Query 019418
Match_columns 341
No_of_seqs 381 out of 2564
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 09:18:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019418.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019418hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 1.7E-31 3.6E-36 245.2 20.1 165 4-250 105-272 (346)
2 KOG0105 Alternative splicing f 100.0 1.4E-30 3.1E-35 208.0 20.1 186 1-253 1-192 (241)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 5.1E-30 1.1E-34 239.5 24.2 122 5-146 2-126 (352)
4 TIGR01645 half-pint poly-U bin 100.0 5.3E-29 1.1E-33 240.2 20.6 174 5-251 106-282 (612)
5 KOG0117 Heterogeneous nuclear 100.0 3.8E-28 8.2E-33 218.0 19.9 214 5-252 82-330 (506)
6 KOG0148 Apoptosis-promoting RN 100.0 2.3E-28 4.9E-33 206.5 13.2 171 8-248 64-237 (321)
7 TIGR01628 PABP-1234 polyadenyl 100.0 4.6E-27 1E-31 232.3 21.3 207 8-237 2-245 (562)
8 TIGR01622 SF-CC1 splicing fact 100.0 8.2E-27 1.8E-31 225.3 21.0 175 3-250 86-263 (457)
9 TIGR01628 PABP-1234 polyadenyl 99.9 1.7E-26 3.6E-31 228.4 21.1 222 6-251 88-362 (562)
10 TIGR01648 hnRNP-R-Q heterogene 99.9 5.8E-26 1.2E-30 219.0 21.8 214 5-252 57-306 (578)
11 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 3.6E-25 7.8E-30 214.1 22.1 160 5-239 1-162 (481)
12 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 6.2E-25 1.3E-29 212.5 22.7 172 5-240 274-465 (481)
13 KOG0109 RNA-binding protein LA 99.9 4.4E-26 9.5E-31 194.5 12.2 139 7-240 3-141 (346)
14 TIGR01642 U2AF_lg U2 snRNP aux 99.9 6.9E-25 1.5E-29 214.7 21.3 173 3-239 172-365 (509)
15 KOG0144 RNA-binding protein CU 99.9 1.6E-25 3.4E-30 200.3 13.2 168 5-254 33-207 (510)
16 KOG0145 RNA-binding protein EL 99.9 3.1E-25 6.8E-30 186.5 14.2 163 4-246 39-204 (360)
17 TIGR01642 U2AF_lg U2 snRNP aux 99.9 2.5E-24 5.4E-29 210.7 22.0 185 5-250 294-499 (509)
18 KOG0131 Splicing factor 3b, su 99.9 1.2E-24 2.6E-29 174.0 12.8 164 4-250 7-174 (203)
19 TIGR01622 SF-CC1 splicing fact 99.9 3E-23 6.5E-28 200.5 22.0 176 6-249 186-444 (457)
20 KOG0127 Nucleolar protein fibr 99.9 4.8E-23 1E-27 189.3 15.8 175 5-240 4-187 (678)
21 KOG0127 Nucleolar protein fibr 99.9 3E-22 6.5E-27 184.1 19.1 167 5-231 116-354 (678)
22 KOG0124 Polypyrimidine tract-b 99.9 1E-23 2.2E-28 185.0 8.7 168 7-247 114-284 (544)
23 KOG0106 Alternative splicing f 99.9 1E-22 2.2E-27 171.2 11.4 159 7-239 2-161 (216)
24 KOG0145 RNA-binding protein EL 99.9 3.6E-22 7.9E-27 168.1 14.2 175 5-239 126-348 (360)
25 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 4.2E-21 9.2E-26 179.4 21.6 184 5-252 88-348 (352)
26 KOG0123 Polyadenylate-binding 99.9 1.7E-20 3.6E-25 173.5 16.1 143 7-240 2-144 (369)
27 KOG0107 Alternative splicing f 99.8 6E-20 1.3E-24 146.3 16.2 79 4-84 8-86 (195)
28 KOG0110 RNA-binding protein (R 99.8 2.2E-20 4.8E-25 177.1 13.3 163 7-240 516-684 (725)
29 KOG0148 Apoptosis-promoting RN 99.8 3.5E-20 7.7E-25 157.1 10.0 132 1-239 1-132 (321)
30 KOG0123 Polyadenylate-binding 99.8 1.5E-19 3.4E-24 167.1 14.3 163 3-239 73-236 (369)
31 KOG4206 Spliceosomal protein s 99.8 8.4E-19 1.8E-23 146.1 16.1 172 1-237 4-209 (221)
32 KOG4207 Predicted splicing fac 99.8 3.1E-19 6.8E-24 145.7 12.9 79 5-83 12-93 (256)
33 KOG0107 Alternative splicing f 99.8 1.1E-18 2.4E-23 139.1 15.7 77 109-254 10-86 (195)
34 TIGR01648 hnRNP-R-Q heterogene 99.8 1.2E-18 2.6E-23 168.4 17.6 125 4-143 136-269 (578)
35 KOG4207 Predicted splicing fac 99.8 1.7E-18 3.6E-23 141.4 13.8 78 103-240 7-84 (256)
36 KOG4676 Splicing factor, argin 99.8 1.4E-19 2.9E-24 160.5 7.7 141 5-146 6-188 (479)
37 PLN03134 glycine-rich RNA-bind 99.8 1.9E-18 4E-23 139.7 13.5 82 4-85 32-116 (144)
38 TIGR01645 half-pint poly-U bin 99.8 2.5E-17 5.5E-22 159.6 21.4 78 5-82 203-283 (612)
39 KOG4205 RNA-binding protein mu 99.8 4.5E-18 9.8E-23 152.2 12.9 131 1-146 1-134 (311)
40 KOG0117 Heterogeneous nuclear 99.8 8.1E-18 1.8E-22 151.9 14.6 127 3-144 161-294 (506)
41 KOG0147 Transcriptional coacti 99.8 3.4E-18 7.4E-23 158.2 12.0 76 7-82 279-357 (549)
42 KOG0147 Transcriptional coacti 99.8 4.1E-19 8.9E-24 164.3 5.5 171 3-240 176-349 (549)
43 KOG0144 RNA-binding protein CU 99.7 8E-17 1.7E-21 144.8 12.9 79 6-84 124-207 (510)
44 KOG1457 RNA binding protein (c 99.7 2.6E-16 5.7E-21 130.1 14.6 170 5-238 33-275 (284)
45 KOG0121 Nuclear cap-binding pr 99.7 4.5E-17 9.7E-22 123.2 6.9 80 4-83 34-116 (153)
46 KOG1548 Transcription elongati 99.7 1.6E-15 3.4E-20 133.2 17.2 182 3-252 131-351 (382)
47 PF00076 RRM_1: RNA recognitio 99.7 1.1E-16 2.3E-21 113.3 8.1 68 9-76 1-70 (70)
48 KOG0146 RNA-binding protein ET 99.7 3.9E-16 8.5E-21 132.3 11.7 78 5-82 18-100 (371)
49 PLN03120 nucleic acid binding 99.7 5.9E-16 1.3E-20 133.8 11.5 79 5-84 3-81 (260)
50 KOG0113 U1 small nuclear ribon 99.6 4.2E-15 9.1E-20 128.1 14.9 80 3-82 98-180 (335)
51 KOG0114 Predicted RNA-binding 99.6 1.6E-15 3.5E-20 110.5 8.9 81 4-84 16-96 (124)
52 KOG0110 RNA-binding protein (R 99.6 3.5E-15 7.6E-20 142.1 12.9 177 4-240 383-589 (725)
53 PLN03121 nucleic acid binding 99.6 4.6E-15 1E-19 126.2 11.4 79 5-84 4-82 (243)
54 KOG4211 Splicing factor hnRNP- 99.6 1.6E-14 3.5E-19 132.5 15.3 123 5-138 9-132 (510)
55 KOG4212 RNA-binding protein hn 99.6 3E-14 6.4E-19 128.5 16.7 171 5-236 43-281 (608)
56 PF14259 RRM_6: RNA recognitio 99.6 3.2E-15 7E-20 105.9 8.0 68 9-76 1-70 (70)
57 KOG0122 Translation initiation 99.6 3.7E-15 8E-20 125.1 9.3 80 4-83 187-269 (270)
58 COG0724 RNA-binding proteins ( 99.6 2.5E-14 5.5E-19 128.1 14.3 141 6-146 115-262 (306)
59 TIGR01659 sex-lethal sex-letha 99.6 1.1E-14 2.4E-19 134.2 10.9 81 5-85 192-277 (346)
60 KOG0125 Ataxin 2-binding prote 99.6 9.8E-15 2.1E-19 127.3 8.1 80 4-83 94-174 (376)
61 KOG0130 RNA-binding protein RB 99.6 6.8E-15 1.5E-19 112.4 6.1 79 5-83 71-152 (170)
62 PLN03213 repressor of silencin 99.5 2.2E-14 4.7E-19 131.2 9.8 77 4-82 8-87 (759)
63 KOG1190 Polypyrimidine tract-b 99.5 3.8E-13 8.3E-18 120.6 17.0 168 6-239 297-480 (492)
64 smart00362 RRM_2 RNA recogniti 99.5 6.2E-14 1.4E-18 98.8 9.5 71 8-78 1-72 (72)
65 KOG0126 Predicted RNA-binding 99.5 1.7E-15 3.7E-20 121.5 1.1 82 4-85 33-117 (219)
66 KOG0120 Splicing factor U2AF, 99.5 6E-14 1.3E-18 131.8 11.4 178 5-240 288-483 (500)
67 KOG0149 Predicted RNA-binding 99.5 2.5E-14 5.5E-19 119.7 7.0 76 6-82 12-90 (247)
68 PLN03134 glycine-rich RNA-bind 99.5 5.4E-13 1.2E-17 107.9 12.3 83 106-252 31-113 (144)
69 KOG0111 Cyclophilin-type pepti 99.5 3.9E-14 8.4E-19 117.1 4.8 82 4-85 8-92 (298)
70 smart00360 RRM RNA recognition 99.4 4.4E-13 9.6E-18 94.1 8.5 68 11-78 1-71 (71)
71 cd00590 RRM RRM (RNA recogniti 99.4 1E-12 2.2E-17 93.1 9.7 72 8-79 1-74 (74)
72 PF13893 RRM_5: RNA recognitio 99.4 1.2E-12 2.6E-17 88.3 8.4 56 23-80 1-56 (56)
73 KOG0124 Polypyrimidine tract-b 99.4 7.5E-12 1.6E-16 110.8 15.5 76 6-81 210-288 (544)
74 KOG0108 mRNA cleavage and poly 99.4 9.5E-13 2.1E-17 123.1 9.0 79 7-85 19-100 (435)
75 KOG0113 U1 small nuclear ribon 99.4 1.2E-11 2.7E-16 106.9 14.7 75 106-240 98-172 (335)
76 KOG0129 Predicted RNA-binding 99.3 2.7E-11 5.8E-16 112.3 14.6 137 4-146 257-408 (520)
77 PF00076 RRM_1: RNA recognitio 99.3 6.6E-12 1.4E-16 88.5 7.7 67 112-239 1-67 (70)
78 KOG0125 Ataxin 2-binding prote 99.3 7.6E-12 1.7E-16 109.5 8.3 79 106-250 93-171 (376)
79 KOG0109 RNA-binding protein LA 99.3 4.4E-12 9.5E-17 109.3 6.6 81 3-88 75-155 (346)
80 smart00361 RRM_1 RNA recogniti 99.3 2.2E-11 4.8E-16 86.0 8.0 58 20-77 2-69 (70)
81 KOG1190 Polypyrimidine tract-b 99.3 1.7E-10 3.7E-15 103.8 15.1 175 8-252 152-372 (492)
82 KOG1365 RNA-binding protein Fu 99.3 2.4E-11 5.2E-16 108.3 9.0 178 6-249 161-358 (508)
83 KOG0105 Alternative splicing f 99.2 7.5E-11 1.6E-15 95.3 10.0 80 108-254 5-84 (241)
84 KOG0132 RNA polymerase II C-te 99.2 3.2E-11 6.9E-16 116.2 8.4 77 5-84 420-496 (894)
85 KOG1456 Heterogeneous nuclear 99.2 1.1E-09 2.3E-14 97.7 16.7 172 5-240 286-476 (494)
86 KOG0130 RNA-binding protein RB 99.2 7.8E-11 1.7E-15 90.4 8.2 76 105-240 68-143 (170)
87 KOG0146 RNA-binding protein ET 99.2 3.4E-11 7.4E-16 102.6 5.4 80 5-84 284-366 (371)
88 PLN03120 nucleic acid binding 99.2 2E-10 4.3E-15 99.7 10.1 74 109-250 4-77 (260)
89 KOG4212 RNA-binding protein hn 99.2 7.1E-11 1.5E-15 107.0 7.2 76 3-80 533-608 (608)
90 KOG0415 Predicted peptidyl pro 99.1 6.3E-11 1.4E-15 104.7 6.0 79 5-83 238-319 (479)
91 KOG4454 RNA binding protein (R 99.1 2E-11 4.4E-16 101.1 2.1 113 4-146 7-121 (267)
92 KOG0120 Splicing factor U2AF, 99.1 3.5E-10 7.6E-15 106.7 10.2 173 3-239 172-359 (500)
93 KOG0122 Translation initiation 99.1 6.1E-10 1.3E-14 94.0 10.3 80 106-249 186-265 (270)
94 KOG0112 Large RNA-binding prot 99.1 6.1E-11 1.3E-15 116.0 4.9 155 4-248 370-526 (975)
95 KOG1456 Heterogeneous nuclear 99.1 1.3E-08 2.9E-13 90.8 18.5 170 4-240 118-354 (494)
96 PF14259 RRM_6: RNA recognitio 99.1 3.4E-10 7.3E-15 79.9 7.0 67 112-239 1-67 (70)
97 KOG4208 Nucleolar RNA-binding 99.1 3.7E-10 8E-15 93.2 7.2 79 5-83 48-130 (214)
98 PLN03121 nucleic acid binding 99.1 9.7E-10 2.1E-14 93.9 9.7 75 109-251 5-79 (243)
99 KOG0114 Predicted RNA-binding 99.1 9.2E-10 2E-14 80.7 8.2 79 105-250 14-92 (124)
100 KOG0149 Predicted RNA-binding 99.0 4.5E-10 9.8E-15 94.4 7.0 76 109-245 12-87 (247)
101 KOG0131 Splicing factor 3b, su 99.0 3.6E-10 7.9E-15 91.3 6.1 80 5-84 95-178 (203)
102 KOG0153 Predicted RNA-binding 99.0 6.4E-10 1.4E-14 98.4 8.1 77 3-82 225-302 (377)
103 PLN03213 repressor of silencin 99.0 9.2E-10 2E-14 101.3 9.4 76 108-251 9-86 (759)
104 KOG0151 Predicted splicing reg 99.0 7.2E-10 1.6E-14 106.0 7.9 79 5-83 173-257 (877)
105 smart00362 RRM_2 RNA recogniti 99.0 2.6E-09 5.7E-14 74.8 8.4 67 111-239 1-67 (72)
106 KOG0533 RRM motif-containing p 98.9 5.8E-09 1.3E-13 90.3 8.3 78 5-82 82-161 (243)
107 KOG4661 Hsp27-ERE-TATA-binding 98.9 5.6E-09 1.2E-13 97.7 8.5 81 5-85 404-487 (940)
108 KOG0116 RasGAP SH3 binding pro 98.9 1.1E-08 2.4E-13 95.6 9.7 78 5-83 287-367 (419)
109 smart00360 RRM RNA recognition 98.9 1.4E-08 3.1E-13 70.7 8.0 66 114-239 1-66 (71)
110 KOG4205 RNA-binding protein mu 98.9 4.2E-09 9E-14 94.8 6.4 81 5-86 96-179 (311)
111 KOG4211 Splicing factor hnRNP- 98.9 5.1E-08 1.1E-12 90.2 13.4 75 5-80 102-179 (510)
112 cd00590 RRM RRM (RNA recogniti 98.9 2.7E-08 5.9E-13 69.9 9.3 68 111-239 1-68 (74)
113 KOG0121 Nuclear cap-binding pr 98.8 8.1E-09 1.8E-13 78.7 6.8 81 107-251 34-114 (153)
114 KOG0126 Predicted RNA-binding 98.8 4.4E-10 9.5E-15 90.7 -0.9 75 110-248 36-110 (219)
115 KOG0111 Cyclophilin-type pepti 98.8 4.1E-09 8.8E-14 87.6 4.6 87 107-257 8-94 (298)
116 KOG4209 Splicing factor RNPS1, 98.8 9.7E-09 2.1E-13 89.1 5.6 80 3-83 98-180 (231)
117 KOG4660 Protein Mei2, essentia 98.8 5E-09 1.1E-13 98.2 4.0 72 3-76 72-143 (549)
118 KOG2193 IGF-II mRNA-binding pr 98.8 1.5E-09 3.3E-14 98.1 0.1 144 7-240 2-148 (584)
119 COG0724 RNA-binding proteins ( 98.7 5.5E-08 1.2E-12 86.8 9.1 78 109-250 115-192 (306)
120 KOG0128 RNA-binding protein SA 98.7 1.5E-09 3.3E-14 106.1 -1.6 137 5-239 666-805 (881)
121 KOG0108 mRNA cleavage and poly 98.7 4.2E-08 9.1E-13 92.2 7.1 80 110-253 19-98 (435)
122 KOG4210 Nuclear localization s 98.7 3.7E-08 8.1E-13 88.4 5.8 163 5-238 87-253 (285)
123 PF13893 RRM_5: RNA recognitio 98.6 1.7E-07 3.7E-12 62.9 6.9 28 212-239 22-49 (56)
124 PF04059 RRM_2: RNA recognitio 98.6 3.3E-07 7.1E-12 68.1 8.5 76 7-82 2-86 (97)
125 smart00361 RRM_1 RNA recogniti 98.6 2.1E-07 4.5E-12 65.6 7.0 29 211-239 37-65 (70)
126 PF11608 Limkain-b1: Limkain b 98.6 2.6E-07 5.6E-12 65.5 7.3 70 7-83 3-77 (90)
127 KOG0415 Predicted peptidyl pro 98.5 1.9E-07 4.1E-12 83.0 6.1 72 107-238 237-308 (479)
128 KOG4676 Splicing factor, argin 98.4 5E-08 1.1E-12 87.7 0.9 63 7-71 152-214 (479)
129 KOG1365 RNA-binding protein Fu 98.3 1.3E-05 2.7E-10 72.4 12.2 124 4-132 58-184 (508)
130 KOG4208 Nucleolar RNA-binding 98.2 3.2E-06 6.8E-11 70.2 6.9 79 104-242 44-123 (214)
131 KOG0106 Alternative splicing f 98.2 7.6E-07 1.7E-11 75.6 3.1 70 3-77 96-165 (216)
132 KOG0226 RNA-binding proteins [ 98.2 1.5E-06 3.3E-11 74.1 4.7 157 9-239 99-260 (290)
133 KOG0153 Predicted RNA-binding 98.2 3.9E-06 8.5E-11 74.7 7.3 70 103-238 222-292 (377)
134 KOG1457 RNA binding protein (c 98.2 1.4E-06 3E-11 73.0 4.1 65 5-70 209-273 (284)
135 KOG2202 U2 snRNP splicing fact 98.2 5.3E-06 1.2E-10 71.1 7.5 62 21-82 83-147 (260)
136 KOG0226 RNA-binding proteins [ 98.2 2E-06 4.3E-11 73.5 4.7 76 5-80 189-267 (290)
137 KOG4206 Spliceosomal protein s 98.2 7.5E-06 1.6E-10 69.0 8.1 74 110-250 10-87 (221)
138 KOG0533 RRM motif-containing p 98.1 1.1E-05 2.3E-10 70.2 8.4 71 109-240 83-153 (243)
139 KOG4307 RNA binding protein RB 98.1 1.3E-05 2.8E-10 77.3 9.3 140 5-146 310-472 (944)
140 KOG0132 RNA polymerase II C-te 98.1 6.2E-06 1.3E-10 80.5 6.6 66 109-240 421-486 (894)
141 KOG1995 Conserved Zn-finger pr 98.1 3E-06 6.4E-11 76.0 3.9 80 5-84 65-155 (351)
142 KOG1548 Transcription elongati 98.1 2.3E-05 5E-10 69.9 8.9 79 4-83 263-352 (382)
143 COG5175 MOT2 Transcriptional r 98.0 7.5E-06 1.6E-10 72.6 5.3 77 6-82 114-202 (480)
144 PF08777 RRM_3: RNA binding mo 98.0 1.4E-05 3.1E-10 60.7 5.8 69 7-78 2-75 (105)
145 KOG4661 Hsp27-ERE-TATA-binding 98.0 1.8E-05 4E-10 74.7 7.4 78 109-250 405-482 (940)
146 KOG4210 Nuclear localization s 98.0 4.9E-06 1.1E-10 74.8 3.6 82 3-85 181-266 (285)
147 PF14605 Nup35_RRM_2: Nup53/35 97.9 2.9E-05 6.2E-10 51.2 5.3 53 6-62 1-53 (53)
148 KOG0116 RasGAP SH3 binding pro 97.8 0.00011 2.4E-09 69.0 9.9 79 109-252 288-366 (419)
149 KOG4454 RNA binding protein (R 97.8 1.7E-05 3.6E-10 66.5 3.3 73 106-240 6-78 (267)
150 PF08777 RRM_3: RNA binding mo 97.8 3.9E-05 8.5E-10 58.3 4.9 59 110-234 2-60 (105)
151 KOG4660 Protein Mei2, essentia 97.8 3.1E-05 6.7E-10 73.2 5.1 70 106-240 72-141 (549)
152 KOG3152 TBP-binding protein, a 97.7 2.5E-05 5.4E-10 67.0 3.2 70 5-74 73-157 (278)
153 KOG4849 mRNA cleavage factor I 97.7 2.4E-05 5.2E-10 69.7 3.0 75 6-80 80-159 (498)
154 KOG2314 Translation initiation 97.7 0.00013 2.8E-09 69.1 7.8 77 5-81 57-142 (698)
155 PF05172 Nup35_RRM: Nup53/35/4 97.6 0.00029 6.3E-09 52.8 7.5 75 5-81 5-90 (100)
156 KOG1855 Predicted RNA-binding 97.6 3.5E-05 7.5E-10 70.6 3.0 67 4-70 229-311 (484)
157 KOG0151 Predicted splicing reg 97.6 0.00013 2.8E-09 70.8 6.1 77 107-240 172-248 (877)
158 KOG4307 RNA binding protein RB 97.5 0.0003 6.4E-09 68.3 7.8 76 4-79 864-943 (944)
159 PF11608 Limkain-b1: Limkain b 97.5 0.00084 1.8E-08 47.9 7.4 35 212-250 40-74 (90)
160 PF08952 DUF1866: Domain of un 97.4 0.00076 1.7E-08 53.6 7.6 55 22-82 52-106 (146)
161 KOG2416 Acinus (induces apopto 97.4 0.00013 2.9E-09 69.4 3.8 76 4-82 442-521 (718)
162 PF04059 RRM_2: RNA recognitio 97.4 0.0019 4E-08 48.2 9.0 72 110-241 2-75 (97)
163 KOG0128 RNA-binding protein SA 97.3 0.00032 7E-09 69.6 5.7 78 7-84 737-816 (881)
164 KOG0115 RNA-binding protein p5 97.3 0.00064 1.4E-08 58.5 6.4 96 57-240 6-101 (275)
165 KOG0129 Predicted RNA-binding 97.2 0.002 4.3E-08 60.8 8.5 62 3-64 367-432 (520)
166 KOG1996 mRNA splicing factor [ 97.1 0.0014 2.9E-08 57.5 6.6 62 20-81 300-365 (378)
167 PF14605 Nup35_RRM_2: Nup53/35 97.1 0.0012 2.5E-08 43.5 4.9 36 110-146 2-37 (53)
168 KOG3152 TBP-binding protein, a 97.1 0.00056 1.2E-08 58.8 4.2 83 110-240 75-157 (278)
169 KOG4209 Splicing factor RNPS1, 97.1 0.0012 2.6E-08 57.6 6.0 73 107-240 99-171 (231)
170 KOG0112 Large RNA-binding prot 97.1 0.0009 1.9E-08 66.9 5.6 80 4-86 453-534 (975)
171 KOG2548 SWAP mRNA splicing reg 97.0 0.00017 3.7E-09 67.6 -0.1 14 176-189 313-326 (653)
172 PF08675 RNA_bind: RNA binding 96.9 0.0047 1E-07 44.1 6.9 54 7-66 10-63 (87)
173 KOG1855 Predicted RNA-binding 96.9 0.002 4.3E-08 59.4 6.3 83 104-233 226-308 (484)
174 KOG2314 Translation initiation 96.6 0.0048 1E-07 58.8 6.6 73 107-240 56-134 (698)
175 COG5175 MOT2 Transcriptional r 96.6 0.009 2E-07 53.5 7.7 80 104-240 109-194 (480)
176 KOG2253 U1 snRNP complex, subu 96.6 0.00014 3E-09 70.3 -4.0 120 5-132 39-158 (668)
177 PF03467 Smg4_UPF3: Smg-4/UPF3 96.5 0.0031 6.6E-08 52.7 4.0 80 3-82 4-97 (176)
178 PF07576 BRAP2: BRCA1-associat 96.4 0.028 6E-07 43.0 8.3 67 5-71 12-80 (110)
179 PF15023 DUF4523: Protein of u 96.4 0.02 4.3E-07 45.2 7.4 74 3-81 83-160 (166)
180 KOG1995 Conserved Zn-finger pr 96.1 0.012 2.7E-07 53.2 5.7 83 106-240 63-145 (351)
181 PF10309 DUF2414: Protein of u 95.7 0.064 1.4E-06 36.3 6.6 54 6-65 5-62 (62)
182 KOG0115 RNA-binding protein p5 95.7 0.011 2.4E-07 51.1 3.5 74 7-80 32-111 (275)
183 KOG2548 SWAP mRNA splicing reg 95.4 0.013 2.8E-07 55.5 3.3 11 324-334 460-470 (653)
184 PF05172 Nup35_RRM: Nup53/35/4 95.2 0.06 1.3E-06 40.4 5.7 28 211-239 54-81 (100)
185 PF03880 DbpA: DbpA RNA bindin 95.1 0.11 2.4E-06 36.7 6.7 59 16-80 11-74 (74)
186 KOG0835 Cyclin L [General func 95.1 0.026 5.6E-07 50.6 4.0 12 120-131 212-223 (367)
187 KOG1996 mRNA splicing factor [ 95.0 0.054 1.2E-06 47.8 5.5 28 213-240 331-358 (378)
188 KOG2135 Proteins containing th 94.9 0.019 4.1E-07 53.8 2.7 75 5-83 371-446 (526)
189 KOG0804 Cytoplasmic Zn-finger 94.8 0.087 1.9E-06 49.3 6.6 68 5-72 73-142 (493)
190 KOG2068 MOT2 transcription fac 94.7 0.013 2.8E-07 52.8 1.2 76 7-82 78-162 (327)
191 PF04847 Calcipressin: Calcipr 94.7 0.13 2.9E-06 43.2 7.1 62 19-83 8-71 (184)
192 KOG4285 Mitotic phosphoprotein 94.5 0.087 1.9E-06 46.7 5.6 71 7-82 198-269 (350)
193 KOG1847 mRNA splicing factor [ 94.1 0.033 7.1E-07 54.1 2.4 42 13-54 181-227 (878)
194 KOG2591 c-Mpl binding protein, 94.1 0.077 1.7E-06 50.8 4.8 68 5-76 174-245 (684)
195 KOG2202 U2 snRNP splicing fact 93.9 0.038 8.3E-07 47.9 2.3 30 211-240 110-139 (260)
196 KOG4849 mRNA cleavage factor I 93.5 0.073 1.6E-06 48.1 3.4 73 108-240 79-153 (498)
197 PF10309 DUF2414: Protein of u 93.5 0.62 1.3E-05 31.5 7.0 36 110-146 6-44 (62)
198 KOG2193 IGF-II mRNA-binding pr 93.2 0.0035 7.5E-08 57.7 -5.4 77 5-81 79-155 (584)
199 KOG4574 RNA-binding protein (c 92.8 0.071 1.5E-06 53.5 2.4 74 8-84 300-375 (1007)
200 KOG2891 Surface glycoprotein [ 92.7 0.11 2.4E-06 45.5 3.3 101 45-145 75-197 (445)
201 KOG2135 Proteins containing th 91.6 0.3 6.5E-06 46.1 4.8 53 14-70 205-257 (526)
202 PF08675 RNA_bind: RNA binding 91.5 0.62 1.3E-05 33.4 5.3 31 111-141 10-40 (87)
203 PF07292 NID: Nmi/IFP 35 domai 91.4 0.42 9.2E-06 34.8 4.6 73 48-131 1-74 (88)
204 KOG2416 Acinus (induces apopto 91.3 0.15 3.2E-06 49.4 2.6 35 105-139 440-475 (718)
205 KOG2591 c-Mpl binding protein, 91.1 0.99 2.2E-05 43.6 7.8 66 54-145 146-213 (684)
206 PF08952 DUF1866: Domain of un 90.5 1 2.2E-05 36.1 6.3 27 213-240 72-98 (146)
207 PF11767 SET_assoc: Histone ly 89.6 2.7 5.9E-05 28.9 7.0 55 17-77 11-65 (66)
208 PF14111 DUF4283: Domain of un 89.1 0.28 6.2E-06 39.7 2.3 119 9-144 18-140 (153)
209 KOG0796 Spliceosome subunit [R 88.9 0.07 1.5E-06 47.9 -1.5 22 186-207 194-215 (319)
210 KOG4410 5-formyltetrahydrofola 88.3 1 2.2E-05 39.8 5.2 48 6-55 330-377 (396)
211 KOG2318 Uncharacterized conser 87.5 3.1 6.7E-05 40.6 8.3 75 3-77 171-300 (650)
212 PF07576 BRAP2: BRCA1-associat 86.7 5.5 0.00012 30.4 7.8 28 213-240 56-83 (110)
213 PF03467 Smg4_UPF3: Smg-4/UPF3 85.9 1.6 3.5E-05 36.4 5.0 28 109-136 7-35 (176)
214 KOG2888 Putative RNA binding p 84.5 0.39 8.4E-06 43.2 0.7 10 121-130 140-149 (453)
215 KOG2068 MOT2 transcription fac 81.4 0.97 2.1E-05 41.0 2.0 74 110-240 78-154 (327)
216 PRK14548 50S ribosomal protein 81.0 6.5 0.00014 28.4 5.8 57 8-64 22-80 (84)
217 PF04847 Calcipressin: Calcipr 80.6 4.3 9.2E-05 34.2 5.5 28 213-240 33-62 (184)
218 TIGR03636 L23_arch archaeal ri 80.0 7.9 0.00017 27.5 5.9 56 8-63 15-72 (77)
219 PF10567 Nab6_mRNP_bdg: RNA-re 80.0 2.6 5.6E-05 37.6 4.1 77 5-81 14-106 (309)
220 PF15023 DUF4523: Protein of u 80.0 3.6 7.8E-05 32.7 4.5 21 213-233 127-147 (166)
221 KOG0804 Cytoplasmic Zn-finger 77.5 10 0.00022 36.0 7.3 70 109-240 74-144 (493)
222 KOG4285 Mitotic phosphoprotein 74.2 5.4 0.00012 35.8 4.4 63 109-239 197-259 (350)
223 PF03468 XS: XS domain; Inter 73.7 2.5 5.5E-05 32.6 2.1 50 8-57 10-68 (116)
224 KOG4574 RNA-binding protein (c 72.1 2.4 5.2E-05 43.2 2.0 73 111-251 300-372 (1007)
225 KOG0796 Spliceosome subunit [R 70.8 2.8 6.1E-05 37.9 2.0 12 50-61 26-37 (319)
226 KOG4019 Calcineurin-mediated s 70.0 4.6 9.9E-05 33.5 2.9 76 6-84 10-91 (193)
227 KOG2295 C2H2 Zn-finger protein 69.3 0.75 1.6E-05 44.3 -2.0 69 5-73 230-301 (648)
228 KOG3580 Tight junction protein 69.0 35 0.00075 33.9 8.9 44 103-146 55-99 (1027)
229 KOG1295 Nonsense-mediated deca 68.3 5.3 0.00012 37.0 3.2 67 5-71 6-78 (376)
230 smart00596 PRE_C2HC PRE_C2HC d 67.1 16 0.00034 25.3 4.6 59 21-82 2-64 (69)
231 KOG4483 Uncharacterized conser 66.9 9.6 0.00021 35.6 4.5 56 6-64 391-446 (528)
232 cd04908 ACT_Bt0572_1 N-termina 66.3 37 0.0008 22.8 7.0 48 19-68 14-62 (66)
233 KOG2891 Surface glycoprotein [ 65.0 7.1 0.00015 34.5 3.2 66 5-70 148-247 (445)
234 KOG2253 U1 snRNP complex, subu 63.7 6.2 0.00013 39.2 2.9 38 104-141 35-72 (668)
235 KOG2318 Uncharacterized conser 63.4 37 0.0008 33.5 7.9 40 106-145 171-215 (650)
236 PF07530 PRE_C2HC: Associated 63.2 23 0.0005 24.4 4.9 60 21-83 2-65 (68)
237 KOG4213 RNA-binding protein La 60.4 11 0.00023 31.3 3.3 54 7-64 112-169 (205)
238 KOG4410 5-formyltetrahydrofola 57.5 50 0.0011 29.5 7.1 34 102-135 323-356 (396)
239 PF14893 PNMA: PNMA 57.0 13 0.00028 34.4 3.6 55 1-55 13-72 (331)
240 cd04889 ACT_PDH-BS-like C-term 57.0 49 0.0011 21.1 5.7 43 20-62 12-55 (56)
241 PTZ00191 60S ribosomal protein 56.5 21 0.00046 28.6 4.3 54 8-61 83-138 (145)
242 PF15513 DUF4651: Domain of un 56.3 27 0.00058 23.6 4.1 19 21-39 9-27 (62)
243 PF11767 SET_assoc: Histone ly 55.7 52 0.0011 22.6 5.6 24 215-238 37-60 (66)
244 PF15230 SRRM_C: Serine/argini 48.0 32 0.00069 23.2 3.4 11 292-302 31-41 (66)
245 KOG4246 Predicted DNA-binding 46.7 7.5 0.00016 39.7 0.4 11 109-119 145-155 (1194)
246 PF02714 DUF221: Domain of unk 45.6 36 0.00078 31.2 4.8 32 48-81 1-32 (325)
247 PRK10629 EnvZ/OmpR regulon mod 44.3 1.5E+02 0.0034 23.2 7.7 72 5-81 34-109 (127)
248 PF07292 NID: Nmi/IFP 35 domai 44.0 13 0.00027 27.2 1.1 24 4-27 50-73 (88)
249 PF09707 Cas_Cas2CT1978: CRISP 43.8 48 0.001 24.1 4.1 49 5-53 24-72 (86)
250 PF03439 Spt5-NGN: Early trans 42.6 54 0.0012 23.5 4.3 35 32-68 33-67 (84)
251 KOG4008 rRNA processing protei 42.3 19 0.00042 31.2 2.1 34 5-38 39-72 (261)
252 COG0150 PurM Phosphoribosylami 40.8 8.2 0.00018 35.4 -0.3 50 18-68 273-322 (345)
253 CHL00123 rps6 ribosomal protei 40.4 87 0.0019 23.2 5.2 51 14-64 14-81 (97)
254 KOG4365 Uncharacterized conser 40.0 5.3 0.00011 37.7 -1.6 75 6-81 3-80 (572)
255 COG5638 Uncharacterized conser 39.2 1.1E+02 0.0023 29.0 6.5 70 3-72 143-285 (622)
256 COG0018 ArgS Arginyl-tRNA synt 38.9 2.5E+02 0.0055 28.3 9.7 97 20-144 60-165 (577)
257 PF03468 XS: XS domain; Inter 38.9 31 0.00066 26.6 2.7 58 110-167 9-75 (116)
258 PRK08559 nusG transcription an 38.6 1.1E+02 0.0024 24.7 6.0 33 33-67 36-68 (153)
259 PF12091 DUF3567: Protein of u 38.2 42 0.00091 24.2 3.0 18 118-135 59-76 (85)
260 PF08734 GYD: GYD domain; Int 36.6 1.6E+02 0.0034 21.5 6.1 43 21-64 23-66 (91)
261 COG0030 KsgA Dimethyladenosine 36.6 45 0.00097 29.7 3.7 33 7-39 96-128 (259)
262 KOG0156 Cytochrome P450 CYP2 s 35.4 73 0.0016 31.3 5.3 59 10-75 36-97 (489)
263 PF11411 DNA_ligase_IV: DNA li 33.1 33 0.00072 20.4 1.5 17 16-32 19-35 (36)
264 KOG4246 Predicted DNA-binding 32.8 20 0.00044 36.8 1.0 14 45-58 59-72 (1194)
265 KOG2187 tRNA uracil-5-methyltr 32.7 90 0.0019 30.6 5.2 41 44-84 62-102 (534)
266 PF08544 GHMP_kinases_C: GHMP 31.6 1.8E+02 0.0039 20.1 6.1 44 21-66 37-80 (85)
267 PRK05738 rplW 50S ribosomal pr 31.1 1.1E+02 0.0024 22.4 4.4 33 8-40 21-55 (92)
268 PF08442 ATP-grasp_2: ATP-gras 29.1 1.4E+02 0.0031 25.5 5.4 54 18-71 25-81 (202)
269 PRK11558 putative ssRNA endonu 29.0 89 0.0019 23.3 3.6 50 5-55 26-76 (97)
270 cd04879 ACT_3PGDH-like ACT_3PG 28.5 1.7E+02 0.0037 18.9 5.2 46 10-55 3-50 (71)
271 PF02829 3H: 3H domain; Inter 26.7 1.4E+02 0.0031 22.2 4.4 52 16-67 7-58 (98)
272 PRK11230 glycolate oxidase sub 26.6 1.9E+02 0.0041 28.5 6.6 48 19-66 202-255 (499)
273 cd04882 ACT_Bt0572_2 C-termina 26.2 1.9E+02 0.004 18.7 5.7 44 21-64 14-59 (65)
274 cd04883 ACT_AcuB C-terminal AC 26.1 2E+02 0.0044 19.1 6.8 50 19-69 14-67 (72)
275 KOG4483 Uncharacterized conser 25.6 1.5E+02 0.0033 28.0 5.1 35 110-144 392-427 (528)
276 COG0150 PurM Phosphoribosylami 24.9 35 0.00076 31.5 1.0 27 208-234 296-322 (345)
277 cd04909 ACT_PDH-BS C-terminal 24.7 2.2E+02 0.0047 18.9 5.5 47 19-65 14-62 (69)
278 PRK11634 ATP-dependent RNA hel 24.5 2.1E+02 0.0045 29.2 6.6 62 15-82 496-562 (629)
279 PRK09631 DNA topoisomerase IV 24.3 5.2E+02 0.011 26.4 9.1 96 6-133 220-319 (635)
280 COG5193 LHP1 La protein, small 24.2 37 0.00081 31.9 1.1 59 5-63 173-244 (438)
281 PF14111 DUF4283: Domain of un 23.0 90 0.0019 24.7 3.0 32 9-40 107-139 (153)
282 PF11823 DUF3343: Protein of u 22.3 1.1E+02 0.0024 21.1 3.0 29 46-74 2-30 (73)
283 cd04904 ACT_AAAH ACT domain of 22.3 2.7E+02 0.0058 19.1 5.3 49 19-67 13-65 (74)
284 TIGR00405 L26e_arch ribosomal 22.1 3.1E+02 0.0067 21.7 6.0 33 33-67 28-60 (145)
285 TIGR02542 B_forsyth_147 Bacter 22.0 3.4E+02 0.0073 20.9 5.6 24 14-39 11-34 (145)
286 KOG4019 Calcineurin-mediated s 21.8 66 0.0014 26.9 1.9 27 213-239 53-79 (193)
287 PF15063 TC1: Thyroid cancer p 21.7 59 0.0013 22.9 1.4 26 8-33 27-52 (79)
288 PF01071 GARS_A: Phosphoribosy 21.4 1.9E+02 0.0042 24.5 4.8 48 18-66 24-71 (194)
289 TIGR01873 cas_CT1978 CRISPR-as 21.4 1.5E+02 0.0032 21.6 3.5 49 5-54 24-74 (87)
290 PF00276 Ribosomal_L23: Riboso 21.2 2E+02 0.0044 20.9 4.3 51 8-58 21-86 (91)
291 KOG3702 Nuclear polyadenylated 20.5 56 0.0012 32.8 1.5 71 7-78 512-585 (681)
292 PTZ00338 dimethyladenosine tra 20.2 1E+02 0.0022 28.1 3.0 26 8-33 103-128 (294)
293 PF00398 RrnaAD: Ribosomal RNA 20.2 79 0.0017 28.0 2.3 28 6-33 97-126 (262)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.98 E-value=1.7e-31 Score=245.22 Aligned_cols=165 Identities=26% Similarity=0.363 Sum_probs=142.8
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~ 80 (341)
...++|||+|||+++|+++|+++|+.||+|++|+|+. +++++|||||+|.++++|++||+.|||..|.+++|+|.++
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 3678999999999999999999999999999999964 6788999999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhccccc
Q 019418 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEV 160 (341)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~ 160 (341)
.+... .....+|||+|||..+++++|+++|.+||+|+.+.|+.+..
T Consensus 185 ~p~~~--------------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~-------------- 230 (346)
T TIGR01659 185 RPGGE--------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKL-------------- 230 (346)
T ss_pred ccccc--------------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCC--------------
Confidence 65321 11236899999999999999999999999999999998764
Q ss_pred chhhhHhhhhccCCCCccccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCcccccccc
Q 019418 161 NWGEIREAGRILGGGMFSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 240 (341)
Q Consensus 161 ~~~~~~~ag~~~g~~~~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~ 240 (341)
+++. +++|||+|.+.++|++||+.||+..+.+..
T Consensus 231 -------tg~~---------------------------------------kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~ 264 (346)
T TIGR01659 231 -------TGTP---------------------------------------RGVAFVRFNKREEAQEAISALNNVIPEGGS 264 (346)
T ss_pred -------CCcc---------------------------------------ceEEEEEECCHHHHHHHHHHhCCCccCCCc
Confidence 2333 569999999999999999999999998854
Q ss_pred ccceEEEeec
Q 019418 241 SRSYVRVREY 250 (341)
Q Consensus 241 ~~~~~~~~~~ 250 (341)
..+.|...
T Consensus 265 --~~l~V~~a 272 (346)
T TIGR01659 265 --QPLTVRLA 272 (346)
T ss_pred --eeEEEEEC
Confidence 33444433
No 2
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=1.4e-30 Score=208.05 Aligned_cols=186 Identities=60% Similarity=1.026 Sum_probs=160.5
Q ss_pred CCCCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 019418 1 MSSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (341)
Q Consensus 1 m~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~ 80 (341)
|+.+.+++|||+|||.+|-+.+|++||.+||.|.+|.|+....+.+||||+|+++.+|+.||..-+|..++|..|.|+++
T Consensus 1 ~~gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 1 MSGRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred CCCcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 88899999999999999999999999999999999999987777899999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCC------CCCCCCCCCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhh
Q 019418 81 HGGRRHSSSMDRYSS------YSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLR 154 (341)
Q Consensus 81 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~ 154 (341)
.............++ ...+...++.......|.|.+||+..+||+|++.+.+.|+|.+.++.++.
