E-17 7.3E-22 152.5 22.1 250 35-312 88-351 (390)
26 2z7x_B TOLL-like receptor 1, v 99.8 2.5E-17 8.7E-22 157.7 23.4 122 15-146 17-148 (520)
27 1o6v_A Internalin A; bacterial 99.8 5.1E-17 1.8E-21 153.6 24.4 269 36-337 86-386 (466)
28 4fcg_A Uncharacterized protein 99.8 6.7E-18 2.3E-22 152.4 17.5 226 86-334 80-310 (328)
29 3bz5_A Internalin-J, INLJ; leu 99.8 1.6E-17 5.3E-22 156.6 20.0 270 36-334 60-348 (457)
30 3bz5_A Internalin-J, INLJ; leu 99.8 7.4E-18 2.5E-22 158.9 16.8 271 34-334 36-327 (457)
31 3j0a_A TOLL-like receptor 5; m 99.8 9.5E-17 3.3E-21 162.4 25.0 308 8-334 15-390 (844)
32 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.1E-16 3.9E-21 154.7 24.4 102 15-121 48-157 (562)
33 3oja_B Anopheles plasmodium-re 99.8 5.9E-17 2E-21 157.8 21.8 249 35-311 94-356 (597)
34 1ziw_A TOLL-like receptor 3; i 99.8 4.5E-17 1.6E-21 160.9 20.9 145 15-169 21-181 (680)
35 1ogq_A PGIP-2, polygalacturona 99.7 3.5E-18 1.2E-22 153.2 10.1 243 40-314 50-305 (313)
36 1ziw_A TOLL-like receptor 3; i 99.7 3.3E-16 1.1E-20 154.8 24.4 126 204-334 479-618 (680)
37 2z7x_B TOLL-like receptor 1, v 99.7 2.6E-16 9E-21 150.6 22.3 119 40-170 21-149 (520)
38 3g06_A SSPH2 (leucine-rich rep 99.7 6.6E-16 2.3E-20 150.3 23.9 248 42-337 42-295 (622)
39 3j0a_A TOLL-like receptor 5; m 99.7 1.3E-15 4.3E-20 154.2 26.6 283 33-334 66-410 (844)
40 1jl5_A Outer protein YOPM; leu 99.7 8.1E-16 2.8E-20 144.8 23.2 254 40-334 131-405 (454)
41 2z81_A CD282 antigen, TOLL-lik 99.7 2.6E-16 8.8E-21 151.6 18.3 123 39-170 25-159 (549)
42 1xku_A Decorin; proteoglycan, 99.7 1.4E-15 4.7E-20 137.2 21.5 257 38-334 29-302 (330)
43 3zyi_A Leucine-rich repeat-con 99.7 5E-16 1.7E-20 146.2 19.2 213 40-288 75-301 (452)
44 3o53_A Protein LRIM1, AGAP0063 99.7 7E-18 2.4E-22 151.5 6.0 125 204-333 143-270 (317)
45 3zyj_A Leucine-rich repeat-con 99.7 7.3E-16 2.5E-20 144.6 19.5 214 39-288 63-290 (440)
46 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 1.7E-15 5.8E-20 146.4 22.3 120 39-170 51-180 (562)
47 4g8a_A TOLL-like receptor 4; l 99.7 1.8E-15 6E-20 147.8 22.5 123 15-146 48-183 (635)
48 1jl5_A Outer protein YOPM; leu 99.7 1.6E-16 5.6E-21 149.5 14.2 242 32-310 26-287 (454)
49 2ft3_A Biglycan; proteoglycan, 99.7 1.5E-15 5E-20 137.2 19.9 259 17-311 52-331 (332)
50 3zyj_A Leucine-rich repeat-con 99.7 2.8E-15 9.7E-20 140.5 20.9 232 41-311 44-290 (440)
51 2z63_A TOLL-like receptor 4, v 99.7 5.8E-16 2E-20 149.7 16.6 249 34-314 276-532 (570)
52 3g06_A SSPH2 (leucine-rich rep 99.7 3.6E-15 1.2E-19 145.1 21.7 93 206-311 202-295 (622)
53 3zyi_A Leucine-rich repeat-con 99.7 3.4E-15 1.2E-19 140.5 20.6 231 42-311 56-301 (452)
54 2z80_A TOLL-like receptor 2, v 99.6 1.8E-15 6.3E-20 137.7 15.0 240 39-314 51-315 (353)
55 1ogq_A PGIP-2, polygalacturona 99.6 1.9E-16 6.6E-21 141.8 8.1 238 64-337 50-302 (313)
56 2z66_A Variable lymphocyte rec 99.6 4.6E-15 1.6E-19 132.2 16.5 105 205-312 150-260 (306)
57 3oja_A Leucine-rich immune mol 99.6 1E-15 3.5E-20 145.4 11.3 232 38-332 32-269 (487)
58 3o53_A Protein LRIM1, AGAP0063 99.6 1.7E-15 5.7E-20 135.9 10.9 236 37-311 31-273 (317)
59 2z80_A TOLL-like receptor 2, v 99.6 1E-14 3.4E-19 132.8 14.8 240 16-288 49-312 (353)
60 2z66_A Variable lymphocyte rec 99.6 2.2E-14 7.4E-19 127.9 15.9 235 43-334 10-257 (306)
61 4ay9_X Follicle-stimulating ho 99.6 5.4E-14 1.8E-18 127.9 17.1 213 39-286 29-255 (350)
62 2xwt_C Thyrotropin receptor; s 99.6 2.7E-14 9.1E-19 122.7 14.3 100 209-311 134-237 (239)
63 1ozn_A Reticulon 4 receptor; N 99.6 1.3E-13 4.4E-18 121.6 19.0 213 67-313 14-238 (285)
64 1ozn_A Reticulon 4 receptor; N 99.6 9.9E-14 3.4E-18 122.3 18.2 80 206-288 154-236 (285)
65 2xwt_C Thyrotropin receptor; s 99.6 6.9E-14 2.4E-18 120.1 15.7 125 206-338 106-238 (239)
66 1p9a_G Platelet glycoprotein I 99.5 1.2E-13 4.3E-18 122.1 16.3 193 35-264 5-206 (290)
67 4ay9_X Follicle-stimulating ho 99.5 2.8E-13 9.7E-18 123.1 17.9 232 43-309 12-255 (350)
68 1wwl_A Monocyte differentiatio 99.5 7.3E-15 2.5E-19 131.5 5.3 121 36-169 39-183 (312)
69 3ogk_B Coronatine-insensitive 99.5 6E-14 2.1E-18 136.2 11.0 281 38-337 162-524 (592)
70 2p1m_B Transport inhibitor res 99.5 7.6E-15 2.6E-19 142.5 4.2 81 38-121 103-195 (594)
71 1h6u_A Internalin H; cell adhe 99.5 1.1E-13 3.7E-18 123.6 11.3 123 35-169 36-161 (308)
72 1p9a_G Platelet glycoprotein I 99.5 1.4E-12 4.8E-17 115.3 17.4 192 86-311 9-206 (290)
73 3oja_A Leucine-rich immune mol 99.5 1.8E-13 6.2E-18 129.9 12.3 212 34-285 52-270 (487)
74 1z7x_W Ribonuclease inhibitor; 99.5 5.7E-15 2E-19 139.0 1.2 285 35-337 51-409 (461)
75 1h6u_A Internalin H; cell adhe 99.5 4.9E-13 1.7E-17 119.3 12.9 194 60-294 37-233 (308)
76 2o6q_A Variable lymphocyte rec 99.5 3E-12 1E-16 111.9 17.6 191 88-311 17-216 (270)
77 1z7x_W Ribonuclease inhibitor; 99.5 1.3E-14 4.6E-19 136.5 2.4 130 36-170 24-181 (461)
78 2ast_B S-phase kinase-associat 99.5 1.9E-14 6.4E-19 129.8 3.2 233 40-310 47-303 (336)
79 3rfs_A Internalin B, repeat mo 99.5 4.9E-13 1.7E-17 117.1 12.1 201 35-276 36-245 (272)
80 2z62_A TOLL-like receptor 4, v 99.4 1.2E-12 4.1E-17 114.8 13.7 191 40-287 28-234 (276)
81 2ast_B S-phase kinase-associat 99.4 1.3E-14 4.6E-19 130.8 1.0 196 40-263 70-282 (336)
82 2p1m_B Transport inhibitor res 99.4 5.3E-14 1.8E-18 136.6 4.9 282 38-338 128-518 (594)
83 4glp_A Monocyte differentiatio 99.4 1.2E-11 4E-16 110.4 19.6 214 64-310 64-304 (310)
84 3ogk_B Coronatine-insensitive 99.4 6.1E-14 2.1E-18 136.1 4.6 131 204-337 292-447 (592)
85 2o6q_A Variable lymphocyte rec 99.4 9.3E-12 3.2E-16 108.8 17.7 115 41-168 17-142 (270)
86 1wwl_A Monocyte differentiatio 99.4 1.2E-12 4.1E-17 117.0 12.1 191 62-287 93-306 (312)
87 2z62_A TOLL-like receptor 4, v 99.4 9.4E-12 3.2E-16 109.0 15.7 193 86-310 27-234 (276)
88 4glp_A Monocyte differentiatio 99.4 5.5E-12 1.9E-16 112.5 12.7 221 39-291 63-307 (310)
89 2ca6_A RAN GTPase-activating p 99.4 3.5E-13 1.2E-17 124.1 4.9 231 34-287 26-313 (386)
90 3cvr_A Invasion plasmid antige 99.3 2.1E-11 7E-16 117.4 15.2 110 41-168 60-169 (571)
91 3rfs_A Internalin B, repeat mo 99.3 6.8E-11 2.3E-15 103.4 17.1 191 89-311 21-216 (272)
92 1h6t_A Internalin B; cell adhe 99.3 8.9E-12 3E-16 110.2 10.3 122 36-169 42-166 (291)
93 4g8a_A TOLL-like receptor 4; l 99.3 1E-10 3.5E-15 114.0 18.6 257 36-311 302-578 (635)
94 2ca6_A RAN GTPase-activating p 99.3 5.6E-13 1.9E-17 122.7 1.9 233 53-314 21-317 (386)
95 4ezg_A Putative uncharacterize 99.3 3E-11 1E-15 100.4 11.7 122 206-334 67-190 (197)
96 3cvr_A Invasion plasmid antige 99.3 6.4E-11 2.2E-15 113.9 15.4 178 87-314 59-244 (571)
97 3m19_A Variable lymphocyte rec 99.2 3.6E-10 1.2E-14 97.5 17.4 169 111-311 15-190 (251)
98 4ezg_A Putative uncharacterize 99.2 2E-10 6.7E-15 95.4 13.9 146 136-311 44-192 (197)
99 1h6t_A Internalin B; cell adhe 99.2 5.2E-11 1.8E-15 105.3 10.7 99 61-169 43-144 (291)
100 1m9s_A Internalin B; cell inva 99.2 6.4E-11 2.2E-15 115.0 10.3 167 35-239 38-207 (605)
101 1m9s_A Internalin B; cell inva 99.2 5.9E-11 2E-15 115.2 9.1 98 61-168 40-140 (605)
102 3m19_A Variable lymphocyte rec 99.1 5.5E-10 1.9E-14 96.3 13.5 143 17-170 33-190 (251)
103 1xeu_A Internalin C; cellular 99.1 2.2E-10 7.6E-15 99.7 9.4 142 136-310 41-182 (263)
104 3goz_A Leucine-rich repeat-con 99.1 9.7E-12 3.3E-16 113.4 0.5 80 206-287 168-263 (362)
105 2o6s_A Variable lymphocyte rec 99.1 7E-10 2.4E-14 92.8 11.3 120 39-169 27-158 (208)
106 3goz_A Leucine-rich repeat-con 99.1 6.6E-11 2.3E-15 107.9 4.9 227 38-288 20-295 (362)
107 1xeu_A Internalin C; cellular 99.1 2.4E-10 8.2E-15 99.4 8.2 78 36-120 37-116 (263)
108 3e6j_A Variable lymphocyte rec 99.0 5.6E-09 1.9E-13 88.7 13.1 125 206-334 41-168 (229)
109 2v9t_B SLIT homolog 2 protein 99.0 9.9E-09 3.4E-13 86.7 13.9 124 206-334 33-161 (220)
110 1dce_A Protein (RAB geranylger 99.0 7.7E-12 2.6E-16 120.6 -6.4 85 206-295 464-550 (567)
111 3e6j_A Variable lymphocyte rec 99.0 3.1E-09 1.1E-13 90.3 10.5 121 39-170 39-170 (229)
112 2v9t_B SLIT homolog 2 protein 98.9 6.7E-09 2.3E-13 87.7 10.5 121 40-170 32-163 (220)
113 2o6s_A Variable lymphocyte rec 98.9 3.9E-08 1.3E-12 82.0 14.3 124 206-334 29-157 (208)
114 2ell_A Acidic leucine-rich nuc 98.9 5.3E-09 1.8E-13 84.3 8.6 127 205-337 24-158 (168)
115 2xot_A Amphoterin-induced prot 98.9 2.3E-08 7.9E-13 90.9 13.7 167 113-311 21-200 (361)
116 2v70_A SLIT-2, SLIT homolog 2 98.9 2.6E-08 8.9E-13 84.1 12.4 29 91-121 15-43 (220)
117 2je0_A Acidic leucine-rich nuc 98.8 4.4E-09 1.5E-13 82.9 6.9 124 205-333 17-148 (149)
118 2ell_A Acidic leucine-rich nuc 98.8 5.1E-09 1.7E-13 84.3 7.1 123 37-170 21-158 (168)
119 2xot_A Amphoterin-induced prot 98.8 1.5E-08 5E-13 92.2 10.9 167 90-288 21-200 (361)
120 2v70_A SLIT-2, SLIT homolog 2 98.8 7.6E-08 2.6E-12 81.2 13.8 124 206-334 33-162 (220)
121 2je0_A Acidic leucine-rich nuc 98.8 6.6E-09 2.3E-13 81.9 6.1 120 38-167 15-148 (149)
122 3sb4_A Hypothetical leucine ri 98.7 1.6E-07 5.5E-12 84.1 14.5 97 229-331 226-327 (329)
123 1a9n_A U2A', U2A'; complex (nu 98.7 2.3E-08 8E-13 81.2 5.8 123 36-170 15-151 (176)
124 1a9n_A U2A', U2A'; complex (nu 98.7 3.5E-08 1.2E-12 80.1 6.7 124 205-334 19-149 (176)
125 3sb4_A Hypothetical leucine ri 98.6 1E-07 3.5E-12 85.4 10.1 95 205-305 226-326 (329)
126 4fdw_A Leucine rich hypothetic 98.6 2.7E-06 9.3E-11 78.3 19.8 80 223-308 294-378 (401)
127 2wfh_A SLIT homolog 2 protein 98.6 4E-07 1.4E-11 75.1 11.9 102 206-311 32-137 (193)
128 1dce_A Protein (RAB geranylger 98.6 1.5E-07 5.1E-12 90.7 8.9 113 41-165 442-566 (567)
129 1w8a_A SLIT protein; signaling 98.6 5.3E-07 1.8E-11 74.2 11.1 102 206-311 30-137 (192)
130 2o6r_A Variable lymphocyte rec 98.5 1.5E-06 5.3E-11 70.2 12.7 105 205-313 28-137 (177)
131 2wfh_A SLIT homolog 2 protein 98.5 5.4E-07 1.8E-11 74.3 9.9 98 39-146 30-136 (193)
132 4fdw_A Leucine rich hypothetic 98.5 3E-05 1E-09 71.3 21.3 248 39-334 112-379 (401)
133 1w8a_A SLIT protein; signaling 98.4 1.3E-06 4.3E-11 71.9 10.6 81 205-287 54-136 (192)
134 2o6r_A Variable lymphocyte rec 98.4 2.7E-06 9.1E-11 68.8 12.4 121 207-334 9-133 (177)
135 3e4g_A ATP synthase subunit S, 98.4 1.3E-07 4.4E-12 76.2 3.8 65 274-340 82-153 (176)
136 4b8c_D Glucose-repressible alc 98.4 4.4E-07 1.5E-11 90.1 6.9 103 206-312 225-328 (727)
137 4b8c_D Glucose-repressible alc 98.3 1.1E-06 3.9E-11 87.1 7.1 81 204-287 246-326 (727)
138 4fs7_A Uncharacterized protein 98.2 9.4E-05 3.2E-09 67.7 18.8 58 35-96 66-126 (394)
139 2r9u_A Variable lymphocyte rec 98.2 1.1E-05 3.8E-10 65.1 10.9 98 208-311 15-116 (174)
140 3g39_A Variable lymphocyte rec 98.2 1.4E-05 4.7E-10 64.3 10.9 99 207-311 11-113 (170)
141 2r9u_A Variable lymphocyte rec 98.2 7.3E-06 2.5E-10 66.2 9.2 80 206-288 34-116 (174)
142 3e4g_A ATP synthase subunit S, 98.1 1.7E-06 5.7E-11 69.7 4.3 10 65-74 62-71 (176)
143 3g39_A Variable lymphocyte rec 98.1 1.1E-05 3.8E-10 64.8 9.2 80 206-288 31-113 (170)
144 1ds9_A Outer arm dynein; leuci 98.1 3.6E-08 1.2E-12 81.6 -6.7 123 203-331 46-180 (198)
145 1ds9_A Outer arm dynein; leuci 98.1 1.9E-08 6.6E-13 83.3 -8.6 80 36-121 44-126 (198)
146 4gt6_A Cell surface protein; l 98.0 0.0022 7.4E-08 58.5 22.6 78 36-119 59-146 (394)
147 2ifg_A High affinity nerve gro 97.9 4.7E-05 1.6E-09 68.3 10.4 100 209-311 12-114 (347)
148 4fs7_A Uncharacterized protein 97.9 0.00078 2.7E-08 61.5 18.2 37 35-73 89-126 (394)
149 2ifg_A High affinity nerve gro 97.9 4E-05 1.4E-09 68.8 8.6 82 36-121 27-114 (347)
150 2ra8_A Uncharacterized protein 97.8 2.1E-05 7E-10 71.3 6.5 81 60-144 135-227 (362)
151 4h09_A Hypothetical leucine ri 97.8 0.0051 1.7E-07 55.6 21.8 75 36-119 42-122 (379)
152 2ra8_A Uncharacterized protein 97.8 9.1E-05 3.1E-09 67.0 9.2 127 36-169 168-317 (362)
153 3un9_A NLR family member X1; l 97.6 7.2E-06 2.5E-10 74.7 0.2 78 39-121 71-166 (372)
154 4gt6_A Cell surface protein; l 97.4 0.023 7.9E-07 51.6 20.4 104 223-334 259-366 (394)
155 1io0_A Tropomodulin; LRR prote 97.1 0.00098 3.3E-08 54.1 7.0 108 35-146 31-161 (185)
156 3rw6_A Nuclear RNA export fact 96.9 0.00067 2.3E-08 58.4 3.8 59 62-124 168-234 (267)
157 4h09_A Hypothetical leucine ri 96.8 0.22 7.4E-06 44.7 20.7 73 35-117 64-142 (379)
158 3un9_A NLR family member X1; l 96.8 0.0017 5.8E-08 58.9 5.9 127 39-170 100-250 (372)
159 1io0_A Tropomodulin; LRR prote 96.1 0.0053 1.8E-07 49.7 4.7 106 60-169 32-161 (185)
160 3rw6_A Nuclear RNA export fact 95.9 0.0042 1.5E-07 53.4 3.4 60 81-149 166-233 (267)
161 1pgv_A TMD-1, tropomodulin TMD 89.5 0.51 1.7E-05 38.3 5.3 81 36-120 37-136 (197)
162 1pgv_A TMD-1, tropomodulin TMD 84.7 2.1 7E-05 34.6 6.3 79 64-145 41-135 (197)
163 3rfe_A Platelet glycoprotein I 84.6 1.6 5.5E-05 32.6 5.3 41 220-263 24-65 (130)
164 3rfe_A Platelet glycoprotein I 83.4 1.6 5.6E-05 32.5 4.9 8 66-73 33-40 (130)
No 1
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.85 E-value=1.7e-19 Score=169.84 Aligned_cols=305 Identities=15% Similarity=0.120 Sum_probs=186.4
Q ss_pred CchhhhhhcccCCC---ccccCCCCCCCcCeEEcCCCCCCccc-cccccCCCCccEEeccCCCCchhh----hcccCCCC
Q 019416 17 VPKNFLALALFPDE---DKILGIRTGETLESLEIDNLSSLASF-LRSELAATTVKQLKINKCPDLEVL----LHRMAYTS 88 (341)
Q Consensus 17 ~~~~~~~l~~~~~~---~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~ 88 (341)
+|..+..|.+..+. .....+..+++|++|++++|.....+ +..+.++++|++|++++| .+... ++. +++
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~--l~~ 104 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-QFLQLETGAFNG--LAN 104 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC-TTCEECTTTTTT--CTT
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC-ccCccChhhccC--ccc
Confidence 55666666665442 11345677888888888876544344 344667788888888874 34333 667 778
Q ss_pred cceEeeecCCCCcc-cc-C--CCCCCCccEEEEeCCCChHHHHHHhhhh-cc--cccceEeecCCCCccccCCC--C---
Q 019416 89 LEYLEFSSCLFFSN-SK-Q--DYFPTTLKRLKICDCTNAELILKVLMDQ-KG--LALESLEVDGCSSLFSLPIN--Q--- 156 (341)
Q Consensus 89 L~~L~l~~~~~l~~-~~-~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~--~~L~~L~l~~~~~l~~l~~~--~--- 156 (341)
|++|++++| .+.. .+ . ...+++|++|++++|..... .|.. +. ++|++|+++++ .++..+.. .
T Consensus 105 L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~ 178 (455)
T 3v47_A 105 LEVLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI----QPASFFLNMRRFHVLDLTFN-KVKSICEEDLLNFQ 178 (455)
T ss_dssp CCEEECTTS-CCBTHHHHSSTTTTCTTCCEEECCSSBCCSC----CCCGGGGGCTTCCEEECTTC-CBSCCCTTTSGGGT
T ss_pred CCEEeCCCC-CCCccccCcccccCcccCCEEECCCCccCcc----CcccccCCCCcccEEeCCCC-cccccChhhhhccc
Confidence 888888776 3332 22 2 34467788888887764332 3433 22 77778877764 33333221 1
Q ss_pred -------------------------------CccccceEEeeccCCccccC------------cceeeeCCCCCCcCCCc
Q 019416 157 -------------------------------LPATLRHLRIVNCMNLKSLG------------ESSKIRNCDSVVGPEGE 193 (341)
Q Consensus 157 -------------------------------~~~~L~~L~l~~~~~l~~~~------------~~l~l~~~~~l~~~~~~ 193 (341)
..++|+.|+++++.--...+ ..+.++++.......+.
T Consensus 179 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 258 (455)
T 3v47_A 179 GKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH 258 (455)
T ss_dssp TCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTC
T ss_pred cccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccch
Confidence 11345555555542111110 02333333221110000
Q ss_pred cccc-----ccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecC-CCCCCCCcceEecccCcccc
Q 019416 194 SSLE-----NMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPE-GGLPNTSLTSLLISECENLM 267 (341)
Q Consensus 194 ~~~~-----~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~l~~~~~l~ 267 (341)
..+. .+.....++|+.|+++++......|..+..+++|+.|++++|. +..++. ....+++|++|+++++ .++
T Consensus 259 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~ 336 (455)
T 3v47_A 259 TNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQN-FLG 336 (455)
T ss_dssp CSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCC
T ss_pred hhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCc-ccccChhHhcCcccCCEEECCCC-ccC
Confidence 0000 0100012469999999976656667888999999999999975 555544 3334679999999996 577
Q ss_pred cc-hhhhccCCCcCeEeecCCCCCccCCCC--CCCCCccEEEeecCCCCCccccccccCCCceeEEEEeC
Q 019416 268 SL-PHQIHKATSLQDLSVSGCPSLMSFPHG--GLPPNLISLGIIDCENLIPLSQWELHKLKHLNKYTILG 334 (341)
Q Consensus 268 ~l-~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~c~~~~~~~~~~i~~~~~L~~l~l~~ 334 (341)
.+ +..+..+++|++|++++| .+..++.. ...++|++|+++++. ++..+...+..+++|++|++++
T Consensus 337 ~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~ 404 (455)
T 3v47_A 337 SIDSRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHT 404 (455)
T ss_dssp EECGGGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCS
T ss_pred CcChhHhcCcccCCEEECCCC-cccccChhhccccccccEEECCCCc-cccCCHhHhccCCcccEEEccC
Confidence 66 567889999999999986 56666433 346899999999974 4444433468899999999988
No 2
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.85 E-value=7e-20 Score=166.43 Aligned_cols=276 Identities=16% Similarity=0.117 Sum_probs=156.7
Q ss_pred CCCCCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh--hcccCCCCcceEeeecCCCCccccCCCCCCCc
Q 019416 35 GIRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL--LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTL 112 (341)
Q Consensus 35 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L 112 (341)
++..+++|++|++++| .++.++. +..+++|++|++++| .+..+ +.. +++|++|++++| .+..++....+++|
T Consensus 61 ~~~~~~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~L~~n-~i~~~~~~~~--l~~L~~L~l~~n-~i~~~~~~~~l~~L 134 (347)
T 4fmz_A 61 GIEYLTNLEYLNLNGN-QITDISP-LSNLVKLTNLYIGTN-KITDISALQN--LTNLRELYLNED-NISDISPLANLTKM 134 (347)
T ss_dssp TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCGGGTT--CTTCSEEECTTS-CCCCCGGGTTCTTC
T ss_pred hhhhcCCccEEEccCC-ccccchh-hhcCCcCCEEEccCC-cccCchHHcC--CCcCCEEECcCC-cccCchhhccCCce
Confidence 4556777777777765 4444444 566677777777764 44444 666 777777777664 45555545556777
Q ss_pred cEEEEeCCCChHHHHHHhhhhcc-cccceEeecCCCCccccCCCCCccccceEEeeccCCccccCcceeeeCCCCCCc-C
Q 019416 113 KRLKICDCTNAELILKVLMDQKG-LALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVG-P 190 (341)
Q Consensus 113 ~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~-~ 190 (341)
++|++++|..... ++.... ++|++|++.++ .+..++....+++|+.|+++++. +..++. +..++.++. .
T Consensus 135 ~~L~l~~n~~~~~----~~~~~~l~~L~~L~l~~~-~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~ 205 (347)
T 4fmz_A 135 YSLNLGANHNLSD----LSPLSNMTGLNYLTVTES-KVKDVTPIANLTDLYSLSLNYNQ-IEDISP---LASLTSLHYFT 205 (347)
T ss_dssp CEEECTTCTTCCC----CGGGTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECTTSC-CCCCGG---GGGCTTCCEEE
T ss_pred eEEECCCCCCccc----ccchhhCCCCcEEEecCC-CcCCchhhccCCCCCEEEccCCc-cccccc---ccCCCccceee
Confidence 7777777654444 333222 67777777664 34444333455677777776652 333322 112222221 0
Q ss_pred CCcccccccc-cccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccc
Q 019416 191 EGESSLENMT-SSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSL 269 (341)
Q Consensus 191 ~~~~~~~~l~-~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l 269 (341)
.....+...+ ...+++|++|++++|. +..++. +..+++|++|++++|. +..++. ...+++|++|+++++ .++.+
T Consensus 206 l~~n~l~~~~~~~~~~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n-~l~~~ 280 (347)
T 4fmz_A 206 AYVNQITDITPVANMTRLNSLKIGNNK-ITDLSP-LANLSQLTWLEIGTNQ-ISDINA-VKDLTKLKMLNVGSN-QISDI 280 (347)
T ss_dssp CCSSCCCCCGGGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSS-CCCCC
T ss_pred cccCCCCCCchhhcCCcCCEEEccCCc-cCCCcc-hhcCCCCCEEECCCCc-cCCChh-HhcCCCcCEEEccCC-ccCCC
Confidence 0000000010 1134467788887753 344443 6677788888887763 443332 222357888888875 46666
Q ss_pred hhhhccCCCcCeEeecCCCCCccCCCC--CCCCCccEEEeecCCCCCccccccccCCCceeEEEEeCCC
Q 019416 270 PHQIHKATSLQDLSVSGCPSLMSFPHG--GLPPNLISLGIIDCENLIPLSQWELHKLKHLNKYTILGGL 336 (341)
Q Consensus 270 ~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~c~~~~~~~~~~i~~~~~L~~l~l~~~C 336 (341)
+ .+..+++|+.|++++| .+...+.. ...++|++|++++|+.....+ +..+++|+++++++ |
T Consensus 281 ~-~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~-N 343 (347)
T 4fmz_A 281 S-VLNNLSQLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFLSQNHITDIRP---LASLSKMDSADFAN-Q 343 (347)
T ss_dssp G-GGGGCTTCSEEECCSS-CCCGGGHHHHHTCTTCSEEECCSSSCCCCGG---GGGCTTCSEESSSC-C
T ss_pred h-hhcCCCCCCEEECcCC-cCCCcChhHhhccccCCEEEccCCccccccC---hhhhhccceeehhh-h
Confidence 4 5677788888888775 34433322 235778888888876333222 36677888888877 5
No 3
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.84 E-value=2.7e-19 Score=169.65 Aligned_cols=127 Identities=20% Similarity=0.185 Sum_probs=86.5
Q ss_pred ccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCC-CCCCCCcceEecccCcccccchh-hhccCCCcCe
Q 019416 204 TLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEG-GLPNTSLTSLLISECENLMSLPH-QIHKATSLQD 281 (341)
Q Consensus 204 ~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~ 281 (341)
+++|+.|+++++..+..++.......+|+.|++++| .++.++.. ...+++|++|+++++ .++.++. .+..+++|+.
T Consensus 199 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~ 276 (477)
T 2id5_A 199 LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYN-PISTIEGSMLHELLRLQE 276 (477)
T ss_dssp CTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS-CCCSCCHHHHTTCTTCCEEECCSS-CCCEECTTSCTTCTTCCE
T ss_pred CcccceeeCCCCccccccCcccccCccccEEECcCC-cccccCHHHhcCccccCeeECCCC-cCCccChhhccccccCCE
Confidence 446888888887777777766655668888888886 35544431 122358888888885 4666553 5677888888
Q ss_pred EeecCCCCCccCCCC--CCCCCccEEEeecCCCCCccccccccCCCceeEEEEeC
Q 019416 282 LSVSGCPSLMSFPHG--GLPPNLISLGIIDCENLIPLSQWELHKLKHLNKYTILG 334 (341)
Q Consensus 282 L~l~~c~~l~~~~~~--~~~~~L~~L~l~~c~~~~~~~~~~i~~~~~L~~l~l~~ 334 (341)
|+++++ .+..+... ...++|++|+++++. ++..+...+..+++|++|++++
T Consensus 277 L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~ 329 (477)
T 2id5_A 277 IQLVGG-QLAVVEPYAFRGLNYLRVLNVSGNQ-LTTLEESVFHSVGNLETLILDS 329 (477)
T ss_dssp EECCSS-CCSEECTTTBTTCTTCCEEECCSSC-CSCCCGGGBSCGGGCCEEECCS
T ss_pred EECCCC-ccceECHHHhcCcccCCEEECCCCc-CceeCHhHcCCCcccCEEEccC
Confidence 888874 56655443 235789999998874 4433332467788999998887
No 4
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.84 E-value=3.5e-19 Score=168.86 Aligned_cols=100 Identities=22% Similarity=0.266 Sum_probs=44.2
Q ss_pred cceEeeccCcCCCccc-ccCCCCCCcCeEEeecCCCCceecCCC-CCCCCcceEecccCcccccc-hhhhccCCCcCeEe
Q 019416 207 LRELEIWDCLELEFLP-EDMHNFTDLNLLSISNCPSLESFPEGG-LPNTSLTSLLISECENLMSL-PHQIHKATSLQDLS 283 (341)
Q Consensus 207 L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~~~~~~-~~~~~L~~L~l~~~~~l~~l-~~~l~~l~~L~~L~ 283 (341)
|+.|+++++ .+..+| ..+..+++|+.|+++++. +..++... ..+++|++|+++++ .++.+ +..+..+++|+.|+
T Consensus 226 L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 302 (477)
T 2id5_A 226 LTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLN 302 (477)
T ss_dssp CSEEEEESS-CCCSCCHHHHTTCTTCCEEECCSSC-CCEECTTSCTTCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEE
T ss_pred ccEEECcCC-cccccCHHHhcCccccCeeECCCCc-CCccChhhccccccCCEEECCCC-ccceECHHHhcCcccCCEEE
Confidence 555555553 233333 234445555555555532 33333221 12345555555553 23333 33444555555555
Q ss_pred ecCCCCCccCCCCC--CCCCccEEEeecC
Q 019416 284 VSGCPSLMSFPHGG--LPPNLISLGIIDC 310 (341)
Q Consensus 284 l~~c~~l~~~~~~~--~~~~L~~L~l~~c 310 (341)
++++ .++.++... ..++|++|++.++
T Consensus 303 L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 303 VSGN-QLTTLEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp CCSS-CCSCCCGGGBSCGGGCCEEECCSS
T ss_pred CCCC-cCceeCHhHcCCCcccCEEEccCC
Confidence 5543 344444321 1345555555544
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.83 E-value=2.7e-20 Score=186.47 Aligned_cols=130 Identities=17% Similarity=0.104 Sum_probs=76.3
Q ss_pred ccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccchhhhccCCCcCeEe
Q 019416 204 TLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQIHKATSLQDLS 283 (341)
Q Consensus 204 ~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~ 283 (341)
+++|+.|+++++.....+|..++.+++|+.|++++|.-...+|.....+++|++|+++++.-...+|..+..+++|+.|+
T Consensus 417 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 496 (768)
T 3rgz_A 417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS 496 (768)
T ss_dssp CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred CCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEE
Confidence 34455566655543334555556666666666666543333443333345777777777543335666677777777777
Q ss_pred ecCCCCCccCCCC-CCCCCccEEEeecCCCCCccccccccCCCceeEEEEeC
Q 019416 284 VSGCPSLMSFPHG-GLPPNLISLGIIDCENLIPLSQWELHKLKHLNKYTILG 334 (341)
Q Consensus 284 l~~c~~l~~~~~~-~~~~~L~~L~l~~c~~~~~~~~~~i~~~~~L~~l~l~~ 334 (341)
+++|.-...+|.. +..++|++|++++|......+. .+..+++|+.+++++
T Consensus 497 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~Ls~ 547 (768)
T 3rgz_A 497 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA-ELGDCRSLIWLDLNT 547 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCG-GGGGCTTCCEEECCS
T ss_pred ccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCH-HHcCCCCCCEEECCC
Confidence 7765433344443 3356777777777755444444 367777777777776
No 6
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.83 E-value=6.8e-20 Score=179.79 Aligned_cols=138 Identities=14% Similarity=0.061 Sum_probs=101.6
Q ss_pred cccCCC--CCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchh--h---hcc----cCCCCcceEeeecCCCC
Q 019416 32 KILGIR--TGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEV--L---LHR----MAYTSLEYLEFSSCLFF 100 (341)
Q Consensus 32 ~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~--~---~~~----~~l~~L~~L~l~~~~~l 100 (341)
++..++ .+++|++|++++|.....+|..+..+++|++|++++|..+.. + ++. ..+++|++|++++| .+
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l 317 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NL 317 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CC
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cC
Confidence 566677 899999999999877777888899999999999999653543 3 444 00389999999986 55
Q ss_pred ccccC---CCCCCCccEEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCCC-CCccc-cceEEeeccCCcc
Q 019416 101 SNSKQ---DYFPTTLKRLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPIN-QLPAT-LRHLRIVNCMNLK 173 (341)
Q Consensus 101 ~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~-~~~~~-L~~L~l~~~~~l~ 173 (341)
..+|. .+.+++|++|++++|..... +| .+. ++|++|+++++ .++.+|.. ..+++ |+.|+++++. +.
T Consensus 318 ~~ip~~~~l~~l~~L~~L~L~~N~l~g~----ip-~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~~L~~L~Ls~N~-l~ 390 (636)
T 4eco_A 318 KTFPVETSLQKMKKLGMLECLYNQLEGK----LP-AFGSEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHNK-LK 390 (636)
T ss_dssp SSCCCHHHHTTCTTCCEEECCSCCCEEE----CC-CCEEEEEESEEECCSS-EEEECCTTSEEECTTCCEEECCSSC-CS
T ss_pred CccCchhhhccCCCCCEEeCcCCcCccc----hh-hhCCCCCCCEEECCCC-ccccccHhhhhhcccCcEEEccCCc-Cc
Confidence 57776 55688999999999875435 67 444 88888888874 56666654 34556 8888887754 44
Q ss_pred ccCc
Q 019416 174 SLGE 177 (341)
Q Consensus 174 ~~~~ 177 (341)
.+|.
T Consensus 391 ~lp~ 394 (636)
T 4eco_A 391 YIPN 394 (636)
T ss_dssp SCCS
T ss_pred ccch
Confidence 5543
No 7
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.83 E-value=2.5e-19 Score=180.04 Aligned_cols=137 Identities=13% Similarity=0.071 Sum_probs=99.7
Q ss_pred cccCCC--CCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchh--h---hcc-----cCCCCcceEeeecCCC
Q 019416 32 KILGIR--TGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEV--L---LHR-----MAYTSLEYLEFSSCLF 99 (341)
Q Consensus 32 ~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~--~---~~~-----~~l~~L~~L~l~~~~~ 99 (341)
++..++ .+++|++|++++|.....+|..+..+++|+.|++++|..+.. + ++. ..+++|+.|++++| .
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~ 559 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-N 559 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-C
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-c
Confidence 555666 899999999999877778888888999999999999652443 2 333 00559999999886 5
Q ss_pred CccccC---CCCCCCccEEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCCC-CCccc-cceEEeeccCCc
Q 019416 100 FSNSKQ---DYFPTTLKRLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPIN-QLPAT-LRHLRIVNCMNL 172 (341)
Q Consensus 100 l~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~-~~~~~-L~~L~l~~~~~l 172 (341)
+..+|. ...+++|+.|++++|... . +| .++ ++|+.|+++++ .+..+|.. ..+++ |+.|+++++. +
T Consensus 560 L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~----lp-~~~~L~~L~~L~Ls~N-~l~~lp~~l~~l~~~L~~L~Ls~N~-L 631 (876)
T 4ecn_A 560 LEEFPASASLQKMVKLGLLDCVHNKVR-H----LE-AFGTNVKLTDLKLDYN-QIEEIPEDFCAFTDQVEGLGFSHNK-L 631 (876)
T ss_dssp CCBCCCHHHHTTCTTCCEEECTTSCCC-B----CC-CCCTTSEESEEECCSS-CCSCCCTTSCEECTTCCEEECCSSC-C
T ss_pred CCccCChhhhhcCCCCCEEECCCCCcc-c----ch-hhcCCCcceEEECcCC-ccccchHHHhhccccCCEEECcCCC-C
Confidence 557776 556888999999988643 5 77 444 88888888874 55566654 44566 8888888764 4
Q ss_pred cccCc
Q 019416 173 KSLGE 177 (341)
Q Consensus 173 ~~~~~ 177 (341)
..+|.
T Consensus 632 ~~lp~ 636 (876)
T 4ecn_A 632 KYIPN 636 (876)
T ss_dssp CSCCS
T ss_pred CcCch
Confidence 45553
No 8
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.83 E-value=2.6e-19 Score=162.70 Aligned_cols=280 Identities=16% Similarity=0.104 Sum_probs=200.0
Q ss_pred cCCCCCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh--hcccCCCCcceEeeecCCCCccccCCCCCCC
Q 019416 34 LGIRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL--LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTT 111 (341)
Q Consensus 34 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 111 (341)
..+..+++|++|+++++ .++.++. +..+++|++|++++| .+.++ +.. +++|++|++++| .+..++....+++
T Consensus 38 ~~~~~l~~L~~L~l~~~-~i~~~~~-~~~~~~L~~L~l~~n-~i~~~~~~~~--l~~L~~L~L~~n-~i~~~~~~~~l~~ 111 (347)
T 4fmz_A 38 VTQEELESITKLVVAGE-KVASIQG-IEYLTNLEYLNLNGN-QITDISPLSN--LVKLTNLYIGTN-KITDISALQNLTN 111 (347)
T ss_dssp ECHHHHTTCSEEECCSS-CCCCCTT-GGGCTTCCEEECCSS-CCCCCGGGTT--CTTCCEEECCSS-CCCCCGGGTTCTT
T ss_pred ccchhcccccEEEEeCC-ccccchh-hhhcCCccEEEccCC-ccccchhhhc--CCcCCEEEccCC-cccCchHHcCCCc
Confidence 34557999999999986 4555554 777999999999995 55555 888 999999999986 7777777777899
Q ss_pred ccEEEEeCCCChHHHHHHhhhhcc-cccceEeecCCCCccccCCCCCccccceEEeeccCCccccCcceeeeCCCCCCc-
Q 019416 112 LKRLKICDCTNAELILKVLMDQKG-LALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVG- 189 (341)
Q Consensus 112 L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~- 189 (341)
|++|++++|. +.. ++.... ++|++|++++|.....++....+++|+.|+++++. +..++. +..+++++.
T Consensus 112 L~~L~l~~n~-i~~----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~---~~~l~~L~~L 182 (347)
T 4fmz_A 112 LRELYLNEDN-ISD----ISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP---IANLTDLYSL 182 (347)
T ss_dssp CSEEECTTSC-CCC----CGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG---GGGCTTCSEE
T ss_pred CCEEECcCCc-ccC----chhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh---hccCCCCCEE
Confidence 9999999987 344 444222 99999999998888777666777899999999864 333322 222233222
Q ss_pred CCCcccccccc-cccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCccccc
Q 019416 190 PEGESSLENMT-SSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMS 268 (341)
Q Consensus 190 ~~~~~~~~~l~-~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~ 268 (341)
......+..++ ...+++|+.++++++. +..++. +..+++|++|++++|. +..++. ...+++|++|+++++ .++.
T Consensus 183 ~l~~n~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n-~l~~ 257 (347)
T 4fmz_A 183 SLNYNQIEDISPLASLTSLHYFTAYVNQ-ITDITP-VANMTRLNSLKIGNNK-ITDLSP-LANLSQLTWLEIGTN-QISD 257 (347)
T ss_dssp ECTTSCCCCCGGGGGCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSS-CCCC
T ss_pred EccCCcccccccccCCCccceeecccCC-CCCCch-hhcCCcCCEEEccCCc-cCCCcc-hhcCCCCCEEECCCC-ccCC
Confidence 00000011111 1245578888888864 344433 6778899999999874 444443 233469999999986 5777
Q ss_pred chhhhccCCCcCeEeecCCCCCccCCCCCCCCCccEEEeecCCCCCccccccccCCCceeEEEEeCCCC
Q 019416 269 LPHQIHKATSLQDLSVSGCPSLMSFPHGGLPPNLISLGIIDCENLIPLSQWELHKLKHLNKYTILGGLP 337 (341)
Q Consensus 269 l~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~i~~~~~L~~l~l~~~C~ 337 (341)
++ .+..+++|+.|++++| .+..++....+++|++|++++|......+. .+..+++|++|++++ |+
T Consensus 258 ~~-~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~-n~ 322 (347)
T 4fmz_A 258 IN-AVKDLTKLKMLNVGSN-QISDISVLNNLSQLNSLFLNNNQLGNEDME-VIGGLTNLTTLFLSQ-NH 322 (347)
T ss_dssp CG-GGTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCCGGGHH-HHHTCTTCSEEECCS-SS
T ss_pred Ch-hHhcCCCcCEEEccCC-ccCCChhhcCCCCCCEEECcCCcCCCcChh-HhhccccCCEEEccC-Cc
Confidence 74 6788999999999886 667665434578999999999865544434 368899999999999 75
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.82 E-value=1.9e-18 Score=168.60 Aligned_cols=146 Identities=13% Similarity=0.017 Sum_probs=85.1
Q ss_pred CCCchhhhhhcccCCC--cc-ccCCCCCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh----hcccCCC
Q 019416 15 APVPKNFLALALFPDE--DK-ILGIRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL----LHRMAYT 87 (341)
Q Consensus 15 ~~~~~~~~~l~~~~~~--~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~ 87 (341)
..+|.....+.+..+. .. ...++.+++|++|++++|......|..+..+++|++|++++| .+... ++. ++
T Consensus 29 ~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~--l~ 105 (606)
T 3t6q_A 29 GTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN-PLIFMAETALSG--PK 105 (606)
T ss_dssp TTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCSEECTTTTSS--CT
T ss_pred CCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC-cccccChhhhcc--cc
Confidence 4455666666665442 11 235777888888888876443333566777888888888874 34333 667 77
Q ss_pred CcceEeeecCCCCcccc--CCCCCCCccEEEEeCCCChH-HHHHHhhhhcc-cccceEeecCCCCccccCCC--CCcccc
Q 019416 88 SLEYLEFSSCLFFSNSK--QDYFPTTLKRLKICDCTNAE-LILKVLMDQKG-LALESLEVDGCSSLFSLPIN--QLPATL 161 (341)
Q Consensus 88 ~L~~L~l~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~-~~L~~L~l~~~~~l~~l~~~--~~~~~L 161 (341)
+|++|++++| .+..++ ....+++|++|++++|.... . .|...+ ++|++|+++++ .++.++.. ..+++|
T Consensus 106 ~L~~L~L~~n-~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L 179 (606)
T 3t6q_A 106 ALKHLFFIQT-GISSIDFIPLHNQKTLESLYLGSNHISSIK----LPKGFPTEKLKVLDFQNN-AIHYLSKEDMSSLQQA 179 (606)
T ss_dssp TCCEEECTTS-CCSCGGGSCCTTCTTCCEEECCSSCCCCCC----CCTTCCCTTCCEEECCSS-CCCEECHHHHHTTTTC
T ss_pred cccEeecccc-CcccCCcchhccCCcccEEECCCCcccccC----cccccCCcccCEEEcccC-cccccChhhhhhhccc
Confidence 8888888775 444442 23346777777777765322 1 233333 67777777663 44443322 234455
Q ss_pred c--eEEeecc
Q 019416 162 R--HLRIVNC 169 (341)
Q Consensus 162 ~--~L~l~~~ 169 (341)
+ +|+++++
T Consensus 180 ~~l~L~l~~n 189 (606)
T 3t6q_A 180 TNLSLNLNGN 189 (606)
T ss_dssp CSEEEECTTC
T ss_pred ceeEEecCCC
Confidence 5 4555543
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.82 E-value=1.5e-18 Score=169.33 Aligned_cols=128 Identities=13% Similarity=0.065 Sum_probs=85.3
Q ss_pred CCCchhhhhhcccCCC--ccc-cCCCCCCCcCeEEcCCCCCCccc-cccccCCCCccEEeccCCCCchhh----hcccCC
Q 019416 15 APVPKNFLALALFPDE--DKI-LGIRTGETLESLEIDNLSSLASF-LRSELAATTVKQLKINKCPDLEVL----LHRMAY 86 (341)
Q Consensus 15 ~~~~~~~~~l~~~~~~--~~~-~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l 86 (341)
..+|..+..+.+..+. ... ..+..+++|++|++++| .++.+ |..+.++++|++|++++| .+..+ ++. +
T Consensus 28 ~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~p~~~~~--l 103 (606)
T 3vq2_A 28 DDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILTGN-PIQSFSPGSFSG--L 103 (606)
T ss_dssp TTSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTC-CCCCCCTTSSTT--C
T ss_pred CCCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCC-cccccCHHHhhchhhcCEeECCCC-cccccChhhcCC--c
Confidence 3455666777665542 122 25778888999999886 44555 556778889999999885 44443 777 8
Q ss_pred CCcceEeeecCCCCccccC--CCCCCCccEEEEeCCCChH-HHHHHhhhhcc--cccceEeecCCCCcccc
Q 019416 87 TSLEYLEFSSCLFFSNSKQ--DYFPTTLKRLKICDCTNAE-LILKVLMDQKG--LALESLEVDGCSSLFSL 152 (341)
Q Consensus 87 ~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~--~~L~~L~l~~~~~l~~l 152 (341)
++|++|++++| .+..++. .+.+++|++|++++|.... . +|..++ ++|++|+++++ .++.+
T Consensus 104 ~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~----lp~~~~~l~~L~~L~Ls~n-~l~~~ 168 (606)
T 3vq2_A 104 TSLENLVAVET-KLASLESFPIGQLITLKKLNVAHNFIHSCK----LPAYFSNLTNLVHVDLSYN-YIQTI 168 (606)
T ss_dssp TTCCEEECTTS-CCCCSSSSCCTTCTTCCEEECCSSCCCCCC----CCGGGGTCTTCCEEECCSS-CCCEE
T ss_pred ccCCEEEccCC-ccccccccccCCCCCCCEEeCCCCccccee----chHhHhhcCCCCEEEccCC-cceec
Confidence 88888888876 5554442 3447888888888876432 3 455555 78888888774 44443
No 11
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.82 E-value=5e-19 Score=163.52 Aligned_cols=268 Identities=17% Similarity=0.145 Sum_probs=128.0
Q ss_pred CCCCCCcCeEEcCCCCCCcccc-ccccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccCC--CC
Q 019416 36 IRTGETLESLEIDNLSSLASFL-RSELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQD--YF 108 (341)
Q Consensus 36 l~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~~--~~ 108 (341)
+..+++|++|+++++. ++.++ ..+..+++|++|++++| .+..+ ++. +++|++|++++| .+..++.. ..
T Consensus 65 ~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~--l~~L~~L~L~~n-~l~~l~~~~~~~ 139 (390)
T 3o6n_A 65 LDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQN--VPLLTVLVLERN-DLSSLPRGIFHN 139 (390)
T ss_dssp HHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTT--CTTCCEEECCSS-CCCCCCTTTTTT
T ss_pred hcccccCcEEECCCCc-ccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcC--CCCCCEEECCCC-ccCcCCHHHhcC
Confidence 3456777777777653 44443 34666777777777764 34333 566 777777777764 55555542 33
Q ss_pred CCCccEEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCCCCCccccceEEeeccCCccccCc-----ceee
Q 019416 109 PTTLKRLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLGE-----SSKI 181 (341)
Q Consensus 109 ~~~L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~-----~l~l 181 (341)
+++|++|++++|..... .+..+. ++|++|+++++ .++.++. ..+++|+.++++++. +..++. .+++
T Consensus 140 l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~l~~L~~L~l~~n~-l~~~~~~~~L~~L~l 212 (390)
T 3o6n_A 140 TPKLTTLSMSNNNLERI----EDDTFQATTSLQNLQLSSN-RLTHVDL-SLIPSLFHANVSYNL-LSTLAIPIAVEELDA 212 (390)
T ss_dssp CTTCCEEECCSSCCCBC----CTTTTSSCTTCCEEECCSS-CCSBCCG-GGCTTCSEEECCSSC-CSEEECCSSCSEEEC
T ss_pred CCCCcEEECCCCccCcc----ChhhccCCCCCCEEECCCC-cCCcccc-ccccccceeeccccc-ccccCCCCcceEEEC
Confidence 67777777777653222 223233 67777777663 4444432 233456666655431 222111 2222
Q ss_pred eCCCCCCcCCCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCcee-cCCCCCCCCcceEec
Q 019416 182 RNCDSVVGPEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESF-PEGGLPNTSLTSLLI 260 (341)
Q Consensus 182 ~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~-~~~~~~~~~L~~L~l 260 (341)
+++.- ..+|...+++|+.|+++++. +... .++..+++|++|+++++. +... +.....+++|++|++
T Consensus 213 ~~n~l----------~~~~~~~~~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L 279 (390)
T 3o6n_A 213 SHNSI----------NVVRGPVNVELTILKLQHNN-LTDT-AWLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYI 279 (390)
T ss_dssp CSSCC----------CEEECCCCSSCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEEC
T ss_pred CCCee----------eeccccccccccEEECCCCC-Cccc-HHHcCCCCccEEECCCCc-CCCcChhHccccccCCEEEC
Confidence 22211 00111122235555555532 2222 234445555555555542 2222 222222345555555
Q ss_pred ccCcccccchhhhccCCCcCeEeecCCCCCccCCCC-CCCCCccEEEeecCCCCCccccccccCCCceeEEEEeC
Q 019416 261 SECENLMSLPHQIHKATSLQDLSVSGCPSLMSFPHG-GLPPNLISLGIIDCENLIPLSQWELHKLKHLNKYTILG 334 (341)
Q Consensus 261 ~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~c~~~~~~~~~~i~~~~~L~~l~l~~ 334 (341)
+++ .++.++.....+++|+.|++++| .+..++.. ...++|++|++.+|.. +.. .+..+++|++|++++
T Consensus 280 ~~n-~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~i-~~~---~~~~~~~L~~L~l~~ 348 (390)
T 3o6n_A 280 SNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNSI-VTL---KLSTHHTLKNLTLSH 348 (390)
T ss_dssp CSS-CCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSCC-CCC---CCCTTCCCSEEECCS
T ss_pred CCC-cCcccCcccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCcc-cee---CchhhccCCEEEcCC
Confidence 553 34444444444555555555543 34333322 1234555555555432 212 124445555555554
No 12
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.81 E-value=1.2e-19 Score=181.74 Aligned_cols=290 Identities=15% Similarity=0.095 Sum_probs=164.3
Q ss_pred CCCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchh-h---hcccCCCCcceEeeecCCCCccccCCCCCCCc
Q 019416 37 RTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEV-L---LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTL 112 (341)
Q Consensus 37 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~-~---~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L 112 (341)
..+++|++|++++|.....+|. +..+++|++|++++|. +.. + +.. +++|++|++++|.....++.. .+++|
T Consensus 197 ~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~-l~~~~~~~l~~--l~~L~~L~Ls~n~l~~~~~~~-~l~~L 271 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNK-LSGDFSRAIST--CTELKLLNISSNQFVGPIPPL-PLKSL 271 (768)
T ss_dssp TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSC-CCSCHHHHTTT--CSSCCEEECCSSCCEESCCCC-CCTTC
T ss_pred ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCc-CCCcccHHHhc--CCCCCEEECCCCcccCccCcc-ccCCC
Confidence 4567777777776544333343 6667777777777743 322 2 666 777777777765433333332 34555
Q ss_pred cEEEEeCCCChHHHHHHhhhhcc---cccceEeecCCCCccccCCC-CCccccceEEeeccCCccccCc----------c
Q 019416 113 KRLKICDCTNAELILKVLMDQKG---LALESLEVDGCSSLFSLPIN-QLPATLRHLRIVNCMNLKSLGE----------S 178 (341)
Q Consensus 113 ~~L~l~~~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~~~~l~~~~~----------~ 178 (341)
++|++++|..... +|..++ ++|++|+++++..-..+|.. ..+++|++|+++++.-...+|. .
T Consensus 272 ~~L~L~~n~l~~~----ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~ 347 (768)
T 3rgz_A 272 QYLSLAENKFTGE----IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 347 (768)
T ss_dssp CEEECCSSEEEES----CCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCE
T ss_pred CEEECcCCccCCc----cCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCE
Confidence 5555555543223 343332 45555555543221122221 2334455555544321111211 2
Q ss_pred eeeeCCCC--------------CCc-CCCccccc-ccccc----cccccceEeeccCcCCCcccccCCCCCCcCeEEeec
Q 019416 179 SKIRNCDS--------------VVG-PEGESSLE-NMTSS----HTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISN 238 (341)
Q Consensus 179 l~l~~~~~--------------l~~-~~~~~~~~-~l~~~----~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~ 238 (341)
++++++.. ++. ......+. ..|.. .+++|+.|++++|.....+|..+..+++|+.|++++
T Consensus 348 L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 427 (768)
T 3rgz_A 348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 427 (768)
T ss_dssp EECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCS
T ss_pred EeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcC
Confidence 22222211 110 00000000 00100 134578888887765556777888888888888888
Q ss_pred CCCCceecCCCCCCCCcceEecccCcccccchhhhccCCCcCeEeecCCCCCccCCCC-CCCCCccEEEeecCCCCCccc
Q 019416 239 CPSLESFPEGGLPNTSLTSLLISECENLMSLPHQIHKATSLQDLSVSGCPSLMSFPHG-GLPPNLISLGIIDCENLIPLS 317 (341)
Q Consensus 239 c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~c~~~~~~~ 317 (341)
|.-....|.....+++|++|+++++.-...+|..+..+++|++|++++|.-...++.. ...++|++|++++|......+
T Consensus 428 N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 507 (768)
T 3rgz_A 428 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 507 (768)
T ss_dssp SEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred CcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCC
Confidence 6432334443334568999999987543467888888999999999886433345543 346889999999987665667
Q ss_pred cccccCCCceeEEEEeCCCC
Q 019416 318 QWELHKLKHLNKYTILGGLP 337 (341)
Q Consensus 318 ~~~i~~~~~L~~l~l~~~C~ 337 (341)
.| +..+++|++|++++ |.
