BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019418
(341 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O22315|SRSF1_ARATH Pre-mRNA-splicing factor SF2 OS=Arabidopsis thaliana GN=SF2 PE=1
SV=1
Length = 303
Score = 243 bits (619), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 140/269 (52%), Positives = 161/269 (59%), Gaps = 74/269 (27%)
Query: 1 MSSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAED 60
MSSRSSRT+YVGNLPGD R REVEDLF KYGP+V IDLK+PPRPPGYAF+EF+D RDAED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 61 AIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGV---------SRRSDYR 111
AI GRDGY+FDG+RLRVELAHGGRR S + G SRRS++R
Sbjct: 61 AIHGRDGYDFDGHRLRVELAHGGRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEFR 120
Query: 112 VLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRI 171
VLVTGLPSSASWQDLKDHMR+ GG+V + ++ R
Sbjct: 121 VLVTGLPSSASWQDLKDHMRK------------------------GGDVCFSQVYRDAR- 155
Query: 172 LGGGMFSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKL 231
G TG+VDYT Y+DMKYA++KL
Sbjct: 156 ---------------------------------------GTTGVVDYTCYEDMKYALKKL 176
Query: 232 DRSEFRNAFSRSYVRVREYDSRRSYSRSP 260
D +EFRNAFS YVRVREYDSR+ SRSP
Sbjct: 177 DDTEFRNAFSNGYVRVREYDSRKD-SRSP 204
>sp|Q5ZML3|SRSF1_CHICK Serine/arginine-rich splicing factor 1 OS=Gallus gallus GN=SRSF1
PE=1 SV=3
Length = 257
Score = 150 bits (380), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 81/138 (58%), Positives = 97/138 (70%), Gaps = 2/138 (1%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNLP D R +++ED+FYKYG I DIDLK P +AF+EFED RDAEDA+ GRDGY
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 69 NFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGV--SRRSDYRVLVTGLPSSASWQDL 126
++DGYRLRVE GR + R SRRS+YRV+V+GLP S SWQDL
Sbjct: 78 DYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDL 137
Query: 127 KDHMRRAGDVCFSQVFRD 144
KDHMR AGDVC++ VFRD
Sbjct: 138 KDHMREAGDVCYADVFRD 155
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 14/79 (17%)
Query: 200 HFRES----YHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRVREYDSRR 254
H RE+ Y ++F TG+V++ +DM YA+RKLD ++FR + +Y+RV+
Sbjct: 140 HMREAGDVCYADVFRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK------ 193
Query: 255 SYSRSPSRSPYYSRSRSRS 273
RSP Y RSRSRS
Sbjct: 194 ---VDGPRSPSYGRSRSRS 209
>sp|Q6NYA0|SRS1B_DANRE Serine/arginine-rich splicing factor 1B OS=Danio rerio GN=srsf1b
PE=2 SV=1
Length = 245
Score = 149 bits (376), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 82/138 (59%), Positives = 97/138 (70%), Gaps = 2/138 (1%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNLP D R ++VED+FYKYG I DIDLK P +AF+EFED RDAEDA+ GRDGY
Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 76
Query: 69 NFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSR--GVSRRSDYRVLVTGLPSSASWQDL 126
++DGYRLRVE GR + R SRRS+YRV+V+GLP S SWQDL
Sbjct: 77 DYDGYRLRVEFPRSGRGGGRGGGGGGGVGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDL 136
Query: 127 KDHMRRAGDVCFSQVFRD 144
KDHMR AGDVC++ VFRD
Sbjct: 137 KDHMREAGDVCYADVFRD 154
Score = 39.3 bits (90), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 5/54 (9%)
Query: 200 HFRESYH----NIFAGMTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRVR 248
H RE+ ++F TG+V++ +DM YA+RKLD ++FR + +Y+RV+
Sbjct: 139 HMREAGDVCYADVFRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 192
>sp|Q5R7H2|SRSF1_PONAB Serine/arginine-rich splicing factor 1 OS=Pongo abelii GN=SRSF1
PE=2 SV=3
Length = 248
Score = 144 bits (364), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 79/138 (57%), Positives = 96/138 (69%), Gaps = 2/138 (1%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNLP D R +++ED+FYKYG I DIDLK P +AF+EFED RDAEDA+ GRDGY
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 69 NFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGV--SRRSDYRVLVTGLPSSASWQDL 126
++DGYRLRVE GR + R SRRS+ RV+V+GLP S SWQDL
Sbjct: 78 DYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDL 137
Query: 127 KDHMRRAGDVCFSQVFRD 144
KDHMR AGDVC++ V+RD
Sbjct: 138 KDHMREAGDVCYADVYRD 155
Score = 39.3 bits (90), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 5/54 (9%)
Query: 200 HFRESYHNIFAGM----TGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRVR 248
H RE+ +A + TG+V++ +DM YA+RKLD ++FR + +Y+RV+
Sbjct: 140 HMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 193