T Consensus 81 rggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rDg--------- 151 (241)
T KOG0105|consen 81 RGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRDG--------- 151 (241)
T ss_pred cCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeeccc---------
Confidence 876533222221111 11122456778889999999999999999999999999999999998874
Q ss_pred hcccccchhhhHhhhhccCCCCccccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCcc
Q 019418 155 FWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRS 234 (341)
Q Consensus 155 ~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~ 234 (341)
+|+|+|..+++++.|+.+|+..
T Consensus 152 ----------------------------------------------------------~GvV~~~r~eDMkYAvr~ld~~ 173 (241)
T KOG0105|consen 152 ----------------------------------------------------------VGVVEYLRKEDMKYAVRKLDDQ 173 (241)
T ss_pred ----------------------------------------------------------ceeeeeeehhhHHHHHHhhccc
Confidence 5999999999999999999999
Q ss_pred ccccccccceEEEeeccCC
Q 019418 235 EFRNAFSRSYVRVREYDSR 253 (341)
Q Consensus 235 ~~~g~~~~~~~~~~~~~~~ 253 (341)
.+..-....+|++.....+
T Consensus 174 ~~~seGe~~yirv~~~~~~ 192 (241)
T KOG0105|consen 174 KFRSEGETAYIRVRGDENR 192 (241)
T ss_pred cccCcCcEeeEEecccCCC
Confidence 8887557788888776554
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=5.1e-30 Score=239.51 Aligned_cols=122 Identities=24% Similarity=0.394 Sum_probs=110.0
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~ 81 (341)
+.++|||+|||.++|+++|+++|+.||+|.+|+|+. +++++|||||+|.++++|++||+.|||..|.|+.|.|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 578999999999999999999999999999999964 67899999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCc
Q 019418 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG 146 (341)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~ 146 (341)
+... .....+|||+|||..+++++|+++|.+||.|..+.+..+..
T Consensus 82 ~~~~--------------------~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~ 126 (352)
T TIGR01661 82 PSSD--------------------SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNV 126 (352)
T ss_pred cccc--------------------ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCC
Confidence 5321 11235899999999999999999999999999999987653
No 4
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.97 E-value=5.3e-29 Score=240.20 Aligned_cols=174 Identities=20% Similarity=0.303 Sum_probs=144.6
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~ 81 (341)
..++|||+|||+++|+++|+++|.+||+|.+|+|+. +++++|||||+|.++++|+.||+.|||..|+|+.|.|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 468999999999999999999999999999999965 68899999999999999999999999999999999998654
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccc
Q 019418 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVN 161 (341)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~ 161 (341)
......... ...........+|||+|||.++++++|+++|+.||.|..+.|..+..
T Consensus 186 ~~p~a~~~~---------~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~--------------- 241 (612)
T TIGR01645 186 NMPQAQPII---------DMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPT--------------- 241 (612)
T ss_pred ccccccccc---------ccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCC---------------
Confidence 322110000 00011222346899999999999999999999999999999998865
Q ss_pred hhhhHhhhhccCCCCccccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccc
Q 019418 162 WGEIREAGRILGGGMFSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 241 (341)
Q Consensus 162 ~~~~~~ag~~~g~~~~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~ 241 (341)
++.. +|||||+|.+.++|.+||..||+..++|
T Consensus 242 ------tgks---------------------------------------KGfGFVeFe~~e~A~kAI~amNg~elgG--- 273 (612)
T TIGR01645 242 ------GRGH---------------------------------------KGYGFIEYNNLQSQSEAIASMNLFDLGG--- 273 (612)
T ss_pred ------CCCc---------------------------------------CCeEEEEECCHHHHHHHHHHhCCCeeCC---
Confidence 2222 6799999999999999999999999999
Q ss_pred cceEEEeecc
Q 019418 242 RSYVRVREYD 251 (341)
Q Consensus 242 ~~~~~~~~~~ 251 (341)
..++|...-
T Consensus 274 -r~LrV~kAi 282 (612)
T TIGR01645 274 -QYLRVGKCV 282 (612)
T ss_pred -eEEEEEecC
Confidence 567775443
No 5
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=3.8e-28 Score=218.00 Aligned_cols=214 Identities=19% Similarity=0.300 Sum_probs=164.9
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeC-CeEEEEEEc
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD-GYRLRVELA 80 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~-g~~l~v~~~ 80 (341)
-.|.||||.||.++.|++|..||++.|+|.+++|++ +|.++|||||.|.+.++|++||+.||+.+|. |+.|.|..+
T Consensus 82 ~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~S 161 (506)
T KOG0117|consen 82 RGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVS 161 (506)
T ss_pred CCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEe
Confidence 368999999999999999999999999999999977 5899999999999999999999999999995 999999887
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCC-eeEEEEeeCCch----hhhhhhhh
Q 019418 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGD-VCFSQVFRDRGE----LHWRMLRF 155 (341)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~-i~~~~i~~~~~~----~~~~~~~~ 155 (341)
... ++|||+|||..+++++|.+.|++.++ |++|.++..+.+ .+||+++|
T Consensus 162 van--------------------------~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveY 215 (506)
T KOG0117|consen 162 VAN--------------------------CRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEY 215 (506)
T ss_pred eec--------------------------ceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEe
Confidence 653 69999999999999999999999994 888888876543 23666655
Q ss_pred cccccchhhhHhh-hhccCCC-----------------CccccccceeEEEEeecchhh-----HHhhhcc---cccccC
Q 019418 156 WGGEVNWGEIREA-GRILGGG-----------------MFSCLYRFRIFFIYFKCMRLS-----YFKHFRE---SYHNIF 209 (341)
Q Consensus 156 ~~~~~~~~~~~~a-g~~~g~~-----------------~~~~~~~~~~~fi~~~~~~~s-----~~~~~~~---~~~~~~ 209 (341)
.... .+..+ .+...|. ......+..+--+|+.|++.+ |..+|+. --.-..
T Consensus 216 e~H~----~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk 291 (506)
T KOG0117|consen 216 ESHR----AAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKK 291 (506)
T ss_pred ecch----hHHHHHhhccCCceeecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeec
Confidence 5331 11111 1111110 111224455566789999887 5555554 111112
Q ss_pred CCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccC
Q 019418 210 AGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 252 (341)
Q Consensus 210 ~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~ 252 (341)
-+.+|||.|.+.++|.+|++.+||++|+| ..|.+...+.
T Consensus 292 ~rDYaFVHf~eR~davkAm~~~ngkeldG----~~iEvtLAKP 330 (506)
T KOG0117|consen 292 PRDYAFVHFAEREDAVKAMKETNGKELDG----SPIEVTLAKP 330 (506)
T ss_pred ccceeEEeecchHHHHHHHHHhcCceecC----ceEEEEecCC
Confidence 26699999999999999999999999999 5566655544
No 6
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=2.3e-28 Score=206.50 Aligned_cols=171 Identities=19% Similarity=0.311 Sum_probs=146.2
Q ss_pred EEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccCCC
Q 019418 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 84 (341)
Q Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~~ 84 (341)
-|||+.|...++-++|++.|.+||+|.+++|+. |++++||+||.|.+.++|++||+.|||+.|.++.|+-.|+..+.
T Consensus 64 hvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 64 HVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKP 143 (321)
T ss_pred eEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCc
Confidence 589999999999999999999999999999965 78999999999999999999999999999999999999997655
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhh
Q 019418 85 RHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGE 164 (341)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 164 (341)
....... ..=+.-........++|||+|++..+++++|++.|.+||.|.+|++.++..
T Consensus 144 ~e~n~~~----ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~qG------------------ 201 (321)
T KOG0148|consen 144 SEMNGKP----LTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQG------------------ 201 (321)
T ss_pred cccCCCC----ccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecccc------------------
Confidence 2111000 000011223445668999999999999999999999999999999998855
Q ss_pred hHhhhhccCCCCccccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccce
Q 019418 165 IREAGRILGGGMFSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 244 (341)
Q Consensus 165 ~~~ag~~~g~~~~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~ 244 (341)
++||.|+++|.|.+||..+|++++.|+.++++
T Consensus 202 ------------------------------------------------YaFVrF~tkEaAahAIv~mNntei~G~~VkCs 233 (321)
T KOG0148|consen 202 ------------------------------------------------YAFVRFETKEAAAHAIVQMNNTEIGGQLVRCS 233 (321)
T ss_pred ------------------------------------------------eEEEEecchhhHHHHHHHhcCceeCceEEEEe
Confidence 99999999999999999999999999887777
Q ss_pred EEEe
Q 019418 245 VRVR 248 (341)
Q Consensus 245 ~~~~ 248 (341)
..-.
T Consensus 234 WGKe 237 (321)
T KOG0148|consen 234 WGKE 237 (321)
T ss_pred cccc
Confidence 6543
No 7
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.95 E-value=4.6e-27 Score=232.34 Aligned_cols=207 Identities=20% Similarity=0.270 Sum_probs=156.2
Q ss_pred EEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccCCC
Q 019418 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 84 (341)
Q Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~~ 84 (341)
+|||+|||+++||++|.++|++||+|.+|+|.. +++++|||||+|.+.++|++||+.||+..|.|+.|+|.|+....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 799999999999999999999999999999965 57889999999999999999999999999999999999976432
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhh
Q 019418 85 RHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGE 164 (341)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 164 (341)
.. ......+|||+|||.++++++|+++|.+||.|..|.+..+... ..-+.++|+|++
T Consensus 82 ~~------------------~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g-----~skg~afV~F~~ 138 (562)
T TIGR01628 82 SL------------------RRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENG-----KSRGYGFVHFEK 138 (562)
T ss_pred cc------------------cccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCC-----CcccEEEEEECC
Confidence 11 1112357999999999999999999999999999999887541 112234556633
Q ss_pred hHhhh--------hccCCCCcc-----------ccccceeEEEEeecchhh-----HHhhhcc----------cccccCC
Q 019418 165 IREAG--------RILGGGMFS-----------CLYRFRIFFIYFKCMRLS-----YFKHFRE----------SYHNIFA 210 (341)
Q Consensus 165 ~~~ag--------~~~g~~~~~-----------~~~~~~~~fi~~~~~~~s-----~~~~~~~----------~~~~~~~ 210 (341)
..+|. ....+.... ......+.-|++.+++.+ |.++|.. .......
T Consensus 139 ~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~ 218 (562)
T TIGR01628 139 EESAKAAIQKVNGMLLNDKEVYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRS 218 (562)
T ss_pred HHHHHHHHHHhcccEecCceEEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCc
Confidence 33321 111111100 001122344777888766 5555543 2234456
Q ss_pred CceEEEEecChhhHHHHHHhcCccccc
Q 019418 211 GMTGIVDYTSYDDMKYAIRKLDRSEFR 237 (341)
Q Consensus 211 ~~~gfV~f~~~~~a~~Ai~~l~g~~~~ 237 (341)
+++|||+|.+.++|.+|++.|||..+.
T Consensus 219 ~G~afV~F~~~e~A~~Av~~l~g~~i~ 245 (562)
T TIGR01628 219 RGFAFVNFEKHEDAAKAVEEMNGKKIG 245 (562)
T ss_pred ccEEEEEECCHHHHHHHHHHhCCcEec
Confidence 789999999999999999999999998
No 8
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.95 E-value=8.2e-27 Score=225.29 Aligned_cols=175 Identities=21% Similarity=0.291 Sum_probs=144.1
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~ 79 (341)
+++.++|||+|||.++|+++|.++|++||+|.+|.|+. ++.++|||||+|.+.++|++||. |+|..|.|++|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 35688999999999999999999999999999999965 57889999999999999999997 899999999999998
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccc
Q 019418 80 AHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGE 159 (341)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~ 159 (341)
+............. .........+|||+|||..+++++|+++|.+||.|..+.|..+..
T Consensus 165 ~~~~~~~~~~~~~~--------~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~------------- 223 (457)
T TIGR01622 165 SQAEKNRAAKAATH--------QPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPE------------- 223 (457)
T ss_pred cchhhhhhhhcccc--------cCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCC-------------
Confidence 75433221110000 000112257899999999999999999999999999999998765
Q ss_pred cchhhhHhhhhccCCCCccccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccc
Q 019418 160 VNWGEIREAGRILGGGMFSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 239 (341)
Q Consensus 160 ~~~~~~~~ag~~~g~~~~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~ 239 (341)
+|.+ +++|||+|.+.++|..|+..|||..+.|
T Consensus 224 --------~g~~---------------------------------------~g~afV~f~~~e~A~~A~~~l~g~~i~g- 255 (457)
T TIGR01622 224 --------TGRS---------------------------------------KGFGFIQFHDAEEAKEALEVMNGFELAG- 255 (457)
T ss_pred --------CCcc---------------------------------------ceEEEEEECCHHHHHHHHHhcCCcEECC-
Confidence 2222 5699999999999999999999999999
Q ss_pred cccceEEEeec
Q 019418 240 FSRSYVRVREY 250 (341)
Q Consensus 240 ~~~~~~~~~~~ 250 (341)
..|.|...
T Consensus 256 ---~~i~v~~a 263 (457)
T TIGR01622 256 ---RPIKVGYA 263 (457)
T ss_pred ---EEEEEEEc
Confidence 45666553
No 9
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.95 E-value=1.7e-26 Score=228.41 Aligned_cols=222 Identities=18% Similarity=0.236 Sum_probs=163.9
Q ss_pred CCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec--CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccCC
Q 019418 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (341)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~--~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~ 83 (341)
..+|||+|||.++|+++|+++|+.||+|..|+|.. ++.++|||||+|.++++|++|++.|||..+.|+.|.|......
T Consensus 88 ~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~ 167 (562)
T TIGR01628 88 VGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKK 167 (562)
T ss_pred CCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccccc
Confidence 46899999999999999999999999999999966 5678999999999999999999999999999999999876543
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchh
Q 019418 84 RRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWG 163 (341)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~ 163 (341)
.... ........+|||+|||.++++++|+++|.+||+|..+.+..+.... .-+.++|+|.
T Consensus 168 ~~~~---------------~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~-----~~G~afV~F~ 227 (562)
T TIGR01628 168 HERE---------------AAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGR-----SRGFAFVNFE 227 (562)
T ss_pred cccc---------------cccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCC-----cccEEEEEEC
Confidence 3221 0122334689999999999999999999999999999998875411 1122344443
Q ss_pred hhHhh--------hhccC----CCCccc------------------------cccceeEEEEeecchhh-----HHhhhc
Q 019418 164 EIREA--------GRILG----GGMFSC------------------------LYRFRIFFIYFKCMRLS-----YFKHFR 202 (341)
Q Consensus 164 ~~~~a--------g~~~g----~~~~~~------------------------~~~~~~~fi~~~~~~~s-----~~~~~~ 202 (341)
+..+| |.... |..... ......+-|++.+++.. |.++|.
T Consensus 228 ~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~ 307 (562)
T TIGR01628 228 KHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFS 307 (562)
T ss_pred CHHHHHHHHHHhCCcEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHH
Confidence 32222 22222 110000 00122345788888776 666665
Q ss_pred c----------cccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeecc
Q 019418 203 E----------SYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 251 (341)
Q Consensus 203 ~----------~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~ 251 (341)
. .......+++|||+|.+.++|.+|+..|||..++| ..+.|....
T Consensus 308 ~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~g----k~l~V~~a~ 362 (562)
T TIGR01628 308 ECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGG----KPLYVALAQ 362 (562)
T ss_pred hcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCC----ceeEEEecc
Confidence 4 22344567999999999999999999999999999 445554443
No 10
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.94 E-value=5.8e-26 Score=218.96 Aligned_cols=214 Identities=20% Similarity=0.330 Sum_probs=152.7
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec--CCCCCcEEEEEEcCHHHHHHHHHhcCCceeC-CeEEEEEEcc
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD-GYRLRVELAH 81 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~--~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~-g~~l~v~~~~ 81 (341)
..++|||+|||++++|++|.++|++||+|.+|+|+. ++.++|||||+|.++++|++||+.||+..|. |+.|.|..+.
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~ 136 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV 136 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc
Confidence 468999999999999999999999999999999976 5889999999999999999999999999985 7887776653
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCC-eeEEEEeeCC----chhhhhhhhhc
Q 019418 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGD-VCFSQVFRDR----GELHWRMLRFW 156 (341)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~-i~~~~i~~~~----~~~~~~~~~~~ 156 (341)
. ..+|||+|||.++++++|.++|.++++ ++.+.+.... ...++++++|.
T Consensus 137 ~--------------------------~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~ 190 (578)
T TIGR01648 137 D--------------------------NCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYE 190 (578)
T ss_pred c--------------------------CceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcC
Confidence 2 158999999999999999999999974 4444443221 11234444443
Q ss_pred ccccchhhhHhhh-hcc------CCCCccc-----------cccceeEEEEeecchhh-----HHhhhccc----cc-cc
Q 019418 157 GGEVNWGEIREAG-RIL------GGGMFSC-----------LYRFRIFFIYFKCMRLS-----YFKHFRES----YH-NI 208 (341)
Q Consensus 157 ~~~~~~~~~~~ag-~~~------g~~~~~~-----------~~~~~~~fi~~~~~~~s-----~~~~~~~~----~~-~~ 208 (341)
.. +++..|- ... .+....+ ..+....-|++.+++.+ |.++|..- .. ..
T Consensus 191 s~----edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~ 266 (578)
T TIGR01648 191 SH----RAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVK 266 (578)
T ss_pred CH----HHHHHHHHHhhccceEecCceEEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEE
Confidence 22 1121111 110 1110000 01112234777777766 66666532 11 11
Q ss_pred CCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccC
Q 019418 209 FAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 252 (341)
Q Consensus 209 ~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~ 252 (341)
..+++|||+|.+.++|++|++.||+.+|.| ..|.|.....
T Consensus 267 ~~rgfAFVeF~s~e~A~kAi~~lnG~~i~G----r~I~V~~Akp 306 (578)
T TIGR01648 267 KIRDYAFVHFEDREDAVKAMDELNGKELEG----SEIEVTLAKP 306 (578)
T ss_pred eecCeEEEEeCCHHHHHHHHHHhCCCEECC----EEEEEEEccC
Confidence 235799999999999999999999999999 5677765544
No 11
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.94 E-value=3.6e-25 Score=214.11 Aligned_cols=160 Identities=18% Similarity=0.193 Sum_probs=133.1
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhc--CCceeCCeEEEEEEccC
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGR--DGYNFDGYRLRVELAHG 82 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~l--ng~~i~g~~l~v~~~~~ 82 (341)
++++|||+|||+++|+++|.++|++||+|..|.|+. .++||||+|.+.++|++||+.| ++..|.|++|.|.++..
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~---~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~ 77 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP---GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTS 77 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC---CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCC
Confidence 589999999999999999999999999999999974 4789999999999999999864 78999999999999875
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccch
Q 019418 83 GRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNW 162 (341)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~ 162 (341)
........ .. ..........+|+|.||+..+++++|+++|.+||+|..+.|..+..
T Consensus 78 ~~~~~~~~---~~-----~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~---------------- 133 (481)
T TIGR01649 78 QEIKRDGN---SD-----FDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN---------------- 133 (481)
T ss_pred cccccCCC---Cc-----ccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----------------
Confidence 43111100 00 0001122335799999999999999999999999999999876544
Q ss_pred hhhHhhhhccCCCCccccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccc
Q 019418 163 GEIREAGRILGGGMFSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 239 (341)
Q Consensus 163 ~~~~~ag~~~g~~~~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~ 239 (341)
.++|||+|.+.++|.+|++.|||..+.|.
T Consensus 134 ------------------------------------------------~~~afVef~~~~~A~~A~~~Lng~~i~~~ 162 (481)
T TIGR01649 134 ------------------------------------------------VFQALVEFESVNSAQHAKAALNGADIYNG 162 (481)
T ss_pred ------------------------------------------------ceEEEEEECCHHHHHHHHHHhcCCcccCC
Confidence 35899999999999999999999999764
No 12
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.94 E-value=6.2e-25 Score=212.47 Aligned_cols=172 Identities=20% Similarity=0.251 Sum_probs=135.8
Q ss_pred CCCEEEeCCCCC-CCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccCC
Q 019418 5 SSRTLYVGNLPG-DTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (341)
Q Consensus 5 ~~~~l~V~nLp~-~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~ 83 (341)
++++|||+|||+ .+|+++|.++|+.||+|..|+|+.+ .+|||||+|.+.++|+.||..|||..|.|++|.|.+++..
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~--~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN--KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQ 351 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccc
Confidence 678999999998 6999999999999999999999764 3799999999999999999999999999999999998654
Q ss_pred CCCCCCCC-----C--CCCCCCC--CCCC--------CCCCCcceeeeeCCCCCCCHHHHHHHHHHhCC--eeEEEEeeC
Q 019418 84 RRHSSSMD-----R--YSSYSSG--GSRG--------VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGD--VCFSQVFRD 144 (341)
Q Consensus 84 ~~~~~~~~-----~--~~~~~~~--~~~~--------~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~--i~~~~i~~~ 144 (341)
........ . ...+... .+.. ....+..+|||.|||..+++++|+++|.+||. |..+.+...
T Consensus 352 ~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~ 431 (481)
T TIGR01649 352 NVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPK 431 (481)
T ss_pred cccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecC
Confidence 32111000 0 0111110 0000 01234568999999999999999999999998 777777544
Q ss_pred CchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhH
Q 019418 145 RGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDM 224 (341)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a 224 (341)
.. ..+++|||+|.+.++|
T Consensus 432 ~~--------------------------------------------------------------~~~~~gfVeF~~~e~A 449 (481)
T TIGR01649 432 DN--------------------------------------------------------------ERSKMGLLEWESVEDA 449 (481)
T ss_pred CC--------------------------------------------------------------CcceeEEEEcCCHHHH
Confidence 32 0146999999999999
Q ss_pred HHHHHhcCcccccccc
Q 019418 225 KYAIRKLDRSEFRNAF 240 (341)
Q Consensus 225 ~~Ai~~l~g~~~~g~~ 240 (341)
.+|+..||+..+.++.
T Consensus 450 ~~Al~~ln~~~l~~~~ 465 (481)
T TIGR01649 450 VEALIALNHHQLNEPN 465 (481)
T ss_pred HHHHHHhcCCccCCCC
Confidence 9999999999999864
No 13
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.93 E-value=4.4e-26 Score=194.51 Aligned_cols=139 Identities=29% Similarity=0.560 Sum_probs=130.4
Q ss_pred CEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccCCCCC
Q 019418 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRH 86 (341)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~~~~ 86 (341)
-+|||||||.++++.+|+.+|++||+|++|.|+ ++||||..++...|+.||..|||..|+|..|.|+.++.+.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv-----KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk- 76 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV-----KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSK- 76 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee-----cccceEEeecccccHHHHhhcccceecceEEEEEeccccCC-
Confidence 379999999999999999999999999999999 78999999999999999999999999999999999987532
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhH
Q 019418 87 SSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIR 166 (341)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (341)
..++|+|+||.+.++.++|+..|.+||.|+.|+|+++
T Consensus 77 ---------------------~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd---------------------- 113 (346)
T KOG0109|consen 77 ---------------------ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD---------------------- 113 (346)
T ss_pred ---------------------CccccccCCCCccccCHHHhhhhcccCCceeeeeecc----------------------
Confidence 2268999999999999999999999999999999854
Q ss_pred hhhhccCCCCccccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCcccccccc
Q 019418 167 EAGRILGGGMFSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 240 (341)
Q Consensus 167 ~ag~~~g~~~~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~ 240 (341)
++||.|+-.++|..||+.||++++.|+.
T Consensus 114 ----------------------------------------------y~fvh~d~~eda~~air~l~~~~~~gk~ 141 (346)
T KOG0109|consen 114 ----------------------------------------------YAFVHFDRAEDAVEAIRGLDNTEFQGKR 141 (346)
T ss_pred ----------------------------------------------eeEEEEeeccchHHHHhcccccccccce
Confidence 8999999999999999999999999965
No 14
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.93 E-value=6.9e-25 Score=214.70 Aligned_cols=173 Identities=19% Similarity=0.271 Sum_probs=132.7
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhcc------------CCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCcee
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKY------------GPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNF 70 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~------------G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i 70 (341)
+...++|||+|||+++|+++|.++|.+| +.|..+.+. ..+|||||+|.+.++|..||+ |||..|
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~---~~kg~afVeF~~~e~A~~Al~-l~g~~~ 247 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN---KEKNFAFLEFRTVEEATFAMA-LDSIIY 247 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC---CCCCEEEEEeCCHHHHhhhhc-CCCeEe
Confidence 3567899999999999999999999975 345555443 458999999999999999995 999999
Q ss_pred CCeEEEEEEccCCCCCCCCCC-----CCCCCCC----CCCCCCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEE
Q 019418 71 DGYRLRVELAHGGRRHSSSMD-----RYSSYSS----GGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQV 141 (341)
Q Consensus 71 ~g~~l~v~~~~~~~~~~~~~~-----~~~~~~~----~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i 141 (341)
.|+.|.|.........+.... ....... ............+|||+|||..+++++|+++|.+||.|..+.|
T Consensus 248 ~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~ 327 (509)
T TIGR01642 248 SNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNL 327 (509)
T ss_pred eCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE
Confidence 999999986554321111000 0000000 0011122344579999999999999999999999999999999
Q ss_pred eeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecCh
Q 019418 142 FRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSY 221 (341)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~ 221 (341)
+.+.. +|.+ +|+|||+|.+.
T Consensus 328 ~~~~~---------------------~g~~---------------------------------------~g~afv~f~~~ 347 (509)
T TIGR01642 328 IKDIA---------------------TGLS---------------------------------------KGYAFCEYKDP 347 (509)
T ss_pred EecCC---------------------CCCc---------------------------------------CeEEEEEECCH
Confidence 88754 2322 57999999999
Q ss_pred hhHHHHHHhcCccccccc
Q 019418 222 DDMKYAIRKLDRSEFRNA 239 (341)
Q Consensus 222 ~~a~~Ai~~l~g~~~~g~ 239 (341)
++|..||..|||..+.|+
T Consensus 348 ~~a~~A~~~l~g~~~~~~ 365 (509)
T TIGR01642 348 SVTDVAIAALNGKDTGDN 365 (509)
T ss_pred HHHHHHHHHcCCCEECCe
Confidence 999999999999999994
No 15
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=1.6e-25 Score=200.33 Aligned_cols=168 Identities=20% Similarity=0.360 Sum_probs=142.9
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCcee---CCeEEEEE
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNF---DGYRLRVE 78 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i---~g~~l~v~ 78 (341)
+.-+|||+-||..++|.||+++|++||.|.+|.|.. ++.++|||||.|.+.++|.+|+.+|+++.. +..+|.|+
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 456899999999999999999999999999999965 789999999999999999999999998664 35789999
Q ss_pred EccCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhccc
Q 019418 79 LAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGG 158 (341)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~ 158 (341)
++...... ...+.+|||+-|+..+++.+++++|.+||.|++|.|.++..
T Consensus 113 ~Ad~E~er-------------------~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~------------ 161 (510)
T KOG0144|consen 113 YADGERER-------------------IVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD------------ 161 (510)
T ss_pred ccchhhhc-------------------cccchhhhhhhccccccHHHHHHHHHhhCccchhhheeccc------------
Confidence 99865432 12347899999999999999999999999999999999987
Q ss_pred ccchhhhHhhhhccCCCCccccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCcc-ccc
Q 019418 159 EVNWGEIREAGRILGGGMFSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRS-EFR 237 (341)
Q Consensus 159 ~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~-~~~ 237 (341)
+.+ +|++||+|.+.+.|..||+.|||. .+.
T Consensus 162 ----------~~s---------------------------------------RGcaFV~fstke~A~~Aika~ng~~tme 192 (510)
T KOG0144|consen 162 ----------GLS---------------------------------------RGCAFVKFSTKEMAVAAIKALNGTQTME 192 (510)
T ss_pred ----------ccc---------------------------------------cceeEEEEehHHHHHHHHHhhccceeec
Confidence 444 569999999999999999999997 566
Q ss_pred cccccceEEEeeccCCC
Q 019418 238 NAFSRSYVRVREYDSRR 254 (341)
Q Consensus 238 g~~~~~~~~~~~~~~~r 254 (341)
|-. .++-|...|..+
T Consensus 193 Gcs--~PLVVkFADtqk 207 (510)
T KOG0144|consen 193 GCS--QPLVVKFADTQK 207 (510)
T ss_pred cCC--CceEEEecccCC
Confidence 755 445555554443
No 16
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=3.1e-25 Score=186.47 Aligned_cols=163 Identities=23% Similarity=0.344 Sum_probs=143.4
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~ 80 (341)
...++|.|.-||.++|+|||+.+|...|+|++|+++. +|++.||+||.|.++++|++||..|||..+..+.|+|.++
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 4567899999999999999999999999999999955 7999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhccccc
Q 019418 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEV 160 (341)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~ 160 (341)
.+... .-.+..|||.+||..++..||+++|.+||.|.-.+|..|.-
T Consensus 119 RPSs~--------------------~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqv-------------- 164 (360)
T KOG0145|consen 119 RPSSD--------------------SIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQV-------------- 164 (360)
T ss_pred cCChh--------------------hhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcc--------------
Confidence 86432 22346899999999999999999999999998888887765
Q ss_pred chhhhHhhhhccCCCCccccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCcccccccc
Q 019418 161 NWGEIREAGRILGGGMFSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 240 (341)
Q Consensus 161 ~~~~~~~ag~~~g~~~~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~ 240 (341)
+|.+ +|+|||.|+..++|++||+.|||..--|..
T Consensus 165 -------tg~s---------------------------------------rGVgFiRFDKr~EAe~AIk~lNG~~P~g~t 198 (360)
T KOG0145|consen 165 -------TGLS---------------------------------------RGVGFIRFDKRIEAEEAIKGLNGQKPSGCT 198 (360)
T ss_pred -------ccee---------------------------------------cceeEEEecchhHHHHHHHhccCCCCCCCC
Confidence 3444 569999999999999999999999988866
Q ss_pred ccceEE
Q 019418 241 SRSYVR 246 (341)
Q Consensus 241 ~~~~~~ 246 (341)
...-+.
T Consensus 199 epItVK 204 (360)
T KOG0145|consen 199 EPITVK 204 (360)
T ss_pred CCeEEE
Confidence 333333
No 17
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.93 E-value=2.5e-24 Score=210.73 Aligned_cols=185 Identities=19% Similarity=0.287 Sum_probs=138.5
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~ 81 (341)
+.++|||+|||..+|+++|.++|+.||.|..|.|+. +|.++|||||+|.+.++|+.||+.|||..|.|+.|.|.++.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 457999999999999999999999999999999854 68899999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCC----CCCCCC----CCCCCCCCcceeeeeCCCCCC----------CHHHHHHHHHHhCCeeEEEEee
Q 019418 82 GGRRHSSSMDRYS----SYSSGG----SRGVSRRSDYRVLVTGLPSSA----------SWQDLKDHMRRAGDVCFSQVFR 143 (341)
Q Consensus 82 ~~~~~~~~~~~~~----~~~~~~----~~~~~~~~~~~l~V~nlp~~~----------~~~~l~~~f~~~G~i~~~~i~~ 143 (341)
............. ...... .......+...|+|.||.... ..++|+++|.+||.|+.|.|+.
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~ 453 (509)
T TIGR01642 374 VGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPR 453 (509)
T ss_pred cCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeec
Confidence 5433221111000 000000 001112345678999986431 1367999999999999999987
Q ss_pred CCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhh
Q 019418 144 DRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDD 223 (341)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~ 223 (341)
+..+ + ....+.|++||+|.+.++
T Consensus 454 ~~~~---------------------~------------------------------------~~~~~~G~~fV~F~~~e~ 476 (509)
T TIGR01642 454 PNGD---------------------R------------------------------------NSTPGVGKVFLEYADVRS 476 (509)
T ss_pred cCcC---------------------C------------------------------------CcCCCcceEEEEECCHHH
Confidence 5320 0 001124689999999999
Q ss_pred HHHHHHhcCccccccccccceEEEeec
Q 019418 224 MKYAIRKLDRSEFRNAFSRSYVRVREY 250 (341)
Q Consensus 224 a~~Ai~~l~g~~~~g~~~~~~~~~~~~ 250 (341)
|++||..|||..|+| ..|.+...
T Consensus 477 A~~A~~~lnGr~~~g----r~v~~~~~ 499 (509)
T TIGR01642 477 AEKAMEGMNGRKFND----RVVVAAFY 499 (509)
T ss_pred HHHHHHHcCCCEECC----eEEEEEEe
Confidence 999999999999999 44555443
No 18
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.92 E-value=1.2e-24 Score=174.00 Aligned_cols=164 Identities=24% Similarity=0.353 Sum_probs=140.1
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~ 80 (341)
+...||||+||+..++++.|.++|-+.|+|.+++|+. +....|||||+|.++|+|+-|++.||...+.|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 5678999999999999999999999999999999966 5678999999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeE-EEEeeCCchhhhhhhhhcccc
Q 019418 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF-SQVFRDRGELHWRMLRFWGGE 159 (341)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~-~~i~~~~~~~~~~~~~~~~~~ 159 (341)
.... .....+..|||+||.+.+++..|.++|..||.+.. ..|.++..
T Consensus 87 s~~~-------------------~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~------------- 134 (203)
T KOG0131|consen 87 SAHQ-------------------KNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPD------------- 134 (203)
T ss_pred cccc-------------------ccccccccccccccCcchhHHHHHHHHHhccccccCCccccccc-------------
Confidence 7322 22233378999999999999999999999997644 55666655
Q ss_pred cchhhhHhhhhccCCCCccccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccc
Q 019418 160 VNWGEIREAGRILGGGMFSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 239 (341)
Q Consensus 160 ~~~~~~~~ag~~~g~~~~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~ 239 (341)
+|.. +++|||-|.+.+.+.+||..+||..++.
T Consensus 135 --------tg~~---------------------------------------~~~g~i~~~sfeasd~ai~s~ngq~l~n- 166 (203)
T KOG0131|consen 135 --------TGNP---------------------------------------KGFGFINYASFEASDAAIGSMNGQYLCN- 166 (203)
T ss_pred --------CCCC---------------------------------------CCCeEEechhHHHHHHHHHHhccchhcC-
Confidence 3333 5699999999999999999999999998
Q ss_pred cccceEEEeec
Q 019418 240 FSRSYVRVREY 250 (341)
Q Consensus 240 ~~~~~~~~~~~ 250 (341)
..+.+...
T Consensus 167 ---r~itv~ya 174 (203)
T KOG0131|consen 167 ---RPITVSYA 174 (203)
T ss_pred ---CceEEEEE
Confidence 45555443
No 19
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.91 E-value=3e-23 Score=200.49 Aligned_cols=176 Identities=20% Similarity=0.319 Sum_probs=134.5
Q ss_pred CCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccC
Q 019418 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (341)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~ 82 (341)
.++|||+|||.++|+++|.++|++||+|..|.|.. ++.++|||||+|.+.++|.+|++.|||..|.|+.|.|.++..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 58999999999999999999999999999999965 467899999999999999999999999999999999999753
Q ss_pred CCCCCCCC------------CC----------------CC--------CCC----------CCC----------------
Q 019418 83 GRRHSSSM------------DR----------------YS--------SYS----------SGG---------------- 100 (341)
Q Consensus 83 ~~~~~~~~------------~~----------------~~--------~~~----------~~~---------------- 100 (341)
........ .. .. ... ..+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (457)
T TIGR01622 266 STYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALA 345 (457)
T ss_pred CCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccc
Confidence 21110000 00 00 000 000
Q ss_pred ----C-CCC---CCCCcceeeeeCCCCCCC----------HHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccch
Q 019418 101 ----S-RGV---SRRSDYRVLVTGLPSSAS----------WQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNW 162 (341)
Q Consensus 101 ----~-~~~---~~~~~~~l~V~nlp~~~~----------~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~ 162 (341)
. ..+ ......+|+|.||....+ .+||++.|.+||+|+.+.|.....
T Consensus 346 ~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~---------------- 409 (457)
T TIGR01622 346 IMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNS---------------- 409 (457)
T ss_pred cccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCC----------------
Confidence 0 000 113456788999865544 358999999999999998874433
Q ss_pred hhhHhhhhccCCCCccccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCcccccccccc
Q 019418 163 GEIREAGRILGGGMFSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 242 (341)
Q Consensus 163 ~~~~~ag~~~g~~~~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~ 242 (341)
.|++||+|.+.++|..|+..|||+.|+|
T Consensus 410 ------------------------------------------------~G~~fV~F~~~e~A~~A~~~lnGr~f~g---- 437 (457)
T TIGR01622 410 ------------------------------------------------AGKIYLKFSSVDAALAAFQALNGRYFGG---- 437 (457)
T ss_pred ------------------------------------------------ceeEEEEECCHHHHHHHHHHhcCcccCC----
Confidence 4689999999999999999999999999
Q ss_pred ceEEEee
Q 019418 243 SYVRVRE 249 (341)
Q Consensus 243 ~~~~~~~ 249 (341)
..|.+..
T Consensus 438 r~i~~~~ 444 (457)
T TIGR01622 438 KMITAAF 444 (457)
T ss_pred eEEEEEE
Confidence 4455543
No 20
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=4.8e-23 Score=189.33 Aligned_cols=175 Identities=20% Similarity=0.307 Sum_probs=142.1
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~ 81 (341)
+..||||++||+.+|.++|.++|+.+|+|..|.+.. .+.++||+||.|+-+|+++.|++.+++..|.|+.|.|..+.
T Consensus 4 ~g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~ 83 (678)
T KOG0127|consen 4 SGATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAK 83 (678)
T ss_pred CCceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccc
Confidence 448999999999999999999999999999999966 35779999999999999999999999999999999999997
Q ss_pred CCCCCCCCCCCCCCCCCCC-CC-----CCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhh
Q 019418 82 GGRRHSSSMDRYSSYSSGG-SR-----GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRF 155 (341)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~ 155 (341)
................... .. .....+.+.|.|.|||+.+...+|+.+|..||.|..+.|+....
T Consensus 84 ~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d--------- 154 (678)
T KOG0127|consen 84 KRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD--------- 154 (678)
T ss_pred ccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC---------
Confidence 6543321000000000000 00 01123368999999999999999999999999999999997766
Q ss_pred cccccchhhhHhhhhccCCCCccccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccc
Q 019418 156 WGGEVNWGEIREAGRILGGGMFSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSE 235 (341)
Q Consensus 156 ~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~ 235 (341)
|+. .|||||+|....+|..|++.+|+.+
T Consensus 155 -------------gkl---------------------------------------cGFaFV~fk~~~dA~~Al~~~N~~~ 182 (678)
T KOG0127|consen 155 -------------GKL---------------------------------------CGFAFVQFKEKKDAEKALEFFNGNK 182 (678)
T ss_pred -------------CCc---------------------------------------cceEEEEEeeHHHHHHHHHhccCce
Confidence 333 2599999999999999999999999
Q ss_pred ccccc
Q 019418 236 FRNAF 240 (341)
Q Consensus 236 ~~g~~ 240 (341)
|.|+.
T Consensus 183 i~gR~ 187 (678)
T KOG0127|consen 183 IDGRP 187 (678)
T ss_pred ecCce
Confidence 99954
No 21
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=3e-22 Score=184.11 Aligned_cols=167 Identities=22% Similarity=0.397 Sum_probs=133.6
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec--CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccC
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~--~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~ 82 (341)
+...|.|.|||+.+.+.+|..+|+.||.|.+|.|+. ++.-.|||||+|.+..+|..||+.|||..|+|++|.|.||.+
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 367899999999999999999999999999999965 566679999999999999999999999999999999999854
Q ss_pred CCCCCCC---------------------CCCCC----------------------CCCCC-----------CC--C----
Q 019418 83 GRRHSSS---------------------MDRYS----------------------SYSSG-----------GS--R---- 102 (341)
Q Consensus 83 ~~~~~~~---------------------~~~~~----------------------~~~~~-----------~~--~---- 102 (341)
...-... ..... .+..+ .. .
T Consensus 196 Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~ 275 (678)
T KOG0127|consen 196 KDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKE 275 (678)
T ss_pred cccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCc
Confidence 3211000 00000 00000 00 0
Q ss_pred ----------CCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhcc
Q 019418 103 ----------GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRIL 172 (341)
Q Consensus 103 ----------~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~ 172 (341)
........+|||.|||+++++++|.+.|.+||+|.++.|+.+.. ++.+
T Consensus 276 ~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~---------------------T~~s- 333 (678)
T KOG0127|consen 276 SDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKD---------------------TGHS- 333 (678)
T ss_pred ccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccC---------------------CCCc-
Confidence 01112237899999999999999999999999999999999987 5665
Q ss_pred CCCCccccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhc
Q 019418 173 GGGMFSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKL 231 (341)
Q Consensus 173 g~~~~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l 231 (341)
+|.|||.|.+..+|+.||+..
T Consensus 334 --------------------------------------kGtAFv~Fkt~~~~~~ci~~A 354 (678)
T KOG0127|consen 334 --------------------------------------KGTAFVKFKTQIAAQNCIEAA 354 (678)
T ss_pred --------------------------------------ccceEEEeccHHHHHHHHHhc
Confidence 569999999999999999887
No 22
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=1e-23 Score=185.02 Aligned_cols=168 Identities=21% Similarity=0.327 Sum_probs=141.2
Q ss_pred CEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccCC
Q 019418 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (341)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~ 83 (341)
|+||||.|.+.+.|+.|+..|..||+|++|.|.| |++++|||||+|+-+|.|+.|++.|||.+++|+.|+|.....-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 7899999999999999999999999999999977 7899999999999999999999999999999999999865432
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchh
Q 019418 84 RRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWG 163 (341)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~ 163 (341)
.....-.+ ........-++|||..+-++.+++||+..|+-||+|.+|.+.+++.
T Consensus 194 pQAQpiID---------~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt----------------- 247 (544)
T KOG0124|consen 194 PQAQPIID---------MVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPT----------------- 247 (544)
T ss_pred cccchHHH---------HHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCC-----------------
Confidence 11000000 0001223347899999999999999999999999999999998876
Q ss_pred hhHhhhhccCCCCccccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccc
Q 019418 164 EIREAGRILGGGMFSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 243 (341)
Q Consensus 164 ~~~~ag~~~g~~~~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~ 243 (341)
. -.++||||++|.+.....+||..||--.+.| -
T Consensus 248 ----~---------------------------------------~~HkGyGfiEy~n~qs~~eAiasMNlFDLGG----Q 280 (544)
T KOG0124|consen 248 ----G---------------------------------------RGHKGYGFIEYNNLQSQSEAIASMNLFDLGG----Q 280 (544)
T ss_pred ----C---------------------------------------CCccceeeEEeccccchHHHhhhcchhhccc----c
Confidence 1 1347899999999999999999999999999 4
Q ss_pred eEEE
Q 019418 244 YVRV 247 (341)
Q Consensus 244 ~~~~ 247 (341)
+++|
T Consensus 281 yLRV 284 (544)
T KOG0124|consen 281 YLRV 284 (544)
T ss_pred eEec
Confidence 5554
No 23
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=1e-22 Score=171.21 Aligned_cols=159 Identities=38% Similarity=0.633 Sum_probs=132.7
Q ss_pred CEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccCCCCC
Q 019418 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRH 86 (341)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~~~~ 86 (341)
..|||++||+.+.+.+|+.||..||.|.+|.|+ .||+||+|.++.+|..|+..||+..|.|-.+.|+++......