T Consensus 508 ~~-~~~l~~L~~L~L~~-N~ 525 (768)
T 3rgz_A 508 KW-IGRLENLAILKLSN-NS 525 (768)
T ss_dssp GG-GGGCTTCCEEECCS-SC
T ss_pred hH-HhcCCCCCEEECCC-Cc
Confidence 65 78899999999998 63
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.81 E-value=6.7e-19 Score=172.77 Aligned_cols=220 Identities=13% Similarity=0.180 Sum_probs=133.3
Q ss_pred ccccccccCCCCccEEeccCCCCchh------------------h---hc--ccCCCCcceEeeecCCCCccccC-CCCC
Q 019416 54 ASFLRSELAATTVKQLKINKCPDLEV------------------L---LH--RMAYTSLEYLEFSSCLFFSNSKQ-DYFP 109 (341)
Q Consensus 54 ~~~~~~~~~l~~L~~L~l~~~~~l~~------------------~---~~--~~~l~~L~~L~l~~~~~l~~~~~-~~~~ 109 (341)
+.+|.+++.+++|++|+++++. +.. + ++ . +++|++|++++|.....+|. .+.+
T Consensus 196 ~~ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~--l~~L~~L~L~~n~l~~~~p~~l~~l 272 (636)
T 4eco_A 196 TFVSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDN--LKDLTDVEVYNCPNLTKLPTFLKAL 272 (636)
T ss_dssp EEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGG--CTTCCEEEEECCTTCSSCCTTTTTC
T ss_pred ccCCHHHhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcc--cCCCCEEEecCCcCCccChHHHhcC
Confidence 3467778889999999999954 555 5 55 8 99999999999876777775 4558
Q ss_pred CCccEEEEeCCC-ChH-HHHHHhhhhcc--------cccceEeecCCCCccccCC--C-CCccccceEEeeccCCcc-cc
Q 019416 110 TTLKRLKICDCT-NAE-LILKVLMDQKG--------LALESLEVDGCSSLFSLPI--N-QLPATLRHLRIVNCMNLK-SL 175 (341)
Q Consensus 110 ~~L~~L~l~~~~-~~~-~~~~~~~~~~~--------~~L~~L~l~~~~~l~~l~~--~-~~~~~L~~L~l~~~~~l~-~~ 175 (341)
++|++|++++|. ... . +|..++ ++|++|+++++ .++.+|. . ..+++|+.|+++++. +. .+
T Consensus 273 ~~L~~L~Ls~n~~l~~~~----lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l~~l~~L~~L~L~~N~-l~g~i 346 (636)
T 4eco_A 273 PEMQLINVACNRGISGEQ----LKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYNQ-LEGKL 346 (636)
T ss_dssp SSCCEEECTTCTTSCHHH----HHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHHHTTCTTCCEEECCSCC-CEEEC
T ss_pred CCCCEEECcCCCCCcccc----chHHHHhhhccccCCCCCEEECCCC-cCCccCchhhhccCCCCCEEeCcCCc-Cccch
Confidence 999999999997 333 4 555443 78999999885 5667776 3 567889999998764 33 55
Q ss_pred Cc--------ceeeeCCCCCCcCCCcccccccccc--cccc-cceEeeccCcCCCcccccCCCCC--CcCeEEeecCCCC
Q 019416 176 GE--------SSKIRNCDSVVGPEGESSLENMTSS--HTLE-LRELEIWDCLELEFLPEDMHNFT--DLNLLSISNCPSL 242 (341)
Q Consensus 176 ~~--------~l~l~~~~~l~~~~~~~~~~~l~~~--~~~~-L~~L~l~~~~~l~~l~~~~~~l~--~L~~L~l~~c~~l 242 (341)
|. .++++++. +..+|.. .+++ |+.|+++++. +..+|..+..++ +|+.|++++|.-.
T Consensus 347 p~~~~l~~L~~L~L~~N~----------l~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~ 415 (636)
T 4eco_A 347 PAFGSEIKLASLNLAYNQ----------ITEIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIG 415 (636)
T ss_dssp CCCEEEEEESEEECCSSE----------EEECCTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSSCTT
T ss_pred hhhCCCCCCCEEECCCCc----------cccccHhhhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcCCcCC
Confidence 42 22332221 1112211 3445 7777777654 346666555433 6666666665322
Q ss_pred ceecCCC-------CCCCCcceEecccCcccccchhh-hccCCCcCeEeecCCCCCccCCC
Q 019416 243 ESFPEGG-------LPNTSLTSLLISECENLMSLPHQ-IHKATSLQDLSVSGCPSLMSFPH 295 (341)
Q Consensus 243 ~~~~~~~-------~~~~~L~~L~l~~~~~l~~l~~~-l~~l~~L~~L~l~~c~~l~~~~~ 295 (341)
...|... +..++|++|+++++ .++.+|.. +..+++|++|+++++ .+..++.
T Consensus 416 ~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N-~l~~i~~ 474 (636)
T 4eco_A 416 SVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGN-MLTEIPK 474 (636)
T ss_dssp TTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSS-CCSBCCS
T ss_pred CcchhhhcccccccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCC-CCCCcCH
Confidence 2222111 12235666666553 34455443 233555555555543 3344443
No 14
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.81 E-value=9.8e-18 Score=151.30 Aligned_cols=256 Identities=12% Similarity=0.120 Sum_probs=181.8
Q ss_pred CCCcCeEEcCCCCCCccccc-cccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccCCCCCCCcc
Q 019416 39 GETLESLEIDNLSSLASFLR-SELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLK 113 (341)
Q Consensus 39 ~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~ 113 (341)
.+++++|+++++ .++.++. .+..+++|++|++++| .+..+ +.. +++|++|+++++ .+..++... +++|+
T Consensus 51 ~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~--l~~L~~L~Ls~n-~l~~l~~~~-~~~L~ 124 (330)
T 1xku_A 51 PPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAP--LVKLERLYLSKN-QLKELPEKM-PKTLQ 124 (330)
T ss_dssp CTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTT--CTTCCEEECCSS-CCSBCCSSC-CTTCC
T ss_pred CCCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcC--CCCCCEEECCCC-cCCccChhh-ccccc
Confidence 467899999986 4556554 5778899999999884 44443 777 889999999875 566666533 48899
Q ss_pred EEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccc--cCCC--CCccccceEEeeccCCccccCcceeeeCCCCC
Q 019416 114 RLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFS--LPIN--QLPATLRHLRIVNCMNLKSLGESSKIRNCDSV 187 (341)
Q Consensus 114 ~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~--l~~~--~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l 187 (341)
+|++++|..... .+..+. ++|++|+++++ .++. .... ..+++|+.|+++++. +..+|.
T Consensus 125 ~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~---------- 188 (330)
T 1xku_A 125 ELRVHENEITKV----RKSVFNGLNQMIVVELGTN-PLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQ---------- 188 (330)
T ss_dssp EEECCSSCCCBB----CHHHHTTCTTCCEEECCSS-CCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCS----------
T ss_pred EEECCCCccccc----CHhHhcCCccccEEECCCC-cCCccCcChhhccCCCCcCEEECCCCc-cccCCc----------
Confidence 999998863322 222233 88999999874 4432 2221 446788888888753 443332
Q ss_pred CcCCCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCC-CCCCCCcceEecccCccc
Q 019416 188 VGPEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEG-GLPNTSLTSLLISECENL 266 (341)
Q Consensus 188 ~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~L~l~~~~~l 266 (341)
...++|+.|+++++......+..+..+++|+.|+++++. +..++.. ...+++|++|+++++ .+
T Consensus 189 --------------~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l 252 (330)
T 1xku_A 189 --------------GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNN-KL 252 (330)
T ss_dssp --------------SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC-CCEECTTTGGGSTTCCEEECCSS-CC
T ss_pred --------------cccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CceeChhhccCCCCCCEEECCCC-cC
Confidence 112359999999975433346788899999999999964 5555543 334579999999996 68
Q ss_pred ccchhhhccCCCcCeEeecCCCCCccCCCCCC--------CCCccEEEeecCCCCC--ccccccccCCCceeEEEEeC
Q 019416 267 MSLPHQIHKATSLQDLSVSGCPSLMSFPHGGL--------PPNLISLGIIDCENLI--PLSQWELHKLKHLNKYTILG 334 (341)
Q Consensus 267 ~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~~~--------~~~L~~L~l~~c~~~~--~~~~~~i~~~~~L~~l~l~~ 334 (341)
+.+|..+..+++|++|+++++ .++.++...+ .++++.+++.+++... ..+. .+..+++++.+++++
T Consensus 253 ~~lp~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~-~f~~~~~l~~l~L~~ 328 (330)
T 1xku_A 253 VKVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPS-TFRCVYVRAAVQLGN 328 (330)
T ss_dssp SSCCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGG-GGTTCCCGGGEEC--
T ss_pred ccCChhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCcccccccCcc-ccccccceeEEEecc
Confidence 899999999999999999885 6777766533 3678999999987543 2222 468899999999987
No 15
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.80 E-value=3.9e-18 Score=154.10 Aligned_cols=257 Identities=12% Similarity=0.107 Sum_probs=167.4
Q ss_pred CCCcCeEEcCCCCCCccc-cccccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccCCCCCCCcc
Q 019416 39 GETLESLEIDNLSSLASF-LRSELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLK 113 (341)
Q Consensus 39 ~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~ 113 (341)
.++|++|+++++. ++.+ +..+..+++|++|++++| .+..+ +.. +++|++|+++++ .+..++.... ++|+
T Consensus 53 ~~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~--l~~L~~L~L~~n-~l~~l~~~~~-~~L~ 126 (332)
T 2ft3_A 53 SPDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSP--LRKLQKLYISKN-HLVEIPPNLP-SSLV 126 (332)
T ss_dssp CTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTT--CTTCCEEECCSS-CCCSCCSSCC-TTCC
T ss_pred CCCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhC--cCCCCEEECCCC-cCCccCcccc-ccCC
Confidence 3567777777653 4444 335666777777777774 34333 666 777777777764 5555654333 6777
Q ss_pred EEEEeCCCChHHHHHHhhhh-cc--cccceEeecCCCCccc--cCCC--CCccccceEEeeccCCccccCcceeeeCCCC
Q 019416 114 RLKICDCTNAELILKVLMDQ-KG--LALESLEVDGCSSLFS--LPIN--QLPATLRHLRIVNCMNLKSLGESSKIRNCDS 186 (341)
Q Consensus 114 ~L~l~~~~~~~~~~~~~~~~-~~--~~L~~L~l~~~~~l~~--l~~~--~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~ 186 (341)
+|++++|.. .. ++.. +. ++|+.|+++++ .++. .... ..+ +|+.|+++++. +..+|.
T Consensus 127 ~L~l~~n~i-~~----~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~--------- 189 (332)
T 2ft3_A 127 ELRIHDNRI-RK----VPKGVFSGLRNMNCIEMGGN-PLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPK--------- 189 (332)
T ss_dssp EEECCSSCC-CC----CCSGGGSSCSSCCEEECCSC-CCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCS---------
T ss_pred EEECCCCcc-Cc----cCHhHhCCCccCCEEECCCC-ccccCCCCcccccCC-ccCEEECcCCC-CCccCc---------
Confidence 777777653 33 3332 22 77777777764 3332 1111 222 66667666542 333322
Q ss_pred CCcCCCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCC-CCCCCCcceEecccCcc
Q 019416 187 VVGPEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEG-GLPNTSLTSLLISECEN 265 (341)
Q Consensus 187 l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~L~l~~~~~ 265 (341)
...++|+.|+++++......+..+..+++|+.|+++++. +..++.. ...+++|++|+++++ .
T Consensus 190 ---------------~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N-~ 252 (332)
T 2ft3_A 190 ---------------DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ-IRMIENGSLSFLPTLRELHLDNN-K 252 (332)
T ss_dssp ---------------SSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC-CCCCCTTGGGGCTTCCEEECCSS-C
T ss_pred ---------------cccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CCcCChhHhhCCCCCCEEECCCC-c
Confidence 122359999999865434445788899999999999964 5555542 233579999999996 6
Q ss_pred cccchhhhccCCCcCeEeecCCCCCccCCCCCC--------CCCccEEEeecCCCCC-ccccccccCCCceeEEEEeCCC
Q 019416 266 LMSLPHQIHKATSLQDLSVSGCPSLMSFPHGGL--------PPNLISLGIIDCENLI-PLSQWELHKLKHLNKYTILGGL 336 (341)
Q Consensus 266 l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~~~--------~~~L~~L~l~~c~~~~-~~~~~~i~~~~~L~~l~l~~~C 336 (341)
++.+|..+..+++|+.|+++++ .++.++...+ .++|+.+++.+++... ......+..+++|+.+++++ +
T Consensus 253 l~~lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~-n 330 (332)
T 2ft3_A 253 LSRVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGN-Y 330 (332)
T ss_dssp CCBCCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CeecChhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccc-c
Confidence 8899999999999999999984 6777765432 3579999999987552 22222478899999999988 6
Q ss_pred C
Q 019416 337 P 337 (341)
Q Consensus 337 ~ 337 (341)
.
T Consensus 331 ~ 331 (332)
T 2ft3_A 331 K 331 (332)
T ss_dssp -
T ss_pred c
Confidence 4
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.80 E-value=3.7e-18 Score=164.52 Aligned_cols=120 Identities=16% Similarity=0.177 Sum_probs=69.5
Q ss_pred CchhhhhhcccCCC--c-cccCCCCCCCcCeEEcCCCCCCccc-cccccCCCCccEEeccCCCCchhh----hcccCCCC
Q 019416 17 VPKNFLALALFPDE--D-KILGIRTGETLESLEIDNLSSLASF-LRSELAATTVKQLKINKCPDLEVL----LHRMAYTS 88 (341)
Q Consensus 17 ~~~~~~~l~~~~~~--~-~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~ 88 (341)
++..+..+.+..+. . ....+..+++|++|++++|. ++.+ |..+..+++|++|++++| .+... ++. +++
T Consensus 24 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~--l~~ 99 (549)
T 2z81_A 24 LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR-INTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGP--LSS 99 (549)
T ss_dssp CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHTT--CTT
T ss_pred CCCCccEEECcCCccCccChhhhhcCCcccEEECCCCC-cCccChhhccccccCCEEECCCC-ccCccCHHHhcc--CCC
Confidence 34556666665442 1 12356778888888888763 4444 345677788888888874 44333 666 777
Q ss_pred cceEeeecCCCCccc---cCCCCCCCccEEEEeCCCChHHHHHHhhh-hcc--cccceEeecC
Q 019416 89 LEYLEFSSCLFFSNS---KQDYFPTTLKRLKICDCTNAELILKVLMD-QKG--LALESLEVDG 145 (341)
Q Consensus 89 L~~L~l~~~~~l~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~--~~L~~L~l~~ 145 (341)
|++|++++| .+..+ +....+++|++|++++|..+.. +|. .+. ++|++|++++
T Consensus 100 L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~----~~~~~~~~l~~L~~L~L~~ 157 (549)
T 2z81_A 100 LKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSE----IRRIDFAGLTSLNELEIKA 157 (549)
T ss_dssp CCEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCE----ECTTTTTTCCEEEEEEEEE
T ss_pred CcEEECCCC-cccccchhhhhhccCCccEEECCCCccccc----cCHhhhhcccccCeeeccC
Confidence 777777765 33322 1233466777777776653333 331 222 5555555554
No 17
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.80 E-value=2.2e-18 Score=168.02 Aligned_cols=265 Identities=15% Similarity=0.083 Sum_probs=172.3
Q ss_pred CCCCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccC--CCCC
Q 019416 36 IRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQ--DYFP 109 (341)
Q Consensus 36 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~ 109 (341)
+..+++|++|++++| .++.+|..+..+++|++|++++| .+... +.. +++|++|++++|.....++. ...+
T Consensus 274 ~~~l~~L~~L~l~~n-~l~~lp~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~--l~~L~~L~l~~n~~~~~~~~~~~~~l 349 (606)
T 3t6q_A 274 FHCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSAN-KFENLCQISASN--FPSLTHLSIKGNTKRLELGTGCLENL 349 (606)
T ss_dssp TTTCTTCSEEECTTS-CCSCCCSSCCSCTTCCEEECTTC-CCSBGGGGCGGG--CTTCSEEECCSCSSCCBCCSSTTTTC
T ss_pred hccccCCCEEeccCC-ccCCCChhhcccccCCEEECccC-CcCcCchhhhhc--cCcCCEEECCCCCcccccchhhhhcc
Confidence 677888999999886 56677877888889999999885 44333 777 88899999988754445544 3447
Q ss_pred CCccEEEEeCCCChHHHHHHh--hhhcc--cccceEeecCCCCccccCCC--CCccccceEEeeccCCccccCcceeeeC
Q 019416 110 TTLKRLKICDCTNAELILKVL--MDQKG--LALESLEVDGCSSLFSLPIN--QLPATLRHLRIVNCMNLKSLGESSKIRN 183 (341)
Q Consensus 110 ~~L~~L~l~~~~~~~~~~~~~--~~~~~--~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~l~l~~ 183 (341)
++|++|++++|..... . +..+. ++|++|+++++ .+..++.. ..+++|+.|+++++.--...+.
T Consensus 350 ~~L~~L~l~~n~l~~~----~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------ 418 (606)
T 3t6q_A 350 ENLRELDLSHDDIETS----DCCNLQLRNLSHLQSLNLSYN-EPLSLKTEAFKECPQLELLDLAFTRLKVKDAQ------ 418 (606)
T ss_dssp TTCCEEECCSSCCCEE----EESTTTTTTCTTCCEEECCSC-SCEEECTTTTTTCTTCSEEECTTCCEECCTTC------
T ss_pred CcCCEEECCCCccccc----cCcchhcccCCCCCEEECCCC-cCCcCCHHHhcCCccCCeEECCCCcCCCcccc------
Confidence 8889999888763321 1 23333 88888888875 45444332 4567888888877532111110
Q ss_pred CCCCCcCCCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCc-eecC--CCCCCCCcceEec
Q 019416 184 CDSVVGPEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLE-SFPE--GGLPNTSLTSLLI 260 (341)
Q Consensus 184 ~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~-~~~~--~~~~~~~L~~L~l 260 (341)
. . + ..+++|+.|+++++......|..+..+++|++|++++|.-.. .++. ....+++|++|++
T Consensus 419 --------~--~---~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L 483 (606)
T 3t6q_A 419 --------S--P---F--QNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL 483 (606)
T ss_dssp --------C--T---T--TTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEEC
T ss_pred --------h--h---h--hCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEEC
Confidence 0 0 1 133468888888875545556777778888888888764322 1221 1223468888888
Q ss_pred ccCcccccc-hhhhccCCCcCeEeecCCCCCccCCCC--CCCCCccEEEeecCCCCCccccccccCCCceeEEEEeC
Q 019416 261 SECENLMSL-PHQIHKATSLQDLSVSGCPSLMSFPHG--GLPPNLISLGIIDCENLIPLSQWELHKLKHLNKYTILG 334 (341)
Q Consensus 261 ~~~~~l~~l-~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~c~~~~~~~~~~i~~~~~L~~l~l~~ 334 (341)
++|. ++.+ |..+..+++|+.|+++++ .+...... ...++| .|++++|......+. .+..+++|+++++++
T Consensus 484 s~n~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~-~~~~l~~L~~L~l~~ 556 (606)
T 3t6q_A 484 SFCD-LSSIDQHAFTSLKMMNHVDLSHN-RLTSSSIEALSHLKGI-YLNLASNHISIILPS-LLPILSQQRTINLRQ 556 (606)
T ss_dssp TTSC-CCEECTTTTTTCTTCCEEECCSS-CCCGGGGGGGTTCCSC-EEECCSSCCCCCCGG-GHHHHHTSSEEECTT
T ss_pred CCCc-cCccChhhhccccCCCEEECCCC-ccCcCChhHhCccccc-EEECcCCcccccCHh-hcccCCCCCEEeCCC
Confidence 8864 5555 556778888888888875 44444322 335677 888877754443333 356778888888887
No 18
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.80 E-value=4.9e-18 Score=164.27 Aligned_cols=108 Identities=19% Similarity=0.176 Sum_probs=71.8
Q ss_pred cCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccc--cchhhhccCCCcCeEeecCCCCCccCCCC--CCC
Q 019416 224 DMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLM--SLPHQIHKATSLQDLSVSGCPSLMSFPHG--GLP 299 (341)
Q Consensus 224 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~--~l~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~ 299 (341)
.+..+++|+.|++++|.-....+.....+++|++|++++|. +. .+|..+..+++|+.|++++| .+..+... ...
T Consensus 416 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l 493 (570)
T 2z63_A 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSL 493 (570)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTC
T ss_pred hhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCc-CccccchhhhhcccCCCEEECCCC-ccccCChhhhhcc
Confidence 45566777777777764222233333335688888888864 43 47777888888899988876 45555332 346
Q ss_pred CCccEEEeecCCCCCccccccccCCCceeEEEEeC
Q 019416 300 PNLISLGIIDCENLIPLSQWELHKLKHLNKYTILG 334 (341)
Q Consensus 300 ~~L~~L~l~~c~~~~~~~~~~i~~~~~L~~l~l~~ 334 (341)
++|++|++++|. ++..+...+..+++|+++++++
T Consensus 494 ~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~ 527 (570)
T 2z63_A 494 SSLQVLNMASNQ-LKSVPDGIFDRLTSLQKIWLHT 527 (570)
T ss_dssp TTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCS
T ss_pred cCCCEEeCCCCc-CCCCCHHHhhcccCCcEEEecC
Confidence 789999998874 4433322468888999999888
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.80 E-value=1.7e-18 Score=168.75 Aligned_cols=123 Identities=15% Similarity=0.164 Sum_probs=75.3
Q ss_pred CCCCCCcCeEEcCCCCCCcccc-ccccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccCC--CC
Q 019416 36 IRTGETLESLEIDNLSSLASFL-RSELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQD--YF 108 (341)
Q Consensus 36 l~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~~--~~ 108 (341)
+..+++|++|++++|. ++.++ ..+..+++|++|++++| .+..+ ++. +++|++|++++| .+..++.. ..
T Consensus 71 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~--l~~L~~L~L~~n-~l~~l~~~~~~~ 145 (597)
T 3oja_B 71 LDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQN--VPLLTVLVLERN-DLSSLPRGIFHN 145 (597)
T ss_dssp HHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTT--CTTCCEEECCSS-CCCCCCTTTTTT
T ss_pred HccCCCCcEEECCCCC-CCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcC--CCCCCEEEeeCC-CCCCCCHHHhcc
Confidence 3456777788887753 44443 35667777888888774 34443 566 777888888775 55555542 34
Q ss_pred CCCccEEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCCCCCccccceEEeecc
Q 019416 109 PTTLKRLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPINQLPATLRHLRIVNC 169 (341)
Q Consensus 109 ~~~L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~ 169 (341)
+++|++|++++|..... .|..+. ++|++|+++++ .++.++. ..+++|+.|+++++
T Consensus 146 l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~l~~L~~L~l~~n 202 (597)
T 3oja_B 146 TPKLTTLSMSNNNLERI----EDDTFQATTSLQNLQLSSN-RLTHVDL-SLIPSLFHANVSYN 202 (597)
T ss_dssp CTTCCEEECCSSCCCBC----CTTTTTTCTTCCEEECTTS-CCSBCCG-GGCTTCSEEECCSS
T ss_pred CCCCCEEEeeCCcCCCC----ChhhhhcCCcCcEEECcCC-CCCCcCh-hhhhhhhhhhcccC
Confidence 67778888777753332 333333 77777777763 4555432 33456666666553
No 20
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.80 E-value=1.3e-18 Score=156.95 Aligned_cols=225 Identities=23% Similarity=0.374 Sum_probs=132.7
Q ss_pred CCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh---hcccCCCCcceEeeecCCCCccccC-CCCCCCccE
Q 019416 39 GETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL---LHRMAYTSLEYLEFSSCLFFSNSKQ-DYFPTTLKR 114 (341)
Q Consensus 39 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~---~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~ 114 (341)
.+++++|+++++ .++.+|..+..+++|++|+++++ .+..+ ++. +++|++|++++| .+..+|. ...+++|++
T Consensus 80 ~~~l~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~n-~l~~lp~~~~~--l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~ 154 (328)
T 4fcg_A 80 QPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAA-GLMELPDTMQQ--FAGLETLTLARN-PLRALPASIASLNRLRE 154 (328)
T ss_dssp STTCCEEEEESS-CCSSCCSCGGGGTTCSEEEEESS-CCCCCCSCGGG--GTTCSEEEEESC-CCCCCCGGGGGCTTCCE
T ss_pred ccceeEEEccCC-CchhcChhhhhCCCCCEEECCCC-CccchhHHHhc--cCCCCEEECCCC-ccccCcHHHhcCcCCCE
Confidence 477888888875 55677777777888888888884 44444 677 888888888875 4556653 344778888
Q ss_pred EEEeCCCChHHHHHHhhhhcccccceEeecCCCCccccCCCCCccccceEEeeccCCccccCcceeeeCCCCCCcCCCcc
Q 019416 115 LKICDCTNAELILKVLMDQKGLALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVGPEGES 194 (341)
Q Consensus 115 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~~~~~~ 194 (341)
|++++|..+.. +|..++ ...+.+ . ...+++|+.|+++++ .++.+|..+
T Consensus 155 L~L~~n~~~~~----~p~~~~----~~~~~~--~------~~~l~~L~~L~L~~n-~l~~lp~~l--------------- 202 (328)
T 4fcg_A 155 LSIRACPELTE----LPEPLA----STDASG--E------HQGLVNLQSLRLEWT-GIRSLPASI--------------- 202 (328)
T ss_dssp EEEEEETTCCC----CCSCSE----EEC-CC--C------EEESTTCCEEEEEEE-CCCCCCGGG---------------
T ss_pred EECCCCCCccc----cChhHh----hccchh--h------hccCCCCCEEECcCC-CcCcchHhh---------------
Confidence 88888765555 554331 111100 0 012345666666554 233332210
Q ss_pred cccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccchhhhc
Q 019416 195 SLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQIH 274 (341)
Q Consensus 195 ~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l~ 274 (341)
. .+++|+.|+++++ .+..+|..+..+++|+.|++++|.....+|.....+++|++|++++|+..+.+|..+.
T Consensus 203 --~-----~l~~L~~L~L~~N-~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~ 274 (328)
T 4fcg_A 203 --A-----NLQNLKSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIH 274 (328)
T ss_dssp --G-----GCTTCCEEEEESS-CCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGG
T ss_pred --c-----CCCCCCEEEccCC-CCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhh
Confidence 0 2234666666664 3344555566666666666666655555555444445666666666655556666666
Q ss_pred cCCCcCeEeecCCCCCccCCCC-CCCCCccEEEee
Q 019416 275 KATSLQDLSVSGCPSLMSFPHG-GLPPNLISLGII 308 (341)
Q Consensus 275 ~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~ 308 (341)
.+++|++|++++|+....+|.. +..++|+.+++.
T Consensus 275 ~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 275 RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp GCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred cCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence 6666666666666666666554 334555655554
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.79 E-value=2e-18 Score=173.47 Aligned_cols=130 Identities=12% Similarity=0.022 Sum_probs=91.5
Q ss_pred ccccCCCCCCCcCeEEcCCCCCCcc--ccccccC-------CCCccEEeccCCCCchhh-----hcccCCCCcceEeeec
Q 019416 31 DKILGIRTGETLESLEIDNLSSLAS--FLRSELA-------ATTVKQLKINKCPDLEVL-----LHRMAYTSLEYLEFSS 96 (341)
Q Consensus 31 ~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~-------l~~L~~L~l~~~~~l~~~-----~~~~~l~~L~~L~l~~ 96 (341)
..+..++.+++|++|++++|..++. +|..+.. +++|+.|++++| .+..+ +.. +++|+.|++++
T Consensus 506 ~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~l~~--L~~L~~L~Ls~ 582 (876)
T 4ecn_A 506 QLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASASLQK--MVKLGLLDCVH 582 (876)
T ss_dssp SCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBCCCHHHHTT--CTTCCEEECTT
T ss_pred cChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCccCChhhhhc--CCCCCEEECCC
Confidence 4455678899999999998763553 6655444 459999999985 34333 667 88999999988
Q ss_pred CCCCccccCCCCCCCccEEEEeCCCChHHHHHHhhhhcc--cc-cceEeecCCCCccccCCC-CCc--cccceEEeeccC
Q 019416 97 CLFFSNSKQDYFPTTLKRLKICDCTNAELILKVLMDQKG--LA-LESLEVDGCSSLFSLPIN-QLP--ATLRHLRIVNCM 170 (341)
Q Consensus 97 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~~-L~~L~l~~~~~l~~l~~~-~~~--~~L~~L~l~~~~ 170 (341)
| .+..+|..+.+++|+.|++++|... . +|..+. ++ |+.|+++++ .++.+|.. ... ++|+.|+++++.
T Consensus 583 N-~l~~lp~~~~L~~L~~L~Ls~N~l~-~----lp~~l~~l~~~L~~L~Ls~N-~L~~lp~~~~~~~~~~L~~L~Ls~N~ 655 (876)
T 4ecn_A 583 N-KVRHLEAFGTNVKLTDLKLDYNQIE-E----IPEDFCAFTDQVEGLGFSHN-KLKYIPNIFNAKSVYVMGSVDFSYNK 655 (876)
T ss_dssp S-CCCBCCCCCTTSEESEEECCSSCCS-C----CCTTSCEECTTCCEEECCSS-CCCSCCSCCCTTCSSCEEEEECCSSC
T ss_pred C-CcccchhhcCCCcceEEECcCCccc-c----chHHHhhccccCCEEECcCC-CCCcCchhhhccccCCCCEEECcCCc
Confidence 6 4557776666888999999888643 5 776666 66 888888874 46566643 222 347777777653
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.79 E-value=3.6e-18 Score=160.77 Aligned_cols=282 Identities=14% Similarity=0.045 Sum_probs=181.8
Q ss_pred CCcCeEEcCCCCCCccc-cccccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccc-cC-CCCCCCc
Q 019416 40 ETLESLEIDNLSSLASF-LRSELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNS-KQ-DYFPTTL 112 (341)
Q Consensus 40 ~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~-~~-~~~~~~L 112 (341)
++|++|+++++. ++.+ |..+..+++|++|++++|.....+ +.. +++|++|++++| .+..+ +. ...+++|
T Consensus 30 ~~l~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~--l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L 105 (455)
T 3v47_A 30 AHVNYVDLSLNS-IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRG--LSSLIILKLDYN-QFLQLETGAFNGLANL 105 (455)
T ss_dssp TTCCEEECCSSC-CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTT--CTTCCEEECTTC-TTCEECTTTTTTCTTC
T ss_pred CccCEEEecCCc-cCcCChhHhccCccccEEECcCCcccceECcccccc--cccCCEEeCCCC-ccCccChhhccCcccC
Confidence 789999999874 4555 667889999999999996432232 788 999999999987 44444 32 4558999
Q ss_pred cEEEEeCCCChHHHHHHhhhh--cc--cccceEeecCCCCccccCC---CCCccccceEEeeccCCcccc-Cc-------
Q 019416 113 KRLKICDCTNAELILKVLMDQ--KG--LALESLEVDGCSSLFSLPI---NQLPATLRHLRIVNCMNLKSL-GE------- 177 (341)
Q Consensus 113 ~~L~l~~~~~~~~~~~~~~~~--~~--~~L~~L~l~~~~~l~~l~~---~~~~~~L~~L~l~~~~~l~~~-~~------- 177 (341)
++|++++|..... .+.. +. ++|++|+++++ .++.+.. ...+++|+.|+++++. +..+ +.
T Consensus 106 ~~L~L~~n~l~~~----~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~ 179 (455)
T 3v47_A 106 EVLTLTQCNLDGA----VLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFNK-VKSICEEDLLNFQG 179 (455)
T ss_dssp CEEECTTSCCBTH----HHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTCC-BSCCCTTTSGGGTT
T ss_pred CEEeCCCCCCCcc----ccCcccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCCc-ccccChhhhhcccc
Confidence 9999999986544 4443 33 89999999985 5655533 2457899999998864 2222 11
Q ss_pred ----ceeeeCCCCCCcCCCcccccccc-cccccccceEeeccCcCCCccccc----------------------------
Q 019416 178 ----SSKIRNCDSVVGPEGESSLENMT-SSHTLELRELEIWDCLELEFLPED---------------------------- 224 (341)
Q Consensus 178 ----~l~l~~~~~l~~~~~~~~~~~l~-~~~~~~L~~L~l~~~~~l~~l~~~---------------------------- 224 (341)
.+.++++.....+....+....+ ...+++|+.|+++++......|..
T Consensus 180 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 259 (455)
T 3v47_A 180 KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT 259 (455)
T ss_dssp CEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCC
T ss_pred ccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchh
Confidence 22333322111100000000000 001234677777665322211111
Q ss_pred ---------CC--CCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccc-hhhhccCCCcCeEeecCCCCCcc
Q 019416 225 ---------MH--NFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSL-PHQIHKATSLQDLSVSGCPSLMS 292 (341)
Q Consensus 225 ---------~~--~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~l~~l~~L~~L~l~~c~~l~~ 292 (341)
+. ..++|+.|+++++.-....+.....+++|++|+++++ .++.+ +..+..+++|++|++++| .+..
T Consensus 260 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~ 337 (455)
T 3v47_A 260 NFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN-EINKIDDNAFWGLTHLLKLNLSQN-FLGS 337 (455)
T ss_dssp SSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCCE
T ss_pred hhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCC-cccccChhHhcCcccCCEEECCCC-ccCC
Confidence 11 1257888888886533333443444579999999986 46665 557888999999999885 5666
Q ss_pred CCCC--CCCCCccEEEeecCCCCCccccccccCCCceeEEEEeC
Q 019416 293 FPHG--GLPPNLISLGIIDCENLIPLSQWELHKLKHLNKYTILG 334 (341)
Q Consensus 293 ~~~~--~~~~~L~~L~l~~c~~~~~~~~~~i~~~~~L~~l~l~~ 334 (341)
++.. ...++|++|++++|......+. .+..+++|++|++++
T Consensus 338 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~ 380 (455)
T 3v47_A 338 IDSRMFENLDKLEVLDLSYNHIRALGDQ-SFLGLPNLKELALDT 380 (455)
T ss_dssp ECGGGGTTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCS
T ss_pred cChhHhcCcccCCEEECCCCcccccChh-hccccccccEEECCC
Confidence 6433 3468999999999855443344 368899999999998
No 23
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.79 E-value=8.7e-18 Score=163.85 Aligned_cols=108 Identities=22% Similarity=0.174 Sum_probs=50.2
Q ss_pred cCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCccccc--chhhhccCCCcCeEeecCCCCCccCCCC--CCC
Q 019416 224 DMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMS--LPHQIHKATSLQDLSVSGCPSLMSFPHG--GLP 299 (341)
Q Consensus 224 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~--l~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~ 299 (341)
.+..+++|+.|++++|.-....+.....+++|++|+++++. +.. +|..+..+++|+.|++++| .+..++.. ...
T Consensus 419 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l 496 (606)
T 3vq2_A 419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS-FKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGVFDTL 496 (606)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTC
T ss_pred hhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCc-CCCcchHHhhccCCCCCEEECCCC-cCCccChhhhccc
Confidence 34444555555555543222222222223456666665543 332 3445555666666666554 33333222 224
Q ss_pred CCccEEEeecCCCCCccccccccCCCceeEEEEeC
Q 019416 300 PNLISLGIIDCENLIPLSQWELHKLKHLNKYTILG 334 (341)
Q Consensus 300 ~~L~~L~l~~c~~~~~~~~~~i~~~~~L~~l~l~~ 334 (341)
++|++|++++|......+. .+..+++|++|++++
T Consensus 497 ~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~l~~ 530 (606)
T 3vq2_A 497 HRLQLLNMSHNNLLFLDSS-HYNQLYSLSTLDCSF 530 (606)
T ss_dssp TTCCEEECCSSCCSCEEGG-GTTTCTTCCEEECTT
T ss_pred ccCCEEECCCCcCCCcCHH-HccCCCcCCEEECCC
Confidence 5566666665533332222 245555555555555
No 24
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.78 E-value=1.3e-17 Score=157.70 Aligned_cols=270 Identities=16% Similarity=0.156 Sum_probs=151.3
Q ss_pred CCCCCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh--hcccCCCCcceEeeecCCCCccccCCCCCCCc
Q 019416 35 GIRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL--LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTL 112 (341)
Q Consensus 35 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L 112 (341)
++..+++|++|++++| .++.++. +..+++|++|++++| .+... +.. +++|++|++++| .+..++....+++|
T Consensus 63 ~~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~--l~~L~~L~L~~n-~l~~~~~~~~l~~L 136 (466)
T 1o6v_A 63 GVEYLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNN-QIADITPLAN--LTNLTGLTLFNN-QITDIDPLKNLTNL 136 (466)
T ss_dssp TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCGGGTT--CTTCCEEECCSS-CCCCCGGGTTCTTC
T ss_pred chhhhcCCCEEECCCC-ccCCchh-hhccccCCEEECCCC-ccccChhhcC--CCCCCEEECCCC-CCCCChHHcCCCCC
Confidence 4556777777777765 3445544 666777777777764 33333 666 777777777664 45555444556667
Q ss_pred cEEEEeCCCChHHHHHHhhhh--------------------cc--cccceEeecCCCCccccCCCCCccccceEEeeccC
Q 019416 113 KRLKICDCTNAELILKVLMDQ--------------------KG--LALESLEVDGCSSLFSLPINQLPATLRHLRIVNCM 170 (341)
Q Consensus 113 ~~L~l~~~~~~~~~~~~~~~~--------------------~~--~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~ 170 (341)
++|++++|. +.. ++.. +. ++|+.|+++++ .++.++....+++|++|+++++.
T Consensus 137 ~~L~l~~n~-l~~----~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~ 210 (466)
T 1o6v_A 137 NRLELSSNT-ISD----ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN-KVSDISVLAKLTNLESLIATNNQ 210 (466)
T ss_dssp SEEEEEEEE-ECC----CGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSC
T ss_pred CEEECCCCc-cCC----ChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCC-cCCCChhhccCCCCCEEEecCCc
Confidence 777776654 222 2221 11 45555555543 23333333344555555555542
Q ss_pred CccccCc--------ceeeeCCCCCCcCCCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCC
Q 019416 171 NLKSLGE--------SSKIRNCDSVVGPEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSL 242 (341)
Q Consensus 171 ~l~~~~~--------~l~l~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l 242 (341)
+..++. .++++++.- . .+..+. .+++|+.|+++++. +..++. +..+++|+.|++++|. +
T Consensus 211 -l~~~~~~~~l~~L~~L~l~~n~l-~------~~~~l~--~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l 277 (466)
T 1o6v_A 211 -ISDITPLGILTNLDELSLNGNQL-K------DIGTLA--SLTNLTDLDLANNQ-ISNLAP-LSGLTKLTELKLGANQ-I 277 (466)
T ss_dssp -CCCCGGGGGCTTCCEEECCSSCC-C------CCGGGG--GCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSSC-C
T ss_pred -ccccccccccCCCCEEECCCCCc-c------cchhhh--cCCCCCEEECCCCc-cccchh-hhcCCCCCEEECCCCc-c
Confidence 221111 222222211 0 001111 34457777777653 233322 5666777777777753 3
Q ss_pred ceecCCCCCCCCcceEecccCcccccchhhhccCCCcCeEeecCCCCCccCCCCCCCCCccEEEeecCCCCCcccccccc
Q 019416 243 ESFPEGGLPNTSLTSLLISECENLMSLPHQIHKATSLQDLSVSGCPSLMSFPHGGLPPNLISLGIIDCENLIPLSQWELH 322 (341)
Q Consensus 243 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~i~ 322 (341)
..++. ...+++|++|+++++ .++.++. +..+++|+.|++++| .+..++.....++|+.|++++|. +...+ .+.
T Consensus 278 ~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~--~l~ 350 (466)
T 1o6v_A 278 SNISP-LAGLTALTNLELNEN-QLEDISP-ISNLKNLTYLTLYFN-NISDISPVSSLTKLQRLFFYNNK-VSDVS--SLA 350 (466)
T ss_dssp CCCGG-GTTCTTCSEEECCSS-CCSCCGG-GGGCTTCSEEECCSS-CCSCCGGGGGCTTCCEEECCSSC-CCCCG--GGT
T ss_pred Ccccc-ccCCCccCeEEcCCC-cccCchh-hcCCCCCCEEECcCC-cCCCchhhccCccCCEeECCCCc-cCCch--hhc
Confidence 33333 223458888888875 4666654 677888888888875 45444433446788888888874 33333 357
Q ss_pred CCCceeEEEEeCCCC
Q 019416 323 KLKHLNKYTILGGLP 337 (341)
Q Consensus 323 ~~~~L~~l~l~~~C~ 337 (341)
++++|+.|++++ |+
T Consensus 351 ~l~~L~~L~l~~-n~ 364 (466)
T 1o6v_A 351 NLTNINWLSAGH-NQ 364 (466)
T ss_dssp TCTTCCEEECCS-SC
T ss_pred cCCCCCEEeCCC-Cc
Confidence 888999999887 64
No 25
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.78 E-value=2.1e-17 Score=152.53 Aligned_cols=250 Identities=16% Similarity=0.120 Sum_probs=179.8
Q ss_pred CCCCCCCcCeEEcCCCCCCccc-cccccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccC--CC
Q 019416 35 GIRTGETLESLEIDNLSSLASF-LRSELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQ--DY 107 (341)
Q Consensus 35 ~l~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~--~~ 107 (341)
.+..+++|++|++++|. ++.+ +..+..+++|++|++++| .+..+ +.. +++|++|+++++ .+..++. ..
T Consensus 88 ~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~--l~~L~~L~L~~n-~l~~~~~~~~~ 162 (390)
T 3o6n_A 88 AFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHN--TPKLTTLSMSNN-NLERIEDDTFQ 162 (390)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTT--CTTCCEEECCSS-CCCBCCTTTTS
T ss_pred hccCCCCcCEEECCCCC-CCcCCHHHhcCCCCCCEEECCCC-ccCcCCHHHhcC--CCCCcEEECCCC-ccCccChhhcc
Confidence 57889999999999874 5555 445778999999999985 55555 577 999999999986 5555543 34
Q ss_pred CCCCccEEEEeCCCChHHHHHHhhhhcccccceEeecCCCCccccCCCCCccccceEEeeccCCccccCc-------cee
Q 019416 108 FPTTLKRLKICDCTNAELILKVLMDQKGLALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLGE-------SSK 180 (341)
Q Consensus 108 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~-------~l~ 180 (341)
.+++|++|++++|.. .. ++....++|+.|+++++ .++.++ .+++|+.|+++++. +..++. .++
T Consensus 163 ~l~~L~~L~l~~n~l-~~----~~~~~l~~L~~L~l~~n-~l~~~~---~~~~L~~L~l~~n~-l~~~~~~~~~~L~~L~ 232 (390)
T 3o6n_A 163 ATTSLQNLQLSSNRL-TH----VDLSLIPSLFHANVSYN-LLSTLA---IPIAVEELDASHNS-INVVRGPVNVELTILK 232 (390)
T ss_dssp SCTTCCEEECCSSCC-SB----CCGGGCTTCSEEECCSS-CCSEEE---CCSSCSEEECCSSC-CCEEECCCCSSCCEEE
T ss_pred CCCCCCEEECCCCcC-Cc----cccccccccceeecccc-cccccC---CCCcceEEECCCCe-eeeccccccccccEEE
Confidence 579999999999863 33 32221288888888773 454442 34567777777643 333322 333
Q ss_pred eeCCCCCCcCCCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEec
Q 019416 181 IRNCDSVVGPEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLI 260 (341)
Q Consensus 181 l~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l 260 (341)
++++.-... .. + ..+++|+.|+++++......|..+..+++|+.|+++++ .+..++.....+++|++|++
T Consensus 233 l~~n~l~~~----~~---l--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L 302 (390)
T 3o6n_A 233 LQHNNLTDT----AW---L--LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDL 302 (390)
T ss_dssp CCSSCCCCC----GG---G--GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEEC
T ss_pred CCCCCCccc----HH---H--cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEEC
Confidence 333321111 01 1 14557999999997554445788899999999999996 56777766556689999999
Q ss_pred ccCcccccchhhhccCCCcCeEeecCCCCCccCCCCCCCCCccEEEeecCCC
Q 019416 261 SECENLMSLPHQIHKATSLQDLSVSGCPSLMSFPHGGLPPNLISLGIIDCEN 312 (341)
Q Consensus 261 ~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~ 312 (341)
+++ .++.+|..+..+++|+.|+++++ .+..++. ...++|++|++.+++.
T Consensus 303 ~~n-~l~~~~~~~~~l~~L~~L~L~~N-~i~~~~~-~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 303 SHN-HLLHVERNQPQFDRLENLYLDHN-SIVTLKL-STHHTLKNLTLSHNDW 351 (390)
T ss_dssp CSS-CCCCCGGGHHHHTTCSEEECCSS-CCCCCCC-CTTCCCSEEECCSSCE
T ss_pred CCC-cceecCccccccCcCCEEECCCC-ccceeCc-hhhccCCEEEcCCCCc
Confidence 997 68899988889999999999985 5777763 4568999999999753
No 26
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.78 E-value=2.5e-17 Score=157.66 Aligned_cols=122 Identities=13% Similarity=0.002 Sum_probs=80.3
Q ss_pred CCCchhhhhhcccCCCc--cc-cCCCCCCCcCeEEcCCCCCCccc-cccccCCCCccEEeccCCCCchhh-hcccCCCCc
Q 019416 15 APVPKNFLALALFPDED--KI-LGIRTGETLESLEIDNLSSLASF-LRSELAATTVKQLKINKCPDLEVL-LHRMAYTSL 89 (341)
Q Consensus 15 ~~~~~~~~~l~~~~~~~--~~-~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~l~~L 89 (341)
..+++.+..+.+..+.. .. ..+..+++|++|++++|. ++.+ |..+.++++|++|++++ +.+..+ ... +++|
T Consensus 17 ~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~-N~l~~lp~~~--l~~L 92 (520)
T 2z7x_B 17 KDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNR-IQYLDISVFKFNQELEYLDLSH-NKLVKISCHP--TVNL 92 (520)
T ss_dssp CSCCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSC-CCEEEGGGGTTCTTCCEEECCS-SCCCEEECCC--CCCC
T ss_pred ccccccccEEECCCCcccccChhhccccccccEEecCCCc-cCCcChHHhhcccCCCEEecCC-CceeecCccc--cCCc
Confidence 34446667776655431 11 356789999999999864 4554 66788899999999998 456655 336 8999
Q ss_pred ceEeeecCCCCcc--cc-CCCCCCCccEEEEeCCCChHHHHHHhhhhccccc--ceEeecCC
Q 019416 90 EYLEFSSCLFFSN--SK-QDYFPTTLKRLKICDCTNAELILKVLMDQKGLAL--ESLEVDGC 146 (341)
Q Consensus 90 ~~L~l~~~~~l~~--~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L--~~L~l~~~ 146 (341)
++|++++| .+.. +| ..+.+++|++|++++|..... ....+ ++| ++|+++++
T Consensus 93 ~~L~L~~N-~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l-~~L~L~~L~l~~n 148 (520)
T 2z7x_B 93 KHLDLSFN-AFDALPICKEFGNMSQLKFLGLSTTHLEKS----SVLPI-AHLNISKVLLVLG 148 (520)
T ss_dssp SEEECCSS-CCSSCCCCGGGGGCTTCCEEEEEESSCCGG----GGGGG-TTSCEEEEEEEEC
T ss_pred cEEeccCC-ccccccchhhhccCCcceEEEecCcccchh----hcccc-ccceeeEEEeecc
Confidence 99999886 4443 33 244578888888888763221 11111 555 77777664
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.78 E-value=5.1e-17 Score=153.57 Aligned_cols=269 Identities=19% Similarity=0.133 Sum_probs=181.0
Q ss_pred CCCCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh--hcccCCCCcceEeeecCCCCccc----------
Q 019416 36 IRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL--LHRMAYTSLEYLEFSSCLFFSNS---------- 103 (341)
Q Consensus 36 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~l~~L~~L~l~~~~~l~~~---------- 103 (341)
+..+++|++|++++| .++.++. +..+++|++|++++| .+..+ +.. +++|++|++++| .+..+
T Consensus 86 ~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~--l~~L~~L~l~~n-~l~~~~~~~~l~~L~ 159 (466)
T 1o6v_A 86 LKNLTKLVDILMNNN-QIADITP-LANLTNLTGLTLFNN-QITDIDPLKN--LTNLNRLELSSN-TISDISALSGLTSLQ 159 (466)
T ss_dssp GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCGGGTT--CTTCSEEEEEEE-EECCCGGGTTCTTCS
T ss_pred hhccccCCEEECCCC-ccccChh-hcCCCCCCEEECCCC-CCCCChHHcC--CCCCCEEECCCC-ccCCChhhccCCccc
Confidence 666777777777765 3444444 566777777777764 34333 555 666666666654 22222
Q ss_pred -----------cCCCCCCCccEEEEeCCCChHHHHHHhhhhcc-cccceEeecCCCCccccCCCCCccccceEEeeccCC
Q 019416 104 -----------KQDYFPTTLKRLKICDCTNAELILKVLMDQKG-LALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMN 171 (341)
Q Consensus 104 -----------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~ 171 (341)
+....+++|++|++++|. +.. ++.... ++|++|+++++ .+..++....+++|+.|+++++.
T Consensus 160 ~L~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~----~~~l~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~- 232 (466)
T 1o6v_A 160 QLSFGNQVTDLKPLANLTTLERLDISSNK-VSD----ISVLAKLTNLESLIATNN-QISDITPLGILTNLDELSLNGNQ- 232 (466)
T ss_dssp EEEEEESCCCCGGGTTCTTCCEEECCSSC-CCC----CGGGGGCTTCSEEECCSS-CCCCCGGGGGCTTCCEEECCSSC-
T ss_pred EeecCCcccCchhhccCCCCCEEECcCCc-CCC----ChhhccCCCCCEEEecCC-cccccccccccCCCCEEECCCCC-
Confidence 223446888889998886 333 433222 99999999985 55555445667899999999863
Q ss_pred ccccCc--------ceeeeCCCCCCcCCCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCc
Q 019416 172 LKSLGE--------SSKIRNCDSVVGPEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLE 243 (341)
Q Consensus 172 l~~~~~--------~l~l~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~ 243 (341)
+..++. .++++++.-... .+...+++|+.|+++++. +..++. +..+++|+.|++++|. +.
T Consensus 233 l~~~~~l~~l~~L~~L~l~~n~l~~~---------~~~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~n~-l~ 300 (466)
T 1o6v_A 233 LKDIGTLASLTNLTDLDLANNQISNL---------APLSGLTKLTELKLGANQ-ISNISP-LAGLTALTNLELNENQ-LE 300 (466)
T ss_dssp CCCCGGGGGCTTCSEEECCSSCCCCC---------GGGTTCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSSC-CS
T ss_pred cccchhhhcCCCCCEEECCCCccccc---------hhhhcCCCCCEEECCCCc-cCcccc-ccCCCccCeEEcCCCc-cc
Confidence 443332 444444432111 111245679999999964 455544 7788999999999974 44
Q ss_pred eecCCCCCCCCcceEecccCcccccchhhhccCCCcCeEeecCCCCCccCCCCCCCCCccEEEeecCCCCCccccccccC
Q 019416 244 SFPEGGLPNTSLTSLLISECENLMSLPHQIHKATSLQDLSVSGCPSLMSFPHGGLPPNLISLGIIDCENLIPLSQWELHK 323 (341)
Q Consensus 244 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~i~~ 323 (341)
.++. ...+++|++|+++++ .++.++. +..+++|+.|++++| .+..++.-...++|+.|++++|......+ +..
T Consensus 301 ~~~~-~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~~~---~~~ 373 (466)
T 1o6v_A 301 DISP-ISNLKNLTYLTLYFN-NISDISP-VSSLTKLQRLFFYNN-KVSDVSSLANLTNINWLSAGHNQISDLTP---LAN 373 (466)
T ss_dssp CCGG-GGGCTTCSEEECCSS-CCSCCGG-GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCCCBCGG---GTT
T ss_pred Cchh-hcCCCCCCEEECcCC-cCCCchh-hccCccCCEeECCCC-ccCCchhhccCCCCCEEeCCCCccCccch---hhc
Confidence 4443 223479999999997 4776664 788999999999986 56666544567899999999986544332 488
Q ss_pred CCceeEEEEeCCCC
Q 019416 324 LKHLNKYTILGGLP 337 (341)
Q Consensus 324 ~~~L~~l~l~~~C~ 337 (341)
+++|+.+++++ |+
T Consensus 374 l~~L~~L~l~~-n~ 386 (466)
T 1o6v_A 374 LTRITQLGLND-QA 386 (466)
T ss_dssp CTTCCEEECCC-EE
T ss_pred CCCCCEEeccC-Cc
Confidence 99999999998 63
No 28
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.78 E-value=6.7e-18 Score=152.38 Aligned_cols=226 Identities=22% Similarity=0.277 Sum_probs=156.6
Q ss_pred CCCcceEeeecCCCCccccC-CCCCCCccEEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCCC-CCcccc
Q 019416 86 YTSLEYLEFSSCLFFSNSKQ-DYFPTTLKRLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPIN-QLPATL 161 (341)
Q Consensus 86 l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~-~~~~~L 161 (341)
..++++|+++++ .+..+|. ...+++|++|++++|... . +|..++ ++|++|+++++ .++.+|.. ..+++|
T Consensus 80 ~~~l~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~n~l~-~----lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L 152 (328)
T 4fcg_A 80 QPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAGLM-E----LPDTMQQFAGLETLTLARN-PLRALPASIASLNRL 152 (328)
T ss_dssp STTCCEEEEESS-CCSSCCSCGGGGTTCSEEEEESSCCC-C----CCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTC
T ss_pred ccceeEEEccCC-CchhcChhhhhCCCCCEEECCCCCcc-c----hhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCC
Confidence 355556666553 3444443 222556666666665422 3 554444 66666666653 44455443 445677
Q ss_pred ceEEeeccCCccccCcceeeeCCCCCCcCCCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCC
Q 019416 162 RHLRIVNCMNLKSLGESSKIRNCDSVVGPEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPS 241 (341)
Q Consensus 162 ~~L~l~~~~~l~~~~~~l~l~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~ 241 (341)
+.|++++|..+..+|..+.-.... + . +. .+++|+.|+++++ .+..+|..+..+++|++|++++|.
T Consensus 153 ~~L~L~~n~~~~~~p~~~~~~~~~------~--~---~~--~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~- 217 (328)
T 4fcg_A 153 RELSIRACPELTELPEPLASTDAS------G--E---HQ--GLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSP- 217 (328)
T ss_dssp CEEEEEEETTCCCCCSCSEEEC-C------C--C---EE--ESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSC-
T ss_pred CEEECCCCCCccccChhHhhccch------h--h---hc--cCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCC-
Confidence 777777766555555422110000 0 0 11 3447999999996 566889999999999999999974
Q ss_pred CceecCCCCCCCCcceEecccCcccccchhhhccCCCcCeEeecCCCCCccCCCC-CCCCCccEEEeecCCCCCcccccc
Q 019416 242 LESFPEGGLPNTSLTSLLISECENLMSLPHQIHKATSLQDLSVSGCPSLMSFPHG-GLPPNLISLGIIDCENLIPLSQWE 320 (341)
Q Consensus 242 l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~c~~~~~~~~~~ 320 (341)
+..++.....+++|++|++++|...+.+|..+..+++|++|++++|+....++.. ...++|++|++++|+.....|.+
T Consensus 218 l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~- 296 (328)
T 4fcg_A 218 LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL- 296 (328)
T ss_dssp CCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGG-
T ss_pred CCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHH-
Confidence 5556654445679999999998877888988999999999999999888888865 45789999999999999888875
Q ss_pred ccCCCceeEEEEeC
Q 019416 321 LHKLKHLNKYTILG 334 (341)
Q Consensus 321 i~~~~~L~~l~l~~ 334 (341)
+.++++++.+.+..
T Consensus 297 l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 297 IAQLPANCIILVPP 310 (328)
T ss_dssp GGGSCTTCEEECCG
T ss_pred HhhccCceEEeCCH
Confidence 89999999998765
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.77 E-value=1.6e-17 Score=156.62 Aligned_cols=270 Identities=15% Similarity=0.157 Sum_probs=123.4
Q ss_pred CCCCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh-hcccCCCCcceEeeecCCCCccccCCCCCCCccE
Q 019416 36 IRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL-LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLKR 114 (341)
Q Consensus 36 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~ 114 (341)
+..+++|++|++++| .++.++ +..+++|++|++++| .+..+ ++. +++|++|++++| .+..++ .+.+++|++
T Consensus 60 l~~l~~L~~L~Ls~n-~l~~~~--~~~l~~L~~L~Ls~N-~l~~~~~~~--l~~L~~L~L~~N-~l~~l~-~~~l~~L~~ 131 (457)
T 3bz5_A 60 IEKLTGLTKLICTSN-NITTLD--LSQNTNLTYLACDSN-KLTNLDVTP--LTKLTYLNCDTN-KLTKLD-VSQNPLLTY 131 (457)
T ss_dssp GGGCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSS-CCSCCCCTT--CTTCCEEECCSS-CCSCCC-CTTCTTCCE
T ss_pred hcccCCCCEEEccCC-cCCeEc--cccCCCCCEEECcCC-CCceeecCC--CCcCCEEECCCC-cCCeec-CCCCCcCCE
Confidence 334444444444443 233332 334444555555442 23333 444 455555555443 333333 233445555
Q ss_pred EEEeCCCChHHHHHHhhhhcccccceEeecCCCCccccCCCCCccccceEEeeccCCccccCcceeeeCCCCCCc-CCCc
Q 019416 115 LKICDCTNAELILKVLMDQKGLALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVG-PEGE 193 (341)
Q Consensus 115 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~-~~~~ 193 (341)
|++++|. +.. ++-.-.++|++|+++++..+..++ ...+++|+.|+++++ .++.++ ++.++.++. ....
T Consensus 132 L~l~~N~-l~~----l~l~~l~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~ls~n-~l~~l~----l~~l~~L~~L~l~~ 200 (457)
T 3bz5_A 132 LNCARNT-LTE----IDVSHNTQLTELDCHLNKKITKLD-VTPQTQLTTLDCSFN-KITELD----VSQNKLLNRLNCDT 200 (457)
T ss_dssp EECTTSC-CSC----CCCTTCTTCCEEECTTCSCCCCCC-CTTCTTCCEEECCSS-CCCCCC----CTTCTTCCEEECCS
T ss_pred EECCCCc-cce----eccccCCcCCEEECCCCCcccccc-cccCCcCCEEECCCC-ccceec----cccCCCCCEEECcC
Confidence 5555443 222 210000455555555544444332 123345555555543 233322 233333332 1111
Q ss_pred ccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCC--------CCCcceEecccCcc
Q 019416 194 SSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLP--------NTSLTSLLISECEN 265 (341)
Q Consensus 194 ~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~--------~~~L~~L~l~~~~~ 265 (341)
..+..++...+++|+.|+++++ .+..+| +..+++|+.|+++++ .++.++...++ ..+|+.|++++|..