>sp|Q3YLA6|SRSF1_PIG Serine/arginine-rich splicing factor 1 OS=Sus scrofa GN=SRSF1 PE=2
SV=3
Length = 248
Score = 144 bits (364), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 79/138 (57%), Positives = 96/138 (69%), Gaps = 2/138 (1%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNLP D R +++ED+FYKYG I DIDLK P +AF+EFED RDAEDA+ GRDGY
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 69 NFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGV--SRRSDYRVLVTGLPSSASWQDL 126
++DGYRLRVE GR + R SRRS+ RV+V+GLP S SWQDL
Sbjct: 78 DYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDL 137
Query: 127 KDHMRRAGDVCFSQVFRD 144
KDHMR AGDVC++ V+RD
Sbjct: 138 KDHMREAGDVCYADVYRD 155
Score = 39.3 bits (90), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 5/54 (9%)
Query: 200 HFRESYHNIFAGM----TGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRVR 248
H RE+ +A + TG+V++ +DM YA+RKLD ++FR + +Y+RV+
Sbjct: 140 HMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 193
>sp|Q6PDM2|SRSF1_MOUSE Serine/arginine-rich splicing factor 1 OS=Mus musculus GN=Srsf1
PE=1 SV=3
Length = 248
Score = 144 bits (364), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 79/138 (57%), Positives = 96/138 (69%), Gaps = 2/138 (1%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNLP D R +++ED+FYKYG I DIDLK P +AF+EFED RDAEDA+ GRDGY
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 69 NFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGV--SRRSDYRVLVTGLPSSASWQDL 126
++DGYRLRVE GR + R SRRS+ RV+V+GLP S SWQDL
Sbjct: 78 DYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDL 137
Query: 127 KDHMRRAGDVCFSQVFRD 144
KDHMR AGDVC++ V+RD
Sbjct: 138 KDHMREAGDVCYADVYRD 155
Score = 39.3 bits (90), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 5/54 (9%)
Query: 200 HFRESYHNIFAGM----TGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRVR 248
H RE+ +A + TG+V++ +DM YA+RKLD ++FR + +Y+RV+
Sbjct: 140 HMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 193
>sp|Q07955|SRSF1_HUMAN Serine/arginine-rich splicing factor 1 OS=Homo sapiens GN=SRSF1
PE=1 SV=2
Length = 248
Score = 144 bits (364), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 79/138 (57%), Positives = 96/138 (69%), Gaps = 2/138 (1%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNLP D R +++ED+FYKYG I DIDLK P +AF+EFED RDAEDA+ GRDGY
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 69 NFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGV--SRRSDYRVLVTGLPSSASWQDL 126
++DGYRLRVE GR + R SRRS+ RV+V+GLP S SWQDL
Sbjct: 78 DYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDL 137
Query: 127 KDHMRRAGDVCFSQVFRD 144
KDHMR AGDVC++ V+RD
Sbjct: 138 KDHMREAGDVCYADVYRD 155
Score = 39.3 bits (90), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 5/54 (9%)
Query: 200 HFRESYHNIFAGM----TGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRVR 248
H RE+ +A + TG+V++ +DM YA+RKLD ++FR + +Y+RV+
Sbjct: 140 HMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 193
>sp|Q0VCY7|SRSF1_BOVIN Serine/arginine-rich splicing factor 1 OS=Bos taurus GN=SRSF1 PE=2
SV=1
Length = 248
Score = 144 bits (364), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 79/138 (57%), Positives = 96/138 (69%), Gaps = 2/138 (1%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNLP D R +++ED+FYKYG I DIDLK P +AF+EFED RDAEDA+ GRDGY
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 69 NFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGV--SRRSDYRVLVTGLPSSASWQDL 126
++DGYRLRVE GR + R SRRS+ RV+V+GLP S SWQDL
Sbjct: 78 DYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDL 137
Query: 127 KDHMRRAGDVCFSQVFRD 144
KDHMR AGDVC++ V+RD
Sbjct: 138 KDHMREAGDVCYADVYRD 155
Score = 39.3 bits (90), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 5/54 (9%)
Query: 200 HFRESYHNIFAGM----TGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRVR 248
H RE+ +A + TG+V++ +DM YA+RKLD ++FR + +Y+RV+
Sbjct: 140 HMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 193
>sp|Q7SXP4|SRS1A_DANRE Serine/arginine-rich splicing factor 1A OS=Danio rerio GN=srsf1a
PE=2 SV=2
Length = 257
Score = 144 bits (364), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 83/148 (56%), Positives = 97/148 (65%), Gaps = 12/148 (8%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNLP D R ++VED+FYKYG I DIDLK P +AF+EFED RDAEDA+ RDGY
Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARDGY 76