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-----~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~ 76 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK-----NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRG 76 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee-----cccceeccCchhhhhcccchhcCceecceeeeeecccccccc
Confidence 479999999999999999999999999999998 789999999999999999999999999999999998754322
Q ss_pred CCCCCCCCCCC-CCCCCCCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhh
Q 019418 87 SSSMDRYSSYS-SGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEI 165 (341)
Q Consensus 87 ~~~~~~~~~~~-~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 165 (341)
... ...+... ......++..+.+.+.|.|++..+.|++|.+.|.++|.+.+..+ .
T Consensus 77 ~g~-~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~----~------------------- 132 (216)
T KOG0106|consen 77 RGR-PRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA----R------------------- 132 (216)
T ss_pred cCC-CCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh----h-------------------
Confidence 100 0000000 12234567788899999999999999999999999999866555 1
Q ss_pred HhhhhccCCCCccccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccc
Q 019418 166 REAGRILGGGMFSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 239 (341)
Q Consensus 166 ~~ag~~~g~~~~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~ 239 (341)
.+++||+|...++|..|++.|++..+.++
T Consensus 133 ---------------------------------------------~~~~~v~Fs~~~da~ra~~~l~~~~~~~~ 161 (216)
T KOG0106|consen 133 ---------------------------------------------RNFAFVEFSEQEDAKRALEKLDGKKLNGR 161 (216)
T ss_pred ---------------------------------------------ccccceeehhhhhhhhcchhccchhhcCc
Confidence 24899999999999999999999999994
No 24
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=3.6e-22 Score=168.06 Aligned_cols=175 Identities=24% Similarity=0.380 Sum_probs=140.4
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCC--eEEEEEE
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG--YRLRVEL 79 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g--~~l~v~~ 79 (341)
...+|||.+||..+|..||+++|++||.|..-+|.. ++.++|.+||.|...++|+.||..|||+.--| .+|.|++
T Consensus 126 k~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKF 205 (360)
T KOG0145|consen 126 KDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKF 205 (360)
T ss_pred cccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEe
Confidence 456899999999999999999999999998777743 78999999999999999999999999988765 5899999
Q ss_pred ccCCCCCCCC----------CCCCC-----------------------CCCC---C-------CCCCCCCCCcceeeeeC
Q 019418 80 AHGGRRHSSS----------MDRYS-----------------------SYSS---G-------GSRGVSRRSDYRVLVTG 116 (341)
Q Consensus 80 ~~~~~~~~~~----------~~~~~-----------------------~~~~---~-------~~~~~~~~~~~~l~V~n 116 (341)
+......... ..+.. .++. + ...+......++|||-|
T Consensus 206 annPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYN 285 (360)
T KOG0145|consen 206 ANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYN 285 (360)
T ss_pred cCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEe
Confidence 8754321110 00000 0000 0 01122334579999999
Q ss_pred CCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEEEEeecchhh
Q 019418 117 LPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFIYFKCMRLS 196 (341)
Q Consensus 117 lp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi~~~~~~~s 196 (341)
|.+++++.-|-++|.+||.|+.|.|.+|.. +.+.
T Consensus 286 Lspd~de~~LWQlFgpFGAv~nVKvirD~t---------------------tnkC------------------------- 319 (360)
T KOG0145|consen 286 LSPDADESILWQLFGPFGAVTNVKVIRDFT---------------------TNKC------------------------- 319 (360)
T ss_pred cCCCchHhHHHHHhCcccceeeEEEEecCC---------------------cccc-------------------------
Confidence 999999999999999999999999999976 3333
Q ss_pred HHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccc
Q 019418 197 YFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 239 (341)
Q Consensus 197 ~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~ 239 (341)
+|||||.+.+.++|..||..|||..+.++
T Consensus 320 --------------KGfgFVtMtNYdEAamAi~sLNGy~lg~r 348 (360)
T KOG0145|consen 320 --------------KGFGFVTMTNYDEAAMAIASLNGYRLGDR 348 (360)
T ss_pred --------------cceeEEEecchHHHHHHHHHhcCccccce
Confidence 67999999999999999999999999984
No 25
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.88 E-value=4.2e-21 Score=179.36 Aligned_cols=184 Identities=23% Similarity=0.303 Sum_probs=143.1
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCC--eEEEEEE
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG--YRLRVEL 79 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g--~~l~v~~ 79 (341)
..++|||+|||.++++++|.++|.+||+|..+.++. ++.++|||||+|.+.++|+.||+.|||..+.| .+|.|.+
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 467899999999999999999999999999999865 46789999999999999999999999999887 6788888
Q ss_pred ccCCCCCCCC--------------CCCCCC----------------------------------------------CCCC
Q 019418 80 AHGGRRHSSS--------------MDRYSS----------------------------------------------YSSG 99 (341)
Q Consensus 80 ~~~~~~~~~~--------------~~~~~~----------------------------------------------~~~~ 99 (341)
+......... ...... ....
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 7543210000 000000 0000
Q ss_pred ------------CCCCCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHh
Q 019418 100 ------------GSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIRE 167 (341)
Q Consensus 100 ------------~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (341)
...+.....+.+|||+|||.++++++|.++|.+||.|..+.|..+..
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~--------------------- 306 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLT--------------------- 306 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCC---------------------
Confidence 00000012234699999999999999999999999999999999875
Q ss_pred hhhccCCCCccccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEE
Q 019418 168 AGRILGGGMFSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 247 (341)
Q Consensus 168 ag~~~g~~~~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~ 247 (341)
+|.+ +|+|||+|.+.++|..||..|||..++| ..|+|
T Consensus 307 t~~s---------------------------------------kG~aFV~F~~~~~A~~Ai~~lnG~~~~g----r~i~V 343 (352)
T TIGR01661 307 TNQC---------------------------------------KGYGFVSMTNYDEAAMAILSLNGYTLGN----RVLQV 343 (352)
T ss_pred CCCc---------------------------------------cceEEEEECCHHHHHHHHHHhCCCEECC----eEEEE
Confidence 3444 6799999999999999999999999999 56776
Q ss_pred eeccC
Q 019418 248 REYDS 252 (341)
Q Consensus 248 ~~~~~ 252 (341)
.....
T Consensus 344 ~~~~~ 348 (352)
T TIGR01661 344 SFKTN 348 (352)
T ss_pred EEccC
Confidence 65543
No 26
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=1.7e-20 Score=173.52 Aligned_cols=143 Identities=25% Similarity=0.344 Sum_probs=129.8
Q ss_pred CEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccCCCCC
Q 019418 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRH 86 (341)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~~~~ 86 (341)
..|||| +++|+..|.++|+++|+|.+|+|-.+-.+-|||||.|.++++|++||+.||...+.|++|+|-|......
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~- 77 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPS- 77 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCc-
Confidence 468999 9999999999999999999999944213899999999999999999999999999999999999875431
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhH
Q 019418 87 SSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIR 166 (341)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (341)
.|||.||+++++..+|.++|..||+|+.|.+..+..
T Consensus 78 ------------------------~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-------------------- 113 (369)
T KOG0123|consen 78 ------------------------LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-------------------- 113 (369)
T ss_pred ------------------------eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC--------------------
Confidence 299999999999999999999999999999999987
Q ss_pred hhhhccCCCCccccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCcccccccc
Q 019418 167 EAGRILGGGMFSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 240 (341)
Q Consensus 167 ~ag~~~g~~~~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~ 240 (341)
| .+++ ||+|++++.|.+||+.|||..+.|+.
T Consensus 114 --g----------------------------------------~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kk 144 (369)
T KOG0123|consen 114 --G----------------------------------------SKGY-FVQFESEESAKKAIEKLNGMLLNGKK 144 (369)
T ss_pred --C----------------------------------------ceee-EEEeCCHHHHHHHHHHhcCcccCCCe
Confidence 1 2668 99999999999999999999999954
No 27
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.85 E-value=6e-20 Score=146.29 Aligned_cols=79 Identities=48% Similarity=0.793 Sum_probs=73.9
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccCC
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~ 83 (341)
.-.++|||+||+.++|+.||+.+|..||+|..|+|.. .+.|||||+|+++.+|+.|+..|+|..|+|..|.|++....
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr--nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR--NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGR 85 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEee--cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCC
Confidence 3578999999999999999999999999999999975 56999999999999999999999999999999999998865
Q ss_pred C
Q 019418 84 R 84 (341)
Q Consensus 84 ~ 84 (341)
.
T Consensus 86 ~ 86 (195)
T KOG0107|consen 86 P 86 (195)
T ss_pred c
Confidence 4
No 28
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.84 E-value=2.2e-20 Score=177.06 Aligned_cols=163 Identities=23% Similarity=0.408 Sum_probs=134.7
Q ss_pred CEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec--CC----CCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 019418 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PP----RPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (341)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~--~~----~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~ 80 (341)
++|||.||++++|.++|..+|...|.|..|.|.. ++ -+.|||||+|.++++|+.|++.|+|..|+|+.|.|.++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 3499999999999999999999999999999955 22 23499999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhccccc
Q 019418 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEV 160 (341)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~ 160 (341)
...+.... +..-+.....+.|.|.|||+.++..+++++|..||.+..|+|+....
T Consensus 596 ~~k~~~~~-----------gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~-------------- 650 (725)
T KOG0110|consen 596 ENKPASTV-----------GKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIG-------------- 650 (725)
T ss_pred cCcccccc-----------ccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhc--------------
Confidence 82211110 00112223357899999999999999999999999999999987622
Q ss_pred chhhhHhhhhccCCCCccccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCcccccccc
Q 019418 161 NWGEIREAGRILGGGMFSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 240 (341)
Q Consensus 161 ~~~~~~~ag~~~g~~~~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~ 240 (341)
+ -.+.|+|||+|.++++|..|+++|..+.+-|+.
T Consensus 651 ---------k-------------------------------------~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRr 684 (725)
T KOG0110|consen 651 ---------K-------------------------------------GAHRGFGFVDFLTPREAKNAFDALGSTHLYGRR 684 (725)
T ss_pred ---------c-------------------------------------hhhccceeeeccCcHHHHHHHHhhcccceechh
Confidence 1 122579999999999999999999999999954
No 29
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=3.5e-20 Score=157.06 Aligned_cols=132 Identities=23% Similarity=0.380 Sum_probs=112.9
Q ss_pred CCCCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 019418 1 MSSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (341)
Q Consensus 1 m~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~ 80 (341)
|.+...+||||+||+..+||+-|..||.+.|.|+.|+|+.+ .|+|.++
T Consensus 1 ~~~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~--------------------------------e~~v~wa 48 (321)
T KOG0148|consen 1 NGSDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD--------------------------------ELKVNWA 48 (321)
T ss_pred CCCCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh--------------------------------hhccccc
Confidence 66788999999999999999999999999999999999743 5566666
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhccccc
Q 019418 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEV 160 (341)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~ 160 (341)
.....++. +.......+||+.|.++++-++|++.|.+||+|.+++|++|..
T Consensus 49 ~~p~nQsk---------------~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~-------------- 99 (321)
T KOG0148|consen 49 TAPGNQSK---------------PTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMN-------------- 99 (321)
T ss_pred cCcccCCC---------------CccccceeEEehhcchhcchHHHHHHhccccccccceEeeccc--------------
Confidence 54422221 3333457899999999999999999999999999999999987
Q ss_pred chhhhHhhhhccCCCCccccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccc
Q 019418 161 NWGEIREAGRILGGGMFSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 239 (341)
Q Consensus 161 ~~~~~~~ag~~~g~~~~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~ 239 (341)
++++ +|+|||.|.+.++|+.||..|||.+|.++
T Consensus 100 -------T~Ks---------------------------------------KGYgFVSf~~k~dAEnAI~~MnGqWlG~R 132 (321)
T KOG0148|consen 100 -------TGKS---------------------------------------KGYGFVSFPNKEDAENAIQQMNGQWLGRR 132 (321)
T ss_pred -------CCcc---------------------------------------cceeEEeccchHHHHHHHHHhCCeeeccc
Confidence 5555 77999999999999999999999999994
No 30
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=1.5e-19 Score=167.10 Aligned_cols=163 Identities=23% Similarity=0.399 Sum_probs=138.3
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec-CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~-~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~ 81 (341)
.++...|||.||++++|..+|.++|+.||+|++|++.. ...++|| ||+|.++++|++||+.|||..+.|++|.|....
T Consensus 73 ~rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~ 151 (369)
T KOG0123|consen 73 QRDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFE 151 (369)
T ss_pred ccCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeecc
Confidence 34566699999999999999999999999999999976 2348999 999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccc
Q 019418 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVN 161 (341)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~ 161 (341)
......... ......-..++|.|++.+++.+.|.++|..+|.|..+.+..+..
T Consensus 152 ~~~er~~~~------------~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~--------------- 204 (369)
T KOG0123|consen 152 RKEEREAPL------------GEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSI--------------- 204 (369)
T ss_pred chhhhcccc------------cchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCC---------------
Confidence 654321100 01222335789999999999999999999999999999998866
Q ss_pred hhhhHhhhhccCCCCccccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccc
Q 019418 162 WGEIREAGRILGGGMFSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 239 (341)
Q Consensus 162 ~~~~~~ag~~~g~~~~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~ 239 (341)
|. ++++|||.|.++++|..|++.|++..+.+.
T Consensus 205 -------g~---------------------------------------~~~~gfv~f~~~e~a~~av~~l~~~~~~~~ 236 (369)
T KOG0123|consen 205 -------GK---------------------------------------SKGFGFVNFENPEDAKKAVETLNGKIFGDK 236 (369)
T ss_pred -------CC---------------------------------------CCCccceeecChhHHHHHHHhccCCcCCcc
Confidence 22 257999999999999999999999999863
No 31
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.81 E-value=8.4e-19 Score=146.08 Aligned_cols=172 Identities=22% Similarity=0.324 Sum_probs=137.7
Q ss_pred CCCCCCCEEEeCCCCCCCCHHHHHH----HhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEE
Q 019418 1 MSSRSSRTLYVGNLPGDTRMREVED----LFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLR 76 (341)
Q Consensus 1 m~~~~~~~l~V~nLp~~~t~~~l~~----~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~ 76 (341)
|+..++.||||.||+..+..++|.. +|++||+|.+|....+.+.+|.|||.|.+.+.|-.|+..|+|..+.|++++
T Consensus 4 ~~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 4 MSVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred cccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 3456677999999999999999888 999999999999988999999999999999999999999999999999999
Q ss_pred EEEccCCCCCCCC-----CCCCCC--------------CCC-------CC---CC-CCCCCCcceeeeeCCCCCCCHHHH
Q 019418 77 VELAHGGRRHSSS-----MDRYSS--------------YSS-------GG---SR-GVSRRSDYRVLVTGLPSSASWQDL 126 (341)
Q Consensus 77 v~~~~~~~~~~~~-----~~~~~~--------------~~~-------~~---~~-~~~~~~~~~l~V~nlp~~~~~~~l 126 (341)
|.+|+....--.. ..+... ..+ .. .. .....+...+++.|||.+++.+.|
T Consensus 84 iqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l 163 (221)
T KOG4206|consen 84 IQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEML 163 (221)
T ss_pred eecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHH
Confidence 9998754211000 000000 000 00 00 122455678999999999999999
Q ss_pred HHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEEEEeecchhhHHhhhccccc
Q 019418 127 KDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFIYFKCMRLSYFKHFRESYH 206 (341)
Q Consensus 127 ~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~ 206 (341)
..+|.+|.....+++.....
T Consensus 164 ~~lf~qf~g~keir~i~~~~------------------------------------------------------------ 183 (221)
T KOG4206|consen 164 SDLFEQFPGFKEIRLIPPRS------------------------------------------------------------ 183 (221)
T ss_pred HHHHhhCcccceeEeccCCC------------------------------------------------------------
Confidence 99999999888888876544
Q ss_pred ccCCCceEEEEecChhhHHHHHHhcCccccc
Q 019418 207 NIFAGMTGIVDYTSYDDMKYAIRKLDRSEFR 237 (341)
Q Consensus 207 ~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~ 237 (341)
+.+||+|.+...|..|...|.+-.+.
T Consensus 184 -----~iAfve~~~d~~a~~a~~~lq~~~it 209 (221)
T KOG4206|consen 184 -----GIAFVEFLSDRQASAAQQALQGFKIT 209 (221)
T ss_pred -----ceeEEecchhhhhHHHhhhhccceec
Confidence 58999999999999999999887765
No 32
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.81 E-value=3.1e-19 Score=145.66 Aligned_cols=79 Identities=38% Similarity=0.588 Sum_probs=74.4
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~ 81 (341)
...+|.|-||.+.+|.++|..+|++||.|-+|.|+. |++++|||||-|.+..+|+.|+++|+|.+|+|+.|.|+.|.
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 457899999999999999999999999999999976 78999999999999999999999999999999999999987
Q ss_pred CC
Q 019418 82 GG 83 (341)
Q Consensus 82 ~~ 83 (341)
-.
T Consensus 92 yg 93 (256)
T KOG4207|consen 92 YG 93 (256)
T ss_pred cC
Confidence 43
No 33
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.81 E-value=1.1e-18 Score=139.12 Aligned_cols=77 Identities=25% Similarity=0.280 Sum_probs=69.8
Q ss_pred cceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEEE
Q 019418 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFI 188 (341)
Q Consensus 109 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi 188 (341)
.++|||+||+..+++.||+..|..||.|..|.|...+.
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPP------------------------------------------ 47 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPP------------------------------------------ 47 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCC------------------------------------------
Confidence 47999999999999999999999999999999988665
Q ss_pred EeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccCCC
Q 019418 189 YFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSRR 254 (341)
Q Consensus 189 ~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~~r 254 (341)
+||||+|+++.||+.|+..|||+.|.| ..|+|.......
T Consensus 48 -----------------------GfAFVEFed~RDA~DAvr~LDG~~~cG----~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 48 -----------------------GFAFVEFEDPRDAEDAVRYLDGKDICG----SRIRVELSTGRP 86 (195)
T ss_pred -----------------------CceEEeccCcccHHHHHhhcCCccccC----ceEEEEeecCCc
Confidence 799999999999999999999999999 778877665443
No 34
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.80 E-value=1.2e-18 Score=168.44 Aligned_cols=125 Identities=21% Similarity=0.248 Sum_probs=100.8
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCC-EeEEEeec----CCCCCcEEEEEEcCHHHHHHHHHhcCC--ceeCCeEEE
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGP-IVDIDLKI----PPRPPGYAFLEFEDYRDAEDAIRGRDG--YNFDGYRLR 76 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~-I~~i~i~~----~~~~~g~afV~F~~~e~A~~Ai~~lng--~~i~g~~l~ 76 (341)
.+.++|||+|||.++|+++|.++|.++++ |+++.+.. .++++|||||+|.+.++|..|++.|+. ..+.|+.|.
T Consensus 136 ~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~ 215 (578)
T TIGR01648 136 VDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIA 215 (578)
T ss_pred ccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEE
Confidence 35789999999999999999999999974 44444422 356799999999999999999988764 467899999
Q ss_pred EEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeeeCCCCCCCHHHHHHHHHHh--CCeeEEEEee
Q 019418 77 VELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRA--GDVCFSQVFR 143 (341)
Q Consensus 77 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~--G~i~~~~i~~ 143 (341)
|.|+.+...... .......+|||+|||..+++++|+++|.+| |+|+.|.+..
T Consensus 216 VdwA~p~~~~d~---------------~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r 269 (578)
T TIGR01648 216 VDWAEPEEEVDE---------------DVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR 269 (578)
T ss_pred EEeecccccccc---------------cccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec
Confidence 999976542211 112234689999999999999999999999 9999987653
No 35
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.79 E-value=1.7e-18 Score=141.45 Aligned_cols=78 Identities=18% Similarity=0.117 Sum_probs=70.7
Q ss_pred CCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCcccccc
Q 019418 103 GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYR 182 (341)
Q Consensus 103 ~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~ 182 (341)
++....-..|.|.||...++.++|..+|++||.|.+|.|+.|.. ++++
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~---------------------Tr~s----------- 54 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRY---------------------TRQS----------- 54 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccc---------------------cccc-----------
Confidence 46666678999999999999999999999999999999999987 4455
Q ss_pred ceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCcccccccc
Q 019418 183 FRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 240 (341)
Q Consensus 183 ~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~ 240 (341)
++||||-|-...+|+.|+++|+|.+|+|.+
T Consensus 55 ----------------------------RgFaFVrf~~k~daedA~damDG~~ldgRe 84 (256)
T KOG4207|consen 55 ----------------------------RGFAFVRFHDKRDAEDALDAMDGAVLDGRE 84 (256)
T ss_pred ----------------------------cceeEEEeeecchHHHHHHhhcceeeccce
Confidence 569999999999999999999999999965
No 36
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=99.79 E-value=1.4e-19 Score=160.53 Aligned_cols=141 Identities=16% Similarity=0.130 Sum_probs=96.8
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecC------CCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEE
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP------PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~------~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~ 78 (341)
....|.|.||.+++|.++|+.||...|+|.++.|..+ ......|||.|.+.+++..|.. |.++.|-++.|.|.
T Consensus 6 ~~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~ 84 (479)
T KOG4676|consen 6 SLGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVR 84 (479)
T ss_pred CCceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEE
Confidence 4458999999999999999999999999999999542 2346789999999999999976 66666666666665
Q ss_pred EccCCCCCCC-C-------CCCCCCCCCCC-----------------CC-CCCC----------CCcceeeeeCCCCCCC
Q 019418 79 LAHGGRRHSS-S-------MDRYSSYSSGG-----------------SR-GVSR----------RSDYRVLVTGLPSSAS 122 (341)
Q Consensus 79 ~~~~~~~~~~-~-------~~~~~~~~~~~-----------------~~-~~~~----------~~~~~l~V~nlp~~~~ 122 (341)
+.-....... . ...+.....++ .. .|+. ....+++|++|+..+.
T Consensus 85 p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~ 164 (479)
T KOG4676|consen 85 PYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAI 164 (479)
T ss_pred ecCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhc
Confidence 5432211110 0 00000000000 00 0111 1124689999999999
Q ss_pred HHHHHHHHHHhCCeeEEEEeeCCc
Q 019418 123 WQDLKDHMRRAGDVCFSQVFRDRG 146 (341)
Q Consensus 123 ~~~l~~~f~~~G~i~~~~i~~~~~ 146 (341)
..++.+.|..+|+|.+..+.....
T Consensus 165 l~e~~e~f~r~Gev~ya~~ask~~ 188 (479)
T KOG4676|consen 165 LPESGESFERKGEVSYAHTASKSR 188 (479)
T ss_pred chhhhhhhhhcchhhhhhhhccCC
Confidence 999999999999999888765543
No 37
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.79 E-value=1.9e-18 Score=139.73 Aligned_cols=82 Identities=29% Similarity=0.499 Sum_probs=76.1
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~ 80 (341)
..+++|||+|||+++|+++|+++|++||+|.+|.|+. +++++|||||+|.++++|++||+.||+..|+|+.|+|.++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 3578999999999999999999999999999999965 6788999999999999999999999999999999999999
Q ss_pred cCCCC
Q 019418 81 HGGRR 85 (341)
Q Consensus 81 ~~~~~ 85 (341)
.....
T Consensus 112 ~~~~~ 116 (144)
T PLN03134 112 NDRPS 116 (144)
T ss_pred CcCCC
Confidence 76544
No 38
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.78 E-value=2.5e-17 Score=159.59 Aligned_cols=78 Identities=23% Similarity=0.444 Sum_probs=73.0
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~ 81 (341)
..++|||+|||+++++++|+++|+.||+|+.|.|.. ++.++|||||+|.+.++|.+||+.|||..|+|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 457999999999999999999999999999999965 56789999999999999999999999999999999999876
Q ss_pred C
Q 019418 82 G 82 (341)
Q Consensus 82 ~ 82 (341)
.
T Consensus 283 ~ 283 (612)
T TIGR01645 283 T 283 (612)
T ss_pred C
Confidence 4
No 39
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.77 E-value=4.5e-18 Score=152.17 Aligned_cols=131 Identities=20% Similarity=0.358 Sum_probs=112.3
Q ss_pred CCCCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEE
Q 019418 1 MSSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRV 77 (341)
Q Consensus 1 m~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v 77 (341)
|+..+.++|||++|++++|+|.|.+.|.+||+|.+|.++. +++++||+||+|++++.+..+|. ...+.|+|+.|.+
T Consensus 1 ~~~~~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~ 79 (311)
T KOG4205|consen 1 SESGESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEP 79 (311)
T ss_pred CCccCCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccc
Confidence 4556899999999999999999999999999999999976 68899999999999999999987 3567799999999
Q ss_pred EEccCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCc
Q 019418 78 ELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG 146 (341)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~ 146 (341)
+.+.+...+... ........|||++||.++++++|+++|.+||.|..+.++.|..
T Consensus 80 k~av~r~~~~~~--------------~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~ 134 (311)
T KOG4205|consen 80 KRAVSREDQTKV--------------GRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKT 134 (311)
T ss_pred eeccCccccccc--------------ccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeeccc
Confidence 998865533221 1111346899999999999999999999999999999998876
No 40
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.77 E-value=8.1e-18 Score=151.85 Aligned_cols=127 Identities=24% Similarity=0.293 Sum_probs=104.7
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCC-EeEEEeec----CCCCCcEEEEEEcCHHHHHHHHHhcC-C-ceeCCeEE
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGP-IVDIDLKI----PPRPPGYAFLEFEDYRDAEDAIRGRD-G-YNFDGYRL 75 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~-I~~i~i~~----~~~~~g~afV~F~~~e~A~~Ai~~ln-g-~~i~g~~l 75 (341)
+..+|+|||||||.+.++++|.+.|++.++ |++|.|.. ..+++|||||+|.+...|..|-..|- | ..+.|..+
T Consensus 161 Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~ 240 (506)
T KOG0117|consen 161 SVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAI 240 (506)
T ss_pred eeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcc
Confidence 357899999999999999999999999984 55665533 45789999999999999999987664 3 45789999
Q ss_pred EEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeC
Q 019418 76 RVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD 144 (341)
Q Consensus 76 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~ 144 (341)
.|.||.+...... .....-..|||.||+.++|++.|+++|.+||.|+.|..++|
T Consensus 241 tVdWAep~~e~de---------------d~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD 294 (506)
T KOG0117|consen 241 TVDWAEPEEEPDE---------------DTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD 294 (506)
T ss_pred eeeccCcccCCCh---------------hhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc
Confidence 9999987654322 12223357999999999999999999999999999988755
No 41
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.76 E-value=3.4e-18 Score=158.24 Aligned_cols=76 Identities=28% Similarity=0.549 Sum_probs=70.6
Q ss_pred CEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccC
Q 019418 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (341)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~ 82 (341)
..|||+||.+++|+++|..+|+.||.|+.|.+.. +|.++||+||+|.+.++|.+|+..|||..|.|+.|+|.....
T Consensus 279 ~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred hhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeee
Confidence 3499999999999999999999999999999955 799999999999999999999999999999999999987543
No 42
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.76 E-value=4.1e-19 Score=164.29 Aligned_cols=171 Identities=22% Similarity=0.323 Sum_probs=141.2
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~ 79 (341)
+++.+|||+--|+..+++-+|+++|+.+|+|.+|.|+. ++.++|.|||+|.+.+++..||. |.|+.+.|.+|.|..
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQL 254 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEecc
Confidence 46778999999999999999999999999999999965 57889999999999999999996 899999999999998
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccc
Q 019418 80 AHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGE 159 (341)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~ 159 (341)
....++....+ ...+.+++..++ -..|||+||-+.+++++|+.+|+.||.|..+++..+..
T Consensus 255 sEaeknr~a~~--s~a~~~k~~~~p----~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~------------- 315 (549)
T KOG0147|consen 255 SEAEKNRAANA--SPALQGKGFTGP----MRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSE------------- 315 (549)
T ss_pred cHHHHHHHHhc--cccccccccccc----hhhhhhcccccCchHHHHhhhccCcccceeeeeccccc-------------
Confidence 76554431110 111111111111 12399999999999999999999999999999999875
Q ss_pred cchhhhHhhhhccCCCCccccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccc
Q 019418 160 VNWGEIREAGRILGGGMFSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 239 (341)
Q Consensus 160 ~~~~~~~~ag~~~g~~~~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~ 239 (341)
+|.+ ++||||+|.+.++|..|++.|||-++.|.
T Consensus 316 --------tG~s---------------------------------------kgfGfi~f~~~~~ar~a~e~lngfelAGr 348 (549)
T KOG0147|consen 316 --------TGRS---------------------------------------KGFGFITFVNKEDARKALEQLNGFELAGR 348 (549)
T ss_pred --------cccc---------------------------------------cCcceEEEecHHHHHHHHHHhccceecCc
Confidence 4555 56999999999999999999999999995
Q ss_pred c
Q 019418 240 F 240 (341)
Q Consensus 240 ~ 240 (341)
.
T Consensus 349 ~ 349 (549)
T KOG0147|consen 349 L 349 (549)
T ss_pred e
Confidence 4
No 43
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.71 E-value=8e-17 Score=144.83 Aligned_cols=79 Identities=28% Similarity=0.413 Sum_probs=71.9
Q ss_pred CCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec--CCCCCcEEEEEEcCHHHHHHHHHhcCCcee-C--CeEEEEEEc
Q 019418 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNF-D--GYRLRVELA 80 (341)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~--~~~~~g~afV~F~~~e~A~~Ai~~lng~~i-~--g~~l~v~~~ 80 (341)
.++|||+-|+..+||.+|+++|.+||.|++|.|.. .+.++|||||.|.+.|.|..||+.|||..- . ..+|.|+|+
T Consensus 124 e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFA 203 (510)
T KOG0144|consen 124 ERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFA 203 (510)
T ss_pred chhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEec
Confidence 67999999999999999999999999999999977 688999999999999999999999999654 3 579999998
Q ss_pred cCCC
Q 019418 81 HGGR 84 (341)
Q Consensus 81 ~~~~ 84 (341)
...+
T Consensus 204 Dtqk 207 (510)
T KOG0144|consen 204 DTQK 207 (510)
T ss_pred ccCC
Confidence 6544
No 44
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.71 E-value=2.6e-16 Score=130.15 Aligned_cols=170 Identities=22% Similarity=0.323 Sum_probs=127.3
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCC----CcEEEEEEcCHHHHHHHHHhcCCceeC---CeEEEE
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRP----PGYAFLEFEDYRDAEDAIRGRDGYNFD---GYRLRV 77 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~----~g~afV~F~~~e~A~~Ai~~lng~~i~---g~~l~v 77 (341)
.-+||||.+||.++...||..+|..|---+.+.|+.+.+. +.+|||+|.+.++|..|+.+|||+.|+ +..|+|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 3689999999999999999999999977777778765443 489999999999999999999999996 889999
Q ss_pred EEccCCCCCCCCCCCC--C-------------------------CCCCC-----C-------------------------
Q 019418 78 ELAHGGRRHSSSMDRY--S-------------------------SYSSG-----G------------------------- 100 (341)
Q Consensus 78 ~~~~~~~~~~~~~~~~--~-------------------------~~~~~-----~------------------------- 100 (341)
++++...+........ + .+... +
T Consensus 113 ElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~ 192 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPS 192 (284)
T ss_pred eehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCc
Confidence 9987543221110000 0 00000 0
Q ss_pred ---------CCCCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhc
Q 019418 101 ---------SRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRI 171 (341)
Q Consensus 101 ---------~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~ 171 (341)
..+......-+|||.||.+++++++|+.+|+.|-....+.|.....
T Consensus 193 a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g------------------------- 247 (284)
T KOG1457|consen 193 ANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGG------------------------- 247 (284)
T ss_pred ccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCC-------------------------
Confidence 0000111124799999999999999999999998777666654322
Q ss_pred cCCCCccccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCcccccc
Q 019418 172 LGGGMFSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRN 238 (341)
Q Consensus 172 ~g~~~~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g 238 (341)
..++||+|+..+.|..|+..|.|-.+..
T Consensus 248 ---------------------------------------~~vaf~~~~~~~~at~am~~lqg~~~s~ 275 (284)
T KOG1457|consen 248 ---------------------------------------MPVAFADFEEIEQATDAMNHLQGNLLSS 275 (284)
T ss_pred ---------------------------------------cceEeecHHHHHHHHHHHHHhhcceecc
Confidence 3489999999999999999999887654
No 45
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.69 E-value=4.5e-17 Score=123.21 Aligned_cols=80 Identities=36% Similarity=0.521 Sum_probs=73.9
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEee---cCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK---IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~---~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~ 80 (341)
+.++||||+||++.+|||+|.+||+++|+|..|.|- .+..+.|||||+|...++|+.|+..++|..++.++|.|.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 578999999999999999999999999999999882 25678999999999999999999999999999999999997
Q ss_pred cCC
Q 019418 81 HGG 83 (341)
Q Consensus 81 ~~~ 83 (341)
...
T Consensus 114 ~GF 116 (153)
T KOG0121|consen 114 AGF 116 (153)
T ss_pred ccc
Confidence 644
No 46
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.69 E-value=1.6e-15 Score=133.21 Aligned_cols=182 Identities=19% Similarity=0.245 Sum_probs=136.6
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeE--------EEeec--CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCC
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVD--------IDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG 72 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~--------i~i~~--~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g 72 (341)
..-++.|||.|||.++|.+++.++|++||-|.. |+|-. .|+.+|=|+|.|...++++.|++.|++..|.|
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 345678999999999999999999999998763 45532 68999999999999999999999999999999
Q ss_pred eEEEEEEccCCCCCCCCCCCCC----------------CCCCCC--CCCCCCCCcceeeeeCCCC----CCC-------H
Q 019418 73 YRLRVELAHGGRRHSSSMDRYS----------------SYSSGG--SRGVSRRSDYRVLVTGLPS----SAS-------W 123 (341)
Q Consensus 73 ~~l~v~~~~~~~~~~~~~~~~~----------------~~~~~~--~~~~~~~~~~~l~V~nlp~----~~~-------~ 123 (341)
+.|+|+.|+...+..-.+.... .+.-.+ ..+.......+|.|.||=. ..+ .
T Consensus 211 ~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlk 290 (382)
T KOG1548|consen 211 KKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLK 290 (382)
T ss_pred cEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHH
Confidence 9999999875432222111110 000001 1223344567888888632 223 3
Q ss_pred HHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEEEEeecchhhHHhhhcc
Q 019418 124 QDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFIYFKCMRLSYFKHFRE 203 (341)
Q Consensus 124 ~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi~~~~~~~s~~~~~~~ 203 (341)
++|.+-..+||.|..|.|....+
T Consensus 291 edl~eec~K~G~v~~vvv~d~hP--------------------------------------------------------- 313 (382)
T KOG1548|consen 291 EDLTEECEKFGQVRKVVVYDRHP--------------------------------------------------------- 313 (382)
T ss_pred HHHHHHHHHhCCcceEEEeccCC---------------------------------------------------------
Confidence 46677788999999998886655
Q ss_pred cccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccC
Q 019418 204 SYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 252 (341)
Q Consensus 204 ~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~ 252 (341)
.|.+.|.|.+.++|..||+.|+|+.|+| ..+.....+.
T Consensus 314 -------dGvvtV~f~n~eeA~~ciq~m~GR~fdg----Rql~A~i~DG 351 (382)
T KOG1548|consen 314 -------DGVVTVSFRNNEEADQCIQTMDGRWFDG----RQLTASIWDG 351 (382)
T ss_pred -------CceeEEEeCChHHHHHHHHHhcCeeecc----eEEEEEEeCC
Confidence 4788999999999999999999999999 4455555444
No 47
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.69 E-value=1.1e-16 Score=113.32 Aligned_cols=68 Identities=41% Similarity=0.748 Sum_probs=64.6
Q ss_pred EEeCCCCCCCCHHHHHHHhhccCCEeEEEeec--CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEE
Q 019418 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLR 76 (341)
Q Consensus 9 l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~--~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~ 76 (341)
|||+|||+++|+++|.++|++||+|..+.+.. ++..++||||+|.+.++|++|++.|||..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 89999999999999999999999999999966 578899999999999999999999999999999985
No 48
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.68 E-value=3.9e-16 Score=132.35 Aligned_cols=78 Identities=28% Similarity=0.419 Sum_probs=69.9
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec--CCCCCcEEEEEEcCHHHHHHHHHhcCCceeC-C--eEEEEEE
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD-G--YRLRVEL 79 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~--~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~-g--~~l~v~~ 79 (341)
+.++||||-|...-.|||++.+|..||+|.+|.+.. +|.++|||||.|.+.-+|+.||..|+|..-+ | -.|.|++
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 578999999999999999999999999999999976 7899999999999999999999999996543 3 4688888
Q ss_pred ccC
Q 019418 80 AHG 82 (341)
Q Consensus 80 ~~~ 82 (341)
+..
T Consensus 98 ADT 100 (371)
T KOG0146|consen 98 ADT 100 (371)
T ss_pred ccc
Confidence 754
No 49
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.66 E-value=5.9e-16 Score=133.81 Aligned_cols=79 Identities=20% Similarity=0.292 Sum_probs=73.5
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccCCC
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 84 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~~ 84 (341)
..++|||+|||+.+|+++|+++|+.||+|++|.|..++..+|||||+|.++++|+.||. |||..|.|+.|.|.++....
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~~ 81 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDYQ 81 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCCC
Confidence 36899999999999999999999999999999998877778999999999999999996 99999999999999987543
No 50
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.65 E-value=4.2e-15 Score=128.11 Aligned_cols=80 Identities=38% Similarity=0.625 Sum_probs=75.3
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~ 79 (341)
.++-+||||+-|+.+++|..|+..|+.||+|+.|.|+. +|+++|||||+|.++.+...|.+..+|.+|+|+.|.|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 46789999999999999999999999999999999965 899999999999999999999999999999999999998
Q ss_pred ccC
Q 019418 80 AHG 82 (341)
Q Consensus 80 ~~~ 82 (341)
-..
T Consensus 178 ERg 180 (335)
T KOG0113|consen 178 ERG 180 (335)
T ss_pred ccc
Confidence 654
No 51
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.63 E-value=1.6e-15 Score=110.52 Aligned_cols=81 Identities=36% Similarity=0.464 Sum_probs=75.4
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccCC
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~ 83 (341)
.-++-|||.|||+++|.|++.++|.+||+|..|+|-.+...+|.|||.|++..+|.+|++.|+|..++++.|.|-+..+.
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~ 95 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPE 95 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHH
Confidence 45678999999999999999999999999999999777777999999999999999999999999999999999998764
Q ss_pred C
Q 019418 84 R 84 (341)
Q Consensus 84 ~ 84 (341)
.
T Consensus 96 ~ 96 (124)
T KOG0114|consen 96 D 96 (124)
T ss_pred H
Confidence 3
No 52
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.62 E-value=3.5e-15 Score=142.06 Aligned_cols=177 Identities=21% Similarity=0.268 Sum_probs=134.2
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccCC
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~ 83 (341)
+..+.|+|+|||..+..++|..+|..||+|..|.|+.. ---|+|+|.++.+|.+|+..|....+...+|.+.|+...
T Consensus 383 rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~---G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~d 459 (725)
T KOG0110|consen 383 RSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPG---GTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPED 459 (725)
T ss_pred hhcceeeeccCccccccHHHHHHhhcccccceeecCcc---cceeeeeecCccchHHHHHHhchhhhccCccccccChhh
Confidence 46789999999999999999999999999999966522 225999999999999999999999999999999987543
Q ss_pred CCC--CCCCCC----CCC------CC---CCC------C--------CC-CCCCCcceeeeeCCCCCCCHHHHHHHHHHh
Q 019418 84 RRH--SSSMDR----YSS------YS---SGG------S--------RG-VSRRSDYRVLVTGLPSSASWQDLKDHMRRA 133 (341)
Q Consensus 84 ~~~--~~~~~~----~~~------~~---~~~------~--------~~-~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~ 133 (341)
.-. +..... ... .. ..+ . .. ........|||.||+++++.++|..+|...
T Consensus 460 vf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~ 539 (725)
T KOG0110|consen 460 VFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQ 539 (725)
T ss_pred hccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHhc
Confidence 222 110000 000 00 000 0 00 011122349999999999999999999999
Q ss_pred CCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEEEEeecchhhHHhhhcccccccCCCce
Q 019418 134 GDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMT 213 (341)
Q Consensus 134 G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~ 213 (341)
|.|..+.|....+.. +..-+.|+
T Consensus 540 G~VlS~~I~kkkd~~---------------------------------------------------------~k~lSmGf 562 (725)
T KOG0110|consen 540 GTVLSIEISKKKDPA---------------------------------------------------------NKYLSMGF 562 (725)
T ss_pred CeEEEEEEecccccc---------------------------------------------------------ccccccce
Confidence 999999988766511 01123579
Q ss_pred EEEEecChhhHHHHHHhcCcccccccc
Q 019418 214 GIVDYTSYDDMKYAIRKLDRSEFRNAF 240 (341)
Q Consensus 214 gfV~f~~~~~a~~Ai~~l~g~~~~g~~ 240 (341)
|||+|.+.++|+.|++.|+|+.++||.
T Consensus 563 gFVEF~~~e~A~~a~k~lqgtvldGH~ 589 (725)
T KOG0110|consen 563 GFVEFAKPESAQAALKALQGTVLDGHK 589 (725)
T ss_pred eEEEecCHHHHHHHHHHhcCceecCce
Confidence 999999999999999999999999987
No 53
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.61 E-value=4.6e-15 Score=126.24 Aligned_cols=79 Identities=20% Similarity=0.205 Sum_probs=73.7
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccCCC
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 84 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~~ 84 (341)
...+|||+||++.+|+++|+++|+.||+|.+|.|..++...+||||+|.++++|+.|+. |||..|.++.|.|..+....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~y~ 82 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQYE 82 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCcccc
Confidence 56899999999999999999999999999999999888888999999999999999996 99999999999999977543
No 54
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.61 E-value=1.6e-14 Score=132.47 Aligned_cols=123 Identities=24% Similarity=0.287 Sum_probs=96.2
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec-CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccCC
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~-~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~ 83 (341)
....|-+.+||+++|++||.++|+.|+ |+++.+.. +|++.|-|||+|.++|++++|++ .+-..+..+-|.|-.+...
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~~ 86 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGGA 86 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCCc
Confidence 345678899999999999999999995 88887766 59999999999999999999998 5888888999999887654
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeE
Q 019418 84 RRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF 138 (341)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~ 138 (341)
...... ... .+........|.+.+||+.|+++||.++|+-.--|..
T Consensus 87 e~d~~~-~~~--------g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~ 132 (510)
T KOG4211|consen 87 EADWVM-RPG--------GPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPD 132 (510)
T ss_pred cccccc-cCC--------CCCCCCCCceEEecCCCccCcHHHHHHHhcCCccccc
Confidence 432211 100 0111135578999999999999999999996643333
No 55
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.61 E-value=3e-14 Score=128.54 Aligned_cols=171 Identities=25% Similarity=0.359 Sum_probs=130.6
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhh-ccCCEeEEEeec--CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFY-KYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~-~~G~I~~i~i~~--~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~ 81 (341)
..+.+||.|||+++.+++|++||. +.|+|+.|.|.. .++++|||.|+|+++|.+++|++.||...+.|++|.|+...