T Consensus 201 N~l~~~~l~~l~~L~~L~Ls~N-~l~~ip--~~~l~~L~~L~l~~N-~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~ 276 (457)
T 3bz5_A 201 NNITKLDLNQNIQLTFLDCSSN-KLTEID--VTPLTQLTYFDCSVN-PLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQ 276 (457)
T ss_dssp SCCSCCCCTTCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSS-CCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTT
T ss_pred CcCCeeccccCCCCCEEECcCC-cccccC--ccccCCCCEEEeeCC-cCCCcCHHHCCCCCEEeccCCCCCEEECCCCcc
Confidence 1111122224446777777764 344454 566677777777765 34444433222 01333444444433
Q ss_pred cccchhhhccCCCcCeEeecCCCCCccCCCC---------CCCCCccEEEeecCCCCCccccccccCCCceeEEEEeC
Q 019416 266 LMSLPHQIHKATSLQDLSVSGCPSLMSFPHG---------GLPPNLISLGIIDCENLIPLSQWELHKLKHLNKYTILG 334 (341)
Q Consensus 266 l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~---------~~~~~L~~L~l~~c~~~~~~~~~~i~~~~~L~~l~l~~ 334 (341)
+..+| ...+++|+.|++++|..+..++.. ...++|++|+++++. ++.. .+..+++|+.|++++
T Consensus 277 ~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~-l~~l---~l~~l~~L~~L~l~~ 348 (457)
T 3bz5_A 277 LIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTE-LTEL---DVSHNTKLKSLSCVN 348 (457)
T ss_dssp CCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCC-CSCC---CCTTCTTCSEEECCS
T ss_pred CCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCc-cccc---ccccCCcCcEEECCC
Confidence 33343 345677888888777655544431 112456666665542 2323 257778888888876
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.77 E-value=7.4e-18 Score=158.85 Aligned_cols=271 Identities=18% Similarity=0.141 Sum_probs=175.5
Q ss_pred cCCCCCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh-hcccCCCCcceEeeecCCCCccccCCCCCCCc
Q 019416 34 LGIRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL-LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTL 112 (341)
Q Consensus 34 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L 112 (341)
..++.+++|++|+++++ .++.+| .+..+++|++|++++| .+..+ ++. +++|++|++++| .+..++ .+.+++|
T Consensus 36 ~~~~~l~~L~~L~Ls~n-~l~~~~-~l~~l~~L~~L~Ls~n-~l~~~~~~~--l~~L~~L~Ls~N-~l~~~~-~~~l~~L 108 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNS-SITDMT-GIEKLTGLTKLICTSN-NITTLDLSQ--NTNLTYLACDSN-KLTNLD-VTPLTKL 108 (457)
T ss_dssp EEHHHHTTCCEEECCSS-CCCCCT-TGGGCTTCSEEECCSS-CCSCCCCTT--CTTCSEEECCSS-CCSCCC-CTTCTTC
T ss_pred cChhHcCCCCEEEccCC-CcccCh-hhcccCCCCEEEccCC-cCCeEcccc--CCCCCEEECcCC-CCceee-cCCCCcC
Confidence 45667999999999986 566666 5788999999999995 56666 888 999999999986 566665 5668999
Q ss_pred cEEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCCCCCccccceEEeeccCCccccCcceeeeCCCCCCc-
Q 019416 113 KRLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVG- 189 (341)
Q Consensus 113 ~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~- 189 (341)
++|++++|. +.. ++ ++ ++|++|++++ +.++.++ ...+++|+.|+++++..+..++ +..++.++.
T Consensus 109 ~~L~L~~N~-l~~----l~--~~~l~~L~~L~l~~-N~l~~l~-l~~l~~L~~L~l~~n~~~~~~~----~~~l~~L~~L 175 (457)
T 3bz5_A 109 TYLNCDTNK-LTK----LD--VSQNPLLTYLNCAR-NTLTEID-VSHNTQLTELDCHLNKKITKLD----VTPQTQLTTL 175 (457)
T ss_dssp CEEECCSSC-CSC----CC--CTTCTTCCEEECTT-SCCSCCC-CTTCTTCCEEECTTCSCCCCCC----CTTCTTCCEE
T ss_pred CEEECCCCc-CCe----ec--CCCCCcCCEEECCC-Cccceec-cccCCcCCEEECCCCCcccccc----cccCCcCCEE
Confidence 999999986 444 44 33 9999999988 4677665 3456799999999886555442 223333332
Q ss_pred CCCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccc
Q 019416 190 PEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSL 269 (341)
Q Consensus 190 ~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l 269 (341)
......+..+|...+++|+.|+++++. +..+ .+..+++|+.|+++++ .++.+|.. .+++|++|+++++ .++.+
T Consensus 176 ~ls~n~l~~l~l~~l~~L~~L~l~~N~-l~~~--~l~~l~~L~~L~Ls~N-~l~~ip~~--~l~~L~~L~l~~N-~l~~~ 248 (457)
T 3bz5_A 176 DCSFNKITELDVSQNKLLNRLNCDTNN-ITKL--DLNQNIQLTFLDCSSN-KLTEIDVT--PLTQLTYFDCSVN-PLTEL 248 (457)
T ss_dssp ECCSSCCCCCCCTTCTTCCEEECCSSC-CSCC--CCTTCTTCSEEECCSS-CCSCCCCT--TCTTCSEEECCSS-CCSCC
T ss_pred ECCCCccceeccccCCCCCEEECcCCc-CCee--ccccCCCCCEEECcCC-cccccCcc--ccCCCCEEEeeCC-cCCCc
Confidence 111111222333345568888887753 4444 3667788888888875 35555522 3458888888875 46665
Q ss_pred hhhhccCCCcC----------eEeecCCCCCccCCCCCCCCCccEEEeecCCCCCcccc-------ccccCCCceeEEEE
Q 019416 270 PHQIHKATSLQ----------DLSVSGCPSLMSFPHGGLPPNLISLGIIDCENLIPLSQ-------WELHKLKHLNKYTI 332 (341)
Q Consensus 270 ~~~l~~l~~L~----------~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~~~~~~~-------~~i~~~~~L~~l~l 332 (341)
| ...+++|+ .+++++|.....++. +..++|+.|++++|..+...+. ..+..+++|++|++
T Consensus 249 ~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~-~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L 325 (457)
T 3bz5_A 249 D--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQA-EGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYL 325 (457)
T ss_dssp C--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC-TTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC
T ss_pred C--HHHCCCCCEEeccCCCCCEEECCCCccCCcccc-cccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEEC
Confidence 4 23444444 444444443333332 2347888888888865542211 01344556666665
Q ss_pred eC
Q 019416 333 LG 334 (341)
Q Consensus 333 ~~ 334 (341)
++
T Consensus 326 ~~ 327 (457)
T 3bz5_A 326 NN 327 (457)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 31
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.76 E-value=9.5e-17 Score=162.42 Aligned_cols=308 Identities=14% Similarity=0.128 Sum_probs=197.0
Q ss_pred CCCCCCCCCCchhhhhhcccCCC---ccccCCCCCCCcCeEEcCCCCCCccc-cccccCCCCccEEeccCCCCchhh---
Q 019416 8 PFDLEPQAPVPKNFLALALFPDE---DKILGIRTGETLESLEIDNLSSLASF-LRSELAATTVKQLKINKCPDLEVL--- 80 (341)
Q Consensus 8 ~~~~~~~~~~~~~~~~l~~~~~~---~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~--- 80 (341)
.+..-|. .|+.+..|.+..+. .....+..+++|++|++++|.....+ |..+..+++|++|++++| .+..+
T Consensus 15 ~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N-~l~~~~p~ 91 (844)
T 3j0a_A 15 NLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS-KIYFLHPD 91 (844)
T ss_dssp CSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC-CCCEECTT
T ss_pred CCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC-cCcccCHh
Confidence 3444454 77788888876542 22346888999999999998666666 566888999999999985 44443
Q ss_pred -hcccCCCCcceEeeecCCCCccccC---CCCCCCccEEEEeCCCChHHHHHHhh-hhcc--cccceEeecCCCCccccC
Q 019416 81 -LHRMAYTSLEYLEFSSCLFFSNSKQ---DYFPTTLKRLKICDCTNAELILKVLM-DQKG--LALESLEVDGCSSLFSLP 153 (341)
Q Consensus 81 -~~~~~l~~L~~L~l~~~~~l~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~--~~L~~L~l~~~~~l~~l~ 153 (341)
++. +++|++|++++|.....++. ...+++|++|++++|..... .+ ..++ ++|++|+++++ .++...
T Consensus 92 ~~~~--l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~----~~~~~~~~L~~L~~L~Ls~N-~i~~~~ 164 (844)
T 3j0a_A 92 AFQG--LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL----YLHPSFGKLNSLKSIDFSSN-QIFLVC 164 (844)
T ss_dssp SSCS--CSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCC----CCCGGGGTCSSCCEEEEESS-CCCCCC
T ss_pred HccC--CcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccc----ccchhHhhCCCCCEEECCCC-cCCeeC
Confidence 888 99999999998744333443 34589999999999874332 22 2333 99999999884 454433
Q ss_pred CC--CCc--cccceEEeeccCCccccC---------------cceeeeCCCCCCc-CCCc------cc------------
Q 019416 154 IN--QLP--ATLRHLRIVNCMNLKSLG---------------ESSKIRNCDSVVG-PEGE------SS------------ 195 (341)
Q Consensus 154 ~~--~~~--~~L~~L~l~~~~~l~~~~---------------~~l~l~~~~~l~~-~~~~------~~------------ 195 (341)
.. ..+ ++|+.|+++++.-....+ ..++++++..... +... ..
T Consensus 165 ~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~ 244 (844)
T 3j0a_A 165 EHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMG 244 (844)
T ss_dssp SGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCB
T ss_pred HHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccc
Confidence 32 122 678888887754222111 1344444421111 0000 00
Q ss_pred -------ccc-----cccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecC-CCCCCCCcceEeccc
Q 019416 196 -------LEN-----MTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPE-GGLPNTSLTSLLISE 262 (341)
Q Consensus 196 -------~~~-----l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~l~~ 262 (341)
+.. +..-..++|+.|+++++......+..+..+++|+.|+++++. +..++. ....+++|++|++++
T Consensus 245 ~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~ 323 (844)
T 3j0a_A 245 AGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK-INKIADEAFYGLDNLQVLNLSY 323 (844)
T ss_dssp CSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCC-CCEECTTTTTTCSSCCEEEEES
T ss_pred ccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCc-CCCCChHHhcCCCCCCEEECCC
Confidence 000 000012468888888765444446777888888999988864 444443 333456888998888
Q ss_pred Ccccccc-hhhhccCCCcCeEeecCCCCCccCCCCC--CCCCccEEEeecCCCCCccccccccCCCceeEEEEeC
Q 019416 263 CENLMSL-PHQIHKATSLQDLSVSGCPSLMSFPHGG--LPPNLISLGIIDCENLIPLSQWELHKLKHLNKYTILG 334 (341)
Q Consensus 263 ~~~l~~l-~~~l~~l~~L~~L~l~~c~~l~~~~~~~--~~~~L~~L~l~~c~~~~~~~~~~i~~~~~L~~l~l~~ 334 (341)
+ .++.+ +..+..+++|+.|+++++ .+..++... ..++|++|+++++. ++. +..+++|+.+++++
T Consensus 324 N-~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~-----i~~~~~L~~L~l~~ 390 (844)
T 3j0a_A 324 N-LLGELYSSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDNA-LTT-----IHFIPSIPDIFLSG 390 (844)
T ss_dssp C-CCSCCCSCSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETCC-SCC-----CSSCCSCSEEEEES
T ss_pred C-CCCccCHHHhcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCCC-CCc-----ccCCCCcchhccCC
Confidence 6 46655 557788888999998875 566666542 36788999988864 332 23366777777777
No 32
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.76 E-value=1.1e-16 Score=154.73 Aligned_cols=102 Identities=19% Similarity=0.152 Sum_probs=64.5
Q ss_pred CCCchhhhhhcccCCC--cc-ccCCCCCCCcCeEEcCCCCCCccc-cccccCCCCccEEeccCCCCchhh-hcccCCCCc
Q 019416 15 APVPKNFLALALFPDE--DK-ILGIRTGETLESLEIDNLSSLASF-LRSELAATTVKQLKINKCPDLEVL-LHRMAYTSL 89 (341)
Q Consensus 15 ~~~~~~~~~l~~~~~~--~~-~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~l~~L 89 (341)
..+|+.+..|.+..+. .. ...+..+++|++|++++| .++.+ |..+.++++|++|++++ +.+..+ ... +++|
T Consensus 48 ~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~lp~~~--l~~L 123 (562)
T 3a79_B 48 KDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSH-NRLQNISCCP--MASL 123 (562)
T ss_dssp TTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTT-SCCCEECSCC--CTTC
T ss_pred CCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCC-CcCCccCccc--cccC
Confidence 3345566666664432 11 135677888888888876 44454 55577788888888887 445555 335 7888
Q ss_pred ceEeeecCCCCcccc---CCCCCCCccEEEEeCCC
Q 019416 90 EYLEFSSCLFFSNSK---QDYFPTTLKRLKICDCT 121 (341)
Q Consensus 90 ~~L~l~~~~~l~~~~---~~~~~~~L~~L~l~~~~ 121 (341)
++|++++| .+..++ ..+.+++|++|+++++.
T Consensus 124 ~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n~ 157 (562)
T 3a79_B 124 RHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAAK 157 (562)
T ss_dssp SEEECCSS-CCSBCCCCGGGGGCTTCCEEEEECSB
T ss_pred CEEECCCC-CccccCchHhhcccCcccEEecCCCc
Confidence 88888775 454443 23346777888777765
No 33
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.76 E-value=5.9e-17 Score=157.82 Aligned_cols=249 Identities=16% Similarity=0.132 Sum_probs=175.0
Q ss_pred CCCCCCCcCeEEcCCCCCCccccc-cccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccC--CC
Q 019416 35 GIRTGETLESLEIDNLSSLASFLR-SELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQ--DY 107 (341)
Q Consensus 35 ~l~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~--~~ 107 (341)
.++.+++|++|++++|. ++.+++ .+..+++|++|++++| .+..+ ++. +++|++|++++| .+..++. ..
T Consensus 94 ~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~--l~~L~~L~Ls~N-~l~~~~~~~~~ 168 (597)
T 3oja_B 94 AFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHN--TPKLTTLSMSNN-NLERIEDDTFQ 168 (597)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTT--CTTCCEEECCSS-CCCBCCTTTTT
T ss_pred HhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCCEEEeeCC-CCCCCCHHHhcc--CCCCCEEEeeCC-cCCCCChhhhh
Confidence 67889999999999875 556654 4678999999999995 55555 678 999999999986 5555543 45
Q ss_pred CCCCccEEEEeCCCChHHHHHHhhhhcccccceEeecCCCCccccCCCCCccccceEEeeccCCccccCc-------cee
Q 019416 108 FPTTLKRLKICDCTNAELILKVLMDQKGLALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLGE-------SSK 180 (341)
Q Consensus 108 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~-------~l~ 180 (341)
.+++|++|++++|. +.. ++....++|+.|+++++ .++.++ .+++|+.|+++++. +..++. .+.
T Consensus 169 ~l~~L~~L~L~~N~-l~~----~~~~~l~~L~~L~l~~n-~l~~l~---~~~~L~~L~ls~n~-l~~~~~~~~~~L~~L~ 238 (597)
T 3oja_B 169 ATTSLQNLQLSSNR-LTH----VDLSLIPSLFHANVSYN-LLSTLA---IPIAVEELDASHNS-INVVRGPVNVELTILK 238 (597)
T ss_dssp TCTTCCEEECTTSC-CSB----CCGGGCTTCSEEECCSS-CCSEEE---CCTTCSEEECCSSC-CCEEECSCCSCCCEEE
T ss_pred cCCcCcEEECcCCC-CCC----cChhhhhhhhhhhcccC-cccccc---CCchhheeeccCCc-ccccccccCCCCCEEE
Confidence 58999999999986 333 33222288999998874 554443 45578888887753 333322 333
Q ss_pred eeCCCCCCcCCCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEec
Q 019416 181 IRNCDSVVGPEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLI 260 (341)
Q Consensus 181 l~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l 260 (341)
++++... .+ ..+. .+++|+.|+++++......|..+..+++|+.|++++| .+..++.....+++|++|++
T Consensus 239 L~~n~l~-~~---~~l~-----~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L 308 (597)
T 3oja_B 239 LQHNNLT-DT---AWLL-----NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDL 308 (597)
T ss_dssp CCSSCCC-CC---GGGG-----GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEEC
T ss_pred CCCCCCC-CC---hhhc-----cCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEEC
Confidence 3333211 11 0111 3456889999887554555778888889999999885 46666665555679999999
Q ss_pred ccCcccccchhhhccCCCcCeEeecCCCCCccCCCCCCCCCccEEEeecCC
Q 019416 261 SECENLMSLPHQIHKATSLQDLSVSGCPSLMSFPHGGLPPNLISLGIIDCE 311 (341)
Q Consensus 261 ~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~ 311 (341)
+++ .+..+|..+..+++|+.|++++| .+..++. ...++|+.|++++++
T Consensus 309 s~N-~l~~i~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 309 SHN-HLLHVERNQPQFDRLENLYLDHN-SIVTLKL-STHHTLKNLTLSHND 356 (597)
T ss_dssp CSS-CCCCCGGGHHHHTTCSEEECCSS-CCCCCCC-CTTCCCSEEECCSSC
T ss_pred CCC-CCCccCcccccCCCCCEEECCCC-CCCCcCh-hhcCCCCEEEeeCCC
Confidence 986 57788888888889999999885 4666653 345789999998875
No 34
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.75 E-value=4.5e-17 Score=160.93 Aligned_cols=145 Identities=16% Similarity=0.141 Sum_probs=87.0
Q ss_pred CCCchhhhhhcccCCC--ccc-cCCCCCCCcCeEEcCCCCCCccc-cccccCCCCccEEeccCCCCchhh----hcccCC
Q 019416 15 APVPKNFLALALFPDE--DKI-LGIRTGETLESLEIDNLSSLASF-LRSELAATTVKQLKINKCPDLEVL----LHRMAY 86 (341)
Q Consensus 15 ~~~~~~~~~l~~~~~~--~~~-~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l 86 (341)
..+|..+..+.+..+. ... ..+..+++|++|+++++. ++.+ |..+..+++|++|++++| .+..+ ++. +
T Consensus 21 ~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~--l 96 (680)
T 1ziw_A 21 DDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT-ISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAF--C 96 (680)
T ss_dssp SCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSC-CCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTT--C
T ss_pred cccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCc-cCccCHHHHhcccCcCEEECCCC-ccCccChhhhcc--C
Confidence 3455666666665432 111 246677888888888754 3443 444666788888888774 44433 666 7
Q ss_pred CCcceEeeecCCCCccccC--CCCCCCccEEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCCC----CCc
Q 019416 87 TSLEYLEFSSCLFFSNSKQ--DYFPTTLKRLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPIN----QLP 158 (341)
Q Consensus 87 ~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~----~~~ 158 (341)
++|++|++++| .+..++. ...+++|++|++++|..... .+..++ ++|++|+++++ .++.++.. ...
T Consensus 97 ~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~ 170 (680)
T 1ziw_A 97 TNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLSST----KLGTQVQLENLQELLLSNN-KIQALKSEELDIFAN 170 (680)
T ss_dssp TTCSEEECCSS-CCCCCCSCTTTTCTTCCEEECCSSCCSCC----CCCSSSCCTTCCEEECCSS-CCCCBCHHHHGGGTT
T ss_pred CCCCEEECCCC-ccCccChhHccccCCCCEEECCCCccccc----CchhhcccccCCEEEccCC-cccccCHHHhhcccc
Confidence 78888888775 4555543 33467788888877753332 333333 77777777763 44444332 123
Q ss_pred cccceEEeecc
Q 019416 159 ATLRHLRIVNC 169 (341)
Q Consensus 159 ~~L~~L~l~~~ 169 (341)
++|+.|+++++
T Consensus 171 ~~L~~L~L~~n 181 (680)
T 1ziw_A 171 SSLKKLELSSN 181 (680)
T ss_dssp CEESEEECTTC
T ss_pred ccccEEECCCC
Confidence 56777777765
No 35
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.74 E-value=3.5e-18 Score=153.20 Aligned_cols=243 Identities=13% Similarity=0.064 Sum_probs=174.8
Q ss_pred CCcCeEEcCCCCCCc--cccccccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccC-CCCCCCc
Q 019416 40 ETLESLEIDNLSSLA--SFLRSELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQ-DYFPTTL 112 (341)
Q Consensus 40 ~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L 112 (341)
.++++|+++++.... .+|..+..+++|++|++++++.+... +.. +++|++|+++++.....+|. ...+++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~--l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK--LTQLHYLYITHTNVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGG--CTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhc--CCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence 689999999875544 57888889999999999964555433 888 99999999998643335554 4558999
Q ss_pred cEEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCcc-ccCCC-CCcc-ccceEEeeccCCccccCcceeeeCCCCC
Q 019416 113 KRLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLF-SLPIN-QLPA-TLRHLRIVNCMNLKSLGESSKIRNCDSV 187 (341)
Q Consensus 113 ~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~-~l~~~-~~~~-~L~~L~l~~~~~l~~~~~~l~l~~~~~l 187 (341)
++|++++|..... +|..+. ++|++|+++++ .++ .+|.. ..++ +|+.|+++++.--..+|..
T Consensus 128 ~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~--------- 193 (313)
T 1ogq_A 128 VTLDFSYNALSGT----LPPSISSLPNLVGITFDGN-RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT--------- 193 (313)
T ss_dssp CEEECCSSEEESC----CCGGGGGCTTCCEEECCSS-CCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG---------
T ss_pred CEEeCCCCccCCc----CChHHhcCCCCCeEECcCC-cccCcCCHHHhhhhhcCcEEECcCCeeeccCChH---------
Confidence 9999999874434 666665 99999999885 444 55544 3344 8999999876321122221
Q ss_pred CcCCCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccc
Q 019416 188 VGPEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLM 267 (341)
Q Consensus 188 ~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~ 267 (341)
+. .+ +|+.|+++++......|..+..+++|+.|+++++.-....+. ...+++|++|+++++. ++
T Consensus 194 -----------~~--~l-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~-l~ 257 (313)
T 1ogq_A 194 -----------FA--NL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNR-IY 257 (313)
T ss_dssp -----------GG--GC-CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSC-CE
T ss_pred -----------Hh--CC-cccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCc-cc
Confidence 11 22 289999998765456678888899999999998653323333 2334799999999865 55
Q ss_pred -cchhhhccCCCcCeEeecCCCCCccCCCCCCCCCccEEEeecCCCCC
Q 019416 268 -SLPHQIHKATSLQDLSVSGCPSLMSFPHGGLPPNLISLGIIDCENLI 314 (341)
Q Consensus 268 -~l~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~~~ 314 (341)
.+|..+..+++|++|+++++.--..+|..+..++|+.+++.+++.+.
T Consensus 258 ~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 258 GTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp ECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEE
T ss_pred CcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCcc
Confidence 78888899999999999886433367665556788888888776444
No 36
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.74 E-value=3.3e-16 Score=154.77 Aligned_cols=126 Identities=12% Similarity=0.133 Sum_probs=65.5
Q ss_pred ccccceEeeccCcCCCcc-cccCCCCCCcCeEEeecCCCCceecCC---------CCCCCCcceEecccCcccccchh-h
Q 019416 204 TLELRELEIWDCLELEFL-PEDMHNFTDLNLLSISNCPSLESFPEG---------GLPNTSLTSLLISECENLMSLPH-Q 272 (341)
Q Consensus 204 ~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~~~~~---------~~~~~~L~~L~l~~~~~l~~l~~-~ 272 (341)
+++|+.|+++++. +..+ +..+..+++|+.|+++++. +..++.. ...+++|++|+++++ .++.+|. .
T Consensus 479 l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~ 555 (680)
T 1ziw_A 479 LRNLTILDLSNNN-IANINDDMLEGLEKLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEV 555 (680)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCTTT
T ss_pred CCCCCEEECCCCC-CCcCChhhhccccccCEEeCCCCC-ccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCHHH
Confidence 3345556665543 2333 2345555666666666542 3322211 112346666666664 4556654 3
Q ss_pred hccCCCcCeEeecCCCCCccCCCCCC--CCCccEEEeecCCCCCcccccccc-CCCceeEEEEeC
Q 019416 273 IHKATSLQDLSVSGCPSLMSFPHGGL--PPNLISLGIIDCENLIPLSQWELH-KLKHLNKYTILG 334 (341)
Q Consensus 273 l~~l~~L~~L~l~~c~~l~~~~~~~~--~~~L~~L~l~~c~~~~~~~~~~i~-~~~~L~~l~l~~ 334 (341)
+..+++|+.|++++ +.++.++...+ .++|++|+++++ .++..+...+. .+++|+.+++++
T Consensus 556 ~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~ 618 (680)
T 1ziw_A 556 FKDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRF 618 (680)
T ss_dssp TTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTT
T ss_pred cccccCcceeECCC-CCCCcCCHhHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccC
Confidence 56666677777755 35666655432 466777777665 33322211233 456777777766
No 37
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.74 E-value=2.6e-16 Score=150.59 Aligned_cols=119 Identities=18% Similarity=0.145 Sum_probs=89.7
Q ss_pred CCcCeEEcCCCCCCccc-cccccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccCCCCCCCccE
Q 019416 40 ETLESLEIDNLSSLASF-LRSELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLKR 114 (341)
Q Consensus 40 ~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~ 114 (341)
++|++|++++|. ++.+ +..+.++++|++|++++| .+..+ +.. +++|++|+++++ .+..+|.. .+++|++
T Consensus 21 ~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~--l~~L~~L~Ls~N-~l~~lp~~-~l~~L~~ 94 (520)
T 2z7x_B 21 QKTTILNISQNY-ISELWTSDILSLSKLRILIISHN-RIQYLDISVFKF--NQELEYLDLSHN-KLVKISCH-PTVNLKH 94 (520)
T ss_dssp TTCSEEECCSSC-CCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTT--CTTCCEEECCSS-CCCEEECC-CCCCCSE
T ss_pred ccccEEECCCCc-ccccChhhccccccccEEecCCC-ccCCcChHHhhc--ccCCCEEecCCC-ceeecCcc-ccCCccE
Confidence 899999999875 5555 456888999999999995 55444 888 999999999986 67788776 7899999
Q ss_pred EEEeCCCChH-HHHHHhhhhcc--cccceEeecCCCCccccCCCCCcccc--ceEEeeccC
Q 019416 115 LKICDCTNAE-LILKVLMDQKG--LALESLEVDGCSSLFSLPINQLPATL--RHLRIVNCM 170 (341)
Q Consensus 115 L~l~~~~~~~-~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~~~~~~L--~~L~l~~~~ 170 (341)
|++++|.... . +|..++ ++|++|+++++ .++... ...+++| +.|+++++.
T Consensus 95 L~L~~N~l~~~~----~p~~~~~l~~L~~L~L~~n-~l~~~~-~~~l~~L~L~~L~l~~n~ 149 (520)
T 2z7x_B 95 LDLSFNAFDALP----ICKEFGNMSQLKFLGLSTT-HLEKSS-VLPIAHLNISKVLLVLGE 149 (520)
T ss_dssp EECCSSCCSSCC----CCGGGGGCTTCCEEEEEES-SCCGGG-GGGGTTSCEEEEEEEECT
T ss_pred EeccCCcccccc----chhhhccCCcceEEEecCc-ccchhh-ccccccceeeEEEeeccc
Confidence 9999997433 2 455555 99999999885 444321 1334455 777777653
No 38
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.73 E-value=6.6e-16 Score=150.26 Aligned_cols=248 Identities=28% Similarity=0.320 Sum_probs=143.3
Q ss_pred cCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhhhcccCCCCcceEeeecCCCCccccCCCCCCCccEEEEeCCC
Q 019416 42 LESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVLLHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLKRLKICDCT 121 (341)
Q Consensus 42 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~ 121 (341)
+++|+++++ .++.+|..+. ++|++|++++| .+..+-.. +++|++|++++| .+..+|. .+++|++|++++|.
T Consensus 42 l~~L~ls~n-~L~~lp~~l~--~~L~~L~L~~N-~l~~lp~~--l~~L~~L~Ls~N-~l~~lp~--~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 42 NAVLNVGES-GLTTLPDCLP--AHITTLVIPDN-NLTSLPAL--PPELRTLEVSGN-QLTSLPV--LPPGLLELSIFSNP 112 (622)
T ss_dssp CCEEECCSS-CCSCCCSCCC--TTCSEEEECSC-CCSCCCCC--CTTCCEEEECSC-CCSCCCC--CCTTCCEEEECSCC
T ss_pred CcEEEecCC-CcCccChhhC--CCCcEEEecCC-CCCCCCCc--CCCCCEEEcCCC-cCCcCCC--CCCCCCEEECcCCc
Confidence 455555543 3344444332 45555555552 33333223 455555555543 3444443 34555555555543
Q ss_pred ChHHHHHHhhhhcccccceEeecCCCCccccCCCCCccccceEEeeccCCccccCc------ceeeeCCCCCCcCCCccc
Q 019416 122 NAELILKVLMDQKGLALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLGE------SSKIRNCDSVVGPEGESS 195 (341)
Q Consensus 122 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~------~l~l~~~~~l~~~~~~~~ 195 (341)
+.. +|... ++|+.|++++ +.++.+|. .+++|++|+++++ .+..+|. .+.++++.
T Consensus 113 -l~~----l~~~l-~~L~~L~L~~-N~l~~lp~--~l~~L~~L~Ls~N-~l~~l~~~~~~L~~L~L~~N~---------- 172 (622)
T 3g06_A 113 -LTH----LPALP-SGLCKLWIFG-NQLTSLPV--LPPGLQELSVSDN-QLASLPALPSELCKLWAYNNQ---------- 172 (622)
T ss_dssp -CCC----CCCCC-TTCCEEECCS-SCCSCCCC--CCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSC----------
T ss_pred -CCC----CCCCC-CCcCEEECCC-CCCCcCCC--CCCCCCEEECcCC-cCCCcCCccCCCCEEECCCCC----------
Confidence 222 33322 4555555544 23444442 2245555555543 2332221 11111111
Q ss_pred ccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccchhhhcc
Q 019416 196 LENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQIHK 275 (341)
Q Consensus 196 ~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~ 275 (341)
+..+| ..+++|+.|+++++ .+..+|.. +++|+.|++++| .+..++.. +++|++|+++++ .++.+| ..
T Consensus 173 l~~l~-~~~~~L~~L~Ls~N-~l~~l~~~---~~~L~~L~L~~N-~l~~l~~~---~~~L~~L~Ls~N-~L~~lp---~~ 239 (622)
T 3g06_A 173 LTSLP-MLPSGLQELSVSDN-QLASLPTL---PSELYKLWAYNN-RLTSLPAL---PSGLKELIVSGN-RLTSLP---VL 239 (622)
T ss_dssp CSCCC-CCCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSS-CCSSCCCC---CTTCCEEECCSS-CCSCCC---CC
T ss_pred CCCCc-ccCCCCcEEECCCC-CCCCCCCc---cchhhEEECcCC-cccccCCC---CCCCCEEEccCC-ccCcCC---CC
Confidence 11122 23346999999885 45666644 378899999886 45556542 268999999986 688887 56
Q ss_pred CCCcCeEeecCCCCCccCCCCCCCCCccEEEeecCCCCCccccccccCCCceeEEEEeCCCC
Q 019416 276 ATSLQDLSVSGCPSLMSFPHGGLPPNLISLGIIDCENLIPLSQWELHKLKHLNKYTILGGLP 337 (341)
Q Consensus 276 l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~i~~~~~L~~l~l~~~C~ 337 (341)
+++|+.|+++++ .++.++. .+++|+.|++++| .++..+.+ +.++++|+.|++++ ++
T Consensus 240 l~~L~~L~Ls~N-~L~~lp~--~~~~L~~L~Ls~N-~L~~lp~~-l~~l~~L~~L~L~~-N~ 295 (622)
T 3g06_A 240 PSELKELMVSGN-RLTSLPM--LPSGLLSLSVYRN-QLTRLPES-LIHLSSETTVNLEG-NP 295 (622)
T ss_dssp CTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSS-CCCSCCGG-GGGSCTTCEEECCS-CC
T ss_pred CCcCcEEECCCC-CCCcCCc--ccccCcEEeCCCC-CCCcCCHH-HhhccccCEEEecC-CC
Confidence 689999999885 7888877 7789999999987 44455553 78899999999998 54
No 39
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.72 E-value=1.3e-15 Score=154.22 Aligned_cols=283 Identities=12% Similarity=0.051 Sum_probs=184.4
Q ss_pred ccCCCCCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchh-h-----hcccCCCCcceEeeecCCCCcccc--
Q 019416 33 ILGIRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEV-L-----LHRMAYTSLEYLEFSSCLFFSNSK-- 104 (341)
Q Consensus 33 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~-~-----~~~~~l~~L~~L~l~~~~~l~~~~-- 104 (341)
...++.+++|++|++++|......|..+.++++|++|++++| .+.+ . +.. +++|++|++++| .+..++
T Consensus 66 ~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~--L~~L~~L~Ls~N-~l~~~~~~ 141 (844)
T 3j0a_A 66 KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC-GLSDAVLKDGYFRN--LKALTRLDLSKN-QIRSLYLH 141 (844)
T ss_dssp TTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTC-CCSSCCSTTCCCSS--CSSCCEEEEESC-CCCCCCCC
T ss_pred HHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCC-CCCcccccCccccc--cCCCCEEECCCC-cccccccc
Confidence 356889999999999987544444778899999999999996 4433 2 778 999999999986 444442
Q ss_pred -CCCCCCCccEEEEeCCCChHHHHHHhhhhcc----cccceEeecCCCCccccCCC-CCcc------ccceEEeeccCCc
Q 019416 105 -QDYFPTTLKRLKICDCTNAELILKVLMDQKG----LALESLEVDGCSSLFSLPIN-QLPA------TLRHLRIVNCMNL 172 (341)
Q Consensus 105 -~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~----~~L~~L~l~~~~~l~~l~~~-~~~~------~L~~L~l~~~~~l 172 (341)
..+.+++|++|++++|..... .+..+. ++|+.|+++++......+.. ..++ +|+.|+++++.--
T Consensus 142 ~~~~~L~~L~~L~Ls~N~i~~~----~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 217 (844)
T 3j0a_A 142 PSFGKLNSLKSIDFSSNQIFLV----CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWT 217 (844)
T ss_dssp GGGGTCSSCCEEEEESSCCCCC----CSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSS
T ss_pred hhHhhCCCCCEEECCCCcCCee----CHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCc
Confidence 245689999999999864332 333332 68888888875433333221 1122 3788888765211
Q ss_pred cccCc------------ceeee----------------------C--CCCCCc-CCCccccccccc---ccccccceEee
Q 019416 173 KSLGE------------SSKIR----------------------N--CDSVVG-PEGESSLENMTS---SHTLELRELEI 212 (341)
Q Consensus 173 ~~~~~------------~l~l~----------------------~--~~~l~~-~~~~~~~~~l~~---~~~~~L~~L~l 212 (341)
...+. .+.+. + +..++. ......+..++. ..+++|+.|++
T Consensus 218 ~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 297 (844)
T 3j0a_A 218 VDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNL 297 (844)
T ss_dssp TTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEE
T ss_pred hhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEEC
Confidence 11100 11111 0 011111 000000111111 14568999999
Q ss_pred ccCcCCCcccccCCCCCCcCeEEeecCCCCcee-cCCCCCCCCcceEecccCcccccchh-hhccCCCcCeEeecCCCCC
Q 019416 213 WDCLELEFLPEDMHNFTDLNLLSISNCPSLESF-PEGGLPNTSLTSLLISECENLMSLPH-QIHKATSLQDLSVSGCPSL 290 (341)
Q Consensus 213 ~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~~l 290 (341)
+++......+..+..+++|+.|++++|. +..+ +.....+++|++|+++++ .++.++. .+..+++|+.|+++++ .+
T Consensus 298 ~~n~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l 374 (844)
T 3j0a_A 298 AYNKINKIADEAFYGLDNLQVLNLSYNL-LGELYSSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDN-AL 374 (844)
T ss_dssp ESCCCCEECTTTTTTCSSCCEEEEESCC-CSCCCSCSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETC-CS
T ss_pred CCCcCCCCChHHhcCCCCCCEEECCCCC-CCccCHHHhcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCC-CC
Confidence 9975444456788999999999999975 4444 333344679999999996 5777764 5788999999999985 56
Q ss_pred ccCCCCCCCCCccEEEeecCCCCCccccccccCCCceeEEEEeC
Q 019416 291 MSFPHGGLPPNLISLGIIDCENLIPLSQWELHKLKHLNKYTILG 334 (341)
Q Consensus 291 ~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~i~~~~~L~~l~l~~ 334 (341)
+.++. .++|+.|+++++... ..+.. ..+++.+++++
T Consensus 375 ~~i~~---~~~L~~L~l~~N~l~-~l~~~----~~~l~~L~ls~ 410 (844)
T 3j0a_A 375 TTIHF---IPSIPDIFLSGNKLV-TLPKI----NLTANLIHLSE 410 (844)
T ss_dssp CCCSS---CCSCSEEEEESCCCC-CCCCC----CTTCCEEECCS
T ss_pred CcccC---CCCcchhccCCCCcc-ccccc----ccccceeeccc
Confidence 65543 789999999987543 33322 46788888876
No 40
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.72 E-value=8.1e-16 Score=144.79 Aligned_cols=254 Identities=23% Similarity=0.225 Sum_probs=132.7
Q ss_pred CCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhhhcccCCCCcceEeeecCCCCccccCCCCCCCccEEEEeC
Q 019416 40 ETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVLLHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLKRLKICD 119 (341)
Q Consensus 40 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~ 119 (341)
++|++|++++| .++.+| ++..+++|++|++++| .+..+-.. ..+|++|++++| .+..++....+++|++|++++
T Consensus 131 ~~L~~L~L~~n-~l~~lp-~~~~l~~L~~L~l~~N-~l~~lp~~--~~~L~~L~L~~n-~l~~l~~~~~l~~L~~L~l~~ 204 (454)
T 1jl5_A 131 PLLEYLGVSNN-QLEKLP-ELQNSSFLKIIDVDNN-SLKKLPDL--PPSLEFIAAGNN-QLEELPELQNLPFLTAIYADN 204 (454)
T ss_dssp TTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSS-CCSCCCCC--CTTCCEEECCSS-CCSSCCCCTTCTTCCEEECCS
T ss_pred CCCCEEECcCC-CCCCCc-ccCCCCCCCEEECCCC-cCcccCCC--cccccEEECcCC-cCCcCccccCCCCCCEEECCC
Confidence 45666666654 334455 3555666666666663 34333333 446666666654 444455444566666666666
Q ss_pred CCChHHHHHHhhhhcccccceEeecCCCCccccCCCCCccccceEEeeccCCccccCc------ceeeeCCCCCCcCCCc
Q 019416 120 CTNAELILKVLMDQKGLALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLGE------SSKIRNCDSVVGPEGE 193 (341)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~------~l~l~~~~~l~~~~~~ 193 (341)
|. +.. +|... ++|++|+++++ .++.+|....+++|+.|+++++ .++.+|. .++++++.
T Consensus 205 N~-l~~----l~~~~-~~L~~L~l~~n-~l~~lp~~~~l~~L~~L~l~~N-~l~~l~~~~~~L~~L~l~~N~-------- 268 (454)
T 1jl5_A 205 NS-LKK----LPDLP-LSLESIVAGNN-ILEELPELQNLPFLTTIYADNN-LLKTLPDLPPSLEALNVRDNY-------- 268 (454)
T ss_dssp SC-CSS----CCCCC-TTCCEEECCSS-CCSSCCCCTTCTTCCEEECCSS-CCSSCCSCCTTCCEEECCSSC--------
T ss_pred Cc-CCc----CCCCc-CcccEEECcCC-cCCcccccCCCCCCCEEECCCC-cCCcccccccccCEEECCCCc--------
Confidence 64 222 33333 56666666664 4455554445566677766654 2333332 22222221
Q ss_pred ccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccchhhh
Q 019416 194 SSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQI 273 (341)
Q Consensus 194 ~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l 273 (341)
+..+|. .+++|+.|+++++. +..++.. .++|+.|+++++ .+..++. .+ ++|++|+++++ .++.+|..
T Consensus 269 --l~~l~~-~~~~L~~L~ls~N~-l~~l~~~---~~~L~~L~l~~N-~l~~i~~--~~-~~L~~L~Ls~N-~l~~lp~~- 335 (454)
T 1jl5_A 269 --LTDLPE-LPQSLTFLDVSENI-FSGLSEL---PPNLYYLNASSN-EIRSLCD--LP-PSLEELNVSNN-KLIELPAL- 335 (454)
T ss_dssp --CSCCCC-CCTTCCEEECCSSC-CSEESCC---CTTCCEEECCSS-CCSEECC--CC-TTCCEEECCSS-CCSCCCCC-
T ss_pred --ccccCc-ccCcCCEEECcCCc-cCcccCc---CCcCCEEECcCC-cCCcccC--Cc-CcCCEEECCCC-cccccccc-
Confidence 111111 12346666666642 3333221 146666666664 2343332 11 47888888874 46666643
Q ss_pred ccCCCcCeEeecCCCCCccCCCCCCCCCccEEEeecCCCCC--ccccccccCC-------------CceeEEEEeC
Q 019416 274 HKATSLQDLSVSGCPSLMSFPHGGLPPNLISLGIIDCENLI--PLSQWELHKL-------------KHLNKYTILG 334 (341)
Q Consensus 274 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~~~--~~~~~~i~~~-------------~~L~~l~l~~ 334 (341)
+++|+.|++++| .++.++. .+++|++|+++++.... ..+.+ +..+ ++|++|++++
T Consensus 336 --~~~L~~L~L~~N-~l~~lp~--~l~~L~~L~L~~N~l~~l~~ip~~-l~~L~~n~~~~~i~~~~~~L~~L~ls~ 405 (454)
T 1jl5_A 336 --PPRLERLIASFN-HLAEVPE--LPQNLKQLHVEYNPLREFPDIPES-VEDLRMNSHLAEVPELPQNLKQLHVET 405 (454)
T ss_dssp --CTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSCCSSCCCCCTT-CCEEECCC-------------------
T ss_pred --CCcCCEEECCCC-ccccccc--hhhhccEEECCCCCCCcCCCChHH-HHhhhhcccccccccccCcCCEEECCC
Confidence 578888888775 5677776 57788888888875444 34443 4555 6788888887
No 41
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.71 E-value=2.6e-16 Score=151.59 Aligned_cols=123 Identities=15% Similarity=0.122 Sum_probs=93.7
Q ss_pred CCCcCeEEcCCCCCCccc-cccccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccC--CCCCCC
Q 019416 39 GETLESLEIDNLSSLASF-LRSELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQ--DYFPTT 111 (341)
Q Consensus 39 ~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~ 111 (341)
.++|++|++++|. ++.+ |..+..+++|++|++++| .+..+ +.. +++|++|++++| .+..++. .+.+++
T Consensus 25 ~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~--l~~L~~L~Ls~n-~l~~~~~~~~~~l~~ 99 (549)
T 2z81_A 25 TAAMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYS--LGSLEHLDLSDN-HLSSLSSSWFGPLSS 99 (549)
T ss_dssp CTTCCEEECCSSC-CCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTT--CTTCCEEECTTS-CCCSCCHHHHTTCTT
T ss_pred CCCccEEECcCCc-cCccChhhhhcCCcccEEECCCC-CcCccChhhccc--cccCCEEECCCC-ccCccCHHHhccCCC
Confidence 3789999999875 5555 566888999999999995 55544 778 999999999986 5555543 456899
Q ss_pred ccEEEEeCCCChH-HHHHHhhhhcc--cccceEeecCCCCccccCCC--CCccccceEEeeccC
Q 019416 112 LKRLKICDCTNAE-LILKVLMDQKG--LALESLEVDGCSSLFSLPIN--QLPATLRHLRIVNCM 170 (341)
Q Consensus 112 L~~L~l~~~~~~~-~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~ 170 (341)
|++|++++|.... . .|..++ ++|++|+++++..++.++.. ..+++|+.|+++++.
T Consensus 100 L~~L~Ls~n~l~~~~----~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~ 159 (549)
T 2z81_A 100 LKYLNLMGNPYQTLG----VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS 159 (549)
T ss_dssp CCEEECTTCCCSSSC----SSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred CcEEECCCCcccccc----hhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc
Confidence 9999999986332 2 333444 89999999997667777643 556788899888754
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.71 E-value=1.4e-15 Score=137.19 Aligned_cols=257 Identities=13% Similarity=0.134 Sum_probs=183.5
Q ss_pred CCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccc-cC-CCCCCC
Q 019416 38 TGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNS-KQ-DYFPTT 111 (341)
Q Consensus 38 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~-~~-~~~~~~ 111 (341)
...++++++++++ .++.+|..+. ++|+.|+++++ .+..+ +.. +++|++|++++| .+..+ +. ...+++
T Consensus 29 c~c~l~~l~~~~~-~l~~lp~~~~--~~l~~L~L~~n-~i~~~~~~~~~~--l~~L~~L~L~~n-~l~~~~~~~~~~l~~ 101 (330)
T 1xku_A 29 CQCHLRVVQCSDL-GLEKVPKDLP--PDTALLDLQNN-KITEIKDGDFKN--LKNLHTLILINN-KISKISPGAFAPLVK 101 (330)
T ss_dssp CEEETTEEECTTS-CCCSCCCSCC--TTCCEEECCSS-CCCCBCTTTTTT--CTTCCEEECCSS-CCCCBCTTTTTTCTT
T ss_pred CcCCCeEEEecCC-CccccCccCC--CCCeEEECCCC-cCCEeChhhhcc--CCCCCEEECCCC-cCCeeCHHHhcCCCC
Confidence 3447999999975 5667776443 79999999995 55554 778 999999999986 55555 32 445899
Q ss_pred ccEEEEeCCCChHHHHHHhhhhcccccceEeecCCCCccccCCC--CCccccceEEeeccCCccccCcceeeeCCCCCCc
Q 019416 112 LKRLKICDCTNAELILKVLMDQKGLALESLEVDGCSSLFSLPIN--QLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVG 189 (341)
Q Consensus 112 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~ 189 (341)
|++|++++|. +.. +|..+.++|++|+++++ .++.++.. ..+++|+.|+++++. +...+.
T Consensus 102 L~~L~Ls~n~-l~~----l~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~------------ 162 (330)
T 1xku_A 102 LERLYLSKNQ-LKE----LPEKMPKTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNP-LKSSGI------------ 162 (330)
T ss_dssp CCEEECCSSC-CSB----CCSSCCTTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSC-CCGGGB------------
T ss_pred CCEEECCCCc-CCc----cChhhcccccEEECCCC-cccccCHhHhcCCccccEEECCCCc-CCccCc------------
Confidence 9999999986 445 77666689999999884 66666543 556899999998753 221100
Q ss_pred CCCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecC-CCCCCCCcceEecccCccccc
Q 019416 190 PEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPE-GGLPNTSLTSLLISECENLMS 268 (341)
Q Consensus 190 ~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~l~~~~~l~~ 268 (341)
...+ + ..+++|+.|+++++ .+..+|..+. ++|+.|+++++. ++.++. ....+++|++|+++++ .++.
T Consensus 163 --~~~~---~--~~l~~L~~L~l~~n-~l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~ 230 (330)
T 1xku_A 163 --ENGA---F--QGMKKLSYIRIADT-NITTIPQGLP--PSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFN-SISA 230 (330)
T ss_dssp --CTTG---G--GGCTTCCEEECCSS-CCCSCCSSCC--TTCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSS-CCCE
T ss_pred --Chhh---c--cCCCCcCEEECCCC-ccccCCcccc--ccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCC-cCce
Confidence 0001 1 13457999999986 4566776553 799999999975 555543 2334579999999996 5776
Q ss_pred chh-hhccCCCcCeEeecCCCCCccCCCC-CCCCCccEEEeecCCCCCccccccc------cCCCceeEEEEeC
Q 019416 269 LPH-QIHKATSLQDLSVSGCPSLMSFPHG-GLPPNLISLGIIDCENLIPLSQWEL------HKLKHLNKYTILG 334 (341)
Q Consensus 269 l~~-~l~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~c~~~~~~~~~~i------~~~~~L~~l~l~~ 334 (341)
++. .+..+++|++|++++| .+..++.. ...++|++|+++++..-. .+...+ .....++.+++.+
T Consensus 231 ~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~i~~-~~~~~f~~~~~~~~~~~l~~l~l~~ 302 (330)
T 1xku_A 231 VDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNNISA-IGSNDFCPPGYNTKKASYSGVSLFS 302 (330)
T ss_dssp ECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSCCCC-CCTTSSSCSSCCTTSCCCSEEECCS
T ss_pred eChhhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCCcCCc-cChhhcCCcccccccccccceEeec
Confidence 654 7889999999999985 67788765 446899999999985433 111112 2347888999988
No 43
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.71 E-value=5e-16 Score=146.22 Aligned_cols=213 Identities=19% Similarity=0.206 Sum_probs=143.7
Q ss_pred CCcCeEEcCCCCCCccc-cccccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccC--CCCCCCc
Q 019416 40 ETLESLEIDNLSSLASF-LRSELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQ--DYFPTTL 112 (341)
Q Consensus 40 ~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L 112 (341)
+++++|+++++. ++.+ +..+..+++|++|+++++ .+..+ +.. +++|++|++++| .+..++. ...+++|
T Consensus 75 ~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~--l~~L~~L~L~~n-~l~~~~~~~~~~l~~L 149 (452)
T 3zyi_A 75 SNTRYLNLMENN-IQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNG--LASLNTLELFDN-WLTVIPSGAFEYLSKL 149 (452)
T ss_dssp TTCSEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTT--CTTCCEEECCSS-CCSBCCTTTSSSCTTC
T ss_pred CCccEEECcCCc-CceECHHHcCCCCCCCEEECCCC-ccCCcChhhccC--cccCCEEECCCC-cCCccChhhhcccCCC
Confidence 578888888764 4444 556777888888888884 45444 677 888888888875 5666654 3347888
Q ss_pred cEEEEeCCCChHHHHHHhhhhcc---cccceEeecCCCCccccCCC--CCccccceEEeeccCCccccCcceeeeCCCCC
Q 019416 113 KRLKICDCTNAELILKVLMDQKG---LALESLEVDGCSSLFSLPIN--QLPATLRHLRIVNCMNLKSLGESSKIRNCDSV 187 (341)
Q Consensus 113 ~~L~l~~~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l 187 (341)
++|++++|. +.. ++.... ++|++|++++|+.++.++.. ..+++|+.|+++++ .+..+|.
T Consensus 150 ~~L~L~~N~-l~~----~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~---------- 213 (452)
T 3zyi_A 150 RELWLRNNP-IES----IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMPN---------- 213 (452)
T ss_dssp CEEECCSCC-CCE----ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCCC----------
T ss_pred CEEECCCCC-cce----eCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-ccccccc----------
Confidence 888888876 333 443222 88888888887788777754 45678888888775 3443332
Q ss_pred CcCCCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCC-CCCCCCcceEecccCccc
Q 019416 188 VGPEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEG-GLPNTSLTSLLISECENL 266 (341)
Q Consensus 188 ~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~L~l~~~~~l 266 (341)
+. .+++|+.|+++++......|..+..+++|+.|+++++. +..++.. ...+++|++|+++++ .+
T Consensus 214 -----------~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l 278 (452)
T 3zyi_A 214 -----------LT--PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ-VSLIERNAFDGLASLVELNLAHN-NL 278 (452)
T ss_dssp -----------CT--TCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CC
T ss_pred -----------cc--ccccccEEECcCCcCcccCcccccCccCCCEEEeCCCc-CceECHHHhcCCCCCCEEECCCC-cC
Confidence 11 33358888888865444446777788888888888754 4444432 233468888888875 57
Q ss_pred ccchh-hhccCCCcCeEeecCCC
Q 019416 267 MSLPH-QIHKATSLQDLSVSGCP 288 (341)
Q Consensus 267 ~~l~~-~l~~l~~L~~L~l~~c~ 288 (341)
+.++. .+..+++|+.|++++++
T Consensus 279 ~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 279 SSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp SCCCTTSSTTCTTCCEEECCSSC
T ss_pred CccChHHhccccCCCEEEccCCC
Confidence 77664 45677888888887653
No 44
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.70 E-value=7e-18 Score=151.51 Aligned_cols=125 Identities=11% Similarity=0.045 Sum_probs=81.2
Q ss_pred ccccceEeeccCcCCCcccccC-CCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccchhhhccCCCcCeE
Q 019416 204 TLELRELEIWDCLELEFLPEDM-HNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQIHKATSLQDL 282 (341)
Q Consensus 204 ~~~L~~L~l~~~~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L 282 (341)
+++|+.|+++++......+..+ ..+++|++|++++|. ++.++.... +++|++|+++++ .++.+|..+..+++|+.|
T Consensus 143 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~-l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L 219 (317)
T 3o53_A 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQVV-FAKLKTLDLSSN-KLAFMGPEFQSAAGVTWI 219 (317)
T ss_dssp GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECCCC-CTTCCEEECCSS-CCCEECGGGGGGTTCSEE
T ss_pred cCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Ccccccccc-cccCCEEECCCC-cCCcchhhhcccCcccEE
Confidence 3357777777754322233444 356788888888754 555544332 468888888875 577777777788888888
Q ss_pred eecCCCCCccCCCC-CCCCCccEEEeecCCCC-CccccccccCCCceeEEEEe
Q 019416 283 SVSGCPSLMSFPHG-GLPPNLISLGIIDCENL-IPLSQWELHKLKHLNKYTIL 333 (341)
Q Consensus 283 ~l~~c~~l~~~~~~-~~~~~L~~L~l~~c~~~-~~~~~~~i~~~~~L~~l~l~ 333 (341)
+++++ .++.++.. ...++|+.|++++++.. ...+.| +..+++|+.+++.
T Consensus 220 ~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~-~~~~~~L~~l~l~ 270 (317)
T 3o53_A 220 SLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQ 270 (317)
T ss_dssp ECTTS-CCCEECTTCCCCTTCCEEECTTCCCBHHHHHHH-HHTCHHHHHHHHH
T ss_pred ECcCC-cccchhhHhhcCCCCCEEEccCCCccCcCHHHH-HhccccceEEECC
Confidence 88774 66677654 34678888888887655 233443 5666666666555
No 45
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.70 E-value=7.3e-16 Score=144.59 Aligned_cols=214 Identities=16% Similarity=0.227 Sum_probs=144.1
Q ss_pred CCCcCeEEcCCCCCCccc-cccccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccC--CCCCCC
Q 019416 39 GETLESLEIDNLSSLASF-LRSELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQ--DYFPTT 111 (341)
Q Consensus 39 ~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~ 111 (341)
.+++++|+++++ .++.+ +..+..+++|++|++++| .+..+ +.. +++|++|++++| .+..++. ...+++
T Consensus 63 ~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~--l~~L~~L~L~~n-~l~~~~~~~~~~l~~ 137 (440)
T 3zyj_A 63 STNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNG--LANLNTLELFDN-RLTTIPNGAFVYLSK 137 (440)
T ss_dssp CTTCSEEECCSC-CCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTT--CSSCCEEECCSS-CCSSCCTTTSCSCSS
T ss_pred CCCCcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccC--CccCCEEECCCC-cCCeeCHhHhhcccc
Confidence 366888888876 44554 355777888888888884 45443 777 888888888875 6666654 344788
Q ss_pred ccEEEEeCCCChHHHHHHhhhh-cc--cccceEeecCCCCccccCCC--CCccccceEEeeccCCccccCcceeeeCCCC
Q 019416 112 LKRLKICDCTNAELILKVLMDQ-KG--LALESLEVDGCSSLFSLPIN--QLPATLRHLRIVNCMNLKSLGESSKIRNCDS 186 (341)
Q Consensus 112 L~~L~l~~~~~~~~~~~~~~~~-~~--~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~ 186 (341)
|++|++++|. +.. ++.. +. ++|++|++.+++.+..++.. ..+++|+.|+++++ .++.+|.
T Consensus 138 L~~L~L~~N~-i~~----~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~--------- 202 (440)
T 3zyj_A 138 LKELWLRNNP-IES----IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPN--------- 202 (440)
T ss_dssp CCEEECCSCC-CCE----ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCCC---------
T ss_pred CceeeCCCCc-ccc----cCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCccccc---------
Confidence 8888888876 333 4432 22 88888888887777777654 45678888888775 3444432
Q ss_pred CCcCCCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCC-CCCCCcceEecccCcc
Q 019416 187 VVGPEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGG-LPNTSLTSLLISECEN 265 (341)
Q Consensus 187 l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~-~~~~~L~~L~l~~~~~ 265 (341)
+. .+++|+.|+++++.-....|..+..+++|+.|+++++ .+..++... ..+++|++|+++++ .