Query: 69 NFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGV------------SRRSDYRVLVTG 116
++DGYRLRVE GR GG G SRRS+YRV+V+G
Sbjct: 77 DYDGYRLRVEFPRSGRGMGRGGFGGGGGGGGGGGGGGGGAPRGRYGPPSRRSEYRVIVSG 136
Query: 117 LPSSASWQDLKDHMRRAGDVCFSQVFRD 144
LP S SWQDLKDHMR AGDVC++ VFRD
Sbjct: 137 LPPSGSWQDLKDHMREAGDVCYADVFRD 164
Score = 39.3 bits (90), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 5/54 (9%)
Query: 200 HFRESYH----NIFAGMTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRVR 248
H RE+ ++F TG+V++ +DM YA+RKLD ++FR + +Y+RV+
Sbjct: 149 HMREAGDVCYADVFRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 202
>sp|Q6DII2|SRSF1_XENTR Serine/arginine-rich splicing factor 1 OS=Xenopus tropicalis
GN=srsf1 PE=2 SV=1
Length = 267
Score = 142 bits (357), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 84/157 (53%), Positives = 99/157 (63%), Gaps = 21/157 (13%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNLP D R +++ED+FYKYG I DIDLK P +AF+EFED RDAEDA+ GRDGY
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 69 NFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGS-----------------RG----VSRR 107
++DGYRLRVE GR GG RG SRR
Sbjct: 78 DYDGYRLRVEFPRSGRGAGGRGGGGGGGGGGGGGGGGGGGGGGGGGGGAPRGRYGPPSRR 137
Query: 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD 144
S+YRV+V+GLP S SWQDLKDHMR AGDVC++ VFRD
Sbjct: 138 SEYRVVVSGLPPSGSWQDLKDHMREAGDVCYADVFRD 174
Score = 39.7 bits (91), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 5/54 (9%)
Query: 200 HFRESYH----NIFAGMTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRVR 248
H RE+ ++F TG+V++ +DM YA+RKLD ++FR + +Y+RV+
Sbjct: 159 HMREAGDVCYADVFRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 212
>sp|Q9NEW6|RSP3_CAEEL Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis
elegans GN=rsp-3 PE=1 SV=2
Length = 258
Score = 135 bits (341), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 77/154 (50%), Positives = 94/154 (61%), Gaps = 17/154 (11%)
Query: 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRG 64
+ +YVGNLPGD R +EVED+F+KYG I +D+K R P +AF+EFED+RDAEDA+R
Sbjct: 7 EDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIK-SGRGPAFAFVEFEDHRDAEDAVRA 65
Query: 65 RDGYNFDGYRLRVE--------------LAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDY 110
RDGY FDG R+RVE L GG G RR+ Y
Sbjct: 66 RDGYEFDGRRIRVEFTRGVGPRGPGGRPLQDGGDHRGGDFRGGRGGGR--GGGPQRRTGY 123
Query: 111 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD 144
RV+V GLP + SWQDLKDHMR AGDVC++ V RD
Sbjct: 124 RVIVEGLPPTGSWQDLKDHMRDAGDVCYADVARD 157
Score = 45.1 bits (105), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 38/55 (69%), Gaps = 5/55 (9%)
Query: 200 HFRES----YHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRVRE 249
H R++ Y ++ TG+V++T Y+D+KYA+RKLD ++FR + +Y+RVRE
Sbjct: 142 HMRDAGDVCYADVARDGTGVVEFTRYEDVKYAVRKLDDTKFRSHEGETAYIRVRE 196
>sp|Q9D0B0|SRSF9_MOUSE Serine/arginine-rich splicing factor 9 OS=Mus musculus GN=Srsf9
PE=1 SV=1
Length = 222
Score = 133 bits (334), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/139 (53%), Positives = 94/139 (67%), Gaps = 12/139 (8%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNLP D R +++EDLFYKYG I +I+LK +AF+ FED RDAEDAI GR+GY
Sbjct: 17 IYVGNLPSDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 76
Query: 69 NFDGYRLRVEL--AHGGRRHSSSMDRYSSYSSGGSRGV-SRRSDYRVLVTGLPSSASWQD 125
++ RLRVE +GGR + G G +RRSD+RVLV+GLP S SWQD
Sbjct: 77 DYGQCRLRVEFPRTYGGR---------GGWPRGARNGPPTRRSDFRVLVSGLPPSGSWQD 127
Query: 126 LKDHMRRAGDVCFSQVFRD 144
LKDHMR AGDVC++ V +D
Sbjct: 128 LKDHMREAGDVCYADVQKD 146
Score = 38.1 bits (87), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 5/53 (9%)
Query: 200 HFRES----YHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRV 247
H RE+ Y ++ G+V+Y +DM+YA+RKLD ++FR + SY+RV
Sbjct: 131 HMREAGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTKFRSHEGETSYIRV 183
>sp|Q5PPI1|SRSF9_RAT Serine/arginine-rich splicing factor 9 OS=Rattus norvegicus
GN=Srsf9 PE=1 SV=1
Length = 221
Score = 132 bits (333), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 75/138 (54%), Positives = 93/138 (67%), Gaps = 10/138 (7%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNLP D R +++EDLFYKYG I +I+LK +AF+ FED RDAEDAI GR+GY
Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 75
Query: 69 NFDGYRLRVEL--AHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDL 126
++ RLRVE A+GGR R +RRSD+RVLV+GLP S SWQDL