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 345699999999999999999995 679999999976 68999999999999999999999999999999999998654
Q ss_pred CCCCCC---------CC--------------------------------CCC------CCCCCCC---------------
Q 019418 82 GGRRHS---------SS--------------------------------MDR------YSSYSSG--------------- 99 (341)
Q Consensus 82 ~~~~~~---------~~--------------------------------~~~------~~~~~~~--------------- 99 (341)
...... .. .++ ...+...
T Consensus 123 d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~ 202 (608)
T KOG4212|consen 123 DEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSAS 202 (608)
T ss_pred chhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhh
Confidence 311000 00 000 0000000
Q ss_pred ---CCCCCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCC
Q 019418 100 ---GSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGM 176 (341)
Q Consensus 100 ---~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~ 176 (341)
........-..++||.||...+....|++.|.-.|.|..+.+-.+.. |.+
T Consensus 203 Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKe----------------------G~s----- 255 (608)
T KOG4212|consen 203 FLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKE----------------------GNS----- 255 (608)
T ss_pred hhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccc----------------------ccc-----
Confidence 00011222335789999999999999999999999998888877765 333
Q ss_pred ccccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCcccc
Q 019418 177 FSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEF 236 (341)
Q Consensus 177 ~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~ 236 (341)
++++.++|..+-+|..||..|++.-+
T Consensus 256 ----------------------------------~G~~vi~y~hpveavqaIsml~~~g~ 281 (608)
T KOG4212|consen 256 ----------------------------------RGFAVIEYDHPVEAVQAISMLDRQGL 281 (608)
T ss_pred ----------------------------------CCeeEEEecchHHHHHHHHhhccCCC
Confidence 56999999999999999999997443
No 56
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.60 E-value=3.2e-15 Score=105.91 Aligned_cols=68 Identities=32% Similarity=0.664 Sum_probs=61.6
Q ss_pred EEeCCCCCCCCHHHHHHHhhccCCEeEEEeecC--CCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEE
Q 019418 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP--PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLR 76 (341)
Q Consensus 9 l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~--~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~ 76 (341)
|||+|||+++|+++|.++|+.||.|..|.+... +..+++|||+|.++++|.+|++.++|..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999999999653 56789999999999999999999999999999884
No 57
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=3.7e-15 Score=125.14 Aligned_cols=80 Identities=36% Similarity=0.588 Sum_probs=75.8
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~ 80 (341)
.+.++|-|.||+.+++|++|++||.+||.|..|.|.. ||.++|||||.|.+.++|++||+.|||.-++.-.|.|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 3688999999999999999999999999999999954 8999999999999999999999999999999999999999
Q ss_pred cCC
Q 019418 81 HGG 83 (341)
Q Consensus 81 ~~~ 83 (341)
++.
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 864
No 58
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.59 E-value=2.5e-14 Score=128.14 Aligned_cols=141 Identities=28% Similarity=0.459 Sum_probs=109.7
Q ss_pred CCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccC
Q 019418 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (341)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~ 82 (341)
.++|||+|||.++|+++|.++|.+||.|..|.|.. ++.++|||||+|.++++|..|+..|+|..|.|+.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 59999999999999999999999999999999965 579999999999999999999999999999999999999753
Q ss_pred -CCCCCCCCCC-CCC--CCCCCCCCCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCc
Q 019418 83 -GRRHSSSMDR-YSS--YSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG 146 (341)
Q Consensus 83 -~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~ 146 (341)
.......... ... ................+++.+++..++..++...|..+|.+....+.....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKD 262 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCC
Confidence 1111110000 000 000111223445557889999999999999999999999997666655543
No 59
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.57 E-value=1.1e-14 Score=134.22 Aligned_cols=81 Identities=31% Similarity=0.495 Sum_probs=73.4
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCC--eEEEEEE
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG--YRLRVEL 79 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g--~~l~v~~ 79 (341)
..++|||+|||.++|+++|+++|++||+|+.|.|+. +++++|||||+|.+.++|++||+.||+..|.+ ++|.|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 467899999999999999999999999999999964 67889999999999999999999999999876 7899999
Q ss_pred ccCCCC
Q 019418 80 AHGGRR 85 (341)
Q Consensus 80 ~~~~~~ 85 (341)
+.....
T Consensus 272 a~~~~~ 277 (346)
T TIGR01659 272 AEEHGK 277 (346)
T ss_pred CCcccc
Confidence 876543
No 60
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.55 E-value=9.8e-15 Score=127.34 Aligned_cols=80 Identities=24% Similarity=0.448 Sum_probs=74.5
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec-CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccC
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~-~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~ 82 (341)
.-.++|+|.|||+..-+-||..+|++||+|.+|.|+. ...+|||+||+|++.++|++|-++|||..|.|++|.|..+..
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccch
Confidence 3567999999999999999999999999999999976 457899999999999999999999999999999999999875
Q ss_pred C
Q 019418 83 G 83 (341)
Q Consensus 83 ~ 83 (341)
.
T Consensus 174 r 174 (376)
T KOG0125|consen 174 R 174 (376)
T ss_pred h
Confidence 4
No 61
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.55 E-value=6.8e-15 Score=112.39 Aligned_cols=79 Identities=24% Similarity=0.463 Sum_probs=73.7
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~ 81 (341)
...-|||.|+...+||++|.+.|..||+|++|+|.. +|-.+|||+|+|++.++|+.||..|||..|.|+.|.|.|+-
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 345799999999999999999999999999999965 78889999999999999999999999999999999999986
Q ss_pred CC
Q 019418 82 GG 83 (341)
Q Consensus 82 ~~ 83 (341)
..
T Consensus 151 v~ 152 (170)
T KOG0130|consen 151 VK 152 (170)
T ss_pred ec
Confidence 54
No 62
>PLN03213 repressor of silencing 3; Provisional
Probab=99.54 E-value=2.2e-14 Score=131.22 Aligned_cols=77 Identities=19% Similarity=0.334 Sum_probs=71.4
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec-CCCCCcEEEEEEcCH--HHHHHHHHhcCCceeCCeEEEEEEc
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI-PPRPPGYAFLEFEDY--RDAEDAIRGRDGYNFDGYRLRVELA 80 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~-~~~~~g~afV~F~~~--e~A~~Ai~~lng~~i~g~~l~v~~~ 80 (341)
....+||||||++.+|+++|..+|..||.|..|.|+. +| +|||||+|.+. .++.+||..|||..++|+.|+|..|
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKA 85 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKA 85 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeec
Confidence 4567999999999999999999999999999999985 44 99999999988 7899999999999999999999998
Q ss_pred cC
Q 019418 81 HG 82 (341)
Q Consensus 81 ~~ 82 (341)
++
T Consensus 86 KP 87 (759)
T PLN03213 86 KE 87 (759)
T ss_pred cH
Confidence 64
No 63
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.54 E-value=3.8e-13 Score=120.58 Aligned_cols=168 Identities=18% Similarity=0.220 Sum_probs=130.1
Q ss_pred CCEEEeCCCCCC-CCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccCCC
Q 019418 6 SRTLYVGNLPGD-TRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 84 (341)
Q Consensus 6 ~~~l~V~nLp~~-~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~~ 84 (341)
++.|.|.||... +|++-|..+|+-||+|..|+|..+. +--|+|+|.+...|+.|++.|+|..+.|++|+|.+++...
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk--kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK--KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTN 374 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC--CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcc
Confidence 688999999754 9999999999999999999997643 4689999999999999999999999999999999988654
Q ss_pred CCCCCCC-CC----CCCCCCC--C--------CCCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhh
Q 019418 85 RHSSSMD-RY----SSYSSGG--S--------RGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELH 149 (341)
Q Consensus 85 ~~~~~~~-~~----~~~~~~~--~--------~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~ 149 (341)
-+..... .. ..+.... + ......+..+|.+.|+|..+++|+|+++|.+.|-.+..-......
T Consensus 375 vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd--- 451 (492)
T KOG1190|consen 375 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKD--- 451 (492)
T ss_pred ccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCC---
Confidence 3332211 11 1111111 1 111224446899999999999999999999999765554433322
Q ss_pred hhhhhhcccccchhhhHhhhhccCCCCccccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHH
Q 019418 150 WRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIR 229 (341)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~ 229 (341)
+.++.+++++.++|..|+-
T Consensus 452 -------------------------------------------------------------~kmal~q~~sveeA~~ali 470 (492)
T KOG1190|consen 452 -------------------------------------------------------------RKMALPQLESVEEAIQALI 470 (492)
T ss_pred -------------------------------------------------------------cceeecccCChhHhhhhcc
Confidence 3489999999999999999
Q ss_pred hcCccccccc
Q 019418 230 KLDRSEFRNA 239 (341)
Q Consensus 230 ~l~g~~~~g~ 239 (341)
.++...+...
T Consensus 471 ~~hnh~lgen 480 (492)
T KOG1190|consen 471 DLHNHYLGEN 480 (492)
T ss_pred ccccccCCCC
Confidence 9998888774
No 64
>smart00362 RRM_2 RNA recognition motif.
Probab=99.53 E-value=6.2e-14 Score=98.82 Aligned_cols=71 Identities=44% Similarity=0.778 Sum_probs=65.7
Q ss_pred EEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecC-CCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEE
Q 019418 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP-PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (341)
Q Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~-~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~ 78 (341)
+|||+|||..+++++|.++|.+||+|..+.+..+ +.+.++|||+|.+.++|++|++.|+|..+.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 5899999999999999999999999999998753 5678999999999999999999999999999998873
No 65
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.53 E-value=1.7e-15 Score=121.54 Aligned_cols=82 Identities=30% Similarity=0.531 Sum_probs=75.9
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~ 80 (341)
.++.-|||||||+.+||.||.-+|++||+|.+|.|+. ||+++||||+.|++..+...|+..|||..|.|+.|+|.+.
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 3677899999999999999999999999999999965 8999999999999999999999999999999999999997
Q ss_pred cCCCC
Q 019418 81 HGGRR 85 (341)
Q Consensus 81 ~~~~~ 85 (341)
...+.
T Consensus 113 ~~Yk~ 117 (219)
T KOG0126|consen 113 SNYKK 117 (219)
T ss_pred ccccC
Confidence 65543
No 66
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=6e-14 Score=131.81 Aligned_cols=178 Identities=20% Similarity=0.270 Sum_probs=127.5
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~ 81 (341)
....|||+|||..++++++.++...||++....+.. ++.++||||.+|.++.....|++.|||+.+.++.|.|..+.
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAI 367 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhh
Confidence 567899999999999999999999999999888854 57899999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCC--CCCCCCCCCC--CCCCCCcceeeeeCC--CCCC-CH-------HHHHHHHHHhCCeeEEEEeeC-Cc
Q 019418 82 GGRRHSSSMDR--YSSYSSGGSR--GVSRRSDYRVLVTGL--PSSA-SW-------QDLKDHMRRAGDVCFSQVFRD-RG 146 (341)
Q Consensus 82 ~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~l~V~nl--p~~~-~~-------~~l~~~f~~~G~i~~~~i~~~-~~ 146 (341)
........... ......-... .....+...|.+.|+ |.++ .+ ++++..+.+||.|..|.|+.+ ..
T Consensus 368 ~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~ 447 (500)
T KOG0120|consen 368 VGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPD 447 (500)
T ss_pred ccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCC
Confidence 65443332222 0000000000 111112223333332 1111 22 245566678999999999887 32
Q ss_pred hhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHH
Q 019418 147 ELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKY 226 (341)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~ 226 (341)
.+.+.+-|..||+|.+.++++.
T Consensus 448 ----------------------------------------------------------~~~~~G~GkVFVefas~ed~qr 469 (500)
T KOG0120|consen 448 ----------------------------------------------------------ENPVPGTGKVFVEFADTEDSQR 469 (500)
T ss_pred ----------------------------------------------------------CCcCCCcccEEEEecChHHHHH
Confidence 1112234577999999999999
Q ss_pred HHHhcCcccccccc
Q 019418 227 AIRKLDRSEFRNAF 240 (341)
Q Consensus 227 Ai~~l~g~~~~g~~ 240 (341)
|..+|+|..+.++.
T Consensus 470 A~~~L~GrKF~nRt 483 (500)
T KOG0120|consen 470 AMEELTGRKFANRT 483 (500)
T ss_pred HHHHccCceeCCcE
Confidence 99999999999954
No 67
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.51 E-value=2.5e-14 Score=119.72 Aligned_cols=76 Identities=26% Similarity=0.423 Sum_probs=69.0
Q ss_pred CCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccC
Q 019418 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (341)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~ 82 (341)
-++||||||++.++.|.|+++|++||+|++..|+. +++++||+||+|.+.++|..|++. ..-.|+|++..|.+|.-
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhhh
Confidence 46899999999999999999999999999988854 789999999999999999999985 45678999999998765
No 68
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.48 E-value=5.4e-13 Score=107.85 Aligned_cols=83 Identities=25% Similarity=0.373 Sum_probs=71.0
Q ss_pred CCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCcccccccee
Q 019418 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRI 185 (341)
Q Consensus 106 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~ 185 (341)
.....+|||+|||.++++++|+++|.+||.|..+.|+.+.. ++++
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~---------------------tg~~-------------- 75 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRE---------------------TGRS-------------- 75 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCC---------------------CCCc--------------
Confidence 44457899999999999999999999999999999998865 2333
Q ss_pred EEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccC
Q 019418 186 FFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 252 (341)
Q Consensus 186 ~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~ 252 (341)
+++|||+|.+.++|+.|++.||+..|+| ..+.+.....
T Consensus 76 -------------------------kGfaFV~F~~~e~A~~Al~~lng~~i~G----r~l~V~~a~~ 113 (144)
T PLN03134 76 -------------------------RGFGFVNFNDEGAATAAISEMDGKELNG----RHIRVNPAND 113 (144)
T ss_pred -------------------------ceEEEEEECCHHHHHHHHHHcCCCEECC----EEEEEEeCCc
Confidence 5799999999999999999999999999 4566655543
No 69
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=3.9e-14 Score=117.07 Aligned_cols=82 Identities=32% Similarity=0.561 Sum_probs=77.0
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~ 80 (341)
...++||||+|...+||.-|...|-+||.|.+|.|+. +++.+|||||+|...|+|.+||..||+.+|.|+.|+|.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 3678999999999999999999999999999999976 5788999999999999999999999999999999999999
Q ss_pred cCCCC
Q 019418 81 HGGRR 85 (341)
Q Consensus 81 ~~~~~ 85 (341)
++.+.
T Consensus 88 kP~ki 92 (298)
T KOG0111|consen 88 KPEKI 92 (298)
T ss_pred CCccc
Confidence 88654
No 70
>smart00360 RRM RNA recognition motif.
Probab=99.45 E-value=4.4e-13 Score=94.05 Aligned_cols=68 Identities=41% Similarity=0.710 Sum_probs=63.0
Q ss_pred eCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEE
Q 019418 11 VGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (341)
Q Consensus 11 V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~ 78 (341)
|+|||..+++++|.++|++||+|..|.+.. ++.++|||||+|.+.++|..|+..|++..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 689999999999999999999999999965 46778999999999999999999999999999998873
No 71
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.44 E-value=1e-12 Score=93.06 Aligned_cols=72 Identities=40% Similarity=0.739 Sum_probs=66.2
Q ss_pred EEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCC--CCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q 019418 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPP--RPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (341)
Q Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~--~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~ 79 (341)
+|+|+|||..+++++|.++|..||+|..+.+.... .+.++|||+|.+.++|..|++.+++..+.|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 58999999999999999999999999999997633 5689999999999999999999999999999999864
No 72
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.42 E-value=1.2e-12 Score=88.34 Aligned_cols=56 Identities=36% Similarity=0.622 Sum_probs=51.0
Q ss_pred HHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 019418 23 VEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (341)
Q Consensus 23 l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~ 80 (341)
|.++|++||+|..|.+..+. .++|||+|.+.++|+.|++.|||..+.|++|.|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~--~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK--RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS--TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999997543 699999999999999999999999999999999985
No 73
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=7.5e-12 Score=110.81 Aligned_cols=76 Identities=24% Similarity=0.460 Sum_probs=70.5
Q ss_pred CCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 019418 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (341)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~ 81 (341)
-.+|||..+.++++++||+..|+-||+|..|.+.. .+.++||+||+|.+..+...||..||=..++|+-|+|..+.
T Consensus 210 fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred hheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 46899999999999999999999999999999955 46779999999999999999999999999999999998764
No 74
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.39 E-value=9.5e-13 Score=123.14 Aligned_cols=79 Identities=33% Similarity=0.644 Sum_probs=75.1
Q ss_pred CEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccCC
Q 019418 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (341)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~ 83 (341)
+.|||||||+++++++|.++|+..|.|.+++++. +|.++||||++|.++++|..|++.|||..+.|++|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 8999999999999999999999999999999965 7899999999999999999999999999999999999998765
Q ss_pred CC
Q 019418 84 RR 85 (341)
Q Consensus 84 ~~ 85 (341)
+.
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 54
No 75
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=1.2e-11 Score=106.87 Aligned_cols=75 Identities=19% Similarity=0.232 Sum_probs=68.3
Q ss_pred CCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCcccccccee
Q 019418 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRI 185 (341)
Q Consensus 106 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~ 185 (341)
.++-.||||+-|+.++++..|+..|..||.|..+.|+.+.- ||++
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~v---------------------Tgks-------------- 142 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKV---------------------TGKS-------------- 142 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecc---------------------cCCc--------------
Confidence 35568999999999999999999999999999999999876 5666
Q ss_pred EEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCcccccccc
Q 019418 186 FFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 240 (341)
Q Consensus 186 ~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~ 240 (341)
+|||||+|....+...|.++.+|..|+|+.
T Consensus 143 -------------------------kGYAFIeye~erdm~~AYK~adG~~Idgrr 172 (335)
T KOG0113|consen 143 -------------------------KGYAFIEYEHERDMKAAYKDADGIKIDGRR 172 (335)
T ss_pred -------------------------cceEEEEeccHHHHHHHHHhccCceecCcE
Confidence 569999999999999999999999999954
No 76
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=2.7e-11 Score=112.28 Aligned_cols=137 Identities=23% Similarity=0.345 Sum_probs=95.8
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec------CCCCCc---EEEEEEcCHHHHHHHHHhcCCceeCCeE
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI------PPRPPG---YAFLEFEDYRDAEDAIRGRDGYNFDGYR 74 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~------~~~~~g---~afV~F~~~e~A~~Ai~~lng~~i~g~~ 74 (341)
.-+++||||+||++++|++|...|..||.+ .|.... --.++| |+|+.|+++.++...|.++.- ....
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~-~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~~ 332 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSV-KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEGN 332 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccce-EeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cccc
Confidence 357899999999999999999999999987 444431 113456 999999999999888766543 3334
Q ss_pred EEEEEccCCCCCCCCCCC-----CCCCCCCCCCCCCCCCcceeeeeCCCCCCCHHHHHHHHH-HhCCeeEEEEeeCCc
Q 019418 75 LRVELAHGGRRHSSSMDR-----YSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMR-RAGDVCFSQVFRDRG 146 (341)
Q Consensus 75 l~v~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~-~~G~i~~~~i~~~~~ 146 (341)
+.++...+..+...-.-+ ...|-. ....+.++..||||++||-.++.++|..+|. -||.|.++-|..|+.
T Consensus 333 ~yf~vss~~~k~k~VQIrPW~laDs~fv~--d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k 408 (520)
T KOG0129|consen 333 YYFKVSSPTIKDKEVQIRPWVLADSDFVL--DHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPK 408 (520)
T ss_pred eEEEEecCcccccceeEEeeEeccchhhh--ccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcc
Confidence 444333222211100000 000000 1225566778999999999999999999999 799999999999866
No 77
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.32 E-value=6.6e-12 Score=88.51 Aligned_cols=67 Identities=21% Similarity=0.414 Sum_probs=59.8
Q ss_pred eeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEEEEee
Q 019418 112 VLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFIYFK 191 (341)
Q Consensus 112 l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi~~~ 191 (341)
|||+|||.++++++|+++|.+||.|..+.+..+.. +.
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~----------------------~~--------------------- 37 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSS----------------------GK--------------------- 37 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETT----------------------SS---------------------
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccccc----------------------cc---------------------
Confidence 79999999999999999999999999999988622 11
Q ss_pred cchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccc
Q 019418 192 CMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 239 (341)
Q Consensus 192 ~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~ 239 (341)
..++|||+|.+.++|+.|++.|+|..++|+
T Consensus 38 ------------------~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~ 67 (70)
T PF00076_consen 38 ------------------SKGYAFVEFESEEDAEKALEELNGKKINGR 67 (70)
T ss_dssp ------------------EEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ------------------ccceEEEEEcCHHHHHHHHHHcCCCEECcc
Confidence 146999999999999999999999999994
No 78
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.30 E-value=7.6e-12 Score=109.48 Aligned_cols=79 Identities=16% Similarity=0.164 Sum_probs=70.4
Q ss_pred CCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCcccccccee
Q 019418 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRI 185 (341)
Q Consensus 106 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~ 185 (341)
.....+|+|.|||+...+.||+.+|.+||.|.+|+|+.+..
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNER--------------------------------------- 133 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNER--------------------------------------- 133 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccC---------------------------------------
Confidence 34557999999999999999999999999999999998765
Q ss_pred EEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeec
Q 019418 186 FFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 250 (341)
Q Consensus 186 ~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~ 250 (341)
++||||||+|++.+||++|-++|||..+.| ..|.|...
T Consensus 134 -----------------------GSKGFGFVTmen~~dadRARa~LHgt~VEG----RkIEVn~A 171 (376)
T KOG0125|consen 134 -----------------------GSKGFGFVTMENPADADRARAELHGTVVEG----RKIEVNNA 171 (376)
T ss_pred -----------------------CCCccceEEecChhhHHHHHHHhhcceeec----eEEEEecc
Confidence 348899999999999999999999999999 56776544
No 79
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.30 E-value=4.4e-12 Score=109.26 Aligned_cols=81 Identities=37% Similarity=0.650 Sum_probs=74.4
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccC
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~ 82 (341)
+..+++|+|+||.+.+|.+||++.|++||+|.+|+|. ++|+||.|.-.++|..|+..|||.+|.|+.++|+.+..
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv-----kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~sts 149 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV-----KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTS 149 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeee-----cceeEEEEeeccchHHHHhcccccccccceeeeeeecc
Confidence 3478999999999999999999999999999999999 88999999999999999999999999999999999876
Q ss_pred CCCCCC
Q 019418 83 GRRHSS 88 (341)
Q Consensus 83 ~~~~~~ 88 (341)
.-....
T Consensus 150 rlrtap 155 (346)
T KOG0109|consen 150 RLRTAP 155 (346)
T ss_pred ccccCC
Confidence 544333
No 80
>smart00361 RRM_1 RNA recognition motif.
Probab=99.27 E-value=2.2e-11 Score=86.04 Aligned_cols=58 Identities=28% Similarity=0.462 Sum_probs=51.9
Q ss_pred HHHHHHHhh----ccCCEeEEE-eec---C--CCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEE
Q 019418 20 MREVEDLFY----KYGPIVDID-LKI---P--PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRV 77 (341)
Q Consensus 20 ~~~l~~~F~----~~G~I~~i~-i~~---~--~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v 77 (341)
+++|.++|. +||+|..|. |.. + ++++|||||+|.+.++|.+|+..|||..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678889998 999999995 422 3 788999999999999999999999999999999986
No 81
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.26 E-value=1.7e-10 Score=103.82 Aligned_cols=175 Identities=17% Similarity=0.203 Sum_probs=126.1
Q ss_pred EEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCC--eEEEEEEccCCC-
Q 019418 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG--YRLRVELAHGGR- 84 (341)
Q Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g--~~l~v~~~~~~~- 84 (341)
.++|.|+-+.+|-|-|.++|++||.|..|.-. +..+.=.|+|+|.+++.|+.|...|+|+.|.. ..|+|.+++-..
T Consensus 152 r~iie~m~ypVslDVLHqvFS~fG~VlKIiTF-~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~L 230 (492)
T KOG1190|consen 152 RTIIENMFYPVSLDVLHQVFSKFGFVLKIITF-TKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDL 230 (492)
T ss_pred EEEeccceeeeEHHHHHHHHhhcceeEEEEEE-ecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccc
Confidence 57889999999999999999999999887443 22223359999999999999999999998864 456666543211
Q ss_pred ---------CCCCCCCCCCC----------------------CC----CC-----CCCCCCCC--CcceeeeeCCCCC-C
Q 019418 85 ---------RHSSSMDRYSS----------------------YS----SG-----GSRGVSRR--SDYRVLVTGLPSS-A 121 (341)
Q Consensus 85 ---------~~~~~~~~~~~----------------------~~----~~-----~~~~~~~~--~~~~l~V~nlp~~-~ 121 (341)
..-.....+.+ .. .+ ...+.... ....|.|.||-.+ +
T Consensus 231 nvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~V 310 (492)
T KOG1190|consen 231 NVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAV 310 (492)
T ss_pred eeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhcc
Confidence 00000000000 00 00 00011111 1466778888765 9
Q ss_pred CHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEEEEeecchhhHHhhh
Q 019418 122 SWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFIYFKCMRLSYFKHF 201 (341)
Q Consensus 122 ~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi~~~~~~~s~~~~~ 201 (341)
|.+.|..+|.-||+|..+.|.....
T Consensus 311 T~d~LftlFgvYGdVqRVkil~nkk------------------------------------------------------- 335 (492)
T KOG1190|consen 311 TPDVLFTLFGVYGDVQRVKILYNKK------------------------------------------------------- 335 (492)
T ss_pred chhHHHHHHhhhcceEEEEeeecCC-------------------------------------------------------
Confidence 9999999999999999999987654
Q ss_pred cccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccC
Q 019418 202 RESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 252 (341)
Q Consensus 202 ~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~ 252 (341)
..+.|+|.+...|+-|++.|+|..+.| +.+++...+.
T Consensus 336 ----------d~ALIQmsd~~qAqLA~~hL~g~~l~g----k~lrvt~SKH 372 (492)
T KOG1190|consen 336 ----------DNALIQMSDGQQAQLAMEHLEGHKLYG----KKLRVTLSKH 372 (492)
T ss_pred ----------cceeeeecchhHHHHHHHHhhcceecC----ceEEEeeccC
Confidence 479999999999999999999999999 7788876543
No 82
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.25 E-value=2.4e-11 Score=108.31 Aligned_cols=178 Identities=19% Similarity=0.190 Sum_probs=120.5
Q ss_pred CCEEEeCCCCCCCCHHHHHHHhhccC----CEeEEEe-ec-CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q 019418 6 SRTLYVGNLPGDTRMREVEDLFYKYG----PIVDIDL-KI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (341)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G----~I~~i~i-~~-~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~ 79 (341)
.--|-+.+||+++|+.|+.++|.+-- .++.|-+ .. +|+..|-|||.|..+++|+.||.. |...|+-+-|.+-.
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFR 239 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFR 239 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHH
Confidence 33566799999999999999997321 2233333 33 789999999999999999999974 55555555444422
Q ss_pred ccCC--------C--CCCCCCCCCCCCC-CCCCCCCCCCCcceeeeeCCCCCCCHHHHHHHHHHhC-CeeE--EEEeeCC
Q 019418 80 AHGG--------R--RHSSSMDRYSSYS-SGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAG-DVCF--SQVFRDR 145 (341)
Q Consensus 80 ~~~~--------~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G-~i~~--~~i~~~~ 145 (341)
+... . .........+... .....-++.....+|.+.+||...+.|+|.++|..|. .|.. |.+..+.
T Consensus 240 STaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~ 319 (508)
T KOG1365|consen 240 STAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG 319 (508)
T ss_pred HhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC
Confidence 2100 0 0000000000011 0112234455578999999999999999999999997 4555 6666665
Q ss_pred chhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHH
Q 019418 146 GELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMK 225 (341)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~ 225 (341)
. |+. .|.+||+|.+.++|.
T Consensus 320 q----------------------GrP---------------------------------------SGeAFIqm~nae~a~ 338 (508)
T KOG1365|consen 320 Q----------------------GRP---------------------------------------SGEAFIQMRNAERAR 338 (508)
T ss_pred C----------------------CCc---------------------------------------ChhhhhhhhhhHHHH
Confidence 4 333 358999999999999
Q ss_pred HHHHhcCccccccccccceEEEee
Q 019418 226 YAIRKLDRSEFRNAFSRSYVRVRE 249 (341)
Q Consensus 226 ~Ai~~l~g~~~~g~~~~~~~~~~~ 249 (341)
.|..+.+.+...+ .||.+-.
T Consensus 339 aaaqk~hk~~mk~----RYiEvfp 358 (508)
T KOG1365|consen 339 AAAQKCHKKLMKS----RYIEVFP 358 (508)
T ss_pred HHHHHHHHhhccc----ceEEEee
Confidence 9999988887766 6777643
No 83
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.23 E-value=7.5e-11 Score=95.30 Aligned_cols=80 Identities=19% Similarity=0.246 Sum_probs=71.4
Q ss_pred CcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEE
Q 019418 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFF 187 (341)
Q Consensus 108 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~f 187 (341)
...+|||+|||.++.+.+|+++|.+||.|..++|...+.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g----------------------------------------- 43 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPG----------------------------------------- 43 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCC-----------------------------------------
Confidence 347899999999999999999999999999999876544
Q ss_pred EEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccCCC
Q 019418 188 IYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSRR 254 (341)
Q Consensus 188 i~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~~r 254 (341)
...|+||+|+++.+|+.||..-+|..++| +.++|......+
T Consensus 44 ----------------------~ppfafVeFEd~RDAeDAiygRdGYdydg----~rLRVEfprggr 84 (241)
T KOG0105|consen 44 ----------------------PPPFAFVEFEDPRDAEDAIYGRDGYDYDG----CRLRVEFPRGGR 84 (241)
T ss_pred ----------------------CCCeeEEEecCccchhhhhhcccccccCc----ceEEEEeccCCC
Confidence 13599999999999999999999999999 789998887765
No 84
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.21 E-value=3.2e-11 Score=116.23 Aligned_cols=77 Identities=30% Similarity=0.519 Sum_probs=72.1
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccCCC
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 84 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~~ 84 (341)
-++|||||+|+.+++|.||.++|+.||+|.+|.|.. +++||||.+...++|.+|+.+|+...+.++.|+|.|+....
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~---~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G 496 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP---PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKG 496 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeecc---CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCC
Confidence 368999999999999999999999999999999863 58999999999999999999999999999999999998654
No 85
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.20 E-value=1.1e-09 Score=97.67 Aligned_cols=172 Identities=17% Similarity=0.198 Sum_probs=130.3
Q ss_pred CCCEEEeCCCCCC-CCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccCC
Q 019418 5 SSRTLYVGNLPGD-TRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (341)
Q Consensus 5 ~~~~l~V~nLp~~-~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~ 83 (341)
+.+.+.|-+|... ++-+.|.++|..||.|+.|+++.+. .|.|.|++.++.+.+.|+..||+..+.|.+|.|..++..
T Consensus 286 ~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk--~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~ 363 (494)
T KOG1456|consen 286 PGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK--PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQN 363 (494)
T ss_pred CCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc--cceeEEEcCcHHHHHHHHHHhccCccccceEEEeecccc
Confidence 6788999999865 7889999999999999999998653 689999999999999999999999999999999988754
Q ss_pred CCCCCC---------------CCCCCCCCCCC--CCCCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCC-eeEEEEeeCC
Q 019418 84 RRHSSS---------------MDRYSSYSSGG--SRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGD-VCFSQVFRDR 145 (341)
Q Consensus 84 ~~~~~~---------------~~~~~~~~~~~--~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~-i~~~~i~~~~ 145 (341)
--.+.. +.+...+.... .......+.+.|..-|.|..+|++.|.++|...+. .+.++|....
T Consensus 364 ~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvFp~k 443 (494)
T KOG1456|consen 364 FVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVFPLK 443 (494)
T ss_pred ccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEeeccc
Confidence 221110 00111111111 11122344577888999999999999999998763 4555555443
Q ss_pred chhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHH
Q 019418 146 GELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMK 225 (341)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~ 225 (341)
. .+ ...|.++|++.++|.
T Consensus 444 s----------------------er----------------------------------------SssGllEfe~~s~Av 461 (494)
T KOG1456|consen 444 S----------------------ER----------------------------------------SSSGLLEFENKSDAV 461 (494)
T ss_pred c----------------------cc----------------------------------------cccceeeeehHHHHH
Confidence 3 11 136899999999999
Q ss_pred HHHHhcCcccccccc
Q 019418 226 YAIRKLDRSEFRNAF 240 (341)
Q Consensus 226 ~Ai~~l~g~~~~g~~ 240 (341)
+|+-.||-..+.+..
T Consensus 462 eal~~~NH~pi~~p~ 476 (494)
T KOG1456|consen 462 EALMKLNHYPIEGPN 476 (494)
T ss_pred HHHHHhccccccCCC
Confidence 999999999998855
No 86
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.20 E-value=7.8e-11 Score=90.35 Aligned_cols=76 Identities=21% Similarity=0.340 Sum_probs=68.6
Q ss_pred CCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccce
Q 019418 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFR 184 (341)
Q Consensus 105 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~ 184 (341)
..-.++.|||.++-.++++++|.+.|..||+|..+.+..+.. +|..
T Consensus 68 rSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRR---------------------tGy~------------- 113 (170)
T KOG0130|consen 68 RSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRR---------------------TGYV------------- 113 (170)
T ss_pred cceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccc---------------------cccc-------------
Confidence 344568999999999999999999999999999999999877 4444
Q ss_pred eEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCcccccccc
Q 019418 185 IFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 240 (341)
Q Consensus 185 ~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~ 240 (341)
+||+.|+|++.++|++||..|||..+-|+.
T Consensus 114 --------------------------KGYaLvEYet~keAq~A~~~~Ng~~ll~q~ 143 (170)
T KOG0130|consen 114 --------------------------KGYALVEYETLKEAQAAIDALNGAELLGQN 143 (170)
T ss_pred --------------------------cceeeeehHhHHHHHHHHHhccchhhhCCc
Confidence 679999999999999999999999999976
No 87
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.16 E-value=3.4e-11 Score=102.56 Aligned_cols=80 Identities=23% Similarity=0.449 Sum_probs=74.5
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~ 81 (341)
+.|+|||-.||...++.||.++|-.||.|.+.++.. |++++.|+||.|.++.+|+.||..|||..|+-+.|+|....
T Consensus 284 eGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKR 363 (371)
T KOG0146|consen 284 EGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKR 363 (371)
T ss_pred CcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcC
Confidence 689999999999999999999999999999988854 78999999999999999999999999999999999999877
Q ss_pred CCC
Q 019418 82 GGR 84 (341)
Q Consensus 82 ~~~ 84 (341)
++.
T Consensus 364 Pkd 366 (371)
T KOG0146|consen 364 PKD 366 (371)
T ss_pred ccc
Confidence 643
No 88
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.16 E-value=2e-10 Score=99.74 Aligned_cols=74 Identities=15% Similarity=0.218 Sum_probs=65.2
Q ss_pred cceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEEE
Q 019418 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFI 188 (341)
Q Consensus 109 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi 188 (341)
..+|||+|||+.+++++|+++|..||+|.++.|..+..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~------------------------------------------ 41 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE------------------------------------------ 41 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC------------------------------------------
Confidence 36899999999999999999999999999999988753
Q ss_pred EeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeec
Q 019418 189 YFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 250 (341)
Q Consensus 189 ~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~ 250 (341)
.+++|||+|.+.++|+.|+ .|||..|.| ..+.+...
T Consensus 42 ---------------------~~GfAFVtF~d~eaAe~Al-lLnG~~l~g----r~V~Vt~a 77 (260)
T PLN03120 42 ---------------------RSQIAYVTFKDPQGAETAL-LLSGATIVD----QSVTITPA 77 (260)
T ss_pred ---------------------CCCEEEEEeCcHHHHHHHH-HhcCCeeCC----ceEEEEec
Confidence 1469999999999999999 599999999 55666654
No 89
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.15 E-value=7.1e-11 Score=107.00 Aligned_cols=76 Identities=25% Similarity=0.357 Sum_probs=71.3
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~ 80 (341)
.+..|+|||.|||+++|++.|++-|..||.|..+.|+..++.+| .|.|.++++|+.|+..|||..+.|+.|.|.+.
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhhccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 35789999999999999999999999999999999988888887 89999999999999999999999999999873
No 90
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=6.3e-11 Score=104.67 Aligned_cols=79 Identities=27% Similarity=0.402 Sum_probs=74.5
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~ 81 (341)
|.+.|||..|.+-+|.++|.-+|+.||+|..|.|+. +|.+..||||+|.+.+++++|.-.|++..|+++.|.|.+++
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQ 317 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQ 317 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhh
Confidence 678999999999999999999999999999999965 78889999999999999999999999999999999999987
Q ss_pred CC
Q 019418 82 GG 83 (341)
Q Consensus 82 ~~ 83 (341)
..
T Consensus 318 SV 319 (479)
T KOG0415|consen 318 SV 319 (479)
T ss_pred hh
Confidence 54
No 91
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.12 E-value=2e-11 Score=101.12 Aligned_cols=113 Identities=18% Similarity=0.242 Sum_probs=94.9
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec--CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~--~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~ 81 (341)
...+||||+||...++|+-|.++|-+.|+|..|.|.. ++..+ ||||.|.++-++.-|++.|||..+.+.+|.|++-.
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 4578999999999999999999999999999999965 45556 99999999999999999999999999999988765
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCc
Q 019418 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG 146 (341)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~ 146 (341)
...-. -|...++.+.+.+.|...|.+..+++..+.+
T Consensus 86 G~sha-----------------------------pld~r~~~ei~~~v~s~a~p~~~~R~~~~~d 121 (267)
T KOG4454|consen 86 GNSHA-----------------------------PLDERVTEEILYEVFSQAGPIEGVRIPTDND 121 (267)
T ss_pred CCCcc-----------------------------hhhhhcchhhheeeecccCCCCCcccccccc
Confidence 33210 1445577788888899999888888877655
No 92
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.11 E-value=3.5e-10 Score=106.70 Aligned_cols=173 Identities=21% Similarity=0.339 Sum_probs=134.7
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhcc-----------C-CEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCcee
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKY-----------G-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNF 70 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~-----------G-~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i 70 (341)
+.....+||+|+|+.++++.+..+|..- | .|..|.|. ..++||||+|.+.++|..|+. +++..+
T Consensus 172 t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n---~~~nfa~ie~~s~~~at~~~~-~~~~~f 247 (500)
T KOG0120|consen 172 TRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLN---LEKNFAFIEFRSISEATEAMA-LDGIIF 247 (500)
T ss_pred hhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeec---ccccceeEEecCCCchhhhhc-ccchhh
Confidence 3467789999999999999999999653 3 35566554 347899999999999999987 799999
Q ss_pred CCeEEEEEEccCCCCCCCC---CCCCCCCCCCCCCCCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCch
Q 019418 71 DGYRLRVELAHGGRRHSSS---MDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGE 147 (341)
Q Consensus 71 ~g~~l~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~ 147 (341)
.|..+++.-.......+.. ......+...............++|++||...++.++.+++..||.+....+..+..
T Consensus 248 ~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~- 326 (500)
T KOG0120|consen 248 EGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSA- 326 (500)
T ss_pred CCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccc-
Confidence 9999998765443322211 111122233333444556668899999999999999999999999999988888766
Q ss_pred hhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHH
Q 019418 148 LHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYA 227 (341)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~A 227 (341)
+| ++++++|.+|.+......|
T Consensus 327 --------------------~g---------------------------------------~skg~af~ey~dpsvtd~A 347 (500)
T KOG0120|consen 327 --------------------TG---------------------------------------NSKGFAFCEYCDPSVTDQA 347 (500)
T ss_pred --------------------cc---------------------------------------cccceeeeeeeCCcchhhh
Confidence 22 3477999999999999999
Q ss_pred HHhcCccccccc
Q 019418 228 IRKLDRSEFRNA 239 (341)
Q Consensus 228 i~~l~g~~~~g~ 239 (341)
|..|||..+.+.
T Consensus 348 ~agLnGm~lgd~ 359 (500)
T KOG0120|consen 348 IAGLNGMQLGDK 359 (500)
T ss_pred hcccchhhhcCc
Confidence 999999999884
No 93
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=6.1e-10 Score=94.03 Aligned_cols=80 Identities=28% Similarity=0.312 Sum_probs=70.2
Q ss_pred CCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCcccccccee
Q 019418 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRI 185 (341)
Q Consensus 106 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~ 185 (341)
.....+|.|.||+.++++.+|.++|.+||.|..+.|..+.. +|.+
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~---------------------TG~~-------------- 230 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKE---------------------TGLS-------------- 230 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccc---------------------cCcc--------------
Confidence 34567899999999999999999999999999999999988 6666
Q ss_pred EEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEee
Q 019418 186 FFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 249 (341)
Q Consensus 186 ~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~ 249 (341)
+|||||.|.+.++|++||..|||.-++. .-++|.-
T Consensus 231 -------------------------kGFAFVtF~sRddA~rAI~~LnG~gyd~----LILrvEw 265 (270)
T KOG0122|consen 231 -------------------------KGFAFVTFESRDDAARAIADLNGYGYDN----LILRVEW 265 (270)
T ss_pred -------------------------cceEEEEEecHHHHHHHHHHccCcccce----EEEEEEe
Confidence 5699999999999999999999998887 4455443
No 94
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.11 E-value=6.1e-11 Score=116.04 Aligned_cols=155 Identities=21% Similarity=0.295 Sum_probs=131.9
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecC--CCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP--PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~--~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~ 81 (341)
..+.+||++||+..+++.+|+..|..+|.|.+|.|+.. ++...||||.|.+...+-.|...+.+..|..-.+++.+..
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~ 449 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ 449 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccccc
Confidence 46889999999999999999999999999999999663 5556799999999999999999999988876666666654
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccc
Q 019418 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVN 161 (341)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~ 161 (341)
. .......+++++|++.+....|...|..||.|..+.+.....
T Consensus 450 ~----------------------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~--------------- 492 (975)
T KOG0112|consen 450 P----------------------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQP--------------- 492 (975)
T ss_pred c----------------------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCc---------------
Confidence 2 112236899999999999999999999999999988766544
Q ss_pred hhhhHhhhhccCCCCccccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccc
Q 019418 162 WGEIREAGRILGGGMFSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 241 (341)
Q Consensus 162 ~~~~~~ag~~~g~~~~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~ 241 (341)
+++|+|++...|++|+..|-|..+.|-..
T Consensus 493 ---------------------------------------------------yayi~yes~~~aq~a~~~~rgap~G~P~~ 521 (975)
T KOG0112|consen 493 ---------------------------------------------------YAYIQYESPPAAQAATHDMRGAPLGGPPR 521 (975)
T ss_pred ---------------------------------------------------ceeeecccCccchhhHHHHhcCcCCCCCc
Confidence 89999999999999999999999998763
Q ss_pred cceEEEe
Q 019418 242 RSYVRVR 248 (341)
Q Consensus 242 ~~~~~~~ 248 (341)
+ ++|.