T Consensus 203 ------------~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~ 266 (440)
T 3zyj_A 203 ------------LT--PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHN-N 266 (440)
T ss_dssp ------------CT--TCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTSSTTCTTCCEEECTTS-C
T ss_pred ------------cC--CCcccCEEECCCCccCccChhhhccCccCCEEECCCC-ceeEEChhhhcCCCCCCEEECCCC-C
Confidence 11 3335888888886433333667777888888888875 355554432 23468888888875 5
Q ss_pred cccchh-hhccCCCcCeEeecCCC
Q 019416 266 LMSLPH-QIHKATSLQDLSVSGCP 288 (341)
Q Consensus 266 l~~l~~-~l~~l~~L~~L~l~~c~ 288 (341)
++.++. .+..+++|+.|++++++
T Consensus 267 l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 267 LTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCccChhHhccccCCCEEEcCCCC
Confidence 777664 45777888888887643
No 46
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.70 E-value=1.7e-15 Score=146.45 Aligned_cols=120 Identities=15% Similarity=0.126 Sum_probs=89.9
Q ss_pred CCCcCeEEcCCCCCCcccc-ccccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccCCCCCCCcc
Q 019416 39 GETLESLEIDNLSSLASFL-RSELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLK 113 (341)
Q Consensus 39 ~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~ 113 (341)
.++|++|++++|. ++.++ ..+..+++|++|++++| .+..+ +.. +++|++|++++| .+..+|.. .+++|+
T Consensus 51 ~~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~--l~~L~~L~Ls~N-~l~~lp~~-~l~~L~ 124 (562)
T 3a79_B 51 PPRTKALSLSQNS-ISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLF--NQDLEYLDVSHN-RLQNISCC-PMASLR 124 (562)
T ss_dssp CTTCCEEECCSSC-CCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTT--CTTCCEEECTTS-CCCEECSC-CCTTCS
T ss_pred CCCcCEEECCCCC-ccccChhhhccCCCccEEECCCC-CCCcCCHHHhCC--CCCCCEEECCCC-cCCccCcc-ccccCC
Confidence 3789999999874 55554 56888999999999995 55554 778 999999999986 67788876 789999
Q ss_pred EEEEeCCCChH-HHHHHhhhhcc--cccceEeecCCCCccccCCCCCcccc--ceEEeeccC
Q 019416 114 RLKICDCTNAE-LILKVLMDQKG--LALESLEVDGCSSLFSLPINQLPATL--RHLRIVNCM 170 (341)
Q Consensus 114 ~L~l~~~~~~~-~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~~~~~~L--~~L~l~~~~ 170 (341)
+|++++|.... . +|..++ ++|++|++++ +.++.... ..+++| +.|+++++.
T Consensus 125 ~L~Ls~N~l~~l~----~p~~~~~l~~L~~L~L~~-n~l~~~~~-~~l~~L~L~~L~L~~n~ 180 (562)
T 3a79_B 125 HLDLSFNDFDVLP----VCKEFGNLTKLTFLGLSA-AKFRQLDL-LPVAHLHLSCILLDLVS 180 (562)
T ss_dssp EEECCSSCCSBCC----CCGGGGGCTTCCEEEEEC-SBCCTTTT-GGGTTSCEEEEEEEESS
T ss_pred EEECCCCCccccC----chHhhcccCcccEEecCC-CccccCch-hhhhhceeeEEEeeccc
Confidence 99999987433 1 234454 9999999988 45554322 233455 888888764
No 47
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.70 E-value=1.8e-15 Score=147.83 Aligned_cols=123 Identities=15% Similarity=0.104 Sum_probs=86.4
Q ss_pred CCCchhhhhhcccCCC--ccc-cCCCCCCCcCeEEcCCCCCCccccc-cccCCCCccEEeccCCCCchhh----hcccCC
Q 019416 15 APVPKNFLALALFPDE--DKI-LGIRTGETLESLEIDNLSSLASFLR-SELAATTVKQLKINKCPDLEVL----LHRMAY 86 (341)
Q Consensus 15 ~~~~~~~~~l~~~~~~--~~~-~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~----~~~~~l 86 (341)
..+|.+...|++-.+. .+. ..|..+++|++|+|++| .++.+++ ++.++++|++|++++| ++..+ ++. +
T Consensus 48 ~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~--L 123 (635)
T 4g8a_A 48 DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSG--L 123 (635)
T ss_dssp SSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTC-CCCEECGGGGTT--C
T ss_pred CCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcC--C
Confidence 3456667777775542 122 35788999999999986 5666654 5778999999999984 56554 778 8
Q ss_pred CCcceEeeecCCCCccccC--CCCCCCccEEEEeCCCChH-HHHHHhhhhcc--cccceEeecCC
Q 019416 87 TSLEYLEFSSCLFFSNSKQ--DYFPTTLKRLKICDCTNAE-LILKVLMDQKG--LALESLEVDGC 146 (341)
Q Consensus 87 ~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~--~~L~~L~l~~~ 146 (341)
++|++|++++| .+..++. .+.+++|++|++++|.... . .|..++ ++|++|+++++
T Consensus 124 ~~L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~----~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 124 SSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFK----LPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp TTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCC----CCGGGGGCTTCCEEECCSS
T ss_pred CCCCEEECCCC-cCCCCChhhhhcCcccCeeccccCccccCC----CchhhccchhhhhhcccCc
Confidence 99999999886 6666664 3447889999998876322 1 334433 78888888763
No 48
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.69 E-value=1.6e-16 Score=149.53 Aligned_cols=242 Identities=22% Similarity=0.187 Sum_probs=106.1
Q ss_pred cccCCCCCCCcCeEEcCCCCCCccccccccCCCCc-------------cEEeccCCCCchhhhcccCCCCcceEeeecCC
Q 019416 32 KILGIRTGETLESLEIDNLSSLASFLRSELAATTV-------------KQLKINKCPDLEVLLHRMAYTSLEYLEFSSCL 98 (341)
Q Consensus 32 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L-------------~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~ 98 (341)
++..++.+++|++|++++|.....+|.+++.+++| ++|++++| .+..+-.. .++|++|+++++
T Consensus 26 iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~-~l~~lp~~--~~~L~~L~l~~n- 101 (454)
T 1jl5_A 26 MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL-GLSSLPEL--PPHLESLVASCN- 101 (454)
T ss_dssp --------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS-CCSCCCSC--CTTCSEEECCSS-
T ss_pred CChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC-ccccCCCC--cCCCCEEEccCC-
Confidence 33445566666666666554333455555555443 55555553 23333223 455666666553
Q ss_pred CCccccCCCCCCCccEEEEeCCCChHHHHHHhhhhcccccceEeecCCCCccccCCCCCccccceEEeeccCCccccCc-
Q 019416 99 FFSNSKQDYFPTTLKRLKICDCTNAELILKVLMDQKGLALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLGE- 177 (341)
Q Consensus 99 ~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~- 177 (341)
.+..+|. .+++|++|++++|. +.. ++... ++|++|+++++ .++.+|....+++|++|+++++ .++.+|.
T Consensus 102 ~l~~lp~--~~~~L~~L~l~~n~-l~~----l~~~~-~~L~~L~L~~n-~l~~lp~~~~l~~L~~L~l~~N-~l~~lp~~ 171 (454)
T 1jl5_A 102 SLTELPE--LPQSLKSLLVDNNN-LKA----LSDLP-PLLEYLGVSNN-QLEKLPELQNSSFLKIIDVDNN-SLKKLPDL 171 (454)
T ss_dssp CCSSCCC--CCTTCCEEECCSSC-CSC----CCSCC-TTCCEEECCSS-CCSSCCCCTTCTTCCEEECCSS-CCSCCCCC
T ss_pred cCCcccc--ccCCCcEEECCCCc-cCc----ccCCC-CCCCEEECcCC-CCCCCcccCCCCCCCEEECCCC-cCcccCCC
Confidence 4444442 23556666666653 222 32221 45666666553 4444553344556666666554 2333332
Q ss_pred -----ceeeeCCCCCCc-CCCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCC
Q 019416 178 -----SSKIRNCDSVVG-PEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLP 251 (341)
Q Consensus 178 -----~l~l~~~~~l~~-~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 251 (341)
+++++++. ++. + + + ..+++|+.|+++++. +..+|... ++|++|++++| .+..+|. ...
T Consensus 172 ~~~L~~L~L~~n~-l~~l~----~---~--~~l~~L~~L~l~~N~-l~~l~~~~---~~L~~L~l~~n-~l~~lp~-~~~ 235 (454)
T 1jl5_A 172 PPSLEFIAAGNNQ-LEELP----E---L--QNLPFLTAIYADNNS-LKKLPDLP---LSLESIVAGNN-ILEELPE-LQN 235 (454)
T ss_dssp CTTCCEEECCSSC-CSSCC----C---C--TTCTTCCEEECCSSC-CSSCCCCC---TTCCEEECCSS-CCSSCCC-CTT
T ss_pred cccccEEECcCCc-CCcCc----c---c--cCCCCCCEEECCCCc-CCcCCCCc---CcccEEECcCC-cCCcccc-cCC
Confidence 11111111 000 0 0 0 022245555555532 23333222 35555555554 2333432 222
Q ss_pred CCCcceEecccCcccccchhhhccCCCcCeEeecCCCCCccCCCCCCCCCccEEEeecC
Q 019416 252 NTSLTSLLISECENLMSLPHQIHKATSLQDLSVSGCPSLMSFPHGGLPPNLISLGIIDC 310 (341)
Q Consensus 252 ~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c 310 (341)
+++|++|+++++ .++.+|. .+++|+.|++++| .+..++. .+++|++|++++|
T Consensus 236 l~~L~~L~l~~N-~l~~l~~---~~~~L~~L~l~~N-~l~~l~~--~~~~L~~L~ls~N 287 (454)
T 1jl5_A 236 LPFLTTIYADNN-LLKTLPD---LPPSLEALNVRDN-YLTDLPE--LPQSLTFLDVSEN 287 (454)
T ss_dssp CTTCCEEECCSS-CCSSCCS---CCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSS
T ss_pred CCCCCEEECCCC-cCCcccc---cccccCEEECCCC-cccccCc--ccCcCCEEECcCC
Confidence 345555555553 3444442 2245555555553 3444433 3455666666554
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.69 E-value=1.5e-15 Score=137.16 Aligned_cols=259 Identities=13% Similarity=0.116 Sum_probs=174.8
Q ss_pred CchhhhhhcccCCC--cc-ccCCCCCCCcCeEEcCCCCCCccc-cccccCCCCccEEeccCCCCchhh-hcccCCCCcce
Q 019416 17 VPKNFLALALFPDE--DK-ILGIRTGETLESLEIDNLSSLASF-LRSELAATTVKQLKINKCPDLEVL-LHRMAYTSLEY 91 (341)
Q Consensus 17 ~~~~~~~l~~~~~~--~~-~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~l~~L~~ 91 (341)
+++.+..+.+..+. .. ...+..+++|++|++++|. ++.+ |..+..+++|++|++++ +.+..+ ... .++|++
T Consensus 52 ~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~~--~~~L~~ 127 (332)
T 2ft3_A 52 ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLYISK-NHLVEIPPNL--PSSLVE 127 (332)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGSTTCTTCCEEECCS-SCCCSCCSSC--CTTCCE
T ss_pred CCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc-cCccCHhHhhCcCCCCEEECCC-CcCCccCccc--cccCCE
Confidence 34556666664442 12 2357889999999999874 5555 66788899999999998 456665 445 689999
Q ss_pred EeeecCCCCccccC--CCCCCCccEEEEeCCCChH--HHHHHhhhhcc-cccceEeecCCCCccccCCCCCccccceEEe
Q 019416 92 LEFSSCLFFSNSKQ--DYFPTTLKRLKICDCTNAE--LILKVLMDQKG-LALESLEVDGCSSLFSLPINQLPATLRHLRI 166 (341)
Q Consensus 92 L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~-~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l 166 (341)
|+++++ .+..++. ...+++|++|+++++.... . .+..+. .+|++|++++ +.++.+|.. .+++|+.|++
T Consensus 128 L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~~~l~L~~L~l~~-n~l~~l~~~-~~~~L~~L~l 200 (332)
T 2ft3_A 128 LRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLENSGF----EPGAFDGLKLNYLRISE-AKLTGIPKD-LPETLNELHL 200 (332)
T ss_dssp EECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBGGGS----CTTSSCSCCCSCCBCCS-SBCSSCCSS-SCSSCSCCBC
T ss_pred EECCCC-ccCccCHhHhCCCccCCEEECCCCccccCCC----CcccccCCccCEEECcC-CCCCccCcc-ccCCCCEEEC
Confidence 999986 6666664 3458999999999987422 2 233332 4899999988 467777654 3378999999
Q ss_pred eccCCccccCcceeeeCCCCCCcCCCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceec
Q 019416 167 VNCMNLKSLGESSKIRNCDSVVGPEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFP 246 (341)
Q Consensus 167 ~~~~~l~~~~~~l~l~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~ 246 (341)
+++. +..++.. . +. .+++|+.|+++++.-....+..+..+++|+.|++++| .+..+|
T Consensus 201 ~~n~-i~~~~~~----------------~---l~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp 257 (332)
T 2ft3_A 201 DHNK-IQAIELE----------------D---LL--RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLSRVP 257 (332)
T ss_dssp CSSC-CCCCCTT----------------S---ST--TCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS-CCCBCC
T ss_pred CCCc-CCccCHH----------------H---hc--CCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC-cCeecC
Confidence 8753 3332210 0 11 3446999999986433333457788899999999986 466777
Q ss_pred CCCCCCCCcceEecccCcccccchh-hhcc------CCCcCeEeecCCCCCc--cCCCC--CCCCCccEEEeecCC
Q 019416 247 EGGLPNTSLTSLLISECENLMSLPH-QIHK------ATSLQDLSVSGCPSLM--SFPHG--GLPPNLISLGIIDCE 311 (341)
Q Consensus 247 ~~~~~~~~L~~L~l~~~~~l~~l~~-~l~~------l~~L~~L~l~~c~~l~--~~~~~--~~~~~L~~L~l~~c~ 311 (341)
.....+++|++|+++++ .++.++. .+.. .++|+.+++.+++ +. .++.. ...++|+.+++.++.
T Consensus 258 ~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~-~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 258 AGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNP-VPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp TTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSS-SCGGGSCGGGGTTBCCSTTEEC----
T ss_pred hhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCc-ccccccCcccccccchhhhhhccccc
Confidence 65555679999999985 5777654 2222 4678999998864 43 33322 235788888887764
No 50
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.68 E-value=2.8e-15 Score=140.54 Aligned_cols=232 Identities=16% Similarity=0.206 Sum_probs=171.7
Q ss_pred CcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccC--CCCCCCccE
Q 019416 41 TLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQ--DYFPTTLKR 114 (341)
Q Consensus 41 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~ 114 (341)
....++..+ ..++.+|..+. ++++.|+++++ .+..+ +.. +++|++|++++| .+..++. ...+++|++
T Consensus 44 ~~~~v~c~~-~~l~~iP~~~~--~~l~~L~L~~n-~i~~~~~~~~~~--l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~ 116 (440)
T 3zyj_A 44 QFSKVICVR-KNLREVPDGIS--TNTRLLNLHEN-QIQIIKVNSFKH--LRHLEILQLSRN-HIRTIEIGAFNGLANLNT 116 (440)
T ss_dssp TSCEEECCS-CCCSSCCSCCC--TTCSEEECCSC-CCCEECTTTTSS--CSSCCEEECCSS-CCCEECGGGGTTCSSCCE
T ss_pred CCCEEEeCC-CCcCcCCCCCC--CCCcEEEccCC-cCCeeCHHHhhC--CCCCCEEECCCC-cCCccChhhccCCccCCE
Confidence 356777765 56777776543 79999999994 56554 888 999999999986 5666653 344799999
Q ss_pred EEEeCCCChHHHHHHhhhh-cc--cccceEeecCCCCccccCCC--CCccccceEEeeccCCccccCcceeeeCCCCCCc
Q 019416 115 LKICDCTNAELILKVLMDQ-KG--LALESLEVDGCSSLFSLPIN--QLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVG 189 (341)
Q Consensus 115 L~l~~~~~~~~~~~~~~~~-~~--~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~ 189 (341)
|++++|. +.. ++.. +. ++|++|++++ +.++.++.. ..+++|+.|+++++..+..++..
T Consensus 117 L~L~~n~-l~~----~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~----------- 179 (440)
T 3zyj_A 117 LELFDNR-LTT----IPNGAFVYLSKLKELWLRN-NPIESIPSYAFNRIPSLRRLDLGELKRLSYISEG----------- 179 (440)
T ss_dssp EECCSSC-CSS----CCTTTSCSCSSCCEEECCS-CCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT-----------
T ss_pred EECCCCc-CCe----eCHhHhhccccCceeeCCC-CcccccCHHHhhhCcccCEeCCCCCCCcceeCcc-----------
Confidence 9999986 444 5543 33 8999999988 467777654 45789999999987776655431
Q ss_pred CCCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecC-CCCCCCCcceEecccCccccc
Q 019416 190 PEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPE-GGLPNTSLTSLLISECENLMS 268 (341)
Q Consensus 190 ~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~l~~~~~l~~ 268 (341)
. + ..+++|+.|+++++ .+..+| .+..+++|+.|+++++ .+..++. ....+++|++|+++++ .++.
T Consensus 180 -----~---~--~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~ 245 (440)
T 3zyj_A 180 -----A---F--EGLSNLRYLNLAMC-NLREIP-NLTPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQS-QIQV 245 (440)
T ss_dssp -----T---T--TTCSSCCEEECTTS-CCSSCC-CCTTCSSCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTC-CCCE
T ss_pred -----h---h--hcccccCeecCCCC-cCcccc-ccCCCcccCEEECCCC-ccCccChhhhccCccCCEEECCCC-ceeE
Confidence 0 1 13447999999986 556666 4677899999999997 4555544 3344679999999986 5776
Q ss_pred ch-hhhccCCCcCeEeecCCCCCccCCCCCC--CCCccEEEeecCC
Q 019416 269 LP-HQIHKATSLQDLSVSGCPSLMSFPHGGL--PPNLISLGIIDCE 311 (341)
Q Consensus 269 l~-~~l~~l~~L~~L~l~~c~~l~~~~~~~~--~~~L~~L~l~~c~ 311 (341)
++ ..+..+++|+.|+++++ .++.++...+ .++|+.|++.+++
T Consensus 246 ~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 246 IERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp ECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred EChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 64 46788999999999884 6777776533 5899999998864
No 51
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.68 E-value=5.8e-16 Score=149.67 Aligned_cols=249 Identities=17% Similarity=0.125 Sum_probs=172.0
Q ss_pred cCCCCCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh-hcccCCCCcceEeeecCCCCccccCCCCCCCc
Q 019416 34 LGIRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL-LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTL 112 (341)
Q Consensus 34 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L 112 (341)
..+..+++|++|+++++ .++.+|..+..+ +|++|++++| .+..+ ... +++|+.|+++++......+. ..+++|
T Consensus 276 ~~~~~l~~L~~L~l~~~-~l~~l~~~~~~~-~L~~L~l~~n-~~~~l~~~~--l~~L~~L~l~~n~~~~~~~~-~~~~~L 349 (570)
T 2z63_A 276 DLFNCLTNVSSFSLVSV-TIERVKDFSYNF-GWQHLELVNC-KFGQFPTLK--LKSLKRLTFTSNKGGNAFSE-VDLPSL 349 (570)
T ss_dssp TTTGGGTTCSEEEEESC-EECSCCBCCSCC-CCSEEEEESC-BCSSCCBCB--CSSCCEEEEESCBSCCBCCC-CBCTTC
T ss_pred hhhcCcCcccEEEecCc-cchhhhhhhccC-CccEEeeccC-cccccCccc--ccccCEEeCcCCcccccccc-ccCCCC
Confidence 44566788888888876 445677767777 8888888885 44444 556 88888888888654444433 557888
Q ss_pred cEEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCCC-CCccccceEEeeccCCccccCcceeeeCCCCCCc
Q 019416 113 KRLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPIN-QLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVG 189 (341)
Q Consensus 113 ~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~ 189 (341)
++|++++|...... ..+..+. ++|++|+++++ .+..++.. ..+++|+.|+++++. +...+..
T Consensus 350 ~~L~l~~n~l~~~~--~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~----------- 414 (570)
T 2z63_A 350 EFLDLSRNGLSFKG--CCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHSN-LKQMSEF----------- 414 (570)
T ss_dssp CEEECCSSCCBEEE--EEEHHHHTCSCCCEEECCSC-SEEEEEEEEETCTTCCEEECTTSE-EESCTTS-----------
T ss_pred CEEeCcCCccCccc--cccccccccCccCEEECCCC-ccccccccccccCCCCEEEccCCc-cccccch-----------
Confidence 88888887632110 0022222 88888888874 45554433 455788888887753 2211100
Q ss_pred CCCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCC-ceecCCCCCCCCcceEecccCccccc
Q 019416 190 PEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSL-ESFPEGGLPNTSLTSLLISECENLMS 268 (341)
Q Consensus 190 ~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l-~~~~~~~~~~~~L~~L~l~~~~~l~~ 268 (341)
. . + ..+++|+.|++++|......|..+..+++|+.|++++|.-. ..+|.....+++|++|++++|. ++.
T Consensus 415 --~--~---~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~ 484 (570)
T 2z63_A 415 --S--V---F--LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQ 484 (570)
T ss_dssp --C--T---T--TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCE
T ss_pred --h--h---h--hcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc-ccc
Confidence 0 0 1 14457999999998765666788889999999999997533 3566555556799999999974 666
Q ss_pred c-hhhhccCCCcCeEeecCCCCCccCCCC--CCCCCccEEEeecCCCCC
Q 019416 269 L-PHQIHKATSLQDLSVSGCPSLMSFPHG--GLPPNLISLGIIDCENLI 314 (341)
Q Consensus 269 l-~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~c~~~~ 314 (341)
+ |..+..+++|++|++++| .+..++.. ...++|++|++++++...
T Consensus 485 ~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 485 LSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp ECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCcccC
Confidence 5 778899999999999986 67777654 336899999999976443
No 52
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.68 E-value=3.6e-15 Score=145.13 Aligned_cols=93 Identities=27% Similarity=0.276 Sum_probs=51.1
Q ss_pred ccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccchhhhccCCCcCeEeec
Q 019416 206 ELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQIHKATSLQDLSVS 285 (341)
Q Consensus 206 ~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~ 285 (341)
+|+.|+++++ .+..+|.. +++|+.|++++| .++.+| .. +++|++|+++++ .++.+|. .+++|+.|+++
T Consensus 202 ~L~~L~L~~N-~l~~l~~~---~~~L~~L~Ls~N-~L~~lp-~~--l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls 269 (622)
T 3g06_A 202 ELYKLWAYNN-RLTSLPAL---PSGLKELIVSGN-RLTSLP-VL--PSELKELMVSGN-RLTSLPM---LPSGLLSLSVY 269 (622)
T ss_dssp TCCEEECCSS-CCSSCCCC---CTTCCEEECCSS-CCSCCC-CC--CTTCCEEECCSS-CCSCCCC---CCTTCCEEECC
T ss_pred hhhEEECcCC-cccccCCC---CCCCCEEEccCC-ccCcCC-CC--CCcCcEEECCCC-CCCcCCc---ccccCcEEeCC
Confidence 4666666664 33444432 256666666664 344444 11 246666666664 4666654 45566666666
Q ss_pred CCCCCccCCCC-CCCCCccEEEeecCC
Q 019416 286 GCPSLMSFPHG-GLPPNLISLGIIDCE 311 (341)
Q Consensus 286 ~c~~l~~~~~~-~~~~~L~~L~l~~c~ 311 (341)
+| .++.+|.. ...++|+.|++.+++
T Consensus 270 ~N-~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 270 RN-QLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp SS-CCCSCCGGGGGSCTTCEEECCSCC
T ss_pred CC-CCCcCCHHHhhccccCEEEecCCC
Confidence 53 45555543 234566666666654
No 53
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.67 E-value=3.4e-15 Score=140.50 Aligned_cols=231 Identities=15% Similarity=0.205 Sum_probs=164.6
Q ss_pred cCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccC--CCCCCCccEE
Q 019416 42 LESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQ--DYFPTTLKRL 115 (341)
Q Consensus 42 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L 115 (341)
...++.++ ..++.+|..+. ++++.|+++++ .+..+ +.. +++|++|+++++ .+..++. ...+++|++|
T Consensus 56 ~~~v~c~~-~~l~~iP~~~~--~~l~~L~L~~n-~i~~~~~~~~~~--l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L 128 (452)
T 3zyi_A 56 FSKVVCTR-RGLSEVPQGIP--SNTRYLNLMEN-NIQMIQADTFRH--LHHLEVLQLGRN-SIRQIEVGAFNGLASLNTL 128 (452)
T ss_dssp SCEEECCS-SCCSSCCSCCC--TTCSEEECCSS-CCCEECTTTTTT--CTTCCEEECCSS-CCCEECTTTTTTCTTCCEE
T ss_pred CcEEEECC-CCcCccCCCCC--CCccEEECcCC-cCceECHHHcCC--CCCCCEEECCCC-ccCCcChhhccCcccCCEE
Confidence 45677665 46677776443 79999999984 55544 788 999999999986 6666653 3447999999
Q ss_pred EEeCCCChHHHHHHhhhh-cc--cccceEeecCCCCccccCCC--CCccccceEEeeccCCccccCcceeeeCCCCCCcC
Q 019416 116 KICDCTNAELILKVLMDQ-KG--LALESLEVDGCSSLFSLPIN--QLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVGP 190 (341)
Q Consensus 116 ~l~~~~~~~~~~~~~~~~-~~--~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~~ 190 (341)
++++|. +.. ++.. +. ++|++|++++ +.++.++.. ..+++|+.|+++++..+..++..
T Consensus 129 ~L~~n~-l~~----~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~------------ 190 (452)
T 3zyi_A 129 ELFDNW-LTV----IPSGAFEYLSKLRELWLRN-NPIESIPSYAFNRVPSLMRLDLGELKKLEYISEG------------ 190 (452)
T ss_dssp ECCSSC-CSB----CCTTTSSSCTTCCEEECCS-CCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT------------
T ss_pred ECCCCc-CCc----cChhhhcccCCCCEEECCC-CCcceeCHhHHhcCCcccEEeCCCCCCccccChh------------
Confidence 999986 444 5443 33 8999999988 467777654 45688999999887777655431
Q ss_pred CCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecC-CCCCCCCcceEecccCcccccc
Q 019416 191 EGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPE-GGLPNTSLTSLLISECENLMSL 269 (341)
Q Consensus 191 ~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~l~~~~~l~~l 269 (341)
. + ..+++|+.|+++++ .+..+| .+..+++|+.|+++++. +..++. ....+++|++|+++++ .++.+
T Consensus 191 ----~---~--~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~ 257 (452)
T 3zyi_A 191 ----A---F--EGLFNLKYLNLGMC-NIKDMP-NLTPLVGLEELEMSGNH-FPEIRPGSFHGLSSLKKLWVMNS-QVSLI 257 (452)
T ss_dssp ----T---T--TTCTTCCEEECTTS-CCSSCC-CCTTCTTCCEEECTTSC-CSEECGGGGTTCTTCCEEECTTS-CCCEE
T ss_pred ----h---c--cCCCCCCEEECCCC-cccccc-cccccccccEEECcCCc-CcccCcccccCccCCCEEEeCCC-cCceE
Confidence 0 1 13446899999886 455564 46778899999998864 444433 3333568999999886 46655
Q ss_pred -hhhhccCCCcCeEeecCCCCCccCCCCCC--CCCccEEEeecCC
Q 019416 270 -PHQIHKATSLQDLSVSGCPSLMSFPHGGL--PPNLISLGIIDCE 311 (341)
Q Consensus 270 -~~~l~~l~~L~~L~l~~c~~l~~~~~~~~--~~~L~~L~l~~c~ 311 (341)
+..+..+++|+.|+++++ .+..++...+ .++|+.|++.+++
T Consensus 258 ~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 258 ERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 456788899999999875 6777776533 5789999988764
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.65 E-value=1.8e-15 Score=137.68 Aligned_cols=240 Identities=17% Similarity=0.172 Sum_probs=158.9
Q ss_pred CCCcCeEEcCCCCCCccccc-cccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccC--CCCCCC
Q 019416 39 GETLESLEIDNLSSLASFLR-SELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQ--DYFPTT 111 (341)
Q Consensus 39 ~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~ 111 (341)
.++|++|+++++ .++.++. .+..+++|++|+++++ .+..+ +.. +++|++|++++| .+..++. ...+++
T Consensus 51 ~~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~--l~~L~~L~Ls~n-~l~~~~~~~~~~l~~ 125 (353)
T 2z80_A 51 TEAVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSS--LGSLEHLDLSYN-YLSNLSSSWFKPLSS 125 (353)
T ss_dssp CTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTT--CTTCCEEECCSS-CCSSCCHHHHTTCTT
T ss_pred cccCcEEECCCC-cCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCC--CCCCCEEECCCC-cCCcCCHhHhCCCcc
Confidence 357888888875 4555554 5777888888888874 45444 667 888888888875 5555554 345788
Q ss_pred ccEEEEeCCCChHHHHHHhhh--hcc--cccceEeecCCCCccccCCC--CCccccceEEeeccCCcccc-CcceeeeCC
Q 019416 112 LKRLKICDCTNAELILKVLMD--QKG--LALESLEVDGCSSLFSLPIN--QLPATLRHLRIVNCMNLKSL-GESSKIRNC 184 (341)
Q Consensus 112 L~~L~l~~~~~~~~~~~~~~~--~~~--~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~l~~~-~~~l~l~~~ 184 (341)
|++|++++|. +.. +|. .+. ++|++|++++++.++.++.. ..+++|+.|+++++. +..+ +..
T Consensus 126 L~~L~L~~n~-l~~----l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~------ 193 (353)
T 2z80_A 126 LTFLNLLGNP-YKT----LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD-LQSYEPKS------ 193 (353)
T ss_dssp CSEEECTTCC-CSS----SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTTT------
T ss_pred CCEEECCCCC-Ccc----cCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC-cCccCHHH------
Confidence 8888888875 334 554 222 88888888876666666543 456788888887753 2222 110
Q ss_pred CCCCcCCCcccccccccccccccceEeeccCcCCCcccccC-CCCCCcCeEEeecCCCCceecCCCC----CCCCcceEe
Q 019416 185 DSVVGPEGESSLENMTSSHTLELRELEIWDCLELEFLPEDM-HNFTDLNLLSISNCPSLESFPEGGL----PNTSLTSLL 259 (341)
Q Consensus 185 ~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~~~~~~~----~~~~L~~L~ 259 (341)
+. .+++|+.|+++++. +..+|..+ ..+++|+.|+++++. +..++...+ ..+.++.++
T Consensus 194 --------------l~--~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~~~~~~l~~l~ 255 (353)
T 2z80_A 194 --------------LK--SIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDTD-LDTFHFSELSTGETNSLIKKFT 255 (353)
T ss_dssp --------------TT--TCSEEEEEEEECSC-STTHHHHHHHHTTTEEEEEEESCB-CTTCCCC------CCCCCCEEE
T ss_pred --------------Hh--ccccCCeecCCCCc-cccchhhhhhhcccccEEECCCCc-cccccccccccccccchhhccc
Confidence 11 33468888998864 45555433 347889999998864 333322111 124666777
Q ss_pred cccCc----ccccchhhhccCCCcCeEeecCCCCCccCCCCC--CCCCccEEEeecCCCCC
Q 019416 260 ISECE----NLMSLPHQIHKATSLQDLSVSGCPSLMSFPHGG--LPPNLISLGIIDCENLI 314 (341)
Q Consensus 260 l~~~~----~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~~--~~~~L~~L~l~~c~~~~ 314 (341)
+.++. .+..+|..+..+++|+.|+++++ .++.++... ..++|++|++.+++...
T Consensus 256 L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 256 FRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp EESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 76642 12346778889999999999885 677888753 36899999999886443
No 55
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.65 E-value=1.9e-16 Score=141.85 Aligned_cols=238 Identities=14% Similarity=0.065 Sum_probs=171.1
Q ss_pred CCccEEeccCCCCchh---h---hcccCCCCcceEeeec-CCCCccccC-CCCCCCccEEEEeCCCChHHHHHHhhhhcc
Q 019416 64 TTVKQLKINKCPDLEV---L---LHRMAYTSLEYLEFSS-CLFFSNSKQ-DYFPTTLKRLKICDCTNAELILKVLMDQKG 135 (341)
Q Consensus 64 ~~L~~L~l~~~~~l~~---~---~~~~~l~~L~~L~l~~-~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 135 (341)
.++++|+++++ .+.. + +.. +++|++|++++ +.....+|. ...+++|++|++++|..... +|..+.
T Consensus 50 ~~l~~L~L~~~-~l~~~~~~~~~l~~--l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~~~ 122 (313)
T 1ogq_A 50 YRVNNLDLSGL-NLPKPYPIPSSLAN--LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA----IPDFLS 122 (313)
T ss_dssp CCEEEEEEECC-CCSSCEECCGGGGG--CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE----CCGGGG
T ss_pred ceEEEEECCCC-CccCCcccChhHhC--CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc----CCHHHh
Confidence 68999999995 4543 3 888 99999999995 433335553 45589999999999875545 676666
Q ss_pred --cccceEeecCCCCcc-ccCCC-CCccccceEEeeccCCccccCcceeeeCCCCCCcCCCccccccccccccc-ccceE
Q 019416 136 --LALESLEVDGCSSLF-SLPIN-QLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVGPEGESSLENMTSSHTL-ELREL 210 (341)
Q Consensus 136 --~~L~~L~l~~~~~l~-~l~~~-~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~~~~~~~~~~l~~~~~~-~L~~L 210 (341)
++|++|+++++ .++ .+|.. ..+++|++|+++++.--..+|..+ . .++ +|+.|
T Consensus 123 ~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l-----------------~-----~l~~~L~~L 179 (313)
T 1ogq_A 123 QIKTLVTLDFSYN-ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY-----------------G-----SFSKLFTSM 179 (313)
T ss_dssp GCTTCCEEECCSS-EEESCCCGGGGGCTTCCEEECCSSCCEEECCGGG-----------------G-----CCCTTCCEE
T ss_pred CCCCCCEEeCCCC-ccCCcCChHHhcCCCCCeEECcCCcccCcCCHHH-----------------h-----hhhhcCcEE
Confidence 99999999985 554 45443 567899999998864222333211 1 222 59999
Q ss_pred eeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccchhhhccCCCcCeEeecCCCCC
Q 019416 211 EIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQIHKATSLQDLSVSGCPSL 290 (341)
Q Consensus 211 ~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l 290 (341)
+++++.....+|..+..++ |+.|+++++.-....+.....+++|++|+++++ .++..+..+..+++|++|+++++ .+
T Consensus 180 ~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~l~~L~~L~Ls~N-~l 256 (313)
T 1ogq_A 180 TISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN-SLAFDLGKVGLSKNLNGLDLRNN-RI 256 (313)
T ss_dssp ECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSS-EECCBGGGCCCCTTCCEEECCSS-CC
T ss_pred ECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCC-ceeeecCcccccCCCCEEECcCC-cc
Confidence 9999765557788888876 999999986422233333334579999999996 46655556888999999999986 45
Q ss_pred c-cCCCC-CCCCCccEEEeecCCCCCccccccccCCCceeEEEEeCCCC
Q 019416 291 M-SFPHG-GLPPNLISLGIIDCENLIPLSQWELHKLKHLNKYTILGGLP 337 (341)
Q Consensus 291 ~-~~~~~-~~~~~L~~L~l~~c~~~~~~~~~~i~~~~~L~~l~l~~~C~ 337 (341)
. .++.. ...++|++|+++++......+.. .++++|+.+++.+ ++
T Consensus 257 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~--~~l~~L~~l~l~~-N~ 302 (313)
T 1ogq_A 257 YGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG--GNLQRFDVSAYAN-NK 302 (313)
T ss_dssp EECCCGGGGGCTTCCEEECCSSEEEEECCCS--TTGGGSCGGGTCS-SS
T ss_pred cCcCChHHhcCcCCCEEECcCCcccccCCCC--ccccccChHHhcC-CC
Confidence 4 55543 34689999999998554455554 7788999998888 54
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.64 E-value=4.6e-15 Score=132.23 Aligned_cols=105 Identities=27% Similarity=0.303 Sum_probs=71.7
Q ss_pred cccceEeeccCcCCC-cccccCCCCCCcCeEEeecCCCCceecC-CCCCCCCcceEecccCcccccchh-hhccCCCcCe
Q 019416 205 LELRELEIWDCLELE-FLPEDMHNFTDLNLLSISNCPSLESFPE-GGLPNTSLTSLLISECENLMSLPH-QIHKATSLQD 281 (341)
Q Consensus 205 ~~L~~L~l~~~~~l~-~l~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~ 281 (341)
++|+.|+++++.... .+|..+..+++|+.|++++|. +..++. ....+++|++|+++++ .++.++. .+..+++|+.
T Consensus 150 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~ 227 (306)
T 2z66_A 150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQV 227 (306)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTS-CCSBCCSGGGTTCTTCCE
T ss_pred cCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC-cCCcCHHHhcCCCCCCEEECCCC-ccCccChhhccCcccCCE
Confidence 358888888764333 357778888888888888864 555533 3334568888888885 4666654 5778888999
Q ss_pred EeecCCCCCccCCCC---CCCCCccEEEeecCCC
Q 019416 282 LSVSGCPSLMSFPHG---GLPPNLISLGIIDCEN 312 (341)
Q Consensus 282 L~l~~c~~l~~~~~~---~~~~~L~~L~l~~c~~ 312 (341)
|+++++ .+...... ..+++|++|++++++.
T Consensus 228 L~L~~N-~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 228 LDYSLN-HIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp EECTTS-CCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred eECCCC-CCcccCHHHHHhhhccCCEEEccCCCe
Confidence 999885 45444332 2346899999988653
No 57
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.63 E-value=1e-15 Score=145.37 Aligned_cols=232 Identities=11% Similarity=0.088 Sum_probs=133.4
Q ss_pred CCCCcCeEEcCCCCCCccc-cccccCCCCccEEeccCCCCchhh--hcccCCCCcceEeeecCCCCccccCCCCCCCccE
Q 019416 38 TGETLESLEIDNLSSLASF-LRSELAATTVKQLKINKCPDLEVL--LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLKR 114 (341)
Q Consensus 38 ~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~ 114 (341)
.+++|++|++++|. ++.+ |..+..+++|++|++++| .+... +.. +++|++|++++| .+..++. .++|++
T Consensus 32 ~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~l~~--l~~L~~L~Ls~N-~l~~l~~---~~~L~~ 103 (487)
T 3oja_A 32 SAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSN-VLYETLDLES--LSTLRTLDLNNN-YVQELLV---GPSIET 103 (487)
T ss_dssp TGGGCCEEECCSSC-CCCCCGGGGTTCTTCCEEECTTS-CCEEEEECTT--CTTCCEEECCSS-EEEEEEE---CTTCCE
T ss_pred cCCCccEEEeeCCc-CCCCCHHHHhCCCCCCEEEeeCC-CCCCCccccc--CCCCCEEEecCC-cCCCCCC---CCCcCE
Confidence 45578888888753 4444 445667777888887774 34333 666 777777777764 4444432 256666
Q ss_pred EEEeCCCChHHHHHHhhhhcccccceEeecCCCCccccCCCCCccccceEEeeccCCccccCcceeeeCCCCCCcCCCcc
Q 019416 115 LKICDCTNAELILKVLMDQKGLALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVGPEGES 194 (341)
Q Consensus 115 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~~~~~~ 194 (341)
|++++|.. +.++.. .+++|+.|+++++. +..++. .
T Consensus 104 L~L~~N~l---------------------------~~~~~~-~l~~L~~L~L~~N~-l~~~~~----------------~ 138 (487)
T 3oja_A 104 LHAANNNI---------------------------SRVSCS-RGQGKKNIYLANNK-ITMLRD----------------L 138 (487)
T ss_dssp EECCSSCC---------------------------CCEEEC-CCSSCEEEECCSSC-CCSGGG----------------B
T ss_pred EECcCCcC---------------------------CCCCcc-ccCCCCEEECCCCC-CCCCCc----------------h
Confidence 66666542 222111 12345555554432 211110 0
Q ss_pred cccccccccccccceEeeccCcCCCcccccCC-CCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccchhhh
Q 019416 195 SLENMTSSHTLELRELEIWDCLELEFLPEDMH-NFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQI 273 (341)
Q Consensus 195 ~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~-~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l 273 (341)
. + ..+++|+.|+++++......|..+. .+++|+.|++++|. +..++... .+++|++|+++++ .++.+|..+
T Consensus 139 ~---~--~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~~~-~l~~L~~L~Ls~N-~l~~~~~~~ 210 (487)
T 3oja_A 139 D---E--GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQV-VFAKLKTLDLSSN-KLAFMGPEF 210 (487)
T ss_dssp C---G--GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECCC-CCTTCCEEECCSS-CCCEECGGG
T ss_pred h---h--cCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-cccccccc-cCCCCCEEECCCC-CCCCCCHhH
Confidence 0 0 1233577777776543333455554 56778888887754 44444432 2468888888875 477777677
Q ss_pred ccCCCcCeEeecCCCCCccCCCC-CCCCCccEEEeecCCCCC-ccccccccCCCceeEEEE
Q 019416 274 HKATSLQDLSVSGCPSLMSFPHG-GLPPNLISLGIIDCENLI-PLSQWELHKLKHLNKYTI 332 (341)
Q Consensus 274 ~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~c~~~~-~~~~~~i~~~~~L~~l~l 332 (341)
..+++|+.|+++++ .+..+|.. ..+++|+.|++.+++... ..+.| +..++.|+.+.+
T Consensus 211 ~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~-~~~l~~L~~l~~ 269 (487)
T 3oja_A 211 QSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAK 269 (487)
T ss_dssp GGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCBCHHHHHHH-HTTCHHHHHHHH
T ss_pred cCCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCCCcCcchHHH-HHhCCCCcEEec
Confidence 77788888888774 56666654 445778888887775542 33333 455555555544
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.62 E-value=1.7e-15 Score=135.95 Aligned_cols=236 Identities=10% Similarity=0.108 Sum_probs=138.5
Q ss_pred CCCCCcCeEEcCCCCCCccc-cccccCCCCccEEeccCCCCchhh--hcccCCCCcceEeeecCCCCccccCCCCCCCcc
Q 019416 37 RTGETLESLEIDNLSSLASF-LRSELAATTVKQLKINKCPDLEVL--LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLK 113 (341)
Q Consensus 37 ~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~ 113 (341)
..+++|++|++++| .++.+ +..+..+++|++|++++| .+... +.. +++|++|++++| .+..++. .++|+
T Consensus 31 ~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~--l~~L~~L~Ls~n-~l~~l~~---~~~L~ 102 (317)
T 3o53_A 31 QSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSN-VLYETLDLES--LSTLRTLDLNNN-YVQELLV---GPSIE 102 (317)
T ss_dssp TTGGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTS-CCEEEEEETT--CTTCCEEECCSS-EEEEEEE---CTTCC
T ss_pred ccCCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCC-cCCcchhhhh--cCCCCEEECcCC-ccccccC---CCCcC
Confidence 35678888888876 44444 345777888888888874 44444 777 888888888875 4554442 37788
Q ss_pred EEEEeCCCChHHHHHHhhhhcccccceEeecCCCCccccCCC--CCccccceEEeeccCCccccCcceeeeCCCCCCcCC
Q 019416 114 RLKICDCTNAELILKVLMDQKGLALESLEVDGCSSLFSLPIN--QLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVGPE 191 (341)
Q Consensus 114 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~~~ 191 (341)
+|++++|.... ++....++|++|+++++ .++.++.. ..+++|+.|+++++. +..++...
T Consensus 103 ~L~l~~n~l~~-----~~~~~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~------------ 163 (317)
T 3o53_A 103 TLHAANNNISR-----VSCSRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAE------------ 163 (317)
T ss_dssp EEECCSSCCSE-----EEECCCSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSC-CCEEEGGG------------
T ss_pred EEECCCCccCC-----cCccccCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCCC-CCcccHHH------------
Confidence 88888876322 22222277888888773 55555432 345678888887653 33221100
Q ss_pred CcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccchh
Q 019416 192 GESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPH 271 (341)
Q Consensus 192 ~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~ 271 (341)
+. ..+++|+.|+++++. +..++.. ..+++|++|++++| .+..++.....+++|++|+++++ .++.+|.
T Consensus 164 -------~~-~~l~~L~~L~L~~N~-l~~~~~~-~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~ 231 (317)
T 3o53_A 164 -------LA-ASSDTLEHLNLQYNF-IYDVKGQ-VVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-KLVLIEK 231 (317)
T ss_dssp -------GG-GGTTTCCEEECTTSC-CCEEECC-CCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS-CCCEECT
T ss_pred -------Hh-hccCcCCEEECCCCc-Ccccccc-cccccCCEEECCCC-cCCcchhhhcccCcccEEECcCC-cccchhh
Confidence 10 023357777777653 4444322 23667777777775 35555544334467777777775 4667776
Q ss_pred hhccCCCcCeEeecCCCCC-ccCCCC-CCCCCccEEEeecCC
Q 019416 272 QIHKATSLQDLSVSGCPSL-MSFPHG-GLPPNLISLGIIDCE 311 (341)
Q Consensus 272 ~l~~l~~L~~L~l~~c~~l-~~~~~~-~~~~~L~~L~l~~c~ 311 (341)
.+..+++|+.|++++++-. ..++.. ...+.|+.+++.++.
T Consensus 232 ~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~ 273 (317)
T 3o53_A 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273 (317)
T ss_dssp TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCch
Confidence 6677777777777764322 122111 223455555555443
No 59
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.60 E-value=1e-14 Score=132.75 Aligned_cols=240 Identities=18% Similarity=0.137 Sum_probs=161.0
Q ss_pred CCchhhhhhcccCCC--ccc-cCCCCCCCcCeEEcCCCCCCccc-cccccCCCCccEEeccCCCCchhh----hcccCCC
Q 019416 16 PVPKNFLALALFPDE--DKI-LGIRTGETLESLEIDNLSSLASF-LRSELAATTVKQLKINKCPDLEVL----LHRMAYT 87 (341)
Q Consensus 16 ~~~~~~~~l~~~~~~--~~~-~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~ 87 (341)
.+++.+..|.+..+. ... ..+..+++|++|++++| .++.+ +..+..+++|++|++++| .+..+ ++. ++
T Consensus 49 ~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~--l~ 124 (353)
T 2z80_A 49 GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKP--LS 124 (353)
T ss_dssp TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHTT--CT
T ss_pred cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhCC--Cc
Confidence 344566666665442 222 25788999999999987 55555 456888999999999994 55554 788 99
Q ss_pred CcceEeeecCCCCccccC---CCCCCCccEEEEeCCCChHHHHHHhh-hhcc--cccceEeecCCCCcccc-CCC-CCcc
Q 019416 88 SLEYLEFSSCLFFSNSKQ---DYFPTTLKRLKICDCTNAELILKVLM-DQKG--LALESLEVDGCSSLFSL-PIN-QLPA 159 (341)
Q Consensus 88 ~L~~L~l~~~~~l~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~--~~L~~L~l~~~~~l~~l-~~~-~~~~ 159 (341)
+|++|+++++ .+..++. ...+++|++|++++|..+.. ++ ..+. ++|++|+++++ .++.. +.. ..++
T Consensus 125 ~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~ 198 (353)
T 2z80_A 125 SLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTK----IQRKDFAGLTFLEELEIDAS-DLQSYEPKSLKSIQ 198 (353)
T ss_dssp TCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCE----ECTTTTTTCCEEEEEEEEET-TCCEECTTTTTTCS
T ss_pred cCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccc----cCHHHccCCCCCCEEECCCC-CcCccCHHHHhccc
Confidence 9999999986 6667765 34589999999999864554 43 3333 89999999985 45554 332 5568
Q ss_pred ccceEEeeccCCccccCcceeeeCCCCCCcCCCcccccccccccccccceEeeccCcCCCcccccC---CCCCCcCeEEe
Q 019416 160 TLRHLRIVNCMNLKSLGESSKIRNCDSVVGPEGESSLENMTSSHTLELRELEIWDCLELEFLPEDM---HNFTDLNLLSI 236 (341)
Q Consensus 160 ~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~---~~l~~L~~L~l 236 (341)
+|+.|+++++. +..++... + ..+++|+.|+++++.-....+..+ ...+.++.+++
T Consensus 199 ~L~~L~l~~n~-l~~~~~~~-------------------~--~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L 256 (353)
T 2z80_A 199 NVSHLILHMKQ-HILLLEIF-------------------V--DVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTF 256 (353)
T ss_dssp EEEEEEEECSC-STTHHHHH-------------------H--HHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEE
T ss_pred cCCeecCCCCc-cccchhhh-------------------h--hhcccccEEECCCCccccccccccccccccchhhcccc
Confidence 89999998864 33333200 0 123468999998864322212221 23456788888
Q ss_pred ecCCCC----ceecCCCCCCCCcceEecccCcccccchhh-hccCCCcCeEeecCCC
Q 019416 237 SNCPSL----ESFPEGGLPNTSLTSLLISECENLMSLPHQ-IHKATSLQDLSVSGCP 288 (341)
Q Consensus 237 ~~c~~l----~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-l~~l~~L~~L~l~~c~ 288 (341)
.++.-- ..++.....+++|++|+++++ .++.+|.. +..+++|++|++++++
T Consensus 257 ~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 257 RNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp ESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence 775321 112222223468999999986 58888876 4888999999998864
No 60
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.59 E-value=2.2e-14 Score=127.85 Aligned_cols=235 Identities=21% Similarity=0.188 Sum_probs=148.1
Q ss_pred CeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCcccc----CCCCCCCccE
Q 019416 43 ESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSK----QDYFPTTLKR 114 (341)
Q Consensus 43 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~----~~~~~~~L~~ 114 (341)
+.++.++ ..++.+|..+. ++|++|+++++ .+..+ +.. +++|++|+++++ .+..+. ....+++|++
T Consensus 10 ~~l~c~~-~~l~~ip~~~~--~~l~~L~L~~n-~l~~i~~~~~~~--l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~ 82 (306)
T 2z66_A 10 TEIRCNS-KGLTSVPTGIP--SSATRLELESN-KLQSLPHGVFDK--LTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKY 82 (306)
T ss_dssp TEEECCS-SCCSSCCSCCC--TTCCEEECCSS-CCCCCCTTTTTT--CTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCE
T ss_pred CEEEcCC-CCcccCCCCCC--CCCCEEECCCC-ccCccCHhHhhc--cccCCEEECCCC-ccCcccCcccccccccccCE
Confidence 4566665 35666665332 67888888874 44443 566 777777777765 333221 1122456666
Q ss_pred EEEeCCCChHHHHHHhhhhcccccceEeecCCCCccccCCCCCccccceEEeeccCCccccCcceeeeCCCCCCcCCCcc
Q 019416 115 LKICDCTNAELILKVLMDQKGLALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVGPEGES 194 (341)
Q Consensus 115 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~~~~~~ 194 (341)
|++++|. +.. +|..+ ..+++|++|+++++. +..++.. .
T Consensus 83 L~Ls~n~-i~~----l~~~~---------------------~~l~~L~~L~l~~n~-l~~~~~~---------------~ 120 (306)
T 2z66_A 83 LDLSFNG-VIT----MSSNF---------------------LGLEQLEHLDFQHSN-LKQMSEF---------------S 120 (306)
T ss_dssp EECCSCS-EEE----EEEEE---------------------ETCTTCCEEECTTSE-EESSTTT---------------T
T ss_pred EECCCCc-ccc----Chhhc---------------------CCCCCCCEEECCCCc-ccccccc---------------h
Confidence 6666654 222 22222 223455555555431 2211110 0
Q ss_pred cccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCc-eecCCCCCCCCcceEecccCcccccc-hhh
Q 019416 195 SLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLE-SFPEGGLPNTSLTSLLISECENLMSL-PHQ 272 (341)
Q Consensus 195 ~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~-~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~ 272 (341)
. + ..+++|+.|+++++......+..+..+++|++|+++++.-.. ..+.....+++|++|+++++ .++.+ |..
T Consensus 121 ~---~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~ 194 (306)
T 2z66_A 121 V---F--LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTA 194 (306)
T ss_dssp T---T--TTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTT
T ss_pred h---h--hhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC-CcCCcCHHH
Confidence 0 1 133368888888875444556778889999999999975323 35555555679999999996 57766 567
Q ss_pred hccCCCcCeEeecCCCCCccCCCC--CCCCCccEEEeecCCCCCccccccccCC-CceeEEEEeC
Q 019416 273 IHKATSLQDLSVSGCPSLMSFPHG--GLPPNLISLGIIDCENLIPLSQWELHKL-KHLNKYTILG 334 (341)
Q Consensus 273 l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~c~~~~~~~~~~i~~~-~~L~~l~l~~ 334 (341)
+..+++|+.|+++++ .+..++.. ...++|++|+++++......+. .+..+ ++|++|++++
T Consensus 195 ~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~~~~~L~~L~L~~ 257 (306)
T 2z66_A 195 FNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ-ELQHFPSSLAFLNLTQ 257 (306)
T ss_dssp TTTCTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTTSCCCBCSSS-SCCCCCTTCCEEECTT
T ss_pred hcCCCCCCEEECCCC-ccCccChhhccCcccCCEeECCCCCCcccCHH-HHHhhhccCCEEEccC
Confidence 889999999999985 56666653 3468999999999865543333 35677 5999999998
No 61
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.58 E-value=5.4e-14 Score=127.86 Aligned_cols=213 Identities=20% Similarity=0.227 Sum_probs=153.3
Q ss_pred CCCcCeEEcCCCCCCccccc-cccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccCC--CCCCC
Q 019416 39 GETLESLEIDNLSSLASFLR-SELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQD--YFPTT 111 (341)
Q Consensus 39 ~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~ 111 (341)
.+++++|+++++ .++.+|. .+.++++|++|++++|...+.+ +.. +++|+++.+.+++.+..++.. ..+++
T Consensus 29 ~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~--L~~l~~~l~~~~N~l~~l~~~~f~~l~~ 105 (350)
T 4ay9_X 29 PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSN--LPKLHEIRIEKANNLLYINPEAFQNLPN 105 (350)
T ss_dssp CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCS--CTTCCEEEEEEETTCCEECTTSBCCCTT
T ss_pred CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhc--chhhhhhhcccCCcccccCchhhhhccc
Confidence 367999999985 6777775 4778999999999986433333 667 888887666555677777543 44789
Q ss_pred ccEEEEeCCCChHHHHHHhhhhcc---cccceEeecCCCCccccCCCC---CccccceEEeeccCCccccCcceeeeCCC
Q 019416 112 LKRLKICDCTNAELILKVLMDQKG---LALESLEVDGCSSLFSLPINQ---LPATLRHLRIVNCMNLKSLGESSKIRNCD 185 (341)
Q Consensus 112 L~~L~l~~~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~l~~l~~~~---~~~~L~~L~l~~~~~l~~~~~~l~l~~~~ 185 (341)
|++|++++|. +.. ++.... .++..+++.++..+..++... ....++.|+++++ .++.++...
T Consensus 106 L~~L~l~~n~-l~~----~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~~~~------ 173 (350)
T 4ay9_X 106 LQYLLISNTG-IKH----LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNSA------ 173 (350)
T ss_dssp CCEEEEEEEC-CSS----CCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEECTTS------
T ss_pred cccccccccc-ccc----CCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc-cccCCChhh------
Confidence 9999999886 333 443322 566778887777888777652 2345777888764 455444311
Q ss_pred CCCcCCCcccccccccccccccceEeeccCcCCCcccc-cCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCc
Q 019416 186 SVVGPEGESSLENMTSSHTLELRELEIWDCLELEFLPE-DMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECE 264 (341)
Q Consensus 186 ~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~ 264 (341)
+ ..++|+++.+.+++.++.+|. .|..+++|+.|+++++ .++.+|...+. +|++|.+.++.
T Consensus 174 -------------f---~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~--~L~~L~~l~~~ 234 (350)
T 4ay9_X 174 -------------F---NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLE--NLKKLRARSTY 234 (350)
T ss_dssp -------------S---TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSSCT--TCCEEECTTCT
T ss_pred -------------c---cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChhhhc--cchHhhhccCC
Confidence 1 123588899988888888874 5688899999999986 57888776654 89999888888
Q ss_pred ccccchhhhccCCCcCeEeecC
Q 019416 265 NLMSLPHQIHKATSLQDLSVSG 286 (341)
Q Consensus 265 ~l~~l~~~l~~l~~L~~L~l~~ 286 (341)
.++.+| .+..+++|+.+++.+
T Consensus 235 ~l~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 235 NLKKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp TCCCCC-CTTTCCSCCEEECSC
T ss_pred CcCcCC-CchhCcChhhCcCCC
Confidence 888888 578888999988864
No 62
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.58 E-value=2.7e-14 Score=122.68 Aligned_cols=100 Identities=18% Similarity=0.158 Sum_probs=64.5
Q ss_pred eEeeccCcCCCcccc-cCCCCCCcC-eEEeecCCCCceecCCCCCCCCcceEecccCcccccchh-hhccC-CCcCeEee
Q 019416 209 ELEIWDCLELEFLPE-DMHNFTDLN-LLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPH-QIHKA-TSLQDLSV 284 (341)
Q Consensus 209 ~L~l~~~~~l~~l~~-~~~~l~~L~-~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~l~~l-~~L~~L~l 284 (341)
.|+++++..+..++. .+..+++|+ .|+++++ .++.++...+..++|++|+++++..++.++. .+..+ ++|+.|++
T Consensus 134 ~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l 212 (239)
T 2xwt_C 134 ILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDV 212 (239)
T ss_dssp EEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEEC
T ss_pred EEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEEC
Confidence 666666544555543 466677777 7777764 3556666544445778888877544666653 46667 78888888
Q ss_pred cCCCCCccCCCCCCCCCccEEEeecCC
Q 019416 285 SGCPSLMSFPHGGLPPNLISLGIIDCE 311 (341)
Q Consensus 285 ~~c~~l~~~~~~~~~~~L~~L~l~~c~ 311 (341)
++ +.++.++.. .+++|+.|++.++.