Sbjct: 76 DYGQCRLRVEFPRAYGGRGGWPRASRNGP--------PTRRSDFRVLVSGLPPSGSWQDL 127
Query: 127 KDHMRRAGDVCFSQVFRD 144
KDHMR AGDVC++ V +D
Sbjct: 128 KDHMREAGDVCYADVQKD 145
Score = 38.1 bits (87), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 5/53 (9%)
Query: 200 HFRES----YHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRV 247
H RE+ Y ++ G+V+Y +DM+YA+RKLD ++FR + SY+RV
Sbjct: 130 HMREAGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTKFRSHEGETSYIRV 182
>sp|Q13242|SRSF9_HUMAN Serine/arginine-rich splicing factor 9 OS=Homo sapiens GN=SRSF9
PE=1 SV=1
Length = 221
Score = 127 bits (320), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 72/136 (52%), Positives = 91/136 (66%), Gaps = 6/136 (4%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNLP D R +++EDLFYKYG I +I+LK +AF+ FED RDAEDAI GR+GY
Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 75
Query: 69 NFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKD 128
++ RLRVE + R G + +RRSD+RVLV+GLP S SWQDLKD
Sbjct: 76 DYGQCRLRVEFPR------TYGGRGGWPRGGRNGPPTRRSDFRVLVSGLPPSGSWQDLKD 129
Query: 129 HMRRAGDVCFSQVFRD 144
HMR AGDVC++ V +D
Sbjct: 130 HMREAGDVCYADVQKD 145
Score = 38.1 bits (87), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 5/53 (9%)
Query: 200 HFRES----YHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRV 247
H RE+ Y ++ G+V+Y +DM+YA+RKLD ++FR + SY+RV
Sbjct: 130 HMREAGDVCYADVQKDGVGMVEYLRKEDMEYALRKLDDTKFRSHEGETSYIRV 182
>sp|Q8VE97|SRSF4_MOUSE Serine/arginine-rich splicing factor 4 OS=Mus musculus GN=Srsf4
PE=2 SV=1
Length = 489
Score = 99.0 bits (245), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 94/173 (54%), Gaps = 20/173 (11%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+Y+G L R R+VE F YG I+++DLK GY F+EF+D RDA+DA+ +G
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKN-----GYGFVEFDDLRDADDAVYELNGK 58
Query: 69 NFDGYRLRVELAHGGRRHSSSMDRYSSYS---SGGSR-GVSRRSDYRVLVTGLPSSASWQ 124
+ G R+ VE A G RR S S Y SG + G R++YR++V L S SWQ
Sbjct: 59 DLCGERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQ 118
Query: 125 DLKDHMRRAGDVCFSQVFRDR-----------GELHWRMLRFWGGEVNWGEIR 166
DLKD+MR+AG+V ++ + R ++ + + G EVN +IR
Sbjct: 119 DLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIR 171
>sp|Q08170|SRSF4_HUMAN Serine/arginine-rich splicing factor 4 OS=Homo sapiens GN=SRSF4
PE=1 SV=2
Length = 494
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 94/173 (54%), Gaps = 20/173 (11%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+Y+G L R R+VE F YG I+++DLK GY F+EF+D RDA+DA+ +G
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLK-----NGYGFVEFDDLRDADDAVYELNGK 58
Query: 69 NFDGYRLRVELAHGGRRHSSSMDRYSSYS---SGGSR-GVSRRSDYRVLVTGLPSSASWQ 124
+ G R+ VE A G RR S S Y SG + G R++YR++V L S SWQ
Sbjct: 59 DLCGERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQ 118
Query: 125 DLKDHMRRAGDVCFSQVFRDR-----------GELHWRMLRFWGGEVNWGEIR 166
DLKD+MR+AG+V ++ + R ++ + + G EVN +IR
Sbjct: 119 DLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIR 171
Score = 32.0 bits (71), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 7/108 (6%)
Query: 135 DVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFIYFKCMR 194
D+C +V + R + G +G R +GR G YR + + +C
Sbjct: 59 DLCGERVIVEHARGPRRDGSYGSGRSGYG-YRRSGRDKYGPPTRTEYRLIVENLSSRCSW 117
Query: 195 LSYFKHFRESYHNIFAGM------TGIVDYTSYDDMKYAIRKLDRSEF 236
+ R++ +A G++++ SY DMK A+ KLD +E
Sbjct: 118 QDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEV 165
>sp|P26686|SRR55_DROME Serine-arginine protein 55 OS=Drosophila melanogaster GN=B52 PE=1
SV=4
Length = 376
Score = 89.4 bits (220), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 81/155 (52%), Gaps = 23/155 (14%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVG LP R R++E F YG DI +K GY F+EFEDYRDA+DA+ +G
Sbjct: 6 VYVGGLPYGVRERDLERFFKGYGRTRDILIK-----NGYGFVEFEDYRDADDAVYELNGK 60
Query: 69 NFDGYRLRVELAHGGRRHSS-------------SMDRYSSYSSGGSRGVSR-----RSDY 110
G R+ VE A G R S+ + + SR SR R++Y
Sbjct: 61 ELLGERVVVEPARGTARGSNRDRYDDRYGGRRGGGGGRYNEKNKNSRSSSRYGPPLRTEY 120
Query: 111 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR 145
R++V L S SWQDLKD+MR+AG+V ++ + R
Sbjct: 121 RLIVENLSSRVSWQDLKDYMRQAGEVTYADAHKQR 155
>sp|Q13247|SRSF6_HUMAN Serine/arginine-rich splicing factor 6 OS=Homo sapiens GN=SRSF6
PE=1 SV=2
Length = 344
Score = 88.2 bits (217), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 95/179 (53%), Gaps = 26/179 (14%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+Y+G L + R ++++ F YG ++++DLK GY F+EFED RDA+DA+ +G