T Consensus 522 r--~rvd 526 (975)
T KOG0112|consen 522 R--LRVD 526 (975)
T ss_pred c--cccc
Confidence 3 4443
No 95
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.09 E-value=1.3e-08 Score=90.82 Aligned_cols=170 Identities=17% Similarity=0.145 Sum_probs=126.2
Q ss_pred CCCCEEEeCCC--CCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeC--CeEEEEEE
Q 019418 4 RSSRTLYVGNL--PGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD--GYRLRVEL 79 (341)
Q Consensus 4 ~~~~~l~V~nL--p~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~--g~~l~v~~ 79 (341)
.++..|.+.=| -+.+|.+-|..++...|+|+.|.|... +--.|.|+|.+.+.|++|.+.|||..|. -.+|+|++
T Consensus 118 ~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIey 195 (494)
T KOG1456|consen 118 TPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEY 195 (494)
T ss_pred CCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cceeeEEeechhHHHHHHHhhcccccccccceeEEEEe
Confidence 35555655544 456999999999999999999999642 3457999999999999999999999885 57899999
Q ss_pred ccCCCCC--------CCC-----------------CCCC--------CCCC-------CC----CC--------------
Q 019418 80 AHGGRRH--------SSS-----------------MDRY--------SSYS-------SG----GS-------------- 101 (341)
Q Consensus 80 ~~~~~~~--------~~~-----------------~~~~--------~~~~-------~~----~~-------------- 101 (341)
|++.+-. +.. ..++ ..+. .+ ..
T Consensus 196 AkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~ 275 (494)
T KOG1456|consen 196 AKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDG 275 (494)
T ss_pred cCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccC
Confidence 9764310 000 0000 0011 00 00
Q ss_pred ----CCCCCCCcceeeeeCCCCC-CCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCC
Q 019418 102 ----RGVSRRSDYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGM 176 (341)
Q Consensus 102 ----~~~~~~~~~~l~V~nlp~~-~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~ 176 (341)
.+....+...+.|-+|... ++-+.|-.+|-.||.|..+..++...
T Consensus 276 ~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~------------------------------ 325 (494)
T KOG1456|consen 276 RGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP------------------------------ 325 (494)
T ss_pred CCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc------------------------------
Confidence 0012233466889999876 67888999999999999999988766
Q ss_pred ccccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCcccccccc
Q 019418 177 FSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 240 (341)
Q Consensus 177 ~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~ 240 (341)
+.|.|++.+..+.+.|+..||+..+-|.+
T Consensus 326 -----------------------------------gtamVemgd~~aver~v~hLnn~~lfG~k 354 (494)
T KOG1456|consen 326 -----------------------------------GTAMVEMGDAYAVERAVTHLNNIPLFGGK 354 (494)
T ss_pred -----------------------------------ceeEEEcCcHHHHHHHHHHhccCccccce
Confidence 68999999999999999999999888843
No 96
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.09 E-value=3.4e-10 Score=79.91 Aligned_cols=67 Identities=25% Similarity=0.452 Sum_probs=57.8
Q ss_pred eeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEEEEee
Q 019418 112 VLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFIYFK 191 (341)
Q Consensus 112 l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi~~~ 191 (341)
|+|+|||..+++++|.++|..+|.|..+.+..... +.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~----------------------~~--------------------- 37 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD----------------------GQ--------------------- 37 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT----------------------SS---------------------
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec----------------------cc---------------------
Confidence 79999999999999999999999999999987643 11
Q ss_pred cchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccc
Q 019418 192 CMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 239 (341)
Q Consensus 192 ~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~ 239 (341)
.+++|||+|.+.++|..|+..+++..++|+
T Consensus 38 ------------------~~~~a~v~f~~~~~a~~al~~~~~~~~~g~ 67 (70)
T PF14259_consen 38 ------------------SRGFAFVEFSSEEDAKRALELLNGKEIDGR 67 (70)
T ss_dssp ------------------EEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ------------------cCCEEEEEeCCHHHHHHHHHHCCCcEECCE
Confidence 146999999999999999999999999994
No 97
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.07 E-value=3.7e-10 Score=93.18 Aligned_cols=79 Identities=24% Similarity=0.349 Sum_probs=71.9
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhcc-CCEeEEEe---ecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKY-GPIVDIDL---KIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~-G~I~~i~i---~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~ 80 (341)
....+||..||.-+.+.+|..+|.+| |.|..+.+ +.||.++|||||+|.+++.|+-|.+.||+..|+++.|.|.+-
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 45678999999999999999999999 78888888 348999999999999999999999999999999999999987
Q ss_pred cCC
Q 019418 81 HGG 83 (341)
Q Consensus 81 ~~~ 83 (341)
.+.
T Consensus 128 ppe 130 (214)
T KOG4208|consen 128 PPE 130 (214)
T ss_pred Cch
Confidence 654
No 98
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.06 E-value=9.7e-10 Score=93.94 Aligned_cols=75 Identities=19% Similarity=0.289 Sum_probs=65.7
Q ss_pred cceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEEE
Q 019418 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFI 188 (341)
Q Consensus 109 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi 188 (341)
.++|+|+||++.+++++|+++|..||+|.+|.|..+..
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~e------------------------------------------ 42 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGE------------------------------------------ 42 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCC------------------------------------------
Confidence 47999999999999999999999999999999998865
Q ss_pred EeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeecc
Q 019418 189 YFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 251 (341)
Q Consensus 189 ~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~ 251 (341)
.+++|||+|.++++|+.|+ .|+|..|.++ .|.+....
T Consensus 43 ---------------------t~gfAfVtF~d~~aaetAl-lLnGa~l~d~----~I~It~~~ 79 (243)
T PLN03121 43 ---------------------YACTAYVTFKDAYALETAV-LLSGATIVDQ----RVCITRWG 79 (243)
T ss_pred ---------------------cceEEEEEECCHHHHHHHH-hcCCCeeCCc----eEEEEeCc
Confidence 1359999999999999998 8999999994 56665543
No 99
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.06 E-value=9.2e-10 Score=80.65 Aligned_cols=79 Identities=19% Similarity=0.222 Sum_probs=67.9
Q ss_pred CCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccce
Q 019418 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFR 184 (341)
Q Consensus 105 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~ 184 (341)
+......|||.|||+++|.+++.++|.+||.|..++|--...
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~-------------------------------------- 55 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE-------------------------------------- 55 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC--------------------------------------
Confidence 334446799999999999999999999999999999876544
Q ss_pred eEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeec
Q 019418 185 IFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 250 (341)
Q Consensus 185 ~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~ 250 (341)
-+|.|||.|++..+|.+|++.|+|..+.+ .++.|-.+
T Consensus 56 -------------------------TrGTAFVVYedi~dAk~A~dhlsg~n~~~----ryl~vlyy 92 (124)
T KOG0114|consen 56 -------------------------TRGTAFVVYEDIFDAKKACDHLSGYNVDN----RYLVVLYY 92 (124)
T ss_pred -------------------------cCceEEEEehHhhhHHHHHHHhcccccCC----ceEEEEec
Confidence 15789999999999999999999999999 67776544
No 100
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.04 E-value=4.5e-10 Score=94.43 Aligned_cols=76 Identities=16% Similarity=0.241 Sum_probs=64.7
Q ss_pred cceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEEE
Q 019418 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFI 188 (341)
Q Consensus 109 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi 188 (341)
-++|||+||+.++..++|+++|++||+|+++.|+.|.. +|++
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~---------------------t~rs----------------- 53 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKN---------------------TGRS----------------- 53 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccC---------------------Cccc-----------------
Confidence 36899999999999999999999999999999999988 6777
Q ss_pred EeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceE
Q 019418 189 YFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 245 (341)
Q Consensus 189 ~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 245 (341)
+|+|||+|.+.+.|..|++.-| -.|+|+...+.+
T Consensus 54 ----------------------kGyGfVTf~d~~aa~rAc~dp~-piIdGR~aNcnl 87 (247)
T KOG0149|consen 54 ----------------------KGYGFVTFRDAEAATRACKDPN-PIIDGRKANCNL 87 (247)
T ss_pred ----------------------cceeeEEeecHHHHHHHhcCCC-Ccccccccccch
Confidence 6699999999999999997655 456776543433
No 101
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.04 E-value=3.6e-10 Score=91.27 Aligned_cols=80 Identities=20% Similarity=0.404 Sum_probs=70.4
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeE----EEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVD----IDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~----i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~ 80 (341)
.+.+|||+||.+.++|..|.+.|+.||.|.. +....++.++|||||.|++.|.+.+|+..|||+.+..++|.|.++
T Consensus 95 vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya 174 (203)
T KOG0131|consen 95 VGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYA 174 (203)
T ss_pred ccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEE
Confidence 4568999999999999999999999998765 222336889999999999999999999999999999999999998
Q ss_pred cCCC
Q 019418 81 HGGR 84 (341)
Q Consensus 81 ~~~~ 84 (341)
....
T Consensus 175 ~k~~ 178 (203)
T KOG0131|consen 175 FKKD 178 (203)
T ss_pred EecC
Confidence 7543
No 102
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.04 E-value=6.4e-10 Score=98.35 Aligned_cols=77 Identities=30% Similarity=0.554 Sum_probs=68.7
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHh-cCCceeCCeEEEEEEcc
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRG-RDGYNFDGYRLRVELAH 81 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~-lng~~i~g~~l~v~~~~ 81 (341)
.+..++|||+||-..+++.+|.++|.+||+|..|.+... +++|||+|.+.++|+.|.+. +|...|+|+.|.|.|..
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~---~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~ 301 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR---KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGR 301 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc---cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCC
Confidence 356789999999999999999999999999999999642 67999999999999999865 56677899999999988
Q ss_pred C
Q 019418 82 G 82 (341)
Q Consensus 82 ~ 82 (341)
+
T Consensus 302 ~ 302 (377)
T KOG0153|consen 302 P 302 (377)
T ss_pred C
Confidence 7
No 103
>PLN03213 repressor of silencing 3; Provisional
Probab=99.04 E-value=9.2e-10 Score=101.33 Aligned_cols=76 Identities=17% Similarity=0.290 Sum_probs=66.2
Q ss_pred CcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEE
Q 019418 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFF 187 (341)
Q Consensus 108 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~f 187 (341)
...+|||+||+..+++++|..+|.+||.|..|.|++...
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETG----------------------------------------- 47 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKG----------------------------------------- 47 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccC-----------------------------------------
Confidence 347999999999999999999999999999999984432
Q ss_pred EEeecchhhHHhhhcccccccCCCceEEEEecCh--hhHHHHHHhcCccccccccccceEEEeecc
Q 019418 188 IYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSY--DDMKYAIRKLDRSEFRNAFSRSYVRVREYD 251 (341)
Q Consensus 188 i~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~--~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~ 251 (341)
++||||+|.+. .++.+||..|||..+.| ..++|...+
T Consensus 48 -----------------------RGFAFVEMssdddaEeeKAISaLNGAEWKG----R~LKVNKAK 86 (759)
T PLN03213 48 -----------------------RSFAYIDFSPSSTNSLTKLFSTYNGCVWKG----GRLRLEKAK 86 (759)
T ss_pred -----------------------CceEEEEecCCcHHHHHHHHHHhcCCeecC----ceeEEeecc
Confidence 67999999987 67999999999999999 567776543
No 104
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=99.01 E-value=7.2e-10 Score=106.03 Aligned_cols=79 Identities=24% Similarity=0.442 Sum_probs=72.9
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecC------CCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEE
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP------PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~------~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~ 78 (341)
.+++|||+||++.++++.|...|+.||+|..|+|++. .....|+||.|.+..+|+.|++.|+|..+.+..+++.
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~g 252 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLG 252 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeec
Confidence 5689999999999999999999999999999999872 3567899999999999999999999999999999999
Q ss_pred EccCC
Q 019418 79 LAHGG 83 (341)
Q Consensus 79 ~~~~~ 83 (341)
|++..
T Consensus 253 Wgk~V 257 (877)
T KOG0151|consen 253 WGKAV 257 (877)
T ss_pred ccccc
Confidence 98654
No 105
>smart00362 RRM_2 RNA recognition motif.
Probab=98.99 E-value=2.6e-09 Score=74.77 Aligned_cols=67 Identities=22% Similarity=0.365 Sum_probs=59.0
Q ss_pred eeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEEEEe
Q 019418 111 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFIYF 190 (341)
Q Consensus 111 ~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi~~ 190 (341)
+|+|.|||..+++++|+++|.+||.|..+.+..+..
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~-------------------------------------------- 36 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTG-------------------------------------------- 36 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC--------------------------------------------
Confidence 589999999999999999999999999998876541
Q ss_pred ecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccc
Q 019418 191 KCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 239 (341)
Q Consensus 191 ~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~ 239 (341)
...++|||+|.+.++|+.|+..+++..+.|+
T Consensus 37 ------------------~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~ 67 (72)
T smart00362 37 ------------------KSKGFAFVEFESEEDAEKAIEALNGTKLGGR 67 (72)
T ss_pred ------------------CCCceEEEEeCCHHHHHHHHHHhCCcEECCE
Confidence 1146999999999999999999999999883
No 106
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.89 E-value=5.8e-09 Score=90.28 Aligned_cols=78 Identities=26% Similarity=0.455 Sum_probs=71.1
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec--CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccC
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~--~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~ 82 (341)
-..+|+|.|||+.+++++|+++|..||+++.+-|.. .|.+.|.|-|.|...++|..||+.|||..++|+.|++.....
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 347899999999999999999999999888887755 688999999999999999999999999999999999987654
No 107
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.89 E-value=5.6e-09 Score=97.69 Aligned_cols=81 Identities=26% Similarity=0.439 Sum_probs=73.5
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~ 81 (341)
-.++|||.+|...+-..+|++||++||+|+-.+|+. +...+.|+||++.+.++|.+||..|+-+.|.|+.|.|+.++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 457999999999999999999999999999999866 34558899999999999999999999999999999999987
Q ss_pred CCCC
Q 019418 82 GGRR 85 (341)
Q Consensus 82 ~~~~ 85 (341)
..+.
T Consensus 484 NEp~ 487 (940)
T KOG4661|consen 484 NEPG 487 (940)
T ss_pred cCcc
Confidence 6543
No 108
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.86 E-value=1.1e-08 Score=95.56 Aligned_cols=78 Identities=29% Similarity=0.583 Sum_probs=67.6
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~ 81 (341)
...+|||+|||+++++++|+++|..||+|+...|.. .+....||||+|.+.++++.||++ +-..|++++|.|+...
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 345699999999999999999999999999888843 244459999999999999999996 6888999999999876
Q ss_pred CC
Q 019418 82 GG 83 (341)
Q Consensus 82 ~~ 83 (341)
..
T Consensus 366 ~~ 367 (419)
T KOG0116|consen 366 PG 367 (419)
T ss_pred cc
Confidence 53
No 109
>smart00360 RRM RNA recognition motif.
Probab=98.86 E-value=1.4e-08 Score=70.70 Aligned_cols=66 Identities=21% Similarity=0.420 Sum_probs=56.9
Q ss_pred eeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEEEEeecc
Q 019418 114 VTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFIYFKCM 193 (341)
Q Consensus 114 V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi~~~~~ 193 (341)
|+|||..+++++|+++|.+||.|..+.+..+.. ++.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~---------------------~~~----------------------- 36 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKD---------------------TGK----------------------- 36 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCC---------------------CCC-----------------------
Confidence 579999999999999999999999999887643 111
Q ss_pred hhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccc
Q 019418 194 RLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 239 (341)
Q Consensus 194 ~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~ 239 (341)
..++|||+|.+.++|..|+..|++..+.|+
T Consensus 37 ----------------~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~ 66 (71)
T smart00360 37 ----------------SKGFAFVEFESEEDAEKALEALNGKELDGR 66 (71)
T ss_pred ----------------CCceEEEEeCCHHHHHHHHHHcCCCeeCCc
Confidence 246999999999999999999999999883
No 110
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.86 E-value=4.2e-09 Score=94.79 Aligned_cols=81 Identities=23% Similarity=0.518 Sum_probs=72.5
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~ 81 (341)
...+|||++||.++++++|++.|.+||.|..+.++. +..++||+||+|.+++++.+++. +.-+.|+|+.+.|..|.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeecc
Confidence 356999999999999999999999999999988866 56789999999999999999987 68899999999999998
Q ss_pred CCCCC
Q 019418 82 GGRRH 86 (341)
Q Consensus 82 ~~~~~ 86 (341)
+....
T Consensus 175 pk~~~ 179 (311)
T KOG4205|consen 175 PKEVM 179 (311)
T ss_pred chhhc
Confidence 76543
No 111
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.85 E-value=5.1e-08 Score=90.23 Aligned_cols=75 Identities=24% Similarity=0.302 Sum_probs=61.2
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeE-EEeec--CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVD-IDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~-i~i~~--~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~ 80 (341)
+.-.|-+.+||+.+|++||.++|+..-.|.. |.++. .+++.|-|||+|++++.|++||.. |...|..+-|.|-.+
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRS 179 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehh
Confidence 5568999999999999999999998754444 44433 467889999999999999999984 777788888888654
No 112
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.85 E-value=2.7e-08 Score=69.93 Aligned_cols=68 Identities=21% Similarity=0.361 Sum_probs=60.4
Q ss_pred eeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEEEEe
Q 019418 111 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFIYF 190 (341)
Q Consensus 111 ~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi~~ 190 (341)
+|+|.|||..+++++|+++|..+|.|..+.+..+.. +
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~----------------------~--------------------- 37 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKD----------------------T--------------------- 37 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCC----------------------C---------------------
Confidence 489999999999999999999999999999987764 0
Q ss_pred ecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccc
Q 019418 191 KCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 239 (341)
Q Consensus 191 ~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~ 239 (341)
...+++||+|.+.++|..|+..+++..+.|.
T Consensus 38 ------------------~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~ 68 (74)
T cd00590 38 ------------------KSKGFAFVEFEDEEDAEKALEALNGKELGGR 68 (74)
T ss_pred ------------------CcceEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 1246999999999999999999999998884
No 113
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=98.85 E-value=8.1e-09 Score=78.70 Aligned_cols=81 Identities=20% Similarity=0.179 Sum_probs=68.4
Q ss_pred CCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeE
Q 019418 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIF 186 (341)
Q Consensus 107 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~ 186 (341)
....+|||+||+..+++++|.++|.++|+|..+.+-.+.. +-..
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~---------------------kktp--------------- 77 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRF---------------------KKTP--------------- 77 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccC---------------------CcCc---------------
Confidence 3457999999999999999999999999999998887765 1111
Q ss_pred EEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeecc
Q 019418 187 FIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 251 (341)
Q Consensus 187 fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~ 251 (341)
=|+.||+|-+.++|..|++-++|+.++. ..|++..+.
T Consensus 78 ------------------------CGFCFVeyy~~~dA~~AlryisgtrLdd----r~ir~D~D~ 114 (153)
T KOG0121|consen 78 ------------------------CGFCFVEYYSRDDAEDALRYISGTRLDD----RPIRIDWDA 114 (153)
T ss_pred ------------------------cceEEEEEecchhHHHHHHHhccCcccc----cceeeeccc
Confidence 2589999999999999999999999998 667766543
No 114
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.82 E-value=4.4e-10 Score=90.70 Aligned_cols=75 Identities=17% Similarity=0.260 Sum_probs=68.1
Q ss_pred ceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEEEE
Q 019418 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFIY 189 (341)
Q Consensus 110 ~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi~ 189 (341)
.-|||+|||.++|+.||.-+|++||+|+++.+.+|.. ||++
T Consensus 36 A~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~---------------------TGKS------------------ 76 (219)
T KOG0126|consen 36 AYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKK---------------------TGKS------------------ 76 (219)
T ss_pred eEEEECCCcccccCCcEEEEeeccCceEEEEEEecCC---------------------CCcc------------------
Confidence 5799999999999999999999999999999999988 7777
Q ss_pred eecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEe
Q 019418 190 FKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 248 (341)
Q Consensus 190 ~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~ 248 (341)
+||+|++|++.....-|+.-|||..+.| .-|+|.
T Consensus 77 ---------------------KGFaFLcYEDQRSTILAVDN~NGiki~g----RtirVD 110 (219)
T KOG0126|consen 77 ---------------------KGFAFLCYEDQRSTILAVDNLNGIKILG----RTIRVD 110 (219)
T ss_pred ---------------------cceEEEEecCccceEEEEeccCCceecc----eeEEee
Confidence 5699999999999999999999999999 456653
No 115
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=4.1e-09 Score=87.61 Aligned_cols=87 Identities=20% Similarity=0.187 Sum_probs=74.6
Q ss_pred CCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeE
Q 019418 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIF 186 (341)
Q Consensus 107 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~ 186 (341)
....+|||++|..++++.-|...|-+||+|.++.++.|..
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDye---------------------------------------- 47 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYE---------------------------------------- 47 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchh----------------------------------------
Confidence 3457999999999999999999999999999999988755
Q ss_pred EEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccCCCCcC
Q 019418 187 FIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSRRSYS 257 (341)
Q Consensus 187 fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~~r~~s 257 (341)
+-.++++|||+|.-.+||.+||..||+.++-| .-|+|......+-..
T Consensus 48 --------------------sqkHRgFgFVefe~aEDAaaAiDNMnesEL~G----rtirVN~AkP~kike 94 (298)
T KOG0111|consen 48 --------------------SQKHRGFGFVEFEEAEDAAAAIDNMNESELFG----RTIRVNLAKPEKIKE 94 (298)
T ss_pred --------------------cccccceeEEEeeccchhHHHhhcCchhhhcc----eeEEEeecCCccccC
Confidence 22346799999999999999999999999999 668887776655333
No 116
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.77 E-value=9.7e-09 Score=89.12 Aligned_cols=80 Identities=25% Similarity=0.429 Sum_probs=73.2
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~ 79 (341)
+.+.+.+||+|+.+.+|.+++..+|+.||.|..|.|+. .++++|||||+|.+.+.++.|+. |||..|.|+.|.|.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 45788999999999999999999999999998888854 56899999999999999999999 999999999999999
Q ss_pred ccCC
Q 019418 80 AHGG 83 (341)
Q Consensus 80 ~~~~ 83 (341)
..-.
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 7654
No 117
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.77 E-value=5e-09 Score=98.25 Aligned_cols=72 Identities=33% Similarity=0.501 Sum_probs=66.2
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEE
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLR 76 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~ 76 (341)
.-++.+|+|-|||..|++++|..+|+.||+|..|+. +....|.+||+|.|..+|++|++.|++..|.|+.|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~--t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE--TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc--ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 347889999999999999999999999999999655 455689999999999999999999999999999988
No 118
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.75 E-value=1.5e-09 Score=98.12 Aligned_cols=144 Identities=24% Similarity=0.368 Sum_probs=115.1
Q ss_pred CEEEeCCCCCCCCHHHHHHHhhcc--CCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCc-eeCCeEEEEEEccCC
Q 019418 7 RTLYVGNLPGDTRMREVEDLFYKY--GPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY-NFDGYRLRVELAHGG 83 (341)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~--G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~-~i~g~~l~v~~~~~~ 83 (341)
..||++||.+.++..+|..+|... |--..+-|+ .|||||.+.+...|.+|++.++|. .+.|+.+.|.+..+.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k-----~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK-----SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee-----cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 469999999999999999999754 211122222 689999999999999999999995 578999999998765
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchh
Q 019418 84 RRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWG 163 (341)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~ 163 (341)
+... ..+.|.|+|+...|+-|..++.+||.+..|.......
T Consensus 77 kqrs----------------------rk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~----------------- 117 (584)
T KOG2193|consen 77 KQRS----------------------RKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDS----------------- 117 (584)
T ss_pred HHHh----------------------hhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccch-----------------
Confidence 4322 4689999999999999999999999998887643222
Q ss_pred hhHhhhhccCCCCccccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCcccccccc
Q 019418 164 EIREAGRILGGGMFSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 240 (341)
Q Consensus 164 ~~~~ag~~~g~~~~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~ 240 (341)
. ....-|+|.+.+.+..||.+|+|-.+..+.
T Consensus 118 -----e-----------------------------------------tavvnvty~~~~~~~~ai~kl~g~Q~en~~ 148 (584)
T KOG2193|consen 118 -----E-----------------------------------------TAVVNVTYSAQQQHRQAIHKLNGPQLENQH 148 (584)
T ss_pred -----H-----------------------------------------HHHHHHHHHHHHHHHHHHHhhcchHhhhhh
Confidence 0 113456788899999999999999887754
No 119
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.72 E-value=5.5e-08 Score=86.82 Aligned_cols=78 Identities=24% Similarity=0.403 Sum_probs=68.3
Q ss_pred cceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEEE
Q 019418 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFI 188 (341)
Q Consensus 109 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi 188 (341)
..+|||+|||.++++++|.++|.+||.|..+.+..+.. +|.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~---------------------~~~~----------------- 156 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRE---------------------TGKS----------------- 156 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccc---------------------cCcc-----------------
Confidence 58999999999999999999999999999999988864 2333
Q ss_pred EeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeec
Q 019418 189 YFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 250 (341)
Q Consensus 189 ~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~ 250 (341)
+++|||+|.+.++|..|++.+++..+.| ..+.+...
T Consensus 157 ----------------------~g~~~v~f~~~~~~~~a~~~~~~~~~~~----~~~~v~~~ 192 (306)
T COG0724 157 ----------------------RGFAFVEFESEESAEKAIEELNGKELEG----RPLRVQKA 192 (306)
T ss_pred ----------------------CceEEEEecCHHHHHHHHHHcCCCeECC----ceeEeecc
Confidence 5699999999999999999999999999 55665553
No 120
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.70 E-value=1.5e-09 Score=106.08 Aligned_cols=137 Identities=23% Similarity=0.311 Sum_probs=114.7
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEee---cCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK---IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~---~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~ 81 (341)
...++||.||+..+.+.+|...|..+|.|..+.+. ..++.+|+|||+|..+++|.+||....++.+. +
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g---------K 736 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG---------K 736 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh---------h
Confidence 45689999999999999999999999988877774 36888999999999999999999966655444 1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccc
Q 019418 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVN 161 (341)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~ 161 (341)
..++|.|+|+..|.++|+.++..+|.++.+.++....
T Consensus 737 ----------------------------~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~--------------- 773 (881)
T KOG0128|consen 737 ----------------------------ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRA--------------- 773 (881)
T ss_pred ----------------------------hhhheeCCCCCCchHHHHhhccccCCccccchhhhhc---------------
Confidence 3789999999999999999999999999988776654
Q ss_pred hhhhHhhhhccCCCCccccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccc
Q 019418 162 WGEIREAGRILGGGMFSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 239 (341)
Q Consensus 162 ~~~~~~ag~~~g~~~~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~ 239 (341)
|+. +|.++|.|.+..+|..+.-.++...++-.
T Consensus 774 -------gkp---------------------------------------kg~a~v~y~~ea~~s~~~~s~d~~~~rE~ 805 (881)
T KOG0128|consen 774 -------GKP---------------------------------------KGKARVDYNTEADASRKVASVDVAGKREN 805 (881)
T ss_pred -------ccc---------------------------------------ccceeccCCCcchhhhhcccchhhhhhhc
Confidence 333 56889999999999988877776665543
No 121
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.67 E-value=4.2e-08 Score=92.22 Aligned_cols=80 Identities=26% Similarity=0.356 Sum_probs=71.5
Q ss_pred ceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEEEE
Q 019418 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFIY 189 (341)
Q Consensus 110 ~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi~ 189 (341)
..|||+|+|+++++++|.++|...|.|..++++.|+. +|+.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~---------------------tG~~------------------ 59 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRE---------------------TGKP------------------ 59 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeeccccc---------------------CCCc------------------
Confidence 7899999999999999999999999999999999988 5665
Q ss_pred eecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccCC
Q 019418 190 FKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 253 (341)
Q Consensus 190 ~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~~ 253 (341)
+||||++|.+.++|..|++.|||.++.| ..+++......
T Consensus 60 ---------------------~G~~f~~~~~~~~~~~a~~~lNg~~~~g----r~l~v~~~~~~ 98 (435)
T KOG0108|consen 60 ---------------------KGFGFCEFTDEETAERAIRNLNGAEFNG----RKLRVNYASNR 98 (435)
T ss_pred ---------------------CceeeEecCchhhHHHHHHhcCCcccCC----ceEEeeccccc
Confidence 5699999999999999999999999999 56666655443
No 122
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.65 E-value=3.7e-08 Score=88.35 Aligned_cols=163 Identities=19% Similarity=0.216 Sum_probs=122.2
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~ 81 (341)
..+++|++++..++.+.++..+|..+|.+..+.+.. ....++++.|.|+..+.+..|+.......+.+..+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 478999999999999999999999999877776633 56779999999999999999998543345666655554443
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCcceee-eeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhccccc
Q 019418 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVL-VTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEV 160 (341)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~ 160 (341)
....... ............+++ |.||+..++.++|++.|..+|.|..+.++....
T Consensus 167 ~~~~~~~----------n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~-------------- 222 (285)
T KOG4210|consen 167 RRGLRPK----------NKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEE-------------- 222 (285)
T ss_pred ccccccc----------chhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCC--------------
Confidence 3221000 001112222234555 999999999999999999999999999988776
Q ss_pred chhhhHhhhhccCCCCccccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCcccccc
Q 019418 161 NWGEIREAGRILGGGMFSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRN 238 (341)
Q Consensus 161 ~~~~~~~ag~~~g~~~~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g 238 (341)
++.. +++++|+|.+...+..++.. ....+.+
T Consensus 223 -------s~~~---------------------------------------kg~a~~~~~~~~~~~~~~~~-~~~~~~~ 253 (285)
T KOG4210|consen 223 -------SGDS---------------------------------------KGFAYVDFSAGNSKKLALND-QTRSIGG 253 (285)
T ss_pred -------ccch---------------------------------------hhhhhhhhhhchhHHHHhhc-ccCcccC
Confidence 3333 56899999999999999887 6777776
No 123
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.61 E-value=1.7e-07 Score=62.87 Aligned_cols=28 Identities=25% Similarity=0.440 Sum_probs=26.5
Q ss_pred ceEEEEecChhhHHHHHHhcCccccccc
Q 019418 212 MTGIVDYTSYDDMKYAIRKLDRSEFRNA 239 (341)
Q Consensus 212 ~~gfV~f~~~~~a~~Ai~~l~g~~~~g~ 239 (341)
+++||+|.+.++|..|+..|||..+.|+
T Consensus 22 ~~a~V~f~~~~~A~~a~~~l~~~~~~g~ 49 (56)
T PF13893_consen 22 GFAFVEFASVEDAQKAIEQLNGRQFNGR 49 (56)
T ss_dssp TEEEEEESSHHHHHHHHHHHTTSEETTE
T ss_pred CEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 4899999999999999999999999994
No 124
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.59 E-value=3.3e-07 Score=68.14 Aligned_cols=76 Identities=18% Similarity=0.214 Sum_probs=63.6
Q ss_pred CEEEeCCCCCCCCHHHHHHHhhcc--CCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeC----CeEEEE
Q 019418 7 RTLYVGNLPGDTRMREVEDLFYKY--GPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD----GYRLRV 77 (341)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~--G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~----g~~l~v 77 (341)
+||-|+|||...|.++|.+++... |..--+.|+. ++.+.|||||.|.+++.|....+.++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 699999999999999999998653 5655566655 5678999999999999999999999998875 567777
Q ss_pred EEccC
Q 019418 78 ELAHG 82 (341)
Q Consensus 78 ~~~~~ 82 (341)
.+|.-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 77763
No 125
>smart00361 RRM_1 RNA recognition motif.
Probab=98.59 E-value=2.1e-07 Score=65.61 Aligned_cols=29 Identities=17% Similarity=0.188 Sum_probs=27.5
Q ss_pred CceEEEEecChhhHHHHHHhcCccccccc
Q 019418 211 GMTGIVDYTSYDDMKYAIRKLDRSEFRNA 239 (341)
Q Consensus 211 ~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~ 239 (341)
+|+|||+|.+.++|.+|+..|||..+.|+
T Consensus 37 rG~~fV~f~~~~dA~~A~~~l~g~~~~gr 65 (70)
T smart00361 37 RGNVYITFERSEDAARAIVDLNGRYFDGR 65 (70)
T ss_pred cEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 57999999999999999999999999994
No 126
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.59 E-value=2.6e-07 Score=65.46 Aligned_cols=70 Identities=26% Similarity=0.402 Sum_probs=49.8
Q ss_pred CEEEeCCCCCCCCHHH----HHHHhhccC-CEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 019418 7 RTLYVGNLPGDTRMRE----VEDLFYKYG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (341)
Q Consensus 7 ~~l~V~nLp~~~t~~~----l~~~F~~~G-~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~ 81 (341)
..|||.|||.+.+... |.+|+..|| .|..| . .+.|+|.|.+++.|..|++.|+|..+.|.+|.|.+..
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~-----~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S-----GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE---------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e-----CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 4699999999998876 456777786 88776 2 5799999999999999999999999999999999985
Q ss_pred CC
Q 019418 82 GG 83 (341)
Q Consensus 82 ~~ 83 (341)
..
T Consensus 76 ~~ 77 (90)
T PF11608_consen 76 KN 77 (90)
T ss_dssp -S
T ss_pred Cc
Confidence 43
No 127
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=1.9e-07 Score=83.01 Aligned_cols=72 Identities=21% Similarity=0.314 Sum_probs=64.8
Q ss_pred CCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeE
Q 019418 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIF 186 (341)
Q Consensus 107 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~ 186 (341)
.+.+.|||+.|.+-++.++|.-+|+.||.|+.|.|+++.. +|.+.
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~k---------------------tgdsL-------------- 281 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRK---------------------TGDSL-------------- 281 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEeccc---------------------ccchh--------------
Confidence 4567899999999999999999999999999999999987 44442
Q ss_pred EEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCcccccc
Q 019418 187 FIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRN 238 (341)
Q Consensus 187 fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g 238 (341)
.++||+|++.+..++|.=+|++..|+.
T Consensus 282 -------------------------qyaFiEFen~escE~AyFKMdNvLIDD 308 (479)
T KOG0415|consen 282 -------------------------QYAFIEFENKESCEQAYFKMDNVLIDD 308 (479)
T ss_pred -------------------------heeeeeecchhhHHHHHhhhcceeecc
Confidence 489999999999999999999999888
No 128
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.44 E-value=5e-08 Score=87.66 Aligned_cols=63 Identities=17% Similarity=0.169 Sum_probs=53.4
Q ss_pred CEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeC
Q 019418 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD 71 (341)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~ 71 (341)
++|+|.+|+..+-..++.+.|..+|+|...++.. +-...+|.|+|....+...|+. ++|..+.
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as-k~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTAS-KSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc-cCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 6899999999999999999999999998776643 3345688899999999999998 5776665
No 129
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.29 E-value=1.3e-05 Score=72.37 Aligned_cols=124 Identities=17% Similarity=0.171 Sum_probs=85.1
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEe---EEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIV---DIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~---~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~ 80 (341)
.++..|-..+||+..++.+|..+|.-.--.. -+-+...+.-.|.|.|.|.++|.-+.|++. +.+.+.++.|.|-.+
T Consensus 58 ~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryievYka 136 (508)
T KOG1365|consen 58 DDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIEVYKA 136 (508)
T ss_pred CcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhccCCceeeecc
Confidence 3556677899999999999999997542111 112233566678999999999999999984 888889999999877
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeeeCCCCCCCHHHHHHHHHH
Q 019418 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRR 132 (341)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~ 132 (341)
....--.. .++.+.......+......|.+.+||+++++.++.++|.+
T Consensus 137 ~ge~f~~i----agg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~ 184 (508)
T KOG1365|consen 137 TGEEFLKI----AGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGP 184 (508)
T ss_pred CchhheEe----cCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCC
Confidence 54321110 0111111112233344566788999999999999999963
No 130
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.24 E-value=3.2e-06 Score=70.20 Aligned_cols=79 Identities=15% Similarity=0.169 Sum_probs=66.3
Q ss_pred CCCCCcceeeeeCCCCCCCHHHHHHHHHHh-CCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCcccccc
Q 019418 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRA-GDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYR 182 (341)
Q Consensus 104 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~-G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~ 182 (341)
+......-++|..+|...-+.++..+|.++ |.+..+++.+... ||.+
T Consensus 44 p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkr---------------------TGNS----------- 91 (214)
T KOG4208|consen 44 PEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKR---------------------TGNS----------- 91 (214)
T ss_pred CccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccc---------------------cCCc-----------
Confidence 334444678999999999999999999999 5788888877766 5555
Q ss_pred ceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCcccccccccc
Q 019418 183 FRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 242 (341)
Q Consensus 183 ~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~ 242 (341)
++||||+|++.+.|.-|.+.||+..+.++...
T Consensus 92 ----------------------------KgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 92 ----------------------------KGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred ----------------------------CceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 77999999999999999999999999997733
No 131
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.23 E-value=7.6e-07 Score=75.57 Aligned_cols=70 Identities=31% Similarity=0.519 Sum_probs=64.1
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEE
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRV 77 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v 77 (341)
+...+.|+|.||+..+.+.+|.+.|.++|++....+. .+++||+|.++++|..|+..|+|..+.++.|.+
T Consensus 96 ~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~-----~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 96 SRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR-----RNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred ccccceeeeccchhhhhHHHHhhhhcccCCCchhhhh-----ccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 3567899999999999999999999999999665553 789999999999999999999999999999999
No 132
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.21 E-value=1.5e-06 Score=74.12 Aligned_cols=157 Identities=16% Similarity=0.186 Sum_probs=111.8
Q ss_pred EEeCCCCCCCCHHH-H--HHHhhccCCEeEEEeec--CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccCC
Q 019418 9 LYVGNLPGDTRMRE-V--EDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (341)
Q Consensus 9 l~V~nLp~~~t~~~-l--~~~F~~~G~I~~i~i~~--~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~ 83 (341)
++++|+-..+..+- | ...|+.+-.+....+.. .+.-.+++|+.|.....-.++-..-++..+.-.++++.-...-
T Consensus 99 p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtsw 178 (290)
T KOG0226|consen 99 PFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSW 178 (290)
T ss_pred ccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeecccccc
Confidence 45566655555554 2 55666665544444433 3455789999998877777776655666666665554433221
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchh
Q 019418 84 RRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWG 163 (341)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~ 163 (341)
... ........+.+||-+.|..+++.+-|-..|.+|-......+.++..
T Consensus 179 edP--------------sl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkR----------------- 227 (290)
T KOG0226|consen 179 EDP--------------SLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKR----------------- 227 (290)
T ss_pred CCc--------------ccccCccccceeecccccccccHHHHHHHHHhccchhhcccccccc-----------------
Confidence 111 1112334568999999999999999999999998888888888876
Q ss_pred hhHhhhhccCCCCccccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccc
Q 019418 164 EIREAGRILGGGMFSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 239 (341)
Q Consensus 164 ~~~~ag~~~g~~~~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~ 239 (341)
||++ +|+|||.|.+.+++..|+.+|||+.++.+
T Consensus 228 ----TgKS---------------------------------------kgygfVSf~~pad~~rAmrem~gkyVgsr 260 (290)
T KOG0226|consen 228 ----TGKS---------------------------------------KGYGFVSFRDPADYVRAMREMNGKYVGSR 260 (290)
T ss_pred ----cccc---------------------------------------ccceeeeecCHHHHHHHHHhhcccccccc
Confidence 5666 67999999999999999999999999884
No 133
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.21 E-value=3.9e-06 Score=74.72 Aligned_cols=70 Identities=19% Similarity=0.294 Sum_probs=60.2
Q ss_pred CCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCcccccc
Q 019418 103 GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYR 182 (341)
Q Consensus 103 ~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~ 182 (341)
++....-.+|||++|-..+++++|+++|.+||+|..+.+.....
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~------------------------------------ 265 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKG------------------------------------ 265 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccc------------------------------------
Confidence 34445567899999999999999999999999999999987654
Q ss_pred ceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhc-Ccccccc
Q 019418 183 FRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKL-DRSEFRN 238 (341)
Q Consensus 183 ~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l-~g~~~~g 238 (341)
+|||+|.+.+.|+.|.+++ |...++|
T Consensus 266 ------------------------------CAFv~ftTR~aAE~Aae~~~n~lvI~G 292 (377)
T KOG0153|consen 266 ------------------------------CAFVTFTTREAAEKAAEKSFNKLVING 292 (377)
T ss_pred ------------------------------cceeeehhhHHHHHHHHhhcceeeecc
Confidence 9999999999999887765 6667788
No 134
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.20 E-value=1.4e-06 Score=72.96 Aligned_cols=65 Identities=23% Similarity=0.370 Sum_probs=53.6
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCcee
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNF 70 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i 70 (341)
.-.||||.||.+++||++|+.+|+.|--...++|... .....|||+|.+.+.|..||..|+|..|
T Consensus 209 acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~-~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 209 ACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR-GGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC-CCcceEeecHHHHHHHHHHHHHhhccee
Confidence 4568999999999999999999999965555555332 2255899999999999999999999766
No 135
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=98.19 E-value=5.3e-06 Score=71.14 Aligned_cols=62 Identities=23% Similarity=0.348 Sum_probs=52.3
Q ss_pred HHHHHHhh-ccCCEeEEEeec--CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccC
Q 019418 21 REVEDLFY-KYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (341)
Q Consensus 21 ~~l~~~F~-~~G~I~~i~i~~--~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~ 82 (341)
++|...|+ +||+|+++.|-. ..+-.|-+||.|..+++|++|++.||+..|.|++|..++...
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 44555555 999999998743 346689999999999999999999999999999999988753
No 136
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.18 E-value=2e-06 Score=73.46 Aligned_cols=76 Identities=18% Similarity=0.353 Sum_probs=66.8
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEe---ecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i---~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~ 80 (341)
+.-+||.|.|.-+++++.|-..|.+|-.-...++ +.+++++||+||.|.++.++..|+..|||..++.++|++...
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 5678999999999999999999999865554444 448999999999999999999999999999999999887654
No 137
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.18 E-value=7.5e-06 Score=69.04 Aligned_cols=74 Identities=15% Similarity=0.178 Sum_probs=63.5
Q ss_pred ceeeeeCCCCCCCHHHHHH----HHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCcccccccee
Q 019418 110 YRVLVTGLPSSASWQDLKD----HMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRI 185 (341)
Q Consensus 110 ~~l~V~nlp~~~~~~~l~~----~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~ 185 (341)
.+|||.||...+..++|+. +|++||.|.++.......
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~K--------------------------------------- 50 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPK--------------------------------------- 50 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCC---------------------------------------
Confidence 4999999999999999888 999999999998876544
Q ss_pred EEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeec
Q 019418 186 FFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 250 (341)
Q Consensus 186 ~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~ 250 (341)
-+|.|||.|.+.+.|..|+..|+|-.+-| .++++...