T Consensus 213 ~~-N~l~~l~~~-~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 213 SQ-TSVTALPSK-GLEHLKELIARNTW 237 (239)
T ss_dssp TT-CCCCCCCCT-TCTTCSEEECTTC-
T ss_pred CC-CccccCChh-HhccCceeeccCcc
Confidence 76 456666654 45677888777654
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.58 E-value=1.3e-13 Score=121.59 Aligned_cols=213 Identities=19% Similarity=0.177 Sum_probs=127.6
Q ss_pred cEEeccCCCCchhh-hcccCCCCcceEeeecCCCCccccC--CCCCCCccEEEEeCCCChHHHHHHhhhhcc--cccceE
Q 019416 67 KQLKINKCPDLEVL-LHRMAYTSLEYLEFSSCLFFSNSKQ--DYFPTTLKRLKICDCTNAELILKVLMDQKG--LALESL 141 (341)
Q Consensus 67 ~~L~l~~~~~l~~~-~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L 141 (341)
+.++.++ ..+..+ .+. .++|++|+++++ .+..++. ...+++|++|+++++..... .+..+. ++|++|
T Consensus 14 ~~~~c~~-~~l~~ip~~~--~~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L 85 (285)
T 1ozn_A 14 VTTSCPQ-QGLQAVPVGI--PAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARI----DAAAFTGLALLEQL 85 (285)
T ss_dssp CEEECCS-SCCSSCCTTC--CTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEE----CTTTTTTCTTCCEE
T ss_pred eEEEcCc-CCcccCCcCC--CCCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCCcccee----CHhhcCCccCCCEE
Confidence 4555554 345444 445 678888888875 5555553 34477888888888753222 233343 778888
Q ss_pred eecCCCCccccCCC--CCccccceEEeeccCCccccCcceeeeCCCCCCcCCCcccccccccccccccceEeeccCcCCC
Q 019416 142 EVDGCSSLFSLPIN--QLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVGPEGESSLENMTSSHTLELRELEIWDCLELE 219 (341)
Q Consensus 142 ~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~ 219 (341)
+++++..++.++.. ..+++|++|+++++. +..++. . . + ..+++|+.|+++++. +.
T Consensus 86 ~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~--------------~--~---~--~~l~~L~~L~l~~n~-l~ 142 (285)
T 1ozn_A 86 DLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGP--------------G--L---F--RGLAALQYLYLQDNA-LQ 142 (285)
T ss_dssp ECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCT--------------T--T---T--TTCTTCCEEECCSSC-CC
T ss_pred eCCCCCCccccCHHHhcCCcCCCEEECCCCc-CCEECH--------------h--H---h--hCCcCCCEEECCCCc-cc
Confidence 88776546666432 445677777777653 222211 0 0 1 123357777777754 33
Q ss_pred ccc-ccCCCCCCcCeEEeecCCCCceecCC-CCCCCCcceEecccCcccccc-hhhhccCCCcCeEeecCCCCCccCCCC
Q 019416 220 FLP-EDMHNFTDLNLLSISNCPSLESFPEG-GLPNTSLTSLLISECENLMSL-PHQIHKATSLQDLSVSGCPSLMSFPHG 296 (341)
Q Consensus 220 ~l~-~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~L~l~~~~~l~~l-~~~l~~l~~L~~L~l~~c~~l~~~~~~ 296 (341)
.++ ..+..+++|+.|+++++ .++.++.. ...+++|++|+++++. ++.+ |..+..+++|+.|+++++ .+..++..
T Consensus 143 ~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~ 219 (285)
T 1ozn_A 143 ALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFAN-NLSALPTE 219 (285)
T ss_dssp CCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCSCCCHH
T ss_pred ccCHhHhccCCCccEEECCCC-cccccCHHHhcCccccCEEECCCCc-ccccCHhHccCcccccEeeCCCC-cCCcCCHH
Confidence 443 44667777888888775 45555553 2234677788877753 5544 556777777788877764 45555432
Q ss_pred --CCCCCccEEEeecCCCC
Q 019416 297 --GLPPNLISLGIIDCENL 313 (341)
Q Consensus 297 --~~~~~L~~L~l~~c~~~ 313 (341)
...++|+.|++++++..
T Consensus 220 ~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 220 ALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp HHTTCTTCCEEECCSSCEE
T ss_pred HcccCcccCEEeccCCCcc
Confidence 33567777777776533
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.58 E-value=9.9e-14 Score=122.29 Aligned_cols=80 Identities=20% Similarity=0.284 Sum_probs=52.7
Q ss_pred ccceEeeccCcCCCccc-ccCCCCCCcCeEEeecCCCCcee-cCCCCCCCCcceEecccCcccccchh-hhccCCCcCeE
Q 019416 206 ELRELEIWDCLELEFLP-EDMHNFTDLNLLSISNCPSLESF-PEGGLPNTSLTSLLISECENLMSLPH-QIHKATSLQDL 282 (341)
Q Consensus 206 ~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L 282 (341)
+|+.|+++++ .++.++ ..+..+++|+.|+++++. +..+ +.....+++|++|+++++ .++.++. .+..+++|+.|
T Consensus 154 ~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L 230 (285)
T 1ozn_A 154 NLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYL 230 (285)
T ss_dssp TCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEE
T ss_pred CccEEECCCC-cccccCHHHhcCccccCEEECCCCc-ccccCHhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEE
Confidence 5777777765 344444 346677788888888764 4444 333334568888888875 4666653 47778888888
Q ss_pred eecCCC
Q 019416 283 SVSGCP 288 (341)
Q Consensus 283 ~l~~c~ 288 (341)
++++++
T Consensus 231 ~l~~N~ 236 (285)
T 1ozn_A 231 RLNDNP 236 (285)
T ss_dssp ECCSSC
T ss_pred eccCCC
Confidence 887754
No 65
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.56 E-value=6.9e-14 Score=120.07 Aligned_cols=125 Identities=17% Similarity=0.237 Sum_probs=69.9
Q ss_pred ccceEeeccCcCCCcccccCCCCCCcC---eEEeecCCCCceecCCCC-CCCCcc-eEecccCcccccchhhhccCCCcC
Q 019416 206 ELRELEIWDCLELEFLPEDMHNFTDLN---LLSISNCPSLESFPEGGL-PNTSLT-SLLISECENLMSLPHQIHKATSLQ 280 (341)
Q Consensus 206 ~L~~L~l~~~~~l~~l~~~~~~l~~L~---~L~l~~c~~l~~~~~~~~-~~~~L~-~L~l~~~~~l~~l~~~l~~l~~L~ 280 (341)
+|+.|+++++. +..+|. +..+++|+ .|++++++.++.++...+ .+++|+ +|+++++ .++.+|...-..++|+
T Consensus 106 ~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L~ 182 (239)
T 2xwt_C 106 LLKFLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGYAFNGTKLD 182 (239)
T ss_dssp TCCEEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECTTTTTTCEEE
T ss_pred CCCEEeCCCCC-Cccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCHhhcCCCCCC
Confidence 46666666542 344544 55555665 777777645666655322 245677 7777764 4666665332336677
Q ss_pred eEeecCCCCCccCCCCCC--C-CCccEEEeecCCCCCccccccccCCCceeEEEEeCCCCC
Q 019416 281 DLSVSGCPSLMSFPHGGL--P-PNLISLGIIDCENLIPLSQWELHKLKHLNKYTILGGLPV 338 (341)
Q Consensus 281 ~L~l~~c~~l~~~~~~~~--~-~~L~~L~l~~c~~~~~~~~~~i~~~~~L~~l~l~~~C~~ 338 (341)
.|+++++..++.++...+ . ++|++|+++++ .++..+. ..+++|+.|++.+ |..
T Consensus 183 ~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~---~~~~~L~~L~l~~-~~~ 238 (239)
T 2xwt_C 183 AVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPS---KGLEHLKELIARN-TWT 238 (239)
T ss_dssp EEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCC---TTCTTCSEEECTT-C--
T ss_pred EEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCCh---hHhccCceeeccC-ccC
Confidence 777776544666654422 3 56777777664 3333322 2456677777666 543
No 66
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.55 E-value=1.2e-13 Score=122.13 Aligned_cols=193 Identities=21% Similarity=0.216 Sum_probs=135.8
Q ss_pred CCCCCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccCCCCCC
Q 019416 35 GIRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQDYFPT 110 (341)
Q Consensus 35 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 110 (341)
.++.+++++++++++ ..++.+|..+. ++++.|+++++ .+..+ +.. +++|++|+++++ .+..++....++
T Consensus 5 ~~~~l~~l~~l~~~~-~~l~~ip~~~~--~~l~~L~L~~N-~l~~~~~~~~~~--l~~L~~L~L~~n-~l~~~~~~~~l~ 77 (290)
T 1p9a_G 5 EVSKVASHLEVNCDK-RNLTALPPDLP--KDTTILHLSEN-LLYTFSLATLMP--YTRLTQLNLDRA-ELTKLQVDGTLP 77 (290)
T ss_dssp EEECSTTCCEEECTT-SCCSSCCSCCC--TTCCEEECTTS-CCSEEEGGGGTT--CTTCCEEECTTS-CCCEEECCSCCT
T ss_pred cccccCCccEEECCC-CCCCcCCCCCC--CCCCEEEcCCC-cCCccCHHHhhc--CCCCCEEECCCC-ccCcccCCCCCC
Confidence 356789999999997 46777776543 79999999984 55544 788 999999999985 677776667789
Q ss_pred CccEEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCCC--CCccccceEEeeccCCccccCcceeeeCCCC
Q 019416 111 TLKRLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPIN--QLPATLRHLRIVNCMNLKSLGESSKIRNCDS 186 (341)
Q Consensus 111 ~L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~ 186 (341)
+|++|+++++. +.. +|..+. ++|+.|++++ +.++.++.. ..+++|+.|+++++ .++.++..
T Consensus 78 ~L~~L~Ls~N~-l~~----l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~-------- 142 (290)
T 1p9a_G 78 VLGTLDLSHNQ-LQS----LPLLGQTLPALTVLDVSF-NRLTSLPLGALRGLGELQELYLKGN-ELKTLPPG-------- 142 (290)
T ss_dssp TCCEEECCSSC-CSS----CCCCTTTCTTCCEEECCS-SCCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTT--------
T ss_pred cCCEEECCCCc-CCc----CchhhccCCCCCEEECCC-CcCcccCHHHHcCCCCCCEEECCCC-CCCccChh--------
Confidence 99999999986 445 665544 8888888887 467776643 45677888888775 34333320
Q ss_pred CCcCCCcccccccccccccccceEeeccCcCCCcccc-cCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCc
Q 019416 187 VVGPEGESSLENMTSSHTLELRELEIWDCLELEFLPE-DMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECE 264 (341)
Q Consensus 187 l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~ 264 (341)
. +. .+++|+.|+++++ .++.+|. .+..+++|+.|+++++ .+..+|...+..++|+++++.+++
T Consensus 143 ------~-----~~--~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 143 ------L-----LT--PTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp ------T-----TT--TCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSCC
T ss_pred ------h-----cc--cccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCC-cCCccChhhcccccCCeEEeCCCC
Confidence 0 11 3346888888775 4555554 4466778888888775 466677666666678888887643
No 67
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.54 E-value=2.8e-13 Score=123.08 Aligned_cols=232 Identities=18% Similarity=0.181 Sum_probs=147.7
Q ss_pred CeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccCCC--CCCCccEEE
Q 019416 43 ESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQDY--FPTTLKRLK 116 (341)
Q Consensus 43 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~~~--~~~~L~~L~ 116 (341)
++++.++ ..++.+|..+ .+++++|++++ ++++.+ |.. +++|++|++++|.....++... .+++++++.
T Consensus 12 ~~v~C~~-~~Lt~iP~~l--~~~l~~L~Ls~-N~i~~i~~~~f~~--l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l 85 (350)
T 4ay9_X 12 RVFLCQE-SKVTEIPSDL--PRNAIELRFVL-TKLRVIQKGAFSG--FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85 (350)
T ss_dssp TEEEEES-TTCCSCCTTC--CTTCSEEEEES-CCCSEECTTSSTT--CTTCCEEEEECCTTCCEECTTSBCSCTTCCEEE
T ss_pred CEEEecC-CCCCccCcCc--CCCCCEEEccC-CcCCCcCHHHHcC--CCCCCEEECcCCCCCCccChhHhhcchhhhhhh
Confidence 4556554 4677787654 36899999998 567665 778 9999999999875556666533 356666655
Q ss_pred EeCCCChHHHHHHhhhh-cc--cccceEeecCCCCccccCCCCC--ccccceEEeeccCCccccCcceeeeCCCCCCcCC
Q 019416 117 ICDCTNAELILKVLMDQ-KG--LALESLEVDGCSSLFSLPINQL--PATLRHLRIVNCMNLKSLGESSKIRNCDSVVGPE 191 (341)
Q Consensus 117 l~~~~~~~~~~~~~~~~-~~--~~L~~L~l~~~~~l~~l~~~~~--~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~~~ 191 (341)
..++..+.. ++.. +. ++|++|++++ +.++.++...+ ..++..+++.++..+..++...
T Consensus 86 ~~~~N~l~~----l~~~~f~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~------------ 148 (350)
T 4ay9_X 86 IEKANNLLY----INPEAFQNLPNLQYLLISN-TGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS------------ 148 (350)
T ss_dssp EEEETTCCE----ECTTSBCCCTTCCEEEEEE-ECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTS------------
T ss_pred cccCCcccc----cCchhhhhccccccccccc-cccccCCchhhcccchhhhhhhccccccccccccc------------
Confidence 444444554 4333 33 7888888877 45666555432 2345566666655555444310
Q ss_pred CcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCC-CCCCCcceEecccCcccccch
Q 019416 192 GESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGG-LPNTSLTSLLISECENLMSLP 270 (341)
Q Consensus 192 ~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~-~~~~~L~~L~l~~~~~l~~l~ 270 (341)
+..++ ..++.|++++ +.++.++.......+|++|++.++..++.++... ..+++|++|+++++ +++.+|
T Consensus 149 ----f~~~~----~~l~~L~L~~-N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp 218 (350)
T 4ay9_X 149 ----FVGLS----FESVILWLNK-NGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLP 218 (350)
T ss_dssp ----STTSB----SSCEEEECCS-SCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCC
T ss_pred ----hhhcc----hhhhhhcccc-ccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccC
Confidence 00011 1367777776 3556666655555677888887777777777644 23567888888875 577777
Q ss_pred hhhccCCCcCeEeecCCCCCccCCCCCCCCCccEEEeec
Q 019416 271 HQIHKATSLQDLSVSGCPSLMSFPHGGLPPNLISLGIID 309 (341)
Q Consensus 271 ~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~ 309 (341)
. ..+.+|+.|.+.++..++.+|.-...++|+.+++.+
T Consensus 219 ~--~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 219 S--YGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp S--SSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred h--hhhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 5 335667777777777777777645567777777754
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.51 E-value=7.3e-15 Score=131.46 Aligned_cols=121 Identities=12% Similarity=0.092 Sum_probs=70.6
Q ss_pred CCCCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh-----h-------cccCCCCcceEeeecCCCCccc
Q 019416 36 IRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL-----L-------HRMAYTSLEYLEFSSCLFFSNS 103 (341)
Q Consensus 36 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-----~-------~~~~l~~L~~L~l~~~~~l~~~ 103 (341)
.+..++|++|+++++.. .+|..+.. .|+.|++++ +.+... + .. +++|++|++++|.....+
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~--~L~~L~L~~-n~l~~~~~~~~~~~~~~~~~~--l~~L~~L~L~~n~l~~~~ 111 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTD--IIKSLSLKR-LTVRAARIPSRILFGALRVLG--ISGLQELTLENLEVTGTA 111 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHH--HHHHCCCCE-EEEEEEECBHHHHHHHHHHHT--TSCCCEEEEEEEBCBSCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHH--HHhhccccc-ccccCCCcCHHHHHHHHHhcC--cCCccEEEccCCcccchh
Confidence 45577788888887654 55554433 277788877 344221 2 25 888999999886433355
Q ss_pred cCC---CCCCCccEEEEeCCCChHHHHHHhhhhcc-------cccceEeecCCCCccccCCC--CCccccceEEeecc
Q 019416 104 KQD---YFPTTLKRLKICDCTNAELILKVLMDQKG-------LALESLEVDGCSSLFSLPIN--QLPATLRHLRIVNC 169 (341)
Q Consensus 104 ~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-------~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~ 169 (341)
|.. ..+++|++|++++|.. .. .|..+. ++|++|+++++ .++.++.. ..+++|+.|+++++
T Consensus 112 ~~~~~~~~l~~L~~L~Ls~N~l-~~----~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N 183 (312)
T 1wwl_A 112 PPPLLEATGPDLNILNLRNVSW-AT----RDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVRVFPALSTLDLSDN 183 (312)
T ss_dssp CCCSSSCCSCCCSEEEEESCBC-SS----SSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCCCCSSCCEEECCSC
T ss_pred HHHHHHhcCCCccEEEccCCCC-cc----hhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHhccCCCCCEEECCCC
Confidence 543 4578888888888763 22 221111 56666666653 44444422 33445555555543
No 69
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.50 E-value=6e-14 Score=136.18 Aligned_cols=281 Identities=13% Similarity=0.044 Sum_probs=141.1
Q ss_pred CCCCcCeEEcCCCCCCcc----ccccccCCCCccEEeccCCCCch-----hh---hcccCCCCcceEeeecCCCCccc--
Q 019416 38 TGETLESLEIDNLSSLAS----FLRSELAATTVKQLKINKCPDLE-----VL---LHRMAYTSLEYLEFSSCLFFSNS-- 103 (341)
Q Consensus 38 ~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~l~-----~~---~~~~~l~~L~~L~l~~~~~l~~~-- 103 (341)
.+++|++|++++|..... ++.....+++|++|+++++. +. .+ +.. +++|++|++++|. +..+
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~-~~~~~~~~l~~~~~~--~~~L~~L~L~~~~-~~~l~~ 237 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTE-FAKISPKDLETIARN--CRSLVSVKVGDFE-ILELVG 237 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCC-CSSCCHHHHHHHHHH--CTTCCEEECSSCB-GGGGHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccC-CCccCHHHHHHHHhh--CCCCcEEeccCcc-HHHHHH
Confidence 578888888887642111 11112345666666666532 21 11 445 6666666665542 1111
Q ss_pred --------------------------cCCCCCCCccEEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCC-
Q 019416 104 --------------------------KQDYFPTTLKRLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPI- 154 (341)
Q Consensus 104 --------------------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~- 154 (341)
.....+++|++|.++++. ... +|.... ++|++|++++|. ++....
T Consensus 238 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~----l~~~~~~~~~L~~L~Ls~~~-l~~~~~~ 311 (592)
T 3ogk_B 238 FFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNE----MPILFPFAAQIRKLDLLYAL-LETEDHC 311 (592)
T ss_dssp HHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTT----GGGGGGGGGGCCEEEETTCC-CCHHHHH
T ss_pred HHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhH----HHHHHhhcCCCcEEecCCCc-CCHHHHH
Confidence 112335667777776643 222 444443 788888888875 432221
Q ss_pred --CCCccccceEEeeccCCcc-------ccC--cceeeeC----------CCCCCcCCCcccccccccccccccceEeec
Q 019416 155 --NQLPATLRHLRIVNCMNLK-------SLG--ESSKIRN----------CDSVVGPEGESSLENMTSSHTLELRELEIW 213 (341)
Q Consensus 155 --~~~~~~L~~L~l~~~~~l~-------~~~--~~l~l~~----------~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~ 213 (341)
...+++|++|++.++..-. ..+ .++++++ |..++.. ++..+ ...+++|+.|.++
T Consensus 312 ~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~----~~~~l-~~~~~~L~~L~l~ 386 (592)
T 3ogk_B 312 TLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQR----GLIAL-AQGCQELEYMAVY 386 (592)
T ss_dssp HHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHH----HHHHH-HHHCTTCSEEEEE
T ss_pred HHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHH----HHHHH-HhhCccCeEEEee
Confidence 1455778888876321000 001 1455553 4444330 00001 0134567777773
Q ss_pred cCcCCCc-ccccCCC-CCCcCeEEeec---CCCCceecCC------CCCCCCcceEecccCcc-ccc-chhh-hccCCCc
Q 019416 214 DCLELEF-LPEDMHN-FTDLNLLSISN---CPSLESFPEG------GLPNTSLTSLLISECEN-LMS-LPHQ-IHKATSL 279 (341)
Q Consensus 214 ~~~~l~~-l~~~~~~-l~~L~~L~l~~---c~~l~~~~~~------~~~~~~L~~L~l~~~~~-l~~-l~~~-l~~l~~L 279 (341)
|..+.. .+..+.. +++|+.|+++. |..++..|.. ...+++|++|+++.|.+ +.. .... ...+++|
T Consensus 387 -~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L 465 (592)
T 3ogk_B 387 -VSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNV 465 (592)
T ss_dssp -ESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTC
T ss_pred -cCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccc
Confidence 333322 2223322 66777777763 3444433211 11135777887765542 221 1112 2346778
Q ss_pred CeEeecCCCCCccC--CCC-CCCCCccEEEeecCCCCC-ccccccccCCCceeEEEEeCCCC
Q 019416 280 QDLSVSGCPSLMSF--PHG-GLPPNLISLGIIDCENLI-PLSQWELHKLKHLNKYTILGGLP 337 (341)
Q Consensus 280 ~~L~l~~c~~l~~~--~~~-~~~~~L~~L~l~~c~~~~-~~~~~~i~~~~~L~~l~l~~~C~ 337 (341)
++|++++|. +... +.. ...++|++|++++|. ++ ....+.+..+++|++|++++ |+
T Consensus 466 ~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~-n~ 524 (592)
T 3ogk_B 466 RWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQG-YR 524 (592)
T ss_dssp CEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEES-CB
T ss_pred eEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcC-Cc
Confidence 888887653 4321 111 224678888888877 44 22222245677888888887 65
No 70
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.49 E-value=7.6e-15 Score=142.53 Aligned_cols=81 Identities=16% Similarity=0.150 Sum_probs=45.8
Q ss_pred CCCCcCeEEcCCCCCCcccccccc-CCCCccEEeccCCCCchh--h---hcccCCCCcceEeeecCCCCcc-----ccCC
Q 019416 38 TGETLESLEIDNLSSLASFLRSEL-AATTVKQLKINKCPDLEV--L---LHRMAYTSLEYLEFSSCLFFSN-----SKQD 106 (341)
Q Consensus 38 ~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~l~~--~---~~~~~l~~L~~L~l~~~~~l~~-----~~~~ 106 (341)
.+++|++|++++|......+..+. .+++|++|++++|..+.. + ... +++|++|++++|. +.. ++..
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~--~~~L~~L~L~~~~-i~~~~~~~l~~~ 179 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAAT--CRNLKELDLRESD-VDDVSGHWLSHF 179 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHH--CTTCCEEECTTCE-EECCCGGGGGGS
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHh--CCCCCEEeCcCCc-cCCcchHHHHHH
Confidence 467777777777642222222232 467777777777654443 2 446 7777777777653 222 1111
Q ss_pred -CCCCCccEEEEeCCC
Q 019416 107 -YFPTTLKRLKICDCT 121 (341)
Q Consensus 107 -~~~~~L~~L~l~~~~ 121 (341)
..+++|++|++++|.
T Consensus 180 ~~~~~~L~~L~l~~~~ 195 (594)
T 2p1m_B 180 PDTYTSLVSLNISCLA 195 (594)
T ss_dssp CTTCCCCCEEECTTCC
T ss_pred hhcCCcCcEEEecccC
Confidence 134566777766664
No 71
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.49 E-value=1.1e-13 Score=123.63 Aligned_cols=123 Identities=15% Similarity=0.091 Sum_probs=80.7
Q ss_pred CCCCCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh--hcccCCCCcceEeeecCCCCccccCCCCCCCc
Q 019416 35 GIRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL--LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTL 112 (341)
Q Consensus 35 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L 112 (341)
....+++|++|+++++ .++.++ .+..+++|++|++++| .+.++ +.. +++|++|++++| .+..++....+++|
T Consensus 36 ~~~~l~~L~~L~l~~~-~i~~l~-~~~~l~~L~~L~L~~n-~i~~~~~~~~--l~~L~~L~L~~n-~l~~~~~~~~l~~L 109 (308)
T 1h6u_A 36 TQADLDGITTLSAFGT-GVTTIE-GVQYLNNLIGLELKDN-QITDLAPLKN--LTKITELELSGN-PLKNVSAIAGLQSI 109 (308)
T ss_dssp CHHHHHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGGGTT--CCSCCEEECCSC-CCSCCGGGTTCTTC
T ss_pred cHHHcCCcCEEEeeCC-CccCch-hhhccCCCCEEEccCC-cCCCChhHcc--CCCCCEEEccCC-cCCCchhhcCCCCC
Confidence 3445888999999886 455555 4677889999999885 45444 777 888888888875 56666666667888
Q ss_pred cEEEEeCCCChHHHHHHhhhhcc-cccceEeecCCCCccccCCCCCccccceEEeecc
Q 019416 113 KRLKICDCTNAELILKVLMDQKG-LALESLEVDGCSSLFSLPINQLPATLRHLRIVNC 169 (341)
Q Consensus 113 ~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~ 169 (341)
++|++++|. +.. ++.... ++|++|+++++ .++.++....+++|+.|+++++
T Consensus 110 ~~L~l~~n~-l~~----~~~l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n 161 (308)
T 1h6u_A 110 KTLDLTSTQ-ITD----VTPLAGLSNLQVLYLDLN-QITNISPLAGLTNLQYLSIGNA 161 (308)
T ss_dssp CEEECTTSC-CCC----CGGGTTCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECCSS
T ss_pred CEEECCCCC-CCC----chhhcCCCCCCEEECCCC-ccCcCccccCCCCccEEEccCC
Confidence 888888875 333 333111 66777777663 4444443334455555555553
No 72
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.48 E-value=1.4e-12 Score=115.34 Aligned_cols=192 Identities=20% Similarity=0.212 Sum_probs=106.2
Q ss_pred CCCcceEeeecCCCCccccCCCCCCCccEEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCCCCCccccce
Q 019416 86 YTSLEYLEFSSCLFFSNSKQDYFPTTLKRLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPINQLPATLRH 163 (341)
Q Consensus 86 l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~~~~~~L~~ 163 (341)
+++++++++++ ..+..+|. ..+++++.|+++++..... .+..+. ++|++|++++ +.++.++....+++|+.
T Consensus 9 l~~l~~l~~~~-~~l~~ip~-~~~~~l~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~l~~L~~ 81 (290)
T 1p9a_G 9 VASHLEVNCDK-RNLTALPP-DLPKDTTILHLSENLLYTF----SLATLMPYTRLTQLNLDR-AELTKLQVDGTLPVLGT 81 (290)
T ss_dssp STTCCEEECTT-SCCSSCCS-CCCTTCCEEECTTSCCSEE----EGGGGTTCTTCCEEECTT-SCCCEEECCSCCTTCCE
T ss_pred cCCccEEECCC-CCCCcCCC-CCCCCCCEEEcCCCcCCcc----CHHHhhcCCCCCEEECCC-CccCcccCCCCCCcCCE
Confidence 45555555554 24555543 2235566666666543221 222222 6666666665 34555554455566777
Q ss_pred EEeeccCCccccCcceeeeCCCCCCcCCCcccccccccccccccceEeeccCcCCCccc-ccCCCCCCcCeEEeecCCCC
Q 019416 164 LRIVNCMNLKSLGESSKIRNCDSVVGPEGESSLENMTSSHTLELRELEIWDCLELEFLP-EDMHNFTDLNLLSISNCPSL 242 (341)
Q Consensus 164 L~l~~~~~l~~~~~~l~l~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l 242 (341)
|+++++ .+..+|.. + ..+++|+.|+++++ .++.++ ..+..+++|+.|+++++ .+
T Consensus 82 L~Ls~N-~l~~l~~~--------------------~--~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l 136 (290)
T 1p9a_G 82 LDLSHN-QLQSLPLL--------------------G--QTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGN-EL 136 (290)
T ss_dssp EECCSS-CCSSCCCC--------------------T--TTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTS-CC
T ss_pred EECCCC-cCCcCchh--------------------h--ccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCC-CC
Confidence 777664 23333320 0 12335777777764 334443 55666777777777775 34
Q ss_pred ceecCCCC-CCCCcceEecccCcccccchhh-hccCCCcCeEeecCCCCCccCCCCCC-CCCccEEEeecCC
Q 019416 243 ESFPEGGL-PNTSLTSLLISECENLMSLPHQ-IHKATSLQDLSVSGCPSLMSFPHGGL-PPNLISLGIIDCE 311 (341)
Q Consensus 243 ~~~~~~~~-~~~~L~~L~l~~~~~l~~l~~~-l~~l~~L~~L~l~~c~~l~~~~~~~~-~~~L~~L~l~~c~ 311 (341)
..++...+ .+++|++|+++++ .++.+|.. +..+++|+.|++++ +.++.++...+ ..+|+.+++.+++
T Consensus 137 ~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~-N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 137 KTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CCCCTTTTTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred CccChhhcccccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCC-CcCCccChhhcccccCCeEEeCCCC
Confidence 55554332 3457777777764 46666653 46677777777766 35666665522 4567777776543
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.48 E-value=1.8e-13 Score=129.87 Aligned_cols=212 Identities=15% Similarity=0.135 Sum_probs=156.9
Q ss_pred cCCCCCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhhhcccCCCCcceEeeecCCCCccccCCCCCCCcc
Q 019416 34 LGIRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVLLHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLK 113 (341)
Q Consensus 34 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~ 113 (341)
..+..+++|++|++++|. ++..++ +..+++|++|++++| .+.. +.. .++|++|++++| .+..++.. .+++|+
T Consensus 52 ~~~~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N-~l~~-l~~--~~~L~~L~L~~N-~l~~~~~~-~l~~L~ 123 (487)
T 3oja_A 52 ADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNN-YVQE-LLV--GPSIETLHAANN-NISRVSCS-RGQGKK 123 (487)
T ss_dssp GGGTTCTTCCEEECTTSC-CEEEEE-CTTCTTCCEEECCSS-EEEE-EEE--CTTCCEEECCSS-CCCCEEEC-CCSSCE
T ss_pred HHHhCCCCCCEEEeeCCC-CCCCcc-cccCCCCCEEEecCC-cCCC-CCC--CCCcCEEECcCC-cCCCCCcc-ccCCCC
Confidence 467889999999999874 555544 788999999999985 4433 445 689999999986 55555443 458999
Q ss_pred EEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCCC---CCccccceEEeeccCCccccCcceeeeCCCCCC
Q 019416 114 RLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPIN---QLPATLRHLRIVNCMNLKSLGESSKIRNCDSVV 188 (341)
Q Consensus 114 ~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~---~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~ 188 (341)
.|++++|..... .|..++ ++|+.|+++++ .++..+.. ..+++|+.|+++++. +..++.
T Consensus 124 ~L~L~~N~l~~~----~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~----------- 186 (487)
T 3oja_A 124 NIYLANNKITML----RDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNF-IYDVKG----------- 186 (487)
T ss_dssp EEECCSSCCCSG----GGBCGGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSC-CCEEEC-----------
T ss_pred EEECCCCCCCCC----CchhhcCCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCCCc-cccccc-----------
Confidence 999999975443 454444 89999999985 55554332 246899999999864 443322
Q ss_pred cCCCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccc-
Q 019416 189 GPEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLM- 267 (341)
Q Consensus 189 ~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~- 267 (341)
. ..+++|+.|+++++ .+..+|..+..+++|+.|++++| .+..+|.....+++|+.|++++++ +.
T Consensus 187 ----------~--~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~-l~c 251 (487)
T 3oja_A 187 ----------Q--VVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNG-FHC 251 (487)
T ss_dssp ----------C--CCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCC-BCH
T ss_pred ----------c--ccCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCC-CcC
Confidence 0 02346999999985 56677777888999999999996 466777765556799999999865 54
Q ss_pred -cchhhhccCCCcCeEeec
Q 019416 268 -SLPHQIHKATSLQDLSVS 285 (341)
Q Consensus 268 -~l~~~l~~l~~L~~L~l~ 285 (341)
.+|..+..++.|+.+.+.
T Consensus 252 ~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 252 GTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred cchHHHHHhCCCCcEEecc
Confidence 567777888888887775
No 74
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.47 E-value=5.7e-15 Score=139.01 Aligned_cols=285 Identities=19% Similarity=0.260 Sum_probs=159.7
Q ss_pred CCCCCCCcCeEEcCCCCCCccc-ccc-ccCCC----CccEEeccCCCCchh-----h---hcccCCCCcceEeeecCCCC
Q 019416 35 GIRTGETLESLEIDNLSSLASF-LRS-ELAAT----TVKQLKINKCPDLEV-----L---LHRMAYTSLEYLEFSSCLFF 100 (341)
Q Consensus 35 ~l~~~~~L~~L~l~~~~~~~~~-~~~-~~~l~----~L~~L~l~~~~~l~~-----~---~~~~~l~~L~~L~l~~~~~l 100 (341)
.+..+++|++|+++++. ++.. +.. ...++ +|++|++++|. +.+ + +.. +++|++|++++|. +
T Consensus 51 ~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~--~~~L~~L~Ls~n~-i 125 (461)
T 1z7x_W 51 ALRVNPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRT--LPTLQELHLSDNL-L 125 (461)
T ss_dssp HHHTCTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTS--CTTCCEEECCSSB-C
T ss_pred HHHhCCCcCEEeCCCCc-CChHHHHHHHHHHhhCCCceeEEEccCCC-CCHHHHHHHHHHHcc--CCceeEEECCCCc-C
Confidence 35567888888888764 3321 211 12233 68888888753 331 2 667 7788888887753 3
Q ss_pred ccccC-------CCCCCCccEEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCCC-------CCccccceE
Q 019416 101 SNSKQ-------DYFPTTLKRLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPIN-------QLPATLRHL 164 (341)
Q Consensus 101 ~~~~~-------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~-------~~~~~L~~L 164 (341)
..... ....++|++|++++|.........++..+. ++|++|+++++. ++..... ...++|++|
T Consensus 126 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L 204 (461)
T 1z7x_W 126 GDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEAL 204 (461)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEE
T ss_pred chHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEE
Confidence 32111 111346777777777533211111333332 677777777643 4332111 013467777
Q ss_pred EeeccCCccc-----cCc---------ceeeeCCCCCCcCCCccccccccc---ccccccceEeeccCcCCCc-----cc
Q 019416 165 RIVNCMNLKS-----LGE---------SSKIRNCDSVVGPEGESSLENMTS---SHTLELRELEIWDCLELEF-----LP 222 (341)
Q Consensus 165 ~l~~~~~l~~-----~~~---------~l~l~~~~~l~~~~~~~~~~~l~~---~~~~~L~~L~l~~~~~l~~-----l~ 222 (341)
+++++. +.. ++. .++++++. +.+ .++..+.. ..+++|+.|++++| .+.. ++
T Consensus 205 ~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~----~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~ 277 (461)
T 1z7x_W 205 KLESCG-VTSDNCRDLCGIVASKASLRELALGSNK-LGD----VGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLC 277 (461)
T ss_dssp ECTTSC-CBTTHHHHHHHHHHHCTTCCEEECCSSB-CHH----HHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHH
T ss_pred EccCCC-CcHHHHHHHHHHHHhCCCccEEeccCCc-CCh----HHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHH
Confidence 776652 222 111 33333332 111 00000100 02446999999987 4444 56
Q ss_pred ccCCCCCCcCeEEeecCCCCce-----ecCC-CCCCCCcceEecccCccccc-----chhhhccCCCcCeEeecCCCCCc
Q 019416 223 EDMHNFTDLNLLSISNCPSLES-----FPEG-GLPNTSLTSLLISECENLMS-----LPHQIHKATSLQDLSVSGCPSLM 291 (341)
Q Consensus 223 ~~~~~l~~L~~L~l~~c~~l~~-----~~~~-~~~~~~L~~L~l~~~~~l~~-----l~~~l~~l~~L~~L~l~~c~~l~ 291 (341)
..+..+++|++|+++++. +.. +... ..+.++|++|++++|. ++. ++..+..+++|++|++++| .+.
T Consensus 278 ~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~ 354 (461)
T 1z7x_W 278 RVLRAKESLKELSLAGNE-LGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLE 354 (461)
T ss_dssp HHHHHCTTCCEEECTTCC-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCH
T ss_pred HHHhhCCCcceEECCCCC-CchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccc
Confidence 666778899999998864 432 1110 1112489999999875 543 4667778899999999886 454
Q ss_pred cCCCC-------CCCCCccEEEeecCCCCC----ccccccccCCCceeEEEEeCCCC
Q 019416 292 SFPHG-------GLPPNLISLGIIDCENLI----PLSQWELHKLKHLNKYTILGGLP 337 (341)
Q Consensus 292 ~~~~~-------~~~~~L~~L~l~~c~~~~----~~~~~~i~~~~~L~~l~l~~~C~ 337 (341)
+.... ...++|++|++++|..-. ..+. .+.++++|++|++++ |+
T Consensus 355 ~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~L~~L~l~~-N~ 409 (461)
T 1z7x_W 355 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA-TLLANHSLRELDLSN-NC 409 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH-HHHHCCCCCEEECCS-SS
T ss_pred cccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHH-HHHhCCCccEEECCC-CC
Confidence 33211 114689999999885443 3333 367789999999998 63
No 75
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.46 E-value=4.9e-13 Score=119.34 Aligned_cols=194 Identities=10% Similarity=0.141 Sum_probs=141.4
Q ss_pred ccCCCCccEEeccCCCCchhh--hcccCCCCcceEeeecCCCCccccCCCCCCCccEEEEeCCCChHHHHHHhhhhcc-c
Q 019416 60 ELAATTVKQLKINKCPDLEVL--LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLKRLKICDCTNAELILKVLMDQKG-L 136 (341)
Q Consensus 60 ~~~l~~L~~L~l~~~~~l~~~--~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~ 136 (341)
...+++|++|++++| .+..+ +.. +++|++|++++| .+..++....+++|++|++++|. +.. ++.... +
T Consensus 37 ~~~l~~L~~L~l~~~-~i~~l~~~~~--l~~L~~L~L~~n-~i~~~~~~~~l~~L~~L~L~~n~-l~~----~~~~~~l~ 107 (308)
T 1h6u_A 37 QADLDGITTLSAFGT-GVTTIEGVQY--LNNLIGLELKDN-QITDLAPLKNLTKITELELSGNP-LKN----VSAIAGLQ 107 (308)
T ss_dssp HHHHHTCCEEECTTS-CCCCCTTGGG--CTTCCEEECCSS-CCCCCGGGTTCCSCCEEECCSCC-CSC----CGGGTTCT
T ss_pred HHHcCCcCEEEeeCC-CccCchhhhc--cCCCCEEEccCC-cCCCChhHccCCCCCEEEccCCc-CCC----chhhcCCC
Confidence 345789999999985 55555 788 999999999986 66666666678999999999986 444 543222 8
Q ss_pred ccceEeecCCCCccccCCCCCccccceEEeeccCCccccCcceeeeCCCCCCcCCCcccccccccccccccceEeeccCc
Q 019416 137 ALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVGPEGESSLENMTSSHTLELRELEIWDCL 216 (341)
Q Consensus 137 ~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~ 216 (341)
+|++|+++++ .++.++....+++|+.|+++++. +..++. + ..+++|+.|+++++
T Consensus 108 ~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~-l~~~~~---------------------l--~~l~~L~~L~l~~n- 161 (308)
T 1h6u_A 108 SIKTLDLTST-QITDVTPLAGLSNLQVLYLDLNQ-ITNISP---------------------L--AGLTNLQYLSIGNA- 161 (308)
T ss_dssp TCCEEECTTS-CCCCCGGGTTCTTCCEEECCSSC-CCCCGG---------------------G--GGCTTCCEEECCSS-
T ss_pred CCCEEECCCC-CCCCchhhcCCCCCCEEECCCCc-cCcCcc---------------------c--cCCCCccEEEccCC-
Confidence 9999999885 56666655667889999998763 333321 1 13446999999986
Q ss_pred CCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccchhhhccCCCcCeEeecCCCCCccCC
Q 019416 217 ELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQIHKATSLQDLSVSGCPSLMSFP 294 (341)
Q Consensus 217 ~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~ 294 (341)
.+..++. +..+++|+.|+++++. +..++. ...+++|++|+++++ .++.++ .+..+++|+.|+++++ .+...+
T Consensus 162 ~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~L~~N-~l~~~~-~l~~l~~L~~L~l~~N-~i~~~~ 233 (308)
T 1h6u_A 162 QVSDLTP-LANLSKLTTLKADDNK-ISDISP-LASLPNLIEVHLKNN-QISDVS-PLANTSNLFIVTLTNQ-TITNQP 233 (308)
T ss_dssp CCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECTTS-CCCBCG-GGTTCTTCCEEEEEEE-EEECCC
T ss_pred cCCCChh-hcCCCCCCEEECCCCc-cCcChh-hcCCCCCCEEEccCC-ccCccc-cccCCCCCCEEEccCC-eeecCC
Confidence 4556654 7788999999999864 454443 223469999999986 577777 4788899999999875 455443
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.46 E-value=3e-12 Score=111.95 Aligned_cols=191 Identities=22% Similarity=0.261 Sum_probs=135.8
Q ss_pred CcceEeeecCCCCccccCCCCCCCccEEEEeCCCChHHHHHHhhh-hcc--cccceEeecCCCCccccCCC--CCccccc
Q 019416 88 SLEYLEFSSCLFFSNSKQDYFPTTLKRLKICDCTNAELILKVLMD-QKG--LALESLEVDGCSSLFSLPIN--QLPATLR 162 (341)
Q Consensus 88 ~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~--~~L~~L~l~~~~~l~~l~~~--~~~~~L~ 162 (341)
+.+.+++++ ..+..+|. ..++++++|+++++. +.. ++. .+. ++|++|++++ +.++.++.. ..+++|+
T Consensus 17 ~~~~l~~~~-~~l~~ip~-~~~~~l~~L~l~~n~-l~~----~~~~~~~~l~~L~~L~l~~-n~l~~i~~~~~~~l~~L~ 88 (270)
T 2o6q_A 17 NKNSVDCSS-KKLTAIPS-NIPADTKKLDLQSNK-LSS----LPSKAFHRLTKLRLLYLND-NKLQTLPAGIFKELKNLE 88 (270)
T ss_dssp TTTEEECTT-SCCSSCCS-CCCTTCSEEECCSSC-CSC----CCTTSSSSCTTCCEEECCS-SCCSCCCTTTTSSCTTCC
T ss_pred CCCEEEccC-CCCCccCC-CCCCCCCEEECcCCC-CCe----eCHHHhcCCCCCCEEECCC-CccCeeChhhhcCCCCCC
Confidence 467888876 46777775 345789999999986 344 443 333 8999999988 467777764 4568899
Q ss_pred eEEeeccCCccccCcceeeeCCCCCCcCCCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCC
Q 019416 163 HLRIVNCMNLKSLGESSKIRNCDSVVGPEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSL 242 (341)
Q Consensus 163 ~L~l~~~~~l~~~~~~l~l~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l 242 (341)
+|+++++. +..++.. . + ..+++|+.|+++++.-....+..+..+++|++|+++++ .+
T Consensus 89 ~L~l~~n~-l~~~~~~--------------~-----~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l 145 (270)
T 2o6q_A 89 TLWVTDNK-LQALPIG--------------V-----F--DQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-EL 145 (270)
T ss_dssp EEECCSSC-CCCCCTT--------------T-----T--TTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CC
T ss_pred EEECCCCc-CCcCCHh--------------H-----c--ccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC-cC
Confidence 99998753 4433320 0 1 13446999999986433333456788899999999986 46
Q ss_pred ceecCCC-CCCCCcceEecccCcccccchh-hhccCCCcCeEeecCCCCCccCCCCCC--CCCccEEEeecCC
Q 019416 243 ESFPEGG-LPNTSLTSLLISECENLMSLPH-QIHKATSLQDLSVSGCPSLMSFPHGGL--PPNLISLGIIDCE 311 (341)
Q Consensus 243 ~~~~~~~-~~~~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~~~~~~~--~~~L~~L~l~~c~ 311 (341)
..++... ..+++|++|+++++ .++.++. .+..+++|++|+++++ .++.++...+ .++|+.|++.+++
T Consensus 146 ~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 146 QSLPKGVFDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccCHhHccCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence 6666543 33579999999986 5777765 4788899999999885 6777776533 5789999998865
No 77
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.45 E-value=1.3e-14 Score=136.48 Aligned_cols=130 Identities=15% Similarity=0.210 Sum_probs=86.4
Q ss_pred CCCCCCcCeEEcCCCCCCc----cccccccCCCCccEEeccCCCCchhh-----hcccCCC----CcceEeeecCCCCcc
Q 019416 36 IRTGETLESLEIDNLSSLA----SFLRSELAATTVKQLKINKCPDLEVL-----LHRMAYT----SLEYLEFSSCLFFSN 102 (341)
Q Consensus 36 l~~~~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~l~~~-----~~~~~l~----~L~~L~l~~~~~l~~ 102 (341)
+..+++|++|++++|.... .++..+..+++|++|+++++ .+.+. ... ++ +|++|++++| .+..
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~--l~~~~~~L~~L~L~~n-~i~~ 99 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQG--LQTPSCKIQKLSLQNC-CLTG 99 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHT--TCSTTCCCCEEECTTS-CCBG
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHHHH--HhhCCCceeEEEccCC-CCCH
Confidence 5678999999999885322 33455667899999999995 55443 444 55 7999999987 4442
Q ss_pred -----cc-CCCCCCCccEEEEeCCCChHHHHHHhhhhcc---cccceEeecCCCCccccC-----CC-CCccccceEEee
Q 019416 103 -----SK-QDYFPTTLKRLKICDCTNAELILKVLMDQKG---LALESLEVDGCSSLFSLP-----IN-QLPATLRHLRIV 167 (341)
Q Consensus 103 -----~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~l~~l~-----~~-~~~~~L~~L~l~ 167 (341)
++ ....+++|++|++++|.........+..... ++|++|++++| .++... .. ...++|++|+++
T Consensus 100 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~ 178 (461)
T 1z7x_W 100 AGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAKPDFKELTVS 178 (461)
T ss_dssp GGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCTTCCEEECC
T ss_pred HHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHHHHHHHHhhCCCCCEEECc
Confidence 22 2345789999999999843321111222222 57999999986 444322 11 234789999998
Q ss_pred ccC
Q 019416 168 NCM 170 (341)
Q Consensus 168 ~~~ 170 (341)
++.
T Consensus 179 ~n~ 181 (461)
T 1z7x_W 179 NND 181 (461)
T ss_dssp SSB
T ss_pred CCC
Confidence 864
No 78
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.45 E-value=1.9e-14 Score=129.83 Aligned_cols=233 Identities=15% Similarity=0.190 Sum_probs=145.9
Q ss_pred CCcCeEEcCCCCCCccccccccCC--CCccEEeccCCCCchhh---hcccCCCCcceEeeecCCCCcc--ccC-CCCCCC
Q 019416 40 ETLESLEIDNLSSLASFLRSELAA--TTVKQLKINKCPDLEVL---LHRMAYTSLEYLEFSSCLFFSN--SKQ-DYFPTT 111 (341)
Q Consensus 40 ~~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~l~~~---~~~~~l~~L~~L~l~~~~~l~~--~~~-~~~~~~ 111 (341)
..+++++++++.. . +..+..+ ++++.|+++++ .+... +.. +++|++|++++|. +.. ++. ...+++
T Consensus 47 ~~~~~l~l~~~~~-~--~~~~~~~~~~~l~~L~l~~n-~l~~~~~~~~~--~~~L~~L~L~~~~-l~~~~~~~~~~~~~~ 119 (336)
T 2ast_B 47 SLWQTLDLTGKNL-H--PDVTGRLLSQGVIAFRCPRS-FMDQPLAEHFS--PFRVQHMDLSNSV-IEVSTLHGILSQCSK 119 (336)
T ss_dssp TTSSEEECTTCBC-C--HHHHHHHHHTTCSEEECTTC-EECSCCCSCCC--CBCCCEEECTTCE-ECHHHHHHHHTTBCC
T ss_pred hhheeeccccccC-C--HHHHHhhhhccceEEEcCCc-cccccchhhcc--CCCCCEEEccCCC-cCHHHHHHHHhhCCC
Confidence 3478889887532 2 2334444 78899998884 44444 455 8889999998864 332 332 345788
Q ss_pred ccEEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccc--cCCC-CCccccceEEeeccCCccc--cCcceeeeCC
Q 019416 112 LKRLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFS--LPIN-QLPATLRHLRIVNCMNLKS--LGESSKIRNC 184 (341)
Q Consensus 112 L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~--l~~~-~~~~~L~~L~l~~~~~l~~--~~~~l~l~~~ 184 (341)
|++|++++|..... .+..+. ++|++|++++|..++. ++.. ..+++|++|++++|..+.. ++..
T Consensus 120 L~~L~L~~~~l~~~----~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~------ 189 (336)
T 2ast_B 120 LQNLSLEGLRLSDP----IVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA------ 189 (336)
T ss_dssp CSEEECTTCBCCHH----HHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH------
T ss_pred CCEEeCcCcccCHH----HHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH------
Confidence 99999998875444 444444 8899999988766653 3322 3457888888888754442 1110
Q ss_pred CCCCcCCCccccccccccccc-ccceEeeccCc-CC--CcccccCCCCCCcCeEEeecCCCCc-eecCCCCCCCCcceEe
Q 019416 185 DSVVGPEGESSLENMTSSHTL-ELRELEIWDCL-EL--EFLPEDMHNFTDLNLLSISNCPSLE-SFPEGGLPNTSLTSLL 259 (341)
Q Consensus 185 ~~l~~~~~~~~~~~l~~~~~~-~L~~L~l~~~~-~l--~~l~~~~~~l~~L~~L~l~~c~~l~-~~~~~~~~~~~L~~L~ 259 (341)
+ ..++ +|++|++++|. .+ ..++..+..+++|+.|++++|..++ ..+.....+++|++|+
T Consensus 190 --------------~--~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~ 253 (336)
T 2ast_B 190 --------------V--AHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLS 253 (336)
T ss_dssp --------------H--HHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEE
T ss_pred --------------H--HhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEee
Confidence 1 1344 58888888874 33 3345566677888999888876443 2222223346888888
Q ss_pred cccCcccccc-hhhhccCCCcCeEeecCCCCCccCCCCC---CCCCccEEEeecC
Q 019416 260 ISECENLMSL-PHQIHKATSLQDLSVSGCPSLMSFPHGG---LPPNLISLGIIDC 310 (341)
Q Consensus 260 l~~~~~l~~l-~~~l~~l~~L~~L~l~~c~~l~~~~~~~---~~~~L~~L~l~~c 310 (341)
+++|..+..- ...+..+++|+.|++++| ++..+ +..+++.|++.++
T Consensus 254 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-----i~~~~~~~l~~~l~~L~l~~n 303 (336)
T 2ast_B 254 LSRCYDIIPETLLELGEIPTLKTLQVFGI-----VPDGTLQLLKEALPHLQINCS 303 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTS-----SCTTCHHHHHHHSTTSEESCC
T ss_pred CCCCCCCCHHHHHHHhcCCCCCEEeccCc-----cCHHHHHHHHhhCcceEEecc
Confidence 8887533211 124677888888888887 33322 2234666667443
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.45 E-value=4.9e-13 Score=117.13 Aligned_cols=201 Identities=17% Similarity=0.134 Sum_probs=122.5
Q ss_pred CCCCCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh--hcccCCCCcceEeeecCCCCccccC--CCCCC
Q 019416 35 GIRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL--LHRMAYTSLEYLEFSSCLFFSNSKQ--DYFPT 110 (341)
Q Consensus 35 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~ 110 (341)
....+++|+.|+++++. ++.++ .+..+++|++|++++| .+..+ +.. +++|++|++++| .+..++. ...++
T Consensus 36 ~~~~l~~L~~L~l~~~~-i~~~~-~l~~l~~L~~L~l~~n-~l~~~~~l~~--l~~L~~L~L~~n-~l~~~~~~~~~~l~ 109 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSD-IKSVQ-GIQYLPNVRYLALGGN-KLHDISALKE--LTNLTYLILTGN-QLQSLPNGVFDKLT 109 (272)
T ss_dssp CHHHHTTCCEEECTTSC-CCCCT-TGGGCTTCCEEECTTS-CCCCCGGGTT--CTTCCEEECTTS-CCCCCCTTTTTTCT
T ss_pred ccccccceeeeeeCCCC-ccccc-ccccCCCCcEEECCCC-CCCCchhhcC--CCCCCEEECCCC-ccCccChhHhcCCc
Confidence 34568889999998763 44443 3667889999999884 45555 777 888999999876 5655554 34478
Q ss_pred CccEEEEeCCCChHHHHHHhhhh-cc--cccceEeecCCCCccccCCC--CCccccceEEeeccCCccccCcceeeeCCC
Q 019416 111 TLKRLKICDCTNAELILKVLMDQ-KG--LALESLEVDGCSSLFSLPIN--QLPATLRHLRIVNCMNLKSLGESSKIRNCD 185 (341)
Q Consensus 111 ~L~~L~l~~~~~~~~~~~~~~~~-~~--~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~ 185 (341)
+|++|++++|.. .. ++.. +. ++|++|+++++ .++.++.. ..+++|+.|+++++. +..++...
T Consensus 110 ~L~~L~L~~n~l-~~----~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~------ 176 (272)
T 3rfs_A 110 NLKELVLVENQL-QS----LPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGV------ 176 (272)
T ss_dssp TCCEEECTTSCC-CC----CCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT------
T ss_pred CCCEEECCCCcC-Cc----cCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCC-cCccCHHH------
Confidence 888888888763 33 3332 22 77888888774 56666543 345677777777652 33222100
Q ss_pred CCCcCCCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcc
Q 019416 186 SVVGPEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECEN 265 (341)
Q Consensus 186 ~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~ 265 (341)
+ ..+++|+.|+++++.-....+..+..+++|+.|++++++-.. .+++|+.++++.+..
T Consensus 177 -------------~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~ 234 (272)
T 3rfs_A 177 -------------F--DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKH 234 (272)
T ss_dssp -------------T--TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHT
T ss_pred -------------h--cCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhC
Confidence 1 123357777777754333333445667777777777654211 123666666665433
Q ss_pred cccchhhhccC
Q 019416 266 LMSLPHQIHKA 276 (341)
Q Consensus 266 l~~l~~~l~~l 276 (341)
...+|..+..+
T Consensus 235 ~g~ip~~~~~~ 245 (272)
T 3rfs_A 235 SGVVRNSAGSV 245 (272)
T ss_dssp GGGBBCTTSCB
T ss_pred CCcccCccccc
Confidence 33455544443
No 80
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.44 E-value=1.2e-12 Score=114.78 Aligned_cols=191 Identities=17% Similarity=0.240 Sum_probs=101.1
Q ss_pred CCcCeEEcCCCCCCccccc-cccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccC--CCCCCCc
Q 019416 40 ETLESLEIDNLSSLASFLR-SELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQ--DYFPTTL 112 (341)
Q Consensus 40 ~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L 112 (341)
++|++|+++++ .++.++. .+..+++|++|++++| .+..+ +.. +++|++|+++++ .+..++. ...+++|
T Consensus 28 ~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~--l~~L~~L~L~~n-~l~~~~~~~~~~l~~L 102 (276)
T 2z62_A 28 FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQS--LSHLSTLILTGN-PIQSLALGAFSGLSSL 102 (276)
T ss_dssp TTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTT--CTTCCEEECTTC-CCCEECTTTTTTCTTC
T ss_pred CCccEEECCCC-cccccCHhHhccccCCcEEECCCC-cCCccCHHHccC--CcCCCEEECCCC-ccCccChhhhcCCccc
Confidence 45777888765 4455443 4666777777777774 44333 556 677777777764 4443332 2335666
Q ss_pred cEEEEeCCCChHHHHHHhhh-hcccccceEeecCCCCccccCCCCCccccceEEeeccCCccc--cCcceeeeCCCCCCc
Q 019416 113 KRLKICDCTNAELILKVLMD-QKGLALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKS--LGESSKIRNCDSVVG 189 (341)
Q Consensus 113 ~~L~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~--~~~~l~l~~~~~l~~ 189 (341)
++|++++|.... ++. .+ ..+++|+.|+++++. +.. +|..
T Consensus 103 ~~L~l~~n~l~~-----~~~~~~---------------------~~l~~L~~L~l~~n~-l~~~~l~~~----------- 144 (276)
T 2z62_A 103 QKLVAVETNLAS-----LENFPI---------------------GHLKTLKELNVAHNL-IQSFKLPEY----------- 144 (276)
T ss_dssp CEEECTTSCCCC-----STTCCC---------------------TTCTTCCEEECCSSC-CCCCCCCGG-----------
T ss_pred cEEECCCCCccc-----cCchhc---------------------ccCCCCCEEECcCCc-cceecCchh-----------
Confidence 666666654211 111 11 223445555554431 111 1110
Q ss_pred CCCcccccccccccccccceEeeccCcCCCcc-cccCCCCCCcC----eEEeecCCCCceecCCCCCCCCcceEecccCc
Q 019416 190 PEGESSLENMTSSHTLELRELEIWDCLELEFL-PEDMHNFTDLN----LLSISNCPSLESFPEGGLPNTSLTSLLISECE 264 (341)
Q Consensus 190 ~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~----~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~ 264 (341)
+. .+++|+.|+++++. +..+ +..+..++.|+ .|+++++ .+..++...+...+|++|+++++
T Consensus 145 ---------~~--~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~l~l~L~ls~n-~l~~~~~~~~~~~~L~~L~L~~n- 210 (276)
T 2z62_A 145 ---------FS--NLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAFKEIRLKELALDTN- 210 (276)
T ss_dssp ---------GG--GCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCEEEECCSS-CCCEECTTSSCSCCEEEEECCSS-
T ss_pred ---------hc--cCCCCCEEECCCCC-CCcCCHHHhhhhhhccccceeeecCCC-cccccCccccCCCcccEEECCCC-
Confidence 00 22346666666643 2222 23344344444 6677664 35555555444457777777775
Q ss_pred ccccchhh-hccCCCcCeEeecCC
Q 019416 265 NLMSLPHQ-IHKATSLQDLSVSGC 287 (341)
Q Consensus 265 ~l~~l~~~-l~~l~~L~~L~l~~c 287 (341)
.++.+|.. +..+++|+.|+++++
T Consensus 211 ~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 211 QLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp CCSCCCTTTTTTCCSCCEEECCSS
T ss_pred ceeecCHhHhcccccccEEEccCC
Confidence 46666543 466777777777764
No 81
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.44 E-value=1.3e-14 Score=130.81 Aligned_cols=196 Identities=16% Similarity=0.205 Sum_probs=127.9
Q ss_pred CCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchh--h---hcccCCCCcceEeeecCCCCcccc-CCCCCCCcc
Q 019416 40 ETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEV--L---LHRMAYTSLEYLEFSSCLFFSNSK-QDYFPTTLK 113 (341)
Q Consensus 40 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~--~---~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~ 113 (341)
++++.|++.++ .+...+.....+++|++|++++|. +.. + +.. +++|++|++++|......+ ....+++|+
T Consensus 70 ~~l~~L~l~~n-~l~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~~~~--~~~L~~L~L~~~~l~~~~~~~l~~~~~L~ 145 (336)
T 2ast_B 70 QGVIAFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSV-IEVSTLHGILSQ--CSKLQNLSLEGLRLSDPIVNTLAKNSNLV 145 (336)
T ss_dssp TTCSEEECTTC-EECSCCCSCCCCBCCCEEECTTCE-ECHHHHHHHHTT--BCCCSEEECTTCBCCHHHHHHHTTCTTCS
T ss_pred ccceEEEcCCc-cccccchhhccCCCCCEEEccCCC-cCHHHHHHHHhh--CCCCCEEeCcCcccCHHHHHHHhcCCCCC
Confidence 78899999875 444544556678999999999864 432 2 778 8999999998874222222 234478899
Q ss_pred EEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccc--cCCC-CCcc-ccceEEeeccC-Ccc--ccCcceeeeCC
Q 019416 114 RLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFS--LPIN-QLPA-TLRHLRIVNCM-NLK--SLGESSKIRNC 184 (341)
Q Consensus 114 ~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~--l~~~-~~~~-~L~~L~l~~~~-~l~--~~~~~l~l~~~ 184 (341)
+|++++|..+... .++..+. ++|++|++++|..++. ++.. ..++ +|++|+++++. .+. .++..