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEVDLK-----NGYGFVEFEDSRDADDAVYELNGK 58
Query: 69 NFDGYRLRVELAHGGRRH---------SSSMDRYSSYSSGGSR-GVSRRSDYRVLVTGLP 118
G R+ VE A G RR S S +SG + G R++YR++V L
Sbjct: 59 ELCGERVIVEHARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENLS 118
Query: 119 SSASWQDLKDHMRRAGDVCFSQVFRDR---GELHWR--------MLRFWGGEVNWGEIR 166
S SWQDLKD MR+AG+V ++ ++R G + +R + + G E+N IR
Sbjct: 119 SRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNIR 177
>sp|Q3B7L6|SRSF6_BOVIN Serine/arginine-rich splicing factor 6 OS=Bos taurus GN=SRSF6 PE=2
SV=1
Length = 345
Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 94/179 (52%), Gaps = 26/179 (14%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+Y+G L + R ++++ F YG ++ IDLK GY F+EFED RDA+DA+ +G
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLGIDLK-----NGYGFVEFEDSRDADDAVYELNGK 58
Query: 69 NFDGYRLRVELAHGGRRH---------SSSMDRYSSYSSGGSR-GVSRRSDYRVLVTGLP 118
G R+ VE A G RR S S +SG + G R+++R++V L
Sbjct: 59 ELCGERVIVEHARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEFRLIVENLS 118
Query: 119 SSASWQDLKDHMRRAGDVCFSQVFRDR---GELHWR--------MLRFWGGEVNWGEIR 166
S SWQDLKD MR+AG+V ++ ++R G + +R + + G E+N IR
Sbjct: 119 SRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNIR 177
>sp|Q09167|SRSF5_RAT Serine/arginine-rich splicing factor 5 OS=Rattus norvegicus
GN=Srsf5 PE=2 SV=1
Length = 269
Score = 82.8 bits (203), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 89/175 (50%), Gaps = 22/175 (12%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+++G L R ++VE F YG I DIDLK G+ F+EFED RDA+DA+ DG
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK-----RGFGFVEFEDPRDADDAVYELDGK 60
Query: 69 NFDGYRLRVELAHGGRRHSSSMDRYSS-YSSGGSRGVSR-----RSDYRVLVTGLPSSAS 122
R+ +E A R RYS +SS R R R++ R++V L S S
Sbjct: 61 ELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVS 120
Query: 123 WQDLKDHMRRAGDVCFSQVFRDR-----------GELHWRMLRFWGGEVNWGEIR 166
WQDLKD MR+AG+V F+ R + G+L + + G E+N +I+
Sbjct: 121 WQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIK 175
>sp|O35326|SRSF5_MOUSE Serine/arginine-rich splicing factor 5 OS=Mus musculus GN=Srsf5
PE=1 SV=2
Length = 269
Score = 82.8 bits (203), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 89/175 (50%), Gaps = 22/175 (12%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+++G L R ++VE F YG I DIDLK G+ F+EFED RDA+DA+ DG
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK-----RGFGFVEFEDPRDADDAVYELDGK 60
Query: 69 NFDGYRLRVELAHGGRRHSSSMDRYSS-YSSGGSRGVSR-----RSDYRVLVTGLPSSAS 122
R+ +E A R RYS +SS R R R++ R++V L S S
Sbjct: 61 ELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVS 120
Query: 123 WQDLKDHMRRAGDVCFSQVFRDR-----------GELHWRMLRFWGGEVNWGEIR 166
WQDLKD MR+AG+V F+ R + G+L + + G E+N +I+
Sbjct: 121 WQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIK 175
>sp|Q13243|SRSF5_HUMAN Serine/arginine-rich splicing factor 5 OS=Homo sapiens GN=SRSF5
PE=1 SV=1
Length = 272
Score = 82.8 bits (203), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 89/175 (50%), Gaps = 22/175 (12%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+++G L R ++VE F YG I DIDLK G+ F+EFED RDA+DA+ DG
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK-----RGFGFVEFEDPRDADDAVYELDGK 60
Query: 69 NFDGYRLRVELAHGGRRHSSSMDRYSS-YSSGGSRGVSR-----RSDYRVLVTGLPSSAS 122
R+ +E A R RYS +SS R R R++ R++V L S S
Sbjct: 61 ELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVS 120
Query: 123 WQDLKDHMRRAGDVCFSQVFRDR-----------GELHWRMLRFWGGEVNWGEIR 166
WQDLKD MR+AG+V F+ R + G+L + + G E+N +I+
Sbjct: 121 WQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIK 175
>sp|Q23120|RSP2_CAEEL Probable splicing factor, arginine/serine-rich 2 OS=Caenorhabditis
elegans GN=rsp-2 PE=3 SV=1
Length = 281
Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 71/138 (51%), Gaps = 17/138 (12%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+Y+G LP R+VE F YG + D+ +K G+ F++F+D RDA+DA+ +G
Sbjct: 4 VYIGRLPNRASDRDVEHFFRGYGKLSDVIMK-----NGFGFVDFQDQRDADDAVHDLNGK 58
Query: 69 NFDGYRLRVELA------HGGRRHSSSMDRYSSYSSGGSRGVSRR------SDYRVLVTG 116
G R+ +E + R S R ++ GG R S R + +R+++
Sbjct: 59 ELCGERVILEFPRRKVGYNEERSGSGFRGREPTFRKGGERQFSNRYSRPCSTRFRLVIDN 118
Query: 117 LPSSASWQDLKDHMRRAG 134
L + SWQD+KDH+R+ G
Sbjct: 119 LSTRYSWQDIKDHIRKLG 136