T Consensus 51 ------------------------mRGQA~VvFk~~~~As~A~r~l~gfpFyg----K~mriqyA 87 (221)
T KOG4206|consen 51 ------------------------MRGQAFVVFKETEAASAALRALQGFPFYG----KPMRIQYA 87 (221)
T ss_pred ------------------------ccCceEEEecChhHHHHHHHHhcCCcccC----chhheecc
Confidence 15789999999999999999999999999 45555444
No 138
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.14 E-value=1.1e-05 Score=70.18 Aligned_cols=71 Identities=28% Similarity=0.336 Sum_probs=63.5
Q ss_pred cceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEEE
Q 019418 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFI 188 (341)
Q Consensus 109 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi 188 (341)
..+|+|.|||..+..+||+++|.+||++..+.+..++. |.+.
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~----------------------G~s~---------------- 124 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRA----------------------GRSL---------------- 124 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCC----------------------CCCC----------------
Confidence 37899999999999999999999999988888888776 5553
Q ss_pred EeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCcccccccc
Q 019418 189 YFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 240 (341)
Q Consensus 189 ~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~ 240 (341)
+.|-|.|...+||..|+++++|..++|..
T Consensus 125 -----------------------Gta~v~~~r~~DA~~avk~~~gv~ldG~~ 153 (243)
T KOG0533|consen 125 -----------------------GTADVSFNRRDDAERAVKKYNGVALDGRP 153 (243)
T ss_pred -----------------------ccceeeecchHhHHHHHHHhcCcccCCce
Confidence 48999999999999999999999999954
No 139
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.12 E-value=1.3e-05 Score=77.35 Aligned_cols=140 Identities=12% Similarity=0.030 Sum_probs=96.0
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~ 81 (341)
+.+.+-+.+.+++....++.++|... .|..+.|.+ .+...|-++|+|....++++|++ -|...+-.+.+.|..+-
T Consensus 310 d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 310 DKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDDVNRPFQTGPPG 387 (944)
T ss_pred hhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhhhhcceeecCCC
Confidence 45667778999999999999998654 355555533 23337899999999999999988 47777888888887653
Q ss_pred CCCCCC--------------CCCCCCCCCC-----CCCCCCCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeE-EEE
Q 019418 82 GGRRHS--------------SSMDRYSSYS-----SGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF-SQV 141 (341)
Q Consensus 82 ~~~~~~--------------~~~~~~~~~~-----~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~-~~i 141 (341)
...-.. ..+.+..... .+...+.+.....+|||..||..++..++.++|...-.|++ +.|
T Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~l 467 (944)
T KOG4307|consen 388 NLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIEL 467 (944)
T ss_pred ccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEe
Confidence 221000 0011110000 11122345566789999999999999999999998887777 555
Q ss_pred eeCCc
Q 019418 142 FRDRG 146 (341)
Q Consensus 142 ~~~~~ 146 (341)
...+.
T Consensus 468 t~~P~ 472 (944)
T KOG4307|consen 468 TRLPT 472 (944)
T ss_pred ccCCc
Confidence 44443
No 140
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.09 E-value=6.2e-06 Score=80.49 Aligned_cols=66 Identities=18% Similarity=0.279 Sum_probs=60.0
Q ss_pred cceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEEE
Q 019418 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFI 188 (341)
Q Consensus 109 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi 188 (341)
.+||||++|+..++++||..+|+.||+|..+.+....
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R------------------------------------------- 457 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR------------------------------------------- 457 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC-------------------------------------------
Confidence 3689999999999999999999999999999887654
Q ss_pred EeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCcccccccc
Q 019418 189 YFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 240 (341)
Q Consensus 189 ~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~ 240 (341)
++|||++....+|.+|+.+|++..+.+..
T Consensus 458 -----------------------~cAfI~M~~RqdA~kalqkl~n~kv~~k~ 486 (894)
T KOG0132|consen 458 -----------------------GCAFIKMVRRQDAEKALQKLSNVKVADKT 486 (894)
T ss_pred -----------------------ceeEEEEeehhHHHHHHHHHhccccccee
Confidence 49999999999999999999988888743
No 141
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.08 E-value=3e-06 Score=76.03 Aligned_cols=80 Identities=29% Similarity=0.403 Sum_probs=70.4
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeE--------EEe---ecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCe
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVD--------IDL---KIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY 73 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~--------i~i---~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~ 73 (341)
..-+|||-+||..+++++|.++|.+||.|.. |+| +.|+.+++-|.|.|.+...|+.||..+++..+.+.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 4568999999999999999999999998753 333 33788999999999999999999999999999999
Q ss_pred EEEEEEccCCC
Q 019418 74 RLRVELAHGGR 84 (341)
Q Consensus 74 ~l~v~~~~~~~ 84 (341)
+|+|.+|....
T Consensus 145 ~ikvs~a~~r~ 155 (351)
T KOG1995|consen 145 TIKVSLAERRT 155 (351)
T ss_pred Cchhhhhhhcc
Confidence 99998886543
No 142
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.05 E-value=2.3e-05 Score=69.87 Aligned_cols=79 Identities=23% Similarity=0.410 Sum_probs=66.2
Q ss_pred CCCCEEEeCCCC----CCCC-------HHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCC
Q 019418 4 RSSRTLYVGNLP----GDTR-------MREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG 72 (341)
Q Consensus 4 ~~~~~l~V~nLp----~~~t-------~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g 72 (341)
+..++|.|.||= ...+ +++|.+-+.+||.|..|.|. +.++.|.+-|.|.+.++|..||+.|+|..|+|
T Consensus 263 r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~-d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdg 341 (382)
T KOG1548|consen 263 RADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVY-DRHPDGVVTVSFRNNEEADQCIQTMDGRWFDG 341 (382)
T ss_pred cCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEe-ccCCCceeEEEeCChHHHHHHHHHhcCeeecc
Confidence 467899999983 2334 34566678999999999774 56789999999999999999999999999999
Q ss_pred eEEEEEEccCC
Q 019418 73 YRLRVELAHGG 83 (341)
Q Consensus 73 ~~l~v~~~~~~ 83 (341)
+.|........
T Consensus 342 Rql~A~i~DG~ 352 (382)
T KOG1548|consen 342 RQLTASIWDGK 352 (382)
T ss_pred eEEEEEEeCCc
Confidence 99999887654
No 143
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.02 E-value=7.5e-06 Score=72.57 Aligned_cols=77 Identities=23% Similarity=0.372 Sum_probs=62.4
Q ss_pred CCEEEeCCCCCCCCHHHH------HHHhhccCCEeEEEeec-C---CCCCc-E-EEEEEcCHHHHHHHHHhcCCceeCCe
Q 019418 6 SRTLYVGNLPGDTRMREV------EDLFYKYGPIVDIDLKI-P---PRPPG-Y-AFLEFEDYRDAEDAIRGRDGYNFDGY 73 (341)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l------~~~F~~~G~I~~i~i~~-~---~~~~g-~-afV~F~~~e~A~~Ai~~lng~~i~g~ 73 (341)
..-+||-+||+.+-.|++ .++|.+||.|..|.|.. + ....+ + .||+|.+.|+|..||+..+|..++|+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 356899999999887773 57899999999998843 2 11122 2 39999999999999999999999999
Q ss_pred EEEEEEccC
Q 019418 74 RLRVELAHG 82 (341)
Q Consensus 74 ~l~v~~~~~ 82 (341)
.|+..+...
T Consensus 194 ~lkatYGTT 202 (480)
T COG5175 194 VLKATYGTT 202 (480)
T ss_pred eEeeecCch
Confidence 999988653
No 144
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.00 E-value=1.4e-05 Score=60.73 Aligned_cols=69 Identities=16% Similarity=0.299 Sum_probs=43.0
Q ss_pred CEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCc-----eeCCeEEEEE
Q 019418 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY-----NFDGYRLRVE 78 (341)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~-----~i~g~~l~v~ 78 (341)
+.|+|.|++..++.++|.++|++||+|..|.+.. .-.-|||-|.+++.|+.|++.+.-. .|.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~---G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR---GDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--T---T-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecC---CCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 5789999999999999999999999999998864 2348999999999999999876543 3444444443
No 145
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=97.99 E-value=1.8e-05 Score=74.66 Aligned_cols=78 Identities=23% Similarity=0.313 Sum_probs=65.7
Q ss_pred cceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEEE
Q 019418 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFI 188 (341)
Q Consensus 109 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi 188 (341)
..+|+|.+|...+..-+|+.+|.+||.|+-+.++.+...+
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsP---------------------------------------- 444 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSP---------------------------------------- 444 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCC----------------------------------------
Confidence 4689999999999999999999999999999988765400
Q ss_pred EeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeec
Q 019418 189 YFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 250 (341)
Q Consensus 189 ~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~ 250 (341)
..+-||||++.+.++|.++|+.|+.++|+| .-|.|...
T Consensus 445 --------------------GaRCYGfVTMSts~eAtkCI~hLHrTELHG----rmISVEka 482 (940)
T KOG4661|consen 445 --------------------GARCYGFVTMSTSAEATKCIEHLHRTELHG----RMISVEKA 482 (940)
T ss_pred --------------------CcceeEEEEecchHHHHHHHHHhhhhhhcc----eeeeeeec
Confidence 113489999999999999999999999999 55666543
No 146
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.99 E-value=4.9e-06 Score=74.76 Aligned_cols=82 Identities=22% Similarity=0.364 Sum_probs=72.7
Q ss_pred CCCCCEEE-eCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEE
Q 019418 3 SRSSRTLY-VGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (341)
Q Consensus 3 ~~~~~~l~-V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~ 78 (341)
..++.++| |+||+.++++++|..+|..+|.|..+++.. ++..+|||||.|.+..++..|+.. +...+.++++.+.
T Consensus 181 ~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 259 (285)
T KOG4210|consen 181 SGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLE 259 (285)
T ss_pred cCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccc
Confidence 34566777 999999999999999999999999999965 688899999999999999999987 8889999999999
Q ss_pred EccCCCC
Q 019418 79 LAHGGRR 85 (341)
Q Consensus 79 ~~~~~~~ 85 (341)
...+...
T Consensus 260 ~~~~~~~ 266 (285)
T KOG4210|consen 260 EDEPRPK 266 (285)
T ss_pred cCCCCcc
Confidence 9876543
No 147
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.92 E-value=2.9e-05 Score=51.23 Aligned_cols=53 Identities=32% Similarity=0.548 Sum_probs=43.5
Q ss_pred CCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHH
Q 019418 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAI 62 (341)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai 62 (341)
++.|-|.+.++...+ +|...|..||+|..+.+. ....+.||.|.+..+|++||
T Consensus 1 ~~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~---~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLAE-EVLEHFASFGEIVDIYVP---ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHHH-HHHHHHHhcCCEEEEEcC---CCCcEEEEEECCHHHHHhhC
Confidence 367889999987664 455588899999999886 23679999999999999995
No 148
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.84 E-value=0.00011 Score=69.05 Aligned_cols=79 Identities=18% Similarity=0.244 Sum_probs=61.1
Q ss_pred cceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEEE
Q 019418 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFI 188 (341)
Q Consensus 109 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi 188 (341)
..+|||.|||.+++..+|+++|++||.|....|..... .+
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~---------------------~~------------------- 327 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSP---------------------GG------------------- 327 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEecc---------------------CC-------------------
Confidence 35699999999999999999999999999888876432 00
Q ss_pred EeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccC
Q 019418 189 YFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 252 (341)
Q Consensus 189 ~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~ 252 (341)
....+|||+|.+.+.++.||.+- -..+++ ..+.|.++..
T Consensus 328 --------------------~~~~fgFV~f~~~~~~~~~i~As-p~~ig~----~kl~Veek~~ 366 (419)
T KOG0116|consen 328 --------------------KNPCFGFVEFENAAAVQNAIEAS-PLEIGG----RKLNVEEKRP 366 (419)
T ss_pred --------------------CcCceEEEEEeecchhhhhhhcC-ccccCC----eeEEEEeccc
Confidence 01259999999999999999876 555666 4566666544
No 149
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.80 E-value=1.7e-05 Score=66.45 Aligned_cols=73 Identities=15% Similarity=0.082 Sum_probs=63.4
Q ss_pred CCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCcccccccee
Q 019418 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRI 185 (341)
Q Consensus 106 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~ 185 (341)
...+.+|||+|+...++++-|.++|-+.|.|..|.|..+.. +
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d----------------------~---------------- 47 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD----------------------Q---------------- 47 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc----------------------C----------------
Confidence 34558999999999999999999999999999999988766 1
Q ss_pred EEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCcccccccc
Q 019418 186 FFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 240 (341)
Q Consensus 186 ~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~ 240 (341)
+ ..|+||.|.++-...-|+..|||..+-+.+
T Consensus 48 -----------------------~-~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e 78 (267)
T KOG4454|consen 48 -----------------------E-QKFAYVFFPNENSVQLAGQLENGDDLEEDE 78 (267)
T ss_pred -----------------------C-Cceeeeecccccchhhhhhhcccchhccch
Confidence 1 238999999999999999999999887765
No 150
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.78 E-value=3.9e-05 Score=58.34 Aligned_cols=59 Identities=22% Similarity=0.405 Sum_probs=40.4
Q ss_pred ceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEEEE
Q 019418 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFIY 189 (341)
Q Consensus 110 ~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi~ 189 (341)
..|.|.+++..++.++|+++|.+||.|.+|++.....
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------------------------------------------- 38 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------------------------------------------- 38 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S-------------------------------------------
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC-------------------------------------------
Confidence 4688999999999999999999999999999987655
Q ss_pred eecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCcc
Q 019418 190 FKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRS 234 (341)
Q Consensus 190 ~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~ 234 (341)
.|+|-|.+.+.|+.|+.++...
T Consensus 39 -----------------------~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 39 -----------------------EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -----------------------EEEEEESS---HHHHHHHHHHT
T ss_pred -----------------------EEEEEECCcchHHHHHHHHHhc
Confidence 8999999999999999988654
No 151
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.78 E-value=3.1e-05 Score=73.23 Aligned_cols=70 Identities=19% Similarity=0.195 Sum_probs=60.9
Q ss_pred CCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCcccccccee
Q 019418 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRI 185 (341)
Q Consensus 106 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~ 185 (341)
..+..+|+|-|||..++.++|..+|..||+|..++.-....
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~--------------------------------------- 112 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKR--------------------------------------- 112 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccC---------------------------------------
Confidence 44557899999999999999999999999999866544433
Q ss_pred EEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCcccccccc
Q 019418 186 FFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 240 (341)
Q Consensus 186 ~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~ 240 (341)
+..||+|-+..+|+.|+++|++.++.|+.
T Consensus 113 --------------------------~~~~v~FyDvR~A~~Alk~l~~~~~~~~~ 141 (549)
T KOG4660|consen 113 --------------------------GIVFVEFYDVRDAERALKALNRREIAGKR 141 (549)
T ss_pred --------------------------ceEEEEEeehHhHHHHHHHHHHHHhhhhh
Confidence 67899999999999999999999999854
No 152
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.72 E-value=2.5e-05 Score=66.96 Aligned_cols=70 Identities=16% Similarity=0.244 Sum_probs=59.7
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---C--------CCCCc----EEEEEEcCHHHHHHHHHhcCCce
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---P--------PRPPG----YAFLEFEDYRDAEDAIRGRDGYN 69 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~--------~~~~g----~afV~F~~~e~A~~Ai~~lng~~ 69 (341)
..-.||++|||+.+....|+++|++||+|-.|.|.. . +.+.+ -|+|+|.+...|..+...|||..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 346899999999999999999999999999999943 1 22222 27899999999999999999999
Q ss_pred eCCeE
Q 019418 70 FDGYR 74 (341)
Q Consensus 70 i~g~~ 74 (341)
|.|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99876
No 153
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.70 E-value=2.4e-05 Score=69.71 Aligned_cols=75 Identities=19% Similarity=0.167 Sum_probs=64.7
Q ss_pred CCEEEeCCCCCCCCHHHHHHHhhccC--CEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 019418 6 SRTLYVGNLPGDTRMREVEDLFYKYG--PIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (341)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G--~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~ 80 (341)
.-++|||||-+.+|++||.+.+...| .|.+|++.. +|+++|||+|...+..+.++.++.|....|.|+.-.|...
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 45799999999999999999998877 555666633 7899999999999999999999999999999988777654
No 154
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.69 E-value=0.00013 Score=69.12 Aligned_cols=77 Identities=27% Similarity=0.443 Sum_probs=62.2
Q ss_pred CCCEEEeCCCCCCC--CH----HHHHHHhhccCCEeEEEeec--CCCCCcEEEEEEcCHHHHHHHHHhcCCceeC-CeEE
Q 019418 5 SSRTLYVGNLPGDT--RM----REVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD-GYRL 75 (341)
Q Consensus 5 ~~~~l~V~nLp~~~--t~----~~l~~~F~~~G~I~~i~i~~--~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~-g~~l 75 (341)
-...|+|.|+|--- .. .-|..+|+++|+|..+.++. .|..+||.|++|++..+|+.|++.|||..|+ .+.+
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 35689999998532 12 23567899999999999975 5678999999999999999999999999886 6677
Q ss_pred EEEEcc
Q 019418 76 RVELAH 81 (341)
Q Consensus 76 ~v~~~~ 81 (341)
.|...+
T Consensus 137 ~v~~f~ 142 (698)
T KOG2314|consen 137 FVRLFK 142 (698)
T ss_pred Eeehhh
Confidence 776554
No 155
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.63 E-value=0.00029 Score=52.82 Aligned_cols=75 Identities=19% Similarity=0.274 Sum_probs=54.4
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEee----------cCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeE
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK----------IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYR 74 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~----------~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~ 74 (341)
..+-|.|=+.|+. ....|.+.|++||+|.+..-. ......++..|.|.++.+|.+||. .||..|.|..
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 5677899999988 667888899999999888511 012346789999999999999999 5999999865
Q ss_pred E-EEEEcc
Q 019418 75 L-RVELAH 81 (341)
Q Consensus 75 l-~v~~~~ 81 (341)
| -|.+++
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 5 466664
No 156
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.63 E-value=3.5e-05 Score=70.59 Aligned_cols=67 Identities=25% Similarity=0.310 Sum_probs=57.1
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecC--------C--------CCCcEEEEEEcCHHHHHHHHHhcCC
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP--------P--------RPPGYAFLEFEDYRDAEDAIRGRDG 67 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~--------~--------~~~g~afV~F~~~e~A~~Ai~~lng 67 (341)
-++++|.+-|||.+-.-+.|.+||+.||.|..|.|... + ..+-+|||+|...+.|.+|.+.||.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 47899999999999999999999999999999999442 1 1256899999999999999998765
Q ss_pred cee
Q 019418 68 YNF 70 (341)
Q Consensus 68 ~~i 70 (341)
..-
T Consensus 309 e~~ 311 (484)
T KOG1855|consen 309 EQN 311 (484)
T ss_pred hhh
Confidence 433
No 157
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.57 E-value=0.00013 Score=70.83 Aligned_cols=77 Identities=17% Similarity=0.122 Sum_probs=64.3
Q ss_pred CCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeE
Q 019418 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIF 186 (341)
Q Consensus 107 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~ 186 (341)
...+.|||+||++.++++.|...|..||.|..+.|...+.+. +.
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEe--------------Ek---------------------- 215 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEE--------------EK---------------------- 215 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchh--------------hh----------------------
Confidence 445789999999999999999999999999999998876600 11
Q ss_pred EEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCcccccccc
Q 019418 187 FIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 240 (341)
Q Consensus 187 fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~ 240 (341)
-...++|||-|-+..||+.|++.|+|..+.+.+
T Consensus 216 ---------------------~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e 248 (877)
T KOG0151|consen 216 ---------------------RRERNCGFVAFMNRADAERALKELQGIIVMEYE 248 (877)
T ss_pred ---------------------ccccccceeeehhhhhHHHHHHHhcceeeeeee
Confidence 111569999999999999999999999988744
No 158
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.53 E-value=0.0003 Score=68.30 Aligned_cols=76 Identities=21% Similarity=0.374 Sum_probs=64.7
Q ss_pred CCCC-EEEeCCCCCCCCHHHHHHHhhccCCEe-EEEee--cCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q 019418 4 RSSR-TLYVGNLPGDTRMREVEDLFYKYGPIV-DIDLK--IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (341)
Q Consensus 4 ~~~~-~l~V~nLp~~~t~~~l~~~F~~~G~I~-~i~i~--~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~ 79 (341)
.+.+ .|-+.|+|++++-+||.++|..|-.+- +|.+. .+|...|-|.|.|++.++|..|...|+++.|..+.+.+..
T Consensus 864 ~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 864 SPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CCCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 4555 788999999999999999999996443 34443 3788999999999999999999999999999999988754
No 159
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.46 E-value=0.00084 Score=47.87 Aligned_cols=35 Identities=11% Similarity=0.154 Sum_probs=26.3
Q ss_pred ceEEEEecChhhHHHHHHhcCccccccccccceEEEeec
Q 019418 212 MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 250 (341)
Q Consensus 212 ~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~ 250 (341)
+.|+|.|.+.+.|..|.+.|+|..+-| ..|.+...
T Consensus 40 ~tAilrF~~~~~A~RA~KRmegEdVfG----~kI~v~~~ 74 (90)
T PF11608_consen 40 GTAILRFPNQEFAERAQKRMEGEDVFG----NKISVSFS 74 (90)
T ss_dssp T-EEEEESSHHHHHHHHHHHTT--SSS----S--EEESS
T ss_pred CEEEEEeCCHHHHHHHHHhhccccccc----ceEEEEEc
Confidence 479999999999999999999999999 45665544
No 160
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.41 E-value=0.00076 Score=53.64 Aligned_cols=55 Identities=25% Similarity=0.430 Sum_probs=46.7
Q ss_pred HHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccC
Q 019418 22 EVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (341)
Q Consensus 22 ~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~ 82 (341)
+|.+.|..||+|.-|++. -+.-+|+|.+-++|-+|+. |+|..++|+.|+|....+
T Consensus 52 ~ll~~~~~~GevvLvRfv-----~~~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFV-----GDTMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHCCS-ECEEEEE-----TTCEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE---
T ss_pred HHHHHHHhCCceEEEEEe-----CCeEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCc
Confidence 678889999999988887 4678999999999999998 899999999999998764
No 161
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.40 E-value=0.00013 Score=69.42 Aligned_cols=76 Identities=11% Similarity=0.217 Sum_probs=65.2
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhh-ccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCcee---CCeEEEEEE
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFY-KYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNF---DGYRLRVEL 79 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i---~g~~l~v~~ 79 (341)
..+..|||.||-.-+|..+|++|+. .+|.|++.+|- +-+..|||.|.+.++|.+.+.+|||..+ +++.|.+.|
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmD---kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf 518 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMD---KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADF 518 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHHH---HhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeee
Confidence 4688999999999999999999998 67788888662 2267899999999999999999999876 578899988
Q ss_pred ccC
Q 019418 80 AHG 82 (341)
Q Consensus 80 ~~~ 82 (341)
...
T Consensus 519 ~~~ 521 (718)
T KOG2416|consen 519 VRA 521 (718)
T ss_pred cch
Confidence 753
No 162
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.39 E-value=0.0019 Score=48.16 Aligned_cols=72 Identities=17% Similarity=0.121 Sum_probs=56.1
Q ss_pred ceeeeeCCCCCCCHHHHHHHHHHh--CCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEE
Q 019418 110 YRVLVTGLPSSASWQDLKDHMRRA--GDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFF 187 (341)
Q Consensus 110 ~~l~V~nlp~~~~~~~l~~~f~~~--G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~f 187 (341)
++|.|.|||...+.++|.+++... |....+.++.|-.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~----------------------------------------- 40 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFK----------------------------------------- 40 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeecc-----------------------------------------
Confidence 589999999999999999998765 3445555554433
Q ss_pred EEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccc
Q 019418 188 IYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 241 (341)
Q Consensus 188 i~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~ 241 (341)
+.-+.|+|||-|.+++.|.+-.+.++|..+..-.+
T Consensus 41 -------------------~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s 75 (97)
T PF04059_consen 41 -------------------NKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNS 75 (97)
T ss_pred -------------------CCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCC
Confidence 11236799999999999999999999999876443
No 163
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.34 E-value=0.00032 Score=69.63 Aligned_cols=78 Identities=18% Similarity=0.221 Sum_probs=69.6
Q ss_pred CEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec--CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccCCC
Q 019418 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 84 (341)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~--~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~~ 84 (341)
..|+|.|+|+..|.++|..+|..+|.++++.++. .|+++|-|||.|.++.+|..++...++..+.-..+.|...++..
T Consensus 737 ~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~~ 816 (881)
T KOG0128|consen 737 ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNPER 816 (881)
T ss_pred hhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCCcc
Confidence 4689999999999999999999999999988744 78999999999999999999999999988888888888765533
No 164
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.31 E-value=0.00064 Score=58.52 Aligned_cols=96 Identities=28% Similarity=0.273 Sum_probs=78.7
Q ss_pred HHHHHHHhcCCceeCCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCe
Q 019418 57 DAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDV 136 (341)
Q Consensus 57 ~A~~Ai~~lng~~i~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i 136 (341)
-|+.|...|++....|+.|.|.++.. ..|+|.||+.-++.+.|...|..||+|
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~---------------------------a~l~V~nl~~~~sndll~~~f~~fg~~ 58 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH---------------------------AELYVVNLMQGASNDLLEQAFRRFGPI 58 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc---------------------------ceEEEEecchhhhhHHHHHhhhhcCcc
Confidence 35666667999999999999999975 379999999999999999999999999
Q ss_pred eEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEEEEeecchhhHHhhhcccccccCCCceEEE
Q 019418 137 CFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIV 216 (341)
Q Consensus 137 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV 216 (341)
....++.|.. ++. .+.++|
T Consensus 59 e~av~~vD~r----------------------~k~---------------------------------------t~eg~v 77 (275)
T KOG0115|consen 59 ERAVAKVDDR----------------------GKP---------------------------------------TREGIV 77 (275)
T ss_pred chheeeeccc----------------------ccc---------------------------------------cccchh
Confidence 8877776654 222 347899
Q ss_pred EecChhhHHHHHHhcCcccccccc
Q 019418 217 DYTSYDDMKYAIRKLDRSEFRNAF 240 (341)
Q Consensus 217 ~f~~~~~a~~Ai~~l~g~~~~g~~ 240 (341)
.|...-.|.+|...+.-.-+.+..
T Consensus 78 ~~~~k~~a~~a~rr~~~~g~~~~~ 101 (275)
T KOG0115|consen 78 EFAKKPNARKAARRCREGGFGGTT 101 (275)
T ss_pred hhhcchhHHHHHHHhccCccccCC
Confidence 999999999999888666555544
No 165
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.15 E-value=0.002 Score=60.80 Aligned_cols=62 Identities=21% Similarity=0.374 Sum_probs=55.8
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhh-ccCCEeEEEeecC---CCCCcEEEEEEcCHHHHHHHHHh
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFY-KYGPIVDIDLKIP---PRPPGYAFLEFEDYRDAEDAIRG 64 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~I~~i~i~~~---~~~~g~afV~F~~~e~A~~Ai~~ 64 (341)
-++.+|||||+||.-+|-++|..+|+ .||-|..+-|-.+ +-++|-|=|+|.+..+-.+||.+
T Consensus 367 lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 367 IDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 36889999999999999999999998 8999999888554 56799999999999999999974
No 166
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.12 E-value=0.0014 Score=57.52 Aligned_cols=62 Identities=21% Similarity=0.252 Sum_probs=51.1
Q ss_pred HHHHHHHhhccCCEeEEEeecC-CC---CCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 019418 20 MREVEDLFYKYGPIVDIDLKIP-PR---PPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (341)
Q Consensus 20 ~~~l~~~F~~~G~I~~i~i~~~-~~---~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~ 81 (341)
++++.+.+++||+|..|.|... +. ----.||+|...++|.+|+-.|||..|+|+.+...+.+
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 4567889999999999988542 11 12347999999999999999999999999999887765
No 167
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.12 E-value=0.0012 Score=43.53 Aligned_cols=36 Identities=17% Similarity=0.333 Sum_probs=27.1
Q ss_pred ceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCc
Q 019418 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG 146 (341)
Q Consensus 110 ~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~ 146 (341)
..|-|.+.|++.. +.+...|.+||+|+...+....+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~~~ 37 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPESTN 37 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCCCc
Confidence 4678888887765 44566999999999988874433
No 168
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.12 E-value=0.00056 Score=58.83 Aligned_cols=83 Identities=18% Similarity=0.191 Sum_probs=62.3
Q ss_pred ceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEEEE
Q 019418 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFIY 189 (341)
Q Consensus 110 ~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi~ 189 (341)
..||+.+||+.+...-|+++|.+||+|-.|.+..... ...+.+..+|+.....
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~------------------s~~~~r~~~~~n~~~~--------- 127 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDD------------------SKRAARKRKGGNYKKL--------- 127 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhh------------------HHHHHHhhcCCCcccc---------
Confidence 5799999999999999999999999999998877654 0001111111111111
Q ss_pred eecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCcccccccc
Q 019418 190 FKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 240 (341)
Q Consensus 190 ~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~ 240 (341)
-..|.|+|.+...|..+.+.||++.|.|..
T Consensus 128 ---------------------y~EGWvEF~~KrvAK~iAe~Lnn~~Iggkk 157 (278)
T KOG3152|consen 128 ---------------------YSEGWVEFISKRVAKRIAELLNNTPIGGKK 157 (278)
T ss_pred ---------------------chhHHHHHHHHHHHHHHHHHhCCCccCCCC
Confidence 136899999999999999999999999965
No 169
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.08 E-value=0.0012 Score=57.55 Aligned_cols=73 Identities=21% Similarity=0.241 Sum_probs=63.5
Q ss_pred CCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeE
Q 019418 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIF 186 (341)
Q Consensus 107 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~ 186 (341)
.....+||+|+...++.+++...|+.||.|..+.|+.+.. .|.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~---------------------~~~---------------- 141 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKF---------------------RGH---------------- 141 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeecccc---------------------CCC----------------
Confidence 3446899999999999999999999999999999988866 111
Q ss_pred EEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCcccccccc
Q 019418 187 FIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 240 (341)
Q Consensus 187 fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~ 240 (341)
.++++||+|.+.+.+..|+. |||..+.|..
T Consensus 142 -----------------------~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~ 171 (231)
T KOG4209|consen 142 -----------------------PKGFAYVEFSSYELVEEAYK-LDGSEIPGPA 171 (231)
T ss_pred -----------------------cceeEEEecccHhhhHHHhh-cCCccccccc
Confidence 26799999999999999998 9999999954
No 170
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.06 E-value=0.0009 Score=66.91 Aligned_cols=80 Identities=28% Similarity=0.407 Sum_probs=70.5
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCC--eEEEEEEcc
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG--YRLRVELAH 81 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g--~~l~v~~~~ 81 (341)
..++.+||++|.+.+....|...|..||.|..|.+-. ...||+|+|.+...|+.|+..|-|..|+| +.|.|.++.
T Consensus 453 t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h---gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~ 529 (975)
T KOG0112|consen 453 TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH---GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLAS 529 (975)
T ss_pred ccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc---CCcceeeecccCccchhhHHHHhcCcCCCCCccccccccc
Confidence 5788999999999999999999999999999988853 35699999999999999999999999985 679999987
Q ss_pred CCCCC
Q 019418 82 GGRRH 86 (341)
Q Consensus 82 ~~~~~ 86 (341)
.....
T Consensus 530 ~~~~~ 534 (975)
T KOG0112|consen 530 PPGAT 534 (975)
T ss_pred CCCCC
Confidence 65443
No 171
>KOG2548 consensus SWAP mRNA splicing regulator [RNA processing and modification]
Probab=96.98 E-value=0.00017 Score=67.64 Aligned_cols=14 Identities=14% Similarity=0.052 Sum_probs=5.6
Q ss_pred CccccccceeEEEE
Q 019418 176 MFSCLYRFRIFFIY 189 (341)
Q Consensus 176 ~~~~~~~~~~~fi~ 189 (341)
+...+...-+.||+
T Consensus 313 ~~d~~r~eKieyIT 326 (653)
T KOG2548|consen 313 PSDEIRKEKIEYIT 326 (653)
T ss_pred CccccccccceEEe
Confidence 33333333444443
No 172
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.95 E-value=0.0047 Score=44.07 Aligned_cols=54 Identities=15% Similarity=0.267 Sum_probs=41.5
Q ss_pred CEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcC
Q 019418 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRD 66 (341)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~ln 66 (341)
...||+ +|..+...||.++|+.||.|.--+|. -.-|||...+.+.|..|+..+.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~-----dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWIN-----DTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEEEEEEC-----TTEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEEEEEEc-----CCcEEEEeecHHHHHHHHHHhc
Confidence 345666 99999999999999999999555554 3489999999999999998775
No 173
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.93 E-value=0.002 Score=59.41 Aligned_cols=83 Identities=13% Similarity=0.222 Sum_probs=60.8
Q ss_pred CCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccc
Q 019418 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRF 183 (341)
Q Consensus 104 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~ 183 (341)
.+..+..+|.+.|||.+-.-|.|.++|..+|.|..++|....... . ..
T Consensus 226 ~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip-~-----------------d~-------------- 273 (484)
T KOG1855|consen 226 EEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIP-E-----------------DV-------------- 273 (484)
T ss_pred ccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCC-c-----------------cc--------------
Confidence 344566899999999999999999999999999999998773200 0 00
Q ss_pred eeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCc
Q 019418 184 RIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDR 233 (341)
Q Consensus 184 ~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g 233 (341)
.-+...+-.+..+.+++|+|+..+.|.+|.+.|+.
T Consensus 274 ---------------r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 274 ---------------RGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred ---------------ccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 00111222233356899999999999999998854
No 174
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.65 E-value=0.0048 Score=58.84 Aligned_cols=73 Identities=23% Similarity=0.267 Sum_probs=58.4
Q ss_pred CCcceeeeeCCCCCCC--HH----HHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCcccc
Q 019418 107 RSDYRVLVTGLPSSAS--WQ----DLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCL 180 (341)
Q Consensus 107 ~~~~~l~V~nlp~~~~--~~----~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~ 180 (341)
.-+..|+|.|+|.--. .+ -|..+|+++|+|+.+.++.+.. |+.
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~----------------------ggt--------- 104 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE----------------------GGT--------- 104 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc----------------------CCe---------
Confidence 3446899999986432 22 4678899999999999987766 222
Q ss_pred ccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCcccccccc
Q 019418 181 YRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 240 (341)
Q Consensus 181 ~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~ 240 (341)
+|+.|++|.+..+|+.|++.|||+.++-++
T Consensus 105 ------------------------------kG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 105 ------------------------------KGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred ------------------------------eeEEEEEecChhhHHHHHHhcccceecccc
Confidence 579999999999999999999999988754
No 175
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.61 E-value=0.009 Score=53.48 Aligned_cols=80 Identities=14% Similarity=0.158 Sum_probs=58.8
Q ss_pred CCCCCcceeeeeCCCCCCCHHH------HHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCc
Q 019418 104 VSRRSDYRVLVTGLPSSASWQD------LKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMF 177 (341)
Q Consensus 104 ~~~~~~~~l~V~nlp~~~~~~~------l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~ 177 (341)
...-...-+||-+||+.+..++ -.++|.+||.|..+.|.+... +-.+
T Consensus 109 iRVvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~---------------------s~ns------ 161 (480)
T COG5175 109 IRVVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTS---------------------SLNS------ 161 (480)
T ss_pred ceeeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEeccccc---------------------cccc------
Confidence 3334456789999999987776 258999999999988876543 0000
Q ss_pred cccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCcccccccc
Q 019418 178 SCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 240 (341)
Q Consensus 178 ~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~ 240 (341)
..+..-.+|.|.+.+||..||.+++|..++|+.
T Consensus 162 ------------------------------t~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 162 ------------------------------TASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ------------------------------ccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 001113499999999999999999999999954
No 176
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=96.59 E-value=0.00014 Score=70.34 Aligned_cols=120 Identities=18% Similarity=0.112 Sum_probs=82.1
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccCCC
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 84 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~~ 84 (341)
+..++||+||...+..+-+..+...||-|..+.... |+|+.|....-+..|+..|+...++|+.+.+.......
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d~q~~ 112 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVDEQTI 112 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh------hcccchhhHHHHHHHHHHhcccCCCcchhhccchhhhh
Confidence 567999999999999999999999999998876652 99999999999999999999999999998887743221
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcceeeeeCCCCCCCHHHHHHHHHH
Q 019418 85 RHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRR 132 (341)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~ 132 (341)
................. .+......++|.|+|...........+.-
T Consensus 113 ~n~~k~~~~~~~~~~~f--~p~~srr~e~i~~k~~~l~~~~~~~~~~i 158 (668)
T KOG2253|consen 113 ENADKEKSIANKESHKF--VPSSSRRQESIQNKPLSLDEQIHKKSLQI 158 (668)
T ss_pred cCccccccchhhhhccc--CCchhHHHHHhhccccchhHHHHHHHHhc
Confidence 11110000000000000 11112455677777777666665555543
No 177
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.50 E-value=0.0031 Score=52.74 Aligned_cols=80 Identities=18% Similarity=0.170 Sum_probs=50.9
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhc-cCCE---eEEE--eec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCC-
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYK-YGPI---VDID--LKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG- 72 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~I---~~i~--i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g- 72 (341)
+....+|.|.+||+++|++++.+.+.. ++.- ..+. ... ......-|||.|.+.+++...+..++|..|.+
T Consensus 4 ~~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~ 83 (176)
T PF03467_consen 4 EKEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDS 83 (176)
T ss_dssp -----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-T
T ss_pred cccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECC
Confidence 356789999999999999999997776 6655 2332 111 11224569999999999999999999987743
Q ss_pred ----eEEEEEEccC
Q 019418 73 ----YRLRVELAHG 82 (341)
Q Consensus 73 ----~~l~v~~~~~ 82 (341)
....|++|.-
T Consensus 84 kg~~~~~~VE~Apy 97 (176)
T PF03467_consen 84 KGNEYPAVVEFAPY 97 (176)
T ss_dssp TS-EEEEEEEE-SS
T ss_pred CCCCcceeEEEcch
Confidence 3455666654
No 178
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.40 E-value=0.028 Score=43.00 Aligned_cols=67 Identities=16% Similarity=0.116 Sum_probs=50.4
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccC-CEeEEEeecCCCC-CcEEEEEEcCHHHHHHHHHhcCCceeC
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYG-PIVDIDLKIPPRP-PGYAFLEFEDYRDAEDAIRGRDGYNFD 71 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-~I~~i~i~~~~~~-~g~afV~F~~~e~A~~Ai~~lng~~i~ 71 (341)
.+..+.+...|..++-++|..+.+.+- .|..++|..++.+ +-.+++.|.+.++|..-...+||+.+.
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 444555556666666677776666654 6778888877764 446899999999999999999998876
No 179
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.38 E-value=0.02 Score=45.16 Aligned_cols=74 Identities=19% Similarity=0.246 Sum_probs=56.3
Q ss_pred CCCCCEEEeCCCCCCCC----HHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEE
Q 019418 3 SRSSRTLYVGNLPGDTR----MREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t----~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~ 78 (341)
+-+-.||.|.=|..++. -..|...++.||+|.+|.+. .+.-|.|.|.+..+|-+|+.+++. ..-|.-+.+.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c----GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCs 157 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC----GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCS 157 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec----CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEee
Confidence 33566888876665543 33466677899999999875 266899999999999999998776 5667777777
Q ss_pred Ecc
Q 019418 79 LAH 81 (341)
Q Consensus 79 ~~~ 81 (341)
|-.
T Consensus 158 Wqq 160 (166)
T PF15023_consen 158 WQQ 160 (166)
T ss_pred ccc
Confidence 754
No 180
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.08 E-value=0.012 Score=53.20 Aligned_cols=83 Identities=16% Similarity=0.124 Sum_probs=59.4
Q ss_pred CCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCcccccccee
Q 019418 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRI 185 (341)
Q Consensus 106 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~ 185 (341)
.....+|||.+||..+++.+|.++|.++|.|.. +..+.+..|.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikr-----nK~t~kPki~-------------------------------- 105 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKR-----NKRTGKPKIK-------------------------------- 105 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceecc-----CCCCCCcchh--------------------------------
Confidence 445578999999999999999999999986532 2220000000
Q ss_pred EEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCcccccccc
Q 019418 186 FFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 240 (341)
Q Consensus 186 ~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~ 240 (341)
+-+.+.+...++.|.|.|++...|+.||.-++++.+.++.
T Consensus 106 ---------------~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn~ 145 (351)
T KOG1995|consen 106 ---------------IYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNT 145 (351)
T ss_pred ---------------ccccccccCcCCceeeeecChhhhhhhhhhhccccccCCC
Confidence 0011122334679999999999999999999999999954
No 181
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.72 E-value=0.064 Score=36.29 Aligned_cols=54 Identities=17% Similarity=0.301 Sum_probs=43.0
Q ss_pred CCEEEeCCCCCCCCHHHHHHHhhcc----CCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhc
Q 019418 6 SRTLYVGNLPGDTRMREVEDLFYKY----GPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGR 65 (341)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~----G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~l 65 (341)
...|+|.|+. +++.++|+.+|..| ++. .|.+..+ .-|=|.|.+.+.|.+||.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~-~IEWIdD----tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPF-RIEWIDD----TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCc-eEEEecC----CcEEEEECCHHHHHHHHHcC
Confidence 3579999995 68999999999999 543 5555532 35889999999999999764
No 182
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.66 E-value=0.011 Score=51.06 Aligned_cols=74 Identities=27% Similarity=0.328 Sum_probs=60.3
Q ss_pred CEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec--CCCCCcEEEEEEcCHHHHHHHHHhcCC----ceeCCeEEEEEEc
Q 019418 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDG----YNFDGYRLRVELA 80 (341)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~--~~~~~g~afV~F~~~e~A~~Ai~~lng----~~i~g~~l~v~~~ 80 (341)
..|||.||..-+..|.|.+.|..||+|....+.. .++..+-++|.|+..-.|.+|+..++- ....+.+.-|.+.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 6799999999999999999999999998765544 477788899999999999999988742 2334666666654
No 183
>KOG2548 consensus SWAP mRNA splicing regulator [RNA processing and modification]
Probab=95.43 E-value=0.013 Score=55.47 Aligned_cols=11 Identities=55% Similarity=0.446 Sum_probs=4.3
Q ss_pred CCCCCCCCCCC
Q 019418 324 PRSFSRSGSFA 334 (341)
Q Consensus 324 ~rs~s~s~s~~ 334 (341)
.|++++|-|..
T Consensus 460 rrsRsRs~s~r 470 (653)
T KOG2548|consen 460 RRSRSRSESLR 470 (653)
T ss_pred hhhhhccchhh
Confidence 33444444333
No 184
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.20 E-value=0.06 Score=40.37 Aligned_cols=28 Identities=14% Similarity=0.137 Sum_probs=23.6
Q ss_pred CceEEEEecChhhHHHHHHhcCccccccc
Q 019418 211 GMTGIVDYTSYDDMKYAIRKLDRSEFRNA 239 (341)
Q Consensus 211 ~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~ 239 (341)
.+-..|.|.++.+|.+|+ ..||+.+.|.