T Consensus 146 ~L~L~~~~~l~~~--~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~------ 217 (336)
T 2ast_B 146 RLNLSGCSGFSEF--ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL------ 217 (336)
T ss_dssp EEECTTCBSCCHH--HHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH------
T ss_pred EEECCCCCCCCHH--HHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHH------
Confidence 9999998544420 0344333 8899999988756654 2222 3456 89999998874 232 11110
Q ss_pred CCCCcCCCcccccccccccccccceEeeccCcCCC-cccccCCCCCCcCeEEeecCCCCceecC-CCCCCCCcceEeccc
Q 019416 185 DSVVGPEGESSLENMTSSHTLELRELEIWDCLELE-FLPEDMHNFTDLNLLSISNCPSLESFPE-GGLPNTSLTSLLISE 262 (341)
Q Consensus 185 ~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~-~l~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~l~~ 262 (341)
+ ..+++|+.|++++|..++ ..+..+..+++|+.|++++|..+..... ....+++|++|++++
T Consensus 218 --------------~--~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 281 (336)
T 2ast_B 218 --------------V--RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 281 (336)
T ss_dssp --------------H--HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred --------------H--hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccC
Confidence 0 134569999999887443 4456777888999999998864322110 112246899999998
Q ss_pred C
Q 019416 263 C 263 (341)
Q Consensus 263 ~ 263 (341)
|
T Consensus 282 ~ 282 (336)
T 2ast_B 282 I 282 (336)
T ss_dssp S
T ss_pred c
Confidence 7
No 82
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.43 E-value=5.3e-14 Score=136.59 Aligned_cols=282 Identities=20% Similarity=0.159 Sum_probs=146.1
Q ss_pred CCCCcCeEEcCCCCCCcc--ccccccCCCCccEEeccCCCCchh-----h---hcccCCCCcceEeeecCC-CCc--ccc
Q 019416 38 TGETLESLEIDNLSSLAS--FLRSELAATTVKQLKINKCPDLEV-----L---LHRMAYTSLEYLEFSSCL-FFS--NSK 104 (341)
Q Consensus 38 ~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~l~~-----~---~~~~~l~~L~~L~l~~~~-~l~--~~~ 104 (341)
.+++|++|++++|..++. ++.....+++|++|++++|. +.+ + ... +++|++|++++|. .+. .+.
T Consensus 128 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~--~~~L~~L~l~~~~~~~~~~~l~ 204 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDT--YTSLVSLNISCLASEVSFSALE 204 (594)
T ss_dssp HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTT--CCCCCEEECTTCCSCCCHHHHH
T ss_pred hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhc--CCcCcEEEecccCCcCCHHHHH
Confidence 578999999998865544 33333468899999998864 322 1 345 7789999988764 111 111
Q ss_pred C-CCCCCCccEEEEeCCCChHHHHHHhhhhcc--cccceEeecCC-------------------CCcccc----------
Q 019416 105 Q-DYFPTTLKRLKICDCTNAELILKVLMDQKG--LALESLEVDGC-------------------SSLFSL---------- 152 (341)
Q Consensus 105 ~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~-------------------~~l~~l---------- 152 (341)
. ...+++|++|++++|..+.. ++..+. ++|++|++..+ +.++.+
T Consensus 205 ~l~~~~~~L~~L~L~~~~~~~~----l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~ 280 (594)
T 2p1m_B 205 RLVTRCPNLKSLKLNRAVPLEK----LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAY 280 (594)
T ss_dssp HHHHHCTTCCEEECCTTSCHHH----HHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGG
T ss_pred HHHHhCCCCcEEecCCCCcHHH----HHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhh
Confidence 1 11258888888888866655 444443 66666654332 222211
Q ss_pred -CCC-CCccccceEEeeccCCcccc---------Cc--ceeeeCCCCCCcCCCcccccccccccccccceEeec------
Q 019416 153 -PIN-QLPATLRHLRIVNCMNLKSL---------GE--SSKIRNCDSVVGPEGESSLENMTSSHTLELRELEIW------ 213 (341)
Q Consensus 153 -~~~-~~~~~L~~L~l~~~~~l~~~---------~~--~l~l~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~------ 213 (341)
+.. ..+++|++|++++|. +... +. .+.+++| ..+ .++..+. ..+++|++|+++
T Consensus 281 l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~--~~~----~~l~~l~-~~~~~L~~L~L~~~~~~g 352 (594)
T 2p1m_B 281 LPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY--IED----AGLEVLA-STCKDLRELRVFPSEPFV 352 (594)
T ss_dssp GGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHH----HHHHHHH-HHCTTCCEEEEECSCTTC
T ss_pred HHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc--cCH----HHHHHHH-HhCCCCCEEEEecCcccc
Confidence 000 123566666666554 2210 00 2222222 000 0000000 012334444442
Q ss_pred ---------------------------cCcCCCcc-cccC-CCCCCcCeEEee-----cCCCCceecCC------CCCCC
Q 019416 214 ---------------------------DCLELEFL-PEDM-HNFTDLNLLSIS-----NCPSLESFPEG------GLPNT 253 (341)
Q Consensus 214 ---------------------------~~~~l~~l-~~~~-~~l~~L~~L~l~-----~c~~l~~~~~~------~~~~~ 253 (341)
+|..+... +..+ ..+++|+.|+++ +|..++..+.. ...++
T Consensus 353 ~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~ 432 (594)
T 2p1m_B 353 MEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCK 432 (594)
T ss_dssp SSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCT
T ss_pred cccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCC
Confidence 22222211 1111 235677777777 44555433210 11134
Q ss_pred CcceEecccCccccc-chhhhc-cCCCcCeEeecCCCCCccCCCC---CCCCCccEEEeecCCCCCccccccccCCCcee
Q 019416 254 SLTSLLISECENLMS-LPHQIH-KATSLQDLSVSGCPSLMSFPHG---GLPPNLISLGIIDCENLIPLSQWELHKLKHLN 328 (341)
Q Consensus 254 ~L~~L~l~~~~~l~~-l~~~l~-~l~~L~~L~l~~c~~l~~~~~~---~~~~~L~~L~l~~c~~~~~~~~~~i~~~~~L~ 328 (341)
+|++|++++ .++. ....+. .+++|+.|++++|. +...... ...++|++|++++|..........+..+++|+
T Consensus 433 ~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 509 (594)
T 2p1m_B 433 DLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMR 509 (594)
T ss_dssp TCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSS
T ss_pred CccEEeecC--cccHHHHHHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCC
Confidence 777777765 2332 122332 37788888887764 3222111 12578999999998763322221245678999
Q ss_pred EEEEeCCCCC
Q 019416 329 KYTILGGLPV 338 (341)
Q Consensus 329 ~l~l~~~C~~ 338 (341)
+|++++ |+.
T Consensus 510 ~L~l~~-~~~ 518 (594)
T 2p1m_B 510 SLWMSS-CSV 518 (594)
T ss_dssp EEEEES-SCC
T ss_pred EEeeeC-CCC
Confidence 999998 864
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.43 E-value=1.2e-11 Score=110.41 Aligned_cols=214 Identities=15% Similarity=0.102 Sum_probs=114.4
Q ss_pred CCccEEeccCCCCchh----h--hcccCCCCcceEeeecCCCCccccCC---CCCCCccEEEEeCCCChHHHHHHhh---
Q 019416 64 TTVKQLKINKCPDLEV----L--LHRMAYTSLEYLEFSSCLFFSNSKQD---YFPTTLKRLKICDCTNAELILKVLM--- 131 (341)
Q Consensus 64 ~~L~~L~l~~~~~l~~----~--~~~~~l~~L~~L~l~~~~~l~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~--- 131 (341)
..++.+.+.++..-.. + .-. +++|++|++++|......+.. ..+++|++|++++|..... .+
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~----~~~~~ 137 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLA--YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATG----RSWLA 137 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHH--HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSST----TSSHH
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcc--cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccch----hhhhH
Confidence 5577888877542211 1 334 667999999887444444443 4578899999998874332 11
Q ss_pred -hhc-c-cccceEeecCCCCccccCCC--CCccccceEEeeccCCccc--cCcceeeeCCCCCCcCCCcccccccccccc
Q 019416 132 -DQK-G-LALESLEVDGCSSLFSLPIN--QLPATLRHLRIVNCMNLKS--LGESSKIRNCDSVVGPEGESSLENMTSSHT 204 (341)
Q Consensus 132 -~~~-~-~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~l~~--~~~~l~l~~~~~l~~~~~~~~~~~l~~~~~ 204 (341)
... . ++|++|+++++ .+..++.. ..+++|++|+++++.-... ++... . ...+
T Consensus 138 ~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-------------------~-~~~l 196 (310)
T 4glp_A 138 ELQQWLKPGLKVLSIAQA-HSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAAL-------------------C-PHKF 196 (310)
T ss_dssp HHHTTBCSCCCEEEEECC-SSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTS-------------------C-TTSS
T ss_pred HHHhhhccCCCEEEeeCC-CcchhhHHHhccCCCCCEEECCCCCCccchhhhHHH-------------------h-hhcC
Confidence 111 1 78888888774 45555433 3556777777776532110 10000 0 0123
Q ss_pred cccceEeeccCcCCCcccc----cCCCCCCcCeEEeecCCCCcee-cCCCCCC---CCcceEecccCcccccchhhhccC
Q 019416 205 LELRELEIWDCLELEFLPE----DMHNFTDLNLLSISNCPSLESF-PEGGLPN---TSLTSLLISECENLMSLPHQIHKA 276 (341)
Q Consensus 205 ~~L~~L~l~~~~~l~~l~~----~~~~l~~L~~L~l~~c~~l~~~-~~~~~~~---~~L~~L~l~~~~~l~~l~~~l~~l 276 (341)
++|+.|++++|. ++.++. .+..+++|++|+++++. +... |.....+ ++|++|+++++ .++.+|..+.
T Consensus 197 ~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~-- 271 (310)
T 4glp_A 197 PAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNS-LRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKGLP-- 271 (310)
T ss_dssp CCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSCCC--
T ss_pred CCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCC-CCccchhhHHhccCcCcCCEEECCCC-CCCchhhhhc--
Confidence 357777776653 333332 13445667777776653 3332 3222111 46666666664 4556655442
Q ss_pred CCcCeEeecCCCCCccCCCCCCCCCccEEEeecC
Q 019416 277 TSLQDLSVSGCPSLMSFPHGGLPPNLISLGIIDC 310 (341)
Q Consensus 277 ~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c 310 (341)
++|+.|+++++ .++.++.-..+++|++|+++++
T Consensus 272 ~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 272 AKLRVLDLSSN-RLNRAPQPDELPEVDNLTLDGN 304 (310)
T ss_dssp SCCSCEECCSC-CCCSCCCTTSCCCCSCEECSST
T ss_pred CCCCEEECCCC-cCCCCchhhhCCCccEEECcCC
Confidence 56666666553 4554443333456666666554
No 84
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.42 E-value=6.1e-14 Score=136.14 Aligned_cols=131 Identities=16% Similarity=0.115 Sum_probs=68.4
Q ss_pred ccccceEeeccCcCCCc--ccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEeccc----------Cccccc--c
Q 019416 204 TLELRELEIWDCLELEF--LPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISE----------CENLMS--L 269 (341)
Q Consensus 204 ~~~L~~L~l~~~~~l~~--l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~----------~~~l~~--l 269 (341)
+++|++|++++|. +.. ++..+..+++|+.|+++++-.-..++.....+++|++|++++ |+.++. +
T Consensus 292 ~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~ 370 (592)
T 3ogk_B 292 AAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGL 370 (592)
T ss_dssp GGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHH
T ss_pred cCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHH
Confidence 4457777777665 221 122345566777777763211111111111124777777774 555542 2
Q ss_pred hhhhccCCCcCeEeecCCCCCccCCCC---CCCCCccEEEeec---CCCCCcc-----ccccccCCCceeEEEEeCCCC
Q 019416 270 PHQIHKATSLQDLSVSGCPSLMSFPHG---GLPPNLISLGIID---CENLIPL-----SQWELHKLKHLNKYTILGGLP 337 (341)
Q Consensus 270 ~~~l~~l~~L~~L~l~~c~~l~~~~~~---~~~~~L~~L~l~~---c~~~~~~-----~~~~i~~~~~L~~l~l~~~C~ 337 (341)
+.....+++|++|++ +|+.+...... ...++|++|++.+ |+.++.. ....+..+++|++|+++. |.
T Consensus 371 ~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~-~~ 447 (592)
T 3ogk_B 371 IALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYL-RQ 447 (592)
T ss_dssp HHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEEC-CG
T ss_pred HHHHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEec-CC
Confidence 333455777777777 34555322111 1156788888874 4455531 111145678888888877 65
No 85
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.41 E-value=9.3e-12 Score=108.78 Aligned_cols=115 Identities=21% Similarity=0.212 Sum_probs=64.4
Q ss_pred CcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccCC--CCCCCccE
Q 019416 41 TLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQD--YFPTTLKR 114 (341)
Q Consensus 41 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~ 114 (341)
..+++++++ ..++.+|..+. ++|++|+++++ .+..+ +.. +++|++|+++++ .+..++.. ..+++|++
T Consensus 17 ~~~~l~~~~-~~l~~ip~~~~--~~l~~L~l~~n-~l~~~~~~~~~~--l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~ 89 (270)
T 2o6q_A 17 NKNSVDCSS-KKLTAIPSNIP--ADTKKLDLQSN-KLSSLPSKAFHR--LTKLRLLYLNDN-KLQTLPAGIFKELKNLET 89 (270)
T ss_dssp TTTEEECTT-SCCSSCCSCCC--TTCSEEECCSS-CCSCCCTTSSSS--CTTCCEEECCSS-CCSCCCTTTTSSCTTCCE
T ss_pred CCCEEEccC-CCCCccCCCCC--CCCCEEECcCC-CCCeeCHHHhcC--CCCCCEEECCCC-ccCeeChhhhcCCCCCCE
Confidence 466777776 35566665332 57888888774 44444 666 778888888764 55555542 23677777
Q ss_pred EEEeCCCChHHHHHHhhhhc-c--cccceEeecCCCCccccCCC--CCccccceEEeec
Q 019416 115 LKICDCTNAELILKVLMDQK-G--LALESLEVDGCSSLFSLPIN--QLPATLRHLRIVN 168 (341)
Q Consensus 115 L~l~~~~~~~~~~~~~~~~~-~--~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~ 168 (341)
|+++++. +.. ++... . ++|++|++++ +.++.++.. ..+++|++|++++
T Consensus 90 L~l~~n~-l~~----~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~ 142 (270)
T 2o6q_A 90 LWVTDNK-LQA----LPIGVFDQLVNLAELRLDR-NQLKSLPPRVFDSLTKLTYLSLGY 142 (270)
T ss_dssp EECCSSC-CCC----CCTTTTTTCSSCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EECCCCc-CCc----CCHhHcccccCCCEEECCC-CccCeeCHHHhCcCcCCCEEECCC
Confidence 7777765 222 33221 1 5566666655 234443332 2334444444444
No 86
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.41 E-value=1.2e-12 Score=117.00 Aligned_cols=191 Identities=18% Similarity=0.173 Sum_probs=100.6
Q ss_pred CCCCccEEeccCCCCchhh----h--cccCCCCcceEeeecCCCCccccCC-C-----CCCCccEEEEeCCCChHHHHHH
Q 019416 62 AATTVKQLKINKCPDLEVL----L--HRMAYTSLEYLEFSSCLFFSNSKQD-Y-----FPTTLKRLKICDCTNAELILKV 129 (341)
Q Consensus 62 ~l~~L~~L~l~~~~~l~~~----~--~~~~l~~L~~L~l~~~~~l~~~~~~-~-----~~~~L~~L~l~~~~~~~~~~~~ 129 (341)
.+++|++|++++| .+... + .. +++|++|+++++ .+...|.. . .+++|++|++++|.....
T Consensus 93 ~l~~L~~L~L~~n-~l~~~~~~~~~~~~--l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~---- 164 (312)
T 1wwl_A 93 GISGLQELTLENL-EVTGTAPPPLLEAT--GPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNF---- 164 (312)
T ss_dssp TTSCCCEEEEEEE-BCBSCCCCCSSSCC--SCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCC----
T ss_pred CcCCccEEEccCC-cccchhHHHHHHhc--CCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCCCCccc----
Confidence 4566666666663 33321 2 55 666666666664 33333320 1 126666666666653222
Q ss_pred hhhhcc--cccceEeecCCCCcccc--C-CC--CCccccceEEeeccCCccccCcceeeeCCCCCCcCCCccccccccc-
Q 019416 130 LMDQKG--LALESLEVDGCSSLFSL--P-IN--QLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVGPEGESSLENMTS- 201 (341)
Q Consensus 130 ~~~~~~--~~L~~L~l~~~~~l~~l--~-~~--~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~~~~~~~~~~l~~- 201 (341)
.+..++ ++|++|+++++.....+ + .. ..+++|+.|+++++. +..++. ++.
T Consensus 165 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~---------------------~~~~ 222 (312)
T 1wwl_A 165 SCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSG---------------------VCSA 222 (312)
T ss_dssp CTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHH---------------------HHHH
T ss_pred hHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHH---------------------HHHH
Confidence 223333 66666666664322211 1 11 334566666666642 221111 000
Q ss_pred --ccccccceEeeccCcCCCccc-ccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccchhhhccCCC
Q 019416 202 --SHTLELRELEIWDCLELEFLP-EDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQIHKATS 278 (341)
Q Consensus 202 --~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~ 278 (341)
..+++|+.|+++++.-....| ..+..+++|+.|++++|. ++.+|.... ++|++|+++++ .++.+|. +..+++
T Consensus 223 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N-~l~~~p~-~~~l~~ 297 (312)
T 1wwl_A 223 LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGLP--AKLSVLDLSYN-RLDRNPS-PDELPQ 297 (312)
T ss_dssp HHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCSSCC--SEEEEEECCSS-CCCSCCC-TTTSCE
T ss_pred HHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc-cChhhhhcc--CCceEEECCCC-CCCCChh-HhhCCC
Confidence 022357777777754322222 334456777777777753 555554333 57777777774 5766664 667777
Q ss_pred cCeEeecCC
Q 019416 279 LQDLSVSGC 287 (341)
Q Consensus 279 L~~L~l~~c 287 (341)
|++|+++++
T Consensus 298 L~~L~L~~N 306 (312)
T 1wwl_A 298 VGNLSLKGN 306 (312)
T ss_dssp EEEEECTTC
T ss_pred CCEEeccCC
Confidence 777777763
No 87
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.38 E-value=9.4e-12 Score=109.01 Aligned_cols=193 Identities=23% Similarity=0.219 Sum_probs=108.8
Q ss_pred CCCcceEeeecCCCCccccC--CCCCCCccEEEEeCCCChHHHHHHhhh-hcc--cccceEeecCCCCccccCCC--CCc
Q 019416 86 YTSLEYLEFSSCLFFSNSKQ--DYFPTTLKRLKICDCTNAELILKVLMD-QKG--LALESLEVDGCSSLFSLPIN--QLP 158 (341)
Q Consensus 86 l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~--~~L~~L~l~~~~~l~~l~~~--~~~ 158 (341)
.++|++|+++++ .+..++. ...+++|++|++++|.. .. ++. .+. ++|++|+++++ .++.++.. ..+
T Consensus 27 ~~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~l-~~----~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l 99 (276)
T 2z62_A 27 PFSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEI-QT----IEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGL 99 (276)
T ss_dssp CTTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTCCC-CE----ECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTC
T ss_pred CCCccEEECCCC-cccccCHhHhccccCCcEEECCCCcC-Cc----cCHHHccCCcCCCEEECCCC-ccCccChhhhcCC
Confidence 346888888775 5555543 33467788888887753 33 332 222 77778887763 45555432 445
Q ss_pred cccceEEeeccCCccccCcceeeeCCCCCCcCCCcccccccccccccccceEeeccCcCCC-cccccCCCCCCcCeEEee
Q 019416 159 ATLRHLRIVNCMNLKSLGESSKIRNCDSVVGPEGESSLENMTSSHTLELRELEIWDCLELE-FLPEDMHNFTDLNLLSIS 237 (341)
Q Consensus 159 ~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~-~l~~~~~~l~~L~~L~l~ 237 (341)
++|+.|+++++. +..++. .+...+++|+.|+++++.... .+|..+..+++|++|+++
T Consensus 100 ~~L~~L~l~~n~-l~~~~~---------------------~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls 157 (276)
T 2z62_A 100 SSLQKLVAVETN-LASLEN---------------------FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157 (276)
T ss_dssp TTCCEEECTTSC-CCCSTT---------------------CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC
T ss_pred ccccEEECCCCC-ccccCc---------------------hhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECC
Confidence 677777776642 222211 000133357777777754322 246667777777777777
Q ss_pred cCCCCceecCCCC-CCCCcc----eEecccCcccccchhhhccCCCcCeEeecCCCCCccCCCCC--CCCCccEEEeecC
Q 019416 238 NCPSLESFPEGGL-PNTSLT----SLLISECENLMSLPHQIHKATSLQDLSVSGCPSLMSFPHGG--LPPNLISLGIIDC 310 (341)
Q Consensus 238 ~c~~l~~~~~~~~-~~~~L~----~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~~--~~~~L~~L~l~~c 310 (341)
+|. ++.++...+ .+++|+ +|+++++ .++.++.......+|+.|+++++ .++.++... ..++|++|+++++
T Consensus 158 ~N~-l~~~~~~~~~~l~~L~~l~l~L~ls~n-~l~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 158 SNK-IQSIYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp SSC-CCEECGGGGHHHHTCTTCCEEEECCSS-CCCEECTTSSCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSS
T ss_pred CCC-CCcCCHHHhhhhhhccccceeeecCCC-cccccCccccCCCcccEEECCCC-ceeecCHhHhcccccccEEEccCC
Confidence 753 444433211 123444 6667664 46666554444456777777664 466665542 2567777777743
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.36 E-value=5.5e-12 Score=112.51 Aligned_cols=221 Identities=17% Similarity=0.205 Sum_probs=141.5
Q ss_pred CCCcCeEEcCCCCCCcc-ccc--cccCCCCccEEeccCCCCchhh----h--cccCCCCcceEeeecCCCCccccC----
Q 019416 39 GETLESLEIDNLSSLAS-FLR--SELAATTVKQLKINKCPDLEVL----L--HRMAYTSLEYLEFSSCLFFSNSKQ---- 105 (341)
Q Consensus 39 ~~~L~~L~l~~~~~~~~-~~~--~~~~l~~L~~L~l~~~~~l~~~----~--~~~~l~~L~~L~l~~~~~l~~~~~---- 105 (341)
...++.+.+.++..... +.. ....+++|++|++++|. +... + .. +++|++|++++|......+.
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~--~~~L~~L~Ls~n~i~~~~~~~~~~ 139 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLK-ITGTMPPLPLEAT--GLALSSLRLRNVSWATGRSWLAEL 139 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCC-CBSCCCCCSSSCC--CBCCSSCEEESCCCSSTTSSHHHH
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCE-eccchhhhhhhcc--CCCCCEEEeecccccchhhhhHHH
Confidence 34577888877543211 110 12234679999998853 4333 3 67 88999999988643332221
Q ss_pred -CCCCCCccEEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccc--cCCC---CCccccceEEeeccCCccccCc
Q 019416 106 -DYFPTTLKRLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFS--LPIN---QLPATLRHLRIVNCMNLKSLGE 177 (341)
Q Consensus 106 -~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~--l~~~---~~~~~L~~L~l~~~~~l~~~~~ 177 (341)
...+++|++|++++|..... .+..+. ++|++|+++++..... ++.. ..+++|++|+++++. ++.++.
T Consensus 140 ~~~~~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~ 214 (310)
T 4glp_A 140 QQWLKPGLKVLSIAQAHSPAF----SCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTG 214 (310)
T ss_dssp HTTBCSCCCEEEEECCSSCCC----CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHH
T ss_pred HhhhccCCCEEEeeCCCcchh----hHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHH
Confidence 12378899999998874333 334443 8899999988643321 2211 356789999998863 433221
Q ss_pred ceeeeCCCCCCcCCCcccccccccccccccceEeeccCcCCCcccccCCCC---CCcCeEEeecCCCCceecCCCCCCCC
Q 019416 178 SSKIRNCDSVVGPEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNF---TDLNLLSISNCPSLESFPEGGLPNTS 254 (341)
Q Consensus 178 ~l~l~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l---~~L~~L~l~~c~~l~~~~~~~~~~~~ 254 (341)
.. .. + ...+++|+.|+++++.-....|..+..+ ++|++|++++| .++.+|.... ++
T Consensus 215 ~~--------------~~---l-~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~--~~ 273 (310)
T 4glp_A 215 VC--------------AA---L-AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKGLP--AK 273 (310)
T ss_dssp HH--------------HH---H-HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSCCC--SC
T ss_pred HH--------------HH---H-HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-CCCchhhhhc--CC
Confidence 00 00 0 0133479999999975444447666665 69999999996 4666766543 69
Q ss_pred cceEecccCcccccchhhhccCCCcCeEeecCCCCCc
Q 019416 255 LTSLLISECENLMSLPHQIHKATSLQDLSVSGCPSLM 291 (341)
Q Consensus 255 L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~ 291 (341)
|++|+++++ .++.+|. +..+++|+.|+++++ .+.
T Consensus 274 L~~L~Ls~N-~l~~~~~-~~~l~~L~~L~L~~N-~l~ 307 (310)
T 4glp_A 274 LRVLDLSSN-RLNRAPQ-PDELPEVDNLTLDGN-PFL 307 (310)
T ss_dssp CSCEECCSC-CCCSCCC-TTSCCCCSCEECSST-TTS
T ss_pred CCEEECCCC-cCCCCch-hhhCCCccEEECcCC-CCC
Confidence 999999996 5888764 678899999999874 443
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.36 E-value=3.5e-13 Score=124.07 Aligned_cols=231 Identities=16% Similarity=0.144 Sum_probs=137.0
Q ss_pred cCCCCCCCcCeEEcCCCCCCcc----ccccccCCCCccEEeccCC--CCchh-----h------hcccCCCCcceEeeec
Q 019416 34 LGIRTGETLESLEIDNLSSLAS----FLRSELAATTVKQLKINKC--PDLEV-----L------LHRMAYTSLEYLEFSS 96 (341)
Q Consensus 34 ~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~--~~l~~-----~------~~~~~l~~L~~L~l~~ 96 (341)
..+..+++|++|++++|..... ++..+..+++|++|++++| +.+.. + +.. +++|++|++++
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~--~~~L~~L~Ls~ 103 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLK--CPKLHTVRLSD 103 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTT--CTTCCEEECCS
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhh--CCcccEEECCC
Confidence 3455688999999998743322 2233567899999999986 23321 1 467 89999999998
Q ss_pred CCCCcc-----ccC-CCCCCCccEEEEeCCCChHHHHHHhhhhcc-----------cccceEeecCCCCcc--ccCC---
Q 019416 97 CLFFSN-----SKQ-DYFPTTLKRLKICDCTNAELILKVLMDQKG-----------LALESLEVDGCSSLF--SLPI--- 154 (341)
Q Consensus 97 ~~~l~~-----~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-----------~~L~~L~l~~~~~l~--~l~~--- 154 (341)
| .+.. ++. ...+++|++|++++|.........++..+. ++|++|++++| .++ .++.
T Consensus 104 n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~ 181 (386)
T 2ca6_A 104 N-AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMKEWAK 181 (386)
T ss_dssp C-CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-CCTGGGHHHHHH
T ss_pred C-cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC-CCCcHHHHHHHH
Confidence 6 4433 221 234789999999998753221111222211 48888888875 343 2221
Q ss_pred C-CCccccceEEeeccCCccccCcceeeeCCCCCCcCCCcccccccccccccccceEeeccCcCC----CcccccCCCCC
Q 019416 155 N-QLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVGPEGESSLENMTSSHTLELRELEIWDCLEL----EFLPEDMHNFT 229 (341)
Q Consensus 155 ~-~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l----~~l~~~~~~l~ 229 (341)
. ...++|++|+++++. +........+ + .+ +. .+++|+.|+++++... ..+|..+..++
T Consensus 182 ~l~~~~~L~~L~L~~n~-l~~~g~~~l~--------~---~~---l~--~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~ 244 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNG-IRPEGIEHLL--------L---EG---LA--YCQELKVLDLQDNTFTHLGSSALAIALKSWP 244 (386)
T ss_dssp HHHHCTTCCEEECCSSC-CCHHHHHHHH--------H---TT---GG--GCTTCCEEECCSSCCHHHHHHHHHHHGGGCT
T ss_pred HHHhCCCcCEEECcCCC-CCHhHHHHHH--------H---HH---hh--cCCCccEEECcCCCCCcHHHHHHHHHHccCC
Confidence 1 234678888887752 2200000000 0 00 11 3446888888876531 44566677778
Q ss_pred CcCeEEeecCCCCce-----ecCCC--CCCCCcceEecccCccccc-----chhhh-ccCCCcCeEeecCC
Q 019416 230 DLNLLSISNCPSLES-----FPEGG--LPNTSLTSLLISECENLMS-----LPHQI-HKATSLQDLSVSGC 287 (341)
Q Consensus 230 ~L~~L~l~~c~~l~~-----~~~~~--~~~~~L~~L~l~~~~~l~~-----l~~~l-~~l~~L~~L~l~~c 287 (341)
+|+.|++++|. +.. ++... ..+++|++|++++|. ++. +|..+ ..+++|++|++++|
T Consensus 245 ~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 245 NLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGN 313 (386)
T ss_dssp TCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred CcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence 88888888764 322 12211 113578888888763 554 66666 55788888888775
No 90
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.32 E-value=2.1e-11 Score=117.36 Aligned_cols=110 Identities=27% Similarity=0.391 Sum_probs=58.0
Q ss_pred CcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhhhcccCCCCcceEeeecCCCCccccCCCCCCCccEEEEeCC
Q 019416 41 TLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVLLHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLKRLKICDC 120 (341)
Q Consensus 41 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~ 120 (341)
+|++|+++++ .++.+|..+ +++|++|++++| .+..+-+. +++|++|++++| .+..+|. +..+|++|++++|
T Consensus 60 ~L~~L~Ls~n-~L~~lp~~l--~~~L~~L~Ls~N-~l~~ip~~--l~~L~~L~Ls~N-~l~~ip~--l~~~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRL-NLSSLPDNL--PPQITVLEITQN-ALISLPEL--PASLEYLDACDN-RLSTLPE--LPASLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSS-CCSCCCSCC--CTTCSEEECCSS-CCSCCCCC--CTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSS
T ss_pred CccEEEeCCC-CCCccCHhH--cCCCCEEECcCC-CCcccccc--cCCCCEEEccCC-CCCCcch--hhcCCCEEECCCC
Confidence 6777777765 445565544 266777777763 34333334 566666666664 4444554 3336666666665
Q ss_pred CChHHHHHHhhhhcccccceEeecCCCCccccCCCCCccccceEEeec
Q 019416 121 TNAELILKVLMDQKGLALESLEVDGCSSLFSLPINQLPATLRHLRIVN 168 (341)
Q Consensus 121 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~ 168 (341)
. +.. +|... ++|+.|++++ +.++.+|. .+++|+.|++++
T Consensus 131 ~-l~~----lp~~l-~~L~~L~Ls~-N~l~~lp~--~l~~L~~L~Ls~ 169 (571)
T 3cvr_A 131 Q-LTM----LPELP-ALLEYINADN-NQLTMLPE--LPTSLEVLSVRN 169 (571)
T ss_dssp C-CSC----CCCCC-TTCCEEECCS-SCCSCCCC--CCTTCCEEECCS
T ss_pred c-CCC----CCCcC-ccccEEeCCC-CccCcCCC--cCCCcCEEECCC
Confidence 4 333 44311 5555555554 23444443 334455555444
No 91
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.32 E-value=6.8e-11 Score=103.40 Aligned_cols=191 Identities=20% Similarity=0.205 Sum_probs=110.8
Q ss_pred cceEeeecCCCCccccCCCCCCCccEEEEeCCCChHHHHHHhhhhcc-cccceEeecCCCCccccCCCCCccccceEEee
Q 019416 89 LEYLEFSSCLFFSNSKQDYFPTTLKRLKICDCTNAELILKVLMDQKG-LALESLEVDGCSSLFSLPINQLPATLRHLRIV 167 (341)
Q Consensus 89 L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~ 167 (341)
+..+++.+. .+........+++|+.|.+.++. +.. ++.... ++|++|+++++ .++.++....+++|++|+++
T Consensus 21 l~~l~l~~~-~~~~~~~~~~l~~L~~L~l~~~~-i~~----~~~l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~ 93 (272)
T 3rfs_A 21 TIKANLKKK-SVTDAVTQNELNSIDQIIANNSD-IKS----VQGIQYLPNVRYLALGGN-KLHDISALKELTNLTYLILT 93 (272)
T ss_dssp HHHHHHTCS-CTTSEECHHHHTTCCEEECTTSC-CCC----CTTGGGCTTCCEEECTTS-CCCCCGGGTTCTTCCEEECT
T ss_pred HHHHHhcCc-ccccccccccccceeeeeeCCCC-ccc----ccccccCCCCcEEECCCC-CCCCchhhcCCCCCCEEECC
Confidence 334444432 33333333346778888888775 333 332222 78888888774 45555544556777777777
Q ss_pred ccCCccccCcceeeeCCCCCCcCCCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecC
Q 019416 168 NCMNLKSLGESSKIRNCDSVVGPEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPE 247 (341)
Q Consensus 168 ~~~~l~~~~~~l~l~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~ 247 (341)
++ .++.++.. . + ..+++|+.|+++++.-....+..+..+++|++|++++| .+..++.
T Consensus 94 ~n-~l~~~~~~--------------~-----~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~ 150 (272)
T 3rfs_A 94 GN-QLQSLPNG--------------V-----F--DKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPK 150 (272)
T ss_dssp TS-CCCCCCTT--------------T-----T--TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred CC-ccCccChh--------------H-----h--cCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCH
Confidence 65 23332210 0 1 13345778888775432223344667778888888776 4555554
Q ss_pred CC-CCCCCcceEecccCcccccchh-hhccCCCcCeEeecCCCCCccCCCC--CCCCCccEEEeecCC
Q 019416 248 GG-LPNTSLTSLLISECENLMSLPH-QIHKATSLQDLSVSGCPSLMSFPHG--GLPPNLISLGIIDCE 311 (341)
Q Consensus 248 ~~-~~~~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~c~ 311 (341)
.. ..+++|++|+++++ .++.++. .+..+++|+.|++++| .+..++.. ...++|++|++.+++
T Consensus 151 ~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 151 GVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred HHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCC-cCCccCHHHHhCCcCCCEEEccCCC
Confidence 33 23467888888775 4666654 3567777888888764 45555543 235677777777654
No 92
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.30 E-value=8.9e-12 Score=110.22 Aligned_cols=122 Identities=15% Similarity=0.084 Sum_probs=75.1
Q ss_pred CCCCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh--hcccCCCCcceEeeecCCCCccccCCCCCCCcc
Q 019416 36 IRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL--LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLK 113 (341)
Q Consensus 36 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~ 113 (341)
+..+++|++|++++| .++.++. +..+++|++|++++| .+..+ +.. +++|++|++++| .+..++....+++|+
T Consensus 42 ~~~l~~L~~L~l~~~-~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~~l~~--l~~L~~L~l~~n-~l~~~~~l~~l~~L~ 115 (291)
T 1h6t_A 42 QNELNSIDQIIANNS-DIKSVQG-IQYLPNVTKLFLNGN-KLTDIKPLAN--LKNLGWLFLDEN-KVKDLSSLKDLKKLK 115 (291)
T ss_dssp HHHHHTCCEEECTTS-CCCCCTT-GGGCTTCCEEECCSS-CCCCCGGGTT--CTTCCEEECCSS-CCCCGGGGTTCTTCC
T ss_pred hhhcCcccEEEccCC-CcccChh-HhcCCCCCEEEccCC-ccCCCccccc--CCCCCEEECCCC-cCCCChhhccCCCCC
Confidence 445788888888875 4455543 666788888888874 45444 677 888888888775 566666666677788
Q ss_pred EEEEeCCCChHHHHHHhhhhcc-cccceEeecCCCCccccCCCCCccccceEEeecc
Q 019416 114 RLKICDCTNAELILKVLMDQKG-LALESLEVDGCSSLFSLPINQLPATLRHLRIVNC 169 (341)
Q Consensus 114 ~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~ 169 (341)
+|++++|. +.. ++.... ++|+.|+++++ .++.++....+++|+.|+++++
T Consensus 116 ~L~L~~n~-i~~----~~~l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~N 166 (291)
T 1h6t_A 116 SLSLEHNG-ISD----INGLVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLEDN 166 (291)
T ss_dssp EEECTTSC-CCC----CGGGGGCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSS
T ss_pred EEECCCCc-CCC----ChhhcCCCCCCEEEccCC-cCCcchhhccCCCCCEEEccCC
Confidence 88887775 333 322111 66666666653 4444432233445555555443
No 93
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.29 E-value=1e-10 Score=113.96 Aligned_cols=257 Identities=18% Similarity=0.155 Sum_probs=145.4
Q ss_pred CCCCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh-hcccCCCCcceEeeecCCCCccccCCCCCCCccE
Q 019416 36 IRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL-LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLKR 114 (341)
Q Consensus 36 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~ 114 (341)
+..+.+++.+.+.++.. ..++. +....+|+.|++.++ .+..+ ... +..|+.+++.++ .....+....+++|+.
T Consensus 302 ~~~~~~l~~l~~~~~~~-~~~~~-~~~~~~L~~L~l~~~-~~~~~~~~~--l~~L~~l~l~~n-~~~~~~~~~~l~~L~~ 375 (635)
T 4g8a_A 302 FNCLTNVSSFSLVSVTI-ERVKD-FSYNFGWQHLELVNC-KFGQFPTLK--LKSLKRLTFTSN-KGGNAFSEVDLPSLEF 375 (635)
T ss_dssp TGGGTTCSEEEEESCEE-EECGG-GGSCCCCSEEEEESC-EESSCCCCB--CTTCCEEEEESC-CSCCBCCCCBCTTCCE
T ss_pred hhhhccccccccccccc-ccccc-cccchhhhhhhcccc-cccCcCccc--chhhhhcccccc-cCCCCccccccccccc
Confidence 34456677777765432 22222 344567777777774 34333 445 677777777764 3333333334677888
Q ss_pred EEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCCC-CCccccceEEeeccCCccccCc----------ceee
Q 019416 115 LKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPIN-QLPATLRHLRIVNCMNLKSLGE----------SSKI 181 (341)
Q Consensus 115 L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~~~~l~~~~~----------~l~l 181 (341)
|+++++...... ..+.... .+|+.+++..+. ....+.. ..+++|+.+++.++......+. .+++
T Consensus 376 L~ls~n~l~~~~--~~~~~~~~~~~L~~L~~~~~~-~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l 452 (635)
T 4g8a_A 376 LDLSRNGLSFKG--CCSQSDFGTISLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 452 (635)
T ss_dssp EECCSSCCBEEE--ECCHHHHSCSCCCEEECCSCS-EEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEEC
T ss_pred chhhcccccccc--ccccchhhhhhhhhhhccccc-cccccccccccccccchhhhhccccccccccccccccccccccc
Confidence 888776532100 0111111 677777776643 2222222 4456777777665432221111 1111
Q ss_pred eCCCCCCcCCCcccccccccccccccceEeeccCcCCCc-ccccCCCCCCcCeEEeecCCCCceecCCC-CCCCCcceEe
Q 019416 182 RNCDSVVGPEGESSLENMTSSHTLELRELEIWDCLELEF-LPEDMHNFTDLNLLSISNCPSLESFPEGG-LPNTSLTSLL 259 (341)
Q Consensus 182 ~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~-l~~~~~~l~~L~~L~l~~c~~l~~~~~~~-~~~~~L~~L~ 259 (341)
+.+.......+. + ..++.++.|+++++..... .|..+..+++|+.|++++| .++.+++.. ..+++|++|+
T Consensus 453 s~n~l~~~~~~~-----~--~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~ 524 (635)
T 4g8a_A 453 SHTHTRVAFNGI-----F--NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLN 524 (635)
T ss_dssp TTSCCEECCTTT-----T--TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEE
T ss_pred cccccccccccc-----c--ccchhhhhhhhhhcccccccCchhhhhccccCEEECCCC-ccCCcChHHHcCCCCCCEEE
Confidence 111100000000 0 1344688888888764443 5677888888999999886 466665433 3457888999
Q ss_pred cccCcccccch-hhhccCCCcCeEeecCCCCCccCCCCC---CCCCccEEEeecCC
Q 019416 260 ISECENLMSLP-HQIHKATSLQDLSVSGCPSLMSFPHGG---LPPNLISLGIIDCE 311 (341)
Q Consensus 260 l~~~~~l~~l~-~~l~~l~~L~~L~l~~c~~l~~~~~~~---~~~~L~~L~l~~c~ 311 (341)
++++ +++.++ ..+..+++|+.|+++++ .+..++... .+++|++|++++++
T Consensus 525 Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 525 MSHN-NFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp CTTS-CCCBCCCGGGTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred CCCC-cCCCCChhHHhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 9885 577765 35788888999999874 566665442 34688899887744
No 94
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.29 E-value=5.6e-13 Score=122.67 Aligned_cols=233 Identities=17% Similarity=0.151 Sum_probs=135.0
Q ss_pred CccccccccCCCCccEEeccCCCCchhh--------hcccCCCCcceEeeecCCCCcc----ccC--------CCCCCCc
Q 019416 53 LASFLRSELAATTVKQLKINKCPDLEVL--------LHRMAYTSLEYLEFSSCLFFSN----SKQ--------DYFPTTL 112 (341)
Q Consensus 53 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~--------~~~~~l~~L~~L~l~~~~~l~~----~~~--------~~~~~~L 112 (341)
...++..+..+++|++|++++| .+... +.. +++|++|++++| .+.. +|. ...+++|
T Consensus 21 ~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~--~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~~~l~~~~~L 96 (386)
T 2ca6_A 21 EKSVFAVLLEDDSVKEIVLSGN-TIGTEAARWLSENIAS--KKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKL 96 (386)
T ss_dssp HHTTSHHHHHCSCCCEEECTTS-EECHHHHHHHHHTTTT--CTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHhcCCCccEEECCCC-CCCHHHHHHHHHHHHh--CCCccEEeCccc-ccCccccchhHHHHHHHHHHhhCCcc
Confidence 3344444566799999999995 44332 667 899999999886 2222 221 1346899
Q ss_pred cEEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCCC------CCc---------cccceEEeeccCCcc--
Q 019416 113 KRLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPIN------QLP---------ATLRHLRIVNCMNLK-- 173 (341)
Q Consensus 113 ~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~------~~~---------~~L~~L~l~~~~~l~-- 173 (341)
++|++++|.....-...++..+. ++|++|++++| .++..... ..+ ++|++|+++++. +.
T Consensus 97 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~-l~~~ 174 (386)
T 2ca6_A 97 HTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENG 174 (386)
T ss_dssp CEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGG
T ss_pred cEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCC-CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-CCcH
Confidence 99999998744410001444444 88999999885 34322111 111 578888887653 21
Q ss_pred ccCcceeeeCCCCCCcCCCcccccccccccccccceEeeccCcCCC------cccccCCCCCCcCeEEeecCCCC-----
Q 019416 174 SLGESSKIRNCDSVVGPEGESSLENMTSSHTLELRELEIWDCLELE------FLPEDMHNFTDLNLLSISNCPSL----- 242 (341)
Q Consensus 174 ~~~~~l~l~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~------~l~~~~~~l~~L~~L~l~~c~~l----- 242 (341)
.++.. ..+ + ..+++|++|++++|. +. .++..+..+++|+.|++++|. +
T Consensus 175 ~~~~l--------------~~~---l--~~~~~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~ 233 (386)
T 2ca6_A 175 SMKEW--------------AKT---F--QSHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGS 233 (386)
T ss_dssp GHHHH--------------HHH---H--HHCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHH
T ss_pred HHHHH--------------HHH---H--HhCCCcCEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHH
Confidence 11100 000 1 023358888888763 33 123366677788888887764 3
Q ss_pred ceecCCCCCCCCcceEecccCccccc-----chhhhcc--CCCcCeEeecCCCCCcc-----CCCC--CCCCCccEEEee
Q 019416 243 ESFPEGGLPNTSLTSLLISECENLMS-----LPHQIHK--ATSLQDLSVSGCPSLMS-----FPHG--GLPPNLISLGII 308 (341)
Q Consensus 243 ~~~~~~~~~~~~L~~L~l~~~~~l~~-----l~~~l~~--l~~L~~L~l~~c~~l~~-----~~~~--~~~~~L~~L~l~ 308 (341)
..++.....+++|++|++++|. ++. ++..+.. +++|+.|++++| .+.. ++.. ...++|++|++.
T Consensus 234 ~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~ 311 (386)
T 2ca6_A 234 SALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELN 311 (386)
T ss_dssp HHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECT
T ss_pred HHHHHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEcc
Confidence 3333322234578888887764 543 3445533 777888888775 3444 4332 124677778777
Q ss_pred cCCCCC
Q 019416 309 DCENLI 314 (341)
Q Consensus 309 ~c~~~~ 314 (341)
+|..-.
T Consensus 312 ~N~l~~ 317 (386)
T 2ca6_A 312 GNRFSE 317 (386)
T ss_dssp TSBSCT
T ss_pred CCcCCc
Confidence 765443
No 95
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.27 E-value=3e-11 Score=100.39 Aligned_cols=122 Identities=18% Similarity=0.121 Sum_probs=65.2
Q ss_pred ccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCce-ecCCCCCCCCcceEecccCccccc-chhhhccCCCcCeEe
Q 019416 206 ELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLES-FPEGGLPNTSLTSLLISECENLMS-LPHQIHKATSLQDLS 283 (341)
Q Consensus 206 ~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~-~~~~~~~~~~L~~L~l~~~~~l~~-l~~~l~~l~~L~~L~ 283 (341)
+|+.|++++| .+..+ ..+..+++|++|++++|. +.. .+.....+++|++|+++++. ++. .+..+..+++|++|+
T Consensus 67 ~L~~L~l~~n-~~~~~-~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~Ls~n~-i~~~~~~~l~~l~~L~~L~ 142 (197)
T 4ezg_A 67 NIKDLTINNI-HATNY-NPISGLSNLERLRIMGKD-VTSDKIPNLSGLTSLTLLDISHSA-HDDSILTKINTLPKVNSID 142 (197)
T ss_dssp TCSEEEEESC-CCSCC-GGGTTCTTCCEEEEECTT-CBGGGSCCCTTCTTCCEEECCSSB-CBGGGHHHHTTCSSCCEEE
T ss_pred CCCEEEccCC-CCCcc-hhhhcCCCCCEEEeECCc-cCcccChhhcCCCCCCEEEecCCc-cCcHhHHHHhhCCCCCEEE
Confidence 4555555554 33333 244555666666666643 222 22222234566666666643 432 445566666667776
Q ss_pred ecCCCCCccCCCCCCCCCccEEEeecCCCCCccccccccCCCceeEEEEeC
Q 019416 284 VSGCPSLMSFPHGGLPPNLISLGIIDCENLIPLSQWELHKLKHLNKYTILG 334 (341)
Q Consensus 284 l~~c~~l~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~i~~~~~L~~l~l~~ 334 (341)
+++|..+.+++.-...++|++|++++|.. ...+ .+..+++|++|++++
T Consensus 143 L~~n~~i~~~~~l~~l~~L~~L~l~~n~i-~~~~--~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 143 LSYNGAITDIMPLKTLPELKSLNIQFDGV-HDYR--GIEDFPKLNQLYAFS 190 (197)
T ss_dssp CCSCTBCCCCGGGGGCSSCCEEECTTBCC-CCCT--TGGGCSSCCEEEECB
T ss_pred ccCCCCccccHhhcCCCCCCEEECCCCCC-cChH--HhccCCCCCEEEeeC
Confidence 66654455554323356666777666532 2222 246667777777766
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.27 E-value=6.4e-11 Score=113.93 Aligned_cols=178 Identities=26% Similarity=0.278 Sum_probs=126.1
Q ss_pred CCcceEeeecCCCCccccCCCCCCCccEEEEeCCCChHHHHHHhhhhcccccceEeecCCCCccccCCCCCccccceEEe
Q 019416 87 TSLEYLEFSSCLFFSNSKQDYFPTTLKRLKICDCTNAELILKVLMDQKGLALESLEVDGCSSLFSLPINQLPATLRHLRI 166 (341)
Q Consensus 87 ~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l 166 (341)
.+|+.|+++++ .+..+|.. .+++|++|++++|. +.. +| ...++|++|+++++ .++.+|. +..+|+.|++
T Consensus 59 ~~L~~L~Ls~n-~L~~lp~~-l~~~L~~L~Ls~N~-l~~----ip-~~l~~L~~L~Ls~N-~l~~ip~--l~~~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRL-NLSSLPDN-LPPQITVLEITQNA-LIS----LP-ELPASLEYLDACDN-RLSTLPE--LPASLKHLDV 127 (571)
T ss_dssp TTCSEEECCSS-CCSCCCSC-CCTTCSEEECCSSC-CSC----CC-CCCTTCCEEECCSS-CCSCCCC--CCTTCCEEEC
T ss_pred CCccEEEeCCC-CCCccCHh-HcCCCCEEECcCCC-Ccc----cc-cccCCCCEEEccCC-CCCCcch--hhcCCCEEEC
Confidence 38999999885 67777753 35889999999986 445 77 22289999999884 7777776 4458899998
Q ss_pred eccCCccccCcceeeeCCCCCCcCCCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceec
Q 019416 167 VNCMNLKSLGESSKIRNCDSVVGPEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFP 246 (341)
Q Consensus 167 ~~~~~l~~~~~~l~l~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~ 246 (341)
+++ .++.+|. .+++|+.|+++++ .++.+|. .+++|+.|++++|. ++.+|
T Consensus 128 s~N-~l~~lp~-------------------------~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N~-L~~lp 176 (571)
T 3cvr_A 128 DNN-QLTMLPE-------------------------LPALLEYINADNN-QLTMLPE---LPTSLEVLSVRNNQ-LTFLP 176 (571)
T ss_dssp CSS-CCSCCCC-------------------------CCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC-CSCCC
T ss_pred CCC-cCCCCCC-------------------------cCccccEEeCCCC-ccCcCCC---cCCCcCEEECCCCC-CCCcc
Confidence 875 3443332 2335889999885 4556665 46788999998864 56566
Q ss_pred CCCCCCCCcceEecccCcccccchhhhccCCCc-------CeEeecCCCCCccCCCC-CCCCCccEEEeecCCCCC
Q 019416 247 EGGLPNTSLTSLLISECENLMSLPHQIHKATSL-------QDLSVSGCPSLMSFPHG-GLPPNLISLGIIDCENLI 314 (341)
Q Consensus 247 ~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L-------~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~c~~~~ 314 (341)
. +. ++|++|+++++ .++.+|. +.. +| +.|++++ +.++.+|.. ...++|+.|++++++...
T Consensus 177 ~--l~-~~L~~L~Ls~N-~L~~lp~-~~~--~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 177 E--LP-ESLEALDVSTN-LLESLPA-VPV--RNHHSEETEIFFRCRE-NRITHIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp C--CC-TTCCEEECCSS-CCSSCCC-CC----------CCEEEECCS-SCCCCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred h--hh-CCCCEEECcCC-CCCchhh-HHH--hhhcccccceEEecCC-CcceecCHHHhcCCCCCEEEeeCCcCCC
Confidence 6 33 68999999885 5888876 433 66 8888887 467777764 337788888888876544
No 97
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.24 E-value=3.6e-10 Score=97.50 Aligned_cols=169 Identities=24% Similarity=0.263 Sum_probs=92.7
Q ss_pred CccEEEEeCCCChHHHHHHhhhhcccccceEeecCCCCccccCCC--CCccccceEEeeccCCccccCcceeeeCCCCCC
Q 019416 111 TLKRLKICDCTNAELILKVLMDQKGLALESLEVDGCSSLFSLPIN--QLPATLRHLRIVNCMNLKSLGESSKIRNCDSVV 188 (341)
Q Consensus 111 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~ 188 (341)
+.++++.+++. +.. +|..+.++++.|++++ +.++.++.. ..+++|+.|+++++ .++.++..
T Consensus 15 ~~~~l~~~~~~-l~~----~p~~~~~~l~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~---------- 77 (251)
T 3m19_A 15 GKKEVDCQGKS-LDS----VPSGIPADTEKLDLQS-TGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAG---------- 77 (251)
T ss_dssp GGTEEECTTCC-CSS----CCSCCCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTT----------
T ss_pred CCeEEecCCCC-ccc----cCCCCCCCCCEEEccC-CCcCccCHhHhcCcccCCEEECCCC-cCCccCHh----------
Confidence 34556665543 444 5555446677777766 344444432 34566777776664 23222110
Q ss_pred cCCCcccccccccccccccceEeeccCcCCCcc-cccCCCCCCcCeEEeecCCCCceecCCC-CCCCCcceEecccCccc
Q 019416 189 GPEGESSLENMTSSHTLELRELEIWDCLELEFL-PEDMHNFTDLNLLSISNCPSLESFPEGG-LPNTSLTSLLISECENL 266 (341)
Q Consensus 189 ~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~~~~~~-~~~~~L~~L~l~~~~~l 266 (341)
. + ..+++|+.|+++++. +..+ +..+..+++|++|+++++ .++.++... ..+++|++|+++++ .+
T Consensus 78 ------~---~--~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l 143 (251)
T 3m19_A 78 ------V---F--DDLTELGTLGLANNQ-LASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTN-QL 143 (251)
T ss_dssp ------T---T--TTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CC
T ss_pred ------H---h--ccCCcCCEEECCCCc-ccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCC-cC
Confidence 0 1 123357777777643 3333 345566677777777764 455555433 22457777777764 46
Q ss_pred ccchh-hhccCCCcCeEeecCCCCCccCCCCC--CCCCccEEEeecCC
Q 019416 267 MSLPH-QIHKATSLQDLSVSGCPSLMSFPHGG--LPPNLISLGIIDCE 311 (341)
Q Consensus 267 ~~l~~-~l~~l~~L~~L~l~~c~~l~~~~~~~--~~~~L~~L~l~~c~ 311 (341)
+.++. .+..+++|++|+++++ .+..++... ..++|++|++.+++
T Consensus 144 ~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 144 QSIPAGAFDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CccCHHHcCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCc
Confidence 66654 4666677777777663 455555432 24667777776654
No 98
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.22 E-value=2e-10 Score=95.41 Aligned_cols=146 Identities=15% Similarity=0.097 Sum_probs=102.4
Q ss_pred cccceEeecCCCCccccCCCCCc---cccceEEeeccCCccccCcceeeeCCCCCCcCCCcccccccccccccccceEee
Q 019416 136 LALESLEVDGCSSLFSLPINQLP---ATLRHLRIVNCMNLKSLGESSKIRNCDSVVGPEGESSLENMTSSHTLELRELEI 212 (341)
Q Consensus 136 ~~L~~L~l~~~~~l~~l~~~~~~---~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~l 212 (341)
++|+.|+++++ .++.++ .. ++|++|+++++ .+..++. +. .+++|+.|++
T Consensus 44 ~~L~~L~l~~n-~i~~l~---~l~~l~~L~~L~l~~n-~~~~~~~---------------------l~--~l~~L~~L~l 95 (197)
T 4ezg_A 44 NSLTYITLANI-NVTDLT---GIEYAHNIKDLTINNI-HATNYNP---------------------IS--GLSNLERLRI 95 (197)
T ss_dssp HTCCEEEEESS-CCSCCT---TGGGCTTCSEEEEESC-CCSCCGG---------------------GT--TCTTCCEEEE
T ss_pred CCccEEeccCC-CccChH---HHhcCCCCCEEEccCC-CCCcchh---------------------hh--cCCCCCEEEe
Confidence 78888888773 555443 35 45666666665 3332211 21 4557999999
Q ss_pred ccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccchhhhccCCCcCeEeecCCCCCcc
Q 019416 213 WDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQIHKATSLQDLSVSGCPSLMS 292 (341)
Q Consensus 213 ~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~ 292 (341)
+++.-....+..+..+++|+.|++++|.-....+.....+++|++|++++|..++.++ .+..+++|+.|++++| .+..