>sp|Q02427|RBP1_DROME RNA-binding protein 1 OS=Drosophila melanogaster GN=Rbp1 PE=2
SV=3
Length = 144
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNL E+E F KYGP+ ++ + PPG+AF+EFED RDAEDA R DG
Sbjct: 13 VYVGNLGSSASKHEIEGAFAKYGPLRNV--WVARNPPGFAFVEFEDRRDAEDATRALDGT 70
Query: 69 NFDGYRLRVEL 79
G R+RVE+
Sbjct: 71 RCCGTRIRVEM 81
>sp|P78814|SRP2_SCHPO Pre-mRNA-splicing factor srp2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=srp2 PE=1 SV=2
Length = 365
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 64/136 (47%), Gaps = 9/136 (6%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
L+VG +P ++ D F YG I+D L G+ F+E ED RDA D + G
Sbjct: 6 LFVGRIPPQATREDMMDFFKGYGQILDCKLMN-----GFGFVEVEDARDARDIVNDFQGK 60
Query: 69 NFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKD 128
F G R+ VE A S+ RR+ +R++V L SWQDLKD
Sbjct: 61 EFMGSRIVVEPAR----GERRRRENFRESAASKYPRPRRTGFRLIVENLSEDVSWQDLKD 116
Query: 129 HMRRAGDVCFSQVFRD 144
MR+AG+ F+ R+
Sbjct: 117 VMRKAGEPTFTDAHRE 132
>sp|Q8BL97|SRSF7_MOUSE Serine/arginine-rich splicing factor 7 OS=Mus musculus GN=Srsf7
PE=1 SV=1
Length = 267
Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Query: 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRG 64
S +YVGNL E+E F YGP+ + I PPG+AF+EFED RDAEDA+RG
Sbjct: 38 SETKVYVGNLGTGAGKGELERAFSYYGPLRTV--WIARNPPGFAFVEFEDPRDAEDAVRG 95
Query: 65 RDGYNFDGYRLRVELAHGGRRHS 87
DG G R+RVEL+ G R S
Sbjct: 96 LDGKVICGSRVRVELSTGMPRRS 118
>sp|Q18409|RSP6_CAEEL Probable splicing factor, arginine/serine-rich 6
OS=Caenorhabditis elegans GN=rsp-6 PE=3 SV=1
Length = 179
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 49/72 (68%), Gaps = 2/72 (2%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVG LP D +E+E++F ++G I + + RPPG+AF+E++D RDAEDA+R DG
Sbjct: 5 VYVGGLPSDATSQELEEIFDRFGRIRKV--WVARRPPGFAFVEYDDVRDAEDAVRALDGS 62
Query: 69 NFDGYRLRVELA 80
G R RVEL+
Sbjct: 63 RICGVRARVELS 74
>sp|Q16629|SRSF7_HUMAN Serine/arginine-rich splicing factor 7 OS=Homo sapiens GN=SRSF7
PE=1 SV=1
Length = 238
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNL E+E F YGP+ + I PPG+AF+EFED RDAEDA+RG DG
Sbjct: 13 VYVGNLGTGAGKGELERAFSYYGPLRTV--WIARNPPGFAFVEFEDPRDAEDAVRGLDGK 70
Query: 69 NFDGYRLRVELAHGGRRHS 87
G R+RVEL+ G R S
Sbjct: 71 VICGSRVRVELSTGMPRRS 89
>sp|P84104|SRSF3_MOUSE Serine/arginine-rich splicing factor 3 OS=Mus musculus GN=Srsf3
PE=1 SV=1
Length = 164
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNL + E+E F YGP+ + + PPG+AF+EFED RDA DA+R DG
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSV--WVARNPPGFAFVEFEDPRDAADAVRELDGR 69
Query: 69 NFDGYRLRVELAHGGRR 85
G R+RVEL++G +R
Sbjct: 70 TLCGCRVRVELSNGEKR 86
>sp|P84103|SRSF3_HUMAN Serine/arginine-rich splicing factor 3 OS=Homo sapiens GN=SRSF3
PE=1 SV=1
Length = 164
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNL + E+E F YGP+ + + PPG+AF+EFED RDA DA+R DG
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSV--WVARNPPGFAFVEFEDPRDAADAVRELDGR 69
Query: 69 NFDGYRLRVELAHGGRR 85
G R+RVEL++G +R
Sbjct: 70 TLCGCRVRVELSNGEKR 86
>sp|Q3SZR8|SRSF3_BOVIN Serine/arginine-rich splicing factor 3 OS=Bos taurus GN=SRSF3
PE=2 SV=1
Length = 164
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNL + E+E F YGP+ + + PPG+AF+EFED RDA DA+R DG
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSV--WVARNPPGFAFVEFEDPRDAADAVRELDGR 69
Query: 69 NFDGYRLRVELAHGGRR 85
G R+RVEL++G +R
Sbjct: 70 TLCGCRVRVELSNGEKR 86
>sp|Q3T106|SRSF7_BOVIN Serine/arginine-rich splicing factor 7 OS=Bos taurus GN=SRSF7
PE=2 SV=1
Length = 235
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNL E+E F YGP+ + I PPG+AF+EFED RDAEDA+RG DG
Sbjct: 13 VYVGNLGTGAGKGELERAFSYYGPLRTV--WIARNPPGFAFVEFEDPRDAEDAVRGLDGK 70
Query: 69 NFDGYRLRVELAHGGRRHS 87
G R+RVEL+ G R S
Sbjct: 71 VICGSRVRVELSTGMPRRS 89
>sp|Q8VYA5|RSZ33_ARATH Serine/arginine-rich splicing factor RS2Z33 OS=Arabidopsis
thaliana GN=RS2Z33 PE=1 SV=1
Length = 290
Score = 65.5 bits (158), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 50/83 (60%), Gaps = 5/83 (6%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
LYVG L TR R++E LF +YG + D+D+K YAF+EF D RDA+DA DG
Sbjct: 13 LYVGRLSSRTRTRDLERLFSRYGRVRDVDMKR-----DYAFVEFGDPRDADDARHYLDGR 67
Query: 69 NFDGYRLRVELAHGGRRHSSSMD 91
+FDG R+ VE + G R S D
Sbjct: 68 DFDGSRITVEFSRGAPRGSRDFD 90
>sp|Q9FYB7|RSZ32_ARATH Serine/arginine-rich splicing factor RS2Z32 OS=Arabidopsis
thaliana GN=RS2Z32 PE=1 SV=1
Length = 284