T Consensus 54 ~NWi~I~Y~~~~~A~rAL-~~NG~i~~g~ 81 (100)
T PF05172_consen 54 GNWIHITYDNPLSAQRAL-QKNGTIFSGS 81 (100)
T ss_dssp TTEEEEEESSHHHHHHHH-TTTTEEETTC
T ss_pred CCEEEEECCCHHHHHHHH-HhCCeEEcCc
Confidence 457799999999999999 5688888884
No 185
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=95.13 E-value=0.11 Score=36.68 Aligned_cols=59 Identities=24% Similarity=0.379 Sum_probs=37.9
Q ss_pred CCCCHHHHHHHhhccC-----CEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 019418 16 GDTRMREVEDLFYKYG-----PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (341)
Q Consensus 16 ~~~t~~~l~~~F~~~G-----~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~ 80 (341)
..++..+|..++...+ .|-.|.|. ..|+||+-.. +.|..++..|++..+.|++|.|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~-----~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIF-----DNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE------SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEe-----eeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4588889999887764 56678887 5699999864 5899999999999999999999875
No 186
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=95.10 E-value=0.026 Score=50.62 Aligned_cols=12 Identities=0% Similarity=0.125 Sum_probs=5.7
Q ss_pred CCCHHHHHHHHH
Q 019418 120 SASWQDLKDHMR 131 (341)
Q Consensus 120 ~~~~~~l~~~f~ 131 (341)
++++++|.++..
T Consensus 212 d~~k~eid~ic~ 223 (367)
T KOG0835|consen 212 DTTKREIDEICY 223 (367)
T ss_pred CCcHHHHHHHHH
Confidence 345555554443
No 187
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.96 E-value=0.054 Score=47.80 Aligned_cols=28 Identities=14% Similarity=0.199 Sum_probs=25.8
Q ss_pred eEEEEecChhhHHHHHHhcCcccccccc
Q 019418 213 TGIVDYTSYDDMKYAIRKLDRSEFRNAF 240 (341)
Q Consensus 213 ~gfV~f~~~~~a~~Ai~~l~g~~~~g~~ 240 (341)
-.||+|+..+.|.+|+-.|||+.|.|+.
T Consensus 331 RiFveF~r~e~aiKA~VdlnGRyFGGr~ 358 (378)
T KOG1996|consen 331 RIFVEFERVESAIKAVVDLNGRYFGGRV 358 (378)
T ss_pred eeeeeeccHHHHHHHHHhcCCceeccee
Confidence 4599999999999999999999999965
No 188
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.89 E-value=0.019 Score=53.83 Aligned_cols=75 Identities=15% Similarity=0.232 Sum_probs=61.7
Q ss_pred CCCEEEeCCCCCCC-CHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccCC
Q 019418 5 SSRTLYVGNLPGDT-RMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (341)
Q Consensus 5 ~~~~l~V~nLp~~~-t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~ 83 (341)
+.+.|-+.-+|+.. |.++|...|.+||+|..|.+-.. .--|.|+|.+..+|-.|.. .++..|+++.|+|-|-++.
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~---~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS---SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc---hhhheeeeeccccccchhc-cccceecCceeEEEEecCC
Confidence 45566666666664 56889999999999999988543 4579999999999988866 6999999999999998864
No 189
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.77 E-value=0.087 Score=49.26 Aligned_cols=68 Identities=22% Similarity=0.333 Sum_probs=60.0
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccC-CEeEEEeecCCCCCcE-EEEEEcCHHHHHHHHHhcCCceeCC
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYG-PIVDIDLKIPPRPPGY-AFLEFEDYRDAEDAIRGRDGYNFDG 72 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-~I~~i~i~~~~~~~g~-afV~F~~~e~A~~Ai~~lng~~i~g 72 (341)
+++.|+|-.+|..+|..||..|...|- .|.+|+|+.++.+..| ++|.|.+.++|....+.+||..|..
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 378999999999999999999998764 7889999887766555 7999999999999999999998863
No 190
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.73 E-value=0.013 Score=52.76 Aligned_cols=76 Identities=29% Similarity=0.427 Sum_probs=59.3
Q ss_pred CEEEeCCCCCCCCHHHHHH---HhhccCCEeEEEeecCC----C--CCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEE
Q 019418 7 RTLYVGNLPGDTRMREVED---LFYKYGPIVDIDLKIPP----R--PPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRV 77 (341)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~---~F~~~G~I~~i~i~~~~----~--~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v 77 (341)
.-+||-+|+..+-.+.+.+ .|.+||.|..|.+..+. . ...-++|+|...++|..||...+|..++|+.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 4578889998876666544 78999999999885421 1 1123899999999999999999999999999777
Q ss_pred EEccC
Q 019418 78 ELAHG 82 (341)
Q Consensus 78 ~~~~~ 82 (341)
.+...
T Consensus 158 ~~gtt 162 (327)
T KOG2068|consen 158 SLGTT 162 (327)
T ss_pred hhCCC
Confidence 66543
No 191
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.71 E-value=0.13 Score=43.18 Aligned_cols=62 Identities=29% Similarity=0.365 Sum_probs=45.8
Q ss_pred CHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcC--CceeCCeEEEEEEccCC
Q 019418 19 RMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRD--GYNFDGYRLRVELAHGG 83 (341)
Q Consensus 19 t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~ln--g~~i~g~~l~v~~~~~~ 83 (341)
..+.|+++|..|+.+..+.+.. +-+=..|.|.+.++|..|...|+ +..+.|..|+|.++...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~---sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK---SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET---TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcC---CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 4578999999999887776652 24568999999999999999999 99999999999998544
No 192
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.46 E-value=0.087 Score=46.73 Aligned_cols=71 Identities=18% Similarity=0.276 Sum_probs=53.4
Q ss_pred CEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeE-EEEEEccC
Q 019418 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYR-LRVELAHG 82 (341)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~-l~v~~~~~ 82 (341)
.=|-|-++|+.. ..-|..+|++||+|.+.... .+-.+-+|-|.+..+|++||. .||+.|+|-. |-|+.+..
T Consensus 198 ~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~---~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 198 TWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTP---SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred ceEEEeccCccc-hhHHHHHHHhhCeeeeeecC---CCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecCC
Confidence 345566776653 35677899999999887554 446799999999999999999 5999998765 45555543
No 193
>KOG1847 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.09 E-value=0.033 Score=54.08 Aligned_cols=42 Identities=26% Similarity=0.472 Sum_probs=30.9
Q ss_pred CCCCCCCHHHHHHH----hhccCCEeEEEeec-CCCCCcEEEEEEcC
Q 019418 13 NLPGDTRMREVEDL----FYKYGPIVDIDLKI-PPRPPGYAFLEFED 54 (341)
Q Consensus 13 nLp~~~t~~~l~~~----F~~~G~I~~i~i~~-~~~~~g~afV~F~~ 54 (341)
+||++..-.+|.+- ....|.-.+|.|+. .+.+..|+|+.|..
T Consensus 181 eLPpt~KlH~IIerTaSFV~~~G~Q~EIvlkaKQ~~N~qFgFL~fDH 227 (878)
T KOG1847|consen 181 ELPPTEKLHQIIERTASFVSKHGGQSEIVLKAKQGDNPQFGFLMFDH 227 (878)
T ss_pred cCCchHHHHHHHHHHHHHHhhcCcceEEEeeeccCCCcccceecccc
Confidence 78998888888774 34557666776643 56668899999973
No 194
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.07 E-value=0.077 Score=50.83 Aligned_cols=68 Identities=18% Similarity=0.281 Sum_probs=52.9
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhc--cCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCC--ceeCCeEEE
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYK--YGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDG--YNFDGYRLR 76 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~--~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng--~~i~g~~l~ 76 (341)
.-|.|.|.-||.++-+|+|+.||.. |-++++|.+..+ .-=||+|++..||++|.+.|.. ..|.|++|.
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N----~nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN----DNWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec----CceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 4567888999999999999999964 778889988542 2359999999999999876643 345555544
No 195
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=93.93 E-value=0.038 Score=47.89 Aligned_cols=30 Identities=17% Similarity=0.149 Sum_probs=27.5
Q ss_pred CceEEEEecChhhHHHHHHhcCcccccccc
Q 019418 211 GMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 240 (341)
Q Consensus 211 ~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~ 240 (341)
.|.++|+|...++|++|+..||+.++.|+.
T Consensus 110 ~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~p 139 (260)
T KOG2202|consen 110 VGNVYVKFRSEEDAEAALEDLNNRWYNGRP 139 (260)
T ss_pred hhhhhhhcccHHHHHHHHHHHcCccccCCc
Confidence 457899999999999999999999999965
No 196
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=93.52 E-value=0.073 Score=48.06 Aligned_cols=73 Identities=16% Similarity=0.155 Sum_probs=55.8
Q ss_pred CcceeeeeCCCCCCCHHHHHHHHHHhCC--eeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCcccccccee
Q 019418 108 SDYRVLVTGLPSSASWQDLKDHMRRAGD--VCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRI 185 (341)
Q Consensus 108 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~--i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~ 185 (341)
...++||+||-..+|++||.+.+...|- |.++.+...+ .-|++
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR---------------------~NGQS-------------- 123 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENR---------------------TNGQS-------------- 123 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcc---------------------cCCcc--------------
Confidence 3478999999999999999999888773 2222222222 22333
Q ss_pred EEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCcccccccc
Q 019418 186 FFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 240 (341)
Q Consensus 186 ~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~ 240 (341)
+||+.|...+....++.++.|-.++++|+.
T Consensus 124 -------------------------KG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~ 153 (498)
T KOG4849|consen 124 -------------------------KGYALLVLNSDAAVKQTMEILPTKTIHGQS 153 (498)
T ss_pred -------------------------cceEEEEecchHHHHHHHHhcccceecCCC
Confidence 779999999999999999999999999975
No 197
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=93.48 E-value=0.62 Score=31.55 Aligned_cols=36 Identities=17% Similarity=0.069 Sum_probs=26.7
Q ss_pred ceeeeeCCCCCCCHHHHHHHHHHhC---CeeEEEEeeCCc
Q 019418 110 YRVLVTGLPSSASWQDLKDHMRRAG---DVCFSQVFRDRG 146 (341)
Q Consensus 110 ~~l~V~nlp~~~~~~~l~~~f~~~G---~i~~~~i~~~~~ 146 (341)
..|+|.|+. +++-++|+.+|..|. ....++..-|..
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDtS 44 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDTS 44 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCCc
Confidence 478899974 588899999999992 355666666544
No 198
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=93.24 E-value=0.0035 Score=57.70 Aligned_cols=77 Identities=16% Similarity=0.302 Sum_probs=66.5
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~ 81 (341)
-++.|.|.|||+..-++.|..|...||.|+.|....+....-..-|+|...+.+..||..|||..+....++|.|-.
T Consensus 79 rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiP 155 (584)
T KOG2193|consen 79 RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIP 155 (584)
T ss_pred HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCc
Confidence 45678999999999999999999999999999886544334455688999999999999999999999999998753
No 199
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=92.77 E-value=0.071 Score=53.54 Aligned_cols=74 Identities=18% Similarity=0.136 Sum_probs=61.7
Q ss_pred EEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCcee--CCeEEEEEEccCCC
Q 019418 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNF--DGYRLRVELAHGGR 84 (341)
Q Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i--~g~~l~v~~~~~~~ 84 (341)
+.++-|.+-+.+-.-|..+|.+||.|.+++... .-..|.|+|...+.|..|+++|+|.++ .|-+.+|.+++...
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr---~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLR---DLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecc---cccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 345566677788889999999999999998863 256899999999999999999999876 58889999887543
No 200
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=92.69 E-value=0.11 Score=45.47 Aligned_cols=101 Identities=16% Similarity=0.186 Sum_probs=56.1
Q ss_pred CcEEEEEEcCH----HHHHHHHHhcCCceeC--C--eEEEEEEccCCCCCCCCCCCCCCCCCCC--CCCCCCCCcceeee
Q 019418 45 PGYAFLEFEDY----RDAEDAIRGRDGYNFD--G--YRLRVELAHGGRRHSSSMDRYSSYSSGG--SRGVSRRSDYRVLV 114 (341)
Q Consensus 45 ~g~afV~F~~~----e~A~~Ai~~lng~~i~--g--~~l~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~V 114 (341)
...-||.|.-+ --.+..+..|+|..|. | -+|+|..+.....-+...+....+.... ....|..-..+|++
T Consensus 75 snid~iifeael~n~gimkk~l~~ldgfsiklsgfad~lkvka~eakidfpsrhdwdd~fm~~kdmdemkpgerpdti~l 154 (445)
T KOG2891|consen 75 SNIDFIIFEAELENKGIMKKFLACLDGFSIKLSGFADILKVKAAEAKIDFPSRHDWDDFFMDAKDMDEMKPGERPDTIHL 154 (445)
T ss_pred cccceEEeeHhhhhhhHHHHHHHHhcCCeeeecccchHHhhhHHhhcCCCCcccchHHHHhhhhhhhccCCCCCCCceee
Confidence 34678888643 3455566777776543 2 2444544433332222222221111111 11123333457888
Q ss_pred eCCCCC------------CCHHHHHHHHHHhCCeeEEEEeeCC
Q 019418 115 TGLPSS------------ASWQDLKDHMRRAGDVCFSQVFRDR 145 (341)
Q Consensus 115 ~nlp~~------------~~~~~l~~~f~~~G~i~~~~i~~~~ 145 (341)
.+||-. .+++-|...|..||+|..|+|+.-.
T Consensus 155 a~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicd 197 (445)
T KOG2891|consen 155 AGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICD 197 (445)
T ss_pred cCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccc
Confidence 888754 2456799999999999999887543
No 201
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=91.56 E-value=0.3 Score=46.09 Aligned_cols=53 Identities=11% Similarity=0.169 Sum_probs=34.3
Q ss_pred CCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCcee
Q 019418 14 LPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNF 70 (341)
Q Consensus 14 Lp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i 70 (341)
+......+-...+|+.+|-++...+-. ..-|+-.|.+. +.|..++..++-..|
T Consensus 205 p~ks~~s~~r~k~fee~g~~~r~el~p--~~hg~~~vv~~--enan~~m~s~da~ei 257 (526)
T KOG2135|consen 205 PEKSRNSENRRKFFEEFGVLERGELCP--THHGCVPVVSK--ENANKTMKSEDAAEI 257 (526)
T ss_pred cccccccHHhhhhhHhhceeeeccccc--cccccceeEee--ccccccccCCcchhh
Confidence 335577888999999999886665532 23455566665 667666665544433
No 202
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=91.51 E-value=0.62 Score=33.43 Aligned_cols=31 Identities=16% Similarity=0.218 Sum_probs=21.3
Q ss_pred eeeeeCCCCCCCHHHHHHHHHHhCCeeEEEE
Q 019418 111 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQV 141 (341)
Q Consensus 111 ~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i 141 (341)
.||--.+|..+...||.++|..||.|.-.-|
T Consensus 10 HVFhltFPkeWK~~DI~qlFspfG~I~VsWi 40 (87)
T PF08675_consen 10 HVFHLTFPKEWKTSDIYQLFSPFGQIYVSWI 40 (87)
T ss_dssp CEEEEE--TT--HHHHHHHCCCCCCEEEEEE
T ss_pred eEEEEeCchHhhhhhHHHHhccCCcEEEEEE
Confidence 4554449999999999999999999865554
No 203
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=91.45 E-value=0.42 Score=34.84 Aligned_cols=73 Identities=22% Similarity=0.343 Sum_probs=44.6
Q ss_pred EEEEEcCHHHHHHHHHhc-CCceeCCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeeeCCCCCCCHHHH
Q 019418 48 AFLEFEDYRDAEDAIRGR-DGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDL 126 (341)
Q Consensus 48 afV~F~~~e~A~~Ai~~l-ng~~i~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l 126 (341)
|+|+|.++.-|++.++.- +...+++..+.|....-......... -.......+|.|.|||....+++|
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~q-----------v~~~vs~rtVlvsgip~~l~ee~l 69 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQ-----------VFSGVSKRTVLVSGIPDVLDEEEL 69 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEE-----------EEEcccCCEEEEeCCCCCCChhhh
Confidence 789999999999998732 12334566655554322111100000 011223468999999999999999
Q ss_pred HHHHH
Q 019418 127 KDHMR 131 (341)
Q Consensus 127 ~~~f~ 131 (341)
++.+.
T Consensus 70 ~D~Le 74 (88)
T PF07292_consen 70 RDKLE 74 (88)
T ss_pred eeeEE
Confidence 98644
No 204
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=91.34 E-value=0.15 Score=49.41 Aligned_cols=35 Identities=17% Similarity=0.213 Sum_probs=28.1
Q ss_pred CCCCcceeeeeCCCCCCCHHHHHHHHHHhC-CeeEE
Q 019418 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAG-DVCFS 139 (341)
Q Consensus 105 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G-~i~~~ 139 (341)
.....+.|+|.||--..|.-+|++++..-| .|+..
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~ 475 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF 475 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH
Confidence 445567899999999999999999999655 55554
No 205
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=91.07 E-value=0.99 Score=43.57 Aligned_cols=66 Identities=14% Similarity=0.169 Sum_probs=47.0
Q ss_pred CHHHHHHHHHhcCCceeCCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeeeCCCCCCCHHHHHHHHHH-
Q 019418 54 DYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRR- 132 (341)
Q Consensus 54 ~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~- 132 (341)
|.+-...+|....+..++.+-++|..... .+.|.|..||..+-.|+++.+|+-
T Consensus 146 DvdLI~Evlresp~VqvDekgekVrp~~k--------------------------RcIvilREIpettp~e~Vk~lf~~e 199 (684)
T KOG2591|consen 146 DVDLIVEVLRESPNVQVDEKGEKVRPNHK--------------------------RCIVILREIPETTPIEVVKALFKGE 199 (684)
T ss_pred chHHHHHHHhcCCCceeccCccccccCcc--------------------------eeEEEEeecCCCChHHHHHHHhccC
Confidence 44555667777777777777766655432 156788999999999999999985
Q ss_pred -hCCeeEEEEeeCC
Q 019418 133 -AGDVCFSQVFRDR 145 (341)
Q Consensus 133 -~G~i~~~~i~~~~ 145 (341)
+-.++.|++....
T Consensus 200 ncPk~iscefa~N~ 213 (684)
T KOG2591|consen 200 NCPKVISCEFAHND 213 (684)
T ss_pred CCCCceeeeeeecC
Confidence 3356777765443
No 206
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=90.47 E-value=1 Score=36.08 Aligned_cols=27 Identities=19% Similarity=0.117 Sum_probs=23.1
Q ss_pred eEEEEecChhhHHHHHHhcCcccccccc
Q 019418 213 TGIVDYTSYDDMKYAIRKLDRSEFRNAF 240 (341)
Q Consensus 213 ~gfV~f~~~~~a~~Ai~~l~g~~~~g~~ 240 (341)
.-.|+|.+-..|.+|+ .++|.++.|+.
T Consensus 72 ~mwVTF~dg~sALaal-s~dg~~v~g~~ 98 (146)
T PF08952_consen 72 TMWVTFRDGQSALAAL-SLDGIQVNGRT 98 (146)
T ss_dssp CEEEEESSCHHHHHHH-HGCCSEETTEE
T ss_pred eEEEEECccHHHHHHH-ccCCcEECCEE
Confidence 4589999999999998 68999999954
No 207
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=89.57 E-value=2.7 Score=28.86 Aligned_cols=55 Identities=25% Similarity=0.417 Sum_probs=44.1
Q ss_pred CCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEE
Q 019418 17 DTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRV 77 (341)
Q Consensus 17 ~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v 77 (341)
.++-++|+..+..|+-. .|..-. .| -||.|.+.++|+++....+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~-~I~~d~----tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD-RIRDDR----TG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc-eEEecC----CE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 57889999999999743 444432 33 489999999999999999999988877664
No 208
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=89.10 E-value=0.28 Score=39.66 Aligned_cols=119 Identities=17% Similarity=0.110 Sum_probs=77.0
Q ss_pred EEeCCCC--CCCCHHHHHHHhhcc-CCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccCCCC
Q 019418 9 LYVGNLP--GDTRMREVEDLFYKY-GPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRR 85 (341)
Q Consensus 9 l~V~nLp--~~~t~~~l~~~F~~~-G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~~~ 85 (341)
..|+.+. ..++-..|.+.+.+. +....+.+..- ..++..++|.+++++..++. .....+++..|.+....+...
T Consensus 18 ~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l--~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~ 94 (153)
T PF14111_consen 18 CLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL--GDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFN 94 (153)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe--CCCeEEEEEEeccceeEEEe-cccccccccchhhhhhccccc
Confidence 4444442 245666666666542 32223333221 26899999999999999987 355677888888887764322
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcceeeeeCCCCC-CCHHHHHHHHHHhCCeeEEEEeeC
Q 019418 86 HSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRD 144 (341)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~-~~~~~l~~~f~~~G~i~~~~i~~~ 144 (341)
.... .......=|.|.|||.. ++++-|+.+...+|++..++....
T Consensus 95 ~~~~--------------~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 95 PSEV--------------KFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred cccc--------------ceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 1110 01111234678899998 778889999999999998887644
No 209
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=88.87 E-value=0.07 Score=47.90 Aligned_cols=22 Identities=18% Similarity=0.190 Sum_probs=16.0
Q ss_pred EEEEeecchhhHHhhhcccccc
Q 019418 186 FFIYFKCMRLSYFKHFRESYHN 207 (341)
Q Consensus 186 ~fi~~~~~~~s~~~~~~~~~~~ 207 (341)
||+.+.+.+-=|.+||+.+.|.
T Consensus 194 a~L~~~D~d~RlaDHf~GKlHl 215 (319)
T KOG0796|consen 194 AFLSVNDADRRLADHFGGKLHL 215 (319)
T ss_pred HHHhccchHHHHHHhhcchHHH
Confidence 5556666666689999888886
No 210
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=88.28 E-value=1 Score=39.80 Aligned_cols=48 Identities=19% Similarity=0.301 Sum_probs=37.8
Q ss_pred CCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCH
Q 019418 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDY 55 (341)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~ 55 (341)
.+-|||+|||.++-..||+..+.+.|.+ -+.|.+.|+ .|-||+.|-+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~iswkg~-~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECT-PMSISWKGH-FGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCC-ceeEeeecC-CcceeEecCCc
Confidence 3569999999999999999999988743 444444444 67899999864
No 211
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.53 E-value=3.1 Score=40.56 Aligned_cols=75 Identities=20% Similarity=0.325 Sum_probs=59.2
Q ss_pred CCCCCEEEeCCCCCC-CCHHHHHHHhhcc----CCEeEEEeec-------------CCC---------------------
Q 019418 3 SRSSRTLYVGNLPGD-TRMREVEDLFYKY----GPIVDIDLKI-------------PPR--------------------- 43 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~-~t~~~l~~~F~~~----G~I~~i~i~~-------------~~~--------------------- 43 (341)
...+++|-|-||.++ +.-++|.-+|+.| |.|..|.|.. +|-
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 357889999999987 7889999999877 6899998822 111
Q ss_pred ----------------CCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEE
Q 019418 44 ----------------PPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRV 77 (341)
Q Consensus 44 ----------------~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v 77 (341)
-.-||.|+|.+.+.|.+....|+|..|..-...+
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~ 300 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKL 300 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceecccccee
Confidence 0237999999999999999999999997443333
No 212
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=86.66 E-value=5.5 Score=30.44 Aligned_cols=28 Identities=4% Similarity=0.133 Sum_probs=25.7
Q ss_pred eEEEEecChhhHHHHHHhcCcccccccc
Q 019418 213 TGIVDYTSYDDMKYAIRKLDRSEFRNAF 240 (341)
Q Consensus 213 ~gfV~f~~~~~a~~Ai~~l~g~~~~g~~ 240 (341)
.+.++|.+.++|.+-...+||+.++.-+
T Consensus 56 mVLikF~~~~~Ad~Fy~~fNGk~FnslE 83 (110)
T PF07576_consen 56 MVLIKFRDQESADEFYEEFNGKPFNSLE 83 (110)
T ss_pred EEEEEECCHHHHHHHHHHhCCCccCCCC
Confidence 6789999999999999999999998765
No 213
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=85.95 E-value=1.6 Score=36.43 Aligned_cols=28 Identities=14% Similarity=0.301 Sum_probs=19.6
Q ss_pred cceeeeeCCCCCCCHHHHHHHHHH-hCCe
Q 019418 109 DYRVLVTGLPSSASWQDLKDHMRR-AGDV 136 (341)
Q Consensus 109 ~~~l~V~nlp~~~~~~~l~~~f~~-~G~i 136 (341)
...|.|.+||+.++++++.+.+.. +++.
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~ 35 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDE 35 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccc
Confidence 468999999999999999887776 5544
No 214
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=84.45 E-value=0.39 Score=43.23 Aligned_cols=10 Identities=10% Similarity=0.136 Sum_probs=3.9
Q ss_pred CCHHHHHHHH
Q 019418 121 ASWQDLKDHM 130 (341)
Q Consensus 121 ~~~~~l~~~f 130 (341)
+|..+|..++
T Consensus 140 lTrKQ~~gll 149 (453)
T KOG2888|consen 140 LTRKQLIGLL 149 (453)
T ss_pred hHHHHHHHHh
Confidence 3333443333
No 215
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=81.43 E-value=0.97 Score=41.00 Aligned_cols=74 Identities=15% Similarity=0.116 Sum_probs=53.8
Q ss_pred ceeeeeCCCCCCCHHHH---HHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeE
Q 019418 110 YRVLVTGLPSSASWQDL---KDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIF 186 (341)
Q Consensus 110 ~~l~V~nlp~~~~~~~l---~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~ 186 (341)
.-+||-+|+.....+.+ .++|.+||.|..+.+..+... +...
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~--------------------~s~~--------------- 122 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSS--------------------SSSS--------------- 122 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCccc--------------------ccCC---------------
Confidence 45788889988765554 368899999999888765420 0000
Q ss_pred EEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCcccccccc
Q 019418 187 FIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 240 (341)
Q Consensus 187 fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~ 240 (341)
++.--++|+|...++|..||...+|..++|+.
T Consensus 123 ----------------------~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 123 ----------------------GGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred ----------------------CCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 00124799999999999999999999998865
No 216
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=80.96 E-value=6.5 Score=28.42 Aligned_cols=57 Identities=11% Similarity=0.183 Sum_probs=43.9
Q ss_pred EEEeCCCCCCCCHHHHHHHhhc-cC-CEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHh
Q 019418 8 TLYVGNLPGDTRMREVEDLFYK-YG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRG 64 (341)
Q Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~-~G-~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~ 64 (341)
.-|+=-++..++..+|.+.++. || +|..|..........=|||.+...+.|......
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHh
Confidence 3455567889999999999987 56 788888765544556799999999988877543
No 217
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=80.63 E-value=4.3 Score=34.16 Aligned_cols=28 Identities=18% Similarity=0.101 Sum_probs=24.2
Q ss_pred eEEEEecChhhHHHHHHhcC--cccccccc
Q 019418 213 TGIVDYTSYDDMKYAIRKLD--RSEFRNAF 240 (341)
Q Consensus 213 ~gfV~f~~~~~a~~Ai~~l~--g~~~~g~~ 240 (341)
-..|.|.+.++|..|...|+ +..+.|..
T Consensus 33 Ri~v~f~~~~~A~~~r~~l~~~~~~~~g~~ 62 (184)
T PF04847_consen 33 RIRVVFESPESAQRARQLLHWDGTSFNGKR 62 (184)
T ss_dssp EEEEE-SSTTHHHHHHHTST--TSEETTEE
T ss_pred EEEEEeCCHHHHHHHHHHhcccccccCCCc
Confidence 57899999999999999999 89999954
No 218
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=80.02 E-value=7.9 Score=27.49 Aligned_cols=56 Identities=13% Similarity=0.191 Sum_probs=43.0
Q ss_pred EEEeCCCCCCCCHHHHHHHhhc-cC-CEeEEEeecCCCCCcEEEEEEcCHHHHHHHHH
Q 019418 8 TLYVGNLPGDTRMREVEDLFYK-YG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIR 63 (341)
Q Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~-~G-~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~ 63 (341)
.-|+=.++.++|..+|.+.++. || +|..|.........-=|||.+...+.|...-.
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHH
Confidence 4566678899999999999987 56 77777775544445579999998888877644
No 219
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=80.01 E-value=2.6 Score=37.64 Aligned_cols=77 Identities=18% Similarity=0.230 Sum_probs=57.3
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCC----------CCCcEEEEEEcCHHHHHHHH----HhcCC--c
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPP----------RPPGYAFLEFEDYRDAEDAI----RGRDG--Y 68 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~----------~~~g~afV~F~~~e~A~~Ai----~~lng--~ 68 (341)
-++.|...||..+++-..+...|-+||+|+.|.+.... .......+.|-+.+.|-... +.|+. .
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 46778899999999999999999999999999996532 33467899999988876543 22222 3
Q ss_pred eeCCeEEEEEEcc
Q 019418 69 NFDGYRLRVELAH 81 (341)
Q Consensus 69 ~i~g~~l~v~~~~ 81 (341)
.+.-..|.|.+..
T Consensus 94 ~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 94 KLKSESLTLSFVS 106 (309)
T ss_pred hcCCcceeEEEEE
Confidence 3556667766643
No 220
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=79.98 E-value=3.6 Score=32.74 Aligned_cols=21 Identities=10% Similarity=0.210 Sum_probs=19.1
Q ss_pred eEEEEecChhhHHHHHHhcCc
Q 019418 213 TGIVDYTSYDDMKYAIRKLDR 233 (341)
Q Consensus 213 ~gfV~f~~~~~a~~Ai~~l~g 233 (341)
.++|.|.+...|-.|+.++..
T Consensus 127 savVvF~d~~SAC~Av~Af~s 147 (166)
T PF15023_consen 127 SAVVVFKDITSACKAVSAFQS 147 (166)
T ss_pred eEEEEehhhHHHHHHHHhhcC
Confidence 589999999999999999875
No 221
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=77.54 E-value=10 Score=36.04 Aligned_cols=70 Identities=10% Similarity=0.112 Sum_probs=59.5
Q ss_pred cceeeeeCCCCCCCHHHHHHHHHHhC-CeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEE
Q 019418 109 DYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFF 187 (341)
Q Consensus 109 ~~~l~V~nlp~~~~~~~l~~~f~~~G-~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~f 187 (341)
.+.|.|-.+|..++.-||..++..+- .|.++.|++++. .|
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~------------------------------pn--------- 114 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM------------------------------PN--------- 114 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC------------------------------Cc---------
Confidence 57899999999999999999998776 688999998765 11
Q ss_pred EEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCcccccccc
Q 019418 188 IYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 240 (341)
Q Consensus 188 i~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~ 240 (341)
.-...|+|.+.++|..-...+||+.|+.-.
T Consensus 115 -----------------------rymvLIkFr~q~da~~Fy~efNGk~Fn~le 144 (493)
T KOG0804|consen 115 -----------------------RYMVLIKFRDQADADTFYEEFNGKQFNSLE 144 (493)
T ss_pred -----------------------eEEEEEEeccchhHHHHHHHcCCCcCCCCC
Confidence 226799999999999999999999998755
No 222
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=74.21 E-value=5.4 Score=35.77 Aligned_cols=63 Identities=19% Similarity=0.200 Sum_probs=47.2
Q ss_pred cceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEEE
Q 019418 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFI 188 (341)
Q Consensus 109 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi 188 (341)
+.=|.|-++|+... .-|..+|.+||+|++.......
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~ng------------------------------------------- 232 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPSNG------------------------------------------- 232 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecCCCC-------------------------------------------
Confidence 34466667776644 3467789999999887766333
Q ss_pred EeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccc
Q 019418 189 YFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 239 (341)
Q Consensus 189 ~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~ 239 (341)
+.-.|.|.+..+|++||.+ ||+.|+|.
T Consensus 233 -----------------------NwMhirYssr~~A~KALsk-ng~ii~g~ 259 (350)
T KOG4285|consen 233 -----------------------NWMHIRYSSRTHAQKALSK-NGTIIDGD 259 (350)
T ss_pred -----------------------ceEEEEecchhHHHHhhhh-cCeeeccc
Confidence 4778999999999999954 78888884
No 223
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=73.73 E-value=2.5 Score=32.64 Aligned_cols=50 Identities=20% Similarity=0.279 Sum_probs=26.8
Q ss_pred EEEeCCCCCC---------CCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHH
Q 019418 8 TLYVGNLPGD---------TRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRD 57 (341)
Q Consensus 8 ~l~V~nLp~~---------~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~ 57 (341)
++.|-|++.. ++.++|.+.|..|.+++-..+-....+.|+++|+|..--.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~ 68 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWS 68 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChH
Confidence 5678888654 3567899999999887533332234558999999986443
No 224
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=72.12 E-value=2.4 Score=43.15 Aligned_cols=73 Identities=16% Similarity=0.137 Sum_probs=56.6
Q ss_pred eeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEEEEe
Q 019418 111 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFIYF 190 (341)
Q Consensus 111 ~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi~~ 190 (341)
+.++.|.+...+-.-|..+|.+||.|......++-.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N-------------------------------------------- 335 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN-------------------------------------------- 335 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccccc--------------------------------------------
Confidence 345566667777778999999999999998877765
Q ss_pred ecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeecc
Q 019418 191 KCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 251 (341)
Q Consensus 191 ~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~ 251 (341)
.+.|+|.+.+.|..|.++|+|+++--.. .+.+|...+
T Consensus 336 ----------------------~alvs~~s~~sai~a~dAl~gkevs~~g--~Ps~V~~ak 372 (1007)
T KOG4574|consen 336 ----------------------MALVSFSSVESAILALDALQGKEVSVTG--APSRVSFAK 372 (1007)
T ss_pred ----------------------chhhhhHHHHHHHHhhhhhcCCcccccC--CceeEEecc
Confidence 7899999999999999999999864322 344554443
No 225
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=70.85 E-value=2.8 Score=37.89 Aligned_cols=12 Identities=17% Similarity=0.307 Sum_probs=5.6
Q ss_pred EEEcCHHHHHHH
Q 019418 50 LEFEDYRDAEDA 61 (341)
Q Consensus 50 V~F~~~e~A~~A 61 (341)
|.|.++.-+..-
T Consensus 26 v~~~D~~VC~~f 37 (319)
T KOG0796|consen 26 VKFDDPDVCKSF 37 (319)
T ss_pred CCCCchhHHHHH
Confidence 455554444443
No 226
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=70.03 E-value=4.6 Score=33.48 Aligned_cols=76 Identities=18% Similarity=0.245 Sum_probs=55.1
Q ss_pred CCEEEeCCCCCCCCH-----HHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCe-EEEEEE
Q 019418 6 SRTLYVGNLPGDTRM-----REVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY-RLRVEL 79 (341)
Q Consensus 6 ~~~l~V~nLp~~~t~-----~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~-~l~v~~ 79 (341)
.++|++.+|+..+-. ....++|-+|-+..-..+. ++.+..-|.|.+++.|..|...+++..|.|+ .++.-+
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l---rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yf 86 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL---RSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYF 86 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH---HhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEE
Confidence 356788888766432 2345667766655444443 2356778899999999999999999999988 888888
Q ss_pred ccCCC
Q 019418 80 AHGGR 84 (341)
Q Consensus 80 ~~~~~ 84 (341)
+....
T Consensus 87 aQ~~~ 91 (193)
T KOG4019|consen 87 AQPGH 91 (193)
T ss_pred ccCCC
Confidence 77643
No 227
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=69.33 E-value=0.75 Score=44.35 Aligned_cols=69 Identities=14% Similarity=0.189 Sum_probs=53.7
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCe
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY 73 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~ 73 (341)
..|+|||.|++++++-++|..++..+--+..+.+.. ......+++|+|.---....|+.+||+..+.-.
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~ 301 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSN 301 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccc
Confidence 357899999999999999999999886666665532 233456789999988888888888888766543
No 228
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=69.04 E-value=35 Score=33.86 Aligned_cols=44 Identities=25% Similarity=0.345 Sum_probs=31.2
Q ss_pred CCCCCCcceeeeeCCCCC-CCHHHHHHHHHHhCCeeEEEEeeCCc
Q 019418 103 GVSRRSDYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDRG 146 (341)
Q Consensus 103 ~~~~~~~~~l~V~nlp~~-~~~~~l~~~f~~~G~i~~~~i~~~~~ 146 (341)
+.-...+..+.|.+++.+ +....--+.+.+.|.+..+.|.+...
T Consensus 55 G~LQenDrvvMVNGvsMenv~haFAvQqLrksgK~A~ItvkRprk 99 (1027)
T KOG3580|consen 55 GLLQENDRVVMVNGVSMENVLHAFAVQQLRKSGKVAAITVKRPRK 99 (1027)
T ss_pred cccccCCeEEEEcCcchhhhHHHHHHHHHHhhccceeEEecccce
Confidence 344556678889888876 44445567778899888888877655
No 229
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=68.33 E-value=5.3 Score=37.04 Aligned_cols=67 Identities=18% Similarity=0.201 Sum_probs=49.5
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccC-CEeEEEeec-----CCCCCcEEEEEEcCHHHHHHHHHhcCCceeC
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYG-PIVDIDLKI-----PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD 71 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-~I~~i~i~~-----~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~ 71 (341)
.-+.|.|.+||+..|+++|.+-...|- .|....+.. ..+-.+.|||.|..+++...-...++|+.|.
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 457899999999999999998877753 222222221 1233678999999999988888888887664
No 230
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=67.11 E-value=16 Score=25.26 Aligned_cols=59 Identities=19% Similarity=0.280 Sum_probs=43.5
Q ss_pred HHHHHHhhccC-CEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccC
Q 019418 21 REVEDLFYKYG-PIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (341)
Q Consensus 21 ~~l~~~F~~~G-~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~ 82 (341)
++|.+.|...| ++..|.-+. ++.+...-||+.....+... .|+=+.|+|+.+.|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcc
Confidence 57889999999 888887765 34556778888876654444 3566778999999988654
No 231
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.90 E-value=9.6 Score=35.55 Aligned_cols=56 Identities=18% Similarity=0.258 Sum_probs=44.9
Q ss_pred CCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHh
Q 019418 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRG 64 (341)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~ 64 (341)
...|=|.|+|.....+||..+|+.|+. ..++|+|-. ...||-.|.....|..||..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~-kgfdIkWvD--dthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQN-KGFDIKWVD--DTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhc-CCceeEEee--cceeEEeecchHHHHHHhhc
Confidence 357889999999999999999999975 255555411 34799999999999999873
No 232
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=66.33 E-value=37 Score=22.77 Aligned_cols=48 Identities=21% Similarity=0.355 Sum_probs=32.9
Q ss_pred CHHHHHHHhhccC-CEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCc
Q 019418 19 RMREVEDLFYKYG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68 (341)
Q Consensus 19 t~~~l~~~F~~~G-~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~ 68 (341)
.-.+|-++|.+.| .|..+.+...+. +++.-+.+.+.+.|.++++. +|.
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~~-~~~~rl~~~~~~~~~~~L~~-~G~ 62 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTSE-FGILRLIVSDPDKAKEALKE-AGF 62 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecCC-CCEEEEEECCHHHHHHHHHH-CCC
Confidence 3467888888887 788887754433 56666677777777777764 443
No 233
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=64.99 E-value=7.1 Score=34.54 Aligned_cols=66 Identities=18% Similarity=0.473 Sum_probs=46.5
Q ss_pred CCCEEEeCCCCCC------------CCHHHHHHHhhccCCEeEEEeec--------CCCC-----CcEE---------EE
Q 019418 5 SSRTLYVGNLPGD------------TRMREVEDLFYKYGPIVDIDLKI--------PPRP-----PGYA---------FL 50 (341)
Q Consensus 5 ~~~~l~V~nLp~~------------~t~~~l~~~F~~~G~I~~i~i~~--------~~~~-----~g~a---------fV 50 (341)
-..|||+.+||-. -+++-|...|+.||.|..|.|+. +++. .||+ ||
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayv 227 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYV 227 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHH
Confidence 3468999999853 35678999999999999999854 3332 3443 46
Q ss_pred EEcCHHHHHHHHHhcCCcee
Q 019418 51 EFEDYRDAEDAIRGRDGYNF 70 (341)
Q Consensus 51 ~F~~~e~A~~Ai~~lng~~i 70 (341)
+|...---..|+..|-|+.+
T Consensus 228 qfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 228 QFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHHhHHHHHHHHhcchH
Confidence 66666666677777777654
No 234
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=63.72 E-value=6.2 Score=39.15 Aligned_cols=38 Identities=16% Similarity=-0.001 Sum_probs=31.4
Q ss_pred CCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEE
Q 019418 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQV 141 (341)
Q Consensus 104 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i 141 (341)
.+.....++||+|+...+..+-++..+..+|.|..+..
T Consensus 35 ~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr 72 (668)
T KOG2253|consen 35 QPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKR 72 (668)
T ss_pred cCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhh
Confidence 34455679999999999999999999999998766544
No 235
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.35 E-value=37 Score=33.45 Aligned_cols=40 Identities=13% Similarity=0.157 Sum_probs=31.8
Q ss_pred CCCcceeeeeCCCCC-CCHHHHHHHHHHh----CCeeEEEEeeCC
Q 019418 106 RRSDYRVLVTGLPSS-ASWQDLKDHMRRA----GDVCFSQVFRDR 145 (341)
Q Consensus 106 ~~~~~~l~V~nlp~~-~~~~~l~~~f~~~----G~i~~~~i~~~~ 145 (341)
.....+|-|.||..+ +...+|.-+|..| |.|..|.|+...
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSe 215 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSE 215 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhh
Confidence 345678999999987 7788998888876 589999988653
No 236
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=63.23 E-value=23 Score=24.41 Aligned_cols=60 Identities=20% Similarity=0.292 Sum_probs=43.5
Q ss_pred HHHHHHhhccC-CEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccCC
Q 019418 21 REVEDLFYKYG-PIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (341)
Q Consensus 21 ~~l~~~F~~~G-~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~ 83 (341)
++|.+.|...| +|..|.-+. ++.+...-||+.+...+... .++=..+++..+.|+.....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCCCC
Confidence 57888888888 777776644 34566788888887766333 35667789999999987643
No 237
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=60.38 E-value=11 Score=31.26 Aligned_cols=54 Identities=15% Similarity=0.160 Sum_probs=35.7
Q ss_pred CEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecC--C--CCCcEEEEEEcCHHHHHHHHHh
Q 019418 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP--P--RPPGYAFLEFEDYRDAEDAIRG 64 (341)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~--~--~~~g~afV~F~~~e~A~~Ai~~ 64 (341)
+++|.. +.+...++|.++-+ |++..|.+... + ..+|-.||+|.+.++|.+.++.
T Consensus 112 r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 112 RTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred hhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 344544 33333344444444 78888888552 2 4578899999999999998763
No 238
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=57.51 E-value=50 Score=29.53 Aligned_cols=34 Identities=24% Similarity=0.340 Sum_probs=27.6
Q ss_pred CCCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCC
Q 019418 102 RGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGD 135 (341)
Q Consensus 102 ~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~ 135 (341)
.+.......-|+|+|||.++...||+..+.+.+.