T Consensus 96 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~ 173 (197)
T 4ezg_A 96 MGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHD 173 (197)
T ss_dssp ECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCC
T ss_pred ECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcC
Confidence 9975444467888999999999999975322233322335699999999976588887 7889999999999885 5777
Q ss_pred CCCCCCCCCccEEEeecCC
Q 019416 293 FPHGGLPPNLISLGIIDCE 311 (341)
Q Consensus 293 ~~~~~~~~~L~~L~l~~c~ 311 (341)
++.-...++|++|++.+++
T Consensus 174 ~~~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 174 YRGIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CTTGGGCSSCCEEEECBC-
T ss_pred hHHhccCCCCCEEEeeCcc
Confidence 7643456899999998864
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.21 E-value=5.2e-11 Score=105.26 Aligned_cols=99 Identities=15% Similarity=0.097 Sum_probs=62.0
Q ss_pred cCCCCccEEeccCCCCchhh--hcccCCCCcceEeeecCCCCccccCCCCCCCccEEEEeCCCChHHHHHHhhhhcc-cc
Q 019416 61 LAATTVKQLKINKCPDLEVL--LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLKRLKICDCTNAELILKVLMDQKG-LA 137 (341)
Q Consensus 61 ~~l~~L~~L~l~~~~~l~~~--~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~ 137 (341)
..+++|+.|++++| .+..+ +.. +++|++|++++| .+..++....+++|++|++++|. +.. ++.... ++
T Consensus 43 ~~l~~L~~L~l~~~-~i~~~~~~~~--l~~L~~L~L~~n-~l~~~~~l~~l~~L~~L~l~~n~-l~~----~~~l~~l~~ 113 (291)
T 1h6t_A 43 NELNSIDQIIANNS-DIKSVQGIQY--LPNVTKLFLNGN-KLTDIKPLANLKNLGWLFLDENK-VKD----LSSLKDLKK 113 (291)
T ss_dssp HHHHTCCEEECTTS-CCCCCTTGGG--CTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCC----GGGGTTCTT
T ss_pred hhcCcccEEEccCC-CcccChhHhc--CCCCCEEEccCC-ccCCCcccccCCCCCEEECCCCc-CCC----ChhhccCCC
Confidence 35678888888874 45444 777 888888888775 55555555567788888888775 333 433222 67
Q ss_pred cceEeecCCCCccccCCCCCccccceEEeecc
Q 019416 138 LESLEVDGCSSLFSLPINQLPATLRHLRIVNC 169 (341)
Q Consensus 138 L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~ 169 (341)
|++|+++++ .++.++....+++|+.|+++++
T Consensus 114 L~~L~L~~n-~i~~~~~l~~l~~L~~L~l~~n 144 (291)
T 1h6t_A 114 LKSLSLEHN-GISDINGLVHLPQLESLYLGNN 144 (291)
T ss_dssp CCEEECTTS-CCCCCGGGGGCTTCCEEECCSS
T ss_pred CCEEECCCC-cCCCChhhcCCCCCCEEEccCC
Confidence 777777663 4544443344456666666554
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.18 E-value=6.4e-11 Score=114.99 Aligned_cols=167 Identities=14% Similarity=0.110 Sum_probs=113.4
Q ss_pred CCCCCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh--hcccCCCCcceEeeecCCCCccccCCCCCCCc
Q 019416 35 GIRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL--LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTL 112 (341)
Q Consensus 35 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L 112 (341)
.+..+++|+.|+++++ .++.++ .+..+++|+.|++++| .+..+ +.. +++|+.|++++| .+..++....+++|
T Consensus 38 ~~~~L~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~Ls~N-~l~~~~~l~~--l~~L~~L~Ls~N-~l~~l~~l~~l~~L 111 (605)
T 1m9s_A 38 TQNELNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKPLTN--LKNLGWLFLDEN-KIKDLSSLKDLKKL 111 (605)
T ss_dssp CHHHHTTCCCCBCTTC-CCCCCT-TGGGCTTCCEEECTTS-CCCCCGGGGG--CTTCCEEECCSS-CCCCCTTSTTCTTC
T ss_pred chhcCCCCCEEECcCC-CCCCCh-HHccCCCCCEEEeeCC-CCCCChhhcc--CCCCCEEECcCC-CCCCChhhccCCCC
Confidence 3456888999999976 455555 3777899999999985 55555 778 999999999886 67777766778899
Q ss_pred cEEEEeCCCChHHHHHHhhhhcc-cccceEeecCCCCccccCCCCCccccceEEeeccCCccccCcceeeeCCCCCCcCC
Q 019416 113 KRLKICDCTNAELILKVLMDQKG-LALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVGPE 191 (341)
Q Consensus 113 ~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~~~ 191 (341)
+.|++++|. +.. ++.... ++|+.|++++| .+..++....+++|+.|+++++. +..++.
T Consensus 112 ~~L~Ls~N~-l~~----l~~l~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N~-l~~~~~-------------- 170 (605)
T 1m9s_A 112 KSLSLEHNG-ISD----INGLVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLEDNQ-ISDIVP-------------- 170 (605)
T ss_dssp CEEECTTSC-CCC----CGGGGGCTTCSEEECCSS-CCCCCGGGGSCTTCSEEECCSSC-CCCCGG--------------
T ss_pred CEEEecCCC-CCC----CccccCCCccCEEECCCC-ccCCchhhcccCCCCEEECcCCc-CCCchh--------------
Confidence 999999886 333 433222 88888888774 55555444556777777777653 332211
Q ss_pred CcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecC
Q 019416 192 GESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNC 239 (341)
Q Consensus 192 ~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c 239 (341)
...+++|+.|++++| .+..++ .+..+++|+.|++++|
T Consensus 171 ---------l~~l~~L~~L~Ls~N-~i~~l~-~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 171 ---------LAGLTKLQNLYLSKN-HISDLR-ALAGLKNLDVLELFSQ 207 (605)
T ss_dssp ---------GTTCTTCCEEECCSS-CCCBCG-GGTTCTTCSEEECCSE
T ss_pred ---------hccCCCCCEEECcCC-CCCCCh-HHccCCCCCEEEccCC
Confidence 113335777777775 344443 4666777777777765
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.16 E-value=5.9e-11 Score=115.20 Aligned_cols=98 Identities=15% Similarity=0.102 Sum_probs=50.8
Q ss_pred cCCCCccEEeccCCCCchhh--hcccCCCCcceEeeecCCCCccccCCCCCCCccEEEEeCCCChHHHHHHhhhhcc-cc
Q 019416 61 LAATTVKQLKINKCPDLEVL--LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLKRLKICDCTNAELILKVLMDQKG-LA 137 (341)
Q Consensus 61 ~~l~~L~~L~l~~~~~l~~~--~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~ 137 (341)
..+++|+.|++++| .+..+ +.. +++|+.|++++| .+..++....+++|+.|++++|. +.. ++.... ++
T Consensus 40 ~~L~~L~~L~l~~n-~i~~l~~l~~--l~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N~-l~~----l~~l~~l~~ 110 (605)
T 1m9s_A 40 NELNSIDQIIANNS-DIKSVQGIQY--LPNVTKLFLNGN-KLTDIKPLTNLKNLGWLFLDENK-IKD----LSSLKDLKK 110 (605)
T ss_dssp HHHTTCCCCBCTTC-CCCCCTTGGG--CTTCCEEECTTS-CCCCCGGGGGCTTCCEEECCSSC-CCC----CTTSTTCTT
T ss_pred hcCCCCCEEECcCC-CCCCChHHcc--CCCCCEEEeeCC-CCCCChhhccCCCCCEEECcCCC-CCC----ChhhccCCC
Confidence 34566777777663 34444 666 677777777664 44444444446666666666654 222 321111 55
Q ss_pred cceEeecCCCCccccCCCCCccccceEEeec
Q 019416 138 LESLEVDGCSSLFSLPINQLPATLRHLRIVN 168 (341)
Q Consensus 138 L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~ 168 (341)
|+.|+++++ .+..++....+++|+.|++++
T Consensus 111 L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~ 140 (605)
T 1m9s_A 111 LKSLSLEHN-GISDINGLVHLPQLESLYLGN 140 (605)
T ss_dssp CCEEECTTS-CCCCCGGGGGCTTCSEEECCS
T ss_pred CCEEEecCC-CCCCCccccCCCccCEEECCC
Confidence 555555552 333333323344455555544
No 102
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.14 E-value=5.5e-10 Score=96.35 Aligned_cols=143 Identities=17% Similarity=0.149 Sum_probs=84.9
Q ss_pred CchhhhhhcccCCC---ccccCCCCCCCcCeEEcCCCCCCccc-cccccCCCCccEEeccCCCCchhh----hcccCCCC
Q 019416 17 VPKNFLALALFPDE---DKILGIRTGETLESLEIDNLSSLASF-LRSELAATTVKQLKINKCPDLEVL----LHRMAYTS 88 (341)
Q Consensus 17 ~~~~~~~l~~~~~~---~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~ 88 (341)
+|..+..+.+..+. .....+..+++|++|++++| .++.+ +..+..+++|++|+++++ .+..+ +.. +++
T Consensus 33 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~--l~~ 108 (251)
T 3m19_A 33 IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLANN-QLASLPLGVFDH--LTQ 108 (251)
T ss_dssp CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTT--CTT
T ss_pred CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECCCC-cccccChhHhcc--cCC
Confidence 44455555553331 11124566777777777775 34444 333566777777777773 44443 566 777
Q ss_pred cceEeeecCCCCccccCC--CCCCCccEEEEeCCCChHHHHHHhhh-hcc--cccceEeecCCCCccccCCC--CCcccc
Q 019416 89 LEYLEFSSCLFFSNSKQD--YFPTTLKRLKICDCTNAELILKVLMD-QKG--LALESLEVDGCSSLFSLPIN--QLPATL 161 (341)
Q Consensus 89 L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~--~~L~~L~l~~~~~l~~l~~~--~~~~~L 161 (341)
|++|+++++ .+..++.. ..+++|++|++++|. +.. ++. .+. ++|+.|++++ +.++.++.. ..+++|
T Consensus 109 L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~----~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L 181 (251)
T 3m19_A 109 LDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQ-LQS----IPAGAFDKLTNLQTLSLST-NQLQSVPHGAFDRLGKL 181 (251)
T ss_dssp CCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCC----CCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTC
T ss_pred CCEEEcCCC-cCCCcChhHhccCCcccEEECcCCc-CCc----cCHHHcCcCcCCCEEECCC-CcCCccCHHHHhCCCCC
Confidence 777777764 55555542 336777777777774 333 443 232 7777777776 455555543 345677
Q ss_pred ceEEeeccC
Q 019416 162 RHLRIVNCM 170 (341)
Q Consensus 162 ~~L~l~~~~ 170 (341)
+.|++++++
T Consensus 182 ~~L~l~~N~ 190 (251)
T 3m19_A 182 QTITLFGNQ 190 (251)
T ss_dssp CEEECCSCC
T ss_pred CEEEeeCCc
Confidence 777777653
No 103
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.11 E-value=2.2e-10 Score=99.67 Aligned_cols=142 Identities=17% Similarity=0.136 Sum_probs=68.9
Q ss_pred cccceEeecCCCCccccCCCCCccccceEEeeccCCccccCcceeeeCCCCCCcCCCcccccccccccccccceEeeccC
Q 019416 136 LALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVGPEGESSLENMTSSHTLELRELEIWDC 215 (341)
Q Consensus 136 ~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~ 215 (341)
++|+.|+++++ .++.++....+++|+.|+++++ .+..++. + ..+++|+.|+++++
T Consensus 41 ~~L~~L~l~~n-~i~~l~~l~~l~~L~~L~L~~N-~i~~~~~---------------------l--~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 41 SGVQNFNGDNS-NIQSLAGMQFFTNLKELHLSHN-QISDLSP---------------------L--KDLTKLEELSVNRN 95 (263)
T ss_dssp TTCSEEECTTS-CCCCCTTGGGCTTCCEEECCSS-CCCCCGG---------------------G--TTCSSCCEEECCSS
T ss_pred CcCcEEECcCC-CcccchHHhhCCCCCEEECCCC-ccCCChh---------------------h--ccCCCCCEEECCCC
Confidence 56666666553 4555543344456666666553 2332221 0 12234666666654
Q ss_pred cCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccchhhhccCCCcCeEeecCCCCCccCCC
Q 019416 216 LELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQIHKATSLQDLSVSGCPSLMSFPH 295 (341)
Q Consensus 216 ~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~ 295 (341)
.++.++.... ++|+.|++++| .++.++. ...+++|++|+++++ .++.++ .+..+++|+.|+++++ .+..++.
T Consensus 96 -~l~~l~~~~~--~~L~~L~L~~N-~l~~~~~-l~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~L~~L~L~~N-~i~~~~~ 167 (263)
T 1xeu_A 96 -RLKNLNGIPS--ACLSRLFLDNN-ELRDTDS-LIHLKNLEILSIRNN-KLKSIV-MLGFLSKLEVLDLHGN-EITNTGG 167 (263)
T ss_dssp -CCSCCTTCCC--SSCCEEECCSS-CCSBSGG-GTTCTTCCEEECTTS-CCCBCG-GGGGCTTCCEEECTTS-CCCBCTT
T ss_pred -ccCCcCcccc--CcccEEEccCC-ccCCChh-hcCcccccEEECCCC-cCCCCh-HHccCCCCCEEECCCC-cCcchHH
Confidence 3333432222 55666666654 2333322 112346666666653 355554 4555666666666553 4444422
Q ss_pred CCCCCCccEEEeecC
Q 019416 296 GGLPPNLISLGIIDC 310 (341)
Q Consensus 296 ~~~~~~L~~L~l~~c 310 (341)
-...++|+.|+++++
T Consensus 168 l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 168 LTRLKKVNWIDLTGQ 182 (263)
T ss_dssp STTCCCCCEEEEEEE
T ss_pred hccCCCCCEEeCCCC
Confidence 233455666666554
No 104
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.10 E-value=9.7e-12 Score=113.43 Aligned_cols=80 Identities=11% Similarity=-0.064 Sum_probs=41.3
Q ss_pred ccceEeeccCcCCCccc----ccCCCC-CCcCeEEeecCCCCce-----ecCCCCC-CCCcceEecccCcccccc-----
Q 019416 206 ELRELEIWDCLELEFLP----EDMHNF-TDLNLLSISNCPSLES-----FPEGGLP-NTSLTSLLISECENLMSL----- 269 (341)
Q Consensus 206 ~L~~L~l~~~~~l~~l~----~~~~~l-~~L~~L~l~~c~~l~~-----~~~~~~~-~~~L~~L~l~~~~~l~~l----- 269 (341)
+|++|++++|.-....+ ..+... ++|+.|++++|. +.. ++..... .++|++|+++++ .++..
T Consensus 168 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l 245 (362)
T 3goz_A 168 NVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENL 245 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHH
T ss_pred cccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHHH
Confidence 47777777764222222 123334 377777777753 332 1111100 136777777765 35432
Q ss_pred hhhhccCCCcCeEeecCC
Q 019416 270 PHQIHKATSLQDLSVSGC 287 (341)
Q Consensus 270 ~~~l~~l~~L~~L~l~~c 287 (341)
...+..+++|+.|++++|
T Consensus 246 ~~~~~~l~~L~~L~L~~n 263 (362)
T 3goz_A 246 KLLKDSLKHLQTVYLDYD 263 (362)
T ss_dssp HHTTTTTTTCSEEEEEHH
T ss_pred HHHHhcCCCccEEEeccC
Confidence 223455667777777665
No 105
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.09 E-value=7e-10 Score=92.79 Aligned_cols=120 Identities=23% Similarity=0.223 Sum_probs=76.0
Q ss_pred CCCcCeEEcCCCCCCcccccc-ccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccCC--CCCCC
Q 019416 39 GETLESLEIDNLSSLASFLRS-ELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQD--YFPTT 111 (341)
Q Consensus 39 ~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~ 111 (341)
.++|++|+++++ .++.++.. +..+++|++|+++++ .+..+ +.. +++|++|+++++ .+..++.. ..+++
T Consensus 27 ~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~--l~~L~~L~Ls~n-~l~~~~~~~~~~l~~ 101 (208)
T 2o6s_A 27 PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNK--LTSLTYLNLSTN-QLQSLPNGVFDKLTQ 101 (208)
T ss_dssp CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTT--CTTCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCC-ccCccChhhcCC--CCCcCEEECCCC-cCCccCHhHhcCccC
Confidence 567888888876 44555443 567888888888873 45444 566 788888888775 55555542 34677
Q ss_pred ccEEEEeCCCChHHHHHHhhhh-cc--cccceEeecCCCCccccCCC--CCccccceEEeecc
Q 019416 112 LKRLKICDCTNAELILKVLMDQ-KG--LALESLEVDGCSSLFSLPIN--QLPATLRHLRIVNC 169 (341)
Q Consensus 112 L~~L~l~~~~~~~~~~~~~~~~-~~--~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~ 169 (341)
|++|+++++. +.. ++.. +. ++|++|++++ +.++.++.. ..+++|+.|+++++
T Consensus 102 L~~L~L~~N~-l~~----~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 102 LKELALNTNQ-LQS----LPDGVFDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp CCEEECCSSC-CCC----CCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred CCEEEcCCCc-Ccc----cCHhHhccCCcCCEEECCC-CccceeCHHHhccCCCccEEEecCC
Confidence 8888887775 333 3332 22 6777777766 355555443 33456666666654
No 106
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.07 E-value=6.6e-11 Score=107.86 Aligned_cols=227 Identities=15% Similarity=0.082 Sum_probs=132.0
Q ss_pred CCCCcCeEEcCCCCCCcccc-----ccccCCC-CccEEeccCCCCchhh----hccc--CC-CCcceEeeecCCCCcccc
Q 019416 38 TGETLESLEIDNLSSLASFL-----RSELAAT-TVKQLKINKCPDLEVL----LHRM--AY-TSLEYLEFSSCLFFSNSK 104 (341)
Q Consensus 38 ~~~~L~~L~l~~~~~~~~~~-----~~~~~l~-~L~~L~l~~~~~l~~~----~~~~--~l-~~L~~L~l~~~~~l~~~~ 104 (341)
..++|++|++++|. ++..+ ..+..++ +|++|++++| .+... +..+ .. ++|++|++++| .+....
T Consensus 20 ~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~ 96 (362)
T 3goz_A 20 IPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGN-FLSYKS 96 (362)
T ss_dssp SCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSC
T ss_pred CCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCC-cCChHH
Confidence 44559999999874 55443 3355677 8999999985 55443 2220 02 88999999886 444332
Q ss_pred C------CCCC-CCccEEEEeCCCChHHHHHHhhhhcc---cccceEeecCCCCccccCCC-------CCccccceEEee
Q 019416 105 Q------DYFP-TTLKRLKICDCTNAELILKVLMDQKG---LALESLEVDGCSSLFSLPIN-------QLPATLRHLRIV 167 (341)
Q Consensus 105 ~------~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~l~~l~~~-------~~~~~L~~L~l~ 167 (341)
. ...+ ++|++|++++|.........+...+. .+|++|++++| .++..... ..+++|++|+++
T Consensus 97 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls 175 (362)
T 3goz_A 97 SDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPANVNSLNLR 175 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECT
T ss_pred HHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHhcCCccccEeeec
Confidence 2 1123 78999999998732210000111111 48999999884 55532211 122489999998
Q ss_pred ccCCccccCc-ceeeeCCCCCCcCCCcccccccccccccccceEeeccCcCCCc-----ccccCCC-CCCcCeEEeecCC
Q 019416 168 NCMNLKSLGE-SSKIRNCDSVVGPEGESSLENMTSSHTLELRELEIWDCLELEF-----LPEDMHN-FTDLNLLSISNCP 240 (341)
Q Consensus 168 ~~~~l~~~~~-~l~l~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~-----l~~~~~~-l~~L~~L~l~~c~ 240 (341)
++. +..... .+ . .++...| ++|+.|+++++. +.. ++..+.. .++|++|++++|.
T Consensus 176 ~n~-l~~~~~~~l--~-----------~~l~~~~----~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 236 (362)
T 3goz_A 176 GNN-LASKNCAEL--A-----------KFLASIP----ASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNC 236 (362)
T ss_dssp TSC-GGGSCHHHH--H-----------HHHHTSC----TTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSSC
T ss_pred CCC-CchhhHHHH--H-----------HHHHhCC----CCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCCC
Confidence 863 332211 00 0 0000011 259999998864 333 4555544 3589999999864
Q ss_pred CCceecC-----CCCCCCCcceEecccCc-------ccccchhhhccCCCcCeEeecCCC
Q 019416 241 SLESFPE-----GGLPNTSLTSLLISECE-------NLMSLPHQIHKATSLQDLSVSGCP 288 (341)
Q Consensus 241 ~l~~~~~-----~~~~~~~L~~L~l~~~~-------~l~~l~~~l~~l~~L~~L~l~~c~ 288 (341)
+...+. ....+++|++|++++|. .+..++..+..+++|+.|+++++.
T Consensus 237 -l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 237 -LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp -CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred -CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 433221 11234689999998864 122344456777888999998753
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.07 E-value=2.4e-10 Score=99.45 Aligned_cols=78 Identities=21% Similarity=0.175 Sum_probs=37.4
Q ss_pred CCCCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh--hcccCCCCcceEeeecCCCCccccCCCCCCCcc
Q 019416 36 IRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL--LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLK 113 (341)
Q Consensus 36 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~ 113 (341)
+..+++|++|++++| .++.++ .+..+++|++|++++| .+.++ +.. +++|++|++++| .+..++.... ++|+
T Consensus 37 ~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~l~~--l~~L~~L~L~~N-~l~~l~~~~~-~~L~ 109 (263)
T 1xeu_A 37 QKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHN-QISDLSPLKD--LTKLEELSVNRN-RLKNLNGIPS-ACLS 109 (263)
T ss_dssp HHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGGGTT--CSSCCEEECCSS-CCSCCTTCCC-SSCC
T ss_pred hhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCC-ccCCChhhcc--CCCCCEEECCCC-ccCCcCcccc-Cccc
Confidence 344555555555554 333443 3444555555555552 33333 444 555555555543 3444433333 4455
Q ss_pred EEEEeCC
Q 019416 114 RLKICDC 120 (341)
Q Consensus 114 ~L~l~~~ 120 (341)
+|++++|
T Consensus 110 ~L~L~~N 116 (263)
T 1xeu_A 110 RLFLDNN 116 (263)
T ss_dssp EEECCSS
T ss_pred EEEccCC
Confidence 5555544
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.99 E-value=5.6e-09 Score=88.73 Aligned_cols=125 Identities=21% Similarity=0.286 Sum_probs=71.3
Q ss_pred ccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCC-CCCCCcceEecccCcccccchhh-hccCCCcCeEe
Q 019416 206 ELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGG-LPNTSLTSLLISECENLMSLPHQ-IHKATSLQDLS 283 (341)
Q Consensus 206 ~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~-~~~~~L~~L~l~~~~~l~~l~~~-l~~l~~L~~L~ 283 (341)
+|+.|+++++......|..+..+++|+.|+++++. +..++... ..+++|++|+++++ .++.++.. +..+++|+.|+
T Consensus 41 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 41 NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCC-cCCccChhHhCcchhhCeEe
Confidence 46777776654333335556666677777776643 45554432 23456777777664 46665543 46666777777
Q ss_pred ecCCCCCccCCCC-CCCCCccEEEeecCCCCCccccccccCCCceeEEEEeC
Q 019416 284 VSGCPSLMSFPHG-GLPPNLISLGIIDCENLIPLSQWELHKLKHLNKYTILG 334 (341)
Q Consensus 284 l~~c~~l~~~~~~-~~~~~L~~L~l~~c~~~~~~~~~~i~~~~~L~~l~l~~ 334 (341)
+++ +.++.++.. ...++|++|+++++ .+...+...+..+++|+.|++.+
T Consensus 119 Ls~-N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 119 MCC-NKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFG 168 (229)
T ss_dssp CCS-SCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTT
T ss_pred ccC-CcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeC
Confidence 765 355566544 33566777777665 33322222346666777776666
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.97 E-value=9.9e-09 Score=86.66 Aligned_cols=124 Identities=16% Similarity=0.225 Sum_probs=84.8
Q ss_pred ccceEeeccCcCCCccc-ccCCCCCCcCeEEeecCCCCceec-CCCCCCCCcceEecccCcccccchhh-hccCCCcCeE
Q 019416 206 ELRELEIWDCLELEFLP-EDMHNFTDLNLLSISNCPSLESFP-EGGLPNTSLTSLLISECENLMSLPHQ-IHKATSLQDL 282 (341)
Q Consensus 206 ~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~~~-~~~~~~~~L~~L~l~~~~~l~~l~~~-l~~l~~L~~L 282 (341)
+++.|+++++ .+..++ ..+..+++|+.|+++++. +..+. .....+++|++|+++++ .++.+|.. +..+++|+.|
T Consensus 33 ~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L 109 (220)
T 2v9t_B 33 TITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYGN-KITELPKSLFEGLFSLQLL 109 (220)
T ss_dssp TCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSC-CCEECTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCc-CCCcCHHHhhCCcCCCEEECCCC-cCCccCHhHccCCCCCCEE
Confidence 4888888875 344554 467778888888888854 55553 33334568888888885 57777754 5778888888
Q ss_pred eecCCCCCccCCCCC--CCCCccEEEeecCCCCCccccccccCCCceeEEEEeC
Q 019416 283 SVSGCPSLMSFPHGG--LPPNLISLGIIDCENLIPLSQWELHKLKHLNKYTILG 334 (341)
Q Consensus 283 ~l~~c~~l~~~~~~~--~~~~L~~L~l~~c~~~~~~~~~~i~~~~~L~~l~l~~ 334 (341)
+++++ .+..++... ..++|++|+++++.... .+...+..+++|+.+++++
T Consensus 110 ~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 110 LLNAN-KINCLRVDAFQDLHNLNLLSLYDNKLQT-IAKGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp ECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCS
T ss_pred ECCCC-CCCEeCHHHcCCCCCCCEEECCCCcCCE-ECHHHHhCCCCCCEEEeCC
Confidence 88774 566665443 35788888888864433 2221357778888888887
No 110
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.96 E-value=7.7e-12 Score=120.63 Aligned_cols=85 Identities=22% Similarity=0.247 Sum_probs=57.7
Q ss_pred ccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccc--hhhhccCCCcCeEe
Q 019416 206 ELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSL--PHQIHKATSLQDLS 283 (341)
Q Consensus 206 ~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l--~~~l~~l~~L~~L~ 283 (341)
+|+.|+++++ .+..+|..++.+++|+.|+++++ .++.+| ....+++|++|+++++ .++.+ |..+..+++|+.|+
T Consensus 464 ~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~ 539 (567)
T 1dce_A 464 LVTHLDLSHN-RLRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLN 539 (567)
T ss_dssp TCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEE
T ss_pred cCcEeecCcc-cccccchhhhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEE
Confidence 5777777774 44567777777788888888775 355555 3333467888888875 57766 67778888888888
Q ss_pred ecCCCCCccCCC
Q 019416 284 VSGCPSLMSFPH 295 (341)
Q Consensus 284 l~~c~~l~~~~~ 295 (341)
++++ .+..++.
T Consensus 540 L~~N-~l~~~~~ 550 (567)
T 1dce_A 540 LQGN-SLCQEEG 550 (567)
T ss_dssp CTTS-GGGGSSS
T ss_pred ecCC-cCCCCcc
Confidence 8774 4555543
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.96 E-value=3.1e-09 Score=90.33 Aligned_cols=121 Identities=17% Similarity=0.156 Sum_probs=96.1
Q ss_pred CCCcCeEEcCCCCCCccc-cccccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccCC--CCCCC
Q 019416 39 GETLESLEIDNLSSLASF-LRSELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQD--YFPTT 111 (341)
Q Consensus 39 ~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~ 111 (341)
.++|++|++++|. ++.+ +..+..+++|++|+++++ .+..+ +.. +++|++|++++| .+..++.. ..+++
T Consensus 39 ~~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~--l~~L~~L~Ls~N-~l~~l~~~~~~~l~~ 113 (229)
T 3e6j_A 39 PTNAQILYLHDNQ-ITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDS--LTQLTVLDLGTN-QLTVLPSAVFDRLVH 113 (229)
T ss_dssp CTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTT--CTTCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred CCCCCEEEcCCCc-cCccCHHHhhCccCCcEEECCCC-CCCCcChhhccc--CCCcCEEECCCC-cCCccChhHhCcchh
Confidence 4889999999864 4554 666788999999999994 56555 678 999999999986 67777653 45899
Q ss_pred ccEEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCCC--CCccccceEEeeccC
Q 019416 112 LKRLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPIN--QLPATLRHLRIVNCM 170 (341)
Q Consensus 112 L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~ 170 (341)
|++|++++|. +.. +|..+. ++|+.|++++ +.++.++.. ..+++|+.|++.+++
T Consensus 114 L~~L~Ls~N~-l~~----lp~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 114 LKELFMCCNK-LTE----LPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CCEEECCSSC-CCS----CCTTGGGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred hCeEeccCCc-ccc----cCcccccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 9999999986 455 777666 9999999998 577777754 456899999998764
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.91 E-value=6.7e-09 Score=87.70 Aligned_cols=121 Identities=11% Similarity=0.105 Sum_probs=92.8
Q ss_pred CCcCeEEcCCCCCCccccc-cccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccCC--CCCCCc
Q 019416 40 ETLESLEIDNLSSLASFLR-SELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQD--YFPTTL 112 (341)
Q Consensus 40 ~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L 112 (341)
++|++|+++++ .++.++. .+..+++|++|+++++ .+..+ +.. +++|++|+++++ .+..++.. ..+++|
T Consensus 32 ~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~--l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L 106 (220)
T 2v9t_B 32 ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQG--LRSLNSLVLYGN-KITELPKSLFEGLFSL 106 (220)
T ss_dssp TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTT--CSSCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhC--CcCCCEEECCCC-cCCccCHhHccCCCCC
Confidence 68999999986 5566654 5778999999999984 55554 788 999999999985 77777763 347999
Q ss_pred cEEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCCC--CCccccceEEeeccC
Q 019416 113 KRLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPIN--QLPATLRHLRIVNCM 170 (341)
Q Consensus 113 ~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~ 170 (341)
++|++++|..... .+..+. ++|+.|++++ +.++.++.. ..+++|+.|++++++
T Consensus 107 ~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 107 QLLLLNANKINCL----RVDAFQDLHNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CEEECCSSCCCCC----CTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEECCCCCCCEe----CHHHcCCCCCCCEEECCC-CcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 9999999874332 344444 8999999988 577777654 456789999998764
No 113
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.88 E-value=3.9e-08 Score=82.03 Aligned_cols=124 Identities=27% Similarity=0.333 Sum_probs=89.6
Q ss_pred ccceEeeccCcCCCccc-ccCCCCCCcCeEEeecCCCCceecCCC-CCCCCcceEecccCcccccchh-hhccCCCcCeE
Q 019416 206 ELRELEIWDCLELEFLP-EDMHNFTDLNLLSISNCPSLESFPEGG-LPNTSLTSLLISECENLMSLPH-QIHKATSLQDL 282 (341)
Q Consensus 206 ~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~~~~~~-~~~~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L 282 (341)
+++.|+++++. +..++ ..+..+++|++|+++++ .++.++... ..+++|++|+++++ .++.++. .+..+++|++|
T Consensus 29 ~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 29 QTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp TCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCcEEEcCCCc-cCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC-cCCccCHhHhcCccCCCEE
Confidence 58899998864 44554 45678889999999885 466666543 23578999999985 5777765 36788899999
Q ss_pred eecCCCCCccCCCC--CCCCCccEEEeecCCCCCccccccccCCCceeEEEEeC
Q 019416 283 SVSGCPSLMSFPHG--GLPPNLISLGIIDCENLIPLSQWELHKLKHLNKYTILG 334 (341)
Q Consensus 283 ~l~~c~~l~~~~~~--~~~~~L~~L~l~~c~~~~~~~~~~i~~~~~L~~l~l~~ 334 (341)
+++++ .++.++.. ...++|++|+++++. ++..+...+..+++|+++++++
T Consensus 106 ~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~ 157 (208)
T 2o6s_A 106 ALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHD 157 (208)
T ss_dssp ECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCS
T ss_pred EcCCC-cCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecC
Confidence 99874 67777654 336789999998874 3333332357788999999888
No 114
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.88 E-value=5.3e-09 Score=84.26 Aligned_cols=127 Identities=24% Similarity=0.231 Sum_probs=96.7
Q ss_pred cccceEeeccCcCC-CcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCccccc-chhhhccCCCcCeE
Q 019416 205 LELRELEIWDCLEL-EFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMS-LPHQIHKATSLQDL 282 (341)
Q Consensus 205 ~~L~~L~l~~~~~l-~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~-l~~~l~~l~~L~~L 282 (341)
++|+.|++++|.-. ..+|..+..+++|+.|++++|. ++.+ .....+++|++|+++++ .++. +|..+..+++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSEN-RIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESC-CCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCC-cCchHHHHHHhhCCCCCEE
Confidence 36999999997633 3788888889999999999975 5555 33334579999999996 4766 77777789999999
Q ss_pred eecCCCCCccCCC--C-CCCCCccEEEeecCCCCCcccc---ccccCCCceeEEEEeCCCC
Q 019416 283 SVSGCPSLMSFPH--G-GLPPNLISLGIIDCENLIPLSQ---WELHKLKHLNKYTILGGLP 337 (341)
Q Consensus 283 ~l~~c~~l~~~~~--~-~~~~~L~~L~l~~c~~~~~~~~---~~i~~~~~L~~l~l~~~C~ 337 (341)
++++| .++.++. . ...++|++|++++|.... .+. ..+..+++|++|++++ |+
T Consensus 101 ~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~~-n~ 158 (168)
T 2ell_A 101 NLSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTN-LNDYRESVFKLLPQLTYLDGYD-RE 158 (168)
T ss_dssp ECBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGT-STTHHHHHHTTCSSCCEETTEE-TT
T ss_pred eccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcc-hHHHHHHHHHhCccCcEecCCC-CC
Confidence 99986 6777652 2 446899999999985433 222 2468899999999998 65
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.88 E-value=2.3e-08 Score=90.91 Aligned_cols=167 Identities=16% Similarity=0.135 Sum_probs=90.2
Q ss_pred cEEEEeCCCChHHHHHHhhhhcccccceEeecCCCCccccCCC--C-CccccceEEeeccCCccccCcceeeeCCCCCCc
Q 019416 113 KRLKICDCTNAELILKVLMDQKGLALESLEVDGCSSLFSLPIN--Q-LPATLRHLRIVNCMNLKSLGESSKIRNCDSVVG 189 (341)
Q Consensus 113 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~--~-~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~ 189 (341)
+.++.+++. +.. +|..+.+.++.|++++ +.++.++.. . .+++|+.|+++++ .+..++..
T Consensus 21 ~~l~c~~~~-l~~----iP~~~~~~l~~L~Ls~-N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~----------- 82 (361)
T 2xot_A 21 NILSCSKQQ-LPN----VPQSLPSYTALLDLSH-NNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSE----------- 82 (361)
T ss_dssp TEEECCSSC-CSS----CCSSCCTTCSEEECCS-SCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTT-----------
T ss_pred CEEEeCCCC-cCc----cCccCCCCCCEEECCC-CCCCccChhhhhhcccccCEEECCCC-cCCccChh-----------
Confidence 456655543 444 6655546677777776 456666554 2 4567777777664 23333210
Q ss_pred CCCcccccccccccccccceEeeccCcCCCccc-ccCCCCCCcCeEEeecCCCCceecC-CCCCCCCcceEecccCcccc
Q 019416 190 PEGESSLENMTSSHTLELRELEIWDCLELEFLP-EDMHNFTDLNLLSISNCPSLESFPE-GGLPNTSLTSLLISECENLM 267 (341)
Q Consensus 190 ~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~l~~~~~l~ 267 (341)
+ +. .+++|+.|+++++. +..++ ..|..+++|+.|+++++. +..++. ....+++|++|+++++ .++
T Consensus 83 -----~---~~--~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N-~l~ 149 (361)
T 2xot_A 83 -----A---FV--PVPNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQN-QIS 149 (361)
T ss_dssp -----T---TT--TCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCC
T ss_pred -----h---cc--CCCCCCEEECCCCc-CCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCC-cCC
Confidence 0 11 23357777777643 44443 346666777777777643 444433 2223457777777764 466
Q ss_pred cchhhh----ccCCCcCeEeecCCCCCccCCCCC--CCCC--ccEEEeecCC
Q 019416 268 SLPHQI----HKATSLQDLSVSGCPSLMSFPHGG--LPPN--LISLGIIDCE 311 (341)
Q Consensus 268 ~l~~~l----~~l~~L~~L~l~~c~~l~~~~~~~--~~~~--L~~L~l~~c~ 311 (341)
.+|..+ ..+++|+.|++++ +.++.++... ..+. ++.|++.+++
T Consensus 150 ~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 150 RFPVELIKDGNKLPKLMLLDLSS-NKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp SCCGGGTC----CTTCCEEECCS-SCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred eeCHHHhcCcccCCcCCEEECCC-CCCCccCHHHhhhccHhhcceEEecCCC
Confidence 666543 4566777777766 3555554321 1222 3566666643
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.86 E-value=2.6e-08 Score=84.06 Aligned_cols=29 Identities=10% Similarity=0.156 Sum_probs=13.0
Q ss_pred eEeeecCCCCccccCCCCCCCccEEEEeCCC
Q 019416 91 YLEFSSCLFFSNSKQDYFPTTLKRLKICDCT 121 (341)
Q Consensus 91 ~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~ 121 (341)
.++++++ .+..+|. ..++.+++|+++++.
T Consensus 15 ~l~~s~n-~l~~iP~-~~~~~~~~L~L~~N~ 43 (220)
T 2v70_A 15 TVDCSNQ-KLNKIPE-HIPQYTAELRLNNNE 43 (220)
T ss_dssp EEECCSS-CCSSCCS-CCCTTCSEEECCSSC
T ss_pred EeEeCCC-CcccCcc-CCCCCCCEEEcCCCc
Confidence 4455442 4444443 223444555555543
No 117
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.85 E-value=4.4e-09 Score=82.94 Aligned_cols=124 Identities=23% Similarity=0.249 Sum_probs=93.7
Q ss_pred cccceEeeccCcCC-CcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCccccc-chhhhccCCCcCeE
Q 019416 205 LELRELEIWDCLEL-EFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMS-LPHQIHKATSLQDL 282 (341)
Q Consensus 205 ~~L~~L~l~~~~~l-~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~-l~~~l~~l~~L~~L 282 (341)
++++.|+++++... ..+|..+..+++|+.|++++| .++.+ .....+++|++|+++++ .++. +|..+..+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSS-CCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCC-cccchHHHHhhhCCCCCEE
Confidence 36999999997643 378888889999999999997 45555 33334579999999996 4776 78777889999999
Q ss_pred eecCCCCCccCC--CC-CCCCCccEEEeecCCCCCcccc---ccccCCCceeEEEEe
Q 019416 283 SVSGCPSLMSFP--HG-GLPPNLISLGIIDCENLIPLSQ---WELHKLKHLNKYTIL 333 (341)
Q Consensus 283 ~l~~c~~l~~~~--~~-~~~~~L~~L~l~~c~~~~~~~~---~~i~~~~~L~~l~l~ 333 (341)
++++| .++.++ .. ...++|++|++++|. +...+. ..+..+++|+.|+++
T Consensus 94 ~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGN-KIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTS-CCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCC-cCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 99985 566653 22 446899999999984 343322 236788999998765
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.84 E-value=5.1e-09 Score=84.35 Aligned_cols=123 Identities=18% Similarity=0.127 Sum_probs=93.2
Q ss_pred CCCCCcCeEEcCCCCCCc--cccccccCCCCccEEeccCCCCchhh--hcccCCCCcceEeeecCCCCcc-ccCCC-CCC
Q 019416 37 RTGETLESLEIDNLSSLA--SFLRSELAATTVKQLKINKCPDLEVL--LHRMAYTSLEYLEFSSCLFFSN-SKQDY-FPT 110 (341)
Q Consensus 37 ~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~l~~L~~L~l~~~~~l~~-~~~~~-~~~ 110 (341)
...++|++|++++|. ++ .+|..+..+++|++|++++| .+..+ +.. +++|++|++++| .+.. ++... .++
T Consensus 21 ~~~~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n-~l~~~~~~~~--l~~L~~L~Ls~N-~l~~~~~~~~~~l~ 95 (168)
T 2ell_A 21 RTPAAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINV-GLISVSNLPK--LPKLKKLELSEN-RIFGGLDMLAEKLP 95 (168)
T ss_dssp SCTTSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESS-CCCCCSSCCC--CSSCCEEEEESC-CCCSCCCHHHHHCT
T ss_pred CCcccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCC-CCCChhhhcc--CCCCCEEECcCC-cCchHHHHHHhhCC
Confidence 346889999999875 44 67777788999999999995 46555 778 999999999987 4444 55433 279
Q ss_pred CccEEEEeCCCChHHHHHHhh--hhcc--cccceEeecCCCCccccCC----C-CCccccceEEeeccC
Q 019416 111 TLKRLKICDCTNAELILKVLM--DQKG--LALESLEVDGCSSLFSLPI----N-QLPATLRHLRIVNCM 170 (341)
Q Consensus 111 ~L~~L~l~~~~~~~~~~~~~~--~~~~--~~L~~L~l~~~~~l~~l~~----~-~~~~~L~~L~l~~~~ 170 (341)
+|++|++++|. +.. ++ ..+. ++|+.|+++++ .++.++. . ..+++|+.|+++++.
T Consensus 96 ~L~~L~Ls~N~-l~~----~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 96 NLTHLNLSGNK-LKD----ISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp TCCEEECBSSS-CCS----SGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred CCCEEeccCCc-cCc----chhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 99999999986 444 44 3333 89999999884 6666665 2 567899999998864
No 119
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.84 E-value=1.5e-08 Score=92.22 Aligned_cols=167 Identities=20% Similarity=0.210 Sum_probs=116.2
Q ss_pred ceEeeecCCCCccccCCCCCCCccEEEEeCCCChHHHHHHhhhh-c--c-cccceEeecCCCCccccCCC--CCccccce
Q 019416 90 EYLEFSSCLFFSNSKQDYFPTTLKRLKICDCTNAELILKVLMDQ-K--G-LALESLEVDGCSSLFSLPIN--QLPATLRH 163 (341)
Q Consensus 90 ~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~--~-~~L~~L~l~~~~~l~~l~~~--~~~~~L~~ 163 (341)
+.++.++ ..+..+|. ..++.++.|+++++. +.. ++.. + . ++|++|++++ +.++.++.. ..+++|+.
T Consensus 21 ~~l~c~~-~~l~~iP~-~~~~~l~~L~Ls~N~-l~~----l~~~~~~~~l~~L~~L~L~~-N~i~~i~~~~~~~l~~L~~ 92 (361)
T 2xot_A 21 NILSCSK-QQLPNVPQ-SLPSYTALLDLSHNN-LSR----LRAEWTPTRLTNLHSLLLSH-NHLNFISSEAFVPVPNLRY 92 (361)
T ss_dssp TEEECCS-SCCSSCCS-SCCTTCSEEECCSSC-CCE----ECTTSSSSCCTTCCEEECCS-SCCCEECTTTTTTCTTCCE
T ss_pred CEEEeCC-CCcCccCc-cCCCCCCEEECCCCC-CCc----cChhhhhhcccccCEEECCC-CcCCccChhhccCCCCCCE
Confidence 4677766 46777775 456779999999986 343 4332 2 2 8999999988 577777754 55689999
Q ss_pred EEeeccCCccccCcceeeeCCCCCCcCCCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCc
Q 019416 164 LRIVNCMNLKSLGESSKIRNCDSVVGPEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLE 243 (341)
Q Consensus 164 L~l~~~~~l~~~~~~l~l~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~ 243 (341)
|+++++. ++.++.. . + ..+++|+.|+++++......+..+..+++|+.|+++++ .+.
T Consensus 93 L~Ls~N~-l~~~~~~----------------~---~--~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~ 149 (361)
T 2xot_A 93 LDLSSNH-LHTLDEF----------------L---F--SDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QIS 149 (361)
T ss_dssp EECCSSC-CCEECTT----------------T---T--TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCC
T ss_pred EECCCCc-CCcCCHH----------------H---h--CCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCC
Confidence 9998853 5444320 0 1 13446999999986543333678888999999999985 466
Q ss_pred eecCCCC----CCCCcceEecccCcccccchh-hhccCCC--cCeEeecCCC
Q 019416 244 SFPEGGL----PNTSLTSLLISECENLMSLPH-QIHKATS--LQDLSVSGCP 288 (341)
Q Consensus 244 ~~~~~~~----~~~~L~~L~l~~~~~l~~l~~-~l~~l~~--L~~L~l~~c~ 288 (341)
.++...+ .+++|++|+++++ .++.+|. .+..++. ++.|++.+++
T Consensus 150 ~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 150 RFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp SCCGGGTC----CTTCCEEECCSS-CCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred eeCHHHhcCcccCCcCCEEECCCC-CCCccCHHHhhhccHhhcceEEecCCC
Confidence 6665432 3579999999985 6888774 5677776 4888888743
No 120
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.81 E-value=7.6e-08 Score=81.18 Aligned_cols=124 Identities=16% Similarity=0.203 Sum_probs=82.5
Q ss_pred ccceEeeccCcCCCcc-c-ccCCCCCCcCeEEeecCCCCceecCC-CCCCCCcceEecccCcccccchh-hhccCCCcCe
Q 019416 206 ELRELEIWDCLELEFL-P-EDMHNFTDLNLLSISNCPSLESFPEG-GLPNTSLTSLLISECENLMSLPH-QIHKATSLQD 281 (341)
Q Consensus 206 ~L~~L~l~~~~~l~~l-~-~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~ 281 (341)
.++.|+++++ .+..+ + ..+..+++|+.|+++++ .++.++.. ...+++|++|+++++ .++.++. .+..+++|++
T Consensus 33 ~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~ 109 (220)
T 2v70_A 33 YTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSN-RLENVQHKMFKGLESLKT 109 (220)
T ss_dssp TCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCCCCGGGGTTCSSCCE
T ss_pred CCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCC-ccCccCHhHhcCCcCCCE
Confidence 3778888875 34444 2 34677888888888875 36666552 333568888888875 4666654 4777888888
Q ss_pred EeecCCCCCccCCCC--CCCCCccEEEeecCCCCCccccccccCCCceeEEEEeC
Q 019416 282 LSVSGCPSLMSFPHG--GLPPNLISLGIIDCENLIPLSQWELHKLKHLNKYTILG 334 (341)
Q Consensus 282 L~l~~c~~l~~~~~~--~~~~~L~~L~l~~c~~~~~~~~~~i~~~~~L~~l~l~~ 334 (341)
|+++++ .+..++.. ...++|++|+++++......+. .+..+++|+.|++++
T Consensus 110 L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 110 LMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQITTVAPG-AFDTLHSLSTLNLLA 162 (220)
T ss_dssp EECTTS-CCCCBCTTSSTTCTTCSEEECTTSCCCCBCTT-TTTTCTTCCEEECCS
T ss_pred EECCCC-cCCeECHhHcCCCccCCEEECCCCcCCEECHH-HhcCCCCCCEEEecC
Confidence 888774 56666443 2357888888877643332233 367788888888877
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.79 E-value=6.6e-09 Score=81.91 Aligned_cols=120 Identities=20% Similarity=0.126 Sum_probs=85.9
Q ss_pred CCCCcCeEEcCCCCCC-ccccccccCCCCccEEeccCCCCchhh--hcccCCCCcceEeeecCCCCcc-ccCCC-CCCCc
Q 019416 38 TGETLESLEIDNLSSL-ASFLRSELAATTVKQLKINKCPDLEVL--LHRMAYTSLEYLEFSSCLFFSN-SKQDY-FPTTL 112 (341)
Q Consensus 38 ~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~l~~L~~L~l~~~~~l~~-~~~~~-~~~~L 112 (341)
..++|++|++++|... ..+|..+..+++|++|++++| .+..+ +.. +++|++|++++| .+.. ++... .+++|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~--l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L 90 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSIANLPK--LNKLKKLELSDN-RVSGGLEVLAEKCPNL 90 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCCTTCCC--CTTCCEEECCSS-CCCSCTHHHHHHCTTC
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCchhhhc--CCCCCEEECCCC-cccchHHHHhhhCCCC
Confidence 4578999999987543 267776788899999999985 55554 778 899999999886 4444 55432 37889
Q ss_pred cEEEEeCCCChHHHHHHhh--hhcc--cccceEeecCCCCccccCC-----CCCccccceEEee
Q 019416 113 KRLKICDCTNAELILKVLM--DQKG--LALESLEVDGCSSLFSLPI-----NQLPATLRHLRIV 167 (341)
Q Consensus 113 ~~L~l~~~~~~~~~~~~~~--~~~~--~~L~~L~l~~~~~l~~l~~-----~~~~~~L~~L~l~ 167 (341)
++|++++|.. .. ++ ..+. ++|++|+++++ .++.++. ...+++|+.|+++
T Consensus 91 ~~L~ls~N~i-~~----~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 91 THLNLSGNKI-KD----LSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CEEECTTSCC-CS----HHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CEEECCCCcC-CC----hHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 9999999873 33 32 3343 88999999884 6766665 1445778887764
No 122
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.75 E-value=1.6e-07 Score=84.12 Aligned_cols=97 Identities=14% Similarity=0.134 Sum_probs=44.1
Q ss_pred CCcCeEEeecCCCCceecCCCCC-CCCcceEecccCcccccchh-hhccCCCcC-eEeecCCCCCccCCCCCC--CCCcc
Q 019416 229 TDLNLLSISNCPSLESFPEGGLP-NTSLTSLLISECENLMSLPH-QIHKATSLQ-DLSVSGCPSLMSFPHGGL--PPNLI 303 (341)
Q Consensus 229 ~~L~~L~l~~c~~l~~~~~~~~~-~~~L~~L~l~~~~~l~~l~~-~l~~l~~L~-~L~l~~c~~l~~~~~~~~--~~~L~ 303 (341)
++|+.+++.++ .++.++...+. +++|++|++.+. ++.++. .+..+++|+ .+.+.+ .++.++...| .++|+
T Consensus 226 ~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~ 300 (329)
T 3sb4_A 226 PNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLR 300 (329)
T ss_dssp TTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEE
T ss_pred CCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCC
Confidence 45555555442 24444443221 345555555541 444443 345555555 555543 4445544433 34555
Q ss_pred EEEeecCCCCCccccccccCCCceeEEE
Q 019416 304 SLGIIDCENLIPLSQWELHKLKHLNKYT 331 (341)
Q Consensus 304 ~L~l~~c~~~~~~~~~~i~~~~~L~~l~ 331 (341)
.+++.+. .++..+...+..+++|+.++
T Consensus 301 ~l~l~~n-~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 301 YVLATGD-KITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEEECSS-CCCEECTTTTCTTCCCCEEE
T ss_pred EEEeCCC-ccCccchhhhcCCcchhhhc
Confidence 5555332 23322222345556666554
No 123
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.66 E-value=2.3e-08 Score=81.17 Aligned_cols=123 Identities=11% Similarity=0.029 Sum_probs=90.3
Q ss_pred CCCCCCcCeEEcCCCCCCccccccccCC-CCccEEeccCCCCchhh--hcccCCCCcceEeeecCCCCccccCC--CCCC
Q 019416 36 IRTGETLESLEIDNLSSLASFLRSELAA-TTVKQLKINKCPDLEVL--LHRMAYTSLEYLEFSSCLFFSNSKQD--YFPT 110 (341)
Q Consensus 36 l~~~~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~l~~~--~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~ 110 (341)
+..+++|++|++++| .++.++. +..+ ++|+.|++++| .+..+ +.. +++|++|++++| .+..++.. ..++
T Consensus 15 ~~~~~~L~~L~l~~n-~l~~i~~-~~~~~~~L~~L~Ls~N-~l~~~~~l~~--l~~L~~L~Ls~N-~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 15 YTNAVRDRELDLRGY-KIPVIEN-LGATLDQFDAIDFSDN-EIRKLDGFPL--LRRLKTLLVNNN-RICRIGEGLDQALP 88 (176)
T ss_dssp EECTTSCEEEECTTS-CCCSCCC-GGGGTTCCSEEECCSS-CCCEECCCCC--CSSCCEEECCSS-CCCEECSCHHHHCT
T ss_pred cCCcCCceEEEeeCC-CCchhHH-hhhcCCCCCEEECCCC-CCCccccccc--CCCCCEEECCCC-cccccCcchhhcCC
Confidence 456889999999987 4556644 4444 49999999984 56655 788 999999999986 66666642 4478
Q ss_pred CccEEEEeCCCChHHHHHHhhh--hcc--cccceEeecCCCCccccCCC-----CCccccceEEeeccC
Q 019416 111 TLKRLKICDCTNAELILKVLMD--QKG--LALESLEVDGCSSLFSLPIN-----QLPATLRHLRIVNCM 170 (341)
Q Consensus 111 ~L~~L~l~~~~~~~~~~~~~~~--~~~--~~L~~L~l~~~~~l~~l~~~-----~~~~~L~~L~l~~~~ 170 (341)
+|++|++++|. +.. +|. .+. ++|+.|+++++ .+..++.. ..+++|+.|+++++.
T Consensus 89 ~L~~L~L~~N~-i~~----~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 89 DLTELILTNNS-LVE----LGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp TCCEEECCSCC-CCC----GGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCEEECCCCc-CCc----chhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 99999999986 444 555 333 89999999884 56666542 345788888887753
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.66 E-value=3.5e-08 Score=80.13 Aligned_cols=124 Identities=13% Similarity=0.195 Sum_probs=81.4
Q ss_pred cccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccchhhh-ccCCCcCeEe
Q 019416 205 LELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQI-HKATSLQDLS 283 (341)
Q Consensus 205 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l-~~l~~L~~L~ 283 (341)
++|+.|+++++ .+..++......++|+.|+++++ .++.+ .....+++|++|+++++ .++.+|..+ ..+++|++|+
T Consensus 19 ~~L~~L~l~~n-~l~~i~~~~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 19 VRDRELDLRGY-KIPVIENLGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp TSCEEEECTTS-CCCSCCCGGGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCEEE
T ss_pred CCceEEEeeCC-CCchhHHhhhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCC-cccccCcchhhcCCCCCEEE
Confidence 35888888876 44555443333348888888886 45555 33333468888888885 577777544 7788888888
Q ss_pred ecCCCCCccCCC--C-CCCCCccEEEeecCCCCCccccc---cccCCCceeEEEEeC
Q 019416 284 VSGCPSLMSFPH--G-GLPPNLISLGIIDCENLIPLSQW---ELHKLKHLNKYTILG 334 (341)
Q Consensus 284 l~~c~~l~~~~~--~-~~~~~L~~L~l~~c~~~~~~~~~---~i~~~~~L~~l~l~~ 334 (341)
++++ .+..++. . ...++|++|++++++... .+.+ .+..+++|+.+++++
T Consensus 95 L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 95 LTNN-SLVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp CCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEE
T ss_pred CCCC-cCCcchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCc
Confidence 8774 5666664 2 346788888888875432 2221 356778888888776
No 125
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.65 E-value=1e-07 Score=85.44 Aligned_cols=95 Identities=11% Similarity=0.112 Sum_probs=48.1
Q ss_pred cccceEeeccCcCCCccc-ccCCCCCCcCeEEeecCCCCceecCCCC-CCCCcc-eEecccCcccccch-hhhccCCCcC
Q 019416 205 LELRELEIWDCLELEFLP-EDMHNFTDLNLLSISNCPSLESFPEGGL-PNTSLT-SLLISECENLMSLP-HQIHKATSLQ 280 (341)
Q Consensus 205 ~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~~~~~~~-~~~~L~-~L~l~~~~~l~~l~-~~l~~l~~L~ 280 (341)
++|+.+++.++ .++.++ ..|.++++|+.+++.+. ++.++...+ .+++|+ .+.+.+ .++.++ ..+..+++|+
T Consensus 226 ~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~ 300 (329)
T 3sb4_A 226 PNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLR 300 (329)
T ss_dssp TTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEE
T ss_pred CCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCC
Confidence 34666666543 244443 34555566666666552 555554332 234565 666654 355554 2455666666
Q ss_pred eEeecCCCCCccCCCCCC--CCCccEE
Q 019416 281 DLSVSGCPSLMSFPHGGL--PPNLISL 305 (341)
Q Consensus 281 ~L~l~~c~~l~~~~~~~~--~~~L~~L 305 (341)
.+++.+ +.++.++...| .++|+.+
T Consensus 301 ~l~l~~-n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 301 YVLATG-DKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp EEEECS-SCCCEECTTTTCTTCCCCEE
T ss_pred EEEeCC-CccCccchhhhcCCcchhhh
Confidence 666643 34555555433 2344444
No 126
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.64 E-value=2.7e-06 Score=78.30 Aligned_cols=80 Identities=18% Similarity=0.315 Sum_probs=37.5
Q ss_pred ccCCCCCCcCeEEeecCCCCceecCCCCC-CCCcceEecccCcccccchh-hhccCCCcCeEeecCCCCCccCCCC---C
Q 019416 223 EDMHNFTDLNLLSISNCPSLESFPEGGLP-NTSLTSLLISECENLMSLPH-QIHKATSLQDLSVSGCPSLMSFPHG---G 297 (341)
Q Consensus 223 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~-~~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~~~~~---~ 297 (341)
..|.++++|+.+++.+ .++.+....+. +++|+.+.+.. +++.+.. .+..+ +|+.+.+.+. .+..++.. +
T Consensus 294 ~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~ 367 (401)
T 4fdw_A 294 YCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYG 367 (401)
T ss_dssp TTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCC
T ss_pred HHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC-CCcccccccccC
Confidence 3445555566655553 34444443332 24555555543 2444432 34555 5666666542 33333333 2
Q ss_pred CCCCccEEEee
Q 019416 298 LPPNLISLGII 308 (341)
Q Consensus 298 ~~~~L~~L~l~ 308 (341)
++.++..+.+.