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 49/79 (62%), Gaps = 5/79 (6%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
LYVG L TR R++E LF +YG + D+D+K YAF+EF D RDA+DA DG
Sbjct: 13 LYVGRLSSRTRTRDLERLFSRYGRVRDVDMKR-----DYAFVEFSDPRDADDARYYLDGR 67
Query: 69 NFDGYRLRVELAHGGRRHS 87
+FDG R+ VE + G R S
Sbjct: 68 DFDGSRITVEASRGAPRGS 86
>sp|Q9R0U0|SRS10_MOUSE Serine/arginine-rich splicing factor 10 OS=Mus musculus GN=Srsf10
PE=1 SV=2
Length = 262
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Query: 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRG 64
+L+V N+ DTR ++ F +YGPIVD+ + + RP G+A+++FED RDAEDA+
Sbjct: 11 SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHN 70
Query: 65 RDGYNFDGYRLRVELAHGGRRHSSSM 90
D G ++ ++ A G R+ + M
Sbjct: 71 LDRKWICGRQIEIQFAQGDRKTPNQM 96
>sp|O75494|SRS10_HUMAN Serine/arginine-rich splicing factor 10 OS=Homo sapiens GN=SRSF10
PE=1 SV=1
Length = 262
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Query: 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRG 64
+L+V N+ DTR ++ F +YGPIVD+ + + RP G+A+++FED RDAEDA+
Sbjct: 11 SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHN 70
Query: 65 RDGYNFDGYRLRVELAHGGRRHSSSM 90
D G ++ ++ A G R+ + M
Sbjct: 71 LDRKWICGRQIEIQFAQGDRKTPNQM 96
>sp|Q23121|RSP1_CAEEL Probable splicing factor, arginine/serine-rich 1 OS=Caenorhabditis
elegans GN=rsp-1 PE=3 SV=1
Length = 312
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 68/154 (44%), Gaps = 33/154 (21%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+Y+G L +++E F YG I D+ LK G+ F+EF+D RDAEDA+ +G
Sbjct: 5 IYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKN-----GFGFVEFDDKRDAEDAVHDLNGK 59
Query: 69 NFDGYRLRVE-----------------------LAHGGRRHSSSMDRYSSYSSGGSRGVS 105
G R+ ++ ++ DR+ Y G R S
Sbjct: 60 ELGGERVILDYSKPRGGGGDRGGFGGGGRGGARVSSYSGGGGGGRDRFDRYDRGPPRRES 119
Query: 106 R-----RSDYRVLVTGLPSSASWQDLKDHMRRAG 134
R + +RV+V L S SWQDLKD +RR G
Sbjct: 120 RYGRPYSTRHRVVVENLSSRISWQDLKDQVRRQG 153
>sp|P92964|RSP31_ARATH Arginine/serine-rich-splicing factor RSP31 OS=Arabidopsis
thaliana GN=RSP31 PE=1 SV=2
Length = 264
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 50/81 (61%), Gaps = 9/81 (11%)
Query: 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRD 66
R ++VGN +TR ++E LF KYG + +D+K GYAF+ FED RDAEDAIR D
Sbjct: 2 RPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKS-----GYAFVYFEDERDAEDAIRKLD 56
Query: 67 GYNFDGY---RLRVELAHGGR 84
+ F GY RL VE A G R
Sbjct: 57 NFPF-GYEKRRLSVEWAKGER 76
>sp|Q10021|RSP5_CAEEL Probable splicing factor, arginine/serine-rich 5
OS=Caenorhabditis elegans GN=rsp-5 PE=3 SV=3
Length = 208
Score = 61.2 bits (147), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 45/76 (59%), Gaps = 7/76 (9%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
LY+G +P + R R+VE YG I +I +K G+AF++FED RDAEDA DG
Sbjct: 4 LYLGKIPYNARERDVERFLKGYGKINNISMKY-----GFAFVDFEDSRDAEDACHDLDGK 58
Query: 69 NFDG--YRLRVELAHG 82
+G RL VE+A G
Sbjct: 59 TMEGSSMRLVVEMARG 74
>sp|O81126|RZP22_ARATH Serine/arginine-rich splicing factor RSZ22 OS=Arabidopsis
thaliana GN=RSZ22 PE=1 SV=1
Length = 200
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 6/74 (8%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNL RE+ED F +G + + + RPPGYAFL+FED RDA DAIR DG
Sbjct: 4 VYVGNLDPRVTERELEDEFRAFGVVRSV--WVARRPPGYAFLDFEDPRDARDAIRALDGK 61
Query: 69 NFDGYRLRVELAHG 82
N G+ RVE +H
Sbjct: 62 N--GW--RVEQSHN 71
>sp|Q69KL9|RZ21A_ORYSJ Serine/arginine-rich splicing factor RSZ21A OS=Oryza sativa
subsp. japonica GN=RSZ21A PE=2 SV=1
Length = 185
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 52/90 (57%), Gaps = 6/90 (6%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNL RE+ED F +G + + + +PPG+AF++F+D RDA+DAIR DG
Sbjct: 4 VYVGNLDPRVTARELEDEFRVFGVLRSV--WVARKPPGFAFIDFDDRRDAQDAIRDIDGK 61
Query: 69 NFDGYRLRVELAHGGRRHSSSMDRYSSYSS 98
N G+ RVEL+ DRY S S
Sbjct: 62 N--GW--RVELSRNASSGRGGRDRYGSSES 87
>sp|Q9SJA6|RZ22A_ARATH Serine/arginine-rich splicing factor RSZ22A OS=Arabidopsis
thaliana GN=RSZ22A PE=1 SV=1
Length = 196
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 46/74 (62%), Gaps = 6/74 (8%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNL RE+ED F +G I + + RPPGYAFL+FED RDA DAIR DG
Sbjct: 4 VYVGNLDPRVTERELEDEFRSFGVIRSV--WVARRPPGYAFLDFEDSRDARDAIREVDGK 61
Query: 69 NFDGYRLRVELAHG 82
N G+ RVE +H
Sbjct: 62 N--GW--RVEQSHN 71
>sp|Q6K9C3|RZP23_ORYSJ Serine/arginine-rich splicing factor RSZ23 OS=Oryza sativa subsp.