T Consensus 323 ~g~~a~~~~di~~~nl~rd~rv~dlk~~lr~~~~ 356 (396)
T KOG4410|consen 323 SGVEAGAKTDIKLTNLSRDIRVKDLKSELRKREC 356 (396)
T ss_pred CcccCccccceeeccCccccchHHHHHHHHhcCC
Confidence 3444455567999999999999999999998874
No 239
>PF14893 PNMA: PNMA
Probab=56.96 E-value=13 Score=34.37 Aligned_cols=55 Identities=22% Similarity=0.291 Sum_probs=35.5
Q ss_pred CCCCCCCEEEeCCCCCCCCHHHHHHHhh----ccCCEeEEE-eecCCCCCcEEEEEEcCH
Q 019418 1 MSSRSSRTLYVGNLPGDTRMREVEDLFY----KYGPIVDID-LKIPPRPPGYAFLEFEDY 55 (341)
Q Consensus 1 m~~~~~~~l~V~nLp~~~t~~~l~~~F~----~~G~I~~i~-i~~~~~~~g~afV~F~~~ 55 (341)
|.-++-+.|.|.+||.++++++|++.+. ..|...-.. +.....+..-|+|+|...
T Consensus 13 m~~~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~ 72 (331)
T PF14893_consen 13 MGVDPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAED 72 (331)
T ss_pred cCcChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccc
Confidence 5556788999999999999999998764 344321110 011122345788888643
No 240
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=56.96 E-value=49 Score=21.14 Aligned_cols=43 Identities=23% Similarity=0.312 Sum_probs=30.9
Q ss_pred HHHHHHHhhccC-CEeEEEeecCCCCCcEEEEEEcCHHHHHHHH
Q 019418 20 MREVEDLFYKYG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAI 62 (341)
Q Consensus 20 ~~~l~~~F~~~G-~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai 62 (341)
-.+|.++|.+.| .|..+.+.......+...+.+.+.+.|.+++
T Consensus 12 l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 12 LAEVTEILAEAGINIKAISIAETRGEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHHHHHHh
Confidence 345667788777 8888877554445677788888877777765
No 241
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=56.54 E-value=21 Score=28.60 Aligned_cols=54 Identities=19% Similarity=0.228 Sum_probs=38.3
Q ss_pred EEEeCCCCCCCCHHHHHHHhhc-cC-CEeEEEeecCCCCCcEEEEEEcCHHHHHHH
Q 019418 8 TLYVGNLPGDTRMREVEDLFYK-YG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDA 61 (341)
Q Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~-~G-~I~~i~i~~~~~~~g~afV~F~~~e~A~~A 61 (341)
+-|+=-++..++..+|.+.++. |+ +|..|.........-=|||.+....+|...
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~KKA~V~L~~~~~aidv 138 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDV 138 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCceEEEEEECCCCcHHHH
Confidence 4555567789999999999987 55 666666654333345699999887776544
No 242
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=56.26 E-value=27 Score=23.58 Aligned_cols=19 Identities=21% Similarity=0.455 Sum_probs=16.3
Q ss_pred HHHHHHhhccCCEeEEEee
Q 019418 21 REVEDLFYKYGPIVDIDLK 39 (341)
Q Consensus 21 ~~l~~~F~~~G~I~~i~i~ 39 (341)
.+|+++|+..|+|.-+.+.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 6899999999999877773
No 243
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=55.67 E-value=52 Score=22.57 Aligned_cols=24 Identities=13% Similarity=0.214 Sum_probs=21.8
Q ss_pred EEEecChhhHHHHHHhcCcccccc
Q 019418 215 IVDYTSYDDMKYAIRKLDRSEFRN 238 (341)
Q Consensus 215 fV~f~~~~~a~~Ai~~l~g~~~~g 238 (341)
||.|.+..+|+++....+|+.+-+
T Consensus 37 YIvF~~~~Ea~rC~~~~~~~~~f~ 60 (66)
T PF11767_consen 37 YIVFNDSKEAERCFRAEDGTLFFT 60 (66)
T ss_pred EEEECChHHHHHHHHhcCCCEEEE
Confidence 899999999999999999987765
No 244
>PF15230 SRRM_C: Serine/arginine repetitive matrix protein C-terminus
Probab=48.03 E-value=32 Score=23.21 Aligned_cols=11 Identities=64% Similarity=0.742 Sum_probs=4.4
Q ss_pred CCCCCCCCCCC
Q 019418 292 SRSYSPRGKYS 302 (341)
Q Consensus 292 srs~s~~~~~~ 302 (341)
++++||-.+++
T Consensus 31 ~rSYSP~RKRR 41 (66)
T PF15230_consen 31 SRSYSPIRKRR 41 (66)
T ss_pred ccccCcccccc
Confidence 34444443333
No 245
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=46.73 E-value=7.5 Score=39.66 Aligned_cols=11 Identities=9% Similarity=0.003 Sum_probs=6.6
Q ss_pred cceeeeeCCCC
Q 019418 109 DYRVLVTGLPS 119 (341)
Q Consensus 109 ~~~l~V~nlp~ 119 (341)
..+.|++++..
T Consensus 145 ~qR~f~gvvtk 155 (1194)
T KOG4246|consen 145 PQRRFAGVVTK 155 (1194)
T ss_pred cceeeehhhhh
Confidence 35677776543
No 246
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=45.58 E-value=36 Score=31.17 Aligned_cols=32 Identities=25% Similarity=0.204 Sum_probs=23.3
Q ss_pred EEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 019418 48 AFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (341)
Q Consensus 48 afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~ 81 (341)
|||+|.++.+|+.|++.+.... +..+.|..|.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~AP 32 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAP 32 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCC
Confidence 7999999999999998654433 3444665554
No 247
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=44.25 E-value=1.5e+02 Score=23.17 Aligned_cols=72 Identities=15% Similarity=0.082 Sum_probs=51.5
Q ss_pred CCCEEEeCCCCCC---CCHHHHHHHhhccC-CEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 019418 5 SSRTLYVGNLPGD---TRMREVEDLFYKYG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (341)
Q Consensus 5 ~~~~l~V~nLp~~---~t~~~l~~~F~~~G-~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~ 80 (341)
+...|.|.+.... .+...+.+....-| .++.+..- .+-..|.|.+.++-.+|.+.|....=++..|.+..+
T Consensus 34 edpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~-----~~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~ 108 (127)
T PRK10629 34 QESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPE-----NDSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDD 108 (127)
T ss_pred CCceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEee-----CCEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 3456777766444 67778888898888 66676654 447899999999999998887766555555555554
Q ss_pred c
Q 019418 81 H 81 (341)
Q Consensus 81 ~ 81 (341)
.
T Consensus 109 p 109 (127)
T PRK10629 109 N 109 (127)
T ss_pred C
Confidence 3
No 248
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=44.00 E-value=13 Score=27.21 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=21.0
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHh
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLF 27 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F 27 (341)
-..++|.|.|||..+.+++|++.+
T Consensus 50 vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 50 VSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred ccCCEEEEeCCCCCCChhhheeeE
Confidence 467899999999999999998754
No 249
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=43.79 E-value=48 Score=24.09 Aligned_cols=49 Identities=20% Similarity=0.218 Sum_probs=33.2
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEc
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFE 53 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~ 53 (341)
...-|||+|++..+-+.-...+.+..++-.-+-+-.+....||+|-.+-
T Consensus 24 i~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~neqG~~~~t~G 72 (86)
T PF09707_consen 24 IRPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNNEQGFDFRTLG 72 (86)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCCCCCEEEEEeC
Confidence 4567999999998887777766666554433322224447899998873
No 250
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=42.63 E-value=54 Score=23.50 Aligned_cols=35 Identities=31% Similarity=0.384 Sum_probs=24.8
Q ss_pred CEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCc
Q 019418 32 PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68 (341)
Q Consensus 32 ~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~ 68 (341)
.|.+|... +..+||-|||=.++.++..|++.+.+.
T Consensus 33 ~I~Si~~~--~~lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 33 NIYSIFAP--DSLKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp ---EEEE---TTSTSEEEEEESSHHHHHHHHTT-TTE
T ss_pred ceEEEEEe--CCCceEEEEEeCCHHHHHHHHhcccce
Confidence 45565554 457999999999999999999876654
No 251
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=42.25 E-value=19 Score=31.20 Aligned_cols=34 Identities=12% Similarity=0.247 Sum_probs=29.5
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEe
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL 38 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i 38 (341)
...+||+-|||...|++.|..+.+++|-++.+.+
T Consensus 39 eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 39 EKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred cccceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 5679999999999999999999999996655544
No 252
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=40.82 E-value=8.2 Score=35.44 Aligned_cols=50 Identities=14% Similarity=0.006 Sum_probs=39.2
Q ss_pred CCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCc
Q 019418 18 TRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68 (341)
Q Consensus 18 ~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~ 68 (341)
++...|.+++.+.|.|..-.|..+ -+.|.+||..-.+++++++++.|++.
T Consensus 273 ~~~p~iF~~i~~~G~v~~~EM~rt-FNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 273 WPPPPIFKWLQKAGNVEREEMYRT-FNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CCCcHHHHHHHHhcCCCHHHHHHH-hcCccceEEEEcHHHHHHHHHHHHhc
Confidence 346788899999998866555332 23788999999999999999998875
No 253
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=40.40 E-value=87 Score=23.18 Aligned_cols=51 Identities=14% Similarity=0.188 Sum_probs=33.2
Q ss_pred CCCCCCHHHHHHHhhc-------c-CCEeEEEe--------ecCCCCCc-EEEEEEcCHHHHHHHHHh
Q 019418 14 LPGDTRMREVEDLFYK-------Y-GPIVDIDL--------KIPPRPPG-YAFLEFEDYRDAEDAIRG 64 (341)
Q Consensus 14 Lp~~~t~~~l~~~F~~-------~-G~I~~i~i--------~~~~~~~g-~afV~F~~~e~A~~Ai~~ 64 (341)
|.++++++++.++.+. . |+|..+.- ...+...| |.++.|.-..++.+.++.
T Consensus 14 l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~eler 81 (97)
T CHL00123 14 LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLEK 81 (97)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHHH
Confidence 4567777776665543 3 47766654 12445566 688999987777777753
No 254
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.03 E-value=5.3 Score=37.67 Aligned_cols=75 Identities=8% Similarity=-0.127 Sum_probs=57.4
Q ss_pred CCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 019418 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (341)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~ 81 (341)
+...|+..||...+++++.-+|..||-|..+.+.. .+...-.+||.-.+ .+|..+|..+.-+.+.|-.++|..+.
T Consensus 3 s~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 3 SMKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred chhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 35678899999999999999999999998888743 34445678887654 46777777666677777777777664
No 255
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=39.24 E-value=1.1e+02 Score=29.05 Aligned_cols=70 Identities=20% Similarity=0.372 Sum_probs=52.9
Q ss_pred CCCCCEEEeCCCCCC-CCHHHHHHHhhcc----CCEeEEEeec-------------CC----------------------
Q 019418 3 SRSSRTLYVGNLPGD-TRMREVEDLFYKY----GPIVDIDLKI-------------PP---------------------- 42 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~-~t~~~l~~~F~~~----G~I~~i~i~~-------------~~---------------------- 42 (341)
..++.+|-|-||.++ +.-.+|..+|+.| |+|..|.|.. .|
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn 222 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDN 222 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCcc
Confidence 357889999999986 7788999998866 5787777621 01
Q ss_pred ----C----------C-------------------CcEEEEEEcCHHHHHHHHHhcCCceeCC
Q 019418 43 ----R----------P-------------------PGYAFLEFEDYRDAEDAIRGRDGYNFDG 72 (341)
Q Consensus 43 ----~----------~-------------------~g~afV~F~~~e~A~~Ai~~lng~~i~g 72 (341)
+ - .-||.|+|.+.+.+......|+|..+..
T Consensus 223 ~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~ 285 (622)
T COG5638 223 VFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYEN 285 (622)
T ss_pred chhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCcccccc
Confidence 0 0 2278899999999999999999988764
No 256
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=38.87 E-value=2.5e+02 Score=28.26 Aligned_cols=97 Identities=14% Similarity=0.141 Sum_probs=61.9
Q ss_pred HHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcC--Ccee------CCeEEEEEEccCCCCCCCCCC
Q 019418 20 MREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRD--GYNF------DGYRLRVELAHGGRRHSSSMD 91 (341)
Q Consensus 20 ~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~ln--g~~i------~g~~l~v~~~~~~~~~~~~~~ 91 (341)
-++|.+.|..-+-|..|.+.. .||-++.+....-+...++.+. +..+ .|++|.|++..+.+.
T Consensus 60 A~~i~~~l~~~~~~~~veiaG----pgfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSaNpt------ 129 (577)
T COG0018 60 AEEIAEKLDTDEIIEKVEIAG----PGFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSANPT------ 129 (577)
T ss_pred HHHHHHhccccCcEeEEEEcC----CCEEEEEECHHHHHHHHHHHHHhcccccCccccCCCCEEEEEEeCCCCC------
Confidence 355666666655677887752 4566665554444444444444 2222 478999999876554
Q ss_pred CCCCCCCCCCCCCCCCCcceeeeeCCCCCCCHHHHHHHHHHhC-CeeEEEEeeC
Q 019418 92 RYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRD 144 (341)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G-~i~~~~i~~~ 144 (341)
..+.||.|-..+=-+.|-.+++..| +|+....+-|
T Consensus 130 ------------------kplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD 165 (577)
T COG0018 130 ------------------GPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVND 165 (577)
T ss_pred ------------------CCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECc
Confidence 3577887777777788888888888 5655555444
No 257
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=38.86 E-value=31 Score=26.63 Aligned_cols=58 Identities=10% Similarity=0.259 Sum_probs=27.4
Q ss_pred ceeeeeCCCCC---------CCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHh
Q 019418 110 YRVLVTGLPSS---------ASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIRE 167 (341)
Q Consensus 110 ~~l~V~nlp~~---------~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (341)
..+.|.|+|.+ .+.++|++.|..|..+.-..+.....-...+++.|......|.++..
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHHH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHHH
Confidence 46677777554 35678999999998765444444433334566666655555544433
No 258
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=38.61 E-value=1.1e+02 Score=24.75 Aligned_cols=33 Identities=33% Similarity=0.361 Sum_probs=25.9
Q ss_pred EeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCC
Q 019418 33 IVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDG 67 (341)
Q Consensus 33 I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng 67 (341)
|.+|.++. ..+||.||+....+++..++..+.+
T Consensus 36 i~~i~vp~--~fpGYVfVe~~~~~~~~~~i~~v~~ 68 (153)
T PRK08559 36 IYAILAPP--ELKGYVLVEAESKGAVEEAIRGIPH 68 (153)
T ss_pred EEEEEccC--CCCcEEEEEEEChHHHHHHHhcCCC
Confidence 66776653 4699999999988888889876654
No 259
>PF12091 DUF3567: Protein of unknown function (DUF3567); InterPro: IPR021951 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved EIVDK sequence motif.
Probab=38.22 E-value=42 Score=24.20 Aligned_cols=18 Identities=11% Similarity=0.215 Sum_probs=13.0
Q ss_pred CCCCCHHHHHHHHHHhCC
Q 019418 118 PSSASWQDLKDHMRRAGD 135 (341)
Q Consensus 118 p~~~~~~~l~~~f~~~G~ 135 (341)
-.+.+.+++.+++.+|..
T Consensus 59 ~~~Pt~EevDdfL~~y~~ 76 (85)
T PF12091_consen 59 ASEPTQEEVDDFLGGYDA 76 (85)
T ss_pred hcCCCHHHHHHHHHHHHH
Confidence 345678888888888753
No 260
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=36.63 E-value=1.6e+02 Score=21.47 Aligned_cols=43 Identities=16% Similarity=0.037 Sum_probs=32.3
Q ss_pred HHHHHHhhccC-CEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHh
Q 019418 21 REVEDLFYKYG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRG 64 (341)
Q Consensus 21 ~~l~~~F~~~G-~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~ 64 (341)
+.+.++++.+| +++++.+. .|..--.+.+++.|.+.|.++.-.
T Consensus 23 ~a~~~~~e~~Gg~l~~~y~t-~G~yD~v~i~eaPD~~~a~~~~l~ 66 (91)
T PF08734_consen 23 EAVRALIEALGGKLKSFYWT-LGEYDFVVIVEAPDDETAAAASLA 66 (91)
T ss_pred HHHHHHHHHcCCEEEEEEEe-cCCCCEEEEEEcCCHHHHHHHHHH
Confidence 45777888886 88888886 355566788899999988876543
No 261
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=36.55 E-value=45 Score=29.72 Aligned_cols=33 Identities=24% Similarity=0.084 Sum_probs=26.4
Q ss_pred CEEEeCCCCCCCCHHHHHHHhhccCCEeEEEee
Q 019418 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK 39 (341)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~ 39 (341)
....|+|||+++|..-|..++...-.+..+.++
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M 128 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQDMVLM 128 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccceEEEE
Confidence 467899999999999999999887665455443
No 262
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=35.38 E-value=73 Score=31.29 Aligned_cols=59 Identities=22% Similarity=0.387 Sum_probs=44.1
Q ss_pred EeCCCCCCCCH---HHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEE
Q 019418 10 YVGNLPGDTRM---REVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRL 75 (341)
Q Consensus 10 ~V~nLp~~~t~---~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l 75 (341)
+||||+.-... ..|..+=++||+|..+++- ..-.|.-.+.+.|++|+.. |+..+.+++.
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG------~~~~Vviss~~~akE~l~~-~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLG------SVPVVVISSYEAAKEVLVK-QDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEec------CceEEEECCHHHHHHHHHh-CCccccCCCC
Confidence 57777654333 4566666789999988772 2346788899999999985 8888998886
No 263
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=33.10 E-value=33 Score=20.38 Aligned_cols=17 Identities=18% Similarity=0.323 Sum_probs=10.5
Q ss_pred CCCCHHHHHHHhhccCC
Q 019418 16 GDTRMREVEDLFYKYGP 32 (341)
Q Consensus 16 ~~~t~~~l~~~F~~~G~ 32 (341)
.++++++|++.|.+.+.
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 46899999999988754
No 264
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=32.80 E-value=20 Score=36.76 Aligned_cols=14 Identities=7% Similarity=0.086 Sum_probs=6.9
Q ss_pred CcEEEEEEcCHHHH
Q 019418 45 PGYAFLEFEDYRDA 58 (341)
Q Consensus 45 ~g~afV~F~~~e~A 58 (341)
..|+.+.....+.+
T Consensus 59 ~~y~~t~~~~~qq~ 72 (1194)
T KOG4246|consen 59 SVYGSTSLSSSQQL 72 (1194)
T ss_pred ccccccchhhhhhh
Confidence 44555555544433
No 265
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=32.68 E-value=90 Score=30.63 Aligned_cols=41 Identities=39% Similarity=0.588 Sum_probs=36.2
Q ss_pred CCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccCCC
Q 019418 44 PPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 84 (341)
Q Consensus 44 ~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~~ 84 (341)
-..|+++.|.+++.+.+|+..++|....+..+.+..+....
T Consensus 62 ~~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~~ 102 (534)
T KOG2187|consen 62 MPKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATEV 102 (534)
T ss_pred CCCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhccccc
Confidence 36799999999999999999999999999999888876543
No 266
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=31.58 E-value=1.8e+02 Score=20.15 Aligned_cols=44 Identities=16% Similarity=0.107 Sum_probs=30.8
Q ss_pred HHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcC
Q 019418 21 REVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRD 66 (341)
Q Consensus 21 ~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~ln 66 (341)
.+|.+++.++| +.-..|.-.| .-++.|+-+.+.+.++++++.+.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG-~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSG-GGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTS-SSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCC-CCCeEEEEECCHHHHHHHHHHHH
Confidence 45677778888 5566665321 14588888889999988887653
No 267
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=31.10 E-value=1.1e+02 Score=22.43 Aligned_cols=33 Identities=18% Similarity=0.279 Sum_probs=25.1
Q ss_pred EEEeCCCCCCCCHHHHHHHhhc-cC-CEeEEEeec
Q 019418 8 TLYVGNLPGDTRMREVEDLFYK-YG-PIVDIDLKI 40 (341)
Q Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~-~G-~I~~i~i~~ 40 (341)
..|+=.++..+|..||.+.|+. || +|..|....
T Consensus 21 n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~ 55 (92)
T PRK05738 21 NKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLN 55 (92)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEE
Confidence 4566667889999999999987 55 666776643
No 268
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=29.11 E-value=1.4e+02 Score=25.46 Aligned_cols=54 Identities=15% Similarity=0.103 Sum_probs=37.6
Q ss_pred CCHHHHHHHhhccCC---EeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeC
Q 019418 18 TRMREVEDLFYKYGP---IVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD 71 (341)
Q Consensus 18 ~t~~~l~~~F~~~G~---I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~ 71 (341)
.|.+++.++...+|. |....+..-|+.++=+...-.++++|..+...|=|..+.
T Consensus 25 ~s~eea~~~~~~l~~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~a~~mlg~~l~ 81 (202)
T PF08442_consen 25 TSPEEAREAAKELGGKPLVVKAQVLAGGRGKAGGVKIAKSPEEAKEAAKEMLGKTLK 81 (202)
T ss_dssp SSHHHHHHHHHHHTTSSEEEEE-SSSSTTTTTTCEEEESSHHHHHHHHHTTTTSEEE
T ss_pred CCHHHHHHHHHHhCCCcEEEEEeEeecCcccCCceeecCCHHHHHHHHHHHhCCceE
Confidence 567888888877763 555556555666663444445789999999888888776
No 269
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=29.03 E-value=89 Score=23.25 Aligned_cols=50 Identities=14% Similarity=0.213 Sum_probs=31.4
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec-CCCCCcEEEEEEcCH
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI-PPRPPGYAFLEFEDY 55 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~-~~~~~g~afV~F~~~ 55 (341)
...-|||+|++..+-+.--..+-+.++.= .+.|.+ +....||+|-++-+.
T Consensus 26 v~~GVyVg~~S~rVRd~lW~~v~~~~~~G-~avmv~~~~~eqG~~~~t~G~~ 76 (97)
T PRK11558 26 VRAGVYVGDVSRRIREMIWQQVTQLAEEG-NVVMAWATNTESGFEFQTFGEN 76 (97)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHHhCCCC-cEEEEEcCCCCCCcEEEecCCC
Confidence 45679999998887766555555555432 333322 444569999887654
No 270
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=28.48 E-value=1.7e+02 Score=18.92 Aligned_cols=46 Identities=11% Similarity=0.116 Sum_probs=26.4
Q ss_pred EeCCCCCCCCHHHHHHHhhccC-CEeEEEeecCC-CCCcEEEEEEcCH
Q 019418 10 YVGNLPGDTRMREVEDLFYKYG-PIVDIDLKIPP-RPPGYAFLEFEDY 55 (341)
Q Consensus 10 ~V~nLp~~~t~~~l~~~F~~~G-~I~~i~i~~~~-~~~g~afV~F~~~ 55 (341)
+|..-...-.-.+|.++|.++| .|..+...... .......+.+.+.
T Consensus 3 ~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~~ 50 (71)
T cd04879 3 LIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDSP 50 (71)
T ss_pred EEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCCC
Confidence 3433333445677889999887 78787775432 2233344445443
No 271
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=26.66 E-value=1.4e+02 Score=22.21 Aligned_cols=52 Identities=19% Similarity=0.173 Sum_probs=37.4
Q ss_pred CCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCC
Q 019418 16 GDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDG 67 (341)
Q Consensus 16 ~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng 67 (341)
.+-++++|.-+...=|.|.+|.+....-..=.|.+...+..+++..++.|+.
T Consensus 7 ~~~~~~EL~~IVd~Gg~V~DV~veHp~YG~i~~~L~i~sr~Dv~~Fi~~l~~ 58 (98)
T PF02829_consen 7 PDEIEDELEIIVDNGGRVLDVIVEHPVYGEITGNLNISSRRDVDKFIEKLEK 58 (98)
T ss_dssp GGGHHHHHHHHHHTT-EEEEEEEEETTTEEEEEEEEE-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEEEEEeCCCCcEEEEEEecCCHHHHHHHHHHHhc
Confidence 3445777888878777999998865433344578889999999999987764
No 272
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=26.60 E-value=1.9e+02 Score=28.50 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=35.9
Q ss_pred CHHHHHHHhh----ccCCEeEEEeecCC--CCCcEEEEEEcCHHHHHHHHHhcC
Q 019418 19 RMREVEDLFY----KYGPIVDIDLKIPP--RPPGYAFLEFEDYRDAEDAIRGRD 66 (341)
Q Consensus 19 t~~~l~~~F~----~~G~I~~i~i~~~~--~~~g~afV~F~~~e~A~~Ai~~ln 66 (341)
+--+|..+|. .+|-|+++.++... ......++.|.+.++|..|+..+.
T Consensus 202 ~g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 202 PGFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred CccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHH
Confidence 3456777775 68899999986533 334677899999999999987754
No 273
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.21 E-value=1.9e+02 Score=18.66 Aligned_cols=44 Identities=14% Similarity=0.160 Sum_probs=25.4
Q ss_pred HHHHHHhhccC-CEeEEEeecCC-CCCcEEEEEEcCHHHHHHHHHh
Q 019418 21 REVEDLFYKYG-PIVDIDLKIPP-RPPGYAFLEFEDYRDAEDAIRG 64 (341)
Q Consensus 21 ~~l~~~F~~~G-~I~~i~i~~~~-~~~g~afV~F~~~e~A~~Ai~~ 64 (341)
.+|.++|.++| .|..+...... .......+...+.+.+.++++.
T Consensus 14 ~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~~~~~~~~L~~ 59 (65)
T cd04882 14 HEILQILSEEGINIEYMYAFVEKKGGKALLIFRTEDIEKAIEVLQE 59 (65)
T ss_pred HHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCCHHHHHHHHHH
Confidence 46667787876 67666553322 2233445555566666666664
No 274
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.12 E-value=2e+02 Score=19.07 Aligned_cols=50 Identities=16% Similarity=0.327 Sum_probs=28.7
Q ss_pred CHHHHHHHhhccC-CEeEEEeecC-CCCCcEEEEEEc--CHHHHHHHHHhcCCce
Q 019418 19 RMREVEDLFYKYG-PIVDIDLKIP-PRPPGYAFLEFE--DYRDAEDAIRGRDGYN 69 (341)
Q Consensus 19 t~~~l~~~F~~~G-~I~~i~i~~~-~~~~g~afV~F~--~~e~A~~Ai~~lng~~ 69 (341)
.-..|.++|..+| .|..+..... .......+|.+. +.+++.++|.. +|..
T Consensus 14 ~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~~~~~~~~L~~-~G~~ 67 (72)
T cd04883 14 QLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMNPRPIIEDLRR-AGYE 67 (72)
T ss_pred HHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCCHHHHHHHHHH-CCCe
Confidence 4467888898887 7777765432 222333444444 55566666654 4443
No 275
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.60 E-value=1.5e+02 Score=28.01 Aligned_cols=35 Identities=11% Similarity=0.041 Sum_probs=27.2
Q ss_pred ceeeeeCCCCCCCHHHHHHHHHHhCCe-eEEEEeeC
Q 019418 110 YRVLVTGLPSSASWQDLKDHMRRAGDV-CFSQVFRD 144 (341)
Q Consensus 110 ~~l~V~nlp~~~~~~~l~~~f~~~G~i-~~~~i~~~ 144 (341)
..|-|.++|....-+||...|..|++- .++.++.+
T Consensus 392 HVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd 427 (528)
T KOG4483|consen 392 HVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD 427 (528)
T ss_pred ceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec
Confidence 567799999999999999999999853 34444444
No 276
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=24.88 E-value=35 Score=31.45 Aligned_cols=27 Identities=22% Similarity=0.224 Sum_probs=22.9
Q ss_pred cCCCceEEEEecChhhHHHHHHhcCcc
Q 019418 208 IFAGMTGIVDYTSYDDMKYAIRKLDRS 234 (341)
Q Consensus 208 ~~~~~~gfV~f~~~~~a~~Ai~~l~g~ 234 (341)
..+-|.|||-....++++++++.|++.
T Consensus 296 tFNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 296 TFNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred HhcCccceEEEEcHHHHHHHHHHHHhc
Confidence 334579999999999999999999865
No 277
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.70 E-value=2.2e+02 Score=18.86 Aligned_cols=47 Identities=21% Similarity=0.194 Sum_probs=28.7
Q ss_pred CHHHHHHHhhccC-CEeEEEeecCC-CCCcEEEEEEcCHHHHHHHHHhc
Q 019418 19 RMREVEDLFYKYG-PIVDIDLKIPP-RPPGYAFLEFEDYRDAEDAIRGR 65 (341)
Q Consensus 19 t~~~l~~~F~~~G-~I~~i~i~~~~-~~~g~afV~F~~~e~A~~Ai~~l 65 (341)
.-.+|.++|..+| .|..+...... ...+...+.+...++.+.+++.|
T Consensus 14 ~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~L 62 (69)
T cd04909 14 VIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQEDRERAKEIL 62 (69)
T ss_pred HHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCHHHHHHHHHHH
Confidence 3467888898888 77777654321 12455667776555555555444
No 278
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=24.48 E-value=2.1e+02 Score=29.17 Aligned_cols=62 Identities=11% Similarity=0.114 Sum_probs=48.2
Q ss_pred CCCCCHHHHHHHhhccCCEe-----EEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccC
Q 019418 15 PGDTRMREVEDLFYKYGPIV-----DIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (341)
Q Consensus 15 p~~~t~~~l~~~F~~~G~I~-----~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~ 82 (341)
-..++..+|..++..-+.|. .|.|. ..|.||+-. .+.|...++.|++..+.|+.|.|+.+..
T Consensus 496 ~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~-----~~~s~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (629)
T PRK11634 496 DDGVEVRHIVGAIANEGDISSRYIGNIKLF-----ASHSTIELP-KGMPGEVLQHFTRTRILNKPMNMQLLGD 562 (629)
T ss_pred ccCCCHHHHHHHHHhhcCCChhhCCcEEEe-----CCceEEEcC-hhhHHHHHHHhccccccCCceEEEECCC
Confidence 34688888888887665443 45555 569999985 4568888999999999999999998753
No 279
>PRK09631 DNA topoisomerase IV subunit A; Provisional
Probab=24.31 E-value=5.2e+02 Score=26.43 Aligned_cols=96 Identities=14% Similarity=0.081 Sum_probs=53.4
Q ss_pred CCEEEeCCCCCCCCHHHHHHHhhc---cCCEeEEEeecCCCCCcEEE-EEEcCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 019418 6 SRTLYVGNLPGDTRMREVEDLFYK---YGPIVDIDLKIPPRPPGYAF-LEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (341)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~---~G~I~~i~i~~~~~~~g~af-V~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~ 81 (341)
.++|.|.-||+.++.+.|.+.... -|.|. |.-..+....+..| |++.....++..+..|-. --.|.+.++.
T Consensus 220 ~~~ivItEiP~~~~~~~li~~i~~~~~~~ki~-I~~i~D~s~~~v~i~i~l~~~~~~~~~~~~Lyk----~t~lq~s~~~ 294 (635)
T PRK09631 220 EKTIVIREIPFGTTTESLIASIEKAARKGKIK-ISSINDYTAENVEIEIKLPRGVYASEVIEALYA----YTDCEVSISV 294 (635)
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHcCCCc-cceeEeCCCCcEEEEEEECCCCCHHHHHHHHHH----hcCceeEeee
Confidence 468999999999999998876543 34443 22222222234554 455555555555443321 1123333321
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeeeCCCCCCCHHHHHHHHHHh
Q 019418 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRA 133 (341)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~ 133 (341)
. ..+.+.+.|.-.+..+|.+.|-.+
T Consensus 295 n---------------------------~~~i~~~~p~~~~l~~il~~~~~~ 319 (635)
T PRK09631 295 N---------------------------LLVIKDRYPVIYTVTDIIKFHAEH 319 (635)
T ss_pred e---------------------------EEEEECCcCcCCCHHHHHHHHHHH
Confidence 1 345556777777777776666544
No 280
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=24.25 E-value=37 Score=31.87 Aligned_cols=59 Identities=20% Similarity=0.278 Sum_probs=44.9
Q ss_pred CCCEEEeCCCCCCCCHH--------HHHHHhhc--cCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHH
Q 019418 5 SSRTLYVGNLPGDTRMR--------EVEDLFYK--YGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIR 63 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~--------~l~~~F~~--~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~ 63 (341)
..+.+|+.++....+.+ ++...|.. .+++..|.+.. .....|..|++|...+.|+.++.
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 34567777777665554 89999998 67887777744 45667889999999999999863
No 281
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=23.04 E-value=90 Score=24.74 Aligned_cols=32 Identities=16% Similarity=0.153 Sum_probs=27.7
Q ss_pred EEeCCCCCC-CCHHHHHHHhhccCCEeEEEeec
Q 019418 9 LYVGNLPGD-TRMREVEDLFYKYGPIVDIDLKI 40 (341)
Q Consensus 9 l~V~nLp~~-~t~~~l~~~F~~~G~I~~i~i~~ 40 (341)
|-|.|||.. .+++-|.++.+.+|++..+....
T Consensus 107 Vri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t 139 (153)
T PF14111_consen 107 VRIYGLPLHLWSEEILKAIGSKIGEPIEVDENT 139 (153)
T ss_pred hhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCC
Confidence 567899988 78888999999999999998864
No 282
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=22.29 E-value=1.1e+02 Score=21.09 Aligned_cols=29 Identities=17% Similarity=0.091 Sum_probs=22.7
Q ss_pred cEEEEEEcCHHHHHHHHHhcCCceeCCeE
Q 019418 46 GYAFLEFEDYRDAEDAIRGRDGYNFDGYR 74 (341)
Q Consensus 46 g~afV~F~~~e~A~~Ai~~lng~~i~g~~ 74 (341)
.+.+|.|.+..+|.+|-+.|....+..+.
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~l 30 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVRL 30 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEEE
Confidence 47899999999999998887765554333
No 283
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=22.27 E-value=2.7e+02 Score=19.09 Aligned_cols=49 Identities=20% Similarity=0.361 Sum_probs=29.7
Q ss_pred CHHHHHHHhhccC-CEeEEEeec-CCCCCcE-EEEEEc-CHHHHHHHHHhcCC
Q 019418 19 RMREVEDLFYKYG-PIVDIDLKI-PPRPPGY-AFLEFE-DYRDAEDAIRGRDG 67 (341)
Q Consensus 19 t~~~l~~~F~~~G-~I~~i~i~~-~~~~~g~-afV~F~-~~e~A~~Ai~~lng 67 (341)
.--++.+.|+.+| .+..|.-.. .+....| -||+|. ..+..++|++.|..
T Consensus 13 ~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~ 65 (74)
T cd04904 13 ALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRR 65 (74)
T ss_pred HHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHH
Confidence 3567778888887 666665432 2233333 467777 55556677777654
No 284
>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal. This protein contains a KOW domain, shared by bacterial NusG and the L24p/L26e family of ribosomal proteins. Although called archaeal NusG in several publications, it is the only close homolog of eukaryotic L26e in archaeal genomes, shares an operon with L11 in many genomes, and has been sequenced from purified ribosomes. It is here designated as a ribosomal protein for these reasons.
Probab=22.07 E-value=3.1e+02 Score=21.69 Aligned_cols=33 Identities=24% Similarity=0.263 Sum_probs=24.0
Q ss_pred EeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCC
Q 019418 33 IVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDG 67 (341)
Q Consensus 33 I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng 67 (341)
|..+.++ ...+||-||++...++...++..+.|
T Consensus 28 ~~~~~vp--~~fpGYvFV~~~~~~~~~~~i~~~~g 60 (145)
T TIGR00405 28 VYSILAP--ESLKGYILVEAETKIDMRNPIIGVPH 60 (145)
T ss_pred EEEEEcc--CCCCcEEEEEEECcHHHHHHHhCCCC
Confidence 4344443 45799999999988888888876655
No 285
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=22.02 E-value=3.4e+02 Score=20.91 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=17.8
Q ss_pred CCCCCCHHHHHHHhhccCCEeEEEee
Q 019418 14 LPGDTRMREVEDLFYKYGPIVDIDLK 39 (341)
Q Consensus 14 Lp~~~t~~~l~~~F~~~G~I~~i~i~ 39 (341)
||+-++ .|-+.|+.-|+|.+|-..
T Consensus 11 lPPYTn--KLSDYfeSPGKI~svItv 34 (145)
T TIGR02542 11 LPPYTN--KLSDYFESPGKIQSVITV 34 (145)
T ss_pred cCCccc--hhhHHhcCCCceEEEEEE
Confidence 566544 488899999999887443
No 286
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=21.75 E-value=66 Score=26.86 Aligned_cols=27 Identities=15% Similarity=0.203 Sum_probs=24.5
Q ss_pred eEEEEecChhhHHHHHHhcCccccccc
Q 019418 213 TGIVDYTSYDDMKYAIRKLDRSEFRNA 239 (341)
Q Consensus 213 ~gfV~f~~~~~a~~Ai~~l~g~~~~g~ 239 (341)
..-|-|.+++.|..|..+++...+.|+
T Consensus 53 rvRi~f~~p~~a~~a~i~~~~~~f~~~ 79 (193)
T KOG4019|consen 53 RVRINFSNPEAAADARIKLHSTSFNGK 79 (193)
T ss_pred eeEEeccChhHHHHHHHHhhhcccCCC
Confidence 567889999999999999999999996
No 287
>PF15063 TC1: Thyroid cancer protein 1
Probab=21.67 E-value=59 Score=22.85 Aligned_cols=26 Identities=19% Similarity=0.278 Sum_probs=21.9
Q ss_pred EEEeCCCCCCCCHHHHHHHhhccCCE
Q 019418 8 TLYVGNLPGDTRMREVEDLFYKYGPI 33 (341)
Q Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~~G~I 33 (341)
+--+.||=.+++.++|..||..-|..
T Consensus 27 KkasaNIFe~vn~~qlqrLF~~sGD~ 52 (79)
T PF15063_consen 27 KKASANIFENVNLDQLQRLFQKSGDK 52 (79)
T ss_pred hhhhhhhhhccCHHHHHHHHHHccch
Confidence 33467888999999999999999964
No 288
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=21.42 E-value=1.9e+02 Score=24.49 Aligned_cols=48 Identities=19% Similarity=0.149 Sum_probs=34.8
Q ss_pred CCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcC
Q 019418 18 TRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRD 66 (341)
Q Consensus 18 ~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~ln 66 (341)
.+.++..++...++.-. +.|+.+|...|-+-+...+.++|..|++.+-
T Consensus 24 ~~~~~A~~~l~~~~~p~-~ViKadGla~GKGV~i~~~~~eA~~~l~~~~ 71 (194)
T PF01071_consen 24 TDYEEALEYLEEQGYPY-VVIKADGLAAGKGVVIADDREEALEALREIF 71 (194)
T ss_dssp SSHHHHHHHHHHHSSSE-EEEEESSSCTTTSEEEESSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCCc-eEEccCCCCCCCEEEEeCCHHHHHHHHHHhc
Confidence 36677788887776432 5566677666666777799999999997653
No 289
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=21.39 E-value=1.5e+02 Score=21.62 Aligned_cols=49 Identities=18% Similarity=0.303 Sum_probs=29.4
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhc-cCCEeEEEeec-CCCCCcEEEEEEcC
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYK-YGPIVDIDLKI-PPRPPGYAFLEFED 54 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~I~~i~i~~-~~~~~g~afV~F~~ 54 (341)
...-|||++++..+-+.--..+-+. .++= .+.|.. +....||+|-++-+
T Consensus 24 v~~GVyVg~~s~rVRe~lW~~v~~~~~~~G-~avm~~~~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 24 PRAGVYVGGVSASVRERIWDYLAQHCPPKG-SLVITWSSNTCPGFEFFTLGE 74 (87)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHHhCCCCc-cEEEEEeCCCCCCcEEEecCC
Confidence 4567999999888766544444443 2332 333333 44567888887765
No 290
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=21.15 E-value=2e+02 Score=20.94 Aligned_cols=51 Identities=12% Similarity=0.156 Sum_probs=33.5
Q ss_pred EEEeCCCCCCCCHHHHHHHhhc-cC-CEeEEEeec-------CCCC------CcEEEEEEcCHHHH
Q 019418 8 TLYVGNLPGDTRMREVEDLFYK-YG-PIVDIDLKI-------PPRP------PGYAFLEFEDYRDA 58 (341)
Q Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~-~G-~I~~i~i~~-------~~~~------~g~afV~F~~~e~A 58 (341)
..|+=.++.++|..||.+.++. || +|..|.... .|.. .--|+|++...+..
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~kR~g~~~g~~~~~KKaiVtL~~~~~i 86 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKKRKGKFVGKTKDYKKAIVTLKEGDKI 86 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEEESSSCEEEE-EEEEEEEEESTTSCH
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCceEeCCccccCCCcEEEEEEeCCCCcc
Confidence 3455567889999999999976 56 666766633 1111 13588888776443
No 291
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=20.46 E-value=56 Score=32.80 Aligned_cols=71 Identities=18% Similarity=0.108 Sum_probs=55.8
Q ss_pred CEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEE
Q 019418 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (341)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~ 78 (341)
.+||+.|-...-+..-+..++..+++++...++. .+...+-|+++|..+..|..|.. |.+..+....+++-
T Consensus 512 p~i~~~~~~~~s~~~s~s~~s~~~~~ltk~k~l~~Cky~~~Ct~a~Ce~~HPtaa~~~~s-~p~k~fa~~~~ks~ 585 (681)
T KOG3702|consen 512 PTIFVANGHGGSNPDSLSRHSEKKNELTKAKILTRCKYGPACTSAECEFAHPTAAENAKS-LPNKKFASKCLKSH 585 (681)
T ss_pred CceecccccccCCCcchhhCcccccccccceeeccccCCCcCCchhhhhcCCcchhhhhc-cccccccccceecc
Confidence 3789999988899999999999999988887754 33445579999999999988855 67777776665554
No 292
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=20.23 E-value=1e+02 Score=28.05 Aligned_cols=26 Identities=19% Similarity=0.119 Sum_probs=21.1
Q ss_pred EEEeCCCCCCCCHHHHHHHhhccCCE
Q 019418 8 TLYVGNLPGDTRMREVEDLFYKYGPI 33 (341)
Q Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~~G~I 33 (341)
.+.|.|||++++...|..++.....+
T Consensus 103 d~VvaNlPY~Istpil~~ll~~~~~~ 128 (294)
T PTZ00338 103 DVCVANVPYQISSPLVFKLLAHRPLF 128 (294)
T ss_pred CEEEecCCcccCcHHHHHHHhcCCCC
Confidence 47889999999999999998653333
No 293
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=20.22 E-value=79 Score=28.03 Aligned_cols=28 Identities=29% Similarity=0.493 Sum_probs=23.0
Q ss_pred CCEEEeCCCCCCCCHHHHHHHhh--ccCCE
Q 019418 6 SRTLYVGNLPGDTRMREVEDLFY--KYGPI 33 (341)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~--~~G~I 33 (341)
...++|+|||++++..-|.+++. .||.+
T Consensus 97 ~~~~vv~NlPy~is~~il~~ll~~~~~g~~ 126 (262)
T PF00398_consen 97 QPLLVVGNLPYNISSPILRKLLELYRFGRV 126 (262)
T ss_dssp SEEEEEEEETGTGHHHHHHHHHHHGGGCEE
T ss_pred CceEEEEEecccchHHHHHHHhhccccccc
Confidence 56789999999999999999987 44543
Done!