T Consensus 368 ~~~~l~~l~vp 378 (401)
T 4fdw_A 368 FPDDITVIRVP 378 (401)
T ss_dssp SCTTCCEEEEC
T ss_pred CCCCccEEEeC
Confidence 23345555553
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.61 E-value=4e-07 Score=75.06 Aligned_cols=102 Identities=24% Similarity=0.370 Sum_probs=81.7
Q ss_pred ccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCC-CCCCCCcceEecccCcccccchh-hhccCCCcCeEe
Q 019416 206 ELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEG-GLPNTSLTSLLISECENLMSLPH-QIHKATSLQDLS 283 (341)
Q Consensus 206 ~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~ 283 (341)
+++.|+++++ .+..+|..+..+++|+.|+++++ .++.++.. ...+++|++|+++++ .++.++. .+..+++|+.|+
T Consensus 32 ~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 32 DVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRTFDGLKSLRLLS 108 (193)
T ss_dssp TCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEE
T ss_pred CCCEEECCCC-cCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCC-ccCEeCHHHhCCCCCCCEEE
Confidence 5999999985 56788888999999999999996 46666553 334579999999995 5887764 688999999999
Q ss_pred ecCCCCCccCCCCCC--CCCccEEEeecCC
Q 019416 284 VSGCPSLMSFPHGGL--PPNLISLGIIDCE 311 (341)
Q Consensus 284 l~~c~~l~~~~~~~~--~~~L~~L~l~~c~ 311 (341)
+++ +.+..++...+ +++|+.|++.+++
T Consensus 109 L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 109 LHG-NDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCS-SCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCC-CCCCeeChhhhhcCccccEEEeCCCC
Confidence 988 57888877533 6899999998864
No 128
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.56 E-value=1.5e-07 Score=90.71 Aligned_cols=113 Identities=18% Similarity=0.172 Sum_probs=87.0
Q ss_pred CcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh---hcccCCCCcceEeeecCCCCccccCCCCCCCccEEEE
Q 019416 41 TLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL---LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLKRLKI 117 (341)
Q Consensus 41 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~---~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l 117 (341)
.|++|++++| .++.+|. +..+++|+.|++++| .+..+ ++. +++|+.|++++| .+..+|..+.+++|+.|++
T Consensus 442 ~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~--l~~L~~L~Ls~N-~l~~lp~l~~l~~L~~L~L 515 (567)
T 1dce_A 442 DVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHN-RLRALPPALAA--LRCLEVLQASDN-ALENVDGVANLPRLQELLL 515 (567)
T ss_dssp TCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSS-CCCCCCGGGGG--CTTCCEEECCSS-CCCCCGGGTTCSSCCEEEC
T ss_pred CceEEEecCC-CCCCCcC-ccccccCcEeecCcc-cccccchhhhc--CCCCCEEECCCC-CCCCCcccCCCCCCcEEEC
Confidence 5889999986 6667776 888999999999984 55555 888 999999999885 6777886667899999999
Q ss_pred eCCCChHHHHHHh--hhhcc--cccceEeecCCCCccccCCC-----CCccccceEE
Q 019416 118 CDCTNAELILKVL--MDQKG--LALESLEVDGCSSLFSLPIN-----QLPATLRHLR 165 (341)
Q Consensus 118 ~~~~~~~~~~~~~--~~~~~--~~L~~L~l~~~~~l~~l~~~-----~~~~~L~~L~ 165 (341)
++|. +.. + |..++ ++|+.|++++ +.++..+.. ..+++|+.|+
T Consensus 516 s~N~-l~~----~~~p~~l~~l~~L~~L~L~~-N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 516 CNNR-LQQ----SAAIQPLVSCPRLVLLNLQG-NSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CSSC-CCS----SSTTGGGGGCTTCCEEECTT-SGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCC-CCC----CCCcHHHhcCCCCCEEEecC-CcCCCCccHHHHHHHHCcccCccC
Confidence 9986 344 4 66666 8999999988 466666543 1256777775
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.55 E-value=5.3e-07 Score=74.18 Aligned_cols=102 Identities=16% Similarity=0.153 Sum_probs=59.2
Q ss_pred ccceEeeccCcCCCcccc--cCCCCCCcCeEEeecCCCCceec-CCCCCCCCcceEecccCcccccchh-hhccCCCcCe
Q 019416 206 ELRELEIWDCLELEFLPE--DMHNFTDLNLLSISNCPSLESFP-EGGLPNTSLTSLLISECENLMSLPH-QIHKATSLQD 281 (341)
Q Consensus 206 ~L~~L~l~~~~~l~~l~~--~~~~l~~L~~L~l~~c~~l~~~~-~~~~~~~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~ 281 (341)
+++.|+++++ .+..++. .+..+++|++|+++++. ++.++ .....+++|++|+++++ .++.++. .+..+++|++
T Consensus 30 ~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~ 106 (192)
T 1w8a_A 30 HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQLKT 106 (192)
T ss_dssp TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSSTTCTTCCE
T ss_pred CCCEEECCCC-cCCccCCccccccCCCCCEEECCCCC-CCCcCHhHcCCcccCCEEECCCC-cCCccCHHHhcCCCCCCE
Confidence 4777777764 3444443 25667777777777753 44442 23333457777777764 4665543 3666777777
Q ss_pred EeecCCCCCccCCCC--CCCCCccEEEeecCC
Q 019416 282 LSVSGCPSLMSFPHG--GLPPNLISLGIIDCE 311 (341)
Q Consensus 282 L~l~~c~~l~~~~~~--~~~~~L~~L~l~~c~ 311 (341)
|+++++ .+..+... ...++|++|++++++
T Consensus 107 L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 107 LNLYDN-QISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp EECCSS-CCCEECTTSSTTCTTCCEEECTTCC
T ss_pred EECCCC-cCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 777663 45544332 235677777776654
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.51 E-value=1.5e-06 Score=70.25 Aligned_cols=105 Identities=30% Similarity=0.323 Sum_probs=73.6
Q ss_pred cccceEeeccCcCCCccc-ccCCCCCCcCeEEeecCCCCceecCCC-CCCCCcceEecccCcccccchh-hhccCCCcCe
Q 019416 205 LELRELEIWDCLELEFLP-EDMHNFTDLNLLSISNCPSLESFPEGG-LPNTSLTSLLISECENLMSLPH-QIHKATSLQD 281 (341)
Q Consensus 205 ~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~~~~~~-~~~~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~ 281 (341)
++|+.|+++++. +..++ ..+..+++|++|+++++ .+..++... ..+++|++|+++++ .++.++. .+..+++|++
T Consensus 28 ~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~ 104 (177)
T 2o6r_A 28 SSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKE 104 (177)
T ss_dssp TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred CCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCC-CccccCHHHhhCCcccCE
Confidence 458888888854 44554 45677888888888885 456565533 34568888888885 5777765 3577888888
Q ss_pred EeecCCCCCccCCCCC--CCCCccEEEeecCCCC
Q 019416 282 LSVSGCPSLMSFPHGG--LPPNLISLGIIDCENL 313 (341)
Q Consensus 282 L~l~~c~~l~~~~~~~--~~~~L~~L~l~~c~~~ 313 (341)
|+++++ .++.++... ..++|++|++++++..
T Consensus 105 L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 105 LALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp EECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred EECcCC-cceEeCHHHhcCCcccCEEEecCCCee
Confidence 888874 677776643 3578888888887543
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.51 E-value=5.4e-07 Score=74.28 Aligned_cols=98 Identities=12% Similarity=0.068 Sum_probs=73.8
Q ss_pred CCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccC--CCCCCCc
Q 019416 39 GETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQ--DYFPTTL 112 (341)
Q Consensus 39 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L 112 (341)
.++|++|+++++ .++.+|..+..+++|+.|++++ +.+..+ +.. +++|++|+++++ .+..++. ...+++|
T Consensus 30 ~~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~-N~i~~i~~~~f~~--l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L 104 (193)
T 2wfh_A 30 PRDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSN-NRISTLSNQSFSN--MTQLLTLILSYN-RLRCIPPRTFDGLKSL 104 (193)
T ss_dssp CTTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCS-SCCCCCCTTTTTT--CTTCCEEECCSS-CCCBCCTTTTTTCTTC
T ss_pred CCCCCEEECCCC-cCchhHHHhhcccCCCEEECCC-CcCCEeCHhHccC--CCCCCEEECCCC-ccCEeCHHHhCCCCCC
Confidence 367999999975 5667777788889999999998 455554 777 899999999885 6666654 3347899
Q ss_pred cEEEEeCCCChHHHHHHhhhh-cc--cccceEeecCC
Q 019416 113 KRLKICDCTNAELILKVLMDQ-KG--LALESLEVDGC 146 (341)
Q Consensus 113 ~~L~l~~~~~~~~~~~~~~~~-~~--~~L~~L~l~~~ 146 (341)
++|++++|. +.. +|.. +. ++|+.|++.++
T Consensus 105 ~~L~L~~N~-l~~----~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 105 RLLSLHGND-ISV----VPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CEEECCSSC-CCB----CCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCC-CCe----eChhhhhcCccccEEEeCCC
Confidence 999999986 444 5543 22 88899998874
No 132
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.46 E-value=3e-05 Score=71.33 Aligned_cols=248 Identities=10% Similarity=0.145 Sum_probs=153.6
Q ss_pred CCCcCeEEcCCCCCCcccccc-ccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccCCCC--CCC
Q 019416 39 GETLESLEIDNLSSLASFLRS-ELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQDYF--PTT 111 (341)
Q Consensus 39 ~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~~~~--~~~ 111 (341)
+..++.+.+.+ .++.++.. +.. .+|+.+.+.+. +..+ |.. + +|+.+.+.+ .+..++...| +++
T Consensus 112 ~~~l~~i~ip~--~i~~I~~~aF~~-~~L~~i~l~~~--i~~I~~~aF~~--~-~L~~i~lp~--~l~~I~~~aF~~c~~ 181 (401)
T 4fdw_A 112 LKGYNEIILPN--SVKSIPKDAFRN-SQIAKVVLNEG--LKSIGDMAFFN--S-TVQEIVFPS--TLEQLKEDIFYYCYN 181 (401)
T ss_dssp CSSCSEEECCT--TCCEECTTTTTT-CCCSEEECCTT--CCEECTTTTTT--C-CCCEEECCT--TCCEECSSTTTTCTT
T ss_pred cCCccEEEECC--ccCEehHhhccc-CCccEEEeCCC--ccEECHHhcCC--C-CceEEEeCC--CccEehHHHhhCccc
Confidence 46677777763 45555443 444 36888887652 3333 444 3 578887764 5666655444 677
Q ss_pred ccEEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCCC--CCccccceEEeeccCCccccCcceeeeCCCCC
Q 019416 112 LKRLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPIN--QLPATLRHLRIVNCMNLKSLGESSKIRNCDSV 187 (341)
Q Consensus 112 L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l 187 (341)
|+.+++.++. +.. ++...+ .+|+.+.+.. .++.++.. ..+++|+.+.+.. +++.++..
T Consensus 182 L~~l~l~~n~-l~~----I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~--------- 243 (401)
T 4fdw_A 182 LKKADLSKTK-ITK----LPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPE--NVSTIGQE--------- 243 (401)
T ss_dssp CCEEECTTSC-CSE----ECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCT--TCCEECTT---------
T ss_pred CCeeecCCCc-ceE----echhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEecCC--CccCcccc---------
Confidence 8888887653 333 444444 7777777753 46666655 3456778777764 34444321
Q ss_pred CcCCCcccccccccccccccceEeeccCcCCCcc-cccCCCCCCcCeEEeecCCC----CceecCCCC-CCCCcceEecc
Q 019416 188 VGPEGESSLENMTSSHTLELRELEIWDCLELEFL-PEDMHNFTDLNLLSISNCPS----LESFPEGGL-PNTSLTSLLIS 261 (341)
Q Consensus 188 ~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~----l~~~~~~~~-~~~~L~~L~l~ 261 (341)
++.. .+|+.+.+.+ .++.+ ...|..+++|+.+.+.+... ...++...+ .+++|+.+.+.
T Consensus 244 -------aF~~------~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~ 308 (401)
T 4fdw_A 244 -------AFRE------SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP 308 (401)
T ss_dssp -------TTTT------CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC
T ss_pred -------cccc------CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC
Confidence 1111 2488888843 45566 36778899999999976321 123544332 35689999998
Q ss_pred cCcccccchh-hhccCCCcCeEeecCCCCCccCCCCCCC-CCccEEEeecCCCCCccccccccCC-CceeEEEEeC
Q 019416 262 ECENLMSLPH-QIHKATSLQDLSVSGCPSLMSFPHGGLP-PNLISLGIIDCENLIPLSQWELHKL-KHLNKYTILG 334 (341)
Q Consensus 262 ~~~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~-~~L~~L~l~~c~~~~~~~~~~i~~~-~~L~~l~l~~ 334 (341)
+ .++.++. .+.++++|+.+.+.. .++.++...|- .+|+.+++.++.--. .....+..+ .+++.+++..
T Consensus 309 ~--~i~~I~~~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~~L~~l~l~~n~~~~-l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 309 E--SIRILGQGLLGGNRKVTQLTIPA--NVTQINFSAFNNTGIKEVKVEGTTPPQ-VFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp T--TCCEECTTTTTTCCSCCEEEECT--TCCEECTTSSSSSCCCEEEECCSSCCB-CCCSSCCCSCTTCCEEEECG
T ss_pred C--ceEEEhhhhhcCCCCccEEEECc--cccEEcHHhCCCCCCCEEEEcCCCCcc-cccccccCCCCCccEEEeCH
Confidence 4 4777764 678899999999954 57788776441 289999998764333 211134555 4677887764
No 133
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.44 E-value=1.3e-06 Score=71.93 Aligned_cols=81 Identities=15% Similarity=0.206 Sum_probs=41.0
Q ss_pred cccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCC-CCCCCcceEecccCcccccc-hhhhccCCCcCeE
Q 019416 205 LELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGG-LPNTSLTSLLISECENLMSL-PHQIHKATSLQDL 282 (341)
Q Consensus 205 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~-~~~~~L~~L~l~~~~~l~~l-~~~l~~l~~L~~L 282 (341)
++|+.|+++++.-....|..+..+++|++|+++++ .+..++... ..+++|++|+++++ .++.+ |..+..+++|++|
T Consensus 54 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 131 (192)
T 1w8a_A 54 PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSL 131 (192)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEE
T ss_pred CCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEE
Confidence 35666666654322222455555666666666654 244443322 22346666666653 34433 4445555666666
Q ss_pred eecCC
Q 019416 283 SVSGC 287 (341)
Q Consensus 283 ~l~~c 287 (341)
+++++
T Consensus 132 ~L~~N 136 (192)
T 1w8a_A 132 NLASN 136 (192)
T ss_dssp ECTTC
T ss_pred EeCCC
Confidence 66553
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.44 E-value=2.7e-06 Score=68.81 Aligned_cols=121 Identities=25% Similarity=0.257 Sum_probs=79.8
Q ss_pred cceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCC-CCCCCcceEecccCcccccchh-hhccCCCcCeEee
Q 019416 207 LRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGG-LPNTSLTSLLISECENLMSLPH-QIHKATSLQDLSV 284 (341)
Q Consensus 207 L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~-~~~~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l 284 (341)
.+.+++.+ ..+..+|..+ .++|+.|+++++. +..++... ..+++|++|+++++ .++.++. .+..+++|++|++
T Consensus 9 ~~~l~~~~-~~l~~~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 9 GTEIRCNS-KGLTSVPTGI--PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp TTEEECCS-SCCSSCCTTC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEecC-CCCccCCCCC--CCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEEC
Confidence 45566655 3455565443 3678888888854 55555533 23568888888875 5777765 3577888888888
Q ss_pred cCCCCCccCCCCC--CCCCccEEEeecCCCCCccccccccCCCceeEEEEeC
Q 019416 285 SGCPSLMSFPHGG--LPPNLISLGIIDCENLIPLSQWELHKLKHLNKYTILG 334 (341)
Q Consensus 285 ~~c~~l~~~~~~~--~~~~L~~L~l~~c~~~~~~~~~~i~~~~~L~~l~l~~ 334 (341)
+++ .++.++... ..++|++|+++++ .++..+...+..+++|+++++++
T Consensus 84 ~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~ 133 (177)
T 2o6r_A 84 HEN-KLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHT 133 (177)
T ss_dssp CSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCS
T ss_pred CCC-CccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecC
Confidence 774 566666542 3578888888876 34444433356778888888887
No 135
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.42 E-value=1.3e-07 Score=76.25 Aligned_cols=65 Identities=17% Similarity=0.298 Sum_probs=31.5
Q ss_pred ccCCCcCeEeecCCCCCccCCCCCC------CCCccEEEeecCCCCCc-cccccccCCCceeEEEEeCCCCCCC
Q 019416 274 HKATSLQDLSVSGCPSLMSFPHGGL------PPNLISLGIIDCENLIP-LSQWELHKLKHLNKYTILGGLPVLE 340 (341)
Q Consensus 274 ~~l~~L~~L~l~~c~~l~~~~~~~~------~~~L~~L~l~~c~~~~~-~~~~~i~~~~~L~~l~l~~~C~~l~ 340 (341)
..+++|++|++++|..+++.....+ .++|++|++++|.+++. +.. .+.++++|++|++++ |++++
T Consensus 82 ~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~L~~~~~L~~L~L~~-c~~It 153 (176)
T 3e4g_A 82 EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII-ALHHFRNLKYLFLSD-LPGVK 153 (176)
T ss_dssp TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-HGGGCTTCCEEEEES-CTTCC
T ss_pred cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-HHhcCCCCCEEECCC-CCCCC
Confidence 4455555555555555443221111 12456666666655551 111 234556666666666 65554
No 136
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.36 E-value=4.4e-07 Score=90.06 Aligned_cols=103 Identities=19% Similarity=0.198 Sum_probs=55.0
Q ss_pred ccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccchhhhccCCCcCeEeec
Q 019416 206 ELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQIHKATSLQDLSVS 285 (341)
Q Consensus 206 ~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~ 285 (341)
.|+.|+++++. +..+|..+..+++|+.|+++++ .+..+|.....+++|++|+++++ .++.+|..+..+++|++|+++
T Consensus 225 ~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~ 301 (727)
T 4b8c_D 225 LWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSCFQLKYFYFF 301 (727)
T ss_dssp CCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGGGTTCSEEECC
T ss_pred CCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCC-cCCccChhhcCCCCCCEEECC
Confidence 45666666543 3455555555566666666654 23444443333446666666654 355555555666666666665
Q ss_pred CCCCCccCCCC-CCCCCccEEEeecCCC
Q 019416 286 GCPSLMSFPHG-GLPPNLISLGIIDCEN 312 (341)
Q Consensus 286 ~c~~l~~~~~~-~~~~~L~~L~l~~c~~ 312 (341)
+| .+..+|.. +.+++|++|+++++..
T Consensus 302 ~N-~l~~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 302 DN-MVTTLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp SS-CCCCCCSSTTSCTTCCCEECTTSCC
T ss_pred CC-CCCccChhhhcCCCccEEeCCCCcc
Confidence 53 45555543 2345566666655543
No 137
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.26 E-value=1.1e-06 Score=87.12 Aligned_cols=81 Identities=25% Similarity=0.281 Sum_probs=57.3
Q ss_pred ccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccchhhhccCCCcCeEe
Q 019416 204 TLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQIHKATSLQDLS 283 (341)
Q Consensus 204 ~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~ 283 (341)
+++|+.|+++++ .+..+|..+..+++|+.|++++|. +..+|.....+++|++|+++++ .++.+|..+..+++|+.|+
T Consensus 246 l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~ 322 (727)
T 4b8c_D 246 YDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLG 322 (727)
T ss_dssp CCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEE
T ss_pred CCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCC-CCCccChhhhcCCCccEEe
Confidence 446777888775 445777777777788888887754 5566655444567888888775 5777777777778888888
Q ss_pred ecCC
Q 019416 284 VSGC 287 (341)
Q Consensus 284 l~~c 287 (341)
++++
T Consensus 323 L~~N 326 (727)
T 4b8c_D 323 VEGN 326 (727)
T ss_dssp CTTS
T ss_pred CCCC
Confidence 8764
No 138
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.22 E-value=9.4e-05 Score=67.72 Aligned_cols=58 Identities=5% Similarity=0.077 Sum_probs=39.6
Q ss_pred CCCCCCCcCeEEcCCCCCCccccc-cccCCCCccEEeccCC-CCchhh-hcccCCCCcceEeeec
Q 019416 35 GIRTGETLESLEIDNLSSLASFLR-SELAATTVKQLKINKC-PDLEVL-LHRMAYTSLEYLEFSS 96 (341)
Q Consensus 35 ~l~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~-~~l~~~-~~~~~l~~L~~L~l~~ 96 (341)
.|.++.+|+.+.+.. .++.++. ++.++.+|+.+++.+. ..+... +.. +.+|+.+.+..
T Consensus 66 AF~~c~~L~~i~lp~--~i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~--c~~L~~i~~p~ 126 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPS--TVREIGEFAFENCSKLEIINIPDSVKMIGRCTFSG--CYALKSILLPL 126 (394)
T ss_dssp TTTTCTTEEEEECCT--TCCEECTTTTTTCTTCCEECCCTTCCEECTTTTTT--CTTCCCCCCCT
T ss_pred HhhCCCCceEEEeCC--CccCcchhHhhCCCCCcEEEeCCCceEccchhhcc--cccchhhcccC
Confidence 477789999999974 4677754 4677899999999652 112222 666 77777776643
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.21 E-value=1.1e-05 Score=65.08 Aligned_cols=98 Identities=20% Similarity=0.277 Sum_probs=49.4
Q ss_pred ceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCC-CCCCCCcceEecccCcccccchhh-hccCCCcCeEeec
Q 019416 208 RELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEG-GLPNTSLTSLLISECENLMSLPHQ-IHKATSLQDLSVS 285 (341)
Q Consensus 208 ~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~L~l~~~~~l~~l~~~-l~~l~~L~~L~l~ 285 (341)
+.+++++ ..++.+|..+. +.|+.|+++++. +..++.. ...+++|++|+++++ +++.+|.. +..+++|+.|+++
T Consensus 15 ~~l~~~~-n~l~~iP~~~~--~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 15 TLVNCQN-IRLASVPAGIP--TDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SEEECCS-SCCSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred cEEEeCC-CCCCccCCCcC--CCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECC
Confidence 3444444 23445554442 556666666542 4434332 223446666666653 45555543 3556666666665
Q ss_pred CCCCCccCCCC--CCCCCccEEEeecCC
Q 019416 286 GCPSLMSFPHG--GLPPNLISLGIIDCE 311 (341)
Q Consensus 286 ~c~~l~~~~~~--~~~~~L~~L~l~~c~ 311 (341)
+ +.++.++.. ...++|++|++.+++
T Consensus 90 ~-N~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 90 D-NHLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp S-SCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred C-CccceeCHHHhccccCCCEEEeCCCC
Confidence 5 345555543 224566666666543
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.19 E-value=1.4e-05 Score=64.28 Aligned_cols=99 Identities=22% Similarity=0.252 Sum_probs=57.6
Q ss_pred cceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCC-CCCCCCcceEecccCcccccchhh-hccCCCcCeEee
Q 019416 207 LRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEG-GLPNTSLTSLLISECENLMSLPHQ-IHKATSLQDLSV 284 (341)
Q Consensus 207 L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~L~l~~~~~l~~l~~~-l~~l~~L~~L~l 284 (341)
.+.+++++ ..++.+|..+ .+.|+.|+++++ .+..++.. ...+++|++|+++++ +++.++.. +..+++|++|++
T Consensus 11 ~~~l~~s~-n~l~~ip~~~--~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 11 GTTVDCSG-KSLASVPTGI--PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp TTEEECTT-SCCSSCCSCC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEeCC-CCcCccCccC--CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEEC
Confidence 45666665 3455566544 256777777764 34444332 223457777777764 46666543 466777777777
Q ss_pred cCCCCCccCCCC--CCCCCccEEEeecCC
Q 019416 285 SGCPSLMSFPHG--GLPPNLISLGIIDCE 311 (341)
Q Consensus 285 ~~c~~l~~~~~~--~~~~~L~~L~l~~c~ 311 (341)
++ +.++.++.. ...++|++|++++++
T Consensus 86 ~~-N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 86 ND-NQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CS-SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CC-CccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 66 356666554 234667777776653
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.18 E-value=7.3e-06 Score=66.21 Aligned_cols=80 Identities=23% Similarity=0.314 Sum_probs=65.8
Q ss_pred ccceEeeccCcCCCcc-cccCCCCCCcCeEEeecCCCCceecCCC-CCCCCcceEecccCcccccchhh-hccCCCcCeE
Q 019416 206 ELRELEIWDCLELEFL-PEDMHNFTDLNLLSISNCPSLESFPEGG-LPNTSLTSLLISECENLMSLPHQ-IHKATSLQDL 282 (341)
Q Consensus 206 ~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~~~~~~-~~~~~L~~L~l~~~~~l~~l~~~-l~~l~~L~~L 282 (341)
+|+.|+++++. +..+ |..+..+++|+.|+++++ .+..++... ..+++|++|+++++ .++.+|.. +..+++|+.|
T Consensus 34 ~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L 110 (174)
T 2r9u_A 34 DKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN-HLKSIPRGAFDNLKSLTHI 110 (174)
T ss_dssp TCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEE
T ss_pred CCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC-ccceeCHHHhccccCCCEE
Confidence 59999999965 4444 678899999999999996 577777754 34679999999985 68888875 8899999999
Q ss_pred eecCCC
Q 019416 283 SVSGCP 288 (341)
Q Consensus 283 ~l~~c~ 288 (341)
++++++
T Consensus 111 ~L~~N~ 116 (174)
T 2r9u_A 111 YLYNNP 116 (174)
T ss_dssp ECCSSC
T ss_pred EeCCCC
Confidence 998853
No 142
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.13 E-value=1.7e-06 Score=69.70 Aligned_cols=10 Identities=0% Similarity=0.272 Sum_probs=4.6
Q ss_pred CccEEeccCC
Q 019416 65 TVKQLKINKC 74 (341)
Q Consensus 65 ~L~~L~l~~~ 74 (341)
+|++|++++|
T Consensus 62 ~L~~LDLs~~ 71 (176)
T 3e4g_A 62 KIQAIDATDS 71 (176)
T ss_dssp CEEEEEEESC
T ss_pred eEeEEeCcCC
Confidence 4444444444
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.13 E-value=1.1e-05 Score=64.80 Aligned_cols=80 Identities=26% Similarity=0.370 Sum_probs=65.1
Q ss_pred ccceEeeccCcCCCcc-cccCCCCCCcCeEEeecCCCCceecCCC-CCCCCcceEecccCcccccchh-hhccCCCcCeE
Q 019416 206 ELRELEIWDCLELEFL-PEDMHNFTDLNLLSISNCPSLESFPEGG-LPNTSLTSLLISECENLMSLPH-QIHKATSLQDL 282 (341)
Q Consensus 206 ~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~~~~~~-~~~~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L 282 (341)
+++.|+++++. +..+ |..+..+++|++|+++++ .++.++... ..+++|++|+++++ .++.++. .+..+++|+.|
T Consensus 31 ~l~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 107 (170)
T 3g39_A 31 TTQVLYLYDNQ-ITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRGAFDNLKSLTHI 107 (170)
T ss_dssp TCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCcEEEcCCCc-CCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCC-ccCEeCHHHhcCCCCCCEE
Confidence 59999999864 4555 677899999999999996 577777654 34679999999995 6888876 48899999999
Q ss_pred eecCCC
Q 019416 283 SVSGCP 288 (341)
Q Consensus 283 ~l~~c~ 288 (341)
++++++
T Consensus 108 ~L~~N~ 113 (170)
T 3g39_A 108 WLLNNP 113 (170)
T ss_dssp ECCSSC
T ss_pred EeCCCC
Confidence 998853
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.08 E-value=3.6e-08 Score=81.62 Aligned_cols=123 Identities=17% Similarity=0.166 Sum_probs=83.2
Q ss_pred cccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccchhhhccCCCcCeE
Q 019416 203 HTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQIHKATSLQDL 282 (341)
Q Consensus 203 ~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L 282 (341)
.+++|+.|+++++ .+..+| .+..+++|+.|++++|. +..++.....+++|++|+++++ .++.+| .+..+++|+.|
T Consensus 46 ~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~~~l~~L~~L 120 (198)
T 1ds9_A 46 TLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYN-QIASLS-GIEKLVNLRVL 120 (198)
T ss_dssp HTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HHHHHHHSSEE
T ss_pred cCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCC-cCCcCC-ccccCCCCCEE
Confidence 4557888988875 455566 77778889999998863 4455442222368899999885 577777 67788889999
Q ss_pred eecCCCCCccCCC---CCCCCCccEEEeecCCCCCccc---------cccccCCCceeEEE
Q 019416 283 SVSGCPSLMSFPH---GGLPPNLISLGIIDCENLIPLS---------QWELHKLKHLNKYT 331 (341)
Q Consensus 283 ~l~~c~~l~~~~~---~~~~~~L~~L~l~~c~~~~~~~---------~~~i~~~~~L~~l~ 331 (341)
+++++ .+..++. -...++|++|++.+++.....+ ...+..+++|+.|+
T Consensus 121 ~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 121 YMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred ECCCC-cCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 99874 5665443 1446789999998874322211 11256778888776
No 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.07 E-value=1.9e-08 Score=83.33 Aligned_cols=80 Identities=13% Similarity=0.048 Sum_probs=38.2
Q ss_pred CCCCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh---hcccCCCCcceEeeecCCCCccccCCCCCCCc
Q 019416 36 IRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL---LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTL 112 (341)
Q Consensus 36 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~---~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L 112 (341)
+..+++|++|++++| .++.+| .+..+++|+.|++++| .+..+ +.. +++|++|++++| .+..++....+++|
T Consensus 44 ~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~--~~~L~~L~L~~N-~l~~l~~~~~l~~L 117 (198)
T 1ds9_A 44 LSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAV--ADTLEELWISYN-QIASLSGIEKLVNL 117 (198)
T ss_dssp HHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHH--HHHCSEEEEEEE-ECCCHHHHHHHHHS
T ss_pred HhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCC-Ccccccchhhc--CCcCCEEECcCC-cCCcCCccccCCCC
Confidence 344555555555543 333344 3444555555555552 33332 333 455555555553 34334333334555
Q ss_pred cEEEEeCCC
Q 019416 113 KRLKICDCT 121 (341)
Q Consensus 113 ~~L~l~~~~ 121 (341)
++|++++|.
T Consensus 118 ~~L~l~~N~ 126 (198)
T 1ds9_A 118 RVLYMSNNK 126 (198)
T ss_dssp SEEEESEEE
T ss_pred CEEECCCCc
Confidence 555555543
No 146
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.97 E-value=0.0022 Score=58.54 Aligned_cols=78 Identities=13% Similarity=0.176 Sum_probs=47.4
Q ss_pred CCCCC-CcCeEEcCCCCCCccccc-cccCCCCccEEeccCC--CCchhh----hcccCCCCcceEeeecCCCCccccCCC
Q 019416 36 IRTGE-TLESLEIDNLSSLASFLR-SELAATTVKQLKINKC--PDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQDY 107 (341)
Q Consensus 36 l~~~~-~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~--~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~~~ 107 (341)
|.++. .|+.+.+.. .++.++. ++.++.+|+.+.+..+ ..+..+ |.. +.+|+.+.+.+ .+..++...
T Consensus 59 F~~~~~~L~sI~iP~--svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~--c~~L~~i~~~~--~~~~I~~~a 132 (394)
T 4gt6_A 59 FCNYKYVLTSVQIPD--TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMF--CSELTDIPILD--SVTEIDSEA 132 (394)
T ss_dssp TTTCCSCCCEEEECT--TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTT--CTTCCBCGGGT--TCSEECTTT
T ss_pred ccCCCCcCEEEEECC--CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchh--cccceeeccCC--ccceehhhh
Confidence 44553 488888864 4666644 4667888888887652 123332 666 77777776654 355555433
Q ss_pred C--CCCccEEEEeC
Q 019416 108 F--PTTLKRLKICD 119 (341)
Q Consensus 108 ~--~~~L~~L~l~~ 119 (341)
+ +.+|+.+.+..
T Consensus 133 F~~c~~L~~i~lp~ 146 (394)
T 4gt6_A 133 FHHCEELDTVTIPE 146 (394)
T ss_dssp TTTCTTCCEEECCT
T ss_pred hhhhcccccccccc
Confidence 3 56777777654
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.93 E-value=4.7e-05 Score=68.33 Aligned_cols=100 Identities=20% Similarity=0.114 Sum_probs=65.2
Q ss_pred eEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCC-CCCCCcceEecccCcccccchh-hhccCCCcCeEeecC
Q 019416 209 ELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGG-LPNTSLTSLLISECENLMSLPH-QIHKATSLQDLSVSG 286 (341)
Q Consensus 209 ~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~-~~~~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~ 286 (341)
.++.++.+.+..+|. +..+++|+.|++++++.+..++... ..+++|++|+++++ .++.++. .+..+++|+.|++++
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCC
Confidence 345555335667777 7777778888887645566666432 23568888888875 5766654 567788888888876
Q ss_pred CCCCccCCCCCC-CCCccEEEeecCC
Q 019416 287 CPSLMSFPHGGL-PPNLISLGIIDCE 311 (341)
Q Consensus 287 c~~l~~~~~~~~-~~~L~~L~l~~c~ 311 (341)
+.+..++...+ ...|+.|++.+++
T Consensus 90 -N~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 90 -NALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp -SCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred -CccceeCHHHcccCCceEEEeeCCC
Confidence 46677765432 2248888887654
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.90 E-value=0.00078 Score=61.53 Aligned_cols=37 Identities=16% Similarity=0.183 Sum_probs=26.0
Q ss_pred CCCCCCCcCeEEcCCCCCCccccc-cccCCCCccEEeccC
Q 019416 35 GIRTGETLESLEIDNLSSLASFLR-SELAATTVKQLKINK 73 (341)
Q Consensus 35 ~l~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~ 73 (341)
.|.+|.+|+.+++.+ .++.++. .+.++.+|+.+.+..
T Consensus 89 aF~~c~~L~~i~lp~--~l~~I~~~aF~~c~~L~~i~~p~ 126 (394)
T 4fs7_A 89 AFENCSKLEIINIPD--SVKMIGRCTFSGCYALKSILLPL 126 (394)
T ss_dssp TTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCCCCCCT
T ss_pred HhhCCCCCcEEEeCC--CceEccchhhcccccchhhcccC
Confidence 467799999999974 3566644 366677787766643
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.86 E-value=4e-05 Score=68.81 Aligned_cols=82 Identities=21% Similarity=0.223 Sum_probs=64.5
Q ss_pred CCCCCCcCeEEcCCCCCCcccc-ccccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccCCCC-C
Q 019416 36 IRTGETLESLEIDNLSSLASFL-RSELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQDYF-P 109 (341)
Q Consensus 36 l~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~~~~-~ 109 (341)
+..+.+|++|+|++++.++.++ ..+.++++|+.|+|++ +.+..+ |.. +++|++|++++| .+..++...+ .
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~--l~~L~~L~l~~N-~l~~~~~~~~~~ 102 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK-SGLRFVAPDAFHF--TPRLSRLNLSFN-ALESLSWKTVQG 102 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCS-SCCCEECTTGGGS--CSCCCEEECCSS-CCSCCCSTTTCS
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCC-CccceeCHHHhcC--CcCCCEEeCCCC-ccceeCHHHccc
Confidence 7788899999999645677776 4578899999999999 466665 788 999999999985 6777765333 2
Q ss_pred CCccEEEEeCCC
Q 019416 110 TTLKRLKICDCT 121 (341)
Q Consensus 110 ~~L~~L~l~~~~ 121 (341)
..|+.|++.+|.
T Consensus 103 ~~L~~l~l~~N~ 114 (347)
T 2ifg_A 103 LSLQELVLSGNP 114 (347)
T ss_dssp CCCCEEECCSSC
T ss_pred CCceEEEeeCCC
Confidence 339999999876
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.85 E-value=2.1e-05 Score=71.29 Aligned_cols=81 Identities=15% Similarity=0.083 Sum_probs=45.9
Q ss_pred ccCCCCccEEeccCCCC------------chhhhcccCCCCcceEeeecCCCCccccCCCCCCCccEEEEeCCCChHHHH
Q 019416 60 ELAATTVKQLKINKCPD------------LEVLLHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLKRLKICDCTNAELIL 127 (341)
Q Consensus 60 ~~~l~~L~~L~l~~~~~------------l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~ 127 (341)
...+++|+.|.+.+... +..++.. +++|+.|+++++..+ .++... .++|++|.+..|.......
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~--~P~L~~L~L~g~~~l-~l~~~~-~~~L~~L~L~~~~l~~~~l 210 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDA--MPLLNNLKIKGTNNL-SIGKKP-RPNLKSLEIISGGLPDSVV 210 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHT--CTTCCEEEEECCBTC-BCCSCB-CTTCSEEEEECSBCCHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhc--CCCCcEEEEeCCCCc-eecccc-CCCCcEEEEecCCCChHHH
Confidence 34567888888754211 2222677 889999999876323 233322 6788999888776433211
Q ss_pred HHhhhhcccccceEeec
Q 019416 128 KVLMDQKGLALESLEVD 144 (341)
Q Consensus 128 ~~~~~~~~~~L~~L~l~ 144 (341)
..+...-.|+|+.|++.
T Consensus 211 ~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 211 EDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHHHSBCTTCCEEEEE
T ss_pred HHHHHccCCCCcEEEEe
Confidence 11111001677777664
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.80 E-value=0.0051 Score=55.65 Aligned_cols=75 Identities=8% Similarity=0.116 Sum_probs=39.2
Q ss_pred CCCCCCcCeEEcCCCCCCccccc-cccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccCCCC-C
Q 019416 36 IRTGETLESLEIDNLSSLASFLR-SELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQDYF-P 109 (341)
Q Consensus 36 l~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~~~~-~ 109 (341)
+....+|+.+.+. ..++.++. ++.++.+|+++.+.. .+..+ |.. + +|+.+.+.. .+..++...+ .
T Consensus 42 ~~~~~~i~~v~ip--~~vt~Ig~~aF~~C~~L~~I~lp~--~v~~Ig~~aF~~--c-~l~~i~~~~--~l~~I~~~aF~~ 112 (379)
T 4h09_A 42 YKDRDRISEVRVN--SGITSIGEANFNSCYNMTKVTVAS--TVTSIGDGAFAD--T-KLQSYTGME--RVKKFGDYVFQG 112 (379)
T ss_dssp GGGGGGCSEEEEC--TTEEEECTTTTTTCTTCCEEEECT--TCCEECTTTTTT--C-CCCEEEECT--TCCEECTTTTTT
T ss_pred cccccCCEEEEeC--CCccChHHHHhhCCCCCCEEEeCC--cceEechhhhcC--C-CCceEECCc--eeeEeccceecc
Confidence 3345566777765 35566644 355667777777753 12222 444 4 456555543 3444444333 2
Q ss_pred CCccEEEEeC
Q 019416 110 TTLKRLKICD 119 (341)
Q Consensus 110 ~~L~~L~l~~ 119 (341)
.+|+.+.+.+
T Consensus 113 ~~L~~i~lp~ 122 (379)
T 4h09_A 113 TDLDDFEFPG 122 (379)
T ss_dssp CCCSEEECCT
T ss_pred CCcccccCCC
Confidence 3566666544
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.76 E-value=9.1e-05 Score=67.02 Aligned_cols=127 Identities=17% Similarity=0.187 Sum_probs=80.6
Q ss_pred CCCCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh------hcccCCCCcceEeeecCCC-------Ccc
Q 019416 36 IRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL------LHRMAYTSLEYLEFSSCLF-------FSN 102 (341)
Q Consensus 36 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~------~~~~~l~~L~~L~l~~~~~-------l~~ 102 (341)
+..+|+|+.|.|+++... .++. + ..++|+.|.+..|. +... ... +++|+.|+++.+.. +..
T Consensus 168 l~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~-l~~~~l~~l~~~~--lp~L~~L~L~~~~~~~~~~~~~~~ 241 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGG-LPDSVVEDILGSD--LPNLEKLVLYVGVEDYGFDGDMNV 241 (362)
T ss_dssp HHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSB-CCHHHHHHHHHSB--CTTCCEEEEECBCGGGTCCSCGGG
T ss_pred HhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCC-CChHHHHHHHHcc--CCCCcEEEEeccccccccchhHHH
Confidence 356899999999887433 2332 2 37899999998754 3222 346 99999999863211 111
Q ss_pred cc---CCCCCCCccEEEEeCCCChHHHHHHhhhhcc-cccceEeecCCCCccc-----cCCC-CCccccceEEeecc
Q 019416 103 SK---QDYFPTTLKRLKICDCTNAELILKVLMDQKG-LALESLEVDGCSSLFS-----LPIN-QLPATLRHLRIVNC 169 (341)
Q Consensus 103 ~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~-----l~~~-~~~~~L~~L~l~~~ 169 (341)
+. ....+++|++|.+.+|.........+..... ++|++|+++. +.++. +..+ ..+++|++|++++|
T Consensus 242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 11 1224799999999998855431111222111 8999999976 56655 2222 34578999999876
No 153
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.65 E-value=7.2e-06 Score=74.68 Aligned_cols=78 Identities=9% Similarity=0.159 Sum_probs=37.3
Q ss_pred CCCcCeEEcCCCCCCccc-cccc----c-CCCCccEEeccCCCCchhh-----hcccCCCCcceEeeecCCCCccccCC-
Q 019416 39 GETLESLEIDNLSSLASF-LRSE----L-AATTVKQLKINKCPDLEVL-----LHRMAYTSLEYLEFSSCLFFSNSKQD- 106 (341)
Q Consensus 39 ~~~L~~L~l~~~~~~~~~-~~~~----~-~l~~L~~L~l~~~~~l~~~-----~~~~~l~~L~~L~l~~~~~l~~~~~~- 106 (341)
++.|++|++++|. ++.. ...+ . ..++|++|++++| .+.+. ... +++|+.|++++| .+......
T Consensus 71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~--L~~L~~L~Ls~n-~l~~~~~~~ 145 (372)
T 3un9_A 71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPV--FLRARKLGLQLN-SLGPEACKD 145 (372)
T ss_dssp HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHH--HHTEEEEECCSS-CCCHHHHHH
T ss_pred HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHH--HHhccHhhcCCC-CCCHHHHHH
Confidence 4556677776653 2221 1111 1 1246666777664 33221 344 556666666664 33222110
Q ss_pred ------CCCCCccEEEEeCCC
Q 019416 107 ------YFPTTLKRLKICDCT 121 (341)
Q Consensus 107 ------~~~~~L~~L~l~~~~ 121 (341)
...++|++|++++|.
T Consensus 146 L~~~L~~~~~~L~~L~Ls~n~ 166 (372)
T 3un9_A 146 LRDLLLHDQCQITTLRLSNNP 166 (372)
T ss_dssp HHHHHHSTTCCCCEEECCSSC
T ss_pred HHHHHHhcCCccceeeCCCCC
Confidence 123556666666664
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.42 E-value=0.023 Score=51.64 Aligned_cols=104 Identities=14% Similarity=0.249 Sum_probs=77.1
Q ss_pred ccCCCCCCcCeEEeecCCCCceecCCCC-CCCCcceEecccCcccccchh-hhccCCCcCeEeecCCCCCccCCCCCC--
Q 019416 223 EDMHNFTDLNLLSISNCPSLESFPEGGL-PNTSLTSLLISECENLMSLPH-QIHKATSLQDLSVSGCPSLMSFPHGGL-- 298 (341)
Q Consensus 223 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~-~~~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~~~~~~~-- 298 (341)
..|..+..|+.+.+.+ .+..+....+ .+++|+.+.+.. .++.++. .+..+.+|+.+.+.+ .++.++...|
T Consensus 259 ~aF~~c~~L~~i~lp~--~~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~ 332 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPD--SVVSIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GITQILDDAFAG 332 (394)
T ss_dssp TTTTTCSSCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTT
T ss_pred ceeeecccccEEeccc--ccceecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCC--cccEehHhHhhC
Confidence 4567788899888864 3444544332 346899998874 5777765 678899999999964 5888887755
Q ss_pred CCCccEEEeecCCCCCccccccccCCCceeEEEEeC
Q 019416 299 PPNLISLGIIDCENLIPLSQWELHKLKHLNKYTILG 334 (341)
Q Consensus 299 ~~~L~~L~l~~c~~~~~~~~~~i~~~~~L~~l~l~~ 334 (341)
..+|+.+.+.. .++.....++..+++|+.+++.+
T Consensus 333 C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 333 CEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp CTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESS
T ss_pred CCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECC
Confidence 47899999964 36655555789999999999876
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.13 E-value=0.00098 Score=54.09 Aligned_cols=108 Identities=18% Similarity=0.101 Sum_probs=63.6
Q ss_pred CCCCCCCcCeEEcCCCCCCcc-----ccccccCCCCccEEeccCCCCchhh--------hcccCCCCcceEeeecCCCCc
Q 019416 35 GIRTGETLESLEIDNLSSLAS-----FLRSELAATTVKQLKINKCPDLEVL--------LHRMAYTSLEYLEFSSCLFFS 101 (341)
Q Consensus 35 ~l~~~~~L~~L~l~~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~l~~~--------~~~~~l~~L~~L~l~~~~~l~ 101 (341)
.+...+.|++|++++|..+.. +...+...++|++|++++| .+.+. +.. .++|++|++++| .+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~--n~~L~~L~L~~N-~i~ 106 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKV--NNTLKSLNVESN-FIS 106 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHH--CSSCCEEECCSS-CCC
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHh--CCCcCEEECcCC-cCC
Confidence 456788899999988723332 2223445688999999885 44332 555 678888888875 443
Q ss_pred ccc------CCCCCCCccEEEE--eCCCChHHHHHHhhhhcc--cccceEeecCC
Q 019416 102 NSK------QDYFPTTLKRLKI--CDCTNAELILKVLMDQKG--LALESLEVDGC 146 (341)
Q Consensus 102 ~~~------~~~~~~~L~~L~l--~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~ 146 (341)
.-. .....++|++|++ ++|..-..-...+...+. ++|++|+++++
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 321 1223567888888 666533221111222222 67777777653
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.85 E-value=0.00067 Score=58.41 Aligned_cols=59 Identities=14% Similarity=0.137 Sum_probs=38.6
Q ss_pred CCCCccEEeccCCCCchhh------hcccCCCCcceEeeecCCCCccccCCCCCC--CccEEEEeCCCChH
Q 019416 62 AATTVKQLKINKCPDLEVL------LHRMAYTSLEYLEFSSCLFFSNSKQDYFPT--TLKRLKICDCTNAE 124 (341)
Q Consensus 62 ~l~~L~~L~l~~~~~l~~~------~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~--~L~~L~l~~~~~~~ 124 (341)
.+++|+.|+|++ +.+..+ +.. +++|+.|+++++ .+..+.....+. +|+.|.+.+|+...
T Consensus 168 ~l~~L~~L~Ls~-N~l~~l~~l~~~~~~--l~~L~~L~Ls~N-~i~~~~~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 168 NIPELLSLNLSN-NRLYRLDDMSSIVQK--APNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp HCTTCCEEECTT-SCCCCCGGGTTHHHH--STTCCEEECTTS-CCCSGGGGGGGTTSCCSEEECTTSTTGG
T ss_pred hCCCCCEEECCC-CCCCCCccchhHHhh--CCCCCEEECCCC-ccCCchhhhhcccCCcceEEccCCcCcc
Confidence 467888888887 445442 457 888888888774 555543333333 78888888887543
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.83 E-value=0.22 Score=44.70 Aligned_cols=73 Identities=12% Similarity=0.207 Sum_probs=43.0
Q ss_pred CCCCCCCcCeEEcCCCCCCcccccc-ccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccCCCC-
Q 019416 35 GIRTGETLESLEIDNLSSLASFLRS-ELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQDYF- 108 (341)
Q Consensus 35 ~l~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~~~~- 108 (341)
.|.+|.+|+.+++.. .++.++.. +..+ +|+.+.+.. .+..+ +.. .+|+.+.+.+ .+..+....+
T Consensus 64 aF~~C~~L~~I~lp~--~v~~Ig~~aF~~c-~l~~i~~~~--~l~~I~~~aF~~---~~L~~i~lp~--~~~~i~~~~F~ 133 (379)
T 4h09_A 64 NFNSCYNMTKVTVAS--TVTSIGDGAFADT-KLQSYTGME--RVKKFGDYVFQG---TDLDDFEFPG--ATTEIGNYIFY 133 (379)
T ss_dssp TTTTCTTCCEEEECT--TCCEECTTTTTTC-CCCEEEECT--TCCEECTTTTTT---CCCSEEECCT--TCCEECTTTTT
T ss_pred HhhCCCCCCEEEeCC--cceEechhhhcCC-CCceEECCc--eeeEeccceecc---CCcccccCCC--ccccccccccc
Confidence 477899999999974 46677553 4444 677777654 23333 444 3788888864 3444433222
Q ss_pred CCCccEEEE
Q 019416 109 PTTLKRLKI 117 (341)
Q Consensus 109 ~~~L~~L~l 117 (341)
-.+++...+
T Consensus 134 ~~~l~~~~~ 142 (379)
T 4h09_A 134 NSSVKRIVI 142 (379)
T ss_dssp TCCCCEEEE
T ss_pred cceeeeeec
Confidence 223444444
No 158
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=96.76 E-value=0.0017 Score=58.91 Aligned_cols=127 Identities=15% Similarity=0.060 Sum_probs=82.7
Q ss_pred CCCcCeEEcCCCCCCcccccc-ccCCCCccEEeccCCCCchhh----h-----cccCCCCcceEeeecCCCCccccC---
Q 019416 39 GETLESLEIDNLSSLASFLRS-ELAATTVKQLKINKCPDLEVL----L-----HRMAYTSLEYLEFSSCLFFSNSKQ--- 105 (341)
Q Consensus 39 ~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~----~-----~~~~l~~L~~L~l~~~~~l~~~~~--- 105 (341)
.++|++|++++|.....-... ...+++|++|++++| .+.+. + .. .++|++|++++| .+.....
T Consensus 100 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L~~~--~~~L~~L~Ls~n-~l~~~~~~~l 175 (372)
T 3un9_A 100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLLLHD--QCQITTLRLSNN-PLTAAGVAVL 175 (372)
T ss_dssp SSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHHHST--TCCCCEEECCSS-CCHHHHHHHH
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHHHhc--CCccceeeCCCC-CCChHHHHHH
Confidence 479999999997532211111 234679999999996 55433 2 45 689999999987 4543211
Q ss_pred ---CCCCCCccEEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCCC------CCccccceEEeeccC
Q 019416 106 ---DYFPTTLKRLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPIN------QLPATLRHLRIVNCM 170 (341)
Q Consensus 106 ---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~------~~~~~L~~L~l~~~~ 170 (341)
....++|++|++++|.....-...++..+. ++|++|++++| .++..... ...++|++|+++++.
T Consensus 176 ~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 176 MEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred HHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 134688999999999743321112344443 79999999985 55542211 234689999999864
No 159
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.13 E-value=0.0053 Score=49.67 Aligned_cols=106 Identities=13% Similarity=0.059 Sum_probs=68.9
Q ss_pred ccCCCCccEEeccCCCCchhh--------hcccCCCCcceEeeecCCCCccccC------CCCCCCccEEEEeCCCChHH
Q 019416 60 ELAATTVKQLKINKCPDLEVL--------LHRMAYTSLEYLEFSSCLFFSNSKQ------DYFPTTLKRLKICDCTNAEL 125 (341)
Q Consensus 60 ~~~l~~L~~L~l~~~~~l~~~--------~~~~~l~~L~~L~l~~~~~l~~~~~------~~~~~~L~~L~l~~~~~~~~ 125 (341)
....++|++|++++|..+.+. +.. .++|++|++++| .+..-.. ....++|++|++++|..-..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~--~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKT--NTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTT--CCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHh--CCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 445689999999996355432 667 889999999986 4443211 12257899999999974433
Q ss_pred HHHHhhhhcc--cccceEee--cCCCCccccCC-----C-CCccccceEEeecc
Q 019416 126 ILKVLMDQKG--LALESLEV--DGCSSLFSLPI-----N-QLPATLRHLRIVNC 169 (341)
Q Consensus 126 ~~~~~~~~~~--~~L~~L~l--~~~~~l~~l~~-----~-~~~~~L~~L~l~~~ 169 (341)
-...+...+. ++|++|++ .+ +.++.-.. . ...++|++|+++++
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 1112344444 88999999 55 45543211 1 22367999999875
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.93 E-value=0.0042 Score=53.39 Aligned_cols=60 Identities=20% Similarity=0.080 Sum_probs=37.7
Q ss_pred hcccCCCCcceEeeecCCCCccccCCC----CCCCccEEEEeCCCChHHHHHHhhhhcc--c--ccceEeecCCCCc
Q 019416 81 LHRMAYTSLEYLEFSSCLFFSNSKQDY----FPTTLKRLKICDCTNAELILKVLMDQKG--L--ALESLEVDGCSSL 149 (341)
Q Consensus 81 ~~~~~l~~L~~L~l~~~~~l~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~--~L~~L~l~~~~~l 149 (341)
... +++|+.|++++| .+..++... .+++|+.|++++|. +.. +.. +. . +|++|++++++--
T Consensus 166 ~~~--l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~----~~~-l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 166 EEN--IPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNE-LKS----ERE-LDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HHH--CTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSC-CCS----GGG-GGGGTTSCCSEEECTTSTTG
T ss_pred Hhh--CCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCc-cCC----chh-hhhcccCCcceEEccCCcCc
Confidence 356 788888888875 555554322 37888888888875 333 211 11 3 7888888875533
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=89.54 E-value=0.51 Score=38.27 Aligned_cols=81 Identities=11% Similarity=0.241 Sum_probs=45.6
Q ss_pred CCCCCCcCeEEcCCCCCCcc-----ccccccCCCCccEEeccCCCCchhh--------hcccCCCCcceEeeecCCCCcc
Q 019416 36 IRTGETLESLEIDNLSSLAS-----FLRSELAATTVKQLKINKCPDLEVL--------LHRMAYTSLEYLEFSSCLFFSN 102 (341)
Q Consensus 36 l~~~~~L~~L~l~~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~l~~~--------~~~~~l~~L~~L~l~~~~~l~~ 102 (341)
+..-+.|+.|+|+++..+.. +......-..|+.|+|++| .+.+. +.. -+.|+.|+++++ .+..
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~--N~tL~~L~L~~N-~Ig~ 112 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIET--SPSLRVLNVESN-FLTP 112 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHH--CSSCCEEECCSS-BCCH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhc--CCccCeEecCCC-cCCH
Confidence 44567788888876423321 1122333467888888774 44433 445 667788888764 4433
Q ss_pred ccC------CCCCCCccEEEEeCC
Q 019416 103 SKQ------DYFPTTLKRLKICDC 120 (341)
Q Consensus 103 ~~~------~~~~~~L~~L~l~~~ 120 (341)
-.. ...-+.|++|+++++
T Consensus 113 ~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 113 ELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHHHHhhCCceeEEECCCC
Confidence 221 122355777777654
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=84.74 E-value=2.1 Score=34.65 Aligned_cols=79 Identities=15% Similarity=0.170 Sum_probs=42.2
Q ss_pred CCccEEeccCCCCchhh--------hcccCCCCcceEeeecCCCCccccCCC------CCCCccEEEEeCCCChHHHHHH
Q 019416 64 TTVKQLKINKCPDLEVL--------LHRMAYTSLEYLEFSSCLFFSNSKQDY------FPTTLKRLKICDCTNAELILKV 129 (341)
Q Consensus 64 ~~L~~L~l~~~~~l~~~--------~~~~~l~~L~~L~l~~~~~l~~~~~~~------~~~~L~~L~l~~~~~~~~~~~~ 129 (341)
+.|++|++++++.+.+. +.. -..|+.|++++| .+....... .-+.|++|++++|..-..-...
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~--N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACN--SKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTT--CSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhh--CCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 67888888764344332 555 667788888765 443332111 1366777777776532221111
Q ss_pred hhhhcc--cccceEeecC
Q 019416 130 LMDQKG--LALESLEVDG 145 (341)
Q Consensus 130 ~~~~~~--~~L~~L~l~~ 145 (341)
+.+.+. .+|++|++++
T Consensus 118 la~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHTTTTCCCSEEECCC
T ss_pred HHHHHhhCCceeEEECCC
Confidence 222222 5666666654
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=84.63 E-value=1.6 Score=32.56 Aligned_cols=41 Identities=22% Similarity=0.298 Sum_probs=21.5
Q ss_pred cccccCCCCCCcCeEEeecCCCCceecCCCC-CCCCcceEecccC
Q 019416 220 FLPEDMHNFTDLNLLSISNCPSLESFPEGGL-PNTSLTSLLISEC 263 (341)
Q Consensus 220 ~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~-~~~~L~~L~l~~~ 263 (341)
.+|..+ .++|+.|+++++ .+..++...+ .+++|++|++.++
T Consensus 24 ~vP~~l--p~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 24 SLPTAF--PVDTTELVLTGN-NLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TSCSCC--CTTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSS
T ss_pred cCCCCC--CcCCCEEECCCC-cCCccChhhhhhccccCEEEecCC
Confidence 555433 235666666663 3555555432 2346666666654
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=83.43 E-value=1.6 Score=32.54 Aligned_cols=8 Identities=13% Similarity=0.264 Sum_probs=3.3
Q ss_pred ccEEeccC
Q 019416 66 VKQLKINK 73 (341)
Q Consensus 66 L~~L~l~~ 73 (341)
|+.|+|++
T Consensus 33 l~~L~Ls~ 40 (130)
T 3rfe_A 33 TTELVLTG 40 (130)
T ss_dssp CSEEECTT
T ss_pred CCEEECCC
Confidence 44444443
Done!