japonica GN=RSZ23 PE=2 SV=1
Length = 200
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 46/74 (62%), Gaps = 4/74 (5%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNL RE+ED F +G + + + +PPG+AF++F+D RDAEDAIR DG
Sbjct: 4 VYVGNLDPRVTAREIEDEFRVFGVLRSVWVAR--KPPGFAFIDFDDRRDAEDAIRDLDGK 61
Query: 69 NFDGYRLRVELAHG 82
N G+R+ + G
Sbjct: 62 N--GWRVELSTKAG 73
>sp|Q8WXF0|SRS12_HUMAN Serine/arginine-rich splicing factor 12 OS=Homo sapiens GN=SRSF12
PE=2 SV=1
Length = 261
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 13/91 (14%)
Query: 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRG 64
+L++ N+ TR ++ F +YGPIVD+ + + RP G+A+++FED RDAEDA+
Sbjct: 11 SLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDAL-- 68
Query: 65 RDGYNFD-----GYRLRVELAHGGRRHSSSM 90
YN + G ++ ++ A G R+ M
Sbjct: 69 ---YNLNRKWVCGRQIEIQFAQGDRKTPGQM 96
>sp|P92965|RSP40_ARATH Arginine/serine-rich-splicing factor RSP40 OS=Arabidopsis
thaliana GN=RSP40 PE=1 SV=2
Length = 350
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 44/74 (59%), Gaps = 7/74 (9%)
Query: 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRD 66
+ ++ GN D R ++E LF KYG + +D+K G+AF+ ED RDAEDAIR D
Sbjct: 2 KPVFCGNFEYDAREGDLERLFRKYGKVERVDMKA-----GFAFVYMEDERDAEDAIRALD 56
Query: 67 GYNF--DGYRLRVE 78
+ F G RLRVE
Sbjct: 57 RFEFGRKGRRLRVE 70
Score = 38.9 bits (89), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 9/67 (13%)
Query: 4 RSSRTLYVGNLPGD-TRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAI 62
R S+TL+V N D TR R++E F YG IV++ ++ +AF+++E EDA
Sbjct: 94 RPSKTLFVINFDADNTRTRDLEKHFEPYGKIVNVRIRR-----NFAFIQYE---AQEDAT 145
Query: 63 RGRDGYN 69
R D N
Sbjct: 146 RALDASN 152
>sp|O81127|RZP21_ARATH Serine/arginine-rich splicing factor RSZ21 OS=Arabidopsis
thaliana GN=RSZ21 PE=1 SV=1
Length = 187
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 46/73 (63%), Gaps = 6/73 (8%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNL RE+ED F +G + ++ + RPPGYAFLEF+D RDA DAI D
Sbjct: 4 VYVGNLDPRVTERELEDEFKAFGVLRNV--WVARRPPGYAFLEFDDERDALDAISALDRK 61
Query: 69 NFDGYRLRVELAH 81
N G+ RVEL+H
Sbjct: 62 N--GW--RVELSH 70
>sp|Q4R979|RBM4_MACFA RNA-binding protein 4 OS=Macaca fascicularis GN=RBM4 PE=2 SV=1
Length = 364
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAI 62
S++S L+VGN+ +E+ F +YGP+++ D+ YAF+ E DA +AI
Sbjct: 74 SKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDI-----VKDYAFVHMERAEDAVEAI 128
Query: 63 RGRDGYNFDGYRLRVELAHGGRRHSSSM-DRYSSYSSG 99
RG D F G R+ V+L+ R + M D+ Y G
Sbjct: 129 RGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCG 166
Score = 55.1 bits (131), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
L++GNLP + +E+ LF +YG +++ D+ Y F+ ED AEDAIR Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDI-----IKNYGFVHIEDKTAAEDAIRNLHHY 58
Query: 69 NFDGYRLRVELAHGGRRHSSSM 90
G + VE + + S+ +
Sbjct: 59 KLHGVNINVEASKNKSKTSTKL 80
>sp|Q9BWF3|RBM4_HUMAN RNA-binding protein 4 OS=Homo sapiens GN=RBM4 PE=1 SV=1
Length = 364
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAI 62
S++S L+VGN+ +E+ F +YGP+++ D+ YAF+ E DA +AI
Sbjct: 74 SKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDI-----VKDYAFVHMERAEDAVEAI 128
Query: 63 RGRDGYNFDGYRLRVELAHGGRRHSSSM-DRYSSYSSG 99
RG D F G R+ V+L+ R + M D+ Y G
Sbjct: 129 RGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCG 166
Score = 55.1 bits (131), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
L++GNLP + +E+ LF +YG +++ D+ Y F+ ED AEDAIR Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDI-----IKNYGFVHIEDKTAAEDAIRNLHHY 58
Query: 69 NFDGYRLRVELAHGGRRHSSSM 90
G + VE + + S+ +
Sbjct: 59 KLHGVNINVEASKNKSKTSTKL 80
>sp|Q6K4N0|RSZ21_ORYSJ Serine/arginine-rich splicing factor RSZ21 OS=Oryza sativa subsp.
japonica GN=RSZP21 PE=2 SV=1
Length = 185
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 61/115 (53%), Gaps = 10/115 (8%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
LYVGNL E+ED F +G + + + +PPG+AF++F+D RDAEDA+R DG
Sbjct: 4 LYVGNLDPRVTSGELEDEFRVFGVLRSV--WVARKPPGFAFIDFDDKRDAEDALRDLDGK 61
Query: 69 NFDGYRL---RVELAHGGR-RHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPS 119
N G+R+ R + GGR RH S Y G + +R R+ GL S
Sbjct: 62 N--GWRVELSRNSSSRGGRDRHGGS--EMKCYECGETGHFARECRLRIGPGGLGS 112
>sp|Q3MHX3|RBM4_BOVIN RNA-binding protein 4 OS=Bos taurus GN=RBM4 PE=2 SV=1
Length = 362
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAI 62
S++S L+VGN+ +E+ F +YGP+++ D+ YAF+ E DA +AI
Sbjct: 74 SKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDI-----VKDYAFVHMERAEDAVEAI 128
Query: 63 RGRDGYNFDGYRLRVELAHGGRRHSSSM-DRYSSYSSG 99
RG D F G R+ V+L+ R + M D+ Y G
Sbjct: 129 RGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCG 166
Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
L++GNLP + +E+ LF +YG +++ D+ Y F+ ED AEDAIR Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDI-----IKNYGFVHIEDKTAAEDAIRNLHHY 58
Query: 69 NFDGYRLRVELAHGGRRHSSSM 90
G + VE + + S+ +
Sbjct: 59 KLHGVNINVEASKNKSKTSTKL 80
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 135,635,853
Number of Sequences: 539616
Number of extensions: 6202343
Number of successful extensions: 30596
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 810
Number of HSP's that attempted gapping in prelim test: 19492
Number of HSP's gapped (non-prelim): 5710
length of query: 341
length of database: 191,569,459
effective HSP length: 118
effective length of query: 223
effective length of database: 127,894,771
effective search space: 28520533933
effective search space used: 28520533933
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)